taxon_oid Domain Sequencing Status Study Name Genome Name / Sample Name Sequencing Center IMG Genome ID GOLD Analysis Project Type Assembly Method Comments Has Coverage Is Public Contact Email Contact Name Is Published Pubmed ID Ecosystem Ecosystem Category Ecosystem Subtype Ecosystem Type Specific Ecosystem Habitat Latitude Longitude pH Salinity Subsurface In Meters Genome Size * assembled Gene Count * assembled 16S rRNA Count * assembled 18S rRNA Count * assembled 23S rRNA Count * assembled 28S rRNA Count * assembled SRA ID JGI Data Utilization Status Average Coverage of Assembled Sequences * assembled Unnamed: 36 microbiome_class 3300032148 *Microbiome Permanent Draft Deep subsurface sediment microbial communities from Tonga Trench, Pacific Ocean Deep subsurface sediment microbial communities from Tonga Trench, Pacific Ocean - 3_6 re-sequenced with NextSeq Marine Biological Laboratory 3300032148 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Sediment Geologic Unclassified Deep subsurface sediment -16.64175 -172.200017 131550203 401173 110 3 197 4 SRX2056172, SRX2056171 0.0 Metagenome 3300028812 *Microbiome Permanent Draft Soil microbial communities from agricultural site in Penn Yan, New York, United States Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48 DOE Joint Genome Institute (JGI) 3300028812 Metagenome Analysis spades v. 3.11.1 Yes Yes dbuckley@cornell.edu Dan Buckley No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.673 -77.032 3024527289 7587773 1126 53 2002 96 SRX5338651 Unrestricted 18.75 Metagenome 3300011826 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00835 Weill Cornell Medical College 3300011826 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.72 -73.98 33712146 61473 18 0 21 0 SRX822801 0.0 Metagenome 3300000604 *Microbiome Permanent Draft Abyssal marine microbial communities from the Mediterranean Sea Abyssal marine microbial communities from the Mediterranean Sea - kryos-hsr2-aa-cont Fidelity Systems Inc 3300000604 Metagenome Analysis released per JGI data release policy No Yes francesco.smedile@iamc.cnr.it, francesco.smedile14@gmail.com francesco smedile, Francesco Smedile No Environmental Aquatic Oceanic Marine Abyssal plane Abyssal marine 34.93 22.22 0 0 0 0 0 0 0.0 Metagenome 3300070773 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_046-O-20160727-COMP-DNA1 3300070773 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 191452598 542101 199 31 376 37 0.0 Metagenome 3300042654 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Promirotermes sp. from Ebogo II, Mbalmayo, Cameroon - Pmx449 Eurofins MWG Operon 3300042654 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 3.391726 11.472614 1008098660 1022025 132 15 204 31 0.0 Metagenome 3300027493 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepB_0h DOE Joint Genome Institute (JGI) 3300027493 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 145471815 278478 118 14 146 11 SRX5245214 Unrestricted 19.48 Metagenome 3300037470 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_091317_115_130 DOE Joint Genome Institute (JGI) 3300037470 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2060420495 3186110 806 19 1322 22 SRX9163318 Unrestricted 13.03 Metagenome 3300003843 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius geniculatus HERON ISLAND.1 DOE Joint Genome Institute (JGI) 3300003843 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 410133441 890171 7 1 12 2 SRX3340724 Unrestricted 0.0 Metagenome 3300033279 *Microbiome Permanent Draft Meromitic Lake A Freshwater microbial communities from meromitic lake A, Ellesmere Island, Canada - Sample 65m re-sequencing Laval University 3300033279 Metagenome Analysis SPADES v. 3.10.1 released by JGI data releasing policy Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 82.99445 -75.443367 1160983419 4766913 1184 2 2332 11 0.0 Metagenome 3300020027 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - H1c1 DOE Joint Genome Institute (JGI) 3300020027 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9767 -107.0044 692600876 1318435 361 14 652 30 SRX3958810, SRX3958811 Unrestricted 0.0 Metagenome 3300002064 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Galicia, Spain - SR2-P2 J. Craig Venter Institute (JCVI) 3300002064 Metagenome Analysis Released per Alexandra J. Roth Schulze (April 1, 2016) No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface 42.52 -8.82 284014369 923507 66 14 172 22 0.0 Metagenome 3300012107 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #49 DOE Joint Genome Institute (JGI) 3300012107 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 76963716 151316 62 1 110 2 SRX3296160 Unrestricted 0.0 Metagenome 3300002323 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP16-I4 3300002323 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300038636 *Microbiome Permanent Draft Activated sludge microbial communities from anaerobic digester at WWTP from various locations in Denmark Activated sludge microbial communities from anaerobic digester at WWTP in Randers, Denmark - SA-RHK-530 Aalborg University 3300038636 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified Activated sludge 56.454004 10.070742 47525883 90890 70 2 103 5 0.0 Metagenome 3300005062 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Hydrocarbon microbial Community from Halfdan Field, North Sea, Denmark - MHDA6 Shell Corporation 3300005062 Metagenome Analysis assembly with megahit Released on PI's request No Yes ebalsop@lbl.gov Eric Alsop No Environmental Aquatic Deep subsurface Marine Hydrocarbon Water 55.49 7.42 209014570 500765 1406 3 2774 60 0.0 Metagenome 3300014526 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00102 Weill Cornell Medical College 3300014526 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.74 -73.9 50467150 67615 23 2 26 3 SRX822093 0.0 Metagenome 3300021520 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L227-8m DOE Joint Genome Institute (JGI) 3300021520 Metagenome Analysis spades v. 3.11.1-check Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.688 -93.689 829331877 1745392 670 15 1167 30 SRX3984568 Unrestricted 13.94 Metagenome 3300002402 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 13SEP2009 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002402 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 55331861 140545 96 22 191 36 SRX1988264 Unrestricted 0.0 Metagenome 3300040452 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Ozarks Complex, AL, USA - LENO_063-M-20160829-COMP-DNA1 Battelle Memorial Institute 3300040452 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.85388 -88.16122 3642856 11849 24 1 53 2 0.0 Metagenome 3300039719 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, Pacific Southwest, CA, USA - SJER_001-O-20170314-COMP-DNA1 Battelle Memorial Institute 3300039719 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.10878 -119.73228 45102745 120550 194 33 332 44 0.0 Metagenome 3300001536 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illumina University of Tennessee 3300001536 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 757793013 2783379 1256 38 2242 85 0.0 Metagenome 3300005404 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205 DOE Joint Genome Institute (JGI) 3300005404 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 1084409699 2708377 1213 40 2004 77 SRX2782415 Unrestricted 0.0 Metagenome 3300005942 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary, USA - metaG S.757 DOE Joint Genome Institute (JGI) 3300005942 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.234 -123.9135 592323482 1744818 1003 177 1761 337 SRX2838000 Unrestricted 0.0 Metagenome 3300046170 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_PBmetag_190717.NPB DOE Joint Genome Institute (JGI) 3300046170 Metagenome Analysis metaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 790955633 915294 367 21 359 23 Unrestricted 0.0 Metagenome 3300044805 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Columbia River, Richland, Washington, USA - columbia_2019_sw_WHONDRS-S19S_0074 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300044805 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 46.3763 -119.2729 504945737 830581 213 107 342 123 Unrestricted 21.88 Metagenome 3300003937 *Microbiome Permanent Draft Marine microbial communities from the San Pedro channel, Pacific Ocean in the San Pedro Ocean Time-series (SPOT) study SPOT_150m_metagenome_year University of California, Davis 3300003937 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes fuhrman@usc.edu Jed Fuhrman No Environmental Aquatic Oceanic Marine Aphotic zone Marine 33.55 -118.42 179370612 180250 26 0 25 0 0.0 Metagenome 3300029239 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Sweden Activated sludge microbial communities from sewage treatment plant in Sweden - SWESTP22 - Henriksdal-surplus 129 University of Gothenburg 3300029239 Metagenome Analysis released Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified activated sludge 59.310676 18.108437 139766754 240346 136 11 238 20 0.0 Metagenome 3300059693 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2021-2001 DOE Joint Genome Institute (JGI) 3300059693 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.82726 -83.19041 1765929648 3796272 840 563 1315 810 Unrestricted 0.0 Metagenome 3300012649 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100605 University of Pennsylvania 3300012649 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 29057911 63443 19 2 24 5 SRX756489 0.0 Metagenome 3300050149 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D10_RHK1_3_to_RHK1 DOE Joint Genome Institute (JGI) 3300050149 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.154 -124.211 566772829 1052156 376 78 648 126 Unrestricted 19.9 Metagenome 3300069545 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONZ_045-M-20160714-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069545 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.10077 -96.56309 73871810 224117 138 10 270 16 0.0 Metagenome 3300035007 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Tolypothrix brevis GSE-NOS-MK-07-07A and co-occurring heterotrophs from rock surface from Grand Staircase Escalante National Monument, Utah, United States - 20181105_59A DOE Joint Genome Institute (JGI) 3300035007 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Rock surface 37.8291 -111.42 37104176 42800 20 0 13 0 SRX8239032 Unrestricted 287.98 Metagenome 3300046525 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere DOE Joint Genome Institute (JGI) 3300046525 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.588 -123.1939 385300296 680768 264 25 485 54 Unrestricted 20.68 Metagenome 3300002640 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A5-12 DOE Joint Genome Institute (JGI) 3300002640 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 6152706 16757 64 1 98 1 SRX1991281 Unrestricted 0.0 Metagenome 3300060409 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210610_14_05 DOE Joint Genome Institute (JGI) 3300060409 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 650217570 938635 253 264 312 309 Unrestricted 33.89 Metagenome 3300018409 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet fungal communities from Santa Barbara, California, USA - diluted pellet 3 DOE Joint Genome Institute (JGI) 3300018409 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4204 -119.6671 381396786 920093 856 6 1666 11 SRX3964278 Unrestricted 7.37 Metagenome 3300070639 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_041-M-20200706-COMP-DNA1 3300070639 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 50061229 144538 113 18 228 28 0.0 Metagenome 3300021175 *Microbiome Permanent Draft Wetland sediment microbial communities from Dorn Creek Dane County, Wisconsin, USA, enriched under anaerobic Fe-reducing conditions Wetland sediment microbial communities from Wisconsin, USA, enriched under anaerobic conditions and in the presence of Ferrihydrite - 12AB University of Wisconsin, Madison 3300021175 Metagenome Analysis SPAdes 3.10.0 released by JGI data releasing policy Yes Yes jmejia@wisc.edu Jacqueline Mejia No Environmental Aquatic Wetlands Freshwater Sediment Wetland Sediment 43.144933 -89.471218 963068420 2346047 420 7 767 19 0.0 Metagenome 3300060668 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_043-O-20210803-comp-1 DOE Joint Genome Institute (JGI) 3300060668 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tundra Soil Unclassified Terrestrial soil 68.665514 -149.375519 2181436083 3645334 614 117 1042 172 Unrestricted 13.49 Metagenome 3300021083 *Microbiome Permanent Draft Peat bog microbial communities from Stordalen Mire, Abisko, Sweden Peat bog microbial communities from Stordalen Mire, Abisko, Sweden - Day 0 Australian Centre for Ecogenomics 3300021083 Metagenome Analysis meta-SPAdes released by JGI data releasing policy No Yes rich.270@osu.edu Virginia Rich No Environmental Terrestrial Peat Soil Bog peat bog 68.3531685 19.0467201 1594819213 3716391 669 74 1008 140 0.0 Metagenome 3300065609 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 802 in Cardston County, Alberta, Canada - S00JY_0052 Microbiome Insights 3300065609 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.264899 -113.060598 328742387 470889 97 0 149 1 0.0 Metagenome 3300039318 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 635_4M Beijing Genomics Institute (BGI) 3300039318 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 40683869 44934 27 0 39 0 ERX491288 0.0 Metagenome 3300056683 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.3W.8 SIP fraction DOE Joint Genome Institute (JGI) 3300056683 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 167454521 331543 111 1 188 0 Unrestricted 14.45 Metagenome 3300015048 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR13_J_MetaG DOE Joint Genome Institute (JGI) 3300015048 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 61.2418 21.4803 62746559 131276 55 2 92 0 SRX3604012 Unrestricted 189.97 Metagenome 3300041505 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG AgResearch, New Zealand, Mosgeil 3300041505 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Unclassified Roots Unclassified White clover root -43.648506 172.343549 982619114 1890855 196 41 620 95 0.0 Metagenome 3300031784 *Microbiome Permanent Draft Freshwater fungal communities from various locations Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112 DOE Joint Genome Institute (JGI) 3300031784 Metagenome Analysis spades v. 3.12.0 Yes Yes tyjames@umich.edu Timothy Y. James No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.8268 -83.1913 3461430844 7005632 1211 408 1664 657 SRX6420477 Unrestricted 18.18 Metagenome 3300010229 *Microbiome Permanent Draft Soil microbial communities from Bangor area, North Wales, UK enriched with cashew seed oil Soil microbial communities from Bangor area, North Wales, UK, treated with sorgoleone, replicate 1 Fidelity Systems Inc 3300010229 Metagenome Analysis Phred/Phrap/Consed v. 23.0 released per JGI data release policy Yes Yes stepan.toshchakov@gmail.com Stepan Toshchakov No Engineered Lab enrichment Unclassified Unclassified Unclassified soil 53.24 -4.01 97686437 310802 94 2 179 2 0.0 Metagenome 3300069406 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_041-M-20170628-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069406 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 28655711 84879 115 2 193 2 0.0 Metagenome 3300042950 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-323 Genome Quebec 3300042950 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.318415 -119.256066 1301645971 2850967 499 183 863 301 0.0 Metagenome 3300043035 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Shale gas microbial communities from Fort St. John, British Columbia, Canada - UGR 52.1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043035 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back shale gas 56.0 -122.0 19551135 28861 22 0 22 0 SRX8356291 Unrestricted 705.69 Metagenome 3300000900 *Microbiome Permanent Draft Red biofilm microbial communities from Diamante Lake, Argentina Diamante Lake Red Biofilm INDEAR Instituto de Agrobiotecnologia Rosario 3300000900 Metagenome Analysis released per JGI data release policy No Yes nicorascovan@soilgene.net, nicorasco@hotmail.com Nicolas Rascovan No Environmental Aquatic Alkaline Non-marine Saline and Alkaline Microbial mats Red biofilm -26.034111 -67.039458 11 42651092 73225 14 0 25 0 0.0 Metagenome 3300007797 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 764325968 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007797 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 148770373 180112 103 1 121 0 0.0 Metagenome 3300045021 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Plains ecozone, Canada - Lake 04-573 Genome Quebec 3300045021 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 67.34958 -134.923101 1184025686 2850454 437 81 709 158 0.0 Metagenome 3300019863 *Microbiome Finished Marine microbial communities from Tor Caldara Marine established microbial mat bacterial communities from Tor Caldara shallow water vent, Tyrrhenian Sea, Italy - TCM1 re-assembly(megahit) Molecular Research LP (MR DNA) 3300019863 Metagenome Analysis Megahit released by JGI data releasing policy No Yes sushmita.patwardhan@gmail.com Sushmita Patwardhan No Environmental Aquatic Hydrothermal vents Marine Microbial mats Marine microbial mat 41.48583333 12.58972222 226385715 479229 308 11 582 28 0.0 Metagenome 3300000220 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion v2 (version 2) DOE Joint Genome Institute (JGI) 3300000220 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.0412 -89.6864 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300030088 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces viral communities from colorectal cancer patient in Boston, USA - MG100069 University of Michigan 3300030088 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 42.36 -71.06 3247725 6185 6 0 12 0 0.0 Metagenome 3300039365 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 184_4M Beijing Genomics Institute (BGI) 3300039365 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 41846080 61657 38 0 49 0 ERX490983 0.0 Metagenome 3300028128 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 57D DOE Joint Genome Institute (JGI) 3300028128 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 278601413 671815 232 32 342 64 SRX5172032 Unrestricted 16.46 Metagenome 3300029725 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37323 Beijing Genomics Institute (BGI) 3300029725 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 139593422 165529 96 0 164 0 0.0 Metagenome 3300020236 *Microbiome Permanent Draft Black smoker hydrothermal vent sediment microbial communities from the Guaymas Basin, Mid-Atlantic Ridge, South Atlantic Ocean Black smoker hydrothermal vent sediment microbial communities from the Guaymas Basin, Mid-Atlantic Ridge, South Atlantic Ocean - Sample 1 (For TVG13) Archaea reference mapping and reassemble Beijing Genomics Institute (BGI) 3300020236 Metagenome Analysis idba_ud 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Hydrothermal vents Marine Black smokers hydrothermal vents -15.160005 -13.350021 85671503 160516 433 0 609 4 0.0 Metagenome 3300022810 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY16 Version 2 University of New South Wales 3300022810 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 14592491 22282 12 0 18 0 0.0 Metagenome 3300057212 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - LE-20 DOE Joint Genome Institute (JGI) 3300057212 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.703 -83.254 572236987 1286989 342 64 543 100 Unrestricted 33.5 Metagenome 3300014561 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS64_24 University of Hohenheim 3300014561 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 114452598 175240 61 1 94 1 0.0 Metagenome 3300053117 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere DOE Joint Genome Institute (JGI) 3300053117 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.58753 -123.19336 523920082 768608 197 93 268 116 Unrestricted 0.0 Metagenome 3300006924 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG DOE Joint Genome Institute (JGI) 3300006924 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.51 -76.2 309487864 707742 0 0 0 0 SRX2928637 Unrestricted 0.0 Metagenome 3300007570 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Dobu ""bubble"", co11ds" University of New South Wales 3300007570 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Coelocarteria singaporensis (marine sponge) -9.73665 150.867667 123158199 264661 79 5 119 7 0.0 Metagenome 3300003241 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-A DOE Joint Genome Institute (JGI) 3300003241 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 383626 1203 18 3 34 11 SRX2575239 Unrestricted 0.0 Metagenome 3300006343 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0200m University of Hawaii 3300006343 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes ktennessen@lbl.gov Kristin Tennessen No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 78560499 206204 287 25 471 40 0.0 Metagenome 3300025376 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA10M (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025376 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu; shaomei.he@gmail.com Katherine McMahon; Shaomei He No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 92037190 213120 158 0 278 4 SRX2565080 Unrestricted 0.0 Metagenome 3300006204 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t30_698P_inflammed - viral_metagenome University of Texas Southwestern Medical Center 3300006204 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 91869390 193494 53 0 109 0 0.0 Metagenome 3300007862 *Microbiome Permanent Draft Microbial communities from Columbia River Estuary, Oregon, USA Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373A_0.2um Oregon State University 3300007862 Metagenome Analysis megahit released per JGI data release policy Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Coastal Marine Unclassified estuary water 46.234 -123.9163 313488181 679961 348 43 559 82 0.0 Metagenome 3300048759 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 S-2-M DOE Joint Genome Institute (JGI) 3300048759 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3532 19.0475 583111667 861834 158 16 229 23 Restricted 13.16 Metagenome 3300026091 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_AAIW_ad_750m_LV_A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026091 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 245755643 555765 230 8 396 19 SRX2776067 Unrestricted 0.0 Metagenome 3300001224 *Microbiome Permanent Draft Switchgrass rhizosphere microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere microbial communities from Knoxville, Tennessee, USA - 12_1 University of Tennessee 3300001224 Metagenome Analysis released per JGI data release policy No Yes jwang43@utk.edu Jun Wang No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 35.9606 -83.9208 5212192 18023 12 0 30 1 0.0 Metagenome 3300011861 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00410 Weill Cornell Medical College 3300011861 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.97 40980127 70749 23 0 41 0 SRX822380 0.0 Metagenome 3300015362 *Microbiome Permanent Draft Danish lakes Microbial communities Depth profiles Lake Almind and Hund Sediment microbial communities from Lake Hund, Silkeborg, Region Midtjylland, Denmark - HUS_14.08.12_sediment_5-10cm metaSPAdes assemblies Odense University Hospital 3300015362 Metagenome Analysis metaSPAdes 3.7.1 released by JGI data releasing policy Yes Yes atreusch@biology.sdu.dk Alexander Treusch No Environmental Aquatic Lake Freshwater Sediment Sediment 56.04 9.54 12227438 50440 16 0 48 1 0.0 Metagenome 3300011147 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00561 Weill Cornell Medical College 3300011147 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.67 -73.95 9677366 14992 6 0 12 0 SRX822528 0.0 Metagenome 3300012023 *Microbiome Permanent Draft Norwegian Young Sea Ice 2015 - N-ICE15 Seawater microbial communities from Norwegian Young Sea Ice, Arctic Ocean, Norway, 2015 - N-ICE15, floe 2, site 1, 50m LGC Genomics 3300012023 Metagenome Analysis Ray v 2.3.1 released by JGI data releasing policy No Yes antonioggsousa@gmail.com; cmagalhaes@ciimar.up.pt Antonio Sousa; Catarina Magalh?es No Environmental Aquatic Oceanic Marine Aphotic zone marine 83.166667 22.016944 330280 1563 7 0 17 0 0.0 Metagenome 2149837016 *Microbiome Permanent Draft Human fecal microbial communities from the University of Arizona, for HMP training Human fecal microbial communities from the University of Arizona (HMP) - Ef2 Chinese National Human Genome Center, Beijing 2149837016 Metagenome Analysis released per JGI data release policy No Yes mbsulli@email.arizona.edu, mbsulli@gmail.com Matthew Sullivan No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 56.13 9.24 18465818 24891 178 1 357 0 0.0 Metagenome 3300040573 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 069_R1_022417 University of Maryland 3300040573 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.52686 19.01319 2192460 6262 10 1 14 5 0.0 Metagenome 3300003114 *Microbiome Permanent Draft Continuous culture Bioreactor microbial community with low C:N ratio inoculated with sediment from German Wadden Sea Continuous culture Bioreactor microbial community with low C:N ratio inoculated with sediment from Wadden Sea, Germany - sample 3, day 33 3300003114 Metagenome Analysis MetaVelvet v. 0.3 Made public because these are downloaded from Genbank No Yes mstrous@mpi-bremen.de Marc Strous No Engineered Bioreactor Marine sediment inoculum Continuous culture Unclassified Continuous culture Bioreactor 54.53754 8.400555 14865852 18648 15 0 30 0 0.0 Metagenome 3300056927 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Activated sludge microbial communities from bioreactor in WWTP, Madison, WI, USA - RS_2021-08-19_SampleB DOE Joint Genome Institute (JGI) 3300056927 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.03331 -89.35633 165260506 190213 77 11 82 20 Unrestricted 12.68 Metagenome 3300020311 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000475 (ERX556071-ERR599171) CEA Genoscope 3300020311 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -31.0263 4.6977 191596870 498848 244 32 422 59 0.0 Metagenome 3300005749 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS854 Marine Biological Laboratory 3300005749 Metagenome Analysis Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow marine hydrothermal vent 37557791 48430 1 1 4 2 0.0 Metagenome 3300029081 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 157_12M Beijing Genomics Institute (BGI) 3300029081 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 57419746 63466 46 0 71 0 ERX490961 0.0 Metagenome 3300001442 *Microbiome Permanent Draft Permafrost soil microbial communities from Miers Valley, Antarctica Permafrost soil microbial communities from Miers Valley, Antarctica - Ant2 3300001442 Metagenome Analysis released by JGI data releasing policy No Yes kirill.krivushin@utoronto.ca Kirill Krivushin No Environmental Terrestrial Unclassified Soil Permafrost Permafrost soil -78.099535 163.850256 12902225 42181 16 0 35 0 0.0 Metagenome 3300001904 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 DOE Joint Genome Institute (JGI) 3300001904 Metagenome Analysis Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn rhizosphere 42.3948 -85.3738 220180344 623884 646 59 1034 115 SRX1990928 Unrestricted 0.0 Metagenome 3300014234 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 210_RF_2014-6-9 San Diego State University 3300014234 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 797866 2025 19 10 24 31 0.0 Metagenome 3300025595 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA5M (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025595 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu; shaomei.he@gmail.com Katherine McMahon; Shaomei He No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 282837964 618381 283 10 448 15 SRX2518385 Unrestricted 0.0 Metagenome 3300013306 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG DOE Joint Genome Institute (JGI) 3300013306 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil switchgrass rhizosphere 42.3948 -85.3738 5056069288 10678849 3642 365 6197 599 SRX3900319 Unrestricted 6.84 Metagenome 3300035504 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver small intestine microbial communities from Maple Ridge, British Columbia, Canada - Beaver3Small.Intestine1 DOE Joint Genome Institute (JGI) 3300035504 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Small intestine Digestive system Unclassified small intestine 49.18 -122.54 1540736487 2166825 29 19 51 30 SRX8345808 Unrestricted 5.8 Metagenome 3300045946 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P34SSC2_191111_i DOE Joint Genome Institute (JGI) 3300045946 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 814829596 1251068 259 3 445 1 SRX20650187 Unrestricted 11.01 Metagenome 3300011609 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -PQiagenBeadWash928-7 Weill Cornell Medical College 3300011609 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.96 35683280 40365 32 0 42 0 SRX823471 0.0 Metagenome 3300014013 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01053 Weill Cornell Medical College 3300014013 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.67 -73.94 18688112 33381 12 0 18 0 SRX823015 0.0 Metagenome 3300071093 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from North Sterling, Colorado, USA - STER_018-M-20160815-COMP-DNA1 3300071093 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Agricultural land Soil 1157 5 0 0 0 0 0.0 Metagenome 3300022886 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S079-202R-5 DOE Joint Genome Institute (JGI) 3300022886 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 438571904 1120467 604 40 1056 55 SRX4799397 Unrestricted 7.51 Metagenome 3300042406 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME24Oct2000-rr0462 DOE Joint Genome Institute (JGI) 3300042406 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1006849475 1565041 406 34 544 52 Unrestricted 27.29 Metagenome 3300035123 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D1103S20 DOE Joint Genome Institute (JGI) 3300035123 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0387 471441388 1116179 483 2 838 7 SRX8255817 Unrestricted 6.06 Metagenome 3300043002 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - Beaver1Cecum1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043002 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.18 -122.54 109857864 212166 311 4 542 9 SRX8344186 Unrestricted 39.29 Metagenome 3300000456 *Microbiome Permanent Draft Hot spring nanoarchaeal communities from Obsidian Pool, Yellowstone National Park Hot spring nanoarchaeal communities from Obsidian Pool, Yellowstone National Park HudsonAlpha Institute for Biotechnology, Oak Ridge National Laboratory 3300000456 Metagenome Analysis CLCbio, Velvet released per JGI data release policy No Yes podarm@ornl.gov Mircea Podar No Environmental Aquatic Unclassified Thermal springs Unclassified Hot spring 44.6 -110.433 591713 711 1 0 1 0 0.0 Metagenome 3300038500 *Microbiome Permanent Draft Freshwater sediment microbial communities from Alaska Lake sediment microbial communtites from St. Paul Island, Alaska - PH178_465 University of California, Santa Cruz 3300038500 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Sediment Lake sediment 57.18 -170.25 2304111 7100 5 0 9 0 0.0 Metagenome 3300001600 *Microbiome Draft Marine microbial communities from chronically polluted sediments in four geographic locations Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site OR sample ARG 06_12.3m v2 (version 2) DOE Joint Genome Institute (JGI) 3300001600 Metagenome Analysis released based on JGI ITS Yes Yes hdionisi@cenpat.edu.ar Hebe Dionisi Yes 28702706 Environmental Aquatic Intertidal zone Marine Sediment Marine -54.80407 -68.288208 65605680 181347 170 25 325 29 Unrestricted 0.0 Metagenome 3300002567 *Microbiome Permanent Draft Mangrove soil microbial communities from Bertioga, Brazil, sampling enzymes Mangrove soil microbial communities from Bertioga, Brazil, sampling enzymes - DNAtotal_contig01_Mgv02-1 3300002567 Metagenome Analysis CLC Genomics Workbench released by JGI data releasing policy No Yes dfdomingos@uol.com.br Daniela Domingos, Daniela F. Domingos No Environmental Aquatic Oceanic Marine Oil-contaminated sediment Mangrove soil -23.5374 -46.125 48959 70 0 0 0 0 0.0 Metagenome 3300045066 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-603 Genome Quebec 3300045066 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 57.292089 -111.238794 1328447312 3152671 790 240 1297 429 0.0 Metagenome 3300070412 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_046-M-20200730-COMP-DNA1 3300070412 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 43072391 129372 91 14 205 19 0.0 Metagenome 3300026187 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026187 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Pond water 37.4973 -122.1295 326262907 713012 231 63 321 95 SRX3203234 Unrestricted 0.0 Metagenome 3300027298 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C49A8_35 (SPAdes) DOE Joint Genome Institute (JGI) 3300027298 Metagenome Analysis spades v. 3.11.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 186775520 425070 222 58 354 97 SRX1990963 Unrestricted 0.0 Metagenome 3300060744 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Yellowstone NP, Wyoming, USA - YELL_016-M-20210708-comp-1 DOE Joint Genome Institute (JGI) 3300060744 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 44.965771 -110.583711 1035151817 1787875 436 24 728 39 Unrestricted 20.27 Metagenome 3300043464 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Sep2011-rr0290 DOE Joint Genome Institute (JGI) 3300043464 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1122064004 1596993 404 62 510 76 Unrestricted 18.34 Metagenome 7000000618 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 763536994 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000618 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 132257064 222989 0 0 0 0 0.0 Metagenome 3300044832 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_28CD DOE Joint Genome Institute (JGI) 3300044832 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4324 -106.0309 1404182906 2264562 307 63 498 74 SRX20649821 Unrestricted 13.57 Metagenome 3300006620 *Microbiome Permanent Draft Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia - TJ10 time point Australian Centre for Ecogenomics 3300006620 Metagenome Analysis CLC released per JGI data release policy No Yes crinke@lbl.gov Christian Rinke No Environmental Aquatic Coastal Marine Unclassified marine surface water -34.1192 151.2267 123919935 179220 16 2 20 3 0.0 Metagenome 3300020524 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 16NOV2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020524 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 104797511 220394 120 17 205 18 SRX1989932 Unrestricted 0.0 Metagenome 3300011415 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT469_2 DOE Joint Genome Institute (JGI) 3300011415 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8893 -106.908 272677234 619468 293 27 584 42 SRX3368481 Unrestricted 0.0 Metagenome 3300026636 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2015_5_14 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026636 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 6286827 8402 5 3 20 3 SRX2925235 Unrestricted 0.0 Metagenome 3300049008 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Ob River, Yamalo-Nenets Autonomous Okrug, Russia - Ob' 2004-1 DOE Joint Genome Institute (JGI) 3300049008 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 66.5166 66.6 389743453 774281 265 20 395 33 Unrestricted 16.93 Metagenome 3300042545 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jun2004-rr0626 DOE Joint Genome Institute (JGI) 3300042545 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 668538683 1087477 292 45 400 66 Unrestricted 21.33 Metagenome 3300026169 *Microbiome Permanent Draft Utah desert microbiome from environmental samples near Hanksville, Utah, USA Dry sediment microbial communities from Utah desert near Hanksville, Utah, USA - S2.2 McGill University 3300026169 Metagenome Analysis canu v. 1.7 released by Catherine Maggiori No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Terrestrial Unclassified Soil Desert Dry sediment 38.41670818 -110.78537559 3822825 5432 0 0 0 0 0.0 Metagenome 3300009459 *Microbiome Permanent Draft Host-associated microbial communities of aphids from plants in several locations around USA Microbial communities of aphids from Hamamelis virginiana in Wilton, CT, USA - Hamamelistes spinosus NM072310_02 seqcov University of Texas, Austin 3300009459 Metagenome Analysis CLC Genomics released per JGI data release policy Yes Yes becky.chong@utexas.edu Rebecca Chong No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Hamamelis virginiana 41.196144 -73.433615 253534170 133417 2 1 3 1 0.0 Metagenome 3300012580 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100666 University of Pennsylvania 3300012580 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 11153378 31517 21 0 25 0 SRX756428 0.0 Metagenome 3300011468 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00985 Weill Cornell Medical College 3300011468 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.58 -73.83 15331232 24945 8 1 16 1 SRX822947 0.0 Metagenome 3300029197 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021231-89 Beijing Genomics Institute (BGI) 3300029197 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 110380476 145387 124 0 150 0 0.0 Metagenome 3300009824 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG DOE Joint Genome Institute (JGI) 3300009824 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes loy@microbial-ecology.net; Michael.Pester@dsmz.de Alexander Loy; Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.1318 11.881 1231545257 2249307 360 3 509 9 Unrestricted 0.0 Metagenome 3300042138 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 DOE Joint Genome Institute (JGI) 3300042138 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.1836 -97.9974 164733989 412437 207 10 338 18 Unrestricted 8.62 Metagenome 7000000665 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764508039 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000665 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 88868946 141503 0 0 0 0 0.0 Metagenome 3300037807 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI147_2018_nov_150m DOE Joint Genome Institute (JGI) 3300037807 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 293914542 594289 239 12 397 20 SRX9402696 Unrestricted 23.83 Metagenome 3300050283 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_41 DOE Joint Genome Institute (JGI) 3300050283 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -74.179 162.515 368988839 543783 124 17 181 29 SRX18236975 Restricted 45.56 Metagenome 3300055562 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.17C.8 SIP fraction DOE Joint Genome Institute (JGI) 3300055562 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 149447088 274309 65 5 107 10 Unrestricted 23.14 Metagenome 3300005656 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB19-Kit DOE Joint Genome Institute (JGI) 3300005656 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes wagner@microbial-ecology.net Michael Wagner Yes 28386012 Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 1131200198 2888844 1144 37 1887 57 SRX2838875 Unrestricted 0.0 Metagenome 3300007125 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 675950834 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007125 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 203466534 285969 149 0 184 0 0.0 Metagenome 2044078011 *Microbiome Permanent Draft Xyleborus affinis microbial communities from Bern, Switzerland Xyleborus affinis microbial communities from Bern, Switzerland, sample of larvae DOE Joint Genome Institute (JGI) 2044078011 Metagenome Analysis Newbler No Yes gsuen@wisc.edu Garret Suen Yes 25406380 Environmental Terrestrial Insects nest Nest Nest dump Xyleborus affinis 46.903604 7.5 54155335 83071 6 0 15 0 0.0 Metagenome 3300001577 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from East of Antigua and Barbuda, Atlantic Ocean - MP2497 DOE Joint Genome Institute (JGI) 3300001577 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 17.43 -59.83 39980741 85711 62 8 94 17 SRX1981970 Unrestricted 0.0 Metagenome 3300032397 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0 DOE Joint Genome Institute (JGI) 3300032397 Metagenome Analysis spades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5072 -110.3564 5196582761 11215263 2172 35 3473 53 SRX6380945 Unrestricted 12.43 Metagenome 3300014582 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -PQiagenBeadWash928-3 Weill Cornell Medical College 3300014582 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.96 8742434 15479 14 6 1 6 SRX823469 0.0 Metagenome 3300044759 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_117 DOE Joint Genome Institute (JGI) 3300044759 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 848281873 2312963 849 34 1546 53 Unrestricted 6.8 Metagenome 3300042830 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148 NMDC pilot DOE Joint Genome Institute (JGI) 3300042830 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92045766 -106.94845279 609465681 1536290 508 21 957 43 SRX5354688 0.0 Metagenome 3300040216 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_016-M-20140327-COMP-DNA1 Argonne National Laboratory 3300040216 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 9280590 28294 35 7 64 16 ERX2133956 0.0 Metagenome 3300070885 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_008-M-20190620-COMP-DNA1 Battelle Memorial Institute 3300070885 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 45.823595 -121.973495 4.99-5.56 16500124 51552 48 6 86 10 0.0 Metagenome 3300049690 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G13_A_4_drought DOE Joint Genome Institute (JGI) 3300049690 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 232190738 555847 422 38 875 64 Unrestricted 12.72 Metagenome 3300023068 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 20-24 DOE Joint Genome Institute (JGI) 3300023068 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0474 332408883 612985 118 3 192 13 SRX4415364, SRX8658336 Unrestricted 0.0 Metagenome 3300038677 *Microbiome Permanent Draft Extreme environments viral communities from various locations Glacier ice viral communities from Ngari, Tibet, China - 17_GP2_125.0 DOE Joint Genome Institute (JGI) 3300038677 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Ice Freshwater Glacier ice 35.2833 81.4833 3217777 10779 37 4 46 3 SRX9107855 Unrestricted 2714.24 Metagenome 3300007149 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila falleni female 4 gut Cornell University 3300007149 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy Yes Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila falleni female adult gut 43.025606 -77.572811 130849596 335167 50 10 78 22 0.0 Metagenome 3300012478 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.9.old.080610 DOE Joint Genome Institute (JGI) 3300012478 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 74815646 206092 203 15 416 37 SRX3527431 Unrestricted 0.0 Metagenome 3300016645 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Site 227 with 3.0UM filter J. Craig Venter Institute 3300016645 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4 78.18278 6.94 18931921 49500 28 0 52 0 0.0 Metagenome 3300001098 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 DOE Joint Genome Institute (JGI) 3300001098 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 25123493 75313 129 61 195 79 SRX3312006 Unrestricted 0.0 Metagenome 3300029942 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Sweden Biosolids microbial communities from sewage treatment plant in Sweden - SWESTP8 - Uppsala-digested 109 University of Gothenburg 3300029942 Metagenome Analysis released Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified biosolids 59.844519 17.659844 211393340 352836 196 0 308 0 0.0 Metagenome 3300049219 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - J3_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049219 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 206522771 450960 257 8 473 8 Unrestricted 0.0 Metagenome 3300029404 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 047_3_11_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029404 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 173793716 195705 201 0 251 0 0.0 Metagenome 3300000070 *Microbiome Permanent Draft Freshwater microbial plankton communities from Lake Konstanz, Germany Freshwater microbial plankton communities from Lake Konstanz, Germany, sample GS698_3.0 um size class J. Craig Venter Institute (JCVI) 3300000070 Metagenome Analysis released per JGI data release policy No Yes david.schleheck@uni-konstanz.de David Schleheck No Environmental Aquatic Lentic Freshwater Epilimnion Freshwater 47.451381 9.073833 0 0 0 0 0 0 0.0 Metagenome 3300011882 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00315 Weill Cornell Medical College 3300011882 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.74 -74.0 50048959 76147 23 0 31 0 SRX822288 0.0 Metagenome 3300047185 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2017 IH01_21cm DOE Joint Genome Institute (JGI) 3300047185 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.3586 19.0475 397020796 650521 206 0 389 0 Restricted 19.38 Metagenome 3300003857 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz DOE Joint Genome Institute (JGI) 3300003857 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes avisel@lbl.gov, laila.partida@cinvestav.mx Axel Visel, Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.0936 -100.2988 194148330 366030 386 60 579 98 SRX2124704 Unrestricted 0.0 Metagenome 3300046680 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere DOE Joint Genome Institute (JGI) 3300046680 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1214 -123.2696 851121809 1369153 254 75 416 92 Unrestricted 13.83 Metagenome 3300056766 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA32 DOE Joint Genome Institute (JGI) 3300056766 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 190771110 454060 382 7 819 13 Restricted 0.0 Metagenome 3300039200 *Microbiome Permanent Draft Freshwater sediment microbial communities from Chandeleur Islands, USA Subtidal sediment core microbial communities from Chandeleur Islands, USA - SSubC2 University of Alabama 3300039200 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Wetlands Freshwater Sediment Subtidal sediment core 29.862806 -88.841194 7019689 21048 22 0 59 0 0.0 Metagenome 3300029062 *Microbiome Permanent Draft Utah desert microbiome from environmental samples near Hanksville, Utah, USA Rock biofilm microbial communities from Utah desert near Hanksville, Utah, USA - E33_0.001 McGill University 3300029062 Metagenome Analysis canu v. 1.7 released by Catherine Maggiori No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Terrestrial Unclassified Soil Desert Rock biofilm 38.41714146 -110.78530232 1173879 2378 0 0 0 0 0.0 Metagenome 3300026259 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV63 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026259 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 385918524 762223 261 2 424 9 SRX2782343 Unrestricted 0.0 Metagenome 3300007991 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 764649650 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007991 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 189687798 252236 155 0 201 0 0.0 Metagenome 3300070995 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_003-M-20170626-COMP-DNA1 3300070995 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 248324 831 4 0 9 0 0.0 Metagenome 3300070420 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Alabama, USA - LENO_061-M-20180709-COMP-DNA1 3300070420 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 7293767 23077 38 4 64 8 0.0 Metagenome 3300020277 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100001971 (ERX556102-ERR599152) CEA Genoscope 3300020277 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 14.1468 -116.6821 299317090 694874 235 7 419 12 0.0 Metagenome 3300018013 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100 DOE Joint Genome Institute (JGI) 3300018013 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 714145524 1340414 403 5 716 17 SRX3960118 Unrestricted 15.06 Metagenome 3300043633 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 310-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043633 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9094 -107.0283 691897389 1847948 487 16 880 28 Unrestricted 6.95 Metagenome 3300026842 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA- GW-RW T4_22-July-14 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026842 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 39603289 117401 119 37 199 40 SRX2838884 Unrestricted 0.0 Metagenome 3300036820 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in California, United States - CAS_8 DOE Joint Genome Institute (JGI) 3300036820 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil 37.0 -122.2 1719669227 2446858 403 62 563 71 SRX8386825 Unrestricted 14.94 Metagenome 3300027024 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 42 (SPAdes) DOE Joint Genome Institute (JGI) 3300027024 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 106921182 247922 119 0 208 1 SRX1985053 Unrestricted 0.0 Metagenome 3300005239 *Microbiome Permanent Draft Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine J. Craig Venter Institute (JCVI) 3300005239 Metagenome Analysis 8.3rc1 and cd-hit 99% released per JGI data release policy No Yes prohan@gmail.com, prohan@gmail.com; jyyanyong@kribb.re.kr Rohan Sachdeva, Rohan Sachdeva; YUE JIANG No Environmental Aquatic Oceanic Marine Unclassified marine 43.2393 -68.368612 1001845028 1484907 444 7 673 13 0.0 Metagenome 3300044519 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - DOSP3-9-5-19 DOE Joint Genome Institute (JGI) 3300044519 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.1716 -120.6908 794010606 1824025 532 48 935 77 Restricted 10.16 Metagenome 3300043378 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 164-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043378 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9374 -107.0123 683488992 1813464 517 43 991 63 Unrestricted 7.48 Metagenome 3300037723 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site1_salt_MIII_2 DOE Joint Genome Institute (JGI) 3300037723 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Salt marsh microbial mat 20.7609 58.6478 247354991 622170 118 13 179 23 SRX9169869 Unrestricted 29.88 Metagenome 3300027363 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Root nodule microbial communities of legume samples collected from California, USA - Siratro red BW (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027363 Metagenome Analysis spades v. 3.11.1 Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Host-associated Plants Nodule Roots Unclassified Root nodules 34.0722 -118.4441 372208092 291508 9 5 10 13 SRX2752623 Unrestricted 0.0 Metagenome 3300044646 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME22Sep2018-rr0941 DOE Joint Genome Institute (JGI) 3300044646 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1420145092 2088075 538 76 695 121 Unrestricted 16.44 Metagenome 3300013288 *Microbiome Permanent Draft Activated sludge bacterial and viral communities from EBPR bioreactors in Australia Activated sludge bacterial and viral communities from EBPR bioreactors in Queensland, Australia - SBR4-V90709 California Institute of Technology 3300013288 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Activated sludge -27.49999 153.01209 15408728 39415 19 5 28 7 SRX1077117 0.0 Metagenome 3300014744 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS50_12 University of Hohenheim 3300014744 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 71901059 124119 51 0 101 0 0.0 Metagenome 3300069383 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_001-M-20160809-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069383 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 25154046 87387 62 8 122 13 0.0 Metagenome 3300031800 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051 DOE Joint Genome Institute (JGI) 3300031800 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 74.6947 -146.6612 990772832 2044380 684 54 1108 84 SRX5817076 Unrestricted 20.28 Metagenome 3300048832 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Sediment microbial communities from freshwater Prado Wetlands in Corona, California, USA - ZJ_Prado_202 DOE Joint Genome Institute (JGI) 3300048832 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Wetlands Freshwater Sediment Sediment 33.919031 -117.617686 1330319308 2173351 472 101 769 145 Unrestricted 23.28 Metagenome 3300005725 *Microbiome Permanent Draft Microbial communities of deep water horizon oil spill from Gulf of Mexico naphthalene enriched communities from Deep Water Horizon Oil spill University of Texas, Austin 3300005725 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes acidophile@gmail.com Brett Baker No Environmental Aquatic Coastal Marine Unclassified Oil-contaminated sea surface 28.06958 -88.37225 26223463 27566 0 0 2 0 0.0 Metagenome 3300021959 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D DOE Joint Genome Institute (JGI) 3300021959 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Unclassified Marine Unclassified Estuarine water 38.0283 -122.37 1458176587 3037663 607 188 856 309 SRX4052299 Unrestricted 16.25 Metagenome 3300003976 *Microbiome Permanent Draft Soil microbial communities from NGEE-Artic Barrow Site, Alaska, USA Soil microbial communities from Barrow, Alaska NGEE-2011 Yale School of Medicine 3300003976 Metagenome Analysis Megahit released per JGI data release policy No Yes ntas@lbl.gov Neslihan Tas No Environmental Terrestrial Unclassified Soil Unclassified Soil 3382450 4620 1 0 1 0 0.0 Metagenome 3300049994 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Sediment-water slurry microbial communities from hot spring in Yellowstone National Park, WY, USA - Buffalo_pool_avicel_inc_2 DOE Joint Genome Institute (JGI) 3300049994 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Sediment-water slurry 44.5324 -110.7974 203388630 324695 103 2 160 1 Restricted 462.53 Metagenome 3300036539 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10WB15 DOE Joint Genome Institute (JGI) 3300036539 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 186368294 502997 346 22 629 31 SRX8379129 Unrestricted 5.26 Metagenome 3300049372 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MC9 DOE Joint Genome Institute (JGI) 3300049372 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 65606855 153272 269 10 576 19 Unrestricted 21.85 Metagenome 3300059703 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.743 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059703 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 180170925 418494 194 20 330 54 SRX2753575 Unrestricted 0.0 Metagenome 2043231002 *Microbiome Permanent Draft Marine microbial communities from the Landsort deep, Baltic Sea 10 m water depth Soedertoern University 2043231002 Metagenome Analysis Newbler released per JGI data release policy No Yes petter.thureborn@sh.se Petter Thureborn No Environmental Aquatic Oceanic Marine Unclassified Marine 58.58333333 18.23333333 49057896 110582 74 0 129 0 0.0 Metagenome 3300011374 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01013 Weill Cornell Medical College 3300011374 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.58 -73.82 12907599 17753 16 0 16 1 SRX822975 0.0 Metagenome 3300011992 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A23_65cm_12M University of Tennessee 3300011992 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 198310639 454309 64 4 128 3 SRX710608 0.0 Metagenome 3300006612 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_Marker33_DNA 3300006612 Metagenome Analysis CLC genomics wb7 released by Caroline Fortunato No Yes cfortunato@mbl.edu, cfortunato@gmail.com; randerson@carleton.edu; elks@mit.edu Caroline Fortunato, Caroline Fortunato; Rika Anderson; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 210579501 516104 214 17 355 31 0.0 Metagenome 3300041819 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - TR_32_wk_4 DOE Joint Genome Institute (JGI) 3300041819 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9707 -107.059 78413962 246018 172 20 322 20 SRX14809572 Unrestricted 5.92 Metagenome 3300046616 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere DOE Joint Genome Institute (JGI) 3300046616 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5881 -123.194 990473228 1609298 388 56 649 81 Unrestricted 20.23 Metagenome 3300046471 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere DOE Joint Genome Institute (JGI) 3300046471 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5882 -123.1931 537571158 762226 171 31 253 43 Unrestricted 28.18 Metagenome 3300043394 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Arapahoe, Wyoming, United States - littlewindriver_2019_sw_WHONDRS-S19S_0009 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043394 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 42.9875 -108.3982 489670728 817000 186 38 276 50 Unrestricted 30.61 Metagenome 3300011153 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00411 Weill Cornell Medical College 3300011153 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.67 -73.98 25164310 38862 17 0 24 0 SRX822381 0.0 Metagenome 3300013483 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00870 Weill Cornell Medical College 3300013483 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.69 -73.84 8937840 16712 9 0 15 0 SRX822836 0.0 Metagenome 7000000511 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765094712 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000511 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 92402649 143507 0 0 0 0 0.0 Metagenome 3300007283 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_250_ad_252m_LV_B DOE Joint Genome Institute (JGI) 3300007283 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -0.015038 -22.962334 708450594 1476036 659 37 1143 68 SRX2719401 Unrestricted 0.0 Metagenome 3300038842 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample05 King Abdulaziz City for Science and Technology (KACST) 3300038842 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 17.59 39.47 20667508 55250 45 0 74 0 SRX1097609 0.0 Metagenome 3300050125 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim2 1-5 DOE Joint Genome Institute (JGI) 3300050125 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.353634 19.04734 478096430 743739 150 21 252 40 Restricted 12.24 Metagenome 3300028820 *Microbiome Permanent Draft Microbial communities from Yellowstone National Park hot springs 2017 Hot spring sediment microbial communities from Mixy Fritzy, Yellowstone National Park, USA - 170630D University of Minnesota 3300028820 Metagenome Analysis SPAdes v. 3.11.0 released by JGI data releasing policy Yes Yes trinityh@umn.edu Trinity Hamilton No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.6877 -110.7279 7.298 213192026 395775 142 0 173 0 0.0 Metagenome 3300069529 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_035-O-20170801-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069529 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 106100011 304409 110 13 179 21 0.0 Metagenome 3300056721 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHL_01 DOE Joint Genome Institute (JGI) 3300056721 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.40849 -82.168434 64045393 106259 3 5 2 10 Restricted 0.0 Metagenome 3300012625 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100556 University of Pennsylvania 3300012625 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 20069695 51112 75 9 134 16 SRX756198 0.0 Metagenome 3300044952 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater bacterial communities from Lake Mendota, Wisconsin, United States - ME_2020-08-25_15m_Bacteria_A DOE Joint Genome Institute (JGI) 3300044952 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 763196049 1145152 273 9 380 13 Unrestricted 17.58 Metagenome 3300005081 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Hydrocarbon microbial Community from Halfdan Field, North Sea, Denmark - MHBB9 Shell Corporation 3300005081 Metagenome Analysis megahit Released on PI's request No Yes ebalsop@lbl.gov Eric Alsop No Environmental Aquatic Deep subsurface Marine Hydrocarbon water 55.49 7.42 551397743 1566696 2839 7 6646 93 0.0 Metagenome 3300029749 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37299R1 Beijing Genomics Institute (BGI) 3300029749 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 251407050 323129 197 2 273 1 0.0 Metagenome 3300027527 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027527 Metagenome Analysis spades v. 3.11.1 Yes Yes cpan@ou.edu Chongle Pan No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 9.1086 -79.8436 237702869 659900 213 7 342 13 SRX2779534 Unrestricted 0.0 Metagenome 3300010370 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNA DOE Joint Genome Institute (JGI) 3300010370 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes bcampb7@clemson.edu Barbara Campbell Yes 29703736 Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 39.2637 -76.0017 1353111469 3096519 735 28 1219 64 SRX2526849 Unrestricted 0.0 Metagenome 3300021512 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-0-1_MG DOE Joint Genome Institute (JGI) 3300021512 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.0114 -110.5931 346764346 732227 334 4 573 7 SRX3982094 Unrestricted 14.89 Metagenome 3300035285 *Microbiome Permanent Draft Extreme environments viral communities from various locations Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 485_3000 DOE Joint Genome Institute (JGI) 3300035285 Metagenome Analysis spades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified filtered seawater 4.0943 -41.4341 275395475 779709 15 11 19 17 SRX7709942 Unrestricted 64.33 Metagenome 3300045873 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from the Seven Mile Hole Area, Yellowstone National Park, WY, United States - MSUNE_MH_01 University of Wisconsin, Madison 3300045873 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.7536 -110.40418 374269206 743921 246 12 443 2 0.0 Metagenome 3300011398 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT600_2 DOE Joint Genome Institute (JGI) 3300011398 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9233 -106.9516 167502970 393993 214 14 510 16 SRX3368947 Unrestricted 0.0 Metagenome 3300034169 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_15 DOE Joint Genome Institute (JGI) 3300034169 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9142 -147.835 681257525 1569462 618 9 1040 13 SRX7633783 Unrestricted 7.34 Metagenome 3300040280 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Moab, Southern Rockies & Colorado Plateau, UT, USA - MOAB_003-M-20170522-COMP-DNA1 Battelle Memorial Institute 3300040280 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.24833 -109.38827 6777667 21163 69 4 142 7 0.0 Metagenome 3300025337 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jun07 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025337 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 37947686 83593 45 27 70 72 SRX2565200 Unrestricted 0.0 Metagenome 3300009595 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3635_2500 DOE Joint Genome Institute (JGI) 3300009595 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic 1.4995 -36.9978 41599216 104070 48 22 42 25 SRX2753928 Unrestricted 0.0 Metagenome 3300037171 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 S1 30-34 DOE Joint Genome Institute (JGI) 3300037171 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3531 19.0474 644403474 1090729 206 4 314 10 SRX8144746 Unrestricted 16.69 Metagenome 3300000379 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from University of Liverpool Illumina_50ng_assembled University of Liverpool 3300000379 Metagenome Analysis Meta-IDBA released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 24402293 31948 177 0 315 0 0.0 Metagenome 3300028539 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 3 Selected contigs with viral hallmark genes 2 Autonomous University of Barcelona 3300028539 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 953530 1412 0 0 0 0 0.0 Metagenome 3300040331 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_046-M-20140716-COMP-DNA1 Argonne National Laboratory 3300040331 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 4835673 13552 17 0 30 1 ERX2133946 0.0 Metagenome 3300028485 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C36 DOE Joint Genome Institute (JGI) 3300028485 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Elk feces 38.04 -122.5 260506115 484409 271 54 363 67 SRX5090784, SRX5090783 Unrestricted 0.0 Metagenome 3300037588 *Microbiome Permanent Draft Rhizosphere microbial communities from salt marsh grasses in Alabama, United States Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA DOE Joint Genome Institute (JGI) 3300037588 Metagenome Analysis spades v. 3.12.0 Yes Yes omason@fsu.edu Olivia Mason No Host-associated Plants Rhizosphere Roots Unclassified rhizosphere 30.2619 -88.2383 286688884 469014 172 2 309 2 SRX7525035 Unrestricted 15.28 Metagenome 7000000063 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000063 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 108359052 194294 0 0 0 0 0.0 Metagenome 7000000324 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human hard palate microbial communities from NIH, USA - visit 2, subject 765560005 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000324 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Hard palate Human 39.0042816 -77.1012173 65280762 130773 0 0 0 0 0.0 Metagenome 3300048805 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-F1(2) 1-5 DOE Joint Genome Institute (JGI) 3300048805 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0433 323941493 546748 211 7 336 13 Restricted 14.02 Metagenome 3300034091 *Microbiome Permanent Draft Lab enriched peat soil microbial communities from two peatlands near Ithaca, NY, United States Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N DOE Joint Genome Institute (JGI) 3300034091 Metagenome Analysis spades v. 3.13.0 Yes Yes rer26@cornell.edu Ruth Richardson No Environmental Terrestrial Wetlands Soil Peat peat soil 42.5488 -76.2662 1498598069 2738533 713 47 1141 75 SRX7543022 Unrestricted 0.0 Metagenome 3300026677 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK08-A (SPAdes) DOE Joint Genome Institute (JGI) 3300026677 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.4 8698947 27362 57 6 103 6 SRX1991359 Unrestricted 0.0 Metagenome 3300001790 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR11_8B_AprC DOE Joint Genome Institute (JGI) 3300001790 Metagenome Analysis Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 40981695 76643 33 0 53 0 SRX3318253 Unrestricted 0.0 Metagenome 3300005197 *Microbiome Permanent Draft Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich - 01I-100 University of Cincinnati 3300005197 Metagenome Analysis Velvet v. 0.7.57 released per JGI data release policy No Yes rlamendella@lbl.gov Regina Lamendella No Environmental Aquatic Groundwater Freshwater Contaminated Groundwater 40.0 -74.5 0 0 0 0 0 0 0.0 Metagenome 3300025459 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_8_150 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025459 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 247273015 437588 113 3 169 6 SRX3003289 Unrestricted 0.0 Metagenome 3300025824 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_330m (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025824 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; shallam@interchange.ubc.ca; jkjarett@lbl.gov Ramunas Stepanauskas; Steven Hallam; Jessica Jarett No Environmental Aquatic Lake Freshwater Unclassified freshwater 50.0621 -124.7214 341382689 830543 420 0 674 3 SRX3570958 Unrestricted 16.74 Metagenome 3300014668 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00530 Weill Cornell Medical College 3300014668 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.71 -73.94 36035922 49892 20 0 35 0 SRX822498 0.0 Metagenome 3300000778 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 hypolimnion v2 (version 2) DOE Joint Genome Institute (JGI) 3300000778 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.0412 -89.6864 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300029656 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36697 Beijing Genomics Institute (BGI) 3300029656 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 120833959 137707 76 3 105 1 0.0 Metagenome 3300000212 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 120m DOE Joint Genome Institute (JGI) 3300000212 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 176866804 339529 156 1 251 1 Unrestricted 0.0 Metagenome 3300022822 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #293 DOE Joint Genome Institute (JGI) 3300022822 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 72848168 142359 21 0 15 0 SRX4396752 Unrestricted 48.79 Metagenome 3300008101 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 159227541 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008101 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 183054793 227055 155 0 206 0 0.0 Metagenome 3300012273 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 2 OAHU.JWI-85 metaG DOE Joint Genome Institute (JGI) 3300012273 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms 21.3935 -157.7156 815062035 1197857 10 26 18 37 SRX3289980 Unrestricted 0.0 Metagenome 3300011799 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metalplastic -P00680 Weill Cornell Medical College 3300011799 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface City subway metal/plastic 40.78 -73.97 36716227 60013 20 0 27 0 SRX822647 0.0 Metagenome 3300029348 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 044_10_29_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029348 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 176644158 228493 215 0 308 0 0.0 Metagenome 3300006439 *Microbiome Permanent Draft Microbial communities from manure storage tank from Sherbrooke, QC, Canada Microbial communities from pig manure storage tank from Sherbrooke, QC, Canada, enriched culture A10 Agriculture and Agri-Food Canada 3300006439 Metagenome Analysis Trinity released per JGI data release policy No Yes jennifer.town@agr.gc.ca, Jennifer.town@agr.gc.ca Jennifer Town No Engineered Solid waste Unclassified Animal waste Unclassified Manure 45.4 -71.9 33443576 65542 54 2 101 6 0.0 Metagenome 3300001074 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN397 DOE Joint Genome Institute (JGI) 3300001074 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Soil 44.20517707 -122.1284473 7442356 24023 38 1 75 3 SRX3311794 Unrestricted 0.0 Metagenome 3300070256 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_013-M-20190828-COMP-DNA1 3300070256 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 18488328 55767 44 5 63 7 0.0 Metagenome 3300042383 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME25Jul2011-rr0845 DOE Joint Genome Institute (JGI) 3300042383 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 858439222 1370220 373 47 532 82 Unrestricted 18.32 Metagenome 3300012494 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.yng.030610 DOE Joint Genome Institute (JGI) 3300012494 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 104796583 278669 225 31 435 48 SRX3527457 Unrestricted 0.0 Metagenome 3300014615 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00464 Weill Cornell Medical College 3300014615 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.68 -73.98 8655163 15101 5 0 16 0 SRX822433 0.0 Metagenome 3300064909 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 703 in Westerose, Alberta, Canada - S00JY_0285 Microbiome Insights 3300064909 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.55466504 -113.5615402 97076335 144637 60 2 109 3 0.0 Metagenome 3300050217 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Leeds, Wisconsin, USA - 38_767_WI_DR_0cm_c2_T1_18O DOE Joint Genome Institute (JGI) 3300050217 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 43.30485 -89.3309 893566546 1562011 376 6 593 8 Restricted 13.84 Metagenome 3300029567 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P013V6 Beijing Genomics Institute (BGI) 3300029567 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 186932566 239003 143 0 215 0 0.0 Metagenome 7000000322 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 764083206 replicate 1 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000322 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 365409 833 0 0 0 0 SRX024892 0.0 Metagenome 3300037349 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 S2 1-5 DOE Joint Genome Institute (JGI) 3300037349 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0471 762215314 1422770 287 38 442 62 SRX10078868 Unrestricted 9.37 Metagenome 3300040796 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Salins du Lion, Vitrolles, France - D326 Genopole Toulouse Midi-Pyrenees 3300040796 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.45 5.2264 331920181 652638 324 26 627 35 0.0 Metagenome 3300020586 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Lodgepole_Yose_3 DOE Joint Genome Institute (JGI) 3300020586 Metagenome Analysis spades v. 3.10.1 Yes Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.6622 -119.6197 274279797 560921 18 70 22 66 SRX4002556 Unrestricted 53.75 Metagenome 3300014069 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00649 Weill Cornell Medical College 3300014069 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.78 -73.96 30159695 43525 25 0 29 0 SRX822616 0.0 Metagenome 3300006745 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160158126 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006745 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 101704516 140940 67 0 101 0 0.0 Metagenome 3300048563 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Woodchip biofilm microbial communities from lab scale WBR in Cornell University, Ithaca, NY, USA - rep3_cs_p1_w6 DOE Joint Genome Institute (JGI) 3300048563 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 845300080 1588774 455 17 761 28 Unrestricted 9.83 Metagenome 3300009886 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY5 University of New South Wales 3300009886 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 27072513 52556 26 0 38 0 0.0 Metagenome 3300026301 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026301 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 27843720, 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.73825 -123.6301 460883150 883430 330 15 579 24 SRX2562382 Unrestricted 0.0 Metagenome 3300033475 *Microbiome Permanent Draft Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC DOE Joint Genome Institute (JGI) 3300033475 Metagenome Analysis spades v. 3.12.0 Yes Yes colin.averill@usys.ethz.ch; jmtalbot@bu.edu Colin Averill; Jennifer Bhatnagar No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 36.0 -78.0 2866898987 4947995 2122 97 3416 165 SRX5787952 Unrestricted 22.58 Metagenome 3300004060 *Microbiome Draft Cold seep microbial communities from the Ulleung Basin, East Sea, Korea Cold seep microbial communities from the Ulleung Basin, East Sea, Korea - Hemire mound 3300004060 Metagenome Analysis CLC genomics workbench 6 released by JGI data releasing policy No Yes trycell@daum.net Jin-Woo Lee No Environmental Aquatic Cold seeps Marine Unclassified Cold seep 36.098 130.0788 0 0 0 0 0 0 0.0 Metagenome 7000000403 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 159713063 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000403 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 77720874 122363 0 0 0 0 0.0 Metagenome 3300000867 *Microbiome Permanent Draft Freshwater and marine microbial communities from the Columbia River, USA, of estuaries and plumes across salinity gradients Estuary microbial communities from the Columbia River - metatranscriptome 5 PSU University of Maryland 3300000867 Metagenome Analysis released per PI's request No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato Yes 26536246 Environmental Aquatic Intertidal zone Marine Estuary Freshwater and marine 46.235 -123.91 58151542 137277 619 331 2230 522 0.0 Metagenome 3300000141 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P4 1300m DOE Joint Genome Institute (JGI) 3300000141 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 48.65 -126.666667 115006357 256292 116 33 222 60 Unrestricted 0.0 Metagenome 3300046789 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 soil DOE Joint Genome Institute (JGI) 3300046789 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.587702 -123.193614 6.92 150447773 254829 137 11 257 16 Unrestricted 19.04 Metagenome 3300014949 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS65_12 University of Hohenheim 3300014949 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 97823717 161251 72 0 124 0 0.0 Metagenome 3300000214 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 54 02/08/11 200m DOE Joint Genome Institute (JGI) 3300000214 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 97968869 186731 62 2 111 0 Unrestricted 0.0 Metagenome 2166559023 *Microbiome Permanent Draft Freshwater microbial communities from LaBonte Lake, Laramie, Wyoming, USA Fresh water microbial communities from LaBonte Lake, Laramie, Wyoming, sample from peak-bloom 1 DOE Joint Genome Institute (JGI) 2166559023 Metagenome Analysis Newbler v. 2.5 released per Simon -- IMGSUPP2953 No Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Loam Soil Grasslands Freshwater 41.321 -105.586 140026676 377430 303 31 520 42 0.0 Metagenome 3300022459 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Lake Baghdad, Rottnest Island (WA - Australia) - LBBRO1 JM19 AGRF 3300022459 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.994794 115.523776 59794576 99943 44 1 72 2 0.0 Metagenome 3300002197 *Microbiome Permanent Draft Freshwater microbial community from Sao Paulo Zoo Lake, Brazil Freshwater microbial communities from San Paulo Zoo lake, Brazil - DEC 2012 3300002197 Metagenome Analysis SoapDeNovo released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Lake -23.651072 -46.620675 100224048 293240 3 0 41 4 0.0 Metagenome 3300022824 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - IR.B.S.T-25 DOE Joint Genome Institute (JGI) 3300022824 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 56029742 143886 117 22 170 37 SRX4415253 Unrestricted 20.05 Metagenome 3300043670 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 410-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043670 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9748 -107.0655 396384301 1103942 436 11 813 25 Unrestricted 6.99 Metagenome 3300026113 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3737_250 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026113 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic 6.4994 -48.0 37598850 73940 34 6 37 10 SRX2753933 Unrestricted 0.0 Metagenome 3300046767 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mississippi River, Louisiana, USA - NASQAN2011_198 DOE Joint Genome Institute (JGI) 3300046767 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 30.7585 -91.3959 19846075 62537 63 10 121 13 Unrestricted 0.0 Metagenome 3300025822 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025822 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 394035797 749757 216 66 373 89 SRX2999664 Unrestricted 0.0 Metagenome 3300021321 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1 DOE Joint Genome Institute (JGI) 3300021321 Metagenome Analysis spades v. 3.11.1-check Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Host-associated Plants Nodule Roots Unclassified root nodules 34.06 -118.44 499543966 456364 26 32 25 66 SRX4051790 Unrestricted 112.65 Metagenome 3300000889 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 P3 (4) DOE Joint Genome Institute (JGI) 3300000889 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 12697936 11871 0 0 0 0 SRX3311542 Unrestricted 0.0 Metagenome 3300015273 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_09MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015273 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 77785207 149249 14 42 24 77 SRX3921976 Unrestricted 14.87 Metagenome 3300029589 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35549 Beijing Genomics Institute (BGI) 3300029589 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 244143368 308389 239 1 351 0 0.0 Metagenome 3300044650 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4E DOE Joint Genome Institute (JGI) 3300044650 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Unclassified Roots Unclassified Root 14.75 -16.85 926312671 1396645 26 30 67 66 Unrestricted 26.97 Metagenome 3300012492 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.yng.030610 DOE Joint Genome Institute (JGI) 3300012492 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 101435921 273965 228 28 491 52 SRX3527435 Unrestricted 0.0 Metagenome 3300013096 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 DOE Joint Genome Institute (JGI) 3300013096 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 333801281 819839 613 22 1200 50 SRX4062629, SRX4062630 Unrestricted 0.0 Metagenome 3300014087 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00401 Weill Cornell Medical College 3300014087 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.71 -73.95 22826236 31410 23 0 29 0 SRX822372 0.0 Metagenome 3300006896 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Final time point T34 (3) (BES) benzoate enrichments of Methanogenic microbial communities using Athabasca oil sands as inoculum Shell Corporation 3300006896 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 65566820 101832 79 0 85 0 0.0 Metagenome 3300020058 *Microbiome Permanent Draft Microbial community shotgun study from Ayvalik Saltern, Turkey Non-marine hypersaline microbial communities of Ayvalik Saltern, Turkey - BM8 Argonne National Laboratory 3300020058 Metagenome Analysis IDBA_UD released by JGI data releasing policy No Yes albayrakece@gmail.com ece albayrak No Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Unclassified brine water 39.3192 26.6924 179923541 277228 100 1 141 1 0.0 Metagenome 3300001072 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized -NN628 DOE Joint Genome Institute (JGI) 3300001072 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 334290 1184 25 0 32 0 SRX1987006 Unrestricted 0.0 Metagenome 3300009996 *Microbiome Finished Microbiology of confined controlled built environments Intensive care unit floor microbial communities from the state hospital of Graz (LKH), Austria - intensive care unit ICU Eurofins MWG Operon 3300009996 Metagenome Analysis Ray Meta released per JGI data release policy No Yes alexander.mahnert@gmail.com Alexander Mahnert No Engineered Built environment ICU Hospital Floor built environment 47.08136 15.465117 14953700 16123 7 4 7 3 0.0 Metagenome 3300069271 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Guanica State Forest and Biosphere Reserve, Puerto Rico - GUAN_003-M-20210922-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069271 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tropical forest Soil Unclassified Terrestrial soil 17.973138 -66.861701 2397426858 5771484 1351 13 2752 25 0.0 Metagenome 3300043392 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Woodlawn, Maryland, United States - deadrun_2019_sw_WHONDRS-S19S_0006 DOE Joint Genome Institute (JGI) 3300043392 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 39.3118 -76.7174 201092269 301905 166 80 206 111 Unrestricted 34.78 Metagenome 2014031003 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP3 Monarch Geyser, Norris Geyser Basin v1 DOE Joint Genome Institute (JGI) 2014031003 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23720654 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.7242925 -110.7056131 4 12778632 20229 0 0 0 0 Unrestricted 0.0 Metagenome 3300001286 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - Naphthalene biodegradation metagenome 12C5dose DOE Joint Genome Institute (JGI) 3300001286 Metagenome Analysis No Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.292222 -73.604444 15388853 39109 43 1 44 2 Unrestricted 0.0 Metagenome 3300013631 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00976 Weill Cornell Medical College 3300013631 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.63 -73.82 9279851 14448 11 0 8 0 SRX822938 0.0 Metagenome 3300029435 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 027_10_29_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029435 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 226643708 315055 286 0 350 0 0.0 Metagenome 3300053075 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 soil DOE Joint Genome Institute (JGI) 3300053075 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.587648 -123.193914 6.48 428843429 808739 195 7 371 14 Unrestricted 22.11 Metagenome 3300046388 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_200205.NP1 DOE Joint Genome Institute (JGI) 3300046388 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 726403637 1588641 552 106 847 195 Unrestricted 11.19 Metagenome 3300025165 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1 (version 2) DOE Joint Genome Institute (JGI) 3300025165 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 26033198 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 1165154534 2619807 1050 14 1866 26 SRX1983667 Unrestricted 0.0 Metagenome 3300018490 *Microbiome Finished Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India - point GR3 Spades_99 Life Technologies 3300018490 Metagenome Analysis SPAdes 3.10.1 released by JGI data releasing policy No Yes sarkar.jayeeta12@gmail.com, psar@hijli.iitkgp.ernet.in Pinaki Sar No Engineered Built environment Petroleum sludge Oil refinery Unclassified petroleum sludge 26.18471 91.80725 190434919 354594 120 1 160 2 SRX2510723 0.0 Metagenome 3300049153 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 306-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300049153 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.907 -107.0292 294474976 811159 365 42 693 72 Unrestricted 6.57 Metagenome 3300024289 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h DOE Joint Genome Institute (JGI) 3300024289 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 207654420 458033 216 32 346 56 SRX4547319 Unrestricted 12.65 Metagenome 3300044954 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Towuti Lake, South Sulawesi, Indonesia - Towuti_70m_2014 DOE Joint Genome Institute (JGI) 3300044954 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.7 121.4 938832723 1589287 532 37 846 62 Unrestricted 19.75 Metagenome 3300025118 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025118 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.205 -77.515 399257649 892004 54 0 79 0 SRX2926811 Unrestricted 0.0 Metagenome 3300048011 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_200429.NP1 DOE Joint Genome Institute (JGI) 3300048011 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 583845346 1229134 388 60 544 115 Unrestricted 14.07 Metagenome 3300054055 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_4_10 re-annotation DOE Joint Genome Institute (JGI) 3300054055 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 194279883 530264 215 22 448 29 SRX3001582 0.0 Metagenome 3300000033 *Microbiome Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil v4 (version 4) DOE Joint Genome Institute (JGI) 3300000033 Metagenome Analysis Artifact filter, partition at k=32, assemble with Velvet at k19-45, Minimus2 released based on JGI ITS No Yes janet.jansson@pnnl.gov Janet Jansson Yes 30158906 Environmental Terrestrial Unclassified Soil Grasslands Soil 39.0042816 -77.1012173 1297735068 3094806 35 5 207 22 Unrestricted 0.0 Metagenome 3300008499 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159490532 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008499 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 95252405 115475 82 0 102 0 0.0 Metagenome 3300038844 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample07 King Abdulaziz City for Science and Technology (KACST) 3300038844 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 17.59 39.47 22544370 62874 40 0 85 0 SRX1097616 0.0 Metagenome 3300028157 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_26JUN2017_LD1 DOE Joint Genome Institute (JGI) 3300028157 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 6708940 12582 1 14 2 16 SRX5345793 Unrestricted 45.19 Metagenome 3300002081 *Microbiome Permanent Draft Saline desert soil microbial communities from Kutch, Gujarat, India Saline desert soil microbial communities from Kutch, Gujarat, India - S5 3300002081 Metagenome Analysis Released per request from Aanal Pandit - March 31 2014 No Yes ggi_gsbtm@yahoo.com Snehal Bagatharia No Environmental Terrestrial Unclassified Soil Desert Saline desert soil 23.834889 69.518917 0 0 0 0 0 0 0.0 Metagenome 3300032285 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 07-033 Genome Quebec 3300032285 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.415881 -66.943059 695246490 1406895 370 101 614 165 0.0 Metagenome 3300042873 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368 NMDC pilot DOE Joint Genome Institute (JGI) 3300042873 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040645 -106.94847615 912464417 2266922 547 8 1038 16 SRX5355415 0.0 Metagenome 3300021514 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4869-30-0-1_MG DOE Joint Genome Institute (JGI) 3300021514 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.0074 -110.591 378970519 782903 341 8 550 16 Unrestricted 10.08 Metagenome 3300010990 *Microbiome Permanent Draft CWC Coastal Marshes ELM10016_Bassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method B (2X150bp) Molecular Research LP (MR DNA) 3300010990 Metagenome Analysis SPAdes 3.9.0 released by JGI data releasing policy No Yes aengel1@utk.edu Annette Engel No Environmental Aquatic Wetlands Freshwater Sediment sediment 29.45497 -89.758933 7194568 14305 17 1 27 2 0.0 Metagenome 3300011978 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S04-03-D University of California, Los Angeles 3300011978 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 154842567 273712 138 5 237 3 SRX858936 0.0 Metagenome 3300022337 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Lake Vincent, Rottnest Island (WA - Australia) - LVBGP1 JM31 AGRF 3300022337 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.999838 115.51448 29828272 57716 25 0 38 0 0.0 Metagenome 3300017707 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.N DOE Joint Genome Institute (JGI) 3300017707 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.2382 -86.2805 167852994 407860 6 0 7 0 SRX7205566 Unrestricted 90.75 Metagenome 3300028706 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_100m DOE Joint Genome Institute (JGI) 3300028706 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified marine 48.6 -123.5 374581187 691249 208 3 320 6 SRX5337929 Unrestricted 26.84 Metagenome 3300000999 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP1494 DOE Joint Genome Institute (JGI) 3300000999 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -25.49 -179.52 10213671 27509 45 0 85 0 SRX1982422 Unrestricted 0.0 Metagenome 3300024267 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 28D DOE Joint Genome Institute (JGI) 3300024267 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 211572605 442640 138 25 224 54 SRX4457822 Unrestricted 14.97 Metagenome 3300071111 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_003-O-20180808-COMP-DNA1 3300071111 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 1831100 6284 25 3 38 2 0.0 Metagenome 3300004369 *Microbiome Permanent Draft Saline microbial communities from the South Caspian sea Saline microbial communities from the South Caspian sea - cas-15 Beijing Genomics Institute (BGI) 3300004369 Metagenome Analysis IDBA released per JGI data release policy No Yes chaji.ml@gmail.com Maliheh Mehrshad No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline 41.916215 50.672019 216705166 207574 51 0 35 0 0.0 Metagenome 3300012230 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100664 University of Pennsylvania 3300012230 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9491639 27222 19 0 34 0 SRX756430 0.0 Metagenome 3300021366 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2016_4, permeate Toyama Prefectural University 3300021366 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Sediment marine 37.01526 137.61294 44087984 128710 30 3 48 4 0.0 Metagenome 3300031726 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1 DOE Joint Genome Institute (JGI) 3300031726 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0477 7068032155 16933770 3318 288 5759 457 SRX5358021 Unrestricted 7.33 Metagenome 3300070375 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_002-M-20180711-COMP-DNA1 3300070375 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 2264405 7407 21 2 35 6 0.0 Metagenome 3300056617 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.16W.15 SIP fraction DOE Joint Genome Institute (JGI) 3300056617 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 56991873 108948 39 7 65 12 Unrestricted 15.51 Metagenome 3300014742 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark - 1612-PRJ1066-RL-Sewage-107_S11 Technical University of Denmark 3300014742 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Unclassified Sewage Unclassified Sewage 55.694986 12.615026 42193422 105738 84 7 168 7 ERX1596347 0.0 Metagenome 3300002239 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2 DOE Joint Genome Institute (JGI) 3300002239 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 322100106 931762 863 55 1503 96 SRX1989939, SRX1989940, SRX1989941, SRX1989942 Unrestricted 0.0 Metagenome 3300026844 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgLAA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026844 Metagenome Analysis spades v. 3.11.1 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 28024915 96658 98 4 195 5 SRX2521240 Unrestricted 0.0 Metagenome 3300043481 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 032-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043481 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9576 -106.9856 244872323 684886 519 48 1002 88 Unrestricted 7.89 Metagenome 3300070240 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_008-M-20200716-COMP-DNA1 3300070240 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 64744909 189083 85 14 180 19 0.0 Metagenome 3300027022 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and M2 (2) (SPAdes) DOE Joint Genome Institute (JGI) 3300027022 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 54104400 73757 25 0 26 0 SRX3311661 Unrestricted 0.0 Metagenome 3300037040 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-X0 DOE Joint Genome Institute (JGI) 3300037040 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0475 453720592 764356 125 4 235 12 SRX8137582 Unrestricted 18.02 Metagenome 3300016294 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 DOE Joint Genome Institute (JGI) 3300016294 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Unclassified Soil 18.321 -65.8172 3295820490 7207681 1207 60 2253 94 SRX5337889, SRX3604458 Unrestricted 0.0 Metagenome 3300048834 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Sediment microbial communities from brackish wetlands in San Jose, California, USA - ROC5_1 DOE Joint Genome Institute (JGI) 3300048834 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Intertidal zone Marine Salt marsh sediment Sediment 37.427598 -121.938678 2142208079 3028435 715 85 976 112 Unrestricted 23.78 Metagenome 3300033628 *Microbiome Permanent Draft Metagenomic SGS 2x251 Cornfield soil microbial communities from Madison, WI, USA - CF8 Illumina 3300033628 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Agricultural land Soil 43.056543 -89.477477 472049660 1766393 199 13 501 17 0.0 Metagenome 3300001855 *Microbiome Permanent Draft Marine sediment microbial communities from White Oak River estuary, North Carolina Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 DOE Joint Genome Institute (JGI) 3300001855 Metagenome Analysis Yes Yes acidophile@gmail.com Brett Baker No Environmental Aquatic Intertidal zone Marine Estuary: Microbial mat Marine sediment 34.640199 -77.109447 303084940 795716 352 11 656 8 SRX3317013, SRX3317014 Unrestricted 0.0 Metagenome 3300059451 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.16W.11 SIP fraction DOE Joint Genome Institute (JGI) 3300059451 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 209327584 384470 155 25 283 40 Unrestricted 0.0 Metagenome 3300070596 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_007-M-20190620-COMP-DNA1 Battelle Memorial Institute 3300070596 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 45.850153 -121.989672 5.12-5.57 29649080 88275 49 14 106 24 0.0 Metagenome 3300039176 *Microbiome Finished Marine algae associated bacterial community from Sydney, Australia Marine algae associated bacterial community from Sydney, Australia - Ulva australis_3R2 w/o D323 Ramaciotti Centre for Genomics 3300039176 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes j.nappi@unsw.edu.au Jadranka Nappi No Host-associated Algae Unclassified Unclassified Unclassified Marine -33.990304 151.231529 485443571 675631 98 11 194 18 0.0 Metagenome 3300009810 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S3_20_30 DOE Joint Genome Institute (JGI) 3300009810 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen Yes 29920461 Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228508 -119.2716818 152855265 340742 166 6 349 4 SRX2523283 Unrestricted 0.0 Metagenome 3300002725 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A2w-12 DOE Joint Genome Institute (JGI) 3300002725 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 732895 2417 31 2 49 6 SRX1991184 Unrestricted 0.0 Metagenome 2043231004 *Microbiome Permanent Draft Marine microbial communities from the Landsort deep, Baltic Sea Sediment 2 Soedertoern University 2043231004 Metagenome Analysis Newbler released per JGI data release policy No Yes petter.thureborn@sh.se Petter Thureborn No Environmental Aquatic Oceanic Marine Sediment Marine 58.58333333 18.23333333 49174289 118155 56 0 102 0 0.0 Metagenome 3300011372 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00072 Weill Cornell Medical College 3300011372 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.62 -73.96 12336711 17199 4 0 5 0 SRX822071 0.0 Metagenome 3300020510 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 06JUL2010 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020510 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 98024838 189164 100 50 126 77 SRX1988892 Unrestricted 0.0 Metagenome 3300011994 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A7_65cm_12M University of Tennessee 3300011994 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 245598513 516951 56 12 130 15 SRX710616 0.0 Metagenome 3300006614 *Microbiome Permanent Draft Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia - TJ05 time point Australian Centre for Ecogenomics 3300006614 Metagenome Analysis CLC released per JGI data release policy No Yes crinke@lbl.gov Christian Rinke No Environmental Aquatic Coastal Marine Unclassified marine surface water -34.1192 151.2267 85133347 117515 28 1 23 1 0.0 Metagenome 3300047457 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Susquehanna River, Maryland, USA - NASQAN2016_083 DOE Joint Genome Institute (JGI) 3300047457 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 39.6579 -76.1741 698202991 1376167 451 143 750 241 Unrestricted 23.67 Metagenome 3300049992 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Sediment-water slurry microbial communities from hot spring in Yellowstone National Park, WY, USA - Buffalo_pool_hpg_inc_2 DOE Joint Genome Institute (JGI) 3300049992 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Sediment-water slurry 44.5324 -110.7974 220401425 349865 103 0 176 0 Restricted 492.16 Metagenome 3300003396 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 PM DOE Joint Genome Institute (JGI) 3300003396 Metagenome Analysis revert back to private per Christa Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 11973419 33771 133 7 258 7 SRX2574406 Unrestricted 0.0 Metagenome 3300049374 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - 7-3 DOE Joint Genome Institute (JGI) 3300049374 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 421903673 1131377 483 14 813 24 Unrestricted 7.21 Metagenome 3300035397 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from Middle Island sinkhole, Lake Huron, Michigan, United States - MIS.2016.062E reassembly DOE Joint Genome Institute (JGI) 3300035397 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes macgregb@umn.edu; sgrim@umich.edu Barbara MacGregor; Sharon Grim No Environmental Aquatic Lake Freshwater Sediment microbial mat 45.1993 -83.3279 156804513 209993 58 10 68 10 SRX7582701 0.0 Metagenome 3300023687 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen10, Rep 2 Spades (v2) (version 2) DOE Joint Genome Institute (JGI) 3300023687 Metagenome Analysis spades v. 3.11.1-check No Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4149 -119.841 188270252 274071 169 8 207 7 SRX4038381 Unrestricted 0.0 Metagenome 3300001699 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A5-11 DOE Joint Genome Institute (JGI) 3300001699 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 638551 2295 21 0 37 0 SRX1990524 Unrestricted 0.0 Metagenome 7000000208 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158479027 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000208 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 148936373 279009 0 0 0 0 0.0 Metagenome 2124908040 *Microbiome Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Bog Site B4 v2 (version 2) DOE Joint Genome Institute (JGI) 2124908040 Metagenome Analysis Velvet released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 210467264 592834 51 0 108 0 Unrestricted 0.0 Metagenome 3300054560 *Microbiome Permanent Draft Soil microbial communities from pasture in Hopland Research and Extension Center, CA, USA Soil viral communities from pasture in Hopland Research and Extension Center, CA, USA - T2-H218O-B library kit 1SPlus DOE Joint Genome Institute (JGI) 3300054560 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes trubl1@llnl.gov Gareth Trubl No Environmental Terrestrial Pasture Soil Unclassified Soil 39.00177 -123.06967 75321375 200116 37 6 85 8 Unrestricted 254.54 Metagenome 3300045830 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_3_C DOE Joint Genome Institute (JGI) 3300045830 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 153464797 185192 102 1 123 1 Unrestricted 129.92 Metagenome 3300038301 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI147_2018_nov_100m DOE Joint Genome Institute (JGI) 3300038301 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 245588025 543928 213 30 358 44 SRX9402601 Unrestricted 9.44 Metagenome 3300010333 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG DOE Joint Genome Institute (JGI) 3300010333 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 1091061613 2525622 788 27 1493 74 SRX2525072 Unrestricted 0.0 Metagenome 3300011690 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00626 Weill Cornell Medical College 3300011690 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.83 -73.93 22877503 25200 12 0 17 0 SRX822593 0.0 Metagenome 3300038599 *Microbiome Permanent Draft Freshwater microbial communities from various watersheds in Southwestern British Columbia, Canada Freshwater microbial communities from Southwestern British Columbia, Canada - PDS_027 University of British Columbia 3300038599 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 49.0 -123.0 12149225 28437 32 0 47 0 0.0 Metagenome 3300013129 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 10cm DOE Joint Genome Institute (JGI) 3300013129 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.05 29.2062 1722383820 3620504 1540 11 2649 18 SRX3571225 Unrestricted 12.28 Metagenome 3300029402 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 081_5_2_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029402 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 145230144 185463 184 1 236 3 0.0 Metagenome 3300011884 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00493 Weill Cornell Medical College 3300011884 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.84 -73.87 46829576 76399 28 0 42 0 SRX822462 0.0 Metagenome 3300042271 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA MBR feed microbial communities from membrane bioreactor in Denver, Colorado, USA - FD_D174 DOE Joint Genome Institute (JGI) 3300042271 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Wastewater Mine water Industrial wastewater Produced water MBR feed 39.7823 -104.9101 547187095 809083 395 4 581 7 Unrestricted 19.64 Metagenome 3300011219 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00466 Weill Cornell Medical College 3300011219 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.68 -73.96 31523357 58137 22 0 39 0 SRX822435 0.0 Metagenome 3300027651 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027651 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 425272059 962470 233 38 483 57 SRX3312007 Unrestricted 0.0 Metagenome 3300037664 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR09_4 DOE Joint Genome Institute (JGI) 3300037664 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Crustal Fluids crustal fluids 47.7534 -127.7638 11418435 30446 32 0 47 1 SRX9096349 Unrestricted 250.96 Metagenome 3300000792 *Microbiome Draft Marine microbial communities from chronically polluted sediments in four geographic locations Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 02_21m DOE Joint Genome Institute (JGI) 3300000792 Metagenome Analysis released based on JGI ITS Yes Yes hdionisi@cenpat.edu.ar Hebe Dionisi No Environmental Aquatic Intertidal zone Marine Sediment Marine 59.363333 18.119167 435329878 1121357 755 62 1291 95 Unrestricted 0.0 Metagenome 3300003120 *Microbiome Permanent Draft Marine microbial communities from saline anoxic brine of the deep-sea hypersaline anoxic lake (DHAL) Thetis Extremely saline anoxic brine microbial communities from Lake Thetis, Australia 3300003120 Metagenome Analysis Newbler v. 2.5.3 Made public because these are downloaded from Genbank No Yes nckyrpides@lbl.gov Golyshin,P.N., Nikos Kyrpides No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine 34.745616 22.144127 9263949 21198 14 0 25 0 0.0 Metagenome 3300045529 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Atchafalaya River, Louisiana, USA - NASQAN2011_219 DOE Joint Genome Institute (JGI) 3300045529 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 30.6907 -91.7362 135465950 421662 302 96 556 138 Unrestricted 0.0 Metagenome 3300039051 *Microbiome Permanent Draft Deep subsurface sediment microbial communities from ODP site 1244, Eastern North Pacific, Pacific Ocean Deep subsurface sediment microbial communities from ODP site 1244, Eastern North Pacific, Pacific Ocean - F2H4-8.6mbsf Georgia Institute of Technology 3300039051 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Oceanic Marine Sediment Deep subsurface sediment 44.586 -125.12 55793097 97799 24 1 29 0 0.0 Metagenome 3300029064 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 130_B Beijing Genomics Institute (BGI) 3300029064 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 5826609 6187 5 0 2 0 ERX490946 0.0 Metagenome 3300029323 *Microbiome Permanent Draft Human fecal microbial communities from healthy and liver cirrhosis patients in Hangzhou, China Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-3_Run5 Zhejiang University 3300029323 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 30.0 120.0 121769242 155208 79 0 123 0 0.0 Metagenome 3300061625 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Yellowstone NP, Wyoming, USA - YELL_051-M-20210705-comp-1 DOE Joint Genome Institute (JGI) 3300061625 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 44.954277 -110.541571 1465893308 2677575 602 49 1073 80 Unrestricted 20.72 Metagenome 3300042946 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Oct2010-rr0392 DOE Joint Genome Institute (JGI) 3300042946 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1259498227 1798743 481 53 593 83 Unrestricted 20.15 Metagenome 3300042317 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Oct2002-rr0633 DOE Joint Genome Institute (JGI) 3300042317 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 875596056 1366430 376 46 495 59 Unrestricted 22.8 Metagenome 3300043004 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - Beaver1Rectum1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043004 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Rectum rectum 49.18 -122.54 84647894 168534 318 8 534 10 SRX8344628 Unrestricted 50.65 Metagenome 3300049609 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC24 DOE Joint Genome Institute (JGI) 3300049609 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 50458656 121325 155 4 317 6 Unrestricted 14.81 Metagenome 3300064816 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 680 in Bonnyville, Alberta, Canada - S00JY_0795 Microbiome Insights 3300064816 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 54.19361867 -110.4724417 207020179 287061 68 0 88 1 0.0 Metagenome 3300025886 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic Microbial community sample from North Sea - COGITO 998_met_10 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025886 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de; raperrier@lbl.gov; agrieb@mpi-bremen.de Hanno Teeling; Rene A. Perrier; Anissa Grieb Yes 31316134 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Pelagic marine 54.184167 7.9 1126227822 2139494 422 65 774 115 SRX802073 Unrestricted 0.0 Metagenome 3300045406 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Leaf microbial communities from farm grass in Deerfield, Massachusetts, United States - Orchardgrass_Phyllosphere_Drought2 DOE Joint Genome Institute (JGI) 3300045406 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 42.4788 -72.5788 1261440427 2248042 191 209 301 368 Unrestricted 0.0 Metagenome 3300036814 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - CB4_33.1 DOE Joint Genome Institute (JGI) 3300036814 Metagenome Analysis metaspades v. 3.13.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified Marine 75.0007 -150.0027 960430489 1852646 730 184 1164 269 SRX8377290 Unrestricted 11.83 Metagenome 3300032123 *Microbiome Permanent Draft Microbial communities from the deep biosphere Marine sediment microbial communities from the Haakon Mosby mud volcano in the Barents Sea, Arctic Ocean - PS64_326_PUC_12 re-assembly The Marine Biological Laboratory 3300032123 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Mud volcano Marine Unclassified Marine sediment 72.001 14.719 885889535 3052579 555 44 1095 69 SRX993393, SRX549997, SRX550013 0.0 Metagenome 7000000019 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 3 of subject 158883629 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000019 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2823073 5336 0 0 0 0 0.0 Metagenome 3300027010 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 64 (SPAdes) DOE Joint Genome Institute (JGI) 3300027010 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 104652154 259653 124 0 220 3 SRX1985411 Unrestricted 0.0 Metagenome 3300005567 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF82A DOE Joint Genome Institute (JGI) 3300005567 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 491884989 1741234 355 330 690 590 SRX2782313 Unrestricted 0.0 Metagenome 3300060360 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210528_01_17 DOE Joint Genome Institute (JGI) 3300060360 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 859720345 1234772 173 108 219 160 Unrestricted 20.67 Metagenome 3300042066 *Microbiome Permanent Draft Forest and sugarcane field soil microbial communities from Santa Rita do Passa , Quatro, Sao Paulo, Brazil Soil microbial communities from forest in Santa Rita do Passa , Quatro, Sao Paulo, Brazil - FOR-D_3 UNESP-FCAV 3300042066 Metagenome Analysis Custom JGI assembly. Yes Yes No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -21.708519 -47.582469 20932057 43352 20 3 35 6 SRX9176023 0.0 Metagenome 3300043462 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-384 Genome Quebec 3300043462 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 55.139884 -118.862242 1113495707 2607545 448 96 684 209 0.0 Metagenome 3300003828 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH29May08 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003828 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 42847997 100998 90 66 144 101 SRX2565525 Unrestricted 0.0 Metagenome 3300031967 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - elongated nodules DOE Joint Genome Institute (JGI) 3300031967 Metagenome Analysis spades v. 3.12.0 Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Host-associated Plants Nodule Roots Unclassified root nodules 34.06 -118.44 441538224 401848 22 28 19 46 SRX6453236 Unrestricted 99.43 Metagenome 3300031655 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #282 DOE Joint Genome Institute (JGI) 3300031655 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5596 77.8957 658690717 1375114 285 98 357 185 SRX5650149 Unrestricted 0.0 Metagenome 3300070414 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lajas Experimental Station, Puerto Rico, USA - LAJA_001-M-20171128-COMP-DNA1 3300070414 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 53410 174 4 2 0 0 0.0 Metagenome 3300005589 *Microbiome Permanent Draft Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd47.2 DOE Joint Genome Institute (JGI) 3300005589 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jeremy.rich@maine.edu Jeremy Rich No Environmental Aquatic Coastal Marine Sediment Marine sediment 1928875857 4695767 1671 45 2756 105 SRX2837962 Unrestricted 0.0 Metagenome 3300020522 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 26JUN2008 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020522 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.099444 -89.404444 106178408 214876 67 14 99 25 SRX3310918 Unrestricted 0.0 Metagenome 3300043180 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from California, United States - Upper Travertine Spring (UTS_S3) (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043180 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Warm (34-42C) Thermal springs Unclassified Desert spring 36.4428 -116.8278 7.4 769865976 1155757 326 5 514 9 SRX9167740 Unrestricted 33.01 Metagenome 3300061649 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0009 Microbiome Insights 3300061649 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 384994281 550653 114 1 178 4 0.0 Metagenome 3300053739 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 endosphere DOE Joint Genome Institute (JGI) 3300053739 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.588248 -123.19409 210803294 453542 221 66 425 107 Unrestricted 10.49 Metagenome 3300002348 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 12JUL2011 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002348 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 31834533 76613 74 2 129 2 SRX1989657 Unrestricted 0.0 Metagenome 7000000386 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765135172 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000386 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 89753140 151030 0 0 0 0 0.0 Metagenome 3300031989 *Microbiome Permanent Draft Microbial communities from the deep biosphere Tropical shrubland soil microbial communities from Costa Cuenca Murcielago, Costa Rica - SE_Spring9 re-assembly Marine Biological Laboratory 3300031989 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Unclassified Soil Unclassified tropical shrubland soil 10.895439 -85.729417 106888056 225928 113 28 184 63 0.0 Metagenome 3300013538 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Human oral microbial communities from various locations - University of British Columbia - SCG41 University of British Columbia 3300013538 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Unclassified Human oral 220815 616 0 0 1 0 SRX143150 0.0 Metagenome 3300044834 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_34BD DOE Joint Genome Institute (JGI) 3300044834 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4367 -106.0519 1292767772 2074647 433 31 726 55 SRX20649824 Unrestricted 16.07 Metagenome 3300045545 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-462 Genome Quebec 3300045545 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.236235 -122.97178 961286147 2097055 449 115 794 171 0.0 Metagenome 3300057033 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M1L_0_1 DOE Joint Genome Institute (JGI) 3300057033 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0036317 -81.5659748 1057215572 1800918 517 17 941 20 Unrestricted 12.65 Metagenome 3300028031 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in the Atlantic and Pacific Ocean Hydrothermal vent microbial communities from East Pacific Rise, Pacific Ocean - Teddybear DOE Joint Genome Institute (JGI) 3300028031 Metagenome Analysis spades v. 3.11.1 Yes Yes pgirguis@oeb.harvard.edu Peter Girguis No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent 9.8472 -104.2975 604341212 1269686 520 28 860 57 SRX5246860 Unrestricted 11.21 Metagenome 3300013145 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100744 University of Pennsylvania 3300013145 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 13953150 27075 18 7 35 11 SRX756106 0.0 Metagenome 3300009822 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S1_30_40 DOE Joint Genome Institute (JGI) 3300009822 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37229149 -119.2718121 219028217 471130 164 2 314 1 SRX2523174 Unrestricted 0.0 Metagenome 3300026455 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepC_8h DOE Joint Genome Institute (JGI) 3300026455 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 161640128 364409 211 12 303 30 SRX4547329 Unrestricted 11.93 Metagenome 3300017901 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Organic Lake, Antarctica - Site 233 with 3.0UM filter J. Craig Venter Institute 3300017901 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 43859466 87591 47 7 67 18 0.0 Metagenome 3300061107 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIIF5SW no PMA treatment Jet Propulsion Laboratory, California Institute of Technology 3300061107 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 29.5517 -95.0985 4943842 5135 6 1 7 6 SRX3808510, SRX3244862, SRX3808507, SRX3244869 0.0 Metagenome 3300009118 *Microbiome Permanent Draft Freshwater sediment microbial communities Lake sediment microbial communities from Pelican Lake, MN University of Minnesota - Twin Cities 3300009118 Metagenome Analysis IDBA released per JGI data release policy No Yes mill3731@umn.edu Hanna Temme No Environmental Aquatic Lake Freshwater Sediment lake sediment 46.612069 -94.156828 39711029 97743 187 3 355 9 0.0 Metagenome 3300017697 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017697 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 37.1043 -76.1811 776158716 1745321 327 30 637 56 SRX3048257, SRX3048258 Unrestricted 12.74 Metagenome 3300008715 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763577454 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008715 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 169905998 234436 112 0 165 1 0.0 Metagenome 3300006922 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG DOE Joint Genome Institute (JGI) 3300006922 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.205 -77.515 258947170 581795 23 0 29 0 SRX2926779 Unrestricted 0.0 Metagenome 3300057214 *Microbiome Permanent Draft Sediment microbial communities from coastal wetlands in Copper River Delta, Alaska, USA Sediment microbial communities from freshwater pond in Copper River Delta, Alaska, USA - High-clay-rep1 DOE Joint Genome Institute (JGI) 3300057214 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rcolwell@coas.oregonstate.edu Frederick Colwell No Environmental Aquatic Pond Freshwater Sediment Sediment 60.52 -145.601 4928835 9477 18 5 45 8 Unrestricted 3877.24 Metagenome 3300003421 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from above oceans and continental USA - SEAC4RS-RF10-011 DOE Joint Genome Institute (JGI) 3300003421 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 1979669 6397 31 4 15 8 Unrestricted 0.0 Metagenome 3300006202 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 763759525 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300006202 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 493939 1491 2 0 12 0 SRX024016 0.0 Metagenome 3300025996 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_301 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025996 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 55146189 141660 114 4 210 3 SRX2564777, SRX2581044 Unrestricted 0.0 Metagenome 3300007864 *Microbiome Permanent Draft Microbial communities from Columbia River Estuary, Oregon, USA Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461B_3.0um Oregon State University 3300007864 Metagenome Analysis megahit released per JGI data release policy Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Coastal Marine Unclassified estuary water 46.235 -123.9123 294946458 644760 462 237 849 376 0.0 Metagenome 3300005435 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG DOE Joint Genome Institute (JGI) 3300005435 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Agricultural soil 42.4774 -85.451 5267213981 13703664 3453 326 5668 614 SRX2745056 Unrestricted 0.0 Metagenome 3300009165 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 DOE Joint Genome Institute (JGI) 3300009165 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wilkins.231@osu.edu, mike.wilkins@colostate.edu Michael Wilkins No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0956 -99.1001 1195812835 2567332 1067 42 1973 72 SRX2753783 Unrestricted 0.0 Metagenome 3300003112 *Microbiome Permanent Draft Continuous culture Bioreactor microbial community inoculated with marine intertidal flat from German Wadden Sea Continuous culture bioreactor microbial community inoculated with marine intertidal flat from Wadden Sea, Germany - Culture-1_ArsB 3300003112 Metagenome Analysis Newbler v. 2.6 Made public because these are downloaded from Genbank No Yes nckyrpides@lbl.gov Geelhoed,J.S., Nikos Kyrpides No Engineered Bioreactor Effluent Anaerobic Unclassified Continuous culture Bioreactor 53.1163 8.8467 18153718 18419 6 0 11 0 0.0 Metagenome 3300012362 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG DOE Joint Genome Institute (JGI) 3300012362 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 2926462798 5969022 1507 41 2832 85 SRX3372644 Unrestricted 0.0 Metagenome 3300049147 *Microbiome Permanent Draft Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama - S038_CH15_fluctuating_T2 DOE Joint Genome Institute (JGI) 3300049147 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes njbouskill@lbl.gov Nicholas Bouskill No Environmental Terrestrial Tropical forest Soil Bulk soil Soil 9.17936 -79.8296 606638462 1667784 393 16 672 29 Unrestricted 7.13 Metagenome 3300000635 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 17SEP2007 hypolimnion DOE Joint Genome Institute (JGI) 3300000635 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300055380 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.19C.11 SIP fraction DOE Joint Genome Institute (JGI) 3300055380 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 243837665 452413 123 10 200 16 Unrestricted 12.76 Metagenome 3300001222 *Microbiome Permanent Draft Switchgrass rhizosphere microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere microbial communities from Knoxville, Tennessee, USA - 11_3 University of Tennessee 3300001222 Metagenome Analysis released per JGI data release policy No Yes jwang43@utk.edu Jun Wang No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 35.9606 -83.9208 2140311 7527 10 0 28 2 0.0 Metagenome 3300015364 *Microbiome Permanent Draft Danish lakes Microbial communities Depth profiles Lake Almind and Hund Sediment microbial communities from Lake Almind, Silkeborg, Region Midtjylland, Denmark - ALS_02.07.12_sediment_5-10cm metaSPAdes assemblies Odense University Hospital 3300015364 Metagenome Analysis metaSPAdes 3.7.1 released by JGI data releasing policy Yes Yes atreusch@biology.sdu.dk Alexander Treusch No Environmental Aquatic Lake Freshwater Sediment Sediment 56.148 9.546 22393385 94775 24 2 79 2 0.0 Metagenome 3300033566 *Microbiome Permanent Draft Columbia Riverbed POM Degredation Experiment Lab enriched sediment microbial communities from the Columbia River near Richland, WA, USA - CRF+POM O2 University of Wisconsin, Madison 3300033566 Metagenome Analysis Metaspades v. 3.13.0 released by JGI data releasing policy Yes Yes nstern2@wisc.edu Noah Stern No Environmental Aquatic Sediment Freshwater Unclassified Sediment 46.28045 -119.27368 1410674923 3137732 595 11 919 17 0.0 Metagenome 3300034113 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Sediment microbial communities from East River floodplain, Colorado, United States - 7_s17 DOE Joint Genome Institute (JGI) 3300034113 Metagenome Analysis metaspades v. 3.13.0 Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Aquatic Sediment Floodplain Unclassified sediment 38.9229 -106.9499 375116069 1052146 458 14 806 22 SRX7631459 Unrestricted 6.21 Metagenome 3300039914 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_035-M-20160803-COMP-DNA1 Battelle Memorial Institute 3300039914 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 22160348 60705 44 6 91 9 0.0 Metagenome 3300014232 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 242_L1_2014-8-15 San Diego State University 3300014232 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 521972 1895 21 8 47 21 0.0 Metagenome 3300028143 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_18SEP2017_LD1 DOE Joint Genome Institute (JGI) 3300028143 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 70179126 141987 55 73 74 89 SRX5345915 Unrestricted 18.46 Metagenome 3300002749 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-B DOE Joint Genome Institute (JGI) 3300002749 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.33 85158 269 13 6 26 7 SRX1991379 Unrestricted 0.0 Metagenome 3300013417 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100168 University of Pennsylvania 3300013417 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 1156349 3600 7 1 11 0 SRX756364 0.0 Metagenome 3300053673 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Biomass microbial communities from acid-phase anaerobic digester in WWTP, Madison, WI, USA - 20201123_SampleB DOE Joint Genome Institute (JGI) 3300053673 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Sludge Anaerobic digester Unclassified Biomass 43.03331 -89.35633 452142209 821477 313 10 473 8 Unrestricted 67.22 Metagenome 3300035502 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver proximal colon microbial communities from Maple Ridge, British Columbia, Canada - Beaver2Prox.Colon1 DOE Joint Genome Institute (JGI) 3300035502 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Proximal colon proximal colon 49.18 -122.54 788315619 1511214 1213 36 1776 40 SRX8345782 Unrestricted 12.15 Metagenome 3300042785 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_11_19 NMDC pilot DOE Joint Genome Institute (JGI) 3300042785 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 7930742 11321 6 0 15 0 SRX2924863 0.0 Metagenome 3300001902 *Microbiome Permanent Draft Marine benthic microbial communities from British Columbia, Canada Benthic Microbial Communities 3300001902 Metagenome Analysis IDBA released by JGI data releasing policy No Yes trinitylh@gmail.com Trinity Hamilton No Environmental Aquatic Oceanic Marine Benthic Marine benthic 49.283333 -119.583333 7 2703802 3016 0 0 0 0 0.0 Metagenome 3300070730 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Mountain Lake Biological Station, Virginia, USA - MLBS_064-O-20180612-COMP-DNA1 3300070730 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 22440540 68260 50 4 114 6 0.0 Metagenome 3300008940 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Final time point T34 (2) (live) benzoate enrichments of Methanogenic microbial communities using Athabasca oil sands as inoculum DE NOVO (2) Shell Corporation 3300008940 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 68049203 200560 64 0 125 2 0.0 Metagenome 3300027558 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Cubitermes ugandensis crop segment gut microbial communities from Kakamega Forest, Kenya - Cu122C (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027558 Metagenome Analysis spades v. 3.11.1 Yes Yes brune@mpi-marburg.mpg.de Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 0.2917 34.856 543327907 737255 7 12 20 12 SRX2553488 Unrestricted 0.0 Metagenome 3300038455 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Sediment microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_East_2 DOE Joint Genome Institute (JGI) 3300038455 Metagenome Analysis metaspades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Wetlands Marine Sediment sediment 26.502 -80.2225 1891371648 2898715 678 10 1158 20 SRX9406365 Unrestricted 13.34 Metagenome 3300032007 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_04 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300032007 Metagenome Analysis spades v. 3.12.0 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen 49.6935 -112.8418 2425178179 3928054 2169 50 2799 77 SRX5786935, SRX5786934 Unrestricted 0.0 Metagenome 3300027319 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage3 60B (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027319 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8406114 -122.2923487 60224795 70564 62 0 53 0 SRX3194971 Unrestricted 0.0 Metagenome 7000000310 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763961826 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000310 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 12152501 27799 0 0 0 0 0.0 Metagenome 3300008060 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159227541 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008060 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 96209904 114206 112 0 121 0 0.0 Metagenome 3300006328 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763860675 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006328 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 98158150 137280 66 0 92 0 0.0 Metagenome 3300043116 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B6.6_Sample6.Rodeo6.Well1132 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043116 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 190900843 351079 239 0 377 0 SRX8356258 Unrestricted 78.08 Metagenome 3300047443 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere DOE Joint Genome Institute (JGI) 3300047443 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.588 -123.1931 463761112 644579 95 17 124 21 Unrestricted 28.41 Metagenome 3300044563 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TSR13 DOE Joint Genome Institute (JGI) 3300044563 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.414 54415080 69070 62 1 64 2 SRX12686849 Unrestricted 216.03 Metagenome 3300039137 *Microbiome Permanent Draft Sediment and seawater microbial communities from hydrothermal vent in Taiwan, China Sediment microbial communities from hydrothermal vent in Taiwan, China - YPS Xiamen university 3300039137 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Coastal Marine Unclassified Sediment 24.83499 121.96208 5633066 13001 12 0 17 0 0.0 Metagenome 3300031782 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20 DOE Joint Genome Institute (JGI) 3300031782 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1472589057 3600509 392 8 640 10 SRX5820236 Unrestricted 13.7 Metagenome 3300001308 *Microbiome Permanent Draft Bioengineered switchgrass rhizosphere microbial community from Knoxville, Tennessee, USA Bioengineered switchgrass rhizosphere microbial community from Knoxville, Tennessee, USA - 26-3 3300001308 Metagenome Analysis released by JGI data releasing policy No Yes jliu36@utk.edu Jiang Liu No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 35.98 -83.92 120996 420 4 1 8 2 0.0 Metagenome 3300035489 *Microbiome Permanent Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - WEM-1_at_0-1_cm Genome Quebec 3300035489 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89896 -73.80984 560502514 1454811 573 38 1244 82 0.0 Metagenome 3300069317 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_016-M-20170829-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069317 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 13791373 42118 29 5 79 9 0.0 Metagenome 3300012915 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2 DOE Joint Genome Institute (JGI) 3300012915 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 914214540 2293018 880 32 1706 62 SRX3298488 Unrestricted 4.57 Metagenome 3300012048 *Microbiome Permanent Draft Norwegian Young Sea Ice 2015 - N-ICE15 Seawater microbial communities from Norwegian Young Sea Ice, Arctic Ocean, Norway, 2015 - N-ICE15, floe 3, site 2, 50m LGC Genomics 3300012048 Metagenome Analysis Ray v 2.3.1 released by JGI data releasing policy No Yes antonioggsousa@gmail.com; cmagalhaes@ciimar.up.pt Antonio Sousa; Catarina Magalh?es No Environmental Aquatic Epipelagic Marine Unclassified marine 82.383388 15.150055 478794 2471 11 1 14 5 0.0 Metagenome 3300045950 *Microbiome Permanent Draft Groundwater microbial communities from wells in Ash Sharqiyah North Governorate, Oman Groundwater microbial communities from well in Ash Sharqiyah North Governorate, Oman - OM20_WAB188_50 DOE Joint Genome Institute (JGI) 3300045950 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rachel.spietz@montana.edu Rachel Spietz No Environmental Aquatic Groundwater Freshwater Unclassified groundwater 22.8672 58.668 1335816619 1897408 740 15 1163 27 Unrestricted 41.61 Metagenome 3300037238 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 711 S-3-M DOE Joint Genome Institute (JGI) 3300037238 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0474 546729668 952004 181 8 284 8 SRX8146362 Unrestricted 14.03 Metagenome 3300025810 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025810 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 327675626 774192 233 96 338 153 SRX2751898 Unrestricted 0.0 Metagenome 3300000602 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 13JUN2008 hypolimnion DOE Joint Genome Institute (JGI) 3300000602 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300028289 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Site 231 with 0.8UM filter - spades J. Craig Venter Institute 3300028289 Metagenome Analysis Spades v. 3.11.1 Released per Simon Roux. Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater -68.4 78.18278 8.81 16906227 32486 11 1 18 2 0.0 Metagenome 3300023177 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Lake Matano, South Sulawesi, Indonesia - Watercolumn_Matano_2014_112_MG DOE Joint Genome Institute (JGI) 3300023177 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 965473321 2182929 899 18 1487 45 SRX4481787 Unrestricted 22.16 Metagenome 3300042652 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Incisitermes marginipennis from BAM Federal Institute for Materials Research and Testing, Berlin, Germany - Im510 Eurofins MWG Operon 3300042652 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 52.443245 13.287523 1412124320 1384038 144 39 154 51 0.0 Metagenome 3300014925 *Microbiome Permanent Draft Human fecal microbial community of Hadza hunter-gatherer and regular subjects from Tanzania and Italy Human fecal microbial community of Hadza hunter-gatherer populations from Tanzania - 10008 University of Bologna 3300014925 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal -3.6347588 35.0828588 37927762 81489 51 3 88 5 0.0 Metagenome 3300014490 *Microbiome Permanent Draft Permafrost microbial communities from Stordalen Mire, Sweden Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG DOE Joint Genome Institute (JGI) 3300014490 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rich.270@osu.edu Virginia Rich Yes 30013118 Environmental Terrestrial Wetlands Soil Permafrost Fen 68.35 19.05 1334086771 2837926 984 15 1796 30 SRX3580370 Unrestricted 5.49 Metagenome 3300027718 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027718 Metagenome Analysis spades v. 3.11.1 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.0936 -100.2988 592853518 1278315 624 72 999 103 SRX2124704 Unrestricted 0.0 Metagenome 3300055067 *Microbiome Permanent Draft Soil biocrust microbial and viral communities from model ecosystem in Berkeley Lab, California, USA Soil biocrust microbial communities from model ecosystem in Berkeley Lab, California, USA - 9hr_B DOE Joint Genome Institute (JGI) 3300055067 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sroux@lbl.gov Simon Roux No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil biocrust 37.87739 -122.250939 2020397721 3306855 810 16 1161 31 Restricted 33.65 Metagenome 3300035148 *Microbiome Permanent Draft Sediment microbiome project Sediment microbial communities from wetland pond in Xixi Nat. Park in Hangzhou, Zhejiang, China - 11 Beijing Genomics Institute (BGI) 3300035148 Metagenome Analysis megahit v. 1.1.3 released by JGI data releasing policy No Yes 17826834892@163.com wang binhao No Environmental Aquatic Pond Freshwater Sediment sediment 30.268 120.04 1149324301 1524602 286 9 370 10 0.0 Metagenome 3300049826 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Oregon, USA - littlewolfcreek_2019_sed_WHONDRS-S19S_0078 DOE Joint Genome Institute (JGI) 3300049826 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 43.43138889 -123.5855556 434959149 1014961 689 21 1406 41 Unrestricted 11.68 Metagenome 3300033521 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B DOE Joint Genome Institute (JGI) 3300033521 Metagenome Analysis spades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified soil 41.3776 -82.5117 9031577352 22117229 4288 96 8111 192 SRX6871195 Unrestricted 6.86 Metagenome 3300028814 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183 DOE Joint Genome Institute (JGI) 3300028814 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92029772 -106.94875926 1349937512 3281880 506 8 954 23 SRX5354724 Unrestricted 12.21 Metagenome 3300035535 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B2.10_Sample2.Rodeo10.Well1209 DOE Joint Genome Institute (JGI) 3300035535 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 305892164 516690 270 0 409 0 SRX8350982 Unrestricted 32.52 Metagenome 3300017823 *Microbiome Permanent Draft Coastal wetland sediment microbial communities from the Mid-Atlantic and Southeast Atlantic Coast of USA, responding to salinity intrusion. Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3 DOE Joint Genome Institute (JGI) 3300017823 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Freshwater sediment 35.9061 -76.1569 873711254 1819691 475 1 860 4 SRX4367491 Unrestricted 5.47 Metagenome 3300014205 *Microbiome Permanent Draft Leachate and groundwater microbial communities from a municipal landfill and adjacent aquifer in Southern Ontario, Canada Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 162 metaG DOE Joint Genome Institute (JGI) 3300014205 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes laura.hug@uwaterloo.ca Laura Hug No Engineered Solid waste Unclassified Landfill Unclassified landfill leachate 43.442 -80.577 2274189263 4713313 2305 17 3858 42 SRX3574180 Unrestricted 9.41 Metagenome 3300001935 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Northern Gulf of Maine, Canada - GS007 J. Craig Venter Institute (JCVI) 3300001935 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine 43.63222 -66.84722 32214377 54370 27 1 58 0 0.0 Metagenome 3300027765 *Microbiome Permanent Draft Agricultural soil microbial communities from Utah and Georgia to study Nitrogen management Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027765 Metagenome Analysis spades v. 3.11.1 Yes Yes jeanette.norton@usu.edu Jeanette Norton No Environmental Terrestrial Agricultural land Soil Unclassified Agricultural soil 33.8834 -83.4195 742549630 1623369 705 55 1228 79 SRX2924180 Unrestricted 0.0 Metagenome 3300021496 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-1-2_MG DOE Joint Genome Institute (JGI) 3300021496 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.0114 -110.5956 136289761 306073 232 4 386 12 SRX3982297 Unrestricted 14.5 Metagenome 3300037325 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Extra Lake-5 #417 DOE Joint Genome Institute (JGI) 3300037325 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4359 78.2849 549469421 1037894 195 59 297 130 SRX9173466 Unrestricted 19.69 Metagenome 3300049263 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB34 DOE Joint Genome Institute (JGI) 3300049263 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 155092486 397930 466 17 995 14 Unrestricted 15.31 Metagenome 3300025255 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0441 (SPAdes) DOE Joint Genome Institute (JGI) 3300025255 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -22.97 -36.95 109733207 221313 151 1 213 0 SRX1983027 Unrestricted 0.0 Metagenome 3300005064 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 01 soap2 Center for Advanced Technologies in Genomics, Sao Paulo University 3300005064 Metagenome Analysis SoapDeNovo 2 released per PI's request No Yes joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 243710731 650130 10 1 57 13 0.0 Metagenome 3300007533 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_D_shore_MG DOE Joint Genome Institute (JGI) 3300007533 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4958 -122.1331 487470213 855036 388 5 720 5 SRX2523669 Unrestricted 0.0 Metagenome 3300011700 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00548 Weill Cornell Medical College 3300011700 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.9 25930450 45984 10 0 11 0 SRX822515 0.0 Metagenome 3300005323 *Microbiome Permanent Draft Bioremediated contaminated groundwater microbial communities from North Railroad Avenue plume (NRAP), New Mexico Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-23 DOE Joint Genome Institute (JGI) 3300005323 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, NNIvanova@lbl.gov; rebecca.reiss@nmt.edu Natasha Ivanova, Natalia Ivanova; Rebecca Reiss Yes 27980706 Environmental Aquatic Groundwater Deep subsurface Contaminated Bioremediated contaminated groundwater 35.992 -106.0797 213718083 316388 273 2 373 2 SRX2554386 0.0 Metagenome 3300002062 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface microbial communities from Vigo, Galicia, Spain - SA2-P2 J. Craig Venter Institute (JCVI) 3300002062 Metagenome Analysis Released per Alexandra J. Roth Schulze (April 1, 2016) No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface 42.52 -8.82 257199987 836746 36 14 125 24 0.0 Metagenome 3300003466 *Microbiome Permanent Draft Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil, in a copper mine Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P3 sample University of Campinas 3300003466 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes danba.castro@gmail.com Daniel Castro No Environmental Terrestrial Unclassified Soil Unclassified Ore pile and mine drainage contaminated soil -6.426389 -50.051389 263654823 391485 127 0 199 1 0.0 Metagenome 3300005402 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV73 DOE Joint Genome Institute (JGI) 3300005402 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 741707990 2027451 817 13 1354 20 SRX2782346 Unrestricted 0.0 Metagenome 3300005944 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048 DOE Joint Genome Institute (JGI) 3300005944 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Soil 68.6137 -149.3144 569627929 1775876 370 35 656 74 SRX2739151 Unrestricted 0.0 Metagenome 3300041037 *Microbiome Permanent Draft Soil microbial communities from Antarctica Soil microbial communities from Worm Herder Creek, Bonney Basin, McMurdo Dry Valleys, Antarctica - WT517 Novogene 3300041037 Metagenome Analysis MEGAHIT v. 1.2.9 released by JGI data releasing policy No Yes kfeeser@lanl.gov Kelli Feeser No Environmental Terrestrial Unclassified Soil Unclassified soil -77.725 162.3 8.89 689108996 1404980 476 0 678 3 0.0 Metagenome 3300043507 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-379 Genome Quebec 3300043507 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 54.483 -112.754406 1204776641 2843652 610 114 972 264 0.0 Metagenome 3300001709 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-29 DOE Joint Genome Institute (JGI) 3300001709 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 48.9698 -130.6666 40318590 55311 7 1 2 2 Unrestricted 0.0 Metagenome 3300055089 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_84-s20 day 245 DOE Joint Genome Institute (JGI) 3300055089 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1687542876 2427671 365 191 471 222 Unrestricted 33.79 Metagenome 3300002404 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 22APR2009 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002404 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 48399382 119223 158 74 248 127 SRX1987722 Unrestricted 0.0 Metagenome 3300031544 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26 DOE Joint Genome Institute (JGI) 3300031544 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1676545553 3939779 441 13 799 19 SRX5665741 Unrestricted 12.0 Metagenome 3300040454 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Desert Southwest, AZ, USA - SRER_004-M-20170815-COMP-DNA1 Battelle Memorial Institute 3300040454 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.91068 -110.83549 3584360 10836 22 3 45 4 0.0 Metagenome 3300025895 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - COGITO 998_met_12 (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025895 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling No Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Pelagic marine 53.9944 6.8905 1472824724 2912685 560 46 915 74 SRX2582855 Unrestricted 0.0 Metagenome 3300005379 *Microbiome Permanent Draft Marine microbial communities from Deepwater Horizon subsurface plume in Gulf of Mexico Marine microbial communities from Deepwater Horizon subsurface plume in Gulf of Mexico, 16-4 Below Plume DOE Joint Genome Institute (JGI) 3300005379 Metagenome Analysis Rnnotater No Yes rivers@uga.edu Adam R. Rivers, Adam Rivers Yes 23902988 Environmental Aquatic Hydrothermal vents Marine Black smokers Subsurface plume 28.716667 -88.466667 52440998 112790 5 12 70 45 0.0 Metagenome 3300046671 *Microbiome Permanent Draft Soil microbial communities from Blodgett Forest Research Station, California, USA Soil microbial communities from Blodgett Forest Research Station, California, USA - BWE201506022H1020 DOE Joint Genome Institute (JGI) 3300046671 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.9122 -120.6612 127252291 230648 209 52 418 92 Unrestricted 19.25 Metagenome 3300015245 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly) DOE Joint Genome Institute (JGI) 3300015245 Metagenome Analysis SPAdes v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 3903809475 9758165 899 56 1821 120 SRX3048967, SRX3048968, SRX3048969, SRX3048961, SRX3048962, SRX3048963, SRX3048964, SRX3048965, SRX3048966 Unrestricted 0.0 Metagenome 7000000576 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158499257 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000576 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 113421052 197403 0 0 0 0 0.0 Metagenome 3300009311 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 900m, 2.7-0.2um, replicate b Georgia Genomics Facility 3300009311 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 405757630 499176 236 3 327 2 0.0 Metagenome 3300013683 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00950 Weill Cornell Medical College 3300013683 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.69 -73.91 12784158 24060 12 0 11 0 SRX822912 0.0 Metagenome 3300000081 *Microbiome Permanent Draft Fermented beverages microbial communities from Yunnan, China Fermented beverages microbial communities from Yunan, China, sample 1 Chinese National Human Genome Center at Shanghai 3300000081 Metagenome Analysis released per JGI data release policy No Yes abcd1000efgh2000@163.com LV yong No Engineered Food production Unclassified Fermented beverages Unclassified Fermented beverages 25.1243066 97.3575 0 0 0 0 0 0 0.0 Metagenome 3300015370 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - OS_PC_MetaG DOE Joint Genome Institute (JGI) 3300015370 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 57.4344 16.66 990050102 1830502 748 4 1226 12 SRX3602720 Unrestricted 51.56 Metagenome 3300034108 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Jun2014-rr0157 DOE Joint Genome Institute (JGI) 3300034108 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1011832242 1937828 428 65 631 104 SRX7622335 Unrestricted 14.1 Metagenome 3300045280 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_1_A DOE Joint Genome Institute (JGI) 3300045280 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 145103739 178061 76 2 94 3 Unrestricted 101.7 Metagenome 3300012425 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100329 University of Pennsylvania 3300012425 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 6737601 10745 14 3 21 4 SRX756328 0.0 Metagenome 3300012990 *Microbiome Permanent Draft Wastewater microbial communities from Base Mine Lake, Ft. McMurray, Alberta, Canada - Surface, May 2015 Tailings pond microbial communities from Northern Alberta -TP6_2010 BML May 2015 McGill University 3300012990 Metagenome Analysis 4.SPAdes-3.8.0-Linux No Yes scaffrey@genomealberta.ca; pfdunfie@ucalgary.ca Sean Caffrey; Peter Dunfield No Engineered Built environment Petrochemical Tailings pond Unclassified Hydrocarbon resource environments 57.02 -111.55 200511722 325827 241 11 304 9 0.0 Metagenome 3300065526 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 800 in Cowley, Alberta, Canada - S00JY_0278 Microbiome Insights 3300065526 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.2618822 -113.3619356 9858706 15745 17 0 41 0 0.0 Metagenome 3300020337 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_E500000075 (ERX289009-ERR315861) CEA Genoscope 3300020337 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 42.1874 17.7189 300599655 729227 231 8 431 16 0.0 Metagenome 3300011561 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway plastic -P00377 Weill Cornell Medical College 3300011561 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Plastic surface city subway plastic 40.76 -73.92 21472606 35236 16 0 22 0 SRX822348 0.0 Metagenome 3300007562 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1561A-02 DOE Joint Genome Institute (JGI) 3300007562 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2637 -123.4651 429592047 838391 380 34 608 64 SRX2753756 Unrestricted 0.0 Metagenome 3300049232 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB7 DOE Joint Genome Institute (JGI) 3300049232 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 165323556 410746 471 16 904 27 Unrestricted 16.7 Metagenome 3300002033 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from the Sargasso Sea - GS000a &b J. Craig Venter Institute (JCVI) 3300002033 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Oceanic Marine Unclassified Marine 31.175 -64.32433 1080847652 1295471 1103 22 2078 61 0.0 Metagenome 3300037116 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPON2-1-X0 DOE Joint Genome Institute (JGI) 3300037116 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3578 19.0528 848275722 1618451 281 3 481 10 SRX8167678 Unrestricted 10.52 Metagenome 3300033443 *Microbiome Permanent Draft Meromitic Lake A Freshwater microbial communities from meromitic lake A, Ellesmere Island, Canada - Sample 22m re-analysis2 Laval University 3300033443 Metagenome Analysis Megahit v. 1.0.5 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 82.99445 -75.443367 651962811 1202234 563 3 654 12 0.0 Metagenome 3300007870 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 764062976 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007870 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2125170 2327 0 0 1 0 0.0 Metagenome 3300011234 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00206 Weill Cornell Medical College 3300011234 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.98 48002332 74295 17 0 21 0 SRX822185 0.0 Metagenome 7000000395 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764083206 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000395 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 90708913 177345 0 0 0 0 0.0 Metagenome 3300008098 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764224817 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008098 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 161393669 220724 131 0 167 0 0.0 Metagenome 3300004224 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 85_LOW11 DOE Joint Genome Institute (JGI) 3300004224 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 77065664 165371 33 3 87 7 SRX2721149 Unrestricted 0.0 Metagenome 3300014861 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT27_16_10D DOE Joint Genome Institute (JGI) 3300014861 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9225 -106.9514 152249971 361491 264 22 526 36 SRX3780228 Unrestricted 4.58 Metagenome 3300014147 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Washington, USA - P5_4mM MetaG DOE Joint Genome Institute (JGI) 3300014147 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 90288736 100806 8 11 6 22 SRX3780031 Unrestricted 147.16 Metagenome 2065487007 *Microbiome Permanent Draft Human fecal microbial communities from Baylor College of Medicine, Texas, USA, mock community Human fecal microbial communities from Baylor College of Medicine, Texas, USA, mock community - Mock Even Illumina SOAP 2010 Baylor College of Medicine 2065487007 Metagenome Analysis released per JGI data release policy No Yes xqin@bcm.tmc.edu Xiang Qin No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 29.7 -95.38 59922431 99425 51 0 112 0 0.0 Metagenome 3300047314 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 soil DOE Joint Genome Institute (JGI) 3300047314 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.120971 -123.270935 5.13 1307183482 2055674 354 25 561 28 Unrestricted 13.11 Metagenome 3300053131 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere DOE Joint Genome Institute (JGI) 3300053131 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.587894 -123.192683 653127571 1117716 263 105 426 161 Unrestricted 0.0 Metagenome 3300009103 *Microbiome Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um Georgia Genomics Facility 3300009103 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 739064644 941544 339 264 424 291 0.0 Metagenome 3300037507 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Sep2014-rr0078 DOE Joint Genome Institute (JGI) 3300037507 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1298149343 1992106 467 129 644 201 SRX9139768 Unrestricted 18.63 Metagenome 3300051361 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D15_RHK2_2_to_SEK_2 DOE Joint Genome Institute (JGI) 3300051361 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.245 682304999 1103798 383 119 617 175 Unrestricted 13.72 Metagenome 3300009524 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG DOE Joint Genome Institute (JGI) 3300009524 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes loy@microbial-ecology.net; Michael.Pester@dsmz.de Alexander Loy; Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.1318 11.881 817968998 1469078 252 1 374 4 Unrestricted 0.0 Metagenome 3300022058 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 49 SPOT_SRF_2013-12-23 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022058 Metagenome Analysis spades v. 3.11.1-check Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 9828409 32099 16 4 22 9 SRX5471779, SRX5471778, SRX5471780 Unrestricted 0.0 Metagenome 3300012880 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - HID1975I_E0 MG DOE Joint Genome Institute (JGI) 3300012880 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 207407919 337693 229 0 289 0 SRX3564470 Unrestricted 0.0 Metagenome 3300042845 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158 NMDC pilot DOE Joint Genome Institute (JGI) 3300042845 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92057636 -106.94874802 761545212 1923492 550 19 1027 29 SRX5354713 0.0 Metagenome 3300020459 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_X000000368 (ERX555913-ERR599095) CEA Genoscope 3300020459 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 35.5571 -6.5586 1398752582 3498841 587 16 1035 41 0.0 Metagenome 3300000197 *Microbiome Permanent Draft Delisea pulchra's surface microbial communities from Botany Bay, Sydney, Australia Delisea pulchra's surface microbial communities from Botany Bay, Sydney, Australia - BBAY57_SOAP_k21_Abyss_k53_GAA J. Craig Venter Institute 3300000197 Metagenome Analysis Assembled with SOAPdenovo and Abyss separately and then joined with GAA released per JGI data release policy No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Unclassified Red algae Unclassified Delisea pulchra's surface -33.991017 151.232433 413084072 1553063 0 0 0 0 0.0 Metagenome 3300014609 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01303 Weill Cornell Medical College 3300014609 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.86 -73.84 30348074 42036 15 0 32 0 SRX823243 0.0 Metagenome 3300025985 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025985 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.000637 -121.624207 162370090 382341 222 1 403 2 SRX7144828 Unrestricted 0.0 Metagenome 3300005778 *Microbiome Permanent Draft Human lung microbial communities from healthy (non-smokers and smokers) and HIV infected subjects Human lung microbial communities from Normal Control Background 110502-1 New York University Langone Medical Center 3300005778 Metagenome Analysis Shotgun released per JGI data release policy No Yes leopoldo.segal@nyumc.org Leopoldo N Segal No Host-associated Mammals: Human Lung Respiratory system Unclassified Lung Microbiome 40.7127 -74.0059 19289477 56864 0 3 3 1 0.0 Metagenome 3300064915 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 727 in Wetaskiwin, Alberta, Canada - S00JY_0115 Microbiome Insights 3300064915 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.53069413 -113.1733318 172558043 254810 71 1 121 1 0.0 Metagenome 3300011013 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaG DOE Joint Genome Institute (JGI) 3300011013 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Volcanic Marine Unclassified Deep subsurface 36.5275 25.4914 1063749240 2440223 975 65 1616 94 SRX3203426 Unrestricted 0.0 Metagenome 3300026477 *Microbiome Permanent Draft Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 PR5 DOE Joint Genome Institute (JGI) 3300026477 Metagenome Analysis spades v. 3.11.1 Yes Yes ccraft@indiana.edu Chris Craft No Environmental Aquatic Wetlands Freshwater Sediment sediment 31.3377 -81.4644 193531997 491735 310 7 541 9 SRX4796521 Unrestricted 7.54 Metagenome 3300044532 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - AT3-8-2-19 DOE Joint Genome Institute (JGI) 3300044532 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.3025 -120.6238 246679726 726944 429 26 790 35 Restricted 6.0 Metagenome 3300002889 *Microbiome Permanent Draft Halophilic microbial communities from diverse ecological areas that have bioremediating capacity Dehalobacter sp. E1 + Unknown organism coculture 3300002889 Metagenome Analysis released by JGI data releasing policy No Yes hauke.smidt@wur.nl Hauke Smidt No Engineered Lab enrichment Unclassified Unclassified Unclassified Halophilic 7524332 7624 2 0 4 0 0.0 Metagenome 3300025659 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_200m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025659 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 477099450 822728 338 2 508 1 Unrestricted 0.0 Metagenome 3300017548 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Organic Plus compost microbial communities from Emeryville, California, USA - eDNA 3rd pass 30_C Kraft OP (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017548 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes JMGladden@lbl.gov John Gladden No Engineered Solid waste Composting Mixed feedstock Commercial compost compost 37.83 -122.29 589984846 998891 700 23 970 23 SRX3901850, SRX3901851 Unrestricted 0.0 Metagenome 3300048819 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 S1 1-5 DOE Joint Genome Institute (JGI) 3300048819 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3532 19.0474 537671523 882283 182 29 306 36 Restricted 12.18 Metagenome 3300029456 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001874-21 Beijing Genomics Institute (BGI) 3300029456 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 91060580 113745 81 0 110 0 0.0 Metagenome 3300060374 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210616_20_13 DOE Joint Genome Institute (JGI) 3300060374 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 448338034 638363 227 89 283 136 Unrestricted 44.21 Metagenome 3300002141 *Microbiome Permanent Draft Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds M3t6BS1 (103f) 3300002141 Metagenome Analysis released by JGI data releasing policy No Yes daniel.herlemann@io-warnemuende.de, daniel.herlemann@emu.ee Daniel Herlemann, Daniel P. Herlemann No Environmental Aquatic Unclassified Unclassified Unclassified Marine 65.3915 23.49916667 240425004 1149062 286 33 588 47 0.0 Metagenome 3300043325 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-351 Genome Quebec 3300043325 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 51.486701 -112.123435 1118506570 2449826 467 20 778 43 0.0 Metagenome 3300041832 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - C_33_wk_2 DOE Joint Genome Institute (JGI) 3300041832 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9702 -107.03 206496127 587321 228 13 422 26 SRX14808252 Unrestricted 7.2 Metagenome 3300050194 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_SEK2_1_to_RHK2 DOE Joint Genome Institute (JGI) 3300050194 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.153 -124.211 449014197 667855 139 76 227 117 Unrestricted 22.11 Metagenome 3300038800 *Microbiome Permanent Draft Metagenomes form methanogenic light crude oil-degrading microbial community Lab-enriched produced water microbial community from an oilfield near Medicine Hat, Alberta, Canada - CrudeOil mgh University of Calgary 3300038800 Metagenome Analysis megahit v. 1.1.3 released by JGI data releasing policy Yes Yes camillaln@gmail.com; courtney.toth@utoronto.ca Camilla Nesb?; Courtney Toth No Engineered Lab enrichment Anaerobic media Defined media Unclassified produced water 50.0333 -110.6667 93548691 121504 46 0 75 0 0.0 Metagenome 3300006639 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Fresh water mixed with fracking chemicals microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 DOE Joint Genome Institute (JGI) 3300006639 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Engineered Industrial production Input fracking water Chemical products Unclassified Fresh water mixed with fracking chemicals 40.178 -81.073 526351226 1304812 638 56 1033 118 SRX2925264 Unrestricted 0.0 Metagenome 3300028959 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 42_4M Beijing Genomics Institute (BGI) 3300028959 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 70499269 75625 40 0 58 0 ERX491140 0.0 Metagenome 3300015692 *Microbiome Permanent Draft Microbial communities associated with sugarcane Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 003.2_B08 Universidade Estadual de Campinas 3300015692 Metagenome Analysis SPADES released by JGI data releasing policy No Yes scs.rafael@gmail.com Rafael Souza No Host-associated Plants Unclassified Phyllosphere Unclassified Phylosphere -22.8187222 -47.05896667 17407958 19455 9 0 6 0 0.0 Metagenome 3300006166 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91 DOE Joint Genome Institute (JGI) 3300006166 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 2041951888 5508781 1926 51 3359 102 SRX2781862, SRX2781863 Unrestricted 0.0 Metagenome 3300042796 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S2_50_60 NMDC pilot DOE Joint Genome Institute (JGI) 3300042796 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228379 -119.2717467 87528185 232882 159 3 310 2 SRX2523281 0.0 Metagenome 3300022586 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 8 Selected contigs with viral hallmark genes Autonomous University of Barcelona 3300022586 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 1684016 2537 0 0 0 0 0.0 Metagenome 3300019834 *Microbiome Permanent Draft Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil - Pandora_C4 Center for Advanced Technologies in Genomics, Sao Paulo University 3300019834 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 26488136 52362 57 0 78 0 0.0 Metagenome 3300053043 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Activated sludge microbial communities from bioreactor in WWTP, Madison, WI, USA - RS_2019-10-23_SampleA DOE Joint Genome Institute (JGI) 3300053043 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.03331 -89.35633 136360284 154482 41 4 45 4 Unrestricted 12.27 Metagenome 3300002792 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G09K3-12 DOE Joint Genome Institute (JGI) 3300002792 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 83929 283 18 0 29 2 SRX1991299 Unrestricted 0.0 Metagenome 3300049205 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - J2_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049205 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 501810514 1068583 482 14 856 22 Unrestricted 0.0 Metagenome 3300036685 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPN1-1-X1 DOE Joint Genome Institute (JGI) 3300036685 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3569 19.0502 283482342 472566 91 4 108 5 SRX8861424 Unrestricted 29.38 Metagenome 3300022750 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L149-409B-1 DOE Joint Genome Institute (JGI) 3300022750 Metagenome Analysis spades v. 3.11.1-check Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 750494808 1483527 475 107 679 162 SRX4801551 Unrestricted 13.1 Metagenome 3300005794 *Microbiome Permanent Draft Subglacial freshwater microbial communities from Lake Whillans, Antarctica Subglacial sediment microbial community from Lake Whillans, Antarctica - at 0-2 cm depth The Marine Biological Laboratory 3300005794 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes aachberger1216@gmail.com Amanda Achberger No Environmental Aquatic Subglacial lake Deep subsurface Sediment sediment -84.24 -153.694 12994523 23250 12 0 21 0 0.0 Metagenome 3300001836 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM27, ROCA_DNA191_0.2um_MCP-N_C_3a 3300001836 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Lotic Freshwater Unclassified Marine plankton -0.083883 -51.051417 71504894 169079 22 4 68 5 0.0 Metagenome 3300015079 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Storglaciaren, Tarfala, Sweden (Sample st-6b, vegetation/snow interface) University of Bristol 3300015079 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.865505 16.714941 6.5 96714442 210285 117 18 205 27 0.0 Metagenome 3300031842 *Microbiome Permanent Draft Microbial communities from the deep biosphere Freshwater microbial communities from subglacial Lake Whillans, West Antarctica - SLW_4_6cm re-assembly The Marine Biological Laboratory 3300031842 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Subglacial lake Freshwater Unclassified Freshwater -84.267 -153.209 161750724 433951 189 6 357 7 SRX2064701 0.0 Metagenome 3300059363 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.20W.10 SIP fraction DOE Joint Genome Institute (JGI) 3300059363 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 119538624 217380 102 11 180 29 Unrestricted 10.26 Metagenome 3300014826 *Microbiome Permanent Draft Ruminant gut microbial communities from various locations in USA Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1366 University of Missouri 3300014826 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen 41.314168 -105.584589 337153485 696501 206 9 441 9 SRX331734 0.0 Metagenome 3300037180 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 711 P-1-M DOE Joint Genome Institute (JGI) 3300037180 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0473 785312745 1577247 292 30 538 50 SRX8145072 Unrestricted 7.62 Metagenome 3300049490 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from New Mexico, USA - lajara_2019_sed_WHONDRS-S19S_0034 DOE Joint Genome Institute (JGI) 3300049490 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 35.8677 -106.5233 255142399 620552 633 10 1223 14 Unrestricted 10.66 Metagenome 3300049925 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Sangha River, Lobeke National Park, Cameroon - CONGO_017 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300049925 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 2.2232 16.1901 209145626 527976 224 11 381 11 Unrestricted 0.0 Metagenome 2016842009 *Microbiome Permanent Draft Nasutitermes corniger hindgut microbial communities from the University of Florida, USA Nasutitermes corniger P3 gut segment microbial communitites from University of Florida, USA - 1 DOE Joint Genome Institute (JGI) 2016842009 Metagenome Analysis released by JGI data releasing policy No Yes phugenholtz@lbl.gov Phil Hugenholtz No Host-associated Arthropoda: Insects Hindgut Digestive system Paunch/P3 segment Nasutitermes corniger hindgut 26.135833 -80.129444 10839613 11025 46 0 26 0 0.0 Metagenome 3300031259 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_3 DOE Joint Genome Institute (JGI) 3300031259 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 1118345175 2116206 474 66 685 105 SRX5799196, SRX5799195 Unrestricted 0.0 Metagenome 3300005070 *Microbiome Permanent Draft Hypersaline water metagenomes of microbial communities from Lake Tyrrell, Victoria, Australia Lake Tyrrell, January 2009, 0.8 - 0.1 um size fraction, water metagenome HAT J. Craig Venter Institute 3300005070 Metagenome Analysis Newbler v2.7 Released per submitter's request No Yes eallen@ucsd.edu Eric Allen No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline water -35.309 142.7795 7.1 354884337 992098 824 0 1335 1 0.0 Metagenome 3300038477 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 E2 5-9 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300038477 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0466 716217248 1541861 435 11 748 14 SRX8138423, SRX8138422 Unrestricted 0.0 Metagenome 3300010381 *Microbiome Permanent Draft Methanogenic microbial communities from bioreactors in Yantai Institute of Oceanology, CAS, Yantai, China Methanogenic microbial communities from bioreactors in Yantai Institute of Oceanology, CAS, Yantai, China - reactor 2 Beijing Novogene Bioinformatics Technology Co., Ltd 3300010381 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes limeng848@gmail.com MENG LI No Engineered Bioreactor Marine sediment inoculum Continuous culture Unclassified bioreactor 37.0 121.0 55821570 74862 94 6 168 24 0.0 Metagenome 3300045216 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_5_B DOE Joint Genome Institute (JGI) 3300045216 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 177551340 222218 100 1 117 2 Unrestricted 112.08 Metagenome 3300070924 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dead Lake, Alabama, USA - DELA_037-M-20190626-COMP-DNA1 3300070924 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 5567159 18620 39 3 81 9 0.0 Metagenome 3300012678 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ288 (22.06) DOE Joint Genome Institute (JGI) 3300012678 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.0557 163.7304 915505664 1996511 571 1 952 3 SRX3369488 Unrestricted 0.0 Metagenome 3300016445 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 DOE Joint Genome Institute (JGI) 3300016445 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Unclassified Soil 18.321 -65.8172 3075011110 6641259 1115 17 2118 44 SRX5313694, SRX3604229 Unrestricted 0.0 Metagenome 3300024520 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1 DOE Joint Genome Institute (JGI) 3300024520 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Inlet Marine Unclassified seawater 50.0528611 -123.8211389 1425680294 3482532 627 43 1092 94 SRX4480267 Unrestricted 9.41 Metagenome 3300012333 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100625 University of Pennsylvania 3300012333 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17782774 45785 22 0 45 1 SRX756469 0.0 Metagenome 3300037462 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Sediment microbial communities from wetlands near Prado wetlands, California, USA - CSM_Prado_Jun18_A3_Bubble DOE Joint Genome Institute (JGI) 3300037462 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 2292086553 3261215 615 202 879 233 SRX9164571 Unrestricted 19.66 Metagenome 3300003543 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS898_N3Area_DNA 3300003543 Metagenome Analysis CLC genomics workbench 7.0 released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.943716 -129.985163 914957800 1940104 412 36 1109 67 0.0 Metagenome 3300029604 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36243 Beijing Genomics Institute (BGI) 3300029604 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 205752412 250378 147 0 199 0 0.0 Metagenome 3300021539 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Stylissa sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina ""control"", st32ic 200bp no Eukaryotes last" University of New South Wales 3300021539 Metagenome Analysis IDBA-UD released by Emmanuelle BOTTE Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Stylissa sp. -9.828217 150.820517 54822198 114886 33 8 53 10 0.0 Metagenome 3300060398 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210617_21_05 DOE Joint Genome Institute (JGI) 3300060398 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 357593401 525515 199 82 235 93 Unrestricted 42.36 Metagenome 3300036959 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - AD1 21 II DOE Joint Genome Institute (JGI) 3300036959 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 478896393 877704 509 4 743 12 SRX8361236 Unrestricted 18.94 Metagenome 3300027095 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF020 (SPAdes) DOE Joint Genome Institute (JGI) 3300027095 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 25477189 75714 42 2 70 5 SRX2014337 Unrestricted 0.0 Metagenome 3300026800 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 43 (SPAdes) DOE Joint Genome Institute (JGI) 3300026800 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 38843936 90103 45 0 109 1 SRX4340891 Unrestricted 0.0 Metagenome 3300014263 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D1 DOE Joint Genome Institute (JGI) 3300014263 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.05246563 -121.76914021 296321957 719328 367 1 731 2 SRX7182416 Unrestricted 0.0 Metagenome 3300028512 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 6 Selected contigs with viral hallmark genes 2 Autonomous University of Barcelona 3300028512 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 1492463 2160 0 0 0 0 0.0 Metagenome 3300070343 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_007-O-20200722-COMP-DNA1 3300070343 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 39207535 114521 73 26 157 32 0.0 Metagenome 3300011526 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00773 Weill Cornell Medical College 3300011526 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.98 18259383 22032 11 0 19 0 SRX822739 0.0 Metagenome 3300046480 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvCe-C(1) 1-5 DOE Joint Genome Institute (JGI) 3300046480 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0434 473956692 728006 203 5 339 7 Restricted 13.91 Metagenome 3300009027 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG DOE Joint Genome Institute (JGI) 3300009027 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Pond water 37.4971 -122.129 563998784 1191755 537 53 927 79 SRX2523773 Unrestricted 0.0 Metagenome 3300027703 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes) DOE Joint Genome Institute (JGI) 3300027703 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 505528247 1196464 322 2 577 2 SRX4341709 Unrestricted 0.0 Metagenome 3300070620 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_001-O-20200722-COMP-DNA1 3300070620 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 51452468 148095 66 14 150 20 0.0 Metagenome 3300050581 *Microbiome Permanent Draft Lab-enriched beaver dropping microbial communities from Ontario, Canada American beaver droppings microbial community from Toronto, Canada - BD-C msp University of Toronto 3300050581 Metagenome Analysis spades v. 3.12.0 Yes Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Host-associated Mammals Large intestine Digestive system Fecal American beaver droppings 43.66 -79.4 483919628 817065 168 2 363 0 SRX13466131 0.0 Metagenome 3300013927 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00108 Weill Cornell Medical College 3300013927 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.86 21648898 34987 18 0 26 0 SRX822096 0.0 Metagenome 3300029900 *Microbiome Permanent Draft Cryoconite microbial communities around the Greenland ice sheet Cryoconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_U-A2b DMAC, Technical University of Denmark 3300029900 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Ice Freshwater Cryoconite Cryconite 65.41 -38.51 216656245 392669 107 11 169 23 SRX2579834 0.0 Metagenome 3300006121 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE05Oct08 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006121 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 267965880 744538 112 55 193 109 SRX2565222 Unrestricted 0.0 Metagenome 3300061692 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TS24 (refiltered) (version 3) DOE Joint Genome Institute (JGI) 3300061692 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.4139 55767506 55434 77 1 79 1 SRX12729156, SRX12729155, SRX12729154 Restricted 0.0 Metagenome 3300043433 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Jordan River, Gesher Arik, Golan Heights, Israel - jordanrivershai1_2019_sw_WHONDRS-S19S_0058 DOE Joint Genome Institute (JGI) 3300043433 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 32.8993 35.6136 376866088 661748 361 38 578 68 Unrestricted 25.76 Metagenome 3300041805 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - A_27_wk_4 DOE Joint Genome Institute (JGI) 3300041805 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.8655 -106.912 241279706 784678 445 31 880 59 SRX14808476 Unrestricted 6.89 Metagenome 3300029220 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011710-39 Beijing Genomics Institute (BGI) 3300029220 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 134582277 188234 122 0 188 0 0.0 Metagenome 3300044446 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 323-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044446 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9535 -107.0671 478556755 1280890 392 24 700 38 Unrestricted 7.55 Metagenome 3300001313 *Microbiome Permanent Draft Bioengineered switchgrass rhizosphere microbial community from Knoxville, Tennessee, USA Bioengineered switchgrass rhizosphere microbial community from Knoxville, Tennessee, USA - 26-Joint 3300001313 Metagenome Analysis released by JGI data releasing policy No Yes jliu36@utk.edu Jiang Liu No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 35.98 -83.92 1052376 3637 5 2 30 5 0.0 Metagenome 3300039242 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P16_D5 DOE Joint Genome Institute (JGI) 3300039242 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 475571973 700379 122 1 178 1 SRX9635560, SRX9635561 Unrestricted 0.0 Metagenome 3300021485 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Coastal seawater microbial communities from Marineland, Florida, United States - SWA TP1 #3 DOE Joint Genome Institute (JGI) 3300021485 Metagenome Analysis spades v. 3.11.1-check Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6703 -81.2145 153305309 231519 172 0 176 1 SRX3985495 Unrestricted 56.23 Metagenome 3300047566 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Congo - River, Brazzaville, Congo - CONGO_063 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047566 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater -4.3092 15.2356 80598012 188982 135 5 228 20 Unrestricted 0.0 Metagenome 3300056306 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_190529.NP1 DOE Joint Genome Institute (JGI) 3300056306 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 748108237 1529989 382 48 543 84 Restricted 20.32 Metagenome 3300013207 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100757 University of Pennsylvania 3300013207 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 18606215 51238 47 16 117 24 SRX756093 0.0 Metagenome 3300000725 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 6 DOE Joint Genome Institute (JGI) 3300000725 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 20633888 63046 70 18 152 29 SRX4337691 Unrestricted 0.0 Metagenome 3300032179 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2 DOE Joint Genome Institute (JGI) 3300032179 Metagenome Analysis spades v. 3.12.0 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 1472231074 3727730 1152 21 2188 40 SRX5809337 Unrestricted 7.6 Metagenome 2124908004 *Microbiome Draft Poplar biomass bioreactor microbial communities from Brookhaven National Lab, NY Poplar biomass bioreactor microbial communities from Brookhaven National Lab, NY - total biomass decay community v1 DOE Joint Genome Institute (JGI) 2124908004 Metagenome Analysis Newbler released based on JGI ITS No Yes vdlelied@rti.org Daniel van der Lelie Yes 22629327 Engineered Solid waste Composting Wood Bioreactor Poplar biomass bioreactor 40.869444 -72.886667 422235325 923816 543 16 940 0 Unrestricted 0.0 Metagenome 3300000239 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 36 08/11/09 120m DOE Joint Genome Institute (JGI) 3300000239 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.5663346 -123.5193257 214734412 491926 173 8 314 16 Unrestricted 0.0 Metagenome 3300001101 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Section #1 DOE Joint Genome Institute (JGI) 3300001101 Metagenome Analysis Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.973481 -119.476345 37114875 63122 50 17 103 13 SRX3311903 Unrestricted 0.0 Metagenome 3300008074 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764143897 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008074 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 68043657 118606 42 0 80 0 0.0 Metagenome 3300046825 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 soil DOE Joint Genome Institute (JGI) 3300046825 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.587442 -123.193709 6.41 290914123 499026 191 39 381 56 Unrestricted 19.75 Metagenome 3300003911 *Microbiome Permanent Draft Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 DOE Joint Genome Institute (JGI) 3300003911 Metagenome Analysis revert back to private per Christa Yes Yes filipagodoyvitorino@gmail.com, NNIvanova@lbl.gov; filipagodoyvitorino@gmail.com; fgodoyvitorino@gmail.com Filipa Godoy Vitorino, Natalia Ivanova; Filipa Godoy-Vitorino; Filipa Godoy Vitorino No Host-associated Plants Rhizosphere Roots Unclassified Tabebuia heterophylla rhizosphere 18.402889 -66.050054 335770055 853775 551 46 1006 62 SRX2562475 Unrestricted 0.0 Metagenome 3300012816 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - DID2933_E24_FP4 MG DOE Joint Genome Institute (JGI) 3300012816 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie Yes 29545786 Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 85847052 105151 69 0 77 0 SRX3564806 Unrestricted 0.0 Metagenome 3300010230 *Microbiome Permanent Draft Filterable freshwater microbial communities from Conwy River, North Wales, UK Filterable freshwater microbial communities from Conwy River, North Wales, UK. Not filtered control. After WGA Fidelity Systems Inc 3300010230 Metagenome Analysis Phred/Phrap/Consed v. 23.0 released per JGI data release policy Yes Yes stepan.toshchakov@gmail.com Stepan Toshchakov No Environmental Aquatic River Freshwater Unclassified freshwater 53.2 -3.82 114345546 369868 53 6 97 8 0.0 Metagenome 3300006412 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0125m University of Hawaii 3300006412 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 143510018 366667 412 30 652 43 0.0 Metagenome 3300025277 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025277 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 39.48 7.24 310290797 621253 109 0 130 0 SRX2753803 Unrestricted 0.0 Metagenome 3300044505 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal system in Merced County, California, USA - WIN6-9-19-19 DOE Joint Genome Institute (JGI) 3300044505 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.4116 -120.613 798636349 2068038 791 145 1317 228 Restricted 6.7 Metagenome 3300034784 *Microbiome Permanent Draft Sediment microbiome project Sediment microbial communities from wetland pond in Xixi Nat. Park in Hangzhou, Zhejiang, China - 4 Beijing Genomics Institute (BGI) 3300034784 Metagenome Analysis megahit v. 1.1.3 released by JGI data releasing policy No Yes 17826834892@163.com wang binhao No Environmental Aquatic Pond Freshwater Sediment sedimnet 30.268 120.04 111618976 153079 63 1 110 1 0.0 Metagenome 3300000749 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 29JUN2009 hypolimnion DOE Joint Genome Institute (JGI) 3300000749 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu, tmcmahon@engr.wisc.edu; rrmalmstrom@lbl.gov Katherine McMahon, Katherine McMahon; Rex Malmstrom Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300028839 *Microbiome Permanent Draft Microbial communities from Yellowstone National Park hot springs 2017 Hot spring sediment microbial communities from Flat Cone (photo OnOff), Yellowstone National Park, USA - 170627E University of Minnesota 3300028839 Metagenome Analysis SPAdes v. 3.11.0 released by JGI data releasing policy Yes Yes trinityh@umn.edu Trinity Hamilton No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.5684 -110.8636 8.14 475303863 1088432 305 5 359 17 0.0 Metagenome 3300017641 *Microbiome Permanent Draft Sediment Microbiome Project Estuarine sediment microbial communities from York River, Gloucester Point, VA, USA - YR1 Molecular Research LP (MR DNA) 3300017641 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes songb@vims.edu Bongkeun Song No Environmental Aquatic Unclassified Sediment Unclassified sediment 37.254 -76.4969 49067040 136775 64 0 151 0 0.0 Metagenome 3300013173 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100629 University of Pennsylvania 3300013173 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 31513594 74846 26 0 46 1 SRX756465 0.0 Metagenome 3300069530 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_037-O-20170731-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069530 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 101801209 286101 95 12 208 19 0.0 Metagenome 3300030504 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - At.P.e (v2) (version 3) DOE Joint Genome Institute (JGI) 3300030504 Metagenome Analysis spades v. 3.12.0 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 20.6863 -101.8747 173440829 267476 38 88 44 148 SRX2124720 Unrestricted 0.0 Metagenome 3300040785 *Microbiome Draft Soil Surrounding Crystal Geyser Soil bacterial communities from Crystal Geyser area, Utah, United States - A18 University of Calgary 3300040785 Metagenome Analysis SPAdes v. 3.14.1 released by JGI data releasing policy Yes Yes dunfield.bio@gmail.com Dunfield Laboratory No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.9384 -110.1354 412554272 765744 225 4 314 6 0.0 Metagenome 3300020595 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1 DOE Joint Genome Institute (JGI) 3300020595 Metagenome Analysis spades v. 3.10.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling No Environmental Aquatic Epipelagic Marine Unclassified seawater 54.1841 7.9 1058118899 1939231 412 182 546 268 SRX3989314 Unrestricted 35.3 Metagenome 3300041952 *Microbiome Permanent Draft Sediment microbial communities from Muhlbach River near Tubingen, Germany Sediment microbial communities from Muhlbach River near Tubingen, Germany ? MS2a15 reassembly CeGaT 3300041952 Metagenome Analysis SPAdes Hybrid v. 3.11 released by JGI data releasing policy Yes Yes zhe.wang@tum.de Zhe Wang No Environmental Aquatic River Freshwater Sediment Sediment 48.519406 8.984299 4725680004 15839495 1083 33 3116 71 0.0 Metagenome 3300029379 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 075_5_1_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029379 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 272194270 401883 331 0 457 0 0.0 Metagenome 3300009895 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY4 University of New South Wales 3300009895 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 23690109 38908 16 1 25 2 0.0 Metagenome 3300010362 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama - MetaG Plot_22 DOE Joint Genome Institute (JGI) 3300010362 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes cpan@ou.edu Chongle Pan No Environmental Terrestrial Tropical forest Soil Bulk soil Tropical forest soil 9.1086 -79.8436 5105871920 11165149 2117 56 3699 117 SRX2525684 Unrestricted 0.0 Metagenome 3300047628 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA103-TCU DOE Joint Genome Institute (JGI) 3300047628 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6876 -83.5019 227652187 646210 235 22 465 34 Unrestricted 7.32 Metagenome 3300002635 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A1-12 DOE Joint Genome Institute (JGI) 3300002635 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 1020102 3237 38 3 69 1 SRX1991147 Unrestricted 0.0 Metagenome 3300014153 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin06_60_metaG DOE Joint Genome Institute (JGI) 3300014153 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 809448634 1396741 396 0 668 2 SRX3293029 Unrestricted 17.49 Metagenome 3300045573 *Microbiome Draft Lake microbial communities from Canada Lake sediment microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-322 Genome Quebec 3300045573 Metagenome Analysis MEGAHIT v1.0.6 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Lake Sediment 50.537209 -119.500897 65572357 94190 74 8 119 12 0.0 Metagenome 3300007194 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 550534656 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007194 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 146035881 207076 180 0 158 0 0.0 Metagenome 3300027827 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic Ocean affecting the dissolved organic carbon pool Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LV (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027827 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -37.9831 -44.9892 1108151982 2465322 722 59 1137 105 SRX2566721 Unrestricted 0.0 Metagenome 3300025311 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025311 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.53 -107.78 1623491425 2931649 1485 14 2501 30 SRX1991821 Unrestricted 0.0 Metagenome 3300038542 *Microbiome Permanent Draft Oyster larvae and tank water microbial communities from oyster tank in Dauphin Island, Alabama, USA Water microbial communities from Dauphin Island, Alabama, USA - F2W U.S. Food and Drug Administration 3300038542 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Aquaculture Unclassified Water 30.25 -88.11 3030300 7162 11 0 23 0 0.0 Metagenome 3300028520 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 9 Selected contigs with viral hallmark genes 2 Autonomous University of Barcelona 3300028520 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 2287909 3239 0 0 0 0 0.0 Metagenome 3300037481 *Microbiome Permanent Draft Sediment microbial communities from various lakes in Switzerland Sediment microbial communities from Lake Baldegg, Lucerne, Switzerland - LB_5 DOE Joint Genome Institute (JGI) 3300037481 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mark.lever@usys.ethz.ch Mark Alexander Lever No Environmental Aquatic Lake Freshwater Sediment sediment 47.1988 8.2602 462691298 780726 284 6 470 9 SRX9147665 Unrestricted 15.23 Metagenome 3300020376 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000795 (ERX555997-ERR599121) CEA Genoscope 3300020376 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -62.2658 -49.1658 771976005 1723808 190 86 380 136 0.0 Metagenome 3300043040 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10CP15 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043040 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 36863061 91524 69 2 104 6 SRX8377786 Unrestricted 32.27 Metagenome 3300025103 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025103 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.51 -76.2 342833093 748999 47 0 61 0 SRX2928769 Unrestricted 0.0 Metagenome 3300049191 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - E14_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049191 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 448829111 1026546 505 14 887 24 Unrestricted 0.0 Metagenome 3300069454 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_018-M-20140618-COMP-DNA1 re-annotation Argonne National Laboratory 3300069454 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 7782831 23363 37 2 87 3 ERX2134059 0.0 Metagenome 3300001642 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF012 DOE Joint Genome Institute (JGI) 3300001642 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 4731215 14907 40 1 67 4 SRX2014344 Unrestricted 0.0 Metagenome 3300024512 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepC_0h DOE Joint Genome Institute (JGI) 3300024512 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 112177675 274561 125 2 182 3 SRX4547475 Unrestricted 16.47 Metagenome 3300065582 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 769 in Veteran, Alberta, Canada - S00JY_0228 Microbiome Insights 3300065582 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.01390508 -111.1006914 96441059 144634 54 0 97 1 0.0 Metagenome 3300043960 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TS12 DOE Joint Genome Institute (JGI) 3300043960 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.4139 118924194 162912 125 11 129 12 SRX12658615 Unrestricted 173.89 Metagenome 3300057197 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2020-0011 DOE Joint Genome Institute (JGI) 3300057197 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.76265 -83.329 479147538 1006256 336 174 526 247 Unrestricted 14.77 Metagenome 3300006885 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Final time point T34 (3) (live) benzoate enrichments of Methanogenic microbial communities using Athabasca oil sands as inoculum Shell Corporation 3300006885 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 49588317 79834 60 0 91 0 0.0 Metagenome 7000000537 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159369152 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000537 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 17484433 35841 0 0 0 0 0.0 Metagenome 3300046097 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_1 DOE Joint Genome Institute (JGI) 3300046097 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 141280899 356181 439 58 757 94 Unrestricted 0.0 Metagenome 3300011409 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT423_2 DOE Joint Genome Institute (JGI) 3300011409 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8895 -106.9075 247928056 532172 233 27 478 39 SRX3368478 Unrestricted 0.0 Metagenome 3300054077 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_16_150 re-annotation DOE Joint Genome Institute (JGI) 3300054077 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 334429071 697973 200 7 328 9 SRX3006650 0.0 Metagenome 3300029778 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 074_4_28_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029778 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 205058795 284891 222 0 254 0 0.0 Metagenome 3300009985 *Microbiome Permanent Draft Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions Switchgrass associated microbial communities from Austin, Texas, USA - LS_101 metaG DOE Joint Genome Institute (JGI) 3300009985 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes esinger@lbl.gov; twoyke@lbl.gov Esther Singer; Tanja Woyke No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass leaf 30.387 -97.7301 36910399 77712 71 6 137 9 SRX4807285 Unrestricted 0.0 Metagenome 3300028175 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_135m DOE Joint Genome Institute (JGI) 3300028175 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified marine 48.6 -123.5 327143136 593599 194 2 319 9 SRX5244627 Unrestricted 32.66 Metagenome 3300001295 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - Naphthalene biodegradation metagenome 13C5doseB DOE Joint Genome Institute (JGI) 3300001295 Metagenome Analysis No Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 38.5382364 -121.7639012 121396 467 0 0 4 0 Unrestricted 0.0 Metagenome 3300042606 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Neotermes meruensis from Talek, Kenya - Nm470 Eurofins MWG Operon 3300042606 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut -1.46878 35.289799 1260721902 1370600 252 32 300 38 0.0 Metagenome 3300050562 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_SEK1_3_to_SEK1 DOE Joint Genome Institute (JGI) 3300050562 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.244 502629311 762774 285 144 466 213 Unrestricted 26.94 Metagenome 3300055283 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere DOE Joint Genome Institute (JGI) 3300055283 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121108 -123.269142 246474971 506397 173 29 278 48 Unrestricted 13.45 Metagenome 3300029212 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011687-108 Beijing Genomics Institute (BGI) 3300029212 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 134227407 182263 110 1 169 1 0.0 Metagenome 3300001400 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012 DOE Joint Genome Institute (JGI) 3300001400 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 26755785 81465 100 10 167 22 SRX1987640 Unrestricted 0.0 Metagenome 3300070612 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountains, Colorado, USA - RMNP_002-O-20200629-COMP-DNA2 3300070612 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 11386761 36366 59 20 105 19 0.0 Metagenome 3300048446 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_160706.NP1 DOE Joint Genome Institute (JGI) 3300048446 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 869613878 1902553 496 124 761 171 Unrestricted 11.39 Metagenome 3300027334 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027334 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 194425654 491062 203 66 379 97 SRX3312087 Unrestricted 0.0 Metagenome 3300013766 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A26_65cm_6M University of Tennessee 3300013766 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 332522874 790328 103 6 229 8 SRX710586 0.0 Metagenome 3300025524 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB136-A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025524 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.299 -156.61 222074048 562592 238 5 405 6 SRX2895659 Unrestricted 0.0 Metagenome 3300026108 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_Bottom_ad_3770_LV_A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026108 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 295447523 622842 345 14 549 27 SRX2779516 Unrestricted 0.0 Metagenome 3300049069 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - E26_B_BS (version 2) DOE Joint Genome Institute (JGI) 3300049069 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 179435187 407425 465 12 1032 19 Unrestricted 0.0 Metagenome 3300043664 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 376-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043664 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9905 -107.0616 568712508 1454884 465 32 778 56 Unrestricted 7.13 Metagenome 7000000418 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 158337416 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000418 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 210641967 329347 0 0 0 0 0.0 Metagenome 3300032296 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains Ecozone, Canada - Lake 08-186 Genome Quebec 3300032296 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.101728 -79.828869 554812213 1181466 200 33 350 53 0.0 Metagenome 3300004074 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_ThreeSqA_D1 DOE Joint Genome Institute (JGI) 3300004074 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.131752 -122.266335 655948080 2064863 825 20 1656 35 SRX7146208 Unrestricted 0.0 Metagenome 3300014799 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS45_0 University of Hohenheim 3300014799 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 148126176 224538 85 1 125 0 0.0 Metagenome 3300021128 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 20AUG2007 epilimnion DOE Joint Genome Institute (JGI) 3300021128 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 75579276 174802 84 17 135 21 Unrestricted 0.0 Metagenome 3300006420 *Microbiome Permanent Draft Deep-sea sediment bacterial and archaeal communities Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten IV Center for Biotechnology (CeBiTec), Bielefeld Univeristy 3300006420 Metagenome Analysis Spades 3.6.0 released per JGI data release policy Yes Yes jrapp@mpi-bremen.de Josephine Rapp No Environmental Aquatic Unclassified Marine Unclassified sediment 1099714353 3272678 425 38 802 92 0.0 Metagenome 3300006995 *Microbiome Permanent Draft Cephalotes ants gut microbiomes Ant gut microbial communities from Cephalotes angustus, Brazil Harvard University 3300006995 Metagenome Analysis IDBA-UD released by Yi Hu Yes Yes pl356@drexel.edu, yihu.bnu@gmail.com Piotr Lukasik, Yi Hu No Host-associated Arthropoda: Insects Gut Digestive system Unclassified ant gut -12.5 -70.1 21471093 46039 22 1 31 1 0.0 Metagenome 3300011615 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00887 Weill Cornell Medical College 3300011615 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.73 -73.86 29218777 41376 10 0 17 0 SRX822851 0.0 Metagenome 3300023218 *Microbiome Permanent Draft Solar saltern microbial communities from the Namib Desert Sediment microbial communities from solar saltern in the Namib Desert, Gobabeb, Namibia - Hosabes sink 2016 Genewiz Inc. 3300023218 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat and sediment -23.5071944 15.07105556 727361195 990345 213 2 297 8 0.0 Metagenome 3300040946 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P16_D5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300040946 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 1362336577 1905580 294 6 422 10 SRX9635560, SRX9635561 Unrestricted 0.0 Metagenome 3300040317 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Jornada LTER, Desert Southwest, NM, USA - JORN_004-M-20170808-COMP-DNA1 Battelle Memorial Institute 3300040317 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Desert Terrestrial soil 32.59068 -106.84254 5176207 14736 25 0 42 0 0.0 Metagenome 3300048505 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_110615.NP2 DOE Joint Genome Institute (JGI) 3300048505 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 550374233 1183763 309 88 489 155 Unrestricted 14.28 Metagenome 3300038784 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog36 BILS 3300038784 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 4240724 11937 16 4 30 5 ERX1594858 0.0 Metagenome 3300011668 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00617 Weill Cornell Medical College 3300011668 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.8 -73.91 29330308 48326 31 0 49 0 SRX822584 0.0 Metagenome 3300009659 *Microbiome Permanent Draft Anaerobic biogas reactor microbial communites from Washington, USA Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_A C12 SIP DNA DOE Joint Genome Institute (JGI) 3300009659 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes dacb@uw.edu David Beck Yes 28895946 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic biogas reactor 47.6525 -122.3049 683966996 1155324 553 0 807 2 SRX2339138 Unrestricted 0.0 Metagenome 3300023265 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L079-202R-5 DOE Joint Genome Institute (JGI) 3300023265 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 474305741 1038753 481 106 882 160 SRX4801191 Unrestricted 9.09 Metagenome 3300005456 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG DOE Joint Genome Institute (JGI) 3300005456 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 5514349741 15295013 3779 224 6457 481 SRX2740406 Unrestricted 0.0 Metagenome 3300030123 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces viral communities from colorectal cancer patient in Ann Arbor, USA - MG100083 University of Michigan 3300030123 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 42.28 -83.74 1901328 3158 0 0 2 0 0.0 Metagenome 7000000465 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763901136 replicate 2 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000465 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 79977193 142031 0 0 0 0 0.0 Metagenome 3300028083 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Miss_RepA_8h DOE Joint Genome Institute (JGI) 3300028083 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 129324337 289307 133 4 209 7 SRX5245413 Unrestricted 16.21 Metagenome 3300045452 *Microbiome Permanent Draft Groundwater microbial communities from wells in Ash Sharqiyah North Governorate, Oman Groundwater microbial communities from well in Ash Sharqiyah North Governorate, Oman - OM20_BA1A_108-132 DOE Joint Genome Institute (JGI) 3300045452 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rachel.spietz@montana.edu Rachel Spietz No Environmental Aquatic Groundwater Freshwater Unclassified groundwater 22.8812 58.7006 254680364 369659 162 6 238 10 Unrestricted 259.98 Metagenome 3300036175 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C6-5B DOE Joint Genome Institute (JGI) 3300036175 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 133081787 414718 280 7 479 10 SRX8805793 Unrestricted 4.74 Metagenome 3300041759 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_50 MetaG AgResearch, New Zealand, Mosgeil 3300041759 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1202704645 2347175 266 19 970 35 0.0 Metagenome 3300000942 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY89 J. Craig Venter Institute (JCVI) 3300000942 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 171424941 815585 56 48 164 95 0.0 Metagenome 3300000404 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5 v4 (version 4) DOE Joint Genome Institute (JGI) 3300000404 Metagenome Analysis Velvet released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300042454 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28May2003-ww0467 DOE Joint Genome Institute (JGI) 3300042454 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 622713926 920818 161 53 226 78 Unrestricted 25.31 Metagenome 3300042829 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144 NMDC pilot DOE Joint Genome Institute (JGI) 3300042829 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92045766 -106.94845279 1005571372 2377246 497 6 873 14 SRX5354691 0.0 Metagenome 3300027693 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027693 Metagenome Analysis spades v. 3.11.1 Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0956 -99.1001 466521412 1146678 601 25 1108 36 SRX2753783 Unrestricted 0.0 Metagenome 3300029070 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 10_4M Beijing Genomics Institute (BGI) 3300029070 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 31211751 32941 21 0 22 0 ERX490928 0.0 Metagenome 3300011582 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00942 Weill Cornell Medical College 3300011582 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.69 -73.91 23197420 37534 14 0 16 0 SRX822905 0.0 Metagenome 3300039093 *Microbiome Permanent Draft Seagrass microbial communities from Seahorse Key, Florida, USA Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 University of Florida 3300039093 Metagenome Analysis Megahit v. 1.1.4 released by JGI data releasing policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Plants Unclassified Rhizome Unclassified seagrass rhizome 29.14 -83.685 215179602 264702 58 4 95 8 0.0 Metagenome 3300037670 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR14_NA24 DOE Joint Genome Institute (JGI) 3300037670 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Crustal Fluids crustal fluids 47.761 -127.7612 331741481 629470 382 2 625 1 SRX9096612 Unrestricted 70.36 Metagenome 3300070357 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Alaska, USA - DEJU_002-O-20180619-COMP-DNA1 3300070357 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 17345012 52539 90 40 165 51 0.0 Metagenome 3300055488 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.4W.11 SIP fraction DOE Joint Genome Institute (JGI) 3300055488 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 211101430 347695 190 34 324 60 Unrestricted 18.59 Metagenome 3300029794 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 053_3_14_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029794 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 293143629 388599 280 0 394 0 0.0 Metagenome 3300039705 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA Corn field soil microbial communities from Boone County, Iowa, USA - CC21-WS-July2012 Iowa State University 3300039705 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land Corn field soil 42.01375 -93.783837 46105000 141865 109 10 281 15 0.0 Metagenome 3300049584 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 DOE Joint Genome Institute (JGI) 3300049584 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.407926 -82.180036 1213063248 2081308 520 21 1000 33 Unrestricted 14.99 Metagenome 3300000062 *Microbiome Draft Passalidae beetle gut microbial communities from Costa Rica Passalidae beetle gut microbial communities from Costa Rica -Larvae (1ML+1BSL) DOE Joint Genome Institute (JGI) 3300000062 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes davidhs@lsi.umich.edu, davidhs@umich.edu David Sherman No Host-associated Arthropoda: Insects Gut Larva Unclassified Passalidae beetle gut 10.207151 -84.007673 511653920 1063212 811 6 1455 8 Unrestricted 0.0 Metagenome 3300012188 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ330 (21.06) DOE Joint Genome Institute (JGI) 3300012188 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.059 163.688 853015893 1850995 558 6 859 10 SRX3369866 Unrestricted 0.0 Metagenome 3300038436 *Microbiome Permanent Draft Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA - DeMMO6 v2 Argonne National Laboratory 3300038436 Metagenome Analysis Megahit v. 1.0.6.1 Release as per PI request (GOLD-1409) SM 8.16.2021 No Yes lmmomper@gmail.com; maggie@northwestern.edu Caitlin Casar; Magdalena Osburn No Environmental Terrestrial Aquifer Deep subsurface Unclassified Terrestrial subsurface fluids 44.350833 -103.765833 6.61 399721960 462397 149 1 219 1 0.0 Metagenome 3300047475 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_191030.NP1 DOE Joint Genome Institute (JGI) 3300047475 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 298802861 641568 316 73 481 111 Unrestricted 8.33 Metagenome 3300025027 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-31 (SPAdes) DOE Joint Genome Institute (JGI) 3300025027 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 48.969 -130.6661 49626844 108026 14 2 10 4 Unrestricted 0.0 Metagenome 3300070585 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_005-M-20180724-COMP-DNA1 Battelle Memorial Institute 3300070585 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.149339 -99.251928 7.73-8.01 2084964 6643 17 4 19 7 0.0 Metagenome 3300042530 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0530L_E14_082316_2047 DOE Joint Genome Institute (JGI) 3300042530 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.1836 -97.9974 260097675 741436 386 19 784 33 Unrestricted 6.93 Metagenome 3300043349 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 168-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043349 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9371 -107.0125 597052295 1602014 491 32 913 51 Unrestricted 6.84 Metagenome 3300040652 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Jones Ecological Research Center, Southeast, GA, USA - JERC_049-M-20170725-COMP-DNA1 Battelle Memorial Institute 3300040652 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.19484 -84.46861 2055617 6548 27 5 35 6 0.0 Metagenome 7000000213 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159247771 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000213 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 93744364 147956 0 0 0 0 0.0 Metagenome 3300054574 *Microbiome Permanent Draft Co-cultures of unialgal cyanobacteria with co-existing heterotrophic bacteria from Dresden University of Technology, Germany Co-culture of unialgal cyanobacterium with co-existing heterotrophic bacterium from Dresden University of Technology, Germany - Calothrix_61.4/Streptobacillus DOE Joint Genome Institute (JGI) 3300054574 Metagenome Analysis MetaFlye v. 2.9-b1768 released based on JGI ITS Yes Yes paul.dagostino@tu-dresden.de Paul M. D'Agostino No Host-associated Microbial Unclassified Bacteria Unclassified Lab culture 51.028586 13.73135 7724319 8802 2 0 3 0 Restricted 0.0 Metagenome 3300039939 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_003-M-20140116-COMP-DNA1 Argonne National Laboratory 3300039939 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 19915576 60131 68 5 144 10 ERX2133937 0.0 Metagenome 3300026784 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01.2K2-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026784 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 23738785 79084 80 3 151 1 SRX2576177 Unrestricted 0.0 Metagenome 3300014882 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231B'_16_10D DOE Joint Genome Institute (JGI) 3300014882 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9225 -106.9515 283140185 629692 253 14 490 25 SRX3780465 Unrestricted 5.01 Metagenome 3300027146 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepC_0h DOE Joint Genome Institute (JGI) 3300027146 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 148203088 294916 113 16 187 20 SRX5245215 Unrestricted 20.81 Metagenome 3300005604 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV63 DOE Joint Genome Institute (JGI) 3300005604 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 732676736 1929442 770 4 1273 9 SRX2782343 Unrestricted 0.0 Metagenome 3300008224 *Microbiome Permanent Draft Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico and Hudson Canyon, USA Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1E Hudson Canyon DOE Joint Genome Institute (JGI) 3300008224 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mcredmond@uncc.edu Molly C. Redmond No Environmental Aquatic Cold seeps Marine Unclassified Methane seep mesocosm 39.55 -72.4 701739888 1426478 1248 12 2211 15 SRX2754391 Unrestricted 0.0 Metagenome 3300004098 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius algarvensis Type A CAVOLI.2 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300004098 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 601786095 1387305 22 6 24 9 SRX2712538 Unrestricted 0.0 Metagenome 3300003385 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A3w-12 DOE Joint Genome Institute (JGI) 3300003385 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 647526 2245 31 2 44 6 SRX2576264 Unrestricted 0.0 Metagenome 3300001877 *Microbiome Permanent Draft Desert and grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils - Sample 5 3300001877 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Terrestrial Unclassified Soil Grasslands Desert and grassland soil 23.850674 69.734802 0 0 0 0 0 0 0.0 Metagenome 3300049360 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - 3-3 DOE Joint Genome Institute (JGI) 3300049360 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 390726675 1095687 478 6 855 10 Unrestricted 6.7 Metagenome 3300049742 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 DOE Joint Genome Institute (JGI) 3300049742 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.407926 -82.180036 2123808455 3447154 758 17 1227 39 Unrestricted 14.86 Metagenome 3300040021 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 042_R1_022417 University of Maryland 3300040021 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 61.09211111 25.73877778 14971501 26301 17 2 36 2 0.0 Metagenome 3300012449 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100734 University of Pennsylvania 3300012449 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12392950 22943 20 14 38 25 SRX756116 0.0 Metagenome 7000000034 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human left retroauricular crease microbial communities from NIH, USA - visit 2 of subject 763961826 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000034 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 11302778 19381 0 0 0 0 SRX024931 0.0 Metagenome 3300011744 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00269 Weill Cornell Medical College 3300011744 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.75 -73.97 16139466 18478 12 0 9 0 SRX822242 0.0 Metagenome 3300035088 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 DOE Joint Genome Institute (JGI) 3300035088 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 39.6589 -79.9058 847818509 2277882 881 63 1538 110 SRX8289297 Unrestricted 6.51 Metagenome 3300051382 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - ATCcR3C-14 DOE Joint Genome Institute (JGI) 3300051382 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 119102029 167624 80 5 104 6 Unrestricted 156.16 Metagenome 3300005220 *Microbiome Permanent Draft Microbial communities from the Yellowstone National Park, bulk metagenomes as controls for mini-metagenomic methods Norris Geyser Basin Crystal Spring 9 - Microbial communities from the Yellowstone National Park, bulk metagenomes as controls for mini-metagenomic methods Stanford University 3300005220 Metagenome Analysis SpadeV3 released per JGI data release policy No Yes brianyu@stanford.edu, brian.yu@czbiohub.or Brian Yu No Environmental Aquatic Hot (42-90C) Thermal springs Acidic hotspring 44.7287 -110.714783 2.3 759013 1673 4 0 5 0 0.0 Metagenome 3300012571 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100497 University of Pennsylvania 3300012571 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 10882892 29141 19 0 33 0 SRX756501 0.0 Metagenome 3300010968 *Microbiome Permanent Draft Inactive Hydrothermal Chimney Metagenome Study Microbial communities from the middle layer of the microbial mat covering an inactive hydrothermal chimney from the Kolumbo submarine volcano, Santorini, Greece - V16_c.mid Hellenic Centre for Marine Research (HCMR) 3300010968 Metagenome Analysis MIRA 4.9.5_2 released by JGI data releasing policy Yes Yes ch.christakis@yahoo.gr Christos Christakis No Environmental Aquatic Hydrothermal vents Marine Microbial mats Hydrothermal chimney microbial mat 36.52 25.48 207028785 336102 290 4 197 5 0.0 Metagenome 3300036839 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_July_plot5_rep2 DOE Joint Genome Institute (JGI) 3300036839 Metagenome Analysis metaspades v. 3.13.0 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6541 -80.6298 1888862069 3203031 620 5 1173 11 SRX8180459 Unrestricted 14.46 Metagenome 3300025236 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP-144 (SPAdes) DOE Joint Genome Institute (JGI) 3300025236 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es; mbsulli@gmail.com Silvia G. Acinas; Matthew Sullivan Yes 27654921 Environmental Aquatic Oceanic Marine Unclassified Deep ocean 29.1475 -23.6838 176821391 317408 106 0 161 0 SRX4924340 Unrestricted 0.0 Metagenome 3300032955 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5 DOE Joint Genome Institute (JGI) 3300032955 Metagenome Analysis spades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified soil 26.5059 -80.2517 3206212658 6607210 1243 109 2109 190 SRX5666034 Unrestricted 8.19 Metagenome 3300060609 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210609_13_09 DOE Joint Genome Institute (JGI) 3300060609 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 471302317 684452 218 184 277 223 Unrestricted 37.02 Metagenome 3300002440 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP06-I2 3300002440 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300031500 *Microbiome Permanent Draft Testing DNA extraction from Arctic samples project reference metagenomes Permafrost active layer microbial community from Axel Heiberg Island, Nunavut, Canada - polygon interior 5cm, replicate 3 iDNA McGill University 3300031500 Metagenome Analysis Canu v. 1.7.1 released by JGI data releasing policy No Yes isabelle.raymond-bouchard@mail.mcgill.ca Isabelle Raymond-Bouchard No Environmental Terrestrial Unclassified Soil Permafrost Permafrost active layer 79.416111 -90.758333 10547831 14231 7 1 9 0 0.0 Metagenome 2081372010 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Singapore and Univ of Illinois at Urbana, that are terephthalate-degrading Wastewater bioreactor microbial communities from Singapore -Terephthalate degrading community (Batch bottle culture DNA_dereplicate_75bp) DOE Joint Genome Institute (JGI) 2081372010 Metagenome Analysis Newbler released per Simon -- IMGSUPP2949 No Yes sgtringe@lbl.gov Susannah Tringe Yes 20686509 Engineered Bioremediation Wastewater Terephthalate Activated sludge Wastewater bioreactor 1.332 103.756 55248643 162634 0 0 0 0 0.0 Metagenome 3300006256 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764325968 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006256 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 147331179 221208 142 0 190 0 0.0 Metagenome 3300010048 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama - MetaG Plot_11 DOE Joint Genome Institute (JGI) 3300010048 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes cpan@ou.edu Chongle Pan No Environmental Terrestrial Tropical forest Soil Bulk soil Tropical forest soil 9.1086 -79.8436 4163965087 8176366 1774 157 2993 286 SRX2525680 Unrestricted 0.0 Metagenome 3300070439 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_042-M-20190805-COMP-DNA1 3300070439 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 13931222 42852 58 5 100 11 0.0 Metagenome 3300005900 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_404 DOE Joint Genome Institute (JGI) 3300005900 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 363461725 1124237 400 12 786 12 SRX2564563, SRX2581034 Unrestricted 0.0 Metagenome 3300043748 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Para, Brazil - FS13 DOE Joint Genome Institute (JGI) 3300043748 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -2.7058 -54.7858 713085250 1839679 356 5 707 12 Unrestricted 7.79 Metagenome 3300044819 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Soil microbial communities from peatland in Alberta, Canada - SB-09-sedgy 0-10 cm DOE Joint Genome Institute (JGI) 3300044819 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4741 -114.8678 750269984 1237669 282 15 448 16 Unrestricted 12.59 Metagenome 3300018468 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_12_40cm DOE Joint Genome Institute (JGI) 3300018468 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 4770277001 11082606 4081 111 6885 176 SRX3105586 Unrestricted 0.0 Metagenome 3300026542 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_09_20cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026542 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 774573427 1456969 500 19 798 22 SRX2728047 Unrestricted 0.0 Metagenome 3300014374 *Microbiome Finished Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India - point GR3 63 Life Technologies 3300014374 Metagenome Analysis MetaVelvet v1.2.01 released by JGI data releasing policy No Yes sarkar.jayeeta12@gmail.com, psar@hijli.iitkgp.ernet.in Pinaki Sar No Engineered Built environment Petroleum sludge Oil refinery Unclassified petroleum sludge 26.18471 91.80725 163787907 547334 400 3 661 2 SRX2510723 0.0 Metagenome 3300036520 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Scytonema hyalinum WJT4-NPBG1 and co-occurring heterotrophs from soil crust from Mojave Desert, Joshua Tree National Park, California, United States - 20190201_50 DOE Joint Genome Institute (JGI) 3300036520 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Soil crust Soil Biological Soil crust 33.9461 -115.9036 83028550 109236 45 2 52 3 SRX8849409 Unrestricted 144.58 Metagenome 3300069606 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from LBJ National Grassland , Southern Plains, TX, USA - CLBJ_032-M-20160817-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069606 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 33.40123 -97.57 3836093 12788 14 0 22 0 0.0 Metagenome 3300018415 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011508AT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300018415 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1582031123 3390124 1489 215 2756 370 SRX4068625 Unrestricted 18.64 Metagenome 3300037392 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - HF_080817 DOE Joint Genome Institute (JGI) 3300037392 Metagenome Analysis metaspades v. 3.13.0 Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.9002 -89.352 184252502 395385 526 66 965 117 SRX9381655 Unrestricted 15.88 Metagenome 3300001956 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Rangirora Atoll, Polynesia Archipelagos - GS051 J. Craig Venter Institute (JCVI) 3300001956 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine -15.143611 -147.435 83225611 150651 76 0 102 2 0.0 Metagenome 3300024959 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 88_LOW11 (SPAdes) DOE Joint Genome Institute (JGI) 3300024959 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 90940772 138299 40 2 53 6 SRX2721165 Unrestricted 0.0 Metagenome 2010170003 *Microbiome Draft Hot spring microbial communities from Bison Spring, Yellowstone National Park, USA, analyzing thermal gradients 5_050719P DOE Joint Genome Institute (JGI) 2010170003 Metagenome Analysis lucy / pga No Yes eshock@asu.edu Everett Shock No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6 -110.9 50211307 74755 27 0 59 0 Unrestricted 0.0 Metagenome 3300013721 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00864 Weill Cornell Medical College 3300013721 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -73.83 26803886 36278 7 0 14 0 SRX822830 0.0 Metagenome 2077657010 *Microbiome Draft Saline water microbial communities from Great Salt Lake, Utah Saline water microbial communities from Great Salt Lake, Utah, sample from South Arm Stromatolite DOE Joint Genome Institute (JGI) 2077657010 Metagenome Analysis Newbler released based on JGI ITS No Yes bcweimer@ucdavis.edu Bart Weimer, Bart C. Weimer No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline water 41.454358 -112.666397 156436365 408636 0 0 0 0 Unrestricted 0.0 Metagenome 3300060415 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210601_05_13 DOE Joint Genome Institute (JGI) 3300060415 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 674830866 1003105 285 106 390 126 Unrestricted 31.54 Metagenome 3300035556 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_1_11_6 mgh University of Alberta 3300035556 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 66087940 85810 34 0 48 0 0.0 Metagenome 3300013354 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01600 Weill Cornell Medical College 3300013354 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.88 -73.87 96924040 221977 74 1 107 4 SRX823415 0.0 Metagenome 3300011360 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00981 Weill Cornell Medical College 3300011360 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.61 -73.81 32127673 54935 18 0 22 0 SRX822943 0.0 Metagenome 3300038967 *Microbiome Permanent Draft Peat microbial communities from Marcell Experimental Forest bog in Minnesota, USA Peat microbial communities from Marcell Experimental Forest bog in Minnesota, USA - MG_Fen1_75cm Georgia Institute of Technology 3300038967 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog Peat 47.505 -93.489 152559292 246337 72 0 115 0 SRX2730441 0.0 Metagenome 7000000032 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2 of subject 159207311 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000032 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 214500122 335670 0 0 0 0 0.0 Metagenome 3300011742 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01405 Weill Cornell Medical College 3300011742 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.59 -73.97 34187649 54565 21 0 33 0 SRX823345 0.0 Metagenome 3300051384 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - ATCcR1D-14 DOE Joint Genome Institute (JGI) 3300051384 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 520550858 797206 359 15 496 21 Unrestricted 41.85 Metagenome 3300038655 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Jabs Lake, Antarctica - #4 Australian Centre for Ecogenomics 3300038655 Metagenome Analysis Spades v. 3.13.0 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.558283 78.277867 189684981 379049 128 21 220 32 0.0 Metagenome 3300049744 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 DOE Joint Genome Institute (JGI) 3300049744 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.407926 -82.180036 1263828154 2084208 483 30 886 50 Unrestricted 15.13 Metagenome 3300052881 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T28 D (v2) (version 2) DOE Joint Genome Institute (JGI) 3300052881 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7258 -64.1908 32716412 107568 13 2 24 2 Restricted 0.0 Metagenome 3300002220 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011 McGill University 3300002220 Metagenome Analysis 139801 No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 57.02 -111.55 1281762566 2026354 191 17 377 15 0.0 Metagenome 3300032088 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515 DOE Joint Genome Institute (JGI) 3300032088 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.7468 -122.0193 1636495057 3435354 865 271 1363 457 SRX6423767 Unrestricted 16.36 Metagenome 3300059718 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1561A-3 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059718 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2637 -123.4651 167784578 358795 154 69 272 102 SRX2753752 Unrestricted 0.0 Metagenome 3300012909 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1 DOE Joint Genome Institute (JGI) 3300012909 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Soil Agricultural land soil 43.3 -89.38 734621408 1813071 795 114 1570 193 SRX3297424 Unrestricted 4.26 Metagenome 3300020810 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041404US metaG (spades assembly) DOE Joint Genome Institute (JGI) 3300020810 Metagenome Analysis spades v. 3.10.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 757156587 1442866 326 34 529 50 SRX3920144 Unrestricted 31.33 Metagenome 3300001369 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 DOE Joint Genome Institute (JGI) 3300001369 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 62108885 193396 169 25 292 37 SRX3311938 Unrestricted 0.0 Metagenome 3300009510 *Microbiome Permanent Draft Host-associated microbial communities from peat moss Sphagnum species from Minnesota, USA Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG DOE Joint Genome Institute (JGI) 3300009510 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes joel.kostka@biology.gatech.edu Joel Kostka No Host-associated Plants Unclassified Peat moss Unclassified Host-associated 47.5028 -93.4828 2060674307 3251239 869 405 1245 668 SRX3006920 Unrestricted 0.0 Metagenome 3300059765 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1546C-02 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059765 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2311 -123.8825 150844605 311534 140 7 213 4 SRX2753625 Unrestricted 0.0 Metagenome 3300035667 *Microbiome Permanent Draft Forest soil microbial communities from Eldorado National Forest, California, USA Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_CNT_3.3 DOE Joint Genome Institute (JGI) 3300035667 Metagenome Analysis metaspades v. 3.13.0 Yes Yes ndove7@gmail.com Nicholas Dove No Environmental Terrestrial Temperate forest Soil Bulk soil soil 38.8758 -120.4437 2560720426 6249141 1411 79 2632 114 SRX8239516 Unrestricted 8.65 Metagenome 3300005440 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG DOE Joint Genome Institute (JGI) 3300005440 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 4744393835 13644103 3400 111 5718 230 SRX2745026 Unrestricted 0.0 Metagenome 3300001555 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from the Mid Cayman Rise Von Damm vent site (2) Mid Cayman Rise 3300001555 Metagenome Analysis Velvet, MetaVelvet, Minimus released by JGI data releasing policy No Yes menli@umich.edu Meng Li No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 18.3763 -81.7891 4707983 5678 0 0 0 0 0.0 Metagenome 3300012229 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00873 Weill Cornell Medical College 3300012229 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.69 -73.86 18115487 26527 7 0 10 0 SRX822839 0.0 Metagenome 3300047643 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - EG-01_D100 (version 2) DOE Joint Genome Institute (JGI) 3300047643 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3533 19.0466 423631181 752981 340 0 583 0 Restricted 0.0 Metagenome 3300040950 *Microbiome Draft Mollusc gills microbial communities from various hydrothermal vent in Atlantic Ocean Mollusc gills microbial communities from Wideawake hydrothermal vent, Atlantic Ocean - BspSym_Wi_1_11814 Max Planck Institute for Marine Microbiology 3300040950 Metagenome Analysis metaSPAdes v. 3.13 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills -4.8104333 -12.3723667 4410291 4534 1 2 3 1 ERX3367174 0.0 Metagenome 3300043171 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_3000m_C5_15cm20cm (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043171 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.799 -121.0256 473670818 761551 269 1 427 0 SRX8382851 Unrestricted 22.18 Metagenome 3300002900 *Microbiome Permanent Draft Iron-reducing enrichment culture microbial communities from Chocolate Pots hot spring, Yellowstone National Park, Wyoming, USA Vent enrichment cultures of iron-reducing bacteria from Chocolate Pots hot spring, Yellowstone National Park University of Wisconsin, Madison 3300002900 Metagenome Analysis released by Nathaniel Fortney Yes Yes nwfortney@gmail.com, eroden@geology.wisc.edu Nathaniel Fortney, Eric Roden No Environmental Aquatic Hot (42-90C) Thermal springs Neutral Iron-reducing enrichment culture 44.71538 -110.73627 6 42105186 66294 41 0 65 0 0.0 Metagenome 3300003875 *Microbiome Permanent Draft Plastic marine debris microbial communities from the Atlantic Ocean Plastic marine debris microbial communities from the Atlantic Ocean - SEA_0063_20120523_metagen Marine Biological Laboratory 3300003875 Metagenome Analysis CLC workbench 7 released per JGI data release policy No Yes amaral@mbl.edu Linda Amaral-Zettler No Environmental Aquatic Oceanic Marine Unclassified marine 27.32333 -63.565 58861724 146926 30 42 47 53 0.0 Metagenome 3300001387 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from Lau Basin, Pacific Ocean Lau MG2c_1 3300001387 Metagenome Analysis Velvet/1.1.07, MetaVelvet/1.2.02 released by JGI data releasing policy No Yes menli@umich.edu Meng Li No Environmental Aquatic Oceanic Marine Unclassified Hydrothermal vent plume 20.32 176.8 2585461 2614 0 0 1 0 0.0 Metagenome 3300056631 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.18W.10 SIP fraction DOE Joint Genome Institute (JGI) 3300056631 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 173415890 315309 81 5 103 9 Unrestricted 13.35 Metagenome 3300026544 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in the Atlantic and Pacific Ocean Hydrothermal vent microbial communities from East Pacific Rise, Pacific Ocean - CV84 DOE Joint Genome Institute (JGI) 3300026544 Metagenome Analysis spades v. 3.11.1 Yes Yes pgirguis@oeb.harvard.edu Peter Girguis No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent 9.8441 -104.2969 741067616 1466353 594 18 912 22 SRX4801560 Unrestricted 17.76 Metagenome 3300035689 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME26Sep2015-rr0052 DOE Joint Genome Institute (JGI) 3300035689 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1284869530 2423989 694 178 1059 298 SRX8201964 Unrestricted 9.71 Metagenome 3300007953 *Microbiome Permanent Draft Microbial communities from Columbia River Estuary, Oregon, USA Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373A_3um Oregon State University 3300007953 Metagenome Analysis megahit released per JGI data release policy Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Coastal Marine Unclassified estuary water 46.234 -123.9163 169318054 350616 248 211 432 362 0.0 Metagenome 3300030467 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from colorectal cancer patient in Houston, USA - MG100140 University of Michigan 3300030467 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 29.76 -95.37 23607114 45214 47 0 94 0 0.0 Metagenome 3300000640 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 12JUL2007 hypolimnion DOE Joint Genome Institute (JGI) 3300000640 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300023501 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1159 DOE Joint Genome Institute (JGI) 3300023501 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 126636802 252385 69 17 90 23 SRX4397410 Unrestricted 18.76 Metagenome 3300047196 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2014 MH-D_30cm DOE Joint Genome Institute (JGI) 3300047196 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.2129 19.0232 84455245 169810 88 1 166 5 Restricted 76.16 Metagenome 3300038989 *Microbiome Finished Crude oil contaminated agricultural soil mecrobial communities from various regions in India Soil microbial community of crude oil contaminated soil of Digboi region, Assam, India - D2 Eurofins Genomics India Pvt Ltd. 3300038989 Metagenome Analysis CLC Genomic workbench v. 9.5.2 released by JGI data releasing policy No Yes nanditadas753@gmail.com nandita das No Environmental Terrestrial Unclassified Soil Oil-contaminated Soil 27.3951 95.63 216882025 366526 60 6 111 5 0.0 Metagenome 3300018008 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40 DOE Joint Genome Institute (JGI) 3300018008 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 748359065 1357567 362 8 666 16 SRX3960722 Unrestricted 16.12 Metagenome 3300013352 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01611 Weill Cornell Medical College 3300013352 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.81 -73.91 49879119 95273 53 1 81 1 SRX823426 0.0 Metagenome 3300037394 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 20-24 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037394 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3535 19.0472 906545739 1824502 316 19 564 29 SRX4415345, SRX8128074 Unrestricted 0.0 Metagenome 3300027305 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1547A-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027305 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2314 -123.8828 207783401 426179 153 6 218 11 SRX2753626 Unrestricted 0.0 Metagenome 3300007741 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Dobu ""bubble"", co12ds 200bp-25jan2016" University of New South Wales 3300007741 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Coelcarteria singaporensis (marine sponge) -9.73665 150.867667 54745815 103281 48 5 64 4 0.0 Metagenome 3300070745 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_043-M-20190805-COMP-DNA1 3300070745 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 9108998 27912 32 3 70 10 0.0 Metagenome 3300027938 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T3_30-Apr-14 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027938 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 101916964 222958 157 103 238 162 SRX2838893 Unrestricted 0.0 Metagenome 3300000944 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY81 J. Craig Venter Institute (JCVI) 3300000944 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 331353260 1099834 53 27 179 60 0.0 Metagenome 3300000402 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3 v8 (version 8) DOE Joint Genome Institute (JGI) 3300000402 Metagenome Analysis Velvet released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300043056 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8NP15 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043056 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 43966047 99573 61 4 100 6 SRX8379639 Unrestricted 35.7 Metagenome 3300070986 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_043-M-20200708-COMP-DNA1 3300070986 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 24880 84 2 0 5 1 0.0 Metagenome 3300014690 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00282 Weill Cornell Medical College 3300014690 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.73 -73.99 49505361 68553 20 0 27 0 SRX822255 0.0 Metagenome 3300042452 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2010-rd0164 DOE Joint Genome Institute (JGI) 3300042452 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 668330149 993379 287 41 387 54 Unrestricted 15.39 Metagenome 3300001768 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from the Cayman Rise, Cayman Islands Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Deep Background Supr62 3300001768 Metagenome Analysis IDBA_UD k52-k92 step10 released by JGI data releasing policy No Yes Gregory Dick, Sunit Jain No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 18.35 -81.85 116341812 156159 94 1 173 5 0.0 Metagenome 3300019759 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_4_MG DOE Joint Genome Institute (JGI) 3300019759 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Microbial mats Freshwater microbial mat 38.7906 -75.1644 291638201 571461 663 43 1053 78 SRX3982601 Unrestricted 7.21 Metagenome 3300045454 *Microbiome Permanent Draft Groundwater microbial communities from wells in Ash Sharqiyah North Governorate, Oman Groundwater microbial communities from well in Ash Sharqiyah North Governorate, Oman - OM20_BA3A_75 DOE Joint Genome Institute (JGI) 3300045454 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rachel.spietz@montana.edu Rachel Spietz No Environmental Aquatic Groundwater Freshwater Unclassified groundwater 22.8661 58.7105 327680438 419767 164 5 235 13 Unrestricted 187.94 Metagenome 3300045829 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_3_B DOE Joint Genome Institute (JGI) 3300045829 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 132533009 149682 89 2 105 1 Unrestricted 124.17 Metagenome 3300020255 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000131 (ERX556136-ERR599013) CEA Genoscope 3300020255 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 5.9997 73.914 178976453 437122 196 1 306 1 0.0 Metagenome 3300029792 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine giant viral communities collected during Tara Oceans survey from station TARA_041 - TARA_Y100000052 CEA Genoscope 3300029792 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine 14.6059 69.9776 154229359 369303 47 1 70 0 0.0 Metagenome 3300049582 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 DOE Joint Genome Institute (JGI) 3300049582 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.40849 -82.168434 1495513268 2490983 591 21 1089 40 Unrestricted 14.5 Metagenome 3300055371 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Wyoming, USA - R_H1_S1 DOE Joint Genome Institute (JGI) 3300055371 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 41.01183 -106.5411 285413289 519073 381 89 762 133 Unrestricted 0.0 Metagenome 3300000064 *Microbiome Permanent Draft Bovine rumen microbial communities (NEW) from Vernon, TX, USA Bovine rumen microbial communities (NEW) from Vernon, TX, USA Texas A and M University 3300000064 Metagenome Analysis velvet released per Rekha No Yes xsx0613@gmail.com Shangxian Xie No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen 34.154 -99.264 37196857 91433 263 4 501 4 0.0 Metagenome 3300000323 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P20 2000m DOE Joint Genome Institute (JGI) 3300000323 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 49.566667 -138.666667 131828122 323509 141 26 238 43 Unrestricted 0.0 Metagenome 3300011584 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01132 Weill Cornell Medical College 3300011584 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.71 -73.94 31058203 37659 16 0 20 1 SRX823087 0.0 Metagenome 3300001715 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-41 DOE Joint Genome Institute (JGI) 3300001715 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 49.9984 -144.9944 66324520 110439 46 0 90 0 Unrestricted 0.0 Metagenome 3300050316 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_80 DOE Joint Genome Institute (JGI) 3300050316 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.598 161.007 560839108 836596 168 16 218 28 SRX18235940 Restricted 29.32 Metagenome 3300047320 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere DOE Joint Genome Institute (JGI) 3300047320 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5874 -123.1932 799122774 1178493 273 60 412 90 Unrestricted 25.13 Metagenome 3300015188 *Microbiome Permanent Draft Human fecal microbial communities from infant diaper, Dhaka, Bangladesh Human fecal microbial communities from infant diaper, Dhaka, Bangladesh - DMDT001D Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300015188 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes dhtaft@ucdavis.edu Diana Taft No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant feces 23.8103 90.4125 62911826 96562 59 3 92 3 0.0 Metagenome 3300003139 *Microbiome Permanent Draft Pink berry consortia microbial mat communities from Sippewissett salt marsh, Massachusetts, USA Mat microbial community in the pink berry consortia of the Sippewissett salt marsh University of California, Davis 3300003139 Metagenome Analysis idba_ud v. 1.0.9 Made public because these are downloaded from Genbank No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry consortia 41.575836 -70.63923 33200272 56503 19 1 41 2 0.0 Metagenome 3300003666 *Microbiome Permanent Draft Coalbed water microbial communities from the Lithgow State Coal Mine, New South Wales, Australia Lithgow State Coal Mine Metagenomic Study (LSCM3 Early) 3300003666 Metagenome Analysis LSCM3 Early released by JGI data releasing policy Yes Yes john_webster89@hotmail.com John Webster No Environmental Aquatic Groundwater Freshwater Coalbed water Coalbed water -33.460524 150.168149 136762258 234695 2366 1 244 5 0.0 Metagenome 3300045530 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Atchafalaya River, Louisiana, USA - NASQAN2011_225 DOE Joint Genome Institute (JGI) 3300045530 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 30.6907 -91.7362 233851573 734264 417 58 805 103 Unrestricted 0.0 Metagenome 3300004210 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG10_big_fil_rev_8/21/14_0.10 DOE Joint Genome Institute (JGI) 3300004210 Metagenome Analysis MEGAHIT v. 0.2.0 revert back to private per Christa Yes Yes jbanfield@berkeley.edu, jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield, Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 1491146785 3194268 4345 24 7616 86 SRX3348159 Unrestricted 0.0 Metagenome 3300014884 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da DOE Joint Genome Institute (JGI) 3300014884 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9229 -106.9517 402736004 915479 310 8 624 23 SRX3780511 Unrestricted 4.76 Metagenome 3300005602 *Microbiome Permanent Draft Soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, under manipulated climate change conditions. Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 DOE Joint Genome Institute (JGI) 3300005602 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jmtalbot@bu.edu, jmtalbot@bu.edu; ptempler@bu.edu Jennifer Talbot, Jennifer Bhatnagar; Pamela Templer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 3010894137 8839356 1430 154 2467 286 SRX2838810 Unrestricted 0.0 Metagenome 3300008222 *Microbiome Permanent Draft Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico and Hudson Canyon, USA Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM9D Gulf of Mexico DOE Joint Genome Institute (JGI) 3300008222 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mcredmond@uncc.edu Molly C. Redmond No Environmental Aquatic Cold seeps Marine Unclassified Methane seep mesocosm 27.37 -90.57 1230878677 2179785 1900 3 2714 2 Unrestricted 0.0 Metagenome 3300043588 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 102-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043588 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9275 -106.9734 400820865 1051503 396 13 760 33 Unrestricted 8.04 Metagenome 3300040654 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone Northern Range (Frog Rock), Northern Rockies, WY, USA - YELL_051-M-20180711-COMP-DNA1 Battelle Memorial Institute 3300040654 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 44.95348 -110.53914 1627119 5619 30 6 48 7 0.0 Metagenome 3300013130 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sediment microbial communities from Lake Kivu, Rwanda - Sediment s2_kivu2a2 DOE Joint Genome Institute (JGI) 3300013130 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.05 29.2062 1750566958 3663812 1557 16 2617 22 SRX3571198 Unrestricted 10.74 Metagenome 3300069573 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_003-M-20140314-COMP-DNA1 re-annotation Argonne National Laboratory 3300069573 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 20855159 63798 50 3 97 7 0.0 Metagenome 3300054572 *Microbiome Permanent Draft Co-cultures of unialgal cyanobacteria with co-existing heterotrophic bacteria from Dresden University of Technology, Germany Contaminated culture of unialgal cyanobacteria from Dresden University of Technology, Germany - Persinema_E4.1 DOE Joint Genome Institute (JGI) 3300054572 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes paul.dagostino@tu-dresden.de Paul M. D'Agostino No Host-associated Microbial Unclassified Bacteria Unclassified Lab culture 51.028586 13.73135 53775371 50954 28 0 28 0 Restricted 337.76 Metagenome 3300026782 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A2-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026782 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 24864771 81596 106 1 182 5 SRX1991199 Unrestricted 0.0 Metagenome 3300014219 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 178_L2_2014-5-9 San Diego State University 3300014219 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 128773 339 11 5 17 12 0.0 Metagenome 3300050564 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_SEK1_5_to_SEK1 DOE Joint Genome Institute (JGI) 3300050564 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.244 346866565 567572 222 76 334 98 Unrestricted 21.53 Metagenome 3300029214 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002665-34 Beijing Genomics Institute (BGI) 3300029214 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 153973771 182782 119 0 160 0 0.0 Metagenome 3300045606 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_2_C DOE Joint Genome Institute (JGI) 3300045606 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 163221260 189045 96 1 120 1 Unrestricted 132.22 Metagenome 3300011949 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00585 Weill Cornell Medical College 3300011949 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.73 -73.98 36745502 53968 12 0 26 0 SRX822552 0.0 Metagenome 3300029889 *Microbiome Permanent Draft Peat microbial communities from Marcell Experimental Forest bog in Minnesota, USA Peat microbial communities from Marcell Experimental Forest bog in Minnesota, USA - MG_T3F_30cm Georgia Institute of Technology 3300029889 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Terrestrial Peat Soil Bog Peat 47.506 -93.454 226657046 374285 65 0 120 0 SRX2730439 0.0 Metagenome 3300001060 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0103 DOE Joint Genome Institute (JGI) 3300001060 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 21.51 -23.45 44742882 104780 61 1 108 1 SRX1983459 Unrestricted 0.0 Metagenome 3300000589 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Coal bed microbial communities from San Jean Basin, New Mexico, USA - CG8 McGill University 3300000589 Metagenome Analysis No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 37.0 -108.0 7.05 4731096 8390 10 0 6 0 0.0 Metagenome 3300035540 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B2.6_Sample2.Rodeo6.Well665 DOE Joint Genome Institute (JGI) 3300035540 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 258307488 423201 249 1 347 3 SRX8351426 Unrestricted 60.02 Metagenome 3300025522 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_1A (SPAdes) DOE Joint Genome Institute (JGI) 3300025522 Metagenome Analysis spades v. 3.11.1 Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 141076510 275045 135 8 202 11 SRX3321851 Unrestricted 0.0 Metagenome 3300043662 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 363-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043662 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9531 -107.0671 345955701 911625 299 20 589 30 Unrestricted 6.35 Metagenome 3300022524 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 20-24 DOE Joint Genome Institute (JGI) 3300022524 Metagenome Analysis spades v. 3.11.1-check Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0469 226631114 390556 97 0 141 0 SRX4415319, SRX8658333 Unrestricted 0.0 Metagenome 3300001940 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Bay of Fundy, Nova Scotia, Canada - GS006 J. Craig Venter Institute (JCVI) 3300001940 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine 45.111668 -64.94666 40280931 72308 28 0 85 0 0.0 Metagenome 3300031455 *Microbiome Permanent Draft Soil and ectomycorrhiza microbial communities from Populus trichocarpa stands in riparian zones in the Pacific Northwest, United States Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S DOE Joint Genome Institute (JGI) 3300031455 Metagenome Analysis spades v. 3.12.0 Yes Yes kpeay@stanford.edu Kabir Peay No Environmental Terrestrial Riparian zone Soil Trees stand soil 48.4473 -122.323 1488413254 3627058 1062 45 1771 95 SRX5650593 Unrestricted 8.5 Metagenome 3300070614 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_003-O-20180723-COMP-DNA1 3300070614 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 3080506 9793 26 3 44 9 0.0 Metagenome 3300048906 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 DOE Joint Genome Institute (JGI) 3300048906 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Rhizoplane Roots Unclassified Rhizoplane soil 42.40581 -85.40228 1172794667 1941587 455 49 722 68 Unrestricted 14.13 Metagenome 3300009058 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02 DOE Joint Genome Institute (JGI) 3300009058 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.234 -123.9135 351430148 711215 376 29 623 43 SRX2753606 Unrestricted 0.0 Metagenome 3300040545 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Jones Ecological Research Center, Southeast, GA, USA - JERC_001-M-20170725-COMP-DNA1 Battelle Memorial Institute 3300040545 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.19484 -84.46861 2658365 8814 46 3 63 8 0.0 Metagenome 3300027332 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S2_30_40 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027332 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228379 -119.2717467 183524385 506605 262 6 436 12 SRX2523286 Unrestricted 0.0 Metagenome 3300026899 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_O3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026899 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 62150590 174052 189 36 375 66 SRX3311917 Unrestricted 0.0 Metagenome 3300000567 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - SII-2010 DOE Joint Genome Institute (JGI) 3300000567 Metagenome Analysis Yes Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 729508221 1535544 313 12 552 22 Unrestricted 0.0 Metagenome 3300033073 *Microbiome Finished Gwangju Wastewater Treatment Plant Virome, South Korea Freshwater viral community from Youngsan river, upstream of Gwangju wastewater treatment plant effluent, Gwangju, South Korea - YSR-up v.1 Macrogen 3300033073 Metagenome Analysis SPAdes v. 3.10.1 released by JGI data releasing policy No Yes chojc@inha.ac.kr Jang-Cheon Cho No Environmental Aquatic River Freshwater Unclassified freshwater 35.090737 126.801828 42484991 58767 0 0 0 0 0.0 Metagenome 7000000005 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 809635352 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000005 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 165289349 325852 0 0 0 0 0.0 Metagenome 3300004072 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleA_D2 DOE Joint Genome Institute (JGI) 3300004072 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.107521 -121.649681 627889209 2139946 896 33 1954 62 SRX7144826 Unrestricted 0.0 Metagenome 3300048863 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD18 DOE Joint Genome Institute (JGI) 3300048863 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.347657 -119.2808 101425916 115148 8 5 12 8 Unrestricted 241.64 Metagenome 3300050231 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Warrenville, Illinois, USA - 80_711_IL_DR_1m_c2_T0_16O DOE Joint Genome Institute (JGI) 3300050231 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 41.84145 -88.2298 1012501433 1590890 275 3 460 4 Restricted 13.13 Metagenome 3300049668 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_B_2_drought DOE Joint Genome Institute (JGI) 3300049668 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 432225359 949996 511 39 950 52 Unrestricted 13.45 Metagenome 3300037779 *Microbiome Permanent Draft Extreme environments viral communities from various locations Glacier ice viral communities from Ngari, Tibet, China - 20_GP2_173.9 DOE Joint Genome Institute (JGI) 3300037779 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Ice Freshwater Glacier ice 35.2833 81.4833 24933428 70640 59 4 106 6 SRX9097353 Unrestricted 712.24 Metagenome 3300034053 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A1A4.3 DOE Joint Genome Institute (JGI) 3300034053 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 240982532 668686 387 4 701 11 SRX7658847 Unrestricted 7.78 Metagenome 3300040406 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 024B_R1 University of Maryland 3300040406 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.29190833 25.14645 5258534 11781 8 1 15 0 0.0 Metagenome 3300038782 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog37 BILS 3300038782 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 3278769 8974 17 1 20 0 ERX1594859 0.0 Metagenome 3300024321 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 31D DOE Joint Genome Institute (JGI) 3300024321 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 268165049 533446 161 16 254 32 SRX4458930 Unrestricted 16.69 Metagenome 3300002456 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Tailings pond microbial communities from Northern Alberta -TP6_2008_30ft: McGill University 3300002456 Metagenome Analysis Unassembled released per JGI data release policy No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Bioremediation Polycyclic aromatic hydrocarbons Persistent organic pollutants (POP) Unclassified Hydrocarbon resource environments 57.02 -111.55 7.26 0 0 0 0 0 0 0.0 Metagenome 3300029141 *Microbiome Permanent Draft Infant fecal microbial communities from Pittsburgh, USA Infant fecal microbial communities from Pittsburgh, USA - NECEvent2014_1_2 Banfield Lab, University of California, Berkeley 3300029141 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant fecal 40.4308 -79.9598 6420864 6415 8 0 11 0 0.0 Metagenome 3300023090 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24 DOE Joint Genome Institute (JGI) 3300023090 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 574154786 987044 218 2 351 7 SRX4415368, SRX8128070 Unrestricted 0.0 Metagenome 3300029867 *Microbiome Permanent Draft North Pond 2012 Aquifer microbial communities from Mid-Atlantic Ridge, Atlantic Ocean - 1382A Re-assembly of 2012 Metagenome The Marine Biological Laboratory 3300029867 Metagenome Analysis IDBA-UD v. 1.1.2 released by JGI data releasing policy No Yes tully.bj@gmail.com; lmseyler@gmail.com Benjamin Tully; Lauren Seyler Yes 26935537 Environmental Aquatic Aquifer Marine Formation fluid marine subseafloor aquifer 22.78 -46.09 25943416 31435 33 11 48 14 0.0 Metagenome 3300026655 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G10K1-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026655 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 5229602 17442 62 1 130 4 SRX1991309 Unrestricted 0.0 Metagenome 3300030502 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - As.Sf.rz (v2) (version 3) DOE Joint Genome Institute (JGI) 3300030502 Metagenome Analysis spades v. 3.12.0 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.7658 -100.163 495529288 1350514 901 111 1741 170 SRX2122696 Unrestricted 0.0 Metagenome 3300028496 *Microbiome Permanent Draft Glacial sediment microbial communities from Siachen glacier, sub-Himalayan, Skardu, Pakistan Glacial sediment microbial communities from Siachen glacier, sub-Himalayan, Skardu, Pakistan - SS SS University of Bristol 3300028496 Metagenome Analysis SPAdes v. 3.11.1 released by JGI data releasing policy No Yes mr14311@my.bristol.ac.uk Muhammad Rafiq No Environmental Aquatic Ice Freshwater Glacier glacial sediment 35.4639 77.0439 7 47880983 57923 9 0 14 3 0.0 Metagenome 3300041954 *Microbiome Permanent Draft Sea ice microbial communities from Coral Harbour, Canada Sea ice microbial communities from Coral Harbour, Canada - CH9C University of Bristol 3300041954 Metagenome Analysis MEGAHIT v. 1.23 released by JGI data releasing policy Yes Yes christopher.bellas@bristol.ac.uk Chris Bellas No Environmental Aquatic Sea ice Marine Unclassified Sea ice 63.993717 -83.336633 1.5 611793341 916319 500 69 623 113 0.0 Metagenome 3300026967 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and E1 (SPAdes) DOE Joint Genome Institute (JGI) 3300026967 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 59204452 88269 49 0 61 0 SRX3311547 Unrestricted 0.0 Metagenome 3300003621 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_85LU_5_DNA DOE Joint Genome Institute (JGI) 3300003621 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 333685606 677416 466 223 847 370 SRX2569218 Unrestricted 0.0 Metagenome 3300071137 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_044-M-20200803-COMP-DNA1 3300071137 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 7403317 23174 30 3 68 2 0.0 Metagenome 3300026047 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rd (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026047 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.000637 -121.624207 63153588 175214 150 0 302 3 SRX7188165 Unrestricted 0.0 Metagenome 3300007192 *Microbiome Permanent Draft Cephalotes ants gut microbiomes Ant gut microbial communities from Cephalotes persimplex, Brazil Harvard University 3300007192 Metagenome Analysis IDBA-UD released by Yi Hu Yes Yes pl356@drexel.edu, yihu.bnu@gmail.com Piotr Lukasik, Yi Hu No Host-associated Arthropoda: Insects Gut Digestive system Unclassified ant gut -12.5 -70.1 230860795 448947 48 1 83 2 0.0 Metagenome 7000000159 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 809635352 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000159 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 81881421 146871 0 0 0 0 0.0 Metagenome 3300027150 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepB_8h DOE Joint Genome Institute (JGI) 3300027150 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 172706692 320849 114 9 154 12 SRX5245226 Unrestricted 19.09 Metagenome 3300010023 *Microbiome Permanent Draft Terrestrial hot spring microbial mat viral communities from Octopus Spring, Yellowstone National Park, Wyoming Terrestrial hot spring microbial mat viral communities from Octopus Spring, Yellowstone National Park, Wyoming (2009) spADES assembly Duke University 3300010023 Metagenome Analysis SPAdes 3.7.1 No Yes mdavison@carnegiescience.edu Michelle Davison No Environmental Aquatic Hot (42-90C) Thermal springs Alkaline Terrestrial Hot Spring Microbial Mat 44.53408 -110.7979 11717912 28216 7 0 14 0 0.0 Metagenome 3300004286 *Microbiome Finished Recombinant microbial communities from the University of Alicante, Spain Recombinant microbial communities from the University of alicante. Spain. 2014. Down 10kb 454 Life Sciences 3300004286 Metagenome Analysis IDBA released per JGI data release policy No Yes pedro.gonzalez@ua.es Pedro Gonz?lez-Torres, Pedro I?aki Gonzalez Torres No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Saltern ponds 38.383458 -0.51203 2859197 3007 0 0 0 0 0.0 Metagenome 3300021289 *Microbiome Permanent Draft Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States - Hobet_Cave_3 DOE Joint Genome Institute (JGI) 3300021289 Metagenome Analysis spades v. 3.11.1-check Yes Yes zachary.freedman@mail.wvu.edu Zachary Freedman No Environmental Terrestrial Surface mine Soil Reclaimed soil 38.083 -81.98 26157464 68281 72 16 121 30 SRX4031148 Unrestricted 6.05 Metagenome 3300010364 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015 DOE Joint Genome Institute (JGI) 3300010364 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 718886824 1794655 604 25 1231 48 SRX2524971 Unrestricted 0.0 Metagenome 3300051647 *Microbiome Permanent Draft Sediment microbial communities from various environments and locations in Europe Sediment microbial communities from Baltic Sea, Sweden - H2D5S (IMG v5.1) (version 2) DOE Joint Genome Institute (JGI) 3300051647 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes o.eyice@qmul.ac.uk Ozge Eyice No Environmental Aquatic Sediment Marine Unclassified Sediment 58.9344 17.7391 906341415 2041168 648 8 1072 13 Unrestricted 0.0 Metagenome 3300022311 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Garden Lake, Rottnest Island (WA - Australia) - GL1GP1 JM106 AGRF 3300022311 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.995604 115.536873 25383888 50976 39 0 67 1 0.0 Metagenome 3300038544 *Microbiome Permanent Draft Oyster larvae and tank water microbial communities from oyster tank in Dauphin Island, Alabama, USA Water microbial communities from oyster tank in Dauphin Island, Alabama, USA - 101W U.S. Food and Drug Administration 3300038544 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Aquaculture Unclassified Water 30.25 -88.11 26679582 47855 44 0 67 0 0.0 Metagenome 3300069452 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_006-M-20140325-COMP-DNA1 re-annotation Argonne National Laboratory 3300069452 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 3810315 11562 40 3 67 4 ERX2134055 0.0 Metagenome 3300000435 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 DOE Joint Genome Institute (JGI) 3300000435 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 877854 2497 49 14 93 10 SRX1985907, SRX1985908 0.0 Metagenome 3300013958 *Microbiome Permanent Draft Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 641 Chalmers University of Technology 3300013958 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 200259496 319735 139 3 252 6 SRX193547 0.0 Metagenome 3300043723 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - I_P72_A100 DOE Joint Genome Institute (JGI) 3300043723 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.1621 -62.8366 474975943 1359107 478 9 873 12 Unrestricted 7.02 Metagenome 3300048037 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_121024.NP2 DOE Joint Genome Institute (JGI) 3300048037 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 1273501866 2957881 676 183 1184 310 Unrestricted 13.49 Metagenome 3300008709 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159753524 replicate 2 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008709 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 58921111 84485 40 0 66 0 0.0 Metagenome 3300011191 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 16 - S13.2.60.1.a - transect 2, repeat 1, age 113 years, surface depth) University of Bristol 3300011191 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes EAEloeFadrosh@lbl.gov; maisie.nash@bristol.ac.uk; ama@envs.au.dk Emiley Eloe-Fadrosh; Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 78.99 12.08277778 7.5 2827176 7547 20 1 45 2 0.0 Metagenome 3300026989 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 M1 (3) (SPAdes) DOE Joint Genome Institute (JGI) 3300026989 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 86451202 129487 51 0 67 0 SRX3311648 Unrestricted 0.0 Metagenome 3300013617 *Microbiome Permanent Draft Coral viral communities from the Great Barrier Reef, Australia Coral viral communities from the Great Barrier Reef, Australia - Pocillopora damicornis (liquid nitrogen) - PDam_LN2_DNA_MDA Australian Institute of Marine Science 3300013617 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral tissue 8863627 12183 1 2 1 4 SRX503393 0.0 Metagenome 3300029033 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 504_M Beijing Genomics Institute (BGI) 3300029033 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 137534835 197829 127 0 203 0 ERX491154 0.0 Metagenome 3300070910 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lyndon B. Johnson National Grassland, Texas, USA - CLBJ_001-M-20190416-COMP-DNA1 3300070910 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 29609 108 4 0 1 0 0.0 Metagenome 2236876021 *Microbiome Permanent Draft Saline water concentrator pond microbial communities from Bras del Port saltern, Santa Pola, Spain Saline water concentrator pond microbial communities from Bras del Port saltern, Spain - SS37 GATC-Biotech AG, Konstanz, Germany 2236876021 Metagenome Analysis released per JGI data release policy No Yes abf@us.es Ana Fernandez No Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Unclassified Saline water concentrator pond 38.11 -0.36 269809237 755227 478 13 864 0 0.0 Metagenome 3300001644 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF045 DOE Joint Genome Institute (JGI) 3300001644 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 6868805 23523 32 1 56 2 SRX2014397 Unrestricted 0.0 Metagenome 3300065584 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 781 in Three Hills, Alberta, Canada - S00JY_0701 Microbiome Insights 3300065584 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.46151696 -113.1723542 187772896 277286 100 4 141 6 0.0 Metagenome 3300024514 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepB_8d DOE Joint Genome Institute (JGI) 3300024514 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 175621211 385189 209 17 343 31 SRX4547356 Unrestricted 12.69 Metagenome 3300025510 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_8Aab (SPAdes) DOE Joint Genome Institute (JGI) 3300025510 Metagenome Analysis spades v. 3.11.1 Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 62162519 96779 61 0 85 0 SRX3322221 Unrestricted 0.0 Metagenome 3300044226 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T32 S DOE Joint Genome Institute (JGI) 3300044226 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7217 -64.1936 330941006 775312 18 0 18 1 Unrestricted 48.45 Metagenome 3300029440 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Sweden Biosolids microbial communities from sewage treatment plant in Sweden - SWESTP10 - Uppsala-digested 111 University of Gothenburg 3300029440 Metagenome Analysis released Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified biosolids 59.844519 17.659844 204790303 340897 178 0 293 0 0.0 Metagenome 3300007316 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159571453 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007316 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 145969304 190039 101 0 136 0 0.0 Metagenome 3300007947 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 764487809 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007947 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 1004198 2680 5 0 15 0 SRX024873 0.0 Metagenome 2022920009 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP1 Alice Springs, Crater Hills v2 (version 2) DOE Joint Genome Institute (JGI) 2022920009 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23720654 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6533633 -110.4776669 2.1 7436946 10602 64 0 7 0 Unrestricted 0.0 Metagenome 3300016673 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water reservoir in Singapore - WB_Site 4, Oct Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016673 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Lake Freshwater Unclassified freshwater 1.35 103.87 88343601 116684 8 0 8 0 0.0 Metagenome 3300069331 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_013-O-20170801-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069331 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 56103600 157817 89 15 160 22 0.0 Metagenome 3300043681 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 429-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043681 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9757 -107.0651 452160853 1211224 488 34 914 41 Unrestricted 7.99 Metagenome 3300039303 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Aphanocapsa lilacina HA4352-LM1 and co-occurring heterotrophs from rock surface from Maniniholo cave, near Haena, Kauai, HI, United States - 20190625_3 DOE Joint Genome Institute (JGI) 3300039303 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Rock surface 22.2199 -159.566 121604844 147866 34 0 47 0 SRX9640137 Unrestricted 139.01 Metagenome 3300007067 *Microbiome Permanent Draft Cephalotes ants gut microbiomes Ant gut microbial communities from Cephalotes spinosus, Peru Harvard University 3300007067 Metagenome Analysis IDBA-UD released by Yi Hu Yes Yes pl356@drexel.edu, yihu.bnu@gmail.com Piotr Lukasik, Yi Hu No Host-associated Arthropoda: Insects Gut Digestive system Unclassified ant gut -12.5 -70.1 94594332 182839 29 2 55 4 0.0 Metagenome 3300035179 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL18G_13-C DOE Joint Genome Institute (JGI) 3300035179 Metagenome Analysis metaspades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5106 -110.3566 1903304421 3329518 1034 8 1719 2 SRX8281383 Unrestricted 23.71 Metagenome 3300033428 *Microbiome Permanent Draft Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_27_06-R3 DOE Joint Genome Institute (JGI) 3300033428 Metagenome Analysis spades v. 3.13.0 Yes Yes ziels@mail.ubc.ca Ryan Ziels No Engineered Bioreactor Unclassified Anaerobic Unclassified sludge 51.9691 5.6654 313967884 499260 345 0 455 2 SRX7542618 Unrestricted 47.36 Metagenome 3300008072 *Microbiome Permanent Draft Microbial Communities in Water bodies, Singapore Microbial Communities in Water bodies, Singapore - Site MA Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300008072 Metagenome Analysis clc genomics workbench 8 released per JGI data release policy No Yes erinscm@nus.edu.sg Charmaine Ng No Environmental Aquatic Unclassified Freshwater Unclassified water bodies 1.3 103.8 137608156 300778 57 10 141 30 0.0 Metagenome 2124908002 *Microbiome Finished Trichechus manatus rumen microbial communities from Placencia lagoon, Belize Contigs of metagenome of rumen microbiota from manatee Trichechus manatus University of Illinois, Urbana-Champaign 2124908002 Metagenome Analysis Newbler released per JGI data release policy No Yes Yuejian Mao No Host-associated Mammals Stomach Digestive system Rumen Trichechus manatus rumen 16.5 -88.366667 44262946 78339 64 2 112 0 0.0 Metagenome 3300039111 *Microbiome Permanent Draft Activated sludge microbial communities from various WWTPs in Denmark Activated sludge microbial communities from WWTP in Aalborg West, Denmark - AAW-1-2012 Aalborg University 3300039111 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified Activated sludge 57.04951 9.864788 151973440 325919 56 0 76 0 0.0 Metagenome 3300047657 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BT18-01_D100 (version 2) DOE Joint Genome Institute (JGI) 3300047657 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3555 19.0492 187066368 265645 90 13 102 21 Restricted 0.0 Metagenome 2014642005 *Microbiome Permanent Draft Marine plankton microbial communities from the deep Mediterranean sea Marine plankton microbial communities from Ionian Km3 Station 2014642005 Metagenome Analysis released per JGI data releasing policy No Yes frvalera@umh.es Francisco Rodriguez-Valera Yes 17878949 Environmental Aquatic Oceanic Marine Unclassified Marine plankton 36.4999 15.693611 7203198 12957 4 0 0 0 0.0 Metagenome 3300006414 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0500m University of Hawaii 3300006414 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 429585532 936802 675 42 959 60 0.0 Metagenome 3300038761 *Microbiome Permanent Draft Marine microbial communities from North Atlantic, Canada Marine microbial communities from North Atlantic, Canada - H12G National Research Council, Canada Plant Biotechnology Institute 3300038761 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 46.707 -48.785 67041176 101636 42 0 57 0 0.0 Metagenome 3300034782 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0606M02 DOE Joint Genome Institute (JGI) 3300034782 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8962 -97.0386 630720513 1545527 629 9 1090 18 SRX8255998 Unrestricted 5.72 Metagenome 3300028754 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157 DOE Joint Genome Institute (JGI) 3300028754 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92057636 -106.94874802 830366444 2162800 554 26 962 47 SRX5354716 Unrestricted 9.98 Metagenome 3300003783 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003783 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 40997366 98955 54 18 94 31 SRX2565403 Unrestricted 0.0 Metagenome 3300027858 *Microbiome Permanent Draft Marine microbial communities from the Santa Barbara Channel oil seeps Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027858 Metagenome Analysis spades v. 3.11.1 Yes Yes mhess@ucdavis.edu Matthias Hess Yes 25197496 Environmental Aquatic Oil seeps Marine Unclassified Marine 34.39192 -119.84578 1533612228 3280392 999 14 1673 18 SRX802075 Unrestricted 0.0 Metagenome 3300055533 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.17W.12 SIP fraction DOE Joint Genome Institute (JGI) 3300055533 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 199499642 359850 145 38 239 65 Unrestricted 14.32 Metagenome 3300005792 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS908_Marker33_DNA Marine Biological Laboratory 3300005792 Metagenome Analysis Ray v. 2.3.1, minimum contig length 1kb released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com; randerson@carleton.edu; elks@mit.edu Caroline Fortunato, Caroline Fortunato; Rika Anderson; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 21979386 31479 4 0 3 2 0.0 Metagenome 3300041011 *Microbiome Permanent Draft Cryoconite microbiome from cryoconites in White Glacier on Axel Heiberg Island, Canada Cryoconite microbial community from White Glacier on Axel Heiberg Island, Canada - Core2dyeA McGill University 3300041011 Metagenome Analysis canu v. 1.9 released by Catherine Maggiori No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Aquatic Ice Freshwater Cryoconite Cryoconite 79.3 -90.5 1135717 1965 5 0 5 0 0.0 Metagenome 3300011205 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01043 Weill Cornell Medical College 3300011205 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.67 -73.89 36365970 46782 16 0 29 0 SRX823005 0.0 Metagenome 3300040529 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Woodworth, Northern Plains, ND, USA - WOOD_003-M-20140702-COMP-DNA1 Argonne National Laboratory 3300040529 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12823 -99.24136 3169828 8844 29 5 53 11 ERX2134002 0.0 Metagenome 3300023487 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_203B University of California, Irvine 3300023487 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 89444471 90658 10 0 24 0 0.0 Metagenome 3300021157 *Microbiome Permanent Draft Freshwater planktonic and plastic biofilm microbial communities in Lake Erie, USA Freshwater plastic biofilm microbial communities from West Central Basin, Lake Erie, Canada - MD2014-0112A University of Michigan 3300021157 Metagenome Analysis Megahit v1.1.1 released by JGI data releasing policy No Yes gumm@umich.edu Jordan Gumm No Environmental Aquatic Lake Freshwater Unclassified lake plastic biofilm 41.94 -81.95 74009227 75409 0 2 0 1 0.0 Metagenome 3300025750 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-311 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025750 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.290565 -156.788622 541170366 1161686 334 2 582 3 SRX1990914 Unrestricted 0.0 Metagenome 3300001499 *Microbiome Finished Human fecal microbial communities from the University of Tokyo, Japan, of healthy Japanese infants and adults Human fecal microbial communities from the University of Tokyo - healthy human sample In-D, Adult, Male 3300001499 Metagenome Analysis PCAP released per Nikos No Yes hattori@k.u-tokyo.ac.jp Hattori M Yes 17916580 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 35.71 139.76 0 0 0 0 0 0 0.0 Metagenome 3300031844 *Microbiome Permanent Draft Microbial communities from the deep biosphere Brine seep microbial communities from Boulby Mine, Loftus, North Yorkshire, England, UK - Sample_2 re-assembly The Marine Biological Laboratory 3300031844 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Unclassified Deep subsurface Unclassified Brine 54.5561 -0.8216 102634099 269963 91 6 161 12 SRX2516631 0.0 Metagenome 7000000287 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human right retroauricular crease microbial communities from NIH, USA - visit 2, subject 15961191 replicate 2 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000287 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 5961778 8941 0 0 0 0 SRX024618, SRX024617 0.0 Metagenome 3300002794 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-C DOE Joint Genome Institute (JGI) 3300002794 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.56 -89.32 1687521 4212 14 0 27 1 SRX1991327 Unrestricted 0.0 Metagenome 3300024496 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepB_8h DOE Joint Genome Institute (JGI) 3300024496 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 160697000 365425 161 23 258 20 SRX4547326 Unrestricted 13.47 Metagenome 3300012079 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Florida, USA - TSFL002 MetaG DOE Joint Genome Institute (JGI) 3300012079 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 27.6213 -81.8137 202715973 367780 393 8 650 11 SRX3539430 Unrestricted 0.0 Metagenome 3300006730 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from Cariaco Basin, Caribbean Sea - 25_WHOI_OMZ DOE Joint Genome Institute (JGI) 3300006730 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 10.847 -65.114 162810015 338177 160 0 267 0 SRX2929261 Unrestricted 0.0 Metagenome 3300066290 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONZ_043-M-20160714-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066290 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.10077 -96.56309 53206819 161775 112 5 239 11 0.0 Metagenome 3300026726 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A3-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300026726 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 18403519 63378 88 1 166 4 SRX1991109 Unrestricted 0.0 Metagenome 3300036366 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C3-7C DOE Joint Genome Institute (JGI) 3300036366 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 48491970 155361 121 4 224 7 SRX8817882 Unrestricted 4.28 Metagenome 3300011925 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S04-07-R University of California, Los Angeles 3300011925 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 73565216 123459 54 0 83 0 SRX858953 0.0 Metagenome 3300011490 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01019 Weill Cornell Medical College 3300011490 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.66 -73.83 20324881 27658 19 0 25 0 SRX822981 0.0 Metagenome 3300007833 *Microbiome Permanent Draft Clones from fosmidial library constructed using mangrove sediment Mangrove sediment microbial communities from Bertioga, Sao Paulo, Brazil - Clones from fosmid library, F7_contig2 Molecular Research LP (MR DNA) 3300007833 Metagenome Analysis IDBA released per JGI data release policy No Yes luc.g.cabral@gmail.com Luc?lia Cabral, Lucelia Cabral No Environmental Aquatic Unclassified Sediment Unclassified sediment -23.8553 -46.1394 15931 16 0 0 0 0 0.0 Metagenome 3300002070 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4 DOE Joint Genome Institute (JGI) 3300002070 Metagenome Analysis Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 246552581 719525 692 39 1143 65 SRX1990942 Unrestricted 0.0 Metagenome 3300042216 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D140_3 DOE Joint Genome Institute (JGI) 3300042216 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 166771347 246693 115 6 175 12 Unrestricted 76.21 Metagenome 3300015678 *Microbiome Permanent Draft compost metatagenome project Household and green waste compost microbial communities from Goettingen compost company, Germany - 55C pile Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory 3300015678 Metagenome Analysis mira4 released by JGI data releasing policy No Yes mingjilv@gmail.com mingji lu No Engineered Solid waste Composting Household waste Unclassified Household- and green- waste compost 51.573639 9.909167 64152064 186510 334 8 522 19 0.0 Metagenome 3300015333 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12JUL2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015333 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 213340787 360339 11 82 6 158 SRX3923313 Unrestricted 7.78 Metagenome 3300017523 *Microbiome Permanent Draft Bras del Port Julio 2014 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CM1 July 2014 University of Valencia 3300017523 Metagenome Analysis idba.1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Non-marine hypersaline water 38.1922 -0.5918 72083044 200961 16 0 37 0 0.0 Metagenome 3300052797 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_TH_022D DOE Joint Genome Institute (JGI) 3300052797 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0576 10.44543 357943107 935118 312 24 601 46 Unrestricted 8.61 Metagenome 3300070922 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dead Lake, Alabama, USA - DELA_005-M-20190624-COMP-DNA1 3300070922 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 22131550 67805 53 10 100 11 0.0 Metagenome 3300027451 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G09K3-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300027451 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 10012385 30759 64 6 101 2 SRX1991299 Unrestricted 0.0 Metagenome 3300037464 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Biocrust microbial communities from Canyonlands National Park, Utah, United States - Terrestrial sediment C DOE Joint Genome Institute (JGI) 3300037464 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Biocrust Soil Unclassified biocrust 38.715 -109.6908 1464175431 2380389 613 11 973 22 Unrestricted 18.25 Metagenome 3300030397 *Microbiome Permanent Draft Aquariaum water viral communities from Chicago, USA Aquariaum water viral communities from Chicago, USA - Stingray Touch - STB3 Michigan State University 3300030397 Metagenome Analysis Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Unclassified Aquaculture Unclassified Aquarium water 41.87 -87.61 65074265 145370 139 4 384 4 0.0 Metagenome 3300028514 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 6 Selected contigs with viral hallmark genes 2 Autonomous University of Barcelona 3300028514 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 1492463 2160 0 0 0 0 0.0 Metagenome 3300014700 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00553 Weill Cornell Medical College 3300014700 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.64 -73.9 53103333 82257 29 0 36 0 SRX822520 0.0 Metagenome 3300033821 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-2-X0 DOE Joint Genome Institute (JGI) 3300033821 Metagenome Analysis spades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 188337928 484636 250 2 461 3 SRX8137906, SRX8137905 Unrestricted 0.0 Metagenome 3300049526 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D25_B_7_control DOE Joint Genome Institute (JGI) 3300049526 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 116409087 284811 295 17 629 28 Unrestricted 15.02 Metagenome 7000000269 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159611913 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000269 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 13042066 26410 0 0 0 0 0.0 Metagenome 3300027260 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1563A-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027260 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2103 -123.7517 191053540 417491 131 5 207 15 SRX2753761 Unrestricted 0.0 Metagenome 3300069280 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_073-O-20210623-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069280 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 45.825842 -121.960125 2273146346 5531676 1195 193 2286 350 0.0 Metagenome 3300009522 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG DOE Joint Genome Institute (JGI) 3300009522 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes loy@microbial-ecology.net; Michael.Pester@dsmz.de Alexander Loy; Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.1318 11.881 779948100 1435857 342 2 529 10 Unrestricted 0.0 Metagenome 3300010273 *Microbiome Permanent Draft Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 7_21_20_110_A3 metaG DOE Joint Genome Institute (JGI) 3300010273 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes Steve.Brown@lanzatech.com Steven Brown Yes 30202438 Engineered Bioreactor Anaerobic Semi-continuous Digestate Switchgrass degrading 43.726 -72.1429 246696997 406446 506 2 723 7 SRX3290039 Unrestricted 0.0 Metagenome 3300028017 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4 DOE Joint Genome Institute (JGI) 3300028017 Metagenome Analysis spades v. 3.11.1 Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 59.9992 10.7901 92491056 216474 94 17 176 24 SRX5272044 Unrestricted 7.61 Metagenome 3300034655 *Microbiome Permanent Draft Extreme environments viral communities from various locations Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 494_2800 DOE Joint Genome Institute (JGI) 3300034655 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified filtered seawater 14.8216 -44.9298 92642676 252906 16 3 24 8 SRX7583395 Unrestricted 63.34 Metagenome 2124908035 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3 v3 (version 2) DOE Joint Genome Institute (JGI) 2124908035 Metagenome Analysis Velvet released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 143182006 243857 58 2 91 0 Unrestricted 0.0 Metagenome 3300040383 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_001-M-20140917-COMP-DNA1 Argonne National Laboratory 3300040383 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 5770370 17594 23 2 44 3 ERX2134037 0.0 Metagenome 3300025058 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Sandy's Spring West, USA to study Microbial Dark Matter (Phase II) - SSWTFFsm_matched (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025058 Metagenome Analysis spades v. 3.11.1 Yes Yes brian.hedlund@unlv.edu; rstepanauskas@bigelow.org Brian Hedlund; Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 40.653 -119.3749 7.03 45660241 94522 45 1 70 0 SRX2753914 Unrestricted 0.0 Metagenome 3300034967 *Microbiome Permanent Draft Environmental microbial communities from various locations to study antibiotic resistance - The University of Hong Kong Off-Shore Sediment microbial communities from University of Hong Kong - Off-Shore Sediment University of Hong Kong 3300034967 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Unclassified Sediment Unclassified Off-Shore Sediment 947729 2972 20 1 40 2 SRX371707 0.0 Metagenome 3300005214 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Tolay_CordC_D2 DOE Joint Genome Institute (JGI) 3300005214 Metagenome Analysis Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.15012 -122.438774 693494419 2160266 780 8 1694 7 SRX7144824 Unrestricted 0.0 Metagenome 3300044534 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - DMB5_7SRT_B DOE Joint Genome Institute (JGI) 3300044534 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35894622 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 156195034 218382 159 5 178 6 SRX12654477 Unrestricted 99.98 Metagenome 3300038726 *Microbiome Permanent Draft Seagrass microbial communities from Seahorse Key, Florida, USA Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 University of Florida 3300038726 Metagenome Analysis Megahit v. 1.1.4 released by JGI data releasing policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Plants Unclassified Rhizome Unclassified seagrass rhizome 29.23 -83.735 170740730 200791 43 13 72 11 0.0 Metagenome 3300028366 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #898 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028366 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 128442297 240316 119 3 175 3 SRX2526866 Unrestricted 0.0 Metagenome 3300013838 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01522 Weill Cornell Medical College 3300013838 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.99 11126110 17684 8 0 9 2 SRX823398 0.0 Metagenome 3300049013 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - I5_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049013 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 31223285 87996 119 5 237 9 Unrestricted 0.0 Metagenome 3300002778 *Microbiome Permanent Draft Marine microbial communities from beach sites at Atlantic City and Ocean City , New Jersey Marine microbial communities from beach sites at Atlantic City, NJ 3300002778 Metagenome Analysis released by JGI data releasing policy No Yes cli@emsl.com Quanyi Li No Environmental Aquatic Intertidal zone Marine Beach/Shore Marine 39.350484 -74.442598 0 0 0 0 0 0 0.0 Metagenome 3300002212 *Microbiome Permanent Draft Freshwater microbial community from Sao Paulo Zoo Lake, Brazil Freshwater microbial communities from San Paulo Zoo lake, Brazil - JAN 2013 3300002212 Metagenome Analysis SoapDeNovo released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Lake -23.651072 -46.620675 166914396 488298 11 0 42 7 0.0 Metagenome 3300006038 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 DOE Joint Genome Institute (JGI) 3300006038 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Host-associated Plants Endosphere Roots Unclassified Populus endosphere 35.8443 -83.9607 3467151171 10594642 1817 97 3364 212 SRX2748474 Unrestricted 0.0 Metagenome 7000000603 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 246515023 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000603 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 3098131 6320 0 0 0 0 0.0 Metagenome 3300034047 *Microbiome Permanent Draft Deception Metagenome Glacier sediment microbial communities near Whalers Bay, Deception Island, Antarctica - WBC3 The Brazilian National Council for Scientific and Technological Development (CNPq) 3300034047 Metagenome Analysis IDBA-ud v. 1.1.1 released per Amanda Bendia -- GOLD-1013 No Yes amandagbendia@gmail.com Amanda Bendia No Environmental Aquatic Ice Freshwater Glacier glacier sediment -63.18 -60.67 50874192 67400 29 0 55 0 0.0 Metagenome 3300005889 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_201 DOE Joint Genome Institute (JGI) 3300005889 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 248328605 851011 436 14 826 24 SRX2564882, SRX2581058 Unrestricted 0.0 Metagenome 3300044261 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - WIN11-9-12-19 DOE Joint Genome Institute (JGI) 3300044261 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.4488 -120.5325 454987432 1279390 650 49 1104 90 Restricted 6.41 Metagenome 3300022659 *Microbiome Permanent Draft Subsurface microbial diversity of groundwater of Koyna-Warna region, Deccan traps, Panchgani, Maharashtra, India Groundwater microbial community from Koyna-Warna region, Deccan traps, Gothane, Maharashtra, India - DBW all_kmer Indian Institute of Technology, kharagpur 3300022659 Metagenome Analysis Spades v. 3.10 released by JGI data releasing policy No Yes sarpinaki@gmail.com; sarpinaki@yahoo.com Dr PINAKI SAR; Pinaki Sar No Environmental Aquatic Groundwater Freshwater Aquifer Groundwater 17.299028 73.7385 600849367 1119071 338 22 515 23 0.0 Metagenome 3300060372 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210528_01_13 DOE Joint Genome Institute (JGI) 3300060372 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 777056284 1080056 222 144 290 215 Unrestricted 25.39 Metagenome 3300071051 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_031-M-20200708-COMP-DNA1 3300071051 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 3277942 10823 16 5 38 8 0.0 Metagenome 3300043470 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2018-rr0330 DOE Joint Genome Institute (JGI) 3300043470 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1046545727 1494110 308 41 417 58 Unrestricted 21.07 Metagenome 2077657024 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - OSP_C DOE Joint Genome Institute (JGI) 2077657024 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.7315 -110.711389 27950878 65506 0 0 0 0 Unrestricted 0.0 Metagenome 3300047279 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Yukon River, Alaska, USA - NASQAN2015_015 DOE Joint Genome Institute (JGI) 3300047279 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 61.9336 -162.8829 119591129 315084 232 20 462 20 Unrestricted 27.53 Metagenome 3300005141 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Hot Lake Consortium UCC-R28 (Hybrid Assembly) DOE Joint Genome Institute (JGI) 3300005141 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 95445861 148537 104 2 136 5 SRX2575228, SRX2575229, SRX2995877, SRX2575227, SRX2995878, SRX2575231, SRX2575230 Unrestricted 0.0 Metagenome 3300042331 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME19Jul2018-rd0755 DOE Joint Genome Institute (JGI) 3300042331 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 659589128 1052100 301 24 446 57 Unrestricted 15.32 Metagenome 3300044450 *Microbiome Permanent Draft Simulated microbial communities of Trichodesmium and heterotrophic bacteria from Gulf of Aqaba, Eilat, Israel Simulated microbial communities of Trichodesmium and heterotrophic bacteria from Gulf of Aqaba, Eilat, Israel - Tfinal-3 DOE Joint Genome Institute (JGI) 3300044450 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes yeala.shaked@mail.huji.ac.il Yeala Shaked No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified simulated 29.501 34.917 366644461 450798 162 17 219 30 Unrestricted 326.39 Metagenome 3300070328 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_001-O-20180625-COMP-DNA1 3300070328 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 44352544 121496 66 16 131 23 0.0 Metagenome 3300025586 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025586 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 338938472 595208 230 1 407 1 SRX2839725 Unrestricted 0.0 Metagenome 3300014008 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01316 Weill Cornell Medical College 3300014008 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.8 -73.9 16358811 28085 8 0 14 0 SRX823256 0.0 Metagenome 3300045796 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - S1-R1-B DOE Joint Genome Institute (JGI) 3300045796 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3555 19.0475 327591921 675632 186 35 329 37 Unrestricted 7.18 Metagenome 3300050192 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim3 30-34 DOE Joint Genome Institute (JGI) 3300050192 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.352963 19.04747 770844906 1093068 165 5 256 3 Restricted 17.69 Metagenome 3300041834 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - C_27_wk_5 DOE Joint Genome Institute (JGI) 3300041834 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.8816 -106.962 118497589 376927 240 10 481 17 SRX14809834 Unrestricted 7.08 Metagenome 3300034989 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0819S12 DOE Joint Genome Institute (JGI) 3300034989 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0388 285676464 730323 394 4 718 6 SRX8272969 Unrestricted 6.07 Metagenome 3300031599 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #71 DOE Joint Genome Institute (JGI) 3300031599 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5735 77.9231 630500397 1426182 610 15 1174 30 SRX5650068 Unrestricted 20.47 Metagenome 3300002379 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 19NOV2010 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002379 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 21568956 55376 63 20 120 42 SRX1989278 Unrestricted 0.0 Metagenome 3300022895 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0900-MG DOE Joint Genome Institute (JGI) 3300022895 Metagenome Analysis spades v. 3.11.1 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 299580617 494835 225 3 263 4 SRX4370196 Unrestricted 22.69 Metagenome 3300013431 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100720 University of Pennsylvania 3300013431 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 2619398 6631 22 8 37 9 SRX756130 0.0 Metagenome 3300029635 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Indian Ocean - SMH2 Michigan State University 3300029635 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 1.26600833 103.8333333 38389942 118802 13 1 34 5 0.0 Metagenome 3300069216 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Guanica State Forest and Biosphere Reserve, Puerto Rico - GUAN_048-M-20210920-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069216 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tropical forest Soil Unclassified Terrestrial soil 17.96911 -66.864276 4042626602 9611530 1925 52 3739 92 0.0 Metagenome 3300012245 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100314 University of Pennsylvania 3300012245 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17792125 42045 31 0 33 0 SRX756587 0.0 Metagenome 3300061678 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0582 Microbiome Insights 3300061678 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 356697030 484677 98 5 141 7 0.0 Metagenome 3300005999 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus leukodermatus Group 1a BELIZE.2 DOE Joint Genome Institute (JGI) 3300005999 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 219968387 746049 14 5 25 6 SRX2712476 Unrestricted 0.0 Metagenome 3300042280 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Produce water microbial communities from Denver, Colorado, USA - PW_D278 DOE Joint Genome Institute (JGI) 3300042280 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Wastewater Mine water Industrial wastewater Produced water Produced water 39.7823 -104.9101 203699571 308011 193 0 242 1 Unrestricted 53.55 Metagenome 3300007231 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA DOE Joint Genome Institute (JGI) 3300007231 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 537483925 1313405 403 222 571 385 SRX2751899 Unrestricted 0.0 Metagenome 3300070235 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_004-O-20210106-COMP-DNA1 3300070235 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 435283 1440 1 0 7 0 0.0 Metagenome 3300048076 *Microbiome Permanent Draft Marine and freshwater sediment microbial communities from various locations Freshwater sediment microbial communities from creek in Powell, Michigan, United States - Elm_Creek_HM 13 DOE Joint Genome Institute (JGI) 3300048076 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes smtechtm@mtu.edu Stephen Techtmann No Environmental Aquatic Sediment Freshwater Unclassified Freshwater sediment 46.8344 -87.8956 322052008 958627 477 15 851 41 Unrestricted 5.6 Metagenome 3300049561 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2018 MH01_30cm DOE Joint Genome Institute (JGI) 3300049561 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.358 19.0415 153275247 254876 166 0 291 0 Restricted 0.0 Metagenome 3300070729 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Mountain Lake Biological Station, Virginia, USA - MLBS_064-M-20180612-COMP-DNA1 3300070729 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 15994173 49632 50 2 100 7 0.0 Metagenome 3300011232 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00391 Weill Cornell Medical College 3300011232 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.67 -73.99 48109110 70708 19 0 20 0 SRX822362 0.0 Metagenome 3300020118 *Microbiome Finished Soil bacterial communities from Switchgrass agricultural field in Lux Arbor, Michigan, USA Soil bacterial communities from Switchgrass agricultural field in Lux Arbor, Michigan, USA - site U1, unfertilized Michigan State University 3300020118 Metagenome Analysis Megahit released by JGI data releasing policy Yes Yes aarongaroutte@gmail.com Aaron J. Garoutte No Environmental Terrestrial Unclassified Soil Agricultural land Soil 42.4891 -85.4641 5530921661 9446291 1514 42 2374 78 0.0 Metagenome 3300034899 *Microbiome Permanent Draft Understanding the reciprocal impacts of modified plant cell wall and associated microbiome Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R4 DOE Joint Genome Institute (JGI) 3300034899 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kalluriudayc@ornl.gov Udaya C. Kalluri No Host-associated Plants Stem Phyllosphere Wood/Secondary xylem xylem 32.1348 -81.9657 515579125 567292 106 263 153 139 SRX7584177, SRX7584176 Unrestricted 0.0 Metagenome 3300022746 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG DOE Joint Genome Institute (JGI) 3300022746 Metagenome Analysis spades v. 3.11.1-check Yes Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 321422498 592406 379 24 542 27 SRX4479283 Unrestricted 33.47 Metagenome 3300049234 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB10 DOE Joint Genome Institute (JGI) 3300049234 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 57815071 149422 205 3 374 8 Unrestricted 21.08 Metagenome 3300047312 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 soil DOE Joint Genome Institute (JGI) 3300047312 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121171 -123.269419 5 1035951972 1655887 267 20 494 29 Unrestricted 12.53 Metagenome 3300060884 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Chase Lake Wetlands, North Dakota, USA - WOOD_042-M-20210712-comp-1 DOE Joint Genome Institute (JGI) 3300060884 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 47.129092 -99.245921 2457554932 4227364 802 12 1337 35 Unrestricted 15.82 Metagenome 3300051653 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_CSTR_044 (version 2) DOE Joint Genome Institute (JGI) 3300051653 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 78268343 77737 71 0 61 0 SRX12727507, SRX12727508, SRX12727509 Restricted 0.0 Metagenome 3300026761 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A5-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300026761 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 24453291 79694 100 4 199 6 SRX1991156 Unrestricted 0.0 Metagenome 3300017788 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L (version 2) DOE Joint Genome Institute (JGI) 3300017788 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; sean.crowe@ubc.ca Ramunas Stepanauskas; Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -1.78 29.2 2269178552 4296999 1453 217 2277 343 SRX3571226 Unrestricted 26.26 Metagenome 3300004222 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 117_HOW13 DOE Joint Genome Institute (JGI) 3300004222 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 73410521 146521 55 0 81 0 SRX2721196 Unrestricted 0.0 Metagenome 3300026053 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026053 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.198971 -122.026955 94105789 229589 142 2 245 2 SRX7187019 Unrestricted 0.0 Metagenome 3300020165 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1 DOE Joint Genome Institute (JGI) 3300020165 Metagenome Analysis spades v. 3.10.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling No Environmental Aquatic Epipelagic Marine Unclassified seawater 54.1841 7.9 854504066 1593251 448 177 565 258 SRX4002567 Unrestricted 45.49 Metagenome 3300064756 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 586 in LaCrete, Alberta, Canada - S00JY_0438 Microbiome Insights 3300064756 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 58.01130917 -116.1709417 1704015 2658 9 0 27 1 0.0 Metagenome 3300027142 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepC_0h DOE Joint Genome Institute (JGI) 3300027142 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 146688976 293806 128 7 194 16 SRX5245103 Unrestricted 15.85 Metagenome 3300006097 *Microbiome Permanent Draft Petroleum reservoir microbial communities from Reconcavo Basin, Brazil, analyzing oil degradation Petroleum reservoir microbial communities from Reconcavo Basin, Brazil, analyzing oil degradation - Bahia-well BA-2 Water 3300006097 Metagenome Analysis Spades released by JGI data releasing policy No Yes inatalia.sierra@gmail.com Isabel Natalia Sierra Garcia No Environmental Terrestrial Produced water Oil reservoir Unclassified Petroleum reservoir -12.2 -38.11 134245661 272702 48 6 76 2 0.0 Metagenome 3300037120 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10CB15 DOE Joint Genome Institute (JGI) 3300037120 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 569690371 1461884 688 17 1210 39 SRX8377785 Unrestricted 6.03 Metagenome 3300014886 *Microbiome Permanent Draft Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay15, Core 4569-2, 21-24 cm DOE Joint Genome Institute (JGI) 3300014886 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nd.microbiota@gmail.com Nina Dombrowski Yes 30479325 Environmental Aquatic Hydrothermal vents Marine Sediment marine sediment 27.0154 -111.3798 672781150 1506201 647 0 1132 3 SRX3779978 Unrestricted 34.41 Metagenome 7000000447 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763496533 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000447 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 89701810 174046 0 0 0 0 0.0 Metagenome 3300031419 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLRC.R1 DOE Joint Genome Institute (JGI) 3300031419 Metagenome Analysis spades v. 3.12.0 Yes Yes icelab@berkeley.edu Steven Lindow No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 37.8864 -122.2981 513366010 841219 390 46 651 52 SRX5658976 Unrestricted 125.33 Metagenome 3300049985 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 017-ER18-SC-SDNA (version 2) DOE Joint Genome Institute (JGI) 3300049985 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9215 -106.9526 1483656154 3258234 712 61 1273 91 Unrestricted 0.0 Metagenome 3300009949 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 15 mira Center for Advanced Technologies in Genomics, Sao Paulo University 3300009949 Metagenome Analysis mira released per JGI data release policy No Yes joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 84449027 140672 265 7 349 12 0.0 Metagenome 3300040656 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA FertPrarie soil microbial communities from Boone County, Iowa, USA - PF23-LM-July2012 Iowa State University 3300040656 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land FertPrarie soil 42.01375 -93.783837 1561703 5657 28 1 44 1 0.0 Metagenome 3300023247 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T50 DOE Joint Genome Institute (JGI) 3300023247 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 187435830 294085 103 11 113 11 SRX4415314, SRX7705671 Unrestricted 0.0 Metagenome 3300013897 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100580 University of Pennsylvania 3300013897 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8858942 18365 22 6 38 12 SRX756174 0.0 Metagenome 3300010321 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015 DOE Joint Genome Institute (JGI) 3300010321 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 763988925 1792801 626 17 1137 34 SRX2524978 Unrestricted 0.0 Metagenome 3300050314 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_78 DOE Joint Genome Institute (JGI) 3300050314 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -76.91 160.935 712743748 1054875 300 22 387 32 SRX18235935 Restricted 21.74 Metagenome 3300040348 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 053B_R1 University of Maryland 3300040348 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.98553056 25.65063611 4370217 12036 21 4 31 4 0.0 Metagenome 3300009069 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Hot Lake Consortium UCC-SL28 (version 3) (version 3) DOE Joint Genome Institute (JGI) 3300009069 Metagenome Analysis spades v. 3.6.0 Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hypersaline mat 48.972613 -119.477608 109733430 136428 53 0 59 0 SRX2575235, SRX2575236, SRX2575233, SRX2575234, SRX2575237, SRX2575232 Unrestricted 0.0 Metagenome 3300003664 *Microbiome Permanent Draft Petroleum reservoir microbial communities from Reconcavo Basin, Brazil, analyzing oil degradation Petroleum reservoir microbial communities from Reconcavo Basin, Brazil, analyzing oil degradation - Bahia-well BA- 1 3300003664 Metagenome Analysis CLC released by JGI data releasing policy No Yes inatalia.sierra@gmail.com Isabel Natalia Sierra Garcia No Environmental Terrestrial Oil Oil reservoir Unclassified Petroleum reservoir -12.2 -38.11 87932751 174103 44 0 90 2 0.0 Metagenome 2051774008 *Microbiome Permanent Draft Saline water microbial communities from Great Salt Lake, Utah Saline water microbial communities from Great Salt Lake, Utah, sample from North Arm Rozel Point DOE Joint Genome Institute (JGI) 2051774008 Metagenome Analysis Newbler released based on JGI ITS No Yes bcweimer@ucdavis.edu Bart Weimer, Bart C. Weimer No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline water 41.454358 -112.666397 99427575 247708 0 0 0 0 Unrestricted 0.0 Metagenome 3300029331 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 041_10_31_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029331 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 187077362 242380 174 0 236 0 0.0 Metagenome 3300000066 *Microbiome Permanent Draft Osmoderma hindgut microbial communities from Linden, Michigan, USA, that degrade plant biomass Osmoderma hindgut microbial communities from Linden, Michigan, USA, that degrade plant biomass West Virginia State University 3300000066 Metagenome Analysis released per JGI data release policy No Yes naryal1@wvstateu.edu, naryal101@gmail.com Niranjan Aryal No Host-associated Arthropoda: Insects Hindgut Digestive system Unclassified Osmoderma hindgut 38.5382364 -121.7639012 0 0 0 0 0 0 0.0 Metagenome 3300011586 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00933 Weill Cornell Medical College 3300011586 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.93 26126688 37743 9 0 14 0 SRX822896 0.0 Metagenome 3300031605 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1 DOE Joint Genome Institute (JGI) 3300031605 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified Marine 77.9995 -150.0065 1015000924 2132567 796 141 1221 252 SRX5797841 Unrestricted 13.82 Metagenome 3300009087 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015 DOE Joint Genome Institute (JGI) 3300009087 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wilkins.231@osu.edu, mike.wilkins@colostate.edu Michael Wilkins No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0991 -99.1044 1790728958 3432535 1139 5 1969 7 SRX2753789 Unrestricted 0.0 Metagenome 3300069440 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, Pacific Southwest, CA, USA - SJER_005-M-20170315-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069440 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.10878 -119.73228 85992764 259658 251 18 506 34 0.0 Metagenome 3300070984 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_040-O-20190807-COMP-DNA1 3300070984 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 6208305 20316 67 9 125 20 0.0 Metagenome 3300049659 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_B_0_control DOE Joint Genome Institute (JGI) 3300049659 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 158492837 344942 305 15 613 15 Unrestricted 12.86 Metagenome 3300043054 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8CP15 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043054 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 58875295 138972 85 2 124 3 SRX8379539 Unrestricted 42.09 Metagenome 3300008505 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764224817 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008505 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 88914304 150884 110 0 166 0 0.0 Metagenome 3300000317 *Microbiome Draft Wetland microbial communities from Twitchell Island in the Sacramento Delta Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site L2 Tule DOE Joint Genome Institute (JGI) 3300000317 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes stringe@lbl.gov, sgtringe@lbl.gov Susannah Tringe Yes 25991679 Environmental Aquatic Wetlands Marine Sediment Wetland 38.106796 -121.646457 -1.6 111737537 334653 399 13 772 34 Unrestricted 0.0 Metagenome 3300000946 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0555 DOE Joint Genome Institute (JGI) 3300000946 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -26.91 -21.43 22429581 50031 40 10 85 20 SRX1982948 Unrestricted 0.0 Metagenome 3300024580 *Microbiome Permanent Draft Marine Fish Microbial Metagenomes Abyssal fish gut microbial communities from Mariana Trench, Pacific Ocean - MT200152 University of California, San Diego, Scripps Institute of Oceanography 3300024580 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton No Host-associated Fish Intestine Digestive system Unclassified fish gut 12.73644 144.70035 172715219 206176 47 3 50 3 0.0 Metagenome 3300044790 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - Rondonia_Pasture_3_A1m DOE Joint Genome Institute (JGI) 3300044790 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Pasture Soil Agricultural land Soil -10.204 -62.774 1119744670 2966572 639 5 1172 5 Unrestricted 7.72 Metagenome 3300056770 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FL_03 DOE Joint Genome Institute (JGI) 3300056770 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.407926 -82.180036 39439706 64902 5 3 9 5 Restricted 729.13 Metagenome 3300028871 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_1 DOE Joint Genome Institute (JGI) 3300028871 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 995970895 2214149 407 133 655 212 SRX5355870 Unrestricted 0.0 Metagenome 3300045456 *Microbiome Permanent Draft Groundwater microbial communities from wells in Ash Sharqiyah North Governorate, Oman Groundwater microbial communities from well in Ash Sharqiyah North Governorate, Oman - OM20_BA3A_275 DOE Joint Genome Institute (JGI) 3300045456 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rachel.spietz@montana.edu Rachel Spietz No Environmental Aquatic Groundwater Freshwater Unclassified groundwater 22.8661 58.7105 99820160 152819 98 16 154 14 Unrestricted 473.75 Metagenome 3300006181 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B nyco_MetaG DOE Joint Genome Institute (JGI) 3300006181 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes binskeep@montana.edu William Inskeep, William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.7219 -110.7021 91022159 233388 93 0 146 0 SRX2917363, SRX2917362 Unrestricted 0.0 Metagenome 3300035552 *Microbiome Permanent Draft STAs constructed wetland biome Wetland sediment microbial communities from Everglades, Florida, USA - STA79-Sample07_1 Merge07 University of Florida 3300035552 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy No Yes ng.hanh24@gmail.com Hanh Nguyen No Environmental Aquatic Wetlands Freshwater Sediment sediment 26.38 -80.51 6.6-8.4 78450721 108431 61 3 119 0 0.0 Metagenome 3300021425 *Microbiome Permanent Draft Coastal seawater microbial communities from Pivers Island, North Carolina, United States Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284 DOE Joint Genome Institute (JGI) 3300021425 Metagenome Analysis spades v. 3.11.1-check Yes Yes dana.hunt@duke.edu Dana Hunt No Environmental Aquatic Coastal Marine Unclassified seawater 34.7181 -76.6707 1149591888 2376906 603 200 909 314 SRX4010399 Unrestricted 15.44 Metagenome 3300037396 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037396 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 616458521 1090015 206 6 314 6 SRX4415367, SRX8128071 Unrestricted 0.0 Metagenome 3300001952 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Newport Harbor, Rhode Island, USA - GS008 J. Craig Venter Institute (JCVI) 3300001952 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine 41.485832 -71.35111 85651166 142390 130 0 200 0 0.0 Metagenome 7000000115 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763860675 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000115 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 149972139 284599 0 0 0 0 0.0 Metagenome 3300000785 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion v2 (version 2) DOE Joint Genome Institute (JGI) 3300000785 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.0412 -89.6864 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300007628 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_D1_MG DOE Joint Genome Institute (JGI) 3300007628 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4961 -122.1331 652101080 1261094 731 14 1188 20 SRX2523448 Unrestricted 0.0 Metagenome 3300049895 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA1 DOE Joint Genome Institute (JGI) 3300049895 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 253993843 652252 342 0 579 5 Restricted 6.49 Metagenome 3300031973 *Microbiome Finished The variation of viral communities during algal boom from the coastal of Qingdao, China Marine viral communities from the Yellow sea, Qingdao, China - XG0614 Beijing Novogene Bioinformatics Technology Co., Ltd 3300031973 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes foodyqw_12@163.com Yang Qingwei No Environmental Aquatic Coastal Marine Unclassified marine 36.0767 120.3087 182965333 331008 47 2 69 4 0.0 Metagenome 3300042635 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Globitermes sulphureus from Bubeng, China - Glo450 Eurofins MWG Operon 3300042635 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 21.96151 101.20104 961813890 980039 87 11 137 12 0.0 Metagenome 7000000168 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764042746 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000168 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 33826980 63466 0 0 0 0 0.0 Metagenome 3300069602 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_005-M-20160720-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069602 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 15869495 55269 50 11 96 9 0.0 Metagenome 3300070680 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_002-O-20200915-COMP-DNA1 3300070680 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 18574793 59200 58 10 104 14 0.0 Metagenome 3300026546 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in the Atlantic and Pacific Ocean Deep-sea worm associated microbial mat communities from Axial Seamount, Juan de Fuca Ridge, Pacific Ocean - Axial_Mat DOE Joint Genome Institute (JGI) 3300026546 Metagenome Analysis spades v. 3.11.1 Yes Yes pgirguis@oeb.harvard.edu Peter Girguis No Environmental Aquatic Oceanic Marine Microbial mats deep-sea worm associated microbial mat 45.9333 -130.0138 1068690604 1606672 459 11 672 14 SRX4804628 Unrestricted 13.76 Metagenome 3300026619 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_10_16 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026619 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 10022717 18682 15 0 39 0 SRX2924397 Unrestricted 0.0 Metagenome 3300047194 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2013 ID1-MC_7cm DOE Joint Genome Institute (JGI) 3300047194 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.2149 19.0279 88050098 165131 80 0 154 0 Restricted 61.28 Metagenome 3300013987 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01035 Weill Cornell Medical College 3300013987 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.67 -73.86 12507709 18690 10 0 22 1 SRX822997 0.0 Metagenome 3300005573 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - OP-RAMG-01 (SPADES assembly) (version 2) DOE Joint Genome Institute (JGI) 3300005573 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, rmkelly@ncsu.edu; twoyke@lbl.gov Natasha Ivanova, Robert Kelly; Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.611006 -110.440182 1324228739 1898800 1165 49 1498 64 SRX2554840, SRX2554839 Unrestricted 0.0 Metagenome 3300006252 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 158883629 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006252 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 43676476 50401 54 0 66 0 0.0 Metagenome 3300026290 *Microbiome Permanent Draft Anaerobic biogas reactor microbial communites from Washington, USA Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1 time_0 SIP DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026290 Metagenome Analysis spades v. 3.11.1 Yes Yes dacb@uw.edu David Beck Yes 28895946 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic biogas reactor 47.6525 -122.3049 631676668 1059256 682 5 1040 6 SRX2339320 Unrestricted 0.0 Metagenome 3300028478 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E16 DOE Joint Genome Institute (JGI) 3300028478 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Elk feces 38.04 -122.5 163031020 279638 135 36 215 36 SRX5092970, SRX5092969 Unrestricted 0.0 Metagenome 3300013969 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - seawater enrichment SCG69 University of British Columbia 3300013969 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 491798 1248 0 0 0 0 SRX143178 0.0 Metagenome 3300017743 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 25 SPOT_SRF_2011-08-17 DOE Joint Genome Institute (JGI) 3300017743 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 327526998 768679 48 20 92 41 SRX7207389, SRX7207388 Unrestricted 0.0 Metagenome 3300048536 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_160413.NP1 DOE Joint Genome Institute (JGI) 3300048536 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 976993615 2151072 509 87 815 166 Unrestricted 15.07 Metagenome 3300037575 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from Cariaco Basin, Caribbean Sea - 26_WHOI_OMZ (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037575 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 10.847 -65.114 162019544 267279 70 0 84 0 SRX3197409, SRX3197410 Unrestricted 0.0 Metagenome 3300034351 *Microbiome Permanent Draft Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China - KO3 Sun Yat-Sen University 3300034351 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy No Yes yuxiaoli92@163.com Xiaoli Yu No Environmental Aquatic Intertidal zone Marine Mangrove sediment mangrove sediment 23.45 116.43 655009274 1464969 437 4 922 11 0.0 Metagenome 3300051386 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - HDCcR1D-14 DOE Joint Genome Institute (JGI) 3300051386 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 1080220335 1904306 968 72 1499 101 Unrestricted 15.99 Metagenome 3300017951 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300017951 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1675437612 3522484 1573 100 2568 212 SRX4071964 Unrestricted 15.01 Metagenome 3300036494 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T50 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036494 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 80071298 143865 101 0 195 0 SRX4415307, SRX7705662 Unrestricted 0.0 Metagenome 3300025232 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0103 (SPAdes) DOE Joint Genome Institute (JGI) 3300025232 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 21.51 -23.45 114459316 220417 122 2 205 2 SRX1983459 Unrestricted 0.0 Metagenome 2037747003 *Microbiome Permanent Draft Coalbed water microbial communities from New Mexico, USA Coalbed microbial communities from New Mexico, USA - water sample 454AllContigs2fna Virginia Polytechnic Institute and State University 2037747003 Metagenome Analysis released per JGI data release policy No Yes biswarup@vt.edu Biswarup Mukhopadhyay No Environmental Aquatic Groundwater Freshwater Unclassified Coalbed water 36.728056 -108.220833 14876031 24003 29 0 38 0 0.0 Metagenome 3300003960 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Enrichment cultures from Harmful Algal Blooms in Lake Erie, HABS-00-39859 University of Michigan 3300003960 Metagenome Analysis IDBA-UD v1.1.1 released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lentic Freshwater Unclassified Freshwater -77.611214 163.119356 32740868 39100 25 0 29 0 0.0 Metagenome 3300049746 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB5 DOE Joint Genome Institute (JGI) 3300049746 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 253105554 713868 476 3 933 6 Unrestricted 10.0 Metagenome 3300001519 *Microbiome Permanent Draft Sheep rumen microbial communities from New Zealand from high and low methane emitting sheep Sheep rumen microbial communities from New Zealand - Rank39_high DOE Joint Genome Institute (JGI) 3300001519 Metagenome Analysis Velvet Released because these are assemblies from SRA data No Yes janine.kamke@agresearch.co.nz, janine.kamke@uni-wuerzburg.de Janine Kamke No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen -40.352 175.608 148937569 322915 598 39 820 61 0.0 Metagenome 3300043717 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - II_P72_A150 DOE Joint Genome Institute (JGI) 3300043717 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.169 -62.8319 841453741 2273529 657 13 1160 21 Unrestricted 7.48 Metagenome 3300009360 *Microbiome Permanent Draft Syntrophic microbial communities from biogas reactors in Seattle, WA Syntrophic microbial communities from biogas reactors in Seattle, WA - R1.C12.But.B IBDA Molecular Research LP (MR DNA) 3300009360 Metagenome Analysis IBDA-UD v 1.1 released per JGI data release policy Yes Yes ziels@uw.edu Ryan Ziels No Engineered Wastewater Unclassified Anaerobic digestor Unclassified anaerobic wastewater sludge 47.652555 -122.304991 308183259 486743 171 0 266 0 0.0 Metagenome 3300030225 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_3 DOE Joint Genome Institute (JGI) 3300030225 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 1062737523 1963937 231 18 311 32 SRX5799208 Unrestricted 12.68 Metagenome 3300047178 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Frasne, France - Sphagnum fallax 11C_SF_FR DOE Joint Genome Institute (JGI) 3300047178 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 1326712958 2486467 587 131 978 192 SRX14794099 Unrestricted 9.08 Metagenome 3300045220 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_5_A DOE Joint Genome Institute (JGI) 3300045220 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 204139418 231436 131 1 124 2 Unrestricted 110.28 Metagenome 3300012485 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.7.old.040610 DOE Joint Genome Institute (JGI) 3300012485 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 91087592 247269 227 17 486 34 SRX3527424 Unrestricted 0.0 Metagenome 3300055073 *Microbiome Permanent Draft Soil microbial communities from various environments and locations in the USA Soil microbial communities from grassland in Ellensburg, Washington, USA - FTA3_BTM DOE Joint Genome Institute (JGI) 3300055073 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nancy.hess@pnnl.gov Nancy Hess No Environmental Terrestrial Grasslands Soil Bulk soil Soil 46.9216 -120.6586 1741165296 3024244 568 5 1036 4 Unrestricted 15.75 Metagenome 3300024516 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from Mariana Trench to uncover new lineages of life (NeLLi) - CR02 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300024516 Metagenome Analysis spades v. 3.11.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Ocean trench Marine Sediment Deep subsurface 12.6311 144.7214 1115860739 2618447 785 8 1362 17 SRX4807402 Unrestricted 0.0 Metagenome 3300065586 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 781 in Three Hills, Alberta, Canada - S00JY_0635 Microbiome Insights 3300065586 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.46151696 -113.1723542 479629201 660896 126 0 194 1 0.0 Metagenome 3300001646 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF042 DOE Joint Genome Institute (JGI) 3300001646 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 7969357 26670 43 1 54 6 SRX2014385 Unrestricted 0.0 Metagenome 3300020372 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000787 (ERX556133-ERR599090) CEA Genoscope 3300020372 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -62.1363 -49.3331 585733328 1357260 171 86 404 136 0.0 Metagenome 3300038546 *Microbiome Permanent Draft Oyster larvae and tank water microbial communities from oyster tank in Dauphin Island, Alabama, USA Water microbial communities from oyster tank in Dauphin Island, Alabama, USA - 102W U.S. Food and Drug Administration 3300038546 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Aquaculture Unclassified Water 30.25 -88.11 21545550 39780 34 0 61 0 0.0 Metagenome 3300011510 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00331 Weill Cornell Medical College 3300011510 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.98 18784356 30503 9 0 12 0 SRX822304 0.0 Metagenome 3300019369 *Microbiome Permanent Draft Mouse fecal microbial communities from Athens, Georgia, USA Mouse fecal microbial communities from Athens, Georgia, USA - 8J1B Georgia Genomics Facility 3300019369 Metagenome Analysis megahit released by JGI data releasing policy No Yes ptu@live.unc.edu Pengcheng Tu No Host-associated Mammals Large intestine Digestive system Fecal mouse fecal 33.9519 -83.3576 40171738 59507 78 0 108 0 0.0 Metagenome 3300001358 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A30-65cm)- 6 month illumina University of Tennessee 3300001358 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 31743305 149744 94 2 133 3 0.0 Metagenome 3300042440 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D140_2 DOE Joint Genome Institute (JGI) 3300042440 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 148053615 212704 87 7 133 17 Unrestricted 70.25 Metagenome 3300045900 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from the Seven Mile Hole Area, Yellowstone National Park, WY, United States - MSUNE_MH_02 University of Wisconsin, Madison 3300045900 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.75386 -110.40376 639871384 1341487 340 11 728 10 0.0 Metagenome 3300038619 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P4_D2 DOE Joint Genome Institute (JGI) 3300038619 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 1538001444 2241660 412 40 598 51 SRX9472087 Unrestricted 15.46 Metagenome 3300013623 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100483 University of Pennsylvania 3300013623 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4632109 13321 10 0 18 0 SRX756515 0.0 Metagenome 3300004284 *Microbiome Permanent Draft Sulfidic tide pool sediment microbial communities from Sippewissett Salt Marsh, Massachusetts, USA Achromatium Mini-Metagenome 2 University of North Carolina, Chapel Hill 3300004284 Metagenome Analysis SMRT Analysis released per JGI data release policy No Yes era23@cornell.edu Esther Angert No Environmental Aquatic Intertidal zone Marine Sediment Sulfidic tide pool sediment 41.575804 -70.639768 8.2 607738 689 0 0 0 0 0.0 Metagenome 3300003748 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus makropetalos BAHAMAS.2 DOE Joint Genome Institute (JGI) 3300003748 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 312915814 788964 8 1 6 11 SRX3299581 Unrestricted 0.0 Metagenome 3300010366 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama - MetaG Plot_24 DOE Joint Genome Institute (JGI) 3300010366 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes cpan@ou.edu Chongle Pan No Environmental Terrestrial Tropical forest Soil Bulk soil Tropical forest soil 9.1086 -79.8436 5407103522 11792652 2234 116 4070 192 SRX2525682 Unrestricted 0.0 Metagenome 3300049277 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA30 DOE Joint Genome Institute (JGI) 3300049277 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 411051750 972396 375 4 680 1 Unrestricted 7.56 Metagenome 3300004819 *Microbiome Permanent Draft Hypersaline lake viral communities from Bras del Port, Santa Pola, Alicante, Spain Hypersaline lake viral communities from Bras del Port, Santa Pola, Alicante, Spain - HQ1 dirigido Enero 2015 University of Alicante 3300004819 Metagenome Analysis IDBA 1.1.1 Pre_correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline lake 38.19317 -0.59268 7 7447736 25351 0 0 4 0 0.0 Metagenome 3300036478 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C2-7B DOE Joint Genome Institute (JGI) 3300036478 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 93745940 285822 187 4 360 6 SRX8816842 Unrestricted 4.82 Metagenome 3300027508 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepA_8h DOE Joint Genome Institute (JGI) 3300027508 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 250841256 607090 262 29 422 46 SRX5245172 Unrestricted 11.75 Metagenome 3300028494 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen10, Rep 2 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028494 Metagenome Analysis spades v. 3.11.1 No Yes xpeng@seoe.sc.edu; momalley@engineering.ucsb.edu Xuefeng (Nick) Peng; Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 21720147 23612 28 0 25 0 SRX5645628 Unrestricted 0.0 Metagenome 3300001193 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from University of Liverpool Illum_50ngNex_IDBA-UD University of Liverpool 3300001193 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 24289795 31249 93 0 124 0 0.0 Metagenome 3300070878 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_043-M-20180724-COMP-DNA1 Battelle Memorial Institute 3300070878 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.131002 -99.242763 6.45-8 540175 1878 11 0 19 1 0.0 Metagenome 3300032057 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS60 DOE Joint Genome Institute (JGI) 3300032057 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 354873169 711546 282 0 407 0 SRX6411890 Unrestricted 120.93 Metagenome 3300014810 *Microbiome Permanent Draft Wastewater microbial communities from municipal sewage treatment plants in Nanjing, China Wastewater microbial communities from municipal sewage treatment plant in Nanjing, China - WX_IW_meta Nanjing University 3300014810 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 127804982 292073 67 14 114 12 SRX425461 0.0 Metagenome 3300028273 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 51D DOE Joint Genome Institute (JGI) 3300028273 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 215974802 490995 216 33 299 55 SRX5171862 Unrestricted 16.04 Metagenome 3300030739 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3 DOE Joint Genome Institute (JGI) 3300030739 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 2100041290 4200912 465 36 713 71 SRX5357866 Unrestricted 14.43 Metagenome 3300057271 *Microbiome Permanent Draft Sediment microbial communities from coastal wetlands in Copper River Delta, Alaska, USA Sediment microbial communities from freshwater pond in Copper River Delta, Alaska, USA - E.coli-high-clay DOE Joint Genome Institute (JGI) 3300057271 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rcolwell@coas.oregonstate.edu Frederick Colwell No Environmental Aquatic Pond Freshwater Sediment Sediment 60.52 -145.601 293182 633 3 0 3 0 Unrestricted 3862.05 Metagenome 3300005452 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG DOE Joint Genome Institute (JGI) 3300005452 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes dab14@psu.edu Donald A. Bryant, Donald Bryant Yes 27379049 Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 371857061 1016263 384 0 643 4 SRX2740067 Unrestricted 0.0 Metagenome 3300043557 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield ecozone, Canada - Lake 06-294 Genome Quebec 3300043557 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 55.892985 -98.996064 1110892489 2678921 425 146 755 262 0.0 Metagenome 3300066761 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from Gulf of California, Mexico - CTD-FK190211-18-72m-0.65 DOE Joint Genome Institute (JGI) 3300066761 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 27.01072 -111.40693 22224123 43233 28 16 51 19 Restricted 0.0 Metagenome 3300025490 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Dec_QV11A (SPAdes) DOE Joint Genome Institute (JGI) 3300025490 Metagenome Analysis spades v. 3.11.1 Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 19037179 24722 24 0 25 1 SRX3322657 Unrestricted 0.0 Metagenome 3300019768 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_3_MG DOE Joint Genome Institute (JGI) 3300019768 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Microbial mats Freshwater microbial mat 38.7906 -75.1644 352043296 706096 757 49 1187 74 SRX3982602 Unrestricted 8.0 Metagenome 3300025925 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025925 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 3410523046 7835490 1253 100 2433 162 SRX2740287 Unrestricted 0.0 Metagenome 3300001759 *Microbiome Permanent Draft Wastewater microbial communities from Belvaux, Luxembourg Wastewater microbial communities from Belvaux, Luxembourg - M44 3300001759 Metagenome Analysis CLC genomics Workbench released by JGI data releasing policy Yes Yes goux@lippmann.lu, xavier.goux@list.lu Xavier Goux No Engineered Bioreactor Sludge Anaerobic Unclassified Wastewater 49.506095 5.943536 27596177 32759 8 0 16 0 0.0 Metagenome 3300002454 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Tailings pond microbial communities from Northern Alberta - Syncrude Mildred Lake Settling Basin McGill University 3300002454 Metagenome Analysis released per JGI data release policy No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 57.01116 -111.6 8.69 0 0 0 0 0 0 0.0 Metagenome 3300040404 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_037-O-20160810-COMP-DNA1 Battelle Memorial Institute 3300040404 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 5352048 16064 29 3 52 7 0.0 Metagenome 3300020219 *Microbiome Permanent Draft Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP7.G1 DOE Joint Genome Institute (JGI) 3300020219 Metagenome Analysis spades v. 3.10.1 Yes Yes dysumner@ucdavis.edu Dawn Sumner No Environmental Aquatic Lake Freshwater Microbial mats freshwater microbial mat -77.5281 161.59 1398135433 2443074 633 55 987 73 SRX3539171 Unrestricted 20.39 Metagenome 3300040942 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P11_D8 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300040942 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 693678108 968430 210 5 298 9 SRX9635304, SRX9635303 Unrestricted 0.0 Metagenome 3300002829 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A4a-10 DOE Joint Genome Institute (JGI) 3300002829 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 361419 1260 18 0 37 0 SRX1991114 Unrestricted 0.0 Metagenome 3300028625 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_RA_Gln DOE Joint Genome Institute (JGI) 3300028625 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 232516957 377056 169 0 231 0 SRX5281948 Unrestricted 31.37 Metagenome 3300025205 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP1787 (SPAdes) DOE Joint Genome Institute (JGI) 3300025205 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 9.22 -163.53 81978214 146868 78 19 126 25 SRX1982299 Unrestricted 0.0 Metagenome 3300044577 *Microbiome Permanent Draft Marine microbial communities from various hydrothermal vent chimneys in Pacific Ocean Marine hydrothermal vent mat microbial communities from Ochre Fields, Axial Seamount, Pacific Ocean - S1 Western Washington University 3300044577 Metagenome Analysis MegaHIT v. 1.2.9 released by Laura A Murray No Yes lmurray0918@gmail.com Laura Murray No Environmental Aquatic Hydrothermal vents Marine Microbial mats Marine hydrothermal vent microbial mat 45.93 -129.98 375798447 908937 357 12 595 16 0.0 Metagenome 3300015157 *Microbiome Permanent Draft Human fecal microbial communities from infant diaper, Dhaka, Bangladesh Human fecal microbial communities from infant diaper, Dhaka, Bangladesh - DMDT001A megaHIT Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300015157 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes dhtaft@ucdavis.edu Diana Taft No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant feces 23.8103 90.4125 63088512 100098 64 2 106 9 0.0 Metagenome 3300011750 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00884 Weill Cornell Medical College 3300011750 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.72 -73.85 24410124 37099 18 0 30 0 SRX822849 0.0 Metagenome 3300032292 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains Ecozone, Canada - Lake 08-168 Genome Quebec 3300032292 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.467555 -78.695518 866721075 1834162 488 144 848 302 0.0 Metagenome 3300019715 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BRT_2-3_MG DOE Joint Genome Institute (JGI) 3300019715 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 106166789 266635 241 20 476 25 SRX3982609 Unrestricted 3.46 Metagenome 3300012820 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched pill bug-associated microbial communities from UW Madison campus, WI, USA - HID1972K_E6 MG DOE Joint Genome Institute (JGI) 3300012820 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 78519083 111273 78 1 128 2 SRX3564645 Unrestricted 0.0 Metagenome 3300013762 *Microbiome Permanent Draft Beach sand microbial communities from Municipal Pensacola Beach, Florida Beach sand microbial communities from Municipal Pensacola Beach, Florida - OS-J598 Georgia Institute of Technology 3300013762 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Terrestrial Sand Soil Unclassified Beach sand 30.3262 -87.1745 226239734 731851 48 16 106 25 SRX697337, SRX696255 0.0 Metagenome 3300070549 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_006-M-20180620-COMP-DNA1 Battelle Memorial Institute 3300070549 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 32.898842 -87.446131 5.46-5.85 9528053 29741 55 9 104 14 0.0 Metagenome 3300013340 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01169 Weill Cornell Medical College 3300013340 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.68 -73.88 18051655 31833 12 0 21 0 SRX823124 0.0 Metagenome 3300014255 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleC_D2 DOE Joint Genome Institute (JGI) 3300014255 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.052509 -121.76873 228486620 550189 308 3 683 6 SRX7182414 Unrestricted 0.0 Metagenome 3300022526 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 10-14 DOE Joint Genome Institute (JGI) 3300022526 Metagenome Analysis spades v. 3.11.1-check Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0469 167795401 375155 144 16 254 21 SRX4415318, SRX8127806 Unrestricted 0.0 Metagenome 3300070471 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_023-O-20160823-COMP-DNA1 Battelle Memorial Institute 3300070471 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 29.722597 -81.985527 3.57-4.36 259018974 642986 191 8 363 28 0.0 Metagenome 3300027791 *Microbiome Permanent Draft Marine microbial communities from western Arctic Ocean Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027791 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh Yes 30271971 Environmental Aquatic Oceanic Marine Unclassified Marine 77.0991 -150.2252 944565677 1815474 306 165 429 266 SRX2997471 Unrestricted 0.0 Metagenome 3300048442 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_120516.NP2 DOE Joint Genome Institute (JGI) 3300048442 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 691678443 1394120 426 107 610 204 Unrestricted 18.01 Metagenome 3300002530 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_3 DOE Joint Genome Institute (JGI) 3300002530 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.534762 -107.782602 412185086 995491 939 37 1720 52 SRX1991819 Unrestricted 0.0 Metagenome 3300048904 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled DOE Joint Genome Institute (JGI) 3300048904 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Rhizoplane Roots Unclassified Rhizoplane soil 42.40581 -85.40228 1702139601 2886115 646 108 1018 142 Unrestricted 15.3 Metagenome 3300030673 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E2_4 DOE Joint Genome Institute (JGI) 3300030673 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 633113202 1566745 556 53 864 78 SRX5357446 Unrestricted 10.87 Metagenome 3300070616 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_045-O-20170711-COMP-DNA1 3300070616 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 1034964 3598 30 2 48 3 0.0 Metagenome 3300029216 *Microbiome Permanent Draft North Pond 2017 Crustal fluid microbial communities from North Pond, Mid-Atlantic Ridge, Atlantic Ocean - 1383CD 2017 Marine Biological Laboratory 3300029216 Metagenome Analysis IDBA-UD v. 1.1.2 released by JGI data releasing policy No Yes lmseyler@gmail.com Lauren Seyler No Environmental Aquatic Oceanic Marine Crustal Fluids Oceanic crustal fluids 22.75 -46.083 65886664 75155 43 1 62 2 0.0 Metagenome 3300069635 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_006-O-20140707-COMP-DNA1 re-annotation Argonne National Laboratory 3300069635 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 2835413 9110 48 8 93 16 ERX2134058 0.0 Metagenome 3300050566 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_RHK1_4_to_SEK1 DOE Joint Genome Institute (JGI) 3300050566 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.244 301045756 541411 246 93 373 129 Unrestricted 22.02 Metagenome 3300000652 *Microbiome Draft Arabidopsis rhizosphere microbial communities from the University of North Carolina Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Col-0 young rhizosphere DNA DOE Joint Genome Institute (JGI) 3300000652 Metagenome Analysis released based on JGI ITS Yes Yes sgtringe@lbl.gov, sgtringe@lbl.gov; dangl@email.unc.edu Susannah Tringe, Susannah Tringe; Jeff Dangl Yes 22859206 Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9 -79.05 72903435 220291 425 22 752 35 Unrestricted 0.0 Metagenome 3300003349 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM DOE Joint Genome Institute (JGI) 3300003349 Metagenome Analysis revert back to private per Christa Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 45294543 121573 222 20 371 41 SRX2574178 Unrestricted 0.0 Metagenome 3300042602 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Mastotermes darwinensis from BAM Federal Institute for Materials Research and Testing, Berlin, Germany - Md513 Eurofins MWG Operon 3300042602 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 52.443245 13.287523 1340259218 1314868 137 29 157 44 0.0 Metagenome 3300013275 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100369 University of Pennsylvania 3300013275 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 28226099 65992 73 11 153 26 SRX756288 0.0 Metagenome 3300020690 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 27AUG2007 hypolimnion DOE Joint Genome Institute (JGI) 3300020690 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 59027541 128624 89 14 150 18 Unrestricted 0.0 Metagenome 3300059587 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Colorado, USA - BV_H3_S1 DOE Joint Genome Institute (JGI) 3300059587 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 40.983583 -106.630972 52218 98 0 1 0 0 Unrestricted 45247.43 Metagenome 3300045604 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_2_A DOE Joint Genome Institute (JGI) 3300045604 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 158204697 184081 100 2 104 1 Unrestricted 152.43 Metagenome 3300012539 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100389 University of Pennsylvania 3300012539 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 5274957 9592 7 5 13 5 SRX756268 0.0 Metagenome 3300043385 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 206-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043385 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.8568 -107.0921 654155306 1613282 378 37 686 65 Unrestricted 7.83 Metagenome 3300036871 *Microbiome Permanent Draft Soil microbial communities from a coastal freshwater wetland in North Carolina, United States Soil microbial communities from coastal freshwater wetland in North Carolina, United States - 6NFC DOE Joint Genome Institute (JGI) 3300036871 Metagenome Analysis metaspades v. 3.13.0 Yes Yes peraltaa@ecu.edu Ariane Peralta No Environmental Terrestrial Wetlands Soil Unclassified soil 35.8956 -76.1655 652242702 1100738 235 6 462 8 SRX8387804 Unrestricted 13.28 Metagenome 3300011522 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00665 Weill Cornell Medical College 3300011522 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.8 -73.94 28237850 32189 8 0 12 0 SRX822632 0.0 Metagenome 3300028516 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 14 Selected contigs with viral hallmark genes 2 Autonomous University of Barcelona 3300028516 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 1819158 2617 0 0 0 0 0.0 Metagenome 3300017517 *Microbiome Permanent Draft Bras del Port Mayo 2015 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CR41 May 2015 University of Valencia 3300017517 Metagenome Analysis idba.1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Non-marine hypersaline water 38.1922 -0.5918 57201500 174357 2 0 4 0 0.0 Metagenome 3300049524 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H21_B_7_control DOE Joint Genome Institute (JGI) 3300049524 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 94489889 228116 204 12 428 21 Unrestricted 29.71 Metagenome 3300020008 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - H1m2 DOE Joint Genome Institute (JGI) 3300020008 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9765 -107.0043 65088572 164792 218 10 427 15 SRX3959619, SRX3959620 Unrestricted 0.0 Metagenome 3300028649 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E2_2 DOE Joint Genome Institute (JGI) 3300028649 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 577268008 1557184 832 120 1558 196 SRX5281172 Unrestricted 0.0 Metagenome 3300025069 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-38 (SPAdes) DOE Joint Genome Institute (JGI) 3300025069 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 49.9853 -145.0838 157877014 401725 16 2 20 7 Unrestricted 0.0 Metagenome 3300002845 *Microbiome Permanent Draft Stormwater retention pond microbial communities from Williamsburg, VA Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Crim Dell 3300002845 Metagenome Analysis Newbler released per JGI data releasing policy No Yes kewilliamson@wm.edu Kurt Williamson No Environmental Aquatic Pond Freshwater Unclassified Stormwater retention pond 37.270661 -76.7142 895106 1791 0 0 0 0 0.0 Metagenome 3300042214 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D118_3 DOE Joint Genome Institute (JGI) 3300042214 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 148541247 227076 114 5 163 17 Unrestricted 86.82 Metagenome 3300022409 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1BM3 JM36 AGRF 3300022409 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 51188520 84106 35 3 44 2 0.0 Metagenome 3300045778 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - G1-R3-B DOE Joint Genome Institute (JGI) 3300045778 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.048 464502494 1023978 188 40 300 57 Unrestricted 9.05 Metagenome 3300025949 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025949 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 4154183191 8903445 1577 171 2700 272 SRX2783763 Unrestricted 0.0 Metagenome 3300045212 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_4_F DOE Joint Genome Institute (JGI) 3300045212 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 199186070 228038 113 1 130 2 Unrestricted 153.68 Metagenome 3300042889 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME07May2001-rd0597 DOE Joint Genome Institute (JGI) 3300042889 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 609362848 972423 178 20 218 19 Unrestricted 25.94 Metagenome 3300037466 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 DOE Joint Genome Institute (JGI) 3300037466 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 37.9315 -122.0212 2397078182 3910880 698 114 1038 179 Unrestricted 20.57 Metagenome 3300031795 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19 DOE Joint Genome Institute (JGI) 3300031795 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1148718420 2776155 405 22 639 40 SRX5820238 Unrestricted 11.59 Metagenome 3300022668 *Microbiome Permanent Draft Carpinteria Salt Marsh Metagenomes 2014 to 2017 Sediment microbial communities from marsh channel in Carpinteria, CA, United States - HS B University of California, Irvine 3300022668 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Aquatic Intertidal zone Marine Sediment Sediment 34.401 -119.534 57276738 63091 17 3 23 3 0.0 Metagenome 3300026351 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-B DOE Joint Genome Institute (JGI) 3300026351 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 138613483 359685 218 12 391 24 SRX4803702 Unrestricted 9.65 Metagenome 3300036364 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C3-3B DOE Joint Genome Institute (JGI) 3300036364 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 49674644 157770 142 8 244 5 SRX8817154 Unrestricted 4.36 Metagenome 3300026724 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN410 (SPAdes) DOE Joint Genome Institute (JGI) 3300026724 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Soil 44.20517707 -122.1284473 18195758 60728 77 5 136 5 SRX3311796 Unrestricted 0.0 Metagenome 3300023253 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1398 DOE Joint Genome Institute (JGI) 3300023253 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 167955693 310320 166 2 271 4 SRX4397503 Unrestricted 13.21 Metagenome 3300014822 *Microbiome Permanent Draft Bacterial communities from hot springs in Japan Sediment microbial communities from hot springs in Jinata Onsen, Shikinejima, Japan - Pool 1 California Institute of Technology 3300014822 Metagenome Analysis MegaHit v. 1.02 released by JGI data releasing policy Yes Yes LMWARD@post.harvard.edu Lewis Ward No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 34.326111 139.21 5.8 319205967 526669 274 22 463 39 0.0 Metagenome 7000000453 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human Vaginal introitus microbial communities from NIH, USA - visit 2, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000453 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Introitus Human 39.0042816 -77.1012173 2288772 4971 0 0 0 0 0.0 Metagenome 3300008284 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 765560005 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008284 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 7279607 14361 14 0 21 0 SRX024094 0.0 Metagenome 3300042141 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lake Yojoa, Honduras - Yojoa_06_2019_Q_epi (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300042141 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Lake Freshwater Unclassified Freshwater 14.8889 -87.9718 913722800 1781198 442 71 657 118 Unrestricted 19.05 Metagenome 3300003325 *Microbiome Permanent Draft Freshwater sediment microbial communities from Lake Washington, Seattle, USA, for methane and nitrogen cycles Freshwater sediment microbial communities from Lake Washington, Seattle, for methane and nitrogen Cycles - SIP 13Cmethane anaerobic no nitrate v2 (version 2) DOE Joint Genome Institute (JGI) 3300003325 Metagenome Analysis Newbler released based on JGI ITS No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova Yes 23638358 Environmental Aquatic Lentic Freshwater Sediment Freshwater sediment 47.07 -122.27889 5037138 5165 3 0 3 0 Unrestricted 0.0 Metagenome 3300042867 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME29May2014-rr0350 DOE Joint Genome Institute (JGI) 3300042867 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 774129062 1165107 243 39 354 43 Unrestricted 18.24 Metagenome 3300001832 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM6, ROCA_DNA131_0.2um_27b 3300001832 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River plume Marine Plankton Marine plankton 12.4145 -52.2197 54110528 127053 31 3 54 4 0.0 Metagenome 3300005331 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG DOE Joint Genome Institute (JGI) 3300005331 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 5067408604 13384663 3544 216 5843 392 SRX2740287 Unrestricted 0.0 Metagenome 3300031846 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19 DOE Joint Genome Institute (JGI) 3300031846 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1525161117 3832252 448 5 747 7 SRX5817749 Unrestricted 12.77 Metagenome 3300012128 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #293 DOE Joint Genome Institute (JGI) 3300012128 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 107097935 228254 140 24 229 48 SRX3241969 Unrestricted 0.0 Metagenome 3300024494 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Yuk_RepB_8h DOE Joint Genome Institute (JGI) 3300024494 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 123541647 272467 147 6 229 11 SRX4547477 Unrestricted 16.03 Metagenome 3300002796 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G09K1-12 DOE Joint Genome Institute (JGI) 3300002796 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 38625 123 16 1 32 1 SRX1991294 Unrestricted 0.0 Metagenome 3300025087 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection A1 (SPAdes) DOE Joint Genome Institute (JGI) 3300025087 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.53 -107.78 232972624 465211 237 3 399 13 SRX1990959 Unrestricted 0.0 Metagenome 3300070525 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Arizona, USA - SRER_003-M-20190806-COMP-DNA1 Battelle Memorial Institute 3300070525 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.840609 -110.917189 6.86-7.39 2894639 9509 34 1 54 7 0.0 Metagenome 3300007521 *Microbiome Permanent Draft Freshwater microbial communities from lake liftoff mats and glacier meltwater in Antarctica Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-01 DOE Joint Genome Institute (JGI) 3300007521 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes slonczewski@kenyon.edu Joan Slonczewski No Environmental Aquatic Ice Freshwater Liftoff microbial mat Freshwater -77.605 163.163 2574423042 4595293 1355 49 1946 87 SRX2753506 Unrestricted 0.0 Metagenome 3300006416 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0770m University of Hawaii 3300006416 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Aphotic zone Marine 22.75 -158.0 907369247 1891698 1050 19 1625 41 0.0 Metagenome 3300003238 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK07-D DOE Joint Genome Institute (JGI) 3300003238 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 272617 878 30 4 32 6 SRX2575262 Unrestricted 0.0 Metagenome 3300017757 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 43 SPOT_SRF_2013-05-22 DOE Joint Genome Institute (JGI) 3300017757 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 424938499 999983 40 54 63 76 SRX5471853, SRX5471852, SRX5471851 Unrestricted 0.0 Metagenome 3300006671 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T10 (3) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006671 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 64178201 125566 72 0 121 0 0.0 Metagenome 3300042999 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver stomach microbial communities from Maple Ridge, British Columbia, Canada - Beaver3Stomach1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300042999 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Stomach Digestive system Unclassified stomach 49.18 -122.54 68513339 112645 3 2 8 6 SRX8345803 Unrestricted 34.96 Metagenome 3300029573 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35515 Beijing Genomics Institute (BGI) 3300029573 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 190701065 249080 189 2 282 5 0.0 Metagenome 3300014165 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin05_30_metaG DOE Joint Genome Institute (JGI) 3300014165 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1366076576 2619319 594 14 1008 17 SRX3292370 Unrestricted 7.46 Metagenome 3300015289 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_20JUN2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015289 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 131601506 240774 1 21 7 41 SRX3923072 Unrestricted 10.69 Metagenome 3300012812 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched mosquito-associated microbial communities from UW Madison campus, WI, USA - HID1973K_E11 MG DOE Joint Genome Institute (JGI) 3300012812 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 69864377 101641 42 1 83 4 SRX3564674 Unrestricted 0.0 Metagenome 3300049311 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA21 DOE Joint Genome Institute (JGI) 3300049311 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 717722236 1722660 556 7 995 4 Unrestricted 7.48 Metagenome 3300014118 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - In4P-11 SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300014118 Metagenome Analysis SPAdes 3.10.0 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1 -118.1 3336198 5838 12 3 16 5 SRX5057086 Unrestricted 0.0 Metagenome 3300000873 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 E3 (4) DOE Joint Genome Institute (JGI) 3300000873 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 53262263 90440 62 0 85 0 SRX3311544 Unrestricted 0.0 Metagenome 3300048577 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Wood chips microbial communities from bioreactor in Golden, Colorado, USA - AB_Metals_2 DOE Joint Genome Institute (JGI) 3300048577 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Unclassified Wood chips 39.7555 -105.2211 1094176823 1292322 429 8 520 9 Unrestricted 42.84 Metagenome 3300030249 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from adenoma patient in Ann Arbor, USA - MG100184 University of Michigan 3300030249 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 42.28 -83.74 25721314 43829 41 0 86 0 0.0 Metagenome 3300035028 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - T6-0 Autonomous University of Barcelona 3300035028 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 69145665 282439 566 0 1104 0 0.0 Metagenome 3300005280 *Microbiome Draft Switchgrass rhizosphere bulk soil microbial community from Michigan, US Bulk soil microbial communities from switchgrass field near East Lansing, Michigan, USA - East Lansing bulk soil v2 (version 2) DOE Joint Genome Institute (JGI) 3300005280 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes tiedjej@msu.edu James Tiedje No Environmental Terrestrial Agricultural land Soil Bulk soil Bulk soil 42.704677 -84.468818 224900927 563189 338 19 465 37 Unrestricted 0.0 Metagenome 3300061143 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IF1SW no PMA treatment Jet Propulsion Laboratory, California Institute of Technology 3300061143 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 96723099 160164 15 15 30 25 SRX2249371, SRX3808536, SRX2249370, SRX3808526 0.0 Metagenome 3300017438 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_22AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017438 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 263673724 469590 44 61 65 91 SRX3926818 Unrestricted 8.99 Metagenome 3300047562 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Muddy Creek, Edgewater, Maryland, USA - muddycreek_2019_sw_WHONDRS-S19S_0082 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047562 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.8749 -76.5464 649676009 1071253 348 77 565 109 Unrestricted 0.0 Metagenome 3300044904 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Soil microbial communities from peatland in Alberta, Canada - SBU-VEG 20-30 cm DOE Joint Genome Institute (JGI) 3300044904 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4621 -114.8803 592855997 795252 189 1 286 1 Unrestricted 19.72 Metagenome 3300046773 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mississippi River, Missouri, USA - NASQAN2012_124 DOE Joint Genome Institute (JGI) 3300046773 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 37.2164 -89.4675 8863783 29945 43 6 76 13 Unrestricted 0.0 Metagenome 3300042033 *Microbiome Permanent Draft Mollusc gills microbial communities from various hydrothermal vent in Atlantic Ocean Mollusc gills microbial communities from Semeiov-Ash lighthouse hydrothermal vent, Atlantic Ocean - BputSym_Se-AL_2_1115B Max Planck Institute for Marine Microbiology 3300042033 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 13.513467 -44.963133 49567010 62094 3 3 5 1 ERX3367187 0.0 Metagenome 2013843002 *Microbiome Permanent Draft Enriched contaminated groundwater dechlorinating microbial communities from synthetic mineral medium in Toronto, Ontario, Canada (KB-1) Groundwater dechlorinating microbial communities from synthetic mineral medium in Toronto, Ontario, Canada - Site contaminated with chlorinated ethenes DOE Joint Genome Institute (JGI) 2013843002 Metagenome Analysis lucy / pga released based on JGI ITS No Yes elizabeth.edwards@utoronto.ca Elizabeth Edwards, Elizabeth A. Edwards Yes 22823523 Engineered Bioremediation Chloroethene Tetrachloroethylene and derivatives Bioreactor Enriched contaminated groundwater 43.449776 -80.489086 7 29947996 41096 0 0 0 0 Unrestricted 0.0 Metagenome 3300013781 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS851 IDBA reassembly Marine Biological Laboratory 3300013781 Metagenome Analysis reassembly with IDBA-UD released by JGI data releasing policy No Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow diffuse flow hydrothermal vent 18.547192 -81.71817 6.98 8989129 11563 8 1 10 1 0.0 Metagenome 3300044224 *Microbiome Permanent Draft Simulated microbial communities of Trichodesmium and heterotrophic bacteria from Gulf of Aqaba, Eilat, Israel Simulated microbial communities of Trichodesmium and heterotrophic bacteria from Gulf of Aqaba, Eilat, Israel - T0-1 DOE Joint Genome Institute (JGI) 3300044224 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes yeala.shaked@mail.huji.ac.il Yeala Shaked No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified simulated 29.501 34.917 269676397 346701 109 13 158 19 Unrestricted 426.85 Metagenome 3300015267 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_31MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015267 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 111491418 205239 12 19 12 24 SRX3922897 Unrestricted 11.0 Metagenome 3300007314 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 861967750 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007314 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 150447875 211033 111 1 134 0 0.0 Metagenome 3300025191 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0104 (SPAdes) DOE Joint Genome Institute (JGI) 3300025191 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 21.51 -23.45 55484830 99267 47 23 65 25 SRX1983452 Unrestricted 0.0 Metagenome 3300050475 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - E13W16 DOE Joint Genome Institute (JGI) 3300050475 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 425293686 739582 240 28 418 39 Unrestricted 11.28 Metagenome 3300047407 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Congo River, Brazzaville, Congo - CONGO_061 DOE Joint Genome Institute (JGI) 3300047407 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater -4.3092 15.2356 234613070 537462 249 24 464 38 Unrestricted 17.26 Metagenome 3300060886 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Santa Rita Experimental Range, Tucson, Arizona, USA - SRER_005-M-20210810-comp-1 DOE Joint Genome Institute (JGI) 3300060886 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Desert Soil Unclassified Terrestrial soil 31.828844 -110.823985 1507485050 2775417 752 68 1493 83 Unrestricted 18.41 Metagenome 3300027887 *Microbiome Permanent Draft Microbial community impact on carbon sequestration in managed wetland Carbon farming Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk (version 2) DOE Joint Genome Institute (JGI) 3300027887 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Sediment Wetland 38.107 -121.6475 1716608143 4088418 1174 21 2241 31 SRX2553227, SRX2553225 Unrestricted 0.0 Metagenome 3300064754 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 586 in LaCrete, Alberta, Canada - S00JY_0246 Microbiome Insights 3300064754 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 58.01130917 -116.1709417 225578541 309973 99 0 142 1 0.0 Metagenome 3300037112 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPN1-2-X0 DOE Joint Genome Institute (JGI) 3300037112 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3568 19.0503 401789056 658263 118 4 146 11 SRX8163119 Unrestricted 24.17 Metagenome 3300025360 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025360 Metagenome Analysis spades v. 3.11.1 Yes Yes binskeep@montana.edu; jim.fredrickson@pnnl.gov William P. Inskeep; Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.376 -110.69 94027272 168331 51 0 70 0 SRX2553549 Unrestricted 0.0 Metagenome 3300003433 *Microbiome Permanent Draft Whitefly associated endosymbiont microbial communities from Neve Yaar, Israel Whitefly Bemisia tabaci associated secondary symbiont microbial communities from Neve Yaar, Israel - sample Cardinium_whitefly 3300003433 Metagenome Analysis released by JGI data releasing policy No Yes itaiopa6@gmail.com Itai Opatovsky No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Whitefly Bemisia tabaci associated 32.708101 35.179264 1216102 1301 1 0 1 0 0.0 Metagenome 3300032043 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24 DOE Joint Genome Institute (JGI) 3300032043 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1466595731 3535380 411 5 661 4 SRX5820239 Unrestricted 11.05 Metagenome 3300021449 *Microbiome Permanent Draft Longitudinal study of halite endolithic microbial communities Halite endolithic microbial communities from Salar Grande N, Atacama Desert, Chile - SG1-N-2013-04 Johns Hopkins University 3300021449 Metagenome Analysis metaSPAdes v.3.11.1 released by JGI data releasing policy Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Halite pinnacle -20.930197 -70.013428 790976118 1164211 159 12 276 9 0.0 Metagenome 3300001805 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Mar_QV11C DOE Joint Genome Institute (JGI) 3300001805 Metagenome Analysis Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 17346492 22798 11 0 16 0 SRX3321591 Unrestricted 0.0 Metagenome 3300007566 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763840445 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007566 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 178846491 251833 136 0 154 0 0.0 Metagenome 3300022744 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 3-17_Aug_MG DOE Joint Genome Institute (JGI) 3300022744 Metagenome Analysis spades v. 3.11.1-check Yes Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9301 -83.5517 325204601 671755 517 25 831 41 SRX4478628 Unrestricted 30.73 Metagenome 3300040725 *Microbiome Draft Metagenome of enrichment culture MWH-Canal-Kol6 Mixed culture microbial communities from University of Innsbruck, Austria - Rhodoluna sp. MWH-Canal-Kol6-Cov07 University of Innsbruck 3300040725 Metagenome Analysis SPAdes v. 3.13.1 released by JGI data releasing policy No Yes martin.hahn@uibk.ac.at Martin Hahn No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Mixed culture 47.848543 13.3429 1375962 1382 0 0 0 0 0.0 Metagenome 3300021571 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - E2014-0086-100LTR Downsampled Assembly University of Michigan 3300021571 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified freshwater lake 41.826417 -83.193817 17634119 33056 12 7 23 9 0.0 Metagenome 3300049236 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB12 DOE Joint Genome Institute (JGI) 3300049236 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 35118218 87140 117 3 278 4 Unrestricted 20.22 Metagenome 3300013025 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Fungus gardens microbial communities from leaf cutter ant in Botucatu, State of S?o Paulo, Brazil - Atta bisphaerica ABBM2 DOE Joint Genome Institute (JGI) 3300013025 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Fungi Unclassified Mycelium Unclassified fungus garden -22.847 -48.434 627226396 914178 215 128 360 297 SRX3899739 Unrestricted 33.9 Metagenome 3300065522 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 793 in Claresholm, Alberta, Canada - S00JY_0371 Microbiome Insights 3300065522 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 50.0026073 -113.3303972 5133847 7782 14 0 37 0 0.0 Metagenome 3300048074 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Woodchip biofilm microbial communities from lab scale WBR in Cornell University, Ithaca, NY, USA - rep3_cs_p1_w0 DOE Joint Genome Institute (JGI) 3300048074 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 1118009968 2181859 630 33 1032 57 Unrestricted 9.58 Metagenome 7000000572 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 765135172 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000572 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 726290 1793 0 0 0 0 SRX024177 0.0 Metagenome 3300069214 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from National Grasslands LBJ, Texas, USA - CLBJ_032-M-20210504-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069214 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Grasslands Soil Unclassified Terrestrial soil 33.40613 -97.594 4663730870 9827040 1874 71 3422 98 0.0 Metagenome 3300046412 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_151213.NP2 DOE Joint Genome Institute (JGI) 3300046412 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 643440373 1360388 492 67 791 112 Unrestricted 11.96 Metagenome 3300048790 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 S1 1-5 DOE Joint Genome Institute (JGI) 3300048790 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.0474 502427937 802346 153 24 254 33 Restricted 13.78 Metagenome 3300037421 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_1 DOE Joint Genome Institute (JGI) 3300037421 Metagenome Analysis metaspades v. 3.13.0 Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 2590540373 4060173 378 6 681 17 SRX9140427 Unrestricted 13.15 Metagenome 3300028580 *Microbiome Permanent Draft Sewage microbial communities from Oakland, California, United States Sewage microbial communities from Oakland, California, United States - Biofuel 10 (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300028580 Metagenome Analysis spades v. 3.11.1 Yes Yes hrbeller@lbl.gov Harry Beller No Engineered Wastewater Unclassified Sewage Unclassified sewage 37.82 -122.29 176743601 228932 125 0 138 0 SRX8667830, SRX8667831 Unrestricted 71.3 Metagenome 3300027869 *Microbiome Permanent Draft Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027869 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade Yes 30397342 Environmental Terrestrial Unclassified Soil Unclassified Surface soil 40.7999 -76.3402 1549735488 3386745 729 55 1357 92 SRX2837963 Unrestricted 0.0 Metagenome 3300022582 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 4 Selected contigs with viral hallmark genes Autonomous University of Barcelona 3300022582 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 1684016 2537 0 0 0 0 0.0 Metagenome 3300042792 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N1_40_50 NMDC pilot DOE Joint Genome Institute (JGI) 3300042792 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380143 -119.2723688 45473855 125918 184 17 287 29 SRX2523202 0.0 Metagenome 3300039001 *Microbiome Permanent Draft Marine microbial communities from North Atlantic, Canada Marine microbial communities from North Atlantic, Canada - 394958 National Research Council, Canada Plant Biotechnology Institute 3300039001 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 46.431 -48.48 18907230 38654 21 13 42 18 0.0 Metagenome 3300036516 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C5-1B DOE Joint Genome Institute (JGI) 3300036516 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 173841894 536564 337 9 676 23 SRX8787521 Unrestricted 4.91 Metagenome 3300020700 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 17SEP2007 hypolimnion DOE Joint Genome Institute (JGI) 3300020700 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 75507841 170109 119 5 161 4 Unrestricted 0.0 Metagenome 3300041836 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - C_33_wk_5 DOE Joint Genome Institute (JGI) 3300041836 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9702 -107.03 123362312 358888 226 12 354 14 SRX14809812 Unrestricted 6.93 Metagenome 3300045794 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - P2-R1-A DOE Joint Genome Institute (JGI) 3300045794 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.357 19.047 238569457 559191 167 27 321 46 Unrestricted 6.69 Metagenome 3300025584 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_150m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025584 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 318851834 600754 249 1 371 2 Unrestricted 0.0 Metagenome 3300006162 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 DOE Joint Genome Institute (JGI) 3300006162 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment watersheds 41.170727 -78.4726 4360069206 12864958 2525 187 4772 367 SRX2839559 Unrestricted 0.0 Metagenome 3300032131 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Lab enriched produced water microbial communities from pipeline in Medicine Hat, AB, Canada - S122S University of Calgary 3300032131 Metagenome Analysis MetaSpades v. 3.13.0 released by JGI data releasing policy No Yes nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis No Engineered Built environment Unclassified Pipeline Unclassified produced water 50.041667 -110.6775 106002846 380535 255 3 441 16 0.0 Metagenome 3300029452 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001838-81 Beijing Genomics Institute (BGI) 3300029452 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 64725000 83185 90 1 126 0 0.0 Metagenome 3300030075 *Microbiome Permanent Draft Ice-cream associated microbial communities from Maryland, United States Ice-cream associated microbial communities from Maryland, United States - 48 _R3 U.S. Food and Drug Administration 3300030075 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Ice-cream associated 38.98 -76.93 6611084 6770 6 0 2 0 0.0 Metagenome 3300009925 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R2 University of New South Wales 3300009925 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 69335230 116824 41 1 55 2 0.0 Metagenome 3300009490 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS852 no min length Marine Biological Laboratory 3300009490 Metagenome Analysis Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow marine hydrothermal vent 18.547101 -81.71817 6.45 214100442 1081687 120 9 328 28 0.0 Metagenome 3300000271 *Microbiome Permanent Draft Photobioreactor incubated microbial communities from Hamburg, Germany Photobioreactor incubated microbial communities from Hamburg, Germany - Sample 1 Goettingen Genomics Laboratory 3300000271 Metagenome Analysis No Yes g2l.info@gwdg.de Anja Poehlein, G2L Team Yes 23913425 Engineered Biotransformation Unclassified Microbial enhanced oil recovery Unclassified Photobioreactor incubated 53.560526 10.15 164692310 350699 344 58 497 84 0.0 Metagenome 3300027997 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Amundsen Gulf, Northwest Territories, Canada - Cases_109_6 DOE Joint Genome Institute (JGI) 3300027997 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Gulf Marine Unclassified seawater 70.66 -123.0 1432948475 3443180 736 24 1299 45 SRX5244044 Unrestricted 10.63 Metagenome 3300016467 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water reservoir in Singapore - WB_Site 3, Aug Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016467 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Lake Freshwater Unclassified freshwater 1.28 103.74 117690539 171338 26 16 25 18 0.0 Metagenome 3300027601 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepB_8h DOE Joint Genome Institute (JGI) 3300027601 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 187720107 366950 146 10 252 19 SRX5245182 Unrestricted 17.26 Metagenome 3300045070 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 007-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300045070 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9578 -106.9847 539865886 1326581 398 20 726 40 Unrestricted 8.11 Metagenome 3300028364 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #564 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028364 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 102171981 200477 55 9 77 10 SRX3242024 Unrestricted 0.0 Metagenome 3300038724 *Microbiome Permanent Draft Marine microbial communities from North Atlantic, Canada Marine microbial communities from North Atlantic, Canada - S9G National Research Council, Canada Plant Biotechnology Institute 3300038724 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 43.858 -60.157 50122815 78126 22 0 31 1 0.0 Metagenome 3300038351 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog2 BILS 3300038351 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 7100681 18419 18 3 21 2 ERX1594824 0.0 Metagenome 3300044536 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Roots microbial communities from millet plant in semiarid region near Thies, Senegal - COA2E DOE Joint Genome Institute (JGI) 3300044536 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Unclassified Roots Unclassified Root 14.75 -16.85 743378598 1123236 25 30 52 53 Unrestricted 25.26 Metagenome 3300005216 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLA_D2 DOE Joint Genome Institute (JGI) 3300005216 Metagenome Analysis Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.209923 -122.033409 908488325 2970097 1224 10 2522 23 SRX7142969 Unrestricted 0.0 Metagenome 2170459009 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm 454 Life Sciences 2170459009 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.804241 -0.372114 503178056 1334939 470 21 932 46 0.0 Metagenome 3300057021 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Wyoming, USA - R_L1_S1 DOE Joint Genome Institute (JGI) 3300057021 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 41.01206 -106.53689 2270084 5087 24 9 52 14 Unrestricted 3049.81 Metagenome 3300043543 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNPCB069 DOE Joint Genome Institute (JGI) 3300043543 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes viola.krukenberg@montana.edu Viola Krukenberg No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.5672 -110.8066 1064004049 1403680 481 10 668 14 Unrestricted 65.89 Metagenome 3300028023 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5 DOE Joint Genome Institute (JGI) 3300028023 Metagenome Analysis spades v. 3.11.1 Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 59.9989 10.7903 97352527 253520 127 33 220 59 SRX5272045 Unrestricted 8.37 Metagenome 3300006480 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0075m University of Hawaii 3300006480 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 430831968 1003790 468 51 648 87 0.0 Metagenome 7000000258 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 765074482 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000258 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 180105671 294460 0 0 0 0 0.0 Metagenome 3300049027 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - D4_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049027 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 524616725 1134413 599 33 1032 48 Unrestricted 0.0 Metagenome 3300000529 *Microbiome Permanent Draft Acid mine drainage (AMD) microbial communities from Fan Kou Mine, Shaoguan city, Guangdong Province, China Acid mine drainage (AMD) microbial communities from Fan Kou Mine, Shaoguan city, Guangdong Province, China - ACID_P Macrogen 3300000529 Metagenome Analysis released per JGI data release policy No Yes humin@soil.gd.cn Hu min No Environmental Aquatic Groundwater Freshwater Mine drainage Acid mine drainage 24.814784 113.602638 3.5 4131298 5864 0 0 2 0 0.0 Metagenome 3300050196 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D10_RHK1_2_to_SEK1 DOE Joint Genome Institute (JGI) 3300050196 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.244 740702798 1238793 432 176 690 255 Unrestricted 20.05 Metagenome 3300001011 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized -NN613 DOE Joint Genome Institute (JGI) 3300001011 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 45304 133 12 0 20 0 SRX1986972 Unrestricted 0.0 Metagenome 3300045792 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - P1-R3-A DOE Joint Genome Institute (JGI) 3300045792 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.355 19.0438 189784701 422352 111 20 205 32 Unrestricted 6.29 Metagenome 3300020263 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000809 (ERX555942-ERR599125) CEA Genoscope 3300020263 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -61.9898 -49.3613 221863261 520459 257 63 420 113 0.0 Metagenome 3300025582 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-two (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025582 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.299 -156.61 262261217 603045 243 18 470 34 SRX2901268 Unrestricted 0.0 Metagenome 3300031215 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #92 DOE Joint Genome Institute (JGI) 3300031215 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.457 78.1911 170686442 364010 90 18 127 17 SRX5649407 Unrestricted 81.02 Metagenome 3300006164 *Microbiome Permanent Draft Marine microbial communities from the West Antarctic Peninsula, for metatranscriptomic analysis Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA DOE Joint Genome Institute (JGI) 3300006164 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes mattcott@udel.edu Matthew Cottrell, Matthew T. Cottrell No Environmental Aquatic Coastal Marine Unclassified Marine -64.8156 -64.0406 1039575013 3065471 452 274 700 419 SRX2848062 Unrestricted 0.0 Metagenome 3300019836 *Microbiome Permanent Draft Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil - Buba_C3 Center for Advanced Technologies in Genomics, Sao Paulo University 3300019836 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 46898310 83237 52 1 74 0 0.0 Metagenome 3300003807 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jun07 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003807 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 11574864 26983 35 11 51 21 SRX2565200 Unrestricted 0.0 Metagenome 3300022584 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 10 Selected contigs with viral hallmark genes Autonomous University of Barcelona 3300022584 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 276922 461 0 0 0 0 0.0 Metagenome 3300042794 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S2_10_20 NMDC pilot DOE Joint Genome Institute (JGI) 3300042794 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228379 -119.2717467 38110297 105982 168 11 289 21 SRX2523278 0.0 Metagenome 3300044935 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_6_B DOE Joint Genome Institute (JGI) 3300044935 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 192342259 225177 98 1 129 2 Unrestricted 72.89 Metagenome 3300033125 *Microbiome Finished Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan HAN_ILS Chunlab, Inc 3300033125 Metagenome Analysis SPAdes v. 3.8.2 released by JGI data releasing policy No Yes chojc@inha.ac.kr; krmoon518@gmail.com Jang-Cheon Cho; Kira Moon No Environmental Aquatic River Freshwater Unclassified Freshwater 37.6518694 126.72164723 14933787 21454 0 0 0 0 0.0 Metagenome 3300052903 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Colorado, USA - CP_L3_S1 DOE Joint Genome Institute (JGI) 3300052903 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 39.94308 -105.93669 114270574 210101 228 33 493 47 Unrestricted 31.78 Metagenome 3300039250 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P11_D2 DOE Joint Genome Institute (JGI) 3300039250 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 33555668 60207 38 20 77 36 SRX9635094, SRX9635095 Unrestricted 0.0 Metagenome 3300027377 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus exumae BAHAMAS.3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027377 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 531972070 522114 3 3 3 5 SRX3340328 Unrestricted 0.0 Metagenome 3300035131 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0606S02 DOE Joint Genome Institute (JGI) 3300035131 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8959 -97.0388 928378037 1909439 456 9 805 18 SRX8256175 Unrestricted 7.69 Metagenome 3300029454 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001938-25 Beijing Genomics Institute (BGI) 3300029454 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 86593610 113008 78 0 122 0 0.0 Metagenome 3300029829 *Microbiome Permanent Draft Cyanobacterial mat microbial communities from Siderastrea siderea from Carrie Bow Caye Field Station, Belize Cyanobacterial mat microbial communities from Siderastrea sidereal surface, the Meso-American Barrier Reef, Belize - Sid3 University of Maryland 3300029829 Metagenome Analysis IDBA v. 2.3 released by JGI data releasing policy No Yes anyabrown@ufl.edu Anya Brown No Host-associated Invertebrates Unclassified Cnidaria Unclassified cyanobacterial mat from coral surface 16.80288 -88.08213 90342974 98794 36 5 51 8 0.0 Metagenome 3300042070 *Microbiome Permanent Draft Forest and sugarcane field soil microbial communities from Santa Rita do Passa , Quatro, Sao Paulo, Brazil Soil microbial communities from sugarcane field in Santa Rita do Passa , Quatro, Sao Paulo, Brazil - SUG-W_1 UNESP-FCAV 3300042070 Metagenome Analysis Custom JGI assembly. Yes Yes No Environmental Terrestrial Unclassified Soil Agricultural land Soil -21.708519 -47.582469 51876531 131960 47 0 104 0 SRX9176018 0.0 Metagenome 3300060376 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210530_03_05 DOE Joint Genome Institute (JGI) 3300060376 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 1177443324 1679976 277 160 336 254 Unrestricted 30.73 Metagenome 3300044709 *Microbiome Permanent Draft Switchgrass rizosphere microbial communities from Pacific Northwest National Laboratory, Richland, WA, United States Soil microbial communities from switchgrass plot in Kellogg Biological Station, Michigan, United States - EC5013 DOE Joint Genome Institute (JGI) 3300044709 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes james.moran@pnnl.gov James Moran No Environmental Terrestrial Unclassified Soil Agricultural land soil 42.4058 -85.4023 1898368038 3119148 517 17 905 29 Unrestricted 13.59 Metagenome 2140918001 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - OSP_D DOE Joint Genome Institute (JGI) 2140918001 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.7315 -110.711389 51518426 116192 26 5 60 0 Unrestricted 0.0 Metagenome 3300002216 *Microbiome Permanent Draft Basalt sediment microbial communities from Loihi, Hawaii, USA Basalt sediment microbial communities from Loihi, Hawaii, USA - Two Loihi Rocks 3300002216 Metagenome Analysis released by JGI data releasing policy No Yes esinger@lbl.gov Esther Singer No Environmental Aquatic Oceanic Marine Benthic Basalt sediment 18.92 -155.27 8 383424084 1330064 329 6 980 15 0.0 Metagenome 3300000830 *Microbiome Permanent Draft Abyssal marine microbial communities from the Red Sea Abyssal marine microbial communities from the Red Sea, sample ts15w Beijing Genomics Institute (BGI) 3300000830 Metagenome Analysis released per JGI data release policy No Yes salah.edinne@gmail.com Salim B No Environmental Aquatic Oceanic Marine Abyssal plane Abyssal marine 20.107523 38.670044 0 0 0 0 0 0 0.0 Metagenome 3300069379 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_035-O-20160803-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069379 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 16295991 51266 36 4 87 10 0.0 Metagenome 3300028740 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N2_3 DOE Joint Genome Institute (JGI) 3300028740 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 489813093 1264965 679 46 1140 81 SRX5357460 Unrestricted 0.0 Metagenome 3300028362 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #136 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028362 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 64461794 100265 35 1 62 1 SRX3296162 Unrestricted 0.0 Metagenome 3300038722 *Microbiome Permanent Draft Coastal seawater microbial communities from Massachusetts, USA Coastal seawater microbial communities from Nahant, Massachusetts, USA - M2.T28 Massachusetts Institute of Technology 3300038722 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Coastal seawater 42.0 -70.0 11469703 20201 29 0 37 0 0.0 Metagenome 3300036915 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10CP15 DOE Joint Genome Institute (JGI) 3300036915 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 653768601 1532380 517 23 882 28 SRX8377786 Unrestricted 6.53 Metagenome 3300036968 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - SCT 48 II DOE Joint Genome Institute (JGI) 3300036968 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 874965877 1719502 748 120 1207 191 SRX8377305 Unrestricted 9.46 Metagenome 3300012143 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT790_2 DOE Joint Genome Institute (JGI) 3300012143 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9225 -106.9514 137209773 320403 225 21 437 41 SRX3369045 Unrestricted 0.0 Metagenome 3300060595 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210603_07_21 DOE Joint Genome Institute (JGI) 3300060595 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 525634166 809115 239 83 288 112 Unrestricted 28.32 Metagenome 3300009526 *Microbiome Permanent Draft Marine microbial communities from western Arctic Ocean Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 DOE Joint Genome Institute (JGI) 3300009526 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh Yes 30271971 Environmental Aquatic Oceanic Marine Unclassified Marine 79.2466 -150.0613 1582273711 3216689 794 386 1390 600 SRX2997664 Unrestricted 0.0 Metagenome 3300029530 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P057V6 Beijing Genomics Institute (BGI) 3300029530 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 133009621 151031 95 1 143 0 0.0 Metagenome 3300023119 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (version 2) DOE Joint Genome Institute (JGI) 3300023119 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1127190874 2200806 457 61 723 76 SRX3780730 Unrestricted 26.5 Metagenome 3300024230 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 48D DOE Joint Genome Institute (JGI) 3300024230 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 320571656 654256 258 21 368 42 SRX4465449 Unrestricted 16.22 Metagenome 3300059753 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1550A-3 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059753 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2328 -123.878 103307573 244390 199 92 279 123 SRX2753720 Unrestricted 0.0 Metagenome 3300004226 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 75_LOW10 DOE Joint Genome Institute (JGI) 3300004226 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 72861140 168690 35 0 79 0 SRX2720795 Unrestricted 0.0 Metagenome 3300050320 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_87 DOE Joint Genome Institute (JGI) 3300050320 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.875 160.739 228130244 333121 21 20 25 18 SRX18235978 Restricted 56.25 Metagenome 3300001563 *Microbiome Permanent Draft Human fecal microbial communities from Yokohama, Japan, from healthy Japanese individuals Human fecal microbial communities from Yokohama, Japan, from healthy Japanese individuals - AR1 metagenome reads 3300001563 Metagenome Analysis released by JGI data releasing policy No Yes sarklor@gmail.com Ciaran O'Brien No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 35.490139 139.683694 0 0 0 0 0 0 0.0 Metagenome 3300059061 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Biomass microbial communities from acid-phase anaerobic digester in WWTP, Madison, WI, USA - 20210507_SampleC DOE Joint Genome Institute (JGI) 3300059061 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Sludge Anaerobic digester Unclassified Biomass 43.0333 -89.3563 778903529 818747 579 2 582 2 Unrestricted 16.63 Metagenome 3300047316 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 soil DOE Joint Genome Institute (JGI) 3300047316 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121006 -123.270477 5.04 1525444359 2322325 352 11 566 19 Unrestricted 13.75 Metagenome 3300022742 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant dump, University of Wisconsin, Madison, United States - 3A5A DOE Joint Genome Institute (JGI) 3300022742 Metagenome Analysis spades v. 3.11.1-check Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0758 -89.4125 169112894 229193 131 1 145 1 SRX4663597 Unrestricted 50.81 Metagenome 2084038000 *Microbiome Draft Bovine rumen viral communities from University of Illinois Dairy Farm in Urbana, IL Bovine rumen viral communities from University of Illinois Dairy Farm in Urbana, IL, Cow rumen 7664 DOE Joint Genome Institute (JGI) 2084038000 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes bwhite44@illinois.edu Bryan White Yes 22004549 Host-associated Mammals Stomach Digestive system Rumen Bovine rumen 40.0886 -88.2202 153674931 445555 23 0 41 0 Unrestricted 0.0 Metagenome 3300039815 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_051-O-20160822-COMP-DNA1 Battelle Memorial Institute 3300039815 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 29559585 83496 101 23 188 40 0.0 Metagenome 3300061128 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIF2SW no PMA treatment Jet Propulsion Laboratory, California Institute of Technology 3300061128 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 73026778 99327 31 7 34 8 SRX3808520, SRX3808540, SRX2249337, SRX2249360 0.0 Metagenome 3300035043 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B4.10_Sample4.Rodeo10.Well1210 DOE Joint Genome Institute (JGI) 3300035043 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 316630258 519152 307 0 458 0 SRX8353566 Unrestricted 29.15 Metagenome 3300038663 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Sediment microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_South_5 DOE Joint Genome Institute (JGI) 3300038663 Metagenome Analysis metaspades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Wetlands Marine Sediment sediment 26.3584 -80.2982 950148815 1599699 493 5 911 7 SRX9405190 Unrestricted 13.46 Metagenome 3300037114 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPON1-1-X0 DOE Joint Genome Institute (JGI) 3300037114 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3569 19.0501 910760359 1675147 305 10 494 11 SRX8163549 Unrestricted 12.18 Metagenome 3300011236 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01234 Weill Cornell Medical College 3300011236 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.65 -73.97 44958001 79502 31 0 42 0 SRX823189 0.0 Metagenome 3300026929 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A3w-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026929 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 51393548 167069 91 1 188 2 SRX2576264 Unrestricted 0.0 Metagenome 3300048072 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Woodchip biofilm microbial communities from lab scale WBR in Cornell University, Ithaca, NY, USA - rep1_cs_p2_w5 DOE Joint Genome Institute (JGI) 3300048072 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 1196845050 2356589 691 37 1180 66 Unrestricted 10.24 Metagenome 3300037241 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 P-2-M DOE Joint Genome Institute (JGI) 3300037241 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3535 19.0473 841837021 1610484 295 9 513 21 SRX8147357 Unrestricted 9.88 Metagenome 3300007918 *Microbiome Permanent Draft Anaerobic oil degrading microbial communities from River Tyne estuarine sediment Microbial communities from sediment of the River Tyne Estuary, UK - Pasteurized_176d_2 University of Liverpool 3300007918 Metagenome Analysis IDBA-DB released per JGI data release policy No Yes ana.suarez-suarez@ncl.ac.uk, ana.suarez-suarez@ncl.ac.uk; ian.head@ncl.ac.uk Ana Su?rez-Su?rez, Ana Suarez-Suarez; Ian Head No Environmental Aquatic Unclassified Sediment Unclassified sediment 54.9632021 -1.6348029 153784363 303486 126 3 274 5 0.0 Metagenome 2162886013 *Microbiome Draft Switchgrass rhizosphere microbial communities from Michigan, USA Bulk soil microbial communities from switchgrass field near Rose Lake, East Lansing, Michigan, USA - RL2 Bulk Soil v1 DOE Joint Genome Institute (JGI) 2162886013 Metagenome Analysis Newbler and/or Velvet released based on JGI ITS No Yes tiedjej@msu.edu James Tiedje No Environmental Terrestrial Agricultural land Soil Bulk soil Bulk soil 42.794771 -84.393804 186200696 297447 5 0 8 1 Unrestricted 0.0 Metagenome 3300047089 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 soil DOE Joint Genome Institute (JGI) 3300047089 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121497 -123.269638 4.84 1354998819 2180414 385 47 666 76 Unrestricted 13.96 Metagenome 3300065524 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 798 in Beiseker, Alberta, Canada - S00JY_0291 Microbiome Insights 3300065524 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.24546833 -113.3320866 4452518 6665 17 1 45 2 0.0 Metagenome 3300007657 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 158479027 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007657 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 158014242 193845 125 3 222 0 0.0 Metagenome 3300026209 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026209 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 345062125 696860 247 3 369 8 SRX2782344 Unrestricted 0.0 Metagenome 3300070961 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Agroecosystem, Kansas, USA - KONA_048-M-20190618-COMP-DNA1 3300070961 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Agricultural land Soil 313105 1104 9 0 16 0 0.0 Metagenome 3300007965 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-25 DOE Joint Genome Institute (JGI) 3300007965 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 715367268 1261708 980 6 1673 19 SRX3198636 Unrestricted 0.0 Metagenome 7000000574 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160582958 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000574 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 164340744 315002 0 0 0 0 0.0 Metagenome 3300043783 *Microbiome Permanent Draft Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA - SWaN 13 years plot 14 DOE Joint Genome Institute (JGI) 3300043783 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes luizdomeignoz@gmail.com Luiz Domeignoz Horta No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 42.303 -72.1228 1957647607 3213170 374 29 631 47 SRX15792984 Unrestricted 12.06 Metagenome 3300012031 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #498 DOE Joint Genome Institute (JGI) 3300012031 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 136984745 298978 102 12 167 10 SRX3296045 Unrestricted 0.0 Metagenome 3300069212 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Lower Teakettle, Sierra National Forest, California, USA - TEAK_004-O-20210726-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069212 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 37.001687 -119.036304 3202425631 7051568 1275 262 2268 386 0.0 Metagenome 3300042379 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME20Apr2010-rr0836 DOE Joint Genome Institute (JGI) 3300042379 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 421193322 675743 140 77 195 110 Unrestricted 24.23 Metagenome 3300033797 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-2-S DOE Joint Genome Institute (JGI) 3300033797 Metagenome Analysis spades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 160301796 446985 229 6 394 14 SRX8137876, SRX8137875 Unrestricted 0.0 Metagenome 3300020147 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_5-13C DOE Joint Genome Institute (JGI) 3300020147 Metagenome Analysis spades v. 3.10.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.305 -116.2547 312907534 653428 358 14 618 22 SRX3936726 Unrestricted 20.38 Metagenome 3300030429 *Microbiome Permanent Draft Deep subsurface porewater microbial communities from Mt Terri URL, St-Ursanne, Switzerland Deep subsurface porewater microbial communities from Mt Terri URL, St-Ursanne, Switzerland - BRH_38 Swiss Federal Institute of Technology in Lausanne 3300030429 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Groundwater Freshwater Unclassified Deep subsurface porewater 47.37892341 7.16496703 214866403 280510 106 2 147 4 0.0 Metagenome 3300012814 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched millipede-associated microbial communities from UW Madison campus, WI, USA - HID1971K_E6 MG DOE Joint Genome Institute (JGI) 3300012814 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 85897211 103915 77 0 99 0 SRX3564627 Unrestricted 0.0 Metagenome 3300006307 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human subgingival plaque microbial communities from NIH, USA - visit 2, subject 764042746 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006307 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human 39.0042816 -77.1012173 152599698 284687 130 0 157 1 0.0 Metagenome 3300045999 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater viral communities from Lake Mendota, Wisconsin, United States - ME_2020-07-24_5m_Virus_AB DOE Joint Genome Institute (JGI) 3300045999 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 897811500 1837274 251 40 365 55 Unrestricted 35.56 Metagenome 3300012289 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100581 University of Pennsylvania 3300012289 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 2924493 7162 4 4 10 6 SRX756173 0.0 Metagenome 3300034786 *Microbiome Permanent Draft Sediment microbiome project Sediment microbial communities from wetland pond in Xixi Nat. Park in Hangzhou, Zhejiang, China - 8 Beijing Genomics Institute (BGI) 3300034786 Metagenome Analysis megahit v. 1.1.3 released by JGI data releasing policy No Yes 17826834892@163.com wang binhao No Environmental Aquatic Pond Freshwater Sediment sediment 30.268 120.04 111128766 158112 74 2 136 5 0.0 Metagenome 7000000077 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 686765762 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000077 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 44400269 59189 0 0 0 0 0.0 Metagenome 3300026663 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK07-B (SPAdes) DOE Joint Genome Institute (JGI) 3300026663 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.43 -89.41 7042990 23158 76 6 129 6 SRX1991347 Unrestricted 0.0 Metagenome 2124908006 *Microbiome Draft Soil microbial communities from FACE and OTC sites in USA Soil microbial communities from sample at FACE Site Metagenome WIR_Oz2 DOE Joint Genome Institute (JGI) 2124908006 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes kuske@lanl.gov Cheryl Kuske No Environmental Terrestrial Unclassified Soil Unclassified Soil 45.68 -89.63 339617125 930722 471 49 710 0 Unrestricted 0.0 Metagenome 2004247007 *Microbiome Permanent Draft Hypersaline mat microbial communities from Guerrero Negro, Baja California Sur, Mexico Hypersaline mat microbial communities from Guerrero Negro, Mexico - 10-22 mm depth into microbial mat DOE Joint Genome Institute (JGI) 2004247007 Metagenome Analysis No Yes nrpace@colorado.edu Pace, Norman Yes 18523433 Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Microbial mats Hypersaline mat 27.68908 -113.917 6-9 8017278 13177 5 0 2 0 0.0 Metagenome 3300002280 *Microbiome Permanent Draft Soil microbial communities from Capivara Sierra National Park, Brazil Soil microbial communities from sand sediment in Caatinga - Brazil 3300002280 Metagenome Analysis CLC Genomics Workbench released by JGI data releasing policy No Yes dfdomingos@uol.com.br Daniela Domingos, Daniela F. Domingos No Environmental Terrestrial Sand Soil Unclassified Soil -8.6625 -42.6784 41449 43 0 0 0 0 0.0 Metagenome 3300051063 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BT33-08_D0 DOE Joint Genome Institute (JGI) 3300051063 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3555 19.0492 35835464 73497 39 26 61 43 Restricted 130.75 Metagenome 3300008076 *Microbiome Permanent Draft Simulated bacterial communities (sequence read mixture) from the NCBI bacterial genome collection Simulated bacterial communities (sequence read mixture) from the NCBI bacterial genome collection University of York 3300008076 Metagenome Analysis released per JGI data release policy No Yes richard.randle-boggis@york.ac.uk Richard Randle-Boggis No Engineered Modeled Unclassified Simulated communities (sequence read mixture) Unclassified Simulated 839451009 2887019 4351 2 7545 6 0.0 Metagenome 3300013913 *Microbiome Permanent Draft Sewage treatment plant microbial communities from Vermont, USA Sewage treatment plant microbial communities from Vermont, USA - ANOX_B Norwich University 3300013913 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 27610223 Engineered Wastewater Unclassified Industrial wastewater Unclassified Sewage treatment plant 43.727094 -72.425964 6722263 13943 4 2 10 1 SRX1056796 0.0 Metagenome 7000000598 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159207311 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000598 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 71460939 139364 0 0 0 0 0.0 Metagenome 3300047564 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Icacos River, Naguabo, Naguabo, Puerto Rico - icacos_2019_sw_WHONDRS-S19S_0094 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047564 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 18.2758 -65.7853 674801524 1110913 307 103 508 136 Unrestricted 0.0 Metagenome 3300056304 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_181002.NP2 DOE Joint Genome Institute (JGI) 3300056304 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 1129425302 2375953 625 79 993 136 Restricted 13.62 Metagenome 3300045033 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Plains ecozone, Canada - Lake 04-616 Genome Quebec 3300045033 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 59.944209 -111.853586 836959300 1945759 401 152 659 230 0.0 Metagenome 3300044902 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Myxacorys chilensis ATA2-1-KO14 and co-occurring heterotrophs from soil from Atacama Desert, Chile - 20190301_31B DOE Joint Genome Institute (JGI) 3300044902 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Sand Soil Desert Soil -29.3164 -71.2486 10019025 9337 5 0 5 0 Unrestricted 0.0 Metagenome 3300001327 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF)- 6 month illumina University of Tennessee 3300001327 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 22708808 110124 76 0 107 0 0.0 Metagenome 3300007312 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159247771 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007312 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 103087913 133905 87 0 120 0 0.0 Metagenome 3300012267 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 3 #767 DOE Joint Genome Institute (JGI) 3300012267 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 157623777 318614 156 5 262 10 SRX3241974 Unrestricted 0.0 Metagenome 3300008151 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763961826 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008151 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 21897721 50441 28 0 50 1 0.0 Metagenome 3300049522 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C24_B_7_control DOE Joint Genome Institute (JGI) 3300049522 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 376110604 908939 559 29 1132 36 Unrestricted 19.28 Metagenome 3300000383 *Microbiome Draft Switchgrass adapted compost microbial communities from mini bioreactor at UC Davis Microcrystalline cellulose adapted microbial communities from mini bioreactor at UC Davis - Sample JP60#7 DOE Joint Genome Institute (JGI) 3300000383 Metagenome Analysis released based on JGI ITS Yes Yes jmgladden@lbl.gov, JMGladden@lbl.gov John Gladden No Engineered Solid waste Composting Grass Bioreactor Switchgrass adapted compost 38.546 -121.7533 58951776 100364 69 0 74 0 Unrestricted 0.0 Metagenome 3300011524 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00414 Weill Cornell Medical College 3300011524 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.92 18647141 32596 10 0 23 0 SRX822384 0.0 Metagenome 3300020415 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001146 (ERX555973-ERR599166) CEA Genoscope 3300020415 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 39.0869 -70.0111 1027169053 2487547 670 73 1420 135 0.0 Metagenome 3300031463 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-019-1 DOE Joint Genome Institute (JGI) 3300031463 Metagenome Analysis spades v. 3.12.0 Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.5676 -110.8075 1019682927 1676343 765 1 973 2 SRX5356221 Unrestricted 59.79 Metagenome 3300022069 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022069 Metagenome Analysis spades v. 3.11.1-check Yes Yes chenf@umces.edu; bcampb7@clemson.edu Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.130153 -75.249887 125480120 338605 32 1 43 1 SRX2745131, SRX3785818, SRX3785817 Unrestricted 0.0 Metagenome 3300020468 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_A100000164 (ERX555914-ERR598993) CEA Genoscope 3300020468 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 35.7392 14.3321 1305021765 3113166 616 15 1124 13 ERX555914, ERX556002 0.0 Metagenome 3300070926 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Florida, USA - DSNY_006-M-20180823-COMP-DNA1 3300070926 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 10289272 31047 61 5 97 15 0.0 Metagenome 3300025409 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_4_150 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025409 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 165011679 283696 103 0 133 1 SRX3002042 Unrestricted 0.0 Metagenome 3300045214 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_5_B DOE Joint Genome Institute (JGI) 3300045214 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 182260445 220451 112 1 134 2 Unrestricted 77.29 Metagenome 3300042778 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S3_30_40 NMDC pilot DOE Joint Genome Institute (JGI) 3300042778 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen Yes 29920461 Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228508 -119.2716818 20152503 55306 51 2 106 1 SRX2523204 0.0 Metagenome 3300009013 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Gongxiaoshe hot spring, China to study Microbial Dark Matter (Phase II) - GXS 20120812B DOE Joint Genome Institute (JGI) 3300009013 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes brian.hedlund@unlv.edu, rstepanauskas@bigelow.org; brian.hedlund@unlv.edu Brian P. Hedlund, Ramunas Stepanauskas; Brian Hedlund No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring 25.4401 98.4408 7.46 7410066 21202 30 0 46 0 SRX2753916 Unrestricted 0.0 Metagenome 3300050029 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-P1(1) 40-44 DOE Joint Genome Institute (JGI) 3300050029 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.355 19.0438 662217971 979216 229 2 333 5 Restricted 18.23 Metagenome 3300029606 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 008_6_16_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029606 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 142040289 184384 130 3 220 3 0.0 Metagenome 3300042212 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D94_3 DOE Joint Genome Institute (JGI) 3300042212 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 227535225 380888 201 13 281 24 Unrestricted 77.27 Metagenome 3300045889 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Geyser Creek, Yellowstone National Park, WY, United States - MSUNE_GC_04 University of Wisconsin, Madison 3300045889 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.6877 -110.7282 209307857 294868 139 3 189 0 0.0 Metagenome 3300014824 *Microbiome Permanent Draft Human fecal microbial commmunities from Fecal Microbiota Transplantation (FMT) for ulcerative colitis - University of Washington Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P279T2 University of Washington 3300014824 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26288277 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 407332508 600745 526 0 689 0 SRX1131750 0.0 Metagenome 3300025668 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI073_LV_10m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025668 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 455395102 861389 425 45 579 56 Unrestricted 0.0 Metagenome 3300004261 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 127_HOW14 DOE Joint Genome Institute (JGI) 3300004261 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 83723350 187157 45 0 108 0 SRX2722000 Unrestricted 0.0 Metagenome 3300028048 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_02 DOE Joint Genome Institute (JGI) 3300028048 Metagenome Analysis spades v. 3.11.1 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen 49.6935 -112.8418 1571803452 2412511 1443 26 1758 23 SRX5250161 Unrestricted 43.21 Metagenome 3300008282 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159166850 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008282 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 151681049 218808 174 3 286 3 0.0 Metagenome 2058419015 *Microbiome Permanent Draft Feline fecal microbial communities from Illinois, USA cat metagenome 5 Research and Testing Laboratory 2058419015 Metagenome Analysis seqman NGEN transcriptome released per JGI data release policy No Yes sdowd@pathogenresearch.org Scot E. Dowd No Host-associated Mammals Large intestine Digestive system Fecal Feline fecal 40.11 -88.4 46426704 137197 143 0 225 0 0.0 Metagenome 3300034065 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 1-5 DOE Joint Genome Institute (JGI) 3300034065 Metagenome Analysis spades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 500228348 982541 213 28 354 46 SRX8138099, SRX8138098 Unrestricted 0.0 Metagenome 3300037843 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P16_D8 DOE Joint Genome Institute (JGI) 3300037843 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 1233304473 1739460 294 2 407 4 SRX9404374 Unrestricted 48.42 Metagenome 3300043528 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield ecozone, Canada - Lake 06-293 Genome Quebec 3300043528 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 55.487013 -98.050248 1113231625 2631283 394 122 653 238 0.0 Metagenome 3300003470 *Microbiome Permanent Draft Air microbial communities from Cairo, Egypt Air microbial communities from Cairo, Egypt - Sample from New Cairo 3300003470 Metagenome Analysis released by JGI data releasing policy No Yes s.elgogary@aucegypt.edu Sawsan El Gogary, Sawsan ElGogary No Environmental Air Unclassified Outdoor Air Unclassified Air 30.02 31.5 0 0 0 0 0 0 0.0 Metagenome 3300007279 *Microbiome Permanent Draft Hydrothermal vent microbial communities from Crab Spa hydrothermal vent, East Pacific Rise Hydrothermal vent microbial communities from Crab Spa hydrothermal vent, East Pacific Rise - large volume pump, sample 4 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300007279 Metagenome Analysis MEGAHit released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal fluid 9.844167 -104.296667 62973825 170835 489 21 822 48 0.0 Metagenome 3300045141 *Microbiome Permanent Draft Forest soil microbial communities from boreal-temperate forests in Minnesota, USA Forest soil microbial communities from Cloquet Forestry Center, Minnesota, USA - Cloquet DRY DO D5 DOE Joint Genome Institute (JGI) 3300045141 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pankaj.trivedi@colostate.edu Pankaj Trivedi No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 46.31 -92.3 649151805 1085530 237 7 432 12 Unrestricted 14.97 Metagenome 3300036362 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C2-9C DOE Joint Genome Institute (JGI) 3300036362 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 118026337 355582 247 4 467 7 SRX8817123 Unrestricted 4.84 Metagenome 3300045867 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from the Norris Geyser Basin, Yellowstone National Park, WY, United States - MSUNE_N_02 University of Wisconsin, Madison 3300045867 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.72658 -110.70914 79091408 134595 47 4 78 4 0.0 Metagenome 3300026722 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK07-A (SPAdes) DOE Joint Genome Institute (JGI) 3300026722 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.43 -89.41 19240780 61579 110 6 192 4 SRX1991350 Unrestricted 0.0 Metagenome 3300024492 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepC_8h DOE Joint Genome Institute (JGI) 3300024492 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 105345484 248985 125 5 193 6 SRX4547474 Unrestricted 16.29 Metagenome 3300034945 *Microbiome Permanent Draft Farm soil microbial communities from Tibetan Plateau, China Farm soil microbial communities from Tibetan Plateau, China - G4U Beijing Institute of Life Science, Chinese Academy of Sciences 3300034945 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Terrestrial Unclassified Soil Farm Farm soil 74154836 161898 80 2 146 4 SRX374563 0.0 Metagenome 3300002331 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP08-I5 3300002331 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300047380 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_110406.NP1 DOE Joint Genome Institute (JGI) 3300047380 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 831235576 1697338 464 37 658 64 Unrestricted 15.71 Metagenome 3300013479 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00912 Weill Cornell Medical College 3300013479 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.88 3473549 4064 3 0 7 2 SRX822875 0.0 Metagenome 3300028968 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 504_12M Beijing Genomics Institute (BGI) 3300028968 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 103931822 135822 95 0 110 0 ERX491151 0.0 Metagenome 7000000701 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 159369152 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000701 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 151814 300 0 0 0 0 SRX023271, SRX023270 0.0 Metagenome 3300001834 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM2, ROCA_DNA019_0.2um_2g 3300001834 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River plume Marine Plankton Marine plankton 10.2885 -54.512 76646128 165920 40 3 60 9 0.0 Metagenome 3300005796 *Microbiome Permanent Draft Subglacial freshwater microbial communities from Lake Whillans, Antarctica Subglacial sediment microbial community from Lake Whillans, Antarctica - at 14-16 cm depth Marine Biological Laboratory 3300005796 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes aachberger1216@gmail.com Amanda Achberger No Environmental Aquatic Subglacial lake Deep subsurface Sediment sediment -84.24 -153.694 29255309 46391 31 0 41 0 0.0 Metagenome 3300025615 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWB_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025615 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.015041 -122.501831 389769327 685982 241 2 387 1 SRX7142757 Unrestricted 0.0 Metagenome 3300048855 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD10 DOE Joint Genome Institute (JGI) 3300048855 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.347657 -119.2808 769346265 1001796 176 77 221 88 Unrestricted 37.89 Metagenome 3300034018 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021 DOE Joint Genome Institute (JGI) 3300034018 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1472203603 2836945 646 89 901 118 SRX7621634 Unrestricted 15.23 Metagenome 3300013541 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100196 University of Pennsylvania 3300013541 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 265075 669 3 0 5 0 SRX756703 0.0 Metagenome 3300002452 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Tailings pond microbial communities from Northern Alberta -TP6_2010 McGill University 3300002452 Metagenome Analysis released per JGI data release policy No Yes scaffrey@genomealberta.ca, scaffrey@genomealberta.ca; pfdunfie@ucalgary.ca Sean M Caffrey, Sean Caffrey; Peter Dunfield No Engineered Built environment Petrochemical Tailings pond Unclassified Hydrocarbon resource environments 57.02 -111.55 0 0 0 0 0 0 0.0 Metagenome 3300038786 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Taynaya Bay, Antarctica - #411 Australian Centre for Ecogenomics 3300038786 Metagenome Analysis Spades v. 3.13.0 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.457867 78.220083 675093048 1408506 368 47 564 75 0.0 Metagenome 3300040402 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Moab, Southern Rockies & Colorado Plateau, UT, USA - MOAB_045-M-20170523-COMP-DNA1 Battelle Memorial Institute 3300040402 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.24833 -109.38827 5361928 16063 26 1 46 1 0.0 Metagenome 3300040944 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P7_D5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300040944 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 726376310 1020726 171 2 257 4 SRX9635042, SRX9635041 Unrestricted 0.0 Metagenome 3300022925 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (version 2) DOE Joint Genome Institute (JGI) 3300022925 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 891854178 1695379 360 56 717 97 SRX4068470 Unrestricted 31.05 Metagenome 3300022490 *Microbiome Permanent Draft Human saliva microbial communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva microbial communities from oral cavities of IgA immunodeficiency people from Alicante, Spain - individual 3 Autonomous University of Barcelona 3300022490 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.38 -0.51 33915936 38921 33 0 34 0 0.0 Metagenome 3300005454 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_09_20cm DOE Joint Genome Institute (JGI) 3300005454 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2821016739 8607262 3069 107 5245 234 SRX2727806 Unrestricted 0.0 Metagenome 3300050045 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim1 5-9 DOE Joint Genome Institute (JGI) 3300050045 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.352987 19.047292 707074384 1104814 183 36 285 41 Restricted 12.57 Metagenome 3300005829 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC Oregon Health and Science University (OHSU) 3300005829 Metagenome Analysis unassembled released per JGI data release policy No Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Unclassified Sediment Unclassified sediment (intertidal) 46.208333 -123.6925 879642301 1757197 890 14 1703 23 0.0 Metagenome 3300030117 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_052 - TARA_R100000234 CEA Genoscope 3300030117 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -16.9534 53.9601 286434206 611355 3 1 6 6 0.0 Metagenome 3300004076 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_ThreeSqB_D2 DOE Joint Genome Institute (JGI) 3300004076 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.131752 -122.266335 599849526 1949450 806 17 1661 35 SRX7149106 Unrestricted 0.0 Metagenome 3300044699 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - S17_HLP DOE Joint Genome Institute (JGI) 3300044699 Metagenome Analysis Flye v. 2.7 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified Soil 41.896 -89.3636 2421550127 3673644 384 31 389 38 SRX9382780 Unrestricted 45.71 Metagenome 3300056679 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.3W.12 SIP fraction DOE Joint Genome Institute (JGI) 3300056679 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 159067359 274297 168 39 274 61 Unrestricted 16.14 Metagenome 3300032294 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains Ecozone, Canada - Lake 08-180 Genome Quebec 3300032294 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.956985 -79.501228 732993167 1484328 400 66 680 133 0.0 Metagenome 3300022205 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_8_1 DOE Joint Genome Institute (JGI) 3300022205 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Sediment Marine Unclassified sediment 38.03 -122.15 1368872779 1441983 285 25 469 32 SRX4055348 Unrestricted 16.0 Metagenome 3300049750 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MB5 DOE Joint Genome Institute (JGI) 3300049750 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 281174828 748351 554 14 1154 20 Unrestricted 7.74 Metagenome 3300040064 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 037_R1_022417 University of Maryland 3300040064 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.20871111 24.87694444 12830301 24695 26 5 39 7 0.0 Metagenome 3300012157 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT760_2 DOE Joint Genome Institute (JGI) 3300012157 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9227 -106.9515 178891082 412253 227 8 462 20 SRX3368953 Unrestricted 0.0 Metagenome 3300040323 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_058-O-20170718-COMP-DNA1 Battelle Memorial Institute 3300040323 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 4943845 15617 47 12 93 17 0.0 Metagenome 3300021079 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L442-9m DOE Joint Genome Institute (JGI) 3300021079 Metagenome Analysis spades v. 3.10.1 Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.775 -93.818 791799527 1497719 506 46 743 94 SRX3984572 Unrestricted 23.76 Metagenome 3300007320 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158479027 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007320 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 188341361 279643 171 0 202 0 0.0 Metagenome 3300031930 *Microbiome Permanent Draft Microbial communities from the deep biosphere Deep subsurface sediment microbial communities from Tonga Trench, Pacific Ocean - 60_70 re-assembly Marine Biological Laboratory 3300031930 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Sediment Geologic Unclassified Deep subsurface sediment -16.64175 -172.200017 1294872 4920 6 3 12 8 SRX2056175, SRX2056176 0.0 Metagenome 3300048444 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_151028.NP2 DOE Joint Genome Institute (JGI) 3300048444 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 859801366 2040837 588 126 964 207 Unrestricted 12.77 Metagenome 3300027336 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepC_8d DOE Joint Genome Institute (JGI) 3300027336 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 196990886 336032 99 2 128 9 SRX5245291 Unrestricted 17.52 Metagenome 3300048902 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Soil microbial communities from greenhouse in W.K. Kellogg Biological Station, Michigan, USA - KLW soil_6b N15 DOE Joint Genome Institute (JGI) 3300048902 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Environmental Terrestrial Unclassified Soil Unclassified Soil 42.40581 -85.40228 1506220433 2542029 523 17 920 42 Unrestricted 13.42 Metagenome 3300070388 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_033-M-20180709-COMP-DNA1 3300070388 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 36146447 110382 89 5 155 6 0.0 Metagenome 3300055457 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.19W.9 SIP fraction DOE Joint Genome Institute (JGI) 3300055457 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 237520051 407460 63 6 111 8 Unrestricted 18.22 Metagenome 3300025526 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Mar_CSW14AB (SPAdes) DOE Joint Genome Institute (JGI) 3300025526 Metagenome Analysis spades v. 3.11.1 Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 233383189 387619 164 16 252 30 SRX3321594 Unrestricted 0.0 Metagenome 3300013764 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A28_35cm_6M University of Tennessee 3300013764 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 339382398 757682 82 1 165 3 SRX710592 0.0 Metagenome 3300060337 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 307-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300060337 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9062 -107.0288 589087041 1414064 276 70 538 117 Unrestricted 0.0 Metagenome 3300053780 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT_PTT1_JUN19_120cm DOE Joint Genome Institute (JGI) 3300053780 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9883 -108.4003 1936770928 4311594 1664 21 2946 29 Restricted 0.0 Metagenome 3300044210 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - LIV13-9-6-19 DOE Joint Genome Institute (JGI) 3300044210 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.3608 -120.7236 286108382 788132 467 35 872 48 Restricted 6.58 Metagenome 3300005530 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG DOE Joint Genome Institute (JGI) 3300005530 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn rhizosphere 42.3948 -85.3738 4969523751 12780905 4016 277 6730 497 SRX2740404 Unrestricted 0.0 Metagenome 3300043666 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 395-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043666 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9887 -107.0642 893221922 2237425 512 34 992 74 Unrestricted 7.52 Metagenome 3300043139 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - WH_101317 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043139 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.8725 -89.3578 26500597 76108 110 17 181 33 SRX9382428 Unrestricted 18.78 Metagenome 3300045602 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_2_F DOE Joint Genome Institute (JGI) 3300045602 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 187392452 218849 100 1 100 2 Unrestricted 136.44 Metagenome 3300003588 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_100m_DNA DOE Joint Genome Institute (JGI) 3300003588 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 247521920 525000 269 10 464 19 Unrestricted 0.0 Metagenome 3300026550 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_05_20cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026550 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 1343537144 2442684 710 22 1201 30 SRX2728001 Unrestricted 0.0 Metagenome 3300042604 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Neocapritermes taracua from Petit Saut, French Guiana, France - Nct323 Eurofins MWG Operon 3300042604 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 5.071383 -53.039049 490045898 554269 133 5 258 5 0.0 Metagenome 3300019877 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - H2m1 DOE Joint Genome Institute (JGI) 3300019877 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.987 -107.0038 275654712 596744 245 16 524 27 SRX3948169, SRX3948170 Unrestricted 0.0 Metagenome 3300056733 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.18C.11 SIP fraction DOE Joint Genome Institute (JGI) 3300056733 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 193549810 351774 139 14 264 23 Unrestricted 13.69 Metagenome 3300070767 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_004-M-20190614-COMP-DNA1 3300070767 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 316538 1042 9 0 15 0 0.0 Metagenome 3300042220 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D168_2 DOE Joint Genome Institute (JGI) 3300042220 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 135481939 178026 75 5 104 11 Unrestricted 76.96 Metagenome 3300009744 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day9 DOE Joint Genome Institute (JGI) 3300009744 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 39.849 -81.036 33123761 61354 88 1 195 1 SRX2996506 Unrestricted 0.0 Metagenome 3300039391 *Microbiome Permanent Draft Soil microbial communities from the crude oil polluted soil from Bobrka and the control soil from Bialowieza national park, Poland Contaminated soil microbial communities from oil field in Bobrka, Poland - X1A3 v. 2 Illumina 3300039391 Metagenome Analysis metaSPAdes v. 1.2.4 released by JGI data releasing policy No Yes valeria.imperato@uhasselt.be Valeria Imperato No Environmental Terrestrial Unclassified Soil Oil-contaminated Contaminated soil 49.62633083 21.69249723 4818817 13760 13 4 27 6 0.0 Metagenome 3300004151 *Microbiome Permanent Draft Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - High cellulose week 5 DOE Joint Genome Institute (JGI) 3300004151 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes rallen2@staffmail.ed.ac.uk Rosalind Allen No Environmental Aquatic Pond Freshwater Sediment Freshwater 55.9225 -3.1724 1532238902 4147399 1580 70 3400 122 SRX7158195 Unrestricted 0.0 Metagenome 3300049510 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MC39 DOE Joint Genome Institute (JGI) 3300049510 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 7371691 18451 42 0 87 0 Unrestricted 33.77 Metagenome 3300045440 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Tennessee River, Kentucky, USA - NASQAN2011_028 DOE Joint Genome Institute (JGI) 3300045440 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 37.0378 -88.5294 479291908 1098336 358 150 586 237 Unrestricted 0.0 Metagenome 3300065659 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 828b in Grassy Lake, Alberta, Canada - S00JY_0377 Microbiome Insights 3300065659 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.425784 -111.460018 100807677 155881 58 1 104 0 0.0 Metagenome 3300020374 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618) CEA Genoscope 3300020374 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 33.93 32.7322 690757982 1584303 360 6 590 13 0.0 Metagenome 3300041555 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_283 MetaG AgResearch, New Zealand, Mosgeil 3300041555 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 858187929 1833535 390 20 1122 24 0.0 Metagenome 3300042900 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Jun2015-rr0370 DOE Joint Genome Institute (JGI) 3300042900 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 549145758 818183 147 16 185 26 Unrestricted 20.68 Metagenome 3300008534 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158802708 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008534 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 77610498 111075 66 2 89 1 0.0 Metagenome 3300069456 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_007-O-20170612-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069456 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 291896829 803960 263 51 585 102 0.0 Metagenome 3300003171 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from California, USA - DAQCA-005 DOE Joint Genome Institute (JGI) 3300003171 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 8784446 28194 47 12 45 15 SRX2770421 Unrestricted 0.0 Metagenome 3300000950 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0441 DOE Joint Genome Institute (JGI) 3300000950 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -22.97 -36.95 39450633 98715 78 0 133 0 SRX1983027 Unrestricted 0.0 Metagenome 3300007643 *Microbiome Finished Biofilm microbial communities from a marine aquaculture plant in North Sea, Germany Biofilm microbial communities from a marine aquaculture plant in North Sea, Germany Max Planck Institute for Evolutionary Biology 3300007643 Metagenome Analysis QUAST released per JGI data release policy No Yes wolfgang.streit@uni-hamburg.de Wolfgang Streit No Environmental Aquatic Unclassified Aquaculture Unclassified biofilm marine aquaculture plant 54.13 8.8 1479598893 2424290 1307 97 1969 158 0.0 Metagenome 3300036381 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T-25.r1 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036381 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 116912943 217780 86 12 150 24 SRX4549819, SRX7705818 Unrestricted 0.0 Metagenome 3300024915 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 99_LOW12 (SPAdes) DOE Joint Genome Institute (JGI) 3300024915 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 41751154 62328 24 0 30 0 SRX2721175 Unrestricted 0.0 Metagenome 3300040640 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_001-O-20170717-COMP-DNA1 Battelle Memorial Institute 3300040640 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 2342043 7416 23 9 40 9 0.0 Metagenome 3300017728 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 42 SPOT_SRF_2013-04-24 DOE Joint Genome Institute (JGI) 3300017728 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 310588633 723437 47 68 91 121 SRX7207516, SRX7207517 Unrestricted 0.0 Metagenome 3300060459 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210610_14_13 DOE Joint Genome Institute (JGI) 3300060459 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 565302981 842655 264 235 353 316 Unrestricted 43.8 Metagenome 3300007196 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human saliva microbial communities from NIH, USA - visit 1, subject 763961826 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007196 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human 39.0042816 -77.1012173 110290466 175728 116 0 157 0 0.0 Metagenome 3300035645 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS56_18 University of Hohenheim 3300035645 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 138809973 186321 122 0 179 0 0.0 Metagenome 3300059747 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1553A-3 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059747 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.1867 -123.8835 63711829 148763 169 54 273 82 SRX2753730 Unrestricted 0.0 Metagenome 3300004282 *Microbiome Permanent Draft Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment DOE Joint Genome Institute (JGI) 3300004282 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes rallen2@staffmail.ed.ac.uk Rosalind Allen No Environmental Aquatic Pond Freshwater Sediment Freshwater 55.9232 -3.1878 4428151954 13483359 3036 128 6944 281 SRX7158123 Unrestricted 0.0 Metagenome 3300024048 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #655 DOE Joint Genome Institute (JGI) 3300024048 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 185710747 330409 111 0 190 1 SRX4397133 Unrestricted 19.14 Metagenome 3300008261 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA University of Michigan 3300008261 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7026 -83.236 8.334 752092151 1267407 512 92 709 138 0.0 Metagenome 3300044855 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME30Aug2015-rr0910 DOE Joint Genome Institute (JGI) 3300044855 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 345100368 534850 223 39 338 80 Unrestricted 13.04 Metagenome 3300070789 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_034-O-20200106-COMP-DNA1 3300070789 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 24982064 71375 43 11 85 11 0.0 Metagenome 3300027813 *Microbiome Permanent Draft Marine microbial communities from western Arctic Ocean Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027813 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh Yes 30271971 Environmental Aquatic Oceanic Marine Unclassified Marine 73.2247 -150.2247 1071949917 2215651 380 170 546 280 SRX2997165 Unrestricted 0.0 Metagenome 3300024968 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 31_HOW6 (SPAdes) DOE Joint Genome Institute (JGI) 3300024968 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 116920190 194898 46 4 58 5 SRX2720209 Unrestricted 0.0 Metagenome 3300008450 *Microbiome Permanent Draft Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs University of Michigan 3300008450 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes duhaimem@umich.edu Melissa Duhaime No Environmental Aquatic Lake Freshwater Unclassified freshwater lake 41.7032 -83.2575 481655654 1023990 1 0 3 1 0.0 Metagenome 3300035057 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - C7-0 Autonomous University of Barcelona 3300035057 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 98482764 405991 1181 0 2151 0 0.0 Metagenome 3300026710 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine sediment microbial community from La Parguera, Puerto Rico - PR Tt Sediment 3 (SPAdes) DOE Joint Genome Institute (JGI) 3300026710 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Intertidal zone Marine Sediment Enviromental 17.96725 -67.0188733 22979519 53681 43 1 67 2 SRX3303108 Unrestricted 0.0 Metagenome 3300028492 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen10, Rep 1 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028492 Metagenome Analysis spades v. 3.11.1 No Yes xpeng@seoe.sc.edu; momalley@engineering.ucsb.edu Xuefeng (Nick) Peng; Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 17507613 18629 29 0 27 0 SRX5645627 Unrestricted 0.0 Metagenome 3300038945 *Microbiome Permanent Draft Marine sediment microbial communities from Mesquite Bay, Texas, USA Marine sediment microbial communities from Mesquite Bay, Texas, USA - MB1D 3-6 cm Michigan State University 3300038945 Metagenome Analysis MegaHit v. 1.1.1 released by JGI data releasing policy No Yes acidophile@gmail.com Brett Baker No Environmental Aquatic Sediment Marine Unclassified marine sediment 28.147 -96.8455 727913041 768153 95 1 84 1 0.0 Metagenome 3300030506 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_1 DOE Joint Genome Institute (JGI) 3300030506 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 912623511 1869343 581 187 831 301 SRX5799207 Unrestricted 10.67 Metagenome 3300050279 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_35 DOE Joint Genome Institute (JGI) 3300050279 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.492 160.907 359554987 517378 131 5 185 8 SRX18236972 Restricted 48.66 Metagenome 3300021370 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2016_1, permeate Toyama Prefectural University 3300021370 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Unclassified marine 36.96723 137.36471 87366339 204752 31 10 54 15 0.0 Metagenome 3300048935 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_4_F (version 2) DOE Joint Genome Institute (JGI) 3300048935 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 163770593 203165 113 1 124 1 Restricted 0.0 Metagenome 3300001954 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Colon, Panama - GS019 J. Craig Venter Institute (JCVI) 3300001954 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine 10.716389 -80.25445 86398015 149187 93 1 140 2 0.0 Metagenome 3300020398 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000949 (ERX555993-ERR599072) CEA Genoscope 3300020398 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -23.1719 -129.6713 994885109 2444037 658 53 1319 91 0.0 Metagenome 3300043621 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 205-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043621 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.8567 -107.0921 511678807 1393134 458 20 786 33 Unrestricted 6.78 Metagenome 3300013356 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01291 Weill Cornell Medical College 3300013356 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.81 -73.91 17384617 37050 22 0 33 0 SRX823231 0.0 Metagenome 3300025561 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Bullhead_CordC_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025561 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.003361 -122.468277 194470203 405949 208 2 395 1 SRX7142159 Unrestricted 0.0 Metagenome 3300047192 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2013 MD1-MC_30cm DOE Joint Genome Institute (JGI) 3300047192 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.2114 19.031 191205073 364844 159 3 334 5 Restricted 25.77 Metagenome 3300013648 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100648 University of Pennsylvania 3300013648 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 6756558 17786 9 0 18 0 SRX756446 0.0 Metagenome 3300011895 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00687 Weill Cornell Medical College 3300011895 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.8 -73.96 53011018 81934 23 0 42 0 SRX822654 0.0 Metagenome 3300002573 *Microbiome Permanent Draft Ridgeia piscesae microbial communities from Northeast Pacific Ocean hydrothermal vents Host-associated microbial community of the tubeworm Ridgeia piscesae from hydrothermal vents Sample -index 12 (Axial HF) Canada's Michael Smith Genome Sciences Centre 3300002573 Metagenome Analysis released per JGI data release policy No Yes maepz@hotmail.com Maeva Perez, maeva perez No Host-associated Annelida Trophosome Intracellular endosymbionts Unclassified Ridgeia piscesae 47.933376 -129.966915 271895075 677751 2 10 5 4 0.0 Metagenome 3300031393 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #648 DOE Joint Genome Institute (JGI) 3300031393 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 491935071 865689 248 24 330 49 SRX5649500 Unrestricted 42.28 Metagenome 3300069604 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Mid-Atlantic, VA, USA - BLAN_003-M-20170713-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069604 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Farm Terrestrial soil 39.06026 -78.07164 10821428 35955 50 3 110 7 0.0 Metagenome 3300039160 *Microbiome Permanent Draft Human fecal and environmental microbial communities from Peru and El Salvador Wastewater microbial communities from Lima, Peru - SW193 Washington University in St. Louis 3300039160 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27172044 Engineered WWTP Unclassified Wastewater Unclassified Wastewater -12.108 -77.056 27720771 60335 149 0 232 0 SRX1441293, SRX1441008 0.0 Metagenome 3300051665 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Lindberg, Bavaria, Germany - BW_CO_018D DOE Joint Genome Institute (JGI) 3300051665 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 49.039599 13.313165 744781387 1776791 357 37 716 68 Unrestricted 7.63 Metagenome 3300040435 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_004-M-20140117-COMP-DNA1 Argonne National Laboratory 3300040435 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 4135108 12667 35 5 66 6 ERX2133942 0.0 Metagenome 3300028381 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300028381 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 4854916066 11184874 1597 140 2993 281 SRX2785270 Unrestricted 0.0 Metagenome 3300035430 *Microbiome Permanent Draft Marine bacterial communities from Black Sea, Georgia Marine viral communities from Black Sea, Poti, Georgia - BS26 NCDC Lugar Center, Georgia 3300035430 Metagenome Analysis Velvet v. 3.3 released by JGI data releasing policy No Yes iakusradze@pha.ge Ia Kusradze No Environmental Aquatic Unclassified Marine Unclassified marine 41.6944 41.7075 29029580 37225 13 0 15 0 0.0 Metagenome 3300006254 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 706846339 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006254 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 114469468 181904 99 0 144 0 0.0 Metagenome 3300020153 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sediment microbial communities from Great Boiling Springs, Gerlach, Nevada, United States - GBS 60_MetaG DOE Joint Genome Institute (JGI) 3300020153 Metagenome Analysis spades v. 3.10.1 Yes Yes rstepanauskas@bigelow.org; brian.hedlund@unlv.edu Ramunas Stepanauskas; Brian Hedlund Yes 31333598 Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 40.6614 -119.3661 461589717 739464 310 2 396 1 SRX3998621 Unrestricted 48.28 Metagenome 3300026065 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLB_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026065 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.224518 -122.019257 65307270 178665 149 3 282 1 SRX7187068 Unrestricted 0.0 Metagenome 3300031158 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_1 DOE Joint Genome Institute (JGI) 3300031158 Metagenome Analysis spades v. 3.12.0 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 105122402 144538 127 0 164 0 SRX5661305 Unrestricted 151.38 Metagenome 3300033488 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_C DOE Joint Genome Institute (JGI) 3300033488 Metagenome Analysis spades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified soil 41.3778 -82.5111 3240239419 8352670 2226 26 4227 66 SRX7583937 Unrestricted 0.0 Metagenome 3300026018 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026018 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.04565 -121.866287 87424137 233547 120 0 215 1 SRX7180772 Unrestricted 0.0 Metagenome 3300033991 *Microbiome Permanent Draft Extreme environments viral communities from various locations Sediment microbial communities from Lake Vrana, Zadar, Croatia - 4 bact DOE Joint Genome Institute (JGI) 3300033991 Metagenome Analysis spades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Lake Freshwater Sediment sediment 43.9359 15.5428 773044202 1517724 610 4 1037 1 SRX7621503 Unrestricted 10.5 Metagenome 3300026945 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 55 (SPAdes) DOE Joint Genome Institute (JGI) 3300026945 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 80633861 195895 97 0 196 0 SRX4340981 Unrestricted 0.0 Metagenome 3300036492 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C5-3B DOE Joint Genome Institute (JGI) 3300036492 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 202135965 611760 369 7 668 9 SRX8793702 Unrestricted 5.12 Metagenome 3300014595 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01351 Weill Cornell Medical College 3300014595 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.84 -73.83 21328569 29983 17 0 24 0 SRX823291 0.0 Metagenome 7000000036 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2 of subject 765074482 replicate 2 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000036 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Ivanova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 144433271 248313 0 0 0 0 0.0 Metagenome 3300038710 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample09 King Abdulaziz City for Science and Technology (KACST) 3300038710 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 17.59 39.47 55108052 113329 53 0 104 0 SRX1097618 0.0 Metagenome 3300011746 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01110 Weill Cornell Medical College 3300011746 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.66 -73.91 17804363 26071 6 0 13 0 SRX823065 0.0 Metagenome 3300025234 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0327 (SPAdes) DOE Joint Genome Institute (JGI) 3300025234 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -9.12 -30.19 92228541 182749 103 5 172 3 SRX1983268 Unrestricted 0.0 Metagenome 3300007029 *Microbiome Permanent Draft Non-marine hypersaline water viral communities from Salinas de Anana, Spain Non-marine hypersaline water viral communities from A?ana, Logro?o,Spain - Vir_A?ana_3_PRE University of Alicante 3300007029 Metagenome Analysis IDBA 1.1.1 PRE correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified hypersaline water 42.80111387 -2.985507 31953569 92554 4 1 8 0 0.0 Metagenome 3300029845 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35990 Beijing Genomics Institute (BGI) 3300029845 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 239905199 319070 186 0 290 0 0.0 Metagenome 3300009409 *Microbiome Permanent Draft Marine microbial communities from western Arctic Ocean Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 DOE Joint Genome Institute (JGI) 3300009409 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh Yes 30271971 Environmental Aquatic Oceanic Marine Unclassified Marine 73.2247 -150.2247 2078269986 4055667 1396 228 2230 391 SRX2997167 Unrestricted 0.0 Metagenome 3300026786 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A5a-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300026786 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 26728324 86545 114 4 195 5 SRX1991141 Unrestricted 0.0 Metagenome 3300025013 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado, USA - Groundwater B2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025013 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 26083755 Environmental Terrestrial Unclassified Soil Unclassified Soil 39.53 -107.78 360247615 595819 229 2 351 4 SRX1668032, SRX764825 Unrestricted 0.0 Metagenome 3300011985 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S12-01-D University of California, Los Angeles 3300011985 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 217094472 339991 191 1 272 2 SRX862068 0.0 Metagenome 7000000691 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 159247771 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000691 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 3311346 3209 0 0 0 0 0.0 Metagenome 3300008226 *Microbiome Permanent Draft Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico and Hudson Canyon, USA Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM9C Gulf of Mexico DOE Joint Genome Institute (JGI) 3300008226 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mcredmond@uncc.edu Molly C. Redmond No Environmental Aquatic Cold seeps Marine Unclassified Methane seep mesocosm 27.37 -90.57 1058818894 1846540 1545 1 2131 1 Unrestricted 0.0 Metagenome 3300005606 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV84 DOE Joint Genome Institute (JGI) 3300005606 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Unclassified Marine Unclassified Marine 784454676 2305798 808 48 1308 104 SRX2781860 Unrestricted 0.0 Metagenome 3300027144 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_0h DOE Joint Genome Institute (JGI) 3300027144 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 134544253 266347 94 8 160 16 SRX5245218 Unrestricted 19.4 Metagenome 3300037857 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - Pt-25 DOE Joint Genome Institute (JGI) 3300037857 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 116301750 143665 37 4 45 3 SRX9140393 Unrestricted 80.2 Metagenome 3300041060 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - T3D8 IDBA-UD 100x Baseclear 3300041060 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 152441355 211293 149 7 252 10 0.0 Metagenome 3300032278 *Microbiome Permanent Draft Comprehensive metagenome and single cell genome sequencing from the open ocean community of North Pacfic Subtropical Gyre, Station ALOHA Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG DOE Joint Genome Institute (JGI) 3300032278 Metagenome Analysis spades v. 3.13.0 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Unclassified Seawater 22.7719 -158.0 4610847336 10403085 2424 848 3717 1341 SRX5781934 Unrestricted 12.76 Metagenome 3300028230 *Microbiome Permanent Draft Utah desert microbiome from environmental samples near Hanksville, Utah, USA Rock biofilm microbial communities from Utah desert near Hanksville, Utah, USA - E3301 McGill University 3300028230 Metagenome Analysis canu v. 1.7 released by Catherine Maggiori No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Terrestrial Unclassified Soil Desert Rock biofilm 38.41714146 -110.78530232 162281587 256612 292 0 429 0 0.0 Metagenome 3300040589 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Jones Ecological Research Center, Southeast, GA, USA - JERC_003-M-20170726-COMP-DNA1 Battelle Memorial Institute 3300040589 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.19484 -84.46861 1881630 5975 32 5 44 11 0.0 Metagenome 3300003662 *Microbiome Permanent Draft Nitrogen contaminated groundwater microbial communities from Cape Cod, Massachusetts, USA Nitrogen contaminated groundwater microbial communities from Cape Cod, Massachusetts, USA - NH4 Zone 3300003662 Metagenome Analysis Unknown released by JGI data releasing policy No Yes cbuckner@mpi-bremen.de Caroline Buckner No Environmental Aquatic Groundwater Freshwater Contaminated Nitrogen contaminated groundwater 41.765 -70.3627 0 0 0 0 0 0 0.0 Metagenome 7000000227 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 765640925 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000227 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 3811937 6915 0 0 0 0 SRX025186 0.0 Metagenome 3300041940 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Bulk soil microbial community from Lincoln, Canterbury, New Zealand - BS-UN_55 MetaG AgResearch, New Zealand, Mosgeil 3300041940 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Environmental Terrestrial Unclassified Soil Agricultural land Dairy farm pasture soil -43.648506 172.343549 1057051551 2519961 329 18 997 27 0.0 Metagenome 3300038434 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18B_6_11_4 mgh University of Alberta 3300038434 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 30126437 40541 26 1 43 0 0.0 Metagenome 3300050312 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_76 DOE Joint Genome Institute (JGI) 3300050312 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -76.91 160.935 817185510 1221099 185 35 222 44 SRX18235927 Restricted 18.36 Metagenome 3300049058 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - A4_A_BS (version 2) DOE Joint Genome Institute (JGI) 3300049058 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 144160547 334683 425 15 925 29 Unrestricted 0.0 Metagenome 3300000545 *Microbiome Permanent Draft Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNX_Illumina_Assembled Beijing Genomics Institute (BGI), Lifesequencing S.L. 3300000545 Metagenome Analysis Flash v1.0.3; SOAPdenovo released per JGI data release policy No Yes manuel.fernandez@eez.csic.es Fernandez-Lopez, Manuel No Host-associated Plants Rhizosphere Roots Soil Quercus rhizosphere 36.965667 -3.429194 84476983 290469 749 106 1414 188 0.0 Metagenome 3300040567 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 041B_R1 University of Maryland 3300040567 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 61.07971944 25.69931111 2303192 6297 8 3 23 6 0.0 Metagenome 3300053088 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere DOE Joint Genome Institute (JGI) 3300053088 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.587879 -123.193993 946547827 1953182 460 106 722 177 Unrestricted 12.5 Metagenome 3300001650 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF046 DOE Joint Genome Institute (JGI) 3300001650 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 4676090 14639 25 1 66 5 SRX2014384 Unrestricted 0.0 Metagenome 3300046375 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA023-BCT DOE Joint Genome Institute (JGI) 3300046375 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6779 -83.4786 505168420 1248424 271 37 503 55 Unrestricted 9.56 Metagenome 3300009615 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_4_100 DOE Joint Genome Institute (JGI) 3300009615 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 296463152 502252 175 0 271 0 SRX3002039 Unrestricted 0.0 Metagenome 3300049586 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 DOE Joint Genome Institute (JGI) 3300049586 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.407926 -82.180036 1765073939 2859324 617 33 1025 53 Unrestricted 15.97 Metagenome 3300029796 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 064_3_9_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029796 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 275015227 395389 341 3 427 1 0.0 Metagenome 3300069220 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Caribou Creek Watershed, Alaska, USA - BONA_006-O-20210707-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069220 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Terrestrial soil 65.176107 -147.544089 1181748823 2017508 310 194 491 289 0.0 Metagenome 3300011659 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00970 Weill Cornell Medical College 3300011659 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.82 27786070 47037 25 2 25 2 SRX822932 0.0 Metagenome 3300009668 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC073_MetaG DOE Joint Genome Institute (JGI) 3300009668 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 37.8 -122.27 726176911 1366082 866 5 1294 14 SRX2157904 Unrestricted 0.0 Metagenome 3300027211 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1449B-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027211 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2327 -123.9168 123717165 266268 133 8 207 5 SRX2753614 Unrestricted 0.0 Metagenome 3300042456 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME19Jul2015-rr0838 DOE Joint Genome Institute (JGI) 3300042456 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 703571158 1154889 344 104 486 139 Unrestricted 17.0 Metagenome 3300070982 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_003-M-20180730-COMP-DNA1 3300070982 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 35076328 101467 97 36 196 44 0.0 Metagenome 3300000406 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from the University of Liverpool 454_50ng_Nextera University of Liverpool 3300000406 Metagenome Analysis released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 0 0 0 0 0 0 0.0 Metagenome 3300043052 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5WT15 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043052 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 4568352 13610 45 6 71 10 SRX8379537 Unrestricted 31.08 Metagenome 3300038550 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Sediment microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_North_4 DOE Joint Genome Institute (JGI) 3300038550 Metagenome Analysis metaspades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Wetlands Marine Sediment sediment 26.6774 -80.3753 1460048590 2351423 736 9 1209 13 SRX9406124 Unrestricted 13.13 Metagenome 3300050675 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_2B2_100118_1910 DOE Joint Genome Institute (JGI) 3300050675 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 820288731 1314497 333 106 594 146 Unrestricted 24.73 Metagenome 3300047488 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lake Yojoa, Honduras - Yojoa_01_2020_E_hypo (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047488 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Lake Freshwater Unclassified Freshwater 14.8744 -87.9835 760618836 1195749 226 93 418 143 Unrestricted 0.0 Metagenome 3300070578 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_008-M-20200806-COMP-DNA1 Battelle Memorial Institute 3300070578 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 46.256193 -89.515052 5.05-5.33 5566918 17909 43 4 66 8 0.0 Metagenome 3300014510 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 51_B Beijing Genomics Institute (BGI) 3300014510 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 17341847 20770 13 0 13 0 ERX491165 0.0 Metagenome 3300038795 *Microbiome Finished Crude oil contaminated agricultural soil mecrobial communities from various regions in India Soil microbial community of crude oil contaminated soil of Bongaigaon region, Assam, India - B1 Eurofins Genomics India Pvt Ltd. 3300038795 Metagenome Analysis CLC Genomic workbench v. 9.5.2 released by JGI data releasing policy No Yes nanditadas753@gmail.com nandita das No Environmental Terrestrial Unclassified Soil Oil-contaminated soil 26.81482 94.52614 198832343 336779 50 4 86 8 0.0 Metagenome 3300028704 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379 DOE Joint Genome Institute (JGI) 3300028704 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92048757 -106.94878552 375303690 1051645 406 29 740 57 SRX5355418 Unrestricted 10.54 Metagenome 3300039198 *Microbiome Permanent Draft Freshwater sediment microbial communities from Alaska Lake sediment microbial communtites from St. Paul Island, Alaska - PH170_481 University of California, Santa Cruz 3300039198 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Sediment Lake sediment 57.18 -170.25 2465617 7502 4 0 12 0 0.0 Metagenome 3300027808 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027808 Metagenome Analysis spades v. 3.11.1 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 792741960 1880110 317 55 505 101 SRX2564972 Unrestricted 0.0 Metagenome 3300010031 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from La Bocana,Puerto Morelos, Mexico - Diploria C A metagenome DOE Joint Genome Institute (JGI) 3300010031 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes momedinamunoz@gmail.com Medina Medina No Host-associated Invertebrates Coral Cnidaria Unclassified Coral 20.8777 -86.843 1098692126 1578656 9 134 56 211 SRX2525668 Unrestricted 0.0 Metagenome 3300012175 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT399_2 DOE Joint Genome Institute (JGI) 3300012175 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8894 -106.9084 247633801 550275 274 31 543 57 SRX3368482 Unrestricted 0.0 Metagenome 3300003378 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A2-12 DOE Joint Genome Institute (JGI) 3300003378 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 595894 2022 26 1 39 3 SRX2576251 Unrestricted 0.0 Metagenome 3300045239 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_5_F DOE Joint Genome Institute (JGI) 3300045239 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 196703198 235690 114 1 146 2 Unrestricted 115.97 Metagenome 3300059601 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-070-2021 DOE Joint Genome Institute (JGI) 3300059601 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes viola.krukenberg@montana.edu Viola Krukenberg No Environmental Aquatic Sediment Thermal springs Unclassified Hot spring sediment 44.56713 -110.80562 631168964 656333 278 0 263 0 Unrestricted 21.95 Metagenome 3300021516 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L626-11m DOE Joint Genome Institute (JGI) 3300021516 Metagenome Analysis spades v. 3.11.1-check Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.753 -93.798 409918636 941876 353 65 521 118 SRX3984561 Unrestricted 31.79 Metagenome 3300006984 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Final time point T34 (2) (BES) benzoate enrichments of Methanogenic microbial communities using Athabasca oil sands as inoculum Shell Corporation 3300006984 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 33082120 60351 42 0 61 0 0.0 Metagenome 3300044956 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Towuti Lake, South Sulawesi, Indonesia - Towuti_10m_2014 DOE Joint Genome Institute (JGI) 3300044956 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.7 121.4 637959512 1153731 383 93 607 116 Unrestricted 26.02 Metagenome 3300020360 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000459 (ERX555918-ERR599165) CEA Genoscope 3300020360 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -20.3976 -3.2009 432511887 1095234 368 97 560 204 0.0 Metagenome 3300029021 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 503_12M Beijing Genomics Institute (BGI) 3300029021 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 113394517 139295 81 1 136 0 ERX491147 0.0 Metagenome 3300019855 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Sao Paulo, Brazil - ZCI5 Center for Advanced Technologies in Genomics, Sao Paulo University 3300019855 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Engineered Solid waste Composting Zoo waste Unclassified compost -23.651072 -46.620675 372529 991 2 1 5 0 0.0 Metagenome 3300037297 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0817M20re DOE Joint Genome Institute (JGI) 3300037297 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0387 482160210 797331 317 2 571 1 SRX9149533 Unrestricted 12.04 Metagenome 3300004193 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 67_HOW9 DOE Joint Genome Institute (JGI) 3300004193 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 103081997 222761 97 7 154 7 SRX2720763 Unrestricted 0.0 Metagenome 3300038846 *Microbiome Permanent Draft Activated sludge microbial communities from anaerobic digester at WWTP from various locations in Denmark Activated sludge microbial communities from anaerobic digester at WWTP in Viborg, Denmark - SA-RHK-528 Aalborg University 3300038846 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified Activated sludge 56.425573 9.455083 71015580 135137 86 2 126 4 0.0 Metagenome 3300011810 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00733 Weill Cornell Medical College 3300011810 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.76 -73.98 29512950 43450 26 0 27 0 SRX822700 0.0 Metagenome 3300001284 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN106 DOE Joint Genome Institute (JGI) 3300001284 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 39.23550963 -121.2836963 98179 301 29 0 48 1 SRX2552116, SRX2552117 Unrestricted 0.0 Metagenome 3300043731 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - FT_A80 DOE Joint Genome Institute (JGI) 3300043731 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.1399 -62.9002 883743260 2406200 471 14 953 17 Unrestricted 9.03 Metagenome 3300009994 *Microbiome Permanent Draft Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_171 metaG DOE Joint Genome Institute (JGI) 3300009994 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes esinger@lbl.gov; twoyke@lbl.gov Esther Singer; Tanja Woyke No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass associated 30.387 -97.7301 73412822 131862 27 70 54 103 SRX3203292 Unrestricted 0.0 Metagenome 3300012083 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC084 MetaG DOE Joint Genome Institute (JGI) 3300012083 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 34.9174 -79.3535 221435613 407131 187 42 320 77 SRX3539728 Unrestricted 0.0 Metagenome 3300052320 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from White River, Indiana, USA - NASQAN2011_168 DOE Joint Genome Institute (JGI) 3300052320 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.4897 -87.55 44365428 135653 210 27 329 54 Restricted 0.0 Metagenome 3300037621 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Seawater microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR10_8 DOE Joint Genome Institute (JGI) 3300037621 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Unclassified seawater 47.8874 -128.6486 1428543373 3263233 507 555 905 846 SRX9096390 Unrestricted 17.01 Metagenome 3300001819 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM37, ROCA_DNA077_2.0um_10k 3300001819 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River plume Marine Plankton Marine plankton 4.8818 -51.3608 6884006 16475 15 22 41 29 0.0 Metagenome 3300003779 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus triangulatus BAHAMAS.1 DOE Joint Genome Institute (JGI) 3300003779 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 82054467 218301 5 2 7 3 SRX3340582 Unrestricted 0.0 Metagenome 3300036571 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C3-9B DOE Joint Genome Institute (JGI) 3300036571 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 70950388 226231 196 6 350 6 SRX8818120 Unrestricted 4.28 Metagenome 3300014750 *Microbiome Permanent Draft Human fecal microbial community of Hadza hunter-gatherer and regular subjects from Tanzania and Italy Human fecal microbial community of Hadza hunter-gatherer populations from Tanzania - 10019 University of Bologna 3300014750 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal -3.6347588 35.0828588 55750902 97274 35 0 91 1 0.0 Metagenome 3300041577 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_490 MetaG AgResearch, New Zealand, Mosgeil 3300041577 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 2464991069 5263496 495 44 1471 73 0.0 Metagenome 3300012839 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched mosquito-associated microbial communities from UW Madison campus, WI, USA - HID1973M_E11 MG DOE Joint Genome Institute (JGI) 3300012839 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 104746685 136958 109 0 143 0 SRX3564676 Unrestricted 0.0 Metagenome 3300013094 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES058 metaG DOE Joint Genome Institute (JGI) 3300013094 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 46.041 -89.686 881037342 1589517 472 153 772 215 SRX3566333 Unrestricted 17.12 Metagenome 3300019699 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FRC_1-2_MG DOE Joint Genome Institute (JGI) 3300019699 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 95868835 239473 226 20 418 29 SRX3983242 Unrestricted 3.54 Metagenome 2166559017 *Microbiome Permanent Draft Microbial communities from the Atlantic Ocean and human feces from France, grouped together for a comparative study Marine microbial communities from the Atlantic Ocean, for comparison studies - Ocean5 (GOS 4441573) 454 Life Sciences 2166559017 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Aquatic Oceanic Marine Unclassified Environmental and host-associated 39.0042816 -77.1012173 136906788 269615 216 9 342 13 0.0 Metagenome 3300006894 *Microbiome Permanent Draft Agricultural soil microbial communities from Utah and Georgia to study Nitrogen management Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control DOE Joint Genome Institute (JGI) 3300006894 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jeanette.norton@usu.edu Jeanette Norton No Environmental Terrestrial Agricultural land Soil Unclassified Agricultural soil 41.7655 -111.8143 2119667555 4976031 2124 83 3631 141 SRX2922492 Unrestricted 0.0 Metagenome 3300036449 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C6-3B DOE Joint Genome Institute (JGI) 3300036449 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 89642234 284674 209 9 354 7 SRX8803637 Unrestricted 4.5 Metagenome 3300026127 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_D1_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026127 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Terrestrial Wetlands Soil Unclassified Soil 37.4965 -122.1329 226995202 508719 252 4 449 7 SRX2523772 Unrestricted 0.0 Metagenome 3300070252 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Virginia, USA - BLAN_031-M-20200713-COMP-DNA1 3300070252 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Agricultural land Soil 11929356 38625 57 4 125 5 0.0 Metagenome 2170459015 *Microbiome Permanent Draft Switchgrass, maize and mischanthus litter microbial communities from University of Illinois Energy Farm, Urbana, IL Litter degradation PV4 University of Illinois, Urbana-Champaign 2170459015 Metagenome Analysis released per JGI data release policy No Yes lixz@illinois.edu Xiangzhen Li No Engineered Solid waste Composting Grass Unclassified Switchgrass, maize and mischanthus litter 40.1097 -88.2041 186422692 454195 155 12 324 29 0.0 Metagenome 3300013770 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A15_5cm_18M University of Tennessee 3300013770 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 385693209 1058656 141 4 308 4 SRX710622 0.0 Metagenome 3300000216 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 53 01/11/11 150m DOE Joint Genome Institute (JGI) 3300000216 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 206743907 388322 148 1 277 3 Unrestricted 0.0 Metagenome 3300002830 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A5a-10 DOE Joint Genome Institute (JGI) 3300002830 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 299527 1031 17 0 34 0 SRX1991127 Unrestricted 0.0 Metagenome 3300007073 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 765013792 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007073 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 4513781 11847 4 0 8 2 SRX024102 0.0 Metagenome 3300009690 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC034_MetaG DOE Joint Genome Institute (JGI) 3300009690 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 39.84 -89.0 1120947625 1960630 937 3 1477 8 SRX2338787 Unrestricted 0.0 Metagenome 3300022826 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1331 DOE Joint Genome Institute (JGI) 3300022826 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 78299135 147029 68 0 106 0 SRX4397472 Unrestricted 32.47 Metagenome 3300016667 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water catchment in Singapore - WC_Site 1b, Oct Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016667 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 1.35 103.87 87188351 119247 17 12 26 11 0.0 Metagenome 3300035183 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Filamentous streamer microbial communities from Yellowstone Lake, YNP, Wyoming, USA - WestThumb_B02_1/2 DOE Joint Genome Institute (JGI) 3300035183 Metagenome Analysis metaspades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Microbial mats filamentous streamer 44.4328 -110.5352 2024308352 3496342 1146 53 1725 86 SRX8287278 Unrestricted 25.95 Metagenome 3300027401 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgLAC (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027401 Metagenome Analysis spades v. 3.11.1 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 130751397 391862 257 6 483 8 SRX2521238 Unrestricted 0.0 Metagenome 3300070849 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_044-O-20190806-COMP-DNA1 3300070849 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 12108500 37215 46 4 87 3 0.0 Metagenome 3300024333 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Lake Matano, South Sulawesi, Indonesia - Watercolumn_Matano_2014_110_MG DOE Joint Genome Institute (JGI) 3300024333 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 854344518 1993090 788 22 1420 38 SRX4481743 Unrestricted 22.86 Metagenome 3300035075 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 28_7.5_M_1 DOE Joint Genome Institute (JGI) 3300035075 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1863 -2.2145 798145648 2143733 711 18 1339 37 SRX8234986 Unrestricted 7.19 Metagenome 3300009884 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA8 University of New South Wales 3300009884 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 29031959 43771 21 2 20 5 0.0 Metagenome 3300005271 *Microbiome Permanent Draft Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan State University, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample from Bulk Soil Replicate 2: eDNA_1 v2 (version 2) DOE Joint Genome Institute (JGI) 3300005271 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes tiedjej@msu.edu James Tiedje No Environmental Terrestrial Unclassified Soil Grasslands Miscanthus rhizosphere 42.406189 -85.40016 30758892 107275 112 9 236 15 Unrestricted 0.0 Metagenome 3300056897 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M1P_30_32 DOE Joint Genome Institute (JGI) 3300056897 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0045281 -81.5645485 2143832386 3275419 1037 3 1645 1 Unrestricted 15.49 Metagenome 3300050223 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Warrenville, Illinois, USA - 61_697_IL_DR_0cm_c1_T1_18O DOE Joint Genome Institute (JGI) 3300050223 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 41.84145 -88.2298 965534764 1690477 301 2 477 3 Restricted 15.04 Metagenome 3300002529 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle CSP2_plank highO2_0.2 DOE Joint Genome Institute (JGI) 3300002529 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.534762 -107.782602 940025225 2102800 2192 42 4009 97 SRX1990985 Unrestricted 0.0 Metagenome 3300011255 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_5, permeate Toyama Prefectural University 3300011255 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Unclassified marine 37.31041 137.23108 99852466 294439 68 2 72 4 0.0 Metagenome 3300025700 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_120m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025700 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 461524645 927954 376 21 497 33 Unrestricted 0.0 Metagenome 3300020584 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000282 (ERX555983-ERR599011) CEA Genoscope 3300020584 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 14.5 70.0 138271492 378165 193 5 313 8 0.0 Metagenome 3300040794 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Salins du Lion, Vitrolles, France - D132 Genopole Toulouse Midi-Pyrenees 3300040794 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.45 5.2264 310847642 597097 272 29 496 43 0.0 Metagenome 2149837020 *Microbiome Permanent Draft Human fecal microbial communities from the University of Arizona, for HMP training Human fecal microbial communities from the University of Arizona (HMP) - Em3 Chinese National Human Genome Center, Beijing 2149837020 Metagenome Analysis released per JGI data release policy No Yes mbsulli@email.arizona.edu, mbsulli@gmail.com Matthew Sullivan No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 56.13 9.24 6001803 10129 81 5 167 0 0.0 Metagenome 3300000331 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM203 Beijing Genomics Institute (BGI), Macrogen 3300000331 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 116227644 234920 693 2 1062 3 0.0 Metagenome 3300029066 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 179_B Beijing Genomics Institute (BGI) 3300029066 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 18200467 17946 13 0 10 0 ERX490971 0.0 Metagenome 3300028571 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch201714.5m_1 DOE Joint Genome Institute (JGI) 3300028571 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater 39.9879 -1.8737 874173140 1400051 475 38 642 67 SRX5249017 Unrestricted 27.06 Metagenome 3300014058 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A3_65cm_0.25M University of Tennessee 3300014058 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 472026591 1236040 167 3 374 9 SRX710579 0.0 Metagenome 2020627000 *Microbiome Permanent Draft Wastewater viral communities from wastewater treatment facility in Singapore Viral communities in wastewater treatment process (EF) University of Illinois, Urbana-Champaign 2020627000 Metagenome Analysis Newbler assembly was used released per JGI data release policy No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Wastewater Dissolved organics (anaerobic) Nutrient removal Activated sludge Wastewater 1.332 103.756 30035399 74114 1 0 2 0 0.0 Metagenome 3300008805 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T5 (1) (Live) Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO Shell Corporation 3300008805 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl .ac.uk, ianhead@ncl .ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 114075320 372707 190 1 264 1 0.0 Metagenome 3300034419 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B5A4.3 DOE Joint Genome Institute (JGI) 3300034419 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 517466435 1364874 751 1 1474 1 SRX7658965 Unrestricted 7.31 Metagenome 3300044295 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Congo - River, Brazzaville, Congo - CONGO_063 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300044295 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater -4.3092 15.2356 394576936 1022493 466 44 777 76 Unrestricted 7.64 Metagenome 3300029946 *Microbiome Permanent Draft Baboon gut microbial communities from fecal samples in Kenya Baboon gut microbial communities from fecal samples in Kenya - M08 Duke University 3300029946 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Baboon gut 2.717 37.1 51590131 96217 93 0 144 0 SRX834632 0.0 Metagenome 3300029317 *Microbiome Permanent Draft Oil enriched seawater microbial communities from Gulf of Mexico, USA Oil enriched seawater microbial communities from Gulf of Mexico, USA - BD02T18 Lawrence Berkeley National Laboratory 3300029317 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes Yes 28652349 Environmental Aquatic Oceanic Marine Oil-contaminated Oil enriched seawater 24.74 -88.37 207903654 339834 237 0 264 0 SRX1796713 0.0 Metagenome 3300071001 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_004-M-20180529-COMP-DNA1 3300071001 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 19101846 56837 74 4 142 7 0.0 Metagenome 3300011886 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00321 Weill Cornell Medical College 3300011886 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.8 -73.95 49133866 78132 22 0 28 0 SRX822294 0.0 Metagenome 3300037139 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 P3 40-44 DOE Joint Genome Institute (JGI) 3300037139 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0466 789752646 1346331 225 4 401 8 SRX8853769 Unrestricted 12.39 Metagenome 3300021580 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4869-30-1-2_MG DOE Joint Genome Institute (JGI) 3300021580 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.0074 -110.591 87935217 241630 155 6 290 4 SRX3982093 Unrestricted 23.83 Metagenome 3300045197 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_4_A DOE Joint Genome Institute (JGI) 3300045197 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 189714711 215506 115 1 131 2 Unrestricted 88.4 Metagenome 3300041790 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - A_29_wk_3 DOE Joint Genome Institute (JGI) 3300041790 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9514 -106.986 105580703 336836 239 4 425 13 SRX14808345 Unrestricted 7.47 Metagenome 3300040778 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Etang de Berre, Marignane, France - D29 Genopole Toulouse Midi-Pyrenees 3300040778 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.4847 5.188 192708741 385155 176 24 350 44 0.0 Metagenome 3300040212 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_001-O-30-7-20131122-GEN-DNA1 Argonne National Laboratory 3300040212 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 9527095 26847 46 14 87 22 ERX2134045 0.0 Metagenome 7000000653 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160421117 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000653 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 95757355 169524 0 0 0 0 0.0 Metagenome 3300013597 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100561 University of Pennsylvania 3300013597 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3413487 9143 17 4 30 11 SRX756193 0.0 Metagenome 3300002383 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 15JUN2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002383 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 34511253 90377 84 15 137 18 SRX1989772 Unrestricted 0.0 Metagenome 3300022415 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1BM3 JM99 AGRF 3300022415 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 49209921 87325 34 2 55 4 0.0 Metagenome 3300025008 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-21 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025008 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 347913345 618873 319 10 512 19 SRX3198637 Unrestricted 0.0 Metagenome 3300014586 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01350 Weill Cornell Medical College 3300014586 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.85 -73.82 21128775 21789 10 0 11 0 SRX823290 0.0 Metagenome 3300026795 *Microbiome Permanent Draft Thawing permafrost microbial communities from the Arctic, studying carbon transformations Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 612S3M (version 2) DOE Joint Genome Institute (JGI) 3300026795 Metagenome Analysis spades v. 3.11.1 Yes Yes rich.270@osu.edu Virginia Rich Yes 30013118 Environmental Terrestrial Wetlands Soil Permafrost Thawing permafrost 68.3533 19.0475 4005897 14676 3 0 5 1 SRX2774840 Unrestricted 0.0 Metagenome 3300006616 *Microbiome Permanent Draft Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia - TJ06 time point Australian Centre for Ecogenomics 3300006616 Metagenome Analysis CLC released per JGI data release policy No Yes crinke@lbl.gov Christian Rinke No Environmental Aquatic Coastal Marine Unclassified marine surface water -34.1192 151.2267 151506728 193245 30 1 23 1 0.0 Metagenome 3300011996 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A39_65cm_12M University of Tennessee 3300011996 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 237170490 576243 84 3 156 2 SRX710612 0.0 Metagenome 2043231006 *Microbiome Permanent Draft Marine microbial communities from the Landsort deep, Baltic Sea Sediment123 Soedertoern University 2043231006 Metagenome Analysis Newbler released per JGI data release policy No Yes petter.thureborn@sh.se Petter Thureborn No Environmental Aquatic Oceanic Marine Sediment Marine 58.58333333 18.23333333 101051463 243166 93 0 178 0 0.0 Metagenome 3300034973 *Microbiome Finished Coastal sediment microbial communities from Western Antarctica Coastal sediment microbial communities from Western Antarctica - 3_event17 Megahit 17 Michigan State University 3300034973 Metagenome Analysis Megahit v. 1.1 released by Deric Learman No Yes deric.learman@cmich.edu Deric Learman No Environmental Aquatic Coastal Marine Sediment marine sediment -70.4844 -95.1957 330727930 775438 174 41 469 79 0.0 Metagenome 3300010267 *Microbiome Permanent Draft Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 12_48_3.3_201_A2 metaG DOE Joint Genome Institute (JGI) 3300010267 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes Steve.Brown@lanzatech.com Steven Brown Yes 30202438 Engineered Bioreactor Anaerobic Semi-continuous Digestate Switchgrass degrading 43.726 -72.1429 236289755 384323 436 1 594 3 SRX3290070 Unrestricted 0.0 Metagenome 3300003394 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN DOE Joint Genome Institute (JGI) 3300003394 Metagenome Analysis Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 262102166 649176 258 49 479 67 SRX2564964 Unrestricted 0.0 Metagenome 3300049376 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - 9-2 DOE Joint Genome Institute (JGI) 3300049376 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 119114406 344582 268 5 467 8 Unrestricted 8.78 Metagenome 3300003972 *Microbiome Permanent Draft Composted filter cake microbial communities from Nova Europa, Brazil, from a cane sugar milling plant Composted filter cake microbial communities from Nova Europa, Brazil, from a cane sugar milling plant Sao Paulo State University 3300003972 Metagenome Analysis CLC Assembly Cell released per JGI data release policy No Yes wpomori@hotmail.com Wellington P. Omori, Wellington Omori No Engineered Solid waste Composting Agricultural waste Sugarcane filter cake Filter cake produced in cane sugar milling plant -21.818963 -48.614275 7 180002460 272907 45 12 98 16 0.0 Metagenome 3300026003 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_201 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026003 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 54468607 145387 148 3 254 6 SRX2564882, SRX2581058 Unrestricted 0.0 Metagenome 3300033741 *Microbiome Permanent Draft Extreme environments viral communities from various locations Cryopeg brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 CB1 DOE Joint Genome Institute (JGI) 3300033741 Metagenome Analysis spades v. 3.12.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Coastal Marine Unclassified cryopeg brine 71.2943 -156.7153 10091520 21410 30 24 52 26 SRX7525072 Unrestricted 3306.43 Metagenome 3300020191 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041410US metaG (spades assembly) DOE Joint Genome Institute (JGI) 3300020191 Metagenome Analysis spades v. 3.10.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 985617300 1896660 416 37 666 69 SRX3920930 Unrestricted 33.36 Metagenome 3300047283 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Colorado River, Arizona, USA - NASQAN2015_109 DOE Joint Genome Institute (JGI) 3300047283 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 32.7186 -114.7188 241060550 526140 239 15 403 46 Unrestricted 48.46 Metagenome 3300048836 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Sediment microbial communities from brackish wetlands in San Jose, California, USA - ROC8_1 DOE Joint Genome Institute (JGI) 3300048836 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Intertidal zone Marine Salt marsh sediment Sediment 37.427598 -121.938678 2030814490 2823186 618 42 810 57 Unrestricted 25.06 Metagenome 3300037875 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI146_2018_oct_100m DOE Joint Genome Institute (JGI) 3300037875 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 296678634 618149 233 25 406 47 SRX9401602 Unrestricted 10.43 Metagenome 3300039174 *Microbiome Finished Marine algae associated bacterial community from Sydney, Australia Marine algae associated bacterial community from Sydney, Australia - Ulva australis_3R1 w/o D323 Ramaciotti Centre for Genomics 3300039174 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes j.nappi@unsw.edu.au Jadranka Nappi No Host-associated Algae Unclassified Unclassified Unclassified Marine -33.990304 151.231529 511630303 739741 91 16 202 18 0.0 Metagenome 3300070594 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_004-M-20180626-COMP-DNA1 Battelle Memorial Institute 3300070594 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 45.822941 -121.998707 5.16-5.6 40052686 119816 82 7 145 13 0.0 Metagenome 3300017638 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - L211-07 University of Michigan 3300017638 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.68079 -84.4871 33185635 41962 17 1 18 0 0.0 Metagenome 3300024990 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_750_plan (SPAdes) DOE Joint Genome Institute (JGI) 3300024990 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 476329968 648818 140 169 137 36 SRX2867350, SRX2867351 Unrestricted 0.0 Metagenome 3300044642 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME01Jul2002-rr0930 DOE Joint Genome Institute (JGI) 3300044642 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 914940266 1370122 305 66 407 105 Unrestricted 25.74 Metagenome 3300045081 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Plains ecozone, Canada - Lake 04-577 Genome Quebec 3300045081 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 68.344096 -133.705674 926683005 2170410 377 44 604 65 0.0 Metagenome 3300005873 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_301 DOE Joint Genome Institute (JGI) 3300005873 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 235379817 787699 406 7 696 15 SRX2564777, SRX2581044 Unrestricted 0.0 Metagenome 3300035249 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B5.8_Sample5.Rodeo8.Well1210 DOE Joint Genome Institute (JGI) 3300035249 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 308761563 507211 269 0 431 0 SRX8355128 Unrestricted 33.4 Metagenome 3300026846 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgHMA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026846 Metagenome Analysis spades v. 3.11.1 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 30503168 103654 102 4 166 7 SRX2521249 Unrestricted 0.0 Metagenome 3300000280 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM221 Beijing Genomics Institute (BGI), Macrogen 3300000280 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 79804660 129545 193 0 363 0 0.0 Metagenome 3300030028 *Microbiome Permanent Draft Marine Fish Microbial Metagenomes Coastal Myxini gut microbial communities from Southern California Bight, Pacific Ocean - XES1A University of California, San Diego, Scripps Institute of Oceanography 3300030028 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton No Host-associated Fish Intestine Digestive system Unclassified fish gut 32.87051111 -117.2607611 26934693 44823 2 2 5 11 0.0 Metagenome 3300028188 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_150 DOE Joint Genome Institute (JGI) 3300028188 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified marine 48.6 -123.5 419569947 766078 304 1 461 0 SRX5244711 Unrestricted 31.44 Metagenome 3300049595 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Aug2012-rr0268 (version 2) DOE Joint Genome Institute (JGI) 3300049595 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1046873303 1584884 360 56 476 70 Unrestricted 0.0 Metagenome 3300009978 *Microbiome Permanent Draft Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_199 metaG DOE Joint Genome Institute (JGI) 3300009978 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes esinger@lbl.gov; twoyke@lbl.gov Esther Singer; Tanja Woyke No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass associated 30.387 -97.7301 31905527 65865 62 5 122 5 SRX2524284 Unrestricted 0.0 Metagenome 3300029785 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 037_10_31_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029785 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 247388828 316228 276 0 352 0 0.0 Metagenome 3300022861 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T25 DOE Joint Genome Institute (JGI) 3300022861 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 193298224 284327 83 13 109 12 SRX4415312, SRX7705692 Unrestricted 0.0 Metagenome 3300040379 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Temperate deciduous broadleaf forest soil microbial communities from Baltimore, USA - 006_R1_022417 University of Maryland 3300040379 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate deciduous broadleaf forest soil 39.34206667 -76.60105 5884029 18560 45 8 87 13 0.0 Metagenome 3300056623 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Activated sludge microbial communities from bioreactor in WWTP, Madison, WI, USA - RS_2020-02-12_SampleA DOE Joint Genome Institute (JGI) 3300056623 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.03331 -89.35633 642132433 662223 227 13 242 15 Unrestricted 18.36 Metagenome 3300031351 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-190 DOE Joint Genome Institute (JGI) 3300031351 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.759 -70.891 344766969 665271 247 1 373 1 SRX5358341 Unrestricted 19.61 Metagenome 3300031724 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20 DOE Joint Genome Institute (JGI) 3300031724 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1501586510 3802161 500 8 867 16 SRX5817409 Unrestricted 12.92 Metagenome 3300010289 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial mat communities from California, USA to study Microbial Dark Matter (Phase II) - Cone Pool mat layer C metaG DOE Joint Genome Institute (JGI) 3300010289 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; jspear@mines.edu; jkjarett@lbl.gov Ramunas Stepanauskas; John Spear; Jessica Jarett No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 474401266 809377 353 1 491 4 SRX2526462 Unrestricted 0.0 Metagenome 3300046357 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_25 DOE Joint Genome Institute (JGI) 3300046357 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9703 -106.997 274499376 700040 702 176 1230 227 Restricted 0.0 Metagenome 3300021364 *Microbiome Permanent Draft Coastal seawater microbial communities from Pivers Island, North Carolina, United States Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304 DOE Joint Genome Institute (JGI) 3300021364 Metagenome Analysis spades v. 3.11.1-check Yes Yes dana.hunt@duke.edu Dana Hunt No Environmental Aquatic Coastal Marine Unclassified seawater 34.7181 -76.6707 971928800 2160216 581 208 922 370 SRX4010392 Unrestricted 14.59 Metagenome 7000000560 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 550534656 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000560 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2287013 2684 0 0 0 0 0.0 Metagenome 3300027569 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius albidus HERON ISLAND.2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027569 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 53.109679 8.847516 586934693 662646 3 3 4 1 SRX2577599 Unrestricted 0.0 Metagenome 3300024449 *Microbiome Permanent Draft Vaginal microbial communities from lab mice Vaginal microbial communities from healthy lab mice, Madrid, Spain - A2, day 1 Polytechnic University of Valencia 3300024449 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Vagina Reproductive system Unclassified mice vagina 40.4191094 -3.6725753 736724 1135 0 0 0 0 0.0 Metagenome 3300039347 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 608_4M Beijing Genomics Institute (BGI) 3300039347 Metagenome Analysis Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 25974786 29636 21 0 29 0 ERX491264 0.0 Metagenome 3300004805 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA6M DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300004805 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu, tmcmahon@engr.wisc.edu; shaomei.he@gmail.com Katherine McMahon, Katherine McMahon; Shaomei He No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 653103223 1711191 733 23 1244 52 SRX2518384 Unrestricted 0.0 Metagenome 3300039916 *Microbiome Permanent Draft Industrial fuel microbial communities from aircraft samples near Hamburg, Germany Industrial fuel microbial communities from aircraft samples near Hamburg, Germany - 150824_02 re-assembly HPI Heinrich-Pette-Institut 3300039916 Metagenome Analysis metaSpades v. 3.1 released by Ines Krohn-Molt No Yes wolfgang.streit@uni-hamburg.de; ines.krohn@uni-hamburg.de Wolfgang Streit; Ines KROHN No Engineered Industrial production Unclassified Engineered product Unclassified Industrial fuel 53.338 9.5152 85980754 93907 11 5 21 5 0.0 Metagenome 3300050185 *Microbiome Permanent Draft Lab enriched KB-1 culture virl communities from University of Toronto, Ontario, Canada Lab enriched KB-1 culture virl communities from University of Toronto, Ontario, Canada - VC-MeOH University of Toronto 3300050185 Metagenome Analysis Custom JGI assembly. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Microbial Unclassified Bacteria Unclassified Lab enriched KB-1 culture 43.6587 -79.3955 64001394 115293 56 0 78 0 SRX10994676 0.0 Metagenome 3300028880 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181 DOE Joint Genome Institute (JGI) 3300028880 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92029772 -106.94875926 933095814 2611904 604 24 1164 38 SRX5354715 Unrestricted 10.28 Metagenome 3300034127 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_16 DOE Joint Genome Institute (JGI) 3300034127 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9142 -147.8349 647228788 1699321 622 18 1192 42 SRX7633793 Unrestricted 7.4 Metagenome 3300018058 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG DOE Joint Genome Institute (JGI) 3300018058 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 3.8381 -73.3194 2249412722 4983134 1363 14 2532 12 SRX3936784 Unrestricted 5.08 Metagenome 3300069589 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Barrow Environmental Observatory, Tundra, AK, USA - BARR_006-O-20170807-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069589 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 71.28241 -156.61936 24454613 61295 44 3 67 7 0.0 Metagenome 3300027355 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage D2F06 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027355 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 45386790 52042 47 0 44 0 SRX3195126 Unrestricted 0.0 Metagenome 3300056781 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA17 DOE Joint Genome Institute (JGI) 3300056781 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 156415274 360508 348 6 723 7 Restricted 0.0 Metagenome 3300012685 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG DOE Joint Genome Institute (JGI) 3300012685 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 2053499065 4145586 1149 29 2201 52 SRX3373340 Unrestricted 0.0 Metagenome 3300001446 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sulfidic aquatic microbial communities from Washburn Spring, Yellowstone National Park, USA - WS DOE Joint Genome Institute (JGI) 3300001446 Metagenome Analysis Yes Yes jim.fredrickson@pnnl.gov, binskeep@montana.edu; jim.fredrickson@pnnl.gov Jim Fredrickson, William P. Inskeep; Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Sulfidic aquatic 44.376 -110.69 287352834 498817 234 14 336 5 SRX2553558 0.0 Metagenome 2149837012 *Microbiome Permanent Draft Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ Beijing Genomics Institute (BGI), Lifesequencing S.L. 2149837012 Metagenome Analysis Not Assembled released per JGI data release policy No Yes manuel.fernandez@eez.csic.es Fernandez-Lopez, Manuel No Host-associated Plants Rhizosphere Roots Soil Quercus rhizosphere 36.95744 -3.46336 78990894 256303 330 43 702 0 0.0 Metagenome 3300006525 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 764062976 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006525 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; snayfach@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 175242551 237544 161 0 230 0 0.0 Metagenome 3300042640 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A33 University of California, Davis 3300042640 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 182627839 538723 288 7 528 6 0.0 Metagenome 3300007903 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 159247771 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007903 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 1802132 1912 1 0 1 0 0.0 Metagenome 2162886008 *Microbiome Permanent Draft Soil microbial communities from Puerto Rico rain forest, that decompose switchgrass Soil microbial communities from Puerto Rico rain forest, that decompose switchgrass - Feedstock-adapted consortia SG + Fe DOE Joint Genome Institute (JGI) 2162886008 Metagenome Analysis released based on JGI ITS No Yes tchazen@lbl.gov, tchazen@utk.edu Terry Hazen, Terry C. Hazen Yes 24019987 Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 18.3724 -65.7166 154120208 193491 3 0 4 0 Unrestricted 0.0 Metagenome 3300033564 *Microbiome Permanent Draft Sinkhole microbial mat communities from Lake Huron, Michigan, USA Sinkhole microbial mat from Lake Huron, Michigan, USA - SG0335 University of Michigan 3300033564 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy Yes Yes sgrim01@gmail.com Sharon Grim No Environmental Aquatic Sinkhole Freshwater Unclassified microbial mat 45.19843 -83.32721 256970985 313135 91 13 100 11 0.0 Metagenome 3300015366 *Microbiome Permanent Draft Danish lakes Microbial communities Depth profiles Lake Almind and Hund Freshwater microbial communities from Lake Hund, Silkeborg, Region Midtjylland, Denmark - HUS_14.08.12_3m metaSPAdes assemblies Odense University Hospital 3300015366 Metagenome Analysis metaSPAdes 3.7.1 released by JGI data releasing policy Yes Yes atreusch@biology.sdu.dk Alexander Treusch No Environmental Aquatic Lake Freshwater Unclassified Freshwater 56.04 9.54 5.4 83301668 224975 42 9 57 16 0.0 Metagenome 3300013423 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100167 University of Pennsylvania 3300013423 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8553707 18731 16 4 34 5 SRX756365 0.0 Metagenome 3300025994 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_304 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025994 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 86567730 227663 179 2 312 4 SRX2564780, SRX2581053 Unrestricted 0.0 Metagenome 3300066301 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_055-O-20170718-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066301 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 22218861 66277 108 18 196 24 0.0 Metagenome 3300025372 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jun07 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025372 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 90961033 204426 55 30 99 69 SRX2565421 Unrestricted 0.0 Metagenome 3300007866 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 1, subject 159450072 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007866 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 15259801 28772 6 3 11 8 SRX024634, SRX024633, SRX024672, SRX024673 0.0 Metagenome 3300001505 *Microbiome Permanent Draft Human axilla skin microbial communities from the University of Liverpool, UK Human axilla skin microbial communities from the University of Liverpool, UK - AX11 3300001505 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Host-associated Mammals: Human Skin Integumentary system Axilla/Armpit Human axilla skin 53.3484 -3.009 20212776 36693 19 3 45 6 0.0 Metagenome 3300002950 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-5-D DOE Joint Genome Institute (JGI) 3300002950 Metagenome Analysis Yes Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 65026790 152216 177 31 331 57 SRX2568493 Unrestricted 0.0 Metagenome 3300027587 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027587 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 356875600 773626 227 36 425 60 SRX3312091 Unrestricted 0.0 Metagenome 3300035225 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P4_June_2010_1300m DOE Joint Genome Institute (JGI) 3300035225 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 48.65 -126.6666 451400425 1094800 394 40 596 76 SRX8189187 Unrestricted 15.01 Metagenome 3300069567 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_008-M-20170627-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069567 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 5750987 18502 55 4 96 5 0.0 Metagenome 3300038605 *Microbiome Permanent Draft Oyster larvae and tank water microbial communities from oyster tank in Dauphin Island, Alabama, USA Water microbial communities from oyster tank in Dauphin Island, Alabama, USA - 121W U.S. Food and Drug Administration 3300038605 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Aquaculture Unclassified Water 30.25 -88.11 33691040 64102 52 0 69 0 0.0 Metagenome 3300060586 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210602_06_17 DOE Joint Genome Institute (JGI) 3300060586 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 638217180 939441 211 105 285 153 Unrestricted 21.02 Metagenome 3300005652 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus leukodermatus Group 1a BELIZE.1 DOE Joint Genome Institute (JGI) 3300005652 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 901443708 2074909 21 9 12 12 SRX2712317 Unrestricted 0.0 Metagenome 3300025690 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025690 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 454006646 912492 339 68 520 108 SRX2999544 Unrestricted 0.0 Metagenome 3300038973 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-10-3_at_8-9_cm Genome Quebec 3300038973 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.88147 -73.76618 641285271 1546895 488 2 946 3 0.0 Metagenome 3300040604 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 059B_R1 University of Maryland 3300040604 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.99243056 25.70189444 1697988 4817 7 0 6 0 0.0 Metagenome 3300028990 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 275_12M Beijing Genomics Institute (BGI) 3300028990 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 54714876 58751 63 2 70 0 ERX491059 0.0 Metagenome 3300037528 *Microbiome Permanent Draft Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_18_07-R3 DOE Joint Genome Institute (JGI) 3300037528 Metagenome Analysis metaspades v. 3.13.0 Yes Yes ziels@mail.ubc.ca Ryan Ziels No Engineered Bioreactor Unclassified Anaerobic Unclassified sludge 51.9691 5.6654 413397995 518460 243 0 320 0 SRX9097228, SRX9097227 Unrestricted 0.0 Metagenome 3300026632 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN346 (SPAdes) DOE Joint Genome Institute (JGI) 3300026632 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 2451489 7468 39 6 72 7 SRX3311793 Unrestricted 0.0 Metagenome 3300008952 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um Georgia Genomics Facility 3300008952 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 1028028157 1272736 322 93 393 116 0.0 Metagenome 3300035338 *Microbiome Permanent Draft Bioreactor microbial communities from dechlorination culture samples - Genome Institute of Singapore Bioreactor microbial communities from dechlorination culture samples - Genome Institute of Singapore - CG1-PCB Genome Institute of Singapore 3300035338 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Bioreactor Unclassified Unclassified Unclassified Bioreactor 74869131 97012 42 0 56 0 SRX392467 0.0 Metagenome 3300019935 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - BB_1_MG DOE Joint Genome Institute (JGI) 3300019935 Metagenome Analysis spades v. 3.10.1 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Microbial mats Freshwater microbial mat 38.7906 -75.1644 83300237 176276 212 18 327 24 SRX3982506 Unrestricted 31.09 Metagenome 7000000384 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 160400887 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000384 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 6102335 12756 0 0 0 0 SRX023030, SRX023031 0.0 Metagenome 3300023711 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 3 Spades (v2) (version 2) DOE Joint Genome Institute (JGI) 3300023711 Metagenome Analysis MEGAHIT v. 1.0.6 No Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4148 -119.8405 399710352 832666 353 8 579 16 SRX3962685 Unrestricted 0.0 Metagenome 3300044836 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_39BS DOE Joint Genome Institute (JGI) 3300044836 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.5132 -106.0526 601071369 1026131 248 26 446 28 SRX20649732 Unrestricted 18.28 Metagenome 3300035673 *Microbiome Permanent Draft Forest soil microbial communities from Eldorado National Forest, California, USA Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_CNT_1.1 DOE Joint Genome Institute (JGI) 3300035673 Metagenome Analysis metaspades v. 3.13.0 Yes Yes ndove7@gmail.com Nicholas Dove No Environmental Terrestrial Temperate forest Soil Bulk soil soil 38.7577 -120.4371 2215644349 5516895 1468 120 2633 224 SRX8239512 Unrestricted 8.62 Metagenome 3300032117 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003 DOE Joint Genome Institute (JGI) 3300032117 Metagenome Analysis spades v. 3.12.0 Yes Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.0411 -89.6861 728163100 1383961 413 65 542 99 SRX8174196 Unrestricted 21.5 Metagenome 3300024188 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 2D DOE Joint Genome Institute (JGI) 3300024188 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 247370079 709813 295 48 503 79 SRX4457284 Unrestricted 16.96 Metagenome 3300020205 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erken, Sweden Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1 SciLifeLab 3300020205 Metagenome Analysis megahit v. 1.0.3 released per PI No Yes rhiannon.mondav@gmail.com Rhiannon Mondav No Environmental Aquatic Lake Freshwater Unclassified Freshwater 59.83763399 18.6203826 1270872690 2461501 711 207 1002 332 0.0 Metagenome 3300009700 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG DOE Joint Genome Institute (JGI) 3300009700 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes loy@microbial-ecology.net; Michael.Pester@dsmz.de Alexander Loy; Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.1318 11.881 1552298103 2807158 558 6 769 5 Unrestricted 0.0 Metagenome 3300042064 *Microbiome Permanent Draft Deep-sea coral associated microbial communities from Gulf of Mexico, USA Deep-sea coral microbial communities from Gulf of Mexico, USA - 16381 AT357 S26-7 Ecosystem Impacts of Oil and Gas Inputs to the Gulf Consortium, The Pennsylvania State University 3300042064 Metagenome Analysis Custom JGI assembly. Yes Yes No Host-associated Invertebrates Coral Cnidaria Unclassified Deep-sea coral 27.587 -89.705 769578132 862921 10 27 16 158 SRX6913171, SRX6911439 0.0 Metagenome 3300010157 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG DOE Joint Genome Institute (JGI) 3300010157 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 46.8319 -72.5 938859126 1723099 516 89 741 131 SRX2524546 Unrestricted 0.0 Metagenome 3300052657 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Photosynthetic mat viral communities from Octopus Spring, YNP, Wyoming, United States - OS20050623 m1 DOE Joint Genome Institute (JGI) 3300052657 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.53408 -110.7979 12951644 21254 10 1 13 4 Unrestricted 0.0 Metagenome 3300070671 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Virginia, USA - BLAN_005-M-20200713-COMP-DNA1 3300070671 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 21093195 67803 97 9 171 9 0.0 Metagenome 3300042323 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME27Jun2017-rr0720 DOE Joint Genome Institute (JGI) 3300042323 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 661895845 1081950 306 73 398 103 Unrestricted 18.14 Metagenome 3300048642 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from North Pacific Ocean - CTD-AT42-06-002-625m-0.65 DOE Joint Genome Institute (JGI) 3300048642 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 8.39977 -104.9807 683064459 1139091 331 74 516 107 Unrestricted 31.32 Metagenome 3300070416 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lajas Experimental Station, Puerto Rico, USA - LAJA_051-M-20160920-COMP-DNA1 3300070416 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 59971199 193790 56 7 165 10 0.0 Metagenome 3300045062 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Plains ecozone, Canada - Lake 04-576 Genome Quebec 3300045062 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 67.468001 -133.763637 1211697255 2790648 488 116 766 203 0.0 Metagenome 3300043006 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - Beaver2Cecum1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043006 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.18 -122.54 145491334 276358 358 10 613 13 SRX8345784 Unrestricted 58.91 Metagenome 3300000452 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 DOE Joint Genome Institute (JGI) 3300000452 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 1278111 3953 50 22 74 23 SRX2021672, SRX1985376, SRX1985375 0.0 Metagenome 3300069435 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Mid-Atlantic, VA, USA - SCBI_004-M-20170717-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069435 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89292 -78.1395 11056824 35968 54 5 110 9 0.0 Metagenome 3300042402 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME26Oct2009-rr0266 DOE Joint Genome Institute (JGI) 3300042402 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1037654153 1645687 333 64 416 74 Unrestricted 22.39 Metagenome 3300021478 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M DOE Joint Genome Institute (JGI) 3300021478 Metagenome Analysis spades v. 3.11.1-check Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 3609007118 7785811 968 79 1723 111 SRX4026208 Unrestricted 8.9 Metagenome 3300042944 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-329 Genome Quebec 3300042944 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.472208 -120.152128 1375944839 3214611 388 94 664 163 0.0 Metagenome 3300019709 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BRT_3-4_MG DOE Joint Genome Institute (JGI) 3300019709 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 103874625 260923 237 15 459 26 SRX3982608 Unrestricted 3.41 Metagenome 3300052918 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Soil microbial communities from peatland in Alberta, Canada - SB-EXT 70-80 cm DOE Joint Genome Institute (JGI) 3300052918 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4579 -114.8736 423254144 580176 147 1 213 0 Restricted 90.51 Metagenome 3300025884 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Zodletone spring, Oklahoma to study Microbial Dark Matter (Phase II) - Zodletone Spring source 2m metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025884 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; mostafa@okstate.edu Ramunas Stepanauskas; Mostafa Elshahed No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 557887446 1603581 615 1 1166 4 SRX2525191 Unrestricted 0.0 Metagenome 3300064814 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 680 in Bonnyville, Alberta, Canada - S00JY_0794 Microbiome Insights 3300064814 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 54.19361867 -110.4724417 116144167 166505 57 2 98 4 0.0 Metagenome 3300020490 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 18JUL2008 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020490 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 44229334 99574 51 5 72 9 SRX3310669 Unrestricted 0.0 Metagenome 3300045942 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Leaf microbial communities from farm grass in Deerfield, Massachusetts, United States - Ryegrass_Phyllosphere_Drought4 DOE Joint Genome Institute (JGI) 3300045942 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 42.4788 -72.5788 1279427297 2462555 428 279 551 368 Restricted 0.0 Metagenome 3300025219 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0740 (SPAdes) DOE Joint Genome Institute (JGI) 3300025219 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -31.81 6.84 103592064 205080 109 2 161 3 SRX1982963 Unrestricted 0.0 Metagenome 3300045404 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-499 Genome Quebec 3300045404 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 51.473574 -123.887461 1127057139 2491676 484 154 831 285 0.0 Metagenome 3300036816 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in New South Wales, Australia - Pf_10 DOE Joint Genome Institute (JGI) 3300036816 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil -34.5 150.0 728259850 1233409 328 26 527 38 SRX8386439 Unrestricted 19.07 Metagenome 3300022882 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #91 DOE Joint Genome Institute (JGI) 3300022882 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 197528912 374143 214 4 320 9 SRX4395110 Unrestricted 17.68 Metagenome 3300006170 *Microbiome Finished Saline water microbial communities from Bras del Port Salterns, Alicante, Spain Saline water microbial communities from Bras del Port Salterns, Alicante, Spain - SS33 GATC-Biotech AG, Konstanz, Germany 3300006170 Metagenome Analysis Newbler released per PI No Yes redcancerbero@gmail.com, alm067@ucsd.edu Alvaro M. Plominsky No Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Unclassified salt cristalyzer pond 38.1923 -0.555207 9303833 18476 19 0 35 0 0.0 Metagenome 3300007821 *Microbiome Permanent Draft Permafrost core soil microbial communities from Svalbard, Norway Permafrost core soil microbial communities from Svalbard, Norway - sample 2-10-2 Soapdenovo Princeton University 3300007821 Metagenome Analysis soapdenovo1.06 released per JGI data release policy Yes Yes xue.ethan@gmail.com yaxin xue No Environmental Terrestrial Unclassified Soil Permafrost soil 78.11096 15.55294 54353971 77498 8 1 16 0 0.0 Metagenome 3300005946 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_DCM_ad_71m_LV_A DOE Joint Genome Institute (JGI) 3300005946 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 663638976 1829492 673 49 1094 100 SRX2776939 Unrestricted 0.0 Metagenome 3300005317 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila putrida male 2 gut Cornell University 3300005317 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy No Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila putrida male adult gut 43.025606 -77.572811 130213567 309386 63 29 106 36 0.0 Metagenome 3300070825 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_002-O-20160823-COMP-DNA1 3300070825 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 29745542 93294 114 17 205 35 0.0 Metagenome 3300034003 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 18HMC DOE Joint Genome Institute (JGI) 3300034003 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological hypolithic biocrust 34.3778 -117.6098 213041513 574526 440 71 783 87 SRX7615739 Unrestricted 7.3 Metagenome 7000000647 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160400887 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000647 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 92479149 173912 0 0 0 0 0.0 Metagenome 3300040456 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from LBJ National Grassland , Southern Plains, TX, USA - CLBJ_006-M-20170412-COMP-DNA1 Battelle Memorial Institute 3300040456 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 33.40123 -97.57 3424492 10951 23 4 35 6 0.0 Metagenome 3300034795 *Microbiome Permanent Draft Sediment microbiome project Sediment microbial communities from wetland pond in Xixi Nat. Park in Hangzhou, Zhejiang, China - 7 Beijing Genomics Institute (BGI) 3300034795 Metagenome Analysis megahit v. 1.1.3 released by JGI data releasing policy No Yes 17826834892@163.com wang binhao No Environmental Aquatic Pond Freshwater Sediment sediment 30.268 120.04 160419343 225274 89 4 125 3 0.0 Metagenome 3300031546 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23 DOE Joint Genome Institute (JGI) 3300031546 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1611810363 3921070 587 15 1077 31 SRX5665737 Unrestricted 12.34 Metagenome 3300026973 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-C (SPAdes) DOE Joint Genome Institute (JGI) 3300026973 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.56 -89.32 13042064 35620 55 3 91 5 SRX1991327 Unrestricted 0.0 Metagenome 3300001532 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-PF 12A)- 1 week illumina University of Tennessee 3300001532 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 259024595 1016949 490 21 798 62 0.0 Metagenome 3300042567 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Jun2012-rr0676 DOE Joint Genome Institute (JGI) 3300042567 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 780236051 1246316 265 40 350 55 Unrestricted 21.5 Metagenome 3300038632 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes in Niagara, Canada Freshwater lake microbial communities from the Great Lakes in Niagara, Canada - LCE-1W-Aug9-2012 McMaster University 3300038632 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 42.8722 -79.4272 7792994 19001 24 0 46 0 0.0 Metagenome 3300036990 *Microbiome Permanent Draft Soil microbial communities from a coastal freshwater wetland in North Carolina, United States Soil microbial communities from coastal freshwater wetland in North Carolina, United States - 12Pre DOE Joint Genome Institute (JGI) 3300036990 Metagenome Analysis metaspades v. 3.13.0 Yes Yes peraltaa@ecu.edu Ariane Peralta No Environmental Terrestrial Wetlands Soil Unclassified soil 35.8956 -76.1655 366719944 639442 187 12 330 18 SRX8387784 Unrestricted 15.68 Metagenome 3300014522 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 51_4M Beijing Genomics Institute (BGI) 3300014522 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 54569457 63106 36 0 35 0 ERX491164 0.0 Metagenome 7000000055 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 765560005 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000055 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 35937 44 0 0 0 0 SRX024157 0.0 Metagenome 3300036425 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25.v5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036425 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 171487637 303122 113 15 130 18 SRX8128116, SRX8128115 Unrestricted 0.0 Metagenome 3300008519 *Microbiome Permanent Draft Army ant gut microbial communities Neotropical army ants gut microbial communities from Monteverde, Costa Rica - Neivamyrmex summichrasti Gut microbial communities of Neivamyrmex summichrasti 3300008519 Metagenome Analysis IDBA-UD released by JGI data releasing policy Yes Yes jar337@drexel.edu, yihu.bnu@gmail.com Jacob Russell, Yi Hu No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Neotropical army ants gut 10.306961 -84.809844 197523793 197660 4 7 5 19 0.0 Metagenome 3300003464 *Microbiome Permanent Draft Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S8-DC07B 3300003464 Metagenome Analysis released per JGI data releasing policy No Yes julie.champagne@cnrc-nrc.gc.ca Julie Champagne No Environmental Aquatic Neritic zone/Coastal water Marine Sediment Marine sediment 53.6667 -129.1333 87998804 343264 118 3 246 6 0.0 Metagenome 3300013335 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100234 University of Pennsylvania 3300013335 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8581745 25398 15 1 23 1 SRX756667 0.0 Metagenome 3300022799 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA15 Version 2 University of New South Wales 3300022799 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au; z5119396@unsw.edu.au Holly Bennett; Viet Hung Nguyen No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 49085258 66958 35 0 42 1 0.0 Metagenome 3300042589 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A17 University of California, Davis 3300042589 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 233297763 663139 335 10 620 15 0.0 Metagenome 3300004832 *Microbiome Permanent Draft Salt marsh microbial communities from Little Sippewissett, Woods Hole, MA that are anoxygenic and photosynthetic Marine anoxygenic phototrophic community SCB2a Marine Biological Laboratory 3300004832 Metagenome Analysis CLC released per JGI data release policy No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Intertidal zone Marine Salt marsh marine 41.5758508 -70.635807 46530151 84703 34 0 84 0 0.0 Metagenome 3300002545 *Microbiome Permanent Draft Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland, that are autotrophic Deep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/37_all DOE Joint Genome Institute (JGI) 3300002545 Metagenome Analysis Yes Yes rizlan.bernier-latmani@epfl.ch Rizlan Bernier-Latmani Yes 27739431 Environmental Aquatic Groundwater Deep subsurface Porewater Deep surbsurface 47.379 7.1648 217080939 357396 220 4 357 2 SRX957932 Unrestricted 0.0 Metagenome 3300021494 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-2-3_MG DOE Joint Genome Institute (JGI) 3300021494 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.0114 -110.5956 132448079 295983 233 1 384 1 SRX3982245 Unrestricted 10.57 Metagenome 3300009008 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 250-2.7um Georgia Genomics Facility 3300009008 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 1587842778 1697737 522 4 678 6 0.0 Metagenome 3300069640 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik, Tundra, AK, USA - TOOL_043-M-20170719-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069640 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 68.66109 -149.37047 147349840 394591 148 5 277 11 0.0 Metagenome 3300049459 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere DOE Joint Genome Institute (JGI) 3300049459 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5875 -123.1933 417170682 596179 156 29 199 54 Unrestricted 25.7 Metagenome 3300049824 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 DOE Joint Genome Institute (JGI) 3300049824 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.40849 -82.168434 1533619395 2542472 566 15 1006 27 Unrestricted 13.94 Metagenome 3300002138 *Microbiome Permanent Draft Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds M3t6FKB1 (102f) 3300002138 Metagenome Analysis released by JGI data releasing policy No Yes daniel.herlemann@io-warnemuende.de, daniel.herlemann@emu.ee Daniel Herlemann, Daniel P. Herlemann No Environmental Aquatic Unclassified Unclassified Unclassified Marine 65.3915 23.49916667 195244765 919668 201 39 457 58 0.0 Metagenome 3300011822 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00286 Weill Cornell Medical College 3300011822 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.71 -74.0 46381960 60839 10 0 15 0 SRX822259 0.0 Metagenome 3300017817 *Microbiome Permanent Draft Comparative metagneomics of mesophilic and thermophilic cellulose-adapted consortia Cellulose adapted compost microbial communities from Newby Island Compost Facility, Milpitas, CA, USA - Passage2 37B (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017817 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes SWSinger@lbl.gov Steven W. Singer Yes 25136443 Engineered Solid waste Composting Bio- and green waste (BGW) Unclassified Feedstock adapted compost 37.840898 -122.289614 354976755 616800 282 11 382 17 SRX3311900 Unrestricted 0.0 Metagenome 3300028816 *Microbiome Permanent Draft Microbial communities from Yellowstone National Park hot springs 2017 Hot spring sediment microbial communities from Mouthful Geyser Outflow 2, Yellowstone National Park, USA - 170629F University of Minnesota 3300028816 Metagenome Analysis SPAdes v. 3.11.0 released by JGI data releasing policy Yes Yes trinityh@umn.edu Trinity Hamilton No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.5325 -110.7978 8.804 104661654 234717 56 0 90 1 0.0 Metagenome 3300015321 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_31MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015321 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 179214443 321361 5 29 7 29 SRX3922931 Unrestricted 10.38 Metagenome 3300036880 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-2-D DOE Joint Genome Institute (JGI) 3300036880 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 608104319 993623 194 5 292 10 SRX8137263 Unrestricted 13.27 Metagenome 3300027084 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1554A-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027084 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2871 -123.9424 190415023 383791 143 12 231 18 SRX2753735 Unrestricted 0.0 Metagenome 3300020232 *Microbiome Permanent Draft Deep-sea sediment microbial communities from the Pacific Ocean trenches Deep-sea sediment microbial communities from the Mariana Trench, Pacific Ocean - CR05 JGI facility at Oak Ridge National Laboratory 3300020232 Metagenome Analysis Megahit released by Logan Peoples No Yes lpeoples@ucsd.edu Logan Peoples No Environmental Aquatic Oceanic Marine Sediment sediment 11.54708 144.55847 187207005 243847 83 5 106 3 0.0 Metagenome 3300011118 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaG DOE Joint Genome Institute (JGI) 3300011118 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Oceanic Marine Sediment Deep subsurface 56.103 10.458 2724523976 5554007 1808 13 3016 18 SRX3203407 Unrestricted 0.0 Metagenome 3300037783 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - ARW9_20151117 DOE Joint Genome Institute (JGI) 3300037783 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 109272947 188126 113 11 154 14 SRX9140176 Unrestricted 83.36 Metagenome 3300013228 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100432 University of Pennsylvania 3300013228 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 31809587 64737 21 0 25 0 SRX756566 0.0 Metagenome 3300069323 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_021-M-20140327-COMP-DNA1 re-annotation Argonne National Laboratory 3300069323 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 2410171 7568 32 9 53 12 ERX2133959 0.0 Metagenome 3300042435 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 DOE Joint Genome Institute (JGI) 3300042435 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.8942 -103.685 722213584 1788562 820 78 1523 132 Unrestricted 6.77 Metagenome 3300046343 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_121 DOE Joint Genome Institute (JGI) 3300046343 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9236 -106.9499 126836296 452492 540 5 1078 12 Restricted 0.0 Metagenome 3300043241 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from Nevada, United States - Crystal Pool (CP_S1) (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043241 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified Desert spring 36.4202 -116.323 7.4 411339127 622040 188 3 287 9 SRX9167284 Unrestricted 75.25 Metagenome 3300070480 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_014-O-20200106-COMP-DNA1 Battelle Memorial Institute 3300070480 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 19.587494 -155.339669 3.76-5.5 2044551 6676 13 3 17 3 0.0 Metagenome 3300069402 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_004-M-20170626-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069402 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 62918889 173325 105 4 235 6 0.0 Metagenome 3300013908 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00875 Weill Cornell Medical College 3300013908 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.69 -73.85 6526078 9978 8 0 15 0 SRX822841 0.0 Metagenome 3300039684 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA Corn field soil microbial communities from Boone County, Iowa, USA - CC12-WS-July2012 Iowa State University 3300039684 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land Corn field soil 42.01375 -93.783837 51749414 167194 130 10 276 12 0.0 Metagenome 3300011165 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01165 Weill Cornell Medical College 3300011165 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.67 -73.89 28579055 43406 15 0 25 0 SRX823120 0.0 Metagenome 7000000109 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 158944319 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000109 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 113421716 202295 0 0 0 0 0.0 Metagenome 3300027100 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF025 (SPAdes) DOE Joint Genome Institute (JGI) 3300027100 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.17263 15857087 48941 25 3 46 3 SRX2014342 Unrestricted 0.0 Metagenome 3300048877 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_3_E DOE Joint Genome Institute (JGI) 3300048877 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 154668952 181566 86 1 110 1 Restricted 0.0 Metagenome 3300055521 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.2W.8 SIP fraction DOE Joint Genome Institute (JGI) 3300055521 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 217728036 397899 186 11 302 35 Unrestricted 13.94 Metagenome 3300028678 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_2 DOE Joint Genome Institute (JGI) 3300028678 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 668594529 1725604 1026 111 1824 234 SRX5355620 Unrestricted 0.0 Metagenome 3300043114 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B6.3_Sample6.Rodeo3.Well662 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043114 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 33683147 53445 31 0 46 0 SRX8356084 Unrestricted 343.39 Metagenome 3300000573 *Microbiome Draft Wetland microbial communities from Twitchell Island in the Sacramento Delta Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk v5 (version 5) DOE Joint Genome Institute (JGI) 3300000573 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS No Yes stringe@lbl.gov Susannah Tringe Yes 25991679 Environmental Aquatic Wetlands Marine Sediment Wetland 38.107057 -121.647578 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300039890 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 096B_R1 University of Maryland 3300039890 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.71677778 27.10111111 23095723 46909 70 3 99 7 0.0 Metagenome 3300053148 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere DOE Joint Genome Institute (JGI) 3300053148 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121316 -123.26986 650077968 992386 161 168 224 171 Unrestricted 16.22 Metagenome 3300033067 *Microbiome Finished Seoul Wastewater Treatment Plant Virome, South Korea Freshwater viral community from Junglang river, upstream of Junglang wastewater treatment plant effluent, Seoul, South Korea v.1 Macrogen 3300033067 Metagenome Analysis SPAdes v. 3.10.1 released by JGI data releasing policy No Yes chojc@inha.ac.kr Jang-Cheon Cho No Environmental Aquatic River Freshwater Unclassified Freshwater 37.556156 127.069036 58870967 85655 0 0 0 0 0.0 Metagenome 3300012512 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.old.270510 DOE Joint Genome Institute (JGI) 3300012512 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 178066447 474876 296 24 639 41 SRX3527426 Unrestricted 0.0 Metagenome 3300022398 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1BM1 JM34 AGRF 3300022398 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 44064950 76225 27 2 38 0 0.0 Metagenome 3300029873 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37652 Beijing Genomics Institute (BGI) 3300029873 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 240288477 300548 197 1 250 2 0.0 Metagenome 3300049337 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CBF1 DOE Joint Genome Institute (JGI) 3300049337 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 318380381 879134 377 7 743 14 Unrestricted 6.81 Metagenome 3300005785 *Microbiome Permanent Draft Deep-sea sediment bacterial and archaeal communities Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten VI Center for Biotechnology (CeBiTec), Bielefeld Univeristy 3300005785 Metagenome Analysis Idba_ud 1.1.1 released per JGI data release policy No Yes jrapp@mpi-bremen.de Josephine Rapp No Environmental Aquatic Oceanic Marine Sediment sediment 77.978277 0.163645 26085049 50273 31 4 60 6 0.0 Metagenome 3300025978 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleB_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025978 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.107521 -121.649681 135987490 319989 224 2 373 5 SRX7146198 Unrestricted 0.0 Metagenome 3300054063 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_17_40 re-annotation DOE Joint Genome Institute (JGI) 3300054063 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 370372513 754133 182 5 323 8 SRX3005980 0.0 Metagenome 3300043421 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Watershed 3 Stream, North Woodstock, New Hampshire, USA - watershed3_2019_sw_WHONDRS-S19S_0084 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043421 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 43.9547 -71.7227 300661400 483194 328 143 585 204 Unrestricted 17.17 Metagenome 3300006133 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t1_693P_control - viral_metagenome University of Texas Southwestern Medical Center 3300006133 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 102242439 199850 90 0 134 0 0.0 Metagenome 3300027082 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine sediment microbial community from Fremont, CA, USA - Pond A23 Sediment 1 (SPAdes) DOE Joint Genome Institute (JGI) 3300027082 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Enviromental 37.475383 -121.9729 197884011 382809 193 7 360 10 SRX3302446 Unrestricted 0.0 Metagenome 3300020234 *Microbiome Permanent Draft Deep-sea sediment microbial communities from the Pacific Ocean trenches Deep-sea sediment microbial communities from the Kermadec Trench, Pacific Ocean - N074 JGI facility at Oak Ridge National Laboratory 3300020234 Metagenome Analysis Megahit released by Logan Peoples No Yes lpeoples@ucsd.edu Logan Peoples No Environmental Aquatic Oceanic Marine Sediment sediment -34.34030667 -178.1757117 1015471624 1290424 269 2 344 6 0.0 Metagenome 3300045435 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-533 Genome Quebec 3300045435 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 55.445634 -129.353516 1152057281 2549241 535 130 939 221 0.0 Metagenome 3300030430 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_048 - TARA_R100000426 CEA Genoscope 3300030430 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -9.3921 66.4228 199614094 439435 34 0 61 0 0.0 Metagenome 3300031786 *Microbiome Permanent Draft Freshwater fungal communities from various locations Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124 DOE Joint Genome Institute (JGI) 3300031786 Metagenome Analysis spades v. 3.12.0 Yes Yes tyjames@umich.edu Timothy Y. James No Environmental Aquatic Lake Freshwater Lake biofilm freshwater 41.8268 -83.1913 3081199298 6585894 1145 387 1608 625 SRX6422164 Unrestricted 16.24 Metagenome 3300014311 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D1 DOE Joint Genome Institute (JGI) 3300014311 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jzz0026@lbl.gov; sgtringe@lbl.gov Jinglie Zhou; Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.05241603 -121.76907401 327069936 776664 364 3 736 8 SRX7182402 Unrestricted 0.0 Metagenome 3300049165 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S16_C_D45 hydrophilic DOE Joint Genome Institute (JGI) 3300049165 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 649730057 1150657 351 36 622 40 Unrestricted 36.15 Metagenome 3300048768 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 E2 30-34 DOE Joint Genome Institute (JGI) 3300048768 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.0467 434865162 669478 193 0 301 0 Restricted 13.48 Metagenome 3300025153 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - frozenSSSS metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025153 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca Ramunas Stepanauskas; Peter Dunfield No Environmental Aquatic Ice Freshwater Glacier Glacier valley 81.017 -81.583 785288905 1312725 441 45 580 64 SRX3006940 Unrestricted 0.0 Metagenome 3300069404 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_002-M-20170625-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069404 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 3014761 9491 34 0 63 2 0.0 Metagenome 3300009147 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300009147 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Host-associated Plants Rhizosphere Roots Soil Populus rhizosphere 35.8443 -83.9607 4950567071 8978226 2232 39 3544 83 SRX2748706, SRX2748707 Unrestricted 0.0 Metagenome 3300043112 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B6.10_Sample6.Rodeo10.Well662 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043112 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 223825109 381116 222 0 281 0 SRX8355719 Unrestricted 61.69 Metagenome 3300040635 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - NIWO_042-M-20160828-COMP-DNA1 Battelle Memorial Institute 3300040635 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.05425 -105.58237 2460514 7752 25 3 50 2 0.0 Metagenome 3300014103 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Vietnam to Iowa, USA - VN2 Iowa State University 3300014103 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 18902697 35713 0 1 0 0 SRX1150317 0.0 Metagenome 3300055279 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 P3 1-5 (version 2) DOE Joint Genome Institute (JGI) 3300055279 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3535 19.0473 1795547049 2812425 349 51 601 57 Restricted 0.0 Metagenome 3300042749 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_14-Oct-14 NMDC pilot DOE Joint Genome Institute (JGI) 3300042749 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 120471167 284848 241 44 462 76 SRX2838985 0.0 Metagenome 3300033688 *Microbiome Permanent Draft Marine Fish Microbial Metagenomes Atlantic cod gut microbial communities from S?r?ya, Atlantic Ocean - S_04 Centre for Ecological and Evolutionary Synthesis (CEES), University of Oslo 3300033688 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton No Host-associated Fish Intestine Digestive system Unclassified fish gut 70.753712 22.061373 35173563 53764 56 1 46 1 0.0 Metagenome 3300033407 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175 DOE Joint Genome Institute (JGI) 3300033407 Metagenome Analysis spades v. 3.13.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9888 -108.3994 3461332810 7138717 1937 29 3052 54 SRX7077485 Unrestricted 0.0 Metagenome 3300025398 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE15Jun09 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025398 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 143572708 297738 88 39 111 57 SRX2565204 Unrestricted 0.0 Metagenome 3300012514 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.old.130510 DOE Joint Genome Institute (JGI) 3300012514 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Environmental Terrestrial Unclassified Soil Unclassified soil 35.9076 -79.0506 179306501 478681 310 14 630 35 SRX3527427 Unrestricted 0.0 Metagenome 3300011337 *Microbiome Finished Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan Chunlab, Inc 3300011337 Metagenome Analysis SPAdes 3.8.2 released by JGI data releasing policy No Yes chojc@inha.ac.kr; krmoon518@gmail.com Jang-Cheon Cho; Kira Moon No Environmental Aquatic River Freshwater Unclassified Freshwater 37.6518694 126.72164723 15713993 22094 0 0 0 0 0.0 Metagenome 3300020561 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 22APR2009 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020561 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 155496197 348493 187 72 246 101 SRX1987722 Unrestricted 0.0 Metagenome 3300002785 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A4-10 DOE Joint Genome Institute (JGI) 3300002785 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 259017 898 28 1 54 0 SRX1991119 Unrestricted 0.0 Metagenome 3300009609 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890 DOE Joint Genome Institute (JGI) 3300009609 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9223 -106.9517 703260862 1419056 534 25 998 46 SRX2754307 Unrestricted 0.0 Metagenome 3300048555 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_200729.NP1 DOE Joint Genome Institute (JGI) 3300048555 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 525868810 1119458 375 107 570 214 Unrestricted 10.79 Metagenome 3300013841 *Microbiome Permanent Draft Insectivorous bat viral communities from France Insectivorous bat viral communities from France - b3 Institut Pasteur, Paris, France 3300013841 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Multiple organs Multiple systems Pooled tissues Bat tissue 7527882 11737 20 15 46 33 SRX590184 0.0 Metagenome 3300013167 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100304 University of Pennsylvania 3300013167 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 33501880 64327 14 0 26 0 SRX756597 0.0 Metagenome 3300002317 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP03-I5 3300002317 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300001534 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-PF-7A)- 1 week illumina University of Tennessee 3300001534 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 368717732 1292224 645 26 1141 55 0.0 Metagenome 7000000491 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 338793263 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000491 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 52101775 107010 0 0 0 0 0.0 Metagenome 3300050030 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-F1(2) 20-24 DOE Joint Genome Institute (JGI) 3300050030 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0433 637292775 1015347 274 1 453 1 Restricted 0.0 Metagenome 3300005406 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG DOE Joint Genome Institute (JGI) 3300005406 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 1724258953 5202057 1110 33 2005 68 SRX2745014 Unrestricted 0.0 Metagenome 3300006041 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 DOE Joint Genome Institute (JGI) 3300006041 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment watersheds 41.5935 -78.5142 3109318550 11490554 2949 113 5520 237 SRX2839552 Unrestricted 0.0 Metagenome 3300045567 *Microbiome Draft Lake microbial communities from Canada Lake sediment microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-462 Genome Quebec 3300045567 Metagenome Analysis MEGAHIT v1.0.6 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Lake Sediment 49.236235 -122.97178 151167186 210937 58 4 96 10 0.0 Metagenome 3300003462 *Microbiome Permanent Draft Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S13-SC02A 3300003462 Metagenome Analysis released per JGI data releasing policy No Yes julie.champagne@cnrc-nrc.gc.ca Julie Champagne No Environmental Aquatic Neritic zone/Coastal water Marine Sediment Marine sediment 53.6667 -129.1333 89228001 332783 93 1 257 2 0.0 Metagenome 3300038634 *Microbiome Permanent Draft Barley rhizosphere microbial communities from Potsdam, Germany Barley rhizosphere microbial communities from Potsdam, Germany - 563_E University of Dundee 3300038634 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Host-associated Plants Rhizosphere Roots Soil Barley rhizosphere 52.404151 12.96107 12330327 35671 137 14 196 33 ERX604044 0.0 Metagenome 3300006961 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada T0 (2) T34 (live) enrichments of Methanogenic microbial communities using Athabascan oil sands Shell Corporation 3300006961 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 23869084 41797 23 0 37 0 0.0 Metagenome 3300043828 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from YNP geothermal spring, Wyoming, USA - Conch_B DOE Joint Genome Institute (JGI) 3300043828 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Sediment 44.5564 -110.8321 56456868 97195 36 3 41 0 Unrestricted 836.09 Metagenome 3300017775 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 55 SPOT_SRF_2014-07-17 DOE Joint Genome Institute (JGI) 3300017775 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 479820489 1261503 94 79 138 163 SRX7207534, SRX7207535 Unrestricted 0.0 Metagenome 3300014524 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00463 Weill Cornell Medical College 3300014524 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.68 -73.98 35285630 51975 14 0 24 0 SRX822432 0.0 Metagenome 3300001450 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-53 DOE Joint Genome Institute (JGI) 3300001450 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 49.5666 -138.6666 529111718 1209693 29 9 45 17 SRX3316460 Unrestricted 0.0 Metagenome 3300045589 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - DMB5_7SRT_A DOE Joint Genome Institute (JGI) 3300045589 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35894622 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 154686420 205304 150 7 159 5 SRX12654476 Unrestricted 106.5 Metagenome 3300025799 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_CordB_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025799 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 37.928627 -122.504829 237114107 441292 191 1 302 2 SRX7142924 Unrestricted 0.0 Metagenome 3300042348 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME20Jul2014-rr0787 DOE Joint Genome Institute (JGI) 3300042348 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 778436923 1264560 319 39 451 70 Unrestricted 16.65 Metagenome 3300021492 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-9-10_MG DOE Joint Genome Institute (JGI) 3300021492 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.0114 -110.5956 138435750 304837 228 3 339 3 SRX3982281 Unrestricted 19.53 Metagenome 3300031945 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082 DOE Joint Genome Institute (JGI) 3300031945 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 2280064026 5127206 736 27 1354 58 SRX5820632 Unrestricted 9.48 Metagenome 3300009415 *Microbiome Permanent Draft Genome and metagenome analysis of marine red algae Porphyra Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex1 metaG DOE Joint Genome Institute (JGI) 3300009415 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes brawley@maine.edu, Brawley@maine.edu Susan Brawley No Host-associated Algae Unclassified Red algae Unclassified Marine 50.677 -3.24 417938310 706969 1883 32 3387 60 SRX2999534 Unrestricted 0.0 Metagenome 3300029383 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 077_5_3_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029383 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 85106132 100404 73 1 96 0 0.0 Metagenome 3300005545 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG DOE Joint Genome Institute (JGI) 3300005545 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 4476071064 12583856 3265 97 5658 198 SRX2744869 Unrestricted 0.0 Metagenome 3300026158 *Microbiome Permanent Draft Anaerobic reactors microbiome study Activated sludge microbial communities from lab. scaled anaerobic digester in Belvaux, Luxembourg - ACS2-29 University of Luxembourg 3300026158 Metagenome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 49.506216 5.943617 268906056 318657 83 3 216 4 0.0 Metagenome 3300061685 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0600 Microbiome Insights 3300061685 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 408792282 554842 98 4 175 8 0.0 Metagenome 3300013189 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100748 University of Pennsylvania 3300013189 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 24707867 43339 26 7 65 14 SRX756102 0.0 Metagenome 3300027276 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Rumen-fistulated moose microbial communities from Alaska, USA - LMS_cellobiose_enrichment (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027276 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton No Host-associated Mammals Stomach Digestive system Rumen fluid Rumen-fistulated moose 61.566367 -149.2538247 288227685 417227 373 1 460 2 SRX2752462 Unrestricted 0.0 Metagenome 3300011459 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00211 Weill Cornell Medical College 3300011459 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.98 20312255 22664 8 0 14 1 SRX822190 0.0 Metagenome 3300009468 *Microbiome Permanent Draft Host-associated microbial communities of aphids from plants in several locations around USA Microbial communities of aphids from Rosa in Tucson, AZ, USA - Wahlgreniella nervata seqcov University of Texas, Austin 3300009468 Metagenome Analysis CLC Genomics released per JGI data release policy Yes Yes becky.chong@utexas.edu Rebecca Chong No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Rosa 32.23184 -110.950699 199344178 114333 1 1 2 2 0.0 Metagenome 3300011824 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00303 Weill Cornell Medical College 3300011824 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.75 -73.98 46790833 61121 18 0 26 0 SRX822276 0.0 Metagenome 3300001261 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 27AUG2008 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300001261 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 11070795 27227 26 3 40 11 SRX3310950 Unrestricted 0.0 Metagenome 3300042656 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Trinervitermes sp. from JKUAT Farm, Juja, Kenya - TD114a Eurofins MWG Operon 3300042656 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut -1.0873056 37.0078946 887364795 908999 85 15 106 19 0.0 Metagenome 3300000606 *Microbiome Permanent Draft Abyssal marine microbial communities from the Mediterranean Sea Abyssal marine microbial communities from the Mediterranean Sea - kryos-hsr2-ac-contigs Fidelity Systems Inc 3300000606 Metagenome Analysis released per JGI data release policy No Yes francesco.smedile@iamc.cnr.it, francesco.smedile14@gmail.com francesco smedile, Francesco Smedile No Environmental Aquatic Oceanic Marine Abyssal plane Abyssal marine 34.93 22.22 0 0 0 0 0 0 0.0 Metagenome 3300049822 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 DOE Joint Genome Institute (JGI) 3300049822 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.40849 -82.168434 1862197387 2950723 700 51 1050 79 Unrestricted 17.14 Metagenome 3300012321 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100436 University of Pennsylvania 3300012321 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 18016430 35428 7 2 19 1 SRX756562 0.0 Metagenome 3300038393 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from bulk soil in EcoFAB chamber, Walnut Creek, California, United States - Soil-Nitrogen_C SG_7 DOE Joint Genome Institute (JGI) 3300038393 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9315 -122.0212 2643370006 4284404 798 56 1225 91 Unrestricted 21.86 Metagenome 3300029830 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36034 Beijing Genomics Institute (BGI) 3300029830 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 182375223 241380 174 1 244 2 0.0 Metagenome 3300040602 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_004-M-20130701-COMP-DNA1 Argonne National Laboratory 3300040602 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 1713849 5301 26 0 40 1 ERX2133941 0.0 Metagenome 3300009826 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1 DOE Joint Genome Institute (JGI) 3300009826 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 5.0626 -53.0462 4118462945 6836016 2932 82 5045 171 SRX2525417 Unrestricted 0.0 Metagenome 3300022690 *Microbiome Permanent Draft Deep seafloor sediment microbial communities from Yap Trench, western Pacific Ocean Marine sediment microbial community from Yap Trench, western Pacific Ocean - JL-Dive109-S09 Third Institute of Oceanography, State Oceanic Administration 3300022690 Metagenome Analysis idba v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Sediment Marine Unclassified sediment 9.898601 138.3861 1386018186 2584048 210 7 495 7 0.0 Metagenome 3300060895 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Lower Teakettle, Sierra National Forest, California, USA - TEAK_005-M-20210728-comp-1 DOE Joint Genome Institute (JGI) 3300060895 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 37.058229 -118.988578 1962208025 3405908 652 147 1215 196 Unrestricted 16.12 Metagenome 3300034268 *Microbiome Permanent Draft Forest soil microbial communities from Eldorado National Forest, California, USA Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2 DOE Joint Genome Institute (JGI) 3300034268 Metagenome Analysis metaspades v. 3.13.0 Yes Yes ndove7@gmail.com Nicholas Dove No Environmental Terrestrial Temperate forest Soil Bulk soil soil 38.7833 -120.2976 2339866902 5705269 1619 166 2926 262 SRX7659676 Unrestricted 8.91 Metagenome 3300046729 *Microbiome Permanent Draft Soil microbial communities from Blodgett Forest Research Station, California, USA Soil microbial communities from Blodgett Forest Research Station, California, USA - BWE201506022C1020 DOE Joint Genome Institute (JGI) 3300046729 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.9122 -120.6612 168450223 300398 233 31 488 39 Unrestricted 15.94 Metagenome 3300044499 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_133 DOE Joint Genome Institute (JGI) 3300044499 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 815277571 1791472 503 7 977 17 Unrestricted 8.36 Metagenome 7000000382 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160765029 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000382 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 13394289 28525 0 0 0 0 0.0 Metagenome 3300004011 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D2 DOE Joint Genome Institute (JGI) 3300004011 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.197227 -122.010124 884090384 2729450 981 13 2088 24 SRX7142759 Unrestricted 0.0 Metagenome 3300041935 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from the Rocky Mountain Biological Laboratory (RMBL), Gothic, Colorado, United States - 2009WM_2W DOE Joint Genome Institute (JGI) 3300041935 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9595 -106.99 92802351 290267 210 21 346 35 SRX14810895 Unrestricted 5.61 Metagenome 3300050457 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - W6W16 DOE Joint Genome Institute (JGI) 3300050457 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 175782384 317322 219 76 433 87 Unrestricted 16.95 Metagenome 3300028370 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #497 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028370 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 162583427 269917 89 23 120 38 SRX3295858 Unrestricted 0.0 Metagenome 3300020526 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 21JUN2010 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020526 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 109595559 226344 110 9 190 15 SRX1988905 Unrestricted 0.0 Metagenome 3300000530 *Microbiome Permanent Draft Acid mine drainage (AMD) microbial communities from Fan Kou Mine, Shaoguan city, Guangdong Province, China Acid mine drainage (AMD) microbial communities from Fan Kou Mine, Shaoguan city, Guangdong Province, China - PRO_U Macrogen 3300000530 Metagenome Analysis released per JGI data release policy No Yes humin@soil.gd.cn Hu min No Environmental Aquatic Groundwater Freshwater Mine drainage Acid mine drainage 24.814784 113.602638 4.5 5290185 8196 5 0 7 0 0.0 Metagenome 3300026634 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2015_1_7 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026634 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 6754109 8212 5 0 9 0 SRX2925230 Unrestricted 0.0 Metagenome 3300008954 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um Georgia Genomics Facility 3300008954 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 1082998891 1255651 407 43 525 39 0.0 Metagenome 3300027747 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300027747 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 46.8319 -72.5 767376857 1478591 387 91 518 161 SRX2955014 Unrestricted 0.0 Metagenome 3300035117 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 DOE Joint Genome Institute (JGI) 3300035117 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1125 -122.987 1040025683 2484337 666 53 1138 81 SRX8289636 Unrestricted 6.96 Metagenome 3300029529 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI022007-93 Beijing Genomics Institute (BGI) 3300029529 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 102465379 143342 86 1 142 2 0.0 Metagenome 3300048644 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from North Pacific Ocean - CTD-AT42-06-001-2750m-0.65 DOE Joint Genome Institute (JGI) 3300048644 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 8.3721 -104.3746 586848700 951314 303 38 472 54 Unrestricted 30.41 Metagenome 3300047533 *Microbiome Permanent Draft Floating fern leaf microbial communities from various locations Floating fern leaf microbial communities from Tabasco, Mexico - 4139_IRRI DOE Joint Genome Institute (JGI) 3300047533 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dave.armitage@gmail.com David Armitage No Host-associated Plants Phylloplane/Leaf Phyllosphere Endophytes Leaf 18.1922 -92.9719 26446120 27509 10 3 11 3 Unrestricted 799.94 Metagenome 3300070307 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_007-M-20171114-COMP-DNA1 3300070307 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 51163473 147214 91 4 182 6 0.0 Metagenome 3300045064 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Plains ecozone, Canada - Lake 04-612 Genome Quebec 3300045064 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 60.721344 -114.996196 919007830 2068092 549 107 929 206 0.0 Metagenome 3300014027 *Microbiome Permanent Draft Cow manure microbial communities enriched on apple pomace, Yangling, Shaanxi, China Cow manure microbial communities enriched on apple pomace, Yangling, Shaanxi, China - Mat30 Northwest A&F University 3300014027 Metagenome Analysis SOAPdenovo released by JGI data releasing policy No Yes manzhou@nwafu.edu.cn Man Zhou No Engineered Solid waste Manure Animal waste Unclassified compost 34.28 108.08 203224645 284286 92 12 138 17 0.0 Metagenome 3300043466 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Aug2000-rr0310 DOE Joint Genome Institute (JGI) 3300043466 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1101973408 1670774 381 11 486 12 Unrestricted 17.51 Metagenome 3300060746 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Lower Teakettle, Sierra National Forest, California, USA - TEAK_003-M-20210726-comp-1 DOE Joint Genome Institute (JGI) 3300060746 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 37.012962 -119.010619 1095983641 2023617 554 109 984 156 Unrestricted 20.99 Metagenome 3300042062 *Microbiome Permanent Draft Deep-sea coral associated microbial communities from Gulf of Mexico, USA Deep-sea coral microbial communities from Gulf of Mexico, USA - 16337 AT357 S25-1 Ecosystem Impacts of Oil and Gas Inputs to the Gulf Consortium, The Pennsylvania State University 3300042062 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Invertebrates Coral Cnidaria Unclassified Deep-sea coral 27.587 -89.705 499292994 586260 6 17 9 66 SRX6911447 0.0 Metagenome 3300001037 *Microbiome Permanent Draft Lignocellulose-degrading enriched microbial communities from Concordia, Entre Rios, Argentina CMC-Pine-T1 INDEAR Instituto de Agrobiotecnologia Rosario 3300001037 Metagenome Analysis released per JGI data release policy No Yes reinert.md@gmail.com, marina.reinert@indear.com Marina Reinert No Engineered Lab enrichment Unclassified Unclassified Unclassified Lignocellulose-degrading enriched -31.372253 -58.116672 30458256 45168 26 0 38 0 0.0 Metagenome 3300045944 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P24SSC2_190915_i DOE Joint Genome Institute (JGI) 3300045944 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 960260460 1483104 277 6 444 15 SRX20650324 Unrestricted 12.26 Metagenome 3300045402 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-540 Genome Quebec 3300045402 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 54.574531 -123.807885 992137972 2248548 371 136 631 182 0.0 Metagenome 3300022884 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1502 DOE Joint Genome Institute (JGI) 3300022884 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 179261304 385027 165 0 280 1 SRX4397539 Unrestricted 10.51 Metagenome 3300041709 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_50 MetaG AgResearch, New Zealand, Mosgeil 3300041709 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1231211637 2688416 413 22 1143 54 0.0 Metagenome 3300042942 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-333 Genome Quebec 3300042942 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.915259 -120.2769 1386669388 2940570 492 139 838 241 0.0 Metagenome 3300022219 *Microbiome Permanent Draft Lab enrichment of drill cuttings microbial communities from oil reservoir in Mossoro region, Brazil - 42 Lab enrichment of drill cuttings microbial communities from oil reservoir in Mossoro region, Brazil - 42 Federal University of Rio Grande do Norte 3300022219 Metagenome Analysis Geneious 9.1.2 released by JGI data releasing policy No Yes lfagnez@ufrnet.br Lucymara Agnez-Lima No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil reservoir sediment -5.1841 -37.3478 1139536074 4972000 11378 0 20826 9 0.0 Metagenome 3300064812 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 678 in Boyle, Alberta, Canada - S00JY_0733 Microbiome Insights 3300064812 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 54.40412255 -112.5854583 13418381 18111 13 0 30 0 0.0 Metagenome 3300025882 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC052_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025882 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 42.12 -87.65 835572115 1538541 541 13 766 14 SRX2338863 Unrestricted 0.0 Metagenome 3300021381 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2016_1, 0.02 Toyama Prefectural University 3300021381 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Unclassified marine 36.96723 137.36471 35611806 86115 6 1 15 3 0.0 Metagenome 3300016341 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 DOE Joint Genome Institute (JGI) 3300016341 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Unclassified Soil 18.321 -65.8172 3061783625 6597800 1114 41 2067 86 SRX5635108, SRX3604195 Unrestricted 0.0 Metagenome 3300069348 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_051-M-20170614-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069348 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 43828104 131744 84 18 149 20 0.0 Metagenome 3300013243 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100658 University of Pennsylvania 3300013243 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 30924735 77239 22 0 37 0 SRX756436 0.0 Metagenome 3300001906 *Microbiome Permanent Draft Contaminated subsurface sediment microbial communities from Dusseldorf, Germany, analyzing toluene degradation Contaminated subsurface sediment microbial communities from Dusseldorf, Germany, analyzing toluene degradation - Fos_Dus_116 3300001906 Metagenome Analysis de novo assembly algorithm of CLC Genomics Workbench released by JGI data releasing policy No Yes emnabouhajja@gmail.com Emna Bouhajja No Environmental Terrestrial Sediment Geologic Unclassified Contaminated subsurface sediment 51.21 6.46 32624 38 0 0 0 0 0.0 Metagenome 3300015685 *Microbiome Permanent Draft Microbial communities associated with sugarcane Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.5_G12 Universidade Estadual de Campinas 3300015685 Metagenome Analysis SPADES released by JGI data releasing policy No Yes scs.rafael@gmail.com Rafael Souza No Host-associated Plants Unclassified Roots Unclassified Root Endosphere -22.8187222 -47.05896667 9402264 8868 9 0 7 0 0.0 Metagenome 3300014236 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 176_L1_2014-5-5 San Diego State University 3300014236 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 872750 2450 22 11 33 30 0.0 Metagenome 3300024909 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 105_HOW12 (SPAdes) DOE Joint Genome Institute (JGI) 3300024909 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 36737238 55552 15 0 20 0 SRX2721180 Unrestricted 0.0 Metagenome 3300030057 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1 DOE Joint Genome Institute (JGI) 3300030057 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 915562553 2035418 567 117 930 186 SRX5799066 Unrestricted 8.66 Metagenome 3300012017 *Microbiome Permanent Draft Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1m Molecular Research LP (MR DNA) 3300012017 Metagenome Analysis metaSPAdes released by JGI data releasing policy No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.6244481 -80.9227115 8.22 330656869 1084651 63 5 147 13 0.0 Metagenome 3300035506 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver proximal colon microbial communities from Maple Ridge, British Columbia, Canada - Beaver3Prox.Colon1 DOE Joint Genome Institute (JGI) 3300035506 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Proximal colon proximal colon 49.18 -122.54 1008303578 1541673 366 17 491 28 SRX8345899 Unrestricted 11.14 Metagenome 3300033562 *Microbiome Permanent Draft Sinkhole microbial mat communities from Lake Huron, Michigan, USA Sinkhole microbial mat from Lake Huron, Michigan, USA - SG0343 University of Michigan 3300033562 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy Yes Yes sgrim01@gmail.com Sharon Grim No Environmental Aquatic Sinkhole Freshwater Unclassified microbial mat 45.19843 -83.32721 695775195 850365 237 26 285 23 0.0 Metagenome 3300001226 *Microbiome Permanent Draft Switchgrass rhizosphere microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere microbial communities from Knoxville, Tennessee, USA - P5 rhizosphere metagenome (combined) University of Tennessee 3300001226 Metagenome Analysis released per JGI data release policy No Yes jwang43@utk.edu Jun Wang No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 35.9606 -83.9208 9255055 50232 57 7 159 5 0.0 Metagenome 3300048060 *Microbiome Permanent Draft Marine and freshwater sediment microbial communities from various locations Marine sediment microbial communities from Mediterranean Sea - Mediterranean_Core_1_12-16_cm DOE Joint Genome Institute (JGI) 3300048060 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes smtechtm@mtu.edu Stephen Techtmann No Environmental Aquatic Sediment Marine Unclassified Marine sediment 31.971 30.142 376076141 1088101 506 2 873 0 Unrestricted 6.27 Metagenome 3300021230 *Microbiome Permanent Draft Environmental DNA from river Freshwater microbial communities from Jinzu River in Toyama Prefecture, Japan-20170104_1, 0.02 Toyama Prefectural University 3300021230 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic River Freshwater Unclassified freshwater 36.46646 137.24724 48414145 138213 15 1 31 1 0.0 Metagenome 3300012366 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100103 University of Pennsylvania 3300012366 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 478319 1529 4 0 11 0 SRX756727 0.0 Metagenome 3300003116 *Microbiome Permanent Draft Continuous culture Bioreactor microbial community inoculated with marine intertidal flat from German Wadden Sea Continuous culture bioreactor microbial community inoculated with marine intertidal flat from Wadden Sea, Germany - Culture-2_BmZ 3300003116 Metagenome Analysis Newbler v. 2.6 Made public because these are downloaded from Genbank No Yes nckyrpides@lbl.gov Geelhoed,J.S., Nikos Kyrpides No Engineered Bioreactor Effluent Anaerobic Unclassified Continuous culture Bioreactor 53.1163 8.8467 14423218 19614 15 0 25 0 0.0 Metagenome 3300046328 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_94 DOE Joint Genome Institute (JGI) 3300046328 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9223 -106.9493 574265643 1297536 913 282 1672 520 Restricted 0.0 Metagenome 3300024229 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 54D DOE Joint Genome Institute (JGI) 3300024229 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 273331055 624874 188 19 317 39 SRX4466170 Unrestricted 21.17 Metagenome 3300053123 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere DOE Joint Genome Institute (JGI) 3300053123 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121204 -123.271338 493328774 969398 241 89 385 126 Unrestricted 13.8 Metagenome 3300040440 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_002-M-30-7-20131112-GEN-DNA1 Argonne National Laboratory 3300040440 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 4120225 12437 33 8 62 11 0.0 Metagenome 3300025992 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_104 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025992 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 51685968 141772 119 2 230 8 SRX2564779, SRX2581045 Unrestricted 0.0 Metagenome 3300035445 *Microbiome Permanent Draft STAs constructed wetland biome Wetland sediment microbial communities from Everglades, Florida, USA - STA44-Sample04_1 Merge04 University of Florida 3300035445 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy No Yes ng.hanh24@gmail.com Hanh Nguyen No Environmental Aquatic Wetlands Freshwater Sediment sediment 26.38 -80.51 6.6-8.4 159493541 204063 93 0 138 0 0.0 Metagenome 3300006206 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - GF1 control_feces - microbial_metagenome University of Texas Southwestern Medical Center 3300006206 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 2202520 7396 2 0 8 4 0.0 Metagenome 3300025374 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring microbial streamer communities from Conch Spring, Yellowstone National Park, USA - CON_C (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025374 Metagenome Analysis spades v. 3.11.1 Yes Yes binskeep@montana.edu; jim.fredrickson@pnnl.gov William P. Inskeep; Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Alkaline Hot spring 44.376 -110.69 97476306 232572 53 2 59 0 SRX3316453 Unrestricted 0.0 Metagenome 3300051213 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Great Miami River, Cincinnati, Ohio, USA - greatmiami_2019_sw_WHONDRS-S19S_0099 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300051213 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 39.2386 -84.7123 675021657 1036504 210 132 305 159 Unrestricted 0.0 Metagenome 3300005950 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047 DOE Joint Genome Institute (JGI) 3300005950 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Soil 68.6137 -149.3144 594781166 2028752 452 49 852 123 SRX2739147 Unrestricted 0.0 Metagenome 3300002021 *Microbiome Permanent Draft Permafrost and active layer soil microbial communities from McGill Arctic Research Station (MARS), Canada, for enrichment studies Permafrost and active layer soil microbial communities from McGill Arctic Research Station (MARS), Canada, for enrichment studies - Sample_W1 3300002021 Metagenome Analysis released by JGI data releasing policy No Yes Tullis Onstott; Tatiana Vishnivetskaya; Karuna Chourey; Susan M. Pfiffner;Alice Layton No Environmental Terrestrial Unclassified Soil Permafrost Permafrost and active layer soil 79.26 -90.46 36263372 94205 68 0 111 0 0.0 Metagenome 3300032225 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime Ecozone, Canada - Lake 07-014 Genome Quebec 3300032225 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.018778 -64.59139 630679224 1240533 355 66 565 139 0.0 Metagenome 3300039568 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 049_R1_022417 University of Maryland 3300039568 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.99216667 25.71403333 114700982 234286 222 14 436 23 0.0 Metagenome 3300001863 *Microbiome Permanent Draft Trichloroethene dechlorinating bioreactor microbial communities from Berkeley, California, USA Trichloroethene dechlorinating bioreactor microbial communities from Berkeley, California, USA - LACBS006C 3300001863 Metagenome Analysis released by JGI data releasing policy No Yes benstenuit@gmail.com Benoit stenuit, Ben A. Stenuit No Engineered Bioremediation Chloroethene Tetrachloroethylene and derivatives Bioreactor Trichloroethene dechlorinating bioreactor 37.87 -122.26 59687141 99289 0 0 0 0 0.0 Metagenome 3300008650 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764143897 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008650 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 187365932 305135 177 1 283 1 0.0 Metagenome 3300026930 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN336 (SPAdes) DOE Joint Genome Institute (JGI) 3300026930 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 4884166 16512 59 5 84 9 SRX1986452 Unrestricted 0.0 Metagenome 3300006926 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG DOE Joint Genome Institute (JGI) 3300006926 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -16.21 -76.61 281657896 673003 37 0 53 0 SRX2929232 Unrestricted 0.0 Metagenome 3300003392 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM DOE Joint Genome Institute (JGI) 3300003392 Metagenome Analysis revert back to private per Christa Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 13940539 39374 147 6 261 12 SRX2574383 Unrestricted 0.0 Metagenome 3300024245 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK18 DOE Joint Genome Institute (JGI) 3300024245 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 162382317 429338 300 27 534 45 SRX4547519 Unrestricted 8.1 Metagenome 3300003974 *Microbiome Permanent Draft Rhopaloeides odorabile microbial communities from Davies Reef, Great Barrier Reef, Australia Rhopaloeides odorabile microbial communities from Davies Reef, Great Barrier Reef, Australia - sample1 3300003974 Metagenome Analysis IDBA-UD released by JGI data releasing policy Yes Yes n.webster@aims.gov.au Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Rhopaloeides odorabile -18.51 147.39 2921497113 10779088 5108 19 9350 59 0.0 Metagenome 3300049996 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2014 MH-S_10cm DOE Joint Genome Institute (JGI) 3300049996 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.2128 19.023 239583186 414779 255 16 500 19 Restricted 23.04 Metagenome 3300014895 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 599_B Beijing Genomics Institute (BGI) 3300014895 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 19602389 23570 14 0 18 0 ERX491261 0.0 Metagenome 3300011376 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00283 Weill Cornell Medical College 3300011376 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.72 -73.99 10193357 18296 3 6 5 3 SRX822256 0.0 Metagenome 3300034393 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 10HMS DOE Joint Genome Institute (JGI) 3300034393 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Sub-biocrust Soil Unclassified sub-biocrust soil 34.3778 -117.6098 170344005 460360 433 26 840 43 SRX7615459 Unrestricted 8.63 Metagenome 3300009153 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015 DOE Joint Genome Institute (JGI) 3300009153 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wilkins.231@osu.edu, mike.wilkins@colostate.edu Michael Wilkins No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0991 -99.1044 1297685440 2550325 842 8 1535 7 SRX2753775 Unrestricted 0.0 Metagenome 3300026463 *Microbiome Permanent Draft Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 CS6 DOE Joint Genome Institute (JGI) 3300026463 Metagenome Analysis spades v. 3.11.1 Yes Yes ccraft@indiana.edu Chris Craft No Environmental Aquatic Wetlands Freshwater Sediment sediment 31.3377 -81.4644 145142237 406555 306 2 565 12 SRX4796670 Unrestricted 6.7 Metagenome 3300039172 *Microbiome Finished Marine algae associated bacterial community from Sydney, Australia Marine algae associated bacterial community from Sydney, Australia - Ulva australis_2R6 Ramaciotti Centre for Genomics 3300039172 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes j.nappi@unsw.edu.au Jadranka Nappi No Host-associated Algae Unclassified Unclassified Unclassified Marine -33.990304 151.231529 261849556 383504 36 5 80 8 0.0 Metagenome 3300070592 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_003-M-20180626-COMP-DNA1 Battelle Memorial Institute 3300070592 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 45.831516 -122.018608 5.14-5.59 31441500 93600 66 3 109 8 0.0 Metagenome 3300017993 *Microbiome Permanent Draft Coastal wetland sediment microbial communities from the Mid-Atlantic and Southeast Atlantic Coast of USA, responding to salinity intrusion. Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3 DOE Joint Genome Institute (JGI) 3300017993 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Freshwater sediment 35.9061 -76.1569 609403130 1444046 574 15 1082 13 SRX4369410 Unrestricted 4.13 Metagenome 3300008011 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-20 DOE Joint Genome Institute (JGI) 3300008011 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 649014826 1210453 646 9 1026 18 SRX3198635 Unrestricted 0.0 Metagenome 7000000361 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 823052294 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000361 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 896379 2362 0 0 0 0 SRX024079 0.0 Metagenome 3300048499 *Microbiome Permanent Draft Marine and freshwater sediment microbial communities from various locations Freshwater sediment microbial communities from Lake Superior, Michigan, United States- Superior 1 (A) DOE Joint Genome Institute (JGI) 3300048499 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes smtechtm@mtu.edu Stephen Techtmann No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 46.6701 -84.8241 528131812 1335844 479 3 815 9 Unrestricted 13.4 Metagenome 3300042081 *Microbiome Permanent Draft Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - N_b19.1 Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042081 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1241 -89.1401 925067834 920928 3 5 9 11 SRX5234794 0.0 Metagenome 3300034158 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_06D_18 DOE Joint Genome Institute (JGI) 3300034158 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9144 -147.8354 810131834 2067780 995 17 1686 25 SRX7633910 Unrestricted 7.91 Metagenome 3300009398 *Microbiome Permanent Draft Microbial communities in swimming pool backwashes Microbial communities from sand-filter backwash in Singapore swimming pools - JW-2 Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300009398 Metagenome Analysis megahit released per JGI data release policy Yes Yes martintayqx@gmail.com Martin Tay No Engineered Built environment Unclassified Unclassified Unclassified Swimming pool sandfilter backwash 1.28967 103.85007 165808734 368421 86 72 137 95 0.0 Metagenome 3300018027 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex DOE Joint Genome Institute (JGI) 3300018027 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 .3 856036770 1845397 718 22 1314 41 SRX3938851 Unrestricted 5.56 Metagenome 3300027026 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and P1 (2) (SPAdes) DOE Joint Genome Institute (JGI) 3300027026 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 117816321 166887 69 0 82 0 SRX3311662 Unrestricted 0.0 Metagenome 3300013733 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100458 University of Pennsylvania 3300013733 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 19201929 45129 15 0 30 2 SRX756540 0.0 Metagenome 3300032249 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime Ecozone, Canada - Lake 07-055 Genome Quebec 3300032249 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.921603 -67.657604 647254112 1296611 379 75 657 118 0.0 Metagenome 3300044644 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME12Oct2012-rr0940 DOE Joint Genome Institute (JGI) 3300044644 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1046266406 1607896 403 87 512 114 Unrestricted 22.96 Metagenome 3300011595 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00618 Weill Cornell Medical College 3300011595 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.8 -73.91 23487301 38490 14 0 16 0 SRX822585 0.0 Metagenome 3300014746 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00185 Weill Cornell Medical College 3300014746 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.65 -74.0 30279721 44103 20 0 25 0 SRX822164 0.0 Metagenome 3300064820 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 681 in Dapp, Alberta, Canada - S00JY_0343 Microbiome Insights 3300064820 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 54.22361285 -113.5355333 103805582 143800 52 2 88 1 0.0 Metagenome 3300025861 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC035_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025861 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 39.84 -89.0 767290509 1440611 679 1 1069 4 SRX2157890 Unrestricted 0.0 Metagenome 3300025147 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - ?SSSS metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025147 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca Ramunas Stepanauskas; Peter Dunfield No Environmental Aquatic Ice Freshwater Glacier Glacier valley 81.017 -81.583 716024491 1303309 447 28 656 54 SRX2525376 Unrestricted 0.0 Metagenome 3300021362 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09 DOE Joint Genome Institute (JGI) 3300021362 Metagenome Analysis spades v. 3.11.1-check Yes Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified exposed rock -19.28 -43.5919 1237884580 3180386 1027 68 1891 119 SRX4020654 Unrestricted 8.2 Metagenome 3300035429 *Microbiome Permanent Draft Mouse fecal microbial communities from various locations Fecal microbial communities from mouse strain Swiss web in Sweden - S Fe14 Beijing Genomics Institute (BGI) 3300035429 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 57.69745 11.98583 120243238 134793 156 0 191 0 0.0 Metagenome 3300033178 *Microbiome Permanent Draft Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_31_05-R1 DOE Joint Genome Institute (JGI) 3300033178 Metagenome Analysis spades v. 3.13.0 Yes Yes ziels@mail.ubc.ca Ryan Ziels Yes 35477253 Engineered Bioreactor Unclassified Anaerobic Unclassified sludge 51.9691 5.6654 527821952 809056 496 1 618 1 SRX7542596 Unrestricted 38.69 Metagenome 3300040999 *Microbiome Permanent Draft Paddy soil microbial communities from Vercelli, Italy Paddy soil microbial communities from Vercelli, Italy - timepoint4 Max Planck Institute for Terrestrial Microbiology 3300040999 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes bei@mpi-marburg.mpg.de Qicheng Bei No Environmental Terrestrial Paddy field/soil Soil Unclassified Paddy soil 45.3241611 8.37385833 415893062 593379 73 3 163 4 0.0 Metagenome 3300038850 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample04 King Abdulaziz City for Science and Technology (KACST) 3300038850 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 17.59 39.47 29093728 82160 50 0 91 0 SRX1097598 0.0 Metagenome 3300028909 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_1 DOE Joint Genome Institute (JGI) 3300028909 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 1178596134 2314557 613 162 863 274 SRX5355823 Unrestricted 0.0 Metagenome 3300027237 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1554B-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027237 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2871 -123.9424 103683165 226233 150 37 228 53 SRX2753733 Unrestricted 0.0 Metagenome 2058419009 *Microbiome Permanent Draft Feline fecal microbial communities from Illinois, USA cat metagenome 3 Research and Testing Laboratory 2058419009 Metagenome Analysis seqman NGEN transcriptome released per JGI data release policy No Yes sdowd@pathogenresearch.org Scot E. Dowd No Host-associated Mammals Large intestine Digestive system Fecal Feline fecal 40.11 -88.4 89561346 262645 178 0 281 0 0.0 Metagenome 3300044940 *Microbiome Permanent Draft Microbial mat bacterial communities from hot springs in Waikite Valley, Taupo Volcanic Zone, New Zealand Microbial mat bacterial communities from hot spring in Waikite Valley, New Zealand - LMW_ETR_NZ_2018_Waikite_4_1 DOE Joint Genome Institute (JGI) 3300044940 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes LMWARD@post.harvard.edu Lewis Ward No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats microbial mat -38.3276 176.3016 684926652 883301 304 22 371 33 Unrestricted 41.91 Metagenome 3300056764 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB26 DOE Joint Genome Institute (JGI) 3300056764 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 93778710 230982 187 6 378 4 Restricted 0.0 Metagenome 3300037385 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18A_1b_20_3 mgh University of Alberta 3300037385 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 61000242 76037 37 2 45 4 0.0 Metagenome 3300028229 *Microbiome Permanent Draft Utah desert microbiome from environmental samples near Hanksville, Utah, USA Rock biofilm microbial communities from Utah desert near Hanksville, Utah, USA - ND McGill University 3300028229 Metagenome Analysis canu v. 1.7 released by Catherine Maggiori No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Terrestrial Unclassified Soil Desert Rock biofilm 38.41734363 -110.78524736 522543 1462 0 0 0 0 0.0 Metagenome 3300046745 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_180425.NP2 DOE Joint Genome Institute (JGI) 3300046745 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 727186470 1519623 483 73 714 110 Unrestricted 11.79 Metagenome 3300025609 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Canada - AD_UKC130_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025609 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 49.25 -123.1 379418419 671260 397 4 552 7 SRX2338886 Unrestricted 0.0 Metagenome 3300029406 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 009_6_23_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029406 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 160712743 204531 97 0 144 0 0.0 Metagenome 2222084010 *Microbiome Permanent Draft Coastal lagoon microbial communities from Mar Menor and Albufera, Spain Coastal lagoon microbial communities from Mar Menor, Spain - Sample 1 University Miguel Hernandez 2222084010 Metagenome Analysis MIRA released per JGI data release policy No Yes cmellahernandez@gmail.com Claudia Mella Yes 22778901 Environmental Aquatic Unclassified Marine Unclassified Coastal lagoon 37.72955 -0.7741 17341949 36265 29 0 38 0 0.0 Metagenome 3300006789 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG DOE Joint Genome Institute (JGI) 3300006789 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.51 -76.2 553784173 1193973 57 0 96 0 SRX2928769 Unrestricted 0.0 Metagenome 3300040141 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 074_R1_022417 University of Maryland 3300040141 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.52648 19.01307 10916953 15039 18 2 18 5 0.0 Metagenome 3300042197 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Jordan River, Golan Heights, Israel - jordanrivershai5_2019_sw_WHONDRS-S19S_0058 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300042197 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 32.8993 35.6136 1280440108 1694735 457 47 680 75 Unrestricted 29.04 Metagenome 3300025468 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_120m (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025468 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 237760051 460816 178 3 260 12 Unrestricted 0.0 Metagenome 3300000845 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from University of Liverpool Illum_500pgPark_MetaVelvet University of Liverpool 3300000845 Metagenome Analysis MetaVelvet released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 7710007 21779 31 0 81 0 0.0 Metagenome 3300040214 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 063_R1_022417 University of Maryland 3300040214 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.52723 18.90282 9428680 17864 40 1 41 7 0.0 Metagenome 3300020409 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_A100001403 (ERX555912-ERR599106) CEA Genoscope 3300020409 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 34.835 34.8033 958618348 2458763 428 46 773 109 0.0 Metagenome 3300050248 *Microbiome Permanent Draft Freshwater microbial communities from Yellowstone Lake, Wyoming, United States Freshwater microbial communities from Yellowstone Lake, Wyoming, United States - 2017-08-10-9m DOE Joint Genome Institute (JGI) 3300050248 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.412 -110.335 603492524 926048 170 24 243 31 Restricted 25.72 Metagenome 3300014659 *Microbiome Permanent Draft Lettuce associated viral communities from produce distribution center in Michigan, USA Romaine lettuce associated viral communities from produce distribution center in Michigan, USA - FR5 Michigan State University 3300014659 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Romaine lettuce 919571 1970 20 10 38 12 SRX1432943 0.0 Metagenome 3300029138 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012072-43 Beijing Genomics Institute (BGI) 3300029138 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 76105084 103192 64 0 90 0 0.0 Metagenome 3300028735 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring microbial mat communities from Yellowstone National Park, WY, United States - YNP-CB-006-1 DOE Joint Genome Institute (JGI) 3300028735 Metagenome Analysis spades v. 3.11.1 Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment microbial mat 44.5772 -110.7892 649838034 1022244 351 14 453 31 SRX5356213 Unrestricted 72.99 Metagenome 3300061175 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Yellowstone NP, Wyoming, USA - YELL_012-O-20210708-comp-1 DOE Joint Genome Institute (JGI) 3300061175 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 44.944613 -110.433659 1813525940 3135710 674 122 1217 168 Unrestricted 17.98 Metagenome 3300006767 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC4 2012 metaG (SPADES assembly) (version 2) DOE Joint Genome Institute (JGI) 3300006767 Metagenome Analysis Spades 3.6.1 restored per Emiley Yes Yes eaeloefadrosh@lbl.gov, rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca Emiley Eloe-Fadrosh, Ramunas Stepanauskas; Peter Dunfield No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 49.9543 -116.5155 7.08 48340524 67243 39 0 45 0 SRX2839017 Unrestricted 0.0 Metagenome 3300009799 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N2_0_30 DOE Joint Genome Institute (JGI) 3300009799 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380273 -119.2723038 94578661 227274 200 7 420 17 SRX2523201 Unrestricted 0.0 Metagenome 3300069239 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Great Basin, Onaqui, Utah, USA - ONAQ_004-M-20210525-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069239 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Shrubland Soil Unclassified Terrestrial soil 40.185938 -112.47248 1824368543 3917662 1273 42 2392 38 0.0 Metagenome 3300013679 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00849 Weill Cornell Medical College 3300013679 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.71 -74.0 13829066 23284 7 0 9 0 SRX822815 0.0 Metagenome 3300051395 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D20_SEK2_2_to_SEK2 DOE Joint Genome Institute (JGI) 3300051395 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.245 490101000 980115 347 96 565 165 Unrestricted 15.63 Metagenome 3300037557 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Seawater microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR11_5 DOE Joint Genome Institute (JGI) 3300037557 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Unclassified seawater 47.7534 -127.7638 1280175407 2914074 881 304 1633 515 SRX9096396 Unrestricted 19.32 Metagenome 3300005383 *Microbiome Permanent Draft Marine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica Marine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica - Summer DOE Joint Genome Institute (JGI) 3300005383 Metagenome Analysis LUCY, PGA Assembler No Yes alison.murray@dri.edu Alison Murray No Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Marine -64.766667 -64.05 3325304 3486 5 0 7 0 0.0 Metagenome 3300025415 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE23Oct07 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025415 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 150423767 319083 104 30 192 48 SRX2565291 Unrestricted 0.0 Metagenome 3300041072 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - T4D7 IDBA-UD 100x Baseclear 3300041072 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 115307425 167301 116 7 186 8 0.0 Metagenome 3300029545 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P111V1 Beijing Genomics Institute (BGI) 3300029545 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 106942814 128473 74 0 89 0 0.0 Metagenome 3300027061 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027061 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 115297917 303991 156 17 264 20 SRX3311912 Unrestricted 0.0 Metagenome 3300036909 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 E1 20-24 DOE Joint Genome Institute (JGI) 3300036909 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.047 573611895 931680 192 23 307 33 SRX8138854 Unrestricted 13.88 Metagenome 3300006892 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Final time point T65 (1) (live) benzoate enrichments of Methanogenic microbial communities using Athabasca oil sands as inoculum Shell Corporation 3300006892 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 50309126 69927 52 1 80 3 0.0 Metagenome 3300037054 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPN2-1-X1 DOE Joint Genome Institute (JGI) 3300037054 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3628 19.0528 736818505 1398838 257 4 449 4 SRX8166973 Unrestricted 12.14 Metagenome 3300026850 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgHAC (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026850 Metagenome Analysis spades v. 3.11.1 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 37343531 119346 108 3 238 5 SRX2521237 Unrestricted 0.0 Metagenome 3300041699 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_290 MetaG AgResearch, New Zealand, Mosgeil 3300041699 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 769495996 1732996 356 32 1161 50 0.0 Metagenome 3300001076 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN575 DOE Joint Genome Institute (JGI) 3300001076 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.070856 -96.582821 5408780 18326 47 1 82 2 SRX3311837 Unrestricted 0.0 Metagenome 3300070254 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_009-O-20180919-COMP-DNA1 3300070254 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 16618877 49082 66 9 130 15 0.0 Metagenome 3300065595 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 793 in Claresholm, Alberta, Canada - S00JY_0289 Microbiome Insights 3300065595 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 50.0026073 -113.3303972 107425055 158032 54 1 76 1 0.0 Metagenome 3300003888 *Microbiome Permanent Draft Freshwater pond sediment microbial communities from Middleton WI, enriched by Humin and/or Glucose under anaerobic conditions Freshwater pond sediment microbial communities from Midddleton WI, HM 3/4 enriched by Glucose under anaerobic conditions -HM Sample 2 University of Wisconsin, Madison 3300003888 Metagenome Analysis CLC Genomic Workbench released per JGI data release policy Yes Yes jmejia@wisc.edu Jacqueline Mejia No Environmental Aquatic Sediment Freshwater Unclassified Anaerobic Enrichment Culture 43.0603 -89.5717 193262053 350418 123 1 199 0 0.0 Metagenome 3300044715 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME11Nov2003-rr0953 DOE Joint Genome Institute (JGI) 3300044715 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 855445926 1304677 328 41 400 67 Unrestricted 25.33 Metagenome 3300013092 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_150m DOE Joint Genome Institute (JGI) 3300013092 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; shallam@interchange.ubc.ca; jkjarett@lbl.gov Ramunas Stepanauskas; Steven Hallam; Jessica Jarett No Environmental Aquatic Lake Freshwater Unclassified freshwater 50.0621 -124.7214 703139429 1337046 737 5 1229 13 SRX3570897 Unrestricted 8.58 Metagenome 3300012496 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.090610 DOE Joint Genome Institute (JGI) 3300012496 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Environmental Terrestrial Unclassified Soil Unclassified unplanted soil 35.9076 -79.0506 109606572 296408 235 18 488 32 SRX3527516 Unrestricted 0.0 Metagenome 3300027753 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027753 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 681254297 1497316 683 80 1082 151 SRX2753550 Unrestricted 0.0 Metagenome 3300044768 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_121 DOE Joint Genome Institute (JGI) 3300044768 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 431084146 1129420 533 26 1006 29 Unrestricted 7.65 Metagenome 3300005830 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.178_YBM Oregon Health and Science University (OHSU) 3300005830 Metagenome Analysis unassembled released per JGI data release policy No Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Unclassified Sediment Unclassified sediment (intertidal) 46.17784 -123.85335 933501384 1906178 836 78 1445 120 0.0 Metagenome 3300027941 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 P3 (3) (SPAdes) DOE Joint Genome Institute (JGI) 3300027941 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 103211255 155939 59 0 98 0 SRX3311649 Unrestricted 0.0 Metagenome 3300025826 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025826 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 511805850 895389 423 9 621 19 SRX3197834 Unrestricted 0.0 Metagenome 3300023059 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0896-MG DOE Joint Genome Institute (JGI) 3300023059 Metagenome Analysis spades v. 3.11.1 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 343147704 550080 225 6 284 10 SRX4370376 Unrestricted 25.57 Metagenome 3300032183 *Microbiome Permanent Draft Microbial communities from various environments in Magnetic Island Reef, Townsville, Australia Sediment microbial communities from Magnetic Island Reef, Townsville, Australia - 36339 AGRF 3300032183 Metagenome Analysis SpAdes v. 3.13.0 released by JGI data releasing policy Yes Yes b.glasl@aims.gov.au Bettina Glasl No Environmental Aquatic Coastal Marine Sediment Sediment -19.1531 146.8641 460082705 1034211 94 30 266 36 0.0 Metagenome 3300032075 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3 DOE Joint Genome Institute (JGI) 3300032075 Metagenome Analysis spades v. 3.13.0 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Bulk soil soil 39.6475 -79.9369 3395200227 8416504 1985 64 3626 105 SRX5809338 Unrestricted 7.15 Metagenome 3300002271 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 13JUN2011 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002271 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 35801375 91651 88 12 172 25 SRX1989395 Unrestricted 0.0 Metagenome 3300008327 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 2, subject 763496533 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008327 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 56082941 73001 8 4 8 16 SRX024126 0.0 Metagenome 3300031209 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #439 DOE Joint Genome Institute (JGI) 3300031209 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 247720663 494202 135 25 193 37 SRX5649478 Unrestricted 47.28 Metagenome 3300009882 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA14 University of New South Wales 3300009882 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 42561289 68803 28 0 42 1 0.0 Metagenome 3300005529 *Microbiome Permanent Draft Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1 DOE Joint Genome Institute (JGI) 3300005529 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shadeash@msu.edu, shade.ashley@gmail.com Ashley Shade Yes 30397342 Environmental Terrestrial Unclassified Soil Unclassified Surface soil 40.7999 -76.3402 4046951418 9224963 2516 86 4140 184 SRX2839589 Unrestricted 0.0 Metagenome 3300025263 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025263 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 222072562 369615 112 1 147 0 SRX2770680 Unrestricted 0.0 Metagenome 3300043120 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Shale gas microbial communities from Fort St. John, British Columbia, Canada - UGR 12 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043120 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back shale gas 56.0 -122.0 108859829 173267 116 0 152 0 SRX8356884 Unrestricted 112.31 Metagenome 3300020582 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O DOE Joint Genome Institute (JGI) 3300020582 Metagenome Analysis spades v. 3.10.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 2554318182 5500127 831 163 1421 236 SRX4023980 Unrestricted 14.67 Metagenome 3300040792 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Salins du Lion, Vitrolles, France - D130 Genopole Toulouse Midi-Pyrenees 3300040792 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.45 5.2264 300327324 580045 244 25 473 50 0.0 Metagenome 3300049255 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Western Region, Iceland - Sphagnum magellanicum H1_MAG_ICE DOE Joint Genome Institute (JGI) 3300049255 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 2606698507 3109460 626 94 819 146 SRX14752860 Unrestricted 29.32 Metagenome 3300022700 *Microbiome Permanent Draft Carpinteria Salt Marsh Metagenomes 2014 to 2017 Sediment microbial communities from hypersaline pond in Carpinteria, CA, United States - Fall T University of California, Irvine 3300022700 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Aquatic Intertidal zone Marine Sediment Sediment 34.401 -119.534 322756068 345904 103 4 100 3 0.0 Metagenome 7000000326 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763435843 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000326 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 78184132 144731 0 0 0 0 0.0 Metagenome 3300031929 *Microbiome Permanent Draft Microbial communities from the deep biosphere Deep subsurface sediment microbial communities from Tonga Trench, Pacific Ocean - 36_48 re-assembly Marine Biological Laboratory 3300031929 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Sediment Geologic Unclassified Deep subsurface sediment -16.64175 -172.200017 3528698 10595 12 12 15 20 SRX2056174, SRX2056173 0.0 Metagenome 3300007339 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763820215 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007339 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 110841979 153623 83 0 104 0 0.0 Metagenome 3300026268 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV253 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026268 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 415616562 848323 312 2 462 12 SRX2782445 Unrestricted 0.0 Metagenome 3300027513 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027513 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9223 -106.9517 281767494 624587 280 12 508 19 SRX2754307 Unrestricted 0.0 Metagenome 3300047371 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_161012.NP1 DOE Joint Genome Institute (JGI) 3300047371 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 731856450 1518296 528 77 844 124 Unrestricted 10.73 Metagenome 3300044555 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TS16 DOE Joint Genome Institute (JGI) 3300044555 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.4139 96389188 131116 112 7 128 10 SRX12658692 Unrestricted 173.7 Metagenome 3300015175 *Microbiome Permanent Draft Human fecal microbial communities from infant diaper, Dhaka, Bangladesh Human fecal microbial communities from infant diaper, Dhaka, Bangladesh - DMDT001J Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300015175 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes dhtaft@ucdavis.edu Diana Taft No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant feces 23.8103 90.4125 17073818 26035 17 1 26 1 0.0 Metagenome 3300042239 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D263_1 DOE Joint Genome Institute (JGI) 3300042239 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 185002374 271706 148 9 204 13 Unrestricted 70.93 Metagenome 3300006982 *Microbiome Permanent Draft Non-marine hypersaline water viral communities from Salinas de Anana, Spain Non-marine hypersaline water viral communities from A?ana, Logro?o, Spain -Vir_A?ana_Surgencia_PRE University of Alicante 3300006982 Metagenome Analysis IDBA 1.1.1 PRE correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified hypersaline water 42.80111387 -2.985507 21443807 58798 3 0 6 1 0.0 Metagenome 3300038463 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 1-5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300038463 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 1187193132 2173192 418 44 647 76 SRX8138099, SRX8138098 Unrestricted 0.0 Metagenome 3300003481 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_500_biof DOE Joint Genome Institute (JGI) 3300003481 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 175822778 309953 125 2 189 7 SRX2866426, SRX2866425 Unrestricted 0.0 Metagenome 3300026215 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026215 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Soil 68.6137 -149.3144 232730291 610205 160 19 282 26 SRX2739151 Unrestricted 0.0 Metagenome 3300001151 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 DOE Joint Genome Institute (JGI) 3300001151 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 65938277 171061 109 35 195 77 SRX3312025 Unrestricted 0.0 Metagenome 3300043575 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains ecozone, Canada - Lake 08-166 Genome Quebec 3300043575 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.1779 -78.179116 1118353935 2741401 497 110 824 217 0.0 Metagenome 3300003998 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2 DOE Joint Genome Institute (JGI) 3300003998 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov, sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe, Susannah Tringe; Jinglie Zhou No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.05246563 -121.76914021 796160344 2402469 834 8 1880 14 SRX7142754 Unrestricted 0.0 Metagenome 3300030043 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1 DOE Joint Genome Institute (JGI) 3300030043 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 788302655 1613234 502 150 776 241 SRX5357827 Unrestricted 9.06 Metagenome 3300041855 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_290 MetaG AgResearch, New Zealand, Mosgeil 3300041855 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1549383099 3238959 290 19 1076 41 0.0 Metagenome 3300023105 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG (version 2) DOE Joint Genome Institute (JGI) 3300023105 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 998982017 1998403 386 50 576 85 SRX4071900 Unrestricted 27.0 Metagenome 3300007738 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 809635352 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007738 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 3174604 3370 4 1 4 2 0.0 Metagenome 3300056356 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_170419.NP2 DOE Joint Genome Institute (JGI) 3300056356 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 483591865 905592 263 34 399 49 Restricted 25.39 Metagenome 3300042725 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - S_c24.3 Re-assembly Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042725 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1247 -89.1411 67624987 65470 4 3 8 4 SRX5234780 0.0 Metagenome 3300021968 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - L3c1 DOE Joint Genome Institute (JGI) 3300021968 Metagenome Analysis spades v. 3.11.1-check Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9134 -106.8956 102945026 242849 169 29 406 44 SRX3944039, SRX3944038 Unrestricted 0.0 Metagenome 3300013257 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100771 University of Pennsylvania 3300013257 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8941832 16169 8 3 10 5 SRX756081 0.0 Metagenome 3300049810 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_140611.NP2 DOE Joint Genome Institute (JGI) 3300049810 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 908453236 1889530 502 144 742 223 Unrestricted 0.0 Metagenome 3300027199 *Microbiome Permanent Draft Rhizosphere and bulk soil microbial communities from Harvard Forest, USA Rhizosphere microbial communities from Harvard Forest, USA - 5Rhizosphere_NRneg metaG (SPAdes) DOE Joint Genome Institute (JGI) 3300027199 Metagenome Analysis spades v. 3.11.1 Yes Yes deangelis@microbio.umass.edu Kristen M. DeAngelis PhD No Host-associated Plants Rhizosphere Roots Soil rhizosphere 42.5502 -72.1737 540595 1761 3 0 5 1 SRX2718159 Unrestricted 0.0 Metagenome 7000000190 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160380657 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000190 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 45958652 91803 0 0 0 0 0.0 Metagenome 3300056648 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.20W.16 SIP fraction DOE Joint Genome Institute (JGI) 3300056648 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 124708634 204620 68 14 112 24 Unrestricted 12.01 Metagenome 3300021915 *Microbiome Permanent Draft Marine eukaryotic communities from various locations to study complex ecological interactions Marine eukaryotic communities from Monterey Bay, California, United States - M1_20Mar14CPVII9sort6BwellC16 DOE Joint Genome Institute (JGI) 3300021915 Metagenome Analysis spades v. 3.11.1-check Yes Yes azworden@mbari.org; twoyke@lbl.gov Alexandra Worden; Tanja Woyke No Environmental Aquatic Unclassified Marine Unclassified seawater 36.746 -122.0257 65346083 67879 2 1 1 1 SRX7297898 Unrestricted 215.74 Metagenome 3300015083 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G1C, Ice margin) University of Bristol 3300015083 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.15656 -50.018284 6.2 115011779 246632 100 0 173 0 0.0 Metagenome 3300001282 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion v4 (version 4) DOE Joint Genome Institute (JGI) 3300001282 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 402979547 839453 349 122 645 170 Unrestricted 0.0 Metagenome 3300021048 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_4mM DOE Joint Genome Institute (JGI) 3300021048 Metagenome Analysis spades v. 3.10.1 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 100992784 101704 17 1 37 2 SRX4010642 Unrestricted 54.42 Metagenome 3300043396 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Athens, Georgia, United States - middleoconee_2019_sw_WHONDRS-S19S_0011 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043396 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 33.9556 -83.4376 127632356 241510 174 18 300 39 Unrestricted 32.63 Metagenome 3300009992 *Microbiome Permanent Draft Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_108 metaG DOE Joint Genome Institute (JGI) 3300009992 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes esinger@lbl.gov; twoyke@lbl.gov Esther Singer; Tanja Woyke No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass associated 30.387 -97.7301 66051645 120563 17 61 22 110 SRX3203277 Unrestricted 0.0 Metagenome 3300029950 *Microbiome Permanent Draft North Pond 2012 Aquifer microbial communities from Mid-Atlantic Ridge, Atlantic Ocean - 1382A kmer 100 The Marine Biological Laboratory 3300029950 Metagenome Analysis IDBA-UD v. 1.1.2 released by JGI data releasing policy No Yes tully.bj@gmail.com; lmseyler@gmail.com Benjamin Tully; Lauren Seyler Yes 26935537 Environmental Aquatic Aquifer Marine Formation fluid marine subseafloor aquifer 22.78 -46.09 62111438 82550 105 39 142 52 0.0 Metagenome 3300014277 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 238_L1_2014-7-25 San Diego State University 3300014277 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 6382263 17328 13 8 45 15 0.0 Metagenome 3300011964 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00230 Weill Cornell Medical College 3300011964 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.87 -73.9 60226055 92207 15 0 40 0 SRX822209 0.0 Metagenome 3300050471 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - E7NW8 DOE Joint Genome Institute (JGI) 3300050471 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 172384940 302394 200 35 330 53 Unrestricted 16.27 Metagenome 3300047620 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_2_F DOE Joint Genome Institute (JGI) 3300047620 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 144908055 171276 91 2 96 3 Restricted 0.0 Metagenome 3300012116 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #290 DOE Joint Genome Institute (JGI) 3300012116 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 88575811 177130 100 1 172 2 SRX3241780 Unrestricted 0.0 Metagenome 3300003366 *Microbiome Permanent Draft Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland, that are autotrophic Deep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/23 DOE Joint Genome Institute (JGI) 3300003366 Metagenome Analysis Yes Yes rizlan.bernier-latmani@epfl.ch Rizlan Bernier-Latmani Yes 27739431 Environmental Aquatic Groundwater Deep subsurface Porewater Deep subsurface 47.379 7.1648 410552336 700223 440 6 706 10 SRX957931, SRX957930 0.0 Metagenome 3300050549 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf microbial communities from Olympic Peninsula, Washington, USA - D0_SEK2_1 DOE Joint Genome Institute (JGI) 3300050549 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Alder tree leaf 48.165 -124.245 173087945 224262 14 24 35 33 Unrestricted 64.28 Metagenome 3300005423 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV47 DOE Joint Genome Institute (JGI) 3300005423 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 667679034 1607473 710 13 1169 19 SRX2781819 Unrestricted 0.0 Metagenome 3300002243 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2 DOE Joint Genome Institute (JGI) 3300002243 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 742520532 1843038 999 3 1707 8 SRX1991814 Unrestricted 0.0 Metagenome 7000000734 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159753524 replicate 1 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000734 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 12460988 23577 0 0 0 0 0.0 Metagenome 3300070566 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_043-O-20180806-COMP-DNA1 Battelle Memorial Institute 3300070566 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 68.665514 -149.375519 4.57-5.06 1548536 5377 28 2 43 3 0.0 Metagenome 3300069538 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Taiga, AK, USA - HEAL_010-O-20160802-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069538 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.87569 -149.21334 7874730 24692 55 7 82 11 0.0 Metagenome 3300040354 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_004-O-20170829-COMP-DNA1 Battelle Memorial Institute 3300040354 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 4246211 11994 17 4 29 12 0.0 Metagenome 3300049042 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Ob River, Yamalo-Nenets Autonomous Okrug, Russia - Ob' 2004-4 DOE Joint Genome Institute (JGI) 3300049042 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 66.5166 66.6 355624035 788518 350 53 573 116 Unrestricted 13.64 Metagenome 3300040721 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_055-O-20160719-COMP-DNA1 Battelle Memorial Institute 3300040721 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 374774500 987911 385 27 755 49 0.0 Metagenome 3300021575 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA Downsampled Assembly University of Michigan 3300021575 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7026 -83.2538 8.738 46632180 86827 71 18 109 25 0.0 Metagenome 3300002304 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 17JUL2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002304 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 49818634 118587 95 8 188 26 SRX1989905 Unrestricted 0.0 Metagenome 3300027973 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027973 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh Yes 29921005 Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 48.2311 -71.2508 764797831 1563574 411 59 663 125 SRX2996492 Unrestricted 0.0 Metagenome 3300013021 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in West Virginia, USA - MSEEL Well Study Marcellus 5H_2016_04_06 DOE Joint Genome Institute (JGI) 3300013021 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back deep subsurface 39.6018 -79.9761 64472640 139816 117 1 245 0 SRX3021899 Unrestricted 122.39 Metagenome 3300030707 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2) (version 2) DOE Joint Genome Institute (JGI) 3300030707 Metagenome Analysis spades v. 3.12.0 Yes Yes loy@microbial-ecology.net; Michael.Pester@dsmz.de Alexander Loy; Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.1318 11.881 1008456867 1956804 334 3 474 8 Unrestricted 0.0 Metagenome 3300039159 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Deep Lake Tarn, Antarctica - #1 Australian Centre for Ecogenomics 3300039159 Metagenome Analysis Spades v. 3.13.0 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.55499 78.18643 487402753 1072781 373 65 690 113 0.0 Metagenome 3300021396 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2016_2, permeate Toyama Prefectural University 3300021396 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Sediment marine 37.54164 137.93975 65955218 182475 17 3 44 6 0.0 Metagenome 3300043048 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5SB15 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043048 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 6533003 20880 61 4 92 4 SRX8379443 Unrestricted 21.48 Metagenome 3300000623 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 05NOV2007 epilimnion DOE Joint Genome Institute (JGI) 3300000623 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300000762 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 28JUL2008 hypolimnion DOE Joint Genome Institute (JGI) 3300000762 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300000340 *Microbiome Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Ferrous microbial mat and aquatic microbial communities from Echinus Geyser, Yellowstone National Park, USA - transect B T=78-80 C v1 DOE Joint Genome Institute (JGI) 3300000340 Metagenome Analysis released based on JGI ITS Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Ferrous microbial mat and aquatic 44.7220558 -110.7021057 54418506 100564 41 3 59 0 Unrestricted 0.0 Metagenome 3300035389 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Marine sediment microbial communities from Garden Banks mud volcano, Gulf of Mexico, United States - st louis 2 DOE Joint Genome Institute (JGI) 3300035389 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Mud volcano Marine Sediment sediment 27.5 -92.5 138950356 174681 100 0 137 0 SRX8342985 Unrestricted 108.42 Metagenome 3300069417 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_053-O-20170621-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069417 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 10346221 32058 70 11 95 12 0.0 Metagenome 3300014672 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01219 Weill Cornell Medical College 3300014672 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.87 -73.88 33261815 52948 14 0 25 0 SRX823174 0.0 Metagenome 3300001408 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample F52-2 deep-092012 DOE Joint Genome Institute (JGI) 3300001408 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 163096863 393210 167 26 267 27 SRX1987693 Unrestricted 0.0 Metagenome 3300039005 *Microbiome Permanent Draft Beach sand microbial communities from Municipal Pensacola Beach, Florida Beach sand microbial communities from Municipal Pensacola Beach, Florida - OS-G Georgia Institute of Technology 3300039005 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Sand Soil Unclassified Beach sand 30.3262 -87.1745 42483411 102512 14 1 47 2 SRX696248, SRX697334 0.0 Metagenome 3300029094 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 1_12M Beijing Genomics Institute (BGI) 3300029094 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 70476787 86975 55 0 85 0 ERX490935 0.0 Metagenome 3300026100 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3750_2500 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026100 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic 8.2514 -49.9993 24602321 43407 18 6 20 10 SRX2754262 Unrestricted 0.0 Metagenome 3300039793 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA Corn field soil microbial communities from Boone County, Iowa, USA - CC43-Micro-July2012 Iowa State University 3300039793 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land Corn field soil 42.01375 -93.783837 34596244 118035 102 9 225 20 0.0 Metagenome 3300013652 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100426 University of Pennsylvania 3300013652 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 6149549 18162 23 0 16 0 SRX756572 0.0 Metagenome 3300030071 *Microbiome Permanent Draft Chicken ceca and crop associated microbial communities from Bologna, Italy Chicken ceca associated microbial communities from Bologna, Italy - LSA_XT_70 University of Bologna 3300030071 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Birds Large intestine Digestive system Ceca Chicken ceca associated 44.26 11.28 10140583 23074 21 0 36 0 ERX1806432 0.0 Metagenome 3300032135 *Microbiome Permanent Draft Extreme environments viral communities from various locations Cryopeg brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - CBIA 2018 DOE Joint Genome Institute (JGI) 3300032135 Metagenome Analysis spades v. 3.12.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Coastal Marine Unclassified cryopeg brine 71.2944 -156.7153 246889181 404761 130 1 187 3 SRX5809208 Unrestricted 201.59 Metagenome 3300029770 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012060-26 Beijing Genomics Institute (BGI) 3300029770 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 196788448 250474 154 0 198 0 0.0 Metagenome 3300000275 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM148 Beijing Genomics Institute (BGI), Macrogen 3300000275 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 58254759 69353 186 0 305 0 0.0 Metagenome 3300009921 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S8 University of New South Wales 3300009921 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 54217759 96239 34 1 50 4 0.0 Metagenome 3300041059 *Microbiome Permanent Draft Contaminated soil microbial communities from Humid Pampas, Chascomus Partido, Argentina Contaminated soil microbial communities from Humid Pampas, Chascomus Partido, Argentina - L1_278 Illumina 3300041059 Metagenome Analysis Megahit v. 1.2.10 released by JGI data releasing policy No Yes valeria.imperato@uhasselt.be Valeria Imperato No Environmental Terrestrial Unclassified Soil Agricultural land Contaminated soil -35.5787 -58.0138 40366768 81778 30 2 66 4 0.0 Metagenome 3300038587 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A24_5cm_12M University of Tennessee 3300038587 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 45555859 103628 95 3 185 4 SRX710618 0.0 Metagenome 3300027605 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027605 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 308310036 790551 230 34 461 60 SRX3312024 Unrestricted 0.0 Metagenome 3300038355 *Microbiome Permanent Draft Freshwater sediment microbial communities from Alaska Lake sediment microbial communtites from St. Paul Island, Alaska - PH120-PH185-PH194_719 University of California, Santa Cruz 3300038355 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Sediment Lake sediment 57.18 -170.25 4264413 13665 14 3 28 5 0.0 Metagenome 3300035016 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Pleurocapsa ercegoicii ATA3-5Q-KO4 and co-occurring heterotrophs from soil from Atacama Desert, Chile - 20181204_43 DOE Joint Genome Institute (JGI) 3300035016 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Desert Soil Unclassified Soil -27.7283 -71.0347 117546174 159697 41 1 39 3 SRX8239063 Unrestricted 139.77 Metagenome 3300011660 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01143 Weill Cornell Medical College 3300011660 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.68 -73.9 30360881 47335 12 0 23 0 SRX823098 0.0 Metagenome 3300060853 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Chase Lake Wetlands, North Dakota, USA - WOOD_002-M-20210708-comp-1 DOE Joint Genome Institute (JGI) 3300060853 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 47.136134 -99.232896 1264686392 2142241 409 9 708 13 Unrestricted 17.46 Metagenome 3300036783 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in New South Wales, Australia - Pe_8 DOE Joint Genome Institute (JGI) 3300036783 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil -34.5 150.0 1664770815 2790920 448 56 804 82 SRX8383922 Unrestricted 18.37 Metagenome 3300012507 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610 DOE Joint Genome Institute (JGI) 3300012507 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 158154933 413741 263 37 613 68 SRX3527458 Unrestricted 0.0 Metagenome 3300038569 *Microbiome Permanent Draft Bacterial communities from sewage treatment works near Birtley, UK Wastewater bacterial communities from sewage treatment works near Birtley, UK - 01 4M Northumbria University 3300038569 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes martin.spurr@newcastle.ac.uk Martin Spurr No Engineered WWTP Unclassified Wastewater Unclassified wastewater 54.903212 -1.595078 38171259 74146 145 2 212 4 0.0 Metagenome 3300026084 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_AAIW_ad_876m_LV_B (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026084 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 235760088 519586 262 12 428 21 SRX2779449 Unrestricted 0.0 Metagenome 3300057025 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F1P_40_42 DOE Joint Genome Institute (JGI) 3300057025 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9544076 -81.67361068 1829983953 2669451 682 1 1089 2 Unrestricted 13.11 Metagenome 3300037880 *Microbiome Permanent Draft Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA - DeMMO5 v2 Argonne National Laboratory 3300037880 Metagenome Analysis Megahit v. 1.0.6.1 Release as per PI request (GOLD-1409) SM 8.16.2021 No Yes lmmomper@gmail.com; maggie@northwestern.edu Caitlin Casar; Magdalena Osburn No Environmental Terrestrial Aquifer Deep subsurface Unclassified Terrestrial subsurface fluids 44.350833 -103.765833 8.45 156981017 198268 91 0 137 0 0.0 Metagenome 3300014126 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Venezuela to Iowa, USA - V10 Iowa State University 3300014126 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 4253060 8241 0 3 0 0 SRX1150305 0.0 Metagenome 3300033414 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B DOE Joint Genome Institute (JGI) 3300033414 Metagenome Analysis spades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified soil 41.3776 -82.5117 4272864670 10656615 2744 25 5162 50 SRX6871075 Unrestricted 7.17 Metagenome 3300025727 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI037_S3LV_120m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025727 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 542412103 1045978 323 19 490 41 Unrestricted 0.0 Metagenome 3300021120 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 01JUL2008 epilimnion DOE Joint Genome Institute (JGI) 3300021120 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 63985658 127957 74 17 139 24 Unrestricted 0.0 Metagenome 3300031142 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #353 DOE Joint Genome Institute (JGI) 3300031142 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5596 77.8957 438166716 968218 258 4 401 12 SRX5650213 Unrestricted 22.58 Metagenome 3300001136 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine sediment microbial community from Fremont, CA, USA - Pond A23 Sediment 2 DOE Joint Genome Institute (JGI) 3300001136 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Enviromental 37.474067 -121.973033 176553391 395794 235 14 402 16 SRX3303078 Unrestricted 0.0 Metagenome 3300001669 *Microbiome Permanent Draft Alviniconcha endosymbiont microbial communities from the Eastern Lau Spreading center hydrothermal vents, Pacific Ocean GammaLau_v2 Harvard University 3300001669 Metagenome Analysis released per JGI data release policy No Yes rbeinart@fas.harvard.edu Roxanne Beinart No Host-associated Mollusca Gills Respiratory system Intracellular Alviniconcha endosymbiont -21.99 -176.56833 2122165 2302 1 1 1 2 0.0 Metagenome 7000000410 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 763961826 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000410 Metagenome Analysis No Yes ipagani@lbl.gov Ionna Pagani No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 111496612 158994 0 0 0 0 0.0 Metagenome 3300027419 *Microbiome Permanent Draft Bioremediated contaminated groundwater microbial communities from North Railroad Avenue plume (NRAP), New Mexico Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-23 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027419 Metagenome Analysis spades v. 3.11.1 Yes Yes NNIvanova@lbl.gov; rebecca.reiss@nmt.edu Natalia Ivanova; Rebecca Reiss Yes 27980706 Environmental Aquatic Groundwater Deep subsurface Contaminated Bioremediated contaminated groundwater 35.992 -106.0797 317225822 566246 307 8 518 9 SRX2554386 Unrestricted 0.0 Metagenome 3300023210 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG DOE Joint Genome Institute (JGI) 3300023210 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Inlet Marine Unclassified seawater 48.58 -123.5 1209223754 2978836 993 145 1692 198 SRX4480224 Unrestricted 9.43 Metagenome 3300006428 *Microbiome Permanent Draft Microbial communities of the formation fluids of a supercritical CO2 deposit from Well 3, McElmo Dome, Colorado Microbial communities of the formation fluids of a supercritical CO2 deposit from Well 3, McElmo Dome, Colorado Massachusetts Institute of Technology 3300006428 Metagenome Analysis CLC Genomics Workbench released per submitter's request No Yes boonfei@ualberta.ca BOONFEI TAN No Environmental Terrestrial Unclassified Deep subsurface Unclassified supercritical CO2 deposit 39.7640021 -105.1353074 26625403 30536 13 1 15 0 0.0 Metagenome 3300001923 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from the Tropical South Pacific Ocean - GS038 J. Craig Venter Institute (JCVI) 3300001923 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Oceanic Marine Unclassified Marine -2.5819445 -97.85139 451181 795 0 0 2 0 0.0 Metagenome 3300049769 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C13_B_4_drought DOE Joint Genome Institute (JGI) 3300049769 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 114709176 272158 296 20 579 27 Unrestricted 13.54 Metagenome 3300012462 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100724 University of Pennsylvania 3300012462 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14219903 28155 13 12 29 17 SRX756126 0.0 Metagenome 3300037333 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in the Atlantic and Pacific Ocean Hydrothermal vent microbial communities from East Pacific Rise, Pacific Ocean - CV74 DOE Joint Genome Institute (JGI) 3300037333 Metagenome Analysis metaspades v. 3.13.0 Yes Yes pgirguis@oeb.harvard.edu Peter Girguis No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent 9.8416 -104.2917 257383960 407161 226 9 259 12 SRX9088356 Unrestricted 0.0 Metagenome 2149837007 *Microbiome Permanent Draft Mouse gut microbial communities from the University of California, San Diego, USA (3) MouseMetaGen_Dec15_Ind14_HC10 (RLV) University of California, San Diego 2149837007 Metagenome Analysis SOAP denovo released per JGI data release policy No Yes hchiang@ucsd.edu Hsin-I Chiang No Host-associated Mammals Large intestine Digestive system Cecum Mouse gut 32.42 117.1 270748072 928054 312 13 831 0 0.0 Metagenome 3300006866 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_10_20 DOE Joint Genome Institute (JGI) 3300006866 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 33789609 68183 939 0 1681 0 SRX2924399 Unrestricted 0.0 Metagenome 3300035523 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - MeOH_micrcosm.sand.1000ppm.B DOE Joint Genome Institute (JGI) 3300035523 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sandy soil 49.0 -123.0 578887372 917397 288 0 392 0 SRX8346780 Unrestricted 20.82 Metagenome 3300053757 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FL_02 DOE Joint Genome Institute (JGI) 3300053757 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.407926 -82.180036 116159137 187777 6 2 8 10 Restricted 292.94 Metagenome 3300055480 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.17C.16 SIP fraction DOE Joint Genome Institute (JGI) 3300055480 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 313884815 522475 118 34 205 44 Unrestricted 10.97 Metagenome 3300002841 *Microbiome Permanent Draft Whitefly associated endosymbiont microbial communities from Neve Yaar, Israel Whitefly Bemisia tabaci associated secondary symbiont microbial communities from Neve Yaar, Israel - sample Cardinium_whitefly 3300002841 Metagenome Analysis No Yes itaiopa6@gmail.com Itai Opatovsky No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Whitefly Bemisia tabaci associated 32.708101 35.179264 587378 618 0 0 1 0 0.0 Metagenome 3300012004 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A30_5cm_6M University of Tennessee 3300012004 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 249668449 701105 79 5 192 11 SRX710595 0.0 Metagenome 3300013946 *Microbiome Permanent Draft Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 314 Chalmers University of Technology 3300013946 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 132216812 272800 105 1 220 4 SRX193541 0.0 Metagenome 3300013317 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100579 University of Pennsylvania 3300013317 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4540796 9416 16 7 18 9 SRX756175 0.0 Metagenome 3300002167 *Microbiome Permanent Draft Biogas fermentation microbial communities from biogas plants in Germany Biogas fermentation microbial communities from Germany - Plant 4 DNA2 DOE Joint Genome Institute (JGI) 3300002167 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes asczyrba@techfak.uni-bielefeld.de Alexander Sczyrba Yes 27462367 Engineered Bioreactor Digestate Anaerobic Unclassified Biogas fermentantion 52.0385 8.4956 7.8 319946977 599100 531 16 835 15 SRX1598074 Unrestricted 0.0 Metagenome 3300001203 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY85 J. Craig Venter Institute (JCVI) 3300001203 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 984156678 3775020 150 124 420 210 0.0 Metagenome 3300048119 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_120418.NP2 DOE Joint Genome Institute (JGI) 3300048119 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 430695962 895075 367 47 520 76 Unrestricted 13.61 Metagenome 3300029078 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 180_12M Beijing Genomics Institute (BGI) 3300029078 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 49237362 65668 43 0 59 0 ERX490973 0.0 Metagenome 3300001344 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic Microbial community sample from North Sea - COGITO 998_met_02 DOE Joint Genome Institute (JGI) 3300001344 Metagenome Analysis Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 27054497, 31316134 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Pelagic marine 54.184167 7.9 315784915 611833 311 38 507 87 SRX802982 Unrestricted 0.0 Metagenome 3300014933 *Microbiome Permanent Draft Danish lakes Microbial communities Depth profiles Lake Almind and Hund Freshwater microbial communities from Lake Hund, Silkeborg, Region Midtjylland, Denmark - HUS_14.08.12_3m re-submission with coverage Odense University Hospital 3300014933 Metagenome Analysis MEGAHIT v1.1.1 released by JGI data releasing policy Yes Yes atreusch@biology.sdu.dk Alexander Treusch No Environmental Aquatic Lake Freshwater Unclassified Freshwater 56.04 9.54 5.4 54412129 108175 32 7 44 8 0.0 Metagenome 3300046797 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 soil DOE Joint Genome Institute (JGI) 3300046797 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.587562 -123.193264 6.37 494518994 906252 326 36 587 57 Unrestricted 20.82 Metagenome 3300028783 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_3 DOE Joint Genome Institute (JGI) 3300028783 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 1005394696 1714445 165 12 251 12 SRX5356896 Unrestricted 0.0 Metagenome 3300002189 *Microbiome Permanent Draft Enriched soil microbial communities from the University of Wisconsin-Madison, USA, enriched with a pyrite oxidizing culture Enriched soil microbial communities from the University of Wisconsin-Madison, USA, enriched with a pyrite oxidizing culture - Isolate from a Neutral pH aerobic pyrite oxidizing enrichment 3300002189 Metagenome Analysis released by JGI data releasing policy No Yes Eric Roden; Shaomei He No Environmental Terrestrial Sediment Geologic Pyrite containing Enriched soil 46.547528 -119.521866 6032447 6441 1 0 1 0 0.0 Metagenome 3300048593 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME08Jul2004-rr0897 DOE Joint Genome Institute (JGI) 3300048593 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 736844517 1135401 303 49 377 87 Unrestricted 0.0 Metagenome 3300053106 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 endosphere DOE Joint Genome Institute (JGI) 3300053106 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121307 -123.269236 491892226 708483 89 136 130 168 Unrestricted 15.64 Metagenome 3300026355 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A DOE Joint Genome Institute (JGI) 3300026355 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 142699881 362003 179 13 325 29 SRX4801695 Unrestricted 10.63 Metagenome 3300004090 *Microbiome Permanent Draft Eurytemora affinis associated microbial communities from Braddock Bay, NY (Lake Ontario) Eurytemora affinis associated microbial communities from Braddock Bay, NY (Lake Ontario) University of Maryland School of Medicine 3300004090 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes bontrager2@wisc.edu Martin Bontrager No Host-associated Arthropoda: Crustaceans Unclassified Whole body Unclassified Eurytemora affinis associated 43.30746 -77.707341 145209110 263612 8 13 11 15 0.0 Metagenome 3300024052 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_5 DOE Joint Genome Institute (JGI) 3300024052 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Inlet Marine Unclassified seawater 50.0528611 -123.8211389 576588682 1682408 466 36 852 68 SRX4097009 Unrestricted 7.95 Metagenome 3300000897 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 DOE Joint Genome Institute (JGI) 3300000897 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 9953084 31710 148 23 284 36 SRX1985852, SRX2021670, SRX1985853 Unrestricted 0.0 Metagenome 3300042145 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 DOE Joint Genome Institute (JGI) 3300042145 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.9457 -103.6985 234989742 583723 327 29 568 48 Unrestricted 8.74 Metagenome 3300003321 *Microbiome Permanent Draft Sugarcane root and bulk soil microbial communities from Ayr, Burdekin, Queensland Australia Sugarcane bulk soil Sample H1 3300003321 Metagenome Analysis CLC genomics workbench 7 released by JGI data releasing policy No Yes yun.yeoh@uqconnect.edu.au Yun Kit Yeoh No Environmental Terrestrial Unclassified Soil Agricultural land Sugarcane root and bulk soil -19.733298 147.17873 773380834 1108868 59 28 87 41 0.0 Metagenome 3300049787 *Microbiome Permanent Draft Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama - S052_CH8_drought DOE Joint Genome Institute (JGI) 3300049787 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes njbouskill@lbl.gov Nicholas Bouskill No Environmental Terrestrial Tropical forest Soil Bulk soil Soil 9.17936 -79.8296 370988946 967167 272 8 555 16 Unrestricted 7.13 Metagenome 3300005335 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG DOE Joint Genome Institute (JGI) 3300005335 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 3590984928 9808968 2673 265 4647 477 SRX2837472 Unrestricted 0.0 Metagenome 3300012180 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Georgia, USA - TSGA058 MetaG DOE Joint Genome Institute (JGI) 3300012180 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 33.0837 -81.7708 292281355 622890 225 47 399 82 SRX3539654 Unrestricted 0.0 Metagenome 3300040766 *Microbiome Finished Marine bacterial communities from Black Sea, Georgia Marine viral communities from Black Sea, Gonio, Georgia - BS29 NCDC Lugar Center, Georgia 3300040766 Metagenome Analysis Denovo v. 3.2 released by JGI data releasing policy No Yes iakusradze@pha.ge Ia Kusradze No Environmental Aquatic Unclassified Marine Unclassified Marine 41.5605 41.5711 30731361 38442 11 0 13 0 0.0 Metagenome 3300042538 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Spirirestis raphaelensis WJT71-NPBG6 and co-occurring heterotrophs from granitic soil from Pinto Wells, Joshua Tree National Park, Colorado Desert, CA, United States - 20190625_52 DOE Joint Genome Institute (JGI) 3300042538 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Unclassified Soil Unclassified Granitic soil 33.9755 -115.3947 40529993 50287 19 0 23 0 SRX9674662 Unrestricted 224.04 Metagenome 3300006903 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Bulk soil microbial communities from a Populus tree surrounding site in Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5 DOE Joint Genome Institute (JGI) 3300006903 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Environmental Terrestrial Tree plantation Soil Unclassified Bulk soil 35.8444 -83.9599 3779319491 11039885 2268 65 3912 108 SRX2843300 Unrestricted 0.0 Metagenome 3300014099 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Indonesia to Iowa, USA - IO9 Iowa State University 3300014099 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 2303377 4219 0 3 0 1 SRX1150296 0.0 Metagenome 3300007525 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human subgingival plaque microbial communities from NIH, USA - visit 2, subject 763577454 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007525 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human 39.0042816 -77.1012173 96090270 165661 79 0 139 0 0.0 Metagenome 3300022476 *Microbiome Permanent Draft Human saliva microbial communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva microbial communities from oral cavities of IgA immunodeficiency people from Alicante, Spain - individual 1 Autonomous University of Barcelona 3300022476 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.38 -0.51 4304770 5960 7 0 12 0 0.0 Metagenome 3300071019 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_044-M-20200713-COMP-DNA1 3300071019 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 47354338 139730 172 4 325 10 0.0 Metagenome 3300023072 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S151-409C-6 DOE Joint Genome Institute (JGI) 3300023072 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 247546454 661199 464 18 845 32 SRX4801444 Unrestricted 7.49 Metagenome 3300004774 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA5M DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300004774 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu, tmcmahon@engr.wisc.edu; shaomei.he@gmail.com Katherine McMahon, Katherine McMahon; Shaomei He No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 589921865 1527304 662 16 1088 34 SRX2518385 Unrestricted 0.0 Metagenome 3300070521 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Soaproot Saddle, California, USA - SOAP_045-M-20180530-COMP-DNA1 Battelle Memorial Institute 3300070521 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 37.033029 -119.257548 5.37-6.46 8820273 28878 95 15 195 23 0.0 Metagenome 3300009803 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S3_40_50 DOE Joint Genome Institute (JGI) 3300009803 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228508 -119.2716818 123895453 291952 164 6 356 5 SRX2523176 Unrestricted 0.0 Metagenome 3300031508 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_me2 DOE Joint Genome Institute (JGI) 3300031508 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 296612952 607207 213 0 282 0 SRX5650812 Unrestricted 151.97 Metagenome 3300065660 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 828b in Grassy Lake, Alberta, Canada - S00JY_0513 Microbiome Insights 3300065660 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.425784 -111.460018 44552259 67107 24 0 39 0 0.0 Metagenome 3300006675 *Microbiome Permanent Draft Zoanthid-associated microbial communities from different locations Microbial communities of Palythoa variabilis from marine subtidal rocky reef in Praia da Pedra Rachada, Paracuru, CE, Brazil UNIVERSIDADE DE SAO PAULO 3300006675 Metagenome Analysis MIRA released per JGI data release policy No Yes atrindadesilva@gmail.com Amaro Silva No Host-associated Invertebrates Unclassified Cnidaria Unclassified marine subtidal rocky reef -3.398594 -39.014155 28662546 112648 6 30 9 53 0.0 Metagenome 3300014847 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS866 IDBA reassembly (rename) Marine Biological Laboratory 3300014847 Metagenome Analysis IDBA_UD released by JGI data releasing policy No Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow hydrothermal vent diffuse flow 18.37 -81.798 55544988 78826 46 1 60 0 0.0 Metagenome 3300005908 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 3 Metagenome VIRRA3 DOE Joint Genome Institute (JGI) 3300005908 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli, Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.8244 77.8344 10306466 29432 10 0 25 0 SRX2747261 Unrestricted 0.0 Metagenome 3300014161 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin10_30_metaG DOE Joint Genome Institute (JGI) 3300014161 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1349297074 2354514 670 9 987 9 SRX3293039 Unrestricted 9.11 Metagenome 3300000969 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY82 J. Craig Venter Institute (JCVI) 3300000969 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 621148518 2100957 109 50 284 103 0.0 Metagenome 3300049315 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA30 DOE Joint Genome Institute (JGI) 3300049315 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 504904593 1344832 535 4 946 4 Unrestricted 7.2 Metagenome 3300024297 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 71D DOE Joint Genome Institute (JGI) 3300024297 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 332908194 771587 210 25 318 33 SRX4472914 Unrestricted 18.2 Metagenome 3300010040 *Microbiome Permanent Draft Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55 DOE Joint Genome Institute (JGI) 3300010040 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes klgravuer@ucdavis.edu Kelly Gravuer No Environmental Terrestrial Grasslands Soil Unclassified Serpentine soil 38.8708 -122.4274 1967641509 4368777 1558 14 2833 39 SRX2525419 Unrestricted 0.0 Metagenome 7000000486 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 763982056 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000486 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 136355696 215772 0 0 0 0 0.0 Metagenome 3300040085 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_043-M-20160720-COMP-DNA1 Battelle Memorial Institute 3300040085 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 12990118 39810 60 2 126 1 0.0 Metagenome 3300037816 *Microbiome Permanent Draft Bacterial communities from sewage treatment works near Birtley, UK Bioelectrochemical system biofilm bacterial communities from sewage treatment works near Birtley, UK - 12 Northumbria University 3300037816 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes martin.spurr@newcastle.ac.uk Martin Spurr No Engineered Bioreactor Unclassified Anaerobic Unclassified wastewater 54.903212 -1.595078 14771280 32148 68 0 128 0 0.0 Metagenome 3300049368 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC36 DOE Joint Genome Institute (JGI) 3300049368 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 177902291 449258 416 18 889 24 Unrestricted 16.04 Metagenome 3300035080 *Microbiome Permanent Draft Endophytic bacterial communities from mature rice plant in Manipur, India Endophytic bacterial communities from mature rice plant in Manipur, India - S1 Eurofins Genomics India Pvt Ltd. 3300035080 Metagenome Analysis CLC v. 9.5.2 released by JGI data releasing policy No Yes malusingha7@gmail.com Malabika Singha No Host-associated Plants Unclassified Tissue Unclassified Plant tissue 24.44 93.58 351836743 562619 58 21 118 45 0.0 Metagenome 3300005228 *Microbiome Permanent Draft Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich - 46I-100 University of Cincinnati 3300005228 Metagenome Analysis Velvet v. 0.7.57 released per JGI data release policy No Yes rlamendella@lbl.gov Regina Lamendella No Environmental Aquatic Groundwater Freshwater Contaminated Groundwater 40.0 -74.5 0 0 0 0 0 0 0.0 Metagenome 3300020503 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 03MAY2011 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020503 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 99388245 182326 66 49 127 77 SRX1989295 Unrestricted 0.0 Metagenome 3300008487 *Microbiome Permanent Draft Wastewater microbial communities from the hospital sewers Wastewater microbial communities from the hospital sewers in Singapore - Hospital 4 Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300008487 Metagenome Analysis CLC genomics workbench 8 released per JGI data release policy No Yes erinscm@nus.edu.sg Charmaine Ng No Engineered Wastewater Unclassified Unclassified Unclassified wastewater 1.3 103.8 187818199 415717 150 3 315 8 0.0 Metagenome 3300011547 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01080 Weill Cornell Medical College 3300011547 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.97 21802096 33943 12 0 25 0 SRX823035 0.0 Metagenome 3300040173 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_001-M-20160809-COMP-DNA1 Battelle Memorial Institute 3300040173 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 8318166 24130 20 3 54 7 0.0 Metagenome 3300003514 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS821_Marshmallow_DNA 3300003514 Metagenome Analysis CLC released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.934 -130.013428 75613494 163260 60 13 115 26 0.0 Metagenome 2077657018 *Microbiome Permanent Draft Marine sediment archaeal communities from Santa Barbara Basin, CA, that are anaerobic and methane-oxidizing Marine sediment archaeal communities from Santa Barbara Basin, CA, that are methane-oxidizing, sample 0-3 cm DOE Joint Genome Institute (JGI) 2077657018 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Sediment Marine sediment 34.21 -119.5 202177532 556613 0 0 0 0 Unrestricted 0.0 Metagenome 3300008469 *Microbiome Permanent Draft Marine sediment microbial communities from shallow-sea hydrothermal vent, Milos, Greece Marine sediment microbial communities from shallow-sea hydrothermal vent, Milos, Greece - WM1 National Aeronautics and Space Administration (NASA) 3300008469 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes janamend@usc.edu Jan Amend No Environmental Aquatic Hydrothermal vents Marine Sediment Marine sediment 36.674869 24.520916 4-7 722966813 1614206 658 20 1016 33 0.0 Metagenome 3300045306 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-481 Genome Quebec 3300045306 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 53.598731 -124.889241 949871861 2225056 346 63 593 113 0.0 Metagenome 3300013785 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS874 IDBA reassembly Marine Biological Laboratory 3300013785 Metagenome Analysis reassembly with IDBA-UD released by JGI data releasing policy No Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow diffuse flow hydrothermal vent 18.376 -81.797 17930225 20689 11 0 9 0 0.0 Metagenome 3300043740 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - FDOC_A75 DOE Joint Genome Institute (JGI) 3300043740 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.1424 -62.8818 634886496 1826279 490 7 929 13 Unrestricted 7.9 Metagenome 3300043362 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 246-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043362 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9603 -107.0295 291124555 895313 420 20 727 45 Unrestricted 5.96 Metagenome 3300060460 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210612_16_09 DOE Joint Genome Institute (JGI) 3300060460 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 341443405 480623 179 113 238 142 Unrestricted 35.8 Metagenome 3300032102 *Microbiome Permanent Draft Microbial communities from the deep biosphere Alkaline spring water microbial communities from Santa Elena Complex in Costa Rica - Mur_UP re-assembly The Marine Biological Laboratory 3300032102 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Alkaline Non-marine Saline and Alkaline Unclassified water 10.8939 -85.7273 434468222 1418681 518 120 1103 253 SRX2065074 0.0 Metagenome 3300027632 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Olavius algarvensis symbiont microbial communities from Tuscany, Italy - Type A ELBA extract 3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027632 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 42.8072 10.1411 807558100 869004 8 4 15 4 SRX3322759 Unrestricted 0.0 Metagenome 3300036528 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 E1 1-5 DOE Joint Genome Institute (JGI) 3300036528 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.047 188550606 522005 322 6 538 11 SRX8142651 Unrestricted 5.27 Metagenome 3300025195 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0261 (SPAdes) DOE Joint Genome Institute (JGI) 3300025195 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -3.03 -27.33 51672713 101186 55 20 91 29 SRX1983334 Unrestricted 0.0 Metagenome 3300035104 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B5.3_Sample5.Rodeo3.Well662 DOE Joint Genome Institute (JGI) 3300035104 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 47577583 72710 43 0 71 0 SRX8354321 Unrestricted 193.38 Metagenome 3300034100 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B4A4.2 DOE Joint Genome Institute (JGI) 3300034100 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 480978049 1239770 655 0 1147 0 SRX7658951 Unrestricted 7.2 Metagenome 3300041893 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_34 MetaG AgResearch, New Zealand, Mosgeil 3300041893 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1222707633 2357926 277 22 903 35 0.0 Metagenome 3300029302 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Indian Ocean - SRB3 Michigan State University 3300029302 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 3.715 105.408333 86254795 257579 5 0 8 2 0.0 Metagenome 3300012481 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.1.yng.040610 DOE Joint Genome Institute (JGI) 3300012481 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 80794822 215052 183 20 379 46 SRX3527356 Unrestricted 0.0 Metagenome 3300012998 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM3 DOE Joint Genome Institute (JGI) 3300012998 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Fungi Unclassified Mycelium Unclassified fungus garden -21.166 -47.848 543363875 729969 197 1272 311 2512 SRX7699241 Unrestricted 57.27 Metagenome 3300018933 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 42 hrs v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018933 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 458594707 898400 350 21 612 27 0.0 Metagenome 3300047439 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 soil DOE Joint Genome Institute (JGI) 3300047439 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Botanical garden Soil Bulk soil Soil 44.5879 -123.1929 202061789 372394 180 10 328 14 Unrestricted 21.78 Metagenome 3300029423 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 044_10_30_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029423 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 198839201 257222 243 0 347 0 0.0 Metagenome 3300034084 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B1A4.1 DOE Joint Genome Institute (JGI) 3300034084 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 376177621 944810 495 1 902 0 SRX7658934 Unrestricted 8.41 Metagenome 3300028052 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_15MAY2017_LD1 DOE Joint Genome Institute (JGI) 3300028052 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 43150399 84279 6 23 17 22 SRX5345646 Unrestricted 48.77 Metagenome 3300008090 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160643649 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008090 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 134881877 190553 73 0 127 0 0.0 Metagenome 3300035497 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - Beaver1Cecum1 DOE Joint Genome Institute (JGI) 3300035497 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.18 -122.54 619088043 1153055 1020 13 1627 16 SRX8344186 Unrestricted 11.44 Metagenome 3300036666 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Soil microbial communities from Mojave Desert, California, United States - 4NOC DOE Joint Genome Institute (JGI) 3300036666 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Desert Soil Unclassified soil 34.7856 -115.66 157981233 454363 449 20 858 33 SRX8199727 Unrestricted 8.62 Metagenome 3300038401 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Sediment microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_South_1 DOE Joint Genome Institute (JGI) 3300038401 Metagenome Analysis metaspades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Wetlands Marine Sediment sediment 26.3584 -80.2982 571280675 1017638 454 21 863 33 SRX9404782 Unrestricted 14.66 Metagenome 3300007878 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 159713063 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007878 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 14013002 19270 15 0 25 4 SRX024603, SRX024604, SRX025515, SRX025513 0.0 Metagenome 3300002257 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP02-MB 3300002257 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300005770 *Microbiome Permanent Draft Human lung microbial communities from healthy (non-smokers and smokers) and HIV infected subjects Human lung microbial communities from HIV infected subject HIV7-1 New York University Langone Medical Center 3300005770 Metagenome Analysis Shotgun released per JGI data release policy No Yes leopoldo.segal@nyumc.org Leopoldo N Segal No Host-associated Mammals: Human Lung Respiratory system Unclassified Lung Microbiome 40.7127 -74.0059 28731191 85115 1 3 1 1 0.0 Metagenome 3300001177 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2 DOE Joint Genome Institute (JGI) 3300001177 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 33060400 104152 149 17 256 34 SRX3312068 Unrestricted 0.0 Metagenome 3300028297 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 18D DOE Joint Genome Institute (JGI) 3300028297 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 317430180 611538 171 28 281 29 SRX5171236 Unrestricted 18.76 Metagenome 3300059724 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1556B-02 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059724 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2022 -123.941 144084952 318296 174 26 299 40 SRX2753740 Unrestricted 0.0 Metagenome 3300025921 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025921 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn rhizosphere 42.3948 -85.3738 3426933321 7633714 1443 124 2702 232 SRX2740404 Unrestricted 0.0 Metagenome 3300014182 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Thailand to Iowa, USA - T10 Iowa State University 3300014182 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 7649237 15317 0 2 0 1 SRX1150297 0.0 Metagenome 3300027846 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027846 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 1342408934 2859519 489 26 902 39 SRX2933535 Unrestricted 0.0 Metagenome 3300066272 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Atlantic Neotropical, PR, USA - GUAN_048-M-20161004-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066272 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 17.96955 -66.8687 38491845 113201 83 4 171 9 0.0 Metagenome 3300025201 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP0900 (SPAdes) DOE Joint Genome Institute (JGI) 3300025201 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -33.55 39.89 75301669 140464 101 9 124 8 SRX1982922 Unrestricted 0.0 Metagenome 3300049293 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MB28 DOE Joint Genome Institute (JGI) 3300049293 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 83739793 222188 351 13 679 16 Unrestricted 16.01 Metagenome 3300005094 *Microbiome Permanent Draft Stylissa massa endosymbiont microbial communities from Guam Ion Torrent S massa Salk Institute 3300005094 Metagenome Analysis CLC Workbench released per JGI data release policy No Yes abrahim.eg@gmail.com Abrahim El Gamal No Host-associated Porifera Unclassified Unclassified Unclassified Marine benthic sponge Stylissa massa associated 13.4388546 144.8224773 162472243 369335 18 1 31 6 0.0 Metagenome 3300047357 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_190424.NP2 DOE Joint Genome Institute (JGI) 3300047357 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 701480741 1390683 337 57 559 93 Unrestricted 17.23 Metagenome 3300011472 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00993 Weill Cornell Medical College 3300011472 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.59 -73.76 21709195 25796 15 0 28 0 SRX822955 0.0 Metagenome 3300012888 *Microbiome Permanent Draft Solar panel surface microbial communities from Lawrence Berkeley National Laboratory, California, USA Solar panel surface microbial communities from Lawrence Berkeley National Laboratory, California, USA - R DOE Joint Genome Institute (JGI) 3300012888 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes trnorthen@lbl.gov Trent Northen No Engineered Built environment Unclassified Solar panel Unclassified solar cell surface 37.876387 -122.246777 590103071 1020575 451 670 554 1237 SRX4808763 Unrestricted 0.0 Metagenome 3300022050 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v3) (version 3) DOE Joint Genome Institute (JGI) 3300022050 Metagenome Analysis spades v. 3.11.1-check Yes Yes chenf@umces.edu; bcampb7@clemson.edu Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.12 -75.25 103419190 288639 13 0 16 0 SRX3786009, SRX2838063, SRX3786010 Unrestricted 0.0 Metagenome 3300002092 *Microbiome Permanent Draft Lentic enriched actinobacterial communities from dystrophic bog Grosse Fuchskuhle, Brandenburg, Germany Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B6 metagenome DOE Joint Genome Institute (JGI) 3300002092 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes sarilog@gmail.com Sarahi Garcia Yes 29848762 Environmental Aquatic Lentic Freshwater Unclassified Lentic 53.152741 13.022518 122725202 258129 28 0 49 1 SRX3323209 Unrestricted 0.0 Metagenome 3300019711 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BLC_4-5_MG DOE Joint Genome Institute (JGI) 3300019711 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 106946985 265111 213 22 368 33 SRX3983361 Unrestricted 3.61 Metagenome 3300049474 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from South Carolina, USA - hugercreek_2019_sed_WHONDRS-S19S_0044 DOE Joint Genome Institute (JGI) 3300049474 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 33.131027 -79.811134 68379742 173368 401 9 802 9 Unrestricted 9.62 Metagenome 3300003496 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_200m_DNA DOE Joint Genome Institute (JGI) 3300003496 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 268667281 527056 269 0 439 0 Unrestricted 0.0 Metagenome 3300007549 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1548B-02 DOE Joint Genome Institute (JGI) 3300007549 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2319 -123.8812 389926997 740790 348 13 530 19 SRX2753718 Unrestricted 0.0 Metagenome 3300027003 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 26 (SPAdes) DOE Joint Genome Institute (JGI) 3300027003 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 90220079 220449 108 0 201 1 SRX4340645 Unrestricted 0.0 Metagenome 3300014251 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 267_D2_2014-10-3 San Diego State University 3300014251 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 3832315 13440 10 6 34 13 0.0 Metagenome 3300038808 *Microbiome Permanent Draft Industrial fuel microbial communities from aircraft samples near Hamburg, Germany Industrial fuel microbial communities from aircraft samples near Hamburg, Germany - 190829_022_002 re-assembly HPI Heinrich-Pette-Institut 3300038808 Metagenome Analysis metaSpades v. 3.1 released by Ines Krohn-Molt No Yes wolfgang.streit@uni-hamburg.de; ines.krohn@uni-hamburg.de Wolfgang Streit; Ines KROHN No Engineered Industrial production Unclassified Engineered product Unclassified Industrial fuel 53.338 9.5152 54692720 62055 7 1 14 1 0.0 Metagenome 3300070475 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_027-M-20190702-COMP-DNA1 Battelle Memorial Institute 3300070475 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 29.691969 -81.992063 5.03-5.68 1182233 4009 19 2 24 2 0.0 Metagenome 3300027795 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027795 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 51.62 -128.09 790387842 1918349 487 147 828 243 SRX2581297 Unrestricted 0.0 Metagenome 3300021466 *Microbiome Permanent Draft Longitudinal study of halite endolithic microbial communities Halite endolithic microbial communities from Salar Grande N, Atacama Desert, Chile - SG1-N-2017-02 Johns Hopkins University 3300021466 Metagenome Analysis metaSPAdes v.3.11.1 released by JGI data releasing policy Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Halite pinnacle -20.930197 -70.013428 790976118 1164211 159 12 276 9 0.0 Metagenome 3300047585 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Soil microbial communities from peatland in Alberta, Canada - SB-NH 20-30 cm DOE Joint Genome Institute (JGI) 3300047585 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4768 -114.8775 1303932537 1887267 232 43 347 71 Unrestricted 0.0 Metagenome 3300037704 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_072517_113_120_jgi DOE Joint Genome Institute (JGI) 3300037704 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2314168504 3541457 862 17 1378 21 SRX9162761 Unrestricted 13.38 Metagenome 3300007616 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_A_H2O_MG DOE Joint Genome Institute (JGI) 3300007616 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Pond water 37.4958 -122.1331 409429768 848539 408 3 690 2 SRX10967259 Unrestricted 0.0 Metagenome 3300017540 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Organic Plus compost microbial communities from Emeryville, California, USA - eDNA 3rd pass 37_C BE-Lig OP (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017540 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes JMGladden@lbl.gov John Gladden No Engineered Solid waste Composting Mixed feedstock Commercial compost compost 37.83 -122.29 519181799 792144 724 12 964 40 SRX4808936, SRX4808937 Unrestricted 0.0 Metagenome 3300069631 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_051-M-20160822-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069631 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 18512783 59569 69 7 123 10 0.0 Metagenome 3300016638 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Site 232 with 3.0UM filter J. Craig Venter Institute 3300016638 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater -68.4 78.18278 8.85 13724083 29238 8 5 10 4 0.0 Metagenome 3300042129 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_070516_95 DOE Joint Genome Institute (JGI) 3300042129 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.1836 -97.9974 101172227 278569 239 18 422 25 Unrestricted 7.37 Metagenome 3300055097 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_27-s27 day 365 DOE Joint Genome Institute (JGI) 3300055097 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1607583089 2399498 412 187 608 195 Unrestricted 36.51 Metagenome 3300013271 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100229 University of Pennsylvania 3300013271 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 29621561 59443 14 5 29 4 SRX756672 0.0 Metagenome 3300043381 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 186-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043381 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.8583 -107.0921 238845390 743880 429 18 785 31 Unrestricted 6.94 Metagenome 3300036875 *Microbiome Permanent Draft Soil microbial communities from a coastal freshwater wetland in North Carolina, United States Soil microbial communities from coastal freshwater wetland in North Carolina, United States - 10PFC DOE Joint Genome Institute (JGI) 3300036875 Metagenome Analysis metaspades v. 3.13.0 Yes Yes peraltaa@ecu.edu Ariane Peralta No Environmental Terrestrial Wetlands Soil Unclassified soil 35.8956 -76.1655 753162443 1278275 281 13 493 14 SRX8387882 Unrestricted 14.87 Metagenome 3300049498 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC28 DOE Joint Genome Institute (JGI) 3300049498 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 31069541 83855 144 5 333 9 Unrestricted 22.24 Metagenome 3300037188 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_08D_18 DOE Joint Genome Institute (JGI) 3300037188 Metagenome Analysis metaspades v. 3.13.0 Yes Yes swr38@rutgers.edu; barkay@aesop.rutgers.edu Spencer W. Roth; Tamar Barkay No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9123 -147.839 577075858 1318191 386 73 710 92 SRX8229344 Unrestricted 6.27 Metagenome 3300049981 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Leaf microbial communities from farm grass in Deerfield, Massachusetts, United States - Orchardgrass_Phyllosphere_Drought1 (v3) (version 3) DOE Joint Genome Institute (JGI) 3300049981 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 42.4788 -72.5788 830194420 1433241 147 159 266 208 Restricted 0.0 Metagenome 2018322000 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of healthy infants and adults Gut Microbiota of 1 Month Old Human Infant DOE Joint Genome Institute (JGI) 2018322000 Metagenome Analysis Released by Nikos bc they were more than 5 years old No Yes francino_pil@gva.es M. Pilar Francino Yes 20333224 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51708794 175857 0 0 0 0 0.0 Metagenome 3300022437 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Lake Baghdad, Rottnest Island (WA - Australia) - LBBRO3 JM21 AGRF 3300022437 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.994794 115.523776 72663947 124880 42 2 67 4 0.0 Metagenome 3300005078 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Hydrocarbon microbial Community from Halfdan Field, North Sea, Denmark - MHBA5 Shell Corporation 3300005078 Metagenome Analysis megahit Released on PI's request No Yes ebalsop@lbl.gov Eric Alsop No Environmental Aquatic Deep subsurface Marine Hydrocarbon Water 55.49 7.42 488703393 1448950 2216 17 3201 41 0.0 Metagenome 3300011713 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00381 Weill Cornell Medical College 3300011713 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.78 -73.98 38078126 50238 27 0 32 0 SRX822352 0.0 Metagenome 3300010325 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG DOE Joint Genome Institute (JGI) 3300010325 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 783278717 1871760 569 25 1121 58 SRX2524975 Unrestricted 0.0 Metagenome 3300066010 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Barrow Environmental Observatory, Tundra, AK, USA - BARR_003-O-20170807-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066010 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 71.28241 -156.61936 6105204 16598 36 0 55 1 0.0 Metagenome 3300047612 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_1_F DOE Joint Genome Institute (JGI) 3300047612 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 142924423 164949 102 1 103 1 Restricted 0.0 Metagenome 3300039269 *Microbiome Permanent Draft Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada - diffuse fluids ECf9 Dalhousie University 3300039269 Metagenome Analysis Megahit v. 1.2.8 released by JGI data releasing policy No Yes smurdock@uvic.ca Sheryl Murdock No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Marine 47.963 -129.0915 563944187 1195480 520 76 779 143 0.0 Metagenome 3300026808 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A1-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300026808 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 25037330 86798 64 0 118 0 SRX1990305, SRX1990306 Unrestricted 0.0 Metagenome 3300005597 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF51B DOE Joint Genome Institute (JGI) 3300005597 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 662220633 1854382 340 237 637 364 SRX2781815 Unrestricted 0.0 Metagenome 3300029335 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 037_10_31_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029335 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 234717045 284641 230 1 322 0 0.0 Metagenome 3300053743 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHL_02 DOE Joint Genome Institute (JGI) 3300053743 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.40849 -82.168434 426909824 617739 16 16 27 18 Restricted 73.01 Metagenome 3300060390 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210613_17_05 DOE Joint Genome Institute (JGI) 3300060390 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 565747855 803486 272 204 364 264 Unrestricted 34.76 Metagenome 3300043492 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime ecozone, Canada - Lake 07-251 Genome Quebec 3300043492 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.170166 -60.014699 724197720 1758458 298 72 524 144 0.0 Metagenome 3300039287 *Microbiome Draft Fumarole sediment bacterial commnuities from geothermic field Los Azufres, Michoacan, Mexico Fumarole sediment bacterial comunities from Maritaro spa, Michoacan Mexico - C Macrogen Inc 3300039287 Metagenome Analysis SPAdes v. 3.8 released by JGI data releasing policy No Yes hhbolivart@unal.edu.co Hermes Hernan Bolivar-Torres No Environmental Terrestrial Fumaroles Volcanic Unclassified Fumarole sediment 19.8221 -100.6681 429287669 613006 269 47 337 67 0.0 Metagenome 3300031997 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0 DOE Joint Genome Institute (JGI) 3300031997 Metagenome Analysis spades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5094 -110.5094 4043615448 8748753 2000 29 3216 49 SRX6380654 Unrestricted 11.06 Metagenome 3300046488 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvCe-C(3) 30-34 DOE Joint Genome Institute (JGI) 3300046488 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0434 693014531 1095419 313 1 516 1 Restricted 13.17 Metagenome 3300031601 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from Ellis Fjord, Antarctic Ocean - #133 DOE Joint Genome Institute (JGI) 3300031601 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5958 78.1913 666375426 1502740 371 3 512 4 SRX5649650 Unrestricted 20.64 Metagenome 3300007984 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_C_D1_MG DOE Joint Genome Institute (JGI) 3300007984 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4971 -122.133 576898851 1079277 665 12 1088 23 SRX10967256 Unrestricted 0.0 Metagenome 3300008501 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 159753524 replicate 2 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008501 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 2336693 2625 1 0 1 0 0.0 Metagenome 3300024528 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_23 DOE Joint Genome Institute (JGI) 3300024528 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Strait Marine Unclassified seawater 49.2166667 -123.5333333 1024822331 2606685 744 63 1344 116 SRX4480255 Unrestricted 9.58 Metagenome 3300012670 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT293_2 DOE Joint Genome Institute (JGI) 3300012670 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9228 -106.9508 56682514 134268 191 14 494 28 SRX3368779 Unrestricted 0.0 Metagenome 3300057049 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F1P_18_20 DOE Joint Genome Institute (JGI) 3300057049 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9544076 -81.67361068 2273861628 3450615 845 1 1416 4 Unrestricted 12.61 Metagenome 3300028875 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143 DOE Joint Genome Institute (JGI) 3300028875 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92045766 -106.94845279 953846722 2307102 453 13 790 27 SRX5354684 Unrestricted 12.15 Metagenome 3300051198 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water microbial communities from Sandhills, Nebraska, United States - NSL_Border_2020_MMG DOE Joint Genome Institute (JGI) 3300051198 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.79185 -102.53404 1578978339 2523089 515 11 736 9 Unrestricted 44.2 Metagenome 3300006185 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_1000_biof - 1398105538229 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300006185 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 349226748 673307 196 100 310 87 SRX2867382, SRX2867383 Unrestricted 0.0 Metagenome 3300022359 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL2BM3 JM30 AGRF 3300022359 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.006972 115.520541 35768432 69848 26 2 42 4 0.0 Metagenome 3300017689 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_07NOV2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017689 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 194628045 389346 182 133 289 207 SRX3927728 Unrestricted 6.92 Metagenome 3300021421 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet from Santa Barbara Zoo, California, United States - Bagasse, gen10, Rep 2, Chloramphenicol DOE Joint Genome Institute (JGI) 3300021421 Metagenome Analysis metaSPAdes released by JGI data releasing policy No Yes xpeng@seoe.sc.edu Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 210956308 321808 61 52 112 92 0.0 Metagenome 3300011553 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00222 Weill Cornell Medical College 3300011553 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.87 -73.9 17351259 34782 10 0 27 0 SRX822201 0.0 Metagenome 3300022565 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 12 Selected contigs with viral hallmark genes Autonomous University of Barcelona 3300022565 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 1098202 1714 0 0 0 0 0.0 Metagenome 3300000781 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion v3 (version 3) DOE Joint Genome Institute (JGI) 3300000781 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.0412 -89.6864 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300029228 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021313-113 Beijing Genomics Institute (BGI) 3300029228 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 148007120 195859 133 0 187 0 0.0 Metagenome 7000000111 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 765620695 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000111 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 138578014 210019 0 0 0 0 0.0 Metagenome 3300070628 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_071-O-20190617-COMP-DNA1 3300070628 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 9670215 31066 83 5 140 13 0.0 Metagenome 3300025803 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025803 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 285753630 663266 118 3 212 5 SRX2853902 Unrestricted 0.0 Metagenome 3300012974 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung F16 Day 16 Metagenome DOE Joint Genome Institute (JGI) 3300012974 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Fecal 38.04 -122.5 889132608 1657704 1061 194 1719 285 SRX3205710 Unrestricted 0.0 Metagenome 3300022518 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 20-24 DOE Joint Genome Institute (JGI) 3300022518 Metagenome Analysis spades v. 3.11.1-check Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0472 105503676 280988 103 6 178 9 SRX4415342, SRX8128069 Unrestricted 0.0 Metagenome 3300042631 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A23 University of California, Davis 3300042631 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 204756046 594124 299 10 565 12 0.0 Metagenome 3300045483 *Microbiome Permanent Draft Florida Reef Tract Coral Disease Outbreak Coral surface microbial communities from Montastraea cavernosa, offshore reef, Ft. Lauderdale, FL, USA - McD1 -2 University of Florida 3300045483 Metagenome Analysis MEGAHIT v. 1.1.4 released per PI No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified coral surface 26.16 -80.1 509142634 716196 71 7 64 12 0.0 Metagenome 2166559002 *Microbiome Permanent Draft Marine microbial communities from a deep-sea hydrothermal vent at Loihi Seamount, Hawaii Marine microbial communities from hydrothermal vents at Loihi seamountain, Hawaii Pennsylvania State University 2166559002 Metagenome Analysis released per JGI data release policy No Yes esthersi@usc.edu Esther Singer Yes 23518919 Environmental Aquatic Hydrothermal vents Marine Unclassified Marine 18.47 -155.18 8 5271679 7061 2 0 4 0 0.0 Metagenome 3300010238 *Microbiome Permanent Draft Terrestrial oil reservoir microbial communities from Alaska Terrestrial oil reservoir microbial community from Ivishak Formation, Alaska - I1 Yale Center for Genome Analysis 3300010238 Metagenome Analysis idba-ud released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis Yes 26787827 Environmental Terrestrial Unclassified Oil reservoir Unclassified produced fluid 70.4 -148.7 1317898741 6615901 2991 223 11335 1419 0.0 Metagenome 3300027127 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepC_8h DOE Joint Genome Institute (JGI) 3300027127 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 105449386 215232 138 9 182 18 SRX5245178 Unrestricted 14.82 Metagenome 3300025966 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleC_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025966 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.224476 -122.019341 130934278 287272 162 2 267 1 SRX7143104 Unrestricted 0.0 Metagenome 3300021112 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 13JUN2008 epilimnion DOE Joint Genome Institute (JGI) 3300021112 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 24212037 52528 49 15 70 22 Unrestricted 0.0 Metagenome 7000000422 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 823052294 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000422 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 106455055 195661 0 0 0 0 0.0 Metagenome 3300037449 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037449 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0474 574902459 962784 196 7 291 5 SRX4415365, SRX8128067 Unrestricted 0.0 Metagenome 3300007894 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 764083206 replicate 2 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007894 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 2459964 6456 7 0 14 3 SRX024112 0.0 Metagenome 3300014853 *Microbiome Permanent Draft Lettuce associated viral communities from produce distribution center in Michigan, USA Romaine lettuce associated viral communities from produce distribution center in Michigan, USA - FR4 Michigan State University 3300014853 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Romaine lettuce 987381 1994 21 13 58 21 SRX1432942 0.0 Metagenome 3300023222 *Microbiome Permanent Draft Microbial communities of deep seafloor calcareous sediment with volcaniclastic crumbs from southwestern Indian Ocean Marine sediment microbial communities from southwestern Indian Ocean - DY125-40IV-SWIR-S027-TVG16 Third Institute of Oceanography, State Oceanic Administration 3300023222 Metagenome Analysis idba v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Sediment Marine Unclassified sediment -38.78333 47.51667 1976364380 3757391 346 30 730 45 0.0 Metagenome 3300040683 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik, Tundra, AK, USA - TOOL_006-O-20170721-COMP-DNA1 Battelle Memorial Institute 3300040683 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 68.66109 -149.37047 1486973 4971 15 1 25 1 0.0 Metagenome 3300037571 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - SOY_050217 DOE Joint Genome Institute (JGI) 3300037571 Metagenome Analysis metaspades v. 3.13.0 Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.8854 -89.3208 243343502 736452 427 11 845 10 SRX9382429 Unrestricted 5.64 Metagenome 3300034355 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Oct2015-rr0135 DOE Joint Genome Institute (JGI) 3300034355 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1267934383 2473125 683 236 1017 336 SRX7622153 Unrestricted 12.6 Metagenome 7000000244 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159915365 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000244 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 146747746 268038 0 0 0 0 0.0 Metagenome 3300017955 *Microbiome Permanent Draft Coastal wetland sediment microbial communities from the Mid-Atlantic and Southeast Atlantic Coast of USA, responding to salinity intrusion. Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2 DOE Joint Genome Institute (JGI) 3300017955 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Freshwater sediment 35.9061 -76.1569 1698066236 3520190 784 4 1332 6 SRX4367497 Unrestricted 6.05 Metagenome 3300017667 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - G13-11 University of Michigan 3300017667 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.39651 -85.40936 31775620 40342 14 0 24 1 0.0 Metagenome 3300028666 *Microbiome Permanent Draft Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG DOE Joint Genome Institute (JGI) 3300028666 Metagenome Analysis spades v. 3.11.1 Yes Yes rbneum@uw.edu Rebecca Neumann No Host-associated Plants Rhizosphere Roots Soil rhizosphere 47.6516 -122.3045 581164518 1351643 402 1 671 13 SRX5271541 Unrestricted 11.53 Metagenome 3300013873 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In2-11 gowning area SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300013873 Metagenome Analysis SPAdes 3.10.0 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1 -118.1 181198324 274149 42 29 86 37 Unrestricted 0.0 Metagenome 3300025046 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-45 (SPAdes) DOE Joint Genome Institute (JGI) 3300025046 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 50.0454 -144.8791 104258628 269023 18 0 15 0 Unrestricted 0.0 Metagenome 3300028139 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_18SEP2017_LD1 DOE Joint Genome Institute (JGI) 3300028139 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 52730414 105706 32 78 59 118 SRX5345921 Unrestricted 20.53 Metagenome 3300002733 *Microbiome Permanent Draft Coal-bed methane well microbial communities from Surat Basin, Queensland, Australia Coal-bed methane well microbial communities from Surat Basin, Queensland, Australia, Sample - Codie-8 produced water 3300002733 Metagenome Analysis CLC Genomics Workbench v6 (de novo assembler) released by JGI data releasing policy No Yes donovan.parks@gmail.com Donovan Parks No Environmental Terrestrial Unclassified Deep subsurface Unclassified Coal-bed methane well -27.0061 150.3916 222237769 385093 79 4 185 4 0.0 Metagenome 3300006073 *Microbiome Permanent Draft Mining for adhesins from protozoa-associated epibionts Protozoa-associated epibionts from sheep rumen, Palmerston North, New Zealand - no screen Leibniz Institute 3300006073 Metagenome Analysis Unknown released per JGI data release policy No Yes filomena.ng@agresearch.co.nz Filomena Ng No Host-associated Mammals Stomach Digestive system Rumen Rumen -40.355 175.6117 1069277 3562 3 1 4 3 0.0 Metagenome 3300023444 *Microbiome Permanent Draft Hydrothermal Fe-rich Mat Reference Genomes Hydrothermal Fe-rich mat microbial community from Loihi Seamount, Hawaii, USA - 675-SC9 University of Delaware 3300023444 Metagenome Analysis metaSPAdes v. 3.10.0 Metagenomes associated with bioRxiv doi:10.1101/722066 Yes Yes mcallis@uw.edu Sean McAllister No Environmental Aquatic Hydrothermal vents Marine Microbial mats Hydrothermal Fe-rich mat 18.906379 -155.256927 582536762 850440 299 0 376 0 0.0 Metagenome 7000000303 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000303 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2739880 4196 0 0 0 0 0.0 Metagenome 3300031887 *Microbiome Permanent Draft Testing DNA extraction from Arctic samples project reference metagenomes Permafrost active layer microbial community from Axel Heiberg Island, Nunavut, Canada - polygon interior 5cm, replicate 3 MoBio Control McGill University 3300031887 Metagenome Analysis Canu v. 1.7.1 released by JGI data releasing policy No Yes isabelle.raymond-bouchard@mail.mcgill.ca Isabelle Raymond-Bouchard No Environmental Terrestrial Unclassified Soil Permafrost Permafrost active layer 79.416111 -90.758333 52549253 71695 23 1 38 1 0.0 Metagenome 3300048776 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 S2 30-34 DOE Joint Genome Institute (JGI) 3300048776 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3532 19.0475 318873646 419998 76 1 87 2 Restricted 26.47 Metagenome 3300048931 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Soil microbial communities from Mt Crested Butte, Colorado, USA - LM_C_07192018 DOE Joint Genome Institute (JGI) 3300048931 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.92 -106.95 1984440138 3474652 661 18 1090 37 Unrestricted 17.8 Metagenome 3300000913 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and E2 (3) DOE Joint Genome Institute (JGI) 3300000913 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 32967798 46031 19 0 47 0 SRX3311624 Unrestricted 0.0 Metagenome 3300025359 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_8_10 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025359 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 77193609 186126 130 78 243 142 SRX3002123 Unrestricted 0.0 Metagenome 3300043625 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 245-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043625 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9606 -107.0295 489924669 1428853 546 38 946 62 Unrestricted 6.26 Metagenome 3300025565 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWB_D1 (SPAdes) DOE Joint Genome Institute (JGI) 3300025565 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.015041 -122.501831 259773545 479216 204 1 318 3 SRX7142410 Unrestricted 0.0 Metagenome 3300011891 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S14-03-R University of California, Los Angeles 3300011891 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 42355585 80072 35 0 63 0 SRX869997 0.0 Metagenome 3300006339 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500m University of Hawaii 3300006339 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 1139547028 1648355 1032 57 1256 76 0.0 Metagenome 3300029448 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082 CEA Genoscope 3300029448 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 42.1735 17.7252 252714734 515904 8 1 11 4 0.0 Metagenome 3300022803 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY14 Version 2 University of New South Wales 3300022803 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 56824082 104957 35 6 42 4 0.0 Metagenome 3300021241 *Microbiome Permanent Draft Environmental DNA from river Freshwater microbial communities from Jinzu River in Toyama Prefecture, Japan-20170104_1, 0.2 Toyama Prefectural University 3300021241 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic River Freshwater Unclassified freshwater 36.46646 137.24724 84609308 260922 28 3 66 8 0.0 Metagenome 2166559004 *Microbiome Permanent Draft Marine sediment microbial communities from Little Sippewissett, Falmouth, MA, that are multicellular and magnetotactic MMB 454-1 Pennsylvania State University 2166559004 Metagenome Analysis Geneious released per JGI data release policy No Yes esthersi@usc.edu Esther Singer No Environmental Aquatic Intertidal zone Marine Sediment environment 41.57585 -70.63581 8 1413114 3878 0 0 0 0 0.0 Metagenome 3300025518 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_CSW13A (SPAdes) DOE Joint Genome Institute (JGI) 3300025518 Metagenome Analysis spades v. 3.11.1 Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 110452987 181732 108 3 161 3 SRX3321665 Unrestricted 0.0 Metagenome 3300012972 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG DOE Joint Genome Institute (JGI) 3300012972 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 896125179 2055458 644 12 1151 37 SRX3204994 Unrestricted 0.6 Metagenome 3300042483 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME11May2000D8-rr0151 DOE Joint Genome Institute (JGI) 3300042483 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 699117869 1088113 200 29 291 32 Unrestricted 35.05 Metagenome 3300028557 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_4m DOE Joint Genome Institute (JGI) 3300028557 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater 39.9879 -1.8737 799414245 1281253 410 65 538 92 SRX5248769 Unrestricted 28.08 Metagenome 3300017556 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - LL11-07 University of Michigan 3300017556 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.41803 -85.44348 24359289 32352 11 0 17 0 0.0 Metagenome 3300026753 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A4a-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026753 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 23078731 74587 76 3 168 10 SRX1991273 Unrestricted 0.0 Metagenome 3300023224 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU4 DOE Joint Genome Institute (JGI) 3300023224 Metagenome Analysis spades v. 3.11.1 Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 49.0427 13.6161 26533064 53775 24 16 36 17 SRX4456835 Unrestricted 59.05 Metagenome 3300008413 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765620695 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008413 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 50778842 92406 37 0 65 0 0.0 Metagenome 3300040431 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_001-M-20170829-COMP-DNA1 Battelle Memorial Institute 3300040431 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 4255189 12559 29 1 39 1 0.0 Metagenome 3300027850 *Microbiome Permanent Draft Freshwater microbial communities from lake liftoff mats and glacier meltwater in Antarctica Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-01 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027850 Metagenome Analysis spades v. 3.11.1 Yes Yes slonczewski@kenyon.edu Joan Slonczewski No Environmental Aquatic Ice Freshwater Liftoff microbial mat Freshwater -77.605 163.163 1730188170 2986570 744 34 1066 53 SRX2753506 Unrestricted 0.0 Metagenome 3300021114 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 27JUL2009 epilimnion DOE Joint Genome Institute (JGI) 3300021114 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 24509845 53569 39 9 51 11 Unrestricted 0.0 Metagenome 7000000424 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 158398106 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000424 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 2951708 4460 0 0 0 0 SRX024717, SRX024716, SRX024513, SRX024514 0.0 Metagenome 3300007892 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 763577454 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007892 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 3756821 5198 3 0 4 0 0.0 Metagenome 3300050206 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water microbial communities from Sandhills, Nebraska, United States - NSL_Island_2018_MMG DOE Joint Genome Institute (JGI) 3300050206 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.73473 -102.41005 2279894955 3587658 634 96 940 142 Unrestricted 23.32 Metagenome 3300026061 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleB_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026061 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.224476 -122.019341 70587126 185044 142 4 258 9 SRX7188133 Unrestricted 0.0 Metagenome 3300014309 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleB_D1 DOE Joint Genome Institute (JGI) 3300014309 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jzz0026@lbl.gov; sgtringe@lbl.gov Jinglie Zhou; Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.052509 -121.76873 310468817 752018 540 7 1029 9 SRX7181928 Unrestricted 0.0 Metagenome 3300033420 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from Middle Island sinkhole, Lake Huron, Michigan, United States - MIS.2016.152B DOE Joint Genome Institute (JGI) 3300033420 Metagenome Analysis spades v. 3.13.0 Yes Yes macgregb@umn.edu; sgrim@umich.edu Barbara MacGregor; Sharon Grim No Environmental Aquatic Lake Freshwater Sediment microbial mat 45.1993 -83.3279 393532374 821503 297 27 572 34 SRX7582711 Unrestricted 14.87 Metagenome 3300033995 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056 DOE Joint Genome Institute (JGI) 3300033995 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 913883808 1805023 424 86 630 116 SRX7621688 Unrestricted 10.19 Metagenome 3300023442 *Microbiome Permanent Draft Hydrothermal Fe-rich Mat Reference Genomes Hydrothermal Fe-rich mat microbial community from Rainbow Site, Mid-Atlantic Ridge, Atlantic Ocean - 664-SC8 University of Delaware 3300023442 Metagenome Analysis metaSPAdes v. 3.10.0 Metagenomes associated with bioRxiv doi:10.1101/722066 Yes Yes mcallis@uw.edu Sean McAllister No Environmental Aquatic Hydrothermal vents Marine Microbial mats Hydrothermal Fe-rich mat 36.229322 -33.902767 389358363 609080 214 5 327 10 0.0 Metagenome 3300005733 *Microbiome Permanent Draft Microbial degradation of oil Seawater microbial communities from Vineyard Sound, MA, USA - crude oil ammended T14 University of Wisconsin, Madison 3300005733 Metagenome Analysis velvet released per JGI data release policy No Yes rsimiste@haverford.edu, rlsimister@gmail.com rachel simister, Rachel Simister No Environmental Aquatic Unclassified Marine Unclassified marine 41.4417 -70.7744 63483714 115899 162 0 209 0 0.0 Metagenome 3300022046 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 12 SPOT_SRF_2010-06-29 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022046 Metagenome Analysis spades v. 3.11.1-check Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 11021484 33805 6 10 10 13 SRX5471845, SRX5471847, SRX5471846 Unrestricted 0.0 Metagenome 7000000242 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 550534656 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000242 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 695879 2023 0 0 0 0 0.0 Metagenome 3300037229 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPON1-1-D DOE Joint Genome Institute (JGI) 3300037229 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3569 19.0501 1136689466 2144133 403 15 653 25 SRX8163539 Unrestricted 9.76 Metagenome 3300026941 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 39 (SPAdes) DOE Joint Genome Institute (JGI) 3300026941 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 74432291 173644 87 1 146 1 SRX4340827 Unrestricted 0.0 Metagenome 3300014591 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01158 Weill Cornell Medical College 3300014591 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.69 -73.92 19972887 28379 13 0 21 0 SRX823113 0.0 Metagenome 3300011498 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00215 Weill Cornell Medical College 3300011498 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.76 -73.98 18780083 28436 12 0 19 0 SRX822194 0.0 Metagenome 3300029167 *Microbiome Permanent Draft Infant fecal microbial communities from Pittsburgh, USA Infant fecal microbial communities from Pittsburgh, USA - NECEvent2014_5_8 Banfield Lab, University of California, Berkeley 3300029167 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant fecal 40.4308 -79.9598 48417986 59188 93 0 78 0 0.0 Metagenome 3300029841 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35629 Beijing Genomics Institute (BGI) 3300029841 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 208345876 265096 161 0 263 0 0.0 Metagenome 3300011981 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S01-02-D University of California, Los Angeles 3300011981 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 191617173 307213 170 0 249 0 SRX861018 0.0 Metagenome 3300066298 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_025-M-20140327-COMP-DNA1 re-annotation Argonne National Laboratory 3300066298 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 10343836 31682 41 8 58 7 ERX2133960 0.0 Metagenome 3300006738 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG DOE Joint Genome Institute (JGI) 3300006738 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -13.003 -80.809 491540082 1065462 85 1 103 1 SRX2926264 Unrestricted 0.0 Metagenome 3300025437 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH28Sep08 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025437 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 173402674 356814 103 30 150 32 SRX2565399 Unrestricted 0.0 Metagenome 3300020186 *Microbiome Permanent Draft Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP6.IB-1 DOE Joint Genome Institute (JGI) 3300020186 Metagenome Analysis spades v. 3.10.1 Yes Yes dysumner@ucdavis.edu Dawn Sumner No Environmental Aquatic Lake Freshwater Microbial mats freshwater microbial mat -77.5281 161.59 1099107961 1853503 614 41 955 69 SRX3539177 Unrestricted 25.24 Metagenome 7000000695 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 686765762 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000695 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 61495719 106255 0 0 0 0 0.0 Metagenome 3300002078 *Microbiome Permanent Draft Hypersaline viral and bacterial communities from Bras del Port, Santa Pola, Spain Hypersaline bacterial communities from Bras del Port, Santa Pola, Spain - Bacteroidetes AB577-P23 Lifesequencing S.L. 3300002078 Metagenome Analysis SOAP released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Unclassified Hypersaline samples 38.184722 -0.629444 342247 792 6 0 2 0 0.0 Metagenome 3300049713 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Para, Brazil - P21 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300049713 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Pasture Soil Agricultural land Soil -3.3129 -54.9096 993488533 2251987 767 7 1262 9 Restricted 0.0 Metagenome 3300025758 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4571-4 33-36 cm metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025758 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; teske@email.unc.edu Ramunas Stepanauskas; Andreas Teske No Environmental Aquatic Hydrothermal vents Marine Sediment Marine hydrothermal vent 27.0078 -111.4071 14148566 34631 34 0 67 1 SRX2525220 Unrestricted 0.0 Metagenome 3300000479 *Microbiome Permanent Draft Honey bee gut microbial communities from West Haven, Conneticut, USA Honey bee gut microbial communities from West Haven, Conneticut, USA - Snodgrassella SCG AB-598-P14 Broad Institute 3300000479 Metagenome Analysis released per JGI data release policy No Yes philipp.engel@yale.edu Philipp Engel No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Honey bee gut 32.2743 -110.9388 1946871 5539 2 0 2 0 0.0 Metagenome 3300028717 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158 DOE Joint Genome Institute (JGI) 3300028717 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92057636 -106.94874802 591265619 1549115 401 17 741 20 SRX5354713 Unrestricted 10.97 Metagenome 3300017716 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D DOE Joint Genome Institute (JGI) 3300017716 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 295228121 698520 29 6 49 10 SRX8048354 Unrestricted 55.5 Metagenome 3300006457 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765337473 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006457 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 78283055 135051 62 0 89 0 0.0 Metagenome 3300000541 *Microbiome Permanent Draft Soil microbial communities from the Kellog Biological Station, Michigan, US, in response to alternate cropping systems Switchgrass Nitrogen 403 pre-fert 2011 DOE Joint Genome Institute (JGI) 3300000541 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released per Simon -- IMGSUPP2953 Yes Yes tschmidt@msu.edu Thomas Schmidt, Thomas M. Schmidt No Environmental Terrestrial Unclassified Soil Agricultural land Soil 42.405849 -85.384504 27121428 78417 211 23 337 27 0.0 Metagenome 3300026199 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV51 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026199 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 400551120 773263 284 1 395 4 SRX2781641 Unrestricted 0.0 Metagenome 3300046371 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_171011.NP2 DOE Joint Genome Institute (JGI) 3300046371 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 835998930 1804272 519 84 837 137 Unrestricted 12.14 Metagenome 3300002597 *Microbiome Permanent Draft Camel rumen microbial communities from Jandagh-Isfahan, Iran Camel rumen microbial communities from Jandagh-Isfahan, Iran - Sample 1 Beijing Genomics Institute (BGI) 3300002597 Metagenome Analysis released per Rekha No Yes jgharechahi@gmail.com Javad Gharechahi Yes 30083229 Host-associated Mammals Stomach Digestive system Rumen Camel rumen 34.041281 54.414582 815662394 1921691 152 10 985 21 0.0 Metagenome 3300005679 *Microbiome Permanent Draft Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia Enhanced biological phosphorus removal bioreactor viral communities from the University of Queensland, Australia - SBR4-V91409 Phage Sequencing University of Queensland 3300005679 Metagenome Analysis CLC 6.0 Released per Connor Skennerton (Sep 15, 2015) No Yes c.skennerton@gmail.com Connor Skennerton No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor lab-scale EBPR bioreactor -27.49999 153.012098 6383379 14228 6 0 11 0 0.0 Metagenome 3300045096 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_7_C DOE Joint Genome Institute (JGI) 3300045096 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 196325479 232846 111 1 123 2 Unrestricted 79.89 Metagenome 3300014708 *Microbiome Permanent Draft Seawater microbial communities from Singapore Strait, Singapore Seawater microbial communities from Singapore Strait, Singapore - Site B Oct Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300014708 Metagenome Analysis CLC workbench released by JGI data releasing policy No Yes erinscm@nus.edu.sg Charmaine Ng No Environmental Aquatic Unclassified Marine Unclassified Seawater 1.205291 103.634563 73933959 103825 27 11 23 12 0.0 Metagenome 3300013383 *Microbiome Permanent Draft Baboon gut microbial communities from fecal samples in Kenya Baboon gut microbial communities from fecal samples in Kenya - F07 Duke University 3300013383 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Baboon gut 2.717 37.1 119044757 239976 104 2 208 9 SRX834634 0.0 Metagenome 3300009611 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3747_4435 DOE Joint Genome Institute (JGI) 3300009611 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic 8.2514 -49.9993 45942776 69431 53 3 67 6 SRX2753931 Unrestricted 0.0 Metagenome 3300069288 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_022-O-20170711-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069288 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 62270198 179644 88 9 160 12 0.0 Metagenome 3300027268 *Microbiome Permanent Draft Comparative metagneomics of mesophilic and thermophilic cellulose-adapted consortia Cellulose adapted compost microbial communities from Newby Island Compost Facility, Milpitas, CA, USA - Passage2 37A (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300027268 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer Yes 25136443 Engineered Solid waste Composting Bio- and green waste (BGW) Unclassified Feedstock adapted compost 37.840898 -122.289614 208263223 339579 146 8 203 17 SRX3782539 Unrestricted 0.0 Metagenome 3300043494 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 319-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043494 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9529 -107.0669 430677791 1166349 371 28 729 51 Unrestricted 7.69 Metagenome 3300009476 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407 DOE Joint Genome Institute (JGI) 3300009476 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 741551293 1444641 541 78 999 132 SRX2999667 Unrestricted 0.0 Metagenome 3300044253 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 297-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044253 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9771 -107.0396 428944816 1201237 461 35 770 56 Unrestricted 6.68 Metagenome 3300029189 *Microbiome Permanent Draft Synthetic microbial community for library methods comparison from University of Liverpool, United Kingdom Synthetic microbial communities for library methods comparison from University of Liverpool, United Kingdom - Mg49 University of Liverpool 3300029189 Metagenome Analysis released Yes Yes No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 53.405936 -2.9677609 79836361 113953 97 0 82 0 ERX1325911 0.0 Metagenome 3300008979 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Final time point T65 (1) (BES) benzoate enrichments of Methanogenic microbial communities using Athabasca oil sands as inoculum DE NOVO (2) Shell Corporation 3300008979 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 75476119 236647 114 11 185 13 0.0 Metagenome 3300071063 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_005-M-20180718-COMP-DNA1 3300071063 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 8977442 29339 62 2 125 2 0.0 Metagenome 3300027215 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1546C-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027215 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2311 -123.8825 82375505 180215 148 50 238 55 SRX2753622 Unrestricted 0.0 Metagenome 3300007982 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG DOE Joint Genome Institute (JGI) 3300007982 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jkjarett@lbl.gov, rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca; jkjarett@lbl.gov Jessica Jarett, Ramunas Stepanauskas; Peter Dunfield; Jessica Jarett No Environmental Aquatic Hot (42-90C) Thermal springs Acidic iron-sulfur acid spring 51.1699 -116.1578 4.19 795207322 1282265 590 3 913 6 SRX2745127 Unrestricted 0.0 Metagenome 3300056829 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - APS4_18W_TP2_16O DOE Joint Genome Institute (JGI) 3300056829 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 1926303970 2554701 460 153 594 241 Unrestricted 22.05 Metagenome 3300013830 *Microbiome Permanent Draft Ruminant gut microbial communities from various locations in USA Sheep rumen microbial communities from Wyoming, USA - O_aries_Con_1239 University of Missouri 3300013830 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen 41.314168 -105.584589 181596033 250114 123 4 175 6 SRX331749 0.0 Metagenome 3300022921 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (version 2) DOE Joint Genome Institute (JGI) 3300022921 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 890800181 1582797 345 37 520 49 SRX4081053 Unrestricted 34.71 Metagenome 3300026026 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailB_D2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026026 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.107536 -121.649704 233310133 544791 370 4 580 11 SRX7144831 Unrestricted 0.0 Metagenome 3300059722 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1558A-3 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059722 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2763 -124.0055 105479777 248966 167 59 284 74 SRX2753755 Unrestricted 0.0 Metagenome 3300006030 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA DOE Joint Genome Institute (JGI) 3300006030 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 522173952 1456371 379 13 645 29 SRX2855083 Unrestricted 0.0 Metagenome 3300014184 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Venezuela to Iowa, USA - V4 Iowa State University 3300014184 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 9056100 17912 1 2 0 0 SRX1150311 0.0 Metagenome 3300022201 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_21 DOE Joint Genome Institute (JGI) 3300022201 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Sediment Marine Unclassified sediment 37.79 -122.36 668447791 1633164 712 37 1254 47 SRX4053752 Unrestricted 7.63 Metagenome 3300003839 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Archaeal communities from Yellowstone National Park, Wyoming, USA - Archaeal consortia 3 (5D1_ECH) MetaG DOE Joint Genome Institute (JGI) 3300003839 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Unclassified Thermal springs Unclassified Thermal springs 44.376 -110.69 8403678 10400 3 4 4 1 SRX2577330 Unrestricted 0.0 Metagenome 3300002094 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection B3 DOE Joint Genome Institute (JGI) 3300002094 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.53 -107.78 63701458 157562 117 12 210 21 SRX1990957 Unrestricted 0.0 Metagenome 3300021843 *Microbiome Permanent Draft Metagenomes from anaerobic digester of solid waste Anaerobic digester digestate microbial community, University of Toronto, Ontario, Canada - DG078 spades University of Toronto 3300021843 Metagenome Analysis SPAdes-3.10.1 Yes Yes elizabeth.edwards@utoronto.ca; camillaln@gmail.com Elizabeth A. Edwards; Camilla Nesb? No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic digester digestate 43.5479 -79.6609 1076648503 2408488 716 9 1142 22 0.0 Metagenome 3300049472 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Kansas, USA - kingscreek_2019_sed_WHONDRS-S19S_0040 DOE Joint Genome Institute (JGI) 3300049472 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 39.087889 -96.584725 214366725 532508 566 12 1141 27 Unrestricted 10.49 Metagenome 3300066274 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_016-M-20130709-COMP-DNA1 re-annotation Argonne National Laboratory 3300066274 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 416760 1284 20 5 39 12 ERX2134032 0.0 Metagenome 3300025050 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-54 (SPAdes) DOE Joint Genome Institute (JGI) 3300025050 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 49.5673 -138.6705 101618822 254818 27 0 44 0 Unrestricted 0.0 Metagenome 3300005092 *Microbiome Permanent Draft Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich -34I-102 University of Cincinnati 3300005092 Metagenome Analysis Velvet v. 0.7.57 released per JGI data release policy No Yes rlamendella@lbl.gov Regina Lamendella No Environmental Aquatic Groundwater Freshwater Contaminated Groundwater 40.0 -74.5 0 0 0 0 0 0 0.0 Metagenome 3300036717 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-1-S DOE Joint Genome Institute (JGI) 3300036717 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0474 547222669 998412 207 24 315 39 SRX8137029 Unrestricted 8.4 Metagenome 3300011474 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00607 Weill Cornell Medical College 3300011474 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.79 -73.94 19982326 26028 8 0 12 0 SRX822574 0.0 Metagenome 3300070320 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_006-M-20180730-COMP-DNA1 3300070320 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 39486820 115485 89 15 174 32 0.0 Metagenome 3300038513 *Microbiome Permanent Draft Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China - SA3 v2 Sun Yat-Sen University 3300038513 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy No Yes yuxiaoli92@163.com Xiaoli Yu No Environmental Aquatic Intertidal zone Marine Mangrove sediment mangrove sediment 23.45 116.43 96493429 131501 51 17 99 23 0.0 Metagenome 3300044458 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 364-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044458 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9914 -107.0654 509034382 1301286 447 39 883 64 Unrestricted 7.65 Metagenome 3300053728 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 endosphere DOE Joint Genome Institute (JGI) 3300053728 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121006 -123.270477 455785319 572266 104 60 173 74 Unrestricted 18.26 Metagenome 3300014000 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01613 Weill Cornell Medical College 3300014000 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.81 -73.91 9907999 25860 38 9 58 21 SRX823428 0.0 Metagenome 3300003520 *Microbiome Permanent Draft Estuarine microbial communities from Mobile Bay, Alabama Estuarine microbial communities from Mobile Bay, Alabama - Sample Wi Auburn University 3300003520 Metagenome Analysis released per JGI data release policy No Yes rmm0025@auburn.edu, rmm0025@auburn.edu; mariitarichard@gmail.com Richard M. Mariita, Richard M. Mariita; Richard Mariita No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 30.4464641 -87.9922684 63011793 340499 216 5 462 4 0.0 Metagenome 3300043478 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 024-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043478 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.957 -106.9867 439380145 1138119 404 15 767 26 Unrestricted 7.02 Metagenome 3300045129 *Microbiome Draft Ultra-acidic sulfur-rich Arctic ponds from Smoking Hills, Northwest Territories, Canada Sediment microbial communites from ultra-acidic sulfur-rich Arctic pond from Smoking Hills, Northwest Territories, Canada - SH11 University of Calgary 3300045129 Metagenome Analysis SPAdes v. 3.12.0 released per submitter -- IMGSUPP-4130 Yes Yes pfdunfie@ucalgary.ca; dunfield.bio@gmail.com Peter Dunfield; Dunfield Laboratory No Environmental Aquatic Unclassified Sediment Unclassified Sediment 69.66524327 -126.57943518 0 184451886 396066 58 7 97 17 0.0 Metagenome 3300069483 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_005-M-20160718-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069483 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 19265321 62962 98 8 194 16 0.0 Metagenome 3300044737 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_12BD DOE Joint Genome Institute (JGI) 3300044737 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.3682 -106.1737 1380777657 2245034 419 51 673 82 SRX20649964 Unrestricted 14.45 Metagenome 3300056606 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.16W.13 SIP fraction DOE Joint Genome Institute (JGI) 3300056606 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 188830887 344003 133 60 234 102 Unrestricted 12.28 Metagenome 3300001613 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF029 DOE Joint Genome Institute (JGI) 3300001613 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 2219984 7759 23 2 35 6 SRX2014348 Unrestricted 0.0 Metagenome 3300004009 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2 DOE Joint Genome Institute (JGI) 3300004009 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.045666 -121.866516 875603415 2654029 820 3 1752 12 SRX7142157 Unrestricted 0.0 Metagenome 3300027463 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK03-C (SPAdes) DOE Joint Genome Institute (JGI) 3300027463 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 24078356 80323 91 4 147 9 SRX2575245 Unrestricted 0.0 Metagenome 3300029243 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012057-18 Beijing Genomics Institute (BGI) 3300029243 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 185445425 243066 156 1 229 1 0.0 Metagenome 3300007767 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila suzukii male 6 gut Cornell University 3300007767 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy Yes Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila suzukii male adult gut 42.875296 -77.006403 392550428 439902 12 4 23 5 0.0 Metagenome 3300012633 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00908 Weill Cornell Medical College 3300012633 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.74 -73.89 38016455 54578 25 0 29 1 SRX822871 0.0 Metagenome 3300004155 *Microbiome Permanent Draft Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11 DOE Joint Genome Institute (JGI) 3300004155 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes rallen2@staffmail.ed.ac.uk Rosalind Allen No Environmental Aquatic Pond Freshwater Sediment Freshwater 55.9225 -3.1724 1970872902 5841554 1917 141 4007 282 SRX7158150 Unrestricted 0.0 Metagenome 3300050133 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim2 100-104 DOE Joint Genome Institute (JGI) 3300050133 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.353634 19.04734 261366021 416125 112 8 175 16 Restricted 23.3 Metagenome 3300029304 *Microbiome Permanent Draft Anaerobic bioreactor microbial community of Freshwater lake and wastewater samples from Australia Anaerobic bioreactor microbial community of Freshwater lake and wastewater samples from Australia - AOM-metagenome-Illumina University of Queensland 3300029304 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic bioreactor 169983460 337604 156 0 276 4 SRX317537, SRX317535 0.0 Metagenome 3300042288 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2015-rr0395 DOE Joint Genome Institute (JGI) 3300042288 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1190017130 1822572 416 101 596 161 Unrestricted 16.76 Metagenome 3300061670 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0479 Microbiome Insights 3300061670 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 289258893 412066 56 10 93 8 0.0 Metagenome 3300041551 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Bulk soil microbial community from Lincoln, Canterbury, New Zealand - BS18_8 MetaG AgResearch, New Zealand, Mosgeil 3300041551 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Environmental Terrestrial Unclassified Soil Agricultural land Dairy farm pasture soil -43.648506 172.343549 954361182 2309976 240 24 920 53 0.0 Metagenome 3300036557 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - T0C DOE Joint Genome Institute (JGI) 3300036557 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 185117649 557696 362 18 631 41 SRX8816637 Unrestricted 5.1 Metagenome 3300030441 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019864-169 Beijing Genomics Institute (BGI) 3300030441 Metagenome Analysis Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 177203539 212002 150 2 197 3 0.0 Metagenome 3300070643 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_004-O-20200601-COMP-DNA1 3300070643 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 33987414 92473 69 15 111 28 0.0 Metagenome 3300003175 *Microbiome Permanent Draft Thenella swinhoei microbial communities from Eliat, Israel SP3 microbial community of the marine sponge Thenella swinhoei Haifa University- The Leon H. Charney School of Marine Sciences 3300003175 Metagenome Analysis released per PI No Yes mayabritstein@gmail.com Maya Britstein Yes 26655754 Host-associated Porifera Unclassified Unclassified Unclassified Thenella swinhoei 29.49591 34.91195 34151219 35849 14 1 13 1 0.0 Metagenome 3300024911 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 109_LOW13 (SPAdes) DOE Joint Genome Institute (JGI) 3300024911 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 36046240 58704 19 0 23 0 SRX2721184 Unrestricted 0.0 Metagenome 3300036385 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - P.F.S.T0 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036385 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 140857554 283099 189 0 354 2 SRX4550134, SRX7705823 Unrestricted 0.0 Metagenome 3300017780 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N DOE Joint Genome Institute (JGI) 3300017780 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1881 -86.344 584086229 1367866 6 0 14 0 SRX7205052 Unrestricted 29.16 Metagenome 3300003083 *Microbiome Permanent Draft Acid Mine Drainage (AMD) microbial and viral communities from Richmond mine, Iron Mountain, CA Acid Mine Drainage (ARMAN) microbial communities from Richmond mine, Iron Mountain, CA, sample from UBA Biofilm DOE Joint Genome Institute (JGI), University of California, Berkeley 3300003083 Metagenome Analysis released based on JGI ITS No Yes jill@eps.berkeley.edu, jbanfield@berkeley.edu Banfield, Jillian F., Jill Banfield Yes 14961025 Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid Mine Drainage (AMD) 40.677339 -122.522194 1.28 2632775 2766 1 0 2 0 Unrestricted 0.0 Metagenome 3300038753 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample45 King Abdulaziz City for Science and Technology (KACST) 3300038753 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 27.53 34.3 50761016 106994 65 2 112 6 SRX1097614 0.0 Metagenome 3300039576 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA Corn field soil microbial communities from Boone County, Iowa, USA - CC12-LM-July2012 Iowa State University 3300039576 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land Agricultural soil 42.01375 -93.783837 107035695 307839 131 3 275 3 0.0 Metagenome 3300035641 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18A_1a_4_8 mgh University of Alberta 3300035641 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 70094126 90803 46 2 61 2 0.0 Metagenome 3300034082 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088 DOE Joint Genome Institute (JGI) 3300034082 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1139021532 2139540 293 38 449 56 SRX7622042 Unrestricted 15.71 Metagenome 3300026237 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS upper layer 2012 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026237 Metagenome Analysis spades v. 3.11.1 Yes Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic microbial mat 44.534 -110.7978 206324235 421125 156 2 216 0 SRX2554539 Unrestricted 0.0 Metagenome 3300028054 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_15MAY2017_LD1 DOE Joint Genome Institute (JGI) 3300028054 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 77850177 144773 8 44 6 43 SRX5345786 Unrestricted 22.69 Metagenome 3300008265 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0126-100-LTR University of Michigan 3300008265 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7026 -83.2538 7.983 428526867 637340 33 37 52 29 0.0 Metagenome 3300044851 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - LIV14-9-19-19 DOE Joint Genome Institute (JGI) 3300044851 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.41 -120.7094 334304485 855347 408 45 718 80 Restricted 6.43 Metagenome 3300007789 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159490532 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007789 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 28114781 39595 24 0 41 0 0.0 Metagenome 3300008218 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6 DOE Joint Genome Institute (JGI) 3300008218 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 39.48 5.24 284800938 563511 125 0 202 2 SRX2753824 Unrestricted 0.0 Metagenome 3300005257 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - YNP_Beowulf Spring_D v2 (version 2) DOE Joint Genome Institute (JGI) 3300005257 Metagenome Analysis SPADES v3.5.0 released based on JGI ITS Yes Yes nnivanova@lbl.gov, binskeep@montana.edu Natasha Ivanova, William P. Inskeep Yes 23653623, 26913020 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.733 -110.709 2.85 20124990 35365 22 0 23 0 Unrestricted 0.0 Metagenome 3300031813 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - 1anoA DOE Joint Genome Institute (JGI) 3300031813 Metagenome Analysis spades v. 3.12.0 Yes Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.0411 -89.6861 938421571 1700551 494 87 737 166 SRX8174197 Unrestricted 20.71 Metagenome 3300009518 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_16_150 DOE Joint Genome Institute (JGI) 3300009518 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 366662470 654533 225 5 342 11 SRX3006650 Unrestricted 0.0 Metagenome 2140918032 *Microbiome Permanent Draft Bovine rumen microbial communities from Vernon, TX, USA Bovine rumen microbial communities from Vernon, TX, USA, Sample 669 Texas A and M University 2140918032 Metagenome Analysis Velvet released per Rekha No Yes wshi@ag.tamu.edu Gray Weibing Shi No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen 34.154 -99.264 97713687 190191 730 2 1386 0 0.0 Metagenome 3300002908 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm DOE Joint Genome Institute (JGI) 3300002908 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.718176 -123.652732 967438113 2077504 608 20 1162 24 SRX1991088, SRX1991089 0.0 Metagenome 3300046533 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere DOE Joint Genome Institute (JGI) 3300046533 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1213 -123.2696 1142961179 1862118 340 106 570 132 Unrestricted 13.34 Metagenome 3300040958 *Microbiome Permanent Draft Seawater microbial communities from the Faroe-Shetland Channel, North-East Atlantic Ocean Seawater microbial communities from the Faroe-Shetland Channel, North-East Atlantic Ocean - 700mSIP-HEX-2 DOE Joint Genome Institute (JGI) 3300040958 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tony.gutierrez@hw.ac.uk Tony Gutierrez No Environmental Aquatic Oceanic Marine Unclassified seawater 60.38 -4.54 85358938 97259 25 0 29 0 SRX9536173 Unrestricted 576.01 Metagenome 3300026747 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A3-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300026747 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 22335385 76149 116 1 175 5 SRX1991112 Unrestricted 0.0 Metagenome 3300034199 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14 DOE Joint Genome Institute (JGI) 3300034199 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9123 -147.839 430722754 1053608 293 46 534 85 SRX7633917 Unrestricted 6.47 Metagenome 3300011368 *Microbiome Permanent Draft Aquatic microbial communities from acid salt lake of Yilgarn Craton in Western Australia Sediment microbial communities from salt lake in Western Australia - Yilgarn Craton Acid Salt Lake Sediment Harvard University 3300011368 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Saline Non-marine Saline and Alkaline Sediment Sediment -33.25 121.41 6689287 12847 1 2 4 4 SRX699729 0.0 Metagenome 3300009359 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Final time point T65 (3) (live) benzoate enrichments of Methanogenic microbial communities using Athabasca oil sands as inoculum DE NOVO (2) Shell Corporation 3300009359 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 71950632 212323 80 0 140 3 0.0 Metagenome 3300040617 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_006-M-20140707-COMP-DNA1 Argonne National Laboratory 3300040617 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 1461209 4301 26 6 42 7 ERX2134004 0.0 Metagenome 3300020818 *Microbiome Permanent Draft Metagenomes from anaerobic digester of solid waste Food waste and fibre mixture microbial community, University of Toronto, Ontario, Canada - LBfeed2 University of Toronto 3300020818 Metagenome Analysis Megahit v1.1.1 Yes Yes elizabeth.edwards@utoronto.ca; camillaln@gmail.com Elizabeth A. Edwards; Camilla Nesb? No Engineered Solid waste Unclassified Household waste Unclassified food waste 43.6629 -79.3957 1044915087 1916515 455 197 682 309 SRX4965140, SRX4986165 0.0 Metagenome 3300059710 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary, USA - metaG S.757 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059710 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.234 -123.9135 243763752 569363 347 64 615 110 SRX2838000 Unrestricted 0.0 Metagenome 3300002228 *Microbiome Permanent Draft Marine microbial communities from the Baltic Sea examining degradability of arctic, terrigenous carbon compounds in the sea Marine microbial communities from the Baltic Sea - S2t7 FKBa (104N) Karolinska Institutet 3300002228 Metagenome Analysis released per JGI data release policy No Yes daniel.herlemann@io-warnemuende.de, daniel.herlemann@emu.ee Daniel Herlemann, Daniel P. Herlemann No Environmental Aquatic Oceanic Marine Unclassified Marine 57.305 20.0745 197840920 1002157 221 42 386 74 0.0 Metagenome 3300032080 *Microbiome Permanent Draft Soil and marine airborne microbial communities from various locations Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016 DOE Joint Genome Institute (JGI) 3300032080 Metagenome Analysis spades v. 3.13.0 Yes Yes susannah.burrows@pnnl.gov Susannah Burrows No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 36.36 -97.29 2175771319 5532212 1611 162 2910 220 SRX6412080 Unrestricted 8.57 Metagenome 3300009565 *Microbiome Permanent Draft Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea North East Pacific Ocean microbial community - Bloomer_DOMexp_control_27hr_metagenome Massachusetts Institute of Technology 3300009565 Metagenome Analysis Greengenes NAST aligner, Ribosomal Database Project (RDP) naive Bayesian classifier released per JGI data release policy No Yes sarabc@mit.edu Sara Collins No Environmental Aquatic Epipelagic Marine Unclassified open ocean 23.214666 -159.136166 99482686 392500 407 16 758 13 0.0 Metagenome 3300018000 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex DOE Joint Genome Institute (JGI) 3300018000 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 586498319 1392514 667 13 1419 36 SRX3938852 Unrestricted 5.43 Metagenome 3300003512 *Microbiome Permanent Draft Macrotidal river microbial communities from the South Alligator River system, Northern Australia Macrotidal river microbial communities from the South Alligator River system, Northern Australia - Sample CTD2 sed R1 3300003512 Metagenome Analysis released per JGI data releasing policy No Yes c.stretenjoyce@aims.gov.au Claire Streten-Joyce No Environmental Aquatic River Freshwater Sediment Macrotidal river -12.2376 132.4096 26357982 73140 13 0 29 1 0.0 Metagenome 3300029733 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37172 Beijing Genomics Institute (BGI) 3300029733 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 166765496 214438 151 0 198 0 0.0 Metagenome 3300045417 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_10m_2014 DOE Joint Genome Institute (JGI) 3300045417 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 303362298 555648 178 21 328 31 Unrestricted 27.44 Metagenome 3300064807 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 615 in Smith, Alberta, Canada - S00JY_0670 Microbiome Insights 3300064807 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 55.07270132 -113.545927 40052295 56508 22 0 36 0 0.0 Metagenome 3300033166 *Microbiome Permanent Draft Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_31_08-R3 DOE Joint Genome Institute (JGI) 3300033166 Metagenome Analysis spades v. 3.13.0 Yes Yes ziels@mail.ubc.ca Ryan Ziels No Engineered Bioreactor Unclassified Anaerobic Unclassified sludge 51.9691 5.6654 369318735 538627 367 0 472 1 SRX7542620 Unrestricted 59.82 Metagenome 3300000356 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM176 Beijing Genomics Institute (BGI), Macrogen 3300000356 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 66319988 77429 307 1 399 0 0.0 Metagenome 3300042306 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Jun2017-rr0410 DOE Joint Genome Institute (JGI) 3300042306 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 666018115 1073734 231 42 349 67 Unrestricted 18.72 Metagenome 3300008009 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-18 DOE Joint Genome Institute (JGI) 3300008009 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 874000879 1536343 855 35 1453 66 SRX3198557 Unrestricted 0.0 Metagenome 3300027634 *Microbiome Permanent Draft Thawing permafrost microbial communities from the Arctic, studying carbon transformations Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812S1M (version 2) DOE Joint Genome Institute (JGI) 3300027634 Metagenome Analysis spades v. 3.11.1 Yes Yes rich.270@osu.edu Virginia Rich Yes 30013118 Environmental Terrestrial Wetlands Soil Permafrost Thawing permafrost 68.3532 19.0475 279731945 856232 98 12 152 30 SRX2774890 Unrestricted 0.0 Metagenome 3300000648 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion DOE Joint Genome Institute (JGI) 3300000648 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300043023 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver small intestine microbial communities from Maple Ridge, British Columbia, Canada - Beaver6Small.Intestine1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043023 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Small intestine Digestive system Unclassified small intestine 49.18 -122.54 67514058 114401 2 1 5 4 SRX8346483 Unrestricted 37.98 Metagenome 3300035102 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B5.10_Sample5.Rodeo10.Well662 DOE Joint Genome Institute (JGI) 3300035102 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 360229811 562465 298 1 424 0 SRX8354115 Unrestricted 29.72 Metagenome 3300043364 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 259-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043364 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9794 -107.0402 656092988 1822949 561 10 1012 23 Unrestricted 6.25 Metagenome 3300032104 *Microbiome Permanent Draft Microbial communities from the deep biosphere Marine sediment microbial communities from North Pond in Mid-Atlantic Ridge, Atlantic Ocean - 1384A re-assembly The Marine Biological Laboratory 3300032104 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Sediment Marine Unclassified Sediment 22.81 -46.09 74527163 175975 31 12 96 31 SRX2505628 0.0 Metagenome 3300009758 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3611_800 DOE Joint Genome Institute (JGI) 3300009758 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic 0.0014 -33.4979 180915659 284741 42 79 19 108 SRX2753929 Unrestricted 0.0 Metagenome 3300011769 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00731 Weill Cornell Medical College 3300011769 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.71 -74.0 43810727 56587 20 0 22 0 SRX822698 0.0 Metagenome 3300008155 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 370425937 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008155 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 160898707 217925 123 0 193 1 0.0 Metagenome 3300007206 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human subgingival plaque microbial communities from NIH, USA - visit 1, subject 763961826 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007206 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human 39.0042816 -77.1012173 179466532 329775 181 2 288 1 0.0 Metagenome 3300020411 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000131 (ERX556098-ERR599130) CEA Genoscope 3300020411 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 5.9997 73.914 1001408238 2477135 402 4 733 11 0.0 Metagenome 3300032523 *Microbiome Permanent Draft Meromitic Lake A Freshwater microbial communities from meromitic lake A, Ellesmere Island, Canada - Sample 6m Laval University 3300032523 Metagenome Analysis Megahit v. 1.0.5 released by JGI data releasing policy Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 82.99445 -75.443367 712454033 1299844 229 17 436 31 0.0 Metagenome 3300020676 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 22MAY2008 epilimnion DOE Joint Genome Institute (JGI) 3300020676 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 5188239 13967 24 4 36 2 Unrestricted 0.0 Metagenome 3300012464 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100545 University of Pennsylvania 3300012464 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 15721274 28780 16 3 21 3 SRX756209 0.0 Metagenome 3300019132 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - early-mid stage, 49.5 hrs after wetting v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300019132 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 178160071 340027 275 10 408 20 0.0 Metagenome 3300005841 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 DOE Joint Genome Institute (JGI) 3300005841 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 6224092715 17541360 3940 391 6593 820 SRX2837051 Unrestricted 0.0 Metagenome 3300005167 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0919_12_20cm DOE Joint Genome Institute (JGI) 3300005167 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2414419531 6650735 2329 76 4070 112 SRX2519697 Unrestricted 0.0 Metagenome 3300001760 *Microbiome Permanent Draft Wastewater microbial communities from Belvaux, Luxembourg Wastewater microbial communities from Belvaux, Luxembourg - M40 3300001760 Metagenome Analysis CLC genomics Workbench released by JGI data releasing policy Yes Yes goux@lippmann.lu, xavier.goux@list.lu Xavier Goux No Engineered Bioreactor Sludge Anaerobic Unclassified Wastewater 49.506095 5.943536 31943412 36667 16 0 18 0 0.0 Metagenome 3300007926 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763901136 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007926 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 49155624 88731 48 0 69 0 0.0 Metagenome 3300027930 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_10_18 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027930 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 30999565 40266 30 0 30 1 SRX2924398 Unrestricted 0.0 Metagenome 3300012002 *Microbiome Permanent Draft Saline lake microbial mat microbial communities from Tebenquiche Lake, II Region de Antofagasta, Chile Saline lake microbial mat microbial communities from Tebenquiche Lake, II Region de Antofagasta, Chile - Tebenquiche 201212 INDEAR Instituto de Agrobiotecnologia Rosario 3300012002 Metagenome Analysis SPAdes 3.8.0 released by JGI data releasing policy Yes Yes dgkurt@gmail.com Daniel Kurth No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats saline lake microbial mat -23.138472 -68.247194 7.8 621405493 677415 169 4 220 2 ERX2456844, ERX2456845 0.0 Metagenome 3300009437 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414 DOE Joint Genome Institute (JGI) 3300009437 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 617402177 1178627 446 101 827 143 SRX2999664 Unrestricted 0.0 Metagenome 3300013406 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100161 University of Pennsylvania 3300013406 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4605679 7920 4 2 4 2 SRX756371 0.0 Metagenome 3300044247 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 044-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044247 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9209 -106.9509 414428052 1074915 486 19 905 35 Unrestricted 7.24 Metagenome 3300005189 *Microbiome Permanent Draft Mallorca 2014 E2 E2 T11 University of Alicante 3300005189 Metagenome Analysis IDBA 1.1.1 PRE correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline 39.338015 3.051796 29083238 78414 3 0 2 0 0.0 Metagenome 3300020122 *Microbiome Permanent Draft Soil bacterial communities from Switchgrass agricultural field in Lux Arbor, Michigan, USA Soil bacterial communities from Switchgrass agricultural field in Lux Arbor, Michigan, USA - site U2, unfertilized Michigan State University 3300020122 Metagenome Analysis Megahit released by JGI data releasing policy Yes Yes aarongaroutte@gmail.com Aaron J. Garoutte No Environmental Terrestrial Unclassified Soil Agricultural land Soil 42.4891 -85.4641 5006909413 8629332 1301 53 2069 80 0.0 Metagenome 3300043580 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 061-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043580 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9215 -106.9517 395936659 1009167 383 8 719 21 Unrestricted 7.37 Metagenome 3300004265 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/10/14 3 um filter DOE Joint Genome Institute (JGI) 3300004265 Metagenome Analysis MEGAHIT v. 0.2.0 revert back to private per Christa Yes Yes jbanfield@berkeley.edu, jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield, Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 813327234 1941025 1177 66 2043 126 SRX2770552 Unrestricted 0.0 Metagenome 3300024054 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Lake Towuti, South Sulawesi, Indonesia - Watercolumn_Towuti2014_140_MG DOE Joint Genome Institute (JGI) 3300024054 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.7 121.4042 1190577949 1921934 733 5 1125 7 SRX4481884 Unrestricted 21.04 Metagenome 3300003752 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 DOE Joint Genome Institute (JGI) 3300003752 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 100701239 164181 67 0 107 0 SRX2770681 Unrestricted 0.0 Metagenome 3300034061 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028 DOE Joint Genome Institute (JGI) 3300034061 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1590566960 3048256 654 59 939 93 SRX7621638 Unrestricted 13.38 Metagenome 3300070279 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Alaska, USA - DEJU_048-O-20160817-COMP-DNA1 3300070279 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 3673123 11184 16 3 27 6 0.0 Metagenome 3300013138 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo - kab_022012_12m DOE Joint Genome Institute (JGI) 3300013138 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -1.64 29.05 2040207989 3518445 1776 42 2703 78 SRX7700133 Unrestricted 17.06 Metagenome 3300061116 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIIF4SW no PMA treatment Jet Propulsion Laboratory, California Institute of Technology 3300061116 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 5101343 5220 4 6 10 6 SRX3244861, SRX3808508, SRX3244868, SRX3808513 0.0 Metagenome 3300045145 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_1_C DOE Joint Genome Institute (JGI) 3300045145 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 168407659 201481 99 1 134 2 Unrestricted 132.91 Metagenome 3300028911 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012252-108 Beijing Genomics Institute (BGI) 3300028911 Metagenome Analysis released Yes Yes mhuntemann@lbl.gov gbp No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 119457281 151717 79 0 139 0 0.0 Metagenome 3300011787 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00582 Weill Cornell Medical College 3300011787 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.74 -73.98 38876862 59541 19 0 53 0 SRX822549 0.0 Metagenome 3300015180 *Microbiome Permanent Draft Human fecal microbial communities from infant diaper, Dhaka, Bangladesh Human fecal microbial communities from infant diaper, Dhaka, Bangladesh - DMDT001Q Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300015180 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes dhtaft@ucdavis.edu Diana Taft No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant feces 23.8103 90.4125 15413321 33081 28 0 61 0 0.0 Metagenome 3300047328 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Southern Region, Iceland - Sphagnum auriculatum 1_AUR_ICE DOE Joint Genome Institute (JGI) 3300047328 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.1138 -20.496 1368139372 2063844 462 100 618 192 SRX14786660 Unrestricted 9.09 Metagenome 3300029679 *Microbiome Permanent Draft Human fecal microbial communities from healthy and liver cirrhosis patients in Hangzhou, China Human fecal microbial communities from healthy subjects in Hangzhou, China - HD-50_Run5 Zhejiang University 3300029679 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 30.0 120.0 129820388 176818 101 0 139 0 0.0 Metagenome 7000000093 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 638754422 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000093 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Ivanova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 113835555 171398 0 0 0 0 0.0 Metagenome 3300023074 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L028-104C-2 DOE Joint Genome Institute (JGI) 3300023074 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 430434393 920495 473 67 800 132 SRX4798554 Unrestricted 10.4 Metagenome 3300004772 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0.5M DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300004772 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu, tmcmahon@engr.wisc.edu; shaomei.he@gmail.com Katherine McMahon, Katherine McMahon; Shaomei He No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 537504403 1289707 482 107 808 210 SRX2518377 Unrestricted 0.0 Metagenome 3300045538 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Missouri River, Nebraska, USA - NASQAN2010_155 DOE Joint Genome Institute (JGI) 3300045538 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 41.2588 -95.9225 453267983 1066937 515 146 884 235 Unrestricted 0.0 Metagenome 2018235000 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of healthy infants and adults Gut Microbiota of 1 Month Old Human Infant DOE Joint Genome Institute (JGI) 2018235000 Metagenome Analysis Released by Nikos bc they were more than 5 years old No Yes francino_pil@gva.es M. Pilar Francino Yes 20333224 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 43793858 86648 0 0 0 0 0.0 Metagenome 3300004218 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 86_LOW11 DOE Joint Genome Institute (JGI) 3300004218 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 48411056 101025 38 8 69 9 SRX2721148 Unrestricted 0.0 Metagenome 3300025611 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC107_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025611 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 22.28 114.17 369146168 682492 325 1 426 1 SRX2338864 Unrestricted 0.0 Metagenome 3300059434 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - HDCR1D-21 DOE Joint Genome Institute (JGI) 3300059434 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 729991086 1269427 668 60 1138 96 Unrestricted 0.0 Metagenome 7000000705 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 160319967 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000705 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 1549494 3943 0 0 0 0 SRX022938, SRX022939 0.0 Metagenome 3300025476 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA14M (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025476 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu; shaomei.he@gmail.com Katherine McMahon; Shaomei He No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 218251892 483224 285 0 488 4 SRX2565138 Unrestricted 0.0 Metagenome 3300048851 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD5 DOE Joint Genome Institute (JGI) 3300048851 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.347657 -119.2808 896168052 1224312 204 91 226 108 Unrestricted 40.04 Metagenome 3300013545 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100365 University of Pennsylvania 3300013545 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 433419 942 1 2 4 1 SRX756292 0.0 Metagenome 3300032389 *Microbiome Permanent Draft Understanding the reciprocal impacts of modified plant cell wall and associated microbiome Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2 DOE Joint Genome Institute (JGI) 3300032389 Metagenome Analysis spades v. 3.13.0 Yes Yes kalluriudayc@ornl.gov Udaya C. Kalluri No Host-associated Plants Stem Phyllosphere Wood/Secondary xylem xylem 32.1348 -81.9657 485861254 467678 41 50 52 82 SRX6871667 Unrestricted 119.4 Metagenome 3300001015 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1120 DOE Joint Genome Institute (JGI) 3300001015 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 94572 268 22 4 31 4 SRX1987160 Unrestricted 0.0 Metagenome 3300035548 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B5.6_Sample5.Rodeo6.Well1132 DOE Joint Genome Institute (JGI) 3300035548 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 513126482 877387 487 0 778 0 SRX8354380 Unrestricted 21.0 Metagenome 3300031211 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #784 DOE Joint Genome Institute (JGI) 3300031211 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4563 78.1898 487295888 840716 117 34 142 43 SRX5649542 Unrestricted 29.52 Metagenome 3300000764 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 03JUN2009 epilimnion DOE Joint Genome Institute (JGI) 3300000764 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300009050 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1557A-02 DOE Joint Genome Institute (JGI) 3300009050 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2763 -124.0055 254299943 492156 271 8 452 17 SRX2753742 Unrestricted 6.62 Metagenome 3300014674 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00262 Weill Cornell Medical College 3300014674 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.97 30249077 53348 18 0 41 0 SRX822235 0.0 Metagenome 3300033121 *Microbiome Finished Gwangju Wastewater Treatment Plant Virome, South Korea Activated sludge viral community from Gwangju wastewater treatment plant, Gwangju, South Korea - GWWTP-sludge v.1 Macrogen 3300033121 Metagenome Analysis SPAdes v. 3.10.1 released by JGI data releasing policy No Yes chojc@inha.ac.kr Jang-Cheon Cho No Engineered Wastewater Unclassified Activated Sludge Unclassified Activated sludge 35.088441 126.793113 61625924 89351 0 0 0 0 0.0 Metagenome 3300056796 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.16W.15 SIP fraction DOE Joint Genome Institute (JGI) 3300056796 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 32768042 62522 44 15 75 23 Unrestricted 20.09 Metagenome 3300001948 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Chesapeake Bay, Maryland, USA - GS012 J. Craig Venter Institute (JCVI) 3300001948 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine 38.946945 -76.41722 75617290 128025 60 0 105 1 0.0 Metagenome 3300044931 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_6_A DOE Joint Genome Institute (JGI) 3300044931 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 192486930 232643 104 1 136 2 Unrestricted 68.81 Metagenome 3300029092 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 10_M Beijing Genomics Institute (BGI) 3300029092 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 149075007 189134 102 0 172 0 ERX490934 0.0 Metagenome 3300044776 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_184 DOE Joint Genome Institute (JGI) 3300044776 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 747257349 1745553 440 9 807 19 Unrestricted 7.76 Metagenome 3300035135 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Wetland water microbial microbial communities from coastal wetland in Texas, United States - D0606WATER DOE Joint Genome Institute (JGI) 3300035135 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Unclassified seawater 27.8973 -97.0409 645753873 1387670 362 37 559 76 SRX8257429 Unrestricted 14.3 Metagenome 3300037692 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_070717_125_145_jgi DOE Joint Genome Institute (JGI) 3300037692 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2053362525 3216512 910 17 1528 27 SRX9162535 Unrestricted 13.6 Metagenome 3300013654 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100241 University of Pennsylvania 3300013654 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 6750832 18638 15 0 23 0 SRX756660 0.0 Metagenome 3300001068 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0372 DOE Joint Genome Institute (JGI) 3300001068 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -15.83 -33.41 51148844 122914 99 3 173 9 SRX1983211 Unrestricted 0.0 Metagenome 3300043756 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Para, Brazil - P12 DOE Joint Genome Institute (JGI) 3300043756 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -3.2938 -54.8511 1040731547 2495611 447 15 902 34 Unrestricted 8.11 Metagenome 3300040130 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_003-M-20130627-COMP-DNA1 Argonne National Laboratory 3300040130 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 11305225 33354 48 2 79 4 ERX2133974 0.0 Metagenome 3300059786 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1550B-3 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059786 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2328 -123.878 92557169 220967 197 84 304 127 SRX2753722 Unrestricted 0.0 Metagenome 3300026082 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_O2min_ad_340m_LV (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026082 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 249245682 580815 231 21 450 31 SRX2776056 Unrestricted 0.0 Metagenome 2140918005 *Microbiome Permanent Draft Coastal water and sediment microbial communities from Arctic Ocean, off the coast from Alaska Marine sediment microbial communities from Arctic Ocean, off the coast from Alaska - sample from high methane PC12-225-485cm DOE Joint Genome Institute (JGI) 2140918005 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes kirchman@cms.udel.edu, kirchman@udel.edu David Kirchman No Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Coastal water and sediment 74.0678 -145.54687 310086717 674403 320 26 576 0 Unrestricted 0.0 Metagenome 3300006248 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 246515023 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006248 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 74434349 139929 112 0 176 1 0.0 Metagenome 3300007133 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Seawater microbiome, Papua New Guinea CO2 seep, Dobu ""bubble"", water-ds" University of New South Wales 3300007133 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au Nicole Webster No Environmental Aquatic Volcanic Marine Unclassified Volcanic CO2 seeps -9.73665 150.867667 110513264 274946 172 1 293 0 0.0 Metagenome 3300033412 *Microbiome Permanent Draft Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC DOE Joint Genome Institute (JGI) 3300033412 Metagenome Analysis spades v. 3.12.0 Yes Yes colin.averill@usys.ethz.ch; jmtalbot@bu.edu Colin Averill; Jennifer Bhatnagar No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 36.0 -78.0 2724812242 4821493 2340 55 3794 103 SRX5787951 Unrestricted 20.65 Metagenome 3300049660 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D2_B_0_control DOE Joint Genome Institute (JGI) 3300049660 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 273729913 622719 417 18 846 34 Unrestricted 11.19 Metagenome 3300036911 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 E2 10-14 DOE Joint Genome Institute (JGI) 3300036911 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0468 411886828 859103 250 50 417 69 SRX8138857 Unrestricted 8.68 Metagenome 3300041917 *Microbiome Finished Microbial communities from various locations in Russia In situ enrichment of hot spring microbial communities from Vertoletniy spring, Uzon, Kamchatka - 3808Xyl Winogradsky Institute of Microbiology 3300041917 Metagenome Analysis MegaHit v. 1.2.9 released by JGI data releasing policy No Yes kublanov.ilya@gmail.com Ilya V. Kublanov No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring water and sediment 54.50005 160.0072917 58341342 106881 55 0 83 0 0.0 Metagenome 3300008300 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 686765762 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008300 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 55515316 115130 54 1 87 2 0.0 Metagenome 3300032367 *Microbiome Permanent Draft STAs constructed wetland biome Wetland sediment microbial communities from Everglades, Florida, USA - STA19-Sample02_1 Combine2 University of Florida 3300032367 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy No Yes ng.hanh24@gmail.com Hanh Nguyen No Environmental Aquatic Wetlands Freshwater Sediment sediment 26.38 -80.51 6.6-8.4 33898053 43416 36 0 72 0 0.0 Metagenome 3300022727 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLU3 DOE Joint Genome Institute (JGI) 3300022727 Metagenome Analysis spades v. 3.11.1-check Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 49.0431 13.617 18865254 53499 70 44 144 67 SRX4456466 Unrestricted 8.45 Metagenome 3300043107 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - Beaver6Cecum1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043107 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.18 -122.54 280852363 546416 532 30 865 48 SRX8346484 Unrestricted 41.72 Metagenome 3300041658 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_129 MetaG AgResearch, New Zealand, Mosgeil 3300041658 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 775051963 1752478 332 33 1099 49 0.0 Metagenome 3300060591 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210531_04_17 DOE Joint Genome Institute (JGI) 3300060591 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 505097517 780959 197 83 294 124 Unrestricted 26.03 Metagenome 3300047202 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2015 IH-HC-9_1cm DOE Joint Genome Institute (JGI) 3300047202 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.3581 19.0481 380458621 616549 219 0 398 0 Restricted 28.9 Metagenome 3300034026 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 42SMS DOE Joint Genome Institute (JGI) 3300034026 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Sub-biocrust Soil Unclassified sub-biocrust soil 34.7856 -115.66 213915073 496636 353 5 589 11 SRX7621459 Unrestricted 9.82 Metagenome 3300027158 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF011 (SPAdes) DOE Joint Genome Institute (JGI) 3300027158 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 148548677 351065 49 3 101 8 SRX2014340 Unrestricted 0.0 Metagenome 3300011962 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00482 Weill Cornell Medical College 3300011962 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.81 -73.9 53842805 83474 24 0 41 0 SRX822451 0.0 Metagenome 3300038747 *Microbiome Draft Non-marine hypersaline viral communities of Tuz Lake, Turkey Non-marine hypersaline viral communities of Tuz Lake, Turkey - Tuz Lake salt spades_assembly_filtered University of Alicante 3300038747 Metagenome Analysis Spades v. 3.10.1 released by JGI data releasing policy No Yes albayrakece@gmail.com ece albayrak No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Non-marine hypersaline salt 38.7627 33.3486 19648057 44231 0 0 0 0 0.0 Metagenome 3300002423 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP03-I2 3300002423 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300039811 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_001-M-20170619-COMP-DNA1 Battelle Memorial Institute 3300039811 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 30313933 85823 94 12 153 20 0.0 Metagenome 3300061180 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_044-O-20210803-comp-1 DOE Joint Genome Institute (JGI) 3300061180 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tundra Soil Unclassified Terrestrial soil 68.658157 -149.362189 2126661703 3593818 637 134 1141 187 Unrestricted 14.96 Metagenome 3300049044 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - E15_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049044 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 287997902 643818 346 13 638 25 Unrestricted 0.0 Metagenome 3300043649 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 352-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043649 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9892 -107.0642 540658948 1289372 333 48 627 85 Unrestricted 7.84 Metagenome 3300002302 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 05MAR2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002302 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 33686835 85427 56 57 111 102 SRX1989751 Unrestricted 0.0 Metagenome 3300043516 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-287 Genome Quebec 3300043516 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 52.645011 -103.306995 972484082 2218102 394 82 555 147 0.0 Metagenome 7000000732 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 763901136 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000732 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 3476170 4683 0 0 0 0 0.0 Metagenome 3300005304 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - engineered for negative control 2 Cornell University 3300005304 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy No Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Engineered Unclassified Unclassified Unclassified Unclassified Negative control 42.445525 -76.480787 653486 1348 2 0 6 0 0.0 Metagenome 3300026276 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-060 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026276 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Permafrost soil 68.6137 -149.3144 239264770 517277 262 1 461 4 SRX2755582 Unrestricted 0.0 Metagenome 3300007041 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina ""control"", water-ic" University of New South Wales 3300007041 Metagenome Analysis IDBA-UD released by Emmanuelle BOTTE Yes Yes n.webster@aims.gov.au Nicole Webster No Environmental Aquatic Volcanic Marine Unclassified Volcanic CO2 seep -9.828217 150.820517 51164258 129484 86 0 156 1 0.0 Metagenome 3300037245 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_3500m_C2_20cm25cm DOE Joint Genome Institute (JGI) 3300037245 Metagenome Analysis metaspades v. 3.13.0 Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.6077 -122.6196 1706825064 2752193 675 1 1034 3 SRX8382852 Unrestricted 16.06 Metagenome 3300027393 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_4-Nov-14 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027393 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 211638254 545053 401 88 755 128 SRX2838984 Unrestricted 0.0 Metagenome 3300014970 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 598_4M Beijing Genomics Institute (BGI) 3300014970 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 46802854 53819 19 0 35 0 ERX491256 0.0 Metagenome 3300070918 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Alaska, USA - DEJU_015-O-20180619-COMP-DNA1 3300070918 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 3205630 10151 56 20 82 34 0.0 Metagenome 3300029257 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002658-45 Beijing Genomics Institute (BGI) 3300029257 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 158822783 183206 100 0 139 0 0.0 Metagenome 3300003959 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Enrichment cultures from Harmful Algal Blooms in Lake Erie, HABS-00-39871 University of Michigan 3300003959 Metagenome Analysis IDBA-UD v1.1.1 released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lentic Freshwater Unclassified Freshwater -77.611214 163.119356 33537965 35473 23 1 19 0 0.0 Metagenome 3300070657 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_010-O-20180723-COMP-DNA1 3300070657 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 159040596 465020 215 8 438 13 0.0 Metagenome 3300021976 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - L2c1 DOE Joint Genome Institute (JGI) 3300021976 Metagenome Analysis spades v. 3.11.1-check Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.883 -106.9108 454087911 808735 183 39 307 57 SRX3958717, SRX3958716 Unrestricted 0.0 Metagenome 3300037370 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_C3 DOE Joint Genome Institute (JGI) 3300037370 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 334437338 800865 216 25 373 48 SRX9146690 Unrestricted 6.4 Metagenome 3300007961 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Rumen-fistulated moose microbial communities from Alaska, USA - LMS_cellobiose_enrichment DOE Joint Genome Institute (JGI) 3300007961 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes kwrighton@gmail.com Kelly Wrighton No Host-associated Mammals Stomach Digestive system Rumen fluid Rumen-fistulated moose 61.566367 -149.2538247 359157143 502648 640 1 882 3 SRX2752462 Unrestricted 0.0 Metagenome 3300036543 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B5.9_Sample5.Rodeo9.Well1132 DOE Joint Genome Institute (JGI) 3300036543 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 199604762 363554 223 0 352 0 SRX8355403 Unrestricted 63.44 Metagenome 3300070965 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_001-M-20160712-COMP-DNA1 3300070965 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 10904792 35044 38 6 93 12 0.0 Metagenome 3300013950 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - sediment SCG82 University of British Columbia 3300013950 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Sediment Marine 169257 592 0 0 0 0 SRX143191 0.0 Metagenome 3300012035 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT338_2 DOE Joint Genome Institute (JGI) 3300012035 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9777 -107.0024 226883920 532054 318 35 669 61 SRX3539335 Unrestricted 0.0 Metagenome 3300070821 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from North Sterling, Colorado, USA - STER_012-M-20170606-COMP-DNA1 3300070821 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Agricultural land Soil 1345851 4242 12 1 17 0 0.0 Metagenome 3300007825 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764305738 replicate 2 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007825 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 38176663 64888 26 0 43 0 0.0 Metagenome 3300004203 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 27_LOW6 DOE Joint Genome Institute (JGI) 3300004203 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 109217479 287524 76 0 149 0 SRX2720162 Unrestricted 0.0 Metagenome 3300037107 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 C-1-X0 DOE Joint Genome Institute (JGI) 3300037107 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3544 19.048 670549265 1313960 393 2 656 6 SRX8162018 Unrestricted 8.94 Metagenome 3300042838 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184 NMDC pilot DOE Joint Genome Institute (JGI) 3300042838 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92030701 -106.94839471 617836754 1661493 545 19 1007 34 SRX5354722 0.0 Metagenome 3300009124 *Microbiome Permanent Draft Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf Oregon State University 3300009124 Metagenome Analysis MetaSpades released per JGI data release policy No Yes michaelgraw@gmail.com Michael Graw No Environmental Aquatic Cold seeps Marine Sediment sediment 39.54345 -72.3998 .72 1629719934 5004931 716 129 1497 253 0.0 Metagenome 3300034791 *Microbiome Permanent Draft Marine microbial communities from Baffin Bay, Canada Marine microbial communities from Baffin Bay, Canada - S115_30m Genome Quebec 3300034791 Metagenome Analysis SPades v. 3.12.0 released by JGI data releasing policy Yes Yes thomas.grevesse@gmail.com Thomas Grevesse No Environmental Aquatic Oceanic Marine Photic zone marine 76.20297 -71.11524 690429371 1655969 340 91 559 182 0.0 Metagenome 3300023060 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - IR.B.S.T0 DOE Joint Genome Institute (JGI) 3300023060 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat, Wetlands Soil Mire, Peat soil 68.3529 19.0475 128170762 315718 142 37 280 47 SRX4415303 Restricted 29.6 Metagenome 3300029897 *Microbiome Permanent Draft Cryoconite microbial communities around the Greenland ice sheet Cryoconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_L-B2b DMAC, Technical University of Denmark 3300029897 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Ice Freshwater Cryoconite Cryconite 65.38 -38.53 216071653 396686 92 15 162 17 SRX2579846 0.0 Metagenome 3300011933 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human subgingival plaque microbial communities from Los Angeles, CA, USA - S03-03-R University of California, Los Angeles 3300011933 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human subgingival plaque 34.0722 -118.4441 105136808 161429 90 2 135 2 SRX858925 0.0 Metagenome 3300026869 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 53 (SPAdes) DOE Joint Genome Institute (JGI) 3300026869 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 65933119 151015 62 0 125 1 SRX4340976 Unrestricted 0.0 Metagenome 3300000597 *Microbiome Draft Forest soil microbial communities from Amazon Forest, Brazil Forest soil microbial communities from Amazon forest - 2010 replicate II A1 DOE Joint Genome Institute (JGI) 3300000597 Metagenome Analysis released based on JGI ITS Yes Yes jorge@uta.edu, jmrodrigues@ucdavis.edu Jorge Rodrigues, Jorge L. Rodrigues Yes 30083144 Environmental Terrestrial Tropical forest Soil Bulk soil Forest soil -10.171667 -62.7875 321952212 768309 316 2 558 4 Unrestricted 0.0 Metagenome 7000000051 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764487809 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000051 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 12317038 27475 0 0 0 0 0.0 Metagenome 3300036421 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T100 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036421 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 102967024 157448 44 3 55 2 SRX4415316, SRX7705691 Unrestricted 0.0 Metagenome 3300048893 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Soil microbial communities from greenhouse in W.K. Kellogg Biological Station, Michigan, USA - CIR soil_3a N15 DOE Joint Genome Institute (JGI) 3300048893 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Environmental Terrestrial Unclassified Soil Unclassified Soil 42.40581 -85.40228 1647146367 2724301 600 24 940 45 Unrestricted 13.65 Metagenome 3300026887 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 49 (SPAdes) DOE Joint Genome Institute (JGI) 3300026887 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 65261237 150920 64 2 117 5 SRX4340971 Unrestricted 0.0 Metagenome 3300013331 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100197 University of Pennsylvania 3300013331 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 10861511 21554 4 0 6 0 SRX756702 0.0 Metagenome 3300002479 *Microbiome Permanent Draft Fumarolic subsurface microbial communities from Tramway Ridge at Mt. Erebus, Antarctica for carbon cycling studies in geothermal environments Geothermal fumarole subsurface microbial communities from Mt. Erebus, Antarctica - 1A2C DOE Joint Genome Institute (JGI) 3300002479 Metagenome Analysis revert back to private per Christa Yes Yes twoyke@lbl.gov, craig.herbold@microbial-ecology.net Tanja Woyke, Craig Herbold No Environmental Terrestrial Fumaroles Volcanic Unclassified Fumarolic subsurface -77.5182 167.1113 4099718 6684 4 0 6 0 SRX2555349 Unrestricted 0.0 Metagenome 3300043692 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - Rondonia_Pasture_1_A0m DOE Joint Genome Institute (JGI) 3300043692 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.163 -62.836 543583364 1535713 579 10 1003 14 Unrestricted 7.45 Metagenome 3300039208 *Microbiome Permanent Draft Aquariaum water viral communities from Chicago, USA Aquariaum water viral communities from Chicago, USA - Wild Reef - WR1 Michigan State University 3300039208 Metagenome Analysis Yes Yes No Environmental Aquatic Unclassified Aquaculture Unclassified Aquarium water 41.87 -87.61 55555179 131752 128 6 397 5 0.0 Metagenome 3300001774 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_QV11A DOE Joint Genome Institute (JGI) 3300001774 Metagenome Analysis Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 18218343 26131 15 0 21 0 SRX3321670 Unrestricted 0.0 Metagenome 3300046407 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA094-TCU DOE Joint Genome Institute (JGI) 3300046407 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6876 -83.5019 294984793 839450 316 27 539 54 Unrestricted 7.71 Metagenome 3300046688 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 soil DOE Joint Genome Institute (JGI) 3300046688 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.588254 -123.193143 6.55 493786407 907661 220 11 402 17 Unrestricted 18.76 Metagenome 3300037756 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVT2_Jul25_67_v DOE Joint Genome Institute (JGI) 3300037756 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2008355433 3253221 738 5 1205 9 SRX9162574 Unrestricted 15.42 Metagenome 3300002541 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-4-D DOE Joint Genome Institute (JGI) 3300002541 Metagenome Analysis Yes Yes jsvander@ucdavis.edu Jean VanderGheynst Yes 27981239 Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 126842170 203522 157 10 232 21 SRX2557143 Unrestricted 0.0 Metagenome 3300017535 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS377 with 3.0UM filter JGI facility at Oak Ridge National Laboratory 3300017535 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 14195041 31646 16 2 27 1 0.0 Metagenome 3300056652 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.20C.9 SIP fraction DOE Joint Genome Institute (JGI) 3300056652 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 138718755 248871 44 7 81 12 Unrestricted 13.27 Metagenome 3300006566 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159268001 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006566 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 190086341 257962 116 0 157 0 0.0 Metagenome 3300021052 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_8mM DOE Joint Genome Institute (JGI) 3300021052 Metagenome Analysis spades v. 3.10.1 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 99689292 99021 20 1 28 2 SRX4010643 Unrestricted 52.76 Metagenome 3300015325 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12JUL2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015325 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 191569589 332041 10 116 12 242 SRX3923448 Unrestricted 7.68 Metagenome 3300047121 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Aug2015-rd0216 (version 2) DOE Joint Genome Institute (JGI) 3300047121 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1008564066 1458749 416 90 558 133 Unrestricted 0.0 Metagenome 3300036112 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C1-3C DOE Joint Genome Institute (JGI) 3300036112 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 141590517 428848 284 6 494 18 SRX8816753 Unrestricted 4.94 Metagenome 3300001090 *Microbiome Permanent Draft Osedax symbiont microbial communities from Monterey Canyon, California, USA Osedax symbiont type-II 3300001090 Metagenome Analysis CLC genomics released by JGI data releasing policy No Yes sgoffredi@gmail.com Shana Goffredi No Host-associated Annelida Trophosome Intracellular endosymbionts Unclassified Osedax symbiont 36.708 -122.106 4517768 4530 1 0 0 0 0.0 Metagenome 3300043370 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 294-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043370 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9788 -107.0357 245700980 761184 424 23 806 28 Unrestricted 6.65 Metagenome 3300036828 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in New South Wales, Australia - Pi_4 DOE Joint Genome Institute (JGI) 3300036828 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil -33.6 150.0 2143252729 3460858 368 43 581 59 SRX8385140 Unrestricted 16.49 Metagenome 3300020046 *Microbiome Permanent Draft Freshwater viral communities from Chicago Sanitary Ship Canal, USA Freshwater viral communities from Harlem, Illinois, USA - 1 University of Illinois-Urbana Champaign 3300020046 Metagenome Analysis SPADES v3.10.1 released by JGI data releasing policy No Yes wtliu@illinois.edu Wen-Tso Liu No Environmental Aquatic River Freshwater Unclassified Freshwater 41.8 -87.8025 448984128 1047519 1 0 4 0 0.0 Metagenome 7000000176 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764649650 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000176 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 71631052 131008 0 0 0 0 0.0 Metagenome 3300013280 *Microbiome Permanent Draft Activated sludge bacterial and viral communities from EBPR bioreactors in Australia Activated sludge bacterial and viral communities from EBPR bioreactors in Queensland, Australia - SBR4-V90903 California Institute of Technology 3300013280 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Activated sludge -27.49999 153.01209 33646596 88622 16 1 21 4 SRX1077119 0.0 Metagenome 3300018472 *Microbiome Permanent Draft Bovine feces microbial communities from beef and dairy calves in Davis, CA, USA Bovine feces microbial communities from beef calf in Davis, CA, USA - DMJL001O re-assembly QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018472 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes jxnliu@ucdavis.edu Jinxin Liu No Host-associated Mammals Large intestine Digestive system Fecal feces 38.5449 -121.7405 154799258 243172 140 1 276 0 0.0 Metagenome 3300070428 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Mountain Lake Biological Station, Virginia, USA - MLBS_007-O-20180612-COMP-DNA1 3300070428 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 28271760 85570 58 17 140 30 0.0 Metagenome 3300003814 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Jul09 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003814 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 84872464 199502 113 17 190 18 SRX2565945 Unrestricted 0.0 Metagenome 3300042431 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jun2015-rr0489 DOE Joint Genome Institute (JGI) 3300042431 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 406348698 652492 172 20 229 26 Unrestricted 17.18 Metagenome 3300011847 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00297 Weill Cornell Medical College 3300011847 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.69 -73.99 37342767 67360 27 0 41 0 SRX822270 0.0 Metagenome 3300045683 *Microbiome Draft Lake microbial communities from Canada Lake sediment microbial communities from the Boreal Plains ecozone, Canada - Lake 09-380 Genome Quebec 3300045683 Metagenome Analysis MEGAHIT v1.0.6 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Lake Sediment 55.061393 -114.016717 206840767 286779 101 15 170 21 0.0 Metagenome 3300011161 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00217 Weill Cornell Medical College 3300011161 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.79 -73.97 17962269 33250 14 0 15 0 SRX822196 0.0 Metagenome 3300007162 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Fresh water microbial communities from Ohio, USA - Utica-2 Time Series HT 2014_7_11 DOE Joint Genome Institute (JGI) 3300007162 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Water tank Freshwater Unclassified Fresh water 40.178 -81.073 5.8 517486149 1364976 462 112 881 197 SRX2925263 Unrestricted 0.0 Metagenome 3300055525 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.3W.9 SIP fraction DOE Joint Genome Institute (JGI) 3300055525 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 339652041 610537 117 2 155 2 Unrestricted 16.82 Metagenome 7000000622 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 159753524 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000622 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 59983018 102302 0 0 0 0 0.0 Metagenome 3300003267 *Microbiome Permanent Draft Sugarcane root and bulk soil microbial communities from Ayr, Burdekin, Queensland Australia Sugarcane bulk soil Sample L1 3300003267 Metagenome Analysis CLC genomics workbench 7 released by JGI data releasing policy No Yes yun.yeoh@uqconnect.edu.au Yun Kit Yeoh No Environmental Terrestrial Unclassified Soil Agricultural land Sugarcane root and bulk soil -19.733298 147.17873 425215856 618541 44 29 55 37 0.0 Metagenome 3300029969 *Microbiome Permanent Draft Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil - Pedrinho_C4 Reanalysis Center for Advanced Technologies in Genomics, Sao Paulo University 3300029969 Metagenome Analysis metaSPAdes v. 3.12.0 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 61553404 121652 107 2 211 2 0.0 Metagenome 3300010394 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Florida Keys, Florida, USA - Orbicella T D metagenome DOE Joint Genome Institute (JGI) 3300010394 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes momedinamunoz@gmail.com Medina Medina No Host-associated Invertebrates Coral Cnidaria Unclassified Coral 24.6669 -81.5441 422897341 711358 108 5254 101 9823 SRX2525665 Unrestricted 0.0 Metagenome 3300037516 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2018-rr0136 DOE Joint Genome Institute (JGI) 3300037516 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 871105045 1345923 311 88 381 131 SRX9139775 Unrestricted 19.21 Metagenome 3300040483 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Mid-Atlantic, VA, USA - SCBI_003-M-20170717-COMP-DNA1 Battelle Memorial Institute 3300040483 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89292 -78.1395 3905141 11933 30 0 51 2 0.0 Metagenome 3300002913 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic Ocean affecting the dissolved organic carbon pool Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LV DOE Joint Genome Institute (JGI) 3300002913 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -37.9831 -44.9892 406071638 905612 545 49 880 63 SRX2566721 Unrestricted 0.0 Metagenome 3300028466 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_26JUN2017_LD1 DOE Joint Genome Institute (JGI) 3300028466 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 36249791 69989 4 33 8 43 SRX5345800 Unrestricted 26.62 Metagenome 3300014547 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS65_18 University of Hohenheim 3300014547 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 96764056 151298 63 0 98 0 0.0 Metagenome 3300026997 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 66 (SPAdes) DOE Joint Genome Institute (JGI) 3300026997 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 86121766 210761 90 1 178 4 SRX4341315 Unrestricted 0.0 Metagenome 3300029049 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 38_M Beijing Genomics Institute (BGI) 3300029049 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 142930351 183514 112 0 157 0 ERX491130 0.0 Metagenome 3300005781 *Microbiome Permanent Draft Carbonate cave metagenome Microbial communities from carbonate cave `Grotte des Collemboles,? Comblain-au-Pont, Belgium Centre de Recherche Public Gabriel Lippmann 3300005781 Metagenome Analysis Unassembled released per JGI data release policy No Yes srigali@ulg.ac.be S?bastien Rigali, Sebastien Rigali No Environmental Terrestrial Unclassified Deep subsurface Unclassified speleothem 50.48 5.58 0 0 0 0 0 0 0.0 Metagenome 3300009503 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring microbial communities from Yellowstone National Park - Yellowstone National Park OP-RAMG-02 (version 2) DOE Joint Genome Institute (JGI) 3300009503 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes elkinsjg@ornl.gov, elkinsjg@ornl.gov; rmkelly@ncsu.edu James G Elkins, James Elkins; Robert Kelly Yes 29475869 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.61 -110.44 1771797201 3301246 1791 42 2527 65 SRX3196666 Unrestricted 0.0 Metagenome 3300014044 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00865 Weill Cornell Medical College 3300014044 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.69 -73.83 13493897 21671 14 0 22 0 SRX822831 0.0 Metagenome 3300028828 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202 DOE Joint Genome Institute (JGI) 3300028828 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92044255 -106.94881797 2285955167 5542264 824 21 1481 30 SRX5355405 Unrestricted 11.02 Metagenome 3300070223 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_010-O-20170802-COMP-DNA1 3300070223 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 41378748 113728 59 1 119 2 0.0 Metagenome 3300050181 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_6A1_100218_2020 DOE Joint Genome Institute (JGI) 3300050181 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 779428573 1264699 352 144 477 218 Unrestricted 19.85 Metagenome 3300056785 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MB24 DOE Joint Genome Institute (JGI) 3300056785 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 10336762 26842 49 3 94 2 Restricted 35.31 Metagenome 3300037364 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 20-24 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037364 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 909268082 1887660 296 39 560 52 SRX4415326, SRX8128003 Unrestricted 0.0 Metagenome 3300027724 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB5-Kit (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027724 Metagenome Analysis spades v. 3.11.1 Yes Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 611693235 1295894 560 29 917 36 SRX2838871 Unrestricted 0.0 Metagenome 3300012681 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ272 (21.06) DOE Joint Genome Institute (JGI) 3300012681 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.049 163.698 1290666899 2801457 838 6 1378 11 SRX3369435 Unrestricted 0.0 Metagenome 3300027351 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F10 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027351 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 48200972 57492 53 0 51 0 SRX3195103 Unrestricted 0.0 Metagenome 3300045207 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_4_A DOE Joint Genome Institute (JGI) 3300045207 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 189188829 222521 103 1 129 2 Unrestricted 103.57 Metagenome 3300006521 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159753524 replicate 2 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006521 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 22398228 43046 18 1 26 0 0.0 Metagenome 3300014964 *Microbiome Permanent Draft Mouse gut microbial communities from Hong Kong to study the effect of probiotic LGG Mouse gut microbial communities from Hong Kong to study the effect of probiotic LGG - Control W8 University of Hong Kong 3300014964 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 22.3356 114.1826 440514803 861741 347 6 594 11 SRX1153579 0.0 Metagenome 3300070903 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_070-O-20200916-COMP-DNA1 3300070903 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 81090265 182109 38 10 58 17 0.0 Metagenome 3300030497 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - Mg.Sf.rz (v2) (version 3) DOE Joint Genome Institute (JGI) 3300030497 Metagenome Analysis spades v. 3.12.0 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.7658 -100.163 426598694 873484 696 51 941 79 SRX2124705 Unrestricted 0.0 Metagenome 3300054980 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_1-s30 day 28 DOE Joint Genome Institute (JGI) 3300054980 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 440845147 595581 77 77 139 90 Unrestricted 45.29 Metagenome 3300017502 *Microbiome Permanent Draft Bras del Port Febrero 2015 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CM2 Febrary 2015 University of Valencia 3300017502 Metagenome Analysis idba.1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Non-marine hypersaline water 38.1922 -0.5918 36572989 125006 1 0 0 0 0.0 Metagenome 3300045927 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P26SSC2_191112_f DOE Joint Genome Institute (JGI) 3300045927 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 846521720 1275407 227 1 392 2 SRX20650060 Unrestricted 12.5 Metagenome 3300047166 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Vasterbotten County, Sweden - Sphagnum balticum 11C_BA_DE DOE Joint Genome Institute (JGI) 3300047166 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.183 19.5578 1311896053 2362843 452 90 712 156 SRX14752412 Unrestricted 7.96 Metagenome 3300029623 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36049 Beijing Genomics Institute (BGI) 3300029623 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 307837722 408583 263 1 379 1 0.0 Metagenome 3300001399 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 210-3 shallow-072012 DOE Joint Genome Institute (JGI) 3300001399 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 12281009 40254 55 5 89 7 SRX1987459 Unrestricted 0.0 Metagenome 3300032579 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18021 DOE Joint Genome Institute (JGI) 3300032579 Metagenome Analysis spades v. 3.13.0 Yes Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.0411 -89.6861 639740748 1176850 426 52 623 77 SRX7891550 Unrestricted 27.09 Metagenome 3300066305 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONZ_043-M-20170711-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066305 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.10077 -96.56309 41870487 125795 167 10 294 15 0.0 Metagenome 3300050252 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_3 DOE Joint Genome Institute (JGI) 3300050252 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.598 161.007 638846379 1132067 156 52 247 71 SRX18235859 Restricted 19.41 Metagenome 3300035697 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 2_4.5_N_12_2 DOE Joint Genome Institute (JGI) 3300035697 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1866 -2.2146 1899606864 4261572 426 0 679 2 SRX8232513 Unrestricted 9.14 Metagenome 3300070866 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_008-M-20180723-COMP-DNA1 3300070866 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 89626984 244064 148 15 264 15 0.0 Metagenome 3300001501 *Microbiome Permanent Draft Human axilla skin microbial communities from the University of Liverpool, UK Human axilla skin microbial communities from the University of Liverpool, UK - AX06 3300001501 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Host-associated Mammals: Human Skin Integumentary system Axilla/Armpit Human axilla skin 53.3484 -3.009 10030474 24902 11 5 19 4 0.0 Metagenome 3300011390 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ016 MetaG DOE Joint Genome Institute (JGI) 3300011390 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.7096 -74.6635 96660191 166198 29 9 66 15 SRX3539451 Unrestricted 0.0 Metagenome 3300038997 *Microbiome Permanent Draft Cryoconite microbial communities from the surface of glaciers from various locations Cryoconite microbial communities from the surface of Forni Glacier, Lombardia, Italy - ERS1030528 University of Milan-Bicocca 3300038997 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Ice Freshwater Cryoconite cryoconite 46.39825 10.58561111 67309673 103362 37 4 48 4 ERX1273394 0.0 Metagenome 3300036466 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Shale gas microbial communities from Fort St. John, British Columbia, Canada - PROGRESS PAD DOE Joint Genome Institute (JGI) 3300036466 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back shale gas 57.0 -122.0 114843968 206204 127 6 191 8 SRX8356933 Unrestricted 103.14 Metagenome 3300038601 *Microbiome Permanent Draft Freshwater microbial communities from various watersheds in Southwestern British Columbia, Canada Freshwater microbial communities from Southwestern British Columbia, Canada - PDS_019 University of British Columbia 3300038601 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 49.0 -123.0 28839267 60755 50 0 80 1 0.0 Metagenome 3300010378 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 2 OAHU.JWI-91 metaG DOE Joint Genome Institute (JGI) 3300010378 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms 21.3935 -157.7156 770969372 1110215 3 9 7 14 SRX2525634 Unrestricted 0.0 Metagenome 3300035221 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2018_2000m DOE Joint Genome Institute (JGI) 3300035221 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 50.0 -145.0 511796335 1229800 401 63 619 77 SRX8188618 Unrestricted 15.63 Metagenome 3300040288 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 091_R1_022417 University of Maryland 3300040288 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.69458333 27.09366667 6470193 17279 34 0 45 0 0.0 Metagenome 3300004687 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Jul08 (version 2) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300004687 Metagenome Analysis MEGAHIT v0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 265350286 701884 212 112 378 250 SRX2565289 Unrestricted 0.0 Metagenome 2124908023 *Microbiome Draft Switchgrass rhizosphere bulk soil microbial community from Michigan, US Bulk soil microbial communities from switchgrass field near East Lansing, Michigan, USA - East Lansing bulk soil v1 DOE Joint Genome Institute (JGI) 2124908023 Metagenome Analysis Newbler released based on JGI ITS No Yes tiedjej@msu.edu James Tiedje No Environmental Terrestrial Agricultural land Soil Bulk soil Bulk soil 42.704677 -84.468818 28451840 44286 2 1 6 0 Unrestricted 0.0 Metagenome 3300028421 *Microbiome Permanent Draft Bras del Port September 2017 Non-marine hypersaline water viral communities from Bras del Port saltern ponds, Alicante, Spain - CCAB_September 2016 University of Alicante 3300028421 Metagenome Analysis IDBA v. 1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Mar?a Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline water 38.1904 -0.5948 15611690 49887 1 0 0 0 0.0 Metagenome 3300037580 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR08_30 DOE Joint Genome Institute (JGI) 3300037580 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Crustal Fluids crustal fluids 47.7534 -127.7638 585322136 1454644 527 83 891 133 SRX9096347 Unrestricted 18.22 Metagenome 3300011672 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway plastic -P00871 Weill Cornell Medical College 3300011672 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Plastic surface city subway plastic 40.69 -73.86 7714716 11280 9 0 16 0 SRX822837 0.0 Metagenome 3300012807 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from Cellana algal ponds in Kailua-Kona, Hawaii, USA - Cellana AP2-4-25 metagenome pilot DOE Joint Genome Institute (JGI) 3300012807 Metagenome Analysis MEGAHIT v. 1.0.6 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Engineered Artificial ecosystem Algae raceway pond Aquaculture Unclassified phycosphere 19.7341 -156.0529 61355261 89628 38 4 49 2 SRX7204053 Unrestricted 0.0 Metagenome 3300019931 *Microbiome Permanent Draft Arctic soil viral communities from Stordalen Mire, Sweden Arctic soil viral communities from Stordalen Mire, Sweden - P-N2 DOE Joint Genome Institute (JGI) 3300019931 Metagenome Analysis spades v. SPAdes version: 3.10.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Terrestrial Palsa Soil Mineral soil core arctic soil 68.3526 19.0147 5297874 11872 5 7 14 12 SRX5627514 Restricted 0.0 Metagenome 3300049674 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F11_A_3_drought DOE Joint Genome Institute (JGI) 3300049674 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 145112150 343879 333 28 680 39 Unrestricted 10.62 Metagenome 3300043079 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver small intestine microbial communities from Maple Ridge, British Columbia, Canada - Beaver2Small.Intestine1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043079 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Small intestine Digestive system Unclassified small intestine 49.18 -122.54 319882756 514880 52 7 80 14 SRX8344683 Unrestricted 13.3 Metagenome 3300023715 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet fungal communities from Santa Barbara, California, USA - diluted pellet 3 Spades (v3) (version 3) DOE Joint Genome Institute (JGI) 3300023715 Metagenome Analysis spades v. 3.11.1-check No Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4204 -119.6671 564286104 1458578 775 6 1263 13 SRX3964278 Unrestricted 0.0 Metagenome 3300020201 *Microbiome Permanent Draft Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP9.P1 DOE Joint Genome Institute (JGI) 3300020201 Metagenome Analysis spades v. 3.10.1 Yes Yes dysumner@ucdavis.edu Dawn Sumner No Environmental Aquatic Lake Freshwater Microbial mats freshwater microbial mat -77.5281 161.59 1208608394 2064430 701 66 968 100 SRX3539181 Unrestricted 26.18 Metagenome 3300029762 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37193R1 Beijing Genomics Institute (BGI) 3300029762 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 128884730 155639 113 0 154 0 0.0 Metagenome 3300029340 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 025_10_28_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029340 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 227305269 338442 315 0 386 1 0.0 Metagenome 3300039322 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 585_M Beijing Genomics Institute (BGI) 3300039322 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 128780163 181183 84 0 169 0 ERX491238 0.0 Metagenome 3300000094 *Microbiome Draft Wetland microbial communities from Twitchell Island in the Sacramento Delta Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Tule DOE Joint Genome Institute (JGI) 3300000094 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes stringe@lbl.gov, sgtringe@lbl.gov Susannah Tringe Yes 25991679 Environmental Aquatic Wetlands Marine Sediment Wetland 38.107057 -121.647578 129333279 362721 403 0 754 0 Unrestricted 0.0 Metagenome 3300034142 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 55SNC DOE Joint Genome Institute (JGI) 3300034142 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological biocrust 34.3778 -117.6098 226226483 549771 447 37 812 55 SRX7621473 Unrestricted 8.36 Metagenome 3300070675 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_001-M-20190830-COMP-DNA1 3300070675 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 38167816 113508 60 9 168 13 0.0 Metagenome 3300003143 *Microbiome Permanent Draft Marine sediment microbial communities from deep subseafloor Marine sediment microbial communities from deep subseafloor - Sample from 48.5 mbsf Japan Agency for Marine-Earth Science and Technology 3300003143 Metagenome Analysis Made public because these are downloaded from Genbank No Yes takamih@jamstec.go.jp Hideto Takami Yes 24624126 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Marine sediment 41.1773 142.2013 36847613 74905 17 0 38 0 0.0 Metagenome 3300021139 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion v3 DOE Joint Genome Institute (JGI) 3300021139 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.0412 -89.6864 254134288 540239 181 33 316 56 Unrestricted 0.0 Metagenome 3300000770 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 23JUN2009 hypolimnion DOE Joint Genome Institute (JGI) 3300000770 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu, tmcmahon@engr.wisc.edu; rrmalmstrom@lbl.gov Katherine McMahon, Katherine McMahon; Rex Malmstrom Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300014660 *Microbiome Permanent Draft Human skin microbial communities from psoriasis patients in Trento, Italy Human skin microbial communities from psoriasis patients in Trento, Italy - SKCT13_b2_46 University of Trento 3300014660 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Skin surface Human skin 46.0667 11.1167 2792318 3571 4 1 8 4 SRX1015763 0.0 Metagenome 3300013216 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100568 University of Pennsylvania 3300013216 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 36180487 91879 69 13 138 25 SRX756186 0.0 Metagenome 3300069431 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountain National Park, Central Plains, CO, USA - RMNP_013-O-20170807-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069431 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.27591 -105.54592 136726734 349031 119 5 239 10 0.0 Metagenome 3300001798 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_8Ca DOE Joint Genome Institute (JGI) 3300001798 Metagenome Analysis Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 108343839 231450 128 16 212 19 SRX3322250 Unrestricted 0.0 Metagenome 3300011126 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02 Toyama Prefectural University 3300011126 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Sediment marine 37.035 137.41472 89248274 244568 33 2 51 9 0.0 Metagenome 3300039403 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site1_salt_MII_4 DOE Joint Genome Institute (JGI) 3300039403 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Tidal flats microbial mat 20.7609 58.6478 48378415 138578 53 6 88 13 SRX9601888, SRX9601887 Unrestricted 0.0 Metagenome 3300037478 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVT2_Sep_76_v DOE Joint Genome Institute (JGI) 3300037478 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 1727361452 2703880 531 8 819 9 SRX9163101 Unrestricted 18.21 Metagenome 3300069352 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_009-M-20170627-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069352 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 16760836 47215 61 4 105 6 0.0 Metagenome 3300000335 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5 v3 (version 3) DOE Joint Genome Institute (JGI) 3300000335 Metagenome Analysis Velvet released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 7377467 23748 424 273 5417 1171 Unrestricted 0.0 Metagenome 3300044627 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME05Aug2014-rr0877 DOE Joint Genome Institute (JGI) 3300044627 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1204208129 1856647 482 96 653 130 Unrestricted 15.33 Metagenome 3300012662 *Microbiome Permanent Draft Baboon gut microbial communities from fecal samples in Kenya Baboon gut microbial communities from fecal samples in Kenya - F10 Duke University 3300012662 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Baboon gut 2.717 37.1 145604265 284219 112 0 225 2 SRX834637 0.0 Metagenome 3300045766 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - P1-R1-A DOE Joint Genome Institute (JGI) 3300045766 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.355 19.0438 587172498 1154717 228 28 391 45 Unrestricted 8.62 Metagenome 3300050162 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D15_SEK1_4_to_SEK1 DOE Joint Genome Institute (JGI) 3300050162 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.244 581947918 954518 308 82 500 110 Unrestricted 20.99 Metagenome 3300018044 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10 DOE Joint Genome Institute (JGI) 3300018044 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 1388096435 2777764 767 38 1268 79 SRX3960721 Unrestricted 6.5 Metagenome 3300032140 *Microbiome Permanent Draft Deep subsurface sediment microbial communities from Tonga Trench, Pacific Ocean Deep subsurface sediment microbial communities from Tonga Trench, Pacific Ocean - 36_48 re-sequenced with NextSeq Marine Biological Laboratory 3300032140 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Sediment Geologic Unclassified Deep subsurface sediment -16.64175 -172.200017 4532906 13051 15 7 30 22 SRX2056174, SRX2056173 0.0 Metagenome 3300071005 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_005-M-20190617-COMP-DNA1 3300071005 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 249754 863 7 0 8 0 0.0 Metagenome 3300043702 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - Rondonia_Pasture_1_C100m DOE Joint Genome Institute (JGI) 3300043702 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.163 -62.836 1020852487 2719283 726 11 1418 17 Unrestricted 7.46 Metagenome 3300025124 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-11 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025124 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 635451030 1145374 639 29 964 37 SRX3198182 Unrestricted 0.0 Metagenome 3300026508 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A DOE Joint Genome Institute (JGI) 3300026508 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 264183395 626480 208 24 369 41 SRX4802467 Unrestricted 10.31 Metagenome 3300005897 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_103 DOE Joint Genome Institute (JGI) 3300005897 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 326257938 1106272 474 8 875 20 SRX2564680, SRX2581039 Unrestricted 0.0 Metagenome 3300014713 *Microbiome Permanent Draft Synthetic microbial community for library methods comparison from University of Liverpool, United Kingdom Synthetic microbial communities for library methods comparison from University of Liverpool, United Kingdom - Mg75 University of Liverpool 3300014713 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 53.405936 -2.9677609 72665826 116653 41 0 50 0 ERX1325924 0.0 Metagenome 3300028396 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 55D DOE Joint Genome Institute (JGI) 3300028396 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 315053214 674306 219 38 306 61 SRX5171877 Unrestricted 21.4 Metagenome 3300010002 *Microbiome Finished Microbiology of confined controlled built environments Public houses floor intact (viable) microbial communities from the Eekholt wildlife park, Eekholt, Germany - public houses, PMA treated samples, P_plus Eurofins MWG Operon 3300010002 Metagenome Analysis Ray Meta released per JGI data release policy No Yes alexander.mahnert@gmail.com Alexander Mahnert No Engineered Built environment Unclassified House Unclassified built environment 53.94803 10.026079 26026505 29510 8 4 4 3 0.0 Metagenome 3300049708 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D14_A_3_control DOE Joint Genome Institute (JGI) 3300049708 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 269230558 629532 417 38 858 50 Unrestricted 13.02 Metagenome 3300048105 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_110223.NP1 DOE Joint Genome Institute (JGI) 3300048105 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 576463004 1300234 399 50 565 79 Unrestricted 16.79 Metagenome 3300033986 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from deep shales in Oklahoma, United States - M2-7-3 DOE Joint Genome Institute (JGI) 3300033986 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back fracking water 35.784 -98.26 166399291 245914 184 0 223 0 SRX7525008 Unrestricted 242.71 Metagenome 3300022411 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1BM1 JM70 AGRF 3300022411 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 44991701 85651 40 0 68 1 0.0 Metagenome 3300030523 *Microbiome Permanent Draft Rock endolithic microbial communities from Victoria Land, Antarctica Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone DOE Joint Genome Institute (JGI) 3300030523 Metagenome Analysis spades v. 3.11.1 Yes Yes selbmann@unitus.it Laura Selbmann Yes 32139564 Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock -75.9 159.8 644265684 941331 141 25 167 37 SRX5225358 Unrestricted 41.55 Metagenome 3300022676 *Microbiome Permanent Draft Carpinteria Salt Marsh Metagenomes 2014 to 2017 Sediment microbial communities from hypersaline pond in Carpinteria, CA, United States - Summer B University of California, Irvine 3300022676 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Aquatic Intertidal zone Marine Sediment Sediment 34.401 -119.534 4946415 6653 2 0 9 0 0.0 Metagenome 3300034997 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - C8-7 Autonomous University of Barcelona 3300034997 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 96615613 395174 1011 2 1838 1 0.0 Metagenome 3300050480 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - W2NW8 DOE Joint Genome Institute (JGI) 3300050480 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 54896548 108590 144 43 269 57 Unrestricted 22.73 Metagenome 3300031587 *Microbiome Permanent Draft Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP3 DOE Joint Genome Institute (JGI) 3300031587 Metagenome Analysis spades v. 3.12.0 Yes Yes rlsimister@gmail.com Rachel Simister No Environmental Aquatic Lake Freshwater Sediment sediment -2.7726 121.4938 636117364 1265140 534 1 1065 3 SRX6422662 Unrestricted 14.34 Metagenome 3300048059 *Microbiome Permanent Draft Marine and freshwater sediment microbial communities from various locations Marine sediment microbial communities from Mediterranean Sea - Mediterranean_Core_1_4-8_cm DOE Joint Genome Institute (JGI) 3300048059 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes smtechtm@mtu.edu Stephen Techtmann No Environmental Aquatic Sediment Marine Unclassified Marine sediment 31.971 30.142 434946304 1333441 567 4 954 5 Unrestricted 6.4 Metagenome 3300026791 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Kansas, USA that are Nitrogen fertilized - NN591 (SPAdes) DOE Joint Genome Institute (JGI) 3300026791 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.070856 -96.582821 28550548 85434 76 5 142 3 SRX3311854 Unrestricted 0.0 Metagenome 3300006475 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2 of subject 158883629 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006475 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 21424045 50894 31 0 50 0 0.0 Metagenome 3300005987 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 9/18/14 B DNA DOE Joint Genome Institute (JGI) 3300005987 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ebyoung@uwm.edu Erica Young, Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 1687154259 4339798 1108 313 1862 576 SRX2748447 Unrestricted 0.0 Metagenome 3300013573 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - seawater enrichment SCG49 University of British Columbia 3300013573 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 2764261 5233 2 0 2 0 SRX143158 0.0 Metagenome 3300030104 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001443 CEA Genoscope 3300030104 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -12.9723 -96.0122 218211545 421119 8 0 12 0 0.0 Metagenome 3300020195 *Microbiome Permanent Draft Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.P2.IB DOE Joint Genome Institute (JGI) 3300020195 Metagenome Analysis spades v. 3.10.1 Yes Yes dysumner@ucdavis.edu Dawn Sumner No Environmental Aquatic Lake Freshwater Microbial mats freshwater microbial mat -77.5281 161.59 1245844907 2138642 668 20 1029 23 SRX3539180 Unrestricted 21.31 Metagenome 7000000686 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765560005 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000686 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 57132946 106559 0 0 0 0 0.0 Metagenome 3300037871 *Microbiome Permanent Draft Seawater and sediment microbial communities from various locations Seawater microbial communities from eastern tropical North Pacific Ocean - AMALJGI-DNA-15 DOE Joint Genome Institute (JGI) 3300037871 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bbw@princeton.edu Bess Ward No Environmental Aquatic Oceanic Marine Unclassified seawater 18.0 -102.0 492522621 1015960 353 21 713 24 SRX9400595 Unrestricted 14.38 Metagenome 3300014553 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS58_6 University of Hohenheim 3300014553 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 106917269 166450 75 2 129 2 0.0 Metagenome 3300045173 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_3_F DOE Joint Genome Institute (JGI) 3300045173 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 164566990 197457 91 1 121 2 Unrestricted 150.06 Metagenome 3300002356 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 30AUG2010 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002356 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 17557198 47630 60 12 123 27 SRX1989013 Unrestricted 0.0 Metagenome 3300008408 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763982056 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008408 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 109471514 144524 107 1 136 3 0.0 Metagenome 3300045085 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 004-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300045085 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9574 -106.9861 620847711 1408127 397 18 664 37 Unrestricted 7.88 Metagenome 3300049309 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA19 DOE Joint Genome Institute (JGI) 3300049309 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 293227531 731838 345 5 609 10 Unrestricted 7.5 Metagenome 3300042617 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Nasutitermes lujae from Ebogo II, Mbalmayo, Cameroon - Nl494 Eurofins MWG Operon 3300042617 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 3.381958 11.463214 369097208 477260 139 3 173 7 0.0 Metagenome 3300025503 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025503 Metagenome Analysis spades v. 3.11.1 Yes Yes binskeep@montana.edu; jim.fredrickson@pnnl.gov William P. Inskeep; Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hypersaline mat 44.376 -110.69 338487082 525839 167 3 219 4 SRX3316449 Unrestricted 0.0 Metagenome 3300000228 *Microbiome Draft Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- PC08_66 DOE Joint Genome Institute (JGI) 3300000228 Metagenome Analysis released based on JGI ITS Yes Yes jlm80@psu.edu Jennifer Macalady Yes 25620962 Environmental Aquatic Groundwater Freshwater Cave water Groundwater 43.383333 12.95 448373019 974097 422 39 766 75 Unrestricted 0.0 Metagenome 3300030080 *Microbiome Permanent Draft Human fecal microbial communities from healthy and liver cirrhosis patients in Hangzhou, China Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-31_Run3 Zhejiang University 3300030080 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 30.0 120.0 4304652 7985 9 0 17 0 0.0 Metagenome 3300049591 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 DOE Joint Genome Institute (JGI) 3300049591 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.407926 -82.180036 1633793099 2726903 554 6 1010 9 Unrestricted 13.82 Metagenome 3300029781 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Sweden Biosolids microbial communities from sewage treatment plant in Sweden - SWESTP11 - Uppsala-digested 112 University of Gothenburg 3300029781 Metagenome Analysis released Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified biosolids 59.844519 17.659844 166814154 298673 155 1 268 0 0.0 Metagenome 3300008136 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764811490 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008136 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 199336242 248812 150 0 150 0 0.0 Metagenome 3300039310 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P8_D5 DOE Joint Genome Institute (JGI) 3300039310 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 728720842 986358 185 9 272 11 SRX9635443 Unrestricted 29.04 Metagenome 3300031569 *Microbiome Permanent Draft Extreme environments viral communities from various locations Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 1.2 DOE Joint Genome Institute (JGI) 3300031569 Metagenome Analysis spades v. 3.12.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Coastal Marine Unclassified sackhole brine 71.3731 -156.5049 2881961521 5923367 574 519 701 677 SRX5650219 Unrestricted 19.42 Metagenome 3300011853 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00342 Weill Cornell Medical College 3300011853 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -74.0 42364250 68966 19 0 48 0 SRX822315 0.0 Metagenome 3300022865 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #728 DOE Joint Genome Institute (JGI) 3300022865 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 159691784 285440 99 16 164 25 SRX4397137 Unrestricted 17.59 Metagenome 3300000908 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 DOE Joint Genome Institute (JGI) 3300000908 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 23944016 77929 150 28 255 38 SRX1985907, SRX1985908 Unrestricted 0.0 Metagenome 3300027432 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027432 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 241021136 567816 262 22 485 34 SRX3312068 Unrestricted 0.0 Metagenome 3300005969 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_Bottom_ad_4513_LV_A DOE Joint Genome Institute (JGI) 3300005969 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 670384334 1766555 678 51 1102 81 SRX2775742 Unrestricted 0.0 Metagenome 3300042958 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-434 Genome Quebec 3300042958 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 52.70846 -109.791027 1715689891 3869301 644 70 990 157 0.0 Metagenome 3300031355 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-70 DOE Joint Genome Institute (JGI) 3300031355 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.759 -70.891 545152859 1133137 567 10 905 17 SRX5358179 Unrestricted 12.08 Metagenome 7000000137 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000137 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 362963 849 0 0 0 0 SRX024118 0.0 Metagenome 3300050671 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_7A1_100318_0320 DOE Joint Genome Institute (JGI) 3300050671 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 1086110926 1749352 408 136 678 188 Unrestricted 22.28 Metagenome 3300047995 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_121205.NP1 DOE Joint Genome Institute (JGI) 3300047995 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 824903831 1864477 607 129 989 219 Unrestricted 10.29 Metagenome 3300038791 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-3_at_6-7_cm Genome Quebec 3300038791 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89934 -73.72822 346951618 924323 537 13 1167 29 0.0 Metagenome 3300012171 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT466_2 DOE Joint Genome Institute (JGI) 3300012171 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.923 -106.9516 220091077 518806 264 16 560 24 SRX3368878 Unrestricted 0.0 Metagenome 3300005623 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP2 Nymph Lake 10 v3 (version 2) DOE Joint Genome Institute (JGI) 3300005623 Metagenome Analysis pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23720654 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.7523206 -110.7253926 3.75 3818442 6925 4 0 3 0 Unrestricted 0.0 Metagenome 3300010035 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Lord Howe Island, Old Settlement Bay, Australia - Cyphastrea 2 metagenome DOE Joint Genome Institute (JGI) 3300010035 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes momedinamunoz@gmail.com Medina Medina No Host-associated Invertebrates Coral Cnidaria Unclassified Coral -31.55 159.0833 1604144981 2376386 65 168 95 188 SRX2525673 Unrestricted 0.0 Metagenome 3300048132 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_150218.NP1 DOE Joint Genome Institute (JGI) 3300048132 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 897458676 2141125 589 107 1028 190 Unrestricted 12.17 Metagenome 2030936003 *Microbiome Permanent Draft Bioreactor Anammox bacterial community from Nijmegen, The Netherlands Bioreactor anammox bacterial community from Nijmegen, The Netherlands - Brocadia fulgida enrichment v1 DOE Joint Genome Institute (JGI) 2030936003 Metagenome Analysis lucy / pga released based on JGI ITS No Yes sgtringe@lbl.gov, m.jetten@science.ru.nl; m.jetten@microbiology.ru.nl Susannah Tringe, Mike Jetten; mike jetten Yes 22103529 Engineered Wastewater Nitrogen removal Nutrient removal Anammox Bioreactor 51.842 5.858 41954873 77567 17 0 23 0 Unrestricted 0.0 Metagenome 3300029025 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 256_12M Beijing Genomics Institute (BGI) 3300029025 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 64411564 95515 45 2 69 2 ERX491027 0.0 Metagenome 3300042352 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME20Jun2017-rr0782 DOE Joint Genome Institute (JGI) 3300042352 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 517817659 829302 209 19 250 47 Unrestricted 18.94 Metagenome 3300019851 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Sao Paulo, Brazil - ZCI1 Center for Advanced Technologies in Genomics, Sao Paulo University 3300019851 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Engineered Solid waste Composting Zoo waste Unclassified compost -23.651072 -46.620675 41111259 91290 54 2 68 1 0.0 Metagenome 3300000302 *Microbiome Permanent Draft Chicken cecum microbial communities from Ireland CECUM_8-3 University College Cork 3300000302 Metagenome Analysis meta-velvet released per JGI data release policy Yes Yes simone.rampelli@unibo.it Simone Rampelli No Host-associated Birds Large intestine Digestive system Ceca Chicken Cecum 51.897783 -8.470613 62373868 83381 296 1 404 0 0.0 Metagenome 3300061664 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0348 Microbiome Insights 3300061664 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 153513161 222120 39 4 62 5 0.0 Metagenome 3300026142 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026142 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 4824601235 11487162 1815 182 3257 275 SRX2782752 Unrestricted 0.0 Metagenome 3300036120 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T0 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036120 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 57458049 117124 108 2 205 5 SRX4415302, SRX7705521 Unrestricted 0.0 Metagenome 3300007097 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 158924089 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007097 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 72084855 83354 50 0 72 0 0.0 Metagenome 3300043735 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - FDOC_A50 DOE Joint Genome Institute (JGI) 3300043735 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.1424 -62.8815 666660567 1914459 479 3 867 2 Unrestricted 7.87 Metagenome 3300071032 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_049-M-20200602-COMP-DNA1 3300071032 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 8916457 29210 71 9 105 14 0.0 Metagenome 3300055471 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.2W.7 SIP fraction DOE Joint Genome Institute (JGI) 3300055471 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 169496421 347881 101 5 162 4 Unrestricted 12.46 Metagenome 3300031084 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLC.R1 DOE Joint Genome Institute (JGI) 3300031084 Metagenome Analysis spades v. 3.12.0 Yes Yes icelab@berkeley.edu Steven Lindow No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 37.8864 -122.2981 626217327 912754 321 31 393 66 SRX5656672 Unrestricted 82.61 Metagenome 3300055549 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.16C.13 SIP fraction DOE Joint Genome Institute (JGI) 3300055549 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 152477792 301053 120 60 249 88 Unrestricted 8.9 Metagenome 3300059419 *Microbiome Permanent Draft Sorghum rhizosphere and bulk soil microbial communities from University of Arizona Maricopa Agricultural Center, AZ, USA Soil microbial communities from unplanted plot in University of Arizona Maricopa Agricultural Center, AZ, USA - 3_0-15_MAC_20210810 DOE Joint Genome Institute (JGI) 3300059419 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Agricultural land Soil Unclassified Soil 33.07735 -111.974819 425551620 1027855 597 27 1050 29 Unrestricted 7.6 Metagenome 3300000423 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5 v6 (version 6) DOE Joint Genome Institute (JGI) 3300000423 Metagenome Analysis Velvet released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300035156 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 37SMC DOE Joint Genome Institute (JGI) 3300035156 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological biocrust 34.3778 -117.6098 770640317 1548723 715 49 1123 83 SRX7621458 Unrestricted 13.89 Metagenome 3300020727 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 29MAY2009 hypolimnion DOE Joint Genome Institute (JGI) 3300020727 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 129099922 271160 92 25 138 46 Unrestricted 0.0 Metagenome 3300069617 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_005-M-20160816-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069617 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 3804650 11987 18 1 31 2 0.0 Metagenome 3300036575 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C6-5A DOE Joint Genome Institute (JGI) 3300036575 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 242025183 742298 461 9 834 11 SRX8804185 Unrestricted 5.08 Metagenome 3300001487 *Microbiome Permanent Draft Sheep rumen microbial communities from New Zealand from high and low methane emitting sheep Sheep rumen microbial communities from New Zealand - Rank36_high DOE Joint Genome Institute (JGI) 3300001487 Metagenome Analysis Velvet Released because these are assemblies from SRA data No Yes janine.kamke@agresearch.co.nz, janine.kamke@uni-wuerzburg.de Janine Kamke No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen -40.352 175.608 512656400 1020495 700 42 1085 81 0.0 Metagenome 3300044983 *Microbiome Permanent Draft Switchgrass rizosphere microbial communities from Pacific Northwest National Laboratory, Richland, WA, United States Soil microbial communities from switchgrass plot in Kellogg Biological Station, Michigan, United States - EC5020 DOE Joint Genome Institute (JGI) 3300044983 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes james.moran@pnnl.gov James Moran No Environmental Terrestrial Unclassified Soil Agricultural land soil 42.4058 -85.4023 2414490344 3944789 666 43 1133 50 Unrestricted 13.86 Metagenome 3300001608 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF031 DOE Joint Genome Institute (JGI) 3300001608 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 754540 2506 16 4 33 9 SRX2014347 Unrestricted 0.0 Metagenome 3300023499 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_69C University of California, Irvine 3300023499 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 127567626 129442 20 0 28 0 0.0 Metagenome 3300039386 *Microbiome Permanent Draft Soil microbial communities from the crude oil polluted soil from Bobrka and the control soil from Bialowieza national park, Poland Soil microbial communities from Bialowieza Forest, Poland - X5A1 Illumina 3300039386 Metagenome Analysis metaSPAdes v. 1.2.4 released by JGI data releasing policy No Yes valeria.imperato@uhasselt.be Valeria Imperato No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 52.7 23.86667 2633846 7558 6 2 31 2 0.0 Metagenome 7000000299 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 763759525 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000299 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 61839 96 0 0 0 0 SRX024016 0.0 Metagenome 3300027290 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepB_8d DOE Joint Genome Institute (JGI) 3300027290 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 127581367 304484 111 15 186 27 SRX5245321 Unrestricted 33.66 Metagenome 2170459011 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect Gram positive lysis 0-10cm 454 Life Sciences 2170459011 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.804241 -0.372114 249630825 646636 215 3 381 16 0.0 Metagenome 3300017840 *Microbiome Permanent Draft Drill cutting resevoir metagenome Drill cuttings microbial communities from oil reservoir in Mossoro region, Brazil - 41 National Laboratory for Scientific Computing (LNCC), Brazil 3300017840 Metagenome Analysis Geneious released by JGI data releasing policy No Yes lfagnez@ufrnet.br Lucymara Agnez-Lima No Environmental Terrestrial Unclassified Oil reservoir Unclassified oil resevoir rocks and water -5.79 -37.34 682669785 3301649 3124 8 5601 23 0.0 Metagenome 3300013452 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100729 University of Pennsylvania 3300013452 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4325390 5369 4 3 12 5 SRX756121 0.0 Metagenome 3300011182 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - 4C3 metaG DOE Joint Genome Institute (JGI) 3300011182 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; wswingley@niu.edu Ramunas Stepanauskas; Wesley Swingley No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 41.6655 -87.5437 13-14 119572428 262199 176 1 290 0 SRX3008003 Unrestricted 0.0 Metagenome 3300012056 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ009 MetaG DOE Joint Genome Institute (JGI) 3300012056 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.7091 -74.664 78476044 152352 45 66 101 109 SRX3539433 Unrestricted 0.0 Metagenome 3300004177 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 15_LOW5 DOE Joint Genome Institute (JGI) 3300004177 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 225594198 586378 96 0 209 1 SRX2720156 Unrestricted 0.0 Metagenome 3300038508 *Microbiome Permanent Draft Organic and conventional farm associated microbial communities from Canada and USA Wastewater microbial communities from conventional feedlot in Alberta, Canada - WW121 Colorado State University 3300038508 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 50.34 -113.77 37475690 73635 78 0 128 0 0.0 Metagenome 3300049184 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - C24_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049184 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 224153359 508052 358 16 617 17 Unrestricted 0.0 Metagenome 3300027405 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A1-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300027405 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 10576021 33713 57 2 101 2 SRX1990519 Unrestricted 0.0 Metagenome 3300035071 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 13_4.5_C_13_1 DOE Joint Genome Institute (JGI) 3300035071 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1866 -2.2146 892843257 1984666 216 7 335 11 SRX8233765 Unrestricted 17.8 Metagenome 3300015349 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_22AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015349 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 372049321 617888 59 288 82 513 SRX3926165 Unrestricted 7.91 Metagenome 3300005275 *Microbiome Permanent Draft Hot Spring microbial communities from Great Boiling Spring, Nevada Hot spring sediment microbial communities from Great Boiling Spring, Nevada - Cellulolytic enrichment CS 85C v3 (version 3) DOE Joint Genome Institute (JGI) 3300005275 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes brian.hedlund@unlv.edu Brian P. Hedlund, Brian Hedlund Yes 23555835 Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot Spring 40.67 -119.37 6.37 93642314 164694 70 0 117 1 Unrestricted 0.0 Metagenome 3300036396 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Pleurocapsa minor HA4230-MV1 and co-occurring heterotrophs from cement wall surface from Nuuanu Pali Lookout, Hawaii, United States - 20190126_45 DOE Joint Genome Institute (JGI) 3300036396 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Engineered Built environment Unclassified Cement wall Unclassified Cement wall surface 21.367 -157.792 39490055 38331 11 0 11 0 SRX8849215 Unrestricted 448.54 Metagenome 3300053154 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere DOE Joint Genome Institute (JGI) 3300053154 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121497 -123.269638 478747170 821095 181 84 281 136 Unrestricted 0.0 Metagenome 3300011460 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00247 Weill Cornell Medical College 3300011460 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.99 18987834 23638 12 0 11 0 SRX822226 0.0 Metagenome 3300012588 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00623 Weill Cornell Medical College 3300012588 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.81 -73.9 22514438 35500 11 0 16 0 SRX822590 0.0 Metagenome 3300052789 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BG2-11_D0 (version 2) DOE Joint Genome Institute (JGI) 3300052789 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3634 19.0475 520774278 1095401 232 7 316 12 Restricted 0.0 Metagenome 3300042130 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030L_E14_070516_97 DOE Joint Genome Institute (JGI) 3300042130 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.1836 -97.9974 115655557 329660 233 11 372 20 Unrestricted 7.42 Metagenome 3300039019 *Microbiome Permanent Draft Freshwater microbial communities from Morogoro River, Tanzania Freshwater microbial communities from Morogoro River, Tanzania - U3D8 University of Genoa 3300039019 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic River Freshwater Unclassified Freshwater -6.84171557 37.77246058 7516576 17932 771 0 1091 2 0.0 Metagenome 3300019737 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BRT_9-10_MG DOE Joint Genome Institute (JGI) 3300019737 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 128201609 319773 264 29 483 57 SRX3983244 Unrestricted 3.73 Metagenome 3300011251 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.2 Toyama Prefectural University 3300011251 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Unclassified marine 36.97018 137.37008 7.7 80930140 184751 46 3 70 17 0.0 Metagenome 3300005762 *Microbiome Permanent Draft Algae and Fungi communities from freshwater lake in Auvergne, France during and after algae bloom Algae and Fungi communities from freshwater lake in Auvergne, France - sample CCAP7 day 4 of algae bloom Institut Pasteur, Lille, France 3300005762 Metagenome Analysis Trinity 2.06 released per JGI data release policy No Yes luenlee@yahoo.com L Monchy, Luen Luen LI No Environmental Aquatic Lake Freshwater Algal bloom Lake 45.495847 2.887922 35985161 38767 143 20 206 29 0.0 Metagenome 3300005340 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG DOE Joint Genome Institute (JGI) 3300005340 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 42.3948 -85.3738 5102318326 13850161 3167 222 5510 431 SRX2740818 Unrestricted 0.0 Metagenome 3300030389 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_138 - TARA_R100000773 CEA Genoscope 3300030389 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine 6.3332 -102.9432 193688289 426676 22 0 44 0 0.0 Metagenome 7000000610 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159713063 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000610 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 7027012 11627 0 0 0 0 0.0 Metagenome 3300027619 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027619 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 340228369 806252 249 72 492 157 SRX3312030 Unrestricted 0.0 Metagenome 3300019458 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG DOE Joint Genome Institute (JGI) 3300019458 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Cave Deep subsurface Wall biofilm Bio-ooze 19.0643 -155.8008 1260280170 2026748 677 2 1083 2 SRX4663522 Unrestricted 17.6 Metagenome 3300001469 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN103 DOE Joint Genome Institute (JGI) 3300001469 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 39.23550963 -121.2836963 451045 1490 33 0 75 2 SRX3311736, SRX3311735 Unrestricted 0.0 Metagenome 3300027546 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027546 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 279260315 700265 277 43 525 79 SRX2021673, SRX1985855, SRX1985854 Unrestricted 0.0 Metagenome 3300024466 *Microbiome Permanent Draft Permafrost microbial communities from glacier foreland in Svalbard, Norway Permafrost microbial communities from glacier foreland in Svalbard, Norway - ML20 KOREA POLAR RESEARCH INSTITUTE 3300024466 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes sarbjeet.niraula@mavs.uta.edu Sarbjeet Niraula No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 78.90500474 12.07917602 7.9 6831617 18308 54 11 88 16 0.0 Metagenome 3300049000 *Microbiome Permanent Draft Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA - CNF8ET3 DOE Joint Genome Institute (JGI) 3300049000 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sydneyg@ucr.edu Sydney Glassman No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 33.6681 -117.456 1381752256 2315966 555 156 935 207 Unrestricted 14.05 Metagenome 2019105002 *Microbiome Permanent Draft Canis familiaris fecal microbial communities from the University of Illinois at Urbana-Champaign Canis familiaris fecal microbial communities from University of Illinois at Urbana-Champaign - beet pulp 1 J. Craig Venter Institute (JCVI) 2019105002 Metagenome Analysis Unknown No Yes sdowd@pathogenresearch.org Scot E. Dowd Yes 20962874 Host-associated Mammals Large intestine Digestive system Fecal Canis familiaris fecal 40.11 -88.2 165356062 480320 166 0 333 0 0.0 Metagenome 3300006628 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_12_17 DOE Joint Genome Institute (JGI) 3300006628 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 15488382 42433 139 0 290 0 SRX2924866 Unrestricted 0.0 Metagenome 3300060368 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210615_19_21 DOE Joint Genome Institute (JGI) 3300060368 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 491664601 721811 219 114 290 149 Unrestricted 37.72 Metagenome 3300031276 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-20 DOE Joint Genome Institute (JGI) 3300031276 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.759 -70.891 481932932 1069639 448 4 736 1 SRX5359059 Unrestricted 7.98 Metagenome 3300027065 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF006 (SPAdes) DOE Joint Genome Institute (JGI) 3300027065 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 48220602 145716 54 5 116 4 SRX2014320 Unrestricted 0.0 Metagenome 3300014293 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_107 The George Washington University (GWU) 3300014293 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 117705167 189131 138 1 202 3 SRX656247 0.0 Metagenome 2046860007 *Microbiome Permanent Draft Freshwater sediment microbial communities from Lake Washington, Seattle, USA, for methane and nitrogen cycles Freshwater sediment microbial communities from Lake Washington, Seattle, for methane and nitrogen Cycles - Microc enrich af exp to meth lab w 13Ccarbon-no added nitrate DOE Joint Genome Institute (JGI) 2046860007 Metagenome Analysis Newbler released based on JGI ITS No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova Yes 23638358 Environmental Aquatic Lentic Freshwater Sediment Freshwater sediment 47.07 -122.27889 76631179 210153 36 0 73 0 Unrestricted 0.0 Metagenome 3300065591 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 791 in Vulcan, Alberta, Canada - S00JY_0020 Microbiome Insights 3300065591 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 50.2910242 -113.1540896 105166852 156000 53 2 99 3 0.0 Metagenome 2140918019 *Microbiome Finished Sulfur spring sediment and crust microbial communities from Zodletone, Oklahoma, USA Sulfur spring sediment and crust microbial communities from Zodletone, Oklahoma, USA - C4_filtered Mogene LC 2140918019 Metagenome Analysis released per JGI data release policy No Yes aspain@ou.edu Anne M. Spain, Anne Spain No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Sulfur spring sediment and crust 35.100293 -98.749601 7 22444686 57439 35079 567 2666 0 0.0 Metagenome 3300044711 *Microbiome Permanent Draft Switchgrass rizosphere microbial communities from Pacific Northwest National Laboratory, Richland, WA, United States Soil microbial communities from switchgrass plot in Kellogg Biological Station, Michigan, United States - EC5011 DOE Joint Genome Institute (JGI) 3300044711 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes james.moran@pnnl.gov James Moran No Environmental Terrestrial Unclassified Soil Agricultural land soil 42.4058 -85.4023 1575805753 2585526 545 30 900 33 Unrestricted 13.47 Metagenome 3300003820 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH10Sep07 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003820 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 55703306 135058 52 19 82 30 SRX2565420 Unrestricted 0.0 Metagenome 3300006029 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA DOE Joint Genome Institute (JGI) 3300006029 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 432266802 1190463 173 23 281 50 SRX2854477 Unrestricted 0.0 Metagenome 3300015056 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01536 Weill Cornell Medical College 3300015056 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.99 21768046 22483 8 0 6 0 SRX823412 0.0 Metagenome 3300049182 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - D21_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049182 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 438001274 979638 507 9 882 15 Unrestricted 0.0 Metagenome 3300037492 *Microbiome Permanent Draft Sediment microbial communities from various lakes in Switzerland Sediment microbial communities from Lake Zurich, Zurich, Switzerland - LZ_0.25 DOE Joint Genome Institute (JGI) 3300037492 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mark.lever@usys.ethz.ch Mark Alexander Lever No Environmental Aquatic Lake Freshwater Sediment sediment 47.2832 8.5937 549440906 837577 316 18 519 26 SRX9147961 Unrestricted 18.7 Metagenome 3300027018 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN575 (SPAdes) DOE Joint Genome Institute (JGI) 3300027018 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.070856 -96.582821 85777234 238368 145 5 247 7 SRX3311837 Unrestricted 0.0 Metagenome 3300013454 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100714 University of Pennsylvania 3300013454 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 5185006 7588 5 5 9 8 SRX756136 0.0 Metagenome 3300011184 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - Floc-Cal metaG DOE Joint Genome Institute (JGI) 3300011184 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; wswingley@niu.edu Ramunas Stepanauskas; Wesley Swingley No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 41.6655 -87.5437 13-14 131153473 321472 432 18 844 32 SRX2526872 Unrestricted 0.0 Metagenome 3300039957 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA FertPrarie soil microbial communities from Boone County, Iowa, USA - PF32-WS-July2012 Iowa State University 3300039957 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land FertPrarie soil 42.01375 -93.783837 18454139 53362 121 5 273 5 0.0 Metagenome 3300013829 *Microbiome Permanent Draft Bioreactor microbial communities from dechlorination culture samples - Genome Institute of Singapore Bioreactor microbial communities from dechlorination culture samples - Genome Institute of Singapore - CG4-PCE Genome Institute of Singapore 3300013829 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Bioreactor Unclassified Unclassified Unclassified Bioreactor 53411343 73794 29 0 36 0 SRX392466 0.0 Metagenome 3300012349 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG DOE Joint Genome Institute (JGI) 3300012349 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Saprolite Vadose zone soil 39.7291 -123.6419 1955359731 4027460 1274 48 2225 102 SRX3372903 Unrestricted 0.0 Metagenome 3300002275 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 06JUL2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002275 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 39258451 95523 98 30 171 43 SRX1989774 Unrestricted 0.0 Metagenome 3300049460 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere DOE Joint Genome Institute (JGI) 3300049460 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5878 -123.1938 437072920 701975 159 55 236 69 Unrestricted 26.85 Metagenome 3300021543 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina ""control"", cg14ic 200bp no Eukaryotes last" University of New South Wales 3300021543 Metagenome Analysis IDBA-UD released by Emmanuelle BOTTE Yes Yes e.botte@aims.gov.au; n.webster@aimsgov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Cinachyra sp. (marine sponge) -9.828217 150.820517 69337911 123624 69 1 90 4 0.0 Metagenome 3300001009 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN352 DOE Joint Genome Institute (JGI) 3300001009 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 117241 366 14 2 20 4 SRX3311797 Unrestricted 0.0 Metagenome 3300003539 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS891_Anemone_DNA 3300003539 Metagenome Analysis CLC genomics workbench 7.0 released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com; randerson@carleton.edu; elks@mit.edu Caroline Fortunato, Caroline Fortunato; Rika Anderson; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933231 -130.013645 378883382 883442 185 23 515 57 0.0 Metagenome 3300036976 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0819U12re DOE Joint Genome Institute (JGI) 3300036976 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.039 153283967 253967 123 0 218 1 SRX8670448 Unrestricted 13.0 Metagenome 3300053152 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 endosphere DOE Joint Genome Institute (JGI) 3300053152 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.588289 -123.192566 380023158 534818 143 100 264 140 Unrestricted 12.09 Metagenome 3300002762 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE17-C DOE Joint Genome Institute (JGI) 3300002762 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.32 1748622 5541 35 9 54 14 SRX1991449 Unrestricted 0.0 Metagenome 3300049251 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA13 DOE Joint Genome Institute (JGI) 3300049251 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 450974456 1150260 518 10 904 9 Unrestricted 7.4 Metagenome 3300041458 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_10 MetaG AgResearch, New Zealand, Mosgeil 3300041458 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Rhizoplane Roots Dairy farm pasture -43.648506 172.343549 631880964 1457030 234 24 739 74 0.0 Metagenome 3300005764 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) DOE Joint Genome Institute (JGI) 3300005764 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov, cpan@ou.edu Susannah Tringe, Chongle Pan Yes 29358607 Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 9.1086 -79.8436 17581731548 47958124 8173 137 14152 256 SRX3886490, SRX3886489, SRX3886493, SRX3886494, SRX3886491, SRX3886492 Unrestricted 0.0 Metagenome 3300011000 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015 Shell Corporation 3300011000 Metagenome Analysis idba_ud released by JGI data releasing policy No Yes nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis No Environmental Terrestrial Ranch Soil Agricultural land soil 52.172047 -113.738964 2302864909 9885084 1091 37 2052 75 0.0 Metagenome 3300070339 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_045-M-20180723-COMP-DNA1 3300070339 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 1835949 6226 13 1 20 3 0.0 Metagenome 3300038336 *Microbiome Permanent Draft Groundwater microbial communities from Horonobe Underground Research Laboratory (URL), Japan Groundwater microbial communities from Horonobe Underground Research Laboratory (URL), Japan - horonobe_ig2102 University of California, Berkeley 3300038336 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 28350393 Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 45.045278 141.859444 242436985 308547 141 0 193 1 0.0 Metagenome 3300047375 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_170412.NP2 DOE Joint Genome Institute (JGI) 3300047375 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 535344211 1047411 302 52 478 85 Unrestricted 16.97 Metagenome 3300015171 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Storglaciaren, Tarfala, Sweden (Sample st-3a, vegetated patch on medial moraine) University of Bristol 3300015171 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.900853 18.44175 6.9 216231874 447277 162 6 231 5 0.0 Metagenome 3300044551 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_CSTR_192 DOE Joint Genome Institute (JGI) 3300044551 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 125801835 183561 131 3 180 3 SRX12655976 Unrestricted 99.65 Metagenome 3300050307 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_70 DOE Joint Genome Institute (JGI) 3300050307 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.598 161.007 599996212 1019085 248 34 372 49 SRX18235917 Restricted 23.25 Metagenome 3300002623 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2w-12 DOE Joint Genome Institute (JGI) 3300002623 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 249346 832 26 0 32 1 SRX1991201 Unrestricted 0.0 Metagenome 3300024937 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 39_LOW7 (SPAdes) DOE Joint Genome Institute (JGI) 3300024937 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 75712786 112777 34 0 55 0 SRX2720571 Unrestricted 0.0 Metagenome 3300009110 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 198m, 2.7-0.2um, replicate b Georgia Genomics Facility 3300009110 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 371649348 517747 203 2 261 5 0.0 Metagenome 3300043449 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Rio Grande, Albuquerque, New Mexico, USA - riogrande_2019_sw_WHONDRS-S19S_0066 DOE Joint Genome Institute (JGI) 3300043449 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 35.1986 -106.643 855118260 1415680 340 29 507 34 Unrestricted 18.69 Metagenome 3300001155 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1 DOE Joint Genome Institute (JGI) 3300001155 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 2520391 7721 62 9 106 10 SRX3311911 Unrestricted 0.0 Metagenome 3300023313 *Microbiome Permanent Draft Hydrothermal Fe-rich Mat Reference Genomes Hydrothermal Fe-rich mat microbial community from Urashima Vent Field, Mariana Arc, Pacific Ocean - 801-BM1-B4 University of Delaware 3300023313 Metagenome Analysis metaSPAdes v. 3.10.0 Metagenomes associated with bioRxiv doi:10.1101/722066 Yes Yes mcallis@uw.edu Sean McAllister No Environmental Aquatic Hydrothermal vents Marine Microbial mats Hydrothermal Fe-rich mat 12.92235 143.64925 224728852 372212 194 9 236 14 0.0 Metagenome 3300003485 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_300_biof DOE Joint Genome Institute (JGI) 3300003485 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioremediation Unclassified Thiocyanate Unclassified Wastewater bioreactor -33.936637 18.478905 231297208 366114 168 20 286 31 SRX2576696 Unrestricted 0.0 Metagenome 3300026211 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV199 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026211 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 284150843 583004 222 0 339 3 SRX2782414 Unrestricted 0.0 Metagenome 3300043571 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME26Sep2001-rr0923 DOE Joint Genome Institute (JGI) 3300043571 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 527996255 834491 276 55 378 65 Unrestricted 16.82 Metagenome 3300048134 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_140820.NP1 DOE Joint Genome Institute (JGI) 3300048134 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 835668679 1873485 661 111 960 178 Unrestricted 11.45 Metagenome 3300061662 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0330 Microbiome Insights 3300061662 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 321042532 450762 98 1 141 3 0.0 Metagenome 3300000243 *Microbiome Draft Marine microbial communities from chronically polluted sediments in four geographic locations Svalbard Archipelago station 2 sample NOR 18_50m DOE Joint Genome Institute (JGI) 3300000243 Metagenome Analysis released based on JGI ITS Yes Yes hdionisi@cenpat.edu.ar Hebe Dionisi No Environmental Aquatic Intertidal zone Marine Sediment Marine 78.243786 15.656147 161365800 395468 272 123 482 171 Unrestricted 0.0 Metagenome 3300026144 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_D2_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026144 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Terrestrial Wetlands Soil Unclassified Soil 37.4962 -122.1329 218009731 524283 316 9 562 15 SRX2753767 Unrestricted 0.0 Metagenome 3300036857 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_July_plot1_rep1 DOE Joint Genome Institute (JGI) 3300036857 Metagenome Analysis metaspades v. 3.13.0 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6539 -80.6288 2547989987 3916898 583 4 931 9 SRX8179261 Unrestricted 17.34 Metagenome 3300041851 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_168 MetaG AgResearch, New Zealand, Mosgeil 3300041851 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1124063076 2220271 279 17 927 30 0.0 Metagenome 3300070738 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_008-M-20170731-COMP-DNA1 3300070738 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 1235902 3951 19 5 29 3 0.0 Metagenome 3300023101 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14 DOE Joint Genome Institute (JGI) 3300023101 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 653592662 1148656 219 5 335 6 SRX4415367, SRX8128071 Unrestricted 0.0 Metagenome 3300027786 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 7/17/14 B DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027786 Metagenome Analysis spades v. 3.11.1 Yes Yes ebyoung@uwm.edu Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 945350220 1832421 637 169 879 277 SRX2747782 Unrestricted 0.0 Metagenome 3300042354 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME01Jun2011-rr0788 DOE Joint Genome Institute (JGI) 3300042354 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 373648033 581491 115 21 156 35 Unrestricted 22.53 Metagenome 3300042721 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - B_a6.9 Re-assembly Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042721 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1237 -89.1404 57995303 56108 3 2 9 3 SRX5234792 0.0 Metagenome 3300000304 *Microbiome Permanent Draft Chicken cecum microbial communities from Ireland FAECES_0-135 University College Cork 3300000304 Metagenome Analysis meta-velvet released per JGI data release policy Yes Yes simone.rampelli@unibo.it Simone Rampelli No Host-associated Birds Large intestine Digestive system Ceca Chicken Cecum 51.897783 -8.470613 63911179 81117 261 0 413 0 0.0 Metagenome 3300070457 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_001-O-20180717-COMP-DNA1 3300070457 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 40724156 116995 104 31 200 34 0.0 Metagenome 3300071034 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_053-M-20200602-COMP-DNA1 3300071034 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 7041924 23071 55 8 83 13 0.0 Metagenome 3300032156 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0 DOE Joint Genome Institute (JGI) 3300032156 Metagenome Analysis spades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5367 -110.4246 3969884390 8556390 2616 15 4478 30 SRX6380997 Unrestricted 9.39 Metagenome 3300024241 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from Mancos shale, Colorado, United States - Mancos A_50_July_PB DOE Joint Genome Institute (JGI) 3300024241 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Deep subsurface sediment 38.96 -106.99 97414409 266713 186 6 329 14 SRX4456989 Unrestricted 8.94 Metagenome 3300005648 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius clavatus LIZARD ISLAND.1 DOE Joint Genome Institute (JGI) 3300005648 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 691346729 1551770 12 8 16 56 SRX2712176 Unrestricted 0.0 Metagenome 3300061588 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_SEK1_4_to_RHK1 DOE Joint Genome Institute (JGI) 3300061588 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.154 -124.211 809572211 1536950 482 232 799 308 Unrestricted 0.0 Metagenome 3300008068 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159713063 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008068 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 15778052 27481 14 0 21 0 0.0 Metagenome 3300030102 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_109 - TARA_R100001509 CEA Genoscope 3300030102 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com Benjamin Tully No Environmental Aquatic Unclassified Marine Unclassified Marine 1.9928 -84.5766 314375851 622541 34 0 45 0 0.0 Metagenome 3300014891 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from two oxygen tension regimens in Lake Washington, USA Freshwater lake sediment microbial communities from low oxygen tension regimen in Lake Washington, USA - LO rep. 1 week 2 - L1_2_WGA University of Washington 3300014891 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 47.631156 -122.254601 6164317 18526 6 0 7 0 0.0 Metagenome 7000000318 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human throat microbial communities from NIH, USA - visit 1, subject 763961826 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000318 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human 39.0042816 -77.1012173 60040741 103043 0 0 0 0 SRX024929 0.0 Metagenome 3300002987 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB DOE Joint Genome Institute (JGI) 3300002987 Metagenome Analysis Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.9082 -79.0499 153075690 272006 111 0 213 0 SRX2562216 Unrestricted 0.0 Metagenome 3300026336 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen5, Rep 1 DOE Joint Genome Institute (JGI) 3300026336 Metagenome Analysis spades v. 3.11.1 Yes Yes xpeng@seoe.sc.edu; momalley@engineering.ucsb.edu Xuefeng (Nick) Peng; Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 18601264 22646 52 0 72 0 SRX5645531 Unrestricted 0.0 Metagenome 3300006320 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006320 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 157517607 237332 123 0 161 0 0.0 Metagenome 3300027550 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius vacuus BAHAMAS.2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027550 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 53.109679 8.847516 642156211 713788 2 3 3 7 SRX2577643 Unrestricted 0.0 Metagenome 7000000559 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 763820215 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000559 Metagenome Analysis No Yes ipagani@lbl.gov Ionna Pagani No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 61166062 95156 0 0 0 0 0.0 Metagenome 3300040417 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_031-M-20170710-COMP-DNA1 Battelle Memorial Institute 3300040417 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 4792678 14327 34 8 58 8 0.0 Metagenome 3300042173 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Seawater microbial communities from Algarve, Portugal - SW04 v2 Molecular Research LP (MR DNA) 3300042173 Metagenome Analysis Metawrap workflow v. 1.0.8 released by JGI data releasing policy Yes Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Environmental Aquatic Oceanic Marine Unclassified seawater 36.979778 -7.989111 69149001 89934 22 2 36 3 0.0 Metagenome 3300005356 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG DOE Joint Genome Institute (JGI) 3300005356 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 5033958816 13896665 3509 160 5773 340 SRX2740368 Unrestricted 0.0 Metagenome 7000000365 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 765013792 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000365 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2297984 2535 0 0 0 0 0.0 Metagenome 3300042085 *Microbiome Permanent Draft Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - J_a8.7 Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042085 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1237 -89.1404 928170010 907707 2 6 4 13 SRX5234790 0.0 Metagenome 3300028857 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N1_2 DOE Joint Genome Institute (JGI) 3300028857 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 405531812 975740 730 74 1228 142 SRX5357445 Unrestricted 0.0 Metagenome 3300037230 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPON2-1-M DOE Joint Genome Institute (JGI) 3300037230 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3578 19.0528 900231507 1724978 262 28 509 41 SRX8167116 Unrestricted 9.21 Metagenome 3300033439 *Microbiome Permanent Draft Meromitic Lake A Freshwater microbial communities from meromitic lake A, Ellesmere Island, Canada - Sample 14m re-analysis2 Laval University 3300033439 Metagenome Analysis Megahit v. 1.0.5 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 82.99445 -75.443367 813367445 1569166 527 16 755 44 0.0 Metagenome 3300025818 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025818 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 389795832 899826 172 2 293 3 SRX2852904 Unrestricted 0.0 Metagenome 3300012960 *Microbiome Permanent Draft Amended soil microbial communities from New York, USA to study carbon cycling Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG DOE Joint Genome Institute (JGI) 3300012960 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes twhitman@wisc.edu Thea Whitman No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.4531 -76.3842 2667671831 6232987 2234 112 3976 204 SRX3566511 Unrestricted 5.36 Metagenome 3300002049 *Microbiome Permanent Draft Soil microbial communities from Amlakhadi River, Gujarat, India Soil microbial communities from Amlakhadi River, Gujarat, India - Sample 3 3300002049 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Aquatic River Freshwater Sediment Soil 21.636337 72.989458 0 0 0 0 0 0 0.0 Metagenome 3300011591 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00317 Weill Cornell Medical College 3300011591 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.74 -74.0 25683087 37990 20 0 35 0 SRX822290 0.0 Metagenome 3300048917 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 DOE Joint Genome Institute (JGI) 3300048917 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Rhizoplane Roots Unclassified Rhizoplane soil 42.40581 -85.40228 1996948584 3278687 594 47 956 59 Unrestricted 13.07 Metagenome 3300027434 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A3-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300027434 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 10846882 37242 76 5 127 6 SRX1991150 Unrestricted 0.0 Metagenome 3300025865 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska, USA - Barrow Graham LP Ref core NGADG0011-212 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025865 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.29053 -156.788654 802962291 1644196 460 6 769 11 SRX1990910 Unrestricted 0.0 Metagenome 3300049853 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_A_2_drought DOE Joint Genome Institute (JGI) 3300049853 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 76356503 155500 213 13 384 23 Unrestricted 0.0 Metagenome 3300001300 *Microbiome Permanent Draft Switchgrass rhizosphere microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere microbial communities from Knoxville, Tennessee, USA - 12_3 University of Tennessee 3300001300 Metagenome Analysis released per JGI data release policy No Yes jwang43@utk.edu Jun Wang No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 35.9606 -83.9208 17275201 117904 439 8 738 12 0.0 Metagenome 3300045958 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - CSC1D DOE Joint Genome Institute (JGI) 3300045958 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 1500619212 2606953 607 54 1083 69 Unrestricted 14.14 Metagenome 3300012040 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT746_2 DOE Joint Genome Institute (JGI) 3300012040 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9778 -107.0025 406150164 913998 466 33 885 57 SRX3539423 Unrestricted 0.0 Metagenome 3300050164 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D15_SEK2_2_to_RHK2 DOE Joint Genome Institute (JGI) 3300050164 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.153 -124.211 160275132 365443 119 32 203 49 Unrestricted 37.49 Metagenome 3300006196 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Bulk soil microbial communities from a Populus tree surrounding site in Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 DOE Joint Genome Institute (JGI) 3300006196 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Environmental Terrestrial Tree plantation Soil Unclassified Bulk soil 35.8444 -83.9599 2068506564 7007065 1109 36 2121 109 SRX2841166, SRX2841165, SRX2841167 Unrestricted 0.0 Metagenome 3300018042 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10 DOE Joint Genome Institute (JGI) 3300018042 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 1388894958 2722227 666 35 1140 79 SRX3960108 Unrestricted 6.94 Metagenome 3300069354 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_044-M-20170627-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069354 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 120322481 316879 125 6 270 8 0.0 Metagenome 3300042766 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S3_40_50 NMDC pilot DOE Joint Genome Institute (JGI) 3300042766 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228508 -119.2716818 54959738 154908 157 4 294 2 SRX2523176 0.0 Metagenome 3300020611 *Microbiome Permanent Draft Deep subsurface rock core microbial communities from Deccan traps, Ukhalu, Maharashtra, India Deep subsurface rock core microbial communities from Deccan traps, Ukhalu, Maharashtra, India - U11_55 Marine Biological Laboratory 3300020611 Metagenome Analysis Spades released by JGI data releasing policy No Yes avishekdutta14@gmail.com Avishek Dutta No Environmental Terrestrial Rock Deep subsurface Unclassified Deep subsurface rock core 17.125867 73.869133 914696127 2098455 215 43 494 81 0.0 Metagenome 3300040538 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Mid-Atlantic, VA, USA - BLAN_007-M-20170713-COMP-DNA1 Battelle Memorial Institute 3300040538 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Farm Terrestrial soil 39.06026 -78.07164 2880138 8939 35 2 59 2 0.0 Metagenome 3300012664 *Microbiome Permanent Draft Freshwater microbial communities from rivers and streams along an organic matter gradient associated with agriculture in Ontario, Canada Freshwater microbial communities from Zephyr Creek, Ontario, Canada - S17 Molecular Research LP (MR DNA) 3300012664 Metagenome Analysis metaSPAdes released by JGI data releasing policy No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lotic Freshwater Unclassified Freshwater 44.25162 -79.2626 7.81 238305253 804709 94 8 214 29 0.0 Metagenome 3300020476 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001750 (ERX556108-ERR598958) CEA Genoscope 3300020476 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 33.9044 -56.7834 1416407946 3480586 908 102 1747 199 0.0 Metagenome 3300046741 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 soil DOE Joint Genome Institute (JGI) 3300046741 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.587994 -123.192874 6.81 263785381 484930 195 22 400 26 Unrestricted 20.22 Metagenome 3300000189 *Microbiome Permanent Draft Delisea pulchra's surface microbial communities from Botany Bay, Sydney, Australia Delisea pulchra's surface microbial communities from Botany Bay, Sydney, Australia - BBAY58_SOAP_k21_Abyss_k53_GAA J. Craig Venter Institute 3300000189 Metagenome Analysis Assembled with SOAPdenovo and Abyss separately and then joined with GAA released per JGI data release policy No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Red algae Unclassified Delisea pulchra's surface -33.991017 151.232433 509637747 1853850 0 0 0 0 0.0 Metagenome 3300035140 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0608S40 DOE Joint Genome Institute (JGI) 3300035140 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8959 -97.0388 626533507 1515487 727 3 1308 1 SRX8258704 Unrestricted 6.3 Metagenome 3300027710 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027710 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 39.849 -81.036 556372167 1297289 358 109 561 150 SRX2996494 Unrestricted 0.0 Metagenome 3300031747 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22 DOE Joint Genome Institute (JGI) 3300031747 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 2077684224 5147973 503 3 892 9 SRX5817459 Unrestricted 12.09 Metagenome 3300018962 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - late stage, 3 min after wetting v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018962 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 374600470 760263 345 12 557 12 0.0 Metagenome 7000000719 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 159753524 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000719 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 2119112 2227 0 0 0 0 0.0 Metagenome 3300025122 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025122 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 18.92 -108.7999 401215173 911064 26 0 26 0 SRX2557415 Unrestricted 0.0 Metagenome 3300014498 *Microbiome Permanent Draft Permafrost microbial communities from Stordalen Mire, Sweden Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG DOE Joint Genome Institute (JGI) 3300014498 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rich.270@osu.edu Virginia Rich Yes 30013118 Environmental Terrestrial Wetlands Soil Permafrost Fen 68.35 19.05 2209215370 4796105 1472 42 2726 85 SRX3593702 Unrestricted 5.28 Metagenome 3300026813 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026813 Metagenome Analysis spades v. 3.11.1 Yes Yes jim.fredrickson@pnnl.gov; binskeep@montana.edu Jim Fredrickson; William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.733 -110.709 3 29894753 92240 14 1 22 0 SRX2753798 Unrestricted 0.0 Metagenome 3300009637 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_11_40 DOE Joint Genome Institute (JGI) 3300009637 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 424805212 740266 200 0 342 2 SRX3003288 Unrestricted 0.0 Metagenome 3300013606 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100142 University of Pennsylvania 3300013606 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 5503330 9901 5 3 9 5 SRX756390 0.0 Metagenome 3300002897 *Microbiome Permanent Draft Soil microbial communities from Kansas (Konza Prairie Natural Area and Manhattan, Kansas, USA) Soil microbial communities from Manhattan, Kansas, USA - Sample 500um Nextera DOE Joint Genome Institute (JGI) 3300002897 Metagenome Analysis manual release request from Christa Yes Yes elbrodie@lbl.gov, ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Unclassified Soil Unclassified Soil 39.214 -96.5852 58150411 160851 157 0 312 0 Unrestricted 0.0 Metagenome 3300043704 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - Rondonia_Forest_1_A0m DOE Joint Genome Institute (JGI) 3300043704 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Unclassified Soil -10.169 -62.782 591230167 1593525 456 10 917 25 Unrestricted 8.11 Metagenome 3300040145 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 064B_R1 University of Maryland 3300040145 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.5287 18.89726 10325147 22227 32 4 52 6 0.0 Metagenome 3300000841 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from University of Liverpool Illum_XT2_IDBAUD University of Liverpool 3300000841 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 186749 573 14 0 27 0 0.0 Metagenome 3300010004 *Microbiome Finished Microbiology of confined controlled built environments Public buildings (several types of infrastructure) floor intact (viable) microbial communities from the Eekholt wildlife park, Eekholt, Germany - public buildings, PMA treated samples, L_plus Eurofins MWG Operon 3300010004 Metagenome Analysis Ray Meta released per JGI data release policy No Yes alexander.mahnert@gmail.com Alexander Mahnert No Engineered Built environment Unclassified House Unclassified built environment 53.95025767 10.03109478 31287694 37109 8 0 9 1 0.0 Metagenome 3300000167 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 120m DOE Joint Genome Institute (JGI) 3300000167 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.35 -123.29 233577846 464696 167 11 312 15 Unrestricted 0.0 Metagenome 3300056830 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - APS4_20W_TP2_16O DOE Joint Genome Institute (JGI) 3300056830 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 1760742138 2266758 359 132 457 186 Unrestricted 29.13 Metagenome 3300028976 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 335_B Beijing Genomics Institute (BGI) 3300028976 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 29737654 32321 13 0 13 0 ERX491085 0.0 Metagenome 3300017977 *Microbiome Finished Marine microbial communities from Tor Caldara Marine established microbial mat bacterial communities from Tor Caldara shallow water vent, Tyrrhenian Sea, Italy - TCM1 Molecular Research LP (MR DNA) 3300017977 Metagenome Analysis SPADES released by JGI data releasing policy No Yes sushmita.patwardhan@gmail.com Sushmita Patwardhan No Environmental Aquatic Hydrothermal vents Marine Microbial mats Marine microbial mat 41.48583333 12.58972222 136759472 208026 207 5 225 11 0.0 Metagenome 3300009186 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG DOE Joint Genome Institute (JGI) 3300009186 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 46.8319 -72.5 8488730 14774 7 0 9 0 SRX2955010 Unrestricted 0.0 Metagenome 3300028731 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2 DOE Joint Genome Institute (JGI) 3300028731 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 356285919 700023 199 74 324 98 SRX5357456 Unrestricted 0.0 Metagenome 3300011708 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00340 Weill Cornell Medical College 3300011708 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -74.01 34635251 49676 17 3 35 3 SRX822313 0.0 Metagenome 3300006643 *Microbiome Permanent Draft Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia - TJ11 time point Australian Centre for Ecogenomics 3300006643 Metagenome Analysis CLC released per JGI data release policy No Yes crinke@lbl.gov Christian Rinke No Environmental Aquatic Coastal Marine Unclassified marine surface water -34.1192 151.2267 147985732 215021 29 0 31 0 0.0 Metagenome 3300029479 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001894-56 Beijing Genomics Institute (BGI) 3300029479 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 164666588 215882 122 0 209 0 0.0 Metagenome 3300051391 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - ATCcR3D-21 DOE Joint Genome Institute (JGI) 3300051391 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 88360683 147900 90 11 156 19 Unrestricted 91.92 Metagenome 3300034377 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 27HNS DOE Joint Genome Institute (JGI) 3300034377 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Sub-biocrust Soil Unclassified sub-biocrust soil 34.7856 -115.66 423816741 1056726 687 35 1267 50 SRX7619826 Unrestricted 9.47 Metagenome 3300025411 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug09 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025411 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 140663700 285973 91 26 122 40 SRX2565201 Unrestricted 0.0 Metagenome 3300053039 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - HDCcR3D-21 DOE Joint Genome Institute (JGI) 3300053039 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 1157829178 2290212 1174 122 2075 202 Unrestricted 0.0 Metagenome 3300059634 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2021-0086 DOE Joint Genome Institute (JGI) 3300059634 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.70406 -83.25291 1470599837 3275545 693 348 1127 510 Unrestricted 0.0 Metagenome 3300029541 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P030V6 Beijing Genomics Institute (BGI) 3300029541 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 145400405 186768 106 1 142 0 0.0 Metagenome 3300052894 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Colorado, USA - BV_C2_S1 DOE Joint Genome Institute (JGI) 3300052894 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 40.99145 -106.60539 611756823 911382 151 79 266 119 Unrestricted 26.66 Metagenome 3300025676 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025676 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 445001211 870622 245 28 357 34 Unrestricted 0.0 Metagenome 3300021557 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Upa-Upasina ""control"", co14ic 200bp no Eukaryotes last" University of New South Wales 3300021557 Metagenome Analysis IDBA-UD released by Emmanuelle BOTTE Yes Yes n.webster@aims.gov.au; e.botte@aims.gov.au Nicole Webster; Emmanuelle BOTTE No Host-associated Porifera Unclassified Unclassified Unclassified C. singaporensis (marine sponge) -9.828217 150.820517 173530730 298494 74 8 112 15 0.0 Metagenome 3300018891 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - early stage, 18 hrs after wetting v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018891 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 301344000 593541 285 7 469 16 0.0 Metagenome 3300049672 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_A_3_drought DOE Joint Genome Institute (JGI) 3300049672 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 165706303 421918 424 12 812 41 Unrestricted 11.33 Metagenome 3300004015 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqC_D1 DOE Joint Genome Institute (JGI) 3300004015 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.197227 -122.010124 1068333578 3428336 1136 20 2481 50 SRX7142752 Unrestricted 0.0 Metagenome 3300036937 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8WP15 DOE Joint Genome Institute (JGI) 3300036937 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 687199469 1441145 494 6 813 6 SRX8379805 Unrestricted 8.72 Metagenome 3300041931 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from the Rocky Mountain Biological Laboratory (RMBL), Gothic, Colorado, United States - 2018WM_7C DOE Joint Genome Institute (JGI) 3300041931 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9595 -106.99 152143869 439160 222 9 449 15 SRX14810890 Unrestricted 8.74 Metagenome 3300041776 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - A_29_wk_2 DOE Joint Genome Institute (JGI) 3300041776 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9514 -106.986 157527587 494449 284 6 595 14 SRX14808148 Unrestricted 7.37 Metagenome 3300006312 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2 of subject 159753524 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006312 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; snayfach@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 115817678 154949 149 0 201 0 0.0 Metagenome 3300011674 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00224 Weill Cornell Medical College 3300011674 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.86 -73.92 16459046 23227 17 0 19 0 SRX822203 0.0 Metagenome 3300044658 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R DOE Joint Genome Institute (JGI) 3300044658 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 14.75 -16.85 701676526 1143922 295 48 513 57 Unrestricted 19.2 Metagenome 3300039063 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark - 1601-PRJ1066-RD-Sewage-97_S1 Technical University of Denmark 3300039063 Metagenome Analysis Yes Yes No Engineered Wastewater Unclassified Sewage Unclassified Sewage 55.640494 12.5058209 3025610 7254 36 0 52 0 ERX1596340 0.0 Metagenome 3300007307 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 2, subject 159591683 replicate 1 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007307 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 17691260 19470 9 7 11 6 SRX024533, SRX024534 0.0 Metagenome 3300029764 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 038_10_29_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029764 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 190416015 240664 208 0 291 0 0.0 Metagenome 3300020050 *Microbiome Permanent Draft Freshwater viral communities from Chicago Sanitary Ship Canal, USA Freshwater viral communities from Laramie, Illinois, USA - 1 University of Illinois-Urbana Champaign 3300020050 Metagenome Analysis SPADES v3.10.1 released by JGI data releasing policy No Yes wtliu@illinois.edu Wen-Tso Liu No Environmental Aquatic River Freshwater Unclassified Freshwater 41.89166 -90.510555 609402011 1259795 3 0 4 3 0.0 Metagenome 3300039324 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 9_M Beijing Genomics Institute (BGI) 3300039324 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 150432987 195468 77 0 166 0 ERX491322 0.0 Metagenome 3300034144 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 58SNS DOE Joint Genome Institute (JGI) 3300034144 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Sub-biocrust Soil Unclassified sub-biocrust soil 34.7856 -115.66 141392651 366288 311 8 520 19 SRX7621480 Unrestricted 7.61 Metagenome 3300028114 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_13.5m DOE Joint Genome Institute (JGI) 3300028114 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater 39.9879 -1.8737 666227121 1147351 266 66 400 101 SRX5248806 Unrestricted 21.56 Metagenome 3300043678 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 411-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043678 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9747 -107.0656 472279160 1274097 448 29 752 63 Unrestricted 7.77 Metagenome 3300031237 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_35cm_T3_129 DOE Joint Genome Institute (JGI) 3300031237 Metagenome Analysis spades v. 3.12.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sandy soil 49.2598372 -123.2459363 165155100 337244 183 2 253 6 SRX5338662 Unrestricted 104.14 Metagenome 3300043333 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-347 Genome Quebec 3300043333 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.011402 -113.456511 1508911490 3062752 620 180 979 334 0.0 Metagenome 3300021385 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2016_4, 0.02 Toyama Prefectural University 3300021385 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Sediment marine 37.01526 137.61294 53656656 153628 28 5 50 5 0.0 Metagenome 3300027663 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027663 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 402241291 908746 287 68 552 105 SRX1986308, SRX2021689, SRX1986307 Unrestricted 0.0 Metagenome 3300044917 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_6_B DOE Joint Genome Institute (JGI) 3300044917 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 203267414 240610 120 1 151 2 Unrestricted 96.62 Metagenome 3300001413 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 DOE Joint Genome Institute (JGI) 3300001413 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 46943126 138719 71 12 130 21 SRX1987639 Unrestricted 0.0 Metagenome 3300025110 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025110 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -11.499 -81.401 312146953 763752 19 0 31 0 SRX2926780 Unrestricted 0.0 Metagenome 3300037362 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 1-5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037362 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 376820144 1021889 492 13 832 28 SRX4415325, SRX8127834 Unrestricted 0.0 Metagenome 3300027722 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027722 Metagenome Analysis spades v. 3.11.1 Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0956 -99.1001 601814959 1344475 500 6 869 8 SRX2753774 Unrestricted 0.0 Metagenome 3300012433 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100399 University of Pennsylvania 3300012433 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9143939 16372 5 3 10 5 SRX756258 0.0 Metagenome 3300015681 *Microbiome Permanent Draft Microbial communities associated with sugarcane Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 003.1_C12 Universidade Estadual de Campinas 3300015681 Metagenome Analysis SPADES released by JGI data releasing policy No Yes scs.rafael@gmail.com Rafael Souza No Host-associated Plants Unclassified Phyllosphere Unclassified Phylosphere -22.8187222 -47.05896667 5091777 5053 6 0 6 0 0.0 Metagenome 3300014042 *Microbiome Permanent Draft Epidermal mucus viral and microbial communities from European eel in Spain Epidermal mucus viral and microbial communities from European eel in Spain - Ebro delta (0.22 um filter) University of Valencia 3300014042 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Fish Skin Integumentary system Epidermal mucus Epidermal mucus 40.647955 -0.738702 218457901 450971 133 7 209 9 SRX710670 0.0 Metagenome 3300036843 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_Dec_plot5_rep1 DOE Joint Genome Institute (JGI) 3300036843 Metagenome Analysis metaspades v. 3.13.0 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6541 -80.6298 1232120800 2132188 457 6 860 7 SRX8186437 Unrestricted 14.42 Metagenome 3300000257 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_F_10_SI03_100 DOE Joint Genome Institute (JGI) 3300000257 Metagenome Analysis Soap denovo and minimus released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Oceanic Marine Photic zone Marine 48.35 -123.3 194512667 519237 109 10 237 20 Unrestricted 0.0 Metagenome 3300042207 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D27_3 DOE Joint Genome Institute (JGI) 3300042207 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 218074409 329090 153 19 175 32 Unrestricted 54.08 Metagenome 3300016270 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 DOE Joint Genome Institute (JGI) 3300016270 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Unclassified Soil 18.321 -65.8172 2722746487 5940749 958 46 1816 73 SRX5313696, SRX3604197 Unrestricted 0.0 Metagenome 3300042927 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-330 Genome Quebec 3300042927 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.544102 -120.140743 1042988363 2289228 316 22 486 55 0.0 Metagenome 3300014962 *Microbiome Permanent Draft Surface and well water microbial communities from Bara Haldia, Bangladesh Surface water microbial communities from Bangladesh - BaraHaldiaSW0309 University of Tennessee 3300014962 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Groundwater Freshwater Unclassified Surface water 164472154 434914 65 7 143 17 0.0 Metagenome 3300046380 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA034-BCT DOE Joint Genome Institute (JGI) 3300046380 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6779 -83.4786 560724621 1387494 299 32 574 69 Unrestricted 9.45 Metagenome 3300070443 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Northern Great Plains Research Laboratory, North Dakota, USA - NOGP_061-M-20200708-COMP-DNA1 3300070443 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 12572248 37338 65 9 128 8 0.0 Metagenome 3300039837 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - NIWO_008-M-20160829-COMP-DNA1 Battelle Memorial Institute 3300039837 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.05425 -105.58237 27936674 77715 109 26 189 29 0.0 Metagenome 3300024976 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 16_LOW5 (SPAdes) DOE Joint Genome Institute (JGI) 3300024976 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 128782272 216155 65 0 77 0 SRX2720155 Unrestricted 0.0 Metagenome 3300001979 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 DOE Joint Genome Institute (JGI) 3300001979 Metagenome Analysis Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn rhizosphere 42.3948 -85.3738 512580866 1302461 1072 100 1979 185 SRX1990933 Unrestricted 0.0 Metagenome 3300050254 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_5 DOE Joint Genome Institute (JGI) 3300050254 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.598 161.007 543497880 867794 186 40 268 54 SRX18235860 Restricted 19.79 Metagenome 3300039511 *Microbiome Permanent Draft Glacier soil microbial communities from Mackay Glacier, Antarctica Glacier soil microbial communities from Mackay Glacier, Antarctica - MtG-4 University of Pretoria 3300039511 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Terrestrial Glacier Soil Unclassified Glacier soil -76.952 161.402 210466050 402196 83 0 110 1 0.0 Metagenome 3300002025 *Microbiome Permanent Draft Permafrost and active layer soil microbial communities from McGill Arctic Research Station (MARS), Canada, for enrichment studies Permafrost and active layer soil microbial communities from McGill Arctic Research Station (MARS), Canada, for enrichment studies - Sample_D1 3300002025 Metagenome Analysis released by JGI data releasing policy No Yes Tullis Onstott; Tatiana Vishnivetskaya; Karuna Chourey; Susan M. Pfiffner;Alice Layton No Environmental Terrestrial Unclassified Soil Permafrost Permafrost and active layer soil 79.26 -90.46 97008132 403260 356 1 515 4 0.0 Metagenome 2028778003 *Microbiome Permanent Draft Hot springs sediment microbial communities from the Great Boiling Springs, Nevada, USA Sample 300 2028778003 Metagenome Analysis released per JGI data releasing policy No Yes mhess@ucdavis.edu Matthias Hess No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot springs sediment 40.652 -119.372 6.5 6137913 8244 0 0 2 0 0.0 Metagenome 3300032221 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada - Lake 06-199 Genome Quebec 3300032221 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.112245 -81.03531 532123103 1148706 385 144 574 254 0.0 Metagenome 3300038377 *Microbiome Permanent Draft Diffuse flow microbial communities from hydrothermal vent near Loihi Seamount, Hawaii, USA Seawater microbial communities from hydrothermal vent pit near Loihi Seamount, Hawaii, USA - 59 The Marine Biological Laboratory 3300038377 Metagenome Analysis IDBA-UD v. 1.1.3 released by JGI data releasing policy No Yes asmith@simons-rock.edu Amy Smith No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Seawater 18.92 -155.27 5-6 31311913 47922 46 6 58 4 0.0 Metagenome 3300011970 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S12-02-D University of California, Los Angeles 3300011970 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 119584437 206144 117 1 184 0 SRX862074 0.0 Metagenome 3300010998 *Microbiome Permanent Draft Rumen microbial communities from healthy moose, Palmer, Alaska Rumen fluid microbial communities from healthy moose, Palmer, Alaska - F02 Ohio State University 3300010998 Metagenome Analysis IDBA-UD released by Lindsey Solden No Yes wrighton.1@osu.edu; solden.2@osu.edu Kelly Wrighton; Lindsey Solden Yes 30356154 Host-associated Mammals Stomach Digestive system Rumen Moose rumen 61.5997 -148.112 692634458 904582 802 14 1014 15 0.0 Metagenome 3300031199 *Microbiome Permanent Draft Soil and ectomycorrhiza microbial communities from Populus trichocarpa stands in riparian zones in the Pacific Northwest, United States Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S DOE Joint Genome Institute (JGI) 3300031199 Metagenome Analysis spades v. 3.12.0 Yes Yes kpeay@stanford.edu Kabir Peay No Environmental Terrestrial Riparian zone Soil Trees stand soil 44.5508 -123.25 921007633 2825808 908 49 1613 66 SRX5650390 Unrestricted 7.95 Metagenome 3300000733 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 DOE Joint Genome Institute (JGI) 3300000733 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 50633401 140839 112 0 210 0 SRX4341708 Unrestricted 0.0 Metagenome 3300060293 *Microbiome Permanent Draft Soil microbial communities from experimental field in IAREC, Washington State University, Posser, WA, USA Lab enriched soil microbial communities from experimental field in IAREC, Washington State University, Posser, WA, USA - SM_0531_LR DOE Joint Genome Institute (JGI) 3300060293 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Agricultural land Soil Unclassified Soil 46.25 -119.73 67621618 67680 29 1 28 2 Unrestricted 132.93 Metagenome 3300043425 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Stroubles Creek, Blacksburg, Virginia, USA - stroublescreek_2019_sw_WHONDRS-S19S_0089 DOE Joint Genome Institute (JGI) 3300043425 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 37.2101 -80.4451 668278275 1104443 471 157 801 223 Unrestricted 19.67 Metagenome 3300057167 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Michigan, United States - E2019-0028 DOE Joint Genome Institute (JGI) 3300057167 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.94416667 -83.545 441015799 895141 316 104 530 196 Unrestricted 24.97 Metagenome 3300037048 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Coal bed water microbial communities from the Powder River Basin, Montana, United States - T0F11 DOE Joint Genome Institute (JGI) 3300037048 Metagenome Analysis metaspades v. 3.13.0 Yes Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Aquatic Groundwater Deep subsurface Coalbed methane well water coal bed water 45.4351 -106.3918 884438806 1087116 309 3 424 6 SRX8395130 Unrestricted 20.07 Metagenome 3300070248 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Bartlett Experimental Forest, New Hampshire, USA - BART_040-O-20160727-COMP-DNA1 3300070248 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 862931 2408 20 3 51 8 0.0 Metagenome 3300028843 *Microbiome Permanent Draft Axial Seamount Reassemblies Marine deep subsurface microbial communities from hydrothermal vents in Axial Seamount, Pacific Ocean - FS898_N3Area_DNA IDBA_UD reassembly The Marine Biological Laboratory 3300028843 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Marine deep subsurface 45.943716 -129.985163 754439982 1450199 1132 21 1742 36 0.0 Metagenome 3300029356 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 044_10_28_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029356 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 199074257 248870 210 0 296 0 0.0 Metagenome 3300012238 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100761 University of Pennsylvania 3300012238 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 20629304 31706 34 0 44 0 SRX756089 0.0 Metagenome 3300053775 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_135 DOE Joint Genome Institute (JGI) 3300053775 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 346090270 1002792 724 119 1194 191 Restricted 0.0 Metagenome 3300045431 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_30m_2014 DOE Joint Genome Institute (JGI) 3300045431 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 409781464 743630 250 16 406 27 Unrestricted 35.71 Metagenome 3300014315 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleC_D1 DOE Joint Genome Institute (JGI) 3300014315 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.224476 -122.019341 351923506 846012 381 2 731 2 SRX7188162 Unrestricted 0.0 Metagenome 3300003812 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH22Jun08 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003812 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 51516264 126654 56 7 89 14 SRX2565423 Unrestricted 0.0 Metagenome 3300042683 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A54 University of California, Davis 3300042683 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 273805713 742910 302 6 571 21 0.0 Metagenome 3300049847 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from New Salem, Massachusetts, USA - hopbrook_2019_sed_WHONDRS-S19S_0012 DOE Joint Genome Institute (JGI) 3300049847 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 42.47179 -72.33027 550448455 1220962 329 8 655 11 Restricted 0.0 Metagenome 3300020518 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 17AUG2010 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020518 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 92637055 205756 98 16 153 29 SRX1989024 Unrestricted 0.0 Metagenome 3300040631 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_004-M-20131217-COMP-DNA1 Argonne National Laboratory 3300040631 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 1212482 4227 41 2 65 3 ERX2133979 0.0 Metagenome 3300028006 *Microbiome Permanent Draft Soil microbial communities from hillslopes of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 2-4-E_N DOE Joint Genome Institute (JGI) 3300028006 Metagenome Analysis spades v. 3.11.1 Yes Yes laurameredith@email.arizona.edu Laura Meredith No Engineered Artificial ecosystem Soil Mesocosm Unclassified soil 32.5788 -110.8509 178277475 425104 157 1 284 3 SRX5246420 Unrestricted 36.83 Metagenome 7000000624 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 159571453 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000624 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 201626213 315301 0 0 0 0 0.0 Metagenome 3300005913 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK1 DOE Joint Genome Institute (JGI) 3300005913 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli, Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 609947171 1407838 196 57 298 99 SRX2746612 Unrestricted 0.0 Metagenome 2081372003 *Microbiome Permanent Draft Marine microbial communities from Deepwater Horizon Oil Spill Marine microbial communities from Deepwater Horizon Oil Spill, sample, DHOS OV003 DOE Joint Genome Institute (JGI) 2081372003 Metagenome Analysis released based on JGI ITS No Yes janet.jansson@pnnl.gov, janet.jansson@pnnl.gov; omason@fsu.edu Janet Jansson, Janet Jansson; Olivia Mason Yes 22717885 Environmental Aquatic Oceanic Marine Oil-contaminated Marine 28.672222 -88.4375 200959529 270721 0 0 0 0 Unrestricted 0.0 Metagenome 3300020359 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000686 (ERX555921-ERR599117) CEA Genoscope 3300020359 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -8.896 -140.2861 369834437 955985 320 12 593 23 0.0 Metagenome 3300033620 *Microbiome Permanent Draft Metagenomic SGS 2x251 Staggered mock microbial community from ATCC, Manassas, VA, USA - ATCC1 Illumina 3300033620 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Laboratory 38.752303 -77.519989 28076692 33234 11 0 18 0 0.0 Metagenome 3300046833 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_6_D DOE Joint Genome Institute (JGI) 3300046833 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 209599878 239210 131 1 152 1 Restricted 0.0 Metagenome 3300057189 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - LE-25 DOE Joint Genome Institute (JGI) 3300057189 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.827 -83.193 610068814 1284227 329 195 498 287 Unrestricted 22.85 Metagenome 3300009818 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N1_30_40 DOE Joint Genome Institute (JGI) 3300009818 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380143 -119.2723688 181559573 390970 157 0 305 0 SRX2523197 Unrestricted 0.0 Metagenome 3300031513 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer DOE Joint Genome Institute (JGI) 3300031513 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5341 -110.798 504033992 1075543 253 0 360 1 SRX5651178 Unrestricted 150.68 Metagenome 3300020565 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 29APR2009 deep hole epilimnion ns (SPAdes) DOE Joint Genome Institute (JGI) 3300020565 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 173597482 369695 194 50 277 71 SRX1987726 Unrestricted 0.0 Metagenome 3300002781 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G09K4-12 DOE Joint Genome Institute (JGI) 3300002781 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 35904 118 14 0 31 1 SRX1991812 Unrestricted 0.0 Metagenome 3300026377 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B DOE Joint Genome Institute (JGI) 3300026377 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 198250366 484042 184 21 356 34 SRX4803700 Unrestricted 9.11 Metagenome 3300009122 *Microbiome Permanent Draft Syntrophic microbial communities from biogas reactors in Seattle, WA Syntrophic microbial communities from biogas reactors in Seattle, WA - R1.C13.But.B IBDA Molecular Research LP (MR DNA) 3300009122 Metagenome Analysis IBDA-UD v 1.1 released per JGI data release policy Yes Yes ziels@uw.edu Ryan Ziels No Engineered Wastewater Unclassified Anaerobic digestor Unclassified anaerobic wastewater sludge 47.652555 -122.304991 237251978 371089 158 0 249 0 0.0 Metagenome 3300011698 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01524 Weill Cornell Medical College 3300011698 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.99 26687758 44385 36 0 39 0 SRX823400 0.0 Metagenome 3300006918 *Microbiome Permanent Draft Agricultural soil microbial communities from Utah and Georgia to study Nitrogen management Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 DOE Joint Genome Institute (JGI) 3300006918 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jeanette.norton@usu.edu Jeanette Norton No Environmental Terrestrial Agricultural land Soil Unclassified Agricultural soil 41.7655 -111.8143 2480772668 5795959 2574 99 4450 203 SRX2922493 Unrestricted 0.0 Metagenome 3300048551 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_110112.NP1 DOE Joint Genome Institute (JGI) 3300048551 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 563296072 1215929 413 48 553 98 Unrestricted 14.93 Metagenome 3300034336 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Eunicella verrucosa from Algarve, Portugal - EV02H Molecular Research LP (MR DNA) 3300034336 Metagenome Analysis Metawrap workflow v. 1.0.7 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 8610243 8213 2 0 4 4 0.0 Metagenome 3300046089 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_10 DOE Joint Genome Institute (JGI) 3300046089 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9236 -106.9499 179512608 590392 615 53 1257 88 Unrestricted 0.0 Metagenome 3300013845 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00719 Weill Cornell Medical College 3300013845 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.72 -74.0 21697061 31582 8 0 28 0 SRX822686 0.0 Metagenome 3300045838 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - COA2S DOE Joint Genome Institute (JGI) 3300045838 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 1157392632 1990883 462 11 812 20 Unrestricted 13.89 Metagenome 3300004760 *Microbiome Permanent Draft Metagenomics analysis of sediments collected from Formosa Ridge Marine sediment microbial communities from Formosa Ridge, South China Sea G1-3 Beijing Genomics Institute (BGI) 3300004760 Metagenome Analysis SOAPdenovo (version 1.05) released per JGI data release policy No Yes mclai01@gmail.com Mei-Chin Lai No Environmental Aquatic Cold seeps Marine Sediment Marine sediment 22.11546667 119.28443333 7517288 16530 12 4 31 4 0.0 Metagenome 3300023295 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1075 DOE Joint Genome Institute (JGI) 3300023295 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 166137713 370407 144 1 226 0 SRX4397350 Unrestricted 10.76 Metagenome 3300025637 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025637 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 27054497, 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 417250652 763637 291 58 384 100 SRX2999683 Unrestricted 0.0 Metagenome 3300027929 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and M1 (3) (SPAdes) DOE Joint Genome Institute (JGI) 3300027929 Metagenome Analysis spades v. 3.11.1 Yes Yes jakimbrel@lbl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 77455415 97397 33 0 38 0 SRX3782532 Unrestricted 0.0 Metagenome 7000000495 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160704339 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000495 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 75366519 145707 0 0 0 0 0.0 Metagenome 3300006045 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Neocapritermes taracua P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Nt197 P3 DOE Joint Genome Institute (JGI) 3300006045 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, NNIvanova@lbl.gov; brune@mpi-marburg.mpg.de Natasha Ivanova, Natalia Ivanova; Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 5.0626 -53.0462 3193530320 6901629 1836 21 3596 29 SRX3329378 0.0 Metagenome 3300049933 *Microbiome Permanent Draft Soil biocrust microbial and viral communities from model ecosystem in Berkeley Lab, California, USA Soil biocrust microbial communities from model ecosystem in Berkeley Lab, California, USA - 48hr_B DOE Joint Genome Institute (JGI) 3300049933 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sroux@lbl.gov Simon Roux No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil biocrust 37.87739 -122.250939 2041228425 3381791 878 29 1262 50 Restricted 30.94 Metagenome 3300032266 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada - Lake 06-080 Genome Quebec 3300032266 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.2479 -69.6377 580553037 1239622 331 85 626 174 0.0 Metagenome 3300000679 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 23 DOE Joint Genome Institute (JGI) 3300000679 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 5612930 18032 23 0 48 0 SRX4340128 Unrestricted 0.0 Metagenome 3300014769 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS43_18 University of Hohenheim 3300014769 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 92319007 155235 67 0 109 0 0.0 Metagenome 3300006965 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada T0 (3) T34 (live) enrichments of Methanogenic microbial communities using Athabascan oil sands Shell Corporation 3300006965 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 24527687 42400 20 0 29 0 0.0 Metagenome 3300054568 *Microbiome Permanent Draft Soil microbial communities from pasture in Hopland Research and Extension Center, CA, USA Soil viral communities from pasture in Hopland Research and Extension Center, CA, USA - T3-H218O+P-A library kit 1SPlus DOE Joint Genome Institute (JGI) 3300054568 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes trubl1@llnl.gov Gareth Trubl No Environmental Terrestrial Pasture Soil Unclassified Soil 39.00177 -123.06967 95960984 242979 70 5 159 8 Unrestricted 177.63 Metagenome 3300017936 *Microbiome Permanent Draft Coastal wetland sediment microbial communities from the Mid-Atlantic and Southeast Atlantic Coast of USA, responding to salinity intrusion. Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1 DOE Joint Genome Institute (JGI) 3300017936 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Freshwater sediment 35.9061 -76.1569 771647837 1738104 711 11 1274 20 SRX4368807 Unrestricted 4.83 Metagenome 3300017771 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 48 SPOT_SRF_2013-11-13 DOE Joint Genome Institute (JGI) 3300017771 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 480431688 1118589 119 63 240 116 SRX7207529, SRX7207530 Unrestricted 0.0 Metagenome 3300027209 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S3_0_10 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027209 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228508 -119.2716818 141969920 402951 252 12 427 20 SRX2522700 Unrestricted 0.0 Metagenome 7000000200 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 158802708 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000200 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 169160711 261263 0 0 0 0 0.0 Metagenome 3300006657 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T14 (2) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006657 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 50933914 99324 61 0 99 0 0.0 Metagenome 3300046316 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_61 DOE Joint Genome Institute (JGI) 3300046316 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9703 -106.997 53565986 145330 236 78 465 108 Restricted 0.0 Metagenome 3300005479 *Microbiome Permanent Draft Activated sludge microbial communities from EBPR reactors in the US and Australia Activated sludge microbial communities from EBPR reactors in the US and Australia - sample from Queensland, Australia DOE Joint Genome Institute (JGI) 3300005479 Metagenome Analysis Phrap 4 & JAZZ released based on JGI ITS Yes Yes phugenholtz@lbl.gov Phil Hugenholtz Yes 16998472 Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Activated sludge -27.4872 153.1974 26490200 35167 16 0 28 1 Unrestricted 0.0 Metagenome 3300014787 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS62_0 University of Hohenheim 3300014787 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 122439451 197166 73 0 121 0 0.0 Metagenome 3300003128 *Microbiome Permanent Draft Acid mine drainage microbial communities from Los Rueldos abandoned Hg mine in Spain Acid mine drainage microbial communities from Los Rueldos abandoned Hg mine in Spain - Sample B1A Institute of Catalysis, The Higher Council for Scientific Research (CSIC) 3300003128 Metagenome Analysis Made public because these are downloaded from Genbank No Yes mferrer@icp.csic.es Manuel Ferrer Yes 24430486 Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 43.25 -5.7666667 14354694 26498 11 0 22 1 0.0 Metagenome 3300031941 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080 DOE Joint Genome Institute (JGI) 3300031941 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 2672458267 6012862 870 29 1592 70 SRX5820630 Unrestricted 9.34 Metagenome 3300013796 *Microbiome Permanent Draft Wastewater microbial communities from municipal sewage treatment plants in Nanjing, China Wastewater microbial communities from municipal sewage treatment plant in Nanjing, China - DC_IW_meta Nanjing University 3300013796 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 94199925 237565 97 6 215 19 SRX425455 0.0 Metagenome 3300069207 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Chase Lake Wetlands, North Dakota, USA - WOOD_004-M-20210714-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069207 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 47.12584 -99.253801 4721797112 9918436 1952 61 3361 112 0.0 Metagenome 3300001218 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 16JUL2010 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300001218 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 524133 1405 8 2 14 4 SRX3310670 Unrestricted 0.0 Metagenome 3300061681 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0588 Microbiome Insights 3300061681 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 101675205 147848 97 19 175 24 0.0 Metagenome 3300009676 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA6_MetaG DOE Joint Genome Institute (JGI) 3300009676 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 37.43 138.83 896231486 1557165 743 5 1183 5 SRX2338990 Unrestricted 0.0 Metagenome 3300043694 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - Rondonia_Pasture_2_A1m DOE Joint Genome Institute (JGI) 3300043694 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.17 -62.833 650003159 1687253 441 8 845 20 Unrestricted 6.92 Metagenome 3300005541 *Microbiome Permanent Draft Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 DOE Joint Genome Institute (JGI) 3300005541 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shadeash@msu.edu, shade.ashley@gmail.com Ashley Shade Yes 30397342 Environmental Terrestrial Unclassified Soil Unclassified Surface soil 40.7999 -76.3402 2768548087 7752370 1743 89 2883 177 SRX2837972 Unrestricted 0.0 Metagenome 3300021054 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5a_4mM DOE Joint Genome Institute (JGI) 3300021054 Metagenome Analysis spades v. 3.10.1 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 84866213 73169 3 1 8 3 SRX4010503 Unrestricted 64.86 Metagenome 3300001265 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY84 J. Craig Venter Institute (JCVI) 3300001265 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 1227405394 5247803 199 192 503 335 0.0 Metagenome 3300025186 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP2052 (SPAdes) DOE Joint Genome Institute (JGI) 3300025186 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 15.91 -124.49 55611151 102617 61 24 97 22 SRX1982394 Unrestricted 0.0 Metagenome 3300020437 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000282 (ERX555906-ERR599074) CEA Genoscope 3300020437 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 14.5 70.0 1036518994 2750870 407 36 728 76 0.0 Metagenome 3300012325 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100449 University of Pennsylvania 3300012325 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 15418489 38910 18 0 35 0 SRX756549 0.0 Metagenome 3300031753 *Microbiome Permanent Draft Hardwood forest soil microbial communities from various locations in the United States Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515 DOE Joint Genome Institute (JGI) 3300031753 Metagenome Analysis spades v. 3.12.0 Yes Yes jdraff@indiana.edu Jonathan Raff No Environmental Terrestrial Temperate forest Soil Bulk soil hardwood forest soil 39.0844 -86.4705 2161206023 4653015 797 45 1398 87 SRX5649051 Unrestricted 9.67 Metagenome 3300056654 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.20C.12 SIP fraction DOE Joint Genome Institute (JGI) 3300056654 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 185887749 346533 132 42 268 80 Unrestricted 11.66 Metagenome 3300008059 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit number 3 of subject 763536994 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008059 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 35260965 60157 41 0 57 0 0.0 Metagenome 3300042648 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Incisitermes snyderi from Fort Lauderdale Research & Education Center, Florida, USA - Iy174 Eurofins MWG Operon 3300042648 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 26.0839646 -80.2393931 1347046709 1339582 127 32 147 71 0.0 Metagenome 3300035152 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0819S02 DOE Joint Genome Institute (JGI) 3300035152 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0388 690176246 1647125 646 1 1128 4 SRX8272972 Unrestricted 6.16 Metagenome 3300046475 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere DOE Joint Genome Institute (JGI) 3300046475 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1211 -123.2693 751510400 1292718 264 35 497 56 Unrestricted 13.86 Metagenome 3300012297 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100316 University of Pennsylvania 3300012297 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 7168157 12914 21 4 35 10 SRX756341 0.0 Metagenome 3300071036 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_001-O-20160824-COMP-DNA1 3300071036 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 74643539 219387 136 10 266 20 0.0 Metagenome 3300022847 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #48 DOE Joint Genome Institute (JGI) 3300022847 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 155718155 245958 88 14 146 23 SRX4396385 Unrestricted 23.1 Metagenome 3300032154 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Lab enriched produced water microbial communities from pipeline in Medicine Hat, AB, Canada - S122P University of Calgary 3300032154 Metagenome Analysis MetaSpades v. 3.13.0 released by JGI data releasing policy No Yes nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis No Engineered Built environment Unclassified Pipeline Unclassified produced water 50.041667 -110.6775 233446458 648383 515 2 1237 11 0.0 Metagenome 7000000515 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 159227541 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000515 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 173847267 250473 0 0 0 0 0.0 Metagenome 3300018050 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN - reassembly DOE Joint Genome Institute (JGI) 3300018050 Metagenome Analysis IDBA (k41 to k101, steps of 10) released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 161092775 176026 50 5 32 3 SRX2518379 0.0 Metagenome 3300028888 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2 DOE Joint Genome Institute (JGI) 3300028888 Metagenome Analysis spades v. 3.11.1 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -40.3794 175.6106 3739977822 7395057 3456 48 5323 70 SRX5785080, SRX5785079 Unrestricted 0.0 Metagenome 3300070283 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dead Lake, Alabama, USA - DELA_004-M-20160824-COMP-DNA1 3300070283 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 29586761 93848 98 6 179 7 0.0 Metagenome 3300037083 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-S DOE Joint Genome Institute (JGI) 3300037083 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0475 902390459 1704715 355 19 594 26 SRX8137291 Unrestricted 8.9 Metagenome 7000000568 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764143897 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000568 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 111531229 212768 0 0 0 0 0.0 Metagenome 3300050121 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim1 70-74 DOE Joint Genome Institute (JGI) 3300050121 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.352987 19.047292 300840398 420636 133 6 179 14 Restricted 33.73 Metagenome 3300026146 *Microbiome Permanent Draft Utah desert microbiome from environmental samples near Hanksville, Utah, USA Rock biofilm microbial communities from Utah desert near Hanksville, Utah, USA - E5 McGill University 3300026146 Metagenome Analysis canu v. 1.7 released by Catherine Maggiori No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Terrestrial Unclassified Soil Desert Rock biofilm 38.41645811 -110.78437161 1571372 2107 0 0 0 0 0.0 Metagenome 3300056725 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Towuti Lake, South Sulawesi, Indonesia - Towuti_110m_2015 DOE Joint Genome Institute (JGI) 3300056725 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.7 121.4 858815918 1454901 503 22 782 20 Restricted 20.38 Metagenome 3300027784 *Microbiome Permanent Draft Alkaline sediment microbial communities from Soda lakes and Soda Solonchak soils Alkaline sediment microbial communities from Lake Tanatar, Kulunda Steppe, Russia - 8KL_010_SED (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027784 Metagenome Analysis spades v. 3.11.1 Yes Yes g.muijzer@uva.nl Gerard Muyzer No Environmental Aquatic Alkaline Non-marine Saline and Alkaline Sediment Alkaline sediment 51.39 79.48 999685568 1823398 893 16 1395 31 SRX1667442 Unrestricted 0.0 Metagenome 3300012621 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100478 University of Pennsylvania 3300012621 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 23588846 49042 16 0 34 0 SRX756520 0.0 Metagenome 3300005173 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgHMA DOE Joint Genome Institute (JGI) 3300005173 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 132660823 477738 263 9 543 36 SRX2521249 Unrestricted 0.0 Metagenome 3300000306 *Microbiome Permanent Draft Alviniconcha endosymbiont microbial communities from the Eastern Lau Spreading center hydrothermal vents, Pacific Ocean Gamma1 Harvard University 3300000306 Metagenome Analysis released per JGI data release policy No Yes rbeinart@fas.harvard.edu Roxanne Beinart No Host-associated Mollusca Gills Respiratory system Intracellular Alviniconcha endosymbiont -20.76389 -176.19167 3644675 5154 1 0 1 1 0.0 Metagenome 3300048687 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 soil DOE Joint Genome Institute (JGI) 3300048687 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.587823 -123.193444 6.71 954963763 1701516 410 21 756 48 Unrestricted 16.89 Metagenome 3300042356 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME10Jun2015-rr0793 DOE Joint Genome Institute (JGI) 3300042356 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 497605422 776796 179 12 245 26 Unrestricted 23.4 Metagenome 3300026693 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN595 (SPAdes) DOE Joint Genome Institute (JGI) 3300026693 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.53 -96.582821 14009580 39720 39 0 61 1 SRX1986975 Unrestricted 0.0 Metagenome 3300005085 *Microbiome Permanent Draft Passive wastewater remediation pond microbial communities from Pennsylvania, USA Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich - 47s-102 University of Cincinnati 3300005085 Metagenome Analysis Velvet v. 0.7.57 released per JGI data release policy No Yes rlamendella@lbl.gov Regina Lamendella No Environmental Aquatic Groundwater Freshwater Contaminated Groundwater 40.0 -74.5 0 0 0 0 0 0 0.0 Metagenome 3300002617 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A1-12 DOE Joint Genome Institute (JGI) 3300002617 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 124012 415 32 1 37 3 SRX1991154 Unrestricted 0.0 Metagenome 2100351011 *Microbiome Permanent Draft Coastal water and sediment microbial communities from Arctic Ocean, off the coast from Alaska Marine sediment microbial communities from Arctic Ocean, off the coast from Alaska - sample from medium methane PC12-240-170cm DOE Joint Genome Institute (JGI) 2100351011 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes kirchman@cms.udel.edu, kirchman@udel.edu David Kirchman No Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Coastal water and sediment 74.0678 -145.54687 386166283 1071024 248 29 463 0 Unrestricted 0.0 Metagenome 3300039874 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lajas Experimental Station, Atlantic Neotropical, PR, USA - LAJA_003-M-20160913-COMP-DNA1 Battelle Memorial Institute 3300039874 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 18.02125 -67.0769 24044772 72331 50 19 85 16 0.0 Metagenome 3300048136 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_160807.NP2 DOE Joint Genome Institute (JGI) 3300048136 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 1036876894 2302311 597 90 876 178 Unrestricted 16.69 Metagenome 3300045049 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R DOE Joint Genome Institute (JGI) 3300045049 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 14.75 -16.85 1341243442 2179842 536 63 796 83 Unrestricted 18.39 Metagenome 3300009591 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Sandy's Spring West, USA to study Microbial Dark Matter (Phase II) - SSWsed_130316 DOE Joint Genome Institute (JGI) 3300009591 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes brian.hedlund@unlv.edu; rstepanauskas@bigelow.org Brian Hedlund; Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring 40.653 -119.3749 7.03 233530326 618870 262 2 417 5 SRX2753882 Unrestricted 0.0 Metagenome 3300037175 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 S2 30-34 DOE Joint Genome Institute (JGI) 3300037175 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 545321194 915965 161 4 259 5 SRX8144761 Unrestricted 21.79 Metagenome 3300051093 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - YNP_CreekBiofilm_1 DOE Joint Genome Institute (JGI) 3300051093 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 119621482 157178 67 5 77 5 Unrestricted 331.31 Metagenome 3300040228 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from LBJ National Grassland , Southern Plains, TX, USA - CLBJ_032-M-20170413-COMP-DNA1 Battelle Memorial Institute 3300040228 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 33.40123 -97.57 7984101 20123 28 4 62 8 0.0 Metagenome 3300010241 *Microbiome Permanent Draft Microbial communities from interfaces within marine sediments from the South China Sea Marine sediment microbial community from clay sediment within the South China Sea Oregon State University 3300010241 Metagenome Analysis MetaSPAdes v 3.8.1 released per JGI data release policy No Yes michaelgraw@gmail.com Michael Graw No Environmental Aquatic Unclassified Sediment Unclassified marine sediment 12.91889 115.04722 153.63 6773629 17423 10 0 16 0 0.0 Metagenome 3300036670 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Anderson Lake #993 DOE Joint Genome Institute (JGI) 3300036670 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.6063 78.1714 259724658 486016 148 48 168 63 SRX8865283 Unrestricted 34.69 Metagenome 3300045969 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_7_F DOE Joint Genome Institute (JGI) 3300045969 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 201482225 242485 109 1 147 2 Restricted 108.43 Metagenome 2084038013 *Microbiome Permanent Draft Anoplophora glabripennis gut microbial communities from Worchester, Massachusetts, USA Anoplophora glabripennis gut microbial communities from Worchester, Massachusetts, USA - Larvae DOE Joint Genome Institute (JGI) 2084038013 Metagenome Analysis Newbler v. 2.4 released based on JGI ITS No Yes sgtringe@lbl.gov, jec16@psu.edu Susannah Tringe, John Carlson Yes 24023907 Host-associated Arthropoda: Insects Gut Larva Unclassified Anoplophora glabripennis gut 42.28 -71.78 280968062 663502 783 145 889 0 Unrestricted 0.0 Metagenome 3300038334 *Microbiome Permanent Draft Groundwater microbial communities from Horonobe Underground Research Laboratory (URL), Japan Groundwater microbial communities from Horonobe Underground Research Laboratory (URL), Japan - horonobe_ig3399 University of California, Berkeley 3300038334 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 28350393 Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 45.045278 141.859444 308488448 377257 172 0 263 0 0.0 Metagenome 3300024462 *Microbiome Permanent Draft Permafrost microbial communities from glacier foreland in Svalbard, Norway Permafrost microbial communities from glacier foreland in Svalbard, Norway - ML312 KOREA POLAR RESEARCH INSTITUTE 3300024462 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes sarbjeet.niraula@mavs.uta.edu Sarbjeet Niraula No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 78.9060229 12.10432566 6.6 861268 2909 13 1 5 1 0.0 Metagenome 3300027542 *Microbiome Permanent Draft Mouse cecum microbial communities from Vienna, Austria Mouse cecum microbial communities from Vienna, Austria - Inoculum for glucosamine and mucus D2O microcosms (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027542 Metagenome Analysis spades v. 3.11.1 Yes Yes wagner@microbial-ecology.net; romans@mit.edu Michael Wagner; Roman Stocker No Host-associated Mammals Large intestine Digestive system Cecum Mouse cecum 48.2 16.37 448638217 677640 460 5 661 1 SRX2838880 Unrestricted 0.0 Metagenome 3300040335 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_014-M-20160802-COMP-DNA1 Battelle Memorial Institute 3300040335 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 4769466 14899 19 0 53 0 0.0 Metagenome 3300028481 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C4 DOE Joint Genome Institute (JGI) 3300028481 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Elk feces 38.04 -122.5 252128370 489674 389 62 647 84 SRX5090789, SRX5090788 Unrestricted 0.0 Metagenome 3300037520 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Jul2015-rr0143 DOE Joint Genome Institute (JGI) 3300037520 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1285107818 1952428 493 119 618 181 SRX9139776 Unrestricted 16.49 Metagenome 3300028998 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 341_B Beijing Genomics Institute (BGI) 3300028998 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 55322630 61648 30 0 33 0 ERX491093 0.0 Metagenome 3300005766 *Microbiome Permanent Draft Human lung microbial communities from healthy (non-smokers and smokers) and HIV infected subjects Human lung microbial communities from HIV infected subject HIV18-1 New York University Langone Medical Center 3300005766 Metagenome Analysis Shotgun released per JGI data release policy No Yes leopoldo.segal@nyumc.org Leopoldo N Segal No Host-associated Mammals: Human Lung Respiratory system Unclassified Lung Microbiome 40.7127 -74.0059 26982710 78935 1 2 3 0 0.0 Metagenome 3300048801 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-F1(1) 1-5 DOE Joint Genome Institute (JGI) 3300048801 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0433 272450198 470021 204 13 332 17 Restricted 14.89 Metagenome 3300035330 *Microbiome Permanent Draft Cathode biofilm microbial communities from solar microbial fuel cell (MFC) in Washington, DC, USA Cathode biofilm microbial communities from solar microbial fuel cell (MFC) in Washington, DC, USA - Sample 2 Naval Research Laboratory 3300035330 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Industrial production Unclassified Engineered product Unclassified Cathode biofilm 38.823126 -77.017947 56275066 65792 20 0 29 0 0.0 Metagenome 3300025698 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKX (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025698 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 428043704 903648 389 0 614 2 SRX2747203 Unrestricted 0.0 Metagenome 3300004291 *Microbiome Finished Recombinant microbial communities from the University of Alicante, Spain Recombinant microbial communities from the University of alicante. Spain. 2014. More 10kb 454 Life Sciences 3300004291 Metagenome Analysis 454 released per JGI data release policy No Yes pedro.gonzalez@ua.es Pedro Gonz?lez-Torres, Pedro I?aki Gonzalez Torres No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Saltern ponds 38.383458 -0.51203 6263107 5423 2 0 3 0 0.0 Metagenome 3300034095 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091 DOE Joint Genome Institute (JGI) 3300034095 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1247673223 2321132 404 61 553 116 SRX7622014 Unrestricted 11.54 Metagenome 3300003702 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial Assembly University of Michigan 3300003702 Metagenome Analysis idba_ud released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Hydrothermal vents Marine Unclassified Marine, Hydrothermal vent plume 18.55 81.716667 447841055 486844 139 2 139 2 0.0 Metagenome 3300011637 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00878 Weill Cornell Medical College 3300011637 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -73.83 32601380 43974 14 0 19 0 SRX822844 0.0 Metagenome 3300036392 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Hassallia sp. WJT32-NPBG1 and co-occurring heterotrophs from soil crust from Mojave Desert, Joshua Tree National Park, California, United States - 20190126_21 DOE Joint Genome Institute (JGI) 3300036392 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Soil crust Soil Biological Soil crust 34.0997 -115.455 22408103 25266 13 0 22 0 SRX8847457 Unrestricted 438.54 Metagenome 3300036974 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - SCT 43 I DOE Joint Genome Institute (JGI) 3300036974 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 759387925 1532241 688 105 1020 171 SRX8363297 Unrestricted 8.4 Metagenome 3300022933 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_100_MG DOE Joint Genome Institute (JGI) 3300022933 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca; shallam@interchange.ubc.ca Sean Crowe; Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5847 -123.5008 940395108 1821779 552 69 862 111 SRX4481923 Unrestricted 26.17 Metagenome 3300037839 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Freshwater microbial communities from Lake Michigan, Michigan, United State - MI_BH16_G02 metaG DOE Joint Genome Institute (JGI) 3300037839 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 42.7333 -87.0 363510885 781881 186 2 286 8 SRX9146686 Unrestricted 12.95 Metagenome 3300020498 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020498 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.099444 -89.404444 70674161 166757 68 20 116 35 SRX3310671 Unrestricted 0.0 Metagenome 3300015054 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction) DOE Joint Genome Institute (JGI) 3300015054 Metagenome Analysis metalrec/blasr v. metalrec version 1.0.2/blasr 1.3.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 870135873 1428672 460 67 727 105 SRX3049021, SRX3049022, SRX3049023, SRX3049024, SRX3049025, SRX3049026, SRX3049027, SRX3049028, SRX3049029 Unrestricted 0.0 Metagenome 3300021470 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L239-20m DOE Joint Genome Institute (JGI) 3300021470 Metagenome Analysis spades v. 3.11.1-check Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.663 -93.723 543404352 1100712 397 36 613 66 SRX3984566 Unrestricted 18.58 Metagenome 3300012052 *Microbiome Permanent Draft Norwegian Young Sea Ice 2015 - N-ICE15 Seawater microbial communities from Norwegian Young Sea Ice, Arctic Ocean, Norway, 2015 - N-ICE15, floe 3, site 2, 5m LGC Genomics 3300012052 Metagenome Analysis Ray v 2.3.1 released by JGI data releasing policy No Yes antonioggsousa@gmail.com; cmagalhaes@ciimar.up.pt Antonio Sousa; Catarina Magalh?es No Environmental Aquatic Epipelagic Marine Unclassified marine 82.383388 15.150055 1894892 8219 6 0 10 2 0.0 Metagenome 3300011186 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #430 DOE Joint Genome Institute (JGI) 3300011186 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 222498850 404432 72 43 102 80 SRX2526859 Unrestricted 0.0 Metagenome 3300013456 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100474 University of Pennsylvania 3300013456 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4536212 11779 14 1 22 4 SRX756524 0.0 Metagenome 3300006178 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 DOE Joint Genome Institute (JGI) 3300006178 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Host-associated Plants Endosphere Roots Unclassified Populus endosphere 35.8444 -83.9599 3180168906 10084096 1977 100 3517 199 SRX2748476 Unrestricted 0.0 Metagenome 3300030012 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_137 - TARA_R100000734 CEA Genoscope 3300030012 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine 14.2035 -116.6261 184770719 408582 10 0 10 0 0.0 Metagenome 3300031274 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-30 DOE Joint Genome Institute (JGI) 3300031274 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.759 -70.891 482112348 1037883 394 4 626 8 SRX5359056 Unrestricted 11.43 Metagenome 3300008105 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, sample E2014-0046-100-LTR University of Michigan 3300008105 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7635 -83.3309 9.195 585991728 840321 124 57 163 107 0.0 Metagenome 3300009708 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from China - AD_SCU001_MetaG DOE Joint Genome Institute (JGI) 3300009708 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 30.66 104.06 280853303 463410 275 0 425 3 SRX2157908 Unrestricted 0.0 Metagenome 3300039382 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 622_M Beijing Genomics Institute (BGI) 3300039382 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 131410311 184530 112 1 210 0 ERX491274 0.0 Metagenome 3300024180 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 82D DOE Joint Genome Institute (JGI) 3300024180 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 211718033 435044 148 13 210 22 SRX4474187 Unrestricted 21.87 Metagenome 3300038827 *Microbiome Permanent Draft Sheep feces microbial communities from Italy Sheep feces microbial communities from Italy - ovine3 University of Sassari 3300038827 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Sheep feces 40.596899 8.379221 10597584 25029 96 1 169 0 0.0 Metagenome 3300014611 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01347 Weill Cornell Medical College 3300014611 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.84 -73.83 34868126 45138 15 0 18 0 SRX823287 0.0 Metagenome 3300060359 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210528_01_09 DOE Joint Genome Institute (JGI) 3300060359 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 724439202 1041952 183 120 236 187 Unrestricted 24.51 Metagenome 3300043157 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_1 (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043157 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 635683705 1044148 142 2 245 1 SRX9140427 Unrestricted 36.13 Metagenome 3300036481 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C2-7A DOE Joint Genome Institute (JGI) 3300036481 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 105060422 326329 227 4 415 9 SRX8816841 Unrestricted 4.66 Metagenome 3300022672 *Microbiome Permanent Draft Carpinteria Salt Marsh Metagenomes 2014 to 2017 Sediment microbial communities from marsh intertidal zone in Carpinteria, CA, United States - S1 University of California, Irvine 3300022672 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Aquatic Intertidal zone Marine Sediment Sediment 34.401 -119.534 6751218 8203 3 0 3 0 0.0 Metagenome 3300041487 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover leaf microbial community from Lincoln, Canterbury, New Zealand - WCL17_1 MetaG AgResearch, New Zealand, Mosgeil 3300041487 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 457973146 510900 49 202 115 254 0.0 Metagenome 3300059636 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Michigan, United States - E2018-0029 DOE Joint Genome Institute (JGI) 3300059636 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.96666667 -83.51833333 2520230985 5127795 1217 502 1733 826 Unrestricted 0.0 Metagenome 3300033982 *Microbiome Permanent Draft Lab enriched peat soil microbial communities from two peatlands near Ithaca, NY, United States Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fraction DOE Joint Genome Institute (JGI) 3300033982 Metagenome Analysis spades v. 3.13.0 Yes Yes rer26@cornell.edu Ruth Richardson No Environmental Terrestrial Wetlands Soil Peat peat soil 42.5488 -76.2662 1110965569 2083921 315 8 509 10 SRX7542968 Unrestricted 14.39 Metagenome 3300025674 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes) (version 4) DOE Joint Genome Institute (JGI) 3300025674 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 38.9819 -76.3716 393211845 869209 0 0 0 0 SRX2753470, SRX5209302 Unrestricted 0.0 Metagenome 3300052896 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Colorado, USA - BV_L1_S3 DOE Joint Genome Institute (JGI) 3300052896 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 40.98927 -106.61071 300711828 511591 272 41 477 60 Unrestricted 29.52 Metagenome 3300070881 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_004-O-20200715-COMP-DNA1 Battelle Memorial Institute 3300070881 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 45.822941 -121.998707 3.92-4.35 30635072 88967 64 24 150 40 0.0 Metagenome 3300007885 *Microbiome Permanent Draft Spring water viral communities from Black Pool hot spring in the West Thumb Geyser Basin, Yellowstone National Park, WY, USA Spring water viral communities from Black Pool hot spring in the West Thumb Geyser Basin, Yellowstone National Park, WY, USA Roche Applied Science 3300007885 Metagenome Analysis CLC 8.5.1 released per JGI data release policy No Yes smonsma@me.com Scott Monsma No Environmental Aquatic Hot (42-90C) Thermal springs Alkaline planktonic 44.41822 -110.57182 7.97 2424289 4973 0 0 0 0 0.0 Metagenome 2032320008 *Microbiome Permanent Draft Dendroctonus ponderosae fungus gallery microbial communities from Grand Prairie, Alberta Dendroctonus ponderosae fungus gallery microbial communities from Grand Prairie, Alberta - MPB hybrid beetle DOE Joint Genome Institute (JGI) 2032320008 Metagenome Analysis Newbler Released on Tijana's request (11-25-2014) No Yes gsuen@wisc.edu Garret Suen Yes 25406380 Environmental Terrestrial Insects nest Nest Fungus garden/Fungus gallery Dendroctonus ponderosae fungus gallery 54.719167 -119.663611 29279222 66368 6 0 17 0 0.0 Metagenome 3300028392 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028392 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 46.8319 -72.5 556172583 1088998 222 49 346 65 SRX2524546 Unrestricted 0.0 Metagenome 3300009184 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG DOE Joint Genome Institute (JGI) 3300009184 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 48.2311 -71.2508 1053075320 2048984 662 81 1097 141 SRX2996441 Unrestricted 0.0 Metagenome 3300028974 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 241_B Beijing Genomics Institute (BGI) 3300028974 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 21425100 25031 20 0 25 0 ERX491021 0.0 Metagenome 3300008350 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 370425937 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008350 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 54671836 60899 53 0 81 0 0.0 Metagenome 3300024507 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepA_8d DOE Joint Genome Institute (JGI) 3300024507 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 197681144 420051 206 18 304 29 SRX4547357 Unrestricted 13.28 Metagenome 3300045275 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_400m_2014 DOE Joint Genome Institute (JGI) 3300045275 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 1297762739 2367018 930 3 1581 5 Unrestricted 11.03 Metagenome 3300016641 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Site 231 with 0.8UM filter J. Craig Venter Institute 3300016641 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater -68.4 78.18278 8.81 14747633 35263 34 4 49 6 0.0 Metagenome 3300013604 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100122 University of Pennsylvania 3300013604 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3500539 9819 10 0 18 0 SRX756710 0.0 Metagenome 3300039988 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_004-M-20160720-COMP-DNA1 Battelle Memorial Institute 3300039988 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 17875067 54002 81 4 147 5 0.0 Metagenome 3300047181 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2015 IH-HC-7_17cm DOE Joint Genome Institute (JGI) 3300047181 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.2151 19.0271 432256151 726743 206 2 463 2 Restricted 19.7 Metagenome 3300002130 *Microbiome Permanent Draft Wastewater microbial communities from Belvaux, Luxembourg Wastewater microbial communities from Belvaux, Luxembourg - M48 3300002130 Metagenome Analysis CLC genomics Workbench released by JGI data releasing policy Yes Yes goux@lippmann.lu, xavier.goux@list.lu Xavier Goux No Engineered Bioreactor Sludge Anaerobic Unclassified Wastewater 49.506095 5.943536 31457622 36469 9 0 18 0 0.0 Metagenome 3300043706 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - Rondonia_Forest_1_B100m DOE Joint Genome Institute (JGI) 3300043706 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Unclassified Soil -10.169 -62.782 816944283 2142178 382 4 759 6 Unrestricted 9.13 Metagenome 3300050166 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA River water microbial communities from Olympic Peninsula, Washington, USA - W_RHK1_D15 DOE Joint Genome Institute (JGI) 3300050166 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Aquatic River Freshwater Unclassified River water 48.154 -124.211 280151153 475755 187 38 270 48 Unrestricted 45.86 Metagenome 3300026827 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A4-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300026827 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 32906349 104142 121 0 241 3 SRX1991136 Unrestricted 0.0 Metagenome 3300020293 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX556092-ERR599063) CEA Genoscope 3300020293 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -12.9488 -96.0293 190407351 462172 184 5 297 6 0.0 Metagenome 3300006194 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 DOE Joint Genome Institute (JGI) 3300006194 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Host-associated Plants Rhizosphere Roots Soil Populus rhizosphere 35.8443 -83.9607 450075427 1583183 625 50 1181 92 SRX2748706, SRX2748707 Unrestricted 0.0 Metagenome 3300009000 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG DOE Joint Genome Institute (JGI) 3300009000 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Pond water 37.4972 -122.1293 528288125 1073780 471 86 772 136 SRX3203255 Unrestricted 0.0 Metagenome 3300069356 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_017-M-20160728-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069356 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 26547061 83265 129 4 285 7 0.0 Metagenome 3300042764 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N3_30_40 NMDC pilot DOE Joint Genome Institute (JGI) 3300042764 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37379502 -119.2722385 52740992 148752 146 2 315 6 SRX2523179 0.0 Metagenome 3300012139 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Florida, USA - TSFL045 MetaG DOE Joint Genome Institute (JGI) 3300012139 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 28.571 -82.2846 159652863 266893 100 99 180 186 SRX3539477 Unrestricted 0.0 Metagenome 3300020474 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX555957-ERR598976) CEA Genoscope 3300020474 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 36.139 -28.9598 1382442906 3376376 603 64 937 150 0.0 Metagenome 3300012666 *Microbiome Permanent Draft Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2 Molecular Research LP (MR DNA) 3300012666 Metagenome Analysis metaSPAdes released by JGI data releasing policy No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater, surface ice 42.6244481 -80.9227115 276240760 922227 49 9 117 10 0.0 Metagenome 3300070488 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_003-M-20200720-COMP-DNA1 Battelle Memorial Institute 3300070488 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 38.883308 -78.120371 5.41-6.1 3422485 11184 38 4 54 8 0.0 Metagenome 3300001119 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1101 DOE Joint Genome Institute (JGI) 3300001119 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 31477 97 13 0 17 1 SRX1987004 Unrestricted 0.0 Metagenome 3300070607 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone National Park, Wyoming, USA - YELL_046-M-20190820-COMP-DNA1 Battelle Memorial Institute 3300070607 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 44.952363 -110.541582 6.04-7.46 4870458 16234 76 13 153 14 0.0 Metagenome 3300027436 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A3-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300027436 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 10582528 35292 73 0 140 0 SRX1991132 Unrestricted 0.0 Metagenome 3300070991 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Marvin Klemme Range Research Station, Oklahoma, USA - OAES_003-M-20180529-COMP-DNA1 3300070991 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 19944771 57371 52 5 124 7 0.0 Metagenome 3300047578 *Microbiome Permanent Draft Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA - 1_s_sep_JRB_CZO DOE Joint Genome Institute (JGI) 3300047578 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dawsonfairbanks@email.arizona.edu Dawson Fairbanks No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.88243 -106.5341008 558427832 988297 240 8 436 19 Unrestricted 18.32 Metagenome 3300007995 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160380657 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007995 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 43033307 81512 26 0 60 0 0.0 Metagenome 3300029927 *Microbiome Permanent Draft North Pond 2012 Aquifer microbial communities from Mid-Atlantic Ridge, Atlantic Ocean - 1383C Shallow kmer 100 The Marine Biological Laboratory 3300029927 Metagenome Analysis IDBA-UD v. 1.1.2 released by JGI data releasing policy No Yes tully.bj@gmail.com; lmseyler@gmail.com Benjamin Tully; Lauren Seyler Yes 26935537 Environmental Aquatic Aquifer Marine Formation fluid marine subseafloor aquifer 22.8 -46.05 105166733 138409 129 13 167 16 0.0 Metagenome 3300003229 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO21-E DOE Joint Genome Institute (JGI) 3300003229 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 258930 840 19 3 34 7 SRX2575549 Unrestricted 0.0 Metagenome 3300060437 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210607_11_09 DOE Joint Genome Institute (JGI) 3300060437 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 727230556 1073483 307 226 409 289 Unrestricted 25.75 Metagenome 3300013900 *Microbiome Permanent Draft Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 250 Chalmers University of Technology 3300013900 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 66675936 154723 104 2 174 4 SRX193539 0.0 Metagenome 3300035039 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B3.7_Sample3.Rodeo7.Well667 DOE Joint Genome Institute (JGI) 3300035039 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 262425409 427446 278 0 387 0 SRX8353268 Unrestricted 47.43 Metagenome 3300008132 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159207311 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008132 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 189412978 266732 146 0 240 0 0.0 Metagenome 3300036888 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 20-24 DOE Joint Genome Institute (JGI) 3300036888 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 509027813 804066 156 2 240 3 SRX8138154 Unrestricted 14.17 Metagenome 3300048923 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 DOE Joint Genome Institute (JGI) 3300048923 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Unclassified Roots Unclassified Root 42.40581 -85.40228 780016746 1121199 212 57 335 87 Unrestricted 44.81 Metagenome 3300013220 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100786 University of Pennsylvania 3300013220 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 11815450 23991 11 5 23 9 SRX756068 0.0 Metagenome 3300003909 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_133SG_5_DNA DOE Joint Genome Institute (JGI) 3300003909 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 98799978 246107 183 129 295 225 Unrestricted 0.0 Metagenome 3300029207 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002666-35 Beijing Genomics Institute (BGI) 3300029207 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 120457356 144428 73 0 108 0 0.0 Metagenome 3300033892 *Microbiome Permanent Draft Hot spring microbial communities from different geyser basins in Yellowstone National Park, WY, United States Hot spring water microbial communities from Norris-Mammoth Corridor, Yellowstone National Park, WY, United States - NMC.RSE_P DOE Joint Genome Institute (JGI) 3300033892 Metagenome Analysis spades v. 3.13.0 Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Unclassified Thermal springs Unclassified hot spring water 44.7535 -110.7249 84968250 172934 56 14 80 22 SRX7584882 Unrestricted 809.56 Metagenome 3300022390 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet fungal communities from Santa Barbara, California, USA - diluted pellet 3 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022390 Metagenome Analysis spades v. 3.11.1-check Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4204 -119.6671 219732711 565719 541 5 992 5 SRX3964278 Unrestricted 140.06 Metagenome 3300040302 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONZ_002-M-20170710-COMP-DNA1 Battelle Memorial Institute 3300040302 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.10077 -96.56309 5975137 17468 58 5 100 7 0.0 Metagenome 3300038693 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Natural salt marsh sediment microbial communities from Mersea Island, United Kingdom - W MINM 2A University of York 3300038693 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Natural salt marsh sediment 51.797167 0.920967 40828726 94843 61 1 99 2 0.0 Metagenome 3300025970 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_ThreeSqA_D1 (SPAdes) DOE Joint Genome Institute (JGI) 3300025970 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.131752 -122.266335 119736411 260896 191 3 301 5 SRX7146208 Unrestricted 0.0 Metagenome 3300005721 *Microbiome Permanent Draft Honey bee gut microbial communities from Carl Hayden Bee Research Center, Tucson, Arizona, USA Honey bee gut microbiome from Carl Hayden Bee Research Center, Tucson, Arizona, USA - sample 1, colony 176 Yale University 3300005721 Metagenome Analysis Unkonwn Yes Yes nancy.moran@yale.edu, nancy.moran@austin.utexas.edu Nancy Moran, Nancy A. Moran No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Honey bee gut 32.27437126 -110.93875587 76583270 126907 26 1 47 1 0.0 Metagenome 3300005354 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG DOE Joint Genome Institute (JGI) 3300005354 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 5004807446 13273773 3341 150 5503 280 SRX2740373 Unrestricted 0.0 Metagenome 2029527007 *Microbiome Permanent Draft Dendroctonus ponderosae fungus gallery microbial communities from Grand Prairie, Alberta Dendroctonus ponderosae fungus gallery microbial communities from Grand Prairie, Alberta - Hybrid pine DOE Joint Genome Institute (JGI) 2029527007 Metagenome Analysis Newbler No Yes gsuen@wisc.edu Garret Suen Yes 25406380 Environmental Terrestrial Insects nest Nest Fungus garden/Fungus gallery Dendroctonus ponderosae fungus gallery 54.719167 -119.663611 28121448 53375 14 0 26 0 0.0 Metagenome 3300027108 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF030 (SPAdes) DOE Joint Genome Institute (JGI) 3300027108 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.209488 29485831 86758 52 4 91 5 SRX2014349 Unrestricted 0.0 Metagenome 7000000682 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765620695 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000682 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 20329097 39034 0 0 0 0 0.0 Metagenome 3300053140 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere DOE Joint Genome Institute (JGI) 3300053140 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.1214 -123.26946 992942819 1716407 417 140 611 195 Unrestricted 16.67 Metagenome 3300032373 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 2 DOE Joint Genome Institute (JGI) 3300032373 Metagenome Analysis spades v. 3.13.0 Yes Yes jbeam@bigelow.org; demerson@bigelow.org Jake Beam; David Emerson No Environmental Aquatic Coastal Marine Sediment microbial mat 43.8603 -69.5781 3044431105 6368169 1814 128 2762 250 SRX5822423 Unrestricted 54.62 Metagenome 3300039898 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_004-O-20170731-COMP-DNA1 Battelle Memorial Institute 3300039898 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 27156045 76032 80 11 179 14 0.0 Metagenome 3300026334 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_12_40cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026334 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 616037634 1111242 322 6 512 11 SRX2727835 Unrestricted 0.0 Metagenome 3300001593 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 DOE Joint Genome Institute (JGI) 3300001593 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 2121184375 5166274 1890 353 3526 677 SRX3312084 Unrestricted 0.0 Metagenome 3300040423 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_006-M-20160719-COMP-DNA1 Battelle Memorial Institute 3300040423 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 4634196 14052 24 1 43 0 0.0 Metagenome 3300003370 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 DOE Joint Genome Institute (JGI) 3300003370 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 51.62 -128.09 99582725 252741 217 71 359 147 SRX2575205 Unrestricted 0.0 Metagenome 3300029173 *Microbiome Permanent Draft Infant fecal microbial communities from Pittsburgh, USA Infant fecal microbial communities from Pittsburgh, USA - NECEvent2014_3_3 Banfield Lab, University of California, Berkeley 3300029173 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant fecal 40.4308 -79.9598 37681151 47133 65 0 63 0 0.0 Metagenome 3300014565 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 82_12M Beijing Genomics Institute (BGI) 3300014565 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 145894151 179421 81 0 89 0 ERX491311 0.0 Metagenome 3300017445 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12SEP2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017445 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 277635075 511348 145 203 192 352 SRX3926324 Unrestricted 6.87 Metagenome 3300026703 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Anaerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and E1 (SPAdes) DOE Joint Genome Institute (JGI) 3300026703 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Anaerobic enrichment media 17.967317 -67.018833 40528139 49151 49 0 54 0 SRX3311622 Unrestricted 0.0 Metagenome 3300039190 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Rauer Lake 3, Antarctica - Filla 3, #72 Australian Centre for Ecogenomics 3300039190 Metagenome Analysis Spades v. 3.12.0 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.814667 77.827333 375207832 641747 257 21 365 18 0.0 Metagenome 3300014518 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00336 Weill Cornell Medical College 3300014518 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.73 -74.0 31940886 44326 17 0 20 0 SRX822309 0.0 Metagenome 3300013379 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01156 Weill Cornell Medical College 3300013379 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.92 36803077 55519 21 0 32 0 SRX823111 0.0 Metagenome 3300070570 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Treehaven, Wisconsin, USA - TREE_003-M-20200708-COMP-DNA1 Battelle Memorial Institute 3300070570 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 45.490243 -89.577675 5.03-5.58 17894209 55997 92 13 177 27 0.0 Metagenome 3300002431 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP12-MB 3300002431 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300047480 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Golan Heights, Israel - jordanrivershai3_2019_sw_WHONDRS-S19S_0058 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047480 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 32.8993 35.6136 271831127 431061 148 5 255 11 Unrestricted 0.0 Metagenome 3300024974 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 9_HOW4 (SPAdes) DOE Joint Genome Institute (JGI) 3300024974 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 152636888 283716 86 7 122 12 SRX2720110 Unrestricted 0.0 Metagenome 3300027800 *Microbiome Permanent Draft Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - High cellulose week 8 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027800 Metagenome Analysis spades v. 3.11.1 Yes Yes rallen2@staffmail.ed.ac.uk Rosalind Allen No Environmental Aquatic Pond Freshwater Sediment Freshwater 55.9225 -3.1724 988903221 1949487 914 14 1474 25 SRX7158206 Unrestricted 0.0 Metagenome 3300070862 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_006-M-20170802-COMP-DNA1 3300070862 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 41268111 127463 90 6 188 14 0.0 Metagenome 3300026095 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026095 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 4641442695 10895205 1799 184 3295 394 SRX2790799 Unrestricted 0.0 Metagenome 3300005683 *Microbiome Permanent Draft Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia Enhanced biological phosphorus removal bioreactor viral communities from the University of Queensland, Australia - SBR4-V91802 Phage Sequencing University of Queensland 3300005683 Metagenome Analysis CLC 6.0 Released per Connor Skennerton (Sep 15, 2015) No Yes c.skennerton@gmail.com Connor Skennerton No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor lab-scale EBPR bioreactor -27.49999 153.012098 64450275 146075 9 0 20 0 0.0 Metagenome 3300050256 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_7 DOE Joint Genome Institute (JGI) 3300050256 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.6 161.083 483077067 641162 47 25 62 37 SRX18235861 Restricted 27.1 Metagenome 3300047162 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Sediment-water slurry microbial communities from hot spring in Yellowstone National Park, WY, USA - Buffalo_pool_avicel_inc_3 DOE Joint Genome Institute (JGI) 3300047162 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Sediment-water slurry 44.5324 -110.7974 185263408 293067 102 4 137 0 Restricted 585.65 Metagenome 3300022853 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #371 DOE Joint Genome Institute (JGI) 3300022853 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 128153264 252765 48 0 86 0 SRX4396796 Unrestricted 30.45 Metagenome 3300011865 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01146 Weill Cornell Medical College 3300011865 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.9 42898088 71373 24 0 40 0 SRX823101 0.0 Metagenome 3300043267 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from California, United States - Mound Spring (MOS_S1) (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043267 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Warm (34-42C) Thermal springs Unclassified Desert spring 37.0233 -117.3845 6.89 439929230 636910 217 4 366 7 SRX9166659 Unrestricted 28.53 Metagenome 3300028507 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 1 Selected contigs with viral hallmark genes 2 Autonomous University of Barcelona 3300028507 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 889371 1414 0 0 0 0 0.0 Metagenome 3300020315 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000405 (ERX555948-ERR598972) CEA Genoscope 3300020315 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -29.5123 37.8586 222322702 560279 404 34 615 67 0.0 Metagenome 3300000483 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil ZC3D30 University of Sao Paulo 3300000483 Metagenome Analysis Newbler released per PI's request No Yes almsilva@iq.usp.br Aline Maria da Silva Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651079 -46.620668 16023538 28427 57 4 117 3 0.0 Metagenome 3300042913 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-337 Genome Quebec 3300042913 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.410038 -119.585408 1507026836 3366648 672 153 1028 281 0.0 Metagenome 3300029085 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 137_4M Beijing Genomics Institute (BGI) 3300029085 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 38203885 46603 24 0 31 0 ERX490953 0.0 Metagenome 3300025309 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado, USA - Groundwater C2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025309 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 26083755 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.55 -107.97 1062417705 1771357 884 6 1452 11 SRX764827, SRX1668234 Unrestricted 0.0 Metagenome 3300020368 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001027 (ERX556049-ERR599093) CEA Genoscope 3300020368 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -25.8126 -111.7386 471002972 1247427 320 34 509 66 0.0 Metagenome 3300011818 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01079 Weill Cornell Medical College 3300011818 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.97 36532759 60689 19 0 29 0 SRX823034 0.0 Metagenome 3300049503 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MC6 DOE Joint Genome Institute (JGI) 3300049503 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 30977293 78012 155 5 325 9 Unrestricted 21.51 Metagenome 3300025591 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA2M (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025591 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu; shaomei.he@gmail.com Katherine McMahon; Shaomei He No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 292485051 613938 260 74 408 103 SRX2565139 Unrestricted 0.0 Metagenome 3300071077 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_003-M-20210301-COMP-DNA1 3300071077 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 26886 96 3 0 7 0 0.0 Metagenome 3300045781 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - G2-R1-A DOE Joint Genome Institute (JGI) 3300045781 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3569 19.0504 578186571 1153264 294 59 476 102 Unrestricted 8.55 Metagenome 3300011122 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, total Toyama Prefectural University 3300011122 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Sediment marine 37.035 137.41472 18470177 46472 27 2 55 4 0.0 Metagenome 3300009698 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG DOE Joint Genome Institute (JGI) 3300009698 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes loy@microbial-ecology.net; Michael.Pester@dsmz.de Alexander Loy; Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.1318 11.881 1385319768 2587301 341 5 502 8 Unrestricted 0.0 Metagenome 3300002838 *Microbiome Permanent Draft Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland, that are sulfate-reducing Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland - DEFAULT SAMPLE 3300002838 Metagenome Analysis Ray, k=41 released by JGI data releasing policy No Yes rizlan.bernier-latmani@epfl.ch Rizlan Bernier-Latmani No Environmental Terrestrial Clay Deep subsurface Unclassified Deep subsurface 47.379 7.1648 7.5-8.5 101737461 212665 86 8 157 22 0.0 Metagenome 3300013778 *Microbiome Permanent Draft Marine Prochlorococcus and Synechococcus communites from Sargasso sea and California currents Marine microbial communites from Sargasso Sea - Synechococcus B261 80m rep 1 UCI 3300013778 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 1378507 5589 3 4 7 4 SRX379271 0.0 Metagenome 3300013212 *Microbiome Permanent Draft Freshwater microbial communities from Saiful Muluk Lake, Pakistan Freshwater microbial communities from Saiful Muluk Lake, Pakistan BGI Tech Solutions Co., Ltd. 3300013212 Metagenome Analysis megahit released by JGI data releasing policy No Yes faizansaleem1992@gmail.com faizan saleem No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.8762 73.6934 51032191 65308 44 4 81 7 0.0 Metagenome 3300001427 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 415-2 shallow-092012 DOE Joint Genome Institute (JGI) 3300001427 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 60954226 134715 105 8 178 13 SRX1987675 Unrestricted 0.0 Metagenome 3300044923 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_6_D DOE Joint Genome Institute (JGI) 3300044923 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 160384553 206006 106 1 126 1 Unrestricted 85.29 Metagenome 3300039326 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P4_D5 DOE Joint Genome Institute (JGI) 3300039326 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 853079985 1194538 214 3 286 4 SRX9635387 Unrestricted 31.42 Metagenome 3300029766 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 009_6_3_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029766 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 204973145 247643 155 0 227 0 0.0 Metagenome 3300054559 *Microbiome Permanent Draft Soil microbial communities from pasture in Hopland Research and Extension Center, CA, USA Soil viral communities from pasture in Hopland Research and Extension Center, CA, USA - T2-H218O-A library kit 1SPlus DOE Joint Genome Institute (JGI) 3300054559 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes trubl1@llnl.gov Gareth Trubl No Environmental Terrestrial Pasture Soil Unclassified Soil 39.00177 -123.06967 84163149 223598 41 0 86 3 Unrestricted 251.23 Metagenome 3300034146 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 60SNS DOE Joint Genome Institute (JGI) 3300034146 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Sub-biocrust Soil Unclassified sub-biocrust soil 34.3778 -117.6098 289068292 712476 546 22 955 45 SRX7621502 Unrestricted 8.69 Metagenome 3300025708 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025708 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 41.53 -90.43 593941200 997008 418 0 642 1 SRX2157891 Unrestricted 0.0 Metagenome 3300030329 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_125 - TARA_R100000808 CEA Genoscope 3300030329 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -8.8999 -142.5461 212311892 418265 33 0 49 0 0.0 Metagenome 3300064937 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 740 in Bashaw, Alberta, Canada - S00JY_0108 Microbiome Insights 3300064937 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.40477497 -112.5728765 13700568 21333 18 0 32 0 0.0 Metagenome 3300042479 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME01Mar2019-rr0705 DOE Joint Genome Institute (JGI) 3300042479 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 674388060 1075527 251 69 306 79 Unrestricted 18.87 Metagenome 3300041774 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from the Rocky Mountain Biological Laboratory (RMBL), Gothic, Colorado, United States - 2009WM_1C DOE Joint Genome Institute (JGI) 3300041774 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9595 -106.99 121726629 379164 239 21 483 34 SRX14810952 Unrestricted 7.42 Metagenome 3300011411 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ017 MetaG DOE Joint Genome Institute (JGI) 3300011411 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.778 -74.6307 270785387 550820 204 32 340 48 SRX3539450 Unrestricted 0.0 Metagenome 3300011676 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00400 Weill Cornell Medical College 3300011676 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -73.95 21021880 29051 9 0 22 3 SRX822371 0.0 Metagenome 3300042541 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Mar2015-rd0167 DOE Joint Genome Institute (JGI) 3300042541 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 987504807 1429465 245 96 334 113 Unrestricted 18.6 Metagenome 3300006407 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2 of subject 158802708 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006407 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 6223633 12439 6 0 18 0 0.0 Metagenome 3300057306 *Microbiome Permanent Draft Lake microbial communities from Canada Sediment microbial communities from the Atlantic Maritime Ecozone, Canada - top sediment 07-025 metaSPAdes Genome Quebec 3300057306 Metagenome Analysis SPAdes v. 3.11.1 metaSPAdes mode Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Sediment 43.6497 -65.7118 1103624657 3193828 499 9 1043 17 0.0 Metagenome 7000000661 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 159490532 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000661 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 106091209 155837 0 0 0 0 0.0 Metagenome 2044078015 *Microbiome Permanent Draft Wastewater treatment microbial communities from EBPR bioreactor at Univ of Illinois, Urbana Champaign, that are accumulating glycogen and are tetrad forming Tetrad forming microbial communities from wastewater bioreactor at Univ of Illinois, Urbana Champaign: Sample 369 University of Illinois, Urbana-Champaign 2044078015 Metagenome Analysis Newbler released per JGI data release policy No Yes t.hideyuki@gmail.com Hideyuki Tamaki No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Wastewater treatment 40.114101 -88.227124 51515621 132544 49 0 94 0 0.0 Metagenome 3300007121 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 158944319 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007121 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 108893723 159318 101 0 111 1 0.0 Metagenome 3300006870 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA DOE Joint Genome Institute (JGI) 3300006870 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 977031883 2697762 761 289 1313 514 SRX2888119 Unrestricted 0.0 Metagenome 3300021056 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_0mM DOE Joint Genome Institute (JGI) 3300021056 Metagenome Analysis spades v. 3.10.1 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 101136936 101242 22 1 31 5 SRX4010640 Unrestricted 54.86 Metagenome 3300007773 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763982056 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007773 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 24312456 50051 23 0 53 0 0.0 Metagenome 3300025184 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP2158 (SPAdes) DOE Joint Genome Institute (JGI) 3300025184 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 12.0 -108.06 43306442 86000 55 21 100 35 SRX1982227 Unrestricted 0.0 Metagenome 3300006562 *Microbiome Finished Investigation of Black Sea water bacterial metagenome Marine microbial communities from the Black Sea in Odessa region - Od_2 Hellenic Centre for Marine Research (HCMR) 3300006562 Metagenome Analysis idba_hybrid Released per Oleksandra Bobrova (Nov 20, 2015) No Yes o.bobrova@onu.edu.ua Aleksandra Bobrova No Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Marine 46.302094 30.668915 7.5 31351919 105939 15 8 40 44 0.0 Metagenome 3300056656 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.20C.14 SIP fraction DOE Joint Genome Institute (JGI) 3300056656 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 297058771 501730 101 67 169 94 Unrestricted 10.55 Metagenome 3300004059 *Microbiome Permanent Draft Oil sludge microbial communities from Kazan, Tatarstan Republic, Russia Oil sludge microbial communities from Kazan, Tatarstan Republic, Russia-Industrial hydrocarbon sludge5 Kazan Federal University 3300004059 Metagenome Analysis Velvet released per JGI data release policy No Yes boulygina@gmail.com Evgenia Boulygina, Eugenia Boulygina No Engineered Wastewater Unclassified Industrial wastewater Unclassified Oil sludge 55.860572 48.996319 0 0 0 0 0 0 0.0 Metagenome 3300044687 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - COA1D DOE Joint Genome Institute (JGI) 3300044687 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 822515529 1509535 405 13 804 17 Unrestricted 17.64 Metagenome 3300046314 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_73 DOE Joint Genome Institute (JGI) 3300046314 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9236 -106.9499 440169613 1104400 1042 216 1951 324 Restricted 0.0 Metagenome 3300037752 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_070717_65_v DOE Joint Genome Institute (JGI) 3300037752 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 1908201773 3016234 606 8 960 8 SRX9162485 Unrestricted 14.63 Metagenome 3300013794 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS881 IDBA reassembly Marine Biological Laboratory 3300013794 Metagenome Analysis reassembly by IDBA-UD released by JGI data releasing policy No Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow diffuse flow hydrothermal vent 18.375 -81.797 121538689 229326 162 3 237 4 0.0 Metagenome 3300043696 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - Rondonia_Pasture_2_C100m DOE Joint Genome Institute (JGI) 3300043696 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.17 -62.833 516278497 1431548 436 6 833 5 Unrestricted 7.78 Metagenome 3300003079 *Microbiome Permanent Draft Acid mine drainage microbial communities from Carnoules, Gard, France Acid Mine Drainage microbial communities from Carnoules, Gard, France, bin 1 CEA Genoscope 3300003079 Metagenome Analysis Made public because these are downloaded from Genbank No Yes ipagani@lbl.gov Pelletier,E., Ionna Pagani No Environmental Aquatic Groundwater Freshwater Contaminated Acid mine drainage 43.303 6.188 2539671 2588 1 0 1 0 0.0 Metagenome 3300009674 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC085_MetaG DOE Joint Genome Institute (JGI) 3300009674 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 39.88 -75.22 852550061 1486559 916 5 1393 8 SRX2157907 Unrestricted 0.0 Metagenome 3300014050 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier in Georgia, USA Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007B Georgia Institute of Technology 3300014050 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater 34.21 -83.96 328740357 635509 93 9 152 11 SRX331703 0.0 Metagenome 3300033926 *Microbiome Permanent Draft Deception Metagenome Fumarole sediment microbial communities from Fumarole Bay, Deception Island, Antarctica - FBA2 The Brazilian National Council for Scientific and Technological Development (CNPq) 3300033926 Metagenome Analysis IDBA-ud v. 1.1.1 released per Amanda Bendia -- GOLD-1013 No Yes amandagbendia@gmail.com Amanda Bendia No Environmental Aquatic Volcanic Marine Unclassified fumarole sediment -62.96 -60.71 22427324 28442 2 0 10 1 0.0 Metagenome 3300044669 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2E DOE Joint Genome Institute (JGI) 3300044669 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Unclassified Roots Unclassified Root 14.75 -16.85 953684448 1438581 31 42 46 69 Unrestricted 28.94 Metagenome 3300032264 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Catalina island, California, United States - Pyrrhotite DOE Joint Genome Institute (JGI) 3300032264 Metagenome Analysis spades v. 3.13.0 Yes Yes jbeam@bigelow.org; demerson@bigelow.org Jake Beam; David Emerson No Environmental Aquatic Coastal Marine Sediment microbial mat 33.445 -118.4843 2969519 4493 15 0 11 0 SRX5822402 Unrestricted 11964.03 Metagenome 3300025000 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado, USA - Groundwater E1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025000 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 26083755 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.53 -107.78 179814297 317936 123 3 162 11 SRX764830, SRX1668436 Unrestricted 0.0 Metagenome 3300043143 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8NP15 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043143 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 116865459 260868 152 5 234 6 SRX8379639 Unrestricted 19.84 Metagenome 3300017934 *Microbiome Permanent Draft Coastal wetland sediment microbial communities from the Mid-Atlantic and Southeast Atlantic Coast of USA, responding to salinity intrusion. Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3 DOE Joint Genome Institute (JGI) 3300017934 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Freshwater sediment 35.9061 -76.1569 742617980 1553627 551 5 896 6 SRX4367125 Unrestricted 5.48 Metagenome 3300040770 *Microbiome Permanent Draft Cryoconite microbiome from cyroconite holes in Resolute Bay, NU, Canada Cryoconite microbial community from Resolute Bay, Canada - FullCryo HiSeq hybrid McGill University 3300040770 Metagenome Analysis hybridSPADES v. 3.13.0 released by Catherine Maggiori No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Aquatic Sea ice Marine Cryoconite Cryoconite 74.44707 -95.0348 276349668 399064 58 44 101 57 0.0 Metagenome 3300041798 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - C_35_wk_3 DOE Joint Genome Institute (JGI) 3300041798 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9936 -107.068 300773920 825409 296 8 578 19 SRX14808374 Unrestricted 6.72 Metagenome 3300022460 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL3WBGP2 JM62 AGRF 3300022460 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996531 115.533257 59853604 105026 53 2 67 4 0.0 Metagenome 3300021588 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4869-18-2-3_MG DOE Joint Genome Institute (JGI) 3300021588 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.0074 -110.591 95272852 208464 110 0 245 2 Unrestricted 10.39 Metagenome 3300044801 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Soil microbial communities from peatland in Alberta, Canada - SB-NH 70-80 cm DOE Joint Genome Institute (JGI) 3300044801 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4768 -114.8775 479939137 652970 122 1 151 0 Unrestricted 31.21 Metagenome 3300069479 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_044-M-20170802-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069479 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 25411518 81321 80 2 165 4 0.0 Metagenome 3300056749 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - APS1_2C_T0 DOE Joint Genome Institute (JGI) 3300056749 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 1952496874 2615717 639 100 844 137 Unrestricted 24.19 Metagenome 3300069541 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Taiga, AK, USA - HEAL_011-O-20170726-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069541 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.87569 -149.21334 81923660 232287 122 3 257 7 0.0 Metagenome 3300024998 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_1000_biof (SPAdes) DOE Joint Genome Institute (JGI) 3300024998 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 350228177 459430 102 123 100 14 SRX2867382, SRX2867383 Unrestricted 0.0 Metagenome 3300017630 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - BS11-05 University of Michigan 3300017630 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.42421 -85.85677 14715573 23740 8 0 6 0 0.0 Metagenome 3300028462 *Microbiome Permanent Draft Water-rock integrations support subglacial chemolithoautotrophy Glacial sediment microbial communities from Mount Robertson Glacier, Canada - Rob09 University of Minnesota 3300028462 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy No Yes trinityh@umn.edu Trinity Hamilton No Environmental Aquatic Ice Freshwater Glacier Glacier outflow sediment 50.760833 -115.333333 154768660 178669 48 0 62 0 0.0 Metagenome 3300008627 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 2.7-0.2um Georgia Genomics Facility 3300008627 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 595976828 761993 295 1 369 0 0.0 Metagenome 3300037512 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_01 (version 2) DOE Joint Genome Institute (JGI) 3300037512 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -19.6574 146.8351 1487806717 2348470 1324 25 2042 22 SRX5345260, SRX7705999 Unrestricted 0.0 Metagenome 3300038703 *Microbiome Permanent Draft Mine wastewater microbial communities from active nickel and copper mine in Ontario, Canada Mine wastewater microbial communities from active nickel and copper mine in Ontario, Canada - Enrichment_3 Banfield Lab, University of California, Berkeley 3300038703 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Mine water Industrial wastewater Unclassified mine wastewater 46.983333 -81.533333 19874839 22729 4 0 7 0 0.0 Metagenome 3300005927 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIREN14 DOE Joint Genome Institute (JGI) 3300005927 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli, Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake enrichment -68.5563 78.1877 45224989 123393 64 0 133 1 SRX2747289 Unrestricted 0.0 Metagenome 3300028004 *Microbiome Permanent Draft Soil microbial communities from hillslopes of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 2-2-W_N DOE Joint Genome Institute (JGI) 3300028004 Metagenome Analysis spades v. 3.11.1 Yes Yes laurameredith@email.arizona.edu Laura Meredith No Engineered Artificial ecosystem Soil Mesocosm Unclassified soil 32.5789 -110.8512 60097731 142168 82 0 93 0 SRX5245795 Unrestricted 141.1 Metagenome 3300007639 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1449C-02 DOE Joint Genome Institute (JGI) 3300007639 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2327 -123.9168 356712988 720199 323 18 607 23 SRX2753619 Unrestricted 0.0 Metagenome 3300021171 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M DOE Joint Genome Institute (JGI) 3300021171 Metagenome Analysis spades v. 3.10.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 2564630788 5324421 673 54 1163 93 SRX4029110 Unrestricted 14.44 Metagenome 7000000626 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 764042746 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000626 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 89637381 141337 0 0 0 0 0.0 Metagenome 3300008291 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 158337416 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008291 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 594039 1688 4 0 8 0 SRX022972, SRX022973 0.0 Metagenome 3300041501 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_7 MetaG AgResearch, New Zealand, Mosgeil 3300041501 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Unclassified Roots Unclassified White clover root -43.648506 172.343549 572311137 1209442 145 19 480 52 0.0 Metagenome 3300043031 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B6.3_Sample6.Rodeo3.Well662 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043031 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 23012107 37378 21 0 34 0 SRX8356084 Unrestricted 498.89 Metagenome 3300045025 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Plains ecozone, Canada - Lake 04-614 Genome Quebec 3300045025 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 60.53671 -114.568217 1550419266 3676219 890 125 1696 228 0.0 Metagenome 7000000172 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 160765029 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000172 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 173424013 279700 0 0 0 0 0.0 Metagenome 3300070797 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountains, Colorado, USA - RMNP_044-O-20170807-COMP-DNA1 3300070797 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 18159847 53102 64 9 81 6 0.0 Metagenome 3300027477 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10.2A4w-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300027477 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 27955499 94969 98 2 161 5 SRX2576239 Unrestricted 0.0 Metagenome 3300018476 *Microbiome Permanent Draft Populus soil microbial communities from riparian zone of different river systems in the western United States Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T DOE Joint Genome Institute (JGI) 3300018476 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jen.schweitzer@utk.edu Jennifer Schweitzer No Environmental Terrestrial Riparian zone Soil Unclassified soil 45.6356 -110.571 5578461651 12645043 3293 96 5509 198 SRX3901438 Unrestricted 5.99 Metagenome 3300009970 *Microbiome Permanent Draft Deep sea sediment microbial communities from the Gulf of Mexico Deep sea sediment microbial communities from the Gulf of Mexico - control with no oil added >4.5kb University of Texas, Austin 3300009970 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes derdner@utexas.edu; hernando.bacosa@utexas.edu Deana Erdner; Hernando Bacosa No Environmental Aquatic Sediment Marine Unclassified sediment 28.0 -88.0 6014010 6611 4 0 3 0 0.0 Metagenome 3300020042 *Microbiome Permanent Draft Freshwater viral communities from Chicago Sanitary Ship Canal, USA Freshwater viral communities from Lake Michigan, Illinois, USA - 1 University of Illinois-Urbana Champaign 3300020042 Metagenome Analysis SPADES v3.10.1 released by JGI data releasing policy No Yes wtliu@illinois.edu Wen-Tso Liu No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.925 -87.6083333 343139195 660574 2 1 3 2 0.0 Metagenome 3300029354 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 047_3_9_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029354 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 205705503 240020 246 0 302 0 0.0 Metagenome 3300004105 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/10/14 0.2 um filter (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300004105 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu, jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield, Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 445606306 974101 1112 14 1825 31 SRX2770556 Unrestricted 0.0 Metagenome 3300000288 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM275 Beijing Genomics Institute (BGI), Macrogen 3300000288 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 61270776 75567 285 0 426 0 0.0 Metagenome 3300039361 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 224_M Beijing Genomics Institute (BGI) 3300039361 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 137428771 205633 117 0 235 0 ERX491006 0.0 Metagenome 3300029721 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35389R1 Beijing Genomics Institute (BGI) 3300029721 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 84341731 100428 68 0 112 0 0.0 Metagenome 3300038451 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - Aug2018WEW_P20_D10 DOE Joint Genome Institute (JGI) 3300038451 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 928802327 1281003 348 0 463 0 SRX9472194 Unrestricted 42.41 Metagenome 3300028464 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_15MAY2017_LD1 DOE Joint Genome Institute (JGI) 3300028464 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 32614562 61317 10 29 5 34 SRX5345732 Unrestricted 44.03 Metagenome 3300001163 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 DOE Joint Genome Institute (JGI) 3300001163 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 4197416 12955 53 8 89 5 SRX3311910 Unrestricted 0.0 Metagenome 3300002207 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - site 2 B7 DOE Joint Genome Institute (JGI) 3300002207 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes rmkelly@ncsu.edu Robert Kelly No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6102 -110.4387 2602104 2832 2 0 1 0 SRX7118911, SRX7118910 Unrestricted 0.0 Metagenome 3300040257 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Woodworth, Northern Plains, ND, USA - WOOD_043-M-20170711-COMP-DNA1 Battelle Memorial Institute 3300040257 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12823 -99.24136 8076267 23083 32 2 73 4 0.0 Metagenome 3300028002 *Microbiome Permanent Draft Soil microbial communities from hillslopes of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-4-E_N DOE Joint Genome Institute (JGI) 3300028002 Metagenome Analysis spades v. 3.11.1 Yes Yes laurameredith@email.arizona.edu Laura Meredith No Engineered Artificial ecosystem Soil Mesocosm Unclassified soil 32.5788 -110.8509 8925032 26521 16 0 21 0 SRX5245792 Unrestricted 402.82 Metagenome 3300037514 *Microbiome Permanent Draft Understanding the reciprocal impacts of modified plant cell wall and associated microbiome Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-Control-R3 DOE Joint Genome Institute (JGI) 3300037514 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kalluriudayc@ornl.gov Udaya C. Kalluri No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 32.1348 -81.9657 458070047 445679 34 63 32 55 SRX9100404 Unrestricted 0.0 Metagenome 3300002927 *Microbiome Permanent Draft Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease - 2012_LB_H21 3300002927 Metagenome Analysis IDBA-UD + SOAPdenovo + GAA made public per user request (Enrique Zozaya - 05/02/16 email) No Yes t.thomas@unsw.edu.au Torsten Thomas Yes 28419766 Host-associated Algae Unclassified Red algae Unclassified Delisea pulchra -33.57 150.15 1008368351 4073866 196 107 474 174 0.0 Metagenome 3300010396 *Microbiome Permanent Draft Terrestrial soil microbial communities with and without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2 DOE Joint Genome Institute (JGI) 3300010396 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tiedjej@msu.edu James Tiedje No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 42.3938 -85.3708 4926577115 10004743 3138 371 5072 592 SRX3295567 Unrestricted 0.0 Metagenome 3300033170 *Microbiome Permanent Draft Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_12_05 R1 DOE Joint Genome Institute (JGI) 3300033170 Metagenome Analysis spades v. 3.13.0 Yes Yes ziels@mail.ubc.ca Ryan Ziels Yes 35477253 Engineered Bioreactor Unclassified Anaerobic Unclassified sludge 51.9691 5.6654 576157768 861411 518 0 694 3 SRX7542598 Unrestricted 43.3 Metagenome 3300012911 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2 DOE Joint Genome Institute (JGI) 3300012911 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Soil Agricultural land soil 43.3 -89.38 732321462 1839383 698 13 1295 24 SRX3298487 Unrestricted 4.13 Metagenome 3300003816 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jul07 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003816 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 3018365 9076 7 7 22 14 SRX2565358 Unrestricted 0.0 Metagenome 3300034150 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17 DOE Joint Genome Institute (JGI) 3300034150 Metagenome Analysis metaspades v. 3.13.0 Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Aquatic Sediment Floodplain Unclassified sediment 38.9229 -106.9499 434356076 1075997 348 14 634 25 SRX7630816 Unrestricted 6.52 Metagenome 3300029352 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 008_6_9_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029352 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 112672262 125356 69 0 118 0 0.0 Metagenome 3300007038 *Microbiome Permanent Draft Non-marine hypersaline water viral communities from Salinas de Anana, Spain Non-marine hypersaline water viral communities from A?ana, Logro?o, Spain -Vir_A?ana_balsa_PRE University of Alicante 3300007038 Metagenome Analysis IDBA 1.1.1 PRE correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline water 42.80111387 -2.985507 45734571 115497 12 0 18 0 0.0 Metagenome 3300020044 *Microbiome Permanent Draft Freshwater viral communities from Chicago Sanitary Ship Canal, USA Freshwater viral communities from Mississippi river, Illinois, USA - 1 University of Illinois-Urbana Champaign 3300020044 Metagenome Analysis SPADES v3.10.1 released by JGI data releasing policy No Yes wtliu@illinois.edu Wen-Tso Liu No Environmental Aquatic River Freshwater Unclassified Freshwater 41.509165 -90.513055 631584980 1411661 1 0 2 0 0.0 Metagenome 7000000174 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 765094712 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000174 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 51955538 96752 0 0 0 0 0.0 Metagenome 3300052924 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_CL_007D DOE Joint Genome Institute (JGI) 3300052924 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0518 10.4554 462632871 1207537 438 12 808 11 Unrestricted 8.5 Metagenome 3300014921 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 591_4M Beijing Genomics Institute (BGI) 3300014921 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 58669185 69850 26 0 48 0 ERX491252 0.0 Metagenome 3300000129 *Microbiome Draft Marine microbial communities from chronically polluted sediments in four geographic locations Marine microbial communities from chronically polluted sediments in Antarctica - King George Island site S2 sample ANT 04_23.45m DOE Joint Genome Institute (JGI) 3300000129 Metagenome Analysis released based on JGI ITS Yes Yes hdionisi@cenpat.edu.ar Hebe Dionisi Yes 28702706 Environmental Aquatic Intertidal zone Marine Sediment Marine -62.231932 -58.655087 282842295 662193 467 25 873 46 Unrestricted 0.0 Metagenome 3300025182 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0739 (SPAdes) DOE Joint Genome Institute (JGI) 3300025182 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -31.81 6.84 19122583 41143 38 14 59 18 SRX1982939 Unrestricted 0.0 Metagenome 3300006564 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 404239096 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006564 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 154661486 216963 139 0 161 0 0.0 Metagenome 3300013792 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS856 IDBA reassembly Marine Biological Laboratory 3300013792 Metagenome Analysis reassembled with IDBA_UD released by JGI data releasing policy No Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow marine hydrothermal vent 6.66 107626372 198204 124 2 184 0 0.0 Metagenome 3300035531 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B1.7_Sample1.Rodeo7.Well665 DOE Joint Genome Institute (JGI) 3300035531 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 297598463 482684 290 0 399 0 SRX8349050 Unrestricted 46.72 Metagenome 3300009672 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG DOE Joint Genome Institute (JGI) 3300009672 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes loy@microbial-ecology.net; Michael.Pester@dsmz.de Alexander Loy; Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.1318 11.881 794668391 1481180 290 3 450 5 Unrestricted 0.0 Metagenome 3300038858 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Natural salt marsh sediment microbial communities from Fingringhoe Range, United Kingdom - S FRNM 3A University of York 3300038858 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Natural salt marsh sediment 51.831817 0.9687 92327588 241482 134 0 238 0 0.0 Metagenome 3300014201 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin23_10_metaG DOE Joint Genome Institute (JGI) 3300014201 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1925888078 3740569 985 83 1664 156 SRX3293883 Unrestricted 5.73 Metagenome 3300056589 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Oak Ridge, Tennessee, USA - walkerbranch_2019_sed_WHONDRS-S19S_0019 DOE Joint Genome Institute (JGI) 3300056589 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 35.9563807 -84.278999 1076232722 2494903 535 12 1072 11 Restricted 0.0 Metagenome 3300001776 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from the Cayman Rise, Cayman Islands Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Vondamm Supr47 3300001776 Metagenome Analysis IDBA_UD k52-k92 step10 released by JGI data releasing policy No Yes Gregory Dick, Sunit Jain No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 18.35 -81.85 150644035 219986 194 3 330 5 0.0 Metagenome 3300001931 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Polynesia - GS045 J. Craig Venter Institute (JCVI) 3300001931 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Oceanic Marine Unclassified Marine -9.0175 -127.76722 636185 1152 2 0 2 0 0.0 Metagenome 3300044948 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater bacterial communities from Lake Mendota, Wisconsin, United States - ME_2020-07-24_15m_Bacteria_A DOE Joint Genome Institute (JGI) 3300044948 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 850363307 1254146 310 15 411 29 Unrestricted 19.38 Metagenome 3300027761 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - As.Sf.rz (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027761 Metagenome Analysis spades v. 3.11.1 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.7658 -100.163 527623780 1478133 601 77 1222 125 SRX2122696 Unrestricted 0.0 Metagenome 3300037321 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Weddell Lake #16 DOE Joint Genome Institute (JGI) 3300037321 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5505 78.1092 451770826 869581 235 81 307 124 SRX9173353 Unrestricted 16.92 Metagenome 3300046312 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_67 DOE Joint Genome Institute (JGI) 3300046312 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9703 -106.997 825415838 1530612 931 274 1815 390 Restricted 0.0 Metagenome 3300025251 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025251 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 43.29 8.1 235643746 468744 75 0 84 0 SRX2753836 Unrestricted 0.0 Metagenome 3300070533 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Arizona, USA - SRER_053-M-20190806-COMP-DNA1 Battelle Memorial Institute 3300070533 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.909824 -110.835912 8.66-8.76 6767351 20933 35 6 82 5 0.0 Metagenome 3300047307 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lena River, Sakha Republic, Russia - Lena 2005-3 DOE Joint Genome Institute (JGI) 3300047307 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 66.7666 123.3666 303165515 728412 383 105 656 198 Unrestricted 17.49 Metagenome 3300017932 *Microbiome Permanent Draft Coastal wetland sediment microbial communities from the Mid-Atlantic and Southeast Atlantic Coast of USA, responding to salinity intrusion. Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4 DOE Joint Genome Institute (JGI) 3300017932 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Freshwater sediment 35.9061 -76.1569 681556839 1442775 411 9 707 20 SRX4367388 Unrestricted 6.05 Metagenome 3300050375 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BT18-03_D100 (version 3) DOE Joint Genome Institute (JGI) 3300050375 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3555 19.0492 238332937 378017 94 16 126 14 Restricted 0.0 Metagenome 3300032262 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Coastal sediment microbial communities from Maine, United States - Cross River sediment 1 DOE Joint Genome Institute (JGI) 3300032262 Metagenome Analysis spades v. 3.13.0 Yes Yes jbeam@bigelow.org; demerson@bigelow.org Jake Beam; David Emerson No Environmental Aquatic Coastal Marine Sediment sediment 43.917 -69.6219 2265813467 5262817 1467 21 2597 45 SRX5822354 Unrestricted 8.58 Metagenome 2065487014 *Microbiome Permanent Draft Fungus garden microbial community from termites in South Africa Fungus garden microbial communities from termites in South Africa - Oerleman's Farm DOE Joint Genome Institute (JGI) 2065487014 Metagenome Analysis Newbler Released on Tijana's request (11-25-2014) No Yes gsuen@wisc.edu Garret Suen Yes 25406380 Environmental Terrestrial Insects nest Nest Fungus garden/Fungus gallery fungus garden -24.675 28.79722 16028606 23108 9 0 28 0 0.0 Metagenome 3300021349 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L227-6m DOE Joint Genome Institute (JGI) 3300021349 Metagenome Analysis spades v. 3.11.1-check Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.688 -93.689 646257821 1354804 617 36 1085 47 SRX3984567 Unrestricted 16.87 Metagenome 3300050240 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Butler, South Dakota, USA - 104_891_SD_DR_1m_c2_T1_18O DOE Joint Genome Institute (JGI) 3300050240 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 45.27223 -97.8369 1570131240 2291053 510 19 740 26 Restricted 17.03 Metagenome 3300003333 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Oklahoma, USA - DC3-110 DOE Joint Genome Institute (JGI) 3300003333 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 2897329 8873 19 6 19 23 SRX2770436 Unrestricted 0.0 Metagenome 3300025460 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_16_150 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025460 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 231793962 437355 120 3 178 6 SRX3006650 Unrestricted 0.0 Metagenome 3300012543 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00595 Weill Cornell Medical College 3300012543 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.72 -73.99 12171315 15771 8 0 16 0 SRX822562 0.0 Metagenome 3300059599 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M1L_50_52 DOE Joint Genome Institute (JGI) 3300059599 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0036317 -81.5659748 1351115746 2235763 700 1 1210 0 Unrestricted 12.37 Metagenome 3300041413 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 DOE Joint Genome Institute (JGI) 3300041413 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.8942 -103.685 861174445 2155772 852 96 1472 172 SRX14829414 Unrestricted 7.59 Metagenome 3300029130 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019828-35 Beijing Genomics Institute (BGI) 3300029130 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 179023854 239461 143 0 208 0 0.0 Metagenome 3300013214 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100413 University of Pennsylvania 3300013214 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 42685695 81293 19 0 36 0 SRX756585 0.0 Metagenome 3300008551 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 158802708 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008551 Metagenome Analysis SPADES 3.6.1 released per Rekha Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 187120648 251544 150 0 241 0 0.0 Metagenome 3300005838 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_130m_DNA DOE Joint Genome Institute (JGI) 3300005838 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 871069683 2115958 671 10 1138 17 SRX2575219 Unrestricted 0.0 Metagenome 3300044760 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_3 DOE Joint Genome Institute (JGI) 3300044760 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 924004927 2180469 749 9 1414 9 Unrestricted 8.6 Metagenome 2088090009 *Microbiome Permanent Draft Freshwater sediment microbial communities from Lake Washington, Seattle, USA, for methane and nitrogen cycles Freshwater sediment microbial communities from Lake Washington, Seattle, for methane and nitrogen Cycles - SIP 13C-methane anaerobic+nitrate v1 DOE Joint Genome Institute (JGI) 2088090009 Metagenome Analysis Newbler released based on JGI ITS No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova Yes 23638358 Environmental Aquatic Lentic Freshwater Sediment Freshwater sediment 47.07 -122.27889 354011745 948029 292 18 477 0 Unrestricted 0.0 Metagenome 3300001247 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 19JUL2008 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300001247 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 8277861 14973 16 3 26 4 SRX3310667 Unrestricted 0.0 Metagenome 3300011124 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, permeate Toyama Prefectural University 3300011124 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Sediment marine 37.035 137.41472 73456061 193118 28 0 57 7 0.0 Metagenome 3300009933 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R15 University of New South Wales 3300009933 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 104796940 169732 61 3 89 2 0.0 Metagenome 3300046045 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Para, Brazil - P11 DOE Joint Genome Institute (JGI) 3300046045 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Pasture Soil Agricultural land Soil -3.2935 -54.8507 651495406 1544404 302 7 624 11 Restricted 0.0 Metagenome 3300026858 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 69 (SPAdes) DOE Joint Genome Institute (JGI) 3300026858 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 17478707 43865 33 0 52 0 SRX4341332 Unrestricted 0.0 Metagenome 3300000096 *Microbiome Permanent Draft Panchlora sp. gut microbial communities from Gamboa, Panama Panchlora gut microbial communities from Gamboa, Panama - Panchlora_foregut_metagenome v2 (version 2) DOE Joint Genome Institute (JGI) 3300000096 Metagenome Analysis Soap denovo and minimus released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie Yes 28545131 Host-associated Arthropoda: Insects Hindgut Digestive system Unclassified Panchlora sp. gut 9.116667 -79.7 180550456 616861 69 0 140 0 Unrestricted 0.0 Metagenome 3300040679 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone Northern Range (Frog Rock), Northern Rockies, WY, USA - YELL_046-M-20180712-COMP-DNA1 Battelle Memorial Institute 3300040679 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 44.95348 -110.53914 1076736 3708 23 2 30 5 0.0 Metagenome 3300046657 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 soil DOE Joint Genome Institute (JGI) 3300046657 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.587694 -123.193368 7.18 658907185 1169355 318 23 588 41 Unrestricted 16.85 Metagenome 3300031651 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-210 DOE Joint Genome Institute (JGI) 3300031651 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh sediment 42.722 -70.847 515960891 850928 341 2 506 7 SRX6464082 Unrestricted 24.18 Metagenome 3300003880 *Microbiome Permanent Draft Plastic marine debris microbial communities from the Atlantic Ocean Plastic marine debris microbial communities from the Atlantic Ocean - SEA_0094_20120527_metagen Marine Biological Laboratory 3300003880 Metagenome Analysis CLC workbench 7 released per JGI data release policy No Yes amaral@mbl.edu Linda Amaral-Zettler No Environmental Aquatic Oceanic Marine Unclassified marine 31.65 -64.26167 251583509 514417 98 56 160 96 0.0 Metagenome 3300041772 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from the Rocky Mountain Biological Laboratory (RMBL), Gothic, Colorado, United States - 2018WM_2W DOE Joint Genome Institute (JGI) 3300041772 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9595 -106.99 124254655 368392 195 11 376 17 SRX14810663 Unrestricted 8.18 Metagenome 3300043128 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5CP15 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043128 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 137432033 290535 135 3 213 6 SRX8379427 Unrestricted 25.35 Metagenome 3300045479 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-657 Genome Quebec 3300045479 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.230739 -124.060791 988055377 2161774 463 154 737 286 0.0 Metagenome 3300006947 *Microbiome Permanent Draft Marine microbial communities from the West Antarctic Peninsula, for metatranscriptomic analysis Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA DOE Joint Genome Institute (JGI) 3300006947 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mattcott@udel.edu Matthew Cottrell, Matthew T. Cottrell No Environmental Aquatic Coastal Marine Unclassified Marine -64.8156 -64.0406 871519719 2161487 612 15 1002 11 SRX2864353 Unrestricted 0.0 Metagenome 3300006316 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_1000m University of Hawaii 3300006316 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Aphotic zone Marine 22.75 -158.0 419745210 1025485 681 29 965 28 0.0 Metagenome 3300045541 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Platte River, Nebraska, USA - NASQAN2011_433 DOE Joint Genome Institute (JGI) 3300045541 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 41.0152 -96.1577 397993838 879680 490 153 910 254 Unrestricted 0.0 Metagenome 3300049676 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G12_A_3_control DOE Joint Genome Institute (JGI) 3300049676 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 88649490 196706 206 13 431 20 Unrestricted 12.46 Metagenome 3300009099 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Dobu ""control"", cg6adc" University of New South Wales 3300009099 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Cinachyra sp. (marine sponge) -9.752083 150.854133 45165147 68683 24 1 25 2 0.0 Metagenome 3300006067 *Microbiome Permanent Draft Mini-Metagenome - Microbial communities from the Yellowstone National Park Hotspring Microbial Communities from Mammoth Norris Corridor Bijah Springs, Spring 3, Yellowstone National Park, Wyoming, USA - Mini-Metagenomics Stanford University 3300006067 Metagenome Analysis spades 3.0 released per JGI data release policy No Yes brianyu@stanford.edu, brian.yu@czbiohub.or Brian Yu No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified hotspring 44.761133 -110.7309 7 5794453 11621 6 0 3 0 0.0 Metagenome 3300028035 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE5 DOE Joint Genome Institute (JGI) 3300028035 Metagenome Analysis spades v. 3.11.1 Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 59.9989 10.7903 21507617 64797 109 40 196 66 SRX5271699 Unrestricted 6.81 Metagenome 3300013867 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In5-11 gowning area SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300013867 Metagenome Analysis SPAdes 3.10.0 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1 -118.1 72956651 105532 45 12 49 30 Unrestricted 0.0 Metagenome 3300017673 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - W13-15 University of Michigan 3300017673 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu; sjackrel@ucsd.edu Vincent Denef; Sara Jackrel No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.39757 -85.38536 42005451 46991 14 0 13 0 0.0 Metagenome 3300013141 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100792 University of Pennsylvania 3300013141 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 13294372 17896 3 1 6 3 SRX756062 0.0 Metagenome 3300020547 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 05AUG2010 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020547 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 117303367 258807 125 16 194 24 SRX1988995 Unrestricted 0.0 Metagenome 3300026451 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - P.F.S.T-25 DOE Joint Genome Institute (JGI) 3300026451 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 159805376 351666 173 4 310 7 SRX4550137, SRX7705822 Unrestricted 0.0 Metagenome 3300017905 *Microbiome Permanent Draft Marine microbial communities from Caribbean coral reef seawater Marine microbial communities from Caribbean coral reef seawater, Cuba - O. faveolata University of Illinois, Urbana-Champaign 3300017905 Metagenome Analysis MEGAHIT v1.1.1-2-g02102e1 released by JGI data releasing policy No Yes lweber@whoi.edu Laura Weber No Environmental Aquatic Intertidal zone Marine Coral reef seawater 21.10845 -78.7208 5486851 7850 3 6 3 8 0.0 Metagenome 3300040733 *Microbiome Permanent Draft Metagenomes of anaerobic enrichment cultures that dechlorinate hexachlorocyclohexane isomers Lab-enriched soil microbial communities from a contaminated agricultural site, Guadeloupe, France - AlphaHCH MSP Beijing Genomics Institute (BGI) 3300040733 Metagenome Analysis spades v. 3.12.0 Yes Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Environmental Terrestrial Unclassified Soil Contaminated soil 16.249 -61.565 494304961 1074022 159 0 353 0 0.0 Metagenome 3300008711 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 675950834 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008711 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 6178388 10895 15 0 26 0 0.0 Metagenome 3300003990 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2 DOE Joint Genome Institute (JGI) 3300003990 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.080353 -122.108833 732462921 2134913 903 10 1828 17 SRX7142765 Unrestricted 0.0 Metagenome 3300003425 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from above oceans and continental USA - SDPR-008 DOE Joint Genome Institute (JGI) 3300003425 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 2114197 6770 20 28 21 51 Unrestricted 0.0 Metagenome 7000000353 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 158337416 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000353 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 58178020 109931 0 0 0 0 0.0 Metagenome 3300005431 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV75 DOE Joint Genome Institute (JGI) 3300005431 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 766354391 2007935 900 15 1497 28 SRX3194972 Unrestricted 0.0 Metagenome 3300070864 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_006-M-20200806-COMP-DNA1 3300070864 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 6408338 19694 38 5 77 15 0.0 Metagenome 3300026260 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV67 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026260 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 439721840 872914 290 5 423 9 SRX2782318 Unrestricted 0.0 Metagenome 3300014803 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS68_24 University of Hohenheim 3300014803 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 144026555 230528 80 2 129 0 0.0 Metagenome 3300013999 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01336 Weill Cornell Medical College 3300013999 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.83 -73.84 17317161 24342 6 0 18 0 SRX823276 0.0 Metagenome 3300009161 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG DOE Joint Genome Institute (JGI) 3300009161 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 45.4091 -72.0994 1285284984 2304892 607 39 895 67 SRX2996440 Unrestricted 0.0 Metagenome 3300024972 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 10_HOW4 (SPAdes) DOE Joint Genome Institute (JGI) 3300024972 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 136652456 250481 81 4 106 3 SRX2720119 Unrestricted 0.0 Metagenome 3300009847 *Microbiome Permanent Draft Wood falls microbial communities from Lacaze-Duthiers Canyon, Mediterranean Sea, France Wood falls microbial communities from Lacaze-Duthiers Canyon, Mediterranean Sea, France - SF2CT Molecular Research LP (MR DNA) 3300009847 Metagenome Analysis IDBA_UD released per JGI data release policy Yes Yes pierre.galand@obs-banyuls.fr Pierre Galand No Environmental Aquatic Benthic Marine Wood fall Wood falls 42.4666667 3.4666667 40238430 70558 46 4 65 7 0.0 Metagenome 3300043812 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - DMB5_1SRT_A (downsampled for mapping) DOE Joint Genome Institute (JGI) 3300043812 Metagenome Analysis metaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35894622 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.414 34524334 36752 72 4 77 4 SRX12687771, SRX12687772 Unrestricted 0.0 Metagenome 3300056640 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.16C.9 SIP fraction DOE Joint Genome Institute (JGI) 3300056640 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 240325613 497599 129 21 237 28 Unrestricted 17.84 Metagenome 3300025853 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes) (version 4) DOE Joint Genome Institute (JGI) 3300025853 Metagenome Analysis spades v. 3.11.1 Yes Yes chenf@umces.edu; bcampb7@clemson.edu Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.12 -75.25 651199145 1328318 80 1 101 5 SRX2838769, SRX3300551, SRX3300552 Unrestricted 0.0 Metagenome 3300000631 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 09SEP2008 epilimnion DOE Joint Genome Institute (JGI) 3300000631 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 7000000198 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 2, subject 159571453 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000198 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 20372421 32652 0 0 0 0 SRX024560, SRX024559 0.0 Metagenome 3300048613 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT_PTT1_AUG19_150cm DOE Joint Genome Institute (JGI) 3300048613 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9883 -108.4003 181146373 425093 339 8 673 10 Restricted 13.48 Metagenome 3300014966 *Microbiome Permanent Draft Microbial mat communities from high arctic lakes Freshwater microbial mat microbial communities from Canadian High Arctic Lake, Ward Hunt Island, Canada - Sample WHa Laval University 3300014966 Metagenome Analysis IDBA_UD released by Adrien Vigneron No Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified microbial mat 83.079722 -74.138056 817233659 3233833 673 92 1272 130 0.0 Metagenome 3300047164 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Vasterbotten County, Sweden - Sphagnum lindbergii 16OTC_LI_DE DOE Joint Genome Institute (JGI) 3300047164 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.183 19.5578 1328595347 2247839 462 126 758 203 SRX14752510 Unrestricted 9.22 Metagenome 3300070217 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_003-O-20200603-COMP-DNA1 3300070217 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 21990393 70694 94 7 158 17 0.0 Metagenome 3300029958 *Microbiome Permanent Draft Axial Seamount Reassemblies Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Background CTD Marine Biological Laboratory 3300029958 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow background seawater 45.9332 -129.9988 25406035 57694 66 12 137 19 0.0 Metagenome 3300017739 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 56 SPOT_SRF_2014-09-10 DOE Joint Genome Institute (JGI) 3300017739 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 291960143 686993 57 28 126 43 SRX5471865, SRX5471864, SRX5471863 Unrestricted 0.0 Metagenome 3300014046 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100440 University of Pennsylvania 3300014046 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14572870 40361 24 2 28 1 SRX756558 0.0 Metagenome 3300022309 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_4_1 DOE Joint Genome Institute (JGI) 3300022309 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Sediment Marine Unclassified sediment 38.05 -121.934 1479502643 2518888 767 32 1308 65 SRX4054601 Unrestricted 8.98 Metagenome 3300029617 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35739 Beijing Genomics Institute (BGI) 3300029617 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 230098785 292304 213 1 306 1 0.0 Metagenome 3300027726 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 1-3cm March2015 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027726 Metagenome Analysis spades v. 3.11.1 Yes Yes mike.wilkins@colostate.edu Michael Wilkins Yes 30086797 Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0991 -99.1044 557892656 1323720 622 10 1106 20 SRX2753773 Unrestricted 0.0 Metagenome 3300037366 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037366 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0471 799294830 1512582 244 5 423 19 SRX4415330, SRX8128005 Unrestricted 0.0 Metagenome 3300021960 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D DOE Joint Genome Institute (JGI) 3300021960 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Unclassified Marine Unclassified Estuarine water 38.0566 -122.185 1402153542 2955257 630 186 975 280 SRX4051896 Unrestricted 17.25 Metagenome 3300011503 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00619 Weill Cornell Medical College 3300011503 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.8 -73.91 16357996 29218 11 0 10 0 SRX822586 0.0 Metagenome 3300042781 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_10_20 NMDC pilot DOE Joint Genome Institute (JGI) 3300042781 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 27866501 40137 42 0 51 0 SRX2924399 0.0 Metagenome 3300022591 *Microbiome Permanent Draft Thermokarst lakes Summer vs Winter Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2 Laval University 3300022591 Metagenome Analysis IDBA-UD 1.1 released by Adrien Vigneron No Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 55.1491 -77.4866 354077501 780589 324 27 482 39 0.0 Metagenome 3300039109 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A15_65cm_0.25M University of Tennessee 3300039109 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 549619703 1068472 279 7 468 7 SRX710573 0.0 Metagenome 3300013440 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100113 University of Pennsylvania 3300013440 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12582401 30498 12 0 16 1 SRX756717 0.0 Metagenome 3300048760 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 E-1-S DOE Joint Genome Institute (JGI) 3300048760 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3532 19.0467 332676536 536262 220 4 328 8 Restricted 14.27 Metagenome 3300042623 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Dicuspiditermes spinitibialis from Bubeng, China - Xx448 Eurofins MWG Operon 3300042623 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 21.61799 101.58134 288239076 363000 153 5 244 4 0.0 Metagenome 3300070371 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Florida, USA - DSNY_004-M-20180820-COMP-DNA1 3300070371 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 44959980 132706 98 8 158 12 0.0 Metagenome 3300027899 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from the University of Notre Dame, USA, of lakes that contribute to methane emissions Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027899 Metagenome Analysis spades v. 3.11.1 Yes Yes sjones20@nd.edu Stuart Jones Yes 28386012 Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 41.7 -86.23 2148189598 4958305 1557 241 2784 372 SRX2576541 Unrestricted 0.0 Metagenome 3300030438 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019851-102 Beijing Genomics Institute (BGI) 3300030438 Metagenome Analysis Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 233387318 305811 195 1 283 1 0.0 Metagenome 3300032039 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21 DOE Joint Genome Institute (JGI) 3300032039 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1186158670 2889340 434 11 695 20 SRX5820243 Unrestricted 10.78 Metagenome 3300021433 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O DOE Joint Genome Institute (JGI) 3300021433 Metagenome Analysis spades v. 3.11.1-check Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 2908642001 6319861 863 95 1563 165 SRX4023411 Unrestricted 8.88 Metagenome 3300003449 *Microbiome Permanent Draft Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S9-DC07C 3300003449 Metagenome Analysis released per JGI data releasing policy No Yes julie.champagne@cnrc-nrc.gc.ca Julie Champagne No Environmental Aquatic Neritic zone/Coastal water Marine Sediment Marine sediment 53.6667 -129.1333 29027271 117979 36 1 74 7 0.0 Metagenome 3300033894 *Microbiome Permanent Draft Hot spring microbial communities from different geyser basins in Yellowstone National Park, WY, United States Hot spring water microbial communities from Norris-Mammoth Corridor, Yellowstone National Park, WY, United States - NMC.RSW_P DOE Joint Genome Institute (JGI) 3300033894 Metagenome Analysis spades v. 3.13.0 Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Unclassified Thermal springs Unclassified hot spring water 44.7535 -110.7249 147463480 268299 153 12 236 10 SRX7584883 Unrestricted 539.86 Metagenome 3300043485 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 036-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043485 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9206 -106.9514 716965954 1815756 681 45 1312 80 Unrestricted 8.13 Metagenome 3300008134 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159571453 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008134 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 127150278 187346 102 0 150 0 0.0 Metagenome 3300036779 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Eucalyptus forests in New South Wales, Australia - Eu_8 DOE Joint Genome Institute (JGI) 3300036779 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Tropical forest Soil Bulk soil soil -34.5 150.0 2043809453 3361827 412 62 662 89 SRX8383187 Unrestricted 17.64 Metagenome 3300025390 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH04Jul08 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025390 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 133369768 284296 106 32 189 58 SRX2565527 Unrestricted 0.0 Metagenome 3300040243 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 054_R1_022417 University of Maryland 3300040243 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.98543056 25.64503889 7204802 18105 26 5 55 8 0.0 Metagenome 2022920011 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP12 Calcite Springs, Tower Falls Region v2 (version 2) DOE Joint Genome Institute (JGI) 2022920011 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23755042 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.90485 -110.404033 7.8 12130906 17671 108 0 22 0 Unrestricted 0.0 Metagenome 3300001851 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM31, ROCA_DNA206_0.2um_MCP-S_C_3b 3300001851 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Lotic Freshwater Unclassified Marine plankton -0.156917 -50.62255 286444227 691312 58 2 202 7 0.0 Metagenome 3300059455 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.18C.12 SIP fraction DOE Joint Genome Institute (JGI) 3300059455 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 189816268 374686 172 71 342 103 Unrestricted 0.0 Metagenome 3300005352 *Microbiome Permanent Draft Trichonympha termite gut microbial communities from Mt. Pinos, Los Padres National Forest, California, USA Trichonympha termite gut microbial communities from Mt. Pinos, Los Padres National Forest, California, USA DOE Joint Genome Institute (JGI) 3300005352 Metagenome Analysis Unkonwn released based on JGI ITS No Yes sgtringe@lbl.gov, brune@mpi-marburg.mpg.de Susannah Tringe, Andreas Brune Yes 26914459 Host-associated Protists Parabasalids Excavata Anaerobic Trichonympha termite gut 34.597241 -119.510771 24579496 42467 23 1 30 0 Unrestricted 0.0 Metagenome 3300040304 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_005-M-20160720-COMP-DNA1 Battelle Memorial Institute 3300040304 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 5959646 17135 23 3 56 5 0.0 Metagenome 3300002721 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A3-10 DOE Joint Genome Institute (JGI) 3300002721 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 167349 563 34 0 57 0 SRX1991111 Unrestricted 0.0 Metagenome 3300002354 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 21JUN2010 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002354 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 31220231 73031 74 3 141 6 SRX1988905 Unrestricted 0.0 Metagenome 3300026332 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_09_40cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026332 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 643555354 1185384 357 10 591 15 SRX2727807 Unrestricted 0.0 Metagenome 3300035373 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_2c_1 mgh University of Alberta 3300035373 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified wastewater 56.7292 -111.3885 49363372 65655 34 1 54 0 0.0 Metagenome 7000000684 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 763597684 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000684 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 168073933 264614 0 0 0 0 0.0 Metagenome 3300035638 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_1_18_6 mgh University of Alberta 3300035638 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 52518375 66016 32 0 43 0 0.0 Metagenome 3300030106 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_076 - TARA_R100001129 CEA Genoscope 3300030106 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -21.0292 -35.3498 351704157 678433 48 0 83 0 0.0 Metagenome 3300033984 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030 DOE Joint Genome Institute (JGI) 3300033984 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1100951868 2110590 329 133 492 198 SRX7621644 Unrestricted 19.75 Metagenome 3300025672 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI073_LV_120m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025672 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 438308805 867460 311 12 480 24 Unrestricted 0.0 Metagenome 3300019487 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG DOE Joint Genome Institute (JGI) 3300019487 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Cave Deep subsurface Wall biofilm Microbial mat on rocks 19.0643 -155.8008 1952845928 3266718 1104 17 1789 25 SRX4663566 Unrestricted 12.37 Metagenome 3300036378 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036378 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 126089970 228300 88 6 141 22 SRX4415309, SRX7705661 Unrestricted 0.0 Metagenome 3300022674 *Microbiome Permanent Draft Carpinteria Salt Marsh Metagenomes 2014 to 2017 Soil microbial communities from marsh rhizosphere in Carpinteria, CA, United States - Rhizo M University of California, Irvine 3300022674 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Terrestrial Wetlands Soil Unclassified Soil 34.401 -119.534 271718992 285758 76 4 67 3 0.0 Metagenome 3300030517 *Microbiome Permanent Draft Rock endolithic microbial communities from Victoria Land, Antarctica Rock endolithic microbial communities from Victoria Land, Antarctica - Battleship Promontory nord DOE Joint Genome Institute (JGI) 3300030517 Metagenome Analysis spades v. 3.11.1 Yes Yes selbmann@unitus.it Laura Selbmann Yes 32139564 Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock -76.9 160.9 456721885 678172 59 18 59 21 SRX5224917 Unrestricted 43.54 Metagenome 3300028394 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028394 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 45.4091 -72.0994 680892221 1286306 277 50 393 89 SRX2524547 Unrestricted 0.0 Metagenome 3300009182 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG DOE Joint Genome Institute (JGI) 3300009182 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 46.8319 -72.5 1031816211 1927426 609 130 947 230 SRX2955011 Unrestricted 0.0 Metagenome 3300028972 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 258_4M Beijing Genomics Institute (BGI) 3300028972 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 22311284 23352 17 1 30 0 ERX491032 0.0 Metagenome 3300038305 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI152_2019_jun_10m DOE Joint Genome Institute (JGI) 3300038305 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 233333088 474019 196 158 294 257 SRX9402724 Unrestricted 12.17 Metagenome 3300046029 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_3_B DOE Joint Genome Institute (JGI) 3300046029 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 161197911 193805 110 1 118 2 Restricted 85.83 Metagenome 3300012557 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100250 University of Pennsylvania 3300012557 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 10634201 25011 26 2 37 2 SRX756651 0.0 Metagenome 3300013602 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100141 University of Pennsylvania 3300013602 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4676262 9551 11 3 15 8 SRX756391 0.0 Metagenome 3300009460 *Microbiome Permanent Draft Host-associated microbial communities of aphids from plants in several locations around USA Microbial communities of aphids from Pistacia texana in Langtry, TX, USA - Geopemphigus sp. seqcov University of Texas, Austin 3300009460 Metagenome Analysis CLC Genomics released per JGI data release policy Yes Yes becky.chong@utexas.edu Rebecca Chong No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Pistacia texana 29.808543 -101.559685 229124726 133574 5 1 5 1 0.0 Metagenome 3300032883 *Microbiome Permanent Draft Lake microbial communities from Canada Sediment microbial communities from the Boreal Shield Ecozone, Canada - bottom sediment 06-126 Genome Quebec 3300032883 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Unclassified Sediment Unclassified Sediment 48.99124 -74.02811 1281090818 2508466 576 7 1095 18 0.0 Metagenome 3300042275 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA MBR feed microbial communities from membrane bioreactor in Denver, Colorado, USA - FD_D206_1 DOE Joint Genome Institute (JGI) 3300042275 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Wastewater Mine water Industrial wastewater Produced water MBR feed 39.7823 -104.9101 740366791 1185404 572 5 869 4 Unrestricted 17.32 Metagenome 3300041009 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - RDC-3_at_8-9_cm Genome Quebec 3300041009 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.80159 -73.41443 652436181 1493713 622 9 1325 14 0.0 Metagenome 3300025126 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-0102 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025126 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 652830952 1101726 563 36 794 51 SRX3198639 Unrestricted 0.0 Metagenome 3300027967 *Microbiome Permanent Draft Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027967 Metagenome Analysis spades v. 3.11.1 Yes Yes jeremy.rich@maine.edu Jeremy Rich No Environmental Aquatic Coastal Marine Sediment Marine sediment 729099298 1541133 610 19 963 32 SRX2837944 Unrestricted 0.0 Metagenome 3300044613 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME31Aug2012-rr0970 DOE Joint Genome Institute (JGI) 3300044613 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 945292166 1419810 318 39 433 59 Unrestricted 18.79 Metagenome 3300001737 *Microbiome Draft Saline water and sediment microbial community from Etoliko Lagoon, Greece Saline benthic water microbial community from Etoliko Lagoon, Greece v1 DOE Joint Genome Institute (JGI) 3300001737 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes sgtringe@lbl.gov, nckyrpides@lbl.gov Susannah Tringe, Nikos Kyrpides No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline water and sediment 38.468307 21.333032 68840610 144169 97 0 196 1 Unrestricted 0.0 Metagenome 3300027655 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027655 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Saprolite Vadose zone soil 39.7291 -123.6419 389201859 862896 211 3 358 8 SRX2752508 Unrestricted 0.0 Metagenome 3300043539 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME09Nov2012-rr0961 DOE Joint Genome Institute (JGI) 3300043539 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 804381660 1202472 306 37 390 59 Unrestricted 25.46 Metagenome 3300042762 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S3_0_10 NMDC pilot DOE Joint Genome Institute (JGI) 3300042762 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228508 -119.2716818 68288091 186522 197 8 355 15 SRX2522700 0.0 Metagenome 3300042340 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME07Oct2016-rr0736 DOE Joint Genome Institute (JGI) 3300042340 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 518534467 820494 288 77 413 131 Unrestricted 14.19 Metagenome 3300014727 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00260 Weill Cornell Medical College 3300014727 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.97 19910714 34867 20 1 27 0 SRX822233 0.0 Metagenome 3300019469 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 2 Autonomous University of Barcelona 3300019469 Metagenome Analysis SPAdes 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 2003786 3366 0 0 0 0 0.0 Metagenome 3300001458 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from the Cayman Rise, Cayman Islands Hydrothermal vent plume microbial communities from the Mid Cayman Rise - All Sites - gte1k 3300001458 Metagenome Analysis Velvet + MetaVelvet at multiple Kmers followed by Minimus2 on all assemblies released by JGI data releasing policy No Yes Gregory Dick, Sunit Jain No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 18.35 -81.85 153768584 216865 26 3 63 2 0.0 Metagenome 3300020472 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995) CEA Genoscope 3300020472 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 31.4813 -159.088 1758672018 4204017 711 163 1289 335 0.0 Metagenome 3300003188 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment Column8K7-120 454 Life Sciences 3300003188 Metagenome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.342219 40.479289 6-8 0 0 0 0 0 0 0.0 Metagenome 3300039055 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - CEB1 Michigan State University 3300039055 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 36.75 175.833333 28070944 77791 0 1 3 1 0.0 Metagenome 3300045764 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - P2-R3-B DOE Joint Genome Institute (JGI) 3300045764 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.357 19.047 349732703 757199 186 21 330 33 Unrestricted 7.44 Metagenome 3300026150 *Microbiome Permanent Draft Utah desert microbiome from environmental samples near Hanksville, Utah, USA Rock biofilm microbial communities from Utah desert near Hanksville, Utah, USA - E3.3 McGill University 3300026150 Metagenome Analysis canu v. 1.7 released by Catherine Maggiori No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Terrestrial Unclassified Soil Desert Rock biofilm 38.41714146 -110.78530232 24333119 28616 15 0 21 0 0.0 Metagenome 3300027047 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF042 (SPAdes) DOE Joint Genome Institute (JGI) 3300027047 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 104381523 283907 75 4 128 6 SRX2014385 Unrestricted 0.0 Metagenome 3300018046 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10 DOE Joint Genome Institute (JGI) 3300018046 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 1453067486 2815276 884 63 1403 115 SRX3959979 Unrestricted 7.32 Metagenome 3300006192 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater microbial communities from Pennsylvania, USA, analyzing microbe dynamics in response to fracking - TARM_MetaG_T_14 DOE Joint Genome Institute (JGI) 3300006192 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic River Freshwater Unclassified watersheds 41.2451 -76.9856 724650584 1754248 1448 7 2431 11 SRX2745331, SRX2745330 Unrestricted 0.0 Metagenome 3300028633 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Gly DOE Joint Genome Institute (JGI) 3300028633 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 309371303 509700 230 1 354 0 SRX5281748 Unrestricted 26.19 Metagenome 3300024464 *Microbiome Permanent Draft Permafrost microbial communities from glacier foreland in Svalbard, Norway Permafrost microbial communities from glacier foreland in Svalbard, Norway - ML191 KOREA POLAR RESEARCH INSTITUTE 3300024464 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes sarbjeet.niraula@mavs.uta.edu Sarbjeet Niraula No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 78.8993381 12.06462507 8.2 1806194 6112 36 4 34 11 0.0 Metagenome 3300027544 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius sp. DAHAB.2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027544 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 626306862 683895 8 3 10 2 SRX2711811 Unrestricted 0.0 Metagenome 3300000538 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (5 cm)-Day0 454 University of Tennessee 3300000538 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 0 0 0 0 0 0 0.0 Metagenome 3300028378 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E6 #832 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028378 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 212804840 377952 213 11 316 11 SRX3241686 Unrestricted 0.0 Metagenome 3300032330 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 17-090 Genome Quebec 3300032330 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.136558 -70.809503 504662627 1076762 303 85 493 144 0.0 Metagenome 3300022698 *Microbiome Permanent Draft Carpinteria Salt Marsh Metagenomes 2014 to 2017 Sediment microbial communities from marsh intertidal zone in Carpinteria, CA, United States - S2 University of California, Irvine 3300022698 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Aquatic Intertidal zone Marine Sediment Sediment 34.401 -119.534 284992661 299569 73 2 77 2 0.0 Metagenome 3300033549 *Microbiome Permanent Draft Sinkhole microbial mat communities from Lake Huron, Michigan, USA Sinkhole microbial mat communities from Lake Huron, Michigan, USA - SG0419 University of Michigan 3300033549 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy Yes Yes sgrim01@gmail.com Sharon Grim No Environmental Aquatic Sinkhole Freshwater Unclassified microbial mat 45.19843 -83.32721 533030948 705563 252 1 335 1 0.0 Metagenome 3300040189 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Atlantic Neotropical, PR, USA - GUAN_048-M-20161004-COMP-DNA1 Battelle Memorial Institute 3300040189 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 17.96955 -66.8687 10547590 30969 39 3 84 5 0.0 Metagenome 3300006741 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 763982056 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300006741 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 264290 1008 6 0 14 0 SRX024067 0.0 Metagenome 3300053156 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere DOE Joint Genome Institute (JGI) 3300053156 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.587442 -123.193709 890673088 1431624 338 147 528 196 Unrestricted 13.76 Metagenome 3300036394 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Pegethrix bostrychoides GSE-TBD4-15B and co-occurring heterotrophs from rock surface from Grand Staircase-escalante National Monument, Utah, United States - 20190225_38 DOE Joint Genome Institute (JGI) 3300036394 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Rock surface 37.3202 -111.5307 41371435 41869 14 0 14 0 SRX8849068 Unrestricted 242.77 Metagenome 3300036972 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - 2AD 61 I DOE Joint Genome Institute (JGI) 3300036972 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 530048442 973936 615 7 966 11 SRX8377725 Unrestricted 18.21 Metagenome 3300026305 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_02_20cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026305 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 180628018 380374 202 15 363 22 SRX2727978 Unrestricted 0.0 Metagenome 3300049637 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_6_F DOE Joint Genome Institute (JGI) 3300049637 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 187270854 219487 109 1 131 1 Restricted 84.19 Metagenome 3300000145 *Microbiome Draft Feedstock adapted compost microbial communities from Newby Island compost facility, Milpitas CA Feedstock adapted compost microbial communities from Newby Island compost facility, Milpitas, CA, USA - Passage 4_IL DOE Joint Genome Institute (JGI) 3300000145 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Solid waste Composting Feedstock Unclassified Feedstock adapted compost 37.454581 -121.928712 85065922 132297 90 4 136 9 Unrestricted 0.0 Metagenome 3300033616 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from gas well in West Virginia, United States - Marcellus 3H_2015_12_11 Ohio State University 3300033616 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes rebdaly@colostate.edu Rebecca Daly No Environmental Terrestrial Fracking water Deep subsurface Unclassified Fracking water 39.6017 -79.9761 12780175 13976 5 0 2 0 0.0 Metagenome 3300042897 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME13Feb2010-rr0856 DOE Joint Genome Institute (JGI) 3300042897 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1160501689 1803084 307 91 366 112 Unrestricted 26.08 Metagenome 3300025933 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025933 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 3444979147 8043852 1682 104 3066 156 SRX2740161 Unrestricted 0.0 Metagenome 3300012054 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC091 MetaG DOE Joint Genome Institute (JGI) 3300012054 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 41.8102 -72.2564 89147368 151038 5 23 14 37 SRX3539735 Unrestricted 0.0 Metagenome 3300030014 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N3_3 DOE Joint Genome Institute (JGI) 3300030014 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 479021685 1270941 800 52 1440 90 SRX5799063 Unrestricted 9.18 Metagenome 3300001253 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 20AUG2008 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300001253 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.099444 -89.404444 5707621 11027 15 4 21 5 SRX3310673 Unrestricted 0.0 Metagenome 3300049186 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - D8_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049186 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 245759837 565992 239 13 568 13 Unrestricted 0.0 Metagenome 3300015052 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction) DOE Joint Genome Institute (JGI) 3300015052 Metagenome Analysis metalrec/blasr v. metalrec version 1.0.2/blasr 1.3.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 660450842 1117204 365 42 522 64 SRX3048967, SRX3048968, SRX3048969, SRX3048961, SRX3048962, SRX3048963, SRX3048964, SRX3048965, SRX3048966 Unrestricted 0.0 Metagenome 3300069623 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_005-M-20160720-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069623 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 12731177 37237 44 1 77 3 0.0 Metagenome 3300020713 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 20AUG2007 hypolimnion DOE Joint Genome Institute (JGI) 3300020713 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 96472500 209521 120 6 173 9 Unrestricted 0.0 Metagenome 3300031765 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22 DOE Joint Genome Institute (JGI) 3300031765 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1714286989 4096133 387 6 621 11 SRX5820240 Unrestricted 13.19 Metagenome 3300046643 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-C1 1-5 DOE Joint Genome Institute (JGI) 3300046643 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0435 375336953 616280 244 34 401 62 Restricted 13.88 Metagenome 3300031718 *Microbiome Permanent Draft Hardwood forest soil microbial communities from various locations in the United States Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 DOE Joint Genome Institute (JGI) 3300031718 Metagenome Analysis spades v. 3.12.0 Yes Yes jdraff@indiana.edu Jonathan Raff No Environmental Terrestrial Temperate forest Soil Bulk soil hardwood forest soil 39.0844 -86.4705 2915059179 6261619 861 140 1569 195 SRX5360346 Unrestricted 8.97 Metagenome 3300039384 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 387_4M Beijing Genomics Institute (BGI) 3300039384 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 45427979 59574 26 1 61 1 ERX491126 0.0 Metagenome 3300025099 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025099 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -16.21 -76.63 259804812 603576 31 2 53 1 SRX2929233 Unrestricted 0.0 Metagenome 3300048068 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_180309.NP2 DOE Joint Genome Institute (JGI) 3300048068 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 647097337 1345462 410 50 561 89 Unrestricted 17.2 Metagenome 3300069275 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Environmental Research Center, Mid-Atlantic, MD, USA - SERC_047-M-20170711-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069275 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89008 -76.56001 12757499 40368 61 17 99 19 0.0 Metagenome 3300013635 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00963 Weill Cornell Medical College 3300013635 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.73 -73.87 11534308 15141 5 0 9 0 SRX822925 0.0 Metagenome 3300029431 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 037_10_28_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029431 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 217984421 291018 260 0 335 0 0.0 Metagenome 3300015297 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_09MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015297 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 156881451 272596 22 90 24 158 SRX3921979 Unrestricted 8.99 Metagenome 2228664001 *Microbiome Draft Laboratory Nasutitermes corniger gut microbial communities from Florida, USA P3 Gut Segment Termite Single Cell Genome_Treponema sp. T4a from Florida USA DOE Joint Genome Institute (JGI) 2228664001 Metagenome Analysis Newbler, Velvet released based on JGI ITS No Yes stringe@lbl.gov, phugenholtz@gmail.com Susannah Tringe, Phil Hugenholtz No Host-associated Arthropoda: Insects Hindgut Digestive system Paunch/P3 segment Laboratory Nasutitermes corniger gut 26.135 -80.129 6847880 18862 20 0 107 0 Unrestricted 0.0 Metagenome 3300042987 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Alabama, United States - tombigeeriver_2019_sw_WHONDRS-S19S_0020 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300042987 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 31.8531 -88.1574 669960864 1190389 318 67 477 81 Unrestricted 25.99 Metagenome 3300035154 *Microbiome Permanent Draft Forest soil microbial communities from Eldorado National Forest, California, USA Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_CLV_1.1 DOE Joint Genome Institute (JGI) 3300035154 Metagenome Analysis metaspades v. 3.13.0 Yes Yes ndove7@gmail.com Nicholas Dove No Environmental Terrestrial Temperate forest Soil Bulk soil soil 38.7864 -120.429 1428284310 4025650 1466 117 2780 204 SRX7659642 Unrestricted 8.27 Metagenome 3300025847 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC117_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025847 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 22.28 114.17 687536856 1234471 549 3 852 10 SRX2338797 Unrestricted 0.0 Metagenome 3300046320 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_80 DOE Joint Genome Institute (JGI) 3300046320 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9223 -106.9493 516541097 1302241 1225 33 2482 57 Restricted 0.0 Metagenome 3300025161 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC9 2012 metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025161 Metagenome Analysis spades v. 3.11.1 Yes Yes jkjarett@lbl.gov; rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca; twoyke@lbl.gov Jessica Jarett; Ramunas Stepanauskas; Peter Dunfield; Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 49.9543 -116.5155 7.94 661598733 1029424 470 4 698 7 SRX2839020 Unrestricted 0.0 Metagenome 3300027782 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027782 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh Yes 29921005 Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 48.2311 -71.2508 854665324 1683012 351 60 517 88 SRX2996495 Unrestricted 0.0 Metagenome 3300069340 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Moab, Southern Rockies & Colorado Plateau, UT, USA - MOAB_006-M-20170521-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069340 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.24833 -109.38827 10643949 34241 66 3 128 2 0.0 Metagenome 3300061139 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IF2SW no PMA treatment Jet Propulsion Laboratory, California Institute of Technology 3300061139 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 9205116 14785 3 3 10 5 SRX2249368, SRX2249369, SRX3808525, SRX3808537 0.0 Metagenome 3300054051 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_8_10 re-annotation DOE Joint Genome Institute (JGI) 3300054051 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 137652401 337300 235 103 483 192 SRX3002123 0.0 Metagenome 3300002173 *Microbiome Permanent Draft Biogas fermentation microbial communities from biogas plants in Germany Biogas fermentation microbial communities from Germany - Plant 2 DNA1 DOE Joint Genome Institute (JGI) 3300002173 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes asczyrba@techfak.uni-bielefeld.de Alexander Sczyrba Yes 27462367 Engineered Bioreactor Digestate Anaerobic Unclassified Biogas fermentantion 52.0385 8.4956 7.8 525881718 1005995 916 28 1462 42 SRX1597946 Unrestricted 0.0 Metagenome 3300028779 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_2 DOE Joint Genome Institute (JGI) 3300028779 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 813292405 1605324 324 39 504 69 SRX5356669 Unrestricted 0.0 Metagenome 3300061666 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0392 Microbiome Insights 3300061666 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 79591230 117110 29 2 54 6 0.0 Metagenome 3300048015 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Western Region, Iceland - Sphagnum magellanicum H3_MAG_ICE DOE Joint Genome Institute (JGI) 3300048015 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 2280492680 3043111 597 159 793 207 SRX14752738 Unrestricted 19.56 Metagenome 3300030233 *Microbiome Permanent Draft Coastal marine microbial mats from various locations Stromatolite biofilm microbial communities from Shark Bay, Australia - S1 Massachusetts Institute of Technology 3300030233 Metagenome Analysis Megahit v. 1.0.2 Release all MAGs associated with Gp0329626 sequencing project ID. No Yes skoog@mit.edu Emilie Skoog No Environmental Aquatic Coastal Marine Sediment Stromatolite biofilm -26.141967 114.236685 598505912 621691 124 5 108 3 0.0 Metagenome 7000000347 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 160582958 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000347 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2338491 3494 0 0 0 0 0.0 Metagenome 3300002085 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - site 1 Avi DOE Joint Genome Institute (JGI) 3300002085 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes rmkelly@ncsu.edu Robert Kelly Yes 29475869 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6102 -110.4387 5693260 6797 6 0 7 0 SRX3317568, SRX7118881, SRX7118892, SRX7118880, SRX7118891, SRX7118890, SRX7118896, SRX7118885, SRX7118895, SRX7118884, SRX7118883, SRX7118894, SRX7118893, SRX7118882, SRX7118889, SRX7118888, SRX7118887, SRX7118886, SRX7118897 Unrestricted 0.0 Metagenome 3300005617 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 DOE Joint Genome Institute (JGI) 3300005617 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 6875002008 18965586 4191 300 6879 529 SRX2740070, SRX2740071 Unrestricted 0.0 Metagenome 3300032281 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada - Lake 06-142 Genome Quebec 3300032281 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.87684 -75.957058 648816209 1333617 300 76 526 135 0.0 Metagenome 3300020553 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 17MAY2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020553 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 121830199 280926 92 17 201 23 SRX1989750 Unrestricted 0.0 Metagenome 3300042049 *Microbiome Permanent Draft Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - L_b14.6 Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042049 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1241 -89.1401 863049993 873246 5 8 9 12 SRX5234786 0.0 Metagenome 3300026938 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026938 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 19000951 64544 72 4 134 4 SRX1990534 Unrestricted 0.0 Metagenome 3300009853 *Microbiome Permanent Draft Wood falls microbial communities from Lacaze-Duthiers Canyon, Mediterranean Sea, France Wood falls microbial communities from Lacaze-Duthiers Canyon, Mediterranean Sea, France - F3EC Molecular Research LP (MR DNA) 3300009853 Metagenome Analysis IDBA_UD released per JGI data release policy Yes Yes pierre.galand@obs-banyuls.fr Pierre Galand No Environmental Aquatic Benthic Marine Wood fall Wood falls 42.4666667 3.4666667 107433218 215643 15 32 16 57 0.0 Metagenome 3300040448 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Temperate deciduous broadleaf forest soil microbial communities from Baltimore, USA - 015_R1_022417 University of Maryland 3300040448 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate deciduous broadleaf forest soil 39.49684667 -76.68891667 3781538 12288 25 2 48 2 0.0 Metagenome 3300008346 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159268001 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008346 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 127849096 170401 102 1 149 0 SRX023549, SRX023550 0.0 Metagenome 3300038332 *Microbiome Permanent Draft Marine sediment microbial communities from New Orleans, USA to study impact of Deep Water Horizon explosion Marine sediment microbial communities from Barataria Bay, New Orleans, USA to study impact of Deep Water Horizon explosion - O9605rep Battelle Memorial Institute 3300038332 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Coastal Marine Sediment Marine sediment 29.47 -89.925 225984259 535073 223 7 507 16 0.0 Metagenome 3300042969 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-386 Genome Quebec 3300042969 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 53.463352 -113.228239 1672372371 3821751 800 248 1304 370 0.0 Metagenome 3300005958 *Microbiome Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypoxic/sulfidic aquatic microbial communities from Cistern Spring, Yellowstone National Park, USA v2 (version 2) DOE Joint Genome Institute (JGI) 3300005958 Metagenome Analysis SPADES v3.5.0 released based on JGI ITS Yes Yes nnivanova@lbl.gov, jim.fredrickson@pnnl.gov Natasha Ivanova, Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hypoxic/sulfidic aquatic 44.7230812 -110.7040247 4.4 64323744 116454 40 0 46 0 Unrestricted 0.0 Metagenome 3300071115 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from KU Field Station, Kansas, USA - UKFS_001-M-20180813-COMP-DNA1 3300071115 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 29768168 89871 64 1 132 0 0.0 Metagenome 3300045770 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - G3-R2-A DOE Joint Genome Institute (JGI) 3300045770 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3549 19.0438 380973694 874604 329 33 594 63 Unrestricted 6.72 Metagenome 3300026527 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_12_20cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026527 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 571887015 1086051 614 22 1156 37 SRX2728223 Unrestricted 0.0 Metagenome 3300009293 *Microbiome Permanent Draft Marine Benthic Group E (MBGE) amplified cells Marine water microbial communities from mid-convective layer of Atlantis II Deep brine pool - Marine Benthic Group E (MBGE) amplified cells version2 King Abdullah University of Science and Technology 3300009293 Metagenome Analysis SPAdes released per JGI data release policy No Yes fauziharoon@gmail.com Fauzi, Fauzi Haroon No Environmental Aquatic Unclassified Marine Unclassified Marine 21.346 38.0 2094499 2668 1 0 1 0 0.0 Metagenome 3300001983 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot1-2 3300001983 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 7661742 43727 121 4 190 3 0.0 Metagenome 3300044608 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME06Aug2018-rr0945 DOE Joint Genome Institute (JGI) 3300044608 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1569926041 2309810 513 88 690 125 Unrestricted 17.11 Metagenome 3300044487 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - LIV12-9-19-19 DOE Joint Genome Institute (JGI) 3300044487 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.4227 -120.6677 350365764 1009634 475 77 803 136 Restricted 6.08 Metagenome 3300007357 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160319967 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007357 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 135887921 189066 86 0 117 0 0.0 Metagenome 3300045094 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_7_A DOE Joint Genome Institute (JGI) 3300045094 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 208888024 246680 120 1 145 2 Unrestricted 91.66 Metagenome 3300035583 *Microbiome Permanent Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-2_at_8-9_cm Genome Quebec 3300035583 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89934 -73.72822 585447461 1570421 816 16 1854 35 0.0 Metagenome 3300020000 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - L3a1 DOE Joint Genome Institute (JGI) 3300020000 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9136 -106.8951 235072454 500011 250 33 548 49 SRX3942781, SRX3942782 Unrestricted 0.0 Metagenome 3300043496 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 327-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043496 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9581 -106.9843 1185767153 2907809 704 46 1202 80 Unrestricted 7.35 Metagenome 3300009474 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 3m depth; DNA IDBA-UD Marine Biological Laboratory 3300009474 Metagenome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes jhuber@mbl.edu, jhuber@mbl.edu; jhuber@whoi.edu Huber, Huber; Julie Huber No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 7.7 325592313 656272 302 53 403 84 0.0 Metagenome 3300012120 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC082 MetaG DOE Joint Genome Institute (JGI) 3300012120 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 34.9171 -79.3534 113434944 197982 35 32 43 44 SRX3539729 Unrestricted 0.0 Metagenome 3300049727 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvC-P(1) 1-5 DOE Joint Genome Institute (JGI) 3300049727 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.355 19.0437 532333021 722861 178 31 198 42 Restricted 16.85 Metagenome 3300044469 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - 1SFNV_THU_A25 DOE Joint Genome Institute (JGI) 3300044469 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.2467 -62.8454 535776349 1620003 511 9 1067 16 Unrestricted 6.95 Metagenome 3300047549 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Kansas, United States - king_2019_sw_WHONDRS-S19S_0016 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047549 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 39.1041 -96.6027 125788027 221076 256 152 440 223 Unrestricted 0.0 Metagenome 3300017714 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 35 SPOT_SRF_2012-08-15 DOE Joint Genome Institute (JGI) 3300017714 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 285618408 647389 23 15 57 37 SRX5471774, SRX5471773 Unrestricted 0.0 Metagenome 3300047471 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere DOE Joint Genome Institute (JGI) 3300047471 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.121 -123.2704 1329890137 2121329 344 93 541 114 Unrestricted 12.22 Metagenome 3300007585 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1562A-3 DOE Joint Genome Institute (JGI) 3300007585 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2105 -123.7516 295422422 589180 325 50 501 78 SRX2753753 Unrestricted 0.0 Metagenome 3300070581 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_043-M-20200804-COMP-DNA1 Battelle Memorial Institute 3300070581 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 46.234247 -89.542459 5.07-5.42 16868778 53275 60 5 129 15 0.0 Metagenome 3300023037 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-217 DOE Joint Genome Institute (JGI) 3300023037 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Unclassified Plant litter Unclassified leaf litter 40.2526 -123.026 88168703 180813 46 46 70 66 SRX4392063 Unrestricted 47.33 Metagenome 3300002129 *Microbiome Permanent Draft Mangrove soil microbial communities from Brazil, analyzing biochemical cycles METATRANSCRIPTOMICS AND GENOMIC CONTEXT IN MICROBIAL COMMUNITIES INVOLVED IN THE BIOGEOCHEMICAL CYCLES IN MANGROVES 3300002129 Metagenome Analysis released by JGI data releasing policy No Yes dias147@gmail.com Armando Dias No Environmental Terrestrial Sand Soil Unclassified Mangrove soil 6 6375540 5990 0 0 0 0 0.0 Metagenome 3300038363 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI150_2019_feb_150m DOE Joint Genome Institute (JGI) 3300038363 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 289973090 606600 253 8 462 13 SRX9402672 Unrestricted 14.21 Metagenome 3300022660 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet fungal communities from Santa Barbara, California, USA - pellet 2 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022660 Metagenome Analysis spades v. 3.11.1-check Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4204 -119.6671 3092927948 5460885 4167 23 5519 29 SRX3963494 Unrestricted 16.0 Metagenome 3300021507 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-11-1-2_MG DOE Joint Genome Institute (JGI) 3300021507 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.0118 -110.5962 264224592 551683 250 0 375 0 SRX3982218 Unrestricted 25.01 Metagenome 3300020184 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101409BT metaG (spades assembly) DOE Joint Genome Institute (JGI) 3300020184 Metagenome Analysis spades v. 3.10.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1074593818 1894870 345 70 500 107 SRX3919529 Unrestricted 27.54 Metagenome 3300003381 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A1-12 DOE Joint Genome Institute (JGI) 3300003381 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 1202640 3975 36 5 67 13 SRX2576249 Unrestricted 0.0 Metagenome 3300014110 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room gowning area microbial communities from NASA Jet Propulsion Laboratory, California, USA - Floor swab, replicate C, treated with PMA SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300014110 Metagenome Analysis SPAdes 3.10.0 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1991 -118.1715 474676 949 0 0 0 1 Unrestricted 0.0 Metagenome 3300013239 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100352 University of Pennsylvania 3300013239 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 24598398 54565 25 5 48 12 SRX756305 0.0 Metagenome 3300001893 *Microbiome Permanent Draft Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils (2) Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils - Sample7 3300001893 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Terrestrial Unclassified Soil Grasslands Grassland soil 23.850674 69.734802 0 0 0 0 0 0 0.0 Metagenome 3300017430 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_NF_22AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017430 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 249302929 444669 58 67 95 97 SRX3926900 Unrestricted 8.98 Metagenome 3300005288 *Microbiome Permanent Draft Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan State University, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) DOE Joint Genome Institute (JGI) 3300005288 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Miscanthus rhizosphere 42.406189 -85.40016 1118706501 2640334 1261 76 2269 150 Unrestricted 0.0 Metagenome 3300035020 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Drouetiella lurida LUKESOVA 1986/6 and co-occurring heterotrophs from soil from City of Most, Zurich, Switzerland - 20181212_18i DOE Joint Genome Institute (JGI) 3300035020 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Tailings Soil Unclassified Soil 47.3732 8.5552 55633386 74145 16 2 27 5 SRX8239129 Unrestricted 206.91 Metagenome 3300025042 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-47 (SPAdes) DOE Joint Genome Institute (JGI) 3300025042 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 50.0008 -145.0003 92507681 206620 45 0 34 1 Unrestricted 0.0 Metagenome 3300065611 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 804 in Youngstown, Alberta, Canada - S00JY_0723 Microbiome Insights 3300065611 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.42228558 -111.0505801 264189722 382606 89 1 131 2 0.0 Metagenome 3300012575 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100358 University of Pennsylvania 3300012575 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14693177 30695 15 4 28 8 SRX756299 0.0 Metagenome 3300050343 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_PBmetag_110427.NPB (version 2) DOE Joint Genome Institute (JGI) 3300050343 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 320921510 332477 176 17 162 15 Unrestricted 0.0 Metagenome 3300023226 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 E2 1-5 DOE Joint Genome Institute (JGI) 3300023226 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0468 69118274 190023 169 2 262 8 SRX4415321, SRX8127835 Unrestricted 0.0 Metagenome 3300003230 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK03-D DOE Joint Genome Institute (JGI) 3300003230 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 136997 457 11 2 26 5 SRX2575246 Unrestricted 0.0 Metagenome 3300021116 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 20SEP2008 hypolimnion DOE Joint Genome Institute (JGI) 3300021116 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 33786504 77778 62 2 74 7 Unrestricted 0.0 Metagenome 3300025962 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025962 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.000637 -121.624207 81205077 185375 134 0 253 0 SRX7143591 Unrestricted 0.0 Metagenome 3300050204 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_4B2_100218_0717 DOE Joint Genome Institute (JGI) 3300050204 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 1952454940 3031401 524 204 957 273 Unrestricted 23.04 Metagenome 7000000426 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 675950834 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000426 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 31617334 70826 0 0 0 0 0.0 Metagenome 2166559006 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - FI (heavy metals 2g/kg) assembled 454 Life Sciences 2166559006 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.804241 -0.372114 48397652 91659 58 7 102 9 0.0 Metagenome 3300048090 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere DOE Joint Genome Institute (JGI) 3300048090 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5882 -123.194 275512121 511017 214 25 387 32 Unrestricted 21.19 Metagenome 3300000927 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 P3 (3) DOE Joint Genome Institute (JGI) 3300000927 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 213842706 385932 177 0 277 1 SRX3311649 Unrestricted 0.0 Metagenome 3300039077 *Microbiome Permanent Draft Freshwater lake viral communities from Lake Michigan, near Chicago, USA Freshwater lake viral communities from Lake Michigan, near Chicago, USA- Wilmette140708.1V Genewiz Inc., Loyola University 3300039077 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 42.0791 -87.683 24344129 48256 38 0 61 0 0.0 Metagenome 3300018411 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater microbial communities from Pennsylvania, USA, analyzing microbe dynamics in response to fracking - TARM_MetaG_T3_14 (version 2) DOE Joint Genome Institute (JGI) 3300018411 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic River Freshwater Unclassified watersheds 41.2451 -76.9856 753948376 1521818 1784 13 3318 26 SRX3886467 Unrestricted 27.57 Metagenome 3300048774 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 S2 10-14 DOE Joint Genome Institute (JGI) 3300048774 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3532 19.0475 384588018 530878 97 4 127 2 Restricted 23.31 Metagenome 3300027677 *Microbiome Permanent Draft Marine microbial communities from oxygen minimum zone in the mesopelagic equatorial Pacific Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_300m (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027677 Metagenome Analysis spades v. 3.11.1 Yes Yes cdupont@jcvi.org Chris L. Dupont No Environmental Aquatic Oceanic Marine Unclassified Marine 8.0 -156.0 483179241 1097378 404 14 535 32 SRX1991080 Unrestricted 0.0 Metagenome 3300060411 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210529_02_05 DOE Joint Genome Institute (JGI) 3300060411 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 802903292 1168232 154 124 228 162 Unrestricted 20.06 Metagenome 3300000207 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 10m DOE Joint Genome Institute (JGI) 3300000207 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 58467364 133148 75 30 153 35 Unrestricted 0.0 Metagenome 3300013725 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00906 Weill Cornell Medical College 3300013725 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.74 -73.89 29687386 37663 11 0 15 0 SRX822869 0.0 Metagenome 3300042257 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA MBR feed microbial communities from membrane bioreactor in Denver, Colorado, USA - FD_D27 DOE Joint Genome Institute (JGI) 3300042257 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Wastewater Mine water Industrial wastewater Produced water MBR feed 39.7823 -104.9101 392518945 586989 319 4 370 13 Unrestricted 22.71 Metagenome 3300020309 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000795 (ERX556064-ERR599104) CEA Genoscope 3300020309 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -62.2658 -49.1658 192869501 448685 135 35 181 76 0.0 Metagenome 3300051200 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Butler, South Dakota, USA - 116_891_SD_DR_1m_c2_T0_16O DOE Joint Genome Institute (JGI) 3300051200 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 45.27223 -97.8369 892845327 1336725 329 4 479 4 Restricted 17.17 Metagenome 3300025368 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Jun08 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025368 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 80786891 188012 84 37 107 66 SRX2565404 Unrestricted 0.0 Metagenome 3300017645 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - eDNA 3rd pass 37_C Kraft MG (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017645 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes JMGladden@lbl.gov John Gladden No Engineered Solid waste Composting Mixed feedstock Commercial compost compost 37.83 -122.29 397948065 646513 398 0 551 1 SRX4808938, SRX4808939 Unrestricted 0.0 Metagenome 3300040781 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Etang de Berre, Marignane, France - D170L3 Genopole Toulouse Midi-Pyrenees 3300040781 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.4847 5.188 531373013 1032166 505 74 829 111 0.0 Metagenome 3300006149 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t14_698P_inflammed - viral_metagenome University of Texas Southwestern Medical Center 3300006149 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 160176588 320938 105 0 149 2 0.0 Metagenome 3300020591 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Organic Plus compost microbial communities from Emeryville, California, USA - eDNA 5th pass 30_C Kraft OP (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300020591 Metagenome Analysis spades v. 3.10.1 Yes Yes JMGladden@lbl.gov John Gladden No Engineered Solid waste Composting Mixed feedstock Commercial compost compost 37.83 -122.29 343503552 564868 216 4 320 7 SRX4063401, SRX4063402 Unrestricted 0.0 Metagenome 3300009891 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY18 University of New South Wales 3300009891 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 16140946 28476 12 0 26 0 0.0 Metagenome 3300002631 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A3a-11 DOE Joint Genome Institute (JGI) 3300002631 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 852222 2902 32 0 55 0 SRX1991139 Unrestricted 0.0 Metagenome 3300028056 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_17JUL2017_LD1 DOE Joint Genome Institute (JGI) 3300028056 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 123382804 223705 13 87 14 159 SRX5345821 Unrestricted 17.31 Metagenome 3300039574 *Microbiome Permanent Draft Glacier soil microbial communities from Mackay Glacier, Antarctica Glacier soil microbial communities from Mackay Glacier, Antarctica - TG5-1 University of Pretoria 3300039574 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Terrestrial Glacier Soil Unclassified Glacier soil -76.728 161.009 108517368 203744 54 1 97 0 0.0 Metagenome 3300025315 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025315 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 1111299723 2728439 918 28 1705 54 SRX1989935, SRX1989936, SRX1989937, SRX1989938 Unrestricted 0.0 Metagenome 3300056900 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M1L_40_42 DOE Joint Genome Institute (JGI) 3300056900 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0036317 -81.5659748 1204364796 1983635 627 2 1029 0 Unrestricted 12.79 Metagenome 3300037485 *Microbiome Permanent Draft Sediment microbial communities from various lakes in Switzerland Sediment microbial communities from Lake Baldegg, Lucerne, Switzerland - LB_15 DOE Joint Genome Institute (JGI) 3300037485 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mark.lever@usys.ethz.ch Mark Alexander Lever No Environmental Aquatic Lake Freshwater Sediment sediment 47.1988 8.2602 532882670 885543 290 6 431 16 SRX9147684 Unrestricted 14.22 Metagenome 3300028588 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T30 DOE Joint Genome Institute (JGI) 3300028588 Metagenome Analysis spades v. 3.11.1 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7416 -117.7042 2735859264 5104941 1012 539 1139 945 SRX5272822 Unrestricted 25.12 Metagenome 3300049195 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - G4_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049195 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 327438217 778332 420 19 706 32 Unrestricted 0.0 Metagenome 3300048798 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-P1(3) 1-5 DOE Joint Genome Institute (JGI) 3300048798 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.355 19.0437 744259948 1132242 177 29 349 35 Restricted 12.65 Metagenome 3300000683 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 60 DOE Joint Genome Institute (JGI) 3300000683 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 6274311 19157 23 0 54 0 SRX4341060 Unrestricted 0.0 Metagenome 3300042733 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - H_c8.2 Re-assembly Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042733 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1237 -89.1404 58291112 58005 4 3 6 5 SRX5234779 0.0 Metagenome 3300054093 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100 re-annotation DOE Joint Genome Institute (JGI) 3300054093 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 735050006 1341134 376 0 632 2 SRX3960075 0.0 Metagenome 3300029306 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Indian Ocean - SCH3 Michigan State University 3300029306 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 1.26600833 103.8333333 51456318 140438 29 0 73 2 0.0 Metagenome 3300006881 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 DOE Joint Genome Institute (JGI) 3300006881 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 5064796517 14977301 3416 215 5845 414 SRX2790521 Unrestricted 0.0 Metagenome 3300053641 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - FS5.061018 DOE Joint Genome Institute (JGI) 3300053641 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.5326 -110.7972 8-9 382177216 995310 262 5 402 8 Unrestricted 61.67 Metagenome 3300009498 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426 DOE Joint Genome Institute (JGI) 3300009498 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 842811895 1556689 735 122 1141 206 SRX2999754 Unrestricted 0.0 Metagenome 3300057173 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2021-2014 DOE Joint Genome Institute (JGI) 3300057173 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.7269 -83.42329 525146389 1144375 474 91 784 135 Unrestricted 15.7 Metagenome 3300001291 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - Naphthalene biodegradation metagenome 13C3doseA DOE Joint Genome Institute (JGI) 3300001291 Metagenome Analysis No Yes elm3@cornell.edu Eugene Madsen Yes 30051558 Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.292222 -73.604444 17161512 35134 14 2 19 3 Unrestricted 0.0 Metagenome 3300009981 *Microbiome Permanent Draft Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_208 metaG DOE Joint Genome Institute (JGI) 3300009981 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes esinger@lbl.gov; twoyke@lbl.gov Esther Singer; Tanja Woyke No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass associated 30.387 -97.7301 38973914 70513 6 29 2 61 SRX2524160 Unrestricted 0.0 Metagenome 3300038527 *Microbiome Permanent Draft Activated sludge microbial communities from CSTR anaerobic reactor in Belvaux, Luxembourg Activated sludge microbial communities from CSTR anaerobic reactor in Belvaux, Luxembourg - CSTR_M28 Luxembourg Institute of Science and Technology 3300038527 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Bioreactor Unclassified Anaerobic Unclassified Activated sludge 49.508281 5.943742 16588876 26089 24 0 53 0 0.0 Metagenome 3300014637 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00320 Weill Cornell Medical College 3300014637 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.8 -73.95 18920606 32004 16 0 18 0 SRX822293 0.0 Metagenome 3300031703 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #34 DOE Joint Genome Institute (JGI) 3300031703 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5735 77.9231 325046450 692515 296 272 372 439 SRX5650060 Unrestricted 19.24 Metagenome 3300056604 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.16W.10 SIP fraction DOE Joint Genome Institute (JGI) 3300056604 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 296874265 543704 117 11 174 14 Unrestricted 15.19 Metagenome 3300020708 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 05NOV2007 hypolimnion DOE Joint Genome Institute (JGI) 3300020708 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 85622164 194736 126 5 206 14 Unrestricted 0.0 Metagenome 3300035329 *Microbiome Permanent Draft Cathode biofilm microbial communities from solar microbial fuel cell (MFC) in Washington, DC, USA Cathode biofilm microbial communities from solar microbial fuel cell (MFC) in Washington, DC, USA - Sample 1 Naval Research Laboratory 3300035329 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Industrial production Unclassified Engineered product Unclassified Cathode biofilm 38.823126 -77.017947 59017077 71692 21 0 25 0 0.0 Metagenome 3300025769 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes) (version 4) DOE Joint Genome Institute (JGI) 3300025769 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu; chenf@umces.edu Barbara Campbell; Feng Chen Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.12 -75.25 577620871 1225812 0 0 0 0 SRX2838064, SRX3786194, SRX3786195 Unrestricted 0.0 Metagenome 2044078009 *Microbiome Permanent Draft Human oral microbial communities from J. Craig Venter Institute, USA Sample 10347 J. Craig Venter Institute 2044078009 Metagenome Analysis released per PI No Yes nckyrpides@lbl.gov Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Unclassified Human oral 27411856 86863 116 0 213 0 0.0 Metagenome 3300021462 *Microbiome Permanent Draft Longitudinal study of halite endolithic microbial communities Halite endolithic microbial communities from Salar Grande, Atacama Desert, Chile - SG1-2015-06 Johns Hopkins University 3300021462 Metagenome Analysis metaSPAdes v.3.11.1 released by JGI data releasing policy Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Halite pinnacle -20.95319 -70.019951 790976118 1164211 159 12 276 9 0.0 Metagenome 3300001627 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF024 DOE Joint Genome Institute (JGI) 3300001627 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 3602557 11065 24 2 35 1 SRX2014339 Unrestricted 0.0 Metagenome 3300069257 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Konza Prairie Bio Station, Kansas, USA - KONZ_024-M-20210719-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069257 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Grasslands Soil Unclassified Terrestrial soil 39.110903 -96.552209 2695978544 5768908 1153 15 2155 30 0.0 Metagenome 3300037539 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR14_NA05 DOE Joint Genome Institute (JGI) 3300037539 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Crustal Fluids crustal fluids 47.761 -127.7612 228213063 482419 259 3 456 8 SRX9096610 Unrestricted 57.81 Metagenome 3300021180 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O DOE Joint Genome Institute (JGI) 3300021180 Metagenome Analysis spades v. 3.10.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 3112761503 6391336 837 121 1448 221 SRX4023408 Unrestricted 14.14 Metagenome 3300025787 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG01_land_8/20/14_3.00 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025787 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 265952821 530649 284 8 400 11 SRX3348116 Unrestricted 0.0 Metagenome 3300045597 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_USB_176 DOE Joint Genome Institute (JGI) 3300045597 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 201640874 346200 240 5 369 6 SRX12657171 Unrestricted 60.62 Metagenome 3300003492 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_200m_DNA DOE Joint Genome Institute (JGI) 3300003492 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 190135563 377232 213 3 346 1 SRX2518460 Unrestricted 0.0 Metagenome 3300034274 *Microbiome Permanent Draft St. Lawrence estuary microbiome Marine microbial community of the St. Lawrence Estuary, Canada - S25_sed_surf Genome Quebec 3300034274 Metagenome Analysis Megahit v. 1.0.6 released by JGI data releasing policy Yes Yes susanne.kraemer@ed.ac.uk Susanne Kraemer No Environmental Aquatic Coastal Marine Unclassified marine 48.175 -69.228 390765686 693111 286 48 596 97 0.0 Metagenome 3300042679 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A52 University of California, Davis 3300042679 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 155766806 434936 228 4 428 8 0.0 Metagenome 3300002096 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection B2 DOE Joint Genome Institute (JGI) 3300002096 Metagenome Analysis SOAPdenovo, Newbler, minimus2 v.1.05, AMOS v3.1.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.53 -107.78 121439435 277091 236 0 418 4 SRX1990958 Unrestricted 0.0 Metagenome 3300011611 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100282 University of Pennsylvania 3300011611 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 18534312 40540 18 0 23 0 SRX756619 0.0 Metagenome 2020350000 *Microbiome Permanent Draft Saline water microbial communities from a Tibetan plateau lake Saline water microbial communities from Qinghai Lake, Tibetan Plateau - High mountain lake (assembled) University of Illinois, Urbana-Champaign 2020350000 Metagenome Analysis Newbler assembly was used released per JGI data release policy No Yes wtliu@illinois.edu Wen-Tso Liu No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline water 36.381 100.218 7447713 17031 6 0 12 0 0.0 Metagenome 3300006991 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human Vaginal introitus microbial communities from NIH, USA - visit 1, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006991 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Introitus Human 39.0042816 -77.1012173 4895831 9024 6 0 11 0 0.0 Metagenome 3300066276 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_001-M-20170829-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066276 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 19865374 60074 46 3 101 2 0.0 Metagenome 3300011476 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00896 Weill Cornell Medical College 3300011476 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.74 -73.93 14693515 26295 11 0 19 0 SRX822859 0.0 Metagenome 7000000250 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764588959 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000250 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 70069287 130792 0 0 0 0 0.0 Metagenome 3300027259 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1568A-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027259 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2861 -123.7318 175254887 383484 187 57 289 92 SRX2753762 Unrestricted 0.0 Metagenome 3300006488 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit number 1 of subject 675950834 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006488 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 82622564 134510 91 0 147 2 0.0 Metagenome 3300024470 *Microbiome Permanent Draft Vaginal microbial communities from lab mice Vaginal microbial communities from healthy lab mice, Madrid, Spain - R0 Polytechnic University of Valencia 3300024470 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Vagina Reproductive system Unclassified mice vagina 40.4191094 -3.6725753 60563190 84026 2 2 3 1 0.0 Metagenome 3300013197 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100406 University of Pennsylvania 3300013197 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9218110 17931 6 5 10 12 SRX756251 0.0 Metagenome 3300048501 *Microbiome Permanent Draft Marine and freshwater sediment microbial communities from various locations Freshwater sediment microbial communities from Lake Michigan, United States - Straits 1 (E) DOE Joint Genome Institute (JGI) 3300048501 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes smtechtm@mtu.edu Stephen Techtmann No Environmental Aquatic Sediment Freshwater Unclassified Freshwater sediment 45.841 -85.1066 614319837 1504695 492 24 844 47 Unrestricted 9.32 Metagenome 3300023261 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S166-409R-6 DOE Joint Genome Institute (JGI) 3300023261 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 301977767 821821 621 27 1200 36 SRX4801358 Unrestricted 7.39 Metagenome 3300026363 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T100 DOE Joint Genome Institute (JGI) 3300026363 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 36055597 66976 63 15 106 14 SRX4550133 Unrestricted 129.88 Metagenome 7000000461 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 604812005 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000461 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 48470086 99246 0 0 0 0 0.0 Metagenome 3300026024 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_ThreeSqC_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026024 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.131752 -122.266335 121982309 285595 175 4 326 6 SRX7146206 Unrestricted 0.0 Metagenome 3300027842 *Microbiome Permanent Draft Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027842 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade Yes 30397342 Environmental Terrestrial Unclassified Soil Unclassified Surface soil 40.7999 -76.3402 1258306584 2847408 640 20 1185 46 SRX2837973 Unrestricted 0.0 Metagenome 3300014186 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_207 The George Washington University (GWU) 3300014186 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 12879569 23218 22 2 30 5 SRX656251 0.0 Metagenome 3300037820 *Microbiome Permanent Draft Bacterial communities from sewage treatment works near Birtley, UK Bioelectrochemical system biofilm bacterial communities from sewage treatment works near Birtley, UK - 27A Northumbria University 3300037820 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes martin.spurr@newcastle.ac.uk Martin Spurr No Engineered Bioreactor Unclassified Anaerobic Unclassified wastewater 54.903212 -1.595078 11410065 23027 69 0 112 0 0.0 Metagenome 3300049201 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - J14_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049201 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 154383117 342156 224 10 415 15 Unrestricted 0.0 Metagenome 3300025293 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025293 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 39.48 4.36 217651404 474714 87 0 119 0 SRX2753805 Unrestricted 0.0 Metagenome 3300040340 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_003-O-20160720-COMP-DNA1 Battelle Memorial Institute 3300040340 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 4518483 13233 33 5 47 8 0.0 Metagenome 3300023076 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L088-202R-2 DOE Joint Genome Institute (JGI) 3300023076 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 431477431 1013028 512 87 806 151 SRX4797469 Unrestricted 10.28 Metagenome 3300022472 *Microbiome Permanent Draft Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain - individual 8 Autonomous University of Barcelona 3300022472 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.38 -0.51 9671306 11789 10 0 15 0 0.0 Metagenome 3300041687 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_355 MetaG AgResearch, New Zealand, Mosgeil 3300041687 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1001809044 2236241 342 17 1057 38 0.0 Metagenome 3300041408 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z062817_5195 DOE Joint Genome Institute (JGI) 3300041408 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.201 -97.9447 459628464 1271025 569 50 1040 88 SRX14829151 Unrestricted 6.17 Metagenome 3300025474 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025474 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 204127190 458077 186 20 303 39 SRX1987640 Unrestricted 0.0 Metagenome 3300049921 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T100 (v3) (version 3) DOE Joint Genome Institute (JGI) 3300049921 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 21163396 35593 29 3 41 8 SRX4550133 Unrestricted 0.0 Metagenome 3300024056 *Microbiome Permanent Draft Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (PacBio error correction) DOE Joint Genome Institute (JGI) 3300024056 Metagenome Analysis metalrec/blasr v. metalrec version 1.0.2/blasr 1.3.1 Yes Yes christopher.s.miller@ucdenver.edu Christopher S. Miller Yes 29146959 Environmental Aquatic Wetlands Freshwater Unclassified Freshwater wetlands 41.384 -82.513 1032371729 1923871 552 7 759 14 SRX5010719, SRX5010717, SRX5010718, SRX5010715, SRX5010716, SRX5010713, SRX5010714, SRX5010711, SRX5010712, SRX5010720, SRX5010710, SRX5010721 Unrestricted 0.0 Metagenome 3300001059 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized -NN620 DOE Joint Genome Institute (JGI) 3300001059 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 39858 117 10 1 21 2 SRX1986999 Unrestricted 0.0 Metagenome 3300053102 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere DOE Joint Genome Institute (JGI) 3300053102 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.120985 -123.271523 466921966 774529 154 72 230 107 Unrestricted 0.0 Metagenome 3300061114 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIIF3SW no PMA treatment Jet Propulsion Laboratory, California Institute of Technology 3300061114 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 7625519 11612 9 1 7 1 SRX3244871, SRX3244860, SRX3808514, SRX3808503 0.0 Metagenome 3300007924 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764143897 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007924 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 130600347 173035 102 1 117 0 0.0 Metagenome 3300056778 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MB19 DOE Joint Genome Institute (JGI) 3300056778 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 34829814 82509 102 7 234 3 Restricted 38.03 Metagenome 3300044798 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Soil microbial communities from peatland in Alberta, Canada - SB-09 mossy 80-90 cm DOE Joint Genome Institute (JGI) 3300044798 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4741 -114.8678 559045064 801523 252 0 379 0 Unrestricted 19.68 Metagenome 3300065518 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 786 in Hanna, Alberta, Canada - S00JY_0048 Microbiome Insights 3300065518 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.31527169 -112.0508909 19152636 28175 19 0 46 0 0.0 Metagenome 3300031334 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #710 DOE Joint Genome Institute (JGI) 3300031334 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4563 78.1898 280025538 508039 117 23 132 46 SRX5649502 Unrestricted 49.9 Metagenome 3300069448 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_007-M-20170719-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069448 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 8560916 26705 51 5 72 6 0.0 Metagenome 3300013404 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100178 University of Pennsylvania 3300013404 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 2636031 6961 3 4 8 9 SRX756355 0.0 Metagenome 3300013942 *Microbiome Permanent Draft Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 150 Chalmers University of Technology 3300013942 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 122511938 257382 133 0 219 0 SRX193528 0.0 Metagenome 3300039907 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 075_R1_022417 University of Maryland 3300039907 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.51524 18.98487 27094412 56181 97 2 164 4 0.0 Metagenome 3300027091 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T2_30-Apr-14 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027091 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 138784077 370825 245 104 433 169 SRX2838889 Unrestricted 0.0 Metagenome 3300006862 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Lake water microbial communities from Ohio, USA - Utica-2 Time Series LW 2014_7_11 DOE Joint Genome Institute (JGI) 3300006862 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Lake Freshwater Unclassified Lake water 40.178 -81.073 0 169549205 324211 176 24 284 38 SRX2925262 Unrestricted 0.0 Metagenome 3300007204 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763961826 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007204 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 97536835 150577 91 0 145 0 0.0 Metagenome 2222084003 *Microbiome Finished Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - Ctl_5_microcosm Alabama State University 2222084003 Metagenome Analysis GS de novo assembly released per JGI data release policy No Yes panoble@washington.edu Peter A Noble No Environmental Aquatic Oceanic Marine Oil-contaminated Marine 30.15 -88.446 7.8 47029477 135628 98 0 145 0 0.0 Metagenome 3300012466 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100342 University of Pennsylvania 3300012466 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 20525403 30844 24 0 39 1 SRX756315 0.0 Metagenome 3300070407 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_024-M-20200731-COMP-DNA1 3300070407 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 47701226 130785 74 11 148 20 0.0 Metagenome 3300070688 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_006-O-20200914-COMP-DNA1 3300070688 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 1002615 2895 19 10 26 23 0.0 Metagenome 3300027169 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N3_10_20 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027169 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37379502 -119.2722385 145539153 368004 173 1 343 5 SRX2522537 Unrestricted 0.0 Metagenome 7000000160 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 764143897 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000160 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2929237 4160 0 0 0 0 0.0 Metagenome 3300027636 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57 HiSeq DOE Joint Genome Institute (JGI) 3300027636 Metagenome Analysis spades v. 3.11.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9888 -108.3994 417913735 886242 368 10 586 12 SRX5783417, SRX5783418 Unrestricted 0.0 Metagenome 3300007620 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1546C-02 DOE Joint Genome Institute (JGI) 3300007620 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2311 -123.8825 327345918 622801 316 15 478 21 SRX2753625 Unrestricted 0.0 Metagenome 3300043366 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 278-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043366 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9786 -107.0376 370134767 1067728 421 12 741 24 Unrestricted 6.07 Metagenome 3300009962 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 17 Autonomous University of Barcelona 3300009962 Metagenome Analysis SPAdes-3.8.1-Linux released per JGI data release policy Yes Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 7410727 13895 7 0 9 1 0.0 Metagenome 3300045423 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-595 Genome Quebec 3300045423 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.67651 -117.658481 1025421482 2192006 494 198 884 354 0.0 Metagenome 3300032106 *Microbiome Permanent Draft Microbial communities from the deep biosphere Marine sediment microbial communities from North Pond in Mid-Atlantic Ridge, Atlantic Ocean - 1383E re-assembly The Marine Biological Laboratory 3300032106 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Sediment Marine Unclassified Sediment 22.8 -46.05 123805678 342267 119 25 241 42 SRX2505630 0.0 Metagenome 3300042243 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D291_1 DOE Joint Genome Institute (JGI) 3300042243 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 213187099 316058 174 8 259 7 Unrestricted 72.04 Metagenome 3300006125 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE13Jul09 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006125 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 275976675 722789 209 61 311 121 SRX2565227 Unrestricted 0.0 Metagenome 3300036807 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - AG5_20m DOE Joint Genome Institute (JGI) 3300036807 Metagenome Analysis metaspades v. 3.13.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified Marine 70.5467 -122.9077 589787922 1251979 354 251 581 352 SRX8132579 Unrestricted 22.2 Metagenome 3300041801 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - TR_29_wk_3 DOE Joint Genome Institute (JGI) 3300041801 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9726 -107.062 172738871 494754 269 10 489 17 SRX14808389 Unrestricted 7.45 Metagenome 3300017629 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - W13-11 University of Michigan 3300017629 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.39757 -85.38536 17331207 23898 16 0 14 0 0.0 Metagenome 3300021481 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L239-10m DOE Joint Genome Institute (JGI) 3300021481 Metagenome Analysis spades v. 3.11.1-check Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.663 -93.723 32613146 94408 61 8 106 16 SRX3984340 Unrestricted 193.85 Metagenome 3300033164 *Microbiome Permanent Draft Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_12_05 R3 DOE Joint Genome Institute (JGI) 3300033164 Metagenome Analysis spades v. 3.13.0 Yes Yes ziels@mail.ubc.ca Ryan Ziels No Engineered Bioreactor Unclassified Anaerobic Unclassified sludge 51.9691 5.6654 296536633 468316 325 0 403 2 SRX7542616 Unrestricted 56.65 Metagenome 3300039036 *Microbiome Permanent Draft Sediment and seawater microbial communities from hydrothermal vent in Taiwan, China Seawater microbial communities from hydrothermal vent in Taiwan, China - W1 Xiamen university 3300039036 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Coastal Marine Unclassified Seawater 24.83414 121.96191 80381928 143040 111 1 179 5 0.0 Metagenome 3300042304 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME12May2016-rr0562 DOE Joint Genome Institute (JGI) 3300042304 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 928718742 1340445 194 20 257 35 Unrestricted 22.45 Metagenome 3300000721 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 41 DOE Joint Genome Institute (JGI) 3300000721 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 15696697 49465 49 0 80 0 SRX4340892 Unrestricted 0.0 Metagenome 3300009042 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T10 (2) BES, Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2) Shell Corporation 3300009042 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com; tianakorin@googlemail.com Ian Head, Ian Head; Nicolas Tsesmetzis; Tetyana Korin No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 110322653 371072 148 0 322 0 0.0 Metagenome 3300000354 *Microbiome Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring microbial communities from Elkhorn Slough, Monterey Bay, USA - CD6A DOE Joint Genome Institute (JGI) 3300000354 Metagenome Analysis released based on JGI ITS Yes Yes jim.fredrickson@pnnl.gov, jim.fredrickson@pnnl.gov; pettridge2@llnl.gov Jim Fredrickson, Jim Fredrickson; Jennifer Pett-Ridge Yes 29167704 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 36.82188 -121.744 90602774 206164 163 21 299 43 Unrestricted 0.0 Metagenome 3300029288 *Microbiome Permanent Draft Leachate and groundwater microbial communities from a municipal landfill and adjacent aquifer in Southern Ontario, Canada Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 137-91 DOE Joint Genome Institute (JGI) 3300029288 Metagenome Analysis spades v. 3.11.1 Yes Yes laura.hug@uwaterloo.ca Laura Hug No Engineered Solid waste Unclassified Landfill Unclassified landfill leachate 43.442 -80.577 2066651250 3975154 2243 6 3461 22 SRX5344198 Unrestricted 12.71 Metagenome 3300043017 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver stomach microbial communities from Maple Ridge, British Columbia, Canada - Beaver5Stomach1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043017 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Stomach Digestive system Unclassified stomach 49.18 -122.54 27567996 61750 11 13 18 14 SRX8346147 Unrestricted 211.57 Metagenome 3300030039 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 008_6_8_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300030039 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 114874187 135636 90 0 131 0 0.0 Metagenome 3300038493 *Microbiome Permanent Draft Acid mine drainage microbial biofilm communities from Richmond Mine, California, USA Acid mine drainage biofilm communities from Richmond mine site AB20, Iron Mt, CA, USA - AMDAB200606DS1 University of California, Berkeley 3300038493 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 40.67542 -122.53025 15579646 22774 11 3 19 2 0.0 Metagenome 3300001105 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP1896 DOE Joint Genome Institute (JGI) 3300001105 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 21.06 -150.35 48466561 108650 62 7 112 8 SRX1982438 Unrestricted 0.0 Metagenome 3300046821 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Hampton in Arden, England, United Kingdom - blythe_2019_sw_WHONDRS-S19S_0092 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300046821 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 52.4198 -1.7043 430406082 684243 399 57 637 55 Unrestricted 0.0 Metagenome 3300003968 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Enrichment cultures from Harmful Algal Blooms in Lake Erie, HABS-00-39860 University of Michigan 3300003968 Metagenome Analysis IDBA-UD v1.1.1 released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lentic Freshwater Unclassified Freshwater -77.611214 163.119356 46624207 56506 29 0 35 0 0.0 Metagenome 3300037812 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18B_3_16_1 mgh University of Alberta 3300037812 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 55572916 70725 18 0 27 0 0.0 Metagenome 3300027187 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S1_50_60 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027187 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen Yes 29920461 Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228249 -119.2718117 132140770 378825 218 2 375 5 SRX2523279 Unrestricted 0.0 Metagenome 3300026298 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026298 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 27843720, 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.718176 -123.652732 608066780 1061026 295 4 428 3 SRX1991122 Unrestricted 0.0 Metagenome 7000000482 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159753524 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000482 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 73021428 129617 0 0 0 0 0.0 Metagenome 3300044501 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_17 DOE Joint Genome Institute (JGI) 3300044501 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 778083815 1746102 534 13 934 22 Unrestricted 8.59 Metagenome 3300040623 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA FertPrarie soil microbial communities from Boone County, Iowa, USA - PF23-MM-July2012 Iowa State University 3300040623 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land FertPrarie soil 42.01375 -93.783837 1289806 4486 32 1 63 0 0.0 Metagenome 3300028470 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_15MAY2017_LD1 DOE Joint Genome Institute (JGI) 3300028470 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 59736318 107204 6 11 4 23 SRX5345784 Unrestricted 24.95 Metagenome 3300050357 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - YNP_CreekBiofilm_2 DOE Joint Genome Institute (JGI) 3300050357 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 143724706 191543 73 6 87 9 Unrestricted 416.9 Metagenome 3300025891 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025891 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.299 -156.61 1090317562 2733890 785 25 1386 59 SRX2901267 Unrestricted 0.0 Metagenome 3300021974 *Microbiome Permanent Draft Characterization of microbial community from Mariana Back Arc Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Perseverance_FS929 _150kmer Marine Biological Laboratory 3300021974 Metagenome Analysis IDBA-UD 1.1.3 Trembath-Reichert et al. ?Active subseafloor microbial communities from Mariana back-arc venting fluids share metabolic strategies across different thermal niches and taxa?, ISMEJ 2019 No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Hydrothermal vent fluids 15.47990499 144.50763029 472881746 912574 482 17 807 14 0.0 Metagenome 3300042448 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME12Jul2006D11-rr0083 DOE Joint Genome Institute (JGI) 3300042448 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 716850139 1096068 233 25 310 47 Unrestricted 19.99 Metagenome 3300021392 *Microbiome Permanent Draft Marine microbial communities from toxin-producing cyanobacterial mats in Guam and Florida Keys Cyanobacterial mat microbial communities from Tanguisson Reef Flat, Guam, USA - VPG14-3B v.2 University of Maryland 3300021392 Metagenome Analysis MEGAHIT v1.1.1 released by JGI data releasing policy No Yes juliemeyer@ufl.edu Julie Meyer No Environmental Aquatic Oceanic Marine Benthic microbial mat 13.54 -144.81 39577843 41499 16 27 20 23 SRX4473298 0.0 Metagenome 3300046675 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere DOE Joint Genome Institute (JGI) 3300046675 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1211 -123.2704 1086777131 1728896 344 125 543 156 Unrestricted 13.79 Metagenome 3300015241 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly) DOE Joint Genome Institute (JGI) 3300015241 Metagenome Analysis see readme v. see readme Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 3207381396 7825421 891 109 1759 166 SRX3049021, SRX3049022, SRX3049023, SRX3049024, SRX3049025, SRX3049026, SRX3049027, SRX3049028, SRX3049029 Unrestricted 0.0 Metagenome 3300011518 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00277 Weill Cornell Medical College 3300011518 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.98 16791430 28298 16 0 18 0 SRX822250 0.0 Metagenome 3300040969 *Microbiome Permanent Draft Mine wastewater microbial communities from active nickel and copper mine in Ontario, Canada Mine wastewater microbial communities from active nickel and copper mine in Ontario, Canada - Enrichment_2 Banfield Lab, University of California, Berkeley 3300040969 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Mine water Industrial wastewater Unclassified mine wastewater 46.983333 -81.533333 25883494 31530 7 0 13 0 0.0 Metagenome 3300045908 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from the Gibbon River area, Yellowstone National Park, WY, United States - MSUNE_GR_03 University of Wisconsin, Madison 3300045908 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.68406 -110.74355 182152508 290263 129 2 184 8 0.0 Metagenome 3300029483 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001857-108 Beijing Genomics Institute (BGI) 3300029483 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 185156118 233212 131 0 196 0 0.0 Metagenome 3300047170 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Western Region, Iceland - Sphagnum subnitens SUB_ICE DOE Joint Genome Institute (JGI) 3300047170 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.583 -21.9821 1269665353 2426297 561 132 898 195 SRX14787326 Unrestricted 7.8 Metagenome 3300000085 *Microbiome Permanent Draft Hot Spring microbial communities from Great Boiling Spring, Nevada Hot spring sediment microbial communities from Great Boiling Spring, Nevada - cellulolytic enrichment CS 77C v1 DOE Joint Genome Institute (JGI) 3300000085 Metagenome Analysis Newbler released based on JGI ITS Yes Yes brian.hedlund@unlv.edu Brian P. Hedlund, Brian Hedlund Yes 23555835, 23673639 Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot Spring 40.71458 -119.369659 6.37 79424423 131945 54 1 79 0 Unrestricted 0.0 Metagenome 3300028807 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186 DOE Joint Genome Institute (JGI) 3300028807 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92030701 -106.94839471 1063307704 2483371 447 4 740 18 SRX5354721 Unrestricted 11.33 Metagenome 3300011359 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01085 Weill Cornell Medical College 3300011359 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.95 20434731 32823 10 0 16 0 SRX823040 0.0 Metagenome 3300012421 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100484 University of Pennsylvania 3300012421 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 2856035 7950 10 0 18 0 SRX756514 0.0 Metagenome 3300011565 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00759 Weill Cornell Medical College 3300011565 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.73 -73.98 19868543 35903 16 0 29 0 SRX822725 0.0 Metagenome 3300048608 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT_PTT1_JUN19_150cm DOE Joint Genome Institute (JGI) 3300048608 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9883 -108.4003 137802156 338598 214 1 399 5 Restricted 22.31 Metagenome 3300040049 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_031-M-20170802-COMP-DNA1 Battelle Memorial Institute 3300040049 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 14027946 41642 73 3 140 10 0.0 Metagenome 3300045228 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_5_E DOE Joint Genome Institute (JGI) 3300045228 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 190240670 226285 111 1 121 1 Unrestricted 100.03 Metagenome 3300070562 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_006-O-20190806-COMP-DNA1 Battelle Memorial Institute 3300070562 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 68.622127 -149.280182 5.22-5.36 13551919 41980 55 2 98 4 0.0 Metagenome 3300013749 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S13-03-R University of California, Los Angeles 3300013749 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 131987493 193422 106 0 146 1 SRX862786 0.0 Metagenome 3300017963 *Microbiome Permanent Draft Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG DOE Joint Genome Institute (JGI) 3300017963 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes valentine@geol.ucsb.edu David Valentine No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Sediment Hypersaline lake sediment 33.3 -115.8 2391632464 4638331 1375 8 2472 18 SRX3905775 Unrestricted 8.62 Metagenome 3300027500 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius filocauda PIANOSA.2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027500 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 500088502 539926 3 2 7 8 SRX3340611 Unrestricted 0.0 Metagenome 7000000509 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 338793263 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000509 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 43125215 60974 0 0 0 0 0.0 Metagenome 3300002417 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP21-MB 3300002417 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300049046 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - D14_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049046 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 386975378 861669 579 20 1059 31 Unrestricted 0.0 Metagenome 3300043514 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-300 Genome Quebec 3300043514 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.888723 -98.313076 1250138163 2951159 585 88 922 157 0.0 Metagenome 3300000173 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2010 P16 500m DOE Joint Genome Institute (JGI) 3300000173 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 49.283333 -134.666667 55538670 137661 38 7 80 11 Unrestricted 0.0 Metagenome 3300014818 *Microbiome Permanent Draft Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0152 : 8 days incubation Battelle Memorial Institute, Gulf Coast Restoration Organization 3300014818 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Marine 63.43 10.43 241798816 385855 61 5 102 10 0.0 Metagenome 3300032233 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada - Lake 06-220 Genome Quebec 3300032233 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.263512 -83.3062 525802606 1141857 313 56 524 140 0.0 Metagenome 3300026274 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-059 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026274 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Permafrost soil 68.6137 -149.3144 217978310 467472 260 4 446 8 SRX2755583 Unrestricted 0.0 Metagenome 3300070870 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_002-M-20200803-COMP-DNA1 Battelle Memorial Institute 3300070870 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.136134 -99.232896 7.53-7.8 22417577 64575 44 3 85 7 0.0 Metagenome 3300005306 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila neotestacea female 1 gut Cornell University 3300005306 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy No Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila neotestacea female adult gut 43.025606 -77.572811 43534246 112380 37 5 70 7 0.0 Metagenome 7000000391 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160380657 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000391 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 14089562 29504 0 0 0 0 0.0 Metagenome 3300003362 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A4w-11 DOE Joint Genome Institute (JGI) 3300003362 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 411423 1406 23 3 63 5 SRX2576240 Unrestricted 0.0 Metagenome 3300034024 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 23HNC DOE Joint Genome Institute (JGI) 3300034024 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological hypolithic biocrust 34.3778 -117.6098 423337740 878223 465 25 806 36 SRX7619822 Unrestricted 10.57 Metagenome 3300012112 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Florida, USA - TSFL088 MetaG DOE Joint Genome Institute (JGI) 3300012112 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 30.4397 -84.4952 85183704 166371 97 448 174 806 SRX3539730 Unrestricted 0.0 Metagenome 3300014865 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT499_16_10D DOE Joint Genome Institute (JGI) 3300014865 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9231 -106.9513 161484946 387152 279 6 566 13 SRX3780474 Unrestricted 4.67 Metagenome 3300053135 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 endosphere DOE Joint Genome Institute (JGI) 3300053135 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.587646 -123.193454 882126040 1257514 90 168 132 217 Unrestricted 0.0 Metagenome 3300040987 *Microbiome Finished Lab enrichment of production water microbial communities from petroleum reservoir, Carmopolis, SE, Brazil Lab enrichment of production water microbial communities from petroleum reservoir, Carmopolis, SE, Brazil - YPD Federal University of Rio Grande do Norte 3300040987 Metagenome Analysis spades v. 3.10.1 released by JGI data releasing policy No Yes lfagnez@ufrnet.br Lucymara Agnez-Lima No Engineered Wastewater Petrochemical Industrial wastewater Unclassified production water from oil reservoir -10.6453 -36.9891 6354601 9600 5 0 5 0 0.0 Metagenome 3300011758 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00431 Weill Cornell Medical College 3300011758 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.72 -73.84 34084870 55360 16 0 20 0 SRX822400 0.0 Metagenome 3300009769 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA5_MetaG DOE Joint Genome Institute (JGI) 3300009769 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 37.43 138.83 916135866 1689732 854 3 1391 15 SRX2338994 Unrestricted 0.0 Metagenome 3300041923 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_480 MetaG AgResearch, New Zealand, Mosgeil 3300041923 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1948724048 4009468 390 22 1338 50 0.0 Metagenome 3300051365 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - HDCR1C-14 DOE Joint Genome Institute (JGI) 3300051365 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 228507797 379722 210 8 288 14 Unrestricted 64.72 Metagenome 3300012828 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched millipede-associated microbial communities from UW Madison campus, WI, USA - HID1971K_E0 MG DOE Joint Genome Institute (JGI) 3300012828 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 83073489 122941 78 2 108 2 SRX3564458 Unrestricted 0.0 Metagenome 3300031146 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_9 DOE Joint Genome Institute (JGI) 3300031146 Metagenome Analysis spades v. 3.12.0 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 113056121 149120 93 0 129 0 SRX5661641 Unrestricted 173.14 Metagenome 3300001132 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 10 DOE Joint Genome Institute (JGI) 3300001132 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 14817980 40680 52 5 96 16 SRX1984681 Unrestricted 0.0 Metagenome 3300042167 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from diseased Eunicella gazella from Algarve, Portugal - EG16N v2 Molecular Research LP (MR DNA) 3300042167 Metagenome Analysis Metawrap workflow v. 1.0.8 released by JGI data releasing policy Yes Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 23809441 28460 15 1 19 4 0.0 Metagenome 3300019760 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - BB_4_MG DOE Joint Genome Institute (JGI) 3300019760 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Microbial mats Freshwater microbial mat 38.7906 -75.1644 301646220 554233 621 18 944 32 SRX3982508 Unrestricted 8.08 Metagenome 3300010054 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from Cariaco Basin, Caribbean Sea - 27_WHOI_OMZ DOE Joint Genome Institute (JGI) 3300010054 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 10.847 -65.114 101500707 164545 167 0 309 0 SRX3197359, SRX3197358 Unrestricted 0.0 Metagenome 3300025498 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_11_150 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025498 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 289491134 527198 164 2 241 1 SRX3003643 Unrestricted 0.0 Metagenome 3300059784 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059784 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 295134589 673714 352 51 527 80 SRX2753513 Unrestricted 0.0 Metagenome 3300042841 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195 NMDC pilot DOE Joint Genome Institute (JGI) 3300042841 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040592 -106.9484972 1548187255 3637608 706 12 1330 27 SRX5355399 0.0 Metagenome 3300064911 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 703 in Westerose, Alberta, Canada - S00JY_0138 Microbiome Insights 3300064911 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.55466504 -113.5615402 6952542 10884 14 0 31 0 0.0 Metagenome 3300025981 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025981 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 3972487726 9734611 1620 113 2998 220 SRX2782917 Unrestricted 0.0 Metagenome 3300014122 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In1P SAF170 SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300014122 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1 -118.1 10817262 18027 9 2 27 8 Unrestricted 0.0 Metagenome 3300011437 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT736_2 DOE Joint Genome Institute (JGI) 3300011437 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8895 -106.9077 485877651 1059152 420 44 765 72 SRX3539213 Unrestricted 0.0 Metagenome 3300008119 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA University of Michigan 3300008119 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.8271 -83.1945 8.578 528666671 855210 528 257 779 413 0.0 Metagenome 3300006797 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_09_40cm DOE Joint Genome Institute (JGI) 3300006797 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2738091623 6195959 2234 81 3904 116 SRX2726956 Unrestricted 0.0 Metagenome 3300035012 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Myxacorys chilensis ATA2-1-KO14 and co-occurring heterotrophs from soil from Atacama Desert, Chile - 20181123_31 DOE Joint Genome Institute (JGI) 3300035012 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Soil crust Soil Biological Soil -29.3164 -71.2486 31294528 44832 18 2 22 2 SRX8239051 Unrestricted 432.92 Metagenome 3300020698 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 25AUG2008 hypolimnion DOE Joint Genome Institute (JGI) 3300020698 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 76825112 162719 75 5 149 10 Unrestricted 0.0 Metagenome 3300008593 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human right retroauricular crease microbial communities from NIH, USA - visit 2, subject 763961826 replicate 1 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008593 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 17552904 31733 26 2 44 6 SRX024914 0.0 Metagenome 3300042189 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A9 University of California, Davis 3300042189 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 236945363 660352 320 6 625 9 0.0 Metagenome 3300013656 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00982 Weill Cornell Medical College 3300013656 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.6 -73.81 13245281 19143 15 0 14 0 SRX822944 0.0 Metagenome 3300043321 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-362 Genome Quebec 3300043321 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.542953 -106.012079 857123733 2001589 290 42 447 78 0.0 Metagenome 3300002145 *Microbiome Permanent Draft Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds S2t7BSb (114f) 3300002145 Metagenome Analysis released by JGI data releasing policy No Yes daniel.herlemann@io-warnemuende.de, daniel.herlemann@emu.ee Daniel Herlemann, Daniel P. Herlemann No Environmental Aquatic Unclassified Unclassified Unclassified Marine 57.305 20.0745 439790123 1848311 403 70 937 103 0.0 Metagenome 3300043754 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Para, Brazil - FS31 DOE Joint Genome Institute (JGI) 3300043754 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -3.3013 -54.8902 1090971795 2492243 453 21 802 34 Unrestricted 10.13 Metagenome 3300009787 *Microbiome Permanent Draft Host-associated microbial communities from peat moss Sphagnum species from Minnesota, USA Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fa - Sphagnum fallax MG DOE Joint Genome Institute (JGI) 3300009787 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes joel.kostka@biology.gatech.edu Joel Kostka No Host-associated Plants Unclassified Peat moss Unclassified Host-associated 47.5028 -93.4828 3045812130 4727724 1231 966 1611 1661 SRX3363418 Unrestricted 0.0 Metagenome 3300069243 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from National Grasslands LBJ, Texas, USA - CLBJ_040-M-20210503-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069243 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Grasslands Soil Unclassified Terrestrial soil 33.37882 -97.64669 2183496814 4978898 1181 33 2235 49 0.0 Metagenome 3300013348 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100373 University of Pennsylvania 3300013348 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14758488 48038 52 9 98 18 SRX756284 0.0 Metagenome 3300014676 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01304 Weill Cornell Medical College 3300014676 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.87 -73.83 33267627 53456 25 0 32 0 SRX823244 0.0 Metagenome 3300002538 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-212 DOE Joint Genome Institute (JGI) 3300002538 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2905 -156.788708 420728427 875414 427 3 791 3 SRX1990903 Unrestricted 0.0 Metagenome 3300000766 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 hypolimnion DOE Joint Genome Institute (JGI) 3300000766 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu, tmcmahon@engr.wisc.edu; rrmalmstrom@lbl.gov Katherine McMahon, Katherine McMahon; Rex Malmstrom Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300044774 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_185 DOE Joint Genome Institute (JGI) 3300044774 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 608682995 1444258 463 7 816 13 Unrestricted 7.58 Metagenome 3300031693 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - CBN3_33.1 DOE Joint Genome Institute (JGI) 3300031693 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified Marine 80.9595 -132.1842 839971180 1736450 811 123 1224 223 SRX5798551 Unrestricted 13.8 Metagenome 3300030330 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_125 - TARA_R100000805 CEA Genoscope 3300030330 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -8.9111 -142.5571 203629989 401801 15 0 34 0 0.0 Metagenome 3300047525 *Microbiome Permanent Draft Floating fern leaf microbial communities from various locations Floating fern leaf microbial communities from Oakland, California, United States - UCBG_FI_1 DOE Joint Genome Institute (JGI) 3300047525 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dave.armitage@gmail.com David Armitage No Host-associated Plants Phylloplane/Leaf Phyllosphere Endophytes Leaf 37.8754 -122.2396 36347805 42597 15 1 33 2 Unrestricted 784.44 Metagenome 3300056794 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.16W.12 SIP fraction DOE Joint Genome Institute (JGI) 3300056794 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 57062659 113109 81 27 148 48 Unrestricted 9.7 Metagenome 3300049758 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought DOE Joint Genome Institute (JGI) 3300049758 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 295329733 636719 356 35 730 53 Unrestricted 17.62 Metagenome 3300013567 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100099 University of Pennsylvania 3300013567 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 1446352 4260 8 0 16 1 SRX756731 0.0 Metagenome 3300054111 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FL_01 DOE Joint Genome Institute (JGI) 3300054111 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.407926 -82.180036 86446515 138719 7 5 11 6 Restricted 268.63 Metagenome 3300001134 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O1 DOE Joint Genome Institute (JGI) 3300001134 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 4133869 13404 141 77 264 115 SRX3311923 Unrestricted 0.0 Metagenome 2124908031 *Microbiome Permanent Draft Hot spring nanoarchaeal communities from Obsidian Pool, Yellowstone National Park Obsidian Pool HudsonAlpha Institute for Biotechnology, Oak Ridge National Laboratory 2124908031 Metagenome Analysis released per JGI data release policy No Yes podarm@ornl.gov Mircea Podar No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6 -110.433 8362165 17835 5 0 15 0 0.0 Metagenome 3300034651 *Microbiome Permanent Draft Processed tobacco microbial communities from Sudan, Africa Processed tobacco microbial communities from Sudan, Africa Database_update_reanalysis Centers for Disease Control and Prevention (CDC), USA 3300034651 Metagenome Analysis SPADES Meta v. 3.10 released by Tyx Yes Yes wyu3@cdc.gov Robert E. Tyx No Engineered Food production Unclassified Unclassified Unclassified Processed tobacco 15.6281 32.538 96759128 123773 46 4 113 7 0.0 Metagenome 3300041760 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_480 MetaG AgResearch, New Zealand, Mosgeil 3300041760 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1700968868 3035893 286 27 1112 66 0.0 Metagenome 3300045167 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_7_F DOE Joint Genome Institute (JGI) 3300045167 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 220177429 250650 135 1 148 2 Unrestricted 121.95 Metagenome 3300035014 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Brasilonema octagenarum HA4186-MV1 and co-occurring heterotrophs from rock surface from Manoa Valley, Hawaii, United States - 20181204_8 DOE Joint Genome Institute (JGI) 3300035014 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Rock surface 21.311 -157.823 61674154 62144 32 0 19 0 SRX8239062 Unrestricted 201.41 Metagenome 3300049437 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Woodchip biofilm microbial communities from lab scale WBR in Cornell University, Ithaca, NY, USA - rep3_cs_p2_w0 DOE Joint Genome Institute (JGI) 3300049437 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 2069594703 4143452 1099 62 1789 112 Unrestricted 11.8 Metagenome 3300010052 *Microbiome Permanent Draft Microbial community associated with the xenic strain of Eucapsis sp. UTEX 1519 Microbial community associated with the xenic strain of Eucapsis sp. UTEX 1529 Oregon State University 3300010052 Metagenome Analysis Spades 3.8 released per JGI data release policy No Yes benjamin.philmus@oregonstate.edu Benjamin Philmus No Environmental Aquatic Unclassified Unclassified Unclassified liquid 575533331 750410 172 2 196 2 0.0 Metagenome 3300026086 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_250_ad_251m_LV_A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026086 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 296687271 685043 280 22 483 31 SRX2779447 Unrestricted 0.0 Metagenome 3300059782 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059782 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 694528572 1586004 818 159 1347 247 SRX2753549 Unrestricted 0.0 Metagenome 3300037143 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 P2 30-34 DOE Joint Genome Institute (JGI) 3300037143 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0473 616111155 1133743 226 5 364 9 SRX8144964 Unrestricted 9.01 Metagenome 3300025713 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC077_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025713 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 42.35 -70.96 581416298 987646 576 1 757 0 SRX2338987 Unrestricted 0.0 Metagenome 3300004247 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 105_HOW12 DOE Joint Genome Institute (JGI) 3300004247 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 44267068 96844 35 0 69 0 SRX2721180 Unrestricted 0.0 Metagenome 3300033416 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C DOE Joint Genome Institute (JGI) 3300033416 Metagenome Analysis spades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified soil 41.3778 -82.5111 6019229011 13632511 2581 7 4783 13 SRX6871089 Unrestricted 9.35 Metagenome 3300032012 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3 DOE Joint Genome Institute (JGI) 3300032012 Metagenome Analysis spades v. 3.13.0 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Bulk soil soil 39.6475 -79.9369 2561938476 6450661 1643 34 3001 69 SRX5809880 Unrestricted 7.19 Metagenome 3300044265 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - AT2-8-2-19 DOE Joint Genome Institute (JGI) 3300044265 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.3019 -120.5972 325578391 836674 500 40 851 72 Restricted 8.1 Metagenome 3300003580 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_10m_DNA DOE Joint Genome Institute (JGI) 3300003580 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 169479973 319353 196 27 331 42 Unrestricted 0.0 Metagenome 3300045189 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_7_E DOE Joint Genome Institute (JGI) 3300045189 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 210166734 237644 123 1 149 2 Unrestricted 102.72 Metagenome 3300071055 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_006-O-20200106-COMP-DNA1 3300071055 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 30534707 80409 35 8 90 8 0.0 Metagenome 3300043752 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Para, Brazil - FS12 DOE Joint Genome Institute (JGI) 3300043752 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -2.7058 -54.7855 958490759 2514511 501 8 886 10 Unrestricted 8.17 Metagenome 3300069423 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_002-M-20131112-COMP-DNA1 re-annotation Argonne National Laboratory 3300069423 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 6261198 20265 34 4 64 10 0.0 Metagenome 3300026558 *Microbiome Permanent Draft Army ant gut microbial communities Army ant gut microbial communities from Labidus praedator, Monteverde, Costa Rica - colony MVLprae1 University of California, Berkeley 3300026558 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy Yes Yes jar337@drexel.edu Jacob Russell No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Army ant gut 10.3 -84.8 201551031 201207 9 275 10 599 0.0 Metagenome 3300005145 *Microbiome Permanent Draft Enrichment culture microbial communities from Rutgers university that are MTBE-degrading Enrichment culture microbial communities om Arthur Kill intertidal strait, New Jersey, USA, that are MTBE-degrading - MTBE-AKS2 (Arthur Kill Sulfidogenic replicate 2) MetaG DOE Joint Genome Institute (JGI) 3300005145 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes haggblom@aesop.rutgers.edu, haggblom@rutgers.edu Max M Haggblom, Max M. Haggblom No Environmental Aquatic Intertidal zone Marine Sediment Enrichment culture 40.58 -74.2 627772965 1196947 481 0 713 1 SRX3195285 Unrestricted 0.0 Metagenome 3300070380 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_004-M-20180710-COMP-DNA1 3300070380 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 25599554 81906 85 6 163 5 0.0 Metagenome 3300013589 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100341 University of Pennsylvania 3300013589 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3991325 8111 4 5 16 8 SRX756316 0.0 Metagenome 3300042335 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Aug2000-rr0408 DOE Joint Genome Institute (JGI) 3300042335 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1176883794 1768869 438 25 546 41 Unrestricted 23.36 Metagenome 3300031938 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1 DOE Joint Genome Institute (JGI) 3300031938 Metagenome Analysis spades v. 3.12.0 Yes Yes icelab@berkeley.edu Steven Lindow No Environmental Terrestrial Agricultural land Soil Unclassified soil 37.8864 -122.2981 5725038480 13438982 2801 140 4581 286 SRX5803379 Unrestricted 8.09 Metagenome 3300029096 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 172_12M Beijing Genomics Institute (BGI) 3300029096 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 95327105 118841 75 0 122 0 ERX490965 0.0 Metagenome 3300044772 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_255 DOE Joint Genome Institute (JGI) 3300044772 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 489367280 1203983 397 20 728 27 Unrestricted 7.21 Metagenome 3300056792 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 E1 1-5 (re-filtered) (version 2) DOE Joint Genome Institute (JGI) 3300056792 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.35444 19.0458967 92276923 107748 32 2 38 2 Restricted 17.33 Metagenome 3300005538 *Microbiome Permanent Draft Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 DOE Joint Genome Institute (JGI) 3300005538 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shadeash@msu.edu, shade.ashley@gmail.com Ashley Shade Yes 30397342 Environmental Terrestrial Unclassified Soil Unclassified Surface soil 40.7999 -76.3402 2840045350 7845652 1731 132 3020 203 SRX2837963 Unrestricted 0.0 Metagenome 3300044218 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T20 S DOE Joint Genome Institute (JGI) 3300044218 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.6999 -64.1919 352595873 835522 55 5 86 5 Unrestricted 46.33 Metagenome 3300026319 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026319 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 683868780 1149400 282 16 439 30 SRX2564901 Unrestricted 0.0 Metagenome 3300022891 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L136-409B-6 DOE Joint Genome Institute (JGI) 3300022891 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 562494747 1175482 527 100 982 174 SRX4801086 Unrestricted 9.53 Metagenome 3300011803 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00979 Weill Cornell Medical College 3300011803 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.61 -73.81 19191337 31432 14 0 16 0 SRX822941 0.0 Metagenome 3300045448 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-666 Genome Quebec 3300045448 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.199099 -125.67783 846856279 1897767 419 93 748 179 0.0 Metagenome 3300012241 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01101 Weill Cornell Medical College 3300012241 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.95 31123898 38172 13 0 28 0 SRX823056 0.0 Metagenome 3300013435 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100702 University of Pennsylvania 3300013435 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8497126 15991 22 9 40 20 SRX756148 0.0 Metagenome 3300029631 *Microbiome Permanent Draft Seawater microbial communities from Ross Sea, Antarctic Ocean Seawater microbial communities from Ross Sea, Antarctic Ocean - 124LC-38360620 Institute for Systems Biology 3300029631 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Seawater -76.4986 -179.9884 12103951 16705 18 0 48 0 0.0 Metagenome 3300049518 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I22_B_5_control DOE Joint Genome Institute (JGI) 3300049518 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 267441265 543302 355 40 767 60 Unrestricted 15.23 Metagenome 3300021972 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - L2m2 DOE Joint Genome Institute (JGI) 3300021972 Metagenome Analysis spades v. 3.11.1-check Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.8825 -106.9105 125067366 299244 201 16 435 30 SRX3958618, SRX3958617 Unrestricted 0.0 Metagenome 3300042908 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Oct2017-rr0237 DOE Joint Genome Institute (JGI) 3300042908 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 912139601 1363658 383 80 458 125 Unrestricted 16.81 Metagenome 3300021394 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2016_1, 0.2 Toyama Prefectural University 3300021394 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Sediment marine 36.96723 137.36471 51610190 137648 26 2 42 7 0.0 Metagenome 3300000617 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 11AUG2009 hypolimnion DOE Joint Genome Institute (JGI) 3300000617 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300071109 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_054-M-20190617-COMP-DNA1 3300071109 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 5892069 19908 53 2 82 6 0.0 Metagenome 3300049359 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - 3-2 DOE Joint Genome Institute (JGI) 3300049359 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 195115093 534864 272 6 493 8 Unrestricted 7.12 Metagenome 3300070231 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_044-O-20200806-COMP-DNA1 3300070231 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 16135390 40394 53 16 88 19 0.0 Metagenome 3300049565 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - TCR_101317 DOE Joint Genome Institute (JGI) 3300049565 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Unclassified Soil Grasslands soil 41.8858 -89.3241 575975031 1392306 362 10 676 33 Unrestricted 0.0 Metagenome 3300025553 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 210-3 deep-092012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025553 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 294247242 579287 162 5 259 9 SRX1987664 Unrestricted 0.0 Metagenome 3300042228 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D194_3 DOE Joint Genome Institute (JGI) 3300042228 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 165475403 227871 100 5 148 15 Unrestricted 82.46 Metagenome 3300009547 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_20_40 DOE Joint Genome Institute (JGI) 3300009547 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 312655503 531243 157 3 250 2 SRX3005972 Unrestricted 0.0 Metagenome 3300043512 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-370 Genome Quebec 3300043512 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 53.449373 -116.779894 1020784157 2260709 411 125 781 237 0.0 Metagenome 3300026272 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil leachate replicate DNA2013-203 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026272 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Permafrost Soil 68.6137 -149.3144 290975663 535535 186 12 256 24 SRX2739543 Unrestricted 0.0 Metagenome 7000000736 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 763678604 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000736 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 195916482 310985 0 0 0 0 0.0 Metagenome 3300014503 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 9_B Beijing Genomics Institute (BGI) 3300014503 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 5304497 5144 9 0 8 0 ERX491321 0.0 Metagenome 3300070564 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_041-O-20180806-COMP-DNA1 Battelle Memorial Institute 3300070564 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 68.666666 -149.369752 5.13-5.78 1392391 4861 30 3 42 3 0.0 Metagenome 3300026718 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A4-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026718 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 17371584 58051 70 1 146 6 SRX1991288 Unrestricted 0.0 Metagenome 3300002306 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 31AUG2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002306 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 32760054 83199 76 12 140 25 SRX1989907 Unrestricted 0.0 Metagenome 3300035233 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P4_June_2015_500m DOE Joint Genome Institute (JGI) 3300035233 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 48.65 -126.6666 623897178 1558605 494 51 880 78 SRX8192083 Unrestricted 14.8 Metagenome 3300024960 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 25_LOW6 (SPAdes) DOE Joint Genome Institute (JGI) 3300024960 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 86472961 139478 44 0 54 0 SRX2720163 Unrestricted 0.0 Metagenome 3300026765 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A1-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300026765 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 12040499 40665 70 1 117 3 SRX1991131 Unrestricted 0.0 Metagenome 3300011966 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00603 Weill Cornell Medical College 3300011966 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.77 -73.95 68757867 121310 30 0 48 0 SRX822570 0.0 Metagenome 3300017720 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 6 SPOT_SRF_2009-12-23 DOE Joint Genome Institute (JGI) 3300017720 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 348470807 856127 87 17 149 45 SRX7207079, SRX7207078 Unrestricted 0.0 Metagenome 3300048009 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_190703.NP1 DOE Joint Genome Institute (JGI) 3300048009 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 644833155 1380582 349 48 571 84 Unrestricted 13.43 Metagenome 3300008737 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 338793263 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008737 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 57496542 75246 42 0 66 0 0.0 Metagenome 3300010297 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNA DOE Joint Genome Institute (JGI) 3300010297 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 37.1849 -76.1104 568217125 1247699 288 63 475 191 SRX2526855 Unrestricted 0.0 Metagenome 3300024040 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant dump, University of Wisconsin, Madison, United States - 3A110A (version 2) DOE Joint Genome Institute (JGI) 3300024040 Metagenome Analysis spades v. 3.11.1 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0758 -89.4125 90084323 115830 49 3 50 4 SRX4821881 Unrestricted 0.0 Metagenome 3300003364 *Microbiome Permanent Draft Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland, that are autotrophic Deep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/21 DOE Joint Genome Institute (JGI) 3300003364 Metagenome Analysis Yes Yes rizlan.bernier-latmani@epfl.ch Rizlan Bernier-Latmani Yes 27739431 Environmental Aquatic Groundwater Deep subsurface Porewater Deep subsurface 47.379 7.1648 81327445 135168 116 4 190 6 SRX957928 Unrestricted 0.0 Metagenome 3300012114 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Club Lake, Antarctica - Metagenome TFF #397 DOE Joint Genome Institute (JGI) 3300012114 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5417 78.2467 84310686 169200 63 5 122 6 SRX3241972 Unrestricted 0.0 Metagenome 3300034022 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058 DOE Joint Genome Institute (JGI) 3300034022 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1443920758 2759569 521 102 723 184 SRX7621970 Unrestricted 12.98 Metagenome 3300020161 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erken, Sweden Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1 SciLifeLab 3300020161 Metagenome Analysis megahit v. 1.0.3 released per PI No Yes rhiannon.mondav@gmail.com Rhiannon Mondav No Environmental Aquatic Lake Freshwater Unclassified Freshwater 59.83763399 18.6203826 732748740 1545532 465 164 712 255 0.0 Metagenome 3300009964 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 5 Autonomous University of Barcelona 3300009964 Metagenome Analysis SPAdes-3.8.1-Linux released per JGI data release policy Yes Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 8329695 15746 6 0 10 0 0.0 Metagenome 3300013640 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100721 University of Pennsylvania 3300013640 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 7066931 16024 22 2 44 5 SRX756129 0.0 Metagenome 3300030373 *Microbiome Permanent Draft Surface and well water microbial communities from Bara Haldia, Bangladesh Well water microbial communities from Bangladesh - BaraHaldiaGW0709 University of Tennessee 3300030373 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Groundwater Freshwater Unclassified Well water 23399601 43637 17 0 23 0 0.0 Metagenome 3300070947 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_005-O-20190716-COMP-DNA1 3300070947 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 11875994 37713 57 8 106 9 0.0 Metagenome 3300035106 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B5.5_Sample5.Rodeo5.Well1210 DOE Joint Genome Institute (JGI) 3300035106 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 169878033 307239 174 1 313 1 SRX8354379 Unrestricted 49.49 Metagenome 3300045243 *Microbiome Permanent Draft Forest soil microbial communities from boreal-temperate forests in Minnesota, USA Forest soil microbial communities from Hubachek Wilderness Research Center, Ely, Minnesota, USA - Ely AMB WO J2 DOE Joint Genome Institute (JGI) 3300045243 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pankaj.trivedi@colostate.edu Pankaj Trivedi No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 47.55 -92.3 355962708 609721 173 4 300 14 Unrestricted 16.46 Metagenome 3300020390 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100002049 (ERX555953-ERR598985) CEA Genoscope 3300020390 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 25.6405 -88.4085 897664446 2263128 600 38 1080 71 0.0 Metagenome 3300033162 *Microbiome Permanent Draft Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_15_08-R3 DOE Joint Genome Institute (JGI) 3300033162 Metagenome Analysis spades v. 3.13.0 Yes Yes ziels@mail.ubc.ca Ryan Ziels No Engineered Bioreactor Unclassified Anaerobic Unclassified sludge 51.9691 5.6654 318546313 456874 344 0 396 0 SRX7542639 Unrestricted 56.7 Metagenome 3300042302 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2017-rr0456 DOE Joint Genome Institute (JGI) 3300042302 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 810050458 1187820 191 29 253 28 Unrestricted 21.26 Metagenome 3300012937 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015 Shell Corporation 3300012937 Metagenome Analysis idba_ud released by JGI data releasing policy No Yes nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis No Environmental Terrestrial Ranch Soil Agricultural land soil 52.172047 -113.738964 2592275199 10705273 1260 26 2558 78 0.0 Metagenome 3300021378 *Microbiome Permanent Draft Coastal seawater microbial communities from Pivers Island, North Carolina, United States Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131 DOE Joint Genome Institute (JGI) 3300021378 Metagenome Analysis spades v. 3.11.1-check Yes Yes dana.hunt@duke.edu Dana Hunt No Environmental Aquatic Coastal Marine Unclassified seawater 34.7181 -76.6707 1217342592 2498187 677 203 977 311 SRX4010393 Unrestricted 19.33 Metagenome 3300003649 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring water microbial communities from Wilbur Hot Springs, California, USA - Wilbur Geyser funnel - 6/17/14 DOE Joint Genome Institute (JGI) 3300003649 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes rstepanauskas@bigelow.org, rstepanauskas@bigelow.org; jkjarett@lbl.gov Ramunas Stepanauskas, Ramunas Stepanauskas; Jessica Jarett No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Aquatic 39.039162 -122.42147 7.98 27908441 52038 38 0 71 0 Unrestricted 0.0 Metagenome 3300000352 *Microbiome Draft Alkaline sediment microbial communities from Soda lakes and Soda Solonchak soils Alkaline sediment microbial communities from bioreactor in Germany - TP_S3 DOE Joint Genome Institute (JGI) 3300000352 Metagenome Analysis released based on JGI ITS Yes Yes g.muijzer@uva.nl Gerard Muyzer No Environmental Aquatic Alkaline Non-marine Saline and Alkaline Sediment Alkaline sediment 53.109 8.845 57866727 100117 62 0 86 0 Unrestricted 0.0 Metagenome 3300009044 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Final time point T34 (3) (live) benzoate enrichments of Methanogenic microbial communities using Athabasca oil sands as inoculum DE NOVO (2) Shell Corporation 3300009044 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 86363918 239165 109 0 209 0 0.0 Metagenome 3300069335 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_034-O-20170731-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069335 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 86894796 251593 129 21 207 35 0.0 Metagenome 3300043685 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - Rondonia_Pasture_1_A1m DOE Joint Genome Institute (JGI) 3300043685 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.163 -62.836 778285033 2189216 674 12 1328 22 Unrestricted 6.89 Metagenome 3300003516 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Antarctic ocean - Station_363 -- 0.8 um J. Craig Venter Institute (JCVI) 3300003516 Metagenome Analysis No Yes jhoffman@jcvi.org, r.cavicchioli@unsw.edu.au Hoffman, Jeff, Rick Cavicchioli Yes 21124488 Environmental Aquatic Oceanic Marine Photic zone Freshwater -60.00007 141.23353 77909508 239389 112 31 177 68 0.0 Metagenome 3300004163 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 56_HOW8 DOE Joint Genome Institute (JGI) 3300004163 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 78943727 166509 75 14 141 20 SRX2720607 Unrestricted 0.0 Metagenome 3300026010 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_103 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026010 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 73050138 197142 154 3 268 5 SRX2564680, SRX2581039 Unrestricted 0.0 Metagenome 3300033480 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B DOE Joint Genome Institute (JGI) 3300033480 Metagenome Analysis spades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified soil 41.3776 -82.5117 4642766721 11029660 2653 6 4937 22 SRX6871087 Unrestricted 7.77 Metagenome 3300037814 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18B_4_0 mgh University of Alberta 3300037814 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 47412358 61345 22 2 27 4 0.0 Metagenome 3300031150 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4 DOE Joint Genome Institute (JGI) 3300031150 Metagenome Analysis spades v. 3.12.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sandy soil 49.2598372 -123.2459363 366412634 981975 627 20 1145 29 SRX5338652 Unrestricted 8.14 Metagenome 3300043959 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_USB_126 DOE Joint Genome Institute (JGI) 3300043959 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 146918507 215833 130 6 185 8 SRX12656446 Unrestricted 75.04 Metagenome 3300039115 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog77 BILS 3300039115 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 11372923 28751 24 3 20 4 ERX1594899 0.0 Metagenome 3300038718 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Sweden Surface water microbial communities from sewage treatment plant in Sweden - SWESTP57 - Uppsala-treated 169 University of Gothenburg 3300038718 Metagenome Analysis Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified surface water 59.844519 17.659844 106558248 290689 232 28 432 67 0.0 Metagenome 3300023284 *Microbiome Permanent Draft Microbial communities of deep seafloor calcareous sediment with volcaniclastic crumbs from southwestern Indian Ocean Marine sediment microbial communities from southwestern Indian Ocean - DY125-40IV-SWIR-S004-TVG04 Third Institute of Oceanography, State Oceanic Administration 3300023284 Metagenome Analysis idba v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Sediment Marine Unclassified sediment -37.78333 49.71667 1712165015 3420997 384 16 866 14 0.0 Metagenome 2014642001 *Microbiome Permanent Draft Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) - 4_Below_base_of_euphotic_200m DOE Joint Genome Institute (JGI) 2014642001 Metagenome Analysis No Yes delong@mit.edu Edward DeLong Yes 16439655 Environmental Aquatic Oceanic Marine Photic zone Marine 22.45 -158.0 7829659 11155 2 0 0 0 0.0 Metagenome 3300038765 *Microbiome Permanent Draft Marine sediment microbial communities from Mesquite Bay, Texas, USA Marine sediment microbial communities from Mesquite Bay, Texas, USA - MB2D 6-9 cm Michigan State University 3300038765 Metagenome Analysis MegaHit v. 1.1.1 released by JGI data releasing policy No Yes acidophile@gmail.com Brett Baker No Environmental Aquatic Sediment Marine Unclassified marine sediment 28.147 -96.8455 300152705 328182 39 0 34 1 0.0 Metagenome 3300039168 *Microbiome Permanent Draft Organic and conventional farm associated microbial communities from Canada and USA Wastewater microbial communities from natural feedlot in Alberta, Canada - WW91 Colorado State University 3300039168 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 53.5 -112.06 123791852 236981 183 2 267 2 0.0 Metagenome 3300028325 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300028325 Metagenome Analysis spades v. 3.11.1 Yes Yes brune@mpi-marburg.mpg.de Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 26.0625 -80.2332 1389540873 1388452 64 6 66 9 SRX3315525, SRX3315524 Unrestricted 0.0 Metagenome 3300056999 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Activated sludge microbial communities from bioreactor in WWTP, Madison, WI, USA - RS_2021-10-05_SampleB (version 2) DOE Joint Genome Institute (JGI) 3300056999 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.03331 -89.35633 1427062574 1361367 425 44 426 47 Unrestricted 12.28 Metagenome 7000000484 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 764447348 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000484 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 123555670 170040 0 0 0 0 0.0 Metagenome 3300008253 *Microbiome Permanent Draft Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico and Hudson Canyon, USA Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1B Hudson Canyon DOE Joint Genome Institute (JGI) 3300008253 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mcredmond@uncc.edu Molly C. Redmond No Environmental Aquatic Cold seeps Marine Unclassified Methane seep mesocosm 39.55 -72.4 786099515 1703029 1162 14 1952 31 SRX2754393 Unrestricted 0.0 Metagenome 3300035438 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09May2015-rr0138 DOE Joint Genome Institute (JGI) 3300035438 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1256255505 2440893 463 120 678 231 SRX8203565 Unrestricted 11.0 Metagenome 3300044979 *Microbiome Permanent Draft Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA - PH 28 years plot 3 DOE Joint Genome Institute (JGI) 3300044979 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes luizdomeignoz@gmail.com Luiz Domeignoz Horta No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 42.303 -72.1228 1212090642 1998363 325 64 553 82 SRX15792993 Unrestricted 14.31 Metagenome 3300041015 *Microbiome Permanent Draft Freshwater bacterial community from groundwater monitoring well in Altingen, Germany Freshwater bacterial community from groundwater monitoring well in Altingen, Germany - NRFeOx_Alt1 CeGaT 3300041015 Metagenome Analysis SPAdes v. 3.13.1 released by JGI data releasing policy No Yes natalia.jakus@uni-tuebingen.de Natalia Jakus No Environmental Aquatic Groundwater Freshwater Contaminated Freshwater 48.5632 8.8998 89585184 113464 19 0 31 0 0.0 Metagenome 3300011201 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00514 Weill Cornell Medical College 3300011201 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.9 -73.85 29549579 44934 29 0 28 0 SRX822483 0.0 Metagenome 3300012843 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - HID1975K_E11 MG DOE Joint Genome Institute (JGI) 3300012843 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie Yes 29545786 Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 100244587 148350 99 0 130 0 SRX3564712 Unrestricted 0.0 Metagenome 3300025472 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_20_100 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025472 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 268418895 458121 123 1 192 1 SRX3005976 Unrestricted 0.0 Metagenome 3300049050 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - H22_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049050 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 343907410 758343 450 25 912 36 Unrestricted 0.0 Metagenome 3300004776 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA14M DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300004776 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tmcmahon@engr.wisc.edu, tmcmahon@engr.wisc.edu; shaomei.he@gmail.com Katherine McMahon, Katherine McMahon; Shaomei He No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 494806746 1354523 689 8 1237 18 SRX2565138 Unrestricted 0.0 Metagenome 3300022474 *Microbiome Permanent Draft Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain - individual 6 Autonomous University of Barcelona 3300022474 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.38 -0.51 3712523 5230 7 0 13 0 0.0 Metagenome 3300011921 *Microbiome Permanent Draft Mine pit pond microbial communities from Vermont, USA Mine pit pond microbial communities from Vermont, USA - 2M University of Vermont 3300011921 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 27896068 Environmental Aquatic Alkaline Non-marine Saline and Alkaline Mine pit pond Mine pit pond 43.727094 -72.425964 62431253 112509 45 4 62 5 SRX1063463 0.0 Metagenome 3300053104 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere DOE Joint Genome Institute (JGI) 3300053104 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.587823 -123.193444 707576056 1262606 321 106 520 171 Unrestricted 12.61 Metagenome 3300061112 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIIF8SW no PMA treatment Jet Propulsion Laboratory, California Institute of Technology 3300061112 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 5086780 5587 13 3 11 4 SRX3808530, SRX3244872, SRX3244865, SRX3808535 0.0 Metagenome 3300070833 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_051-M-20200708-COMP-DNA1 3300070833 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 17289444 54927 69 13 137 26 0.0 Metagenome 3300056867 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F1L_9_10 DOE Joint Genome Institute (JGI) 3300056867 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.95358208 -81.6734609 2082014299 3201072 792 5 1264 13 Unrestricted 12.94 Metagenome 3300041068 *Microbiome Permanent Draft Contaminated soil microbial communities from Humid Pampas, Chascomus Partido, Argentina Control soil microbial communities from Humid Pampas, Chascomus Partido, Argentina - L2_368 Illumina 3300041068 Metagenome Analysis Megahit v. 1.2.10 released by JGI data releasing policy No Yes valeria.imperato@uhasselt.be Valeria Imperato No Environmental Terrestrial Unclassified Soil Agricultural land Control soil -35.5787 -58.0138 28781635 60458 36 2 62 1 0.0 Metagenome 3300032270 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada - Lake 06-161 Genome Quebec 3300032270 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.191424 -77.646029 590895993 1257103 342 79 603 167 0.0 Metagenome 3300028238 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen10, Rep 2, Chloramphenicol (External Submission) DOE Joint Genome Institute (JGI) 3300028238 Metagenome Analysis No Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 211388518 321477 61 52 112 92 Unrestricted 0.0 Metagenome 3300000130 *Microbiome Draft Marine microbial communities from chronically polluted sediments in four geographic locations Marine microbial communities from chronically polluted sediments in Adventfjord, Norway - Svalbard Archipelago station 2 sample NOR 15_50m DOE Joint Genome Institute (JGI) 3300000130 Metagenome Analysis released based on JGI ITS Yes Yes hdionisi@cenpat.edu.ar Hebe Dionisi No Environmental Aquatic Intertidal zone Marine Sediment Marine 78.243786 15.656147 614482412 1475369 618 345 1072 349 Unrestricted 0.0 Metagenome 3300003756 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 DOE Joint Genome Institute (JGI) 3300003756 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 95754556 135733 67 0 86 0 SRX2770675 Unrestricted 0.0 Metagenome 3300013402 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100181 University of Pennsylvania 3300013402 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 2198253 6109 6 5 7 9 SRX756352 0.0 Metagenome 3300035517 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - Beaver5Rectum1 DOE Joint Genome Institute (JGI) 3300035517 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Rectum rectum 49.18 -122.54 1478132209 2247017 409 28 692 46 SRX8346447 Unrestricted 6.0 Metagenome 3300013944 *Microbiome Permanent Draft Fecal viral communites from wild urban brown rats in Berlin, Germany Fecal viral communites from wild urban brown rats in Berlin, Germany - KS/11/0578 Freie University Berlin 3300013944 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 52.529611 13.401343 1039203 2651 0 0 0 0 SRX616502 0.0 Metagenome 3300012006 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier in Georgia, USA Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B Georgia Institute of Technology 3300012006 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater 34.21 -83.96 386353595 790262 123 4 195 6 SRX332015 0.0 Metagenome 3300029129 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019855-113 Beijing Genomics Institute (BGI) 3300029129 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 145927887 181099 128 0 210 0 0.0 Metagenome 3300009660 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-058 DOE Joint Genome Institute (JGI) 3300009660 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Permafrost soil 68.6137 -149.3144 572059289 1211903 419 1 631 1 SRX2755584 Unrestricted 0.0 Metagenome 3300039447 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 DOE Joint Genome Institute (JGI) 3300039447 Metagenome Analysis MEGAHIT v. 1.2.7 Released on PI's request No Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Host-associated Plants Rhizosphere Roots Unclassified rhizosphere -19.2822 -43.5936 1326075150 2152607 753 66 1347 103 SRX4020303 0.0 Metagenome 3300007922 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 764447348 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007922 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 14957100 28216 16 3 22 5 SRX024119 0.0 Metagenome 3300001917 *Microbiome Permanent Draft Contaminated subsurface sediment microbial communities from Dusseldorf, Germany, analyzing toluene degradation Contaminated subsurface sediment microbial communities from Dusseldorf, Germany, analyzing toluene degradation - Fos_Dus_2 3300001917 Metagenome Analysis de novo assembly algorithm of CLC Genomics Workbench released by JGI data releasing policy No Yes emnabouhajja@gmail.com Emna Bouhajja No Environmental Terrestrial Sediment Geologic Unclassified Contaminated subsurface sediment 51.21 6.46 33517 40 0 0 0 0 0.0 Metagenome 3300056889 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E1P_60_62 DOE Joint Genome Institute (JGI) 3300056889 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.996961 -81.487381 1502120595 2202074 822 0 1292 0 Unrestricted 16.0 Metagenome 3300001346 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic Microbial community sample from North Sea - COGITO 998_met_01 DOE Joint Genome Institute (JGI) 3300001346 Metagenome Analysis Yes Yes hteeling@mpi-bremen.de, hteeling@mpi-bremen.de; agrieb@mpi-bremen.de Hanno Teeling, Hanno Teeling; Anissa Grieb No Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Pelagic marine 54.184167 7.9 537207399 1089270 398 123 635 164 SRX803008 Unrestricted 0.0 Metagenome 3300038558 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Sediment microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_North_3 DOE Joint Genome Institute (JGI) 3300038558 Metagenome Analysis metaspades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Wetlands Marine Sediment sediment 26.6774 -80.3753 1761820812 2839923 877 11 1432 9 SRX9406125 Unrestricted 13.39 Metagenome 3300027455 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G06K3-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300027455 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 24196465 79824 88 6 157 2 SRX1991310 Unrestricted 0.0 Metagenome 3300033825 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 E1 1-5 DOE Joint Genome Institute (JGI) 3300033825 Metagenome Analysis spades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0467 188040273 500671 248 4 458 6 SRX8138223, SRX8138222 Unrestricted 0.0 Metagenome 3300001658 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF048 DOE Joint Genome Institute (JGI) 3300001658 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 4088584 12561 29 3 64 6 SRX2014386 Unrestricted 0.0 Metagenome 3300003107 *Microbiome Permanent Draft Continuous culture Bioreactor microbial community with low C:N ratio inoculated with sediment from German Wadden Sea Continuous culture Bioreactor microbial community with low C:N ratio inoculated with sediment from Wadden Sea, Germany - sample 1, day 6 3300003107 Metagenome Analysis MetaVelvet v. 0.3 Made public because these are downloaded from Genbank No Yes mstrous@mpi-bremen.de Marc Strous No Engineered Bioreactor Marine sediment inoculum Continuous culture Unclassified Continuous culture Bioreactor 53.27344 5.347795 9687199 14152 18 0 37 0 0.0 Metagenome 3300053080 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere DOE Joint Genome Institute (JGI) 3300053080 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121171 -123.269419 746982650 1496158 160 63 212 92 Unrestricted 14.88 Metagenome 3300013323 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100405 University of Pennsylvania 3300013323 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12559659 14472 8 2 9 5 SRX756252 0.0 Metagenome 3300038319 *Microbiome Permanent Draft Peat microbial communities from Marcell Experimental Forest bog in Minnesota, USA Peat microbial communities from Marcell Experimental Forest bog in Minnesota, USA - MG_T3M_75cm Georgia Institute of Technology 3300038319 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog Peat 47.506 -93.454 133273734 209003 50 0 89 0 SRX2730435 0.0 Metagenome 3300006864 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193 DOE Joint Genome Institute (JGI) 3300006864 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Permafrost Soil 68.6135 -149.3144 497106152 1009392 357 9 607 14 SRX2739469 Unrestricted 0.0 Metagenome 3300069228 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_043-O-20210803-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069228 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tundra Soil Unclassified Terrestrial soil 68.665514 -149.375519 3471645120 7803917 1407 231 2732 365 0.0 Metagenome 2010549000 *Microbiome Draft Rice endophytes microbial communities from the International Rice Research Institute, Philippines Rice roots microbial communities from plants at IRRI, Los Banos, Philippines - endophytes DOE Joint Genome Institute (JGI) 2010549000 Metagenome Analysis lucy / pga No Yes angela.sessitsch@ait.ac.at Sessitsch, Angela Yes 21970692 Host-associated Plants Endosphere Roots Unclassified Rice roots 14.1677 121.2523 46747680 64541 114 34 37 0 Unrestricted 0.0 Metagenome 3300046738 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 soil DOE Joint Genome Institute (JGI) 3300046738 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.588222 -123.193963 6.62 543493198 987772 257 17 533 25 Unrestricted 18.7 Metagenome 3300056602 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.5C.7 SIP fraction DOE Joint Genome Institute (JGI) 3300056602 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 140305696 276680 104 6 203 14 Unrestricted 14.75 Metagenome 3300009713 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC107_MetaG DOE Joint Genome Institute (JGI) 3300009713 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 22.28 114.17 611335453 1205356 585 4 958 8 SRX2338864 Unrestricted 0.0 Metagenome 3300042078 *Microbiome Permanent Draft Mollusc gills microbial communities from various hydrothermal vent in Atlantic Ocean Mollusc gills microbial communities from Clueless hydrothermal vent, Atlantic Ocean - BspSym_Cl_3_11-4 Max Planck Institute for Marine Microbiology 3300042078 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills -4.803266 -12.3718 365154113 401337 4 4 6 5 ERX3367183 0.0 Metagenome 3300031260 *Microbiome Finished Hydraulic fracturing wastewater bacterial and archaeal communities from a shale gas play in Sichuan Basin, China Hydraulic fracturing wastewater microbial communities from a shale gas play in Sichuan Basin, China - A1 Beijing Novogene Bioinformatics Technology Co., Ltd 3300031260 Metagenome Analysis megahit v. 1.1.3 released by JGI data releasing policy Yes Yes czhong@ualberta.ca; alessi@ualberta.ca Cheng Zhong; Daniel S. Alessi No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Industrial wastewater 29.22 104.16 136237194 201139 136 0 223 2 0.0 Metagenome 3300022769 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA5 Version 2 University of New South Wales 3300022769 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 45803654 63856 31 1 34 3 0.0 Metagenome 3300032329 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 17-086 Genome Quebec 3300032329 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.891721 -70.359574 569858580 1227929 453 50 803 119 0.0 Metagenome 3300040479 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_018-M-20140618-COMP-DNA1 Argonne National Laboratory 3300040479 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 3997093 12084 23 3 66 3 ERX2134059 0.0 Metagenome 3300039258 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P13_D8 DOE Joint Genome Institute (JGI) 3300039258 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 286088226 407628 102 0 131 0 SRX9635097, SRX9635096 Unrestricted 0.0 Metagenome 3300037706 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVT2_Sep_56_v DOE Joint Genome Institute (JGI) 3300037706 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 1788109232 2983683 644 10 1101 17 SRX9163012 Unrestricted 15.21 Metagenome 3300033181 *Microbiome Permanent Draft Rock endolithic microbial communities from Victoria Land, Antarctica Rock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace sud DOE Joint Genome Institute (JGI) 3300033181 Metagenome Analysis spades v. 3.13.0 Yes Yes selbmann@unitus.it Laura Selbmann Yes 32139564 Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock -77.6 161.2 1216294439 1964487 326 56 438 73 SRX7111724 Unrestricted 37.45 Metagenome 3300007614 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_D1_MG DOE Joint Genome Institute (JGI) 3300007614 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Terrestrial Wetlands Soil Unclassified Soil 37.4962 -122.1329 581475011 1189001 573 3 951 14 SRX2523670 Unrestricted 0.0 Metagenome 3300046457 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere DOE Joint Genome Institute (JGI) 3300046457 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5876 -123.1933 460223827 775840 225 23 405 39 Unrestricted 20.84 Metagenome 3300040541 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_016-M-20170829-COMP-DNA1 Battelle Memorial Institute 3300040541 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 2704050 8442 17 0 31 3 0.0 Metagenome 3300031451 *Microbiome Permanent Draft Rock endolithic microbial communities from Victoria Land, Antarctica Rock endolithic microbial communities from Victoria Land, Antarctica - Siegfried Peak nord DOE Joint Genome Institute (JGI) 3300031451 Metagenome Analysis spades v. 3.12.0 Yes Yes selbmann@unitus.it Laura Selbmann Yes 32139564 Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock -77.57 161.8 625260004 960855 108 22 124 34 SRX5225148 Unrestricted 60.3 Metagenome 3300042597 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Cylindrotermes parvignathus from Petit Saut, French Guiana, France - Cyl330 Eurofins MWG Operon 3300042597 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 5.071383 -53.039049 770868766 857208 98 6 143 8 0.0 Metagenome 2088090015 *Microbiome Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil v2 (version 2) DOE Joint Genome Institute (JGI) 2088090015 Metagenome Analysis Artifact filter, partition at k=32, assemble with Velvet at k19-45, Minimus2 released based on JGI ITS No Yes janet.jansson@pnnl.gov Janet Jansson Yes 30158906 Environmental Terrestrial Unclassified Soil Grasslands Soil 39.0042816 -77.1012173 244906069 353311 54 1 85 0 Unrestricted 0.0 Metagenome 3300022787 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY2 Version 2 University of New South Wales 3300022787 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 9630086 17430 5 0 17 0 0.0 Metagenome 3300003273 *Microbiome Permanent Draft Whitefly associated endosymbiont microbial communities from Neve Yaar, Israel Whitefly Bemisia tabaci associated secondary symbiont microbial communities from Neve Yaar, Israel - sample Cardinium_whitefly 3300003273 Metagenome Analysis released by JGI data releasing policy No Yes itaiopa6@gmail.com Itai Opatovsky No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Whitefly Bemisia tabaci associated 32.708101 35.179264 350928 331 1 0 1 0 0.0 Metagenome 7000000001 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 809635352 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000001 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 107994260 196393 0 0 0 0 0.0 Metagenome 3300036960 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - SCT 21 II DOE Joint Genome Institute (JGI) 3300036960 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 1016077486 2105570 948 180 1417 295 SRX8361238 Unrestricted 9.48 Metagenome 3300005096 *Microbiome Permanent Draft Hydrothermal chimney in EPR Hydrothermal chimney microbial communities from the East Pacific Rise - M vent 7 Beijing Genomics Institute (BGI) 3300005096 Metagenome Analysis IDBA-UD v. 1.1.1 released per JGI data release policy No Yes heying1982@sjtu.edu.cn Ying HE No Environmental Aquatic Unclassified Marine Unclassified marine 592184781 595139 188 1 177 1 0.0 Metagenome 3300045679 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Cordillera ecozone, Canada - Lake 13-514 Genome Quebec 3300045679 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 58.21637 -129.837323 1100766039 2338703 461 158 731 278 0.0 Metagenome 3300029538 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P021V6 Beijing Genomics Institute (BGI) 3300029538 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 151197425 178069 120 0 174 0 0.0 Metagenome 3300049611 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MC8 DOE Joint Genome Institute (JGI) 3300049611 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 8570250 22002 51 1 96 2 Unrestricted 22.51 Metagenome 3300003494 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_150m_DNA DOE Joint Genome Institute (JGI) 3300003494 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 168081602 332811 128 12 245 21 Unrestricted 0.0 Metagenome 3300049476 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from New Hartford, Connecticut, USA - farmington_2019_sed_WHONDRS-S19S_0053 DOE Joint Genome Institute (JGI) 3300049476 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 41.869567 -73.00222222 168556266 422490 545 13 1057 28 Unrestricted 14.79 Metagenome 3300034272 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156 DOE Joint Genome Institute (JGI) 3300034272 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1696202923 3351838 767 186 1164 307 SRX7622339 Unrestricted 11.11 Metagenome 3300059726 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - High salinity metaG S.579 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059726 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 101761801 247421 167 76 281 121 SRX2753577 Unrestricted 0.0 Metagenome 3300050235 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Butler, South Dakota, USA - 92_891_SD_DR_1m_c2_T1_16O DOE Joint Genome Institute (JGI) 3300050235 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 45.27223 -97.8369 1412300591 2059193 441 15 626 19 Restricted 16.47 Metagenome 3300004253 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 94_HOW11 DOE Joint Genome Institute (JGI) 3300004253 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 99798297 202448 48 0 92 0 SRX2721169 Unrestricted 0.0 Metagenome 3300026022 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_201 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026022 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 67408568 183672 138 2 256 3 SRX2564567, SRX2581033 Unrestricted 0.0 Metagenome 3300027844 *Microbiome Permanent Draft Marine microbial communities from western Arctic Ocean Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027844 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh Yes 30271971 Environmental Aquatic Oceanic Marine Unclassified Marine 75.2588 -156.0227 1473068934 2851695 750 109 1113 190 SRX2997166 Unrestricted 0.0 Metagenome 3300000838 *Microbiome Draft Passalidae beetle gut microbial communities from Costa Rica Passalidae beetle gut microbial communities from Costa Rica -Larvae (5ML+5BL) v2 (version 2) DOE Joint Genome Institute (JGI) 3300000838 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes davidhs@lsi.umich.edu, davidhs@umich.edu David Sherman No Host-associated Arthropoda: Insects Gut Larva Unclassified Passalidae beetle gut 10.207151 -84.007673 77567223 206349 219 11 434 18 Unrestricted 0.0 Metagenome 3300037157 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 P2 20-24 DOE Joint Genome Institute (JGI) 3300037157 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0473 834827233 1669791 304 23 501 35 SRX8144918 Unrestricted 8.56 Metagenome 3300024325 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK19 DOE Joint Genome Institute (JGI) 3300024325 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 217695683 559932 306 21 477 21 SRX4547522 Unrestricted 8.5 Metagenome 3300029145 *Microbiome Permanent Draft Aquariaum water viral communities from Chicago, USA Aquariaum water viral communities from Chicago, USA - Stingray Touch - STA1 Michigan State University 3300029145 Metagenome Analysis released Yes Yes No Environmental Aquatic Unclassified Aquaculture Unclassified Aquarium water 41.87 -87.61 7373646 16509 23 0 70 0 0.0 Metagenome 3300028748 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2 DOE Joint Genome Institute (JGI) 3300028748 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 1061108328 2151518 407 35 598 54 SRX5355608 Unrestricted 0.0 Metagenome 3300026651 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A4-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300026651 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 4626932 14416 49 2 93 1 SRX1991143 Unrestricted 0.0 Metagenome 3300061120 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIIF1SW no PMA treatment Jet Propulsion Laboratory, California Institute of Technology 3300061120 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 5281438 5855 4 2 7 3 SRX3244867, SRX3808505, SRX3244858, SRX3808512 0.0 Metagenome 2084038008 *Microbiome Permanent Draft Xyleborus affinis microbial communities from Bern, Switzerland Xyleborus affinis microbial communities from Bern, Switzerland - gallery community DOE Joint Genome Institute (JGI) 2084038008 Metagenome Analysis Newbler No Yes gsuen@wisc.edu Garret Suen Yes 25406380 Environmental Terrestrial Insects nest Nest Nest dump Xyleborus affinis 46.916667 7.516667 146840147 364117 140 13 177 0 0.0 Metagenome 3300003625 *Microbiome Permanent Draft Hypersaline viral and bacterial communities from Bras del Port, Santa Pola, Spain Hypersaline viral communities from Bras del Port, Santa Pola, Spain - CR30 Febrero14 Julio precorrection Lifesequencing S.L. 3300003625 Metagenome Analysis released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline samples 38.192206 -0.591865 1189112 3448 12 0 0 0 0.0 Metagenome 3300009553 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG DOE Joint Genome Institute (JGI) 3300009553 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 4613787483 9379336 2725 255 4384 412 SRX3203370 Unrestricted 0.0 Metagenome 3300031858 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2 DOE Joint Genome Institute (JGI) 3300031858 Metagenome Analysis spades v. 3.13.0 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Bulk soil soil 39.6475 -79.9369 2503797881 6199898 1551 31 2880 57 SRX5809462 Unrestricted 7.34 Metagenome 3300046339 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_112 DOE Joint Genome Institute (JGI) 3300046339 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9236 -106.9499 300718539 1006678 1602 27 3441 20 Restricted 0.0 Metagenome 3300024238 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T50 DOE Joint Genome Institute (JGI) 3300024238 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 323124358 651570 283 1 499 2 SRX4415307, SRX7705662 Unrestricted 0.0 Metagenome 3300022315 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1BM2 JM2 AGRF 3300022315 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 38401161 72043 19 0 40 1 0.0 Metagenome 3300002483 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - ETNP_6_30 DOE Joint Genome Institute (JGI) 3300002483 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 18.92 -104.89 255384029 631329 0 1 2 1 SRX2557419 Unrestricted 0.0 Metagenome 3300050328 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_96 DOE Joint Genome Institute (JGI) 3300050328 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -76.91 160.935 257156839 393971 39 22 60 44 SRX18235946 Restricted 42.28 Metagenome 3300039860 *Microbiome Permanent Draft Glacier soil microbial communities from Mackay Glacier, Antarctica Glacier soil microbial communities from Mackay Glacier, Antarctica - MS2-2 University of Pretoria 3300039860 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Terrestrial Glacier Soil Unclassified Glacier soil -77.01 161.765 24228003 49913 24 1 33 0 0.0 Metagenome 3300033097 *Microbiome Permanent Draft Mercury Periphyton Project Periphyton microbial communities from the St. Maurice River, Quebec, Canada - S3.E1 Genome Quebec 3300033097 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Periphyton Freshwater periphyton 47.899882 -73.808857 309748739 745582 344 112 758 193 0.0 Metagenome 3300044300 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T52 D DOE Joint Genome Institute (JGI) 3300044300 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7356 -64.2741 350585850 872680 17 0 26 1 Unrestricted 40.36 Metagenome 3300000431 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 DOE Joint Genome Institute (JGI) 3300000431 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 701771 2135 47 5 85 7 SRX1985410, SRX2021669, SRX1985409 0.0 Metagenome 3300017919 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in Ohio, USA - hydraulic fracturing test GB_TM_B DOE Joint Genome Institute (JGI) 3300017919 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 29941576 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Fracking water 40.178 -81.073 29469814 63678 852 0 1628 1 SRX3937637 Unrestricted 472.24 Metagenome 3300028349 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF 2006 #1 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028349 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5627 78.1882 63926073 108032 18 1 26 3 SRX3242178 Unrestricted 0.0 Metagenome 3300011195 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 4 - S13.1.30.a - transect 1, age 5 years, surface depth) University of Bristol 3300011195 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes EAEloeFadrosh@lbl.gov; maisie.nash@bristol.ac.uk; ama@envs.au.dk Emiley Eloe-Fadrosh; Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 79.11833333 12.09361111 7.5 6405001 20870 32 8 84 9 0.0 Metagenome 3300025547 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_150m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025547 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 299900459 576154 214 20 320 31 Unrestricted 0.0 Metagenome 3300045733 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Microbial mat bacterial communities from riparian zone, North Slope, Alaska, United States - OKS_BSeep2C_28June2019 DOE Joint Genome Institute (JGI) 3300045733 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes demerson@bigelow.org David Emerson No Environmental Terrestrial Unclassified Soil Riparian soil riparian zone microbial mat 68.6721 -149.1359 711659518 1254976 691 207 1138 288 Unrestricted 29.11 Metagenome 3300029417 *Microbiome Permanent Draft Human fecal microbial communities from healthy and liver cirrhosis patients in Hangzhou, China Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-84_Run4 Zhejiang University 3300029417 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 30.0 120.0 190140717 242925 126 0 202 0 0.0 Metagenome 2236876025 *Microbiome Draft Switchgrass-associated bovine rumen microbial communities from Urbana, Illinois, USA Switchgrass-associated rumen community WFO DOE Joint Genome Institute (JGI) 2236876025 Metagenome Analysis velvet released based on JGI ITS No Yes emrubin@lbl.gov Eddy Rubin Yes 21273488 Host-associated Mammals Stomach Digestive system Rumen Switchgrass-associated bovine rumen 40.1 -88.26 342670654 545284 1348 8 2565 42 Unrestricted 0.0 Metagenome 3300007910 *Microbiome Permanent Draft Anaerobic oil degrading microbial communities from River Tyne estuarine sediment Microbial communities from sediment of the River Tyne Estuary, UK - Pasteurized_686d_3 University of Liverpool 3300007910 Metagenome Analysis IDBA-DB released per JGI data release policy No Yes ana.suarez-suarez@ncl.ac.uk, ian.head@ncl.ac.uk; ana.suarez-suarez@ncl.ac.uk Ana Su?rez-Su?rez, Ian Head; Ana Suarez-Suarez No Environmental Aquatic Unclassified Sediment Unclassified sediment 54.9632021 -1.6348029 146326664 274402 119 1 220 0 0.0 Metagenome 7000000246 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit number 3 of subject 159227541 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000246 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 126664595 190938 0 0 0 0 0.0 Metagenome 3300038651 *Microbiome Permanent Draft Activated sludge microbial communities from anaerobic digester at WWTP from various locations in Denmark Activated sludge microbial communities from anaerobic digester at WWTP in Viborg, Denmark - SA-RHK-529 Aalborg University 3300038651 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified Activated sludge 56.425573 9.455083 217213006 395396 246 0 432 0 0.0 Metagenome 3300025044 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-50 (SPAdes) DOE Joint Genome Institute (JGI) 3300025044 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 49.9998 -145.0 146500045 254436 99 0 124 1 Unrestricted 0.0 Metagenome 3300069597 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Soaproot Saddle, Pacific Southwest, CA, USA - SOAP_031-M-20180531-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069597 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.03337 -119.26219 13992522 44519 104 12 150 17 0.0 Metagenome 3300028664 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_1 DOE Joint Genome Institute (JGI) 3300028664 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 621716625 1557884 645 143 989 196 SRX5281181 Unrestricted 0.0 Metagenome 3300024433 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300024433 Metagenome Analysis spades v. 3.11.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Oceanic Marine Sediment Deep subsurface 44.288 34.983 1069783919 2170781 532 41 822 73 SRX7699232 Unrestricted 0.0 Metagenome 3300032020 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_18 DOE Joint Genome Institute (JGI) 3300032020 Metagenome Analysis spades v. 3.12.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5367 -110.4246 1392320744 2850151 1075 2 1802 11 SRX6412741 Unrestricted 18.32 Metagenome 3300002288 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP16-I3 3300002288 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300025964 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLC_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025964 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.224518 -122.019257 86980674 192014 154 2 256 2 SRX7143103 Unrestricted 0.0 Metagenome 3300050202 *Microbiome Permanent Draft Plant-associated microbial communities from Atacama desert, Huara, Chile Cyanobacteria-associated microbial communities from Atacama desert, Putre, Chile - Nostoc University of Wisconsin, Madison 3300050202 Metagenome Analysis Custom JGI assembly. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Microbial Unclassified Bacteria Unclassified Cyanobacteria-associated -18.197 -69.5597 260361459 481329 96 7 172 11 SRX6486518 0.0 Metagenome 3300007896 *Microbiome Permanent Draft Anaerobic oil degrading microbial communities from River Tyne estuarine sediment Microbial communities from sediment of the River Tyne Estuary, UK - Live_176d_3 University of Liverpool 3300007896 Metagenome Analysis IDBA-DB released per JGI data release policy No Yes ana.suarez-suarez@ncl.ac.uk Ana Su?rez-Su?rez, Ana Suarez-Suarez No Environmental Aquatic Unclassified Sediment Unclassified sediment 54.9632021 -1.6348029 195236773 400380 100 2 170 4 0.0 Metagenome 3300059761 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1547B-02 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059761 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2314 -123.8828 213723806 445949 146 9 242 12 SRX2753628 Unrestricted 0.0 Metagenome 3300001551 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from Lau Basin, Pacific Ocean Hydrothermal vent plume microbial communities from Lau Basin, Pacific Ocean - Lau MG2b 3300001551 Metagenome Analysis Velvet, MetaVelvet, Minimus released by JGI data releasing policy No Yes menli@umich.edu Meng Li No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 20.32 176.8 1101951 1758 3 0 7 0 0.0 Metagenome 3300043175 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from Nevada, United States - Crystal Pool (CP_S2) (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043175 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified Desert spring 36.4202 -116.323 7.4 834828205 1188665 322 3 516 3 SRX9167301 Unrestricted 57.66 Metagenome 3300012976 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG DOE Joint Genome Institute (JGI) 3300012976 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 971421026 2232233 606 16 1131 33 SRX3205032, SRX3205031 Unrestricted 0.72 Metagenome 3300056635 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.18W.16 SIP fraction DOE Joint Genome Institute (JGI) 3300056635 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 93166818 182034 78 17 136 37 Unrestricted 10.09 Metagenome 3300003871 *Microbiome Permanent Draft Plastic marine debris microbial communities from the Atlantic Ocean Plastic marine debris microbial communities from the Atlantic Ocean - SEA_0136_20120610_metagen Marine Biological Laboratory 3300003871 Metagenome Analysis CLC workbench 7 released per JGI data release policy No Yes amaral@mbl.edu Linda Amaral-Zettler No Environmental Aquatic Oceanic Marine Unclassified marine 39.14333 -67.825 67667520 118485 31 11 42 14 0.0 Metagenome 3300043083 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver small intestine microbial communities from Maple Ridge, British Columbia, Canada - Beaver3Small.Intestine1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043083 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Small intestine Digestive system Unclassified small intestine 49.18 -122.54 323930954 526835 14 6 30 7 SRX8345808 Unrestricted 14.3 Metagenome 3300070953 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Alaska, USA - HEAL_046-O-20170725-COMP-DNA1 3300070953 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 60190696 177209 112 22 210 34 0.0 Metagenome 3300023505 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_151B University of California, Irvine 3300023505 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 116362771 116178 9 0 16 0 0.0 Metagenome 7000000590 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human left retroauricular crease microbial communities from NIH, USA - visit 2, subject 764083206 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000590 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 24674022 39214 0 0 0 0 SRX024958, SRX098535 0.0 Metagenome 3300027599 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius ilvae ELBA.2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027599 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 627783760 790948 7 1 9 1 SRX2711686 Unrestricted 0.0 Metagenome 3300027301 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepB_8d DOE Joint Genome Institute (JGI) 3300027301 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 154749926 265702 84 10 120 11 SRX5245288 Unrestricted 21.32 Metagenome 3300048772 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 S1 40-44 DOE Joint Genome Institute (JGI) 3300048772 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.0474 297775055 387571 78 0 110 0 Restricted 35.24 Metagenome 3300070741 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_040-O-20180730-COMP-DNA1 3300070741 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 41544228 123895 152 45 289 67 0.0 Metagenome 2199352009 *Microbiome Permanent Draft Marine sediment microbial communities from the Peru Margin, Gulf of Mexico and South Pacific Gyre Marine subseafloor sediment microbial communities, sample from White Oak River Estuary, NC, USA 14E DOE Joint Genome Institute (JGI) 2199352009 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS No Yes jfbiddle@udel.edu Jennifer Biddle No Environmental Aquatic Intertidal zone Marine Sediment Marine sediment 34.690251 -77.106571 22398301 51820 5 0 10 0 Unrestricted 0.0 Metagenome 3300045257 *Microbiome Permanent Draft Forest soil microbial communities from boreal-temperate forests in Minnesota, USA Forest soil microbial communities from Hubachek Wilderness Research Center, Ely, Minnesota, USA - Ely AMB CO K4 DOE Joint Genome Institute (JGI) 3300045257 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pankaj.trivedi@colostate.edu Pankaj Trivedi No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 47.55 -92.3 1073161591 1771930 311 12 521 22 Unrestricted 16.06 Metagenome 3300007745 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 159490532 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007745 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 9450341 15973 16 2 19 8 SRX024526, SRX024525 0.0 Metagenome 3300042770 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N2_30_40 NMDC pilot DOE Joint Genome Institute (JGI) 3300042770 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380273 -119.2723038 35573088 106017 169 11 339 16 SRX2523175 0.0 Metagenome 3300007986 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-04 DOE Joint Genome Institute (JGI) 3300007986 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 1067773198 1851003 1007 46 1619 68 SRX3197880 Unrestricted 0.0 Metagenome 3300020460 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_A100001037 (ERX555931-ERR599097) CEA Genoscope 3300020460 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 23.4217 37.2517 1187368180 2976167 671 37 1185 87 0.0 Metagenome 3300039453 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 DOE Joint Genome Institute (JGI) 3300039453 Metagenome Analysis MEGAHIT v. 1.2.7 Released on PI's request No Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Host-associated Plants Rhizosphere Roots Unclassified rhizosphere -19.2822 -43.5936 1109386096 1993072 1159 71 2353 115 SRX4020304 0.0 Metagenome 3300020251 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555940-ERR599040) CEA Genoscope 3300020251 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -21.0675 -35.3923 100359105 267734 189 35 312 63 0.0 Metagenome 3300009472 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404 DOE Joint Genome Institute (JGI) 3300009472 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 27054497, 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 720808417 1380630 528 85 964 144 SRX2999666 Unrestricted 0.0 Metagenome 3300055375 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.18C.11 SIP fraction DOE Joint Genome Institute (JGI) 3300055375 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 98003179 203725 105 52 208 60 Unrestricted 10.98 Metagenome 3300001711 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-24 DOE Joint Genome Institute (JGI) 3300001711 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 49.5668 -138.6659 52091754 68594 1 0 2 0 Unrestricted 0.0 Metagenome 3300045092 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_4_B DOE Joint Genome Institute (JGI) 3300045092 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 124643786 144708 72 1 92 1 Unrestricted 109.03 Metagenome 3300017712 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM15.S.N DOE Joint Genome Institute (JGI) 3300017712 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1881 -86.344 15244737 29699 7 22 10 23 SRX7205048 Unrestricted 660.53 Metagenome 3300028960 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 53_4M Beijing Genomics Institute (BGI) 3300028960 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 57354719 64836 34 0 53 0 ERX491184 0.0 Metagenome 3300011727 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00549 Weill Cornell Medical College 3300011727 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.65 -73.89 37555027 51872 10 0 18 0 SRX822516 0.0 Metagenome 3300004458 *Microbiome Permanent Draft Anaerobic digester microbial communities from Pune, India Anaerobic digester healthy Agharkar Research Institute 3300004458 Metagenome Analysis Newbler v. 2.3 released per JGI data release policy No Yes pore.soham@gmail.com Soham Pore No Engineered Wastewater Unclassified Anaerobic digestor Unclassified Anaerobic digester 18.5 73.8 0 0 0 0 0 0 0.0 Metagenome 3300047388 *Microbiome Permanent Draft Forest soil microbial communities from boreal-temperate forests in Minnesota, USA Forest soil microbial communities from Cloquet Forestry Center, Minnesota, USA - Cloquet DRY WO E1 (version 2) DOE Joint Genome Institute (JGI) 3300047388 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pankaj.trivedi@colostate.edu Pankaj Trivedi No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 46.31 -92.3 1768750993 2949391 471 16 834 34 Unrestricted 0.0 Metagenome 3300012857 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched mosquito-associated microbial communities from UW Madison campus, WI, USA - HID1973K_E0 MG DOE Joint Genome Institute (JGI) 3300012857 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 117206625 196527 100 0 136 0 SRX3564460 Unrestricted 0.0 Metagenome 3300043520 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime ecozone, Canada - Lake 07-241 Genome Quebec 3300043520 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.655567 -63.469954 942229425 2023947 383 139 644 240 0.0 Metagenome 3300020182 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2 DOE Joint Genome Institute (JGI) 3300020182 Metagenome Analysis spades v. 3.10.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling No Environmental Aquatic Epipelagic Marine Unclassified seawater 54.1841 7.9 969901026 1706198 543 143 771 217 SRX3989336 Unrestricted 35.95 Metagenome 3300003478 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA DOE Joint Genome Institute (JGI) 3300003478 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 236788318 505595 209 26 335 32 Unrestricted 0.0 Metagenome 3300028040 *Microbiome Permanent Draft Soil microbial communities from hillslopes of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-1-W_N DOE Joint Genome Institute (JGI) 3300028040 Metagenome Analysis spades v. 3.11.1 Yes Yes laurameredith@email.arizona.edu Laura Meredith No Engineered Artificial ecosystem Soil Mesocosm Unclassified soil 32.5789 -110.8512 144300550 329891 99 3 184 0 SRX5245796 Unrestricted 88.89 Metagenome 3300025660 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI072_LV_200m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025660 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 461416698 828680 326 1 494 3 Unrestricted 0.0 Metagenome 3300056644 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.17C.16 SIP fraction DOE Joint Genome Institute (JGI) 3300056644 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 190265416 302846 85 29 136 39 Unrestricted 10.51 Metagenome 3300026531 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in the Atlantic and Pacific Ocean Hydrothermal vent microbial communities from East Pacific Rise, Pacific Ocean - PIR-30 DOE Joint Genome Institute (JGI) 3300026531 Metagenome Analysis spades v. 3.11.1 Yes Yes pgirguis@oeb.harvard.edu Peter Girguis No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent 9.775 -104.2801 565819585 1094647 605 13 804 20 SRX4801600 Unrestricted 21.43 Metagenome 3300011575 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00551 Weill Cornell Medical College 3300011575 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.64 -73.9 27944027 36911 19 0 32 0 SRX822518 0.0 Metagenome 3300009633 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_17_10 DOE Joint Genome Institute (JGI) 3300009633 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 392602533 681324 212 62 382 100 SRX3006626 Unrestricted 0.0 Metagenome 3300026817 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 17 (SPAdes) DOE Joint Genome Institute (JGI) 3300026817 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 42257291 100766 46 0 103 0 SRX4339340 Unrestricted 0.0 Metagenome 3300002893 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA PDIso3.OB1V3 McGill University 3300002893 Metagenome Analysis SPAdes3.1.0 released per JGI data release policy No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey No Environmental Terrestrial Peat Soil Fen Hydrocarbon resource environments 51.166666 -116.15 3.3 6644799 9291 5 1 8 2 0.0 Metagenome 3300005551 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF89A DOE Joint Genome Institute (JGI) 3300005551 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 710294230 2159066 491 199 955 346 SRX2782312 Unrestricted 0.0 Metagenome 3300040979 *Microbiome Permanent Draft Terrestrial microbial communites from a soil warming plot in Okalahoma, USA Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C5 Georgia Institute of Technology 3300040979 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial 34.975667 -97.519 52342472 145885 90 9 198 13 SRX352030 0.0 Metagenome 3300021964 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D DOE Joint Genome Institute (JGI) 3300021964 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Unclassified Marine Unclassified Estuarine water 37.495 -122.0933 1600823230 3284023 692 204 990 283 SRX4053110 Unrestricted 18.24 Metagenome 3300031951 *Microbiome Permanent Draft Freshwater fungal communities from various locations Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120 DOE Joint Genome Institute (JGI) 3300031951 Metagenome Analysis spades v. 3.12.0 Yes Yes tyjames@umich.edu Timothy Y. James No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.6898 -83.2813 2981203599 6173915 1068 187 1578 340 SRX6420481 Unrestricted 21.81 Metagenome 3300007734 *Microbiome Finished Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan Chunlab, Inc 3300007734 Metagenome Analysis SPades version 3.1.1 released per JGI data release policy No Yes chojc@inha.edu, chojc@inha.edu; krmoon518@gmail.com Jang Cheon Cho, Jang Cheon Cho; Kira Moon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 37.953056 127.81721 22031041 32914 0 0 0 0 0.0 Metagenome 3300046665 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere DOE Joint Genome Institute (JGI) 3300046665 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5881 -123.1926 830807505 1276751 315 119 537 156 Unrestricted 24.82 Metagenome 3300011396 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Florida, USA - TSFL044 MetaG DOE Joint Genome Institute (JGI) 3300011396 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 28.5713 -82.2846 165850587 280512 98 73 137 148 SRX3539483 Unrestricted 0.0 Metagenome 3300025035 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025035 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 700556579 1229195 608 24 939 42 SRX3197864 Unrestricted 0.0 Metagenome 3300003372 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 DOE Joint Genome Institute (JGI) 3300003372 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 51.62 -128.09 54813825 155080 218 72 400 121 SRX2575203 Unrestricted 0.0 Metagenome 3300049731 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P15SSC1_191107_i DOE Joint Genome Institute (JGI) 3300049731 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 794991204 1277097 304 5 486 6 SRX20650725 Unrestricted 0.0 Metagenome 3300003994 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2 DOE Joint Genome Institute (JGI) 3300003994 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.045666 -121.866516 716090180 2180649 737 9 1652 14 SRX7142152 Unrestricted 0.0 Metagenome 3300014875 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_1_16_10D DOE Joint Genome Institute (JGI) 3300014875 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9228 -106.9513 227344709 522514 261 15 556 28 SRX3780500 Unrestricted 4.48 Metagenome 3300027802 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB14_precipitate (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027802 Metagenome Analysis spades v. 3.11.1 Yes Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 926073191 1849768 597 30 951 48 SRX2838877 Unrestricted 0.0 Metagenome 3300000163 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P16 2000m DOE Joint Genome Institute (JGI) 3300000163 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 49.283333 -134.666667 131118773 289920 116 19 210 42 Unrestricted 0.0 Metagenome 3300006055 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012 DOE Joint Genome Institute (JGI) 3300006055 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, NNIvanova@lbl.gov; janet.jansson@pnnl.gov Natasha Ivanova, Natalia Ivanova; Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 504076889 1039787 217 10 385 15 SRX1987242 0.0 Metagenome 3300026264 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F14-07SV275 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026264 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 376498823 760557 359 7 505 15 SRX2782419 Unrestricted 0.0 Metagenome 3300070860 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from KU Field Station, Kansas, USA - UKFS_032-M-20180814-COMP-DNA1 3300070860 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 11636010 34192 48 3 91 7 0.0 Metagenome 3300023021 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-Q76 DOE Joint Genome Institute (JGI) 3300023021 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.2197 -122.985 38554106 100962 145 28 227 41 SRX4392949 Unrestricted 6.82 Metagenome 3300070572 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Treehaven, Wisconsin, USA - TREE_046-M-20170710-COMP-DNA1 Battelle Memorial Institute 3300070572 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 45.49355 -89.592162 5.29-5.58 8067960 25331 20 5 72 3 0.0 Metagenome 3300017973 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG DOE Joint Genome Institute (JGI) 3300017973 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 3.8381 -73.3194 2266860171 4764858 1650 11 2911 18 SRX3936923 Unrestricted 5.75 Metagenome 3300039192 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 17-054 metaSPAdes Genome Quebec 3300039192 Metagenome Analysis SPAdes v. 3.11.1 metaSPAdes mode released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 47.694086 -67.642841 895992669 1999078 490 101 845 195 0.0 Metagenome 3300047482 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Jordan River, Golan Heights, Israel - jordanrivershai6_2019_sw_WHONDRS-S19S_0058 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047482 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 32.8993 35.6136 334778394 456100 135 77 204 86 Unrestricted 0.0 Metagenome 3300013855 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00955 Weill Cornell Medical College 3300013855 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.7 -74.01 23143057 44468 19 0 22 0 SRX822917 0.0 Metagenome 3300048541 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_150318.NP2 DOE Joint Genome Institute (JGI) 3300048541 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 643841649 1295345 456 68 662 136 Unrestricted 11.45 Metagenome 3300006109 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH04Jul08 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006109 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 298100567 825128 276 59 479 95 SRX2565527 Unrestricted 0.0 Metagenome 3300037586 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037586 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.509 -76.201 543154433 1293390 38 0 64 0 SRX3197249, SRX3197248 Unrestricted 0.0 Metagenome 3300040413 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_004-M-20160727-COMP-DNA1 Battelle Memorial Institute 3300040413 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 4959335 15138 39 0 80 0 0.0 Metagenome 3300008431 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159591683 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008431 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 13090131 24031 17 0 23 0 0.0 Metagenome 3300020349 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289006-ERR315859) CEA Genoscope 3300020349 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 42.1659 17.7285 319583957 763245 226 14 443 23 0.0 Metagenome 3300042177 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from diseased Eunicella gazella from Algarve, Portugal - EG18N v2 Molecular Research LP (MR DNA) 3300042177 Metagenome Analysis Metawrap workflow v. 1.0.8 released by JGI data releasing policy Yes Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 54970514 72614 20 4 29 2 0.0 Metagenome 3300003690 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly University of Michigan 3300003690 Metagenome Analysis idba_ud released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Hydrothermal vents Marine Black smokers Marine, Hydrothermal vent plume 53.0 75062163 94674 6 0 2 0 0.0 Metagenome 3300005711 *Microbiome Permanent Draft Wild Panda gut microbial communities from Shaanxi, China Wild Panda gut microbiome from Saanxi China, sample from individual w5 Beijing Genomics Institute (BGI) 3300005711 Metagenome Analysis SOAPdenovo assembler No Yes ribozyme@ioz.ac.cn Wu Qi Yes 22006317 Host-associated Mammals Large intestine Digestive system Fecal Wild Panda gut 33.963333 107.618056 18436338 26364 13 1 18 4 0.0 Metagenome 3300009779 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC119_MetaG DOE Joint Genome Institute (JGI) 3300009779 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 22.28 114.17 1076340142 2035672 891 1 1402 2 SRX2338803 Unrestricted 0.0 Metagenome 3300002983 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - Phoenix During-Phoenix assembly at KSC-PHSF (megahit assembly) DOE Joint Genome Institute (JGI) 3300002983 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes nnivanova@lbl.gov, NNIvanova@lbl.gov; nnivanova@lbl.gov Natasha Ivanova, Natalia Ivanova; Natasha Ivanova No Engineered Built environment Unclassified Spacecraft Assembly Cleanrooms Unclassified Clean room 28.5853 -80.6508 9016159 19107 17 0 28 1 Unrestricted 0.0 Metagenome 3300051375 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - HDCR1D-14 DOE Joint Genome Institute (JGI) 3300051375 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 858166800 1657439 891 103 1479 142 Unrestricted 18.7 Metagenome 3300013699 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100468 University of Pennsylvania 3300013699 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9503159 27016 17 0 27 0 SRX756530 0.0 Metagenome 2070309005 *Microbiome Permanent Draft Wastewater viral communities from wastewater treatment facility in Singapore Wastewater viral communities from wastewater treatment facility in Singapore - IF-deduplicated data University of Illinois, Urbana-Champaign 2070309005 Metagenome Analysis not assmbled released per JGI data release policy No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Wastewater Dissolved organics (anaerobic) Nutrient removal Unclassified Wastewater 1.332 103.756 60306652 192708 6 0 17 0 0.0 Metagenome 3300000931 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and P1 (2) DOE Joint Genome Institute (JGI) 3300000931 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 299537373 547828 338 5 441 8 SRX3311662 Unrestricted 0.0 Metagenome 3300049857 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Pennsylvania, USA - whiteclaycreek2_2019_sed_WHONDRS-S19S_0038 DOE Joint Genome Institute (JGI) 3300049857 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 39.8594333 -75.7839486 118354490 307034 278 10 514 21 Restricted 0.0 Metagenome 3300014139 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Venezuela to Iowa, USA - V1 Iowa State University 3300014139 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 26014051 54607 0 2 0 1 SRX1150308 0.0 Metagenome 3300000776 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 15JUL2008 hypolimnion DOE Joint Genome Institute (JGI) 3300000776 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300014666 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01380 Weill Cornell Medical College 3300014666 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.62 -74.02 33624295 49102 30 1 29 1 SRX823320 0.0 Metagenome 3300048913 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 DOE Joint Genome Institute (JGI) 3300048913 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Rhizoplane Roots Unclassified Rhizoplane soil 42.40581 -85.40228 2119299379 3512083 741 79 1198 98 Unrestricted 13.48 Metagenome 3300013210 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100609 University of Pennsylvania 3300013210 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 24962222 61087 24 0 26 0 SRX756485 0.0 Metagenome 3300044764 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 258-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044764 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9627 -107.0299 447289823 1148592 324 20 558 51 Unrestricted 6.63 Metagenome 3300028853 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E1_2 DOE Joint Genome Institute (JGI) 3300028853 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 282661391 610075 377 64 614 97 SRX5799335 Unrestricted 0.0 Metagenome 3300070258 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_013-O-20190828-COMP-DNA2 3300070258 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 19171793 59208 56 13 112 18 0.0 Metagenome 3300029346 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 047_3_10_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029346 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 177435481 203564 220 0 263 0 0.0 Metagenome 3300003219 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 DOE Joint Genome Institute (JGI) 3300003219 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 51.62 -128.09 433241668 951067 208 2 414 12 SRX2575214 Unrestricted 0.0 Metagenome 3300001129 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP1141 DOE Joint Genome Institute (JGI) 3300001129 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -29.65 92.99 16308748 49437 76 1 139 8 SRX1982625 Unrestricted 0.0 Metagenome 3300025002 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025002 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 161205530 383694 240 4 472 6 SRX1983701 Unrestricted 0.0 Metagenome 3300024933 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 117_HOW13 (SPAdes) DOE Joint Genome Institute (JGI) 3300024933 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 63963683 92110 30 0 38 0 SRX2721196 Unrestricted 0.0 Metagenome 2065487010 *Microbiome Permanent Draft Human fecal microbial communities from Baylor College of Medicine, Texas, USA, mock community Human fecal microbial communities from Baylor College of Medicine, Texas, USA, mock community - Mock Even Illumina CeleraAssembler 2009 Baylor College of Medicine 2065487010 Metagenome Analysis released per JGI data release policy No Yes xqin@bcm.tmc.edu Xiang Qin No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 29.7 -95.38 56209738 99095 98 0 129 0 0.0 Metagenome 3300032095 *Microbiome Permanent Draft Microbial communities from the deep biosphere Oceanic crust microbial communities from Louisville Seamount Chain, Pacific Ocean - 1376-16R re-assembly The Marine Biological Laboratory 3300032095 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Deep subsurface Marine Rock Oceanic crust -28.596 -173.28 190776429 462065 144 22 278 44 SRX869326, SRX834479 0.0 Metagenome 3300002291 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP06-I3 3300002291 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300040265 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Moab, Southern Rockies & Colorado Plateau, UT, USA - MOAB_046-M-20170523-COMP-DNA1 Battelle Memorial Institute 3300040265 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.24833 -109.38827 7732811 23832 67 1 105 2 0.0 Metagenome 2042536001 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM039 Beijing Genomics Institute (BGI), Macrogen 2042536001 Metagenome Analysis released per JGI data release policy No Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 100614185 243466 103 0 140 0 0.0 Metagenome 3300050244 *Microbiome Permanent Draft Freshwater microbial communities from Yellowstone Lake, Wyoming, United States Freshwater microbial communities from Yellowstone Lake, Wyoming, United States - 2017-07-24-10.5m DOE Joint Genome Institute (JGI) 3300050244 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.412 -110.335 716586681 1075905 253 49 323 79 Restricted 22.33 Metagenome 3300025464 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 210-3 shallow-072012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025464 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 183045002 453510 132 16 209 23 SRX1987459 Unrestricted 0.0 Metagenome 3300027835 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027835 Metagenome Analysis spades v. 3.11.1 Yes Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.292222 -73.604444 1444124492 2664821 1501 37 2292 54 SRX3307852, SRX3307853 Unrestricted 0.0 Metagenome 3300040218 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_041-M-20170628-COMP-DNA1 Battelle Memorial Institute 3300040218 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 8996437 26736 59 1 89 1 0.0 Metagenome 3300035451 *Microbiome Permanent Draft STAs constructed wetland biome Wetland sediment microbial communities from Everglades, Florida, USA - STA34-Sample03_1 Merge03 University of Florida 3300035451 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy No Yes ng.hanh24@gmail.com Hanh Nguyen No Environmental Aquatic Wetlands Freshwater Sediment sediment 26.38 -80.51 6.6-8.4 50066014 69679 51 0 112 0 0.0 Metagenome 3300040772 *Microbiome Permanent Draft Cryoconite microbiome from cyroconite holes in Resolute Bay, NU, Canada Cryoconite microbial community from Resolute Bay, Canada - FullCryo Nanopolish racon polishing McGill University 3300040772 Metagenome Analysis canu v. 1.8 released by JGI data releasing policy No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Aquatic Sea ice Marine Cryoconite Cryoconite 74.44707 -95.0348 24331237 28482 35 30 40 26 0.0 Metagenome 3300029134 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019832-40 Beijing Genomics Institute (BGI) 3300029134 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 208584743 262144 176 1 263 2 0.0 Metagenome 3300022462 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1OPP2 JM80 AGRF 3300022462 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 68608429 111962 32 0 45 0 0.0 Metagenome 3300002627 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3w-12 DOE Joint Genome Institute (JGI) 3300002627 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 407812 1360 33 1 43 1 SRX1991230 Unrestricted 0.0 Metagenome 3300050303 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_65 DOE Joint Genome Institute (JGI) 3300050303 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -75.858 159.974 575389654 918150 115 24 142 32 SRX18236991 Restricted 23.58 Metagenome 3300023066 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S223-509R-6 DOE Joint Genome Institute (JGI) 3300023066 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 231750347 612892 457 21 847 34 SRX4801359 Unrestricted 7.98 Metagenome 3300056715 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Photosynthetic mat viral communities from Mushroom Spring, YNP, Wyoming, United States - MS20041105 H6B DOE Joint Genome Institute (JGI) 3300056715 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 39767566 64999 31 1 53 1 Unrestricted 0.0 Metagenome 3300012611 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100439 University of Pennsylvania 3300012611 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17299527 43394 22 0 33 0 SRX756559 0.0 Metagenome 3300070453 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_043-M-20180530-COMP-DNA1 3300070453 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 14128789 44241 81 1 153 1 0.0 Metagenome 3300012476 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.yng.070610 DOE Joint Genome Institute (JGI) 3300012476 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 74141382 201868 172 18 373 30 SRX3527489 Unrestricted 0.0 Metagenome 3300006560 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 763840445 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006560 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 1737810 2053 1 0 2 0 0.0 Metagenome 3300006872 *Microbiome Permanent Draft Biofilm microbial communities from drinking water pipes in Singapore Biofilm microbial communities from drinking water pipes in Singapore The Singapore Centre on Environmental Life Sciences Engineering 3300006872 Metagenome Analysis Newbler released per JGI data release policy No Yes mercedesceciliac@gmail.com Cecilia No Engineered Built environment Drinking water pipeline Pipeline Biofilm Drinking water pipes 1.3 103.8 212367495 330260 34 1 58 3 0.0 Metagenome 3300001096 *Microbiome Draft Wastewater bioreactor microbial communities from Singapore and Univ of Illinois at Urbana, that are terephthalate-degrading Wastewater bioreactor microbial communities from Singapore -Terephthalate degrading community TA Sludge DOE Joint Genome Institute (JGI) 3300001096 Metagenome Analysis released based on JGI ITS Yes Yes sgtringe@lbl.gov, twoyke@lbl.gov; sgtringe@lbl.gov Susannah Tringe, Tanja Woyke; Susannah Tringe Yes 20686509 Engineered Bioremediation Wastewater Terephthalate Unclassified Wastewater bioreactor 1.29973 103.771791 287381823 501692 249 5 409 3 Unrestricted 0.0 Metagenome 3300000247 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P26 500m DOE Joint Genome Institute (JGI) 3300000247 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 50.0 -145.0 117250436 287460 112 19 195 24 Unrestricted 0.0 Metagenome 3300014052 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A23_35cm_12M University of Tennessee 3300014052 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 338184024 865044 95 1 203 1 SRX710607 0.0 Metagenome 7000000525 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763496533 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000525 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 36007195 62900 0 0 0 0 0.0 Metagenome 3300036853 *Microbiome Permanent Draft Soil microbial communities from fields in the western Corn Belt region, Nebraska, United States Soil microbial communities from fields in the western Corn Belt region, Nebraska, United States - Switchgrass plot 312, no N, depth 1 DOE Joint Genome Institute (JGI) 3300036853 Metagenome Analysis metaspades v. 3.13.0 Yes Yes marty.schmer@ars.usda.gov Marty Schmer No Environmental Terrestrial Agricultural land Soil Unclassified soil 41.1677 -96.4108 1405530868 2386567 483 22 796 40 SRX8296229 Unrestricted 14.8 Metagenome 3300056768 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB31 DOE Joint Genome Institute (JGI) 3300056768 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 149016580 376429 316 9 691 16 Restricted 0.0 Metagenome 3300038531 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - BAL2 Michigan State University 3300038531 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 13.296667 -104.801667 73040469 210248 2 0 1 0 0.0 Metagenome 3300033174 *Microbiome Permanent Draft Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_15_04-R1 DOE Joint Genome Institute (JGI) 3300033174 Metagenome Analysis spades v. 3.13.0 Yes Yes ziels@mail.ubc.ca Ryan Ziels Yes 35477253 Engineered Bioreactor Unclassified Anaerobic Unclassified sludge 51.9691 5.6654 521743922 813041 459 0 628 1 SRX7542534 Unrestricted 40.03 Metagenome 3300014621 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01375 Weill Cornell Medical College 3300014621 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.65 -73.99 13242117 18511 9 0 9 0 SRX823315 0.0 Metagenome 3300038817 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog30 BILS 3300038817 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 3699588 9440 8 0 8 0 ERX1594852 0.0 Metagenome 3300043376 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-420 Genome Quebec 3300043376 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 52.85562 -105.447252 905573931 2022912 381 47 643 80 0.0 Metagenome 3300034154 *Microbiome Finished Biofilm microbial communities from bioreactors in Pennsylvania, USA Biofilm microbial community from low pH Fe oxidizing bioreactor in Pennsylvania, USA - DA_pH_2.7r The Pennsylvania State University 3300034154 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy Yes Yes dka9@psu.edu Diana Ayala No Engineered Bioreactor Unclassified Aerobic Unclassified biofilm 40.2498 -78.8489 2.7 71021360 118753 49 6 68 8 0.0 Metagenome 3300009972 *Microbiome Permanent Draft Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_224 metaG DOE Joint Genome Institute (JGI) 3300009972 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes esinger@lbl.gov; twoyke@lbl.gov Esther Singer; Tanja Woyke No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass associated 30.387 -97.7301 13984868 25567 13 43 22 77 SRX2524202 Unrestricted 0.0 Metagenome 3300014297 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLC_D1 DOE Joint Genome Institute (JGI) 3300014297 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.197102 -122.010033 236751589 573824 314 3 637 11 SRX7180842 Unrestricted 0.0 Metagenome 3300020040 *Microbiome Permanent Draft Freshwater viral communities from Chicago Sanitary Ship Canal, USA Freshwater viral communities from CSSC, Illinois, USA - 2 University of Illinois-Urbana Champaign 3300020040 Metagenome Analysis SPADES v3.10.1 released by JGI data releasing policy No Yes wtliu@illinois.edu Wen-Tso Liu No Environmental Aquatic River Freshwater Unclassified Freshwater 41.70333 -87.84111 21724904 39695 6 0 7 0 0.0 Metagenome 2046860003 *Microbiome Permanent Draft Drinking water microbial communities from Ohio, US, that has been chlorinated or chloraminated Drinking water microbial communities from Ohio, US, that has been chlorinated or chloraminated - sample 11520, Newbler assembly 454 Life Sciences 2046860003 Metagenome Analysis Newbler released per JGI data release policy No Yes matlib.robin@epamail.epa.gov Robin Matlib No Environmental Aquatic Drinking water Freshwater Unclassified Drinking water 39.8 -84.3 27923686 72267 41 0 77 0 0.0 Metagenome 3300027179 *Microbiome Permanent Draft Rhizosphere and bulk soil microbial communities from Harvard Forest, USA Bulk soil microbial communities from Harvard Forest, USA - 2Bulk_unsorted metaG (SPAdes) DOE Joint Genome Institute (JGI) 3300027179 Metagenome Analysis spades v. 3.11.1 Yes Yes deangelis@microbio.umass.edu Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Bulk soil bulk soil 42.5502 -72.1737 11211422 36248 20 2 37 0 SRX2718035 Unrestricted 0.0 Metagenome 3300013286 *Microbiome Permanent Draft Freshwater microbial communities from high-altitude lakes in Yosemite National Park, California, USA Freshwater microbial communities from Elizabeth Lake, Yosemite National Park, California, USA - 13020-23Y DOE Joint Genome Institute (JGI) 3300013286 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jmbeman@gmail.com J Michael Beman No Environmental Aquatic Lake Freshwater Unclassified Freshwater 37.8453 -119.3697 360200463 704479 287 51 418 99 SRX3008133 Unrestricted 8.08 Metagenome 7000000170 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 764062976 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000170 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 25337 34 0 0 0 0 SRX024176 0.0 Metagenome 3300001631 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF005 DOE Joint Genome Institute (JGI) 3300001631 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 1580015 5538 19 8 31 12 SRX2014324 Unrestricted 0.0 Metagenome 3300044648 *Microbiome Permanent Draft Wetland soil microbial communities from various locations Soil microbial communities from agricultural land in Fort Collins, Colorado, USA - C_No_T20_A DOE Joint Genome Institute (JGI) 3300044648 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6529 -104.9995 1121654554 1848467 511 79 864 119 SRX11476089 Unrestricted 15.05 Metagenome 3300017632 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - G13-05 University of Michigan 3300017632 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.39651 -85.40936 17311153 23999 4 0 5 0 0.0 Metagenome 3300028460 *Microbiome Permanent Draft Water-rock integrations support subglacial chemolithoautotrophy Glacial sediment microbial communities from Kotlujokull glacier, Mulakvisl, Iceland - Mul16 University of Minnesota 3300028460 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy No Yes trinityh@umn.edu Trinity Hamilton No Environmental Aquatic Ice Freshwater Glacier Glacier outflow sediment 63.560833 -18.833333 5124823 6027 2 0 2 0 0.0 Metagenome 3300047391 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Sacramento River, California, USA - NASQAN2015_042 DOE Joint Genome Institute (JGI) 3300047391 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.456 -121.5013 153963309 365008 149 19 259 30 Unrestricted 74.18 Metagenome 3300015195 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Storglaciaren, Tarfala, Sweden (Sample st-6c, vegetation/snow interface) University of Bristol 3300015195 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.865505 16.714941 6.5 268415228 511926 124 10 213 12 0.0 Metagenome 3300047509 *Microbiome Permanent Draft Forest soil microbial communities from boreal-temperate forests in Minnesota, USA Forest soil microbial communities from Hubachek Wilderness Research Center, Ely, Minnesota, USA - Ely DRY WD K7 DOE Joint Genome Institute (JGI) 3300047509 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pankaj.trivedi@colostate.edu Pankaj Trivedi No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 47.55 -92.3 1187904596 1885478 259 19 507 29 Unrestricted 0.0 Metagenome 3300028251 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_17JUL2017_LD1 DOE Joint Genome Institute (JGI) 3300028251 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 64630816 121424 13 28 25 49 SRX5345823 Unrestricted 20.76 Metagenome 3300043595 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 117-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043595 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9884 -107.0056 772632344 1734266 516 17 923 28 Unrestricted 7.17 Metagenome 3300003978 *Microbiome Permanent Draft Diffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge Diffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge - MGW_C Max Planck Institute for Plant Breeding Research 3300003978 Metagenome Analysis idba_ud500 released per JGI data release policy Yes Yes dmeier@mpi-bremen.de, dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal vent 80402791 94295 89 34 105 37 0.0 Metagenome 3300021547 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge Cinachyra sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - cg23is 200bp no Eukaryotes last University of New South Wales 3300021547 Metagenome Analysis IDBA-UD released by Emmanuelle BOTTE Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Cinachyra sp. (marine sponge) -9.8241 150.825833 72153913 131536 40 3 70 2 0.0 Metagenome 3300037510 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Soil microbial communities from Duke University greenhouse, North Carolina, United States - NS_C_2 noSuillus Control DOE Joint Genome Institute (JGI) 3300037510 Metagenome Analysis metaspades v. 3.13.0 Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Greenhouse Soil Unclassified soil 36.0 -78.0 1682440803 3007071 790 74 1377 107 SRX9172599 Unrestricted 13.8 Metagenome 3300029551 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P096V1 Beijing Genomics Institute (BGI) 3300029551 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 150055726 173070 97 0 168 0 0.0 Metagenome 3300022481 *Microbiome Permanent Draft Acid mine drainage microbial communities from Malanjkhand copper mine, India Acid mine drainage microbial communities from Malanjkhand copper mine, India - T4 Kmer_63 Indian Institute of Technology, kharagpur 3300022481 Metagenome Analysis Metavelvet v. 1.2.02 released by JGI data releasing policy No Yes sarpinaki@yahoo.com Pinaki Sar No Environmental Terrestrial Unclassified Soil Mine drainage sediment 21.984933 80.707117 41955986 129241 81 15 130 21 0.0 Metagenome 3300036672 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - IV_Palsa_F1 DOE Joint Genome Institute (JGI) 3300036672 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 273381418 636328 222 33 354 45 SRX8398200 Unrestricted 5.87 Metagenome 3300025633 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample F53-1 shallow-092012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025633 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 332185872 725031 186 39 333 62 SRX1987694 Unrestricted 0.0 Metagenome 3300000851 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from University of Liverpool Illum_XT3_IDBAUD University of Liverpool 3300000851 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 15757653 33942 78 0 111 0 0.0 Metagenome 3300025378 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH29May08 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025378 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 118388938 247759 102 58 160 77 SRX2565525 Unrestricted 0.0 Metagenome 3300042801 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S2_30_40 NMDC pilot DOE Joint Genome Institute (JGI) 3300042801 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228379 -119.2717467 72511508 201102 172 5 301 6 SRX2523286 0.0 Metagenome 3300002105 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.1 DOE Joint Genome Institute (JGI) 3300002105 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.53 -107.78 912491392 2186121 2497 25 4597 65 SRX1990989 Unrestricted 0.0 Metagenome 3300040155 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Temperate deciduous broadleaf forest soil microbial communities from Baltimore, USA - 002_R1 University of Maryland 3300040155 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate deciduous broadleaf forest soil 39.3526167 -76.6102833 9203111 29183 118 4 225 4 0.0 Metagenome 3300046063 *Microbiome Permanent Draft Halite microbial communities from Atacama Desert, Chile Halite microbial communities from Chanaral, Atacama Desert, Chile - CH2 Novogene 3300046063 Metagenome Analysis metaWRAP v. 1.3.2 No Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Halite Rock-dwelling (endoliths) Unclassified Halite -26.167 -70.302 122840017 148782 19 1 18 2 0.0 Metagenome 3300020433 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030) CEA Genoscope 3300020433 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 6.3315 -102.9484 1101632711 2800363 543 48 1111 138 0.0 Metagenome 3300046751 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_190904.NP1 DOE Joint Genome Institute (JGI) 3300046751 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 637988924 1306579 403 72 627 154 Unrestricted 12.16 Metagenome 2149837018 *Microbiome Permanent Draft Human fecal microbial communities from the University of Arizona, for HMP training Human fecal microbial communities from the University of Arizona (HMP) - Em1 Chinese National Human Genome Center, Beijing 2149837018 Metagenome Analysis released per JGI data release policy No Yes mbsulli@email.arizona.edu, mbsulli@gmail.com Matthew Sullivan No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 56.13 9.24 18920902 30893 125 9 217 0 0.0 Metagenome 3300035150 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0819M12 DOE Joint Genome Institute (JGI) 3300035150 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0387 855310152 2067034 814 5 1435 11 SRX8271939 Unrestricted 5.77 Metagenome 3300031757 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315 DOE Joint Genome Institute (JGI) 3300031757 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.7468 -122.0193 1536194455 3513048 1007 176 1607 347 SRX6423886 Unrestricted 16.68 Metagenome 3300039231 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-3_at_0-1_cm Genome Quebec 3300039231 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89934 -73.72822 376216452 1037189 665 42 1396 88 0.0 Metagenome 3300009035 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_D1_MG DOE Joint Genome Institute (JGI) 3300009035 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Soil 37.4972 -122.1293 490367838 1024596 440 6 797 17 SRX3203233 Unrestricted 0.0 Metagenome 3300069344 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_016-M-20170606-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069344 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 15683768 44826 39 1 85 0 0.0 Metagenome 3300014783 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS43_12 University of Hohenheim 3300014783 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 131576614 193356 70 0 129 0 0.0 Metagenome 3300013308 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG DOE Joint Genome Institute (JGI) 3300013308 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil miscanthus rhizosphere 42.3948 -85.3738 5465112816 11677177 3471 393 5790 592 SRX4808415 Unrestricted 6.69 Metagenome 3300018052 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2 DOE Joint Genome Institute (JGI) 3300018052 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 .5 579287374 1253606 487 19 913 35 SRX3939727 Unrestricted 5.23 Metagenome 3300022888 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_120_MG DOE Joint Genome Institute (JGI) 3300022888 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca; shallam@interchange.ubc.ca Sean Crowe; Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5847 -123.5008 635945482 1154162 402 4 628 8 SRX4482452 Unrestricted 40.87 Metagenome 3300013935 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00678 Weill Cornell Medical College 3300013935 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.98 40933465 69569 44 3 46 2 SRX822645 0.0 Metagenome 3300034817 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1 DOE Joint Genome Institute (JGI) 3300034817 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 39.6589 -79.9058 564730890 1580292 720 80 1270 125 SRX8289553 Unrestricted 6.43 Metagenome 3300012050 *Microbiome Permanent Draft Norwegian Young Sea Ice 2015 - N-ICE15 Seawater microbial communities from Norwegian Young Sea Ice, Arctic Ocean, Norway, 2015 - N-ICE15, floe 3, site 2, 250m LGC Genomics 3300012050 Metagenome Analysis Ray v 2.3.1 released by JGI data releasing policy No Yes antonioggsousa@gmail.com; cmagalhaes@ciimar.up.pt Antonio Sousa; Catarina Magalh?es No Environmental Aquatic Mesopelagic Marine Unclassified marine 82.383388 15.150055 1156830 5600 1 0 8 0 0.0 Metagenome 3300030010 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N3_4 DOE Joint Genome Institute (JGI) 3300030010 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 1274254513 2765010 229 11 336 18 SRX5357462 Unrestricted 10.57 Metagenome 3300045948 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Leaf microbial communities from farm grass in Deerfield, Massachusetts, United States - Orchardgrass_Phyllosphere_Control5 DOE Joint Genome Institute (JGI) 3300045948 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 42.4788 -72.5788 943563623 1678965 143 173 217 328 Restricted 0.0 Metagenome 3300029711 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37265R1 Beijing Genomics Institute (BGI) 3300029711 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 223873588 287958 235 1 314 1 0.0 Metagenome 3300045015 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_90m_2014 DOE Joint Genome Institute (JGI) 3300045015 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 377289364 687748 271 19 413 26 Unrestricted 34.27 Metagenome 3300015201 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300015201 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 1352094317 3341924 1384 148 2550 230 SRX3899454, SRX3899453 Unrestricted 0.0 Metagenome 3300025779 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jun08 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025779 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 100879929 219277 108 34 164 56 SRX2565359 Unrestricted 0.0 Metagenome 3300000458 *Microbiome Permanent Draft Enriched halophilic microbial communities from rock salt Saint-Guen, France Halophilic archaeon cultivated from rock salt, sample 1 Marine Biological Laboratory 3300000458 Metagenome Analysis No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Intertidal zone Marine Unclassified Enriche halophilic 48.202047 -2.932644 1100691 2610 3 0 4 0 0.0 Metagenome 3300049843 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Alabama, USA - blackwarrior_2019_sed_WHONDRS-S19S_0021 DOE Joint Genome Institute (JGI) 3300049843 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 32.54069 -87.79835 145722903 368948 434 2 894 4 Restricted 0.0 Metagenome 3300021472 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-6-7_MG DOE Joint Genome Institute (JGI) 3300021472 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.0114 -110.5956 535522184 1088135 489 2 679 3 SRX3982357 Unrestricted 16.35 Metagenome 3300042687 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A61 University of California, Davis 3300042687 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 235204515 639979 290 5 572 9 0.0 Metagenome 3300045068 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 10-597 Genome Quebec 3300045068 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 53.623604 -113.95501 1298200991 3010124 778 207 1240 384 0.0 Metagenome 3300002059 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Galicia, Spain - SR3-P2 J. Craig Venter Institute (JCVI) 3300002059 Metagenome Analysis Released per Alexandra J. Roth Schulze (April 1, 2016) No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface 42.52 -8.82 241239446 769259 53 19 158 19 0.0 Metagenome 3300060297 *Microbiome Permanent Draft Soil microbial communities from experimental field in IAREC, Washington State University, Posser, WA, USA Lab enriched soil microbial communities from experimental field in IAREC, Washington State University, Posser, WA, USA - SM_0532_SR DOE Joint Genome Institute (JGI) 3300060297 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Agricultural land Soil Unclassified Soil 46.25 -119.73 276035475 325215 58 3 56 4 Unrestricted 258.29 Metagenome 3300000737 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 21JUL2009 epilimnion DOE Joint Genome Institute (JGI) 3300000737 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300039380 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 633_B Beijing Genomics Institute (BGI) 3300039380 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 72637828 117003 80 0 168 0 ERX491285 0.0 Metagenome 3300027296 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027296 Metagenome Analysis spades v. 3.11.1 Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Host-associated Plants Nodule Roots Unclassified Root nodules 34.0722 -118.4441 476074535 455062 22 10 23 24 SRX2752615 Unrestricted 0.0 Metagenome 3300028161 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_06_06_60m DOE Joint Genome Institute (JGI) 3300028161 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 312380831 594373 378 0 625 3 SRX5244777 Unrestricted 17.66 Metagenome 3300024182 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10 DOE Joint Genome Institute (JGI) 3300024182 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 231063913 538450 276 13 517 25 SRX4547518 Unrestricted 10.64 Metagenome 3300005346 *Microbiome Draft Saline water and sediment microbial community from Etoliko Lagoon, Greece Saline sediment microbial community from Etoliko Lagoon, Greece v2 (version 2) DOE Joint Genome Institute (JGI) 3300005346 Metagenome Analysis Unkonwn released based on JGI ITS No Yes sgtringe@lbl.gov, sgtringe@lbl.gov; nckyrpides@lbl.gov Susannah Tringe, Susannah Tringe; Nikos Kyrpides No Environmental Aquatic Saline Non-marine Saline and Alkaline Sediment Saline water and sediment 38.482158 21.313175 427127693 1263951 386 8 807 13 Unrestricted 0.0 Metagenome 3300005917 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKH DOE Joint Genome Institute (JGI) 3300005917 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli, Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 713249915 1817850 673 3 1202 6 SRX2746859 Unrestricted 0.0 Metagenome 7000000471 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764062976 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000471 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 111376546 216545 0 0 0 0 0.0 Metagenome 3300035332 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_2b_2 mgh University of Alberta 3300035332 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified wastewater 56.7292 -111.3885 19407253 25854 12 0 17 0 0.0 Metagenome 3300046837 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 soil DOE Joint Genome Institute (JGI) 3300046837 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121096 -123.270783 5.3 1309869753 2116276 353 21 552 41 Unrestricted 13.55 Metagenome 7000000616 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit number 3 of subject 159510762 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000616 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 95219924 172254 0 0 0 0 0.0 Metagenome 2081372007 *Microbiome Permanent Draft Hypersaline microbial communities from Antarctic Deep Lake Hypersaline microbial communities from Antarctic Deep Lake - 24m 3.0um v1 (version 2) DOE Joint Genome Institute (JGI) 2081372007 Metagenome Analysis Newbler and/or Velvet released based on JGI ITS No Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli, Rick Cavicchioli; Michelle Allen Yes 24082106 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline -68.54 78.18 56949331 118764 0 0 0 0 Unrestricted 0.0 Metagenome 3300031831 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20 DOE Joint Genome Institute (JGI) 3300031831 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1018205626 2387355 287 25 484 33 SRX5820250 Unrestricted 11.97 Metagenome 3300037522 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_072517_103_113_jgi DOE Joint Genome Institute (JGI) 3300037522 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 1677029776 2591090 578 3 956 4 SRX9162756 Unrestricted 12.8 Metagenome 3300031517 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2 DOE Joint Genome Institute (JGI) 3300031517 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5341 -110.798 282930948 612270 175 0 194 0 SRX5650797 Unrestricted 189.2 Metagenome 3300027540 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius algarvensis Type A CAVOLI.1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027540 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 565377776 689042 7 1 7 1 SRX2712534 Unrestricted 0.0 Metagenome 7000000549 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159227541 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000549 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 89731479 128948 0 0 0 0 0.0 Metagenome 3300049006 *Microbiome Permanent Draft Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA - CNF2ST1 DOE Joint Genome Institute (JGI) 3300049006 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sydneyg@ucr.edu Sydney Glassman No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 33.6953 -117.4713 1349430152 2370104 411 33 687 46 Unrestricted 17.69 Metagenome 3300024460 *Microbiome Permanent Draft Vaginal microbial communities from lab mice Vaginal microbial communities from healthy lab mice, Madrid, Spain - G2-S16 treatment B3, day 20 Polytechnic University of Valencia 3300024460 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Vagina Reproductive system Unclassified mice vagina 40.4191094 -3.6725753 1105700 1618 0 0 0 0 0.0 Metagenome 3300026638 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_12_3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026638 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 8757031 10038 15 0 17 0 SRX2924865 Unrestricted 0.0 Metagenome 3300046511 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere DOE Joint Genome Institute (JGI) 3300046511 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1212 -123.2703 1105436600 1777754 288 88 518 131 Unrestricted 12.58 Metagenome 3300032334 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 17-112 Genome Quebec 3300032334 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.439487 -72.22285 865748456 1709792 508 119 789 213 0.0 Metagenome 3300026373 *Microbiome Permanent Draft Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 F6 DOE Joint Genome Institute (JGI) 3300026373 Metagenome Analysis spades v. 3.11.1 Yes Yes ccraft@indiana.edu Chris Craft No Environmental Aquatic Wetlands Freshwater Sediment sediment 31.3377 -81.4644 116184204 339080 384 13 677 15 SRX4796696 Unrestricted 6.33 Metagenome 3300013709 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100429 University of Pennsylvania 3300013709 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 11171677 31010 16 0 31 2 SRX756569 0.0 Metagenome 3300023271 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_1_MG DOE Joint Genome Institute (JGI) 3300023271 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Inlet Marine Unclassified seawater 48.64 -123.5 575126018 1261890 686 116 1188 208 SRX4480131 Unrestricted 14.77 Metagenome 3300036390 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Calothrix sp. FI2-JRJ7 and co-occurring heterotrophs from soil from Red Pass Lake area, Fort Irwin, California, United States - 20190112_9 DOE Joint Genome Institute (JGI) 3300036390 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Desert Soil Unclassified Soil 35.3619 -116.3226 32437587 32812 12 0 9 0 SRX8847265 Unrestricted 244.06 Metagenome 3300008617 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 2, subject 159490532 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008617 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 35094836 40299 22 1 22 10 SRX024539, SRX024540 0.0 Metagenome 3300011466 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00450 Weill Cornell Medical College 3300011466 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -73.8 14715466 24386 14 0 19 0 SRX822419 0.0 Metagenome 3300005658 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF86A DOE Joint Genome Institute (JGI) 3300005658 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 522149382 1797648 439 575 726 1038 SRX2782311 Unrestricted 0.0 Metagenome 3300042669 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A32 University of California, Davis 3300042669 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 49690868 164185 117 3 215 6 0.0 Metagenome 3300024251 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK20 DOE Joint Genome Institute (JGI) 3300024251 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 214088750 523898 285 21 470 37 SRX4547521 Unrestricted 7.9 Metagenome 3300003700 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring water microbial communities from Wilbur Hot Springs, California, USA - Wilbur source water - 6/17/14 DOE Joint Genome Institute (JGI) 3300003700 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Released by Nikos bc they passed the 6 months embargo date Yes Yes rstepanauskas@bigelow.org, rstepanauskas@bigelow.org; jkjarett@lbl.gov Ramunas Stepanauskas, Ramunas Stepanauskas; Jessica Jarett No Environmental Aquatic Unclassified Thermal springs Unclassified Hot spring 39.039162 -122.42147 7.17 9430294 17929 13 0 23 1 Unrestricted 0.0 Metagenome 3300042136 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0530F_E14_072516_1294 DOE Joint Genome Institute (JGI) 3300042136 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.1836 -97.9974 194778272 535373 293 12 453 16 Unrestricted 7.43 Metagenome 3300011828 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00764 Weill Cornell Medical College 3300011828 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -73.98 42251330 62849 27 0 30 0 SRX822730 0.0 Metagenome 3300002132 *Microbiome Permanent Draft Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t6BS2 (105f) 3300002132 Metagenome Analysis released by JGI data releasing policy No Yes daniel.herlemann@io-warnemuende.de, daniel.herlemann@emu.ee Daniel Herlemann, Daniel P. Herlemann No Environmental Aquatic Unclassified Unclassified Unclassified Marine 57.305 20.0745 156180833 705123 183 17 373 30 0.0 Metagenome 3300009464 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS866 no min length Marine Biological Laboratory 3300009464 Metagenome Analysis Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow hydrothermal vent diffuse flow 18.37 -81.798 124385183 580358 116 8 325 16 0.0 Metagenome 3300042923 *Microbiome Permanent Draft Wetland soil microbial communities from various locations Soil microbial communities from agricultural land in Fort Collins, Colorado, USA - L_E1_T20_C DOE Joint Genome Institute (JGI) 3300042923 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6529 -104.9995 1367658028 1925388 591 89 712 146 Unrestricted 35.85 Metagenome 3300070447 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_002-M-20190618-COMP-DNA1 3300070447 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 4670138 14783 19 0 48 2 0.0 Metagenome 3300012437 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100390 University of Pennsylvania 3300012437 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9908334 17821 12 4 30 9 SRX756267 0.0 Metagenome 3300042344 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME04Oct2017-rr0748 DOE Joint Genome Institute (JGI) 3300042344 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 838918520 1326472 380 73 524 116 Unrestricted 17.33 Metagenome 3300009002 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573 DOE Joint Genome Institute (JGI) 3300009002 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 420494822 814714 421 120 663 159 SRX2753514 Unrestricted 0.0 Metagenome 3300020325 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000034 (ERX556073-ERR598966) CEA Genoscope 3300020325 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 20.8151 63.5046 251592048 651219 133 4 247 7 0.0 Metagenome 3300036847 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_July_plot3_rep2 DOE Joint Genome Institute (JGI) 3300036847 Metagenome Analysis metaspades v. 3.13.0 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6591 -80.6279 1544100726 2594253 568 3 1049 12 SRX8179629 Unrestricted 13.48 Metagenome 3300026154 *Microbiome Permanent Draft Anaerobic reactors microbiome study Activated sludge microbial communities from lab. scaled anaerobic digester in Belvaux, Luxembourg - ACS0-2 University of Luxembourg 3300026154 Metagenome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 49.506216 5.943617 187481813 236270 69 3 194 17 0.0 Metagenome 3300041841 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - TR_32_wk_5 DOE Joint Genome Institute (JGI) 3300041841 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9707 -107.059 81058269 260929 213 23 414 25 SRX14809902 Unrestricted 6.66 Metagenome 3300042203 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D10_1 DOE Joint Genome Institute (JGI) 3300042203 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 465296731 735531 237 28 320 25 Unrestricted 26.1 Metagenome 3300000253 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P12 1000m DOE Joint Genome Institute (JGI) 3300000253 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 48.97 -130.666667 17706213 53397 20 5 39 14 Unrestricted 0.0 Metagenome 3300033980 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Aug2015-rr0007 DOE Joint Genome Institute (JGI) 3300033980 Metagenome Analysis spades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 992799898 1993804 568 94 848 148 SRX7621636 Unrestricted 12.79 Metagenome 3300018875 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - mid-late stage, 49.5 hrs after wetting v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018875 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 261772001 530254 328 10 530 20 0.0 Metagenome 3300001145 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 DOE Joint Genome Institute (JGI) 3300001145 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 50776636 137987 146 10 253 26 SRX3312088 Unrestricted 0.0 Metagenome 3300059467 *Microbiome Permanent Draft Sorghum rhizosphere and bulk soil microbial communities from University of Arizona Maricopa Agricultural Center, AZ, USA Soil microbial communities from sorghum plot in University of Arizona Maricopa Agricultural Center, AZ, USA - plot8_0-15_20210708 DOE Joint Genome Institute (JGI) 3300059467 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Agricultural land Soil Unclassified Soil 33.07735 -111.974819 304726768 773425 462 22 925 25 Unrestricted 7.4 Metagenome 3300043459 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-394 Genome Quebec 3300043459 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 54.646202 -111.652296 1225852626 2957495 539 142 934 292 0.0 Metagenome 3300014528 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 70_4M Beijing Genomics Institute (BGI) 3300014528 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 68085832 78070 31 0 51 0 ERX491300 0.0 Metagenome 3300038373 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - RDC-3_at_0-1_cm Genome Quebec 3300038373 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.80159 -73.41443 522054105 1423889 712 28 1728 56 0.0 Metagenome 3300022670 *Microbiome Permanent Draft Deep seafloor sediment microbial communities from Yap Trench, western Pacific Ocean Marine sediment microbial community from Yap Trench, western Pacific Ocean - 37I-Yap-S02 Third Institute of Oceanography, State Oceanic Administration 3300022670 Metagenome Analysis idba v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Sediment Marine Unclassified sediment 9.64505 138.82083 1129679812 2110113 379 9 869 9 0.0 Metagenome 3300038638 *Microbiome Permanent Draft Freshwater sediment microbial communities from Chandeleur Islands, USA Vegetated sediment core microbial communities from Chandeleur Islands, USA - SVegC4 University of Alabama 3300038638 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Wetlands Freshwater Sediment Vegetated sediment core 29.862806 -88.841194 5924690 18498 27 0 52 0 0.0 Metagenome 3300044541 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 420-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044541 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9768 -107.0666 1120425127 2670906 540 39 938 72 Unrestricted 7.39 Metagenome 3300047461 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_141112.NP1 DOE Joint Genome Institute (JGI) 3300047461 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 1043919904 2213079 570 95 995 144 Unrestricted 11.77 Metagenome 3300001538 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina University of Tennessee 3300001538 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 856296993 3054118 1216 40 2247 89 0.0 Metagenome 3300039833 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA Corn field soil microbial communities from Boone County, Iowa, USA - CC43-LM-July2012 Iowa State University 3300039833 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land Corn field soil 42.01375 -93.783837 28999960 88937 70 3 116 4 0.0 Metagenome 3300025972 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025972 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 3829282155 9062315 1666 216 3011 329 SRX2740291 Unrestricted 0.0 Metagenome 3300025394 *Microbiome Permanent Draft Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico and Hudson Canyon, USA Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN8B Hudson Canyon (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025394 Metagenome Analysis spades v. 3.11.1 Yes Yes mcredmond@uncc.edu Molly C. Redmond No Environmental Aquatic Cold seeps Marine Unclassified Methane seep mesocosm 39.29 -72.2 170210714 282441 124 2 191 4 SRX2754426 Unrestricted 0.0 Metagenome 3300039089 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - WEM-3_at_0-1_cm Genome Quebec 3300039089 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89896 -73.80984 566499061 1472477 768 28 1612 50 0.0 Metagenome 3300007111 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 158944319 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007111 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 127769119 178136 121 1 174 0 0.0 Metagenome 3300022392 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Garden Lake, Rottnest Island (WA - Australia) - GL1GP1 JM64 AGRF 3300022392 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.995604 115.536873 39383477 76397 47 0 61 0 0.0 Metagenome 3300036933 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 S1 20-24 DOE Joint Genome Institute (JGI) 3300036933 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0475 463820270 764498 131 4 205 7 SRX8138707 Unrestricted 16.32 Metagenome 3300041448 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass leaf microbial community from Lincoln, Canterbury, New Zealand - RGL17_5 MetaG AgResearch, New Zealand, Mosgeil 3300041448 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 642331440 966980 66 51 133 86 0.0 Metagenome 3300049241 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB21 DOE Joint Genome Institute (JGI) 3300049241 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 165139621 423899 339 7 735 7 Unrestricted 21.29 Metagenome 3300002350 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 13JUL2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002350 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 38943294 97438 76 9 152 18 SRX1989906 Unrestricted 0.0 Metagenome 3300040300 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_003-M-20160823-COMP-DNA1 Battelle Memorial Institute 3300040300 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 6007867 19054 49 5 73 11 0.0 Metagenome 3300011421 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT769_2 DOE Joint Genome Institute (JGI) 3300011421 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9779 -107.0023 312148846 749498 363 24 796 36 SRX3539420 Unrestricted 0.0 Metagenome 3300053142 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere DOE Joint Genome Institute (JGI) 3300053142 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.587958 -123.193966 907474346 1798511 502 131 802 227 Unrestricted 0.0 Metagenome 3300012565 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100547 University of Pennsylvania 3300012565 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17884507 26972 17 2 22 5 SRX756207 0.0 Metagenome 3300021553 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge Cinachyra sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - cg27is 200bp no Eukaryotes last University of New South Wales 3300021553 Metagenome Analysis IDBA-UD released by Emmanuelle BOTTE Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Cinachyra sp. (marine sponge) -9.8241 150.825833 99322879 179169 45 2 74 4 0.0 Metagenome 3300057247 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Wyoming, USA - R_H3_S1 DOE Joint Genome Institute (JGI) 3300057247 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 41.03056 -106.63421 12848082 26243 25 12 68 22 Unrestricted 980.7 Metagenome 3300030319 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P075V1 Beijing Genomics Institute (BGI) 3300030319 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 193430019 245765 145 1 237 2 0.0 Metagenome 3300012359 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG DOE Joint Genome Institute (JGI) 3300012359 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.5673 -123.4758 2602908992 5107363 1385 75 2479 147 SRX3372900 Unrestricted 0.0 Metagenome 7000000680 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 764811490 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000680 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 3989854 4396 0 0 0 0 0.0 Metagenome 3300027689 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300027689 Metagenome Analysis spades v. 3.11.1 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 502122576 1052891 258 93 394 143 Unrestricted 0.0 Metagenome 3300039316 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 565_12M Beijing Genomics Institute (BGI) 3300039316 Metagenome Analysis Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 76298023 87123 51 0 92 0 ERX491207 0.0 Metagenome 3300060666 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_001-O-20210728-comp-1 DOE Joint Genome Institute (JGI) 3300060666 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 40.042345 -105.558975 1272937701 2205668 368 139 663 187 Unrestricted 16.02 Metagenome 3300013444 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100615 University of Pennsylvania 3300013444 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 19433687 47111 26 0 58 0 SRX756479 0.0 Metagenome 3300043337 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-277 Genome Quebec 3300043337 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.426958 -99.435161 1140060943 2622784 355 74 513 110 0.0 Metagenome 3300013902 *Microbiome Permanent Draft Baboon gut microbial communities from fecal samples in Kenya Baboon gut microbial communities from fecal samples in Kenya - F11 Duke University 3300013902 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Baboon gut 2.717 37.1 95218814 173015 86 4 130 1 SRX834638 0.0 Metagenome 3300031233 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2 DOE Joint Genome Institute (JGI) 3300031233 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 1364551461 2961011 639 145 985 209 SRX5357861 Unrestricted 9.76 Metagenome 2119805009 *Microbiome Draft Soil microbial communities from FACE and OTC sites in USA Soil microbial communities from sample at FACE Site NTS_007 Nevada Test Site DOE Joint Genome Institute (JGI) 2119805009 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes kuske@lanl.gov Cheryl Kuske No Environmental Terrestrial Sand Soil Desert Soil 36.766667 -115.95 384251082 1027241 486 19 884 0 Unrestricted 0.0 Metagenome 3300048764 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 P3 20-24 DOE Joint Genome Institute (JGI) 3300048764 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3535 19.0473 686372757 948175 176 1 215 2 Restricted 17.03 Metagenome 3300069408 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_001-O-20170619-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069408 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 81567936 245452 144 24 255 40 0.0 Metagenome 3300027955 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm May2015 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027955 Metagenome Analysis spades v. 3.11.1 Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0991 -99.1044 364923663 791570 385 0 656 2 SRX2753784 Unrestricted 0.0 Metagenome 3300001417 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 210-3 shallow-092012 DOE Joint Genome Institute (JGI) 3300001417 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 64153891 181973 96 10 166 17 SRX1987663 Unrestricted 0.0 Metagenome 3300027667 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027667 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 395731146 942871 267 26 521 46 SRX3312088 Unrestricted 0.0 Metagenome 3300044913 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_6_A DOE Joint Genome Institute (JGI) 3300044913 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 160097578 205534 90 1 101 2 Unrestricted 80.3 Metagenome 3300013222 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100539 University of Pennsylvania 3300013222 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14219392 29055 8 5 12 4 SRX756215 0.0 Metagenome 3300033890 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-1-M DOE Joint Genome Institute (JGI) 3300033890 Metagenome Analysis spades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0468 393828596 922425 280 3 551 11 SRX8137854, SRX8137855 Unrestricted 0.0 Metagenome 3300007303 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 158944319 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007303 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 3087526 4631 2 0 5 0 0.0 Metagenome 3300039067 *Microbiome Permanent Draft Freshwater lake viral communities from Lake Michigan, near Chicago, USA Freshwater lake viral communities from Lake Michigan, near Chicago, USA- 95Street140527..1V Genewiz Inc., Loyola University 3300039067 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.7189 -87.5256 33231822 66273 34 0 39 0 0.0 Metagenome 3300020238 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B000000475 (ERX556004-ERR599068) CEA Genoscope 3300020238 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -34.8986 18.03 209701998 553139 227 8 402 24 0.0 Metagenome 3300011112 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from Mariana Trench to uncover new lineages of life (NeLLi) - CR02 metaG DOE Joint Genome Institute (JGI) 3300011112 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Ocean trench Marine Sediment Deep subsurface 12.6311 144.7214 1949658507 3968737 1044 12 1792 25 SRX4807402 Unrestricted 0.0 Metagenome 3300028126 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 60D DOE Joint Genome Institute (JGI) 3300028126 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 244784018 610144 222 32 343 54 SRX5172023 Unrestricted 17.07 Metagenome 3300030086 *Microbiome Permanent Draft Human feces microbial communities from Tubingen, Germany Human feces microbial communities from Tubingen, Germany - B2 University of Tuebingen 3300030086 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 48.52 9.05 45641554 54818 65 0 70 0 0.0 Metagenome 3300008130 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159814214 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008130 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 90733258 112261 68 0 73 0 0.0 Metagenome 2124908027 *Microbiome Permanent Draft Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan State University, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v1 DOE Joint Genome Institute (JGI) 2124908027 Metagenome Analysis released based on JGI ITS No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Miscanthus rhizosphere 42.406189 -85.40016 44948789 83119 48 6 90 0 Unrestricted 0.0 Metagenome 3300004683 *Microbiome Permanent Draft Soil microbial communities from Sao Raimundo Nonato, Brazil Soil microbial communities from Sao Raimundo Nonato, Brazil - Metagenomic clone_MOC University of Campinas 3300004683 Metagenome Analysis IDBA Hybrid released per JGI data release policy No Yes gilenolacerdajr@hotmail.com Gileno Lacerda Jr., Gileno Vieira Lacerda Junior No Environmental Terrestrial Unclassified Soil Unclassified Soil -9.015859 -42.699586 39076 33 0 0 0 0 0.0 Metagenome 3300032305 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 17-063 Genome Quebec 3300032305 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.290487 -68.405921 663484838 1419831 295 74 609 174 0.0 Metagenome 3300027556 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Olavius algarvensis symbiont microbial communities from Tuscany, Italy - Type G ELBA extract 2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027556 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 42.8072 10.1411 617781792 723836 10 3 11 4 SRX2554373 Unrestricted 0.0 Metagenome 3300043165 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_3500m_C2_0cm2cm (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043165 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.6077 -122.6196 434681321 710281 191 4 316 8 SRX9141344 Unrestricted 38.07 Metagenome 3300012803 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched millipede-associated microbial communities from UW Madison campus, WI, USA - HID1971K_E11 MG DOE Joint Genome Institute (JGI) 3300012803 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 68760214 81226 55 0 77 0 SRX3564671 Unrestricted 0.0 Metagenome 3300025974 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Tolay_CordA_D2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025974 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.15012 -122.438774 117868758 248695 144 1 256 1 SRX7144827 Unrestricted 0.0 Metagenome 3300025392 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jun07 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025392 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 132507129 281077 73 33 114 91 SRX2565226 Unrestricted 0.0 Metagenome 3300005350 *Microbiome Permanent Draft Bioreactor Anammox bacterial community from Nijmegen, The Netherlands Bioreactor anammox bacterial community from Nijmegen, The Netherlands - Brocadia fulgida enrichment v2 (version 2) DOE Joint Genome Institute (JGI) 3300005350 Metagenome Analysis lucy / pga released based on JGI ITS No Yes sgtringe@lbl.gov, m.jetten@science.ru.nl; m.jetten@microbiology.ru.nl Susannah Tringe, Mike Jetten; mike jetten Yes 22103529 Engineered Wastewater Nitrogen removal Nutrient removal Anammox Bioreactor 51.842 5.858 4947964 6948 1 0 2 0 Unrestricted 0.0 Metagenome 3300011241 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 11 - S13.2.50.a - transect 2, age 50 years, surface depth). University of Bristol 3300011241 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes EAEloeFadrosh@lbl.gov; maisie.nash@bristol.ac.uk; ama@envs.au.dk Emiley Eloe-Fadrosh; Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 78.92166667 12.07666667 7.5 29749304 91105 115 4 220 7 0.0 Metagenome 3300059771 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059771 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2327 -123.9168 154263766 335423 141 8 232 10 SRX2753613 Unrestricted 0.0 Metagenome 3300049421 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River, Colorado, USA - Cellobiose_Short DOE Joint Genome Institute (JGI) 3300049421 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 297646432 745978 464 11 633 14 Restricted 15.89 Metagenome 3300026330 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_05_20cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026330 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 609055512 1112361 409 14 705 24 SRX2521037 Unrestricted 0.0 Metagenome 3300053144 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 endosphere DOE Joint Genome Institute (JGI) 3300053144 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.120945 -123.270302 421388451 606822 94 83 125 104 Unrestricted 15.71 Metagenome 3300015359 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015 DOE Joint Genome Institute (JGI) 3300015359 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 935904104 2072995 616 14 1161 36 SRX3048034 Unrestricted 0.0 Metagenome 3300043118 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Shale gas microbial communities from Fort St. John, British Columbia, Canada - UGR 52.1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043118 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back shale gas 56.0 -122.0 25844192 38997 24 0 32 0 SRX8356291 Unrestricted 534.85 Metagenome 3300028674 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E2_1 DOE Joint Genome Institute (JGI) 3300028674 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 681454661 1789897 839 143 1299 223 SRX5355611 Unrestricted 0.0 Metagenome 3300006326 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0770m University of Hawaii 3300006326 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Aphotic zone Marine 22.75 -158.0 348303680 797855 502 34 741 60 0.0 Metagenome 3300048762 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 P1 50-54 DOE Joint Genome Institute (JGI) 3300048762 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.047 360210712 498065 128 4 180 5 Restricted 23.55 Metagenome 3300044781 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_270 DOE Joint Genome Institute (JGI) 3300044781 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 755200432 1842889 615 13 1169 23 Unrestricted 8.05 Metagenome 3300007859 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160704339 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007859 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 3568224 6979 6 0 17 0 0.0 Metagenome 3300039688 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA Corn field soil microbial communities from Boone County, Iowa, USA - CC35-WS-July2012 Iowa State University 3300039688 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land Corn field soil 42.01375 -93.783837 50639163 144270 81 2 190 0 0.0 Metagenome 3300024309 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant dump, University of Wisconsin, Madison, United States - 2B20A (version 2) DOE Joint Genome Institute (JGI) 3300024309 Metagenome Analysis spades v. 3.11.1 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0758 -89.4125 171320524 220446 93 2 110 2 SRX4821869, SRX4821868 Unrestricted 0.0 Metagenome 3300039407 *Microbiome Permanent Draft Terrestrial soil microbial communities from rice fields in China Terrestrial soil microbial communities from rice field in Fujian Fuzhou, China - 39FFZ Shanghai Personal Biotechnology Co., Ltd. 3300039407 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes xjzhang68@sjtu.edu.cn Xiaojun Zhang No Environmental Terrestrial Paddy field/soil Soil Unclassified Terrestrial soil 119.02 26.06 2826130212 6837267 1466 10 2881 43 0.0 Metagenome 3300013442 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100700 University of Pennsylvania 3300013442 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8064287 14182 23 6 35 15 SRX756150 0.0 Metagenome 3300012046 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ833 (21.06) DOE Joint Genome Institute (JGI) 3300012046 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.0467 163.6821 817562600 1800040 767 39 1355 78 SRX3372532 Unrestricted 0.0 Metagenome 3300027088 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - Naphthalene biodegradation metagenome 13C3doseB (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027088 Metagenome Analysis spades v. 3.11.1 Yes Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.292222 -73.604444 29971064 73825 34 5 37 10 Unrestricted 0.0 Metagenome 3300060385 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210604_08_13 DOE Joint Genome Institute (JGI) 3300060385 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 713808637 1060403 304 151 377 232 Unrestricted 26.6 Metagenome 3300011114 *Microbiome Finished Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb Chunlab, Inc 3300011114 Metagenome Analysis SPAdes 3.8.2 released by JGI data releasing policy No Yes krmoon518@gmail.com; chojc@inha.ac.kr Kira Moon; Jang-Cheon Cho No Environmental Aquatic Lake Freshwater Unclassified Freshwater 37.947421 127.818872 22677118 32583 0 0 0 0 0.0 Metagenome 3300037236 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 S3 30-34 DOE Joint Genome Institute (JGI) 3300037236 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 545578242 930051 176 2 295 4 SRX8144861 Unrestricted 14.98 Metagenome 3300013224 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100419 University of Pennsylvania 3300013224 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 21206097 35594 15 0 17 0 SRX756579 0.0 Metagenome 3300003861 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from the University of Notre Dame, USA, of lakes that contribute to methane emissions Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR DOE Joint Genome Institute (JGI) 3300003861 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes sjones20@nd.edu Stuart Jones No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 41.7 -86.23 591943146 1510507 752 84 1216 134 Unrestricted 0.0 Metagenome 3300003147 *Microbiome Permanent Draft Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) Planktonic microbial communities from North Pacific Subtropical Gyre DOE Joint Genome Institute (JGI) 3300003147 Metagenome Analysis Made public because these are downloaded from Genbank No Yes delong@mit.edu Edward DeLong Yes 16439655 Environmental Aquatic Oceanic Marine Photic zone Marine 22.887959 -158.027466 77402504 118165 71 1 101 1 0.0 Metagenome 3300070691 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lyndon B. Johnson National Grassland, Texas, USA - CLBJ_033-M-20190415-COMP-DNA1 3300070691 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 680582 2422 15 1 30 0 0.0 Metagenome 3300049828 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from South Valley, New Mexico, USA - riogrande_2019_sed_WHONDRS-S19S_0080 DOE Joint Genome Institute (JGI) 3300049828 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 34.950811 -106.681374 665933030 1638776 1102 51 2171 64 Unrestricted 12.02 Metagenome 3300035146 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0817S02 DOE Joint Genome Institute (JGI) 3300035146 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0388 706609197 1557374 541 1 970 3 SRX8271401 Unrestricted 6.16 Metagenome 3300027716 *Microbiome Permanent Draft Wetland sediment microbial communities from St. Louis River estuary, Michigan under dissolved organic matter induced mercury methylation Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare2Fresh (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027716 Metagenome Analysis spades v. 3.11.1 Yes Yes diana.nemergut@duke.edu.deleted Diana Nemergut No Environmental Aquatic Wetlands Freshwater Sediment Wetland sediment 46.6972164 -92.3279105 507849726 1339087 649 48 1208 69 SRX3194911 Unrestricted 0.0 Metagenome 3300030493 *Microbiome Permanent Draft Bioremediated contaminated groundwater microbial communities from North Railroad Avenue plume (NRAP), New Mexico Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample HSE6-23 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300030493 Metagenome Analysis spades v. 3.12.0 Yes Yes NNIvanova@lbl.gov; rebecca.reiss@nmt.edu Natalia Ivanova; Rebecca Reiss Yes 27980706 Environmental Aquatic Groundwater Deep subsurface Contaminated Bioremediated contaminated groundwater 35.9918 -106.0796 453618199 872260 601 6 980 6 SRX2554407 Unrestricted 0.0 Metagenome 3300055559 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.17C.13 SIP fraction DOE Joint Genome Institute (JGI) 3300055559 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 158625913 319095 131 63 259 105 Unrestricted 11.84 Metagenome 3300070907 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_080-O-20190826-COMP-DNA1 3300070907 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 12049809 38162 51 6 86 8 0.0 Metagenome 3300013600 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100741 University of Pennsylvania 3300013600 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 5506211 9371 7 4 11 5 SRX756109 0.0 Metagenome 3300002134 *Microbiome Permanent Draft Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t6FKB2 (101f) 3300002134 Metagenome Analysis released by JGI data releasing policy No Yes daniel.herlemann@io-warnemuende.de, daniel.herlemann@emu.ee Daniel Herlemann, Daniel P. Herlemann No Environmental Aquatic Unclassified Unclassified Unclassified Marine 57.305 20.0745 195522027 776577 209 33 467 40 0.0 Metagenome 3300009462 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS872 no min length Marine Biological Laboratory 3300009462 Metagenome Analysis Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow deep sea hydrothermal vent diffuse flow 18.375 -81.797 143000820 577634 221 9 525 19 0.0 Metagenome 3300070227 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_038-M-20180726-COMP-DNA1 3300070227 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 136148258 397066 136 10 292 17 0.0 Metagenome 3300026152 *Microbiome Finished Whole metagenomic sequencing of soil communities from Valley of Flowers National Park Uttarakhand, India Soil microbial communities from Valley of Flowers National Park, Chamoli, Uttarakhand, India - VOF1 National Bureau of Agriculturally Important Microorganisms, Indian Council of Agricultural Research 3300026152 Metagenome Analysis MetaSpades v. 3.11 released by JGI data releasing policy No Yes arjun.iari@gmail.com; hillol.chakdar@gmail.com Arjun Singh; Dr Hillol Chakdar No Environmental Terrestrial Organic layer Soil Unclassified Soil 30.72 79.59 9.5 37352961 109827 63 4 104 12 0.0 Metagenome 3300006190 *Microbiome Permanent Draft Marine microbial communities from the West Antarctic Peninsula, for metatranscriptomic analysis Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA DOE Joint Genome Institute (JGI) 3300006190 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes mattcott@udel.edu Matthew Cottrell, Matthew T. Cottrell No Environmental Aquatic Coastal Marine Unclassified Marine -64.8156 -64.0406 564462456 1566335 291 35 521 56 SRX2848091 Unrestricted 0.0 Metagenome 3300042760 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N3_40_50 NMDC pilot DOE Joint Genome Institute (JGI) 3300042760 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37379502 -119.2722385 43390261 122992 142 2 261 2 SRX2522696 0.0 Metagenome 3300042342 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME26May2016-rd0738 DOE Joint Genome Institute (JGI) 3300042342 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 551882649 872524 163 21 212 34 Unrestricted 22.32 Metagenome 3300021498 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG DOE Joint Genome Institute (JGI) 3300021498 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.0114 -110.5931 157464716 339111 122 0 175 0 SRX3982110 Unrestricted 25.85 Metagenome 3300009004 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01 DOE Joint Genome Institute (JGI) 3300009004 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 738583690 1388821 601 14 1009 27 SRX3197834 Unrestricted 0.0 Metagenome 3300066848 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from Gulf of California, Mexico - CTD-FK190211-21-100m-0.65 DOE Joint Genome Institute (JGI) 3300066848 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 27.58537 -111.46285 117290339 214519 126 28 217 39 Restricted 0.0 Metagenome 3300019841 *Microbiome Permanent Draft Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil - Buba_C4 Center for Advanced Technologies in Genomics, Sao Paulo University 3300019841 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 2581523 6024 6 0 17 0 0.0 Metagenome 3300045203 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_4_A DOE Joint Genome Institute (JGI) 3300045203 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 204294834 244301 117 1 143 2 Unrestricted 134.31 Metagenome 3300020470 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053) CEA Genoscope 3300020470 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 14.5375 70.0244 1277741350 3159004 404 16 752 20 0.0 Metagenome 3300029291 *Microbiome Permanent Draft Lab enriched (methane oxidizing communities) paddy soil communities from Xiamen, Fujian, China Lab enriched paddy soil microbial communities from Xiamen, Fujian, China - R3 Novogene 3300029291 Metagenome Analysis IDBA v. 1.1.3 released by JGI data releasing policy No Yes yuezheng@uw.edu Yue Zheng No Environmental Terrestrial Unclassified Soil Agricultural land soil 24.45 118.4 28645335 28337 10 9 16 12 0.0 Metagenome 3300048623 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 soil DOE Joint Genome Institute (JGI) 3300048623 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121225 -123.270853 4.98 262130586 483052 208 12 394 21 Unrestricted 19.67 Metagenome 3300038993 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-10-2_at_6-7_cm Genome Quebec 3300038993 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.88147 -73.76618 1078019926 2432031 624 9 1245 8 0.0 Metagenome 3300043822 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_CSTR_044 (downsampled for mapping) DOE Joint Genome Institute (JGI) 3300043822 Metagenome Analysis metaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 78475494 78150 71 0 61 0 SRX12727507, SRX12727508, SRX12727509 Unrestricted 0.0 Metagenome 3300003468 *Microbiome Permanent Draft Air microbial communities from Cairo, Egypt Air microbial communities from Cairo, Egypt - Sample from Downtown Cairo 3300003468 Metagenome Analysis released by JGI data releasing policy No Yes s.elgogary@aucegypt.edu Sawsan El Gogary, Sawsan ElGogary No Environmental Air Unclassified Outdoor Air Unclassified Air 30.06 31.25 0 0 0 0 0 0 0.0 Metagenome 2236876009 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Marine microbial communities from Columbia River, CM, sample from Newport Hydroline, GS310-0p8-Hyp-75m University of South Carolina 2236876009 Metagenome Analysis No Yes mariyasmit@hotmail.com Mariya Smit, Mariya W. Smit No Environmental Aquatic Intertidal zone Marine Unclassified Marine estuarine 44.651 -124.295 95066886 290484 330 5 532 6 0.0 Metagenome 3300025670 *Microbiome Permanent Draft Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico and Hudson Canyon, USA Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM15B Gulf of Mexico (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025670 Metagenome Analysis spades v. 3.11.1 Yes Yes mcredmond@uncc.edu Molly C. Redmond Yes 28871146 Environmental Aquatic Cold seeps Marine Unclassified Methane seep mesocosm 27.37 -90.57 479676803 863703 272 2 329 5 Unrestricted 0.0 Metagenome 3300026281 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026281 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Prmafrost soil 68.6139 -149.3145 537906404 1258157 339 26 573 56 SRX2739145 Unrestricted 0.0 Metagenome 3300003415 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_300_biof DOE Joint Genome Institute (JGI) 3300003415 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioremediation Unclassified Thiocyanate Unclassified Wastewater bioreactor -33.936637 18.478905 104989199 171928 89 9 185 11 SRX2576693 Unrestricted 0.0 Metagenome 3300035693 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 11_7.5_N_13_2 DOE Joint Genome Institute (JGI) 3300035693 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1863 -2.2145 2454865346 5823238 480 1 787 2 SRX8234222 Unrestricted 8.03 Metagenome 3300028970 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 536_12M Beijing Genomics Institute (BGI) 3300028970 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 89720779 100256 53 0 104 1 ERX491185 0.0 Metagenome 3300009180 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG DOE Joint Genome Institute (JGI) 3300009180 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 48.2311 -71.2508 1249693099 2377077 654 106 1079 162 SRX2996493 Unrestricted 0.0 Metagenome 3300064818 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 680 in Bonnyville, Alberta, Canada - S00JY_0729 Microbiome Insights 3300064818 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 54.19361867 -110.4724417 24111327 35727 26 1 47 1 0.0 Metagenome 3300025888 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Incubations 011-21A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025888 Metagenome Analysis spades v. 3.11.1 Yes Yes mlharmon_smith@lbl.gov; janet.jansson@pnnl.gov Miranda Harmon-Smith; Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.270939 -156.810374 1216889634 2335375 601 4 917 8 SRX1990923 Unrestricted 0.0 Metagenome 3300015050 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.D DOE Joint Genome Institute (JGI) 3300015050 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 118345831 283207 1 0 2 0 SRX7205047 Unrestricted 100.16 Metagenome 3300026039 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleB_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026039 Metagenome Analysis spades v. 3.11.1 released Yes Yes jzz0026@lbl.gov; sgtringe@lbl.gov Jinglie Zhou; Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.052509 -121.76873 77031072 201919 239 5 412 4 SRX7181928 Unrestricted 0.0 Metagenome 3300021474 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O DOE Joint Genome Institute (JGI) 3300021474 Metagenome Analysis spades v. 3.11.1-check Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 2962650588 6281885 848 168 1465 252 SRX4023126 Unrestricted 9.76 Metagenome 3300042948 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-444 Genome Quebec 3300042948 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 53.037201 -108.278678 1649589109 3707177 698 174 1108 416 0.0 Metagenome 3300022779 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY1 Version 2 University of New South Wales 3300022779 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au; z5119396@unsw.edu.au Holly Bennett; Hung Nguyen No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 9737033 18585 11 0 22 0 0.0 Metagenome 3300051166 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BG2-02_D100 DOE Joint Genome Institute (JGI) 3300051166 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3634 19.0475 139050892 247949 68 16 120 21 Restricted 56.75 Metagenome 3300012201 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG DOE Joint Genome Institute (JGI) 3300012201 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.5673 -123.4758 2116713842 4191662 1359 73 2552 149 SRX3372685 Unrestricted 0.0 Metagenome 3300029983 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E2_1 DOE Joint Genome Institute (JGI) 3300029983 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 461847704 889698 407 70 646 117 SRX5357440 Unrestricted 10.5 Metagenome 3300042015 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 DOE Joint Genome Institute (JGI) 3300042015 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.8942 -103.685 502639329 1212170 573 43 1096 77 SRX14829319 Unrestricted 7.26 Metagenome 3300045687 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_2_C DOE Joint Genome Institute (JGI) 3300045687 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 169859820 205487 101 1 113 2 Unrestricted 125.71 Metagenome 3300045408 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Leaf microbial communities from farm grass in Deerfield, Massachusetts, United States - Orchardgrass_Phyllosphere_Drought4 DOE Joint Genome Institute (JGI) 3300045408 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 42.4788 -72.5788 821596564 1459235 126 174 249 236 Unrestricted 0.0 Metagenome 3300011843 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00850 Weill Cornell Medical College 3300011843 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -73.99 41118766 65734 30 0 43 0 SRX822816 0.0 Metagenome 3300005059 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 67 soap2 Center for Advanced Technologies in Genomics, Sao Paulo University 3300005059 Metagenome Analysis SOAPdenovo2 released per PI's request No Yes joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 161126591 437999 11 2 31 13 0.0 Metagenome 3300042068 *Microbiome Permanent Draft Forest and sugarcane field soil microbial communities from Santa Rita do Passa , Quatro, Sao Paulo, Brazil Soil microbial communities from forest in Santa Rita do Passa , Quatro, Sao Paulo, Brazil - FOR-W_2 UNESP-FCAV 3300042068 Metagenome Analysis Custom JGI assembly. Yes Yes No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -21.708519 -47.582469 24498822 49785 23 0 45 0 SRX9176015 0.0 Metagenome 3300071149 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone National Park, Wyoming, USA - YELL_046-M-20200709-COMP-DNA1 3300071149 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 17327018 53936 101 8 181 13 0.0 Metagenome 3300048987 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_21BS DOE Joint Genome Institute (JGI) 3300048987 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.3689 -106.1051 421847680 655268 262 19 475 24 SRX20649987 Unrestricted 0.0 Metagenome 3300012921 *Microbiome Permanent Draft Genome sequencing of Microcoleus cyanobacteria isolates from Utah, USA Contaminated culture microbial community from soil near Moab, Utah, USA - Microcoleus steenstrupii SON62 (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300012921 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Soil crust Soil Unclassified Contaminated culture 38.5733 -109.5498 347988676 501294 1082 0 2119 0 Unrestricted 0.0 Metagenome 3300003826 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH29Jul08 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003826 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 70970730 167468 154 39 254 81 SRX2565941 Unrestricted 0.0 Metagenome 3300002917 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm DOE Joint Genome Institute (JGI) 3300002917 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 757346763 1678570 746 75 1300 138 SRX2563719 Unrestricted 0.0 Metagenome 3300037524 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Sediment microbial communities from wetlands near Prado wetlands, California, USA - CSM_Prado_Oct18_PM_1.5z2 DOE Joint Genome Institute (JGI) 3300037524 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 2352917100 3667736 642 29 932 53 SRX9164575 Unrestricted 18.6 Metagenome 3300026993 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom. Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel4S_1600h metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026993 Metagenome Analysis spades v. 3.11.1 Yes Yes rmmckay@bgsu.edu Robert M. McKay No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.69957 -83.2941 80400598 209989 104 16 146 43 Unrestricted 0.0 Metagenome 3300014543 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 511_12M Beijing Genomics Institute (BGI) 3300014543 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 119527371 143056 66 0 87 0 ERX491159 0.0 Metagenome 3300032332 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 17-093 Genome Quebec 3300032332 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.689327 -70.919835 579608690 1200462 328 99 511 199 0.0 Metagenome 3300011006 *Microbiome Permanent Draft Rumen microbial communities from healthy moose, Palmer, Alaska Rumen fluid microbial communities from healthy moose, Palmer, Alaska - F08 Ohio State University 3300011006 Metagenome Analysis IDBA-UD released by Lindsey Solden No Yes solden.2@osu.edu Lindsey Solden Yes 30356154 Host-associated Mammals Stomach Digestive system Rumen Moose rumen 61.5997 -148.1128 366007113 514556 408 26 492 32 0.0 Metagenome 3300035334 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada -18E_2c_23_5 mgh University of Alberta 3300035334 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified wastewater 56.7292 -111.3885 25900667 32789 12 0 15 0 0.0 Metagenome 3300013536 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - sediment SCG81 University of British Columbia 3300013536 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Sediment Marine 155795 531 0 0 0 0 SRX143190 0.0 Metagenome 2199352025 *Microbiome Permanent Draft Soil microbial communities from Rothamsted, UK, for project Deep Soil Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL Argonne National Laboratory 2199352025 Metagenome Analysis CLC bioworkbench released per JGI data release policy No Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Soil 56.03 -2.82 168842255 344594 0 0 0 0 0.0 Metagenome 3300009507 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 DOE Joint Genome Institute (JGI) 3300009507 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 27054497, 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 1292808754 2497285 980 226 1467 365 SRX2999992 Unrestricted 0.0 Metagenome 7000000388 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160765029 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000388 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 85682741 151862 0 0 0 0 0.0 Metagenome 3300033755 *Microbiome Permanent Draft Lab enriched peat soil microbial communities from two peatlands near Ithaca, NY, United States Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fraction DOE Joint Genome Institute (JGI) 3300033755 Metagenome Analysis spades v. 3.13.0 Yes Yes rer26@cornell.edu Ruth Richardson No Environmental Terrestrial Wetlands Soil Peat peat soil 42.5488 -76.2662 1225506441 2200790 375 5 606 4 SRX7543032 Unrestricted 16.05 Metagenome 3300008085 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-02 DOE Joint Genome Institute (JGI) 3300008085 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 979198297 1686792 906 35 1447 67 SRX3197864 Unrestricted 0.0 Metagenome 2061766007 *Microbiome Permanent Draft Switchgrass-associated bovine rumen microbial communities from Urbana, Illinois, USA Bovine rumen microbial communities fromthe University of Illinois at Urbana-Champaign, USA, that are switchgrass associated - Sample 470 DOE Joint Genome Institute (JGI) 2061766007 Metagenome Analysis Sczyrba Pipeline No Yes mhess@lbl.gov, mhess@ucdavis.edu Matthias Hess Yes 21273488 Host-associated Mammals Stomach Digestive system Rumen Bovine rumen 40.096 -88.2315 1929671258 2744143 274 0 232 0 0.0 Metagenome 3300003263 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_48_BLW_10 DOE Joint Genome Institute (JGI) 3300003263 Metagenome Analysis Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 72128935 173287 149 6 287 15 SRX2572619 Unrestricted 0.0 Metagenome 3300036970 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - SCT 57 I DOE Joint Genome Institute (JGI) 3300036970 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 1097884681 2252384 846 130 1329 230 SRX8377726 Unrestricted 8.54 Metagenome 3300040487 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, Pacific Southwest, CA, USA - SJER_025-M-20170315-COMP-DNA1 Battelle Memorial Institute 3300040487 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.10878 -119.73228 3773735 12460 72 8 131 11 0.0 Metagenome 3300048049 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - N.F.S.T0 (version 2) DOE Joint Genome Institute (JGI) 3300048049 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3533 19.0466 218333791 440835 285 5 488 6 Restricted 0.0 Metagenome 2003000006 *Microbiome Permanent Draft Air microbial communities from Singapore Singapore Air Sample 1 DOE Joint Genome Institute (JGI) 2003000006 Metagenome Analysis No Yes ruanyj@gis.a-star.edu.sg Yijun Ruan Yes 18382653 Environmental Air Unclassified Indoor Air Unclassified Air 1.288477 103.846756 7 35449373 46894 37 0 50 0 0.0 Metagenome 3300045136 *Microbiome Permanent Draft Microbial mat bacterial communities from hot springs in Waikite Valley, Taupo Volcanic Zone, New Zealand Microbial mat bacterial communities from hot spring in Waikite Valley, New Zealand - LMW_ETR_NZ_2018_Waikite_6_2a DOE Joint Genome Institute (JGI) 3300045136 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes LMWARD@post.harvard.edu Lewis Ward No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats microbial mat -38.3276 176.3016 966732214 1275391 430 7 574 13 Unrestricted 36.3 Metagenome 3300040608 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_045-M-20160809-COMP-DNA1 Battelle Memorial Institute 3300040608 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 1639225 5953 10 1 27 0 0.0 Metagenome 3300000593 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 30APR2008 epilimnion DOE Joint Genome Institute (JGI) 3300000593 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300009116 *Microbiome Permanent Draft Microbial communities in swimming pool backwashes Microbial communities from sand-filter backwash in Singapore swimming pools - WL-2 Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300009116 Metagenome Analysis megahit released per JGI data release policy Yes Yes martintayqx@gmail.com Martin Tay No Engineered Built environment Unclassified Unclassified Unclassified Swimming pool sandfilter backwash 1.28967 103.85007 41523028 87866 60 31 82 43 0.0 Metagenome 3300041423 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass leaf microbial community from Lincoln, Canterbury, New Zealand - RGL17_3 MetaG AgResearch, New Zealand, Mosgeil 3300041423 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 311601731 515345 102 362 240 256 0.0 Metagenome 3300048897 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Soil microbial communities from greenhouse in W.K. Kellogg Biological Station, Michigan, USA - KLW soil_4a N15 DOE Joint Genome Institute (JGI) 3300048897 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Environmental Terrestrial Unclassified Soil Unclassified Soil 42.40581 -85.40228 1566551828 2567680 592 14 952 23 Unrestricted 13.29 Metagenome 3300004207 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 22_HOW5 DOE Joint Genome Institute (JGI) 3300004207 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 111111594 298826 88 9 156 21 SRX2720159 Unrestricted 0.0 Metagenome 3300025481 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 210-2 deep-092012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025481 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 253551218 469381 108 0 161 3 SRX1987665 Unrestricted 0.0 Metagenome 3300025998 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_204 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025998 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 59497292 163569 156 2 258 7 SRX2564776, SRX2581054 Unrestricted 0.0 Metagenome 3300037103 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 S-3-X DOE Joint Genome Institute (JGI) 3300037103 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0475 509089875 861830 149 6 230 8 SRX8160342 Unrestricted 21.88 Metagenome 3300036674 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 E-3-M DOE Joint Genome Institute (JGI) 3300036674 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0467 260474386 644805 337 11 615 14 SRX8161062 Unrestricted 6.12 Metagenome 3300038330 *Microbiome Permanent Draft Acid mine drainage microbial communities from coal mines in Pennsylvania and Ohio, United States Garden soil microbial communities from Akron, Ohio, USA - VSG_soil DOE Joint Genome Institute (JGI) 3300038330 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shagun2260@gmail.com Shagun sharma No Environmental Terrestrial Garden Soil Unclassified garden soil 41.110469 -81.563467 1094769959 3020381 819 18 1472 31 SRX9404282 Unrestricted 6.98 Metagenome 3300029893 *Microbiome Permanent Draft Fracture fluid microbial communities from borehole on the 26 level of Beatrix Gold Mine, Welkom, South Africa Fracture fluid microbial communities from borehole on the 26 level of Beatrix Gold Mine, Welkom, South Africa - Be326_2012_MF Princeton University 3300029893 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Terrestrial Fracking water Deep subsurface Unclassified Fracture fluid -28.232288 26.794365 178112486 295121 165 1 239 0 0.0 Metagenome 3300011937 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00490 Weill Cornell Medical College 3300011937 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.83 -73.88 18904118 29294 6 0 22 0 SRX822459 0.0 Metagenome 3300045801 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - S1-R2-A DOE Joint Genome Institute (JGI) 3300045801 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3555 19.0475 323620038 737353 240 65 364 91 Unrestricted 6.5 Metagenome 3300020681 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 21JUL2009 hypolimnion DOE Joint Genome Institute (JGI) 3300020681 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu; rrmalmstrom@lbl.gov Katherine McMahon; Rex Malmstrom Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 49622392 97368 64 15 82 27 Unrestricted 0.0 Metagenome 3300005105 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgHPC DOE Joint Genome Institute (JGI) 3300005105 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 171096346 613160 315 8 715 23 SRX2521234 Unrestricted 0.0 Metagenome 3300037311 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from California, United States - Warm Spring A (WSA_S1) DOE Joint Genome Institute (JGI) 3300037311 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified Desert spring 37.2656 -118.2713 7.62 1521003699 1812417 525 64 673 85 SRX9470708 Unrestricted 34.13 Metagenome 3300046322 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_86 DOE Joint Genome Institute (JGI) 3300046322 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9703 -106.997 25272372 57199 96 47 201 98 Restricted 0.0 Metagenome 3300033568 *Microbiome Permanent Draft Columbia Riverbed POM Degredation Experiment Lab enriched sediment microbial communities from the Columbia River near Richland, WA, USA - CRF-POM N2 University of Wisconsin, Madison 3300033568 Metagenome Analysis Metaspades v. 3.13.0 released by JGI data releasing policy Yes Yes nstern2@wisc.edu Noah Stern No Environmental Aquatic Sediment Freshwater Unclassified Sediment 46.28045 -119.27368 991042337 2087454 420 17 596 21 0.0 Metagenome 3300026883 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_10-June-14 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026883 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 61414965 156152 140 49 275 103 SRX2838983 Unrestricted 0.0 Metagenome 3300018054 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1 DOE Joint Genome Institute (JGI) 3300018054 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 .3 625928749 1431786 643 9 1268 14 SRX3939421 Unrestricted 5.37 Metagenome 3300033515 *Microbiome Permanent Draft Sinkhole microbial mat communities from Lake Huron, Michigan, USA Sinkhole microbial mat communities from Lake Huron, Michigan, USA - SG0662 University of Michigan 3300033515 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy Yes Yes sgrim01@gmail.com Sharon Grim No Environmental Aquatic Sinkhole Freshwater Unclassified microbial mat 45.19843 -83.32721 46118018 54628 37 11 43 18 0.0 Metagenome 3300000119 *Microbiome Draft Marine microbial communities from chronically polluted sediments in four geographic locations Marine microbial communities from chronically polluted sediments in Antarctica -King George Island site S1 sample ANT 01_9.5m DOE Joint Genome Institute (JGI) 3300000119 Metagenome Analysis released based on JGI ITS Yes Yes hdionisi@cenpat.edu.ar Hebe Dionisi No Environmental Aquatic Intertidal zone Marine Sediment Marine -62.230512 -58.656117 482644959 1118384 658 76 1067 105 Unrestricted 0.0 Metagenome 3300014911 *Microbiome Permanent Draft Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay16, Core 4569-2, 12-15 cm DOE Joint Genome Institute (JGI) 3300014911 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nd.microbiota@gmail.com Nina Dombrowski Yes 30479325 Environmental Aquatic Hydrothermal vents Marine Sediment marine sediment 27.0154 -111.3798 1221258089 2497110 1077 11 1855 9 SRX3779979 Unrestricted 24.05 Metagenome 3300027780 *Microbiome Permanent Draft Marine microbial communities from western Arctic Ocean Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027780 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh Yes 30271971 Environmental Aquatic Oceanic Marine Unclassified Marine 79.2466 -150.0613 940683906 1807057 312 153 478 244 SRX2997664 Unrestricted 0.0 Metagenome 3300069342 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_001-M-20170626-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069342 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 33149276 96723 92 5 205 4 0.0 Metagenome 3300046403 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA089-TGU DOE Joint Genome Institute (JGI) 3300046403 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6772 -83.4783 555700178 1382532 312 40 608 55 Unrestricted 8.57 Metagenome 3300037277 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_C3 DOE Joint Genome Institute (JGI) 3300037277 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 285657749 836236 517 40 881 60 SRX8397633 Unrestricted 5.11 Metagenome 3300004173 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 16_LOW5 DOE Joint Genome Institute (JGI) 3300004173 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 194363253 495563 113 0 190 0 SRX2720155 Unrestricted 0.0 Metagenome 3300033172 *Microbiome Permanent Draft Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_3_08-R1 DOE Joint Genome Institute (JGI) 3300033172 Metagenome Analysis spades v. 3.13.0 Yes Yes ziels@mail.ubc.ca Ryan Ziels Yes 35477253 Engineered Bioreactor Unclassified Anaerobic Unclassified sludge 51.9691 5.6654 523310550 804798 446 0 626 0 SRX7542612 Unrestricted 39.15 Metagenome 3300031728 *Microbiome Permanent Draft Rhizosphere microbial communities from salt marsh grasses in Alabama, United States Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC DOE Joint Genome Institute (JGI) 3300031728 Metagenome Analysis spades v. 3.12.0 Yes Yes omason@fsu.edu Olivia Mason No Host-associated Plants Rhizosphere Roots Unclassified rhizosphere 30.2619 -88.2383 1722034352 3882935 1213 26 2020 45 SRX5821833 Unrestricted 8.49 Metagenome 3300021368 *Microbiome Permanent Draft Coastal seawater microbial communities from Pivers Island, North Carolina, United States Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550 DOE Joint Genome Institute (JGI) 3300021368 Metagenome Analysis spades v. 3.11.1-check Yes Yes dana.hunt@duke.edu Dana Hunt No Environmental Aquatic Coastal Marine Unclassified seawater 34.7181 -76.6707 954920912 2208134 672 275 1034 445 SRX4010391 Unrestricted 14.58 Metagenome 3300069613 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_004-M-20160721-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069613 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 9018865 32108 37 3 51 5 0.0 Metagenome 3300020723 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 23JUN2009 hypolimnion DOE Joint Genome Institute (JGI) 3300020723 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu; rrmalmstrom@lbl.gov Katherine McMahon; Rex Malmstrom Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 135276742 257432 101 14 157 14 Unrestricted 0.0 Metagenome 3300030363 *Microbiome Permanent Draft Seawater microbial communities from the Baltic Proper 10 km east of Oland, Sweden Seawater microbial communities from the Baltic Proper 10 km east of Oland, Sweden - LMO_120314 Royal Institute of Technology 3300030363 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes Yes 26667648 Environmental Aquatic Unclassified Marine Unclassified Seawater 56.93085 17.060667 36199307 82227 47 9 62 22 SRX1050741 0.0 Metagenome 3300044987 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater bacterial communities from Lake Mendota, Wisconsin, United States - ME_2020-08-25_23.5m_Bacteria_A DOE Joint Genome Institute (JGI) 3300044987 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 1019333208 1538619 433 18 600 20 Unrestricted 15.17 Metagenome 3300001483 *Microbiome Permanent Draft Sheep rumen microbial communities from New Zealand from high and low methane emitting sheep Sheep rumen microbial communities from New Zealand - Rank05_low DOE Joint Genome Institute (JGI) 3300001483 Metagenome Analysis Velvet Released because these are assemblies from SRA data No Yes janine.kamke@agresearch.co.nz, janine.kamke@uni-wuerzburg.de Janine Kamke No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen -40.352 175.608 416101257 875982 686 40 1012 64 0.0 Metagenome 3300034152 *Microbiome Permanent Draft Hypersaline lacustrine bacterial communities from Kiritimati Island Lacustrine bacterial communities from hypersaline Lake 1, Kiritimati Island, Kiribati - 5-22.5 cm University of Illinois, Urbana-Champaign 3300034152 Metagenome Analysis MEGAHIT v. 1.1.1 released by Mingfei Chen No Yes mingfeichen2@gmail.com Mingfei Chen No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Sediment lacustrine 1.9 -157.4 1563794018 3128088 592 10 1328 12 0.0 Metagenome 3300009974 *Microbiome Permanent Draft Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions Switchgrass associated microbial communities from Austin, Texas, USA - LS_119 metaG DOE Joint Genome Institute (JGI) 3300009974 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes esinger@lbl.gov; twoyke@lbl.gov Esther Singer; Tanja Woyke No Host-associated Plants Phylloplane/Leaf Phyllosphere Endophytes Switchgrass associated 30.387 -97.7301 26347670 52334 35 1 75 1 SRX3197608 Unrestricted 0.0 Metagenome 3300055495 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.1W.9 SIP fraction DOE Joint Genome Institute (JGI) 3300055495 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 215597328 401238 210 22 335 35 Unrestricted 12.06 Metagenome 3300029350 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 063_3_11_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029350 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 170328671 231644 206 0 271 0 0.0 Metagenome 3300012195 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00627 Weill Cornell Medical College 3300012195 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.83 -73.93 27779190 48022 28 0 45 0 SRX822594 0.0 Metagenome 3300044969 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - LOSP7-9-5-19 DOE Joint Genome Institute (JGI) 3300044969 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.1411 -120.7075 570533579 1358996 570 42 955 50 Restricted 7.44 Metagenome 3300033626 *Microbiome Permanent Draft Metagenomic SGS 2x251 Cornfield soil microbial communities from Madison, WI, USA - CF10 Illumina 3300033626 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Agricultural land Soil 43.056543 -89.477477 454512176 1700457 251 11 515 20 0.0 Metagenome 3300017634 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - W11-06 University of Michigan 3300017634 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.39757 -85.38536 22509832 27045 8 4 14 3 0.0 Metagenome 3300038775 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog67 BILS 3300038775 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 4497073 10779 5 0 9 0 ERX1594889 0.0 Metagenome 3300039178 *Microbiome Finished Marine algae associated bacterial community from Sydney, Australia Marine algae associated bacterial community from Sydney, Australia - Ulva australis_CR2 Ramaciotti Centre for Genomics 3300039178 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes j.nappi@unsw.edu.au Jadranka Nappi No Host-associated Algae Unclassified Unclassified Unclassified Marine -33.990304 151.231529 499061481 687729 87 6 188 15 0.0 Metagenome 3300070598 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_070-M-20190618-COMP-DNA1 Battelle Memorial Institute 3300070598 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 45.824185 -121.955555 5.06-5.24 23722364 72975 42 12 87 16 0.0 Metagenome 3300028000 *Microbiome Permanent Draft Soil microbial communities from hillslopes of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 2-4-E_D DOE Joint Genome Institute (JGI) 3300028000 Metagenome Analysis spades v. 3.11.1 Yes Yes laurameredith@email.arizona.edu Laura Meredith No Engineered Artificial ecosystem Soil Mesocosm Unclassified soil 32.5788 -110.8509 10732935 31433 19 0 45 0 SRX5245791 Unrestricted 315.53 Metagenome 3300034281 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_03D_15 DOE Joint Genome Institute (JGI) 3300034281 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9141 -147.8344 794152826 1955668 721 19 1231 24 SRX7633784 Unrestricted 6.3 Metagenome 3300019733 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLC_9-10_MG DOE Joint Genome Institute (JGI) 3300019733 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 122848789 304274 245 32 453 53 SRX3983547 Unrestricted 3.69 Metagenome 3300003398 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co AM DOE Joint Genome Institute (JGI) 3300003398 Metagenome Analysis revert back to private per Christa Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 11798878 33219 143 6 233 8 SRX2573788 Unrestricted 0.0 Metagenome 3300004085 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus exumae BAHAMAS.1 (version 2) DOE Joint Genome Institute (JGI) 3300004085 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 507937867 1029194 25 12 45 23 SRX3339705, SRX3339706 Unrestricted 0.0 Metagenome 3300056877 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E1P_9_10 DOE Joint Genome Institute (JGI) 3300056877 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.996961 -81.487381 2025509244 3019708 716 3 1163 4 Unrestricted 14.71 Metagenome 3300032260 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Coastal sediment microbial communities from Maine, United States - Merrow Island worm burrow DOE Joint Genome Institute (JGI) 3300032260 Metagenome Analysis spades v. 3.13.0 Yes Yes jbeam@bigelow.org; demerson@bigelow.org Jake Beam; David Emerson No Environmental Aquatic Coastal Marine Sediment worm burrow 43.8826 -69.6616 2465085136 5630842 1605 40 2858 75 SRX5822353 Unrestricted 8.64 Metagenome 3300044897 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T28 D DOE Joint Genome Institute (JGI) 3300044897 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7258 -64.1908 24668131 79680 11 0 17 2 Unrestricted 83.93 Metagenome 3300071125 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_002-O-20170802-COMP-DNA1 3300071125 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 33812542 105160 127 2 202 2 0.0 Metagenome 3300040090 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 026_R1_022417 University of Maryland 3300040090 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.22338333 25.02272222 12690648 26086 26 2 37 2 0.0 Metagenome 3300035703 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from deep shales in Oklahoma, United States - K-1-A DOE Joint Genome Institute (JGI) 3300035703 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back fracking water 35.812 -98.262 2415333201 4335073 995 269 1387 386 SRX8135668 Unrestricted 23.73 Metagenome 3300035095 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - T1-7 Autonomous University of Barcelona 3300035095 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 96826887 401477 800 1 1568 0 0.0 Metagenome 3300025004 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-07 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025004 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 347900874 645151 324 31 512 33 SRX3197919 Unrestricted 0.0 Metagenome 3300005291 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - site 1 Avi (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300005291 Metagenome Analysis HGAP3 v. smrtanalysis-2.2.0.133377 Released by Nikos bc they passed the 6 months embargo date Yes Yes rmkelly@ncsu.edu Robert Kelly Yes 29475869 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6102 -110.4387 6582149 6769 10 0 10 0 SRX3317568, SRX7118881, SRX7118892, SRX7118880, SRX7118891, SRX7118890, SRX7118896, SRX7118885, SRX7118895, SRX7118884, SRX7118883, SRX7118894, SRX7118893, SRX7118882, SRX7118889, SRX7118888, SRX7118887, SRX7118886, SRX7118897 Unrestricted 0.0 Metagenome 3300017930 *Microbiome Permanent Draft Coastal wetland sediment microbial communities from the Mid-Atlantic and Southeast Atlantic Coast of USA, responding to salinity intrusion. Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5 DOE Joint Genome Institute (JGI) 3300017930 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Freshwater sediment 35.9061 -76.1569 678155232 1524471 645 11 1115 17 SRX4369888 Unrestricted 4.77 Metagenome 7000000206 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 765337473 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000206 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 194893 447 0 0 0 0 SRX024872 0.0 Metagenome 3300010411 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Aquatic microbial communities from North Sea petroleum storage tank - Cell3b Shell Corporation 3300010411 Metagenome Analysis idba-ud released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com; avignero@gmail.com Nicolas Tsesmetzis; Adrien Vigneron No Environmental Aquatic Unclassified Unclassified Unclassified aquatic 60.9 1.8 564930946 1932141 1907 4 2573 18 0.0 Metagenome 3300040774 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Etang de Berre, Marignane, France - D26 Genopole Toulouse Midi-Pyrenees 3300040774 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.4847 5.188 177978546 354511 179 17 331 37 0.0 Metagenome 3300029132 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019854-111 Beijing Genomics Institute (BGI) 3300029132 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 171398055 214394 104 0 182 0 0.0 Metagenome 3300022464 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1OPP3 JM54 AGRF 3300022464 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 123821300 213719 84 0 134 0 0.0 Metagenome 3300050242 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Leeds, Wisconsin, USA - 128_771_WI_T0_1m_DR_c2_T0_16O DOE Joint Genome Institute (JGI) 3300050242 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 43.30485 -89.3309 1290650848 2004921 400 12 661 21 Restricted 12.49 Metagenome 3300031329 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #90 DOE Joint Genome Institute (JGI) 3300031329 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.457 78.1911 294181016 493237 149 34 191 53 SRX5649322 Unrestricted 44.1 Metagenome 3300025462 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025462 Metagenome Analysis spades v. 3.11.1 Yes Yes binskeep@montana.edu; jim.fredrickson@pnnl.gov William P. Inskeep; Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.376 -110.69 189101311 435914 109 3 142 6 SRX2553562 Unrestricted 0.0 Metagenome 3300005627 *Microbiome Draft Crenothrix polyspora biofilm communities from Wolfenbuettel waterworks, Germany Crenothrix polyspora biofilm communities from Wolfenbuettel waterworks, Germany DOE Joint Genome Institute (JGI) 3300005627 Metagenome Analysis LUCY, PGA Assembler released based on JGI ITS No Yes wagner@microbial-ecology.net Michael Wagner No Environmental Aquatic Drinking water Freshwater Unclassified Crenothrix polyspora 52.149 10.542 24508778 47698 8 2 21 5 Unrestricted 0.0 Metagenome 3300007939 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human Mid vagina microbial communities from NIH, USA - visit 1, subject 763577454 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007939 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Midpoint, Midpoint vagina Human 39.0042816 -77.1012173 3933098 5786 6 0 6 0 0.0 Metagenome 3300015611 *Microbiome Permanent Draft Permafrost microbial communities from CRREL Tunnel near Fairbanks, Alaska Permafrost microbial communities from CRREL Tunnel near Fairbanks, Alaska - 25K California State University 3300015611 Metagenome Analysis idba_ud released by JGI data releasing policy No Yes rachel.mackelprang@csun.edu Rachel Mackelprang No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 64.951 -147.621 239789037 285721 58 0 45 1 0.0 Metagenome 3300006874 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA DOE Joint Genome Institute (JGI) 3300006874 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 972153657 2556008 726 236 1176 417 SRX2858576 Unrestricted 0.0 Metagenome 3300048025 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_190327.NP1 DOE Joint Genome Institute (JGI) 3300048025 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 750783663 1619486 435 52 659 107 Unrestricted 16.56 Metagenome 3300023545 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_198C University of California, Irvine 3300023545 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 147124362 148183 19 0 25 0 0.0 Metagenome 3300025180 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP1374 (SPAdes) DOE Joint Genome Institute (JGI) 3300025180 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -39.23 135.19 81816124 152253 82 5 126 6 SRX1982559 Unrestricted 0.0 Metagenome 3300003799 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE09Aug07 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003799 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 2371654 7370 12 8 26 21 SRX2565229 Unrestricted 0.0 Metagenome 3300036591 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Ripple Lake #18 DOE Joint Genome Institute (JGI) 3300036591 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5833 78.0331 244235176 457637 93 42 117 77 SRX8865210 Unrestricted 41.04 Metagenome 3300000427 *Microbiome Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine microbial community from Union City, CA, USA - Pond 1C Liquid 2 DOE Joint Genome Institute (JGI) 3300000427 Metagenome Analysis released based on JGI ITS Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Salt pond 37.5693 -122.102517 65780205 180395 179 6 328 18 Unrestricted 0.0 Metagenome 3300070701 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_005-M-20180717-COMP-DNA1 3300070701 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 83584434 240182 112 7 227 9 0.0 Metagenome 3300007705 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 160158126 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007705 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 81701648 90672 47 0 52 0 0.0 Metagenome 3300027341 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius ullae BAHAMAS.1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027341 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 324469794 492298 3 1 1 3 SRX3340610 Unrestricted 0.0 Metagenome 3300013790 *Microbiome Permanent Draft Wastewater microbial communities from municipal sewage treatment plants in Nanjing, China Wastewater microbial communities from municipal sewage treatment plant in Nanjing, China - DC_AS_meta Nanjing University 3300013790 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 50769435 147271 26 4 92 9 SRX425457 0.0 Metagenome 3300014054 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A34_5cm_12M University of Tennessee 3300014054 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 305997452 969686 136 11 306 16 SRX710603 0.0 Metagenome 3300007093 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763820215 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007093 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 103719426 181349 102 0 116 0 0.0 Metagenome 3300009670 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC078_MetaG DOE Joint Genome Institute (JGI) 3300009670 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 42.35 -70.96 874760261 1454765 1039 5 1536 1 SRX2338984 Unrestricted 0.0 Metagenome 3300029059 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 338_M Beijing Genomics Institute (BGI) 3300029059 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 181987908 231030 138 1 229 0 ERX491090 0.0 Metagenome 3300045177 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_3_E DOE Joint Genome Institute (JGI) 3300045177 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 176088950 219659 96 2 137 3 Unrestricted 94.07 Metagenome 3300014557 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 51_12M Beijing Genomics Institute (BGI) 3300014557 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 128475507 167621 78 0 103 0 ERX491160 0.0 Metagenome 3300041770 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_15 MetaG AgResearch, New Zealand, Mosgeil 3300041770 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1530069608 3153611 325 35 1236 62 0.0 Metagenome 3300020588 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Lodgepole_Yose_1 DOE Joint Genome Institute (JGI) 3300020588 Metagenome Analysis spades v. 3.10.1 Yes Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.6622 -119.6197 432157140 899802 20 95 24 110 SRX4002427 Unrestricted 39.66 Metagenome 3300040798 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Etang de Berre, Marignane, France - D304L2 Genopole Toulouse Midi-Pyrenees 3300040798 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.4847 5.188 139224452 236375 89 4 158 11 0.0 Metagenome 3300057119 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - LE-24-2 DOE Joint Genome Institute (JGI) 3300057119 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.703 -83.254 522184312 1272192 838 13 1732 29 Unrestricted 9.65 Metagenome 3300009888 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA5 University of New South Wales 3300009888 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 45882897 63819 31 1 34 3 0.0 Metagenome 3300002711 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A4-10 DOE Joint Genome Institute (JGI) 3300002711 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 194208 670 24 0 40 0 SRX1991113 Unrestricted 0.0 Metagenome 3300013577 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100699 University of Pennsylvania 3300013577 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3959726 5742 7 3 21 6 SRX756151 0.0 Metagenome 3300005983 *Microbiome Permanent Draft Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 DOE Joint Genome Institute (JGI) 3300005983 Metagenome Analysis SPADES v3.5.0 Released upon Christa's approval Yes Yes nnivanova@lbl.gov, NNIvanova@lbl.gov; filipagodoyvitorino@gmail.com; fgodoyvitorino@gmail.com Natasha Ivanova, Natalia Ivanova; Filipa Godoy-Vitorino; Filipa Godoy Vitorino No Host-associated Plants Rhizosphere Roots Unclassified Tabebuia heterophylla rhizosphere 18.402889 -66.050054 766649351 1510616 617 78 1263 120 SRX2562385 0.0 Metagenome 2022920021 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP17 Obsidian Pool Prime v2 (version 2) DOE Joint Genome Institute (JGI) 2022920021 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23761787 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.733519 -110.404033 5.7 18742162 31932 186 0 35 0 Unrestricted 0.0 Metagenome 3300011857 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00365 Weill Cornell Medical College 3300011857 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.64 -74.07 39152020 70031 26 0 33 2 SRX822336 0.0 Metagenome 3300043255 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_500m_C5_0cm2cm (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043255 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 37.0366 -121.2986 456471693 735749 167 1 287 4 SRX9141055 Unrestricted 48.65 Metagenome 7000000133 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 158337416 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000133 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 1998132 3717 0 0 0 0 0.0 Metagenome 3300028591 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 DNA GHGhigh gp2 DOE Joint Genome Institute (JGI) 3300028591 Metagenome Analysis spades v. 3.11.1 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -40.3794 175.6106 3866467842 7579643 3567 62 5396 75 SRX5244081 Unrestricted 14.99 Metagenome 3300044762 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_9 DOE Joint Genome Institute (JGI) 3300044762 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 970244610 2323692 692 16 1318 25 Unrestricted 8.57 Metagenome 3300013098 *Microbiome Permanent Draft Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay11, Core 4567-28, 0-3 cm DOE Joint Genome Institute (JGI) 3300013098 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nd.microbiota@gmail.com Nina Dombrowski Yes 30479325 Environmental Aquatic Hydrothermal vents Marine Sediment marine sediment 27.009 -111.4081 1259078910 2867622 1031 27 2041 69 SRX3568919 Unrestricted 5.09 Metagenome 3300003882 *Microbiome Permanent Draft Plastic marine debris microbial communities from the Atlantic Ocean Plastic marine debris microbial communities from the Atlantic Ocean - SEA_0108_20120607_metagen Marine Biological Laboratory 3300003882 Metagenome Analysis CLC workbench 7 released per JGI data release policy No Yes amaral@mbl.edu Linda Amaral-Zettler No Environmental Aquatic Oceanic Marine Unclassified marine 35.55167 -65.65833 227447075 545631 110 27 191 88 0.0 Metagenome 3300042613 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Jugositermes tuberculatus from Ebogo II, Mbalmayo, Cameroon - Jx357 Eurofins MWG Operon 3300042613 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 3.381958 11.463214 855237099 904321 161 24 252 25 0.0 Metagenome 3300044275 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - DOSP6-9-6-19 DOE Joint Genome Institute (JGI) 3300044275 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.098 -120.7172 419335645 1003349 470 28 757 47 Restricted 9.54 Metagenome 3300020056 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101410AT metaG (spades assembly) DOE Joint Genome Institute (JGI) 3300020056 Metagenome Analysis spades v. 3.10.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1407155145 2681221 607 108 941 164 SRX3919528 Unrestricted 21.21 Metagenome 3300006898 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160400887 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006898 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 43150982 94263 37 0 62 0 0.0 Metagenome 3300025507 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_8_40 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025507 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 297656245 555234 126 3 191 2 SRX3002152 Unrestricted 0.0 Metagenome 3300009481 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG DOE Joint Genome Institute (JGI) 3300009481 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes eaeloefadrosh@lbl.gov, EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Volcanic Marine Unclassified Deep subsurface 36.5264 25.4868 1403743140 2730676 998 93 1607 177 SRX2524452 Unrestricted 0.0 Metagenome 3300001288 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - Naphthalene biodegradation metagenome 12C8dose DOE Joint Genome Institute (JGI) 3300001288 Metagenome Analysis No Yes elm3@cornell.edu Eugene Madsen Yes 30051558 Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.292222 -73.604444 17365134 36474 87 2 82 10 Unrestricted 0.0 Metagenome 3300049575 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 DOE Joint Genome Institute (JGI) 3300049575 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.40849 -82.168434 1720579190 2849589 652 23 1121 35 Unrestricted 15.07 Metagenome 3300009998 *Microbiome Finished Microbiology of confined controlled built environments Gowning area floor microbial communities from spacecraft assembly cleanroom facility in Turin, Italy - gowning room UR Eurofins MWG Operon 3300009998 Metagenome Analysis Ray Meta released per JGI data release policy No Yes alexander.mahnert@gmail.com Alexander Mahnert No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor built environment 45.079675 7.608334 65333567 75231 14 2 20 3 0.0 Metagenome 3300056642 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.17C.14 SIP fraction DOE Joint Genome Institute (JGI) 3300056642 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 297063695 555797 160 66 278 96 Unrestricted 11.71 Metagenome 3300046386 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_22 DOE Joint Genome Institute (JGI) 3300046386 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9802 -106.9905 345196050 975749 1089 232 2067 354 Restricted 0.0 Metagenome 3300034039 *Microbiome Permanent Draft Deception Metagenome Fumarole sediment microbial communities from Whalers Bay, Deception Island, Antarctica - WBA3 The Brazilian National Council for Scientific and Technological Development (CNPq) 3300034039 Metagenome Analysis IDBA-ud v. 1.1.1 released per Amanda Bendia -- GOLD-1013 No Yes amandagbendia@gmail.com Amanda Bendia No Environmental Aquatic Volcanic Marine Unclassified fumarole sediment -63.18 -60.67 68447621 86777 34 1 69 2 0.0 Metagenome 3300014717 *Microbiome Permanent Draft Human bile duct microbial communities from gallstone patients in Hangzhou, China Human bile duct microbial communities from gallstone patients in Hangzhou, China - C4_bile Beijing Institution of Radiation Medicine 3300014717 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Biliary tract Digestive system Bile ducts: Bile Human bile duct 3888001 6860 0 6 0 1 SRX957041, SRX957028 0.0 Metagenome 3300005893 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_202 DOE Joint Genome Institute (JGI) 3300005893 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 295883567 1005278 484 19 875 29 SRX2564569, SRX2581037 Unrestricted 0.0 Metagenome 3300021962 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D DOE Joint Genome Institute (JGI) 3300021962 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Unclassified Marine Unclassified Estuarine water 38.06 -121.8 1679442907 3555392 721 122 1053 158 SRX4051813 Unrestricted 14.76 Metagenome 3300025116 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from South Africa to study Microbial Dark Matter (Phase II) - Sagole hot spring metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025116 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring -22.5304 30.6814 354346899 784839 377 36 572 78 SRX2525296 Unrestricted 0.0 Metagenome 3300040501 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from LBJ National Grassland , Southern Plains, TX, USA - CLBJ_031-M-20170412-COMP-DNA1 Battelle Memorial Institute 3300040501 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 33.40123 -97.57 3474770 11244 30 2 54 9 0.0 Metagenome 3300044623 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME09Feb2014D0-rr0986 DOE Joint Genome Institute (JGI) 3300044623 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 923943772 1398727 226 49 293 70 Unrestricted 18.13 Metagenome 3300002551 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-211 DOE Joint Genome Institute (JGI) 3300002551 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.290565 -156.788622 167693799 373251 198 1 277 3 SRX1990909 Unrestricted 0.0 Metagenome 3300007732 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit number 3 of subject 158883629 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007732 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 99017043 123188 81 0 85 0 0.0 Metagenome 3300040399 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 065_R1_022417 University of Maryland 3300040399 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.51557 18.97242 5396275 11346 17 2 26 5 0.0 Metagenome 3300033809 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Loreto, Peru - SR_D DOE Joint Genome Institute (JGI) 3300033809 Metagenome Analysis spades v. 3.13.0 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Unclassified peatland -4.5438 -74.6258 207938440 690667 433 6 759 14 SRX7525232 Unrestricted 5.13 Metagenome 3300003374 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF DOE Joint Genome Institute (JGI) 3300003374 Metagenome Analysis Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.9082 -79.0499 105599019 190237 60 1 123 5 SRX1991099, SRX1991100 Unrestricted 0.0 Metagenome 3300003992 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D1 DOE Joint Genome Institute (JGI) 3300003992 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov, sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe, Susannah Tringe; Jinglie Zhou No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.05246563 -121.76914021 645203325 2006233 866 10 1938 21 SRX7142753 Unrestricted 0.0 Metagenome 3300020171 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR11_0.1 MetaG DOE Joint Genome Institute (JGI) 3300020171 Metagenome Analysis spades v. 3.10.1 Yes Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 61.2413 21.4947 587824487 1404046 497 7 860 12 SRX3918023 Unrestricted 38.85 Metagenome 3300011976 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human subgingival plaque microbial communities from Los Angeles, CA, USA - S13-02-D University of California, Los Angeles 3300011976 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human subgingival plaque 34.0722 -118.4441 176269073 258718 156 1 225 0 SRX862755 0.0 Metagenome 7000000041 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159268001 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000041 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 157458756 271911 0 0 0 0 0.0 Metagenome 3300011731 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00494 Weill Cornell Medical College 3300011731 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.84 -73.87 33518651 52458 12 0 22 0 SRX822463 0.0 Metagenome 3300006988 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from Cariaco Basin, Caribbean Sea - 24B_WHOI_OMZ_CsCl DOE Joint Genome Institute (JGI) 3300006988 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 10.847 -65.114 84010878 163224 124 0 166 0 SRX7405288 Unrestricted 0.0 Metagenome 3300026775 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day122 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026775 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 39.849 -81.036 7982590 11427 10 0 15 0 SRX2996524 Unrestricted 0.0 Metagenome 3300046019 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_2_B DOE Joint Genome Institute (JGI) 3300046019 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 143743369 171567 82 2 111 3 Restricted 131.14 Metagenome 3300034993 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Sediment microbial communities from East River floodplain, Colorado, United States - 12_s17 DOE Joint Genome Institute (JGI) 3300034993 Metagenome Analysis metaspades v. 3.13.0 Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Aquatic Sediment Floodplain Unclassified sediment 38.9229 -106.9499 622430410 1537402 476 15 856 27 SRX7631463 Unrestricted 6.9 Metagenome 3300006491 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 763901136 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300006491 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 2976360 4164 6 0 11 2 SRX024086, SRX098546 0.0 Metagenome 3300070574 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from KU Field Station, Kansas, USA - UKFS_043-M-20180813-COMP-DNA1 Battelle Memorial Institute 3300070574 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 39.035201 -95.194409 6.79-6.9 1484950 5031 17 1 31 0 0.0 Metagenome 3300017393 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP1 (SPADES assembly) (version 2) DOE Joint Genome Institute (JGI) 3300017393 Metagenome Analysis MEGAHIT v. 1.0.3 released Yes Yes rstepanauskas@bigelow.org; duane.moser@dri.edu Ramunas Stepanauskas; Duane Moser No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Thermal springs 36.96 -116.72 78728560 237522 126 7 243 3 SRX2948733 Unrestricted 0.0 Metagenome 3300029105 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 133_M Beijing Genomics Institute (BGI) 3300029105 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 187063762 265127 163 2 293 1 ERX490951 0.0 Metagenome 3300028708 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152 DOE Joint Genome Institute (JGI) 3300028708 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92057636 -106.94874802 559882615 1475098 398 12 705 24 SRX5354687 Unrestricted 10.51 Metagenome 3300039194 *Microbiome Finished Marine algae associated bacterial community from Sydney, Australia Marine algae associated bacterial community from Sydney, Australia - Ulva australis_3R4 w/o D323 Ramaciotti Centre for Genomics 3300039194 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes j.nappi@unsw.edu.au Jadranka Nappi No Host-associated Algae Unclassified Unclassified Unclassified Marine -33.990304 151.231529 273718333 382285 37 10 88 11 0.0 Metagenome 3300024970 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 20_HOW5 (SPAdes) DOE Joint Genome Institute (JGI) 3300024970 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 91696917 162696 55 6 76 4 SRX2720160 Unrestricted 0.0 Metagenome 3300047484 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lake Yojoa, Honduras - Yojoa_01_2020_B_epi (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047484 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Lake Freshwater Unclassified Freshwater 14.8084 -87.9952 851389370 1226960 139 93 265 112 Unrestricted 0.0 Metagenome 3300027804 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027804 Metagenome Analysis spades v. 3.11.1 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 1063929080 2100174 578 168 813 201 SRX2518379 Unrestricted 0.0 Metagenome 3300026262 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV75 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026262 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 394888313 886507 406 4 629 11 SRX3194972 Unrestricted 0.0 Metagenome 3300013940 *Microbiome Permanent Draft Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 252 Chalmers University of Technology 3300013940 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 108373162 200470 110 0 195 0 SRX193532 0.0 Metagenome 3300003069 *Microbiome Permanent Draft Coral viral communities from Mount Irvine Bay, Buccoo, Tobago, from healthy and bleached corals Coral viral communities from Mount Irvine Bay, Buccoo, Tobago - bleached corals 3300003069 Metagenome Analysis Made public because these are downloaded from Genbank No Yes kmarhaver@ucsd.edu Marhaver, KL Yes 18479440 Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral 11.183496 -60.816715 611050 1370 0 0 0 0 0.0 Metagenome 3300009664 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHG2_MetaG DOE Joint Genome Institute (JGI) 3300009664 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 34.72 135.27 726038730 1290948 653 2 1019 3 SRX2338771 Unrestricted 0.0 Metagenome 3300070647 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_002-M-20170721-COMP-DNA1 3300070647 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 95306749 267392 118 2 238 4 0.0 Metagenome 3300012637 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100665 University of Pennsylvania 3300012637 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 22703025 55529 18 5 21 5 SRX756429 0.0 Metagenome 3300007763 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila suzukii female 5 gut Cornell University 3300007763 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy Yes Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila suzukii female adult gut 42.875296 -77.006403 371642052 411215 7 19 13 19 0.0 Metagenome 3300029247 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012063-31 Beijing Genomics Institute (BGI) 3300029247 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 181020106 246814 177 1 261 1 0.0 Metagenome 3300059689 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2021-2007 DOE Joint Genome Institute (JGI) 3300059689 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.70406 -83.25291 764454537 1985425 609 112 1025 155 Unrestricted 0.0 Metagenome 3300053084 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere DOE Joint Genome Institute (JGI) 3300053084 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.121 -123.2704 745208746 1292458 292 18 501 29 Unrestricted 0.0 Metagenome 3300037255 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_C2 DOE Joint Genome Institute (JGI) 3300037255 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 838606057 1990633 467 58 842 120 SRX8397781 Unrestricted 6.37 Metagenome 3300055486 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.4W.7 SIP fraction DOE Joint Genome Institute (JGI) 3300055486 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 171707890 316848 87 1 151 3 Unrestricted 14.2 Metagenome 3300050137 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim3 40-44 DOE Joint Genome Institute (JGI) 3300050137 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.352963 19.04747 692759759 1000680 178 2 254 1 Restricted 13.9 Metagenome 3300012186 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ416 (21.06) DOE Joint Genome Institute (JGI) 3300012186 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.0727 164.0602 822312114 1721004 495 2 808 3 SRX3369949 Unrestricted 0.0 Metagenome 3300025325 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025325 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 2239234658 4489528 1313 3 2225 12 SRX1991817 Unrestricted 0.0 Metagenome 3300043659 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 271-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043659 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9793 -107.0383 479427387 1323750 474 34 884 77 Unrestricted 6.47 Metagenome 3300049054 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - B10_A_BS (version 2) DOE Joint Genome Institute (JGI) 3300049054 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 206231037 463464 573 18 1185 31 Unrestricted 0.0 Metagenome 3300040342 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 060_R1_022417 University of Maryland 3300040342 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.96534167 25.69966667 4511430 8801 9 0 11 0 0.0 Metagenome 3300027535 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027535 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 262505089 673282 205 30 450 50 SRX3312089 Unrestricted 0.0 Metagenome 3300038438 *Microbiome Permanent Draft Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA - DeMMO1 v2 Argonne National Laboratory 3300038438 Metagenome Analysis Megahit v. 1.0.6.1 Release as per PI request (GOLD-1409) SM 8.16.2021 No Yes maggie@northwestern.edu; lmmomper@gmail.com Magdalena Osburn; Caitlin Casar No Environmental Terrestrial Aquifer Deep subsurface Unclassified Terrestrial subsurface aquifer 44.350833 -103.765833 7.4 101584177 133337 59 3 109 3 0.0 Metagenome 3300022470 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-10-11_MG DOE Joint Genome Institute (JGI) 3300022470 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.0114 -110.5956 345302164 693567 172 0 254 2 SRX3982358 Unrestricted 27.38 Metagenome 3300005253 *Microbiome Permanent Draft Marine sediment microbial community from Loki's castle, Arctic Ocean Marine sediment microbial community near Loki's castle Uppsala University 3300005253 Metagenome Analysis Spades 3.5 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, thijs.ettema@ebc.uu.se; NNIvanova@lbl.gov Natasha Ivanova, Thijs J. G. Ettema; Natalia Ivanova Yes 25945739 Environmental Aquatic Oceanic Marine Sediment Marine sediment 73.763167 8.464 7.66 -3283 361409001 681333 123 1 219 1 SRX684858 0.0 Metagenome 3300047661 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - P.F.S.T100.v12 (version 2) DOE Joint Genome Institute (JGI) 3300047661 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3533 19.0466 177467923 241374 93 10 91 16 Restricted 0.0 Metagenome 3300003087 *Microbiome Finished Sediment microbial communities from Laguna de Carrizo, Spain Freshwater sediment microbial communities from Laguna de Carrizo, Central Spain - shallow section 3300003087 Metagenome Analysis Newbler v. 2.3 Made public because these are downloaded from Genbank No Yes ipagani@lbl.gov Ferrer,M., Ionna Pagani Yes 21735153 Environmental Aquatic Lentic Freshwater Sediment Sediment 40.31 -3.66 2670014 3609 2 0 6 0 0.0 Metagenome 3300053100 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 endosphere DOE Joint Genome Institute (JGI) 3300053100 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.588049 -123.193187 502562868 634594 68 91 101 111 Unrestricted 0.0 Metagenome 3300038757 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A39_5cm_12M University of Tennessee 3300038757 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 107395559 252336 107 2 222 5 SRX710610 0.0 Metagenome 3300026233 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Maryland, USA - DAQMD-021 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026233 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 49300789 89170 52 10 83 18 SRX2770401 Unrestricted 0.0 Metagenome 3300056699 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.5W.10 SIP fraction DOE Joint Genome Institute (JGI) 3300056699 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 158405793 284565 193 30 304 53 Unrestricted 17.97 Metagenome 3300032274 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 1 DOE Joint Genome Institute (JGI) 3300032274 Metagenome Analysis spades v. 3.13.0 Yes Yes jbeam@bigelow.org; demerson@bigelow.org Jake Beam; David Emerson No Environmental Aquatic Coastal Marine Sediment microbial mat 43.8603 -69.5781 554491049 1214121 582 73 945 119 SRX6412329 Unrestricted 19.43 Metagenome 3300004096 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 2) (version 3) DOE Joint Genome Institute (JGI) 3300004096 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 1522187392 4444783 828 222 1581 540 SRX2565054, SRX2565055, SRX2565056 Unrestricted 0.0 Metagenome 3300044679 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Soil microbial communities from peatland in Alberta, Canada - SB-U-BARE 0-10 cm DOE Joint Genome Institute (JGI) 3300044679 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4621 -114.8803 1291841542 1964885 384 28 558 56 Unrestricted 11.36 Metagenome 3300027148 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepB_8h DOE Joint Genome Institute (JGI) 3300027148 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 154072978 291628 97 3 138 8 SRX5245228 Unrestricted 17.79 Metagenome 3300000134 *Microbiome Draft Marine microbial communities from chronically polluted sediments in four geographic locations Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 07_21m DOE Joint Genome Institute (JGI) 3300000134 Metagenome Analysis released based on JGI ITS Yes Yes hdionisi@cenpat.edu.ar Hebe Dionisi No Environmental Aquatic Wetlands Marine Sediment Marine 59.363333 18.119167 98592268 271033 327 32 543 66 Unrestricted 0.0 Metagenome 3300026014 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_205 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026014 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 55342330 143114 130 1 226 4 SRX2564782, SRX2581060 Unrestricted 0.0 Metagenome 3300037810 *Microbiome Draft Leachate and groundwater microbial communities from a municipal landfill and adjacent aquifer in Southern Ontario, Canada Groundwater microbial communities from an aquifer near a municipal landfill in Southern Ontario, Canada - OW334 2017 University of Waterloo 3300037810 Metagenome Analysis spades v. 3.11.1 released by JGI data releasing policy No Yes laura.hug@uwaterloo.ca Laura Hug No Environmental Aquatic Groundwater Freshwater Contaminated Impacted groundwater 43.442 -80.577 4404448685 8464733 2610 24 4410 44 0.0 Metagenome 3300021161 *Microbiome Permanent Draft Freshwater planktonic and plastic biofilm microbial communities in Lake Erie, USA Freshwater plastic biofilm microbial communities from West Central Basin, Lake Erie, Canada - MD2014-0112D University of Michigan 3300021161 Metagenome Analysis Megahit v1.1.1 released by JGI data releasing policy No Yes gumm@umich.edu Jordan Gumm No Environmental Aquatic Lake Freshwater Unclassified lake plastic biofilm 41.94 -81.95 288371920 210206 3 5 2 5 0.0 Metagenome 3300033484 *Microbiome Permanent Draft Hot spring microbial communities from different geyser basins in Yellowstone National Park, WY, United States Hot spring water microbial communities from Norris Geyser Basin, Yellowstone National Park, WY, United States - NOR.PS_P DOE Joint Genome Institute (JGI) 3300033484 Metagenome Analysis spades v. 3.13.0 Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Unclassified Thermal springs Unclassified hot spring water 44.7265 -110.7091 146447188 297134 108 3 184 7 SRX7584806 Unrestricted 488.57 Metagenome 3300025238 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP2634 (SPAdes) DOE Joint Genome Institute (JGI) 3300025238 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 20.0 -52.63 177368731 335446 157 0 298 4 SRX1981964 Unrestricted 0.0 Metagenome 3300010966 *Microbiome Permanent Draft Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1bis, april 2016 FASTERIS 3300010966 Metagenome Analysis MetaSPAdes 3.9 released by JGI data releasing policy No Yes julien.crovadore@hesge.ch Julien CROVADORE No Environmental Aquatic Pond Freshwater Unclassified Pond fresh water 46.25 6.28 161692845 585681 100 33 163 66 0.0 Metagenome 3300035086 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 DOE Joint Genome Institute (JGI) 3300035086 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1125 -122.987 935729351 2174223 603 62 1038 103 SRX8289134 Unrestricted 7.3 Metagenome 3300036713 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Coastal sediment microbial communities from Delaware Bay, Delaware, United States - CS worm burrow well 6 DOE Joint Genome Institute (JGI) 3300036713 Metagenome Analysis spades v. 3.13.0 Yes Yes jbeam@bigelow.org; demerson@bigelow.org Jake Beam; David Emerson No Environmental Aquatic Coastal Marine Sediment worm burrow 38.7869 -75.1074 1466087346 2348590 635 53 1026 74 SRX8136468, SRX8136467 Unrestricted 0.0 Metagenome 3300011621 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00888 Weill Cornell Medical College 3300011621 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.89 29892902 41922 8 0 18 0 SRX822852 0.0 Metagenome 3300028472 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_05JUN2017_LD1 DOE Joint Genome Institute (JGI) 3300028472 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 69952046 126905 5 37 3 59 SRX5345797 Unrestricted 19.98 Metagenome 3300069469 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_003-M-20170731-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069469 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 10658931 33782 67 4 131 8 0.0 Metagenome 3300056855 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Activated sludge microbial communities from bioreactor in WWTP, Madison, WI, USA - RS_2020-02-05_SampleA (version 2) DOE Joint Genome Institute (JGI) 3300056855 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.03331 -89.35633 124226049 150404 75 8 91 8 Unrestricted 0.0 Metagenome 3300006258 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 159247771 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006258 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 83659129 97027 77 0 102 0 0.0 Metagenome 3300010046 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama - MetaG Plot_36 DOE Joint Genome Institute (JGI) 3300010046 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes cpan@ou.edu Chongle Pan No Environmental Terrestrial Tropical forest Soil Bulk soil Tropical forest soil 9.1086 -79.8436 3136640987 6432284 1372 46 2633 91 SRX2526024 Unrestricted 0.0 Metagenome 3300027489 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepC_8d DOE Joint Genome Institute (JGI) 3300027489 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 171478114 289522 127 12 188 24 SRX5245206 Unrestricted 13.16 Metagenome 7000000480 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764143897 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000480 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 99907249 159424 0 0 0 0 0.0 Metagenome 3300009960 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 13 Autonomous University of Barcelona 3300009960 Metagenome Analysis SPAdes-3.8.1-Linux released per JGI data release policy Yes Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 6616586 12118 4 0 2 0 0.0 Metagenome 3300043746 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - 1SFNV_THU_A25E DOE Joint Genome Institute (JGI) 3300043746 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.2467 -62.8451 550027148 1609420 402 8 737 11 Unrestricted 8.14 Metagenome 3300039371 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 201_B Beijing Genomics Institute (BGI) 3300039371 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 38305411 41711 22 0 38 0 ERX490997 0.0 Metagenome 3300013644 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00909 Weill Cornell Medical College 3300013644 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.89 13979854 17242 9 0 15 0 SRX822872 0.0 Metagenome 3300044733 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME20Aug2014-rr0926 DOE Joint Genome Institute (JGI) 3300044733 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1155049673 1837282 416 79 582 132 Unrestricted 15.89 Metagenome 3300035319 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Leptogorgia sarmentosa from Algarve, Portugal - LS06H Euk Molecular Research LP (MR DNA) 3300035319 Metagenome Analysis Metawrap workflow v. 1.0.5 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 24377398 24866 0 1 0 1 0.0 Metagenome 7000000162 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763860675 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000162 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 69612519 127734 0 0 0 0 0.0 Metagenome 3300069608 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from LBJ National Grassland , Southern Plains, TX, USA - CLBJ_038-O-20170413-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069608 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 33.40123 -97.57 14778982 44163 97 10 200 16 0.0 Metagenome 3300069487 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_009-M-20160719-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069487 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 12836727 40795 38 3 55 0 0.0 Metagenome 3300018466 *Microbiome Permanent Draft Populus soil microbial communities from riparian zone of different river systems in the western United States Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T DOE Joint Genome Institute (JGI) 3300018466 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jen.schweitzer@utk.edu Jennifer Schweitzer No Environmental Terrestrial Riparian zone Soil Unclassified soil 33.5944 -109.1397 3457024542 8575149 3290 146 5766 280 SRX4808886 Unrestricted 6.32 Metagenome 3300027467 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepB_8h DOE Joint Genome Institute (JGI) 3300027467 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 258446940 573919 214 17 337 27 SRX5245405 Unrestricted 12.99 Metagenome 3300007622 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02 DOE Joint Genome Institute (JGI) 3300007622 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2327 -123.9168 344144426 694180 331 14 555 19 SRX2753613 Unrestricted 0.0 Metagenome 3300001617 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF033 DOE Joint Genome Institute (JGI) 3300001617 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 765618 2814 4 1 13 3 SRX2014321 Unrestricted 0.0 Metagenome 3300001958 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Gulf of Mexico, USA - GS016 J. Craig Venter Institute (JCVI) 3300001958 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine 24.174723 -84.344444 88679928 152380 82 3 128 4 0.0 Metagenome 3300020394 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B000000557 (ERX556068-ERR599026) CEA Genoscope 3300020394 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -17.5656 42.1988 932850780 2393825 562 36 888 59 0.0 Metagenome 3300038517 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark - 1488-PRJ1066-RD-Sewage-32_S1_L001 Technical University of Denmark 3300038517 Metagenome Analysis Yes Yes No Engineered Wastewater Unclassified Sewage Unclassified Sewage 55.640494 12.5058209 2333347 5479 19 0 42 0 ERX1584018 0.0 Metagenome 3300030305 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from healthy individual in Toronto, Canada - MG100154 University of Michigan 3300030305 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 43.65 -79.38 55468341 98365 89 0 145 10 0.0 Metagenome 3300009040 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - Mg.Ma.e DOE Joint Genome Institute (JGI) 3300009040 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes avisel@lbl.gov, laila.partida@cinvestav.mx Axel Visel, Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.7658 -100.163 543108034 801144 69 226 135 347 SRX2124747 Unrestricted 0.0 Metagenome 3300003191 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment Column8K5-120 454 Life Sciences 3300003191 Metagenome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.342219 40.479289 6-8 0 0 0 0 0 0 0.0 Metagenome 3300035558 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_1_24_6 mgh University of Alberta 3300035558 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 49286306 63293 32 0 29 0 0.0 Metagenome 3300038831 *Microbiome Permanent Draft Marine sediment microbial communities from Mesquite Bay, Texas, USA Marine sediment microbial communities from Mesquite Bay, Texas, USA - MB4D 12-15 cm Michigan State University 3300038831 Metagenome Analysis MegaHit v. 1.1.1 released by JGI data releasing policy No Yes acidophile@gmail.com Brett Baker No Environmental Aquatic Sediment Marine Unclassified marine sediment 28.147 -96.8455 425118357 458874 59 0 47 0 0.0 Metagenome 3300013555 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100785 University of Pennsylvania 3300013555 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 837187 2434 4 0 18 3 SRX756069 0.0 Metagenome 3300070872 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_003-M-20200803-COMP-DNA1 Battelle Memorial Institute 3300070872 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.118581 -99.239944 6.59-7.89 16146493 50098 36 1 77 5 0.0 Metagenome 3300002119 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Nasutitermes corniger P3 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P3 DOE Joint Genome Institute (JGI) 3300002119 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes brune@mpi-marburg.mpg.de Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 26.0625 -80.2332 634519147 1350125 419 3 984 8 SRX2553513, SRX2553514 Unrestricted 0.0 Metagenome 3300028713 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184 DOE Joint Genome Institute (JGI) 3300028713 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92030701 -106.94839471 471000019 1325635 414 17 729 23 SRX5354722 Unrestricted 10.23 Metagenome 3300070560 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_004-O-20190807-COMP-DNA1 Battelle Memorial Institute 3300070560 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 68.616768 -149.629355 4.84-5.22 7832651 23994 33 1 63 1 0.0 Metagenome 3300013369 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -PAB010 Weill Cornell Medical College 3300013369 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -74.01 42980617 78499 43 3 48 10 SRX823438 0.0 Metagenome 3300024964 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 70_HOW9 (SPAdes) DOE Joint Genome Institute (JGI) 3300024964 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 103953787 151898 50 1 61 2 SRX2720790 Unrestricted 0.0 Metagenome 3300027502 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027502 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 228650272 586120 278 35 549 45 SRX3311921 Unrestricted 0.0 Metagenome 3300034951 *Microbiome Permanent Draft Marine microbial communities from Baffin Bay, Canada Marine microbial communities from Baffin Bay, Canada - S108_438m Genome Quebec 3300034951 Metagenome Analysis Spades v. 3.12.0 released by JGI data releasing policy Yes Yes thomas.grevesse@gmail.com Thomas Grevesse No Environmental Aquatic Oceanic Marine Aphotic zone marine 76.16205 -74.35773 748331733 1790934 412 127 752 214 0.0 Metagenome 3300022681 *Microbiome Permanent Draft Carpinteria Salt Marsh Metagenomes 2014 to 2017 Sediment microbial communities from hypersaline pond in Carpinteria, CA, United States - Winter T University of California, Irvine 3300022681 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Aquatic Intertidal zone Marine Sediment Sediment 34.401 -119.534 14687551 15688 19 0 18 1 0.0 Metagenome 3300017724 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 11 SPOT_SRF_2010-05-17 DOE Joint Genome Institute (JGI) 3300017724 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 303360057 711837 78 50 142 92 SRX7207087, SRX7207086 Unrestricted 0.0 Metagenome 3300029163 *Microbiome Permanent Draft Infant fecal microbial communities from Pittsburgh, USA Infant fecal microbial communities from Pittsburgh, USA - NECEvent2014_6_4 Banfield Lab, University of California, Berkeley 3300029163 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant fecal 40.4308 -79.9598 29253716 30967 58 0 54 0 0.0 Metagenome 3300045155 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_1_A DOE Joint Genome Institute (JGI) 3300045155 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 162881294 189096 98 1 112 1 Unrestricted 92.74 Metagenome 3300014575 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Venezuela to Iowa, USA - V5 Iowa State University 3300014575 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 4218577 7980 0 3 1 1 SRX1150312 0.0 Metagenome 3300047626 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA099-CHB DOE Joint Genome Institute (JGI) 3300047626 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6359 -83.4952 482493218 1275734 336 20 662 16 Unrestricted 8.72 Metagenome 3300071089 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Arizona, USA - SRER_005-M-20170815-COMP-DNA1 3300071089 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 3624072 11661 36 5 75 13 0.0 Metagenome 3300049717 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 E1 10-14 DOE Joint Genome Institute (JGI) 3300049717 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3544 19.0458 506084396 782007 227 1 414 6 Restricted 13.64 Metagenome 3300012110 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF #359 DOE Joint Genome Institute (JGI) 3300012110 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 78340986 156383 42 1 92 5 SRX3241971 Unrestricted 0.0 Metagenome 3300024044 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant dump, University of Wisconsin, Madison, United States - 1B20A (version 2) DOE Joint Genome Institute (JGI) 3300024044 Metagenome Analysis spades v. 3.11.1 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0758 -89.4125 134687552 180933 90 5 107 8 SRX4821858 Unrestricted 0.0 Metagenome 3300003360 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10.2A4w-11 DOE Joint Genome Institute (JGI) 3300003360 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 238082 817 27 0 35 0 SRX2576239 Unrestricted 0.0 Metagenome 3300025433 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKK (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025433 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 191332554 333182 134 3 193 7 SRX2746613 Unrestricted 0.0 Metagenome 3300044257 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_192 DOE Joint Genome Institute (JGI) 3300044257 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 381356337 1083102 552 18 1048 33 Unrestricted 7.0 Metagenome 3300071067 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_045-M-20190730-COMP-DNA1 3300071067 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 46572452 128734 79 9 138 22 0.0 Metagenome 3300050299 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_61 DOE Joint Genome Institute (JGI) 3300050299 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -75.858 159.974 412849061 602232 108 7 149 6 SRX18236978 Restricted 35.27 Metagenome 3300020378 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102) CEA Genoscope 3300020378 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 19.0342 64.5162 545159417 1434051 375 23 578 44 0.0 Metagenome 3300005851 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter A (PS_A) MetaG (SPADES assembly) (version 2) DOE Joint Genome Institute (JGI) 3300005851 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, jim.fredrickson@pnnl.gov Natasha Ivanova, Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Thermal spring 44.376 -110.69 73012051 105945 44 0 58 0 SRX2577258 Unrestricted 0.0 Metagenome 3300001352 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic Microbial community sample from North Sea - COGITO 998_met_07 DOE Joint Genome Institute (JGI) 3300001352 Metagenome Analysis Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Pelagic marine 54.184167 7.9 603831589 1186241 469 121 833 182 SRX802077 Unrestricted 0.0 Metagenome 3300002593 *Microbiome Permanent Draft Ridgeia piscesae microbial communities from Northeast Pacific Ocean hydrothermal vents Host-associated microbial community of the tubeworm Ridgeia piscesae from hydrothermal vents Sample -index 11 (Hulk HF) Canada's Michael Smith Genome Sciences Centre 3300002593 Metagenome Analysis released per JGI data release policy No Yes maepz@hotmail.com Maeva Perez, maeva perez No Host-associated Annelida Trophosome Intracellular endosymbionts Unclassified Ridgeia piscesae 47.95 -129.083563 4809763 7858 4 1 4 2 0.0 Metagenome 3300026517 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 8D DOE Joint Genome Institute (JGI) 3300026517 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 313531525 729183 307 45 452 73 SRX4457340 Unrestricted 18.68 Metagenome 3300031638 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - CB4_surface DOE Joint Genome Institute (JGI) 3300031638 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified Marine 75.0007 -150.0027 594953781 1259879 257 195 457 322 SRX5797823 Unrestricted 19.88 Metagenome 3300011875 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00892 Weill Cornell Medical College 3300011875 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.89 46117136 73410 21 0 32 0 SRX822855 0.0 Metagenome 3300026831 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 9 (SPAdes) DOE Joint Genome Institute (JGI) 3300026831 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 53046726 108298 59 0 151 0 SRX4338367 Unrestricted 0.0 Metagenome 3300047172 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Western Region, Iceland - Sphagnum teres H_TE_ICE DOE Joint Genome Institute (JGI) 3300047172 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 1199547646 1870304 472 83 646 121 SRX14787325 Unrestricted 9.92 Metagenome 3300013387 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100156 University of Pennsylvania 3300013387 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 170230 532 5 0 11 0 SRX756376 0.0 Metagenome 3300008145 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160704339 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008145 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 41422320 62142 59 0 84 0 0.0 Metagenome 3300022807 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R15 Version 2 University of New South Wales 3300022807 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 104471290 169051 61 3 89 2 0.0 Metagenome 3300003584 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI073_LV_100m_DNA DOE Joint Genome Institute (JGI) 3300003584 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 215105865 446695 253 7 462 12 Unrestricted 0.0 Metagenome 3300029931 *Microbiome Permanent Draft Activated sludge bacterial and viral communities from EBPR bioreactors in Australia Activated sludge bacterial and viral communities from EBPR bioreactors in Queensland, Australia - SBR4-V90308 California Institute of Technology 3300029931 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Activated sludge -27.49999 153.01209 14218327 26212 10 0 12 0 SRX1077115 0.0 Metagenome 3300029776 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 037_10_29_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029776 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 216747126 275042 248 0 315 0 0.0 Metagenome 3300060421 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210602_06_13 DOE Joint Genome Institute (JGI) 3300060421 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 983529594 1423988 309 172 407 204 Unrestricted 22.96 Metagenome 3300013715 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100349 University of Pennsylvania 3300013715 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 19531033 32575 31 3 63 16 SRX756308 0.0 Metagenome 3300046395 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA072-CHB DOE Joint Genome Institute (JGI) 3300046395 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6359 -83.4952 410138925 1059226 322 8 589 20 Unrestricted 8.65 Metagenome 3300018421 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300018421 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1956894889 4200362 1327 92 2195 142 SRX4074030 Unrestricted 14.07 Metagenome 3300000658 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 38 DOE Joint Genome Institute (JGI) 3300000658 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 805377 2585 7 0 15 0 SRX4340825 Unrestricted 0.0 Metagenome 3300028553 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_16m DOE Joint Genome Institute (JGI) 3300028553 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater 39.9879 -1.8737 915332413 1547374 500 58 679 84 SRX5249010 Unrestricted 28.68 Metagenome 3300042608 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Palmitermes impostor from Petit Saut, French Guiana, France - Pal332 Eurofins MWG Operon 3300042608 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 5.071383 -53.039049 811647844 790051 103 7 188 24 0.0 Metagenome 3300000917 *Microbiome Draft Wetland microbial communities from Twitchell Island in the Sacramento Delta Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A2 Cattail v2 (version 2) DOE Joint Genome Institute (JGI) 3300000917 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes stringe@lbl.gov, sgtringe@lbl.gov Susannah Tringe Yes 25991679 Environmental Aquatic Wetlands Marine Sediment Wetland 38.107057 -121.647578 146925476 408994 389 17 715 26 Unrestricted 0.0 Metagenome 3300070384 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_013-O-20160803-COMP-DNA3 3300070384 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 3522848 11973 36 8 55 11 0.0 Metagenome 3300030332 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_111 - TARA_R100000656 CEA Genoscope 3300030332 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -16.9486 -100.6715 194106656 409316 38 0 72 0 0.0 Metagenome 3300026106 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_D1_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026106 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Soil 37.4971 -122.129 116748770 273867 189 18 320 18 SRX10967101 Unrestricted 0.0 Metagenome 3300013768 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A35_65cm_0M University of Tennessee 3300013768 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 414894180 943131 141 2 283 4 SRX710564 0.0 Metagenome 3300045009 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_0_1m_2015 DOE Joint Genome Institute (JGI) 3300045009 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 480291614 864786 286 50 499 72 Unrestricted 31.9 Metagenome 3300021126 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 24JUN2008 epilimnion DOE Joint Genome Institute (JGI) 3300021126 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 81135931 170349 87 14 131 34 Unrestricted 0.0 Metagenome 7000000671 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 638754422 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000671 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 134783148 238824 0 0 0 0 0.0 Metagenome 3300005737 *Microbiome Permanent Draft Microbial degradation of oil Seawater microbial communities from Vineyard Sound, MA, USA - sterilised with crude oil T14 University of Wisconsin, Madison 3300005737 Metagenome Analysis velvet released per JGI data release policy No Yes rsimiste@haverford.edu, rlsimister@gmail.com rachel simister, Rachel Simister No Environmental Aquatic Unclassified Marine Unclassified marine 41.4417 -70.7744 67799163 134962 157 0 201 0 0.0 Metagenome 3300001130 *Microbiome Permanent Draft Hypersaline microbial communities from Lake Vida, Antarctica Hypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron v2 (version 4) DOE Joint Genome Institute (JGI) 3300001130 Metagenome Analysis released based on JGI ITS Yes Yes alison@dri.edu Alison Murray No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline -77.38861 161.931111 292700959 707110 87 2 168 5 SRX3181484 Unrestricted 0.0 Metagenome 3300032298 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains Ecozone, Canada - Lake 08-212 Genome Quebec 3300032298 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.876582 -81.981245 964084372 1966175 476 135 802 245 0.0 Metagenome 7000000416 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158944319 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000416 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 93523753 172270 0 0 0 0 0.0 Metagenome 3300023216 *Microbiome Permanent Draft Deep ocean water column microbial communities from Yap Trench, western Pacific Ocean Seawater microbial communities from Yap Trench, western Pacific Ocean - 37I-Yap-CTD03-6000m Third Institute of Oceanography, State Oceanic Administration 3300023216 Metagenome Analysis idba v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Abyssopelagic Marine Unclassified seawater 9.83 138.48 814991832 1474907 368 10 694 16 0.0 Metagenome 3300041764 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_129 MetaG AgResearch, New Zealand, Mosgeil 3300041764 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1677964228 3202402 297 32 1038 34 0.0 Metagenome 3300026757 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06K5-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026757 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 21236983 72401 87 2 164 9 SRX2576209 Unrestricted 0.0 Metagenome 3300035010 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Oscillatoria tanganyikae FI6-MK23 and co-occurring heterotrophs from soil from Fort Irwin, California, United States - 20181109_37A DOE Joint Genome Institute (JGI) 3300035010 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.1642 -116.8729 81772796 83784 35 0 36 0 SRX8239039 Unrestricted 148.97 Metagenome 3300011139 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00814 Weill Cornell Medical College 3300011139 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.76 -73.98 18261099 29873 12 0 23 0 SRX822780 0.0 Metagenome 3300065621 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 806 in Chinook, Alberta, Canada - S00JY_0530 Microbiome Insights 3300065621 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.26457862 -110.5952179 6553406 10362 16 0 30 0 0.0 Metagenome 3300011666 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00964 Weill Cornell Medical College 3300011666 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.72 -73.86 32135487 48266 19 0 42 0 SRX822926 0.0 Metagenome 3300040948 *Microbiome Permanent Draft Marine microbial communities from the Puerto Rico Trench, Atlantic Ocean Marine microbial communities from the Puerto Rico Trench, Atlantic Ocean - 6000m T0 Michigan State University 3300040948 Metagenome Analysis metaSPAdes v. 3.0 released by JGI data releasing policy No Yes alm067@ucsd.edu; dhondt@uri.edu Alvaro M. Plominsky; Steven D'Hondt No Environmental Aquatic Hadalpelagic Marine Unclassified Marine 19.3592 -65.346517 926267275 1906656 201 27 540 49 0.0 Metagenome 3300008417 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Sea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC12T Shell Corporation 3300008417 Metagenome Analysis idba_ud Released on PI's request No Yes ebalsop@lbl.gov, nicolas.tsesmetzis@shell.com Eric Alsop, Nicolas Tsesmetzis No Environmental Aquatic Cold seeps Marine Sediment Sediment 27.4 -93.2 902097346 3522118 679 12 1391 13 0.0 Metagenome 3300010201 *Microbiome Permanent Draft Phototrophic microbial communities Littoral zone phototrophic microbial communities from Lake Waban, Wellesley, MA - FCC6 Marine Biological Laboratory 3300010201 Metagenome Analysis CLC released per JGI data release policy No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Lake Freshwater Sediment littoral 42.2876 -71.30117 36366477 40551 7 0 12 0 0.0 Metagenome 3300019762 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - BB_3_MG DOE Joint Genome Institute (JGI) 3300019762 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Microbial mats Freshwater microbial mat 38.7906 -75.1644 346663718 695723 611 15 947 15 SRX3982507 Unrestricted 10.39 Metagenome 3300014120 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room spacecraft assembly facility microbial communities from NASA Jet Propulsion Laboratory, California, USA - Floor swab, replicate C SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300014120 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1991 -118.1715 6214766 12460 7 0 12 0 Unrestricted 0.0 Metagenome 3300042469 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Nov2010DC-rr0474 DOE Joint Genome Institute (JGI) 3300042469 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 939055527 1466005 330 86 477 111 Unrestricted 28.79 Metagenome 3300005458 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG DOE Joint Genome Institute (JGI) 3300005458 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn rhizosphere 42.3948 -85.3738 4536690544 11430300 3348 173 5665 358 SRX2740407 Unrestricted 0.0 Metagenome 3300028964 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 45_12M Beijing Genomics Institute (BGI) 3300028964 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 77363924 100240 56 0 83 0 ERX491143 0.0 Metagenome 3300069501 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_037-O-20160810-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069501 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 12197993 38893 50 4 81 11 0.0 Metagenome 3300056709 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.4C.8 SIP fraction DOE Joint Genome Institute (JGI) 3300056709 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 163472897 307839 113 4 175 8 Unrestricted 17.64 Metagenome 3300012122 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT200_2 DOE Joint Genome Institute (JGI) 3300012122 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9224 -106.9518 87986642 212231 171 16 337 39 SRX3368756 Unrestricted 0.0 Metagenome 3300001838 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM33, ROCA_DNA217_0.2um_bLM_C_2a 3300001838 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Lotic Freshwater Unclassified Marine plankton -1.519367 -48.91795 78011833 184644 35 7 102 18 0.0 Metagenome 3300044841 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_42CD DOE Joint Genome Institute (JGI) 3300044841 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4983 -106.0735 1331278018 2166750 352 71 595 92 SRX20649828 Unrestricted 14.62 Metagenome 3300069399 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_002-M-20160810-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069399 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 6607820 23248 85 6 156 4 0.0 Metagenome 3300043524 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield ecozone, Canada - Lake 06-315 Genome Quebec 3300043524 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.711052 -83.684753 1058204449 2538127 575 202 951 396 0.0 Metagenome 3300025664 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025664 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 416902019 832732 234 9 361 19 SRX1987658 Unrestricted 0.0 Metagenome 3300035651 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS43_6 University of Hohenheim 3300035651 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 93463780 121206 70 0 94 0 0.0 Metagenome 3300028044 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_15m DOE Joint Genome Institute (JGI) 3300028044 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater 39.9879 -1.8737 748848179 1248984 389 49 560 71 SRX5249011 Unrestricted 25.71 Metagenome 3300038743 *Microbiome Draft Sediment microbial communities from mud volcano in Sakhalin, Russia Sediment microbial communities from mud volcano in Sakhalin, Russia - Sakh5 Research Center of Biotechnology of RAS 3300038743 Metagenome Analysis SPAdes v. 3.13.2 released by JGI data releasing policy Yes Yes chistvas@gmail.com Vasiliy Chistyakov No Environmental Terrestrial Unclassified Mud volcano Unclassified sediment 52.047101 143.094073 250666089 504811 144 4 277 3 0.0 Metagenome 3300002427 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP06-I1 3300002427 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300042774 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N3_50_60 NMDC pilot DOE Joint Genome Institute (JGI) 3300042774 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37379502 -119.2722385 40331509 119637 174 5 322 8 SRX2523196 0.0 Metagenome 3300070653 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_003-O-20180723-COMP-DNA1 3300070653 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 2920452 9868 51 3 76 3 0.0 Metagenome 3300020464 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000530 (ERX556075-ERR599101) CEA Genoscope 3300020464 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -30.1495 -43.2486 1364189877 3803570 690 119 1300 236 0.0 Metagenome 3300041541 *Microbiome Draft Fumarole sediment bacterial commnuities from geothermic field Los Azufres, Michoacan, Mexico Fumarole sediment bacterial comunities from Maritaro spa, Michoacan Mexico - C v.2 Macrogen Inc 3300041541 Metagenome Analysis SPAdes v. 3.8 released by JGI data releasing policy No Yes hhbolivart@unal.edu.co Hermes Hernan Bolivar-Torres No Environmental Terrestrial Fumaroles Volcanic Unclassified Fumarole sediment 19.8221 -100.6681 484878424 772251 166 58 237 60 0.0 Metagenome 3300012676 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT433_2 DOE Joint Genome Institute (JGI) 3300012676 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9228 -106.9519 138246276 316051 205 11 428 21 SRX3368874 Unrestricted 0.0 Metagenome 3300036547 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - IV_Palsa_F2 DOE Joint Genome Institute (JGI) 3300036547 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 84377833 225767 121 25 184 42 SRX8398532 Unrestricted 4.88 Metagenome 3300030451 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_058 - TARA_R100000278 CEA Genoscope 3300030451 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -17.2855 42.2866 260011116 560251 17 0 31 0 0.0 Metagenome 3300045218 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_5_E DOE Joint Genome Institute (JGI) 3300045218 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 169034276 212810 94 1 110 2 Unrestricted 94.03 Metagenome 3300045772 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - S1-R2-B DOE Joint Genome Institute (JGI) 3300045772 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3555 19.0475 407191643 907462 232 30 387 40 Unrestricted 7.13 Metagenome 3300050176 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BT04-02redo_D0 (version 2) DOE Joint Genome Institute (JGI) 3300050176 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3555 19.0492 402368035 728428 210 23 337 23 Restricted 0.0 Metagenome 3300041479 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover leaf microbial community from Lincoln, Canterbury, New Zealand - WCL18_11 MetaG AgResearch, New Zealand, Mosgeil 3300041479 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 509188347 703078 140 36 451 87 0.0 Metagenome 3300020002 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - U1a1 DOE Joint Genome Institute (JGI) 3300020002 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9223 -106.954 346438842 740395 215 19 445 32 SRX3958489, SRX3958488 Unrestricted 0.0 Metagenome 3300004145 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2 DOE Joint Genome Institute (JGI) 3300004145 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.198971 -122.026955 764831195 2251732 780 6 1668 10 SRX7142966 Unrestricted 0.0 Metagenome 3300060396 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210616_20_01 DOE Joint Genome Institute (JGI) 3300060396 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 413494661 624183 203 115 295 157 Unrestricted 37.93 Metagenome 3300009325 *Microbiome Permanent Draft Processed tobacco microbial communities from USA domestic dry snuff Processed tobacco microbial communities from USA domestic dry snuff from retail store in Atlanta, GA, USA - Dry Snuff D1 2x mi-seq runs combined Centers for Disease Control and Prevention (CDC), USA 3300009325 Metagenome Analysis OMEGA 1.0.2 hash length 190 best assembly under 20000 scaffolds released per JGI data release policy Yes Yes wyu3@cdc.gov Tyx, Robert E. Tyx No Engineered Food production Unclassified Unclassified Unclassified processed fermented consumer product 33.733333 -84.383333 63665558 78697 56 20 48 25 0.0 Metagenome 3300027397 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300027397 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 24334690 81501 102 4 203 8 SRX1990523 Unrestricted 0.0 Metagenome 3300029253 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011692-133 Beijing Genomics Institute (BGI) 3300029253 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 210907962 284343 154 3 221 2 0.0 Metagenome 3300011528 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00605 Weill Cornell Medical College 3300011528 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.78 -73.95 20940031 32752 12 0 19 0 SRX822572 0.0 Metagenome 7000000594 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160704339 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000594 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 1865064 4086 0 0 0 0 0.0 Metagenome 3300001431 *Microbiome Permanent Draft Soil microbial communities from Kansas Great Prairie, USA, amended with BrdU Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly DOE Joint Genome Institute (JGI) 3300001431 Metagenome Analysis Clc-workbench Released on PI's approval No Yes maude.david@yahoo.fr Maude David No Environmental Terrestrial Loam Soil Grasslands Soil 39.100992 -96.608258 3476009161 14184656 839 51 1857 131 0.0 Metagenome 3300059835 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - APS4_18C_TP2_16O DOE Joint Genome Institute (JGI) 3300059835 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 4693598146 5844528 997 328 1254 441 Unrestricted 38.65 Metagenome 3300044448 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T16 D DOE Joint Genome Institute (JGI) 3300044448 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.676 -64.1509 547546561 1310531 54 5 78 8 Unrestricted 38.07 Metagenome 3300017432 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12SEP2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017432 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 231153194 446720 126 210 222 368 SRX3926273 Unrestricted 6.55 Metagenome 3300022723 *Microbiome Permanent Draft Solar saltern microbial communities from the Namib Desert Sediment microbial communities from solar saltern in the Namib Desert, Swakopmund, Namibia - Eisfeld source 2017 Genewiz Inc. 3300022723 Metagenome Analysis SPAdes v. 3.6.0 released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat and sediment -22.4834167 14.57258333 7.48 568535041 851417 131 2 215 3 0.0 Metagenome 3300008129 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 765094712 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008129 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 97193873 123946 78 0 103 0 0.0 Metagenome 3300032363 *Microbiome Permanent Draft STAs constructed wetland biome Wetland sediment microbial communities from Everglades, Florida, USA - STA88-Sample08_1 Combine08 University of Florida 3300032363 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy No Yes ng.hanh24@gmail.com Hanh Nguyen No Environmental Aquatic Wetlands Freshwater Sediment sediment 26.38 -80.51 6.6-8.4 115348983 161167 65 0 88 0 0.0 Metagenome 3300043103 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Shale gas microbial communities from Fort St. John, British Columbia, Canada - UGR 46 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043103 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back shale gas 56.0 -122.0 130609682 265262 134 17 159 40 SRX8356778 Unrestricted 56.54 Metagenome 3300025040 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-43 (SPAdes) DOE Joint Genome Institute (JGI) 3300025040 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 50.0008 -144.9989 88220553 155850 62 3 103 8 Unrestricted 0.0 Metagenome 2189573025 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Marine microbial communities from Columbia River, CM, sample from Newport Hydroline, GS310-FOS-0p8-Hyp-75m University of South Carolina 2189573025 Metagenome Analysis released per JGI data release policy No Yes mariyasmit@hotmail.com Mariya Smit, Mariya W. Smit No Environmental Aquatic Intertidal zone Marine Estuary Marine estuarine 44.651 -124.295 22802606 46086 39 0 53 0 0.0 Metagenome 3300035022 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - C3-7 Autonomous University of Barcelona 3300035022 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 95086066 390012 814 1 1386 0 0.0 Metagenome 3300051328 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water viral communities from Sandhills, Nebraska, United States - NSL_Island_2020_V DOE Joint Genome Institute (JGI) 3300051328 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.7342 -102.4104 379014607 943516 48 1 63 0 Unrestricted 52.44 Metagenome 3300012865 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - HID1975I_E1 MG DOE Joint Genome Institute (JGI) 3300012865 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 195085006 296413 196 0 245 4 SRX3564628 Unrestricted 0.0 Metagenome 3300064921 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 728 in Hairy hill, Alberta, Canada - S00JY_0629 Microbiome Insights 3300064921 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.4621528 -112.0407692 149886168 219841 41 0 77 0 0.0 Metagenome 3300014112 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room spacecraft assembly facility microbial communities from NASA Jet Propulsion Laboratory, California, USA - Floor swab, replicate A, treated with PMA SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300014112 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1991 -118.1715 981135 1862 1 0 4 0 Unrestricted 0.0 Metagenome 3300032024 *Microbiome Finished Cave microbial communities from biofilms and mineral spring water, Bavaria, Germany Wall biofilm microbial communities from Sulzbrunn cave, Bavaria, Germany - submersed biofilm The Keck Facility at the Josephine Bay Paul Center 3300032024 Metagenome Analysis metaspades v. 3.11 released by JGI data releasing policy Yes Yes clemuenchen@gmail.com clemens karwautz No Environmental Terrestrial Wall Cave Biofilm cave wall biofilm 47.67 10.39 7.5 606015517 1379381 236 7 515 18 0.0 Metagenome 3300012818 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched millipede-associated microbial communities from UW Madison campus, WI, USA - HID1971M_E0 MG DOE Joint Genome Institute (JGI) 3300012818 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 81238920 108015 60 0 92 0 SRX3564455 Unrestricted 0.0 Metagenome 3300025960 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025960 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 3787153395 9052927 1579 71 2942 110 SRX2740366 Unrestricted 0.0 Metagenome 3300007137 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Seawater microbiome, Papua New Guinea CO2 seep, Dobu ""control"", water-dc" University of New South Wales 3300007137 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au Nicole Webster No Environmental Aquatic Volcanic Marine Unclassified Volcanic CO2 seeps -9.752083 150.854133 122978096 295122 170 0 352 1 0.0 Metagenome 3300019781 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM15.S.D DOE Joint Genome Institute (JGI) 3300019781 Metagenome Analysis spades v. SPAdes version: 3.10.1 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1881 -86.344 42517229 117421 3 1 1 2 Unrestricted 0.0 Metagenome 3300041913 *Microbiome Finished Marine bacterial communities from Black Sea, Georgia Marine microbial communities from Black Sea, Gonio, Georgia ? P34 NCDC Lugar Center, Georgia 3300041913 Metagenome Analysis Denovo v. 3.2 released by JGI data releasing policy No Yes iakusradze@pha.ge Ia Kusradze No Environmental Aquatic Unclassified Marine Unclassified Marine 41.5605 41.5711 5822530 6687 5 5 9 6 0.0 Metagenome 3300003232 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-B DOE Joint Genome Institute (JGI) 3300003232 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 1287060 3779 22 3 42 4 SRX2575243 Unrestricted 0.0 Metagenome 3300039217 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - RDC-2_at_8-9_cm Genome Quebec 3300039217 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.80159 -73.41443 882664300 2038461 674 8 1331 9 0.0 Metagenome 3300005163 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgHMB DOE Joint Genome Institute (JGI) 3300005163 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Agricultural land Soil Unclassified Soil 45.54 -73.72 555423432 1784181 652 34 1274 66 SRX2521298 Unrestricted 0.0 Metagenome 3300044304 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T100 D DOE Joint Genome Institute (JGI) 3300044304 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7929 -64.3799 356233167 873202 8 2 9 1 Unrestricted 34.0 Metagenome 3300056902 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F2L_50_52 DOE Joint Genome Institute (JGI) 3300056902 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9762234 -81.70738203 1534082628 2254594 725 3 1146 0 Unrestricted 13.96 Metagenome 3300009433 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 DOE Joint Genome Institute (JGI) 3300009433 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 542933418 1107859 404 125 558 197 SRX2999530 Unrestricted 0.0 Metagenome 7000000578 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 338793263 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000578 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 6060001 9729 0 0 0 0 SRX024072 0.0 Metagenome 3300034106 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131 DOE Joint Genome Institute (JGI) 3300034106 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1642341297 3299346 711 53 1193 98 SRX7622151 Unrestricted 10.27 Metagenome 3300020035 *Microbiome Permanent Draft Rumen microbial communities from healthy moose, Palmer, Alaska Rumen fluid microbial communities from healthy moose, Palmer, Alaska - F08 Viral contigs Ohio State University 3300020035 Metagenome Analysis IDBA-UD released by Lindsey Solden No Yes solden.2@osu.edu Lindsey Solden Yes 30356154 Host-associated Mammals Stomach Digestive system Rumen Moose rumen 61.5997 -148.1128 3423894 4374 1 0 1 0 0.0 Metagenome 3300007914 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 508703490 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007914 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 16308 43 0 0 0 0 SRX024057 0.0 Metagenome 3300065528 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 802 in Cardston County, Alberta, Canada - S00JY_0412 Microbiome Insights 3300065528 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.264899 -113.060598 2400845 3819 16 0 26 0 0.0 Metagenome 3300046465 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_150610.NP1 DOE Joint Genome Institute (JGI) 3300046465 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 744438886 1574126 483 70 726 121 Unrestricted 11.99 Metagenome 3300036660 *Microbiome Permanent Draft Extreme environments viral communities from various locations Glacier ice viral communities from Ngari, Tibet, China - 28_GP2_128.6 NXT DOE Joint Genome Institute (JGI) 3300036660 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Ice Freshwater Glacier ice 35.2833 81.4833 273691492 553841 205 15 284 18 SRX8844160 Unrestricted 17.34 Metagenome 3300011783 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00669 Weill Cornell Medical College 3300011783 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.8 -73.94 41572281 58511 10 0 26 0 SRX822636 0.0 Metagenome 3300000551 *Microbiome Permanent Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Kansas Corn soil v2 (version 2) DOE Joint Genome Institute (JGI) 3300000551 Metagenome Analysis Velvet released based on JGI ITS No Yes janet.jansson@pnnl.gov Janet Jansson Yes 30158906 Environmental Terrestrial Unclassified Soil Grasslands Soil 39.211666 -96.594768 6.6 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300045979 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_7_A DOE Joint Genome Institute (JGI) 3300045979 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 225590054 253076 127 1 152 2 Restricted 108.49 Metagenome 3300006447 *Microbiome Permanent Draft Microbial communities from manure storage tank from Sherbrooke, QC, Canada Microbial communities from pig manure storage tank from Sherbrooke, QC, Canada, enriched culture A4 Agriculture and Agri-Food Canada 3300006447 Metagenome Analysis Trinity released per JGI data release policy No Yes jennifer.town@agr.gc.ca, Jennifer.town@agr.gc.ca Jennifer Town No Engineered Solid waste Unclassified Animal waste Unclassified Manure 45.4 -71.9 47352842 90250 66 4 122 7 0.0 Metagenome 7000000097 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160400887 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000097 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 13346352 29794 0 0 0 0 0.0 Metagenome 3300061124 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIF7SW no PMA treatment Jet Propulsion Laboratory, California Institute of Technology 3300061124 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 21402463 24879 20 5 13 8 SRX2249353, SRX3808541, SRX3808518, SRX2249349 0.0 Metagenome 3300042399 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR pl4 DOE Joint Genome Institute (JGI) 3300042399 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 662393461 1042972 266 69 380 87 Unrestricted 20.3 Metagenome 3300025748 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC087_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025748 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 39.88 -75.22 640699893 1138626 548 1 831 2 SRX2157903 Unrestricted 0.0 Metagenome 3300037118 *Microbiome Permanent Draft Understanding the reciprocal impacts of modified plant cell wall and associated microbiome Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-Control-R2 DOE Joint Genome Institute (JGI) 3300037118 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kalluriudayc@ornl.gov Udaya C. Kalluri No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 32.1348 -81.9657 459829747 442898 31 70 28 59 SRX8177073 Unrestricted 0.0 Metagenome 3300049911 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2019 IH01_27cm DOE Joint Genome Institute (JGI) 3300049911 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.358 19.047 634166188 965892 325 1 500 1 Restricted 18.57 Metagenome 3300051202 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Leeds, Wisconsin, USA - 121_757_WI_DR_0cm_c1_T0_16O DOE Joint Genome Institute (JGI) 3300051202 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 43.30485 -89.3309 616803931 1032044 267 1 481 5 Restricted 13.61 Metagenome 3300008096 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 765701615 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008096 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 242398633 323061 214 0 297 0 0.0 Metagenome 3300037165 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 E2 1-5 DOE Joint Genome Institute (JGI) 3300037165 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0467 559559749 1260319 314 66 560 102 SRX8143581 Unrestricted 7.15 Metagenome 3300029851 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37201 Beijing Genomics Institute (BGI) 3300029851 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 150794959 201584 145 1 211 0 0.0 Metagenome 3300007299 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 160765029 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007299 Metagenome Analysis SPADES 3.6.1 released per Rekha Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 178999590 250757 190 0 311 0 0.0 Metagenome 7000000252 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 158479027 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000252 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 137633241 227714 0 0 0 0 0.0 Metagenome 3300036964 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - AD1 43 II DOE Joint Genome Institute (JGI) 3300036964 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 456636272 830245 435 7 674 5 SRX8362183 Unrestricted 23.95 Metagenome 3300008631 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 250-2.7um, replicate a Georgia Genomics Facility 3300008631 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 305509197 393480 150 101 178 123 0.0 Metagenome 3300026951 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - Naphthalene biodegradation metagenome 13C5doseA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026951 Metagenome Analysis spades v. 3.11.1 Yes Yes elm3@cornell.edu Eugene Madsen Yes 30051558 Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.292222 -73.604444 46417840 112981 47 4 64 8 Unrestricted 0.0 Metagenome 3300021182 *Microbiome Permanent Draft Peat bog microbial communities from Stordalen Mire, Abisko, Sweden Fen microbial communities from Stordalen Mire, Abisko, Sweden - Day 0 Australian Centre for Ecogenomics 3300021182 Metagenome Analysis metaSPAdes released by JGI data releasing policy No Yes rich.270@osu.edu Virginia Rich No Environmental Terrestrial Peat Soil Fen fen 68.3531685 19.0467201 3615334300 9818524 1710 68 2611 122 0.0 Metagenome 3300003490 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN DOE Joint Genome Institute (JGI) 3300003490 Metagenome Analysis Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 177394727 408184 230 46 338 67 Unrestricted 0.0 Metagenome 3300005776 *Microbiome Permanent Draft Human lung microbial communities from healthy (non-smokers and smokers) and HIV infected subjects Human lung microbial communities from Normal Control Background 110228-1 New York University Langone Medical Center 3300005776 Metagenome Analysis Shotgun released per JGI data release policy No Yes leopold.segal@nyumc.org Leopoldo Segal No Host-associated Mammals: Human Lung Respiratory system Unclassified Lung Microbiome 40.7127 -74.0059 16605632 49108 1 2 1 1 0.0 Metagenome 3300005931 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK9 DOE Joint Genome Institute (JGI) 3300005931 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli, Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 332185299 824499 187 9 342 10 SRX2747200 Unrestricted 0.0 Metagenome 3300046811 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 soil DOE Joint Genome Institute (JGI) 3300046811 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.120945 -123.270302 5.14 949786831 1551253 312 24 502 37 Unrestricted 12.98 Metagenome 3300037822 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18B_5_4_4 mgh University of Alberta 3300037822 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 31348181 40276 10 1 11 1 0.0 Metagenome 3300027840 *Microbiome Permanent Draft Wetland sediment microbial communities from St. Louis River estuary, Michigan under dissolved organic matter induced mercury methylation Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027840 Metagenome Analysis spades v. 3.11.1 Yes Yes diana.nemergut@duke.edu.deleted Diana Nemergut Yes 29632744 Environmental Aquatic Wetlands Freshwater Sediment Wetland sediment 46.6972164 -92.3279105 1038959467 2359626 887 24 1599 39 SRX2775503 Unrestricted 0.0 Metagenome 3300003205 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06K4-12 DOE Joint Genome Institute (JGI) 3300003205 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 639074 2113 33 3 47 7 SRX2576205 Unrestricted 0.0 Metagenome 3300046537 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere DOE Joint Genome Institute (JGI) 3300046537 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.588 -123.1922 395911773 728209 272 12 520 15 Unrestricted 18.27 Metagenome 3300024472 *Microbiome Permanent Draft Permafrost microbial communities from glacier foreland in Svalbard, Norway Permafrost microbial communities from glacier foreland in Svalbard, Norway - ML303 KOREA POLAR RESEARCH INSTITUTE 3300024472 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes sarbjeet.niraula@mavs.uta.edu Sarbjeet Niraula No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 78.89638273 12.04760718 8.6 18928004 55381 76 6 98 13 0.0 Metagenome 3300026743 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A3-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300026743 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 21652836 74260 98 1 162 3 SRX1991111 Unrestricted 0.0 Metagenome 3300013499 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S17-02-D University of California, Los Angeles 3300013499 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 94866910 176465 92 0 160 0 SRX862793 0.0 Metagenome 3300000711 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 26 DOE Joint Genome Institute (JGI) 3300000711 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 11770306 34132 53 0 76 0 SRX4340645 Unrestricted 0.0 Metagenome 3300043027 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B5.9_Sample5.Rodeo9.Well1132 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043027 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 66273018 117160 92 0 153 0 SRX8355403 Unrestricted 180.44 Metagenome 7000000181 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 765013792 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000181 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 70820242 112483 0 0 0 0 0.0 Metagenome 3300021251 *Microbiome Permanent Draft Production water microbial communities from petroleum reservoir, Carmopolis, SE, Brazil - Ap1 Production water microbial communities from petroleum reservoir, Carmopolis, SE, Brazil - Ap1 National Laboratory for Scientific Computing (LNCC), Brazil 3300021251 Metagenome Analysis Geneious released by JGI data releasing policy No Yes lfagnez@ufrnet.br Lucymara Agnez-Lima No Environmental Terrestrial Unclassified Oil reservoir Unclassified production water -10.6453 -36.9891 825683360 3247426 5457 0 9685 16 0.0 Metagenome 3300006115 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jul09 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006115 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 308139511 807352 177 80 270 126 SRX2565198 Unrestricted 0.0 Metagenome 3300029458 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001919-113 Beijing Genomics Institute (BGI) 3300029458 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 107685324 128141 68 0 122 0 0.0 Metagenome 3300017619 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - S11-05 University of Michigan 3300017619 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.35212 -85.38545 10782041 14065 4 0 10 0 0.0 Metagenome 3300054038 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_10_150 re-annotation DOE Joint Genome Institute (JGI) 3300054038 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 339279184 596618 203 0 304 0 SRX3003287 0.0 Metagenome 3300006168 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t1_698P_inflammed - viral_metagenome University of Texas Southwestern Medical Center 3300006168 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 129369842 246117 108 0 129 0 0.0 Metagenome 3300045413 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Towuti Lake, South Sulawesi, Indonesia - Towuti_60m_2015 DOE Joint Genome Institute (JGI) 3300045413 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.7 121.4 610946439 1024639 326 17 513 32 Unrestricted 16.8 Metagenome 3300029737 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37286 Beijing Genomics Institute (BGI) 3300029737 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 183706594 234970 169 3 241 1 0.0 Metagenome 3300025349 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter B (PS_B) MetaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025349 Metagenome Analysis spades v. 3.11.1 Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Thermal spring 44.376 -110.69 80754650 111707 59 0 62 0 SRX2577285 Unrestricted 0.0 Metagenome 3300064803 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 595 in Falher, Alberta, Canada - S00JY_0760 Microbiome Insights 3300064803 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 55.45243753 -117.122471 34169588 49443 15 0 32 0 0.0 Metagenome 3300034517 *Microbiome Permanent Draft Microbial filament community from Gypsum Hill Spring, Axel Heiberg Island, Canada- A1 Saline springwater microbial filament community from Gypsum Hill Spring, Axel Heiberg Island, Canada - A1 The Hospital for Sick Children 3300034517 Metagenome Analysis MIRA v. 2.0 released by JGI data releasing policy Yes Yes elisse.magnuson@mail.mcgill.ca Elisse Magnuson No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified springwater 79.7583 -90.6598 4953077 7885 13 0 17 0 0.0 Metagenome 3300022588 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 9 Selected contigs with viral hallmark genes Autonomous University of Barcelona 3300022588 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 1684016 2537 0 0 0 0 0.0 Metagenome 3300042798 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S2_0_10 NMDC pilot DOE Joint Genome Institute (JGI) 3300042798 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228379 -119.2717467 16963779 51897 128 9 238 27 SRX2523282 0.0 Metagenome 3300021184 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20 DOE Joint Genome Institute (JGI) 3300021184 Metagenome Analysis spades v. 3.10.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.3049 -116.2547 596000187 1723296 1025 16 1965 35 SRX3936362 Unrestricted 12.59 Metagenome 3300025056 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - 3A3 metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025056 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; wswingley@niu.edu Ramunas Stepanauskas; Wesley Swingley No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 41.6655 -87.5437 13-14 15559117 31366 15 1 27 3 SRX3296546 Unrestricted 0.0 Metagenome 3300008483 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764083206 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008483 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 113378457 191093 73 0 103 1 0.0 Metagenome 7000000254 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159915365 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000254 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 8535196 17719 0 0 0 0 0.0 Metagenome 3300036962 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - SCT 28 I DOE Joint Genome Institute (JGI) 3300036962 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 1160577925 2324555 951 198 1469 328 SRX8361276 Unrestricted 8.96 Metagenome 3300020507 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 12SEP2008 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020507 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.099444 -89.404444 83144800 182197 86 26 137 28 SRX3310672 Unrestricted 0.0 Metagenome 3300028315 *Microbiome Permanent Draft Black smoker hydrothermal vent sediment microbial communities from the Guaymas Basin, Mid-Atlantic Ridge, South Atlantic Ocean Black smoker hydrothermal vent sediment microbial communities from the Guaymas Basin, Mid-Atlantic Ridge, South Atlantic Ocean - BSmoChi-MAR-TVG11 reanalysis Beijing Genomics Institute (BGI) 3300028315 Metagenome Analysis idba v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Hydrothermal vents Marine Black smokers hydrothermal vents -15.160005 -13.350021 4922220859 7761684 2063 42 3346 84 0.0 Metagenome 3300002931 *Microbiome Permanent Draft Cephalotes varians microbial communities from the Florida Keys, USA Ant worker gut metagenome for colony PL010 Harvard University 3300002931 Metagenome Analysis released by Yi Hu Yes Yes pl356@drexel.edu, yihu.bnu@gmail.com Piotr Lukasik, Yi Hu No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Cephalotes varians 25.2845833 -80.3122167 396700087 657022 129 13 176 31 0.0 Metagenome 3300013836 *Microbiome Permanent Draft Fecal viral communites from wild urban brown rats in Berlin, Germany Fecal viral communites from wild urban brown rats in Berlin, Germany - Mu/10/1789 Freie University Berlin 3300013836 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 52.529611 13.401343 987614 2538 3 0 3 0 SRX612958 0.0 Metagenome 3300009807 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S3_0_10 DOE Joint Genome Institute (JGI) 3300009807 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228508 -119.2716818 140458638 323642 215 22 450 23 SRX2522700 Unrestricted 0.0 Metagenome 3300024474 *Microbiome Permanent Draft Permafrost microbial communities from glacier foreland in Svalbard, Norway Permafrost microbial communities from glacier foreland in Svalbard, Norway - ML120 KOREA POLAR RESEARCH INSTITUTE 3300024474 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes sarbjeet.niraula@mavs.uta.edu Sarbjeet Niraula No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 78.9016 12.0728 8 27330602 79203 117 17 286 22 0.0 Metagenome 3300028368 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 3 #764 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028368 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 184654189 327529 114 14 174 33 SRX3241973 Unrestricted 0.0 Metagenome 3300039125 *Microbiome Permanent Draft Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA - kan2 University of Minnesota 3300039125 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic River Freshwater Unclassified Freshwater 44.917867 -93.128967 4505044 4758 5 0 3 0 0.0 Metagenome 3300038728 *Microbiome Permanent Draft Human fecal and environmental microbial communities from Peru and El Salvador Sewage microbial communities from Lima, Peru - SW183 Washington University in St. Louis 3300038728 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27172044 Engineered Wastewater Unclassified Sewage Unclassified Sewage -12.108 -77.056 72463915 140397 187 2 272 4 SRX1440999, SRX1441284 0.0 Metagenome 3300037459 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_4500m_C5_0cm5cm DOE Joint Genome Institute (JGI) 3300037459 Metagenome Analysis metaspades v. 3.13.0 Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 35.689 -123.0778 1514605587 2546069 506 6 793 9 SRX9141343 Unrestricted 17.72 Metagenome 3300026020 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_403 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026020 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 59114231 152444 129 4 253 2 SRX2564880, SRX2581046 Unrestricted 0.0 Metagenome 3300014843 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from two oxygen tension regimens in Lake Washington, USA Freshwater lake sediment microbial communities from low oxygen tension regimen in Lake Washington, USA - LO rep. 1 week 5 - L1_5_WGA University of Washington 3300014843 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 47.631156 -122.254601 14430969 23117 8 0 7 0 0.0 Metagenome 3300006036 *Microbiome Permanent Draft Mining for adhesins from protozoa-associated epibionts Protozoa-associated epibionts from sheep rumen, Palmerston North, New Zealand - no screen Leibniz Institute 3300006036 Metagenome Analysis Unknown released per JGI data release policy No Yes filomena.ng@agresearch.co.nz Filomena Ng No Host-associated Mammals Stomach Digestive system Rumen Rumen -40.355 175.6117 977631 3360 3 1 4 3 0.0 Metagenome 3300024293 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 63D DOE Joint Genome Institute (JGI) 3300024293 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 295861290 665866 186 6 320 16 SRX4466676 Unrestricted 20.85 Metagenome 3300037824 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18B_6_7_5 mgh University of Alberta 3300037824 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 83001471 107858 35 0 60 0 0.0 Metagenome 3300031262 *Microbiome Permanent Draft Characterization of microbial community from aquifers in Araihazar, Bangladesh Aquifer fluids microbial communities from Pleistocene sands, Araihazar, Bangladesh - CAT site, Well #24502 University of Manchester 3300031262 Metagenome Analysis IDBA-UD v. 1.1.3 released by JGI data releasing policy No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Aquatic Groundwater Freshwater Aquifer Aquifer fluid 23.79117 90.66017 344346227 579111 427 1 651 4 0.0 Metagenome 3300000983 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY69 J. Craig Venter Institute (JCVI) 3300000983 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 1000271158 3357739 81 44 249 47 0.0 Metagenome 3300056600 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.5C.10 SIP fraction DOE Joint Genome Institute (JGI) 3300056600 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 249204484 416018 228 27 435 40 Unrestricted 24.49 Metagenome 3300011543 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00813 Weill Cornell Medical College 3300011543 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.97 23317992 26857 8 0 12 0 SRX822779 0.0 Metagenome 3300070326 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_003-M-20180723-COMP-DNA1 3300070326 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 137870356 391943 138 5 284 7 0.0 Metagenome 3300031775 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 32315 DOE Joint Genome Institute (JGI) 3300031775 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Coastal Marine Unclassified seawater 36.7468 -122.0193 1827156550 4106377 1227 237 1941 433 SRX6423792 Unrestricted 14.19 Metagenome 3300022349 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL3WBGP3 JM63 AGRF 3300022349 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996531 115.533257 35934252 62000 36 0 60 0 0.0 Metagenome 3300045798 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - G2-R1-B DOE Joint Genome Institute (JGI) 3300045798 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3569 19.0504 146639274 335253 124 44 214 56 Unrestricted 6.38 Metagenome 3300025588 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 53-3 shallow-072012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025588 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 272039820 603904 133 28 228 35 SRX1987657 Unrestricted 0.0 Metagenome 3300014006 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100132 University of Pennsylvania 3300014006 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14263708 27710 3 6 8 8 SRX756400 0.0 Metagenome 3300028769 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N1_1 DOE Joint Genome Institute (JGI) 3300028769 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 488126057 1052720 547 90 876 139 SRX5355855 Unrestricted 0.0 Metagenome 3300002163 *Microbiome Permanent Draft Biogas fermentation microbial communities from biogas plants in Germany Biogas fermentation microbial communities from Germany - Plant 1 DNA1 DOE Joint Genome Institute (JGI) 3300002163 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes asczyrba@techfak.uni-bielefeld.de Alexander Sczyrba Yes 27462367 Engineered Bioreactor Digestate Anaerobic Unclassified Biogas fermentantion 52.0385 8.4956 7.7 498700252 994870 1138 14 1975 23 SRX1597948 Unrestricted 0.0 Metagenome 3300038329 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI151_2019_mar_60m DOE Joint Genome Institute (JGI) 3300038329 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 371523768 876622 361 87 591 159 SRX9402728 Unrestricted 9.39 Metagenome 3300061676 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0578 Microbiome Insights 3300061676 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 389974402 545760 154 4 224 8 0.0 Metagenome 3300009681 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC087_MetaG DOE Joint Genome Institute (JGI) 3300009681 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 39.88 -75.22 954724527 1678108 962 1 1522 6 SRX2157903 Unrestricted 0.0 Metagenome 3300046005 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater viral communities from Lake Mendota, Wisconsin, United States - ME_2020-09-11_15m_Virus_AB DOE Joint Genome Institute (JGI) 3300046005 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 465386873 875275 133 11 201 17 Unrestricted 56.53 Metagenome 3300069218 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Lower Teakettle, Sierra National Forest, California, USA - TEAK_002-O-20210720-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069218 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 36.978454 -119.035693 1579799549 3644265 1121 164 2035 262 0.0 Metagenome 3300033815 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Sediment microbial communities from East River floodplain, Colorado, United States - 31_s17 DOE Joint Genome Institute (JGI) 3300033815 Metagenome Analysis spades v. 3.13.0 Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Aquatic Sediment Floodplain Unclassified sediment 38.9229 -106.9499 416970063 1150141 439 10 755 16 SRX7631469 Unrestricted 7.88 Metagenome 3300014937 *Microbiome Permanent Draft Human fecal microbial community of Hadza hunter-gatherer and regular subjects from Tanzania and Italy Human fecal microbial community of Hadza hunter-gatherer populations from Tanzania - 10004 University of Bologna 3300014937 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal -3.6347588 35.0828588 61355099 122176 76 2 132 3 0.0 Metagenome 3300044302 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T88 D DOE Joint Genome Institute (JGI) 3300044302 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7692 -64.3744 426591858 1022235 22 1 38 3 Unrestricted 41.27 Metagenome 3300057059 *Microbiome Permanent Draft Metagenomes from methanogenic benzene-degrading cultures Lab enriched sediment microbial communities from hydrocarbon-contaminated retail site, Toronto, Canada - Cartch44A2 msp McGill University and Genome Quebec Innovation Centre 3300057059 Metagenome Analysis Spades v. 3.14.1 Yes Yes elizabeth.edwards@utoronto.ca; camillaln@gmail.com Elizabeth A. Edwards; Camilla Nesb? No Engineered Lab enrichment Anaerobic media Defined media Unclassified sediment 43.6535 -79.3839 104388897 251779 75 0 168 0 0.0 Metagenome 3300056904 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F1L_60_62 DOE Joint Genome Institute (JGI) 3300056904 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.95358208 -81.6734609 1632018508 2417072 766 2 1203 0 Unrestricted 13.41 Metagenome 3300007912 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 763435843 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007912 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 14358697 17279 8 2 14 3 SRX024081, SRX098542 0.0 Metagenome 3300001927 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Polynesia - GS044 J. Craig Venter Institute (JCVI) 3300001927 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Oceanic Marine Unclassified Marine -8.415 -124.23972 562395 1015 0 0 1 0 0.0 Metagenome 3300025171 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - JTO19cm metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025171 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; wswingley@niu.edu Ramunas Stepanauskas; Wesley Swingley No Environmental Aquatic Creek Freshwater Unclassified Freshwater 41.6655 -87.5437 13-14 81109078 218547 159 10 269 22 SRX3296548 Unrestricted 0.0 Metagenome 3300037337 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Lake McCallum #995 DOE Joint Genome Institute (JGI) 3300037337 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.6271 78.0169 388822934 723552 121 43 141 51 SRX9378919 Unrestricted 25.11 Metagenome 3300069265 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Chase Lake Wetlands, North Dakota, USA - WOOD_024-O-20210714-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069265 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 47.151171 -99.262648 4031167003 8439083 2134 45 3784 94 0.0 Metagenome 3300035527 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B1.3_Sample1.Rodeo3.Well1210 DOE Joint Genome Institute (JGI) 3300035527 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 399788828 672719 361 0 554 0 SRX8347254 Unrestricted 35.67 Metagenome 3300048078 *Microbiome Permanent Draft Marine and freshwater sediment microbial communities from various locations Freshwater sediment microbial communities from lake in Powell, Michigan, United States - Canyon_Lake_HM 20 DOE Joint Genome Institute (JGI) 3300048078 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes smtechtm@mtu.edu Stephen Techtmann No Environmental Aquatic Sediment Freshwater Unclassified Freshwater sediment 46.8318 -87.9196 417576098 1340378 686 66 1115 114 Unrestricted 5.37 Metagenome 3300029119 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021211-26 Beijing Genomics Institute (BGI) 3300029119 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 184294213 242169 165 0 266 0 0.0 Metagenome 3300053753 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FL_03 DOE Joint Genome Institute (JGI) 3300053753 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.407926 -82.180036 163227669 252005 7 8 17 7 Restricted 252.71 Metagenome 3300027285 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepC_8d DOE Joint Genome Institute (JGI) 3300027285 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 139809946 250261 93 8 147 15 SRX5245292 Unrestricted 23.06 Metagenome 3300045501 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-535 Genome Quebec 3300045501 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 55.4549 -129.36962 1032584471 2341750 481 190 809 313 0.0 Metagenome 3300042979 *Microbiome Permanent Draft Soil microbial communities from Wonju, South Korea Soil microbial communities from Wonju, South Korea - C3 Macrogen Inc 3300042979 Metagenome Analysis MEGAHIT v. 2.4.2 No Yes mistiers2@gmail.com Jin-Kyung Hong No Environmental Terrestrial Unclassified Soil Unclassified Soil 37.28443 127.91195 173670679 208893 28 2 38 1 0.0 Metagenome 3300029593 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36011 Beijing Genomics Institute (BGI) 3300029593 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 157519026 198354 121 0 176 0 0.0 Metagenome 3300049783 *Microbiome Permanent Draft Seawater and ice microbial communities from Arctic Ocean Melted sea ice microbial communities from Arctic Ocean - MOSAiC PS122_414 DOE Joint Genome Institute (JGI) 3300049783 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Sea ice 87.4122 93.2151 1338771991 1829886 473 201 596 255 Unrestricted 0.0 Metagenome 3300051204 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Leeds, Wisconsin, USA - 129_781_WI_T0_1m_DR_c3_T0_16O DOE Joint Genome Institute (JGI) 3300051204 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 43.30485 -89.3309 1157993608 1885404 396 9 667 13 Restricted 13.86 Metagenome 3300045399 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-538 Genome Quebec 3300045399 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 54.398593 -126.023267 1217699037 2682529 503 159 849 242 0.0 Metagenome 3300011911 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00474 Weill Cornell Medical College 3300011911 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.8 -73.94 61931308 96349 25 0 42 0 SRX822443 0.0 Metagenome 3300022748 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MG DOE Joint Genome Institute (JGI) 3300022748 Metagenome Analysis spades v. 3.11.1-check Yes Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9266 -83.4611 360831329 706865 346 17 496 23 SRX4479288 Unrestricted 25.48 Metagenome 3300061122 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIF8SW no PMA treatment Jet Propulsion Laboratory, California Institute of Technology 3300061122 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 22410668 41977 26 6 28 12 SRX2249351, SRX2249348, SRX3808517, SRX3808506 0.0 Metagenome 3300048597 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Sediment microbial communities from freshwater wetland near Golden, Golorado, USA - GV_MinesPark_1 DOE Joint Genome Institute (JGI) 3300048597 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Wetlands Freshwater Sediment Sediment 39.74466208 -105.2240163 1705603781 2416890 455 110 594 129 Unrestricted 23.14 Metagenome 3300028787 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381 DOE Joint Genome Institute (JGI) 3300028787 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92048757 -106.94878552 726697207 1763444 344 4 636 4 SRX5355419 Unrestricted 12.16 Metagenome 3300017786 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 47 SPOT_SRF_2013-09-18 DOE Joint Genome Institute (JGI) 3300017786 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 772585133 1771995 203 57 458 90 SRX7207532, SRX7207531 Unrestricted 0.0 Metagenome 3300013101 *Microbiome Permanent Draft Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay4, Core 4569-4, 0-3 cm DOE Joint Genome Institute (JGI) 3300013101 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nd.microbiota@gmail.com Nina Dombrowski Yes 30479325 Environmental Aquatic Hydrothermal vents Marine Sediment marine sediment 27.0151 -111.3798 2743914677 5654430 1823 21 3139 39 SRX3568777 Unrestricted 7.61 Metagenome 3300041025 *Microbiome Draft FORHOT Natural soil warming experiment in Iceland Soil microbial communities from grassland in Hveragerdi, Iceland - GN2-A Biomedical Sequencing Facility, Vienna Austria 3300041025 Metagenome Analysis spades v. 3.13.1 released by JGI data releasing policy Yes Yes craig.herbold@microbial-ecology.net Craig Herbold No Environmental Terrestrial Unclassified Soil Grasslands Soil 64.025 -21.205 381528969 566823 71 9 104 11 0.0 Metagenome 3300064758 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 590 in Spirit river, Alberta, Canada - S00JY_0800 Microbiome Insights 3300064758 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 56.14294627 -117.3944095 4158115 6846 14 0 37 0 0.0 Metagenome 3300000893 *Microbiome Draft Forest soil microbial communities from Amazon Forest, Brazil Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001 DOE Joint Genome Institute (JGI) 3300000893 Metagenome Analysis released based on JGI ITS Yes Yes jorge@uta.edu, jmrodrigues@ucdavis.edu Jorge Rodrigues, Jorge L. Rodrigues Yes 30083144 Environmental Terrestrial Tropical forest Soil Bulk soil Forest soil -10.171667 -62.7875 176302076 437816 463 15 712 31 Unrestricted 0.0 Metagenome 3300044228 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T40 S DOE Joint Genome Institute (JGI) 3300044228 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7008 -64.2497 317858574 750127 22 0 31 2 Unrestricted 40.09 Metagenome 3300036769 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - Beaver2Rectum1 DOE Joint Genome Institute (JGI) 3300036769 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Rectum rectum 49.18 -122.54 2252096104 3461185 828 33 1361 64 SRX8345783 Unrestricted 6.74 Metagenome 3300026329 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_02_30cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026329 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 648845737 1106235 348 13 622 15 SRX2727710 Unrestricted 0.0 Metagenome 3300038583 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A35_35cm_0M University of Tennessee 3300038583 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 101087364 231203 89 0 221 2 SRX710563 0.0 Metagenome 3300007318 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 158742018 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007318 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 74201090 109408 63 0 85 0 0.0 Metagenome 3300048770 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 S1 10-14 DOE Joint Genome Institute (JGI) 3300048770 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.0474 414853959 578003 116 3 145 6 Restricted 20.6 Metagenome 3300069413 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_021-O-20170619-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069413 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 25948888 72357 139 11 263 26 0.0 Metagenome 3300007365 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 765640925 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007365 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 6409804 10786 9 0 12 0 SRX025186 0.0 Metagenome 3300044908 *Microbiome Permanent Draft Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA - PH 28 years plot 5 DOE Joint Genome Institute (JGI) 3300044908 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes luizdomeignoz@gmail.com Luiz Domeignoz Horta No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 42.303 -72.1228 1102616977 1823855 276 49 467 75 SRX15792992 Unrestricted 15.04 Metagenome 3300001683 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from Guaymas Basin, Pacific Ocean Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly 3300001683 Metagenome Analysis IDBA Public release per request from Karthik Anantharaman (April 15, 2014) No Yes gdick@umich.edu Gregory Dick Yes 24789974 Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 27.015833 -111.425 572189614 955942 507 74 821 129 0.0 Metagenome 3300070361 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Alaska, USA - DEJU_046-O-20180621-COMP-DNA1 3300070361 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 39800794 115256 109 52 203 73 0.0 Metagenome 3300014241 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 205_D1_2014-5-28 San Diego State University 3300014241 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 1348179 5324 11 4 17 6 0.0 Metagenome 7000000592 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160704339 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000592 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 63441503 115673 0 0 0 0 0.0 Metagenome 3300024891 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 8_HOW4 (SPAdes) DOE Joint Genome Institute (JGI) 3300024891 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 68491498 117081 44 0 57 0 SRX2720109 Unrestricted 0.0 Metagenome 3300007559 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541 DOE Joint Genome Institute (JGI) 3300007559 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 267094883 587733 215 33 309 55 SRX2753583 Unrestricted 6.37 Metagenome 3300035363 *Microbiome Permanent Draft Gut microbial communities from Plutella xylostella in Fujian, Fuzhou, China Gut microbial communities from Plutella xylostella in Fujian, Fuzhou, China - pupa gut Fujian Academy of Agricultural Sciences 3300035363 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Gut 26.08 119.28 17048295 21487 2 1 3 4 SRX1421495 0.0 Metagenome 3300025723 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE03Jun09 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025723 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 512472479 1041096 139 86 234 98 SRX2565338 Unrestricted 0.0 Metagenome 3300033426 *Microbiome Permanent Draft Wetland soil microbial communities from various locations Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - Kosokonia_enrichment_stock DOE Joint Genome Institute (JGI) 3300033426 Metagenome Analysis spades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified soil 41.3777 -82.5117 6756917 11081 18 2 25 6 SRX6871072 Unrestricted 9851.19 Metagenome 2051223009 *Microbiome Permanent Draft Human fecal microbial communities from Orebro University Hospital, Sweden, of individuals with Crohns disease Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10376 University of Maryland School of Medicine 2051223009 Metagenome Analysis released per JGI data release policy No Yes cmfraser@som.umaryland.edu Claire Fraser No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 59.274717 15.230656 17109107 32563 0 0 0 0 0.0 Metagenome 3300032022 *Microbiome Permanent Draft Microbial communities from the deep biosphere Mediterranean forest soil microbial communities from Voltri Massif, Liguria, Italy - LIG_BR2upA_2013 re-assembly Marine Biological Laboratory 3300032022 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Temperate forest Soil Bulk soil Mediterranean forest soil 44.4512 8.782 392987695 1414318 575 107 1212 293 SRX748865 0.0 Metagenome 3300014114 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room gowning area microbial communities from NASA Jet Propulsion Laboratory, California, USA - Floor swab, replicate B SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300014114 Metagenome Analysis SPAdes v3.10.0 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1991 -118.1715 2120967 4222 2 0 3 1 Unrestricted 0.0 Metagenome 3300050495 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation DOE Joint Genome Institute (JGI) 3300050495 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Host-associated Plants Endosphere Roots Unclassified Populus endosphere 35.8444 -83.9599 1162298517 3113792 784 44 1423 81 SRX2748475 0.0 Metagenome 3300035024 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - C3-0 Autonomous University of Barcelona 3300035024 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 105402338 433368 1003 0 1902 0 0.0 Metagenome 3300012503 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.5.old.080610_R DOE Joint Genome Institute (JGI) 3300012503 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 136266276 365189 272 25 595 54 SRX3527334 Unrestricted 0.0 Metagenome 3300003234 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-D DOE Joint Genome Institute (JGI) 3300003234 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 1421077 4290 15 3 34 4 SRX2575851 Unrestricted 0.0 Metagenome 3300036787 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-1-X2 DOE Joint Genome Institute (JGI) 3300036787 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0474 374549618 549012 113 1 148 2 SRX8137205 Unrestricted 29.14 Metagenome 3300021591 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-11-12_MG DOE Joint Genome Institute (JGI) 3300021591 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.0114 -110.5956 129332765 319226 165 0 321 2 SRX3982282 Unrestricted 21.05 Metagenome 3300041781 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - C_29_wk_2 DOE Joint Genome Institute (JGI) 3300041781 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9346 -107.011 98373432 303632 225 18 428 24 SRX14808253 Unrestricted 7.88 Metagenome 3300027856 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_23 DOE Joint Genome Institute (JGI) 3300027856 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Inlet Marine Unclassified seawater 50.0528611 -123.8211389 1341344009 3112359 900 24 1568 48 SRX5244016 Unrestricted 9.21 Metagenome 3300002247 *Microbiome Permanent Draft Nitrate-dependent Fe(III)-oxidizing enrichment culture microbial communities Fe(III)-oxidizing enrichment culture microbial communities from the University of Tubingen, Germany - Straub Culture 3300002247 Metagenome Analysis Public release - Shaomei He (Feb 25, 2016) Yes Yes eroden@geology.wisc.edu Eric Roden No Engineered Lab enrichment Unclassified Unclassified Unclassified Nitrate-dependent Fe(III)-oxidizing enrichment culture 48.529499 9.043747 15029535 25347 14 0 18 0 0.0 Metagenome 3300012124 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Georgia, USA - TSGA060 MetaG DOE Joint Genome Institute (JGI) 3300012124 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 33.0837 -81.7707 122819642 214041 20 55 32 122 SRX3539657 Unrestricted 0.0 Metagenome 3300034012 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027 DOE Joint Genome Institute (JGI) 3300034012 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1171815873 2256311 533 107 818 195 SRX7621632 Unrestricted 10.87 Metagenome 3300024981 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_750_plan (SPAdes) DOE Joint Genome Institute (JGI) 3300024981 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 280969762 376063 142 23 155 35 SRX2770514 Unrestricted 0.0 Metagenome 3300017710 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 26 SPOT_SRF_2011-09-28 DOE Joint Genome Institute (JGI) 3300017710 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 234106830 564677 59 49 73 102 SRX7207390, SRX7207391 Unrestricted 0.0 Metagenome 3300028962 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 53_B Beijing Genomics Institute (BGI) 3300028962 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 22240684 22893 17 0 24 0 ERX491189 0.0 Metagenome 3300024498 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Atlam_RepA_8h DOE Joint Genome Institute (JGI) 3300024498 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 100335601 224516 101 6 165 12 SRX4547479 Unrestricted 15.72 Metagenome 3300026728 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN412 (SPAdes) DOE Joint Genome Institute (JGI) 3300026728 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Soil 44.20517707 -122.1284473 18697796 61540 89 3 134 3 SRX3311836 Unrestricted 0.0 Metagenome 3300022664 *Microbiome Permanent Draft Biofilm microbial communities from lab-scale anaerobic bioreactors in Urbana, Illinois, USA Biofilm microbial communities from GAC-packed anaerobic bioreactor in Urbana, Illinois, USA - CM3 University of Illinois, Urbana-Champaign 3300022664 Metagenome Analysis SPAdes v. 3.11.1 released by JGI data releasing policy Yes Yes r.mei@aist.go.jp Ran Mei No Engineered Bioreactor Biofilm Anaerobic Unclassified biofilm 40.12 -88.2 576473658 685477 225 5 256 3 0.0 Metagenome 3300020180 *Microbiome Permanent Draft Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.SP4.G1 DOE Joint Genome Institute (JGI) 3300020180 Metagenome Analysis spades v. 3.10.1 Yes Yes dysumner@ucdavis.edu Dawn Sumner No Environmental Aquatic Lake Freshwater Microbial mats freshwater microbial mat -77.5281 161.59 1101363576 1988765 711 85 1119 136 SRX3539186 Unrestricted 23.2 Metagenome 3300043522 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime ecozone, Canada - Lake 07-239 Genome Quebec 3300043522 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.692693 -63.553527 979310682 2135980 449 121 720 229 0.0 Metagenome 3300025662 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI073_LV_135m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025662 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 411257702 826539 297 17 428 20 Unrestricted 0.0 Metagenome 3300005427 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65 DOE Joint Genome Institute (JGI) 3300005427 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 654127481 1614530 621 6 1035 16 SRX2782344 Unrestricted 0.0 Metagenome 3300028042 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in the Atlantic and Pacific Ocean Mussel associated microbial communities from hydrothermal vent at the East Pacific Rise, Pacific Ocean - Mussels DOE Joint Genome Institute (JGI) 3300028042 Metagenome Analysis spades v. 3.11.1 Yes Yes pgirguis@oeb.harvard.edu Peter Girguis No Host-associated Mollusca Unclassified Shell Unclassified mussel surface 9.8441 -104.2967 626608301 1191976 404 20 618 33 SRX5246517 Unrestricted 13.64 Metagenome 3300045774 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - S1-R3-B DOE Joint Genome Institute (JGI) 3300045774 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3555 19.0475 419316620 867736 258 29 401 49 Unrestricted 7.75 Metagenome 3300042218 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D154_2 DOE Joint Genome Institute (JGI) 3300042218 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 149113570 206238 96 11 138 15 Unrestricted 78.19 Metagenome 3300042772 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N2_40_50 NMDC pilot DOE Joint Genome Institute (JGI) 3300042772 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380273 -119.2723038 77783677 206826 128 1 259 1 SRX2523198 0.0 Metagenome 3300000627 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 18AUG2009 epilimnion DOE Joint Genome Institute (JGI) 3300000627 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300020462 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001559 (ERX556040-ERR598986) CEA Genoscope 3300020462 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 36.2108 -28.7989 1431256430 3584577 718 109 1221 241 0.0 Metagenome 3300052303 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Colorado, USA - BV_C3_S1 DOE Joint Genome Institute (JGI) 3300052303 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 40.984006 -106.632067 491783714 819890 260 59 474 98 Unrestricted 19.73 Metagenome 3300019479 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Enriched soil microbial communities from Sao Paulo Zoo composting, Sao Paulo, Brazil - thermophilic consortium ZCTH06_Soil Center for Advanced Technologies in Genomics, Sao Paulo University 3300019479 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Engineered Lab enrichment Unclassified Defined media Unclassified soil -23.651072 -46.620675 12784937 16601 22 0 24 0 0.0 Metagenome 3300027977 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_12m DOE Joint Genome Institute (JGI) 3300027977 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater 39.9879 -1.8737 858480986 1415210 413 69 542 101 SRX5248805 Unrestricted 28.89 Metagenome 3300045090 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_4_E DOE Joint Genome Institute (JGI) 3300045090 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 161128775 201742 89 1 113 2 Unrestricted 101.61 Metagenome 3300020004 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - H1a2 DOE Joint Genome Institute (JGI) 3300020004 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9763 -107.0041 432666188 932296 277 24 591 35 SRX3959608, SRX3959609 Unrestricted 0.0 Metagenome 3300030095 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_025 - TARA_E500000306 CEA Genoscope 3300030095 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Data public in NCBI; IMGSUPP-3063 (SM 11.4.2020) Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.3991 19.3997 325084142 607902 53 1 75 1 0.0 Metagenome 3300000291 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM293 Beijing Genomics Institute (BGI), Macrogen 3300000291 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 59577797 79762 246 4 326 12 0.0 Metagenome 3300042265 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D206_3 DOE Joint Genome Institute (JGI) 3300042265 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 205843180 299179 151 8 216 12 Unrestricted 94.51 Metagenome 3300060731 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Chase Lake Wetlands, North Dakota, USA - WOOD_043-M-20210712-comp-1 DOE Joint Genome Institute (JGI) 3300060731 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 47.131002 -99.242763 1787723992 3068467 590 18 1083 20 Unrestricted 18.82 Metagenome 3300009470 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, surface; DNA IDBA-UD Marine Biological Laboratory 3300009470 Metagenome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes jhuber@mbl.edu, jhuber@mbl.edu; jhuber@whoi.edu Huber, Huber; Julie Huber No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 7.4 303058717 645876 193 91 350 119 0.0 Metagenome 3300025807 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_160m (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025807 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; sean.crowe@ubc.ca; jkjarett@lbl.gov Ramunas Stepanauskas; Sean Crowe; Jessica Jarett No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.0288 29.1756 311945420 655304 313 1 551 3 SRX3571189 Unrestricted 19.16 Metagenome 3300003582 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI072_LV_200m_DNA DOE Joint Genome Institute (JGI) 3300003582 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 237008777 466355 225 2 442 3 Unrestricted 0.0 Metagenome 3300043750 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Para, Brazil - FS15 DOE Joint Genome Institute (JGI) 3300043750 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -2.7058 -54.7868 930690441 2366436 466 5 890 16 Unrestricted 8.36 Metagenome 3300045608 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_CSTR_000 DOE Joint Genome Institute (JGI) 3300045608 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 863505928 1777734 1002 22 1490 28 SRX12654481 Unrestricted 11.48 Metagenome 3300040136 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 068_R1_022417 University of Maryland 3300040136 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.53594 19.0176 11111109 14617 30 1 55 1 0.0 Metagenome 3300045487 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Cordillera ecozone, Canada - Lake 13-588 Genome Quebec 3300045487 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 59.979224 -127.55746 1218620774 2825282 684 202 1065 392 0.0 Metagenome 3300028891 *Microbiome Permanent Draft Seawater microbial communities from Yap Trench, western Pacific Ocean Seawater microbial communities from Yap Trench, western Pacific Ocean - 37I-Yap-CTD02-30m 2000bp_Newsun Novogene 3300028891 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes newsun1987@126.com Xinxu Zhang No Environmental Aquatic Ocean trench Marine Unclassified seawater 9.87 138.5 158368512 187681 92 1 95 0 0.0 Metagenome 3300009056 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3 DOE Joint Genome Institute (JGI) 3300009056 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2327 -123.9168 338918684 712673 386 40 619 74 SRX2753610 Unrestricted 0.0 Metagenome 3300048908 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 DOE Joint Genome Institute (JGI) 3300048908 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Rhizoplane Roots Unclassified Rhizoplane soil 42.40581 -85.40228 1645721987 2665538 566 61 893 80 Unrestricted 13.55 Metagenome 3300069300 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_004-M-20210726-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069300 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 40.043059 -105.581501 3907499497 8702104 1463 208 2760 301 0.0 Metagenome 3300070382 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_010-O-20160803-COMP-DNA1 3300070382 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 392552 1437 20 2 35 12 0.0 Metagenome 3300056790 *Microbiome Permanent Draft Mealworm larvae gut microbial communities from Newark, Delaware, USA Mealworm larvae gut microbial communities from Newark, Delaware, USA - Gut-D30_LDPE (version 2) DOE Joint Genome Institute (JGI) 3300056790 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes blenner@udel.edu Mark Blenner No Host-associated Arthropoda: Insects Gut Larva Unclassified Mealworm larvae gut 39.663708 -75.755838 226928549 224981 255 5 251 15 Unrestricted 63.49 Metagenome 3300030334 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_070 - TARA_R100001039 CEA Genoscope 3300030334 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -20.4075 -3.1641 156849814 248108 52 0 85 0 0.0 Metagenome 3300044770 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_188 DOE Joint Genome Institute (JGI) 3300044770 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 482881236 1184383 387 11 729 23 Unrestricted 7.2 Metagenome 3300011557 *Microbiome Permanent Draft Permafrost microbial communities from the Kolyma-Indigirka Lowland, Siberia, Russia Permafrost microbial communities from the Kolyma-Indigirka Lowland, Siberia, Russia - IC8_1M_join_R1 Institute of Physicochemical and Biological Problems in Soil Science 3300011557 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 68.716667 158.9 11064975 35091 8 1 28 3 SRX751044 0.0 Metagenome 3300042009 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z071817_5348 DOE Joint Genome Institute (JGI) 3300042009 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.201 -97.9447 293361559 737292 379 43 685 58 SRX14829043 Unrestricted 14.05 Metagenome 3300000059 *Microbiome Draft Panchlora sp. gut microbial communities from Gamboa, Panama Panchlora gut microbial communities from Gamboa, Panama - Panchlora_hindgut_metagenome v2 (version 2) DOE Joint Genome Institute (JGI) 3300000059 Metagenome Analysis Soap denovo, Newbler and minimus released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie Yes 28545131 Host-associated Arthropoda: Insects Hindgut Digestive system Unclassified Panchlora sp. gut 9.116667 -79.7 600271525 1179252 723 5 1375 11 Unrestricted 0.0 Metagenome 3300011385 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01525 Weill Cornell Medical College 3300011385 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.99 13167593 21865 30 0 29 0 SRX823401 0.0 Metagenome 3300002737 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA DOE Joint Genome Institute (JGI) 3300002737 Metagenome Analysis Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.9082 -79.0499 118438046 171809 76 0 146 0 SRX1991097 Unrestricted 0.0 Metagenome 3300013877 *Microbiome Permanent Draft Microbial communities from methanogenic microcosms from oil petroleum samples laboratory microbial enrichments from Reconcavo Basin petroleum reservoir, Newcastle Upon Tyne, UK - 15 gl 50C L2 15gl 50C L2 UNIVERSIDADE DE SAO PAULO 3300013877 Metagenome Analysis METASPADES k=79 No Yes inatalia.sierra@gmail.com Isabel Natalia Sierra Garcia No Engineered Lab enrichment Anaerobic media Defined media Unclassified Laboratory microcosms 54.97825278 -1.61778056 25486604 43463 33 0 47 2 0.0 Metagenome 3300017663 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - G13-07 University of Michigan 3300017663 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.39651 -85.40936 23229593 34812 7 0 8 0 0.0 Metagenome 3300006077 *Microbiome Permanent Draft Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea - fluid B Max Planck Institute for Plant Breeding Research 3300006077 Metagenome Analysis idba_ud v 1.1.1 released per JGI data release policy Yes Yes dmeier@mpi-bremen.de, dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Hydrothermal vents Marine Diffuse flow diffuse hydrothermal fluid -3.7992608 152.1013353 528852717 771392 406 24 564 36 0.0 Metagenome 7000000307 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 550534656 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000307 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 18973597 35645 0 0 0 0 0.0 Metagenome 3300027123 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepA_8d DOE Joint Genome Institute (JGI) 3300027123 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 118875810 223048 94 12 158 20 SRX5245192 Unrestricted 13.62 Metagenome 3300019764 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_6_MG DOE Joint Genome Institute (JGI) 3300019764 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Microbial mats Freshwater microbial mat 38.7906 -75.1644 364572675 703001 763 34 1161 42 SRX3982604 Unrestricted 9.33 Metagenome 3300010050 *Microbiome Permanent Draft Microbial community associated with xenic strain of Nostoc sp. EX-5-1 Microbial community associated with xenic strain of Nostoc sp. EX-5-1 Oregon State University 3300010050 Metagenome Analysis Spades 3.8 released per JGI data release policy No Yes benjamin.philmus@oregonstate.edu Benjamin Philmus No Host-associated Microbial Unclassified Bacteria Unclassified xenic strain 138932135 182664 57 4 69 4 0.0 Metagenome 3300032010 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22 DOE Joint Genome Institute (JGI) 3300032010 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1200611776 2910833 436 7 700 19 SRX5820392 Unrestricted 11.9 Metagenome 3300049139 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S16_C_D89 hydrophilic DOE Joint Genome Institute (JGI) 3300049139 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 612041515 1160516 395 25 641 38 Unrestricted 32.13 Metagenome 3300014857 *Microbiome Permanent Draft Human bile duct microbial communities from gallstone patients in Hangzhou, China Human bile duct microbial communities from gallstone patients in Hangzhou, China - B6_bile Beijing Institution of Radiation Medicine 3300014857 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Biliary tract Digestive system Bile ducts: Bile Human bile duct 3468581 6132 0 3 0 5 SRX957024, SRX957037 0.0 Metagenome 3300049666 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A4_B_2_control DOE Joint Genome Institute (JGI) 3300049666 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 119269735 272294 246 18 524 29 Unrestricted 13.24 Metagenome 3300002458 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Oil sands microbial communities from Horse River, Alberta, Canada - outcrops McGill University 3300002458 Metagenome Analysis released per JGI data release policy No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Environmental Terrestrial Sand Soil Oil-contaminated Hydrocarbon resource environments 56.70268 -111.398858 0 0 0 0 0 0 0.0 Metagenome 3300040408 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Desert Southwest, AZ, USA - SRER_001-M-20170815-COMP-DNA1 Battelle Memorial Institute 3300040408 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.91068 -110.83549 5081500 14095 14 5 44 10 0.0 Metagenome 3300008306 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764305738 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008306 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 90090399 159824 92 0 146 0 0.0 Metagenome 3300040687 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Temperate deciduous broadleaf forest soil microbial communities from Baltimore, USA - 014_R1_022417 University of Maryland 3300040687 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate deciduous broadleaf forest soil 39.48118333 -76.6888 1197258 3991 6 1 25 3 0.0 Metagenome 3300028498 *Microbiome Permanent Draft Glacial microbial communities from Tirich Mir Glacier, Hindukush range Chitral, Pakistan Glacial sediment microbial communities from Tirich Mir Glacier, Hindukush range Chitral, Pakistan - T08 T08 University of Bristol 3300028498 Metagenome Analysis SPAdes v. 3.11.1 released by JGI data releasing policy No Yes mr14311@my.bristol.ac.uk Muhammad Rafiq No Environmental Aquatic Ice Freshwater Glacier Glacial muddy surface ice 36.3272 71.8944 7 131342471 152449 18 7 12 8 0.0 Metagenome 3300024962 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 68_HOW9 (SPAdes) DOE Joint Genome Institute (JGI) 3300024962 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 89435300 146995 52 8 76 7 SRX2720762 Unrestricted 0.0 Metagenome 3300027504 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027504 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 216256371 545506 283 96 522 158 SRX3311939 Unrestricted 0.0 Metagenome 3300028981 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 345_B Beijing Genomics Institute (BGI) 3300028981 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 35911006 40657 25 0 34 0 ERX491101 0.0 Metagenome 3300009171 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm May2015 DOE Joint Genome Institute (JGI) 3300009171 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wilkins.231@osu.edu, mike.wilkins@colostate.edu Michael Wilkins No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0991 -99.1044 927082253 1817563 739 6 1339 6 SRX2753784 Unrestricted 0.0 Metagenome 3300043510 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-375 Genome Quebec 3300043510 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 53.939715 -114.321366 1203675504 2801260 557 134 824 197 0.0 Metagenome 3300070874 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_004-M-20200803-COMP-DNA1 Battelle Memorial Institute 3300070874 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12584 -99.253801 6.87-7.29 10365011 32038 31 3 61 2 0.0 Metagenome 3300026270 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026270 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 433521902 1050349 298 14 584 30 SRX2782444 Unrestricted 0.0 Metagenome 3300034020 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055 DOE Joint Genome Institute (JGI) 3300034020 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1345020384 2535405 669 145 1077 264 SRX7621689 Unrestricted 10.87 Metagenome 3300000105 *Microbiome Draft Soil microbial communities from the Kellog Biological Station, Michigan, US, in response to alternate cropping systems KBS GLBRC Intensive site T1R1 Sept09 v1 DOE Joint Genome Institute (JGI) 3300000105 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes tschmidt@msu.edu Thomas Schmidt, Thomas M. Schmidt No Environmental Terrestrial Unclassified Soil Unclassified Soil 42.405849 -85.384504 24047474 67764 243 42 440 57 Unrestricted 0.0 Metagenome 3300025681 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_100m (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025681 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 452521209 896671 303 14 420 34 Unrestricted 0.0 Metagenome 3300024042 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant dump, University of Wisconsin, Madison, United States - 2B5A (version 2) DOE Joint Genome Institute (JGI) 3300024042 Metagenome Analysis spades v. 3.11.1 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0758 -89.4125 101756696 145281 52 1 75 0 SRX4821866 Unrestricted 0.0 Metagenome 3300033391 *Microbiome Permanent Draft Metagenomic SGS 2x251 Riparian soil bacterial communities from Cottonwood Creek Park, Encinitas, CA, USA - R1 Illumina 3300033391 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Riparian soil Soil 33.051658 -117.289363 357298263 1324500 244 16 515 41 0.0 Metagenome 3300017722 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.N DOE Joint Genome Institute (JGI) 3300017722 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 364009295 859877 1 0 4 1 SRX7205050 Unrestricted 45.96 Metagenome 3300011717 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00341 Weill Cornell Medical College 3300011717 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.71 -74.0 35695607 50635 14 0 17 0 SRX822314 0.0 Metagenome 3300022433 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Lake Baghdad, Rottnest Island (WA - Australia) - LBBM1 JM88 AGRF 3300022433 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.994794 115.523776 56577794 108278 60 3 84 4 0.0 Metagenome 3300026345 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-A DOE Joint Genome Institute (JGI) 3300026345 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 68498393 197663 196 15 394 21 SRX4801696 Unrestricted 9.13 Metagenome 3300033509 *Microbiome Permanent Draft Sinkhole microbial mat communities from Lake Huron, Michigan, USA Sinkhole microbial mat communities from Lake Huron, Michigan, USA - SG0291 University of Michigan 3300033509 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy Yes Yes sgrim01@gmail.com Sharon Grim No Environmental Aquatic Sinkhole Freshwater Unclassified microbial mat 45.19843 -83.32721 371177641 449260 147 16 214 20 0.0 Metagenome 3300020481 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 23JUL2008 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020481 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 29397901 63441 56 7 71 16 SRX3310952 Unrestricted 0.0 Metagenome 3300001721 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-54 DOE Joint Genome Institute (JGI) 3300001721 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 49.5673 -138.6705 36713475 92016 20 0 40 2 Unrestricted 0.0 Metagenome 3300001354 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic Microbial community sample from North Sea - COGITO 998_met_05 DOE Joint Genome Institute (JGI) 3300001354 Metagenome Analysis Yes Yes hteeling@mpi-bremen.de, hteeling@mpi-bremen.de; raperrier@lbl.gov; agrieb@mpi-bremen.de Hanno Teeling, Hanno Teeling; Rene A. Perrier; Anissa Grieb Yes 31316134 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Pelagic marine 54.184167 7.9 628868536 1376836 459 118 891 155 SRX802189 Unrestricted 0.0 Metagenome 3300002851 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Dewar Creek, Canada McGill University 3300002851 Metagenome Analysis SPAdes3.1.0 released per JGI data release policy No Yes scaffrey@genomealberta.ca, scaffrey@genomealberta.ca; rstepanauskas@bigelow.org; eaeloefadrosh@lbl.gov Sean M Caffrey, Sean Caffrey; Ramunas Stepanauskas; Emiley Eloe-Fadrosh No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 49.954267 -116.515467 8 110407393 181420 46 0 88 1 0.0 Metagenome 3300013956 *Microbiome Permanent Draft Lung microbial and viral communities from cystic fibrosis patients in San Diego, USA Lung microbial and viral communities from cystic fibrosis patients in San Diego, USA - CF1-2-St-MgMD-nonhuman San Diego State University 3300013956 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Sputum/Phlegm Respiratory system Unclassified Human lung 20613640 35071 29 2 21 3 0.0 Metagenome 3300053747 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHL_02 DOE Joint Genome Institute (JGI) 3300053747 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.40849 -82.168434 397725518 549048 13 21 20 12 Restricted 47.07 Metagenome 3300005593 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV86 DOE Joint Genome Institute (JGI) 3300005593 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 793908287 2106774 1096 15 1707 36 SRX2781859 Unrestricted 0.0 Metagenome 3300047174 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Frasne, France - Sphagnum fallax 12OTC_SF_FR DOE Joint Genome Institute (JGI) 3300047174 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 1304384162 2316052 562 109 858 174 SRX14787456 Unrestricted 9.53 Metagenome 3300061637 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Yellowstone NP, Wyoming, USA - YELL_003-M-20210708-comp-1 DOE Joint Genome Institute (JGI) 3300061637 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 44.954777 -110.533202 1393141085 2453808 570 32 995 45 Unrestricted 18.91 Metagenome 3300031993 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_02 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031993 Metagenome Analysis spades v. 3.12.0 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -19.6574 146.8351 4228931688 8651914 5555 67 8966 118 SRX5787111, SRX5787112 Unrestricted 0.0 Metagenome 3300014731 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 549_4M Beijing Genomics Institute (BGI) 3300014731 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 31068186 37518 13 0 21 0 ERX491200 0.0 Metagenome 2035918005 *Microbiome Draft Soil microbial communities from FACE and OTC sites in USA Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2+ DOE Joint Genome Institute (JGI) 2035918005 Metagenome Analysis Newbler released based on JGI ITS No Yes kuske@lanl.gov Cheryl Kuske No Environmental Terrestrial Sand Soil Desert Soil 36.766667 -115.95 252083467 629698 148 0 355 0 Unrestricted 0.0 Metagenome 3300036981 *Microbiome Permanent Draft Sediment microbial communities from various lakes in Switzerland Sediment microbial communities from Lake Baldegg, Lucerne, Switzerland - LB_0.25 DOE Joint Genome Institute (JGI) 3300036981 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mark.lever@usys.ethz.ch Mark Alexander Lever No Environmental Aquatic Lake Freshwater Sediment sediment 47.1988 8.2602 794501178 1287410 366 16 515 34 SRX8398952 Unrestricted 16.26 Metagenome 3300024315 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 20D DOE Joint Genome Institute (JGI) 3300024315 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 188091080 504682 238 12 394 17 SRX4457542 Unrestricted 40.58 Metagenome 3300049297 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA40 DOE Joint Genome Institute (JGI) 3300049297 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 406137143 1014965 467 5 861 4 Unrestricted 7.35 Metagenome 3300047353 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_170614.NP2 DOE Joint Genome Institute (JGI) 3300047353 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 669198700 1337525 344 58 563 108 Unrestricted 12.75 Metagenome 3300059716 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1562A-3 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059716 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2105 -123.7516 115557732 271605 145 24 275 31 SRX2753753 Unrestricted 0.0 Metagenome 3300022238 *Microbiome Permanent Draft Anaerobic microbial community of wastewater bioreactor in Changsha, Hunan, China Activated sludge microbial communities from anaerobic bioreactor in Hunan University, Changsha, China - 4 Beijing Novogene Bioinformatics Technology Co., Ltd 3300022238 Metagenome Analysis IDBA v.1.1.1 released by JGI data releasing policy No Yes yuezheng@uw.edu Yue Zheng No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 28.2127 113.0106 550434814 1037194 481 1 784 5 0.0 Metagenome 3300026012 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLB_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026012 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.197102 -122.010033 54411693 137910 125 1 244 1 SRX7180843 Unrestricted 0.0 Metagenome 3300031152 *Microbiome Permanent Draft Soil and ectomycorrhiza microbial communities from Populus trichocarpa stands in riparian zones in the Pacific Northwest, United States Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S DOE Joint Genome Institute (JGI) 3300031152 Metagenome Analysis spades v. 3.12.0 Yes Yes kpeay@stanford.edu Kabir Peay No Environmental Terrestrial Riparian zone Soil Trees stand soil 45.9233 -120.701 893777677 2669039 888 71 1698 133 SRX5650590 Unrestricted 8.79 Metagenome 3300032086 *Microbiome Finished Marine viral communities from South Scotia Ridge, Antarctic Ocean Marine viral communities from the Yellow sea, Qingdao, China - WS0928 Beijing Novogene Bioinformatics Technology Co., Ltd 3300032086 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes foodyqw_12@163.com Yang Qingwei No Environmental Aquatic Coastal Marine Unclassified marine 36.062 120.38 431512114 782869 121 2 191 5 0.0 Metagenome 3300033482 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C DOE Joint Genome Institute (JGI) 3300033482 Metagenome Analysis spades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified soil 41.3769 -82.5097 6016798197 15500198 3541 52 6528 111 SRX6871098 Unrestricted 7.41 Metagenome 3300028293 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK03 DOE Joint Genome Institute (JGI) 3300028293 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 230948191 606390 313 19 537 30 SRX5245457 Unrestricted 7.08 Metagenome 3300001173 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 DOE Joint Genome Institute (JGI) 3300001173 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 24986763 81613 108 33 205 51 SRX3312026 Unrestricted 0.0 Metagenome 3300019356 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300019356 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Soil Agricultural land soil 43.3 -89.38 1328182312 3226143 1250 30 2313 52 SRX3899637, SRX3899636 Unrestricted 0.0 Metagenome 3300028474 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_17JUL2017_LD1 DOE Joint Genome Institute (JGI) 3300028474 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 68839289 126494 9 36 7 64 SRX5345828 Unrestricted 20.44 Metagenome 3300038345 *Microbiome Permanent Draft Bovine gut microbial communities from rumen of Nellore cattle in Jaboticabal, Brazil Bovine gut microbial communities from rumen of Nellore cattle in Jaboticabal, Brazil - Bos taurus indicus UNESP-FCAV 3300038345 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Host-associated Mammals Stomach Digestive system Rumen Bovine gut -21.14 -48.17 280365520 493217 273 10 427 12 SRX818104 0.0 Metagenome 7000000164 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764042746 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000164 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 9207113 16324 0 0 0 0 0.0 Metagenome 3300041049 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - T5D1 IDBA-UD 100x Baseclear 3300041049 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 60235226 100897 82 3 142 5 0.0 Metagenome 3300007624 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1548A-02 DOE Joint Genome Institute (JGI) 3300007624 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2319 -123.8812 354384779 672794 317 6 491 18 SRX2753717 Unrestricted 0.0 Metagenome 3300055093 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_43-s37 day 308 DOE Joint Genome Institute (JGI) 3300055093 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1632936788 2454544 387 211 509 198 Unrestricted 36.1 Metagenome 3300032319 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 17-074 Genome Quebec 3300032319 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.111383 -68.88117 629774475 1293289 447 87 744 186 0.0 Metagenome 3300001085 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O1 DOE Joint Genome Institute (JGI) 3300001085 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 5417318 17111 132 64 221 128 SRX2021677, SRX1985468, SRX1985469 Unrestricted 0.0 Metagenome 3300047198 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2014 IH-SL_24cm DOE Joint Genome Institute (JGI) 3300047198 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.213 19.0242 249258149 412797 133 0 249 0 Restricted 36.9 Metagenome 3300013642 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100763 University of Pennsylvania 3300013642 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 6524803 16369 30 5 49 11 SRX756087 0.0 Metagenome 3300010359 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama - MetaG Plot_15 DOE Joint Genome Institute (JGI) 3300010359 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes cpan@ou.edu Chongle Pan No Environmental Terrestrial Tropical forest Soil Bulk soil Tropical forest soil 9.1086 -79.8436 4552383874 10198724 2160 65 3951 151 SRX2525685 Unrestricted 0.0 Metagenome 3300031281 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-40 DOE Joint Genome Institute (JGI) 3300031281 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.759 -70.891 533328113 1112168 533 4 832 5 SRX5358178 Unrestricted 9.6 Metagenome 3300018006 *Microbiome Permanent Draft Coastal wetland sediment microbial communities from the Mid-Atlantic and Southeast Atlantic Coast of USA, responding to salinity intrusion. Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4 DOE Joint Genome Institute (JGI) 3300018006 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Freshwater sediment 35.9061 -76.1569 857870289 1850441 482 1 841 5 SRX4367126 Unrestricted 4.99 Metagenome 3300027007 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 M2 (SPAdes) DOE Joint Genome Institute (JGI) 3300027007 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 153511731 224612 79 0 102 0 SRX3311653 Unrestricted 0.0 Metagenome 3300050719 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water viral communities from Sandhills, Nebraska, United States - NSL_Border_2020_V DOE Joint Genome Institute (JGI) 3300050719 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.79185 -102.53404 291242473 751842 35 6 68 12 Unrestricted 117.89 Metagenome 3300033160 *Microbiome Permanent Draft Understanding the reciprocal impacts of modified plant cell wall and associated microbiome Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R3 DOE Joint Genome Institute (JGI) 3300033160 Metagenome Analysis spades v. 3.13.0 Yes Yes kalluriudayc@ornl.gov Udaya C. Kalluri No Host-associated Plants Stem Phyllosphere Wood/Secondary xylem xylem 32.1348 -81.9657 521658623 531284 56 53 80 79 SRX7583985 Unrestricted 120.64 Metagenome 3300020392 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX555916-ERR599163) CEA Genoscope 3300020392 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -12.9488 -96.0293 838691294 1961896 340 16 641 23 0.0 Metagenome 3300000350 *Microbiome Draft Alkaline sediment microbial communities from Soda lakes and Soda Solonchak soils Alkaline brine water microbial communities from Lake Bitter, Kulunda Steppe, Russia - 5KL_010_BRINE DOE Joint Genome Institute (JGI) 3300000350 Metagenome Analysis released based on JGI ITS Yes Yes g.muijzer@uva.nl Gerard Muyzer No Environmental Aquatic Lake Non-marine Saline and Alkaline Brine Alkaline brine water 51.4 79.54 318457321 700745 91 5 167 12 Unrestricted 0.0 Metagenome 3300042300 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2014-rr0448 DOE Joint Genome Institute (JGI) 3300042300 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 863755338 1399318 345 44 491 61 Unrestricted 15.45 Metagenome 3300070491 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_004-M-20200720-COMP-DNA1 Battelle Memorial Institute 3300070491 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 38.896938 -78.146458 6.46-6.9 20572427 67030 102 6 211 10 0.0 Metagenome 3300001766 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Dec_QV11A DOE Joint Genome Institute (JGI) 3300001766 Metagenome Analysis Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 17748808 24185 14 0 14 0 SRX3322657 Unrestricted 0.0 Metagenome 3300007920 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 706846339 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007920 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 11208321 17912 12 0 20 1 SRX024127 0.0 Metagenome 3300030693 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_2 DOE Joint Genome Institute (JGI) 3300030693 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 962657942 2097705 301 24 481 49 SRX5357888 Unrestricted 13.61 Metagenome 3300070988 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Northern Great Plains Research Laboratory, North Dakota, USA - NOGP_003-M-20200708-COMP-DNA1 3300070988 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 24188871 68745 56 8 100 13 0.0 Metagenome 3300043058 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8SP15 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043058 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 47582614 104450 52 2 91 3 SRX8379682 Unrestricted 56.52 Metagenome 3300027771 *Microbiome Permanent Draft Marine microbial communities from the West Antarctic Peninsula, for metatranscriptomic analysis Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027771 Metagenome Analysis spades v. 3.11.1 Yes Yes mattcott@udel.edu Matthew T. Cottrell No Environmental Aquatic Coastal Marine Unclassified Marine -64.8156 -64.0406 761558683 1717913 223 209 345 328 SRX2848064 Unrestricted 0.0 Metagenome 3300039149 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Realigned salt marsh sediment microbial communities from Mersea Island, United Kingdom - Sp MIRM 1A University of York 3300039149 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Realigned salt marsh sediment 51.79675 0.921833 40007297 96542 47 0 90 0 0.0 Metagenome 3300013400 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100187 University of Pennsylvania 3300013400 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 1617760 4077 5 1 10 6 SRX756346 0.0 Metagenome 3300009662 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-060 DOE Joint Genome Institute (JGI) 3300009662 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Permafrost soil 68.6137 -149.3144 527477441 1139599 622 5 1074 8 SRX2755582 Unrestricted 0.0 Metagenome 3300029427 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 074_4_29_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029427 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 194084816 274583 207 0 286 0 0.0 Metagenome 3300017929 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100 DOE Joint Genome Institute (JGI) 3300017929 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 756608352 1337183 443 4 735 3 SRX3959980 Unrestricted 20.37 Metagenome 2051774004 *Microbiome Permanent Draft Bovine rumen microbial communities from New Zealand Bovine rumen microbial communities from New Zealand - Cow722Adherent AgResearch Limited 2051774004 Metagenome Analysis released per JGI data release policy No Yes christina.moon@agresearch.co.nz Christina Moon No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -40.35 175.61 83786056 215167 0 0 0 0 0.0 Metagenome 3300003409 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA DOE Joint Genome Institute (JGI) 3300003409 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 231414259 430786 219 35 415 36 SRX2570243 Unrestricted 0.0 Metagenome 3300053082 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 soil DOE Joint Genome Institute (JGI) 3300053082 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121406 -123.270107 4.95 484284923 904358 42 2 44 8 Unrestricted 0.0 Metagenome 3300049052 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - A21_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049052 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 743066059 1579070 617 6 1094 12 Unrestricted 0.0 Metagenome 3300015186 *Microbiome Permanent Draft Human fecal microbial communities from infant diaper, Dhaka, Bangladesh Human fecal microbial communities from infant diaper, Dhaka, Bangladesh - DMDT001U Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300015186 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes dhtaft@ucdavis.edu Diana Taft No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant feces 23.8103 90.4125 43714428 65290 56 3 109 3 0.0 Metagenome 3300022325 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Garden Lake, Rottnest Island (WA - Australia) - GL1GP2 JM65 AGRF 3300022325 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.995604 115.536873 26129941 50373 25 1 51 4 0.0 Metagenome 3300050318 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_84 DOE Joint Genome Institute (JGI) 3300050318 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.875 160.739 157648999 252124 7 10 11 11 SRX18235922 Restricted 63.98 Metagenome 3300003668 *Microbiome Permanent Draft Coalbed water microbial communities from the Lithgow State Coal Mine, New South Wales, Australia Coalbed water microbial communities from the Lithgow State Coal Mine, New South Wales, Australia (LSCM4 Late Sample 5) 3300003668 Metagenome Analysis LSCM4L released by JGI data releasing policy Yes Yes john_webster89@hotmail.com John Webster No Environmental Aquatic Groundwater Freshwater Coalbed water Coalbed water -33.460524 150.168149 161885564 268596 154 1 265 3 0.0 Metagenome 3300025470 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025470 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 224400124 454625 126 36 184 58 SRX2566714 Unrestricted 0.0 Metagenome 3300040203 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 034B_R1 University of Maryland 3300040203 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.17378611 24.93292778 9969807 19590 26 0 40 0 0.0 Metagenome 3300002253 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP21-MA 3300002253 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300032272 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Coastal sediment microbial communities from Maine, United States - Lowes Cove worm burrow DOE Joint Genome Institute (JGI) 3300032272 Metagenome Analysis spades v. 3.13.0 Yes Yes jbeam@bigelow.org; demerson@bigelow.org Jake Beam; David Emerson No Environmental Aquatic Coastal Marine Sediment worm burrow 43.9353 -69.5766 3216888973 7355037 2224 127 3704 251 SRX5822357 Unrestricted 9.04 Metagenome 3300043586 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 093-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043586 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9284 -106.9734 595583528 1415938 414 28 779 57 Unrestricted 6.53 Metagenome 3300003615 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_165m_DNA DOE Joint Genome Institute (JGI) 3300003615 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 125615048 236750 127 1 208 1 Unrestricted 0.0 Metagenome 3300050559 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_RHK2_5_to_RHK2 DOE Joint Genome Institute (JGI) 3300050559 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.153 -124.211 241652298 375478 104 57 171 100 Unrestricted 21.42 Metagenome 3300035493 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Tar microbial communities from Pitch Lake, Trinidad and Tobago - PitchLake_TarD DOE Joint Genome Institute (JGI) 3300035493 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Tar Asphalt lakes Unclassified tar 10.23 -61.62 259168201 455932 294 1 441 0 SRX8343855 Unrestricted 31.08 Metagenome 3300000132 *Microbiome Draft Marine microbial communities from chronically polluted sediments in four geographic locations Marine microbial communities from chronically polluted sediments in Antarctica - King George Island site S2 sample ANT 05_23.45m DOE Joint Genome Institute (JGI) 3300000132 Metagenome Analysis released based on JGI ITS Yes Yes hdionisi@cenpat.edu.ar Hebe Dionisi No Environmental Aquatic Intertidal zone Marine Sediment Marine -62.231932 -58.655087 194499958 470314 309 30 602 44 Unrestricted 0.0 Metagenome 3300039881 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 095_R1_022417 University of Maryland 3300039881 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.70833333 27.11019444 23680803 50028 72 0 122 1 0.0 Metagenome 3300061110 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIIF7SW no PMA treatment Jet Propulsion Laboratory, California Institute of Technology 3300061110 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 10015941 11182 12 2 11 1 SRX3244875, SRX3808509, SRX3244864, SRX3808529 0.0 Metagenome 3300017784 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N DOE Joint Genome Institute (JGI) 3300017784 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 571531978 1330639 0 0 1 0 Unrestricted 0.0 Metagenome 3300060888 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Guanica State Forest and Biosphere Reserve, Puerto Rico - GUAN_003-M-20210922-comp-1 DOE Joint Genome Institute (JGI) 3300060888 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tropical forest Soil Unclassified Terrestrial soil 17.973138 -66.861701 1381531317 2424707 449 4 850 11 Unrestricted 18.9 Metagenome 3300007515 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate b Georgia Genomics Facility 3300007515 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 743511656 967374 408 21 472 19 0.0 Metagenome 3300071029 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_046-M-20200602-COMP-DNA1 3300071029 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 10046264 32614 51 10 99 14 0.0 Metagenome 3300070511 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_025-M-20180227-COMP-DNA1 Battelle Memorial Institute 3300070511 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.127266 -119.759842 6.09-6.55 2740709 9156 67 4 124 2 0.0 Metagenome 3300028050 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_17JUL2017_LD1 DOE Joint Genome Institute (JGI) 3300028050 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 136653425 245683 13 67 13 115 SRX5345825 Unrestricted 16.19 Metagenome 3300056863 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E2P_0_1 DOE Joint Genome Institute (JGI) 3300056863 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9927826 -81.4891309 932754866 1517210 463 11 752 15 Unrestricted 14.26 Metagenome 3300070837 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_003-O-20190807-COMP-DNA1 3300070837 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 23696146 66965 50 0 103 2 0.0 Metagenome 3300035199 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #2 DOE Joint Genome Institute (JGI) 3300035199 Metagenome Analysis metaspades v. 3.13.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.7507 -122.0138 1116818180 1799370 465 7 693 11 SRX8669312 Unrestricted 36.97 Metagenome 3300012847 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched pill bug-associated microbial communities from UW Madison campus, WI, USA - HID1972M_E1 MG DOE Joint Genome Institute (JGI) 3300012847 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 104416349 157008 108 2 158 1 SRX3564588 Unrestricted 0.0 Metagenome 3300012161 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT300_2 DOE Joint Genome Institute (JGI) 3300012161 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9225 -106.9521 185020101 425755 248 18 487 36 SRX3368782 Unrestricted 0.0 Metagenome 3300003311 *Microbiome Permanent Draft Cnidaria microbial communities from the Caribbean, with Black Band disease Looe Key pool 3300003311 Metagenome Analysis IDBA-UD released per PI's request No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified Cnidaria 24.5484806 -81.4059137 124960495 240584 158 32 228 43 0.0 Metagenome 3300049238 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB15 DOE Joint Genome Institute (JGI) 3300049238 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 33515733 89113 109 4 222 7 Unrestricted 16.03 Metagenome 3300004448 *Microbiome Permanent Draft Marine viral communities from Newfoundland, Canada Marine viral communities from Newfoundland, Canada BC-1 Yale University 3300004448 Metagenome Analysis CLC bio released per JGI data release policy No Yes olga.zhaxybayeva@dartmouth.edu Olga Zhaxybayeva No Environmental Aquatic Coastal Marine Unclassified Marine 47.593411 -52.885466 166785101 365848 12 0 13 1 0.0 Metagenome 3300041431 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P21_D2 (version 2) DOE Joint Genome Institute (JGI) 3300041431 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 1385421815 2105027 313 55 497 83 SRX10167077 Unrestricted 0.0 Metagenome 3300048129 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_150916.NP2 DOE Joint Genome Institute (JGI) 3300048129 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 906253133 2228405 683 121 1084 191 Unrestricted 14.05 Metagenome 3300003103 *Microbiome Permanent Draft Swine fecal viral communities from China Swine fecal viral communities from China - diarrheic piglet Beijing Genomics Institute (BGI) 3300003103 Metagenome Analysis SOAPdenovo v. 1.06 Made public because these are downloaded from Genbank No Yes yhua900@163.com Yue H Yes 24718833 Host-associated Mammals Large intestine Digestive system Fecal Gut 5674860 12001 7 0 12 0 0.0 Metagenome 3300055461 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.4W.13 SIP fraction DOE Joint Genome Institute (JGI) 3300055461 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 267630267 430498 161 43 311 54 Unrestricted 19.84 Metagenome 3300034102 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112 DOE Joint Genome Institute (JGI) 3300034102 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1475092971 2964373 636 59 939 108 SRX7622086 Unrestricted 14.51 Metagenome 3300013327 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01520 Weill Cornell Medical College 3300013327 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.99 14934956 19461 9 0 10 0 SRX823396 0.0 Metagenome 3300020241 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291768-ERR318619) CEA Genoscope 3300020241 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 33.93 32.7322 16336339 43997 67 3 112 3 0.0 Metagenome 3300035513 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver stomach microbial communities from Maple Ridge, British Columbia, Canada - Beaver5Stomach1 DOE Joint Genome Institute (JGI) 3300035513 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Stomach Digestive system Unclassified stomach 49.18 -122.54 486341632 1113106 51 47 91 51 SRX8346147 Unrestricted 15.83 Metagenome 3300061674 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0562 Microbiome Insights 3300061674 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 196385932 271221 100 19 199 33 0.0 Metagenome 3300039443 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08 v2 DOE Joint Genome Institute (JGI) 3300039443 Metagenome Analysis MEGAHIT v. 1.2.7 Released on PI's request No Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified exposed rock -19.28 -43.5919 1484261011 2459551 897 97 1581 161 SRX4020437 0.0 Metagenome 3300056906 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M1P_80_82 DOE Joint Genome Institute (JGI) 3300056906 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0045281 -81.5645485 1034931028 1576617 470 1 733 0 Unrestricted 20.28 Metagenome 3300001913 *Microbiome Permanent Draft Ecteinascidia turbinata symbiotic microbial communities from the Caribbean mangrove Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 3 DOE Joint Genome Institute (JGI) 3300001913 Metagenome Analysis Yes Yes schofiem@umich.edu, schofiem@umich.edu; davidhs@umich.edu Michael Schofield, Michael Schofield; David Sherman No Host-associated Tunicates Unclassified Ascidians Unclassified Ecteinascidia turbinata 24.5512 -81.8083 837783164 1656429 19 16 36 56 SRX2554408 Unrestricted 0.0 Metagenome 3300070751 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Marvin Klemme Range Research Station, Oklahoma, USA - OAES_009-M-20180530-COMP-DNA1 3300070751 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 44305701 126977 76 2 164 4 0.0 Metagenome 3300007755 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate b Georgia Genomics Facility 3300007755 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 291496842 376603 118 0 143 0 0.0 Metagenome 3300036518 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C5-3A DOE Joint Genome Institute (JGI) 3300036518 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 86641614 280389 211 4 372 8 SRX8790245 Unrestricted 4.3 Metagenome 3300070324 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_041-M-20170719-COMP-DNA1 3300070324 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 122024567 331671 162 16 298 30 0.0 Metagenome 3300045247 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_1_F DOE Joint Genome Institute (JGI) 3300045247 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 149506985 179743 93 2 109 2 Unrestricted 102.42 Metagenome 3300012933 *Microbiome Permanent Draft Freshwater microbial communities from rivers and streams along an organic matter gradient associated with agriculture in Ontario, Canada Freshwater microbial communities from Tributary to Mariposa, Ontario, Canada - S7 Molecular Research LP (MR DNA) 3300012933 Metagenome Analysis metaSPAdes released by JGI data releasing policy No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lotic Freshwater Unclassified Freshwater 44.33257 -78.9405 8.1 229437031 844249 80 7 207 13 0.0 Metagenome 3300014004 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01231 Weill Cornell Medical College 3300014004 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.67 -73.98 17569115 26955 15 0 28 0 SRX823186 0.0 Metagenome 3300041838 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - TR_27_wk_5 DOE Joint Genome Institute (JGI) 3300041838 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9186 -107.036 126301458 388804 254 15 532 22 SRX14809853 Unrestricted 8.11 Metagenome 3300004167 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 55_HOW8 DOE Joint Genome Institute (JGI) 3300004167 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 113935488 251024 83 7 157 26 SRX2720606 Unrestricted 0.0 Metagenome 3300036359 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C4-9C DOE Joint Genome Institute (JGI) 3300036359 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 118128704 377886 269 8 417 9 SRX8787056 Unrestricted 4.48 Metagenome 3300036565 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C2-3A DOE Joint Genome Institute (JGI) 3300036565 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 82346813 259049 188 4 371 8 SRX8816785 Unrestricted 4.49 Metagenome 3300070943 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_001-O-20170731-COMP-DNA1 3300070943 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 718100 2446 11 4 21 5 0.0 Metagenome 3300030377 *Microbiome Permanent Draft Nursing home wastewater effluent microbial communities near Freiburg, Germany Upstream nursing home wastewater effluent microbial communities near Freiburg, Germany - C1755 University of Freiburg 3300030377 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Wastewater Hospital wastewater Industrial wastewater Unclassified Upstream nursing home wastewater 48.0 8.0 11834863 19443 27 0 44 0 SRX516607 0.0 Metagenome 3300018481 *Microbiome Permanent Draft Populus soil microbial communities from riparian zone of different river systems in the western United States Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T DOE Joint Genome Institute (JGI) 3300018481 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jen.schweitzer@utk.edu Jennifer Schweitzer No Environmental Terrestrial Riparian zone Soil Unclassified soil 41.109 -111.7531 5405596648 11890641 3348 108 5716 195 SRX3901439 Unrestricted 6.2 Metagenome 3300024476 *Microbiome Permanent Draft PaintPots Mound Soils and Cell Enrichments Soil bacterial communities from Paint Pots, Kootenay National Park, BC, Canada - NM3B University of Calgary 3300024476 Metagenome Analysis SPAdes v. 3.9.1 released by JGI data releasing policy Yes Yes dunfield.bio@gmail.com Dunfield Laboratory No Environmental Terrestrial Sand Soil Forest soil soil 50.9769 -115.9592 590184228 1186413 266 6 316 10 0.0 Metagenome 3300013834 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS841 reassembly Marine Biological Laboratory 3300013834 Metagenome Analysis reassembly with IDBA-UD released by JGI data releasing policy No Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow hydrothermal vent diffuse flow fluids 18.375023 -81.797603 5.9 6192 10 1 1 1 2 0.0 Metagenome 3300002774 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA DOE Joint Genome Institute (JGI) 3300002774 Metagenome Analysis Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.9082 -79.0499 128733610 237227 106 0 209 0 SRX1991085 Unrestricted 0.0 Metagenome 3300005218 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2 DOE Joint Genome Institute (JGI) 3300005218 Metagenome Analysis Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.000637 -121.624207 1013134411 3567874 885 14 2330 24 SRX7144828 Unrestricted 0.0 Metagenome 3300044538 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - LOSB5-9-5-19 DOE Joint Genome Institute (JGI) 3300044538 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.1455 -120.7069 259322068 727196 385 12 676 28 Restricted 7.81 Metagenome 3300012099 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Florida, USA - TSFL041 MetaG DOE Joint Genome Institute (JGI) 3300012099 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 28.7103 -81.4846 55272027 92262 54 99 71 189 SRX3539478 Unrestricted 0.0 Metagenome 3300032401 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0 DOE Joint Genome Institute (JGI) 3300032401 Metagenome Analysis spades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5111 -110.3555 4943227755 10746663 3004 14 5277 35 SRX6379664 Unrestricted 9.34 Metagenome 3300001541 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 DOE Joint Genome Institute (JGI) 3300001541 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,, Yes Yes brune@mpi-marburg.mpg.de Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 26.0625 -80.2332 165174720 550774 12 7 24 9 SRX3315525, SRX3315524 0.0 Metagenome 3300005772 *Microbiome Permanent Draft Human lung microbial communities from healthy (non-smokers and smokers) and HIV infected subjects Human lung microbial communities from Normal Smokers Background 100804-1 New York University Langone Medical Center 3300005772 Metagenome Analysis Shotgun released per JGI data release policy No Yes leopoldo.segal@nyumc.org Leopoldo N Segal No Host-associated Mammals: Human Lung Respiratory system Unclassified Lung Microbiome 40.7127 -74.0059 28862664 85681 0 4 0 2 0.0 Metagenome 3300037826 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site2_nosalt_MIX_2 DOE Joint Genome Institute (JGI) 3300037826 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Salt marsh microbial mat 20.7452 58.6625 1478159886 2121364 552 1 763 1 SRX9169784 Unrestricted 22.73 Metagenome 3300014180 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Indonesia to Iowa, USA - IO2 Iowa State University 3300014180 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 5975567 11818 0 2 0 0 SRX1150289 0.0 Metagenome 3300001479 *Microbiome Permanent Draft Sheep rumen microbial communities from New Zealand from high and low methane emitting sheep Sheep rumen microbial communities from New Zealand - Rank34_high DOE Joint Genome Institute (JGI) 3300001479 Metagenome Analysis Velvet Released because these are assemblies from SRA data No Yes janine.kamke@agresearch.co.nz, janine.kamke@uni-wuerzburg.de Janine Kamke No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen -40.352 175.608 263850307 555478 562 74 1000 87 0.0 Metagenome 3300006034 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_05_40cm DOE Joint Genome Institute (JGI) 3300006034 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2839715030 8562448 2773 81 4809 118 SRX2726265 Unrestricted 0.0 Metagenome 3300022052 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 43 SPOT_SRF_2013-05-22 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022052 Metagenome Analysis spades v. 3.11.1-check Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 1588165 5957 4 0 1 1 SRX5471853, SRX5471852, SRX5471851 Unrestricted 0.0 Metagenome 3300049325 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MB39 DOE Joint Genome Institute (JGI) 3300049325 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 60734348 154157 165 6 383 12 Unrestricted 23.31 Metagenome 3300002090 *Microbiome Permanent Draft Soil microbial communities from Kansas (Konza Prairie Natural Area and Manhattan, Kansas, USA) Soil microbial communities from Manhattan, Kansas, USA - Sample 200um MDA DOE Joint Genome Institute (JGI) 3300002090 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 revert back to private per Christa Yes Yes sgtringe@lbl.gov, sgtringe@lbl.gov; ELBrodie@lbl.gov Susannah Tringe, Susannah Tringe; Eoin Brodie No Environmental Terrestrial Unclassified Soil Unclassified Soil 39.214 -96.5852 79013848 142297 29 0 66 0 Unrestricted 0.0 Metagenome 3300025054 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment bacterial and archeal communities from California, USA to study Microbial Dark Matter (Phase II) - Elbow Spring sediment metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025054 Metagenome Analysis spades v. 3.11.1 Yes Yes jkjarett@lbl.gov; rstepanauskas@bigelow.org Jessica Jarett; Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 39.0348 -122.4271 8.17 25233824 52717 46 1 83 1 SRX2526469 Unrestricted 0.0 Metagenome 3300038641 *Microbiome Permanent Draft Freshwater sediment microbial communities from Chandeleur Islands, USA Subtidal sediment core microbial communities from Chandeleur Islands, USA - JSubC3 University of Alabama 3300038641 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Wetlands Freshwater Sediment Subtidal sediment core 29.862806 -88.841194 3395087 11319 17 0 29 1 0.0 Metagenome 3300035061 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - T1-14 Autonomous University of Barcelona 3300035061 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 13967764 73699 159 0 268 0 0.0 Metagenome 3300004189 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 63_LOW9 DOE Joint Genome Institute (JGI) 3300004189 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 52576339 122767 33 0 64 0 SRX2720761 Unrestricted 0.0 Metagenome 3300011470 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00330 Weill Cornell Medical College 3300011470 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.98 20866209 25179 15 0 15 0 SRX822303 0.0 Metagenome 7000000256 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764588959 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000256 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 3791681 7686 0 0 0 0 0.0 Metagenome 3300047299 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Ping River, Chiang Ma, Thailand - ME060036 DOE Joint Genome Institute (JGI) 3300047299 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 19.4571 98.9901 269165630 517560 172 3 294 7 Unrestricted 24.22 Metagenome 3300028518 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 8 Selected contigs with viral hallmark genes 2 Autonomous University of Barcelona 3300028518 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 2141600 2989 0 0 0 0 0.0 Metagenome 3300048631 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from North Pacific Ocean - CTD007B DOE Joint Genome Institute (JGI) 3300048631 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 9.838067 -104.2912 667787720 1100597 320 47 490 94 Unrestricted 25.15 Metagenome 3300000613 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 14NOV2007 hypolimnion DOE Joint Genome Institute (JGI) 3300000613 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300020006 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - U1m2 DOE Joint Genome Institute (JGI) 3300020006 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9228 -106.9541 355552759 747123 222 11 482 23 SRX3958584, SRX3958583 Unrestricted 0.0 Metagenome 3300043490 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-297 Genome Quebec 3300043490 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 52.398519 -98.912933 849992808 1992138 344 105 616 207 0.0 Metagenome 3300060392 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210613_17_13 DOE Joint Genome Institute (JGI) 3300060392 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 511902125 739791 234 162 326 210 Unrestricted 30.83 Metagenome 3300025557 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_CordB_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025557 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.015896 -122.501663 184313335 379272 225 3 315 4 SRX7142161 Unrestricted 0.0 Metagenome 3300034135 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 25HNC DOE Joint Genome Institute (JGI) 3300034135 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological hypolithic biocrust 34.3778 -117.6098 308617770 705854 468 27 906 29 SRX7619825 Unrestricted 9.53 Metagenome 3300011807 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01096 Weill Cornell Medical College 3300011807 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.63 -73.94 25314581 40242 19 0 28 0 SRX823051 0.0 Metagenome 3300045931 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P24SSC2_191109_c DOE Joint Genome Institute (JGI) 3300045931 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 771138331 1222773 256 1 387 1 SRX20650055 Unrestricted 11.81 Metagenome 3300045776 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - G1-R3-A DOE Joint Genome Institute (JGI) 3300045776 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.048 476038711 972054 241 45 371 60 Unrestricted 9.56 Metagenome 3300006811 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 508703490 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006811 Metagenome Analysis SPADES v3.7.0 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 3778494 6073 11 0 15 2 0.0 Metagenome 3300028359 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #49 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028359 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 52135148 89991 23 1 35 1 SRX3296160 Unrestricted 0.0 Metagenome 3300043205 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_7 (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043205 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 179497420 299297 66 2 121 3 SRX9140452 Unrestricted 89.14 Metagenome 3300013011 *Microbiome Permanent Draft Gypsum rock endolithic and hypoendolithic microbial communities Gypsum crust endolithic microbial communities from the Atacama Desert, Chile - KM37 Johns Hopkins Bayview Research CORES 3300013011 Metagenome Analysis metaSPAdes released by JGI data releasing policy Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock -20.43644 -69.58397 299525533 781802 152 4 260 17 0.0 Metagenome 3300037468 *Microbiome Permanent Draft Sediment microbial communities from various lakes in Switzerland Sediment microbial communities from Lake Zug, Canton of Zug, Switzerland - LZug_5 DOE Joint Genome Institute (JGI) 3300037468 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mark.lever@usys.ethz.ch Mark Alexander Lever No Environmental Aquatic Lake Freshwater Sediment sediment 47.1639 8.4969 1157209588 1989434 395 6 648 6 SRX9147845 Unrestricted 19.02 Metagenome 3300012672 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT266_2 DOE Joint Genome Institute (JGI) 3300012672 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8896 -106.9082 65503640 165826 189 19 462 42 SRX3368457 Unrestricted 0.0 Metagenome 3300028565 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_3 DOE Joint Genome Institute (JGI) 3300028565 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 634243091 1407745 266 23 379 66 SRX5281064 Unrestricted 0.0 Metagenome 3300008733 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 763759525 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008733 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 98004785 129576 73 0 140 1 0.0 Metagenome 3300022666 *Microbiome Permanent Draft Biofilm microbial communities from lab-scale anaerobic bioreactors in Urbana, Illinois, USA Biofilm microbial community in ceramics-packed bioreactor in Urbana, Illinois, USA - CM1 University of Illinois, Urbana-Champaign 3300022666 Metagenome Analysis SPAdes v. 3.11.1 released by JGI data releasing policy Yes Yes r.mei@aist.go.jp Ran Mei No Engineered Bioreactor Biofilm Anaerobic Unclassified biofilm 40.12 -88.2 534098770 613020 210 5 232 2 0.0 Metagenome 3300037609 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - HN_101317 DOE Joint Genome Institute (JGI) 3300037609 Metagenome Analysis metaspades v. 3.13.0 Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.9002 -89.3556 312111444 826338 376 35 705 46 SRX9381645 Unrestricted 6.33 Metagenome 3300046115 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_269 DOE Joint Genome Institute (JGI) 3300046115 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 866215791 2038623 571 24 1135 45 Unrestricted 0.0 Metagenome 3300010293 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 52m metaG DOE Joint Genome Institute (JGI) 3300010293 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; sean.crowe@ubc.ca Ramunas Stepanauskas; Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Anoxic lake water -1.78 29.2 536143232 1050683 487 39 854 56 SRX2525300 Unrestricted 0.0 Metagenome 3300029009 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 377_4M Beijing Genomics Institute (BGI) 3300029009 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 49012525 64520 27 0 45 0 ERX491112 0.0 Metagenome 3300012126 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC081 MetaG DOE Joint Genome Institute (JGI) 3300012126 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 34.917 -79.3534 130553915 218405 52 29 89 72 SRX3539723 Unrestricted 0.0 Metagenome 3300033695 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from gas well in Marcellus Shale, West Virginia, United States - MIP3H_12222015 Ohio State University 3300033695 Metagenome Analysis IDBA-UD v. 1.1.1 No Yes rebdaly@colostate.edu Rebecca Daly No Environmental Terrestrial Fracking water Deep subsurface Unclassified Fracking Water 39.6017 -79.9761 14930391 14539 5 0 2 0 0.0 Metagenome 3300046168 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_PBmetag_200108.NPB DOE Joint Genome Institute (JGI) 3300046168 Metagenome Analysis metaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 217642117 236392 117 9 111 8 Unrestricted 0.0 Metagenome 3300031848 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #3 DOE Joint Genome Institute (JGI) 3300031848 Metagenome Analysis spades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5735 77.9231 783221086 1701220 344 167 450 267 SRX6409955 Unrestricted 13.71 Metagenome 3300025385 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Jul07 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025385 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 127511723 278112 90 59 157 119 SRX2565287 Unrestricted 0.0 Metagenome 3300014507 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 526_B Beijing Genomics Institute (BGI) 3300014507 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 25359010 29407 15 0 25 0 ERX491173 0.0 Metagenome 3300002798 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G08K3-12 DOE Joint Genome Institute (JGI) 3300002798 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 167767 585 9 0 22 0 SRX1991304 Unrestricted 0.0 Metagenome 3300066012 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Mid-Atlantic, VA, USA - BLAN_007-M-20170713-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066012 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Farm Terrestrial soil 39.06026 -78.07164 10471026 34380 63 4 122 6 0.0 Metagenome 3300035237 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P4_June_2018_500m DOE Joint Genome Institute (JGI) 3300035237 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 48.65 -126.6666 472477368 1212887 418 47 687 67 SRX8199654 Unrestricted 13.88 Metagenome 3300026641 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_11_19 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026641 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 7397754 10471 4 0 14 0 SRX2924863 Unrestricted 0.0 Metagenome 3300011681 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway plastic -P01409 Weill Cornell Medical College 3300011681 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Plastic surface city subway plastic 40.85 -73.9 25583555 39632 21 0 20 0 SRX823349 0.0 Metagenome 3300045163 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_1_A DOE Joint Genome Institute (JGI) 3300045163 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 116765421 140229 69 1 100 0 Unrestricted 134.84 Metagenome 3300023220 *Microbiome Permanent Draft Microbial communities of deep seafloor calcareous sediment with volcaniclastic crumbs from southwestern Indian Ocean Marine sediment microbial communities from southwestern Indian Ocean - DY125-40IV-SWIR-S016-TVG09 Third Institute of Oceanography, State Oceanic Administration 3300023220 Metagenome Analysis idba v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Coastal Marine Sediment sediment -35.9 52.93333 1993010502 3327739 235 45 460 37 0.0 Metagenome 3300029155 *Microbiome Permanent Draft Infant fecal microbial communities from Pittsburgh, USA Infant fecal microbial communities from Pittsburgh, USA - NECEvent2014_2_1 Banfield Lab, University of California, Berkeley 3300029155 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant fecal 40.4308 -79.9598 20649010 23826 70 0 55 0 0.0 Metagenome 3300003236 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01K1-12 DOE Joint Genome Institute (JGI) 3300003236 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 473197 1495 18 1 52 4 SRX2576116 Unrestricted 0.0 Metagenome 3300006418 *Microbiome Permanent Draft Microbial communities from manure storage tank from Sherbrooke, QC, Canada Microbial communities from pig manure storage tank from Sherbrooke, QC, Canada, enriched culture A1 Agriculture and Agri-Food Canada 3300006418 Metagenome Analysis Trinity released per JGI data release policy No Yes jennifer.town@agr.gc.ca, Jennifer.town@agr.gc.ca Jennifer Town No Engineered Solid waste Unclassified Animal waste Unclassified Pig Manure 45.4 -71.9 23426148 40467 43 0 95 0 0.0 Metagenome 3300025717 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring microbial communities from Elkhorn Slough, Monterey Bay, USA - MD2A (version 2) DOE Joint Genome Institute (JGI) 3300025717 Metagenome Analysis spades v. 3.11.1 Yes Yes jim.fredrickson@pnnl.gov; pettridge2@llnl.gov Jim Fredrickson; Jennifer Pett-Ridge Yes 29167704 Environmental Aquatic Intertidal zone Marine Estuary: Microbial mat Hypersaline mat 36.83 -121.785 512009680 1011696 471 34 756 51 SRX2879537 Unrestricted 0.0 Metagenome 3300037147 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPON1-2-X1 DOE Joint Genome Institute (JGI) 3300037147 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3569 19.0502 854450640 1562328 268 8 439 7 SRX8164191 Unrestricted 10.46 Metagenome 3300021110 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 08JUN2009 epilimnion DOE Joint Genome Institute (JGI) 3300021110 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 4004561 10191 13 3 26 5 Unrestricted 0.0 Metagenome 3300027854 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027854 Metagenome Analysis spades v. 3.11.1 Yes Yes Michael.Pester@dsmz.de Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 1522353059 2788084 439 13 691 12 Unrestricted 0.0 Metagenome 3300049433 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_21CD DOE Joint Genome Institute (JGI) 3300049433 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.3689 -106.1051 1954689116 3062064 431 78 712 106 SRX20649990 Unrestricted 0.0 Metagenome 3300037861 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Unnamed Esperance Lake #10 DOE Joint Genome Institute (JGI) 3300037861 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5483 78.2985 517996517 1001031 282 83 404 96 SRX9173352 Unrestricted 27.25 Metagenome 3300027429 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A5a-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300027429 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 24424955 81886 99 0 154 1 SRX1991127 Unrestricted 0.0 Metagenome 3300004243 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 98_LOW12 DOE Joint Genome Institute (JGI) 3300004243 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 22857072 46628 23 2 43 6 SRX2721173 Unrestricted 0.0 Metagenome 7000000420 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159551223 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000420 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 19073474 39728 0 0 0 0 0.0 Metagenome 3300013563 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100371 University of Pennsylvania 3300013563 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3026510 3928 8 4 10 6 SRX756286 0.0 Metagenome 3300057015 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E2L_50_52 DOE Joint Genome Institute (JGI) 3300057015 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9934494 -81.4907807 1144224065 1905580 540 4 950 6 Unrestricted 12.64 Metagenome 3300019927 *Microbiome Permanent Draft Hypersaline water viral communities from Tuz Lake and Camalt? Saltern, Turkey Hypersaline water viral communities from a salt crystallizer pond in Camalti Saltern, Izmir, Turkey ? 3Ca University of Alicante 3300019927 Metagenome Analysis IDBA_1.1.1 PRE_correction released by JGI data releasing policy No Yes ramosloles@gmail.com Mar?a Dolores Ramos Barbero No Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Unclassified High salinity water of salt crystallization pond 38.49 26.92 44668554 140326 1 1 3 0 0.0 Metagenome 3300014116 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In4P SAF170 SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300014116 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1 -118.1 2981372 4639 2 0 8 5 Unrestricted 0.0 Metagenome 3300017436 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_12SEP2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017436 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 255819569 463511 35 77 70 112 SRX3927015 Unrestricted 9.14 Metagenome 3300006465 *Microbiome Permanent Draft Deep-sea sediment bacterial and archaeal communities Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten IX Center for Biotechnology (CeBiTec), Bielefeld Univeristy 3300006465 Metagenome Analysis Spades 3.6.0 released per JGI data release policy Yes Yes jrapp@mpi-bremen.de Josephine Rapp No Environmental Aquatic Oceanic Marine Sediment sediment 77.950787 -1.627126 843737579 2434782 367 20 656 38 0.0 Metagenome 3300035026 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - C12-0 Autonomous University of Barcelona 3300035026 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 94154622 391366 832 1 1664 0 0.0 Metagenome 3300005979 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius clavatus LIZARD ISLAND.2 DOE Joint Genome Institute (JGI) 3300005979 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 672861929 1512552 8 5 15 33 SRX2712175 Unrestricted 0.0 Metagenome 3300040551 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_027-M-20170624-COMP-DNA1 Battelle Memorial Institute 3300040551 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 2626702 8257 28 5 42 8 0.0 Metagenome 3300002501 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Neocapritermes taracua P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Nt197 P1 DOE Joint Genome Institute (JGI) 3300002501 Metagenome Analysis Yes Yes karen.rossmassler@gmail.com, brune@mpi-marburg.mpg.de Karen Rossmassler, Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 5.0626 -53.0462 1529527804 3548391 864 98 1502 86 SRX2554905 Unrestricted 0.0 Metagenome 3300060670 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_041-O-20210803-comp-1 DOE Joint Genome Institute (JGI) 3300060670 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tundra Soil Unclassified Terrestrial soil 68.666666 -149.369752 2206642902 3589799 525 100 879 128 Unrestricted 14.81 Metagenome 3300002399 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 07JUL2009 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002399 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 51473182 127811 85 19 182 31 SRX1987765 Unrestricted 0.0 Metagenome 3300022875 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 10-14 DOE Joint Genome Institute (JGI) 3300022875 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0474 240333990 462271 108 7 167 10 SRX4415363, SRX8658334 Unrestricted 0.0 Metagenome 3300008679 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763577454 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008679 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 196518779 320806 139 2 187 2 0.0 Metagenome 3300069427 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountain National Park, Central Plains, CO, USA - RMNP_005-O-20170808-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069427 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.27591 -105.54592 105633460 298064 128 10 238 24 0.0 Metagenome 3300047176 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Frasne, France - Sphagnum fallax 3OTC_SF_FR DOE Joint Genome Institute (JGI) 3300047176 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 903834208 1527715 327 107 463 160 SRX14787539 Unrestricted 8.32 Metagenome 3300001648 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 DOE Joint Genome Institute (JGI) 3300001648 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 25568094 75820 32 4 55 5 SRX2014329 Unrestricted 0.0 Metagenome 3300044631 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME24Jul2018-rr0916 DOE Joint Genome Institute (JGI) 3300044631 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1063162765 1605992 444 59 579 92 Unrestricted 16.27 Metagenome 3300003895 *Microbiome Permanent Draft Freshwater sediment microbial communities from Dianchi Lake, China, of magnetotactic bacteria Freshwater sediment microbial communities from Dianchi Lake, China, of magnetotactic bacteria Beijing Genomics Institute (BGI) 3300003895 Metagenome Analysis Velvet v. 1.2.07 released per JGI data release policy No Yes weilin0408@gmail.com Wei Lin No Environmental Aquatic Lentic Freshwater Sediment sediment 24.860277 102.700199 24046318 30060 1 1 2 1 0.0 Metagenome 3300024518 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2 DOE Joint Genome Institute (JGI) 3300024518 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Inlet Marine Unclassified seawater 50.0528611 -123.8211389 1346256523 3287085 596 48 1102 102 SRX4480508 Unrestricted 8.74 Metagenome 3300065588 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 786 in Hanna, Alberta, Canada - S00JY_0428 Microbiome Insights 3300065588 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.31527169 -112.0508909 94262841 142694 58 1 100 2 0.0 Metagenome 3300007809 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human Vaginal introitus microbial communities from NIH, USA - visit 2, subject 764042746 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007809 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Introitus Human 39.0042816 -77.1012173 3402732 5156 5 0 8 0 0.0 Metagenome 3300027445 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G08K3-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300027445 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 8938293 26532 67 0 113 3 SRX1991304 Unrestricted 0.0 Metagenome 3300001356 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 DOE Joint Genome Institute (JGI) 3300001356 Metagenome Analysis Yes Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 951145351 2011756 383 3 589 15 Unrestricted 0.0 Metagenome 3300038548 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_4000m_C2_0cm5cm DOE Joint Genome Institute (JGI) 3300038548 Metagenome Analysis metaspades v. 3.13.0 Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.1948 -122.0383 2973718727 4881479 819 18 1366 21 SRX9141699 Unrestricted 16.76 Metagenome 3300024359 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 34D DOE Joint Genome Institute (JGI) 3300024359 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 228612940 448146 161 40 233 56 SRX4459081 Unrestricted 17.32 Metagenome 3300013954 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01074 Weill Cornell Medical College 3300013954 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.79 -73.94 17274843 23601 6 0 10 0 SRX823029 0.0 Metagenome 3300003746 *Microbiome Permanent Draft Deep subsurface and oceanic microbial communities from Witwatersrand Basin, South Africa, and the Canadian and Fennoscandian shields and at the Lost City Hydrothermal Field Deep subsurface microbial communities from North Pacific Ocean - 450_OLKR46/470m Metagenome DOE Joint Genome Institute (JGI) 3300003746 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Terrestrial Unclassified Deep subsurface Unclassified Deep subsurface 47.88611 -127.75 103212683 226192 131 2 185 8 Unrestricted 0.0 Metagenome 3300036476 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C1-7C DOE Joint Genome Institute (JGI) 3300036476 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 91512797 279109 189 6 343 12 SRX8816772 Unrestricted 4.83 Metagenome 3300015309 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_09MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015309 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 171334422 301327 14 73 28 134 SRX3921694 Unrestricted 9.37 Metagenome 3300010368 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNA DOE Joint Genome Institute (JGI) 3300010368 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes bcampb7@clemson.edu Barbara Campbell Yes 29703736 Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 38.0754 -76.1533 820899418 1908568 316 39 748 58 SRX2526848 Unrestricted 0.0 Metagenome 3300032355 *Microbiome Permanent Draft Understanding the reciprocal impacts of modified plant cell wall and associated microbiome Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R2 DOE Joint Genome Institute (JGI) 3300032355 Metagenome Analysis spades v. 3.13.0 Yes Yes kalluriudayc@ornl.gov Udaya C. Kalluri No Host-associated Plants Stem Phyllosphere Wood/Secondary xylem xylem 32.1348 -81.9657 695184292 870188 181 97 248 140 SRX6871100 Unrestricted 80.17 Metagenome 3300011723 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00226 Weill Cornell Medical College 3300011723 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.8 -73.96 31625196 51258 22 0 31 0 SRX822205 0.0 Metagenome 3300041958 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS908_Marker33_DNA SE_2020 Marine Biological Laboratory 3300041958 Metagenome Analysis IDBA_UD v. 1.1.3 released by JGI data releasing policy No Yes cfortunato@gmail.com; randerson@carleton.edu; elks@mit.edu Caroline Fortunato; Rika Anderson; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 247392160 510686 377 21 692 25 0.0 Metagenome 3300010315 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 1 OAHU.JWI-70 metaG (version 2) DOE Joint Genome Institute (JGI) 3300010315 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms 21.2833 -157.8469 677002474 920416 6 20 17 17 SRX2525533 Unrestricted 0.0 Metagenome 3300027506 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_66_BLW_10 (SPAdes) DOE Joint Genome Institute (JGI) 3300027506 Metagenome Analysis spades v. 3.11.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 303029225 609767 337 51 452 81 SRX2572620 Unrestricted 0.0 Metagenome 3300049040 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - I25_A_BS (version 2) DOE Joint Genome Institute (JGI) 3300049040 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 64248315 161278 212 3 470 9 Unrestricted 0.0 Metagenome 3300012853 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - HID1975M_E1 MG DOE Joint Genome Institute (JGI) 3300012853 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 119867213 179774 131 0 169 0 SRX3564630 Unrestricted 0.0 Metagenome 3300005300 *Microbiome Permanent Draft Hot Spring microbial communities from Great Boiling Spring, Nevada Hot spring microbial communities from Great Boiling Spring, Nevada - cellulolytic enrichment S 77C v2 (version 2) DOE Joint Genome Institute (JGI) 3300005300 Metagenome Analysis SPADES v3.5.0 released based on JGI ITS Yes Yes nnivanova@lbl.gov, brian.hedlund@unlv.edu; eaeloefadrosh@lbl.gov Natasha Ivanova, Brian Hedlund; Emiley Eloe-Fadrosh Yes 23555835 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot Spring 40.71458 -119.369659 6.37 125361107 187608 95 0 121 0 Unrestricted 0.0 Metagenome 3300070876 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_024-M-20180725-COMP-DNA1 Battelle Memorial Institute 3300070876 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 47.151171 -99.262648 7.78-8.04 455133 1308 8 3 18 6 0.0 Metagenome 3300019766 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_2_MG DOE Joint Genome Institute (JGI) 3300019766 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Microbial mats Freshwater microbial mat 38.7906 -75.1644 383325201 769034 828 30 1253 56 SRX3982600 Unrestricted 7.97 Metagenome 3300049664 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_A_2_drought DOE Joint Genome Institute (JGI) 3300049664 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 135674523 299588 305 25 597 40 Unrestricted 13.35 Metagenome 3300043069 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - HLP_080817 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043069 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.896 -89.3636 4235085 13163 30 5 57 6 SRX9381727 Unrestricted 32.66 Metagenome 3300037882 *Microbiome Permanent Draft Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA Freshwater stream surface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA - White Creek v2 Argonne National Laboratory 3300037882 Metagenome Analysis Megahit v. 1.0.6.1 Release as per PI request (GOLD-1409) SM 8.16.2021 No Yes lmmomper@gmail.com; maggie@northwestern.edu Caitlin Casar; Magdalena Osburn No Environmental Aquatic Creek Freshwater Unclassified freshwater 44.350833 -103.765833 363492028 564358 177 14 273 27 0.0 Metagenome 3300011662 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - seawater enrichment SCG55 University of British Columbia 3300011662 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 2400611 5017 2 0 10 0 SRX143164 0.0 Metagenome 3300008304 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160421117 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008304 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 131056970 190487 116 0 186 0 0.0 Metagenome 3300024437 *Microbiome Permanent Draft Vaginal microbial communities from lab mice Vaginal microbial communities from lab mice with HSV-2 infection, Madrid, Spain - C5, day 10 Polytechnic University of Valencia 3300024437 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Vagina Reproductive system Unclassified mice vagina 40.4191094 -3.6725753 133695 229 0 0 0 0 0.0 Metagenome 3300069593 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, Pacific Southwest, CA, USA - SJER_046-M-20170316-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069593 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.10878 -119.73228 139965013 405974 295 45 645 94 0.0 Metagenome 3300031140 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #420 DOE Joint Genome Institute (JGI) 3300031140 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5596 77.8957 309920000 608028 227 87 311 142 SRX5650217 Unrestricted 21.37 Metagenome 3300027117 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027117 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 169604166 387266 132 41 265 75 SRX3312005 Unrestricted 0.0 Metagenome 3300021122 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 19AUG2008 epilimnion DOE Joint Genome Institute (JGI) 3300021122 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 70010800 145763 71 12 106 19 Unrestricted 0.0 Metagenome 7000000412 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 159713063 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000412 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 3591306 3487 0 0 0 0 0.0 Metagenome 3300003985 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius ilvae ELBA.1 DOE Joint Genome Institute (JGI) 3300003985 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 260947201 663220 4 5 9 5 SRX2711654 Unrestricted 0.0 Metagenome 3300026102 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026102 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.000706 -121.624306 113289102 302198 221 0 395 0 SRX7188163 Unrestricted 0.0 Metagenome 3300014670 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01215 Weill Cornell Medical College 3300014670 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.86 -73.89 30225384 50692 20 0 30 0 SRX823170 0.0 Metagenome 3300070618 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_001-M-20200719-COMP-DNA1 3300070618 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 43333286 125646 52 18 113 28 0.0 Metagenome 3300000760 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 01JUL2008 hypolimnion DOE Joint Genome Institute (JGI) 3300000760 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300000342 *Microbiome Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Ferrous microbial mat communities from One Hundred Spring Plain, Yellowstone National Park, USA - T=74-76 DOE Joint Genome Institute (JGI) 3300000342 Metagenome Analysis released based on JGI ITS Yes Yes jim.fredrickson@pnnl.gov, jim.fredrickson@pnnl.gov; NNIvanova@lbl.gov Jim Fredrickson, Jim Fredrickson; Natalia Ivanova Yes 26913020 Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Ferrous mat 44.7330426 -110.7089928 3.6 53771850 97492 40 3 52 0 Unrestricted 0.0 Metagenome 3300003659 *Microbiome Permanent Draft Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 DOE Joint Genome Institute (JGI) 3300003659 Metagenome Analysis revert back to private per Christa Yes Yes filipagodoyvitorino@gmail.com, NNIvanova@lbl.gov; filipagodoyvitorino@gmail.com; fgodoyvitorino@gmail.com Filipa Godoy Vitorino, Natalia Ivanova; Filipa Godoy-Vitorino; Filipa Godoy Vitorino No Host-associated Plants Rhizosphere Roots Unclassified Tabebuia heterophylla rhizosphere 18.402889 -66.050054 310409359 779725 503 84 814 118 SRX2562385 Unrestricted 0.0 Metagenome 3300009054 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG S.737 DOE Joint Genome Institute (JGI) 3300009054 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 258197311 499127 348 90 548 181 SRX2753578 Unrestricted 0.0 Metagenome 3300029265 *Microbiome Permanent Draft ACE Virus Marine viral community from the Austral Polar Province, Southern Ocean - ACE 070ACD University of Michigan 3300029265 Metagenome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes duhaimem@umich.edu Melissa Duhaime No Environmental Aquatic Unclassified Marine Unclassified Marine -67.0928 145.0131 144298767 245036 122 96 126 186 0.0 Metagenome 3300050515 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation DOE Joint Genome Institute (JGI) 3300050515 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Host-associated Plants Rhizosphere Roots Soil Populus rhizosphere 35.8444 -83.9599 2764769931 5619221 1270 32 2290 72 SRX2923912 0.0 Metagenome 3300045253 *Microbiome Permanent Draft Forest soil microbial communities from boreal-temperate forests in Minnesota, USA Forest soil microbial communities from Hubachek Wilderness Research Center, Ely, Minnesota, USA - Ely DRY WD J7 DOE Joint Genome Institute (JGI) 3300045253 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pankaj.trivedi@colostate.edu Pankaj Trivedi No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 47.55 -92.3 789553853 1342940 203 15 418 17 Unrestricted 15.48 Metagenome 3300030336 *Microbiome Permanent Draft Soil microbial communities from agricultural site in Penn Yan, New York, United States Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1 DOE Joint Genome Institute (JGI) 3300030336 Metagenome Analysis spades v. 3.12.0 Yes Yes dbuckley@cornell.edu Dan Buckley No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.673 -77.032 3650264568 9656614 1571 21 2822 54 SRX5338653 Unrestricted 15.56 Metagenome 3300021411 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - H3c2 DOE Joint Genome Institute (JGI) 3300021411 Metagenome Analysis spades v. 3.11.1-check Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9821 -107.0102 241679988 497284 164 15 294 24 SRX3944471, SRX3944470 Unrestricted 0.0 Metagenome 3300007661 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1546A-3 DOE Joint Genome Institute (JGI) 3300007661 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2311 -123.8825 279497413 549642 321 59 543 121 SRX2753618 Unrestricted 0.0 Metagenome 3300070665 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Bartlett Experimental Forest, New Hampshire, USA - BART_002-O-20160727-COMP-DNA1 3300070665 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 3164141 11733 26 6 61 8 0.0 Metagenome 3300070957 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Agroecosystem, Kansas, USA - KONA_002-M-20190617-COMP-DNA1 3300070957 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Agricultural land Soil 3083656 10450 21 4 43 3 0.0 Metagenome 3300055509 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.3C.11 SIP fraction DOE Joint Genome Institute (JGI) 3300055509 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 167263225 292822 236 42 408 68 Unrestricted 15.87 Metagenome 3300029218 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012062-30 Beijing Genomics Institute (BGI) 3300029218 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 143730064 185938 114 0 203 0 0.0 Metagenome 3300043087 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver stomach microbial communities from Maple Ridge, British Columbia, Canada - Beaver4Stomach1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043087 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Stomach Digestive system Unclassified stomach 49.18 -122.54 421534771 694919 5 3 11 10 SRX8345910 Unrestricted 16.37 Metagenome 7000000121 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 158924089 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000121 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 375709 1053 0 0 0 0 SRX024706, SRX024649, SRX024650 0.0 Metagenome 3300029772 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36703 Beijing Genomics Institute (BGI) 3300029772 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 190232870 260353 172 2 227 1 0.0 Metagenome 3300013650 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100716 University of Pennsylvania 3300013650 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8872097 18002 27 7 55 18 SRX756134 0.0 Metagenome 3300040134 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_060-O-20170718-COMP-DNA1 Battelle Memorial Institute 3300040134 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 11134484 33187 56 7 103 6 0.0 Metagenome 3300043584 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 082-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043584 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9273 -106.9725 438081035 1238788 588 31 1142 48 Unrestricted 6.98 Metagenome 3300061591 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA River water microbial communities from Olympic Peninsula, Washington, USA - W_RHK2_D5 DOE Joint Genome Institute (JGI) 3300061591 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Aquatic River Freshwater Unclassified River water 48.153 -124.211 409426708 798519 338 50 582 101 Unrestricted 0.0 Metagenome 3300014888 *Microbiome Permanent Draft Lettuce associated viral communities from produce distribution center in Michigan, USA Romaine lettuce associated viral communities from produce distribution center in Michigan, USA - FR8 Michigan State University 3300014888 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Romaine lettuce 1773245 3712 13 4 30 4 SRX1432946 0.0 Metagenome 3300026879 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 50 (SPAdes) DOE Joint Genome Institute (JGI) 3300026879 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 62187980 141659 63 0 121 1 SRX4340972 Unrestricted 0.0 Metagenome 3300002487 *Microbiome Permanent Draft Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland, that are sulfate-reducing Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland - cluster32_Rhodobacteraceae 3300002487 Metagenome Analysis Ray, k=41 released by JGI data releasing policy No Yes rizlan.bernier-latmani@epfl.ch Rizlan Bernier-Latmani No Environmental Terrestrial Clay Deep subsurface Unclassified Deep subsurface 47.379 7.1648 7.5-8.5 4902190 4933 1 0 0 0 0.0 Metagenome 3300040658 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Woodworth, Northern Plains, ND, USA - WOOD_003-M-20140925-COMP-DNA1 Argonne National Laboratory 3300040658 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12823 -99.24136 1553516 4767 18 2 36 4 ERX2134005 0.0 Metagenome 3300015184 *Microbiome Permanent Draft Human fecal microbial communities from infant diaper, Dhaka, Bangladesh Human fecal microbial communities from infant diaper, Dhaka, Bangladesh - DMDT001C Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300015184 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes dhtaft@ucdavis.edu Diana Taft No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant feces 23.8103 90.4125 40066002 54350 53 0 62 4 0.0 Metagenome 3300008448 *Microbiome Permanent Draft Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs University of Michigan 3300008448 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes duhaimem@umich.edu Melissa Duhaime No Environmental Aquatic Lake Freshwater Unclassified freshwater lake 41.7032 -83.2575 505697223 1009693 0 0 0 0 0.0 Metagenome 3300040346 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_016-O-20170717-COMP-DNA1 Battelle Memorial Institute 3300040346 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 4377603 13035 33 2 60 5 0.0 Metagenome 3300023070 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L096-311B-4 DOE Joint Genome Institute (JGI) 3300023070 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 271357728 635439 442 86 836 108 SRX4799435 Unrestricted 7.38 Metagenome 3300012182 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E6 #831 DOE Joint Genome Institute (JGI) 3300012182 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 338478872 636648 362 50 567 63 SRX3241662 Unrestricted 0.0 Metagenome 3300025543 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes) (version 4) DOE Joint Genome Institute (JGI) 3300025543 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 37.1 -76.0972 247850928 568050 0 0 0 0 SRX3362780, SRX3362781, SRX2753471 Unrestricted 0.0 Metagenome 3300029413 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 043_10_29_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029413 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 164463176 235996 192 2 270 3 0.0 Metagenome 3300055482 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.17C.13 SIP fraction DOE Joint Genome Institute (JGI) 3300055482 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 374818458 688624 181 62 307 104 Unrestricted 23.2 Metagenome 2051774006 *Microbiome Permanent Draft Bovine rumen microbial communities from New Zealand Bovine rumen microbial communities from New Zealand - Cows722+723Associated AgResearch Limited 2051774006 Metagenome Analysis released per JGI data release policy No Yes christina.moon@agresearch.co.nz Christina Moon No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -40.35 175.61 57528275 142445 0 0 0 0 0.0 Metagenome 3300045737 *Microbiome Permanent Draft Sediment microbial communities from various rivers and their estuaries in the United States Sediment microbial communities from Sacramento River, California, United States - BTRS19_Sengupta_9F DOE Joint Genome Institute (JGI) 3300045737 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sg.aditi@gmail.com Aditi Sengupta No Environmental Aquatic River Freshwater Sediment sediment 38.3823 -121.5221 664295601 1196225 470 20 843 24 Unrestricted 21.79 Metagenome 3300064891 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 678 in Boyle, Alberta, Canada - S00JY_0697 Microbiome Insights 3300064891 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 54.40412255 -112.5854583 545623646 713750 142 2 208 3 0.0 Metagenome 3300049349 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MBF1 DOE Joint Genome Institute (JGI) 3300049349 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 225856669 625054 287 6 549 9 Unrestricted 7.14 Metagenome 3300012460 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100236 University of Pennsylvania 3300012460 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9896727 27139 21 0 34 1 SRX756665 0.0 Metagenome 3300011588 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00295 Weill Cornell Medical College 3300011588 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.7 -74.01 25312032 37863 16 0 32 0 SRX822268 0.0 Metagenome 3300027934 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Synthetic microbial communities from Ohio, USA - SynthPrep_16_END_DS12_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027934 Metagenome Analysis spades v. 3.11.1 Yes Yes reginalamendella@gmail.com Regina Lamendella No Engineered Bioreactor Activated sludge Aerobic Unclassified Synthetic lake water 40.0 -83.0145 78706262 105439 21 0 14 0 SRX2839601, SRX2839600 Unrestricted 0.0 Metagenome 3300000948 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY77 J. Craig Venter Institute (JCVI) 3300000948 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 892332173 2933844 139 54 460 117 0.0 Metagenome 3300012251 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00815 Weill Cornell Medical College 3300012251 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.76 -73.98 35357518 49737 29 0 42 0 SRX822781 0.0 Metagenome 3300002469 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Microcerotermes parvus P3 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P3 DOE Joint Genome Institute (JGI) 3300002469 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes karen.rossmassler@gmail.com, NNIvanova@lbl.gov; brune@mpi-marburg.mpg.de Karen Rossmassler, Natalia Ivanova; Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut -4.7 11.83 1212366489 3010541 1082 16 2053 25 SRX3328922 Unrestricted 0.0 Metagenome 3300030211 *Microbiome Permanent Draft Ice-cream associated microbial communities from Maryland, United States Ice-cream associated microbial communities from Maryland, United States - 48 _R1 U.S. Food and Drug Administration 3300030211 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Ice-cream associated 38.98 -76.93 3082034 3188 3 0 1 0 0.0 Metagenome 3300018004 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100 DOE Joint Genome Institute (JGI) 3300018004 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 636744646 1136257 386 4 621 10 SRX3960101 Unrestricted 18.1 Metagenome 3300011171 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #285 DOE Joint Genome Institute (JGI) 3300011171 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 70990421 132645 61 1 106 1 SRX2526865 Unrestricted 0.0 Metagenome 3300026135 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_D1_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026135 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Terrestrial Wetlands Soil Unclassified Soil 37.4962 -122.1329 220557608 512184 331 4 556 9 SRX2523670 Unrestricted 0.0 Metagenome 3300020731 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion DOE Joint Genome Institute (JGI) 3300020731 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 140353694 286309 102 46 155 57 Unrestricted 0.0 Metagenome 3300042119 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0218L_E14_082316_1902 DOE Joint Genome Institute (JGI) 3300042119 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.1836 -97.9974 76109422 234639 209 4 404 13 Unrestricted 6.99 Metagenome 3300039030 *Microbiome Permanent Draft Industrial fuel microbial communities from aircraft samples near Hamburg, Germany Industrial fuel microbial communities from aircraft samples near Hamburg, Germany - 180914_BF_01 re-assembly HPI Heinrich-Pette-Institut 3300039030 Metagenome Analysis metaSpades v. 3.1 released by Ines Krohn-Molt No Yes wolfgang.streit@uni-hamburg.de; ines.krohn@uni-hamburg.de Wolfgang Streit; Ines KROHN No Engineered Industrial production Unclassified Engineered product Unclassified Industrial fuel 53.338 9.5152 42450068 48670 4 3 7 4 0.0 Metagenome 3300037398 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10NP15 DOE Joint Genome Institute (JGI) 3300037398 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 1081978168 2578438 915 32 1527 45 SRX9140872 Unrestricted 7.35 Metagenome 3300046453 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere DOE Joint Genome Institute (JGI) 3300046453 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5882 -123.1924 325684012 483518 170 18 225 32 Unrestricted 35.21 Metagenome 3300005155 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F11 DOE Joint Genome Institute (JGI) 3300005155 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 51476183 75250 89 0 85 0 SRX3195100 Unrestricted 0.0 Metagenome 3300026548 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_13_30cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026548 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 1043904314 1867169 581 21 986 39 SRX2728466 Unrestricted 0.0 Metagenome 7000000166 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 765701615 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000166 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 296251 708 0 0 0 0 SRX024891 0.0 Metagenome 3300027630 *Microbiome Permanent Draft Marine microbial communities from oxygen minimum zone in the mesopelagic equatorial Pacific Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_800m (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027630 Metagenome Analysis spades v. 3.11.1 Yes Yes cdupont@jcvi.org Chris L. Dupont No Environmental Aquatic Oceanic Marine Unclassified Marine 8.0 -156.0 394992899 867338 312 21 460 40 SRX1990988 Unrestricted 0.0 Metagenome 7000000639 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764224817 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000639 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 22142554 49228 0 0 0 0 0.0 Metagenome 3300007626 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_C_D2_MG DOE Joint Genome Institute (JGI) 3300007626 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4971 -122.133 575850556 1072125 666 9 1131 12 SRX2753765 Unrestricted 0.0 Metagenome 3300043742 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - SF99_A50 DOE Joint Genome Institute (JGI) 3300043742 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.1601 -62.7975 587260436 1566718 313 10 597 16 Unrestricted 9.49 Metagenome 3300071045 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_026-M-20190702-COMP-DNA1 3300071045 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 6302347 20842 45 6 71 6 0.0 Metagenome 3300043360 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 237-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043360 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9606 -107.0296 611244570 1592892 409 40 827 59 Unrestricted 6.93 Metagenome 3300032100 *Microbiome Permanent Draft Microbial communities from the deep biosphere Freshwater microbial communities from subglacial Lake Whillans, West Antarctica - SLW_14_16cm re-assembly The Marine Biological Laboratory 3300032100 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Subglacial lake Freshwater Unclassified Freshwater -84.267 -153.209 176719911 514418 195 1 390 6 SRX2064700 0.0 Metagenome 3300004257 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 104_HOW12 DOE Joint Genome Institute (JGI) 3300004257 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 84671500 181604 56 1 102 0 SRX2721181 Unrestricted 0.0 Metagenome 3300010042 *Microbiome Permanent Draft Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B DOE Joint Genome Institute (JGI) 3300010042 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes klgravuer@ucdavis.edu Kelly Gravuer No Environmental Terrestrial Grasslands Soil Unclassified Serpentine soil 38.8723 -122.4268 2227619325 4855039 1911 47 3346 93 SRX2525428 Unrestricted 0.0 Metagenome 3300037153 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_July_plot1_rep2 DOE Joint Genome Institute (JGI) 3300037153 Metagenome Analysis metaspades v. 3.13.0 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6539 -80.6288 3787207574 5852293 799 10 1339 27 SRX8179573 Unrestricted 17.56 Metagenome 3300019721 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLC_7-8_MG DOE Joint Genome Institute (JGI) 3300019721 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 108511018 272650 226 18 410 42 SRX3983584 Unrestricted 3.59 Metagenome 3300065662 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 828b in Grassy Lake, Alberta, Canada - S00JY_0504 Microbiome Insights 3300065662 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.425784 -111.460018 37131793 55130 24 0 40 0 0.0 Metagenome 3300028611 *Microbiome Permanent Draft Microbial communities from Yellowstone National Park hot springs 2017 Hot spring sediment microbial communities from Smoking Gun phototrophic mat, Yellowstone National Park, USA - 170626C University of Minnesota 3300028611 Metagenome Analysis SPAdes v. 3.11.0 released by JGI data releasing policy Yes Yes trinityh@umn.edu Trinity Hamilton No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.5199 -110.8115 9.4 108943318 208402 59 0 76 0 0.0 Metagenome 3300048538 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_120125.NP2 DOE Joint Genome Institute (JGI) 3300048538 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 545212306 1214031 418 56 654 90 Unrestricted 12.66 Metagenome 3300028476 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_17JUL2017_LD1 DOE Joint Genome Institute (JGI) 3300028476 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 71991896 133236 6 27 11 39 SRX5345824 Unrestricted 20.04 Metagenome 3300010962 *Microbiome Permanent Draft Subsoil microbial communities from Rio Tinto Huelva, Spain Subsoil microbial communities from Rio Tinto Huelva, Spain - T25 Autonomous University of Barcelona 3300010962 Metagenome Analysis SPAdes-3.8.1-Linux released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Terrestrial Unclassified Geologic Unclassified subsoil 41.18 -8.56 12099291 17939 25 0 24 0 0.0 Metagenome 3300022783 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R1 Version 2 University of New South Wales 3300022783 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au; z5119396@unsw.edu.au Holly Bennett; Viet Hung Nguyen No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 94632489 159674 54 1 78 2 0.0 Metagenome 3300003277 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD DOE Joint Genome Institute (JGI) 3300003277 Metagenome Analysis Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 363036707 868540 287 45 550 86 SRX2564971 Unrestricted 0.0 Metagenome 3300042593 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Cryptotermes dudleyi from BAM Federal Institute for Materials Research and Testing, Berlin, Germany - Cd354 Eurofins MWG Operon 3300042593 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 52.443245 13.287523 550441328 686024 189 21 182 28 0.0 Metagenome 3300035082 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - C8-14 Autonomous University of Barcelona 3300035082 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 85811940 351416 724 1 1238 1 0.0 Metagenome 3300051388 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - ATCcR2D-14 DOE Joint Genome Institute (JGI) 3300051388 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 566002216 840192 379 11 488 19 Unrestricted 47.75 Metagenome 3300059714 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1568A-3 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059714 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2861 -123.7318 175391244 398111 187 62 298 90 SRX2753762 Unrestricted 0.0 Metagenome 3300049748 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB22 DOE Joint Genome Institute (JGI) 3300049748 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 316678981 815086 614 12 1198 17 Unrestricted 8.03 Metagenome 3300025911 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025911 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 2621717289 6309551 1292 113 2431 205 SRX3203321 Unrestricted 0.0 Metagenome 3300032084 *Microbiome Finished The variation of viral communities during algal boom from the coastal of Qingdao, China Marine viral communities from the Yellow sea, Qingdao, China - XG0727 Beijing Novogene Bioinformatics Technology Co., Ltd 3300032084 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes foodyqw_12@163.com Yang Qingwei No Environmental Aquatic Coastal Marine Unclassified marine 36.0767 120.3087 233168055 405512 41 3 98 7 0.0 Metagenome 3300020396 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000767 (ERX555915-ERR599122) CEA Genoscope 3300020396 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -47.1208 -57.8265 922173015 2072315 404 72 689 140 0.0 Metagenome 3300049171 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S32_B_D89 hydrophilic DOE Joint Genome Institute (JGI) 3300049171 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 487027279 738910 185 9 260 16 Unrestricted 29.77 Metagenome 3300001623 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF035 DOE Joint Genome Institute (JGI) 3300001623 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 1477303 5255 11 5 24 5 SRX2014380 Unrestricted 0.0 Metagenome 3300003510 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS857_Anemone_DNA 3300003510 Metagenome Analysis CLC genomics workbench released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933 -130.01379 28942771 68895 35 7 64 14 0.0 Metagenome 3300069253 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Chase Lake Wetlands, North Dakota, USA - WOOD_005-M-20210708-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069253 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 47.149339 -99.251928 3421221042 8535320 1980 67 3682 124 0.0 Metagenome 3300045119 *Microbiome Permanent Draft Forest soil microbial communities from boreal-temperate forests in Minnesota, USA Forest soil microbial communities from Cloquet Forestry Center, Minnesota, USA - Cloquet AMB CO D4 DOE Joint Genome Institute (JGI) 3300045119 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pankaj.trivedi@colostate.edu Pankaj Trivedi No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 46.31 -92.3 837506092 1432668 319 22 546 25 Unrestricted 14.71 Metagenome 3300013358 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01246 Weill Cornell Medical College 3300013358 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.6 -73.97 15958211 25795 5 0 10 0 SRX823201 0.0 Metagenome 3300018002 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40 DOE Joint Genome Institute (JGI) 3300018002 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 582298802 1040013 282 4 549 10 SRX3960105 Unrestricted 21.91 Metagenome 3300057177 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2021-2005 DOE Joint Genome Institute (JGI) 3300057177 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.82726 -83.19041 278717626 654343 192 69 359 125 Unrestricted 36.37 Metagenome 3300002155 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX- M7 DOE Joint Genome Institute (JGI) 3300002155 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 227111689 693632 912 63 1729 102 SRX2553568, SRX2553567, SRX2553569, SRX2553566 Unrestricted 0.0 Metagenome 3300043744 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - SF99_A150L DOE Joint Genome Institute (JGI) 3300043744 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.1604 -62.7971 587829409 1572094 301 7 578 12 Unrestricted 9.47 Metagenome 3300013646 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00867 Weill Cornell Medical College 3300013646 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.69 -73.98 16247904 17541 11 0 15 0 SRX822833 0.0 Metagenome 3300070310 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_042-M-20171108-COMP-DNA1 3300070310 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 93755437 248279 112 4 191 7 0.0 Metagenome 3300038523 *Microbiome Permanent Draft Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China - KO1 v2 Sun Yat-Sen University 3300038523 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy No Yes yuxiaoli92@163.com Xiaoli Yu No Environmental Aquatic Intertidal zone Marine Mangrove sediment mangrove sediment 23.45 116.43 89806339 122119 49 5 78 7 0.0 Metagenome 3300046701 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-C2 10-14 DOE Joint Genome Institute (JGI) 3300046701 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0434 633486469 986886 244 7 385 14 Restricted 11.93 Metagenome 3300035100 *Microbiome Permanent Draft Seawater and sediment microbial communities from various locations Seawater microbial communities from eastern tropical North Pacific Ocean - AMALJGI-DNA-8 DOE Joint Genome Institute (JGI) 3300035100 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bbw@princeton.edu Bess Ward No Environmental Aquatic Oceanic Marine Unclassified seawater 17.206 -110.7114 791232789 1594145 500 59 976 114 SRX8298304 Unrestricted 16.47 Metagenome 3300031707 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20 DOE Joint Genome Institute (JGI) 3300031707 Metagenome Analysis spades v. 3.12.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5895 -110.359 3095577531 6217751 1596 14 2643 24 SRX6380994 Unrestricted 14.38 Metagenome 3300014633 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from two oxygen tension regimens in Lake Washington, USA Freshwater lake sediment microbial communities from low oxygen tension regimen in Lake Washington, USA - LO rep. 1 week 3 - L1_3_WGA University of Washington 3300014633 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 47.631156 -122.254601 14123031 30359 7 2 13 2 0.0 Metagenome 3300013193 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100608 University of Pennsylvania 3300013193 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 40061485 95315 54 0 78 0 SRX756486 0.0 Metagenome 3300008335 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 508703490 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008335 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 55546708 71530 36 1 36 5 0.0 Metagenome 3300026367 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake in Antarctica - Synechococcus sp. Ace-P (Hybrid Assembly) DOE Joint Genome Institute (JGI) 3300026367 Metagenome Analysis SPAdes v. 3.10.1 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline lake -68.4717 78.1877 178338637 211148 74 2 82 2 Unrestricted 5.74 Metagenome 3300020575 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 20MAY2010 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020575 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 201144617 398980 113 32 195 67 SRX1981962 Unrestricted 0.0 Metagenome 3300010044 *Microbiome Permanent Draft Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60 DOE Joint Genome Institute (JGI) 3300010044 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes klgravuer@ucdavis.edu Kelly Gravuer No Environmental Terrestrial Grasslands Soil Unclassified Serpentine soil 38.8711 -122.4276 2612322147 5966818 2020 17 3600 46 SRX2525423 Unrestricted 0.0 Metagenome 3300042851 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186 NMDC pilot DOE Joint Genome Institute (JGI) 3300042851 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92030701 -106.94839471 1327061813 3015588 606 11 1082 19 SRX5354721 0.0 Metagenome 2140918030 *Microbiome Permanent Draft Freshwater lake biofilm microbial communities from Frasassi caves, Italy in anoxic conditions Anoxic freshwater biofilm from cave wall in Lago Infinito, Frasassi caves, Italy Pennsylvania State University 2140918030 Metagenome Analysis Unknown released per JGI data release policy No Yes jlm80@psu.edu Jennifer Macalady No Environmental Aquatic Microbialites Freshwater Unclassified Freshwater lake 43.427592 12.93869 88283193 178857 144 6 243 0 0.0 Metagenome 3300029501 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005363-20 Beijing Genomics Institute (BGI) 3300029501 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 83358072 97423 70 0 100 0 0.0 Metagenome 3300026016 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026016 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.04565 -121.866287 74687304 195263 103 0 201 0 SRX8048277 Unrestricted 0.0 Metagenome 3300007174 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Lab enriched deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Halanaerobium induction DOE Joint Genome Institute (JGI) 3300007174 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 33918434 135915 1018 0 1698 0 SRX2752458 Unrestricted 0.0 Metagenome 3300059712 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1569A-3 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059712 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2861 -123.7318 171850820 381696 172 50 280 72 SRX2753763 Unrestricted 0.0 Metagenome 3300045593 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_CSTR_168 DOE Joint Genome Institute (JGI) 3300045593 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 121052979 176528 119 5 145 7 SRX12655961 Unrestricted 101.59 Metagenome 3300025783 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH08Jun09 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025783 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 136214058 279054 100 28 130 39 SRX2565944 Unrestricted 0.0 Metagenome 3300033486 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A DOE Joint Genome Institute (JGI) 3300033486 Metagenome Analysis spades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified soil 41.3776 -82.512 4374448615 10750104 2892 9 5299 13 SRX6871091 Unrestricted 7.38 Metagenome 3300032082 *Microbiome Finished The variation of viral communities during algal boom from the coastal of Qingdao, China Marine viral communities from the Yellow sea, Qingdao, China - ZQ0831 Beijing Novogene Bioinformatics Technology Co., Ltd 3300032082 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes foodyqw_12@163.com Yang Qingwei No Environmental Aquatic Coastal Marine Unclassified marine 36.062 120.315 427558470 735311 105 2 159 2 0.0 Metagenome 3300010964 *Microbiome Permanent Draft Subsoil microbial communities from Rio Tinto Huelva, Spain Subsoil microbial communities from Rio Tinto Huelva, Spain - T210 Autonomous University of Barcelona 3300010964 Metagenome Analysis SPAdes-3.8.1-Linux released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Terrestrial Unclassified Geologic Unclassified subsoil 37.26 -6.94 32303871 31122 22 0 26 0 0.0 Metagenome 3300029399 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 001_6_3_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029399 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 116372553 159513 121 2 181 0 0.0 Metagenome 3300009875 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA3 University of New South Wales 3300009875 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 34784885 50268 19 0 29 1 0.0 Metagenome 3300022911 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L064-202C-5 DOE Joint Genome Institute (JGI) 3300022911 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 509141744 1188380 566 103 1021 157 SRX4801193 Unrestricted 7.74 Metagenome 3300011748 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00913 Weill Cornell Medical College 3300011748 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.74 -73.87 26279871 34258 14 0 26 0 SRX822876 0.0 Metagenome 7000000038 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 160400887 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000038 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 220664319 383973 0 0 0 0 0.0 Metagenome 3300035084 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 DOE Joint Genome Institute (JGI) 3300035084 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 39.6589 -79.9058 682351589 1868396 795 78 1460 137 SRX8288948 Unrestricted 6.58 Metagenome 3300026788 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07.2A5-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300026788 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 14163197 49732 63 2 104 1 SRX2576214 Unrestricted 0.0 Metagenome 3300006975 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 765337473 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006975 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2154765 2740 1 0 4 0 0.0 Metagenome 3300017761 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N DOE Joint Genome Institute (JGI) 3300017761 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 445282900 1041482 5 0 10 2 SRX7205064 Unrestricted 49.83 Metagenome 3300004094 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius vacuus BELIZE.1 (version 2) DOE Joint Genome Institute (JGI) 3300004094 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 636292731 1348844 56 19 80 19 SRX3340615, SRX3340614 Unrestricted 0.0 Metagenome 3300043582 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 068-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043582 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9271 -106.9793 320048757 886375 523 27 1000 55 Unrestricted 8.38 Metagenome 3300020120 *Microbiome Permanent Draft Soil bacterial communities from Switchgrass agricultural field in Lux Arbor, Michigan, USA Soil bacterial communities from Switchgrass agricultural field in Lux Arbor, Michigan, USA - site F4, fertilized Michigan State University 3300020120 Metagenome Analysis Megahit released by JGI data releasing policy Yes Yes aarongaroutte@gmail.com Aaron J. Garoutte No Environmental Terrestrial Unclassified Soil Agricultural land Soil 42.4891 -85.4641 4325037409 7496212 1118 25 1793 58 0.0 Metagenome 3300032276 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Coastal sediment microbial communities from Maine, United States - Phippsburg worm burrow 1 DOE Joint Genome Institute (JGI) 3300032276 Metagenome Analysis spades v. 3.13.0 Yes Yes jbeam@bigelow.org; demerson@bigelow.org Jake Beam; David Emerson No Environmental Aquatic Coastal Marine Sediment worm burrow 43.8293 -69.8133 1885526036 4367828 1507 78 2615 135 SRX5822356 Unrestricted 8.01 Metagenome 3300014779 *Microbiome Permanent Draft Synthetic microbial community for library methods comparison from University of Liverpool, United Kingdom Synthetic microbial communities for library methods comparison from University of Liverpool, United Kingdom - Mg4 University of Liverpool 3300014779 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 53.405936 -2.9677609 95897884 188736 62 0 85 0 ERX1325887 0.0 Metagenome 3300005487 *Microbiome Finished Sediment methylotrophic communities from Lake Washington, Seattle, Washington, USA Sediment microbial communities from Lake Washington, Seattle, Washington, USA - Methanol enrichment DOE Joint Genome Institute (JGI) 3300005487 Metagenome Analysis LUCY, PGA Assembler released based on JGI ITS Yes Yes milachis@u.washington.edu, milachis@u.washington.edu; lidstrom@uw.edu Lumila Chistoserdova, Ludmila Chistoserdova; Mary Lidstrom Yes 18711340 Environmental Aquatic Lentic Freshwater Sediment Sediment 47.63458 -122.26655 50205742 96171 16 2 44 3 Unrestricted 0.0 Metagenome 3300000136 *Microbiome Draft Marine microbial communities from chronically polluted sediments in four geographic locations Marine microbial communities from chronically polluted sediments in Antarctica - King George Island site S1 sample ANT 02_9.5m DOE Joint Genome Institute (JGI) 3300000136 Metagenome Analysis released based on JGI ITS Yes Yes hdionisi@cenpat.edu.ar Hebe Dionisi No Environmental Aquatic Intertidal zone Marine Sediment Marine -62.230512 -58.656117 425245463 978889 613 61 1145 77 Unrestricted 0.0 Metagenome 3300005608 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF84A DOE Joint Genome Institute (JGI) 3300005608 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 410704072 1330214 386 407 591 785 SRX2781885 Unrestricted 0.0 Metagenome 3300000669 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 24 DOE Joint Genome Institute (JGI) 3300000669 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 4044798 12957 29 0 40 0 SRX4340637 Unrestricted 0.0 Metagenome 3300003750 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_6/14/2005_ DNA DOE Joint Genome Institute (JGI) 3300003750 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 131716788 258478 171 8 241 11 SRX2518136 Unrestricted 0.0 Metagenome 3300012184 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ134 (22.06) DOE Joint Genome Institute (JGI) 3300012184 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.0306 163.7174 590311862 1345267 333 0 587 2 SRX3369410 Unrestricted 0.0 Metagenome 3300024921 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 33_HOW6 (SPAdes) DOE Joint Genome Institute (JGI) 3300024921 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 58307075 84994 41 1 41 1 SRX2720410 Unrestricted 0.0 Metagenome 3300015182 *Microbiome Permanent Draft Human fecal microbial communities from infant diaper, Dhaka, Bangladesh Human fecal microbial communities from infant diaper, Dhaka, Bangladesh - DMDT001L Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300015182 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes dhtaft@ucdavis.edu Diana Taft No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant feces 23.8103 90.4125 24361603 39520 25 0 44 0 0.0 Metagenome 3300049056 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - G13_A_BS (version 2) DOE Joint Genome Institute (JGI) 3300049056 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 137580346 312783 355 8 796 15 Unrestricted 0.0 Metagenome 3300004770 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Aug07 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300004770 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 445289327 1091428 257 99 369 145 SRX2518390 Unrestricted 0.0 Metagenome 3300013759 *Microbiome Permanent Draft Intertidal thrombolitic mat microbial community from Highborne Cay, Bahamas Intertidal thrombolitic mat microbial community from Highborne Cay, Bahamas - Thr-A University of Florida 3300013759 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Intertidal zone Marine Microbialites Intertidal thrombolitic mat 24.43 -76.49 265928561 609287 109 44 261 99 SRX268149 0.0 Metagenome 3300002009 *Microbiome Permanent Draft Nitrate-dependent Fe(III)-oxidizing enrichment culture microbial communities MPI/Straub Culture Metagenome Annotation 3300002009 Metagenome Analysis CLC Genomics Workbench Public release - Shaomei He (Feb 25, 2016) Yes Yes eroden@geology.wisc.edu Eric Roden No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Nitrate-dependent Fe(III)-oxidizing enrichment culture 53.0769 8.8089 21648289 27680 6 0 12 0 0.0 Metagenome 3300042737 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - Q_c23.1 Re-assembly Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042737 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1237 -89.1404 1011471572 897878 2 9 5 14 SRX5234777 0.0 Metagenome 3300053086 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere DOE Joint Genome Institute (JGI) 3300053086 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.587539 -123.193689 1488303608 2636889 324 299 481 398 Unrestricted 25.07 Metagenome 3300011349 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100435 University of Pennsylvania 3300011349 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14698919 27707 12 0 17 1 SRX756563 0.0 Metagenome 3300054097 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_13_150 re-annotation DOE Joint Genome Institute (JGI) 3300054097 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 343171009 645316 205 7 381 7 SRX3003648 0.0 Metagenome 3300055484 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.4W.12 SIP fraction DOE Joint Genome Institute (JGI) 3300055484 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 191868710 324013 161 41 251 70 Unrestricted 15.54 Metagenome 3300001275 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion v3 (version 3) DOE Joint Genome Institute (JGI) 3300001275 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 51617949 115688 75 21 130 38 Unrestricted 0.0 Metagenome 3300029798 *Microbiome Permanent Draft Freshwater lake microbial communities from Alinen Mustajarvi, Finland Freshwater lake microbial communities from Alinen Mustajarvi, Finland - AM11 Uppsala University 3300029798 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 61.208142 25.113609 302805511 589200 177 3 332 8 SRX1837104 0.0 Metagenome 3300049588 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 DOE Joint Genome Institute (JGI) 3300049588 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.407926 -82.180036 1740083232 2882316 621 13 1107 19 Unrestricted 13.92 Metagenome 3300028195 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_200 DOE Joint Genome Institute (JGI) 3300028195 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified marine 48.6 -123.5 526187208 931089 386 2 585 4 SRX5244712 Unrestricted 21.88 Metagenome 3300012000 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier in Georgia, USA Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A Georgia Institute of Technology 3300012000 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater 34.21 -83.96 334099085 634088 102 6 155 12 SRX331950 0.0 Metagenome 3300009666 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC077_MetaG DOE Joint Genome Institute (JGI) 3300009666 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 42.35 -70.96 798233492 1325226 947 1 1374 2 SRX2338987 Unrestricted 0.0 Metagenome 3300009139 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from Kermadec Trench to uncover new lineages of life (NeLLi) - N074 metaG DOE Joint Genome Institute (JGI) 3300009139 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes eaeloefadrosh@lbl.gov, EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Ocean trench Marine Sediment Deep subsurface -34.3456 -178.1771 2341640481 4568178 1197 26 2019 47 SRX3203976 Unrestricted 0.0 Metagenome 3300015251 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT293_16_10D DOE Joint Genome Institute (JGI) 3300015251 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9228 -106.9508 121009264 305432 319 14 684 27 SRX3780468 Unrestricted 4.96 Metagenome 3300001340 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B DOE Joint Genome Institute (JGI) 3300001340 Metagenome Analysis Yes Yes binskeep@montana.edu, binskeep@montana.edu; jim.fredrickson@pnnl.gov William Inskeep, William P. Inskeep; Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hypersaline mat 44.376 -110.69 264133541 479165 156 4 239 4 SRX3316449 Unrestricted 0.0 Metagenome 3300027932 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_virus_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027932 Metagenome Analysis spades v. 3.11.1 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.7315 -110.7113 39288453 87318 27 1 53 0 SRX2917381 Unrestricted 0.0 Metagenome 3300000687 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 50 DOE Joint Genome Institute (JGI) 3300000687 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 6014814 20004 28 0 54 0 SRX4340972 Unrestricted 0.0 Metagenome 3300000408 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Coal-degrading lab enrichment microbial communities from Bowden, Alberta, Canada - methanogenic culture: QSAFCN2 McGill University 3300000408 Metagenome Analysis released per user request No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Lab enrichment Anaerobic media Defined media Unclassified Hydrocarbon resource environments 51.9740275 -113.8051889 18846681 25476 32 0 51 0 0.0 Metagenome 3300005469 *Microbiome Permanent Draft Mouse cecum microbial communities from Vienna, Austria Mouse cecum microbial communities from Vienna, Austria - Glucosamine amended microcosms incubated with D2O DOE Joint Genome Institute (JGI) 3300005469 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes wagner@microbial-ecology.net, wagner@microbial-ecology.net; romans@mit.edu Michael Wagner, Michael Wagner; Roman Stocker No Host-associated Mammals Large intestine Digestive system Cecum Mouse cecum 48.2 16.37 414985242 701784 1012 3 1569 6 SRX2838879 Unrestricted 0.0 Metagenome 3300042458 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME23May2016-rr0860 DOE Joint Genome Institute (JGI) 3300042458 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 844080568 1287554 184 48 304 65 Unrestricted 26.22 Metagenome 3300037219 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 P-2-S DOE Joint Genome Institute (JGI) 3300037219 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3535 19.0473 929740846 1938399 378 62 681 93 SRX8147230 Unrestricted 7.96 Metagenome 3300047495 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Western Region, Iceland - Sphagnum angustifolium NH_ANG_ICE DOE Joint Genome Institute (JGI) 3300047495 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.583 -21.9821 1183767255 2150704 516 141 824 250 SRX14786509 Unrestricted 9.19 Metagenome 3300050347 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 P2 1-5 DOE Joint Genome Institute (JGI) 3300050347 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3535 19.0472 796280682 1218461 192 22 330 37 Restricted 13.34 Metagenome 3300039185 *Microbiome Permanent Draft Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China - KO2 v2 Sun Yat-Sen University 3300039185 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy No Yes yuxiaoli92@163.com Xiaoli Yu No Environmental Aquatic Intertidal zone Marine Mangrove sediment mangrove sediment 23.45 116.43 128657909 172252 65 3 100 3 0.0 Metagenome 3300038788 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - WEM-2_at_0-1_cm Genome Quebec 3300038788 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89896 -73.80984 380086106 1000112 582 34 1200 71 0.0 Metagenome 3300011664 *Microbiome Permanent Draft Fossil microbial communities from human samples from several locations Fossil microbial communities from tooth of medieval black death victim, London UK - 8291 McMaster University 3300011664 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skeletonized remains Remains Tooth Fossill 19280091 47907 21 4 33 3 SRX476577 0.0 Metagenome 3300008302 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 338793263 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008302 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 44789872 68196 37 0 42 0 0.0 Metagenome 3300026080 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_NADW_ad_2500m_LV_A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026080 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 316501405 639567 288 14 453 22 SRX2776491 Unrestricted 0.0 Metagenome 3300049662 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control DOE Joint Genome Institute (JGI) 3300049662 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 150184945 319602 254 17 506 27 Unrestricted 12.71 Metagenome 3300021124 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 04OCT2008 epilimnion DOE Joint Genome Institute (JGI) 3300021124 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 74100872 164053 53 15 80 24 Unrestricted 0.0 Metagenome 3300001897 *Microbiome Permanent Draft Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils (2) Desert soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils - Control dataset for oil perturbed soil, Sample 2 3300001897 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Terrestrial Unclassified Soil Desert Grassland soil 23.850674 69.734802 0 0 0 0 0 0 0.0 Metagenome 7000000414 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 764892411 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000414 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 3256374 7372 0 0 0 0 SRX024149, SRX098538 0.0 Metagenome 3300047200 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2014 IH-SH_18cm DOE Joint Genome Institute (JGI) 3300047200 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.2129 19.0247 182153478 341312 198 5 375 5 Restricted 21.34 Metagenome 3300004078 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleB_D2 DOE Joint Genome Institute (JGI) 3300004078 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.107521 -121.649681 907368900 3149793 1221 16 2570 32 SRX7146198 Unrestricted 0.0 Metagenome 3300043409 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Crooked River, Prineville, Oregon, USA - crookedriver_2019_sw_WHONDRS-S19S_0041 DOE Joint Genome Institute (JGI) 3300043409 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 44.3 -120.8582 551918194 956191 314 37 540 73 Unrestricted 20.46 Metagenome 3300023214 *Microbiome Permanent Draft Solar saltern microbial communities from the Namib Desert Sediment microbial communities from solar saltern in Namib Desert, Swakopmund, Namibia - Eisfeld sink 2016 Genewiz Inc. 3300023214 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat and sediment -22.4851944 14.57133333 911290053 1283765 259 1 412 6 0.0 Metagenome 3300070386 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_013-O-20190717-COMP-DNA1 3300070386 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 10040327 31891 50 11 86 14 0.0 Metagenome 3300027338 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius sp. 4 HERON ISLAND (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027338 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 480867638 506418 13 3 13 3 SRX3340881 Unrestricted 0.0 Metagenome 3300009052 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1550A-02 DOE Joint Genome Institute (JGI) 3300009052 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2328 -123.878 381287376 723557 409 36 667 67 SRX2753723 Unrestricted 0.0 Metagenome 3300029090 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 179_4M Beijing Genomics Institute (BGI) 3300029090 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 74364343 78148 46 0 64 0 ERX490970 0.0 Metagenome 3300027673 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 8/11/14 B green DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027673 Metagenome Analysis spades v. 3.11.1 Yes Yes ebyoung@uwm.edu Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 536921534 1012888 366 119 525 167 SRX2747779 Unrestricted 0.0 Metagenome 3300026104 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3611_800 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026104 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic 0.0014 -33.4979 108575128 205734 47 23 18 46 SRX2753929 Unrestricted 0.0 Metagenome 3300043668 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 402-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043668 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9758 -107.0635 679961762 1708137 489 43 861 76 Unrestricted 7.22 Metagenome 3300042253 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D326_3 DOE Joint Genome Institute (JGI) 3300042253 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 209741946 300988 178 7 221 7 Unrestricted 74.67 Metagenome 3300018035 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10 DOE Joint Genome Institute (JGI) 3300018035 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 1226869732 2369569 602 34 1049 55 SRX3960221 Unrestricted 7.02 Metagenome 3300000203 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion v1 DOE Joint Genome Institute (JGI) 3300000203 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.0412 -89.6864 82338961 183883 67 13 139 31 Unrestricted 0.0 Metagenome 3300025528 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-6-D (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025528 Metagenome Analysis spades v. 3.11.1 Yes Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 191876369 294578 183 6 233 13 SRX2557341 Unrestricted 0.0 Metagenome 3300029774 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 038_10_29_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029774 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 197816815 265518 197 0 272 0 0.0 Metagenome 3300003586 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_100m_DNA DOE Joint Genome Institute (JGI) 3300003586 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 255696728 525837 268 4 419 5 Unrestricted 0.0 Metagenome 3300043615 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 170-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043615 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9374 -107.0117 395710149 1157758 487 24 904 33 Unrestricted 6.56 Metagenome 3300040132 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA Prairie soil microbial communities from Boone County, Iowa, USA - P46-Micro-July2012 Iowa State University 3300040132 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land Prairie soil 42.01375 -93.783837 11208730 36954 81 3 156 2 0.0 Metagenome 3300000923 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and E1 DOE Joint Genome Institute (JGI) 3300000923 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 97973089 158949 84 0 143 0 SRX3311547 Unrestricted 0.0 Metagenome 3300039073 *Microbiome Permanent Draft Freshwater lake viral communities from Lake Michigan, near Chicago, USA Freshwater lake viral communities from Lake Michigan, near Chicago, USA- Montrose140708.1V Genewiz Inc., Loyola University 3300039073 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.9668 -87.637 24171534 50253 20 0 34 0 0.0 Metagenome 3300044483 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - AT4-9-26-19 DOE Joint Genome Institute (JGI) 3300044483 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.0513 -120.2541 593596977 1400110 478 53 792 85 Restricted 8.07 Metagenome 3300056819 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - APS4_20W_T0 DOE Joint Genome Institute (JGI) 3300056819 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 1909100313 2673595 520 133 723 207 Unrestricted 20.86 Metagenome 3300009297 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T10 (3) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2) Shell Corporation 3300009297 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 145543302 474893 155 0 314 0 0.0 Metagenome 3300007353 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 765013792 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007353 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 131415047 162600 122 0 163 0 0.0 Metagenome 3300014972 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 546_M Beijing Genomics Institute (BGI) 3300014972 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 60628998 85533 33 2 47 4 ERX491198 0.0 Metagenome 3300027225 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1549A-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027225 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2322 -123.8817 138715428 286946 156 30 257 48 SRX2753719 Unrestricted 0.0 Metagenome 3300009621 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_10_150 DOE Joint Genome Institute (JGI) 3300009621 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 376038450 609514 222 0 392 3 SRX3003287 Unrestricted 0.0 Metagenome 3300013952 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100137 University of Pennsylvania 3300013952 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 2598179 7134 4 3 11 9 SRX756395 0.0 Metagenome 3300027905 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027905 Metagenome Analysis spades v. 3.11.1 Yes Yes Michael.Pester@dsmz.de Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 2781728283 5606269 781 8 1274 18 Unrestricted 0.0 Metagenome 3300069458 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_003-M-20160823-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069458 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 30124868 96697 100 13 210 21 0.0 Metagenome 3300026523 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_16_20cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026523 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 584404562 1066300 460 9 808 9 SRX2728780 Unrestricted 0.0 Metagenome 3300011960 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00646 Weill Cornell Medical College 3300011960 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.79 -73.97 43059431 78763 18 0 20 0 SRX822613 0.0 Metagenome 3300038367 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18B_5_16_9 mgh University of Alberta 3300038367 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 56956594 74125 28 3 36 3 0.0 Metagenome 3300023033 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E0 DOE Joint Genome Institute (JGI) 3300023033 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Elk feces 38.04 -122.5 65878509 162344 327 1 626 2 SRX4415390 Unrestricted 7.79 Metagenome 3300017726 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 4 SPOT_SRF_2009-09-24 DOE Joint Genome Institute (JGI) 3300017726 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 234527799 553419 60 32 115 55 SRX7207076, SRX7207077 Unrestricted 0.0 Metagenome 3300021503 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-6-7_MG DOE Joint Genome Institute (JGI) 3300021503 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.0114 -110.5956 175339565 362848 196 1 311 8 SRX3982301 Unrestricted 13.02 Metagenome 3300012591 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100261 University of Pennsylvania 3300012591 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17725487 37399 12 0 17 0 SRX756640 0.0 Metagenome 3300001049 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP2159 DOE Joint Genome Institute (JGI) 3300001049 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 12.0 -108.06 25131037 65203 46 0 119 0 SRX1982137 Unrestricted 0.0 Metagenome 3300047624 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA097-BCT DOE Joint Genome Institute (JGI) 3300047624 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6779 -83.4786 404361686 1032893 255 32 466 59 Unrestricted 8.7 Metagenome 3300024046 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant dump, University of Wisconsin, Madison, United States - 1B50A (version 2) DOE Joint Genome Institute (JGI) 3300024046 Metagenome Analysis spades v. 3.11.1 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0758 -89.4125 125853187 177725 76 9 102 11 SRX4821864 Unrestricted 0.0 Metagenome 3300012309 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100456 University of Pennsylvania 3300012309 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9778178 24244 15 0 39 0 SRX756542 0.0 Metagenome 3300006287 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2 of subject 764325968 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006287 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 9441287 27179 26 0 53 0 0.0 Metagenome 3300001969 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Yucatan Channel, Mexico - GS017 J. Craig Venter Institute (JCVI) 3300001969 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Oceanic Marine Unclassified Marine 20.5225 -85.41361 174719720 322314 159 3 205 1 0.0 Metagenome 3300049723 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 E3 1-5 DOE Joint Genome Institute (JGI) 3300049723 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.0466 123111350 214826 154 16 306 20 Restricted 16.6 Metagenome 3300027739 *Microbiome Permanent Draft Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Medium cellulose week 11 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027739 Metagenome Analysis spades v. 3.11.1 Yes Yes rallen2@staffmail.ed.ac.uk Rosalind Allen No Environmental Aquatic Pond Freshwater Sediment Freshwater 55.9225 -3.1724 658212244 1416586 748 37 1203 51 SRX7158207 Unrestricted 0.0 Metagenome 7000000730 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 2, subject 159490532 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000730 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 27394920 37934 0 0 0 0 SRX024539, SRX024540 0.0 Metagenome 3300030508 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_2 DOE Joint Genome Institute (JGI) 3300030508 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 768137449 1569968 471 172 730 228 SRX5799193 Unrestricted 10.83 Metagenome 3300002300 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 27SEP2009 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002300 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 20819402 46786 48 9 94 15 SRX1988265 Unrestricted 0.0 Metagenome 3300040350 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Mid-Atlantic, VA, USA - SCBI_006-M-20170717-COMP-DNA1 Battelle Memorial Institute 3300040350 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89292 -78.1395 4347108 13232 30 3 68 6 0.0 Metagenome 3300024966 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 128_HOW14 (SPAdes) DOE Joint Genome Institute (JGI) 3300024966 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 106103887 152400 51 0 53 0 SRX2722001 Unrestricted 0.0 Metagenome 3300006005 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T2_25-Nov-14 DOE Joint Genome Institute (JGI) 3300006005 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 93764425 347312 266 38 507 71 SRX2838882 Unrestricted 0.0 Metagenome 3300027852 *Microbiome Permanent Draft Marine microbial communities from the Santa Barbara Channel oil seeps Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 7 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027852 Metagenome Analysis spades v. 3.11.1 Yes Yes mhess@ucdavis.edu Matthias Hess Yes 25197496 Environmental Aquatic Oil seeps Marine Unclassified Marine 34.39225 -119.845662 1548697659 3038451 1040 21 1647 35 SRX2554729 Unrestricted 0.0 Metagenome 3300049681 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_B_3_drought DOE Joint Genome Institute (JGI) 3300049681 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 189844827 438276 378 19 694 49 Unrestricted 13.49 Metagenome 3300042163 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A7 University of California, Davis 3300042163 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 202832163 578491 296 4 504 10 0.0 Metagenome 3300007890 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 158742018 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007890 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 974718 2837 2 0 9 1 SRX023634, SRX023633 0.0 Metagenome 7000000375 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 764588959 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000375 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 1296843 1266 0 0 0 0 0.0 Metagenome 3300011433 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT300_2 DOE Joint Genome Institute (JGI) 3300011433 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.978 -107.0026 426684313 983731 458 26 948 61 SRX3539337 Unrestricted 0.0 Metagenome 3300034788 *Microbiome Permanent Draft Marine planktonic microbial communities from Bay of Bengal, Indian Ocean Marine planktonic microbial communities from Bay of Bengal, Indian Ocean - 3J (SRX5580380-SRR8790595) Nanyang Technological University 3300034788 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released by JGI data releasing policy Yes Yes flauro@ntu.edu.sg Federico Lauro No Environmental Aquatic Unclassified Marine Unclassified Marine planktonic 2.94 86.36 588903878 1238962 454 213 716 300 0.0 Metagenome 3300006793 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG DOE Joint Genome Institute (JGI) 3300006793 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.51 -76.2 620069830 1406459 51 0 77 2 SRX2928922 Unrestricted 0.0 Metagenome 3300013805 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Human oral microbial communities from various locations - University of British Columbia - SCG25 University of British Columbia 3300013805 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Unclassified Human oral 358184 1057 1 0 6 0 SRX143134 0.0 Metagenome 3300036921 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5SB15 DOE Joint Genome Institute (JGI) 3300036921 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 286267336 773083 523 42 857 47 SRX8379443 Unrestricted 5.11 Metagenome 2124908008 *Microbiome Draft Soil microbial communities from FACE and OTC sites in USA Soil microbial communities from sample at FACE Site Metagenome WIR_Elev2 DOE Joint Genome Institute (JGI) 2124908008 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes kuske@lanl.gov Cheryl Kuske No Environmental Terrestrial Unclassified Soil Unclassified Soil 45.68 -89.63 380892539 1038025 545 38 815 0 Unrestricted 0.0 Metagenome 3300041927 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDBack_2015_DNA Marine Biological Laboratory 3300041927 Metagenome Analysis IDBA_UD v. 1.1.3 released by JGI data releasing policy No Yes cfortunato@gmail.com; elks@mit.edu Caroline Fortunato; Sabrina Elkassas Yes 29205750 Environmental Aquatic Oceanic Marine Aphotic zone Background seawater 45.9372 -130.082 327079780 706973 238 108 387 207 0.0 Metagenome 3300027249 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1557A-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027249 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2763 -124.0055 73000410 173306 169 44 260 89 Unrestricted 23.15 Metagenome 7000000240 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764224817 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000240 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 145245064 254900 0 0 0 0 0.0 Metagenome 3300008078 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159632143 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008078 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 105642860 152725 74 0 102 0 0.0 Metagenome 3300032026 *Microbiome Permanent Draft Testing DNA extraction from Arctic samples project reference metagenomes Permafrost active layer microbial community from Axel Heiberg Island, Nunavut, Canada - polygon interior 5cm, replicate 3 SPU crude DNA McGill University 3300032026 Metagenome Analysis Canu v. 1.7.1 released by Isabelle Raymond-Bouchard No Yes isabelle.raymond-bouchard@mail.mcgill.ca Isabelle Raymond-Bouchard No Environmental Terrestrial Unclassified Soil Permafrost Permafrost active layer 79.416111 -90.758333 4591845 11554 0 0 0 0 0.0 Metagenome 3300023440 *Microbiome Permanent Draft Hydrothermal Fe-rich Mat Reference Genomes Hydrothermal Fe-rich mat microbial community from Rainbow Site, Mid-Atlantic Ridge, Atlantic Ocean - 664-BS3 University of Delaware 3300023440 Metagenome Analysis metaSPAdes v. 3.10.0 Metagenomes associated with bioRxiv doi:10.1101/722066 Yes Yes mcallis@uw.edu Sean McAllister No Environmental Aquatic Hydrothermal vents Marine Microbial mats Hydrothermal Fe-rich mat 36.229324 -33.902768 281608188 421507 162 0 218 1 0.0 Metagenome 3300009783 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC052_MetaG DOE Joint Genome Institute (JGI) 3300009783 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 42.12 -87.65 1300289832 2409518 903 13 1397 31 SRX2338863 Unrestricted 0.0 Metagenome 3300002979 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - MSL at JPL treated with PMA (megahit assembly) DOE Joint Genome Institute (JGI) 3300002979 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes nnivanova@lbl.gov, NNIvanova@lbl.gov Natasha Ivanova, Natalia Ivanova No Engineered Built environment Unclassified Spacecraft Assembly Cleanrooms Unclassified Clean room 34.1 -118.1 250647 576 88 5 1 0 Unrestricted 0.0 Metagenome 7000000596 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human throat microbial communities from NIH, USA - visit 2, subject 763961826 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000596 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human 39.0042816 -77.1012173 64044597 121963 0 0 0 0 SRX024966 0.0 Metagenome 3300069247 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_002-O-20210804-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069247 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tundra Soil Unclassified Terrestrial soil 68.627943 -149.347229 2203447209 4867161 1059 43 1912 67 0.0 Metagenome 3300025875 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG19_WC_8/21/14_NA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025875 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 1284606664 1847806 589 191 788 284 SRX3348993 Unrestricted 0.0 Metagenome 3300005399 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F14-07SV275 DOE Joint Genome Institute (JGI) 3300005399 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 703541016 1690396 794 23 1262 30 SRX2782419 Unrestricted 0.0 Metagenome 3300031901 *Microbiome Permanent Draft Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 DOE Joint Genome Institute (JGI) 3300031901 Metagenome Analysis spades v. 3.12.0 Yes Yes agaudin@ucdavis.edu Amelie Gaudin No Host-associated Plants Rhizosphere Roots Soil rhizosphere 38.5 -121.7 4219328884 10687709 2275 123 3995 208 SRX5799626 Unrestricted 8.34 Metagenome 3300046691 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere DOE Joint Genome Institute (JGI) 3300046691 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5881 -123.1926 858277172 1458955 416 50 677 89 Unrestricted 17.2 Metagenome 3300031697 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1330 DOE Joint Genome Institute (JGI) 3300031697 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 400324806 724873 311 6 484 16 SRX5329008 Unrestricted 31.39 Metagenome 3300033111 *Microbiome Permanent Draft Microbial communities from various environments in Magnetic Island Reef, Townsville, Australia Sponge tissue microbial communities from Magnetic Island Reef, Townsville, Australia - 36404 AGRF 3300033111 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes b.glasl@aims.gov.au Bettina Glasl No Host-associated Porifera Unclassified Sponge Unclassified Sponge tissue -19.1531 146.8641 495048702 1093066 121 2 224 3 0.0 Metagenome 3300001025 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1097 DOE Joint Genome Institute (JGI) 3300001025 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 329209 1078 19 0 23 0 SRX1987005 Unrestricted 0.0 Metagenome 3300031221 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #280 DOE Joint Genome Institute (JGI) 3300031221 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 506166410 876879 197 41 261 61 SRX5329024 Unrestricted 38.41 Metagenome 3300028803 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120 DOE Joint Genome Institute (JGI) 3300028803 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92039953 -106.94828697 920970621 2394496 430 11 795 20 SRX5354622 Unrestricted 8.52 Metagenome 3300017989 *Microbiome Permanent Draft Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_2 metaG DOE Joint Genome Institute (JGI) 3300017989 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes valentine@geol.ucsb.edu David Valentine No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Sediment Hypersaline lake sediment 33.4166 -115.9166 2154960573 3977349 1308 8 2077 22 SRX3905681 Unrestricted 9.78 Metagenome 3300060394 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210613_17_21 DOE Joint Genome Institute (JGI) 3300060394 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 563670852 778911 240 157 329 210 Unrestricted 32.36 Metagenome 3300042776 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N2_0_30 NMDC pilot DOE Joint Genome Institute (JGI) 3300042776 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380273 -119.2723038 40567169 118201 197 2 348 6 SRX2523201 0.0 Metagenome 3300007980 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159207311 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007980 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 130433264 216617 87 0 141 0 0.0 Metagenome 3300042931 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D118_1 DOE Joint Genome Institute (JGI) 3300042931 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 163471922 246732 95 7 192 14 Unrestricted 89.89 Metagenome 3300070928 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Florida, USA - DSNY_009-M-20180823-COMP-DNA1 3300070928 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 64758380 178557 81 11 154 18 0.0 Metagenome 3300012674 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Florida, USA - TSFL046 MetaG DOE Joint Genome Institute (JGI) 3300012674 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 28.571 -82.2546 125156370 218667 35 51 34 100 SRX3539484 Unrestricted 0.0 Metagenome 3300020466 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001540 (ERX556059-ERR598968) CEA Genoscope 3300020466 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 34.8341 -71.204 1284071315 3104809 655 64 1242 139 0.0 Metagenome 3300034389 *Microbiome Permanent Draft Understanding the reciprocal impacts of modified plant cell wall and associated microbiome Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-Control-R4 DOE Joint Genome Institute (JGI) 3300034389 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kalluriudayc@ornl.gov Udaya C. Kalluri No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 32.1348 -81.9657 516108622 547617 74 279 88 122 SRX7584239 Unrestricted 0.0 Metagenome 3300029608 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36473 Beijing Genomics Institute (BGI) 3300029608 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 184937490 246848 145 0 221 0 0.0 Metagenome 3300029487 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001937-24 Beijing Genomics Institute (BGI) 3300029487 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 198104375 264974 188 0 215 0 0.0 Metagenome 3300043526 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield ecozone, Canada - Lake 06-306 Genome Quebec 3300043526 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.698298 -93.70868 1094218270 2362502 399 135 689 257 0.0 Metagenome 3300025139 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-17 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025139 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 690764681 1203226 672 35 969 46 SRX3198552 Unrestricted 0.0 Metagenome 3300025666 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025666 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 448923147 844062 277 77 410 123 SRX2999669 Unrestricted 0.0 Metagenome 3300040983 *Microbiome Permanent Draft Bacterial communities from sewage treatment works near Birtley, UK Bioelectrochemical system biofilm bacterial communities from sewage treatment works near Birtley, UK - 12 4M Northumbria University 3300040983 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes martin.spurr@newcastle.ac.uk Martin Spurr No Engineered Bioreactor Unclassified Anaerobic Unclassified wastewater 54.903212 -1.595078 37225333 77104 113 0 205 0 0.0 Metagenome 3300029469 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001926-13 Beijing Genomics Institute (BGI) 3300029469 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 114212648 128604 85 0 124 0 0.0 Metagenome 3300028966 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 397_12M Beijing Genomics Institute (BGI) 3300028966 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 61953054 76328 65 0 85 0 ERX491133 0.0 Metagenome 3300017967 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300017967 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 2017622426 4374142 1301 119 2199 204 SRX4074032 Unrestricted 14.75 Metagenome 3300026497 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-B DOE Joint Genome Institute (JGI) 3300026497 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 193077638 504265 231 15 443 30 SRX4802675 Unrestricted 8.9 Metagenome 3300006159 *Microbiome Finished Marine microbial communities from the Red Sea brine-pools Marine microbial communities from the Red Sea brine-pool interfase layer Discovery Deep King Abdullah University of Science and Technology 3300006159 Metagenome Analysis Newbler released per PI No Yes redcancerbero@gmail.com, alm067@ucsd.edu Alvaro M. Plominsky No Environmental Aquatic Unclassified Marine Unclassified Marine 21.28639 38.28722 1998526 5841 0 0 0 0 0.0 Metagenome 3300002413 *Microbiome Permanent Draft Phenol degrading bioreactor microbial communities from Hong Kong Phenol degrading bioreactor microbial communities from Hong Kong - Syntrophorhabdus aromaticivorans Beijing Genomics Institute (BGI) 3300002413 Metagenome Analysis released per JGI data release policy No Yes richieju520@gmail.com Feng Ju No Engineered Bioreactor Unclassified Wastewater Unclassified Phenol degrading bioreactor 3101231 3157 1 0 1 0 0.0 Metagenome 3300017655 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched backyard soil microbial communities from Emeryville, California, USA - eDNA 5th pass 30_C BE-Lig BY (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017655 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes JMGladden@lbl.gov John Gladden No Environmental Terrestrial Unclassified Soil Unclassified soil 37.83 -122.29 774665585 1291076 1015 77 1322 100 SRX4809030, SRX4809031 Unrestricted 0.0 Metagenome 2209111001 *Microbiome Permanent Draft Sinkhole freshwater microbial communities from Lake Huron, US Sinkhole freshwater microbial communities from Lake Huron, US, Illumina + 454 University of Michigan 2209111001 Metagenome Analysis LANL pipeline, velvet and neubler released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Sinkhole Freshwater Microbial mats Sinkhole freshwater 45.19843 -83.32721 39112987 63471 28 0 30 0 0.0 Metagenome 3300000177 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 hypolimnion v1 DOE Joint Genome Institute (JGI) 3300000177 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.0412 -89.6864 72801538 163454 80 11 157 18 Unrestricted 0.0 Metagenome 3300005798 *Microbiome Permanent Draft Sediment microbial communities of hot springs in Rotorua, New Zealand Sediment microbial communities of hot springs in Rotorua, New Zealand - Wai-O-Tapu hot spring, NZ1 Oak Ridge National Laboratory 3300005798 Metagenome Analysis IDBA_UD v. 1.1.0 released per JGI data release policy No Yes bwar@pdx.edu Anna-Louise Reysenbach No Environmental Aquatic Sediment Thermal springs Unclassified thermal hot spring -38.361208 176.369545 4.5 34999785 56327 59 1 55 0 0.0 Metagenome 3300032237 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime Ecozone, Canada - Lake 07-006 Genome Quebec 3300032237 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.110564 -64.150711 579378524 1199916 307 56 514 107 0.0 Metagenome 3300042247 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D307_3 DOE Joint Genome Institute (JGI) 3300042247 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 191170986 279158 154 6 219 12 Unrestricted 71.14 Metagenome 3300014002 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00834 Weill Cornell Medical College 3300014002 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.72 -73.98 20561535 26263 16 0 21 0 SRX822800 0.0 Metagenome 3300050198 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D10_RHK2_2_to_SEK_2 DOE Joint Genome Institute (JGI) 3300050198 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.245 519278983 876002 308 135 521 214 Unrestricted 15.18 Metagenome 3300036803 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in New South Wales, Australia - Pf_8 DOE Joint Genome Institute (JGI) 3300036803 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil -34.5 150.0 1393708866 2381099 459 69 822 107 SRX8392455 Unrestricted 20.13 Metagenome 3300070322 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountains, Colorado, USA - RMNP_041-M-20170807-COMP-DNA1 3300070322 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 1389076 4595 19 0 31 1 0.0 Metagenome 3300043013 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - Beaver4Cecum1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043013 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.18 -122.54 152175824 298944 402 8 575 7 SRX8345947 Unrestricted 93.2 Metagenome 3300019838 *Microbiome Permanent Draft Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil - Pedrinho_C3 Center for Advanced Technologies in Genomics, Sao Paulo University 3300019838 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 43051153 80169 66 0 87 1 0.0 Metagenome 3300017544 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - eDNA 5th pass 30_C Kraft MG (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017544 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes JMGladden@lbl.gov John Gladden No Engineered Solid waste Composting Mixed feedstock Commercial compost compost 37.83 -122.29 457787885 845994 457 6 652 14 SRX4809036, SRX4809035 Unrestricted 0.0 Metagenome 3300070403 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_003-M-20200803-COMP-DNA1 3300070403 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 34037986 100888 93 3 176 9 0.0 Metagenome 3300034523 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from deep shales in Oklahoma, United States - K-4-A DOE Joint Genome Institute (JGI) 3300034523 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back fracking water 35.812 -98.262 81945820 135970 56 5 95 7 SRX8135812 Unrestricted 824.45 Metagenome 3300060378 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210606_10_01 DOE Joint Genome Institute (JGI) 3300060378 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 866425161 1248257 295 225 376 293 Unrestricted 19.2 Metagenome 3300027075 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT160D0 HiSeq DOE Joint Genome Institute (JGI) 3300027075 Metagenome Analysis spades v. 3.11.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9888 -108.3994 122295641 314965 324 24 653 29 SRX5086851, SRX5086852 Unrestricted 0.0 Metagenome 3300003522 *Microbiome Permanent Draft Estuarine microbial communities from Mobile Bay, Alabama Estuarine microbial communities from Mobile Bay, Alabama - Sample Sp Auburn University 3300003522 Metagenome Analysis released per JGI data release policy No Yes rmm0025@auburn.edu, rmm0025@auburn.edu; mariitarichard@gmail.com Richard M. Mariita, Richard M. Mariita; Richard Mariita No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 30.4464641 -87.9922684 95325398 496584 421 11 900 14 0.0 Metagenome 3300045427 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-497 Genome Quebec 3300045427 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 52.000623 -122.173033 785796031 1835013 468 91 681 181 0.0 Metagenome 3300027183 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.571 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027183 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 92876834 214081 147 56 211 85 SRX2753568 Unrestricted 0.0 Metagenome 3300059720 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1560A-3 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059720 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2638 -123.4649 156104001 334341 155 69 243 102 Unrestricted 0.0 Metagenome 3300036046 *Microbiome Permanent Draft Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Balambano_FR1_MetaG (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036046 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rlsimister@gmail.com Rachel Simister No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment -2.651 121.2318 1424419752 2780102 1122 55 1710 102 SRX4020276, SRX5645274 Unrestricted 0.0 Metagenome 3300005774 *Microbiome Permanent Draft Human lung microbial communities from healthy (non-smokers and smokers) and HIV infected subjects Human lung microbial communities from Normal Control Supraglottic 101018-1 New York University Langone Medical Center 3300005774 Metagenome Analysis Shotgun released per JGI data release policy No Yes leopoldo.segal@nyumc.org Leopoldo N Segal No Host-associated Mammals: Human Lung Respiratory system Unclassified Lung Microbiome 40.7127 -74.0059 20629650 61412 2 2 6 2 0.0 Metagenome 3300006032 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_05_20cm DOE Joint Genome Institute (JGI) 3300006032 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2471321927 7105373 2393 40 3970 82 SRX2728001 Unrestricted 0.0 Metagenome 3300035401 *Microbiome Permanent Draft Extreme environments viral communities from various locations Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 490_2616 DOE Joint Genome Institute (JGI) 3300035401 Metagenome Analysis spades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified filtered seawater 13.3498 -44.8801 66801315 200333 8 12 15 11 SRX7709945 Unrestricted 108.41 Metagenome 3300013832 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A3_5cm_0M University of Tennessee 3300013832 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 328948445 921946 123 7 289 23 SRX710565 0.0 Metagenome 3300002772 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS DOE Joint Genome Institute (JGI) 3300002772 Metagenome Analysis Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.9082 -79.0499 80006623 126596 65 0 87 0 SRX1991093 Unrestricted 0.0 Metagenome 3300050353 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvC-P(3) 1-5 DOE Joint Genome Institute (JGI) 3300050353 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.355 19.0438 960590066 1436549 230 21 372 42 Restricted 12.76 Metagenome 3300040627 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_003-M-20170612-COMP-DNA1 Battelle Memorial Institute 3300040627 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 1233204 3941 24 16 55 16 0.0 Metagenome 3300025052 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-37 (SPAdes) DOE Joint Genome Institute (JGI) 3300025052 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 50.0 -145.0 135688304 289716 46 3 37 10 Unrestricted 0.0 Metagenome 3300038497 *Microbiome Permanent Draft Freshwater sediment microbial communities from Alaska Lake sediment microbial communtites from St. Paul Island, Alaska - PH152_515 University of California, Santa Cruz 3300038497 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Sediment Lake sediment 57.18 -170.25 4341615 8721 4 0 11 0 0.0 Metagenome 3300032753 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18013 DOE Joint Genome Institute (JGI) 3300032753 Metagenome Analysis spades v. 3.13.0 Yes Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.0411 -89.6861 637555160 1152853 380 41 502 66 SRX7891224 Unrestricted 18.45 Metagenome 3300036966 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - 2AD 48 II DOE Joint Genome Institute (JGI) 3300036966 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 431991542 775611 475 2 750 2 SRX8363552 Unrestricted 23.59 Metagenome 3300005090 *Microbiome Permanent Draft Artificial metagenome created from 100 bacterial genomes from a wide range of clades in bacterial phylogeny Artificial metagenome created from 100 bacterial genomes from a wide range of clades in bacterial phylogeny Rutgers University 3300005090 Metagenome Analysis Not Available released per JGI data release policy No Yes srinayani.marpaka@gmail.com, czhu@bromberglab.org Srinayani Marpaka, Chengsheng Zhu No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Artificial Metagenome 40.0 -74.0 0 0 0 0 0 0 0.0 Metagenome 3300032061 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-10 DOE Joint Genome Institute (JGI) 3300032061 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh sediment 42.722 -70.847 809094614 1615602 498 5 780 8 SRX6458654 Unrestricted 11.32 Metagenome 3300009528 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from South Pacific Ocean to uncover new lineages of life (NeLLi) - Chile_00310 metaG DOE Joint Genome Institute (JGI) 3300009528 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Oceanic Marine Sediment Deep subsurface -44.283 -75.865 1716190993 3503067 1537 23 2341 38 SRX3203371 Unrestricted 0.0 Metagenome 3300031823 *Microbiome Permanent Draft Hardwood forest soil microbial communities from various locations in the United States Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 DOE Joint Genome Institute (JGI) 3300031823 Metagenome Analysis spades v. 3.12.0 Yes Yes jdraff@indiana.edu Jonathan Raff No Environmental Terrestrial Temperate forest Soil Bulk soil hardwood forest soil 39.0844 -86.4705 3241568763 7217505 1082 115 1799 203 SRX6409954 Unrestricted 8.66 Metagenome 3300002265 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP01-MB 3300002265 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300040291 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_001-M-20160809-COMP-DNA1 Battelle Memorial Institute 3300040291 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 6325797 18406 27 4 60 7 0.0 Metagenome 3300034080 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A5A4.1 DOE Joint Genome Institute (JGI) 3300034080 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 329719079 906184 502 2 873 9 SRX7658905 Unrestricted 6.72 Metagenome 3300004228 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 111_LOW13 DOE Joint Genome Institute (JGI) 3300004228 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 52931655 126146 53 0 74 0 SRX2721182 Unrestricted 0.0 Metagenome 3300025621 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025621 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 27054497, 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 392017218 694876 253 41 295 82 SRX2999538 Unrestricted 0.0 Metagenome 3300028201 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Site 230 with 0.8UM filter - spades J. Craig Venter Institute 3300028201 Metagenome Analysis Spades v. 3.11.1 Released per Simon Roux. Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater -68.4 78.18278 8.31 11925309 23924 7 0 11 0 0.0 Metagenome 3300043561 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield ecozone, Canada - Lake 06-159 Genome Quebec 3300043561 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.564777 -77.04943 879921033 2070021 539 162 923 366 0.0 Metagenome 3300008094 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-11 DOE Joint Genome Institute (JGI) 3300008094 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 978833461 1756599 940 36 1549 53 SRX3198182 Unrestricted 0.0 Metagenome 3300057203 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2021-2011 DOE Joint Genome Institute (JGI) 3300057203 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.785 -83.27722222 545692247 1137057 328 164 567 189 Unrestricted 21.9 Metagenome 3300017782 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 3 SPOT_SRF_2009-08-19 DOE Joint Genome Institute (JGI) 3300017782 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 539164810 1249010 127 58 222 108 SRX7207068, SRX7207067 Unrestricted 0.0 Metagenome 3300032199 *Microbiome Permanent Draft STAs constructed wetland biome Wetland sediment microbial communities from Everglades, Florida, USA - STA44-Sample04_1 University of Florida 3300032199 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy No Yes ng.hanh24@gmail.com Hanh Nguyen No Environmental Aquatic Wetlands Freshwater Sediment sediment 26.38 -80.51 6.6-8.4 68820351 91183 33 0 57 0 0.0 Metagenome 3300047318 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere DOE Joint Genome Institute (JGI) 3300047318 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5883 -123.194 666652207 1160379 317 25 582 41 Unrestricted 19.75 Metagenome 3300060779 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_004-M-20210622-comp-1 DOE Joint Genome Institute (JGI) 3300060779 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 45.822941 -121.998707 1814049538 3169050 481 126 839 180 Unrestricted 18.17 Metagenome 3300039866 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 100_R1_022417 University of Maryland 3300039866 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.74305556 27.09777778 25604168 34810 55 3 81 0 0.0 Metagenome 3300025297 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025297 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu; NNIvanova@lbl.gov Jeff Dangl; Natalia Ivanova No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.9082 -79.0499 523817286 820552 164 1 203 4 SRX2562211 Unrestricted 0.0 Metagenome 3300061126 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIF1SW no PMA treatment Jet Propulsion Laboratory, California Institute of Technology 3300061126 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 72139313 89420 8 5 19 6 SRX2249344, SRX2249338, SRX3808539, SRX3808523 0.0 Metagenome 3300015161 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G1B, Ice margin) University of Bristol 3300015161 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.156516 -50.06387 6.41 192219830 348642 116 0 183 0 0.0 Metagenome 3300047365 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_140723.NP1 DOE Joint Genome Institute (JGI) 3300047365 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 662166551 1320552 483 135 724 208 Unrestricted 11.62 Metagenome 2058419021 *Microbiome Permanent Draft Feline fecal microbial communities from Illinois, USA cat metagenome 11 Research and Testing Laboratory 2058419021 Metagenome Analysis seqman NGEN transcriptome released per JGI data release policy No Yes sdowd@pathogenresearch.org Scot E. Dowd No Host-associated Mammals Large intestine Digestive system Fecal Feline fecal 40.11 -88.4 88918156 261466 193 0 297 0 0.0 Metagenome 3300011238 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00491 Weill Cornell Medical College 3300011238 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.84 -73.88 51974171 83806 29 0 46 0 SRX822460 0.0 Metagenome 3300020112 *Microbiome Permanent Draft Elephant fecal microbial communities from Asian Elephant in Hamburg Zoo, Germany Fecal microbial communities from Asian elephant in Hamburg Zoo, Hamburg, Germany - 2016, sample 2 Goettingen Genomics Laboratory 3300020112 Metagenome Analysis Megahit v1.1.1 released by JGI data releasing policy Yes Yes wolfgang.streit@uni-hamburg.de Wolfgang Streit No Host-associated Mammals Large intestine Digestive system Fecal Gastrointestinal tract (feces) 53.595256 9.941572 2640389866 4816409 1743 40 2760 68 0.0 Metagenome 3300047559 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Shark River Slough, Flamingo, Florida, USA - sharkriverslough_2019_sw_WHONDRS-S19S_0042 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047559 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 25.4098 -80.9642 153033037 283049 99 22 156 24 Unrestricted 0.0 Metagenome 3300034104 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120 DOE Joint Genome Institute (JGI) 3300034104 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1553932070 3211008 681 38 1006 77 SRX7622087 Unrestricted 12.1 Metagenome 3300039223 *Microbiome Permanent Draft Marine microbial communities from Northern Baffin Bay, Arctic Ocean Marine microbial communities from Northern Baffin Bay, Arctic Ocean - surface_st101_2018 CEA Genoscope 3300039223 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy Yes Yes nastasia.freyria.1@ulaval.ca Nastasia Freyria No Environmental Aquatic Oceanic Marine Photic zone marine 76.62 -77.58 5563112759 15569662 3463 2720 4080 3708 0.0 Metagenome 3300007916 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 763759525 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007916 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2928523 3894 3 0 5 0 0.0 Metagenome 3300007347 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764649650 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007347 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 88772761 129853 78 0 106 0 0.0 Metagenome 3300020421 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007) CEA Genoscope 3300020421 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -5.2476 -85.3343 1055645645 2601980 382 15 692 20 0.0 Metagenome 3300001781 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from the Cayman Rise, Cayman Islands Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Deep Sites 3300001781 Metagenome Analysis IDBA_UD k52-k92 step10 Released per Gregory Dick (Dec 3, 2015) No Yes Gregory Dick, Sunit Jain No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 18.35 -81.85 218214362 314848 208 14 380 13 0.0 Metagenome 3300055001 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Activated sludge microbial communities from bioreactor in WWTP, Madison, WI, USA - RS_2020-07-14_SampleA DOE Joint Genome Institute (JGI) 3300055001 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.03331 -89.35633 3355290305 4573503 1181 107 1702 160 Unrestricted 23.42 Metagenome 3300061672 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0505 Microbiome Insights 3300061672 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 234897134 331111 61 9 79 11 0.0 Metagenome 3300010000 *Microbiome Finished Microbiology of confined controlled built environments Private houses (including a private home) floor intact (viable) microbial communities from the Eekholt wildlife park, Eekholt, Germany - private houses, PMA treated samples, F_plus Eurofins MWG Operon 3300010000 Metagenome Analysis Ray Meta released per JGI data release policy No Yes alexander.mahnert@gmail.com Alexander Mahnert No Engineered Built environment Unclassified House Unclassified built environment 53.953343 10.034461 49202991 58770 19 0 3 2 0.0 Metagenome 3300014807 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS62_3 University of Hohenheim 3300014807 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 146046008 241993 79 0 148 0 0.0 Metagenome 3300005948 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_O2min_ad_571m_LV DOE Joint Genome Institute (JGI) 3300005948 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 640726148 1890451 845 41 1408 97 SRX2779448 Unrestricted 0.0 Metagenome 3300056834 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 P1 1-5 (re-filtered) (version 2) DOE Joint Genome Institute (JGI) 3300056834 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533617 19.0471317 740590734 834064 136 15 155 17 Restricted 14.69 Metagenome 3300031548 *Microbiome Permanent Draft Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 DOE Joint Genome Institute (JGI) 3300031548 Metagenome Analysis spades v. 3.12.0 Yes Yes agaudin@ucdavis.edu Amelie Gaudin No Host-associated Plants Rhizosphere Roots Soil rhizosphere 38.5 -121.7 5146499543 13061083 2872 97 4549 194 SRX5356661 Unrestricted 9.54 Metagenome 3300035211 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D1105M20 DOE Joint Genome Institute (JGI) 3300035211 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0386 1262865394 2930856 1162 1 2045 3 SRX8255983 Unrestricted 5.9 Metagenome 3300040458 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 083_R1_022417 University of Maryland 3300040458 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.67936111 27.11419444 3413026 9284 31 0 35 1 0.0 Metagenome 3300042059 *Microbiome Permanent Draft Mollusc gills microbial communities from various hydrothermal vent in Atlantic Ocean Mollusc gills microbial communities from Clueless hydrothermal vent, Atlantic Ocean - BspSym_Cl_2_11-3 Max Planck Institute for Marine Microbiology 3300042059 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills -4.803266 -12.3718 379210255 415231 3 7 4 4 ERX3367184 0.0 Metagenome 3300005068 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Hydrocarbon microbial Community from Halfdan Field, North Sea, Denmark - MHDA13 Shell Corporation 3300005068 Metagenome Analysis megahit Released on PI's request No Yes ebalsop@lbl.gov Eric Alsop No Environmental Aquatic Deep subsurface Marine Hydrocarbon Water 55.49 7.42 312516293 816318 3211 1 3245 12 0.0 Metagenome 3300020543 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 29JUN2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020543 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 118166829 258629 135 40 240 57 SRX1989776 Unrestricted 0.0 Metagenome 3300040737 *Microbiome Draft Marine sediment microbial community from Mar Menor, Spain Marine sediment microbial community from Mar Menor, Spain - S72 v2 FISABIO - Public Health 3300040737 Metagenome Analysis Megahit v. 1.1.1-2 released by JGI data releasing policy No Yes borja.aldeguer@ua.es Borja Aldeguer No Environmental Aquatic Coastal Marine Sediment Marine sediment 37.67303698 -0.78374087 2293821436 4672999 814 20 1557 15 0.0 Metagenome 7000000357 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 638754422 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000357 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 8026293 13071 0 0 0 0 0.0 Metagenome 3300028865 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N1_4 DOE Joint Genome Institute (JGI) 3300028865 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 715512490 1769609 269 14 462 21 SRX5357443 Unrestricted 0.0 Metagenome 3300050160 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D10_SEK2_2_to_RHK2 DOE Joint Genome Institute (JGI) 3300050160 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.153 -124.211 579409315 1064121 248 66 368 78 Unrestricted 12.92 Metagenome 3300045917 *Microbiome Permanent Draft Metagenomes from Anaerobic Digestors at Pulp and Paper Mills Anaerobic lagoon sludge microbial community from a pulp and paper mill in Alberta, Canada - WF171204 pb_HMSP Genome Quebec, University of Toronto 3300045917 Metagenome Analysis Spades v. 3.14.1 released per submitter -- IMGSUPP-3867 Yes Yes elizabeth.edwards@utoronto.ca; camillaln@gmail.com Elizabeth A. Edwards; Camilla Nesb? No Engineered Bioreactor Unclassified Anaerobic Unclassified anaerobic sludge 55.2811 -114.7718 1001067358 2044469 370 11 841 15 0.0 Metagenome 3300054041 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin05_30_metaG re-annotation DOE Joint Genome Institute (JGI) 3300054041 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1092245178 2124212 381 5 661 8 SRX3292370 0.0 Metagenome 3300029613 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36453 Beijing Genomics Institute (BGI) 3300029613 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 219163627 276167 169 2 241 4 0.0 Metagenome 7000000585 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159753524 replicate 2 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000585 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 79567155 150048 0 0 0 0 0.0 Metagenome 3300069350 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik, Tundra, AK, USA - TOOL_006-O-20170721-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069350 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 68.66109 -149.37047 118795353 337880 161 8 308 7 0.0 Metagenome 3300011507 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00763 Weill Cornell Medical College 3300011507 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.72 -73.96 22914221 29618 16 0 20 0 SRX822729 0.0 Metagenome 3300012660 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100576 University of Pennsylvania 3300012660 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 44468785 95729 52 10 100 14 SRX756178 0.0 Metagenome 3300025857 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-212 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025857 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.29055 -156.788643 646717027 1347547 377 8 580 9 SRX1990807 Unrestricted 0.0 Metagenome 3300035144 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0608U48 DOE Joint Genome Institute (JGI) 3300035144 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8973 -97.0409 557527915 1360167 554 2 1129 1 SRX8263234 Unrestricted 6.99 Metagenome 3300027714 *Microbiome Permanent Draft Marine microbial communities from the West Antarctic Peninsula, for metatranscriptomic analysis Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027714 Metagenome Analysis spades v. 3.11.1 Yes Yes mattcott@udel.edu Matthew T. Cottrell No Environmental Aquatic Coastal Marine Unclassified Marine -64.8156 -64.0406 608175177 1255337 164 131 251 208 SRX2848062 Unrestricted 0.0 Metagenome 3300048617 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT_PTT1_OCT19_150cm DOE Joint Genome Institute (JGI) 3300048617 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9883 -108.4003 84539208 250087 134 4 242 11 Restricted 24.56 Metagenome 3300032142 *Microbiome Permanent Draft Mixed culture microbial communities from Louisiana State university, LA, USA - Haloarcula sp. PCN7 and Halobacterium Mixed culture microbial communities from Louisiana State university, LA, USA - Haloarcula sp. PCN7 and Halobacterium Michigan State University 3300032142 Metagenome Analysis A5_pipeline v. 20140604 released by Gary King No Yes gkingme@gmail.com Gary King No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified defined medium 30.4055 -91.1862 7705918 8049 5 0 4 0 0.0 Metagenome 3300028818 *Microbiome Permanent Draft Microbial communities from Yellowstone National Park hot springs 2017 Hot spring sediment microbial communities from Rabbit Creek Outflow 3, Yellowstone National Park, USA - 170626D University of Minnesota 3300028818 Metagenome Analysis SPAdes v. 3.11.0 released by JGI data releasing policy Yes Yes trinityh@umn.edu Trinity Hamilton No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.5204 -110.8126 9.239 182682112 386452 131 0 161 0 0.0 Metagenome 3300070213 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_001-O-20170731-COMP-DNA1 3300070213 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 91153460 278642 168 25 374 50 0.0 Metagenome 3300002136 *Microbiome Permanent Draft Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds M2t6FKB1 (104f) 3300002136 Metagenome Analysis released by JGI data releasing policy No Yes daniel.herlemann@io-warnemuende.de, daniel.herlemann@emu.ee Daniel Herlemann, Daniel P. Herlemann No Environmental Aquatic Unclassified Unclassified Unclassified Marine 57.305 20.0745 175541663 786759 160 17 356 15 0.0 Metagenome 3300043700 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - Rondonia_Pasture_3_A100m DOE Joint Genome Institute (JGI) 3300043700 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.204 -62.774 910171191 2414890 548 7 1068 7 Unrestricted 7.66 Metagenome 3300028122 *Microbiome Permanent Draft Extreme environments viral communities from various locations Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SI3M DOE Joint Genome Institute (JGI) 3300028122 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Coastal Marine Brine sea-ice brine 71.3731 -156.5049 41533276 80652 17 11 37 53 SRX5248024 Unrestricted 262.21 Metagenome 3300011116 *Microbiome Finished Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov Chunlab, Inc 3300011116 Metagenome Analysis SPAdes 3.8.2 released by JGI data releasing policy No Yes chojc@inha.ac.kr Jang-Cheon Cho No Environmental Aquatic Lake Freshwater Unclassified Freshwater 37.947421 127.818872 30660637 43381 1 0 1 0 0.0 Metagenome 3300030082 *Microbiome Permanent Draft Acid mine drainage microbial biofilm communities from Richmond Mine, California, USA Acid mine drainage biofilm communities from Richmond mine site C75, Iron Mt, CA, USA - AMDC750608V2 University of California, Berkeley 3300030082 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 40.67542 -122.53025 17302310 21293 13 0 16 0 0.0 Metagenome 3300037234 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_3000m_C5_15cm20cm DOE Joint Genome Institute (JGI) 3300037234 Metagenome Analysis metaspades v. 3.13.0 Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.799 -121.0256 924549004 1475282 444 2 712 1 SRX8382851 Unrestricted 14.12 Metagenome 3300012964 *Microbiome Permanent Draft Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG DOE Joint Genome Institute (JGI) 3300012964 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes christopher.s.miller@ucdenver.edu Christopher S. Miller Yes 29146959 Environmental Aquatic Wetlands Freshwater Unclassified freshwater wetlands 41.3778 -82.5108 4928865836 10622330 3237 10 5659 12 SRX3527565 Unrestricted 0.0 Metagenome 3300013226 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100564 University of Pennsylvania 3300013226 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 31557256 59842 55 1 106 2 SRX756190 0.0 Metagenome 3300046653 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-C3 10-14 DOE Joint Genome Institute (JGI) 3300046653 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0435 517662596 798238 244 5 387 5 Restricted 12.66 Metagenome 7000000439 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human saliva microbial communities from NIH, USA - visit 1, subject 763496533 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000439 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human 39.0042816 -77.1012173 18585399 41804 0 0 0 0 0.0 Metagenome 3300027430 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A1-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300027430 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 27157210 90753 85 3 139 3 SRX1991104 Unrestricted 0.0 Metagenome 3300014681 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00547 Weill Cornell Medical College 3300014681 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.66 -73.9 36615153 56490 22 0 34 0 SRX822514 0.0 Metagenome 3300001304 *Microbiome Permanent Draft Mangrove swamp biosurfactant microbial communities from Bertioga, Sao Paulo, Brazil Fosmid_A6 3300001304 Metagenome Analysis released by JGI data releasing policy No Yes dfdomingos@uol.com.br Daniela Domingos, Daniela F. Domingos No Environmental Aquatic Oceanic Marine Sediment Mangrove swamp biosurfactant -23.89694 -46.20778 33014 39 0 0 0 0 0.0 Metagenome 3300031879 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031879 Metagenome Analysis spades v. 3.12.0 Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Unclassified Soil 18.321 -65.8172 2684840914 6143372 807 20 1430 28 SRX3604134, SRX5634809 Unrestricted 0.0 Metagenome 3300022575 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 5 Selected contigs with viral hallmark genes Autonomous University of Barcelona 3300022575 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 2863798 4137 0 0 0 0 0.0 Metagenome 3300060662 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Yellowstone NP, Wyoming, USA - YELL_005-M-20210708-comp-1 DOE Joint Genome Institute (JGI) 3300060662 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 44.948383 -110.631377 773391452 1440274 415 34 854 52 Unrestricted 20.48 Metagenome 3300001243 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 05AUG2008 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300001243 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.099444 -89.404444 5446885 12263 13 1 18 3 SRX3307837 Unrestricted 0.0 Metagenome 3300039312 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 203_4M Beijing Genomics Institute (BGI) 3300039312 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 13501593 15628 13 0 29 0 ERX491000 0.0 Metagenome 3300002801 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A1-10 DOE Joint Genome Institute (JGI) 3300002801 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 110059 378 14 0 33 1 SRX1991103 Unrestricted 0.0 Metagenome 3300012044 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ852 (21.06) DOE Joint Genome Institute (JGI) 3300012044 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.0729 163.7189 839293875 1601818 692 38 1057 76 SRX3372536 Unrestricted 0.0 Metagenome 3300009937 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R5 University of New South Wales 3300009937 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au; z5119396@unsw.edu.au Holly Bennett; Viet Hung Nguyen No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 102483563 180543 66 2 105 2 0.0 Metagenome 3300013906 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - sediment SCG89 University of British Columbia 3300013906 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Sediment Marine 373309 1137 0 0 0 0 SRX143198 0.0 Metagenome 3300023239 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #549 DOE Joint Genome Institute (JGI) 3300023239 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 161858999 302411 107 13 189 16 SRX4397122 Unrestricted 18.56 Metagenome 3300006063 *Microbiome Permanent Draft Mining for adhesins from protozoa-associated epibionts Protozoa-associated epibionts from sheep rumen, Palmerston North, New Zealand - adhesins screened Leibniz Institute 3300006063 Metagenome Analysis Unknown released per JGI data release policy No Yes filomena.ng@agresearch.co.nz Filomena Ng No Host-associated Mammals Stomach Digestive system Rumen Rumen -40.355 175.6117 921395 3409 0 1 6 1 0.0 Metagenome 3300000155 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 36 08/11/09 200m DOE Joint Genome Institute (JGI) 3300000155 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.5663346 -123.5193257 61879833 128159 41 1 86 2 Unrestricted 0.0 Metagenome 3300053146 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere DOE Joint Genome Institute (JGI) 3300053146 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.587809 -123.193624 677366443 1365860 364 68 568 126 Unrestricted 12.14 Metagenome 2124908013 *Microbiome Permanent Draft Throat swab microbial communities from Los Alamos National Laboratory, USA Human Throat microbiome from visit number 1 of subject 763496533 Los Alamos National Laboratory 2124908013 Metagenome Analysis released per JGI data release policy No Yes BCM No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human 38.646 -90.224 141653246 255001 17 0 61 0 0.0 Metagenome 3300028411 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF #695 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028411 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5602 78.1968 59595160 100414 17 1 28 2 SRX3296351 Unrestricted 0.0 Metagenome 3300006324 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0500m University of Hawaii 3300006324 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Aphotic zone Marine 22.75 -158.0 284514200 687400 467 63 692 102 0.0 Metagenome 3300028676 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N1_1 DOE Joint Genome Institute (JGI) 3300028676 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 653927412 1573513 822 152 1188 238 SRX5799067 Unrestricted 0.0 Metagenome 3300017677 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - K13-10 University of Michigan 3300017677 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.52346 -83.666 30362890 49579 27 2 39 2 0.0 Metagenome 3300006751 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG DOE Joint Genome Institute (JGI) 3300006751 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -11.499 -81.405 401234928 906751 51 1 74 1 SRX2926778 Unrestricted 0.0 Metagenome 3300013863 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In5 SAF170 SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300013863 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1 -118.1 38468029 56385 19 7 55 22 Unrestricted 0.0 Metagenome 3300033559 *Microbiome Permanent Draft Sinkhole microbial mat communities from Lake Huron, Michigan, USA Sinkhole microbial mat from Lake Huron, Michigan, USA - SG0353 University of Michigan 3300033559 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy Yes Yes sgrim01@gmail.com Sharon Grim No Environmental Aquatic Sinkhole Freshwater Unclassified microbial mat 45.19843 -83.32721 231996661 282522 81 10 95 15 0.0 Metagenome 3300037561 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 1-5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037561 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3535 19.0472 974930946 2011463 378 48 705 67 SRX4415343, SRX8658335 Unrestricted 0.0 Metagenome 3300006943 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW DOE Joint Genome Institute (JGI) 3300006943 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Host-associated Plants Nodule Roots Unclassified Root nodules 34.0722 -118.4441 545256502 1031931 183 2988 209 5776 SRX2752612 Unrestricted 0.0 Metagenome 3300049035 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - C22_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049035 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 107975727 245376 242 13 599 24 Unrestricted 0.0 Metagenome 3300027554 *Microbiome Permanent Draft Genome and metagenome analysis of marine red algae Porphyra Marine algal microbial communities from Maine, USA - Maine_Asex4_metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027554 Metagenome Analysis spades v. 3.11.1 Yes Yes Brawley@maine.edu Susan Brawley No Host-associated Algae Unclassified Red algae Unclassified Marine 44.342 -68.065 467258149 715642 143 8 214 14 SRX2999531 Unrestricted 0.0 Metagenome 3300025731 *Microbiome Permanent Draft Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico and Hudson Canyon, USA Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM8C Gulf of Mexico (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025731 Metagenome Analysis spades v. 3.11.1 Yes Yes mcredmond@uncc.edu Molly C. Redmond No Environmental Aquatic Cold seeps Marine Unclassified Methane seep mesocosm 27.37 -90.57 698776050 1068519 502 1 509 0 Unrestricted 0.0 Metagenome 3300025976 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_ThreeSqB_D1 (SPAdes) DOE Joint Genome Institute (JGI) 3300025976 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.131752 -122.266335 108450502 259464 183 4 350 5 SRX7146201 Unrestricted 0.0 Metagenome 3300018056 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1 DOE Joint Genome Institute (JGI) 3300018056 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 1 855781946 1799272 612 7 1094 13 SRX3939422 Unrestricted 6.12 Metagenome 3300027057 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine sediment microbial community from Union City, CA, USA - Pond 1C Sediment 1 (SPAdes) DOE Joint Genome Institute (JGI) 3300027057 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Intertidal zone Marine Salt pond sediment Enviromental 37.569083 -122.103267 146770160 292651 125 0 226 3 SRX3305178 Unrestricted 0.0 Metagenome 3300039918 *Microbiome Permanent Draft Industrial fuel microbial communities from aircraft samples near Hamburg, Germany Industrial fuel microbial communities from aircraft samples near Hamburg, Germany - 180711_BF_001 re-assembly HPI Heinrich-Pette-Institut 3300039918 Metagenome Analysis metaSpades v. 3.1 released by Ines Krohn-Molt No Yes wolfgang.streit@uni-hamburg.de; ines.krohn@uni-hamburg.de Wolfgang Streit; Ines KROHN No Engineered Industrial production Unclassified Engineered product Unclassified Industrial fuel 53.338 9.5152 93871441 115358 14 7 30 9 0.0 Metagenome 3300015315 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_31MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015315 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 179493090 306657 14 61 7 140 SRX3922902 Unrestricted 7.59 Metagenome 3300026140 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_H2O_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026140 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Pond water 37.4965 -122.133 242091418 462484 105 1 200 3 SRX2523672 Unrestricted 0.0 Metagenome 3300039045 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample35 King Abdulaziz City for Science and Technology (KACST) 3300039045 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 25.46 36.6 62826734 136199 65 0 117 0 SRX1097603 0.0 Metagenome 3300042350 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME13Aug2013-rr0770 DOE Joint Genome Institute (JGI) 3300042350 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 895630672 1495694 328 20 468 39 Unrestricted 14.71 Metagenome 2162886006 *Microbiome Draft Switchgrass rhizosphere microbial communities from Michigan, USA Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v1 DOE Joint Genome Institute (JGI) 2162886006 Metagenome Analysis Newbler and/or Velvet released based on JGI ITS No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.794771 -84.393804 50824218 79305 2 8 2 5 Unrestricted 0.0 Metagenome 3300027645 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027645 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 419381808 921215 287 19 502 47 SRX3312084 Unrestricted 0.0 Metagenome 3300071030 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_046-O-20180718-COMP-DNA1 3300071030 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 152779450 445315 216 33 458 59 0.0 Metagenome 3300010309 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1552A-3 DOE Joint Genome Institute (JGI) 3300010309 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.1869 -123.8842 221470309 471349 410 136 723 224 SRX2523444 Unrestricted 4.87 Metagenome 3300015368 *Microbiome Permanent Draft Danish lakes Microbial communities Depth profiles Lake Almind and Hund Freshwater microbial communities from Lake Hund, Silkeborg, Region Midtjylland, Denmark - HUS_14.08.12_4m metaSPAdes assemblies Odense University Hospital 3300015368 Metagenome Analysis metaSPAdes 3.7.1 released by JGI data releasing policy Yes Yes atreusch@biology.sdu.dk Alexander Treusch No Environmental Aquatic Lake Freshwater Unclassified Freshwater 56.04 9.54 5 95882597 294482 48 15 97 19 0.0 Metagenome 3300039965 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_002-O-20160830-COMP-DNA1 Battelle Memorial Institute 3300039965 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 20287777 59309 89 19 180 29 0.0 Metagenome 3300007868 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 160400887 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007868 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 14934689 27073 19 0 36 1 SRX023030, SRX023031 0.0 Metagenome 3300003337 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Oklahoma, USA - DC3-115 DOE Joint Genome Institute (JGI) 3300003337 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 4010238 8231 12 9 12 7 SRX2770439 Unrestricted 0.0 Metagenome 3300036676 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C1-1A DOE Joint Genome Institute (JGI) 3300036676 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 270529508 765312 395 19 685 41 SRX8816638 Unrestricted 5.82 Metagenome 3300023081 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (version 2) DOE Joint Genome Institute (JGI) 3300023081 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1000501434 1932175 433 55 606 88 SRX4072332 Unrestricted 25.03 Metagenome 3300012547 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100715 University of Pennsylvania 3300012547 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8820782 17864 23 7 37 14 SRX756135 0.0 Metagenome 3300041417 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - Aug2018WEW_P20_D2 (version 2) DOE Joint Genome Institute (JGI) 3300041417 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 1214175115 1870603 290 44 497 50 SRX10167248 Unrestricted 0.0 Metagenome 3300009114 *Microbiome Permanent Draft Microbial communities in swimming pool backwashes Microbial communities from sand-filter backwash in Singapore swimming pools - SK-2 Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300009114 Metagenome Analysis megahit released per JGI data release policy Yes Yes martintayqx@gmail.com Martin Tay No Engineered Built environment Unclassified Unclassified Unclassified Swimming pool sandfilter backwash 1.28967 103.85007 58823888 142581 52 25 66 43 0.0 Metagenome 3300070537 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from North Sterling, Colorado, USA - STER_006-M-20170606-COMP-DNA2 Battelle Memorial Institute 3300070537 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Agricultural land Soil Unclassified Terrestrial soil 40.463935 -103.035332 6.57-7.47 27725923 77534 65 5 117 6 0.0 Metagenome 3300047303 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mackenzie River, Tsiigehtchic, Northwest Territories, Canada - Mackenzie 2004-1 DOE Joint Genome Institute (JGI) 3300047303 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 67.4333 -133.75 133026982 370332 147 4 284 7 Unrestricted 47.45 Metagenome 3300070811 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_004-M-20190312-COMP-DNA1 3300070811 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 8246725 28363 68 0 125 4 0.0 Metagenome 3300007815 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15 DOE Joint Genome Institute (JGI) 3300007815 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jim.fredrickson@pnnl.gov, jim.fredrickson@pnnl.gov; binskeep@montana.edu Jim Fredrickson, Jim Fredrickson; William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.733 -110.709 3 39320922 136240 13 0 23 0 SRX2753798 Unrestricted 0.0 Metagenome 3300060588 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210610_14_21 DOE Joint Genome Institute (JGI) 3300060588 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 369323082 521963 187 106 241 157 Unrestricted 34.66 Metagenome 3300048130 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_150401.NP1 DOE Joint Genome Institute (JGI) 3300048130 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 876433468 1985450 544 72 769 120 Unrestricted 14.29 Metagenome 3300050509 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation DOE Joint Genome Institute (JGI) 3300050509 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Host-associated Plants Rhizosphere Roots Soil Populus rhizosphere 35.8443 -83.9607 2962974786 6740967 1403 40 2494 76 SRX2843500 0.0 Metagenome 3300042132 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_070716_133 DOE Joint Genome Institute (JGI) 3300042132 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.9457 -103.6985 86513964 244313 199 8 358 13 Unrestricted 6.56 Metagenome 3300002923 *Microbiome Permanent Draft Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease - 2012_LB_H17 3300002923 Metagenome Analysis IDBA-UD + SOAPdenovo + GAA made public per user request (Enrique Zozaya - 05/02/16 email) No Yes t.thomas@unsw.edu.au Torsten Thomas Yes 28419766 Host-associated Algae Unclassified Red algae Unclassified Delisea pulchra -33.57 150.15 1023913294 4165834 251 146 645 232 0.0 Metagenome 3300045134 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_7_B DOE Joint Genome Institute (JGI) 3300045134 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 184576585 231617 104 2 131 1 Unrestricted 82.94 Metagenome 3300011462 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00519 Weill Cornell Medical College 3300011462 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.69 -73.99 16649202 23967 3 0 9 0 SRX822488 0.0 Metagenome 3300050391 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BT26-09_D0 (version 3) DOE Joint Genome Institute (JGI) 3300050391 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3555 19.0492 231545996 359691 115 19 154 22 Restricted 0.0 Metagenome 3300049002 *Microbiome Permanent Draft Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA - CNF2ET2 DOE Joint Genome Institute (JGI) 3300049002 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sydneyg@ucr.edu Sydney Glassman No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 33.6953 -117.4713 1826833427 3166086 439 35 732 53 Unrestricted 17.83 Metagenome 3300037526 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR14_NA08 DOE Joint Genome Institute (JGI) 3300037526 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Crustal Fluids crustal fluids 47.761 -127.7612 315563937 688673 414 9 699 22 SRX9096829 Unrestricted 89.43 Metagenome 3300011004 *Microbiome Permanent Draft Mining for adhesins from protozoa-associated epibionts Protozoa-associated epibionts from sheep rumen, Palmerston North, New Zealand - adhesins screened round 2 >1% abundance without vector trim Leibniz Institute 3300011004 Metagenome Analysis Geneious 8.1.5 released by JGI data releasing policy No Yes filomena.ng@agresearch.co.nz Filomena Ng No Host-associated Mammals Stomach Digestive system Rumen Rumen -40.355 175.6117 3351 9 0 0 0 0 0.0 Metagenome 3300001841 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM18, ROCA_DNA027_0.2um_3g 3300001841 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River plume Marine Plankton Marine plankton 7.2875 -53.0005 108653160 236451 42 10 99 12 0.0 Metagenome 3300044838 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_39CD DOE Joint Genome Institute (JGI) 3300044838 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.5132 -106.0526 1148458123 1997760 428 55 738 77 SRX20649967 Unrestricted 16.2 Metagenome 3300001167 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 DOE Joint Genome Institute (JGI) 3300001167 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 33882872 99905 108 26 206 32 SRX3312015 Unrestricted 0.0 Metagenome 3300005342 *Microbiome Permanent Draft Hot spring viral communities from Yellowstone National Park, Wyoming, USA Hot spring viral communities from Yellowstone National Park, Wyoming, USA - Nymph Lake DOE Joint Genome Institute (JGI) 3300005342 Metagenome Analysis Newbler released based on JGI ITS No Yes sgtringe@lbl.gov, francisco.roberto@inl.gov Susannah Tringe, Frank Roberto No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.7523206 -110.7253926 4 878426 1736 0 0 0 0 Unrestricted 0.0 Metagenome 3300005760 *Microbiome Permanent Draft Algae and Fungi communities from freshwater lake in Auvergne, France during and after algae bloom Algae and Fungi communities from freshwater lake in Auvergne, France - sample AST3 at day 1 of algae bloom Institut Pasteur, Lille, France 3300005760 Metagenome Analysis Trinity 2.06 released per JGI data release policy No Yes luenlee@yahoo.com L Monchy, Luen Luen LI No Environmental Aquatic Lake Freshwater Algal bloom Lake 45.495847 2.887922 85730234 88426 116 42 297 56 0.0 Metagenome 3300040253 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_016-M-23-38-20140910-GEN-DNA1 Argonne National Laboratory 3300040253 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 8110571 22886 32 6 58 7 ERX2133953 0.0 Metagenome 3300055515 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.3C.13 SIP fraction DOE Joint Genome Institute (JGI) 3300055515 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 221354342 382713 182 12 272 27 Unrestricted 18.87 Metagenome 7000000612 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 158883629 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000612 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 82081164 149023 0 0 0 0 0.0 Metagenome 3300002203 *Microbiome Permanent Draft Freshwater microbial community from Sao Paulo Zoo Lake, Brazil Freshwater microbial communities from San Paulo Zoo lake, Brazil - MAR 2013 3300002203 Metagenome Analysis SoapDeNovo released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Lake -23.651072 -46.620675 128005592 381729 1 3 41 0 0.0 Metagenome 3300035336 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada -18E_3b_14_7 mgh University of Alberta 3300035336 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified wastewater 56.7292 -111.3885 59277227 77433 33 0 38 0 0.0 Metagenome 3300013534 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100288 University of Pennsylvania 3300013534 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 134108 425 3 0 2 0 SRX756613 0.0 Metagenome 3300027292 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepC_8d DOE Joint Genome Institute (JGI) 3300027292 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 129244977 256703 70 4 117 5 SRX5245296 Unrestricted 20.92 Metagenome 3300024186 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK29 DOE Joint Genome Institute (JGI) 3300024186 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 230147740 581334 288 18 513 20 SRX4547583 Unrestricted 8.26 Metagenome 3300036865 *Microbiome Permanent Draft Soil microbial communities from a coastal freshwater wetland in North Carolina, United States Soil microbial communities from coastal freshwater wetland in North Carolina, United States - 3Pre DOE Joint Genome Institute (JGI) 3300036865 Metagenome Analysis metaspades v. 3.13.0 Yes Yes peraltaa@ecu.edu Ariane Peralta No Environmental Terrestrial Wetlands Soil Unclassified soil 35.8959 -76.1658 660453138 1083005 244 1 413 3 SRX8387627 Unrestricted 13.25 Metagenome 3300070418 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Alabama, USA - LENO_005-M-20180709-COMP-DNA1 3300070418 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 9328293 31024 68 5 132 7 0.0 Metagenome 3300001189 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from University of Liverpool Illum_500pgNex_IDBAUD University of Liverpool 3300001189 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 12332053 23161 39 0 71 0 0.0 Metagenome 3300003459 *Microbiome Permanent Draft Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S14-SC02B 3300003459 Metagenome Analysis released per JGI data releasing policy No Yes julie.champagne@cnrc-nrc.gc.ca Julie Champagne No Environmental Aquatic Neritic zone/Coastal water Marine Sediment Marine sediment 53.6667 -129.1333 57718459 239961 72 1 162 0 0.0 Metagenome 3300023197 *Microbiome Permanent Draft Solar saltern microbial communities from the Namib Desert Halite microbial communities from solar saltern in the Namib Desert, Gobabeb, Namibia - Red halite Hosabes 2017 Genewiz Inc. 3300023197 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Halite -23.5069722 15.07141667 359438736 514675 112 1 164 3 0.0 Metagenome 3300003824 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH22May08 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003824 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 50147694 110950 80 56 144 81 SRX2565942 Unrestricted 0.0 Metagenome 3300013261 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100112 University of Pennsylvania 3300013261 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 15147652 35231 20 0 33 0 SRX756718 0.0 Metagenome 3300041538 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_34 MetaG AgResearch, New Zealand, Mosgeil 3300041538 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 767327438 1686462 390 32 1045 48 0.0 Metagenome 3300070465 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_049-O-20160727-COMP-DNA1 3300070465 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 39040901 109510 102 9 208 15 0.0 Metagenome 3300021476 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2) DOE Joint Genome Institute (JGI) 3300021476 Metagenome Analysis spades v. 3.11.1-check Yes Yes twoyke@lbl.gov Tanja Woyke No Environmental Terrestrial Cave Deep subsurface Wall biofilm Biofilm -19.8881 -43.6761 4.69 910997921 1969152 409 0 675 3 SRX5644394 Unrestricted 10.39 Metagenome 3300043008 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver small intestine microbial communities from Maple Ridge, British Columbia, Canada - Beaver3Small.Intestine1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043008 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Small intestine Digestive system Unclassified small intestine 49.18 -122.54 64409488 111409 8 4 14 6 SRX8345808 Unrestricted 41.88 Metagenome 3300011180 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - 3C3 metaG DOE Joint Genome Institute (JGI) 3300011180 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; wswingley@niu.edu Ramunas Stepanauskas; Wesley Swingley No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 41.6655 -87.5437 13-14 62790052 140713 147 2 259 8 SRX3008002 Unrestricted 0.0 Metagenome 3300013450 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100575 University of Pennsylvania 3300013450 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 7773834 15027 4 4 12 5 SRX756179 0.0 Metagenome 3300051164 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Congo River, Brazzaville, Congo - CONGO_057 DOE Joint Genome Institute (JGI) 3300051164 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater -4.3092 15.2356 159867989 388206 299 64 588 91 Restricted 24.74 Metagenome 3300036818 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in California, United States - CAC_5 DOE Joint Genome Institute (JGI) 3300036818 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil 35.5 -121.0 1895328079 2979269 496 65 741 115 SRX8386451 Unrestricted 12.56 Metagenome 3300029068 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 128_B Beijing Genomics Institute (BGI) 3300029068 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 25314724 26764 16 0 22 0 ERX490940 0.0 Metagenome 3300059429 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.19C.14 SIP fraction DOE Joint Genome Institute (JGI) 3300059429 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 300911901 542425 71 42 131 47 Unrestricted 10.04 Metagenome 3300020385 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965) CEA Genoscope 3300020385 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com William William; Benjamin Tully Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -33.832 -73.0366 903439280 2029061 423 7 647 12 0.0 Metagenome 3300057155 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2019-0025 DOE Joint Genome Institute (JGI) 3300057155 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.762 -83.33 251378546 529446 162 111 354 177 Unrestricted 32.07 Metagenome 3300002177 *Microbiome Permanent Draft Marine microbial communities from oxygen minimum zone in the mesopelagic equatorial Pacific Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_250m DOE Joint Genome Institute (JGI) 3300002177 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes cdupont@jcvi.org Chris Dupont, Chris L. Dupont No Environmental Aquatic Oceanic Marine Unclassified Marine 8.0 -156.0 188646492 432284 214 13 405 14 SRX1990990 Unrestricted 0.0 Metagenome 3300043690 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - Rondonia_Pasture_2_A10cm DOE Joint Genome Institute (JGI) 3300043690 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.17 -62.833 945372345 2411197 572 10 1028 23 Unrestricted 7.66 Metagenome 3300014056 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A20_5cm_0M University of Tennessee 3300014056 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 401587532 1090329 143 2 320 8 SRX710554 0.0 Metagenome 3300030237 *Microbiome Permanent Draft Marine Fish Microbial Metagenomes Leopard shark gut microbial communities from Southern California Bight, Pacific Ocean - XTSA_S University of California, San Diego, Scripps Institute of Oceanography 3300030237 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton No Host-associated Fish Intestine Digestive system Unclassified fish gut 32.85047778 -117.2705806 3462896 6954 0 2 0 0 0.0 Metagenome 3300011888 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01056 Weill Cornell Medical College 3300011888 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.68 -73.95 49748044 79885 23 0 34 0 SRX823018 0.0 Metagenome 3300006876 *Microbiome Permanent Draft Agricultural soil microbial communities from Utah and Georgia to study Nitrogen management Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 DOE Joint Genome Institute (JGI) 3300006876 Metagenome Analysis MEGAHIT v. 0.1.3 Yes Yes jeanette.norton@usu.edu Jeanette Norton No Environmental Terrestrial Agricultural land Soil Unclassified Agricultural soil 41.7655 -111.8143 2145686781 5058436 2098 83 3704 133 SRX2923095 Unrestricted 0.0 Metagenome 3300021050 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_16mM DOE Joint Genome Institute (JGI) 3300021050 Metagenome Analysis spades v. 3.10.1 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 106321042 113532 26 1 37 2 SRX4010646 Unrestricted 57.28 Metagenome 3300001092 *Microbiome Permanent Draft Osedax symbiont microbial communities from Monterey Canyon, California, USA Osedax symbiont type-I 3300001092 Metagenome Analysis CLC genomics released by JGI data releasing policy No Yes sgoffredi@gmail.com Shana Goffredi No Host-associated Annelida Trophosome Intracellular endosymbionts Unclassified Osedax symbiont 36.708 -122.106 4609393 4562 0 0 0 0 0.0 Metagenome 3300029948 *Microbiome Permanent Draft Activated sludge microbial communities from Shatin wastewater treatment plant, Hong Kong Activated sludge microbial communities from Shatin wastewater treatment plant, Hong Kong - ST_Foam_2012.3 University of Hong Kong 3300029948 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified Activated sludge 110954101 256067 127 6 233 14 SRX277352 0.0 Metagenome 3300029015 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 338_12M Beijing Genomics Institute (BGI) 3300029015 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 102113441 125711 69 2 95 0 ERX491087 0.0 Metagenome 3300042983 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 150-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300042983 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9871 -107.0033 478943869 1331603 451 22 884 41 Unrestricted 6.55 Metagenome 3300049779 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C22_A_7_drought DOE Joint Genome Institute (JGI) 3300049779 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 225693351 540368 393 25 750 33 Unrestricted 11.02 Metagenome 3300037668 *Microbiome Permanent Draft Extreme environments viral communities from various locations Sediment viral communities from Lake Vrana, Zadar, Croatia - 4 virus DOE Joint Genome Institute (JGI) 3300037668 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Lake Freshwater Sediment sediment 43.9359 15.5428 5420950 15682 0 0 0 0 SRX9139746 Unrestricted 721.58 Metagenome 3300015293 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_09MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015293 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 142268195 255782 18 69 22 124 SRX3921975 Unrestricted 10.18 Metagenome 3300056650 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.20W.7 SIP fraction DOE Joint Genome Institute (JGI) 3300056650 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 121905822 228202 64 2 115 6 Unrestricted 15.03 Metagenome 3300025843 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Lake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cm (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025843 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; nravin@biengi.ac.ru; brian.hedlund@unlv.edu Ramunas Stepanauskas; Nikolai Ravin; Brian Hedlund No Environmental Aquatic Lake Freshwater Sediment Lake sediment 53.7598 107.9791 7.32 520800021 1252253 733 5 1226 8 SRX2753868 Unrestricted 0.0 Metagenome 3300040776 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Etang de Berre, Marignane, France - D28 Genopole Toulouse Midi-Pyrenees 3300040776 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.4847 5.188 209074648 423924 215 21 355 36 0.0 Metagenome 3300040931 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - FS5_Glycine_2 DOE Joint Genome Institute (JGI) 3300040931 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.5324 -110.7974 168108709 274563 74 0 115 0 SRX9633582 Unrestricted 489.9 Metagenome 3300023062 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S081-202R-4 DOE Joint Genome Institute (JGI) 3300023062 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 218666660 581433 443 40 861 69 SRX4801357 Unrestricted 7.51 Metagenome 3300033495 *Microbiome Permanent Draft Meromitic Lake A Freshwater microbial communities from meromitic lake A, Ellesmere Island, Canada - Sample 2m re-analysis2 Laval University 3300033495 Metagenome Analysis Megahit v. 1.0.5 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 82.99445 -75.443367 817246120 1905265 352 64 536 135 0.0 Metagenome 3300043219 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_3500m_C2_20cm25cm (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043219 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.6077 -122.6196 258920908 428234 162 3 266 4 SRX8382852 Unrestricted 60.85 Metagenome 7000000343 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 764447348 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000343 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 1598880 4273 0 0 0 0 SRX024062 0.0 Metagenome 3300005613 *Microbiome Draft Saline water and sediment microbial community from Etoliko Lagoon, Greece Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment DOE Joint Genome Institute (JGI) 3300005613 Metagenome Analysis SPADES v3.5.0 Released on PI's approval Yes Yes nnivanova@lbl.gov, NNIvanova@lbl.gov Natasha Ivanova, Natalia Ivanova No Environmental Aquatic Saline Non-marine Saline and Alkaline Sediment Saline water and sediment 38.4825 21.315 688318415 1411029 633 2 1133 15 0.0 Metagenome 3300025006 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_1000_plan (SPAdes) DOE Joint Genome Institute (JGI) 3300025006 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 535191349 723529 146 259 148 40 SRX2867530, SRX2867531 Unrestricted 0.0 Metagenome 3300014588 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00385 Weill Cornell Medical College 3300014588 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.68 -73.95 20300703 24126 8 0 11 0 SRX822356 0.0 Metagenome 7000000204 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 2, subject 159591683 replicate 1 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000204 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 13343729 17717 0 0 0 0 SRX024533, SRX024534 0.0 Metagenome 3300020557 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 15JUN2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020557 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 142440639 301590 132 29 237 34 SRX1989772 Unrestricted 0.0 Metagenome 3300011481 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00522 Weill Cornell Medical College 3300011481 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.98 20867997 26482 10 0 11 0 SRX822491 0.0 Metagenome 3300010970 *Microbiome Permanent Draft Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1, april 2016 FASTERIS 3300010970 Metagenome Analysis SPAdes 3.9 released by JGI data releasing policy No Yes julien.crovadore@hesge.ch Julien CROVADORE No Environmental Aquatic Pond Freshwater Unclassified Pond fresh water 46.25 6.28 442662450 1492742 186 37 309 75 0.0 Metagenome 3300013151 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100522 University of Pennsylvania 3300013151 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 20447652 34671 22 0 50 0 SRX756232 0.0 Metagenome 3300011998 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A30_35cm_6M University of Tennessee 3300011998 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 253269003 610097 74 1 150 3 SRX710596 0.0 Metagenome 3300006618 *Microbiome Permanent Draft Soil microbial communities from the Leymus chinensis steppe, China - nitrogen deposition Soil microbial communities from the Leymus chinensis steppe, China - without N addition Chengdu Institute of Biology, Chinese Academy of Sciences 3300006618 Metagenome Analysis velvet released per JGI data release policy No Yes ruijp@cib.ac.cn Junpeng Rui No Environmental Terrestrial Unclassified Soil Unclassified soil 43.63 116.7 193168056 851049 330 27 842 70 0.0 Metagenome 3300019288 *Microbiome Permanent Draft Mouse fecal microbial communities from Athens, Georgia, USA Mouse fecal microbial communities from Athens, Georgia, USA - 8A1A Georgia Genomics Facility 3300019288 Metagenome Analysis megahit released by JGI data releasing policy No Yes ptu@live.unc.edu Pengcheng Tu No Host-associated Mammals Large intestine Digestive system Fecal mouse fecal 33.9519 -83.3576 32889085 43643 62 0 78 0 0.0 Metagenome 3300066281 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_006-O-20160830-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066281 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 9103851 28338 32 14 51 26 0.0 Metagenome 3300007160 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_1000m University of Hawaii 3300007160 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 242661848 536543 430 13 619 24 0.0 Metagenome 3300049633 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_5_D DOE Joint Genome Institute (JGI) 3300049633 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 182439900 235905 103 1 122 2 Restricted 126.17 Metagenome 3300042893 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME09Jun2009-rr0527 DOE Joint Genome Institute (JGI) 3300042893 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 966696971 1473633 253 66 382 69 Unrestricted 25.01 Metagenome 3300049378 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - 12-2 DOE Joint Genome Institute (JGI) 3300049378 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 196622156 534846 261 9 525 8 Unrestricted 7.26 Metagenome 3300025937 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025937 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 3428093328 8318421 1459 100 2796 180 SRX2740368 Unrestricted 0.0 Metagenome 3300027629 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027629 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 330416162 790602 228 34 431 53 SRX3312092 Unrestricted 0.0 Metagenome 7000000620 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 763840445 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000620 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 5490558 8334 0 0 0 0 SRX024980 0.0 Metagenome 3300045551 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Cordillera ecozone, Canada - Lake 13-515 Genome Quebec 3300045551 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 58.935329 -129.954645 1075650404 2456938 392 75 619 145 0.0 Metagenome 3300000979 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY78 J. Craig Venter Institute (JCVI) 3300000979 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 880526102 2888506 132 63 483 106 0.0 Metagenome 3300048838 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Sediment microbial communities from brackish wetlands in San Jose, California, USA - ROC13_1 DOE Joint Genome Institute (JGI) 3300048838 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Intertidal zone Marine Salt marsh sediment Sediment 37.427598 -121.938678 2038258334 2934996 823 62 1255 92 Unrestricted 19.54 Metagenome 3300033624 *Microbiome Permanent Draft Metagenomic SGS 2x251 Cornfield soil microbial communities from Madison, WI, USA - CF12 Illumina 3300033624 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Agricultural land Soil 43.056543 -89.477477 370054264 1416580 226 12 485 15 0.0 Metagenome 3300017636 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - G11-06 University of Michigan 3300017636 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.39651 -85.40936 24265151 32639 15 0 19 0 0.0 Metagenome 3300006957 *Microbiome Permanent Draft Freshwater lake microbial communities from Singapore - a non-axenic P13C2 culture Freshwater lake microbial communities from Singapore - a non-axenic P13C2 culture The Singapore Centre on Environmental Life Sciences Engineering 3300006957 Metagenome Analysis CLC Genomics Workbench 8 released per JGI data release policy No Yes boonfei@ualberta.ca BOONFEI TAN No Environmental Aquatic Lake Freshwater Unclassified freshwater lake 1.376759 103.898487 28770076 30379 10 0 11 0 0.0 Metagenome 3300006665 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T8 (3) BES Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006665 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 42274526 76378 54 0 109 1 0.0 Metagenome 3300013282 *Microbiome Permanent Draft Activated sludge bacterial and viral communities from EBPR bioreactors in Australia Activated sludge bacterial and viral communities from EBPR bioreactors in Queensland, Australia - SBR4-V92809 California Institute of Technology 3300013282 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Activated sludge -27.49999 153.01209 45829823 107723 36 2 49 1 SRX1113223 0.0 Metagenome 3300053095 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere DOE Joint Genome Institute (JGI) 3300053095 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121352 -123.270987 472789337 631564 115 135 170 195 Unrestricted 0.0 Metagenome 3300018470 *Microbiome Permanent Draft Bovine feces microbial communities from beef and dairy calves in Davis, CA, USA Bovine feces microbial communities from dairy calf in Davis, CA, USA - DMJL001H re-assembly QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018470 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes jxnliu@ucdavis.edu Jinxin Liu No Host-associated Mammals Large intestine Digestive system Fecal feces 38.5449 -121.7405 69907523 118415 86 0 152 1 0.0 Metagenome 3300009976 *Microbiome Permanent Draft Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_186 metaG DOE Joint Genome Institute (JGI) 3300009976 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes esinger@lbl.gov; twoyke@lbl.gov Esther Singer; Tanja Woyke No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass associated 30.387 -97.7301 27837925 52991 24 52 40 87 SRX2524158 Unrestricted 0.0 Metagenome 3300069291 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_003-M-20210727-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069291 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 40.051247 -105.565041 2881592769 6449531 1380 50 2610 88 0.0 Metagenome 3300043372 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Kamloops, British Columbia, Canada - thompson_2019_sw_WHONDRS-S195_0003 DOE Joint Genome Institute (JGI) 3300043372 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 50.6887 -120.3664 679337656 1086632 340 36 475 75 Unrestricted 25.5 Metagenome 3300026848 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and P2 (3) (SPAdes) DOE Joint Genome Institute (JGI) 3300026848 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 87022735 120477 57 0 65 1 SRX3311623 Unrestricted 0.0 Metagenome 3300046055 *Microbiome Permanent Draft Halite microbial communities from Atacama Desert, Chile Halite microbial communities from Salar Grande, Atacama Desert, Chile - SG2 Novogene 3300046055 Metagenome Analysis metaWRAP v. 1.3.2 No Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Halite Rock-dwelling (endoliths) Unclassified Halite -20.952 -70.016 142300703 167827 16 4 25 5 0.0 Metagenome 3300040163 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_001-O-20160809-COMP-DNA1 Battelle Memorial Institute 3300040163 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 8737954 25956 40 9 80 19 0.0 Metagenome 2170459021 *Microbiome Permanent Draft Switchgrass, maize and mischanthus litter microbial communities from University of Illinois Energy Farm, Urbana, IL Litter degradation NP4 University of Illinois, Urbana-Champaign 2170459021 Metagenome Analysis released per JGI data release policy No Yes lixz@illinois.edu Xiangzhen Li No Engineered Solid waste Composting Grass Unclassified Switchgrass, maize and mischanthus litter 40.1097 -88.2041 172362284 421171 155 22 297 30 0.0 Metagenome 3300001257 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 17OCT2008 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300001257 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 3451280 9309 15 3 28 2 SRX3310668 Unrestricted 0.0 Metagenome 3300008479 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 763577454 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008479 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 194179397 270790 174 0 260 0 0.0 Metagenome 3300020717 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 15JUN2009 hypolimnion DOE Joint Genome Institute (JGI) 3300020717 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu; rrmalmstrom@lbl.gov Katherine McMahon; Rex Malmstrom Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 111462832 230040 98 10 148 13 Unrestricted 0.0 Metagenome 3300069627 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_002-M-20170612-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069627 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 28763385 88903 77 14 151 33 0.0 Metagenome 3300057009 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M2L_0_1 DOE Joint Genome Institute (JGI) 3300057009 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0084363 -81.5683388 1040309136 1706596 504 8 899 20 Unrestricted 12.59 Metagenome 3300008541 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 604812005 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008541 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 149202110 206338 131 0 182 0 0.0 Metagenome 3300039196 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 17-067 metaSPAdes Genome Quebec 3300039196 Metagenome Analysis SPAdes v. 3.11.1 metaSPAdes mode released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.131057 -68.666779 740841236 1811099 310 134 601 258 0.0 Metagenome 3300022421 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Lake Baghdad, Rottnest Island (WA - Australia) - LBBRO2 JM20 AGRF 3300022421 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.994794 115.523776 52181503 94413 56 3 78 3 0.0 Metagenome 3300030513 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Bulk soil microbial communities from Mexico - San Felipe (SF) metaG (v2) (version 2) DOE Joint Genome Institute (JGI) 3300030513 Metagenome Analysis spades v. 3.12.0 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Environmental Terrestrial Agricultural land Soil Unclassified Soil 21.766 -100.163 381418018 1028866 947 54 1868 89 SRX6855690 Unrestricted 11.35 Metagenome 3300070576 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_002-O-20200804-COMP-DNA1 Battelle Memorial Institute 3300070576 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 46.243102 -89.544805 4.46-4.74 35329533 109681 150 4 269 14 0.0 Metagenome 3300021565 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0048 Downsampled Assembly University of Michigan 3300021565 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lentic Freshwater Unclassified Freshwater, plankton 41.7026 -83.236 11557946 17543 9 6 11 7 0.0 Metagenome 3300047486 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lake Yojoa, Honduras - Yojoa_01_2020_B_meta (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047486 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Lake Freshwater Unclassified Freshwater 14.8084 -87.9952 813360072 1302053 227 109 400 158 Unrestricted 0.0 Metagenome 3300012553 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100353 University of Pennsylvania 3300012553 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12252782 23299 16 2 18 1 SRX756304 0.0 Metagenome 3300027806 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom. Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027806 Metagenome Analysis spades v. 3.11.1 Yes Yes rmmckay@bgsu.edu Robert M. McKay No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.69957 -83.2941 999655657 1850444 505 133 738 181 SRX2832452 Unrestricted 0.0 Metagenome 3300050250 *Microbiome Permanent Draft Freshwater microbial communities from Yellowstone Lake, Wyoming, United States Freshwater microbial communities from Yellowstone Lake, Wyoming, United States - 2017-08-10-16m DOE Joint Genome Institute (JGI) 3300050250 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.412 -110.335 780346703 1174618 222 26 281 35 Restricted 26.72 Metagenome 3300003376 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06.2A5a-11 DOE Joint Genome Institute (JGI) 3300003376 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 237013 813 18 1 23 0 SRX2576243 Unrestricted 0.0 Metagenome 3300019483 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Sao Paulo, Brazil - Zoo compost C43 Center for Advanced Technologies in Genomics, Sao Paulo University 3300019483 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Engineered Solid waste Composting Zoo waste Unclassified compost -23.651072 -46.620675 48030381 120845 102 9 166 10 0.0 Metagenome 3300050461 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - W11W0 DOE Joint Genome Institute (JGI) 3300050461 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 118785774 224397 183 52 337 53 Unrestricted 18.9 Metagenome 3300011392 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC071 MetaG DOE Joint Genome Institute (JGI) 3300011392 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 35.8607 -78.761 91935224 194350 82 32 121 64 SRX3539710 Unrestricted 0.0 Metagenome 3300011974 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S04-05-R University of California, Los Angeles 3300011974 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 172851042 249023 142 0 200 0 SRX858941 0.0 Metagenome 3300025241 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP-121 (SPAdes) DOE Joint Genome Institute (JGI) 3300025241 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es; mbsulli@gmail.com Silvia G. Acinas; Matthew Sullivan Yes 27654921 Environmental Aquatic Oceanic Marine Unclassified Deep ocean 10.0693 -99.2557 153407167 345591 65 2 100 1 SRX4924345 Unrestricted 0.0 Metagenome 3300021518 *Microbiome Permanent Draft Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Balambano_FR1_MetaG DOE Joint Genome Institute (JGI) 3300021518 Metagenome Analysis spades v. 3.11.1-check Yes Yes rlsimister@gmail.com Rachel Simister No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment -2.651 121.2318 603299675 1296459 756 41 1084 71 SRX4020276, SRX5645274 Unrestricted 0.0 Metagenome 3300025114 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025114 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -13.003 -80.809 320589455 709789 57 0 58 0 SRX2926264 Unrestricted 0.0 Metagenome 3300070395 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_035-O-20160802-COMP-DNA3 3300070395 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 62550655 155100 40 12 95 13 0.0 Metagenome 3300014723 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 570_B Beijing Genomics Institute (BGI) 3300014723 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 25751996 25852 11 0 27 0 ERX491221 0.0 Metagenome 3300044958 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI149_2019_jan_10m DOE Joint Genome Institute (JGI) 3300044958 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 308272140 693621 260 53 432 105 Unrestricted 0.0 Metagenome 3300038848 *Microbiome Permanent Draft Activated sludge microbial communities from anaerobic digester at WWTP from various locations in Denmark Activated sludge microbial communities from anaerobic digester at WWTP in Copenhagen, Denmark - SA-RHK-522 Aalborg University 3300038848 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified Activated sludge 55.6406 12.50581 103092161 200406 199 0 328 0 0.0 Metagenome 3300007509 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um, replicate b Georgia Genomics Facility 3300007509 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 489469920 644558 258 1 319 2 0.0 Metagenome 3300027043 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 11 (SPAdes) DOE Joint Genome Institute (JGI) 3300027043 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 130178681 263054 136 0 260 1 SRX4338610 Unrestricted 0.0 Metagenome 3300003595 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_135m_DNA DOE Joint Genome Institute (JGI) 3300003595 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 199922479 405181 156 3 268 8 Unrestricted 0.0 Metagenome 3300044617 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME13Sep2009-rr0959 DOE Joint Genome Institute (JGI) 3300044617 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1209181380 1818476 478 105 660 133 Unrestricted 17.86 Metagenome 3300027963 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027963 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 45.4091 -72.0994 771180665 1469455 295 59 474 91 SRX2996444 Unrestricted 0.0 Metagenome 3300054982 *Microbiome Permanent Draft Soil microbial communities from various environments and locations in the USA Soil microbial communities from grassland in Ellensburg, Washington, USA - 1000S_FTA5_TOP DOE Joint Genome Institute (JGI) 3300054982 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nancy.hess@pnnl.gov Nancy Hess No Environmental Terrestrial Grasslands Soil Unclassified soil 46.9216 -120.6586 2002470339 3438860 865 20 1383 30 Unrestricted 17.06 Metagenome 3300017500 *Microbiome Permanent Draft Bras del Port Mayo 2015 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CR30 May 2015 University of Valencia 3300017500 Metagenome Analysis idba.1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Non-marine hypersaline water 38.1922 -0.5918 40716657 118378 14 0 28 0 0.0 Metagenome 3300046384 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA053-TGU DOE Joint Genome Institute (JGI) 3300046384 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6772 -83.4783 837454512 2047566 375 48 749 74 Unrestricted 9.07 Metagenome 3300001733 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP112 DOE Joint Genome Institute (JGI) 3300001733 Metagenome Analysis Yes Yes mbsulli@gmail.com, mbsulli@gmail.com; sacinas@icm.csic.es Matthew Sullivan, Matthew Sullivan; Silvia G. Acinas Yes 27654921 Environmental Aquatic Oceanic Marine Unclassified Deep ocean 15.9164 -124.5211 90981152 200849 126 0 203 0 SRX4915165 Unrestricted 0.0 Metagenome 3300021437 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 1-17 MG DOE Joint Genome Institute (JGI) 3300021437 Metagenome Analysis spades v. 3.11.1-check Yes Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 155244191 468836 444 42 732 68 SRX4034918 Unrestricted 7.58 Metagenome 3300030753 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - At.Am.e (v2) (version 2) DOE Joint Genome Institute (JGI) 3300030753 Metagenome Analysis spades v. 3.12.0 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.7658 -100.163 66113247 123147 142 23 205 44 SRX6855687 Unrestricted 0.0 Metagenome 3300039320 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 1_B Beijing Genomics Institute (BGI) 3300039320 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 43988232 44615 20 0 26 0 ERX490993 0.0 Metagenome 3300029342 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 025_10_27_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029342 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 264744967 386681 290 0 429 0 0.0 Metagenome 3300029760 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 008_6_30_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029760 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 195073137 230490 132 0 185 0 0.0 Metagenome 3300020054 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413BT metaG (spades assembly) DOE Joint Genome Institute (JGI) 3300020054 Metagenome Analysis spades v. 3.10.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1008615189 1881848 437 22 641 43 SRX3920142 Unrestricted 28.2 Metagenome 3300030061 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_066 - TARA_R100000908 CEA Genoscope 3300030061 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -34.8901 18.0459 250033409 500228 38 0 54 0 0.0 Metagenome 3300034140 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 53SNC DOE Joint Genome Institute (JGI) 3300034140 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological biocrust 34.3778 -117.6098 274876928 622218 473 31 821 36 SRX7621472 Unrestricted 9.06 Metagenome 3300000265 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_10 DOE Joint Genome Institute (JGI) 3300000265 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Photic zone Marine 48.65 -126.666667 161683159 387725 126 4 235 7 Unrestricted 0.0 Metagenome 3300042291 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2004-rr0407 DOE Joint Genome Institute (JGI) 3300042291 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 796086534 1189930 253 44 286 58 Unrestricted 24.86 Metagenome 3300022828 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #227 DOE Joint Genome Institute (JGI) 3300022828 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 65695823 150784 85 0 176 1 SRX4396748 Unrestricted 9.63 Metagenome 3300000218 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P20 2000m DOE Joint Genome Institute (JGI) 3300000218 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 49.566667 -138.666667 42025244 102315 39 6 88 11 Unrestricted 0.0 Metagenome 3300014662 *Microbiome Permanent Draft Deep-sea hydrothermal vent sediment bacterial and viral communities from Southwest Indian Ocean Deep-sea hydrothermal vent sediment bacterial and viral communities from Southwest Indian Ocean - SWIR-S021-V Zhejiang University 3300014662 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Sediment Deep-sea hydrothermal vent sediment -37.88 49.66 2040303 4610 0 1 1 5 0.0 Metagenome 3300000772 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 hypolimnion DOE Joint Genome Institute (JGI) 3300000772 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu, tmcmahon@engr.wisc.edu; rrmalmstrom@lbl.gov Katherine McMahon, Katherine McMahon; Rex Malmstrom Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300042627 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A19 University of California, Davis 3300042627 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 240682629 693380 385 11 666 14 0.0 Metagenome 3300065481 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Abby Road, Pacific Northwest, WA, USA - ABBY_003-M-20170607-COMP-DNA1 re-annotation Battelle Memorial Institute 3300065481 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.76243 -122.33033 22751026 71215 64 6 123 8 0.0 Metagenome 3300027131 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepA_8h DOE Joint Genome Institute (JGI) 3300027131 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 109365700 240789 117 15 187 17 SRX5245102 Unrestricted 18.19 Metagenome 3300035377 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_3a_19_7 mgh University of Alberta 3300035377 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified wastewater 56.7292 -111.3885 39043934 51454 28 0 32 0 0.0 Metagenome 3300001679 *Microbiome Permanent Draft Black smokers hydrothermal plume microbial communities from Tahi Moana, Lau Basin, Pacific Ocean Black smokers hydrothermal plume microbial communities from Tahi Moana, Lau Basin, Pacific Ocean 3300001679 Metagenome Analysis Public release per request from Karthik Anantharaman (April 15, 2014) No Yes akarthik@umich.edu Karthik Anantharaman No Environmental Aquatic Hydrothermal vents Marine Black smokers Black smokers hydrothermal plume -20.682131 -176.183363 213649834 270314 39 3 74 1 0.0 Metagenome 3300038579 *Microbiome Permanent Draft Bacterial communities from sewage treatment works near Birtley, UK Wastewater bacterial communities from sewage treatment works near Birtley, UK - 03 4M Northumbria University 3300038579 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes martin.spurr@newcastle.ac.uk Martin Spurr No Engineered WWTP Unclassified Wastewater Unclassified wastewater 54.903212 -1.595078 22653014 42046 48 1 59 4 0.0 Metagenome 3300037582 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR10_6 DOE Joint Genome Institute (JGI) 3300037582 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Crustal Fluids crustal fluids 47.7534 -127.7638 101425690 274934 122 97 228 158 SRX9096387 Unrestricted 86.27 Metagenome 3300011670 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metalplastic -P01148 Weill Cornell Medical College 3300011670 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface City subway metal/plastic 40.65 -73.89 31612739 48567 19 0 28 0 SRX823103 0.0 Metagenome 3300020052 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011503CT metaG (spades assembly) DOE Joint Genome Institute (JGI) 3300020052 Metagenome Analysis spades v. 3.10.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 811738049 1480683 446 58 664 104 SRX3919122 Unrestricted 37.07 Metagenome 3300001078 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O2 DOE Joint Genome Institute (JGI) 3300001078 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 5533486 17715 128 82 204 146 SRX3311928 Unrestricted 0.0 Metagenome 3300048927 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 DOE Joint Genome Institute (JGI) 3300048927 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Unclassified Roots Unclassified Root 42.40581 -85.40228 1434942029 2108185 487 80 672 110 Unrestricted 27.3 Metagenome 3300012498 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.yng.090410 DOE Joint Genome Institute (JGI) 3300012498 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 125552624 324888 262 24 559 47 SRX3527494 Unrestricted 0.0 Metagenome 3300029203 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011703-95 Beijing Genomics Institute (BGI) 3300029203 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 129996450 175498 116 0 161 0 0.0 Metagenome 3300012981 *Microbiome Permanent Draft Weathered mine tailings microbial communities from Hibbing, Minnesota, USA Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DT8 University of Minnesota - Twin Cities 3300012981 Metagenome Analysis metaSPAdes released by JGI data releasing policy Yes Yes dsjones@umn.edu Daniel Jones No Environmental Terrestrial Mine Geologic Unclassified Weathered mine tailings 47.432362 -92.940835 101332091 146757 38 1 59 0 0.0 Metagenome 3300003886 *Microbiome Permanent Draft Black smoker hydrothermal vent sediment microbial communities from the Guaymas Basin, Mid-Atlantic Ridge, South Atlantic Ocean Black smoker hydrothermal vent sediment microbial communities from the Guaymas Basin, Mid-Atlantic Ridge, South Atlantic Ocean - Sample 1 Beijing Genomics Institute (BGI) 3300003886 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes limeng848@gmail.com Guaymas sediment, MENG LI No Environmental Aquatic Hydrothermal vents Marine Black smokers hydrothermal vents -15.160005 -13.350021 1707488258 3028071 1191 16 1884 41 0.0 Metagenome 3300014664 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00237 Weill Cornell Medical College 3300014664 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.8 -73.96 27700039 37319 25 0 16 0 SRX822216 0.0 Metagenome 3300025828 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025828 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 434294930 919015 183 10 317 29 SRX2859722 Unrestricted 0.0 Metagenome 3300018433 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_16_30cm DOE Joint Genome Institute (JGI) 3300018433 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 3893910110 9305059 2969 93 5156 147 SRX3105585 Unrestricted 0.0 Metagenome 3300000774 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion v2 (version 2) DOE Joint Genome Institute (JGI) 3300000774 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300070603 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone National Park, Wyoming, USA - YELL_009-M-20180712-COMP-DNA1 Battelle Memorial Institute 3300070603 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 44.970313 -110.501884 5.75-6.08 11137925 35816 67 8 120 15 0.0 Metagenome 2067725009 *Microbiome Permanent Draft Permafrost microbial communities from central Alaska, USA Permafrost microbial communities from central Alaska, USA - Permafrost field sample DOE Joint Genome Institute (JGI) 2067725009 Metagenome Analysis released because it is in Genbank already No Yes rmackelprang@lbl.gov Rachel Mackelprang Yes 22056985 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 65.7906 -149.9102 9656814 13277 15 0 28 0 0.0 Metagenome 3300044766 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 381-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044766 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9904 -107.0598 655768121 1541952 450 3 808 2 Unrestricted 7.69 Metagenome 3300030401 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from colorectal cancer patient in Toronto, Canada - MG100150 University of Michigan 3300030401 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 43.65 -79.38 13837209 27599 45 0 73 0 0.0 Metagenome 3300060433 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210605_09_13 DOE Joint Genome Institute (JGI) 3300060433 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 672446319 995180 301 191 384 261 Unrestricted 24.48 Metagenome 2029527003 *Microbiome Draft Apterostigma dentigerum fungus garden microbial communities from Gamboa, Panama Apterostigma dentigerum fungus garden microbial communities from Gamboa, Panama DOE Joint Genome Institute (JGI) 2029527003 Metagenome Analysis Newbler released based on JGI ITS No Yes gsuen@wisc.edu, currie@bact.wisc.edu Garret Suen, Cameron Currie Yes 25406380 Environmental Terrestrial Insects nest Nest Fungus garden/Fungus gallery Apterostigma dentigerum fungus garden 9.1167 -79.7 97571324 220873 19 0 58 0 Unrestricted 0.0 Metagenome 3300016319 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H DOE Joint Genome Institute (JGI) 3300016319 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Unclassified Soil 18.321 -65.8172 3126499760 6784886 1049 23 1950 50 SRX5296031, SRX3604135 Unrestricted 0.0 Metagenome 3300065633 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 815 in Dunmore, Alberta, Canada - S00JY_0386 Microbiome Insights 3300065633 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.5656823 -110.2741187 29876060 45883 31 2 87 4 0.0 Metagenome 3300040427 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 080_R1_022417 University of Maryland 3300040427 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.5163 18.98259 4510760 9101 12 1 19 4 0.0 Metagenome 3300037584 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037584 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.198 -77.499 335408301 783086 2 0 6 0 SRX3196700, SRX3196701 Unrestricted 0.0 Metagenome 3300069551 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Ozarks Complex, AL, USA - LENO_061-M-20160830-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069551 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.85388 -88.16122 24362204 75151 79 4 144 7 0.0 Metagenome 3300038697 *Microbiome Permanent Draft Marine methane seep sediment microbial communities from Santa Monica Basin, California, USA Marine methane seep sediment microbial communities from Santa Monica Basin, California, USA - 7142 University of Queensland 3300038697 Metagenome Analysis CLC Genomics Workbench v. 7.5 released by Hang Yu No Yes hyu@caltech.edu; vorphan@gps.caltech.edu Hang Yu; Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment marine methanseep sediment 33.78905 -118.66833 21617233 31807 17 0 37 0 0.0 Metagenome 3300006310 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m University of Hawaii 3300006310 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Aphotic zone Marine 22.75 -158.0 1249190898 1881596 1136 30 1393 49 0.0 Metagenome 3300010933 *Microbiome Permanent Draft Marine sediment microbial communities from North Pond, Atlantic Mid-Ocean Ridge. Marine sediment microbial communities from North Pond, Atlantic Mid-Ocean Ridge - NP_1383E Marine Biological Laboratory 3300010933 Metagenome Analysis SPAdes released by JGI data releasing policy No Yes rui.zhao@uib.no Rui Zhao No Environmental Aquatic Unclassified Sediment Unclassified marine sediment 22.8 -46.05 120321168 298597 90 14 172 29 0.0 Metagenome 3300056759 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Activated sludge microbial communities from bioreactor in WWTP, Madison, WI, USA - RS_2021-01-27_SampleA (version 2) DOE Joint Genome Institute (JGI) 3300056759 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.03331 -89.35633 1325716347 1360394 424 32 442 33 Unrestricted 11.36 Metagenome 3300047093 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 soil DOE Joint Genome Institute (JGI) 3300047093 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.588185 -123.192616 6.62 479762459 875780 271 11 475 25 Unrestricted 17.29 Metagenome 3300049670 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought DOE Joint Genome Institute (JGI) 3300049670 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 224048834 497904 409 31 774 39 Unrestricted 12.37 Metagenome 7000000328 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 2, subject 764224817 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000328 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 6548528 11217 0 0 0 0 SRX024153, SRX098552 0.0 Metagenome 3300025421 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul07 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025421 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 151451710 341413 108 51 180 93 SRX2565422 Unrestricted 0.0 Metagenome 3300026266 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV257 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026266 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 376751656 810642 372 25 539 38 SRX2782418 Unrestricted 0.0 Metagenome 3300050001 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume viral communities from North Pacific Ocean - CTD-AT42-06-003-550m-0.03-B v DOE Joint Genome Institute (JGI) 3300050001 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 8.39977 -104.9807 54698227 156449 30 2 52 10 Restricted 87.78 Metagenome 3300011394 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Georgia, USA - TSGA054 MetaG DOE Joint Genome Institute (JGI) 3300011394 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 32.5455 -82.1221 120607516 217152 18 160 19 307 SRX3539530 Unrestricted 0.0 Metagenome 7000000235 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 763496533 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000235 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 221376 606 0 0 0 0 SRX024073 0.0 Metagenome 3300011972 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S04-06-R University of California, Los Angeles 3300011972 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 151635846 236886 115 0 180 0 SRX858946 0.0 Metagenome 3300043153 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - HLP_050217 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043153 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.896 -89.3636 18421175 51974 94 8 173 6 SRX9381728 Unrestricted 19.56 Metagenome 3300012891 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2 DOE Joint Genome Institute (JGI) 3300012891 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 489091657 1245880 631 50 1264 86 SRX3298489 Unrestricted 3.85 Metagenome 3300003996 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2 DOE Joint Genome Institute (JGI) 3300003996 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov, sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe, Susannah Tringe; Jinglie Zhou No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.05241603 -121.76907401 787167723 2380754 867 9 1895 23 SRX7142762 Unrestricted 0.0 Metagenome 3300022241 *Microbiome Permanent Draft Anaerobic microbial community of wastewater bioreactor in Changsha, Hunan, China Activated sludge microbial communities from anaerobic bioreactor in Hunan University, Changsha, China - 6 Beijing Novogene Bioinformatics Technology Co., Ltd 3300022241 Metagenome Analysis IDBA v.1.1.1 released by JGI data releasing policy No Yes yuezheng@uw.edu Yue Zheng No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 28.2127 113.0106 457918439 867882 483 1 781 2 0.0 Metagenome 3300023435 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #143 DOE Joint Genome Institute (JGI) 3300023435 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 204889614 464313 173 0 290 1 SRX4396709 Unrestricted 11.77 Metagenome 3300020297 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B000000437 (ERX555970-ERR598979) CEA Genoscope 3300020297 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -35.2087 26.2932 215659008 548061 304 15 465 33 ERX555970, ERX556091 0.0 Metagenome 3300026823 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 19 (SPAdes) DOE Joint Genome Institute (JGI) 3300026823 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 45216496 109139 59 0 120 2 SRX4339511 Unrestricted 0.0 Metagenome 3300014040 *Microbiome Permanent Draft Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 352 Chalmers University of Technology 3300014040 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 219181731 429728 192 1 360 1 SRX193543 0.0 Metagenome 3300052661 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Photosynthetic mat viral communities from Octopus Spring, YNP, Wyoming, United States - OS20090729 t7a DOE Joint Genome Institute (JGI) 3300052661 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified hot spring phototrophic mat 44.53408 -110.7979 17121816 27477 10 0 10 0 Unrestricted 1085.19 Metagenome 7000000729 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 2, subject 765094712 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000729 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 3355549 5662 0 0 0 0 SRX098543, SRX024091 0.0 Metagenome 3300027720 *Microbiome Permanent Draft Freshwater and sediment microbial communities from a dead zone in Lake Erie, USA Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027720 Metagenome Analysis spades v. 3.11.1 Yes Yes rmmckay@bgsu.edu Robert M. McKay No Environmental Aquatic Lentic Freshwater Epilimnion Freshwater and sediment 41.77 -81.73 734019733 1305766 262 134 392 203 SRX3311440 Unrestricted 0.0 Metagenome 3300037742 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_051817_5_v DOE Joint Genome Institute (JGI) 3300037742 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2787124947 4473255 872 36 1366 54 SRX9162020 Unrestricted 14.35 Metagenome 3300025112 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025112 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 18.92 -108.7999 394352326 878326 22 0 22 0 SRX3330650 Unrestricted 0.0 Metagenome 3300037360 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 30-34 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037360 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0469 656412052 1285023 311 17 482 23 SRX4415320, SRX8127809 Unrestricted 0.0 Metagenome 3300021966 *Microbiome Permanent Draft Metagenomes from anaerobic digester of solid waste Food waste microbial community from Durham, Ontario, Canada - FW2 spades University of Toronto 3300021966 Metagenome Analysis SPAdes-3.10.1 Yes Yes elizabeth.edwards@utoronto.ca; camillaln@gmail.com Elizabeth A. Edwards; Camilla Nesb? No Engineered Solid waste Unclassified Food waste Unclassified food waste 43.6629 -79.3957 1665707358 4114528 383 52 715 144 SRX4986160, SRX4965141 0.0 Metagenome 3300070975 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lajas Experimental Station, Puerto Rico, USA - LAJA_015-M-20160912-COMP-DNA1 3300070975 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 122779 456 11 2 22 4 0.0 Metagenome 3300056358 *Microbiome Permanent Draft Freshwater microbial communities from high-altitude lakes in Yosemite National Park, California, USA Freshwater microbial communities from Upper Cathedral Lake, in Yosemite National Park, California, USA - Y16_177_UC1_t0 DOE Joint Genome Institute (JGI) 3300056358 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmbeman@gmail.com J Michael Beman No Environmental Aquatic Lake Freshwater Unclassified Freshwater 37.8395 -119.4154 13547731 45006 15 5 24 1 Unrestricted 163.37 Metagenome 3300007736 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 604812005 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007736 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 145420982 226377 119 2 172 0 0.0 Metagenome 3300007971 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human saliva microbial communities from NIH, USA - visit 2, subject 763496533 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007971 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human 39.0042816 -77.1012173 76340755 156222 77 0 137 0 0.0 Metagenome 3300056646 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.20W.10 SIP fraction DOE Joint Genome Institute (JGI) 3300056646 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 126713385 217971 51 5 69 6 Unrestricted 11.75 Metagenome 3300024503 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepC_8h DOE Joint Genome Institute (JGI) 3300024503 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 180436669 402003 211 11 340 19 SRX4547328 Unrestricted 12.33 Metagenome 3300004049 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLC_D2 DOE Joint Genome Institute (JGI) 3300004049 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.224518 -122.019257 561565482 1833633 739 13 1612 14 SRX7143103 Unrestricted 0.0 Metagenome 3300014960 *Microbiome Permanent Draft Surface and well water microbial communities from Bara Haldia, Bangladesh Surface water microbial communities from Bangladesh - BaraHaldiaSW0709 University of Tennessee 3300014960 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Groundwater Freshwater Unclassified Surface water 104237163 296484 66 11 143 25 0.0 Metagenome 3300046382 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA039-TCB DOE Joint Genome Institute (JGI) 3300046382 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6875 -83.5012 339813503 968642 442 55 813 92 Unrestricted 6.77 Metagenome 3300044085 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 342-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044085 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.953 -107.0662 320165827 972524 461 20 856 34 Unrestricted 7.1 Metagenome 3300043398 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Virginia, United States - poseycreek_2019_sw_WHONDRS-S19S_0013 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043398 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.8944 -78.1474 125745028 246878 259 38 446 58 Unrestricted 36.89 Metagenome 3300021046 *Microbiome Permanent Draft Soil microbial communities from CZOs across the US Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth University of Colorado 3300021046 Metagenome Analysis Megahit v. 1.0.6 released by Tess Brewer Yes Yes tebr8990@colorado.edu Tess Brewer No Environmental Terrestrial Unclassified Soil Unclassified soil 40.6949 -77.9199 661119885 1486852 102 6 141 23 0.0 Metagenome 3300049481 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Michigan, USA - augustacreek_2019_sed_WHONDRS-S19S_0067 DOE Joint Genome Institute (JGI) 3300049481 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 42.3921 -85.35412 223673066 583651 794 5 1413 11 Unrestricted 10.66 Metagenome 3300049998 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - MR_101317 DOE Joint Genome Institute (JGI) 3300049998 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Unclassified Soil Grasslands soil 41.878 -89.3434 435079785 1134413 419 17 818 23 Unrestricted 0.0 Metagenome 3300009575 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day122 DOE Joint Genome Institute (JGI) 3300009575 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 39.849 -81.036 10635542 23908 58 0 126 0 SRX2996524 Unrestricted 0.0 Metagenome 3300037191 *Microbiome Finished Marine microbial communities from Northern Baffin Bay, Arctic Ocean Marine microbial communities from Northern baffin Bay, Arctic Ocean - surface_st101_2017 CEA Genoscope 3300037191 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy Yes Yes nastasia.freyria.1@ulaval.ca Nastasia Freyria No Environmental Aquatic Oceanic Marine Photic zone marine 76.23 -77.24 2485657972 6972972 2463 889 1982 1193 0.0 Metagenome 3300010390 *Microbiome Permanent Draft Giant kelp blades associated microbial communities from the kelp forest near Monterey Bay Aquarium, California, USA Giant kelp blades associated microbial communities from the kelp forest near Monterey Bay Aquarium, California, USA - sample A Leibniz Institute 3300010390 Metagenome Analysis IDBA_UD v.1.1.1 released per submitter's request Yes Yes aka14@dsmz.de; john.vollmers@kit.edu Anne Kaster; John Vollmers No Host-associated Algae Unclassified Brown Algae Unclassified marine brown algae (kelp) associated 36.619 -121.9 222905290 268400 221 1 228 2 0.0 Metagenome 3300011633 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00555 Weill Cornell Medical College 3300011633 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.67 -73.97 24980302 43713 16 0 18 0 SRX822522 0.0 Metagenome 3300022937 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG (version 2) DOE Joint Genome Institute (JGI) 3300022937 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1019368334 1958162 401 35 568 46 SRX4072137 Unrestricted 27.52 Metagenome 3300011378 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00902 Weill Cornell Medical College 3300011378 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.91 12335433 18591 13 0 23 0 SRX822865 0.0 Metagenome 3300042551 *Microbiome Draft Microbial community shotgun study from Camalti Saltern, Izmir, Turkey Brine water microbial communities from a salt crystallizer pond in Camalti Saltern, Izmir, Turkey - 3CA spades_assembly Macrogen Inc 3300042551 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy No Yes albayrakece@gmail.com ece albayrak No Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Unclassified brine water 38.49 26.92 816832129 1722523 204 5 399 13 0.0 Metagenome 3300000501 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Hydrocarbon contaminated oil fields microbial communities from Alberta, Canada - Microbes in water sample from Medicine Hat oil field -PW_MHGC_2012April10 McGill University 3300000501 Metagenome Analysis No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 50.033333 -110.666667 7.2 16836501 28729 22 0 32 0 0.0 Metagenome 3300033622 *Microbiome Permanent Draft Metagenomic SGS 2x251 Staggered mock microbial community from ATCC, Manassa, VA, USA - ATCC9 Illumina 3300033622 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Laboratory 38.752303 -77.519989 26669184 32740 17 0 25 0 0.0 Metagenome 3300027028 *Microbiome Permanent Draft Genome and metagenome analysis of marine red algae Porphyra Marine algal microbial communities from Porto, Portugal - Porto_5 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027028 Metagenome Analysis spades v. 3.11.1 Yes Yes Brawley@maine.edu Susan Brawley No Host-associated Algae Unclassified Red algae Unclassified Marine 41.162 -8.622 202154571 286515 123 1 119 0 SRX2954900 Unrestricted 0.0 Metagenome 3300009396 *Microbiome Permanent Draft Estuarine microbial communities from Mobile Bay, Alabama Estuarine microbial communities from Mobile Bay, Alabama - Sample Sp re-assembly with CLC Auburn University 3300009396 Metagenome Analysis CLC 9 De novo released per JGI data release policy No Yes mariitarichard@gmail.com, rmm0025@auburn.edu; mariitarichard@gmail.com Richard Mariita, Richard M. Mariita; Richard Mariita No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 30.4464641 -87.9922684 84574962 360371 334 2 542 6 0.0 Metagenome 3300043374 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-423 Genome Quebec 3300043374 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 53.183739 -106.844945 1256485176 2703415 399 158 623 279 0.0 Metagenome 3300034156 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_01D_18 DOE Joint Genome Institute (JGI) 3300034156 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9141 -147.8348 621663364 1480283 487 23 839 57 SRX7633906 Unrestricted 7.86 Metagenome 3300013819 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway plastic -P01217 Weill Cornell Medical College 3300013819 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Plastic surface city subway plastic 40.86 -73.89 11787861 24223 12 0 17 0 SRX823172 0.0 Metagenome 3300038823 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog11 BILS 3300038823 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 2242721 5883 8 0 16 0 ERX1594833 0.0 Metagenome 3300006019 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_NADW_ad_2500m_LV_A DOE Joint Genome Institute (JGI) 3300006019 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 660430286 1790255 719 45 1258 81 SRX2776491 Unrestricted 0.0 Metagenome 3300013284 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Aquatic prokaryotic and eukaryotic communities from a canal in New York, USA: aquatic canal water -GCSS-09 Weill Cornell Medical College 3300013284 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Unclassified Canal Unclassified Aquatic canal 40.67 -73.99 79242335 237234 200 7 411 18 SRX823483 0.0 Metagenome 3300014748 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 572_B Beijing Genomics Institute (BGI) 3300014748 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 46262308 56159 23 1 29 0 ERX491225 0.0 Metagenome 3300046491 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere DOE Joint Genome Institute (JGI) 3300046491 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5878 -123.1934 799023169 1334089 333 50 590 73 Unrestricted 22.6 Metagenome 3300033176 *Microbiome Permanent Draft Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_27_06-R1 DOE Joint Genome Institute (JGI) 3300033176 Metagenome Analysis spades v. 3.13.0 Yes Yes ziels@mail.ubc.ca Ryan Ziels Yes 35477253 Engineered Bioreactor Unclassified Anaerobic Unclassified sludge 51.9691 5.6654 517395148 817156 463 1 618 0 SRX7542597 Unrestricted 40.03 Metagenome 3300044721 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 314-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044721 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9096 -107.0285 463389531 1378478 580 31 1095 57 Unrestricted 7.09 Metagenome 3300003810 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius ilvae ELBA.2 DOE Joint Genome Institute (JGI) 3300003810 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 225277162 574928 9 2 15 1 SRX2711686 Unrestricted 0.0 Metagenome 3300070287 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Florida, USA - DSNY_016-M-20140910-COMP-DNA1 3300070287 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 22687689 63365 57 27 112 33 0.0 Metagenome 3300037087 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-1-X2 DOE Joint Genome Institute (JGI) 3300037087 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0468 705227296 1194825 342 1 533 0 SRX8137860 Unrestricted 10.91 Metagenome 3300001770 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR11_CSW11_NovA DOE Joint Genome Institute (JGI) 3300001770 Metagenome Analysis Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 11289781 18572 6 0 9 0 SRX3320909 Unrestricted 0.0 Metagenome 3300005177 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_12_20cm DOE Joint Genome Institute (JGI) 3300005177 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2476725902 6719405 2308 50 3992 83 SRX2521091 Unrestricted 0.0 Metagenome 3300020139 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sediment microbial communities from Great Boiling Springs, Gerlach, Nevada, United States - GBS 70_MetaG DOE Joint Genome Institute (JGI) 3300020139 Metagenome Analysis spades v. 3.10.1 Yes Yes rstepanauskas@bigelow.org; brian.hedlund@unlv.edu Ramunas Stepanauskas; Brian Hedlund Yes 31333598 Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 40.6614 -119.3661 297862735 472175 226 1 309 3 SRX3998622 Unrestricted 60.39 Metagenome 3300042711 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from Clueless hydrothermal vent, Atlantic Ocean - BspSym_Cl_3_11-4 Re-assembly Max Planck Institute for Marine Microbiology 3300042711 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills -4.803266 -12.3718 216445704 196103 4 7 7 6 ERX3367183 0.0 Metagenome 3300012474 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Unplanted soil (control) microbial communities from North Carolina - M.Soil.3.yng.040610 DOE Joint Genome Institute (JGI) 3300012474 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Environmental Terrestrial Unclassified Soil Unclassified unplanted soil 35.9076 -79.0506 63727873 173063 155 4 332 10 SRX3527531 Unrestricted 0.0 Metagenome 3300021201 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Stylissa sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina ""control"", st9ic 200bp-microeukaryotes" University of New South Wales 3300021201 Metagenome Analysis IDBA-UD released by JGI data releasing policy Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Stylissa sp. (marine sponge) -9.828217 150.820517 175125 371 0 0 0 0 0.0 Metagenome 3300011779 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - seawater enrichment SCG70 University of British Columbia 3300011779 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 450369 1405 0 0 0 0 SRX143179 0.0 Metagenome 3300012293 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100643 University of Pennsylvania 3300012293 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3598388 9843 11 0 15 0 SRX756451 0.0 Metagenome 3300001094 *Microbiome Permanent Draft Abyssal marine microbial communities from the Mediterranean Sea Abyssal marine microbial communities from the Mediterranean Sea - tyro Fidelity Systems Inc 3300001094 Metagenome Analysis released per JGI data release policy No Yes francesco.smedile@iamc.cnr.it, francesco.smedile14@gmail.com francesco smedile, Francesco Smedile No Environmental Aquatic Oceanic Marine Abyssal plane Abyssal marine 34.6698 22.1455 0 0 0 0 0 0 0.0 Metagenome 3300022843 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #5 DOE Joint Genome Institute (JGI) 3300022843 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 100883143 214630 27 0 52 0 SRX4396193 Unrestricted 33.34 Metagenome 3300029408 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 001_6_2_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029408 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 166154776 212120 129 1 191 3 0.0 Metagenome 3300026221 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-062 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026221 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Permafrost soil 68.6137 -149.3144 212003305 472772 264 1 463 3 SRX2761075 Unrestricted 0.0 Metagenome 3300050246 *Microbiome Permanent Draft Freshwater microbial communities from Yellowstone Lake, Wyoming, United States Freshwater microbial communities from Yellowstone Lake, Wyoming, United States - 2017-07-24-12m DOE Joint Genome Institute (JGI) 3300050246 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.412 -110.335 760691066 1180855 238 28 316 59 Restricted 25.16 Metagenome 3300025466 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Aug07 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025466 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 229779079 445344 90 40 147 58 SRX2518390 Unrestricted 0.0 Metagenome 3300009120 *Microbiome Permanent Draft Freshwater sediment microbial communities Lake sediment microbial communities from Tanners Lake, St. Paul, MN University of Minnesota - Twin Cities 3300009120 Metagenome Analysis IDBA released per JGI data release policy No Yes mill3731@umn.edu Hanna Temme No Environmental Aquatic Lake Freshwater Sediment lake sediment 44.953471 -92.97875 373626631 770564 943 21 1416 48 0.0 Metagenome 3300029669 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 001_6_4_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029669 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 119190996 154650 122 1 147 0 0.0 Metagenome 3300023064 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S001-104B-6 DOE Joint Genome Institute (JGI) 3300023064 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 219628489 599658 510 27 956 44 SRX4801448 Unrestricted 7.68 Metagenome 2084038017 *Microbiome Permanent Draft Soil microbial community from Hopland, California, USA, that is PCE polluted Soil microbial communities from Hopland, California, USA, that is PCE polluted - amended with soybean oil GATC-Biotech AG, Konstanz, Germany 2084038017 Metagenome Analysis released per JGI data release policy No Yes timothy.vogel@ec-lyon.fr Timothy M. Vogel, Timothy Vogel No Environmental Terrestrial Unclassified Soil Contaminated Soil 38.9727 -123.1145 6498500 18269 14 0 28 0 0.0 Metagenome 3300029136 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012245-136 Beijing Genomics Institute (BGI) 3300029136 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 201838063 254532 161 1 252 1 0.0 Metagenome 3300033051 *Microbiome Permanent Draft Characterization of microbial community from North Pond CORK fluids Seawater microbial communities from North Pond, Mid Atlantic Ridge, Atlantic Ocean - CTD 4397m Marine Biological Laboratory 3300033051 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Aquatic Oceanic Marine Abyssal plane Marine 22.81 -46.060333 169238830 293016 142 6 199 13 0.0 Metagenome 3300026697 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A4-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026697 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 14171299 47293 69 2 104 3 SRX1991287 Unrestricted 0.0 Metagenome 3300070269 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dakota Coteau Field Site, North Dakota, USA - DCFS_009-M-20190729-COMP-DNA1 3300070269 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 7437724 23946 49 0 80 1 0.0 Metagenome 7000000202 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 159005010 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000202 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 49634368 62178 0 0 0 0 0.0 Metagenome 3300037069 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil viral communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 19_4.5_V_1 DOE Joint Genome Institute (JGI) 3300037069 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1866 -2.2146 337615671 867350 43 7 80 11 SRX8234405 Unrestricted 38.13 Metagenome 3300026901 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300026901 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 33010601 110045 66 0 105 0 SRX1990513 Unrestricted 0.0 Metagenome 3300002613 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A1a-12 DOE Joint Genome Institute (JGI) 3300002613 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 147024 487 24 1 41 2 SRX1991158 Unrestricted 0.0 Metagenome 3300017455 *Microbiome Permanent Draft Bras del Port Dic 2016 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - VFCR30 Dic 2016 University of Valencia 3300017455 Metagenome Analysis idba.1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Non-marine hypersaline water 38.1922 -0.5918 503988 1422 4 0 0 0 0.0 Metagenome 3300004275 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls C (FF_Mn_C) (version 3) (version 3) DOE Joint Genome Institute (JGI) 3300004275 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Lotic Freshwater Unclassified Freshwater 44.376 -110.69 122112554 333840 168 2 271 5 SRX2577196, SRX2577195 Unrestricted 0.0 Metagenome 3300034071 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110 DOE Joint Genome Institute (JGI) 3300034071 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1381893423 2793745 787 75 1146 127 SRX7622085 Unrestricted 12.51 Metagenome 3300014349 *Microbiome Permanent Draft Wastewater microbial communities from lab-scale CANDO bioreactor activated sludge, Evanston, Illinois, US Wastewater microbial communities from lab-scale CANDO bioreactor activated sludge, Evanston, Illinois, US - Oct_15_2015 Beijing Genomics Institute (BGI) 3300014349 Metagenome Analysis CLC Bio 6.0.2 released by JGI data releasing policy Yes Yes hangao2017@u.northwestern.edu Han Gao No Engineered Bioreactor Unclassified Aerobic Unclassified synthetic wastewater 42.057879 -87.67651 646367308 925287 106 5 176 7 0.0 Metagenome 3300051097 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Leeds, Wisconsin, USA - 37_757_WI_DR_0cm_c1_T1_18O DOE Joint Genome Institute (JGI) 3300051097 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 43.30485 -89.3309 1272875485 2156598 439 3 706 6 Restricted 13.34 Metagenome 3300031523 *Microbiome Permanent Draft Extreme environments viral communities from various locations Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SI3L DOE Joint Genome Institute (JGI) 3300031523 Metagenome Analysis spades v. 3.12.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Coastal Marine Unclassified sea-ice brine 71.3731 -156.5049 1416260236 3403881 782 788 1026 1259 SRX5650300 Unrestricted 31.31 Metagenome 3300011464 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00962 Weill Cornell Medical College 3300011464 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.88 20158249 24092 6 0 13 0 SRX822924 0.0 Metagenome 3300045132 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_7_D DOE Joint Genome Institute (JGI) 3300045132 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 199226470 232854 112 1 131 1 Unrestricted 85.7 Metagenome 3300053150 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere DOE Joint Genome Institute (JGI) 3300053150 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121117 -123.269633 525767759 1035726 118 67 162 104 Unrestricted 13.28 Metagenome 3300038707 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-10-3_at_0-1_cm Genome Quebec 3300038707 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.88147 -73.76618 694118231 1803352 953 65 1852 126 0.0 Metagenome 3300005923 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIRDL14 DOE Joint Genome Institute (JGI) 3300005923 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli, Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5563 78.1877 10334105 23971 18 0 39 0 SRX2747265 Unrestricted 0.0 Metagenome 3300042134 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 DOE Joint Genome Institute (JGI) 3300042134 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.9457 -103.6985 315770473 836028 423 32 737 50 Unrestricted 7.53 Metagenome 3300011002 *Microbiome Permanent Draft Rumen microbial communities from healthy moose, Palmer, Alaska Rumen microbial communities from healthy moose, Palmer, Alaska - Plant fraction Ohio State University 3300011002 Metagenome Analysis IDBA-UD released by Lindsey Solden No Yes solden.2@osu.edu Lindsey Solden Yes 30356154 Host-associated Mammals Stomach Digestive system Rumen Moose rumen 61.5997 -148.1128 369493853 534348 462 14 580 19 0.0 Metagenome 3300005344 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG DOE Joint Genome Institute (JGI) 3300005344 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 4577015435 12604305 3674 238 6270 494 SRX2740159 Unrestricted 0.0 Metagenome 7000000614 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764143897 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000614 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 28651469 58001 0 0 0 0 0.0 Metagenome 3300013532 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100718 University of Pennsylvania 3300013532 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 125986 380 6 0 3 1 SRX756132 0.0 Metagenome 3300043609 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 130-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043609 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9372 -107.0134 648849620 1529911 424 50 787 72 Unrestricted 7.87 Metagenome 3300049004 *Microbiome Permanent Draft Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA - CNF8NT1 DOE Joint Genome Institute (JGI) 3300049004 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sydneyg@ucr.edu Sydney Glassman No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 33.6681 -117.456 1656248834 2770746 547 114 907 171 Unrestricted 15.17 Metagenome 3300002760 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - ETNP_6_1000 DOE Joint Genome Institute (JGI) 3300002760 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 18.92 -104.89 261677385 718325 9 0 7 1 Unrestricted 0.0 Metagenome 3300008623 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 763820215 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008623 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 4715037 7247 7 0 6 0 0.0 Metagenome 3300020528 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 26OCT2009 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020528 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 99697576 225446 122 12 169 18 SRX1988280 Unrestricted 0.0 Metagenome 3300005203 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies JGI facility at Oak Ridge National Laboratory 3300005203 Metagenome Analysis IMG default released per JGI data release policy No Yes grace.pold@gmail.com, grace.pold@slu.se Grace Pold No Environmental Terrestrial Loam Soil Forest soil Soil 42.550409 -72.180244 5702340704 35121295 10396 1154 19758 2215 0.0 Metagenome 3300014325 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG DOE Joint Genome Institute (JGI) 3300014325 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil switchgrass rhizosphere 42.3948 -85.3738 4907400608 10499329 2900 289 4928 549 SRX4808765 Unrestricted 5.92 Metagenome 3300070793 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountains, Colorado, USA - RMNP_041-M-20200701-COMP-DNA1 3300070793 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 14574476 46667 99 15 155 24 0.0 Metagenome 3300003822 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE12Jun07 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003822 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 2142869 6231 16 9 27 11 SRX2565202 Unrestricted 0.0 Metagenome 3300027473 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK08-D (SPAdes) DOE Joint Genome Institute (JGI) 3300027473 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 21528187 72917 81 4 159 13 SRX2575483 Unrestricted 0.0 Metagenome 3300062116 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Great Basin, Onaqui, Utah, USA - ONAQ_010-M-20210526-comp-1 DOE Joint Genome Institute (JGI) 3300062116 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Shrubland Soil Unclassified Terrestrial soil 40.201043 -112.497129 1556926120 2735264 563 17 1086 21 SRX22161271 Unrestricted 19.03 Metagenome 3300027294 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1548B-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027294 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2319 -123.8812 212099816 423939 139 8 220 7 SRX2753718 Unrestricted 0.0 Metagenome 3300037205 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 711 S-1-S DOE Joint Genome Institute (JGI) 3300037205 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0475 859665564 1853701 404 61 727 95 SRX8146315 Unrestricted 7.09 Metagenome 3300043468 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2012-rr0314 DOE Joint Genome Institute (JGI) 3300043468 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 922116229 1366460 360 114 461 170 Unrestricted 20.2 Metagenome 3300007001 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 764042746 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007001 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 3035539 4197 3 0 6 0 0.0 Metagenome 3300043415 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Black Earth Creek, Cross Plains, Wisconsin, USA - blackearthcreek_2019_sw_WHONDRS-S19S_0061 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043415 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 43.1091 -89.6403 262095916 461399 242 68 365 117 Unrestricted 19.28 Metagenome 3300055347 *Microbiome Permanent Draft Co-cultures of unialgal cyanobacteria with co-existing heterotrophic bacteria from Dresden University of Technology, Germany Co-culture of unialgal cyanobacterium with co-existing heterotrophic bacterium from Dresden University of Technology, Germany - Nostoc_1.3/Streptobacillus DOE Joint Genome Institute (JGI) 3300055347 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes paul.dagostino@tu-dresden.de Paul M. D'Agostino No Host-associated Microbial Unclassified Bacteria Unclassified Lab culture 51.028586 13.73135 23282393 23545 7 0 8 0 Restricted 10.21 Metagenome 3300049180 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - H15_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049180 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 195564082 436378 318 9 595 18 Unrestricted 0.0 Metagenome 3300001335 *Microbiome Permanent Draft Wetlands benthic microbial communities from British Columbia, Canada Wetlands benthic microbial communities from British Columbia, Canada - ML8 3300001335 Metagenome Analysis IDBA released by JGI data releasing policy No Yes tlh42@psu.edu Trinity No Environmental Aquatic Wetlands Marine Unclassified Wetlands benthic 49.283333 -119.583333 502535982 833619 291 4 451 11 0.0 Metagenome 3300059739 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1555C-3 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059739 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2024 -123.9409 93874902 207173 172 25 280 39 SRX2753736 Unrestricted 0.0 Metagenome 3300037490 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_2 DOE Joint Genome Institute (JGI) 3300037490 Metagenome Analysis metaspades v. 3.13.0 Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 2446273799 3892362 362 15 626 28 SRX9140447 Unrestricted 14.15 Metagenome 3300044683 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R DOE Joint Genome Institute (JGI) 3300044683 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 14.75 -16.85 913423180 1579024 487 60 774 65 Unrestricted 21.11 Metagenome 3300001908 *Microbiome Permanent Draft Contaminated subsurface sediment microbial communities from Dusseldorf, Germany, analyzing toluene degradation Contaminated subsurface sediment microbial communities from Dusseldorf, Germany, analyzing toluene degradation - Fos_Dus_6 3300001908 Metagenome Analysis de novo assembly algorithm of CLC Genomics Workbench released by JGI data releasing policy No Yes emnabouhajja@gmail.com Emna Bouhajja No Environmental Terrestrial Sediment Geologic Unclassified Contaminated subsurface sediment 51.21 6.46 35430 40 0 0 0 0 0.0 Metagenome 3300030355 *Microbiome Permanent Draft Broiler chicken associated microbial communities from animal house in Bologna, Italy Broiler chicken cecum microbial communities from animal house in Bologna, Italy - XT23; Group C Food safety laboratory 3300030355 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Birds Large intestine Digestive system Ceca Broiler chicken cecum 44.3027 11.21504 14746694 26944 32 0 76 0 ERX1378681 0.0 Metagenome 3300012315 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100607 University of Pennsylvania 3300012315 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 11785795 30485 16 0 31 0 SRX756487 0.0 Metagenome 3300003165 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from above oceans and continental USA - SDPR-004 DOE Joint Genome Institute (JGI) 3300003165 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 482803 1488 8 7 11 6 Unrestricted 0.0 Metagenome 3300069346 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_004-M-20131217-COMP-DNA1 re-annotation Argonne National Laboratory 3300069346 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 1974995 6852 45 8 104 9 ERX2133979 0.0 Metagenome 3300035508 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver stomach microbial communities from Maple Ridge, British Columbia, Canada - Beaver4Stomach1 DOE Joint Genome Institute (JGI) 3300035508 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Stomach Digestive system Unclassified stomach 49.18 -122.54 1986291851 2695416 24 20 45 49 SRX8345910 Unrestricted 6.52 Metagenome 3300061660 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0288 Microbiome Insights 3300061660 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 403533016 554941 96 1 116 4 0.0 Metagenome 3300014238 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 218_L4_2014-6-20 San Diego State University 3300014238 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 847213 3315 6 6 20 10 0.0 Metagenome 3300009421 *Microbiome Permanent Draft Genome and metagenome analysis of marine red algae Porphyra Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex2 metaG DOE Joint Genome Institute (JGI) 3300009421 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes brawley@maine.edu, Brawley@maine.edu Susan Brawley No Host-associated Algae Unclassified Red algae Unclassified Marine 50.677 -3.24 552079437 928602 1745 10 3409 16 SRX2954901 Unrestricted 0.0 Metagenome 3300001228 *Microbiome Permanent Draft Switchgrass rhizosphere microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere microbial communities from Knoxville, Tennessee, USA - 12_joined University of Tennessee 3300001228 Metagenome Analysis released per JGI data release policy No Yes jwang43@utk.edu Jun Wang No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 35.9606 -83.9208 19207606 64058 20 1 50 7 0.0 Metagenome 3300016651 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Site 232 with 0.8UM filter J. Craig Venter Institute 3300016651 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater -68.4 78.18278 8.85 26634204 61291 32 12 53 13 0.0 Metagenome 3300007777 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS918_NRZ_DNA CLC_assembly Marine Biological Laboratory 3300007777 Metagenome Analysis CLC genomics workbench, v. 7.0 released per JGI data release policy No Yes jhuber@mbl.edu, jhuber@whoi.edu Huber, Julie Huber No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse vent fluid, hydrothermal vents 46.0747 -129.995 425714829 775163 202 34 371 55 0.0 Metagenome 3300003118 *Microbiome Permanent Draft Human gut microbial communities from lean and obese individuals in Granada, Spain Human gut microbiome from lean and obese individuals in Granada, Spain - Obese sample Institute of Catalysis, The Higher Council for Scientific Research (CSIC) 3300003118 Metagenome Analysis Newbler v.2.5.3 Made public because these are downloaded from Genbank No Yes mferrer@icp.csic.es Manuel Ferrer Yes 22891823 Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 37.17 -3.59 10731170 20859 24 0 43 0 0.0 Metagenome 3300012368 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100779 University of Pennsylvania 3300012368 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 769851 2075 3 1 5 2 SRX756074 0.0 Metagenome 3300004781 *Microbiome Permanent Draft Wetland sediment microbial communities from St. Louis River estuary, Michigan under dissolved organic matter induced mercury methylation Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare2Fresh DOE Joint Genome Institute (JGI) 3300004781 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes diana.nemergut@duke.edu, diana.nemergut@duke.edu.deleted Diana Nemergut No Environmental Aquatic Wetlands Freshwater Sediment Wetland sediment 46.6972164 -92.3279105 847854160 2733870 993 90 2378 167 SRX3194911 Unrestricted 0.0 Metagenome 3300008340 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Sea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC10B Shell Corporation 3300008340 Metagenome Analysis idba_ud Released on PI's request No Yes ebalsop@lbl.gov, nicolas.tsesmetzis@shell.com Eric Alsop, Nicolas Tsesmetzis No Environmental Aquatic Cold seeps Marine Sediment sediment 27.4 -93.2 310096569 1029736 355 0 637 5 0.0 Metagenome 3300056805 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.4C.10 SIP fraction DOE Joint Genome Institute (JGI) 3300056805 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 106315026 212952 115 4 205 5 Unrestricted 24.76 Metagenome 3300006208 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - GF2 control_feces - microbial_metagenome University of Texas Southwestern Medical Center 3300006208 Metagenome Analysis SPAdes 3.1.0 Yes Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 1130544 3836 1 0 0 3 0.0 Metagenome 3300008275 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764447348 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008275 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 162144041 221547 110 0 144 0 0.0 Metagenome 3300009112 *Microbiome Permanent Draft Microbial communities in swimming pool backwashes Microbial communities from sand-filter backwash in Singapore swimming pools - KB-2 Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300009112 Metagenome Analysis megahit released per JGI data release policy Yes Yes martintayqx@gmail.com Martin Tay No Engineered Built environment Unclassified Unclassified Unclassified Swimming pool sandfilter backwash 1.28967 103.85007 747602254 1402616 492 224 794 365 0.0 Metagenome 3300043147 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8WT15 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043147 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 38996352 113413 96 9 172 13 SRX8379806 Unrestricted 19.5 Metagenome 3300006928 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG DOE Joint Genome Institute (JGI) 3300006928 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -11.499 -81.401 427714517 972362 28 0 49 0 SRX2926780 Unrestricted 0.0 Metagenome 3300040593 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_016-M-20130627-COMP-DNA1 Argonne National Laboratory 3300040593 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 1813104 5650 34 1 53 1 0.0 Metagenome 3300044927 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_6_E DOE Joint Genome Institute (JGI) 3300044927 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 183645566 220843 102 1 155 1 Unrestricted 83.67 Metagenome 3300001423 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 415-2 deep-092012 DOE Joint Genome Institute (JGI) 3300001423 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 62919518 172267 99 0 168 0 SRX1987672 Unrestricted 0.0 Metagenome 3300028124 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 25D DOE Joint Genome Institute (JGI) 3300028124 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 190132600 543384 231 19 388 39 SRX5171615 Unrestricted 17.16 Metagenome 3300007246 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 159814214 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007246 Metagenome Analysis SPADES 3.7.0 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 2053356 5760 9 0 10 0 SRX023562, SRX023561 0.0 Metagenome 3300030084 *Microbiome Permanent Draft Human feces microbial communities from Tubingen, Germany Human feces microbial communities from Tubingen, Germany - B3 University of Tuebingen 3300030084 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 48.52 9.05 43607357 52669 49 0 68 0 0.0 Metagenome 3300037232 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 711 S-1-D DOE Joint Genome Institute (JGI) 3300037232 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0475 529532138 906761 174 16 274 29 SRX8146357 Unrestricted 16.92 Metagenome 3300060664 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Konza Prairie Bio Station, Kansas, USA - KONZ_042-M-20210720-comp-1 DOE Joint Genome Institute (JGI) 3300060664 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Grasslands Soil Unclassified Terrestrial soil 39.09957 -96.564404 1309762281 2245540 374 7 617 7 Unrestricted 14.92 Metagenome 3300039314 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 589_M Beijing Genomics Institute (BGI) 3300039314 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 114645644 157131 100 1 191 2 ERX491246 0.0 Metagenome 3300012042 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ489 (22.06) DOE Joint Genome Institute (JGI) 3300012042 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.0853 163.8049 514386820 1108965 356 4 591 5 SRX3372245 Unrestricted 0.0 Metagenome 3300025575 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Incubations 11-33A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025575 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.290884 -156.788063 351888576 574567 260 2 358 0 SRX1990924 Unrestricted 0.0 Metagenome 3300048766 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 E1 1-5 DOE Joint Genome Institute (JGI) 3300048766 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.0467 293012959 509999 227 12 379 23 Restricted 15.58 Metagenome 3300005801 *Microbiome Permanent Draft Sediment microbial communities of hot springs in Rotorua, New Zealand Sediment microbial communities of hot springs in Rotorua, New Zealand - Tikitere hot spring, NZ13 with enrichment Oak Ridge National Laboratory 3300005801 Metagenome Analysis IDBA_UD v. 1.1.0 released per JGI data release policy No Yes bwar@pdx.edu Anna-Louise Reysenbach No Engineered Lab enrichment Unclassified Defined media Unclassified thermal hot springs -38.0631325 176.360798 264735176 547857 215 0 283 2 0.0 Metagenome 3300031788 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2 DOE Joint Genome Institute (JGI) 3300031788 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 4049382184 7364278 1235 138 1845 198 SRX6409950 Unrestricted 15.03 Metagenome 3300001302 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from the Mid Cayman Rise Von Damm vent site (2) Mid Cayman Rise 3300001302 Metagenome Analysis Velvet, MetaVelvet, Minimus released by JGI data releasing policy No Yes menli@umich.edu Meng Li No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 18.3763 -81.7891 3204748 3256 1 0 1 0 0.0 Metagenome 3300045105 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_7_B DOE Joint Genome Institute (JGI) 3300045105 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 190509487 225858 103 1 140 1 Unrestricted 73.78 Metagenome 3300006322 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159551223 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006322 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 163919222 232744 135 0 146 0 0.0 Metagenome 3300034221 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 33SMC DOE Joint Genome Institute (JGI) 3300034221 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological biocrust 34.7856 -115.66 447477781 1060226 654 35 1150 42 SRX7620447 Unrestricted 8.98 Metagenome 3300030100 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_122 - TARA_R100000687 CEA Genoscope 3300030100 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -8.9729 -139.2393 331292318 718512 75 1 124 0 0.0 Metagenome 3300004025 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D1 DOE Joint Genome Institute (JGI) 3300004025 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.045666 -121.866516 665907448 2182964 751 5 1565 15 SRX7142149 Unrestricted 0.0 Metagenome 3300025396 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH10Oct08 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025396 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 140433643 293993 87 33 99 57 SRX2565424 Unrestricted 0.0 Metagenome 3300026071 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_TuleA_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026071 Metagenome Analysis spades v. 3.11.1 released Yes Yes jzz0026@lbl.gov; sgtringe@lbl.gov Jinglie Zhou; Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.049923 -121.765244 92157953 210509 163 2 269 0 SRX7182421 Unrestricted 0.0 Metagenome 3300064933 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 740 in Bashaw, Alberta, Canada - S00JY_0237 Microbiome Insights 3300064933 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.40477497 -112.5728765 67455833 98792 55 0 106 0 0.0 Metagenome 7000000745 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764083206 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000745 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 126878705 249891 0 0 0 0 0.0 Metagenome 3300007590 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1562A-02 DOE Joint Genome Institute (JGI) 3300007590 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2105 -123.7516 480423018 945529 413 8 643 20 SRX2753758 Unrestricted 0.0 Metagenome 3300022731 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Soil microbial communities from Bohemian Forest, Czech Republic - CSU4 DOE Joint Genome Institute (JGI) 3300022731 Metagenome Analysis spades v. 3.11.1-check Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Environmental Terrestrial Temperate forest Soil Unclassified soil 49.0427 13.6161 60155248 159058 80 10 137 21 SRX4456285 Unrestricted 7.97 Metagenome 3300051671 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Schonbrunner Wald, Bavaria, Germany - BW_TH_030D DOE Joint Genome Institute (JGI) 3300051671 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.9061 13.557145 821140850 1911248 408 28 740 47 Unrestricted 9.14 Metagenome 3300027552 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S AM (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027552 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 225404466 632724 493 48 872 76 SRX2574411 Unrestricted 0.0 Metagenome 3300034901 *Microbiome Permanent Draft Understanding the reciprocal impacts of modified plant cell wall and associated microbiome Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R2 DOE Joint Genome Institute (JGI) 3300034901 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kalluriudayc@ornl.gov Udaya C. Kalluri No Host-associated Plants Stem Phyllosphere Wood/Secondary xylem xylem 32.1348 -81.9657 504731799 544728 113 285 130 137 SRX7584741, SRX7584740 Unrestricted 0.0 Metagenome 3300026707 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized -NN626 (SPAdes) DOE Joint Genome Institute (JGI) 3300026707 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 8763736 27918 55 4 88 6 SRX1987008 Unrestricted 0.0 Metagenome 3300002948 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-2-D DOE Joint Genome Institute (JGI) 3300002948 Metagenome Analysis Yes Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 70944855 132384 155 23 253 46 SRX2568350 Unrestricted 0.0 Metagenome 3300002015 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot19C 3300002015 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 9185592 52470 163 4 294 4 0.0 Metagenome 3300005408 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV72 DOE Joint Genome Institute (JGI) 3300005408 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 486042363 1226428 484 4 1056 8 SRX2782317 Unrestricted 0.0 Metagenome 3300005687 *Microbiome Permanent Draft Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia Enhanced biological phosphorus removal bioreactor viral communities from the University of Queensland, Australia - SBR4-V92704 Phage Sequencing University of Queensland 3300005687 Metagenome Analysis CLC 6.0 Released per Connor Skennerton (Sep 15, 2015) No Yes c.skennerton@gmail.com Connor Skennerton No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor lab-scale EBPR bioreactor -27.49999 153.012098 11804141 30357 4 0 5 0 0.0 Metagenome 3300056832 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - APS4_17C_TP2_16O DOE Joint Genome Institute (JGI) 3300056832 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 2008190310 2663127 469 124 587 188 Unrestricted 24.14 Metagenome 3300032211 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1 DOE Joint Genome Institute (JGI) 3300032211 Metagenome Analysis spades v. 3.13.0 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Bulk soil soil 39.6475 -79.9369 1841805081 4756397 1317 12 2412 47 SRX5809522 Unrestricted 7.14 Metagenome 3300029177 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 150_12M Beijing Genomics Institute (BGI) 3300029177 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 54053604 63910 42 0 60 0 ERX490957 0.0 Metagenome 3300050484 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - E15NW16 DOE Joint Genome Institute (JGI) 3300050484 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 174227482 314495 216 55 362 77 Unrestricted 15.06 Metagenome 3300042346 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME28Oct2016-rr0776 DOE Joint Genome Institute (JGI) 3300042346 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 676079695 1080314 319 91 453 118 Unrestricted 22.64 Metagenome 3300042917 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-338 Genome Quebec 3300042917 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.302656 -119.571005 985792366 1969812 450 67 685 101 0.0 Metagenome 3300008969 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Final time point T34 (2) (BES) benzoate enrichments of Methanogenic microbial communities using Athabasca oil sands as inoculum DE NOVO (2) Shell Corporation 3300008969 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 64852292 207707 86 0 191 1 0.0 Metagenome 3300026156 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_A_D1_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026156 Metagenome Analysis spades v. 3.11.1 Yes Yes jzz0026@lbl.gov; stheroux@lbl.gov; sgtringe@lbl.gov Jinglie Zhou; Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4969 -122.1331 399945499 765619 375 4 566 7 SRX2523446 Unrestricted 0.0 Metagenome 3300071073 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_001-M-20190313-COMP-DNA1 3300071073 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 637300 2147 22 0 19 3 0.0 Metagenome 3300018040 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150 DOE Joint Genome Institute (JGI) 3300018040 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 1531650422 2857964 816 13 1360 15 SRX3960076 Unrestricted 9.6 Metagenome 3300049507 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MC24 DOE Joint Genome Institute (JGI) 3300049507 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 11781452 29360 63 2 130 3 Unrestricted 32.67 Metagenome 3300032144 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil DOE Joint Genome Institute (JGI) 3300032144 Metagenome Analysis spades v. 3.13.0 Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Environmental Terrestrial Garden Soil Unclassified soil 34.0136 -118.4673 3051175745 6909100 1772 76 2964 138 SRX6453253 Unrestricted 7.99 Metagenome 3300022857 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #419 DOE Joint Genome Institute (JGI) 3300022857 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 162523775 277174 88 21 138 23 SRX4396777 Unrestricted 16.57 Metagenome 3300048085 *Microbiome Permanent Draft Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA - 4_s_sep_JRB_CZO DOE Joint Genome Institute (JGI) 3300048085 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dawsonfairbanks@email.arizona.edu Dawson Fairbanks No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.8832033 -106.53744 443481013 784548 203 2 372 12 Unrestricted 15.68 Metagenome 3300009466 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 2m depth; DNA IDBA-UD Marine Biological Laboratory 3300009466 Metagenome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes jhuber@mbl.edu, jhuber@mbl.edu; jhuber@whoi.edu Huber, Huber; Julie Huber No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 7.4 281933334 617436 205 65 343 106 0.0 Metagenome 3300027278 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027278 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 197074790 427056 149 13 252 21 SRX2753580 Unrestricted 0.0 Metagenome 3300043263 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_3000m_C5_0cm2cm (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043263 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.799 -121.0256 179819410 284230 99 0 184 1 SRX9141700 Unrestricted 125.11 Metagenome 3300025120 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-28 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025120 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 48.9699 -130.6666 470744300 967390 3 0 6 0 SRX2553654 Unrestricted 0.0 Metagenome 3300031367 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-10 DOE Joint Genome Institute (JGI) 3300031367 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.759 -70.891 440798112 924846 301 2 547 2 SRX5358943 Unrestricted 13.22 Metagenome 3300035142 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0608U12 DOE Joint Genome Institute (JGI) 3300035142 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8973 -97.0409 761498973 1900227 681 16 1265 20 SRX8263236 Unrestricted 6.73 Metagenome 3300027712 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027712 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 46.8319 -72.5 638083715 1255488 360 57 524 108 SRX2954970 Unrestricted 0.0 Metagenome 3300046361 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_150 DOE Joint Genome Institute (JGI) 3300046361 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9703 -106.997 222728724 545846 519 169 924 248 Restricted 0.0 Metagenome 3300000608 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 13JUN2007 hypolimnion DOE Joint Genome Institute (JGI) 3300000608 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300005136 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage D2F12 DOE Joint Genome Institute (JGI) 3300005136 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 58179808 86853 82 0 80 0 SRX3195282 Unrestricted 0.0 Metagenome 3300000487 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes in water sample from Medicine Hat oil field -PW_MHGC_2012April2: McGill University 3300000487 Metagenome Analysis released per user request No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 50.033333 -110.666667 7.2 9984288 18732 21 0 30 0 0.0 Metagenome 3300042658 *Microbiome Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring and microbial mat streamer communities from Octopus Spring Streamers, Yellowstone National Park, USA - T=80-84 Octopus10% (version 3) DOE Joint Genome Institute (JGI) 3300042658 Metagenome Analysis SPADES v. 3.5.0 released based on JGI ITS Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson Yes 26140529 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring and microbial mat 44.5340836 -110.7978895 7.8 38789118 45639 19 0 18 0 Unrestricted 0.0 Metagenome 3300005669 *Microbiome Permanent Draft Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia Enhanced biological phosphorus removal bioreactor viral communities from the University of Queensland, Australia - SBR4-V90102 Phage Sequencing University of Queensland 3300005669 Metagenome Analysis CLC 6.0 Released per Connor Skennerton (Sep 15, 2015) No Yes c.skennerton@gmail.com Connor Skennerton No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor lab-scale EBPR bioreactor -27.49999 153.012098 20494559 36750 8 0 12 0 0.0 Metagenome 3300028503 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 3 Selected contigs with viral hallmark genes 2 Autonomous University of Barcelona 3300028503 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 698838 1014 0 0 0 0 0.0 Metagenome 3300026043 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleB_D2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026043 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.052509 -121.76873 50455269 139351 187 2 329 5 SRX7181947 Unrestricted 0.0 Metagenome 3300033701 *Microbiome Permanent Draft Marine Fish Microbial Metagenomes Atlantic cod gut microbial communities from Lofoten, Atlantic Ocean - L_10 Centre for Ecological and Evolutionary Synthesis (CEES), University of Oslo 3300033701 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton No Host-associated Fish Intestine Digestive system Unclassified fish gut 67.879188 14.106298 121041805 158212 7 4 11 20 0.0 Metagenome 3300014820 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A15_80cm_0.25M University of Tennessee 3300014820 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 209210540 427920 104 5 152 12 SRX710574 0.0 Metagenome 3300049496 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC25 DOE Joint Genome Institute (JGI) 3300049496 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 28077055 70767 111 2 231 3 Unrestricted 20.45 Metagenome 3300003474 *Microbiome Permanent Draft Estuary microbial community from Gulf of Naples, Italy Estuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 4 Stazione Zoologica Anton Dohrn 3300003474 Metagenome Analysis released per JGI data releasing policy No Yes stefan.thiele@szn.it Stefan Thiele Yes 28063827 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Estuarine 40.72683 14.46133 7.9 229876691 530018 396 4 710 4 ERX1032434 0.0 Metagenome 3300011839 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00276 Weill Cornell Medical College 3300011839 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.74 -73.98 44045908 65108 24 0 31 1 SRX822249 0.0 Metagenome 3300047384 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_131127.NP1 DOE Joint Genome Institute (JGI) 3300047384 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 898539797 1809016 552 87 870 138 Unrestricted 13.16 Metagenome 3300004829 *Microbiome Permanent Draft Marine and wastewater microbial communities from Korea, with extracellular vesicles Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs Chunlab, Inc 3300004829 Metagenome Analysis IDBA-1.1.1 released per JGI data release policy No Yes s-jkim@kiost.ac Sang-Jin Kim No Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Marine water 36.03776 129.386 42301071 79189 7 0 6 0 0.0 Metagenome 3300026963 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 E2 (SPAdes) DOE Joint Genome Institute (JGI) 3300026963 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov; 17826834892@163.com; raperrier@lbl.gov Jeff Kimbrel; wang binhao; Rene A. Perrier No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 68236433 109173 73 0 71 0 SRX3311490 Unrestricted 0.0 Metagenome 3300004454 *Microbiome Permanent Draft Stalagmite microbial communities from Echo Passage, Kartchner Caverns, Arizona, USA Stalagmite microbial communities from Echo Passage, Kartchner Caverns, Arizona, USA 454 Life Sciences 3300004454 Metagenome Analysis Newbler released per JGI data release policy No Yes bojanpapic1@gmail.com Bojan Papic No Environmental Terrestrial Unclassified Unclassified Unclassified Stalagmite 31.837801 -110.350292 136505679 424662 150 1 247 3 0.0 Metagenome 3300022756 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1 DOE Joint Genome Institute (JGI) 3300022756 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified groundwater sediment 38.9201 -106.9487 .05 2632210278 6307933 1206 30 2271 69 SRX4394284 Unrestricted 0.0 Metagenome 3300001830 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM40, ROCA_DNA028_0.2um_3l 3300001830 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River plume Marine Plankton Marine plankton 7.2875 -53.0005 42442613 102495 13 9 54 17 0.0 Metagenome 3300048999 *Microbiome Permanent Draft Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA - CNF8NT3 DOE Joint Genome Institute (JGI) 3300048999 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sydneyg@ucr.edu Sydney Glassman No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 33.6681 -117.456 2067763183 3275526 574 116 878 164 Unrestricted 15.65 Metagenome 3300071133 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_002-M-20170712-COMP-DNA2 3300071133 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 24820745 65438 24 0 65 0 0.0 Metagenome 3300014539 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 82_4M Beijing Genomics Institute (BGI) 3300014539 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 114763532 136541 57 0 61 0 ERX491312 0.0 Metagenome 3300035209 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_04D_18 DOE Joint Genome Institute (JGI) 3300035209 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9141 -147.834 1278586300 3041622 846 27 1432 32 SRX7633911 Unrestricted 6.99 Metagenome 3300026806 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A4a-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300026806 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 26717425 88900 88 2 152 2 SRX1991114 Unrestricted 0.0 Metagenome 3300009381 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159551223 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300009381 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes NMikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 172024706 237164 127 0 190 0 0.0 Metagenome 3300013613 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100143 University of Pennsylvania 3300013613 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 10838812 11207 4 1 8 3 SRX756389 0.0 Metagenome 3300038629 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_3000m_C5_0cm2cm DOE Joint Genome Institute (JGI) 3300038629 Metagenome Analysis metaspades v. 3.13.0 Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.799 -121.0256 2746591073 4423396 852 13 1399 13 SRX9141700 Unrestricted 18.11 Metagenome 3300011520 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00527 Weill Cornell Medical College 3300011520 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.97 25872784 31634 9 0 17 0 SRX822496 0.0 Metagenome 3300029037 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 42_M Beijing Genomics Institute (BGI) 3300029037 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 100682777 134092 89 0 154 0 ERX491142 0.0 Metagenome 3300064895 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0808 Microbiome Insights 3300064895 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.33140284 -114.1207075 81835127 119212 52 0 71 0 0.0 Metagenome 3300046486 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvCe-C(3) 10-14 DOE Joint Genome Institute (JGI) 3300046486 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0434 132043808 221118 109 3 160 3 Restricted 13.04 Metagenome 3300045210 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_4_D DOE Joint Genome Institute (JGI) 3300045210 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 187448951 220056 106 1 134 2 Unrestricted 102.99 Metagenome 3300024526 *Microbiome Permanent Draft bacteria associated with phytoplankton bloom Marine bacterial communities from Xiamen coast, China - E4 State Key Laboratory of Marine Environmental Sciences, Xiamen University 3300024526 Metagenome Analysis SOAP v. 3.3 released by JGI data releasing policy No Yes kt6mail@gmail.com Kai Tang No Environmental Aquatic Coastal Marine Unclassified Marine 24.28 118.2 403626942 951611 195 21 383 84 0.0 Metagenome 3300001529 *Microbiome Permanent Draft Sheep rumen microbial communities from New Zealand from high and low methane emitting sheep Sheep rumen microbial communities from New Zealand - Rank38_high DOE Joint Genome Institute (JGI) 3300001529 Metagenome Analysis Velvet Released because these are assemblies from SRA data No Yes janine.kamke@agresearch.co.nz, janine.kamke@uni-wuerzburg.de Janine Kamke No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen -40.352 175.608 382819862 804116 687 62 1200 109 0.0 Metagenome 3300043727 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - III_P72_A200 DOE Joint Genome Institute (JGI) 3300043727 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.2033 -62.7738 825239320 2265009 571 6 998 12 Unrestricted 7.95 Metagenome 3300048033 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_200521.NP1? DOE Joint Genome Institute (JGI) 3300048033 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 527354037 1085441 323 23 458 56 Unrestricted 19.28 Metagenome 3300012255 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100624 University of Pennsylvania 3300012255 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 23550689 57072 30 2 53 5 SRX756470 0.0 Metagenome 3300040499 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Taiga, AK, USA - HEAL_004-O-20160802-COMP-DNA1 Battelle Memorial Institute 3300040499 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.87569 -149.21334 3504791 10692 32 4 57 3 0.0 Metagenome 3300028409 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #190 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028409 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 55617317 91573 26 1 59 1 SRX3296256 Unrestricted 0.0 Metagenome 3300026131 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_D2_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026131 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Soil 37.4972 -122.1293 153084004 359154 230 2 418 7 SRX2523925 Unrestricted 0.0 Metagenome 3300011175 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 21 - S13.2.70.3.a - transect 2, repeat 3, age 2,000 years, surface depth) University of Bristol 3300011175 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes EAEloeFadrosh@lbl.gov; maisie.nash@bristol.ac.uk; ama@envs.au.dk Emiley Eloe-Fadrosh; Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 79.76833333 12.14361111 7.5 2019562 6905 21 3 60 2 0.0 Metagenome 3300029226 *Microbiome Permanent Draft North Pond 2017 Crustal fluid microbial communities from North Pond, Mid-Atlantic Ridge, Atlantic Ocean - 1383CM 2017 Marine Biological Laboratory 3300029226 Metagenome Analysis IDBA-UD v. 1.1.2 released by JGI data releasing policy No Yes lmseyler@gmail.com Lauren Seyler No Environmental Aquatic Oceanic Marine Crustal Fluids Oceanic crustal fluids 22.75 -46.083 73438514 80833 61 0 84 0 0.0 Metagenome 3300047560 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Huger Creek, Cordesville, South Carolina, USA - hugercreek_2019_sw_WHONDRS-S19S_0044 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047560 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 33.1307 -79.8101 392549071 630403 146 34 186 44 Unrestricted 0.0 Metagenome 3300020735 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 25JUL2007 hypolimnion DOE Joint Genome Institute (JGI) 3300020735 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 158939914 344575 128 7 205 16 Unrestricted 0.0 Metagenome 3300048889 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Soil microbial communities from greenhouse in W.K. Kellogg Biological Station, Michigan, USA - CIR soil_7t unlabeled DOE Joint Genome Institute (JGI) 3300048889 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Environmental Terrestrial Unclassified Soil Unclassified Soil 42.40581 -85.40228 1536580496 2585974 535 29 867 41 Unrestricted 14.2 Metagenome 3300022516 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 30-34 DOE Joint Genome Institute (JGI) 3300022516 Metagenome Analysis spades v. 3.11.1-check Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 112044389 276983 129 0 205 0 SRX4415327, SRX8128002 Unrestricted 0.0 Metagenome 3300005151 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F08 DOE Joint Genome Institute (JGI) 3300005151 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 47635151 66774 79 0 111 0 SRX3195097 Unrestricted 0.0 Metagenome 3300070626 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_070-O-20190618-COMP-DNA1 3300070626 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 55993634 152647 51 4 128 13 0.0 Metagenome 3300071041 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_003-M-20180709-COMP-DNA1 3300071041 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 14441021 46556 70 6 148 9 0.0 Metagenome 3300029906 *Microbiome Permanent Draft Fecal microbial communities from lean and fat line chickens in Harbin, China Fecal microbial communities from Lean line chicken in Harbin, China - MGJ4 Inner Mongolia Agricultural University 3300029906 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Birds Large intestine Digestive system Fecal Fecal 45.73 126.73 237123129 353552 322 2 510 6 SRX2066134 0.0 Metagenome 3300025968 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLA_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025968 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.224518 -122.019257 149422177 311140 199 3 314 4 SRX7142960 Unrestricted 0.0 Metagenome 3300019725 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BLT_1-2_MG DOE Joint Genome Institute (JGI) 3300019725 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 116636223 286974 233 21 441 39 SRX3982766 Unrestricted 3.63 Metagenome 3300012810 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched chicken feces microbial communities from UW Madison campus, WI, USA - DID2882_E24 MG DOE Joint Genome Institute (JGI) 3300012810 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie Yes 29545786 Host-associated Birds Large intestine Digestive system Fecal feces 43.073 -89.4011 70033963 95832 53 0 64 0 SRX3564706 Unrestricted 0.0 Metagenome 3300010236 *Microbiome Permanent Draft Terrestrial oil reservoir microbial communities from Alaska Terrestrial oil reservoir microbial community from Schrader Bluff Formation, Alaska - SB1 Yale Center for Genome Analysis 3300010236 Metagenome Analysis idba-ud released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis Yes 26787827 Environmental Terrestrial Unclassified Oil reservoir Unclassified produced fluid 70.4 -148.7 353640243 1085281 529 6 1249 30 0.0 Metagenome 3300028615 *Microbiome Permanent Draft Deep ocean water column microbial communities from Yap Trench, western Pacific Ocean Seawater microbial communities from Yap Trench, western Pacific Ocean - 37I-Yap-CTD02-50m 2000bp_Newsun Novogene 3300028615 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Ocean trench Marine Unclassified seawater 9.87 138.5 148282539 163174 84 5 89 5 0.0 Metagenome 3300045855 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Microbial mat bacterial communities from riparian zone, North Slope, Alaska, United States - OKS_BSeep2A_28June2019 DOE Joint Genome Institute (JGI) 3300045855 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes demerson@bigelow.org David Emerson No Environmental Terrestrial Unclassified Soil Riparian soil riparian zone microbial mat 68.6721 -149.1359 230811065 405490 268 149 455 206 Unrestricted 23.42 Metagenome 3300005282 *Microbiome Draft Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA Microbial communities from bioreactor (seeded with anoxic lake sediment) at LBNL, California, USA - Biofuel metagenome 1 version 3 (version 4) DOE Joint Genome Institute (JGI) 3300005282 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes hrbeller@lbl.gov Harry Beller Yes 29556105 Engineered Bioreactor Unclassified Anaerobic Unclassified Bioreactor 37.8754404 -122.2477251 328301056 707903 406 11 707 4 Unrestricted 0.0 Metagenome 3300000563 *Microbiome Draft Alkaline sediment microbial communities from Soda lakes and Soda Solonchak soils Alkaline sediment microbial communities from Cock Soda Lake, Kulunda Steppe, Russia - 3KL_010_SED DOE Joint Genome Institute (JGI) 3300000563 Metagenome Analysis released based on JGI ITS Yes Yes g.muijzer@uva.nl Gerard Muyzer No Environmental Aquatic Alkaline Non-marine Saline and Alkaline Sediment Alkaline sediment 52.06 79.09 1014733126 2206504 1108 11 1911 32 Unrestricted 0.0 Metagenome 3300025048 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes) DOE Joint Genome Institute (JGI) 3300025048 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 50.0003 -144.9998 140205825 290660 62 0 92 0 Unrestricted 0.0 Metagenome 3300020229 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L442-12m DOE Joint Genome Institute (JGI) 3300020229 Metagenome Analysis spades v. 3.10.1 Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.775 -93.818 463474208 1044139 323 85 551 159 SRX3984351 Unrestricted 24.54 Metagenome 3300033077 *Microbiome Finished Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman HAN_GUM Chunlab, Inc 3300033077 Metagenome Analysis SPAdes v. 3.8.2 released by JGI data releasing policy No Yes chojc@inha.ac.kr; krmoon518@gmail.com Jang-Cheon Cho; Kira Moon No Environmental Aquatic River Freshwater Unclassified Freshwater 38.0874861 127.761456 20193502 29269 0 0 0 0 0.0 Metagenome 3300002819 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G01K4-12 DOE Joint Genome Institute (JGI) 3300002819 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 2765209 8893 69 3 83 3 SRX1991290 Unrestricted 0.0 Metagenome 3300002284 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP03-I3 3300002284 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300039592 *Microbiome Permanent Draft Glacier soil microbial communities from Mackay Glacier, Antarctica Glacier soil microbial communities from Mackay Glacier, Antarctica - MS5-1 University of Pretoria 3300039592 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Terrestrial Glacier Soil Unclassified Glacier soil -77.026 161.672 89028414 170255 62 0 145 1 0.0 Metagenome 3300048867 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD22 DOE Joint Genome Institute (JGI) 3300048867 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.347657 -119.2808 104150742 124322 8 12 12 19 Unrestricted 336.93 Metagenome 3300025915 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025915 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.4774 -85.451 2970155547 7042865 1333 60 2456 106 SRX2745055 Unrestricted 0.0 Metagenome 3300045286 *Microbiome Permanent Draft Sediment microbial communities from various rivers and their estuaries in the United States Sediment microbial communities from Fowl River, Texas, United States - BTRS19_Sengupta_6F DOE Joint Genome Institute (JGI) 3300045286 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sg.aditi@gmail.com Aditi Sengupta No Environmental Aquatic River Freshwater Sediment sediment 28.2913 -97.2784 834010231 1446023 501 48 893 73 Unrestricted 20.2 Metagenome 3300044635 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME26Jul2015-rr0898 DOE Joint Genome Institute (JGI) 3300044635 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1011410197 1554447 432 97 618 169 Unrestricted 16.43 Metagenome 3300003891 *Microbiome Permanent Draft Hot spring sediment microbial communities from Chocolate Pots, Yellowstone National Park, Wyoming that are Fe(III) reducing Hot spring sediment microbial communities from Chocolate Pots, Yellowstone National Park, Wyoming that are Fe(III) reducing sample CP Core 1 1cm University of Wisconsin, Madison 3300003891 Metagenome Analysis CLC Genomics released per JGI data release policy Yes Yes bconverse@wisc.edu Brandon Converse No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediments 44.427936 -110.588466 299490222 611581 327 2 470 5 0.0 Metagenome 3300000327 *Microbiome Permanent Draft Marine microbial communities from a deep-sea hydrothermal vent at Loihi Seamount, Hawaii Marine microbial communities from hydrothermal vents at Loihi seamountain, Hawaii - Spillway-mat Pennsylvania State University 3300000327 Metagenome Analysis Mira v. 3.4.0.1, Geneious v. 5.4.6 public because it has a genbank ID No Yes esthersi@usc.edu Esther Singer Yes 23518919 Environmental Aquatic Hydrothermal vents Marine Microbial mats Marine 18.91 -155.26 8 8401934 9317 7 0 7 0 0.0 Metagenome 3300012996 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Fungus gardens microbial communities from leaf cutter ant in Botucatu, State of S?o Paulo, Brazil - Atta capiguara ACBM2 DOE Joint Genome Institute (JGI) 3300012996 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Fungi Unclassified Mycelium Unclassified fungus garden -22.846 -48.434 260748832 462917 1383 34 2570 82 Unrestricted 116.7 Metagenome 3300065520 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 791 in Vulcan, Alberta, Canada - S00JY_0366 Microbiome Insights 3300065520 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 50.2910242 -113.1540896 44073947 69068 13 0 36 0 0.0 Metagenome 3300028582 *Microbiome Permanent Draft Sewage microbial communities from Oakland, California, United States Sewage microbial communities from Oakland, California, United States - Biofuel 11 (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300028582 Metagenome Analysis spades v. 3.11.1 Yes Yes hrbeller@lbl.gov Harry Beller No Engineered Wastewater Unclassified Sewage Unclassified sewage 37.82 -122.29 260064811 335249 173 0 195 0 SRX8667837, SRX8667836 Unrestricted 139.9 Metagenome 3300048792 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-P1(1) 20-24 DOE Joint Genome Institute (JGI) 3300048792 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.355 19.0438 459865777 723136 130 3 218 4 Restricted 14.95 Metagenome 3300027441 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G07K4-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300027441 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 11226185 39639 54 3 113 3 SRX1991265 Unrestricted 0.0 Metagenome 3300070809 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Environmental Research Center, Maryland, USA - SERC_005-M-20170711-COMP-DNA1 3300070809 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 1749301 5746 21 2 39 4 0.0 Metagenome 3300046410 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA088-BCT DOE Joint Genome Institute (JGI) 3300046410 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6779 -83.4786 577187874 1483783 308 45 644 60 Unrestricted 8.35 Metagenome 7000000570 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 764143897 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000570 Metagenome Analysis No Yes ipagani@lbl.gov Ionna Pagani No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 110221951 169098 0 0 0 0 0.0 Metagenome 3300027579 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepC_8h DOE Joint Genome Institute (JGI) 3300027579 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 55421201 113088 63 6 113 9 SRX5245171 Unrestricted 14.24 Metagenome 3300024234 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-237 DOE Joint Genome Institute (JGI) 3300024234 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Unclassified Plant litter Unclassified leaf litter 40.2198 -122.9842 59148351 103813 20 30 18 41 SRX4392068 Unrestricted 67.06 Metagenome 3300050324 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_92 DOE Joint Genome Institute (JGI) 3300050324 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -76.91 160.935 579606888 853413 93 27 111 31 SRX18235972 Restricted 31.79 Metagenome 3300069577 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Mid-Atlantic, VA, USA - SCBI_012-M-20140915-COMP-DNA1 re-annotation Argonne National Laboratory 3300069577 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89292 -78.1395 3494225 11578 41 4 69 7 ERX2134036 0.0 Metagenome 3300036668 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Calendar Lake #24 DOE Joint Genome Institute (JGI) 3300036668 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5135 78.4501 261116254 401652 137 8 168 18 SRX8865255 Unrestricted 34.61 Metagenome 3300031854 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1 DOE Joint Genome Institute (JGI) 3300031854 Metagenome Analysis spades v. 3.13.0 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Bulk soil soil 39.6475 -79.9369 2640998970 6618271 1691 37 3012 74 SRX5809965 Unrestricted 7.28 Metagenome 3300037110 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPN1-1-S DOE Joint Genome Institute (JGI) 3300037110 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3569 19.0502 708610793 1232992 233 10 327 22 SRX8163122 Unrestricted 11.57 Metagenome 3300025362 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025362 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 90472821 193574 85 0 112 1 SRX2746697 Unrestricted 0.0 Metagenome 3300025740 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA6_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025740 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 37.43 138.83 631184691 1114968 512 3 726 6 SRX2338990 Unrestricted 0.0 Metagenome 3300007876 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 160643649 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007876 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 21818654 34426 17 5 22 8 SRX022967, SRX022966 0.0 Metagenome 3300000834 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 28JUN2007 epilimnion v7 (version 7) DOE Joint Genome Institute (JGI) 3300000834 Metagenome Analysis released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 2333491 2437 0 0 0 0 Unrestricted 0.0 Metagenome 3300027848 *Microbiome Permanent Draft Freshwater microbial communities from lake liftoff mats and glacier meltwater in Antarctica Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-01 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027848 Metagenome Analysis spades v. 3.11.1 Yes Yes slonczewski@kenyon.edu Joan Slonczewski No Environmental Aquatic Ice Freshwater Glacier meltwater Freshwater -77.714 162.445 1725856990 2607366 299 65 361 94 SRX2753507 Unrestricted 0.0 Metagenome 3300035663 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Sep2015-rr0184 DOE Joint Genome Institute (JGI) 3300035663 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1425084240 2707173 743 190 1144 314 SRX8207685 Unrestricted 11.11 Metagenome 3300028744 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367 DOE Joint Genome Institute (JGI) 3300028744 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040645 -106.94847615 770588613 1946794 421 5 754 6 SRX5355416 Unrestricted 13.08 Metagenome 3300047647 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BT-preinc-02redo (version 2) DOE Joint Genome Institute (JGI) 3300047647 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3555 19.0492 202899348 368880 130 15 206 19 Restricted 0.0 Metagenome 3300038963 *Microbiome Permanent Draft Freshwater sediment microbial communities from Chandeleur Islands, USA Subtidal sediment core microbial communities from Chandeleur Islands, USA - SSubC5 University of Alabama 3300038963 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Wetlands Freshwater Sediment Subtidal sediment core 29.862806 -88.841194 8704343 29464 39 0 50 0 0.0 Metagenome 3300006482 *Microbiome Permanent Draft Microbial communities from manure storage tank from Sherbrooke, QC, Canada Microbial communities from pig manure storage tank from Sherbrooke, QC, Canada, enriched culture C10 Agriculture and Agri-Food Canada 3300006482 Metagenome Analysis Trinity released per JGI data release policy No Yes jennifer.town@agr.gc.ca, Jennifer.town@agr.gc.ca Jennifer Town No Engineered Solid waste Unclassified Animal waste Unclassified Manure 45.4 -71.9 43383381 75753 66 2 125 2 0.0 Metagenome 3300003498 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_130m_DNA DOE Joint Genome Institute (JGI) 3300003498 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 232325357 475620 209 14 371 21 Unrestricted 0.0 Metagenome 3300029534 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P093V1 Beijing Genomics Institute (BGI) 3300029534 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 96068237 102237 47 0 60 0 0.0 Metagenome 3300003981 *Microbiome Permanent Draft Diffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge Diffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge - MGW_A Max Planck Institute for Plant Breeding Research 3300003981 Metagenome Analysis idba_ud500 released per JGI data release policy Yes Yes dmeier@mpi-bremen.de, dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse Hydrothermal vent 90566072 116630 136 19 177 22 0.0 Metagenome 3300012886 *Microbiome Permanent Draft Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA Microbial communities from bioreactor (seeded with sewage sludge) at Lawrence Berkeley National Lab, California, USA - Biofuel Metagenome 8 (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300012886 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes hrbeller@lbl.gov Harry Beller Yes 29556105 Engineered Bioreactor Unclassified Anaerobic Unclassified Bioreactor 37.82 -122.29 407855438 683253 1607 0 2988 0 SRX2769834, SRX2769835, SRX2769836, SRX2769832, SRX2769833 Unrestricted 0.0 Metagenome 3300026629 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK08-C (SPAdes) DOE Joint Genome Institute (JGI) 3300026629 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.4 2300506 6864 40 2 75 3 SRX1991362 Unrestricted 0.0 Metagenome 3300038806 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - SI165M (SPAdes) Columbia University 3300038806 Metagenome Analysis spades v. 3.11.1 released by JGI data releasing policy Yes Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Inlet Marine Unclassified marine 48.6 -123.5 22947257 36139 1 0 1 0 0.0 Metagenome 3300006160 *Microbiome Finished Hypersaline microbial communities from the Dead Sea Hypersaline microbial communities from the Dead Sea 1992 bloom Technion-Israel Institute of Technology 3300006160 Metagenome Analysis Newbler released per PI No Yes redcancerbero@gmail.com, alm067@ucsd.edu Alvaro M. Plominsky No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Dead Sea 31.416667 35.483333 0 0 0 0 0 0 0.0 Metagenome 3300042790 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2015_5_14 NMDC pilot DOE Joint Genome Institute (JGI) 3300042790 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 6410104 8603 15 6 33 5 SRX2925235 0.0 Metagenome 3300007618 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1554A-02 DOE Joint Genome Institute (JGI) 3300007618 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2871 -123.9424 395807959 755224 340 15 549 25 SRX2753735 Unrestricted 0.0 Metagenome 3300022580 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 3 Selected contigs with viral hallmark genes Autonomous University of Barcelona 3300022580 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 953530 1412 0 0 0 0 0.0 Metagenome 3300021468 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-3-4_MG DOE Joint Genome Institute (JGI) 3300021468 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.0114 -110.5956 516607444 1034703 593 1 885 5 SRX3982322 Unrestricted 15.45 Metagenome 3300039254 *Microbiome Permanent Draft Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada - low-flow bush MVw13 Dalhousie University 3300039254 Metagenome Analysis Megahit v. 1.2.8 released by JGI data releasing policy No Yes smurdock@uvic.ca Sheryl Murdock No Environmental Aquatic Hydrothermal vents Marine Tubeworm bush tubeworm bush 48.4553 -129.7086 902422886 1873348 732 29 1089 33 0.0 Metagenome 3300020702 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 12JUL2007 hypolimnion DOE Joint Genome Institute (JGI) 3300020702 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 79125120 172416 96 17 176 32 Unrestricted 0.0 Metagenome 3300029261 *Microbiome Permanent Draft ACE Virus Marine viral community from the Austral Polar Province, Southern Ocean - ACE 064VD University of Michigan 3300029261 Metagenome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes duhaimem@umich.edu Melissa Duhaime No Environmental Aquatic Unclassified Marine Unclassified Marine -62.3239 147.4162 133631373 202215 120 4 151 16 0.0 Metagenome 3300050511 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation DOE Joint Genome Institute (JGI) 3300050511 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Host-associated Plants Rhizosphere Roots Soil Populus rhizosphere 35.8444 -83.9599 3852360779 8082964 1805 71 3063 135 SRX2748709, SRX2748708, SRX2748710 0.0 Metagenome 3300070661 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_037-M-20190717-COMP-DNA1 3300070661 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 14264618 45346 54 11 94 15 0.0 Metagenome 3300046734 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_180725.NP2 DOE Joint Genome Institute (JGI) 3300046734 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 714979339 1474437 409 70 600 119 Unrestricted 12.41 Metagenome 3300001383 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012 DOE Joint Genome Institute (JGI) 3300001383 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 50485077 112524 67 6 102 7 SRX1987666 Unrestricted 0.0 Metagenome 3300021415 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - L3s1 DOE Joint Genome Institute (JGI) 3300021415 Metagenome Analysis spades v. 3.11.1-check Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9137 -106.8949 116591409 263047 181 18 418 19 SRX3943007, SRX3943008 Unrestricted 0.0 Metagenome 3300007665 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1557A-3 DOE Joint Genome Institute (JGI) 3300007665 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2763 -124.0055 189613427 389949 305 91 531 167 Unrestricted 4.36 Metagenome 3300016636 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water reservoir in Singapore - WB_Site 5b, Oct Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016636 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Lake Freshwater Unclassified freshwater 1.35 103.87 21211271 25033 2 2 3 0 0.0 Metagenome 7000000125 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764325968 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000125 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 104272844 188074 0 0 0 0 0.0 Metagenome 3300030463 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces viral communities from colorectal cancer patient in Houston, USA - MG100073 University of Michigan 3300030463 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 29.76 -95.37 1035438 1766 1 0 1 0 0.0 Metagenome 3300007957 *Microbiome Permanent Draft Microbial communities from Columbia River Estuary, Oregon, USA Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459A_3.0um Oregon State University 3300007957 Metagenome Analysis megahit released per JGI data release policy Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Coastal Marine Unclassified estuary water 46.2335 -123.9142 144212727 288414 147 226 252 397 0.0 Metagenome 3300029450 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001828-41 Beijing Genomics Institute (BGI) 3300029450 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 62294828 78100 49 0 55 0 0.0 Metagenome 3300042074 *Microbiome Permanent Draft Forest and sugarcane field soil microbial communities from Santa Rita do Passa , Quatro, Sao Paulo, Brazil Soil microbial communities from sugarcane field in Santa Rita do Passa , Quatro, Sao Paulo, Brazil - SUG-D_3 UNESP-FCAV 3300042074 Metagenome Analysis Custom JGI assembly. Yes Yes No Environmental Terrestrial Unclassified Soil Agricultural land Soil -21.708519 -47.582469 11778237 32118 31 0 32 0 SRX9176017 0.0 Metagenome 3300009492 *Microbiome Permanent Draft Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin Marine sediment microbial communities from Chincoteague Deepwater methane seep, US Atlantic Margin - Chincoteague Seep MUC-5 6-8 cmbsf Oregon State University 3300009492 Metagenome Analysis MetaSPAdes released per JGI data release policy No Yes rcolwell@coas.oregonstate.edu Frederick Colwell No Environmental Aquatic Cold seeps Marine Sediment methane seep 37.5409 -74.10211667 499852515 1778566 398 31 862 62 0.0 Metagenome 3300001654 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN614 DOE Joint Genome Institute (JGI) 3300001654 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 1677 7 1 0 1 0 SRX1986974 Unrestricted 0.0 Metagenome 3300048635 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent flluid microbial communities from North Pacific Ocean - A5006-2E DOE Joint Genome Institute (JGI) 3300048635 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent flluid 9.838 -104.2914 461900114 824557 603 36 892 40 Unrestricted 34.4 Metagenome 3300034131 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 7HMS DOE Joint Genome Institute (JGI) 3300034131 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Sub-biocrust Soil Unclassified sub-biocrust soil 34.7856 -115.66 184694778 491778 369 20 687 14 SRX7615375 Unrestricted 9.32 Metagenome 3300006868 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA DOE Joint Genome Institute (JGI) 3300006868 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 756593175 2043263 571 243 855 408 SRX2892663 Unrestricted 0.0 Metagenome 3300069224 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Santa Rita Experimental Range, Tucson, Arizona, USA - SRER_052-M-20210810-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069224 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Desert Soil Unclassified Terrestrial soil 31.909531 -110.833359 3658773488 8595979 2465 23 4711 29 0.0 Metagenome 3300045935 *Microbiome Permanent Draft Forest soil microbial communities from boreal-temperate forests in Minnesota, USA Forest soil microbial communities from Hubachek Wilderness Research Center, Ely, Minnesota, USA - Ely DRY WD L5 DOE Joint Genome Institute (JGI) 3300045935 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pankaj.trivedi@colostate.edu Pankaj Trivedi No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 47.55 -92.3 495561345 846668 212 14 417 13 Unrestricted 18.08 Metagenome 3300013948 *Microbiome Permanent Draft Coral microbial communities from home aquarium in Belgium and Reunion Island, France Coral microbial communities from a home aquarium in Belgium - AM-T0-control A University of Mons 3300013948 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Invertebrates Coral Cnidaria Unclassified Coral tissue 50.45 3.93 171839830 292944 0 9 1 13 SRX540234 0.0 Metagenome 3300043201 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_1 (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043201 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 197290734 335803 64 2 113 3 SRX9140427 Unrestricted 75.78 Metagenome 3300013015 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in West Virginia, USA - MSEEL Well Study Marcellus 3H_2016_09_14 DOE Joint Genome Institute (JGI) 3300013015 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back deep subsurface 39.6017 -79.9761 16240183 30724 96 0 165 0 SRX3021892 Unrestricted 311.5 Metagenome 3300069442 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_059-O-20160720-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069442 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 14020843 44881 45 4 93 9 0.0 Metagenome 3300056772 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - 2-1 DOE Joint Genome Institute (JGI) 3300056772 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 61124619 144638 197 6 377 6 Restricted 9.34 Metagenome 3300028561 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant16 DOE Joint Genome Institute (JGI) 3300028561 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1150727 -123.147 796838785 1364703 751 12 1122 16 SRX5248463 Unrestricted 35.92 Metagenome 3300030930 *Microbiome Permanent Draft Dolichoderus ant bacterial communities Ant gut bacterial community from Pseudomyrmex nigropilosus larvae, the Area de Conservacion Guanacaste, Costa Rica - colony BER0554 University of Chicago 3300030930 Metagenome Analysis IDBA v. 1.1.1 released by JGI data releasing policy Yes Yes yihu.bnu@gmail.com Yi Hu No Host-associated Arthropoda: Insects Gut Digestive system Unclassified ant gut 10.8 -85.6 23822153 29401 2 0 4 0 0.0 Metagenome 3300029076 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 18_4M Beijing Genomics Institute (BGI) 3300029076 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 57879245 60543 29 0 37 0 ERX490985 0.0 Metagenome 3300044792 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - FA_A25 DOE Joint Genome Institute (JGI) 3300044792 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.1331 -62.8882 898009763 2360370 341 7 697 15 Unrestricted 9.32 Metagenome 3300024582 *Microbiome Permanent Draft Termite guts microbial communities from Mau, Uttar Pradesh, India Termite guts microbial communities from Mau, Uttar Pradesh, India - S1 National Bureau of Agriculturally Important Microorganisms, Indian Council of Agricultural Research 3300024582 Metagenome Analysis Metaspades v. 3.11 released by JGI data releasing policy No Yes arjun.iari@gmail.com Arjun Singh No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 25.949638 83.558647 311587646 508780 128 15 230 22 0.0 Metagenome 3300038554 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Desmonostoc vinosum HA7617-LM4 and co-occurring heterotrophs from cave wall surface from Waikapalae cave, Hawaii, United States - 20190625_16 DOE Joint Genome Institute (JGI) 3300038554 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Cave Deep subsurface Wall surface Cave wall surface 22.2202 -159.5794 35759227 39755 8 3 8 7 SRX9404611 Unrestricted 281.19 Metagenome 3300053108 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere DOE Joint Genome Institute (JGI) 3300053108 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.587694 -123.193368 401473248 876260 307 57 523 101 Unrestricted 0.0 Metagenome 3300040715 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_051-M-20170614-COMP-DNA1 Battelle Memorial Institute 3300040715 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 12124706 35297 66 13 92 22 0.0 Metagenome 3300020079 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Xylan, Gen0, Rep 3 DOE Joint Genome Institute (JGI) 3300020079 Metagenome Analysis spades v. 3.10.1 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4148 -119.8405 542910111 1022910 839 30 1297 69 SRX3963383 Unrestricted 52.6 Metagenome 3300037122 *Microbiome Permanent Draft Outdoor air microbial communities from various locations in the west coast of the United States Outdoor air microbial communities from Colorado State University Foothills Campus, Fort Collins, CO, USA - KA2 DOE Joint Genome Institute (JGI) 3300037122 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes paul.demott@colostate.edu Paul DeMott No Environmental Air Unclassified Outdoor Air Unclassified terrestrial aerosol 40.5885 -105.1479 416962639 1072534 1089 260 1952 404 SRX10084572 Unrestricted 10.51 Metagenome 7000000149 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763435843 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000149 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 17827319 37078 0 0 0 0 0.0 Metagenome 3300027140 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepC_8h DOE Joint Genome Institute (JGI) 3300027140 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 120864944 250048 127 10 196 21 SRX5245184 Unrestricted 17.84 Metagenome 3300028234 *Microbiome Permanent Draft Gypsum Hill Spring sediment microbiome from environmental samples in Axel Heiberg Island, Canada Gypsum Hill Spring sediment microbial communities from Axel Heiberg Island, Canada - GH4 McGill University 3300028234 Metagenome Analysis canu v. 1.7 released by JGI data releasing policy No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Sediment Spring sediment 79.408333 -90.71805556 45838923 64519 2 0 0 0 0.0 Metagenome 3300041064 *Microbiome Permanent Draft Contaminated soil microbial communities from Humid Pampas, Chascomus Partido, Argentina Contaminated soil microbial communities from Humid Pampas, Chascomus Partido, Argentina - L3_765 Illumina 3300041064 Metagenome Analysis Megahit v. 1.2.10 released by JGI data releasing policy No Yes valeria.imperato@uhasselt.be Valeria Imperato No Environmental Terrestrial Unclassified Soil Agricultural land Contaminated soil -35.5787 -58.0138 8450098 19826 38 2 57 2 0.0 Metagenome 3300026057 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026057 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.107536 -121.649704 90422490 230911 180 10 331 22 SRX7188820 Unrestricted 0.0 Metagenome 3300033691 *Microbiome Permanent Draft Metagenomic SGS 2x251 Cornfield soil microbial communities from Madison, WI, USA - CF5 Illumina 3300033691 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Agricultural land Soil 43.056543 -89.477477 1086835901 2869780 569 14 850 28 0.0 Metagenome 3300025381 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE19Jun07 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025381 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Bog lake Freshwater Unclassified Freshwater 46.0072 -89.6063 118355221 248896 72 16 114 23 SRX2565406 Unrestricted 0.0 Metagenome 3300005037 *Microbiome Permanent Draft Acesta excavata gill symbiont microbial communities from a Lophelia reef in the Norwegian Sea Acesta excavata gill symbiont microbial communities from a Lophelia reef in the Norwegian Sea Norwegian Sequencing Centre (NSC) 3300005037 Metagenome Analysis IDBA released per JGI data release policy No Yes sigmundje@gmail.com Sigmund Jensen No Host-associated Mollusca Gills Respiratory system Unclassified Acesta excavata gill symbiont 63.17343 6.71989 199191665 301748 1 0 1 1 0.0 Metagenome 3300022478 *Microbiome Permanent Draft Human saliva microbial communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva microbial communities from oral cavities of IgA immunodeficiency people from Alicante, Spain - individual 10 Autonomous University of Barcelona 3300022478 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.38 -0.51 6134852 8428 12 0 8 0 0.0 Metagenome 3300041944 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from the Rocky Mountain Biological Laboratory (RMBL), Gothic, Colorado, United States - 2009WM_7C DOE Joint Genome Institute (JGI) 3300041944 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9595 -106.99 114776229 340870 225 23 400 26 SRX14812265 Unrestricted 7.61 Metagenome 3300041402 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_3000m_C1_20cm DOE Joint Genome Institute (JGI) 3300041402 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Intertidal zone Marine Estuary: Microbial mat sediment 36.799 -121.0256 1371813889 2300627 580 1 1065 2 SRX9603889 Unrestricted 15.19 Metagenome 3300026645 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -Nitrogen NN342 (SPAdes) DOE Joint Genome Institute (JGI) 3300026645 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 3077562 10174 32 2 60 6 SRX3311792 Unrestricted 0.0 Metagenome 3300040768 *Microbiome Finished Marine bacterial communities from Black Sea, Georgia Marine microbial communities from Black Sea, Poti, Georgia - P21 NCDC Lugar Center, Georgia 3300040768 Metagenome Analysis Denovo v. 3.2 released by JGI data releasing policy No Yes iakusradze@pha.ge Ia Kusradze No Environmental Aquatic Unclassified Marine Unclassified Marine 42.1583 41.5711 10083224 10991 13 7 21 8 0.0 Metagenome 3300029151 *Microbiome Permanent Draft Infant fecal microbial communities from Pittsburgh, USA Infant fecal microbial communities from Pittsburgh, USA - NECEvent2014_6_2 Banfield Lab, University of California, Berkeley 3300029151 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant fecal 40.4308 -79.9598 17760052 21420 21 0 29 0 0.0 Metagenome 3300011685 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00844 Weill Cornell Medical College 3300011685 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.72 -73.99 10426538 16251 9 0 17 0 SRX822810 0.0 Metagenome 3300039164 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Natural salt marsh sediment microbial communities from Fingringhoe Range, United Kingdom - W FRNM 2A University of York 3300039164 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Natural salt marsh sediment 51.831817 0.9687 29408231 76923 58 0 103 0 0.0 Metagenome 3300049017 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - B25_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049017 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 273344101 634969 427 8 826 19 Unrestricted 0.0 Metagenome 3300002446 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Petrochemical wastewater microbial community from Syncrude tailings pond, Wood Buffalo, Alberta, Canada McGill University 3300002446 Metagenome Analysis released per JGI data release policy No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Lab enrichment Anaerobic media Defined media Unclassified Hydrocarbon resource environments 57.02 -111.55 354527985 423583 60 0 89 0 0.0 Metagenome 7000000488 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159753524 replicate 2 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000488 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 35857335 72500 0 0 0 0 0.0 Metagenome 3300037865 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - SOY_101317 DOE Joint Genome Institute (JGI) 3300037865 Metagenome Analysis metaspades v. 3.13.0 Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.8854 -89.3208 217133261 652888 462 11 810 25 SRX9603673 Unrestricted 6.18 Metagenome 7000000607 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765337473 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000607 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 21380566 40255 0 0 0 0 0.0 Metagenome 3300006250 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159510762 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006250 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 166145548 223684 139 0 134 0 0.0 Metagenome 3300035434 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A26_35cm_6M University of Tennessee 3300035434 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 58102520 126553 56 1 116 1 SRX710585 0.0 Metagenome 3300005906 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIRHL08 DOE Joint Genome Institute (JGI) 3300005906 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli, Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5602 78.1968 6515157 14069 8 0 10 0 SRX2747201 Unrestricted 0.0 Metagenome 3300026292 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026292 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 598061872 1262745 472 24 810 27 SRX2782415 Unrestricted 0.0 Metagenome 3300049366 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC34 DOE Joint Genome Institute (JGI) 3300049366 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 31644210 85048 113 2 300 8 Unrestricted 52.4 Metagenome 3300057011 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M2P_18_20 DOE Joint Genome Institute (JGI) 3300057011 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0099406 -81.5672344 825645144 1311615 496 3 808 2 Unrestricted 12.5 Metagenome 3300003962 *Microbiome Permanent Draft Activated sludge microbial communities from Ingolstadt, Germany, from a nitrification basin Activated sludge microbial communities from Ingolstadt, Germany, from a nitrification basin Aalborg University 3300003962 Metagenome Analysis CLC released per JGI data release policy No Yes wagner@microbial-ecology.net Michael Wagner No Engineered Wastewater Unclassified Activated Sludge Unclassified wastewater 48.7 11.42 31388381 43360 12 0 25 0 0.0 Metagenome 3300037818 *Microbiome Permanent Draft Bacterial communities from sewage treatment works near Birtley, UK Bioelectrochemical system biofilm bacterial communities from sewage treatment works near Birtley, UK - 20 Northumbria University 3300037818 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes martin.spurr@newcastle.ac.uk Martin Spurr No Engineered Bioreactor Unclassified Anaerobic Unclassified wastewater 54.903212 -1.595078 15375668 31921 65 3 108 2 0.0 Metagenome 3300010277 *Microbiome Permanent Draft Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 4_13_20_68_A1 metaG DOE Joint Genome Institute (JGI) 3300010277 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes Steve.Brown@lanzatech.com Steven Brown Yes 30202438 Engineered Bioreactor Anaerobic Semi-continuous Digestate Switchgrass degrading 43.726 -72.1429 269790837 417407 575 3 717 8 SRX3290058 Unrestricted 0.0 Metagenome 3300028013 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Soil microbial communities from Maridalen valley, Oslo, Norway - NSE2 DOE Joint Genome Institute (JGI) 3300028013 Metagenome Analysis spades v. 3.11.1 Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 59.9982 10.7894 32090997 90903 89 24 198 53 SRX5271700 Unrestricted 7.65 Metagenome 3300040387 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Woodworth, Northern Plains, ND, USA - WOOD_044-M-20170711-COMP-DNA1 Battelle Memorial Institute 3300040387 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12823 -99.24136 5665718 16012 31 4 56 5 0.0 Metagenome 3300038714 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample30 King Abdulaziz City for Science and Technology (KACST) 3300038714 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 23.36 37.3 50351605 114130 51 0 99 0 SRX1097597 0.0 Metagenome 3300005226 *Microbiome Permanent Draft Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich - 56s-102 University of Cincinnati 3300005226 Metagenome Analysis Velvet v. 0.7.57 released per JGI data release policy No Yes rlamendella@lbl.gov Regina Lamendella No Environmental Aquatic Groundwater Freshwater Contaminated Groundwater 40.0 -74.5 0 0 0 0 0 0 0.0 Metagenome 3300006461 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158742018 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006461 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 121570612 176200 137 1 203 1 0.0 Metagenome 3300025230 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025230 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 126519028 168833 53 0 53 0 SRX2770588 Unrestricted 0.0 Metagenome 3300002505 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Neocapritermes taracua P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Nt197 P3 DOE Joint Genome Institute (JGI) 3300002505 Metagenome Analysis Yes Yes karen.rossmassler@gmail.com, NNIvanova@lbl.gov; brune@mpi-marburg.mpg.de Karen Rossmassler, Natalia Ivanova; Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 5.0626 -53.0462 885584058 2141418 1283 10 2253 12 SRX3329378 Unrestricted 0.0 Metagenome 3300021374 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08 DOE Joint Genome Institute (JGI) 3300021374 Metagenome Analysis spades v. 3.11.1-check Yes Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified exposed rock -19.28 -43.5919 1213852779 2891988 672 84 1214 141 SRX4020437 Unrestricted 9.57 Metagenome 3300009048 *Microbiome Permanent Draft Processed tobacco microbial communities from Domestic Moist Snuff USA Processed tobacco microbial communities from USA domestic moist snuff from retail store in Atlanta, GA, USA - Moist Snuff M1 2x mi-seq runs combined TW Centers for Disease Control and Prevention (CDC), USA 3300009048 Metagenome Analysis OMEGA 1.0.2 hash length 150 released per JGI data release policy Yes Yes wyu3@cdc.gov Tyx, Robert E. Tyx No Engineered Food production Unclassified Unclassified Unclassified Processed Tobacco 33.881 -84.294 27569069 31750 23 1 25 0 0.0 Metagenome 3300040555 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from LBJ National Grassland , Southern Plains, TX, USA - CLBJ_034-M-20160817-COMP-DNA1 Battelle Memorial Institute 3300040555 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 33.40123 -97.57 2588943 7968 19 0 53 1 0.0 Metagenome 3300001950 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Delaware Bay, New Jersey, USA - GS011 J. Craig Venter Institute (JCVI) 3300001950 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine 39.417778 -75.504166 79799345 138086 87 0 120 0 0.0 Metagenome 3300045308 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-482 Genome Quebec 3300045308 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 53.875399 -124.755299 1179516247 2773022 531 184 935 328 0.0 Metagenome 3300022871 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #95 DOE Joint Genome Institute (JGI) 3300022871 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 153918125 308456 123 0 215 0 SRX4395980 Unrestricted 23.36 Metagenome 2077657016 *Microbiome Permanent Draft Sulfur spring sediment and crust microbial communities from Zodletone, Oklahoma, USA Sulfur spring sediment and crust microbial communities from Zodletone, Oklahoma, USA - B4_filtered Mogene LC 2077657016 Metagenome Analysis none (individual reads) released per JGI data release policy No Yes aspain@ou.edu Anne M. Spain, Anne Spain No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Sulfur spring sediment and crust 35.100293 -98.749601 6.68-7.05 13633245 31284 0 0 0 0 0.0 Metagenome 3300035550 *Microbiome Permanent Draft STAs constructed wetland biome Wetland sediment microbial communities from Everglades, Florida, USA - STA55-Sample05_1 Merge05 University of Florida 3300035550 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy No Yes ng.hanh24@gmail.com Hanh Nguyen No Environmental Aquatic Wetlands Freshwater Sediment sediment 26.38 -80.51 6.6-8.4 125323930 163220 83 1 145 1 0.0 Metagenome 3300011959 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00351 Weill Cornell Medical College 3300011959 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.53 -74.18 43208028 76644 21 0 34 0 SRX822323 0.0 Metagenome 3300009968 *Microbiome Permanent Draft Deep sea sediment microbial communities from the Gulf of Mexico Deep sea sediment microbial communities from the Gulf of Mexico - treatment with crude oil and Corexit >4.5kb University of Texas, Austin 3300009968 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes derdner@utexas.edu; hernando.bacosa@utexas.edu Deana Erdner; Hernando Bacosa No Environmental Aquatic Sediment Marine Unclassified sediment 27.0 -88.0 19313384 20252 2 0 1 0 0.0 Metagenome 3300036526 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C7-9B DOE Joint Genome Institute (JGI) 3300036526 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 207545279 616624 367 7 691 19 SRX8815226 Unrestricted 5.17 Metagenome 3300070682 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_004-O-20180919-COMP-DNA1 3300070682 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 49467490 152572 106 20 216 39 0.0 Metagenome 3300069600 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Desert Southwest, AZ, USA - SRER_053-M-20170815-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069600 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.91068 -110.83549 5944268 18829 41 2 81 4 0.0 Metagenome 3300070515 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_047-M-20190313-COMP-DNA1 Battelle Memorial Institute 3300070515 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 37.101658 -119.734564 5.8-6.59 820926 2744 16 2 27 3 0.0 Metagenome 3300007511 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 250-2.7um, replicate b Georgia Genomics Facility 3300007511 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 1036147542 1143637 351 2 427 1 0.0 Metagenome 3300040644 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_003-M-20131217-COMP-DNA1 Argonne National Laboratory 3300040644 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 2140741 6109 36 6 77 14 ERX2133975 0.0 Metagenome 3300007837 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 159915365 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007837 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 1846001 5261 5 0 9 0 SRX023037, SRX023036 0.0 Metagenome 3300003368 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 DOE Joint Genome Institute (JGI) 3300003368 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 51.62 -128.09 391577947 868226 216 17 442 29 SRX2575213 Unrestricted 0.0 Metagenome 3300012118 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF #472 DOE Joint Genome Institute (JGI) 3300012118 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 95235823 192475 46 1 104 2 SRX3296276 Unrestricted 0.0 Metagenome 3300012165 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ026 MetaG DOE Joint Genome Institute (JGI) 3300012165 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.8721 -74.5207 253039275 460539 220 9 406 19 SRX3539461 Unrestricted 0.0 Metagenome 3300003315 *Microbiome Permanent Draft Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil, in a copper mine Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P2 sample University of Campinas 3300003315 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes danba.castro@gmail.com Daniel Castro No Environmental Terrestrial Unclassified Soil Mine drainage Ore pile and mine drainage contaminated soil -6.426389 -50.051389 303396466 445005 125 2 238 3 0.0 Metagenome 3300044999 *Microbiome Permanent Draft Soil microbial communities from Blodgett Forest Research Station, California, USA Soil microbial communities from Blodgett Forest Research Station, California, USA - BWE201406031C1020_TS DOE Joint Genome Institute (JGI) 3300044999 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.912 -120.6615 923791280 1501222 254 34 403 52 Unrestricted 13.1 Metagenome 3300043803 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME14Aug2018-rr0942 DOE Joint Genome Institute (JGI) 3300043803 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1766660287 2534419 547 97 790 129 Unrestricted 17.57 Metagenome 3300008454 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160643649 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008454 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 144889931 208374 126 0 182 0 0.0 Metagenome 3300069536 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Taiga, AK, USA - HEAL_004-O-20160802-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069536 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.87569 -149.21334 12588955 38983 76 5 136 11 0.0 Metagenome 7000000283 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 158458797 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000283 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 50063530 86427 0 0 0 0 0.0 Metagenome 3300070568 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_044-M-20170719-COMP-DNA2 Battelle Memorial Institute 3300070568 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 68.658157 -149.362189 5.96 2846035 8965 11 1 27 2 0.0 Metagenome 3300026714 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A1a-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026714 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 16099465 55103 74 2 137 3 SRX1991158 Unrestricted 0.0 Metagenome 3300031630 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #38 DOE Joint Genome Institute (JGI) 3300031630 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5735 77.9231 732856577 1608375 394 8 713 15 SRX5650065 Unrestricted 23.46 Metagenome 3300045222 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_5_C DOE Joint Genome Institute (JGI) 3300045222 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 153624991 174873 96 1 104 1 Unrestricted 104.23 Metagenome 3300030393 *Microbiome Permanent Draft Seawater microbial communities from Mediterranean Sea off the coast of Alicante, Spain Seawater microbial communities from Mediterranean Sea off the coast of Alicante, Spain - SWcel University Miguel Hernandez 3300030393 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Seawater 38.283333 -0.25 47713534 78072 38 0 56 0 0.0 Metagenome 3300009362 *Microbiome Permanent Draft Syntrophic microbial communities from biogas reactors in Seattle, WA Syntrophic microbial communities from biogas reactors - R1.C13.But.A IBDA Molecular Research LP (MR DNA) 3300009362 Metagenome Analysis IBDA-UD v 1.1 released per JGI data release policy Yes Yes ziels@uw.edu Ryan Ziels No Engineered Wastewater Unclassified Anaerobic digestor Unclassified anaerobic wastewater sludge 47.652555 -122.304991 350079844 537357 251 0 359 0 0.0 Metagenome 3300034629 *Microbiome Permanent Draft Extreme environments viral communities from various locations Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2600 DOE Joint Genome Institute (JGI) 3300034629 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified filtered seawater 14.7528 -44.9788 127262147 319752 22 3 24 2 SRX7583412 Unrestricted 61.39 Metagenome 3300055465 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.1W.13 SIP fraction DOE Joint Genome Institute (JGI) 3300055465 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 180446824 292769 129 10 201 11 Unrestricted 24.41 Metagenome 3300042224 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D174_3 DOE Joint Genome Institute (JGI) 3300042224 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 134057073 176250 76 6 115 13 Unrestricted 70.5 Metagenome 3300020245 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000459 (ERX556111-ERR599135) CEA Genoscope 3300020245 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -20.3976 -3.2009 148534233 363078 203 42 345 101 0.0 Metagenome 3300049514 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A25_B_5_drought DOE Joint Genome Institute (JGI) 3300049514 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 285755390 705620 501 35 1028 55 Unrestricted 16.19 Metagenome 3300045902 *Microbiome Permanent Draft Microbial mat bacterial communities from hot springs in Waikite Valley, Taupo Volcanic Zone, New Zealand Microbial mat bacterial communities from hot spring in Waikite Valley, New Zealand - LMW_ETR_NZ_2018_Waikite_7_2 DOE Joint Genome Institute (JGI) 3300045902 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes LMWARD@post.harvard.edu Lewis Ward No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats microbial mat -38.3276 176.3016 920136135 1212008 406 8 542 14 Unrestricted 37.51 Metagenome 3300015337 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12JUL2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015337 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 215944548 369679 12 104 10 187 SRX3923447 Unrestricted 7.64 Metagenome 3300045444 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-670 Genome Quebec 3300045444 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.203775 -124.014124 1386310172 2995827 620 203 971 367 0.0 Metagenome 3300019749 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BLT_4-5_MG DOE Joint Genome Institute (JGI) 3300019749 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 152674310 368809 242 33 454 77 SRX3983241 Unrestricted 4.05 Metagenome 3300011512 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00891 Weill Cornell Medical College 3300011512 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.9 23930527 30918 11 0 19 0 SRX822854 0.0 Metagenome 3300052793 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_TH_008D DOE Joint Genome Institute (JGI) 3300052793 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0513 10.45377 367195140 990334 372 20 682 34 Unrestricted 8.82 Metagenome 3300020370 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001029 (ERX556065-ERR599079) CEA Genoscope 3300020370 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -25.859 -111.6989 596009350 1566492 334 36 702 71 0.0 Metagenome 3300028526 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_07AUG2017_LD1 DOE Joint Genome Institute (JGI) 3300028526 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 58283685 108767 20 44 29 61 SRX5345908 Unrestricted 22.07 Metagenome 3300043046 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5NP15 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043046 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 25473527 59644 52 5 85 5 SRX8379426 Unrestricted 38.86 Metagenome 3300000954 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine sediment microbial community from Cabo Rojo, Puerto Rico - PR CR 10% Liquid 1 DOE Joint Genome Institute (JGI) 3300000954 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Coastal Marine Sediment Marine sediment 17.951083 -67.193167 170874585 429939 259 1 456 0 SRX3311540 Unrestricted 0.0 Metagenome 3300042442 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D263_2 DOE Joint Genome Institute (JGI) 3300042442 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 165538370 237330 121 8 175 11 Unrestricted 66.36 Metagenome 3300021398 *Microbiome Permanent Draft Wetland sediment microbial communities from Dorn Creek Dane County, Wisconsin, USA, enriched under anaerobic Fe-reducing conditions Wetland sediment microbial communities from Wisconsin, USA, enriched under anaerobic conditions and in the presence of Ferrihydrite-Humic Acid Coprecipitates - 3AB University of Wisconsin, Madison 3300021398 Metagenome Analysis SPAdes 3.10.0 released by JGI data releasing policy Yes Yes jmejia@wisc.edu Jacqueline Mejia No Environmental Aquatic Wetlands Freshwater Sediment Wetland Sediment 43.144933 -89.471218 2330362707 5259637 863 19 1428 40 0.0 Metagenome 3300042904 *Microbiome Permanent Draft Wetland soil microbial communities from various locations Soil microbial communities from agricultural land in Fort Collins, Colorado, USA - C_No_T20_B DOE Joint Genome Institute (JGI) 3300042904 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6529 -104.9995 1212247421 1956468 530 82 840 106 Unrestricted 16.36 Metagenome 3300007751 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Upa-Upasina ""control"", co14ic 200bp-25jan2016" University of New South Wales 3300007751 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au, n.webster@aims.gov.au; e.botte@aims.gov.au Nicole Webster, Nicole Webster; Emmanuelle BOTTE No Host-associated Porifera Unclassified Unclassified Unclassified C. singaporensis (marine sponge) -9.828217 150.820517 182683688 316054 74 8 112 15 0.0 Metagenome 3300001406 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 53-2 deep-072012 DOE Joint Genome Institute (JGI) 3300001406 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 39935176 108972 69 1 125 4 SRX1987653 Unrestricted 0.0 Metagenome 3300070755 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_004-M-20190620-COMP-DNA1 3300070755 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 138587 493 4 0 6 0 0.0 Metagenome 3300002532 *Microbiome Permanent Draft Deep subsurface and oceanic microbial communities from Witwatersrand Basin, South Africa, and the Canadian and Fennoscandian shields and at the Lost City Hydrothermal Field Deep oceanic, basalt-hosted subsurface ecosystem from Juan de Fuca Ridge flank, Pacific Ocean, CORK Borehole 1362B_J2.571 DOE Joint Genome Institute (JGI) 3300002532 Metagenome Analysis Yes Yes rstepanauskas@bigelow.org, rstepanauskas@bigelow.org; rappe@hawaii.edu Ramunas Stepanauskas, Ramunas Stepanauskas; Michael Rappe Yes 28270584, 28350381, 28396823, 29467397 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Deep oceanic, basalt-hosted subsurface hydrothermal fluid 47.76 -127.76 -2667 168044831 323415 199 13 359 14 SRX1888493, SRX753338 Unrestricted 0.0 Metagenome 3300031934 *Microbiome Permanent Draft Microbial communities from the deep biosphere Deep subsurface sediment microbial communities from Tonga Trench, Pacific Ocean - 3_6 re-assembly Marine Biological Laboratory 3300031934 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Sediment Geologic Unclassified Deep subsurface sediment -16.64175 -172.200017 38430278 129379 42 1 74 1 SRX2056172, SRX2056171 0.0 Metagenome 3300048440 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_130501.NP1 DOE Joint Genome Institute (JGI) 3300048440 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 735896193 1549404 445 76 637 135 Unrestricted 17.24 Metagenome 3300013760 *Microbiome Permanent Draft Terrestrial microbial communites from a soil warming plot in Okalahoma, USA Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C3.rep2 Georgia Institute of Technology 3300013760 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial 34.975667 -97.519 219944158 709165 122 10 364 10 SRX352028 0.0 Metagenome 3300013342 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01172 Weill Cornell Medical College 3300013342 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.68 -73.87 16558665 33811 9 0 25 0 SRX823127 0.0 Metagenome 3300007063 *Microbiome Permanent Draft Non-marine hypersaline water microbial communities from Salinas de A?ana, Spain Non-marine hypersaline water microbial communities from A?ana, Logro?o, Spain - Cell_A?ana_3 University of Alicante 3300007063 Metagenome Analysis IDBA 1.1.1 PRE correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline water 42.80111387 -2.985507 88045063 177281 104 6 156 12 0.0 Metagenome 3300005534 *Microbiome Permanent Draft Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 DOE Joint Genome Institute (JGI) 3300005534 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shadeash@msu.edu, shade.ashley@gmail.com Ashley Shade Yes 30397342 Environmental Terrestrial Unclassified Soil Unclassified Surface soil 40.7999 -76.3402 2259971937 6088632 1548 69 2681 133 SRX2837984 Unrestricted 0.0 Metagenome 3300044214 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Sangha River, Lobeke National Park, Cameroon - CONGO_017 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300044214 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 2.2232 16.1901 273949017 760295 270 13 349 19 Unrestricted 8.03 Metagenome 3300039307 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P19_D8 DOE Joint Genome Institute (JGI) 3300039307 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 698900004 990506 216 1 311 5 SRX9635386 Unrestricted 36.21 Metagenome 3300042600 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Euhamitermes sp. from Bubeng, China - Ehx436 Eurofins MWG Operon 3300042600 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 21.625956 101.586217 998619986 1005100 150 9 191 24 0.0 Metagenome 3300018485 *Microbiome Permanent Draft Bovine feces microbial communities from beef and dairy calves in Davis, CA, USA Bovine feces microbial communities from beef calf in Davis, CA, USA - DMJL001N re-assembly QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018485 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes jxnliu@ucdavis.edu Jinxin Liu No Host-associated Mammals Large intestine Digestive system Fecal feces 38.5449 -121.7405 94242918 159112 120 1 206 2 0.0 Metagenome 3300026554 *Microbiome Permanent Draft Anaerobic reactors microbiome study Activated sludge microbial communities from lab. scaled anaerobic digester in Belvaux, Luxembourg - ACS2-8 University of Luxembourg 3300026554 Metagenome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 49.506216 5.943617 322612968 389321 91 3 218 8 0.0 Metagenome 3300041567 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_148 MetaG AgResearch, New Zealand, Mosgeil 3300041567 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1417198247 2988420 286 60 1115 66 0.0 Metagenome 3300000650 *Microbiome Draft Forest soil microbial communities from Amazon Forest, Brazil Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A1 DOE Joint Genome Institute (JGI) 3300000650 Metagenome Analysis released based on JGI ITS Yes Yes jorge@uta.edu, jmrodrigues@ucdavis.edu Jorge Rodrigues, Jorge L. Rodrigues Yes 30083144 Environmental Terrestrial Tropical forest Soil Bulk soil Forest soil -10.171667 -62.7875 72355858 228780 453 25 805 48 Unrestricted 0.0 Metagenome 3300003769 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius geniculatus HERON ISLAND.2 DOE Joint Genome Institute (JGI) 3300003769 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 432423196 887797 19 3 26 4 SRX3340720 Unrestricted 0.0 Metagenome 3300007943 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 764325968 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007943 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 12691217 15260 11 2 26 11 SRX024117, SRX098537 0.0 Metagenome 3300036561 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C4-1B DOE Joint Genome Institute (JGI) 3300036561 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 73834833 242912 198 6 380 16 SRX8786726 Unrestricted 4.17 Metagenome 3300020692 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 10SEP2007 hypolimnion DOE Joint Genome Institute (JGI) 3300020692 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 61011128 138330 78 3 122 4 Unrestricted 0.0 Metagenome 3300047653 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BT11-05_D100 (version 2) DOE Joint Genome Institute (JGI) 3300047653 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3555 19.0492 185122857 301709 116 21 168 33 Restricted 0.0 Metagenome 3300035018 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Timaviella obliquedivisa GSE-PSE-MK23-08B and co-occurring heterotrophs from rock surface from Grand Staircase Escalante National Monument, Utah, United States - 20181204_58 DOE Joint Genome Institute (JGI) 3300035018 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Rock surface 37.7168 -111.4712 58085264 64455 17 3 15 2 SRX8239127 Unrestricted 220.02 Metagenome 3300022494 *Microbiome Permanent Draft Human saliva microbial communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva microbial communities from oral cavities of IgA immunodeficiency people from Alicante, Spain - individual 9 Autonomous University of Barcelona 3300022494 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.38 -0.51 57308440 68268 46 0 58 0 0.0 Metagenome 3300001545 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 DOE Joint Genome Institute (JGI) 3300001545 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 309631441 845060 467 70 813 115 SRX1987173 Unrestricted 0.0 Metagenome 3300003787 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003787 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 56418306 131788 64 17 78 30 SRX2518392 Unrestricted 0.0 Metagenome 3300014128 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Venezuela to Iowa, USA - V11 Iowa State University 3300014128 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 12112885 24921 0 2 0 0 SRX1150306 0.0 Metagenome 3300005450 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_02_30cm DOE Joint Genome Institute (JGI) 3300005450 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2361821968 6465962 2080 43 3521 96 SRX2727710 Unrestricted 0.0 Metagenome 3300025492 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA -CR12Jun_QV11 (SPAdes) DOE Joint Genome Institute (JGI) 3300025492 Metagenome Analysis spades v. 3.11.1 Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 22355824 30121 19 0 21 2 SRX3321592 Unrestricted 0.0 Metagenome 3300055537 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.17W.13 SIP fraction DOE Joint Genome Institute (JGI) 3300055537 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 102118168 212091 80 51 139 72 Unrestricted 10.31 Metagenome 3300032290 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains Ecozone, Canada - Lake 08-160 Genome Quebec 3300032290 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.471825 -77.294838 789158222 1681602 456 64 809 143 0.0 Metagenome 3300001138 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Kansas, USA that are Nitrogen fertilized - NN591 DOE Joint Genome Institute (JGI) 3300001138 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.070856 -96.582821 1272570 4325 27 0 42 1 SRX3311854 Unrestricted 0.0 Metagenome 3300049754 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MB36 DOE Joint Genome Institute (JGI) 3300049754 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 313756402 852283 561 13 1099 28 Unrestricted 8.16 Metagenome 2199352033 *Microbiome Permanent Draft Speleothem and rock wall surfaces microbial communities from Kartchner Caverns, Benson, Arizona, USA Cave microbial community (Wet rock wall) Arizona Genomics Institute 2199352033 Metagenome Analysis Newbler released per JGI data release policy No Yes moo@email.arizona.edu Marian Ortiz No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Speleothem and rock wall surfaces 39.0042816 -77.1012173 138876357 384714 143 0 232 0 0.0 Metagenome 3300040060 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 054B_R1 University of Maryland 3300040060 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.98543056 25.64503889 13098836 32770 44 3 52 8 0.0 Metagenome 3300012822 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - DID2934_E24_Lignin MG DOE Joint Genome Institute (JGI) 3300012822 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie Yes 29545786 Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 67969669 112711 99 1 155 1 SRX3564784 Unrestricted 0.0 Metagenome 3300049321 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CAF1 DOE Joint Genome Institute (JGI) 3300049321 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 224987278 618408 344 14 633 31 Unrestricted 6.55 Metagenome 3300035065 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - T7-14 Autonomous University of Barcelona 3300035065 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 40340735 160421 303 1 647 1 0.0 Metagenome 3300038645 *Microbiome Permanent Draft Freshwater sediment microbial communities from Chandeleur Islands, USA Vegetated sediment core microbial communities from Chandeleur Islands, USA - SVegC3 University of Alabama 3300038645 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Wetlands Freshwater Sediment Vegetated sediment core 29.862806 -88.841194 9016958 25854 41 0 51 0 0.0 Metagenome 3300011752 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01050 Weill Cornell Medical College 3300011752 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.67 -73.93 27423347 39503 7 0 22 0 SRX823012 0.0 Metagenome 3300005261 *Microbiome Permanent Draft Freshwater pond sediment microbial communities from Middleton WI, enriched by Humic Acid and/or Glucose under anaerobic conditions Freshwater pond sediment microbial communities from Midddleton WI, HA 3/4 enriched by Glucose under anaerobic conditions -HA Sample 2 University of Wisconsin, Madison 3300005261 Metagenome Analysis CLC Genomic Workbench released per JGI data release policy Yes Yes nstern2@wisc.edu Noah Stern No Environmental Aquatic Sediment Freshwater Unclassified Anaerobic Enrichment Culture 43.0603 -89.5717 171093054 306817 96 0 169 0 0.0 Metagenome 3300043437 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06Aug2004-rr0316 DOE Joint Genome Institute (JGI) 3300043437 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 990765117 1436941 375 37 489 49 Unrestricted 20.66 Metagenome 3300013344 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01182 Weill Cornell Medical College 3300013344 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.69 -73.83 20846086 38126 24 0 29 0 SRX823137 0.0 Metagenome 3300035546 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B3.2_Sample3.Rodeo2.Well667 DOE Joint Genome Institute (JGI) 3300035546 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 82893933 139195 91 0 156 0 SRX8353090 Unrestricted 118.41 Metagenome 3300044212 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_USB_197 DOE Joint Genome Institute (JGI) 3300044212 Metagenome Analysis metaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 74220476 74020 68 0 67 0 SRX12729151, SRX12729150 Unrestricted 0.0 Metagenome 3300024949 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 67_HOW9 (SPAdes) DOE Joint Genome Institute (JGI) 3300024949 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 77429974 118669 44 2 60 3 SRX2720763 Unrestricted 0.0 Metagenome 3300005532 *Microbiome Permanent Draft Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 DOE Joint Genome Institute (JGI) 3300005532 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shadeash@msu.edu, shade.ashley@gmail.com Ashley Shade Yes 30397342 Environmental Terrestrial Unclassified Soil Unclassified Surface soil 40.7999 -76.3402 1414525521 3149273 1179 31 1840 40 SRX2837996 Unrestricted 0.0 Metagenome 3300044778 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - Rondonia_Forest_3_A100m DOE Joint Genome Institute (JGI) 3300044778 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.142 -62.882 389897956 1090794 312 1 575 4 Unrestricted 7.8 Metagenome 3300001317 *Microbiome Permanent Draft Bioengineered switchgrass rhizosphere microbial community from Knoxville, Tennessee, USA Bioengineered switchgrass rhizosphere microbial community from Knoxville, Tennessee, USA - 15-1 3300001317 Metagenome Analysis released by JGI data releasing policy No Yes jliu36@utk.edu Jiang Liu No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 35.98 -83.92 5914553 19760 5 3 23 3 0.0 Metagenome 3300001946 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from North James Bay, Santigo Island, Equador J. Craig Venter Institute (JCVI) 3300001946 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine -0.2 -90.83528 66821013 121471 66 0 109 0 0.0 Metagenome 3300056798 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - APS1_2W_TP2_16O DOE Joint Genome Institute (JGI) 3300056798 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 2080487637 2808935 693 122 869 162 Unrestricted 21.93 Metagenome 3300048900 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Soil microbial communities from greenhouse in W.K. Kellogg Biological Station, Michigan, USA - KLW soil_5b N15 DOE Joint Genome Institute (JGI) 3300048900 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Environmental Terrestrial Unclassified Soil Unclassified Soil 42.40581 -85.40228 2176596517 3721576 730 31 1255 54 Unrestricted 14.82 Metagenome 3300002534 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Coal-degrading lab enrichment microbial communities from Bowden, Alberta, Canada - methanogenic culture: QSAFCN2 McGill University 3300002534 Metagenome Analysis released per JGI data release policy No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Lab enrichment Anaerobic media Defined media Unclassified Hydrocarbon resource environments 51.9740275 -113.8051889 42978460 56882 11 0 26 0 0.0 Metagenome 3300031932 *Microbiome Permanent Draft Microbial communities from the deep biosphere Deep subsurface microbial communities from shale gas basins in Pennsylvania, USA - 3_Day13.3 re-assembly Marine Biological Laboratory 3300031932 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Unclassified Deep subsurface Unclassified Deep subsurface 39.898 -79.976 19511551 37382 9 0 17 0 0.0 Metagenome 3300013203 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100527 University of Pennsylvania 3300013203 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 22155271 33611 4 6 16 9 SRX756227 0.0 Metagenome 3300026552 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_12_20cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026552 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 1634367529 2903625 1017 36 1667 50 SRX2727525 Unrestricted 0.0 Metagenome 3300020694 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 09SEP2008 epilimnion DOE Joint Genome Institute (JGI) 3300020694 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 68820017 143340 76 14 84 19 Unrestricted 0.0 Metagenome 3300045600 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_USB_056 DOE Joint Genome Institute (JGI) 3300045600 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 234136475 366870 246 4 331 4 SRX12656290 Unrestricted 51.91 Metagenome 3300013923 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01112 Weill Cornell Medical College 3300013923 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.9 22169604 29162 10 0 13 0 SRX823067 0.0 Metagenome 3300043758 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Para, Brazil - P22 DOE Joint Genome Institute (JGI) 3300043758 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -3.3134 -54.9096 757374433 1769324 404 7 729 12 Unrestricted 7.53 Metagenome 3300027071 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027071 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 129329116 340585 140 14 274 23 SRX3311910 Unrestricted 0.0 Metagenome 3300001066 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized -NN626 DOE Joint Genome Institute (JGI) 3300001066 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 124462 441 14 0 20 0 SRX1987008 Unrestricted 0.0 Metagenome 3300032018 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_middle DOE Joint Genome Institute (JGI) 3300032018 Metagenome Analysis spades v. 3.12.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5107 -110.3566 1580435620 3972564 1653 61 2787 110 SRX6379484 Unrestricted 10.89 Metagenome 3300006246 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159005010 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006246 Metagenome Analysis SPADES v3.6.1 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 20668113 54785 27 0 59 1 0.0 Metagenome 3300025494 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 210-2 shallow-072012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025494 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 212067953 515934 194 40 318 60 SRX1987457 Unrestricted 0.0 Metagenome 3300059788 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1546C-3 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059788 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2311 -123.8825 82422824 188385 146 51 239 56 SRX2753622 Unrestricted 0.0 Metagenome 3300025273 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025273 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 371181494 580404 142 4 157 8 SRX2770673 Unrestricted 0.0 Metagenome 3300002450 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Cornitermes sp. P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Co191 P3 DOE Joint Genome Institute (JGI) 3300002450 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes karen.rossmassler@gmail.com, brune@mpi-marburg.mpg.de Karen Rossmassler, Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 5.0626 -53.0462 1316108521 2989234 669 17 1319 36 SRX3327592 Unrestricted 0.0 Metagenome 3300022492 *Microbiome Permanent Draft Acid mine drainage microbial communities from Malanjkhand copper mine, India Acid mine drainage microbial communities from Malanjkhand copper mine, India - M8_II Kmer_63 Indian Institute of Technology, kharagpur 3300022492 Metagenome Analysis metavelvet v. 1.2.02 released by JGI data releasing policy No Yes sarpinaki@yahoo.com Pinaki Sar No Environmental Terrestrial Unclassified Soil Mine drainage sediment 21.9987 80.697667 122166089 434616 328 40 543 52 0.0 Metagenome 3300023096 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L163-409C-2 DOE Joint Genome Institute (JGI) 3300023096 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 645535207 1371674 492 116 792 165 SRX4797608 Unrestricted 11.11 Metagenome 3300011754 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01113 Weill Cornell Medical College 3300011754 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.66 -73.9 27196883 42727 13 0 23 0 SRX823068 0.0 Metagenome 3300032065 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20 DOE Joint Genome Institute (JGI) 3300032065 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1355074120 3333182 388 2 634 3 SRX5817812 Unrestricted 12.55 Metagenome 3300012459 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100336 University of Pennsylvania 3300012459 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14138622 27108 21 0 35 0 SRX756321 0.0 Metagenome 3300002261 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP19-MA 3300002261 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300030419 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_034 - TARA_R100000008 CEA Genoscope 3300030419 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 18.4417 39.8567 272794497 560605 8 0 8 3 0.0 Metagenome 3300049752 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MB21 DOE Joint Genome Institute (JGI) 3300049752 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 354329245 917144 613 9 1169 11 Unrestricted 8.52 Metagenome 3300012824 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched pill bug-associated microbial communities from UW Madison campus, WI, USA - HID1972M_E11 MG DOE Joint Genome Institute (JGI) 3300012824 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 84891590 113113 71 1 132 2 SRX3564675 Unrestricted 0.0 Metagenome 3300028205 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Site 231 with 3.0UM filter - spades J. Craig Venter Institute 3300028205 Metagenome Analysis Spades v. 3.11.1 Released per Simon Roux. Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater -68.4 78.18278 8.81 22138314 39645 10 3 14 1 0.0 Metagenome 3300025625 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025625 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 327706844 729081 199 38 340 49 SRX1987654 Unrestricted 0.0 Metagenome 3300027156 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepA_8h DOE Joint Genome Institute (JGI) 3300027156 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 176449014 348952 132 14 202 16 SRX5245181 Unrestricted 17.07 Metagenome 3300043565 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains ecozone, Canada - Lake 08-209 Genome Quebec 3300043565 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.216979 -81.55796 1265617139 2821077 680 203 1105 391 0.0 Metagenome 3300004280 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_100m DOE Joint Genome Institute (JGI) 3300004280 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 811760889 1930260 688 37 1102 78 Unrestricted 0.0 Metagenome 3300034028 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 46SNC DOE Joint Genome Institute (JGI) 3300034028 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological biocrust 34.7856 -115.66 253603984 554496 434 17 735 19 SRX7621467 Unrestricted 8.5 Metagenome 3300038473 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-2-M (v2) (version 2) DOE Joint Genome Institute (JGI) 3300038473 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 659101372 1466228 490 17 837 17 SRX8137904, SRX8137903 Unrestricted 0.0 Metagenome 3300040642 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_047-M-20160822-COMP-DNA1 Battelle Memorial Institute 3300040642 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 2310558 7197 30 6 56 8 0.0 Metagenome 3300043359 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 236-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043359 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9607 -107.0296 532663986 1611800 650 53 1275 87 Unrestricted 6.64 Metagenome 3300008452 *Microbiome Permanent Draft Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Sept 29, 2014 virsorter University of Michigan 3300008452 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes duhaimem@umich.edu Melissa Duhaime No Environmental Aquatic Lake Freshwater Unclassified freshwater lake 41.7032 -83.2575 8.738 113775317 193993 0 0 0 0 0.0 Metagenome 3300028925 *Microbiome Finished Marine viral communities from South Scotia Ridge, Antarctic Ocean Marine viral communities from South Scotia Ridge, Antarctic Ocean - SST-3 Beijing Novogene Bioinformatics Technology Co., Ltd 3300028925 Metagenome Analysis idba v. 1.1.2 released by JGI data releasing policy Yes Yes foodyqw_12@163.com Yang Qingwei No Environmental Aquatic Oceanic Marine Unclassified marine -61.32 -54.12 446877763 787194 98 49 128 80 0.0 Metagenome 3300047361 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_170118.NP2 DOE Joint Genome Institute (JGI) 3300047361 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 679424861 1418286 460 74 688 122 Unrestricted 11.76 Metagenome 3300028490 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in the Atlantic and Pacific Ocean Hydrothermal vent microbial communities from East Pacific Rise, Pacific Ocean - CV67 DOE Joint Genome Institute (JGI) 3300028490 Metagenome Analysis spades v. 3.11.1 Yes Yes pgirguis@oeb.harvard.edu Peter Girguis No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent 9.8597 -104.2997 611481128 1337530 479 28 714 41 SRX5246453 Unrestricted 17.71 Metagenome 3300015165 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G3A, Proglacial river margin, by glacier terminus) University of Bristol 3300015165 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.152116 -50.048697 6.42 186606224 398443 133 4 233 7 0.0 Metagenome 3300026712 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A1w-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026712 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 16523797 54685 81 2 166 10 SRX1991153 Unrestricted 0.0 Metagenome 3300014289 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 180_L2_2014-5-14 San Diego State University 3300014289 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 26855514 60731 11 11 29 30 0.0 Metagenome 3300014814 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocyanate-only bioreactor Banfield Lab, University of California, Berkeley 3300014814 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes supratimmukherjee@lbl.gov Supratim Mukherjee Yes 28139919 Engineered Bioremediation Unclassified Thiocyanate Unclassified Wastewater bioreactor -33.96 18.46 193900343 346573 66 7 115 10 SRX981445 0.0 Metagenome 3300026278 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant BLVA 2012 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026278 Metagenome Analysis spades v. 3.11.1 Yes Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic microbial mat 44.534 -110.7978 298821982 500915 178 3 248 1 SRX2554544 Unrestricted 0.0 Metagenome 3300043518 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime ecozone, Canada - Lake 07-250 Genome Quebec 3300043518 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.132703 -61.185324 1050883375 2244818 429 114 676 231 0.0 Metagenome 3300042222 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D174_1 DOE Joint Genome Institute (JGI) 3300042222 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 147926408 198189 84 8 118 17 Unrestricted 79.83 Metagenome 3300024191 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 45D DOE Joint Genome Institute (JGI) 3300024191 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 263573233 564100 193 34 302 54 SRX4465390 Unrestricted 15.82 Metagenome 3300014267 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D1 DOE Joint Genome Institute (JGI) 3300014267 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.052479 -121.7687 349172545 800431 401 1 689 5 SRX7181927 Unrestricted 0.0 Metagenome 3300070347 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Colorado, USA - CPER_001-M-20210630-COMP-DNA1 3300070347 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 1268392529 3343864 894 32 1912 49 0.0 Metagenome 3300070916 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Alaska, USA - DEJU_014-O-20180618-COMP-DNA1 3300070916 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 41688877 122602 130 52 252 91 0.0 Metagenome 3300045224 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_5_A DOE Joint Genome Institute (JGI) 3300045224 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 153264705 183544 99 1 117 1 Unrestricted 113.63 Metagenome 3300027707 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027707 Metagenome Analysis spades v. 3.11.1 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 631353270 1268143 244 53 360 72 SRX2565076 Unrestricted 0.0 Metagenome 3300050019 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 P2 30-34 DOE Joint Genome Institute (JGI) 3300050019 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3535 19.0472 719671076 1044094 207 1 295 3 Restricted 16.61 Metagenome 3300011514 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00757 Weill Cornell Medical College 3300011514 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.95 7832451 13493 9 0 19 0 SRX822723 0.0 Metagenome 3300020425 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100001765 (ERX556083-ERR598964) CEA Genoscope 3300020425 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 34.155 -49.6942 1087341395 2867894 674 65 1390 121 0.0 Metagenome 3300000952 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN346 DOE Joint Genome Institute (JGI) 3300000952 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 58817 189 15 1 19 1 SRX3311793 Unrestricted 0.0 Metagenome 3300021978 *Microbiome Permanent Draft Characterization of microbial community from Mariana Back Arc Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Perseverance_CTD_V16A_01_btl17 _150kmer Marine Biological Laboratory 3300021978 Metagenome Analysis IDBA-UD 1.1.3 Trembath-Reichert et al. ?Active subseafloor microbial communities from Mariana back-arc venting fluids share metabolic strategies across different thermal niches and taxa?, ISMEJ 2019 No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluids 15.47990499 144.50763029 556025724 1098648 365 33 495 64 0.0 Metagenome 3300042444 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06Jul2010-rd0096 DOE Joint Genome Institute (JGI) 3300042444 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 608558470 900929 255 89 330 130 Unrestricted 20.61 Metagenome 3300012337 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100586 University of Pennsylvania 3300012337 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 22597517 48927 33 10 61 24 SRX756168 0.0 Metagenome 3300001785 *Microbiome Permanent Draft Biogas reactor microbial communities from the Max Planck Institute, Germany BioPara_130709_S4 3300001785 Metagenome Analysis released by JGI data releasing policy No Yes sneulinger@ifam.uni-kiel.de Sven Neulinger, Sven C. Neulinger No Engineered Solid waste Composting Grass Bioreactor Biogas reactor 129259412 515244 147 3 501 1 0.0 Metagenome 3300042902 *Microbiome Permanent Draft Sediment microbial communities from various environments and locations in Europe Sediment microbial communities from Baltic Sea, Sweden - H2D5S (IMG v5.0) DOE Joint Genome Institute (JGI) 3300042902 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes o.eyice@qmul.ac.uk Ozge Eyice No Environmental Aquatic Sediment Marine Unclassified Sediment 58.9344 17.7391 906341415 1973470 648 8 1072 13 Unrestricted 10.62 Metagenome 3300041749 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_400 MetaG AgResearch, New Zealand, Mosgeil 3300041749 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1832307063 3516993 343 19 1253 39 0.0 Metagenome 3300045904 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Geyser Creek, Yellowstone National Park, WY, United States - MSUNE_GC_10 University of Wisconsin, Madison 3300045904 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.69038 -110.7289 225086859 343559 159 3 227 0 0.0 Metagenome 3300045442 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-650 Genome Quebec 3300045442 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.070025 -123.811737 1089668595 2370303 534 158 791 243 0.0 Metagenome 3300000193 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 135m DOE Joint Genome Institute (JGI) 3300000193 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 181431103 351631 122 4 245 0 Unrestricted 0.0 Metagenome 3300035432 *Microbiome Permanent Draft Bioreactor microbial communities from dechlorination culture samples - Genome Institute of Singapore Bioreactor microbial communities from dechlorination culture samples - Genome Institute of Singapore - CG5-PCB Genome Institute of Singapore 3300035432 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Bioreactor Unclassified Unclassified Unclassified Bioreactor 68690408 90724 42 0 53 0 SRX392470 0.0 Metagenome 3300006001 *Microbiome Permanent Draft Earthworm egg capsule microbial community from the University of Washington, USA Earthworm egg capsule microbial community from the University of Washington, USA - E. fetida Yelm (SPADES assembly) (version 2) DOE Joint Genome Institute (JGI) 3300006001 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, skdavid@u.washington.edu Natasha Ivanova, Seana Davidson No Host-associated Annelida Egg capsule Reproductive system Unclassified Earthworm egg capsule 47.0 -122.0 753910221 1699602 149 21 235 43 SRX3327284 Unrestricted 0.0 Metagenome 3300049685 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G12_B_3_control DOE Joint Genome Institute (JGI) 3300049685 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 82298467 195215 221 12 488 22 Unrestricted 11.03 Metagenome 7000000371 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159814214 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000371 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 160670242 312123 0 0 0 0 0.0 Metagenome 3300026294 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026294 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Soil 68.6135 -149.3144 611107798 1369135 357 19 524 44 SRX2739468 Unrestricted 0.0 Metagenome 3300005446 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_05_40cm DOE Joint Genome Institute (JGI) 3300005446 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2565146135 6907243 2102 16 3778 43 SRX2727805 Unrestricted 0.0 Metagenome 3300070890 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone National Park, Wyoming, USA - YELL_052-M-20200709-COMP-DNA1 Battelle Memorial Institute 3300070890 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 44.954799 -110.539286 6.15-6.24 8682636 27809 88 13 168 20 0.0 Metagenome 3300039162 *Microbiome Permanent Draft Freshwater microbial communities from various watersheds in Southwestern British Columbia, Canada Freshwater microbial communities from Southwestern British Columbia, Canada - MOCK_4 University of British Columbia 3300039162 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 49.0 -123.0 36146661 60329 21 0 19 0 0.0 Metagenome 3300026473 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_8d DOE Joint Genome Institute (JGI) 3300026473 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 208753672 443056 193 9 280 10 SRX4547348 Unrestricted 12.94 Metagenome 3300009649 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-059 DOE Joint Genome Institute (JGI) 3300009649 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Permafrost soil 68.6137 -149.3144 451544530 930825 566 4 995 12 SRX2755583 Unrestricted 0.0 Metagenome 3300013801 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS879 IDBA reassembly Marine Biological Laboratory 3300013801 Metagenome Analysis reassembly with IDBA-UD released by JGI data releasing policy No Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow diffuse flow hydrothermal vent 18.375 -81.797 6.91 148876027 313501 171 4 263 8 0.0 Metagenome 3300002906 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm DOE Joint Genome Institute (JGI) 3300002906 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 417393970 927908 403 29 706 49 SRX2564901 Unrestricted 0.0 Metagenome 3300038712 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample26 King Abdulaziz City for Science and Technology (KACST) 3300038712 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 22.2 37.55 34651545 89647 60 0 99 0 SRX1097593 0.0 Metagenome 3300036925 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8CP15 DOE Joint Genome Institute (JGI) 3300036925 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 1105591220 2458788 782 23 1323 33 SRX8379539 Unrestricted 7.44 Metagenome 3300037503 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Soil microbial communities from Mojave Desert, California, United States - 2NOC DOE Joint Genome Institute (JGI) 3300037503 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Desert Soil Unclassified soil 34.7856 -115.66 320934178 768536 453 18 886 23 SRX9139744 Unrestricted 11.35 Metagenome 3300003964 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Enrichment cultures from Harmful Algal Blooms in Lake Erie, HABS-00-39864 University of Michigan 3300003964 Metagenome Analysis IDBA-UD v1.1.1 released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lentic Freshwater Unclassified Freshwater -77.611214 163.119356 45514801 48795 42 0 53 0 0.0 Metagenome 3300002226 *Microbiome Permanent Draft Marine microbial communities from the Baltic Sea examining degradability of arctic, terrigenous carbon compounds in the sea Marine microbial communities from the Baltic Sea - M1t6 FKB2 (106N) Karolinska Institutet 3300002226 Metagenome Analysis released per JGI data release policy No Yes daniel.herlemann@io-warnemuende.de, daniel.herlemann@emu.ee Daniel Herlemann, Daniel P. Herlemann No Environmental Aquatic Oceanic Marine Unclassified Marine 58.133 10.0 203164960 915115 188 30 417 55 0.0 Metagenome 3300020816 *Microbiome Permanent Draft Metagenomes from anaerobic digester of solid waste Food waste microbial community from Durham, Ontario, Canada - FW1 megahit University of Toronto 3300020816 Metagenome Analysis Megahit v1.1.1 Yes Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Engineered Solid waste Unclassified Food waste Unclassified food waste 44.1763 -80.8185 1285684727 2097104 391 209 651 270 SRX4986161, SRX4965146 0.0 Metagenome 3300014031 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A35_80cm_0.25M University of Tennessee 3300014031 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 133394989 345880 67 4 144 5 SRX710577 0.0 Metagenome 3300029819 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P103V6 Beijing Genomics Institute (BGI) 3300029819 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 145678258 164508 103 0 149 0 0.0 Metagenome 3300042308 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2009-rr0433 DOE Joint Genome Institute (JGI) 3300042308 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1119056398 1760168 373 175 474 216 Unrestricted 22.21 Metagenome 3300031905 *Microbiome Permanent Draft Microbial communities from the deep biosphere Oceanic crust microbial communities from Louisville Seamount Chain, Pacific Ocean - 1376-17R re-assembly The Marine Biological Laboratory 3300031905 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Deep subsurface Marine Rock Oceanic crust -28.596 -173.28 21084736 58073 37 13 81 26 SRX869327, SRX834480 0.0 Metagenome 3300021372 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01 DOE Joint Genome Institute (JGI) 3300021372 Metagenome Analysis spades v. 3.11.1-check Yes Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Environmental Terrestrial Grasslands Soil Bulk soil bulk soil -19.28 -43.5919 860065816 2305928 711 32 1366 77 SRX4020416 Unrestricted 7.68 Metagenome 3300025871 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC045_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025871 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.12 -87.63 765067698 1449035 610 0 845 4 SRX2338867 Unrestricted 0.0 Metagenome 3300000358 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM191 Beijing Genomics Institute (BGI), Macrogen 3300000358 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 50009583 55740 129 0 183 0 0.0 Metagenome 3300033168 *Microbiome Permanent Draft Rock endolithic microbial communities from Victoria Land, Antarctica Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud DOE Joint Genome Institute (JGI) 3300033168 Metagenome Analysis spades v. 3.13.0 Yes Yes selbmann@unitus.it Laura Selbmann Yes 32139564 Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock -74.2 162.5 815181203 1348065 168 37 211 51 SRX7111903 Unrestricted 49.08 Metagenome 3300046695 *Microbiome Permanent Draft Soil microbial communities from Blodgett Forest Research Station, California, USA Soil microbial communities from Blodgett Forest Research Station, California, USA - BWE201406032H1020 DOE Joint Genome Institute (JGI) 3300046695 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.9122 -120.6612 197590397 366004 252 39 501 57 Unrestricted 18.81 Metagenome 3300070684 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_004-O-20200914-COMP-DNA1 3300070684 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 34232894 97946 35 23 66 39 0.0 Metagenome 3300000646 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion DOE Joint Genome Institute (JGI) 3300000646 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300000519 *Microbiome Draft Soil microbial communities from Kansas Great Prairie, USA, amended with BrdU Amended soil microbial communities from Kansas Great Prairies, USA - acetate and BrdU F2.1B DOE Joint Genome Institute (JGI) 3300000519 Metagenome Analysis released based on JGI ITS Yes Yes maude.david@yahoo.fr, janet.jansson@pnnl.gov Maude David, Janet Jansson No Environmental Terrestrial Loam Soil Grasslands Soil 39.100992 -96.608258 71016757 182892 11 7 32 15 Unrestricted 0.0 Metagenome 3300001021 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1111 DOE Joint Genome Institute (JGI) 3300001021 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 386943 1246 14 0 23 0 SRX3311886 Unrestricted 0.0 Metagenome 3300047190 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2019 IH01_7cm DOE Joint Genome Institute (JGI) 3300047190 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.358 19.047 228162079 395738 128 2 302 5 Restricted 26.98 Metagenome 3300031225 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #175 DOE Joint Genome Institute (JGI) 3300031225 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 483703151 808872 119 35 149 71 SRX5649431 Unrestricted 29.28 Metagenome 3300007208 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763901136 replicate 1 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007208 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 139702198 183410 103 1 123 0 0.0 Metagenome 3300069222 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Santa Rita Experimental Range, Tucson, Arizona, USA - SRER_006-M-20210809-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069222 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Desert Soil Unclassified Terrestrial soil 31.795656 -110.910239 2012792806 4783572 1409 23 2937 33 0.0 Metagenome 3300001652 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF040 DOE Joint Genome Institute (JGI) 3300001652 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 10459433 32077 36 3 55 7 SRX2014398 Unrestricted 0.0 Metagenome 3300020678 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 22JUL2008 epilimnion DOE Joint Genome Institute (JGI) 3300020678 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 599169 1581 4 1 5 2 Unrestricted 0.0 Metagenome 3300020333 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000959 (ERX556081-ERR598953) CEA Genoscope 3300020333 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -12.9057 -96.155 343996224 744559 253 6 391 12 0.0 Metagenome 3300043050 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5ST15 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043050 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 16065486 38828 57 3 94 7 SRX8379494 Unrestricted 25.65 Metagenome 3300042935 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16May2016-rr0357 DOE Joint Genome Institute (JGI) 3300042935 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1128137846 1520326 187 37 265 49 Unrestricted 21.63 Metagenome 3300070980 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_002-O-20200706-COMP-DNA1 3300070980 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 39839615 116951 90 30 177 62 0.0 Metagenome 3300014696 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS44_18 University of Hohenheim 3300014696 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 54864383 78219 42 0 69 1 0.0 Metagenome 3300069444 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_004-M-20170705-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069444 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 104642945 311681 173 13 329 15 0.0 Metagenome 3300007928 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 763982056 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007928 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 3505352 6640 7 0 11 0 SRX024186 0.0 Metagenome 3300056774 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FL_03 DOE Joint Genome Institute (JGI) 3300056774 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.407926 -82.180036 65056584 107000 11 3 11 6 Restricted 499.05 Metagenome 3300044794 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - 1SFNV_THU_A50 DOE Joint Genome Institute (JGI) 3300044794 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.2465 -62.8456 468254186 1384152 362 1 742 1 Unrestricted 7.49 Metagenome 3300038552 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Sediment microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_West_3 DOE Joint Genome Institute (JGI) 3300038552 Metagenome Analysis metaspades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Wetlands Marine Sediment sediment 26.469 -80.4434 3396018802 5278061 1084 8 1735 12 SRX9405893 Unrestricted 13.71 Metagenome 3300031673 *Microbiome Permanent Draft Soil microbial communities from Risofladan, Vaasa, Finland Soil microbial communities from Risofladan, Vaasa, Finland - TR-3 DOE Joint Genome Institute (JGI) 3300031673 Metagenome Analysis spades v. 3.12.0 Yes Yes eva.hogfors-ronnholm@novia.fi Eva Hogfors-Ronnholm Yes Environmental Terrestrial Coastal area Soil Acid sulfate soil soil 63.0472 21.7116 2204536785 5010439 572 14 789 23 SRX5356282 Unrestricted 18.87 Metagenome 3300065514 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 769 in Veteran, Alberta, Canada - S00JY_0112 Microbiome Insights 3300065514 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.01390508 -111.1006914 12012315 18512 23 1 35 1 0.0 Metagenome 3300013408 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100185 University of Pennsylvania 3300013408 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4807715 9538 15 2 18 8 SRX756348 0.0 Metagenome 3300026919 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T3_23-Sept-14 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026919 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 57622659 163993 135 30 238 43 SRX2838891 Unrestricted 0.0 Metagenome 3300013687 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100318 University of Pennsylvania 3300013687 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14914361 24937 23 1 28 2 SRX756339 0.0 Metagenome 3300037124 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0606U12re DOE Joint Genome Institute (JGI) 3300037124 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8973 -97.0409 347084612 561016 216 5 341 7 SRX8670220 Unrestricted 13.65 Metagenome 2065487003 *Microbiome Permanent Draft Human fecal microbial communities from Baylor College of Medicine, Texas, USA, mock community Human fecal microbial communities from Baylor College of Medicine, Texas, USA, mock community - Mock Staggered Illumina SOAP Baylor College of Medicine 2065487003 Metagenome Analysis released per JGI data release policy No Yes xqin@bcm.tmc.edu Xiang Qin No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 29.7 -95.38 38338343 90576 34 0 86 0 0.0 Metagenome 3300014143 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Thailand to Iowa, USA - T7 Iowa State University 3300014143 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 3105291 5847 0 3 0 0 SRX1150303 0.0 Metagenome 3300041062 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - T5D8 IDBA-UD 100x Baseclear 3300041062 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 92368516 126694 153 5 224 7 0.0 Metagenome 3300039825 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_034-O-20170731-COMP-DNA1 Battelle Memorial Institute 3300039825 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 29657261 84485 75 12 116 20 0.0 Metagenome 3300061118 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIIF2SW no PMA treatment Jet Propulsion Laboratory, California Institute of Technology 3300061118 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 20131647 49565 12 9 14 11 SRX3808511, SRX3244870, SRX3244859, SRX3808504 0.0 Metagenome 3300013136 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo - kab_022012_11.5m DOE Joint Genome Institute (JGI) 3300013136 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -1.64 29.05 1417963875 2496408 1289 23 1941 37 SRX7700132 Unrestricted 23.97 Metagenome 3300009107 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 295m, 2.7-0.2um, replicate b Georgia Genomics Facility 3300009107 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 204216385 269456 97 0 133 0 0.0 Metagenome 3300013669 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01031 Weill Cornell Medical College 3300013669 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.67 -73.85 14006969 21619 13 0 13 0 SRX822993 0.0 Metagenome 3300050310 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_73 DOE Joint Genome Institute (JGI) 3300050310 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.598 161.007 333938316 518754 15 20 23 25 SRX18235923 Restricted 44.29 Metagenome 3300041942 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from the Rocky Mountain Biological Laboratory (RMBL), Gothic, Colorado, United States - 2009WM_4W DOE Joint Genome Institute (JGI) 3300041942 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9595 -106.99 107254362 332290 219 6 386 18 SRX14812264 Unrestricted 6.73 Metagenome 3300021219 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge Stylissa sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - st20is 200bp-microeukaryotes University of New South Wales 3300021219 Metagenome Analysis IDBA-UD released by JGI data releasing policy Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Stylissa sp. (marine sponge) -9.40556 150.816667 831580 1449 0 0 0 0 0.0 Metagenome 3300047326 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Frasne, France - Sphagnum magellanicum 1C_MAG_FR DOE Joint Genome Institute (JGI) 3300047326 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 1502616265 2706873 503 130 886 200 SRX14794118 Unrestricted 8.16 Metagenome 3300041404 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 DOE Joint Genome Institute (JGI) 3300041404 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.8942 -103.685 600399107 1474441 607 46 1052 83 SRX14827102 Unrestricted 7.65 Metagenome 3300017651 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - eDNA 5th pass 37_C BE-Lig MG (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017651 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes JMGladden@lbl.gov John Gladden No Engineered Solid waste Composting Mixed feedstock Commercial compost compost 37.83 -122.29 683463723 1079592 1100 36 1454 44 SRX4809027, SRX4809026 Unrestricted 0.0 Metagenome 2209111005 *Microbiome Permanent Draft Delisea pulchra's surface microbial communities from Botany Bay, Sydney, Australia Delisea pulchra's surface microbial communities from Botany Bay, Sydney, Australia - BBAY56_SOAP_K25_complete J. Craig Venter Institute 2209111005 Metagenome Analysis SOAPdenovo released per JGI data release policy No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Plants Unclassified Unclassified Unclassified Delisea pulchra's surface -33.991017 151.232433 393619365 830313 46 0 167 0 0.0 Metagenome 3300002037 *Microbiome Permanent Draft Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease - 2012_BI_B1 University of New South Wales 3300002037 Metagenome Analysis IDBA-UD + SOAPdenovo + GAA made public per user request (Enrique Zozaya - 05/02/16 email) No Yes t.thomas@unsw.edu.au Torsten Thomas Yes 28419766 Host-associated Algae Ectosymbionts Red algae Unclassified Delisea pulchra -33.59 151.13 800993314 2631172 211 64 479 133 0.0 Metagenome 3300025478 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_135m (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025478 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 250353272 467703 183 5 274 8 Unrestricted 0.0 Metagenome 3300042709 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from Lilliput hydrothermal vent, Atlantic Ocean - BspSym_Li_1_10-2 Re-assembly Max Planck Institute for Marine Microbiology 3300042709 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills -9.5481672 -13.2088327 225418935 211446 1 5 11 6 ERX3367180 0.0 Metagenome 3300000759 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 29MAY2009 hypolimnion DOE Joint Genome Institute (JGI) 3300000759 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300003660 *Microbiome Permanent Draft Coalbed water microbial communities from the Lithgow State Coal Mine, New South Wales, Australia Coalbed water microbial communities from the Lithgow State Coal Mine, New South Wales, Australia (LSCM Merged) 3300003660 Metagenome Analysis LSCM Merged released by JGI data releasing policy Yes Yes john_webster89@hotmail.com John Webster No Environmental Aquatic Groundwater Freshwater Coalbed water Coalbed water -33.460524 150.168149 146176181 195374 2032 1 312 0 0.0 Metagenome 3300045536 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Wabash River, Indiana, USA - NASQAN2011_330 DOE Joint Genome Institute (JGI) 3300045536 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.1308 -87.9414 294256691 766294 436 120 855 201 Unrestricted 0.0 Metagenome 3300004216 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 118_HOW13 DOE Joint Genome Institute (JGI) 3300004216 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 42688011 71731 45 0 73 0 SRX2721195 Unrestricted 0.0 Metagenome 3300038720 *Microbiome Permanent Draft Marine microbial communities from North Atlantic, Canada Marine microbial communities from North Atlantic, Canada - 394796 National Research Council, Canada Plant Biotechnology Institute 3300038720 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 46.707 -48.785 24351678 50408 40 22 67 34 0.0 Metagenome 3300028360 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica - Metagenome #681 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028360 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5602 78.1968 68248658 119642 57 1 102 1 SRX2526867 Unrestricted 0.0 Metagenome 3300047491 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lake Yojoa, Honduras - Yojoa_06_2019_Q_hypo (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047491 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Lake Freshwater Unclassified Freshwater 14.8889 -87.9718 775757362 1385162 575 19 1008 25 Unrestricted 0.0 Metagenome 3300028742 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_3 DOE Joint Genome Institute (JGI) 3300028742 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 832344890 1773958 225 46 314 69 SRX5799362 Unrestricted 0.0 Metagenome 3300039181 *Microbiome Permanent Draft Drinking water biofilms microbial communities from hospital in Ohio, USA Drinking water microbial communities from hospital in Ohio, USA - hospital shower hose biofilm Georgia Institute of Technology, U.S. Environmental Protection Agency 3300039181 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Drinking water Freshwater Unclassified Drinking water 40.10720842 -82.18359232 95142495 120924 22 2 39 5 0.0 Metagenome 3300007019 *Microbiome Permanent Draft Non-marine hypersaline water viral communities from Mallorca 2014 (Spain)E1 Non-marine hypersaline water viral communities from Mallorca, Spain, 2014 - E1 T8 University of Alicante 3300007019 Metagenome Analysis IDBA 1.1.1 PRE correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline water 39.338015 3.051796 24546530 70895 11 0 6 0 0.0 Metagenome 3300000832 *Microbiome Permanent Draft Abyssal marine microbial communities from the Red Sea Abyssal marine microbial communities from the Red Sea, sample ts03s Beijing Genomics Institute (BGI) 3300000832 Metagenome Analysis released per JGI data release policy No Yes salah.edinne@gmail.com Salim B No Environmental Aquatic Oceanic Marine Sediment Abyssal marine 20.107523 38.670044 0 0 0 0 0 0 0.0 Metagenome 3300026028 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026028 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.052479 -121.7687 55306897 138857 115 0 229 0 SRX7181219 Unrestricted 0.0 Metagenome 3300029532 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P022V6 Beijing Genomics Institute (BGI) 3300029532 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 129491147 154826 108 0 141 0 0.0 Metagenome 3300006484 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 DOE Joint Genome Institute (JGI) 3300006484 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.234 -123.9135 623944488 1920199 352 51 692 84 SRX2838061 Unrestricted 0.0 Metagenome 3300020704 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 29JUN2009 hypolimnion DOE Joint Genome Institute (JGI) 3300020704 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu; rrmalmstrom@lbl.gov Katherine McMahon; Rex Malmstrom Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 94544317 181672 79 10 114 19 Unrestricted 0.0 Metagenome 3300044456 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 114-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044456 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9873 -107.004 487419698 1305860 526 23 997 64 Unrestricted 8.78 Metagenome 3300025580 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025580 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.045666 -121.866516 272412257 584590 243 0 373 1 SRX7142151 Unrestricted 0.0 Metagenome 3300030003 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N2_3 DOE Joint Genome Institute (JGI) 3300030003 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 766448116 2014153 920 56 1445 87 SRX5355624 Unrestricted 9.03 Metagenome 3300045790 *Microbiome Permanent Draft Seawater and ice microbial communities from Arctic Ocean Melted sea ice microbial communities from Arctic Ocean - MOSAiC PS122_371 DOE Joint Genome Institute (JGI) 3300045790 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Sea ice 87.4458 95.6702 982210105 1495797 438 154 614 227 Unrestricted 69.77 Metagenome 3300053726 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 endosphere DOE Joint Genome Institute (JGI) 3300053726 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121413 -123.269199 443427107 543791 76 102 108 115 Unrestricted 0.0 Metagenome 3300018031 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1 DOE Joint Genome Institute (JGI) 3300018031 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 2 870320655 1922152 716 13 1348 23 SRX3939696 Unrestricted 5.15 Metagenome 3300023538 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_148A University of California, Irvine 3300023538 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 64831888 62235 4 0 2 0 0.0 Metagenome 3300043611 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 136-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043611 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9368 -107.0124 385289118 967704 303 12 593 35 Unrestricted 8.12 Metagenome 3300042072 *Microbiome Permanent Draft Forest and sugarcane field soil microbial communities from Santa Rita do Passa , Quatro, Sao Paulo, Brazil Soil microbial communities from forest in Santa Rita do Passa , Quatro, Sao Paulo, Brazil - FOR-W_3 UNESP-FCAV 3300042072 Metagenome Analysis Custom JGI assembly. Yes Yes No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -21.708519 -47.582469 24881838 50647 25 0 35 0 SRX9176016 0.0 Metagenome 3300009494 *Microbiome Permanent Draft Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin Marine sediment microbial communities from Chincoteague Deepwater methane seep, US Atlantic Margin - Chincoteague Seep MUC-5 12-14 cmbsf Oregon State University 3300009494 Metagenome Analysis MetaSPAdes released per JGI data release policy No Yes rcolwell@coas.oregonstate.edu Frederick Colwell No Environmental Aquatic Cold seeps Marine Sediment methane seep sediment 37.5409 -74.10211667 1303108002 3587965 601 7 1229 13 0.0 Metagenome 3300043476 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 018-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043476 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9215 -106.953 258279239 704808 372 10 755 21 Unrestricted 8.35 Metagenome 3300046732 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-C3 1-5 DOE Joint Genome Institute (JGI) 3300046732 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0435 406040836 683014 241 33 433 48 Restricted 13.51 Metagenome 3300056608 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.16W.9 SIP fraction DOE Joint Genome Institute (JGI) 3300056608 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 185696787 377904 140 21 249 19 Unrestricted 10.48 Metagenome 3300045074 *Microbiome Permanent Draft Hot spring water microbial communities from thermal springs from various locations in Georgia Hot spring water microbial communities from a thermal spring in Samtredia, Georgia - Samtredia 1 G. Eliava Institute of Bacteriophages, Microbiology and Virology 3300045074 Metagenome Analysis Custom JGI assembly. Yes Yes nageli2014@agruni.edu.ge Natia Geliashvili No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 42.170011 42.329011 55706607 88968 78 1 103 0 SRX8418715 0.0 Metagenome 3300070353 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dakota Coteau Field Site, North Dakota, USA - DCFS_062-M-20190724-COMP-DNA1 3300070353 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 6707161 21536 54 3 71 10 0.0 Metagenome 3300039097 *Microbiome Permanent Draft Freshwater lake viral communities from Lake Michigan, near Chicago, USA Freshwater lake viral communities from Lake Michigan, near Chicago, USA- Wilmette140527.1V Genewiz Inc., Loyola University 3300039097 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 42.0791 -87.683 39202617 83186 43 0 55 0 0.0 Metagenome 3300042286 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA MBR feed microbial communities from membrane bioreactor in Denver, Colorado, USA - FD_D326 DOE Joint Genome Institute (JGI) 3300042286 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Wastewater Mine water Industrial wastewater Produced water MBR feed 39.7823 -104.9101 458709311 742600 403 1 533 2 Unrestricted 28.86 Metagenome 3300048070 *Microbiome Permanent Draft Marine and freshwater sediment microbial communities from various locations Marine sediment microbial communities from Caspian Sea - Caspian_Core_2_20-24_cm DOE Joint Genome Institute (JGI) 3300048070 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes smtechtm@mtu.edu Stephen Techtmann No Environmental Aquatic Sediment Marine Unclassified Marine sediment 39.9902 51.5008 880610232 2037007 691 0 1067 1 Unrestricted 7.48 Metagenome 3300027221 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1548A-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027221 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2319 -123.8812 145125787 307698 150 29 246 40 SRX2753629 Unrestricted 0.0 Metagenome 3300036949 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - AD1 32 III DOE Joint Genome Institute (JGI) 3300036949 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 596942723 1077554 612 6 964 7 SRX8359895 Unrestricted 29.27 Metagenome 3300009625 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day59 DOE Joint Genome Institute (JGI) 3300009625 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 39.849 -81.036 17229256 38778 744 3 1153 10 SRX2996523 Unrestricted 0.0 Metagenome 3300069210 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from National Grasslands LBJ, Texas, USA - CLBJ_002-M-20210506-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069210 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Grasslands Soil Unclassified Terrestrial soil 33.40398 -97.57114 3399819512 8220842 1928 41 3877 75 0.0 Metagenome 3300027901 *Microbiome Permanent Draft Marine sediment microbial communities from White Oak River estuary, North Carolina Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-36_30 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027901 Metagenome Analysis spades v. 3.11.1 Yes Yes acidophile@gmail.com Brett Baker Yes 26824177 Environmental Aquatic Intertidal zone Marine Estuary: Microbial mat Marine sediment 34.640199 -77.109447 2405913374 4986014 1376 5 2423 6 SRX3317630 Unrestricted 0.0 Metagenome 3300048794 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-P1(2) 1-5 DOE Joint Genome Institute (JGI) 3300048794 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3549 19.0438 857992953 1294044 179 25 333 38 Restricted 13.39 Metagenome 3300027697 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027697 Metagenome Analysis spades v. 3.11.1 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 557477014 1220005 569 147 905 191 Unrestricted 0.0 Metagenome 7000000217 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 2, subject 764447348 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000217 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 2800256 3710 0 0 0 0 SRX024074 0.0 Metagenome 3300031249 *Microbiome Permanent Draft Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG DOE Joint Genome Institute (JGI) 3300031249 Metagenome Analysis spades v. 3.12.0 Yes Yes rbneum@uw.edu Rebecca Neumann No Host-associated Plants Rhizosphere Roots Soil rhizosphere 47.6516 -122.3045 1291529993 2878065 859 11 1390 18 SRX5346107 Unrestricted 8.92 Metagenome 3300050322 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_89 DOE Joint Genome Institute (JGI) 3300050322 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -76.91 160.935 614274689 885377 118 42 169 59 SRX18236988 Restricted 29.85 Metagenome 3300012595 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100252 University of Pennsylvania 3300012595 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17181323 38352 16 0 23 0 SRX756649 0.0 Metagenome 3300024232 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK05 DOE Joint Genome Institute (JGI) 3300024232 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 366322329 914279 418 20 652 32 SRX4547502 Unrestricted 7.71 Metagenome 3300001873 *Microbiome Permanent Draft Cold seeps microbial communities from Hydrate Ridge, Cascadian Margin, Pacific Ocean Deltaproteobacteria Bin (Bin 2) 3300001873 Metagenome Analysis MetaVelvet released by JGI data releasing policy No Yes fliss005@umn.edu Palmer Fliss, Palmer S. Fliss No Environmental Aquatic Cold seeps Marine Unclassified Cold seeps 44.57033333 -125.1475 5298060 5522 0 0 0 0 0.0 Metagenome 3300064750 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 586 in LaCrete, Alberta, Canada - S00JY_0157 Microbiome Insights 3300064750 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 58.01130917 -116.1709417 6097996 9467 21 0 31 1 0.0 Metagenome 3300008216 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar DOE Joint Genome Institute (JGI) 3300008216 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 38.55 13.18 387528005 759985 167 1 226 1 SRX2753796 Unrestricted 0.0 Metagenome 3300035724 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 DOE Joint Genome Institute (JGI) 3300035724 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1125 -122.987 2227012535 5219266 1268 127 2158 185 SRX8289133 Unrestricted 7.44 Metagenome 3300031852 *Microbiome Permanent Draft Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 DOE Joint Genome Institute (JGI) 3300031852 Metagenome Analysis spades v. 3.12.0 Yes Yes agaudin@ucdavis.edu Amelie Gaudin No Host-associated Plants Rhizosphere Roots Soil rhizosphere 38.5 -121.7 4183634984 10540759 2384 119 4044 267 SRX5799614 Unrestricted 8.97 Metagenome 3300025364 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Section #4 (SPAdes) DOE Joint Genome Institute (JGI) 3300025364 Metagenome Analysis spades v. 3.11.1 Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.973481 -119.476345 103340022 187339 139 18 241 19 SRX3311905 Unrestricted 0.0 Metagenome 3300022740 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - pink nodules DOE Joint Genome Institute (JGI) 3300022740 Metagenome Analysis spades v. 3.11.1-check Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Host-associated Plants Nodule Roots Unclassified root nodules 34.0136 -118.4673 432581062 375302 8 9 16 12 SRX4498639 Unrestricted 55.44 Metagenome 2084038002 *Microbiome Permanent Draft Oil reservoir microbial communities from Wyoming, USA Oil reservoir microbial communities from Wyoming, USA - Sample 547 Lawrence Berkeley National Laboratory 2084038002 Metagenome Analysis released per JGI data release policy No Yes oumason@lbl.gov, omason@fsu.edu Olivia U. Mason, Olivia Mason No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil reservoir 45.0 -105.0 24137551 27533 9 0 11 0 0.0 Metagenome 3300032722 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18027 DOE Joint Genome Institute (JGI) 3300032722 Metagenome Analysis spades v. 3.13.0 Yes Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.0411 -89.6861 849341273 1495690 429 34 635 56 SRX7891775 Unrestricted 20.63 Metagenome 3300025023 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-29 (SPAdes) DOE Joint Genome Institute (JGI) 3300025023 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 48.9698 -130.6666 44194404 47506 8 1 4 1 Unrestricted 0.0 Metagenome 3300044900 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Phormidesmis sp. WJT24-NPBG8 and co-occurring heterotrophs from desert soil from Joshua Tree National Park, Colorado Desert, CA, United States - 20190326_41D DOE Joint Genome Institute (JGI) 3300044900 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Sand Soil Desert Desert soil 33.763 -115.7961 18610812 17434 16 0 16 0 Unrestricted 0.0 Metagenome 3300049175 *Microbiome Permanent Draft Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama - S003_CH3_fluctuating_end DOE Joint Genome Institute (JGI) 3300049175 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes njbouskill@lbl.gov Nicholas Bouskill No Environmental Terrestrial Tropical forest Soil Bulk soil Soil 9.17936 -79.8296 486410723 1309375 303 18 556 34 Unrestricted 7.95 Metagenome 3300048778 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 S2 60-64 DOE Joint Genome Institute (JGI) 3300048778 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3532 19.0475 278920978 369400 71 8 103 5 Restricted 29.77 Metagenome 3300028949 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 397_B Beijing Genomics Institute (BGI) 3300028949 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 12794878 13220 12 0 13 0 ERX491135 0.0 Metagenome 3300053761 *Microbiome Permanent Draft Soil biocrust microbial and viral communities from model ecosystem in Berkeley Lab, California, USA Soil biocrust microbial communities from model ecosystem in Berkeley Lab, California, USA - 9hr_A DOE Joint Genome Institute (JGI) 3300053761 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sroux@lbl.gov Simon Roux No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil biocrust 37.87739 -122.250939 1473758120 2421614 640 8 931 15 Restricted 29.1 Metagenome 3300054073 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin05_60_metaG re-annotation DOE Joint Genome Institute (JGI) 3300054073 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 844229963 1437909 298 1 465 0 SRX3292350 0.0 Metagenome 3300025516 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_8Bad (SPAdes) DOE Joint Genome Institute (JGI) 3300025516 Metagenome Analysis spades v. 3.11.1 Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 119037238 192332 80 0 115 0 SRX3322484 Unrestricted 0.0 Metagenome 3300040101 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Jones Ecological Research Center, Southeast, GA, USA - JERC_002-M-20170725-COMP-DNA1 Battelle Memorial Institute 3300040101 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.19484 -84.46861 12256328 35022 54 10 111 18 0.0 Metagenome 3300046093 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_37 DOE Joint Genome Institute (JGI) 3300046093 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9223 -106.9493 312100331 809038 847 129 1411 198 Unrestricted 0.0 Metagenome 3300002151 *Microbiome Permanent Draft Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran, Adriatic Sea Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge mesohyl, lysed by proteinase K digestion DOE Joint Genome Institute (JGI) 3300002151 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes ute.hentschel@uni-wuerzburg.de Ute Hentschel Humeida No Host-associated Porifera Unclassified Sponge Unclassified Host-associated 45.5099 13.56 298689615 619027 192 18 277 31 SRX4919575 Unrestricted 0.0 Metagenome 3300029446 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Sweden Biosolids microbial communities from sewage treatment plant in Sweden - SWESTP13 - Kappala-digested 114 University of Gothenburg 3300029446 Metagenome Analysis released Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified biosolids 59.355554 18.227079 237779278 397517 205 4 334 2 0.0 Metagenome 3300044220 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T56 S DOE Joint Genome Institute (JGI) 3300044220 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7338 -64.2913 330094908 811600 35 3 56 5 Unrestricted 71.49 Metagenome 3300007310 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 2, subject 764447348 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007310 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 3401974 4780 5 4 8 4 SRX024074 0.0 Metagenome 3300028069 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T0 DOE Joint Genome Institute (JGI) 3300028069 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 126587474 297597 178 4 304 10 SRX8128131, SRX8128132 Unrestricted 0.0 Metagenome 3300046705 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT_PTT1_JUN19_60cm DOE Joint Genome Institute (JGI) 3300046705 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9883 -108.4003 328480817 726121 431 5 774 5 Restricted 12.68 Metagenome 3300025649 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKM (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025649 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline Lake -68.4725 78.188 403510882 783003 382 1 616 1 SRX2746861 Unrestricted 0.0 Metagenome 3300008331 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764224817 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008331 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 65084660 123577 56 0 93 0 0.0 Metagenome 3300040313 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Temperate deciduous broadleaf forest soil microbial communities from Baltimore, USA - 016_R1_022417 University of Maryland 3300040313 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate deciduous broadleaf forest soil 39.48756667 -76.68941667 5417694 17493 26 0 50 0 0.0 Metagenome 3300041725 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_480 MetaG AgResearch, New Zealand, Mosgeil 3300041725 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1450280972 3030433 354 38 1091 42 0.0 Metagenome 3300020571 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 31AUG2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020571 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 132104360 300530 155 24 244 29 SRX1989907 Unrestricted 0.0 Metagenome 3300050208 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water microbial communities from Sandhills, Nebraska, United States - NSL_Smith_2018_MMG DOE Joint Genome Institute (JGI) 3300050208 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.78581 -102.52354 1756024618 2637021 502 54 701 68 Unrestricted 26.2 Metagenome 3300042855 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369 NMDC pilot DOE Joint Genome Institute (JGI) 3300042855 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040645 -106.94847615 1189458376 2894389 685 10 1220 25 SRX5355413 0.0 Metagenome 3300028087 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T50 DOE Joint Genome Institute (JGI) 3300028087 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 222206927 364732 106 17 138 30 SRX7705825, SRX7705826 Unrestricted 0.0 Metagenome 3300020449 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001079 (ERX556008-ERR599020) CEA Genoscope 3300020449 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -1.8191 -84.6284 1134805535 2888975 727 75 1366 141 0.0 Metagenome 3300002282 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP17-I3 3300002282 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300029505 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI012144-13 Beijing Genomics Institute (BGI) 3300029505 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 110959768 131953 97 0 153 0 0.0 Metagenome 3300005819 *Microbiome Permanent Draft Microbial communities of produced water from Jiangsu Oil field in Yangzhou, China Microbial communities of produced water from Jiangsu Oil field in Yangzhou, China - Well_W15 University of California, San Diego 3300005819 Metagenome Analysis SPADES released per JGI data release policy No Yes ddgalzerani@eng.ucsd.edu Daniela Galzerani No Environmental Terrestrial Produced water Oil reservoir Unclassified Petroleum reservoir 32.0 119.0 47930490 121021 70 0 99 0 0.0 Metagenome 3300005284 *Microbiome Permanent Draft Hoatzin crop microbial communities from Cojedes, Venezuela Hoatzin crop microbial communities from Cojedes, Venezuela, sample from fiber fraction 12 v1 DOE Joint Genome Institute (JGI) 3300005284 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes sgtringe@lbl.gov, maria.dominguez1@upr.edu; fgodoyvitorino@gmail.com Susannah Tringe, Maria Gloria Dominguez-Bello; Filipa Godoy Vitorino No Host-associated Birds Esophagus Digestive system Crop Hoatzin crop 8.956944 -68.299167 403873235 922096 472 13 652 22 Unrestricted 0.0 Metagenome 3300022915 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4 DOE Joint Genome Institute (JGI) 3300022915 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 483414442 1237483 604 44 1240 70 SRX4801360 Unrestricted 7.89 Metagenome 3300006736 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG DOE Joint Genome Institute (JGI) 3300006736 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -13.003 -80.809 367621348 829290 85 0 99 0 SRX2926136 Unrestricted 0.0 Metagenome 3300066296 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONZ_003-M-20170710-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066296 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.10077 -96.56309 98326072 289093 175 9 379 13 0.0 Metagenome 3300026720 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2w-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026720 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 17816435 59923 92 3 151 8 SRX1991201 Unrestricted 0.0 Metagenome 3300036360 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C5-1A DOE Joint Genome Institute (JGI) 3300036360 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 142526198 443863 287 3 512 17 SRX8787101 Unrestricted 4.76 Metagenome 3300011496 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01117 Weill Cornell Medical College 3300011496 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.66 -73.88 17692417 28367 12 0 16 0 SRX823072 0.0 Metagenome 3300017765 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 36 SPOT_SRF_2012-09-28 DOE Joint Genome Institute (JGI) 3300017765 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 424659836 1023187 81 29 138 51 SRX7207525 Unrestricted 124.41 Metagenome 3300008280 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160582958 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008280 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 77224037 115799 64 1 98 2 0.0 Metagenome 3300014157 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG DOE Joint Genome Institute (JGI) 3300014157 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 1060928510 2549201 817 32 1550 71 SRX3048030, SRX3048031 Unrestricted 4.21 Metagenome 3300045577 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mobile River, Alabama, USA - NASQAN2014_085 DOE Joint Genome Institute (JGI) 3300045577 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 31.0865 -87.9772 285292260 729728 420 88 731 123 Unrestricted 0.0 Metagenome 3300002076 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3 DOE Joint Genome Institute (JGI) 3300002076 Metagenome Analysis Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 254831552 758911 745 42 1281 67 SRX1990941 Unrestricted 0.0 Metagenome 3300042699 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from Clueless hydrothermal vent, Atlantic Ocean - BspSym_Cl_4_11-5 Re-assembly Max Planck Institute for Marine Microbiology 3300042699 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills -4.803266 -12.3718 313216912 282819 3 7 4 9 ERX3367182 0.0 Metagenome 3300003472 *Microbiome Permanent Draft Beaver gut microbial communities from British Columbia, Canada Beaver gut microbial communities from British Columbia, Canada - Beaver Fecal Sample 1 Genome Quebec 3300003472 Metagenome Analysis MIRA released per JGI data release policy No Yes keithmewis@gmail.com Keith Mewis No Host-associated Mammals Large intestine Digestive system Fecal Beaver gut 49.01063 -122.625468 131067612 226610 269 15 419 15 0.0 Metagenome 3300020188 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041411US metaG (spades assembly) DOE Joint Genome Institute (JGI) 3300020188 Metagenome Analysis spades v. 3.10.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 903062462 1714085 434 28 656 51 SRX3920934 Unrestricted 37.94 Metagenome 3300027823 *Microbiome Permanent Draft Freshwater microbial communities from lake liftoff mats and glacier meltwater in Antarctica Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-06 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027823 Metagenome Analysis spades v. 3.11.1 Yes Yes slonczewski@kenyon.edu Joan Slonczewski No Environmental Aquatic Ice Freshwater Liftoff microbial mat Freshwater -77.605 163.163 1357647602 2404076 598 29 871 52 SRX2753505 Unrestricted 0.0 Metagenome 3300031183 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_4 DOE Joint Genome Institute (JGI) 3300031183 Metagenome Analysis spades v. 3.12.0 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 150428370 214798 241 0 268 0 SRX5661312 Unrestricted 124.88 Metagenome 3300060289 *Microbiome Permanent Draft Sediment microbial communities from the PNNL SFA Hanford 300 Area, Columbia River, WA, USA Sediment microbial communities from in situ POM Reactor at the PNNL SFA Hanford 300 Area, Columbia River, WA, USA - Shallow Unashed No POM DOE Joint Genome Institute (JGI) 3300060289 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes eroden@geology.wisc.edu Eric Roden No Environmental Aquatic River Freshwater Sediment Sediment 46.467778 -119.464444 1088433442 1845888 582 140 785 203 Unrestricted 23.65 Metagenome 3300013177 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100232 University of Pennsylvania 3300013177 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12253529 35719 28 0 43 0 SRX756669 0.0 Metagenome 3300047382 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_111130.NP2 DOE Joint Genome Institute (JGI) 3300047382 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 875360195 1822603 552 39 877 76 Unrestricted 15.82 Metagenome 3300024490 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepB_0h DOE Joint Genome Institute (JGI) 3300024490 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 121695037 294454 137 3 211 14 SRX4547361 Unrestricted 16.69 Metagenome 3300024925 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 124_LOW14 (SPAdes) DOE Joint Genome Institute (JGI) 3300024925 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 56711859 85273 24 0 33 0 SRX2721723 Unrestricted 0.0 Metagenome 3300017718 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - Lowphox_11 viral metaG DOE Joint Genome Institute (JGI) 3300017718 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -29.499 -71.609 153560296 357062 28 6 44 7 SRX8048295 Unrestricted 16.6 Metagenome 3300014706 *Microbiome Permanent Draft Human fecal and colon tissue microbial communities from Howard University Cancer Center, USA Human colon tissue microbial communities from Howard University Cancer Center, USA - CC0995 HiThru Analytics LLC 3300014706 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Colon mucosa Human colon tissue 56054843 97802 65 0 119 0 SRX1620412 0.0 Metagenome 3300045098 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_7_A DOE Joint Genome Institute (JGI) 3300045098 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 174255893 221773 106 1 110 1 Unrestricted 95.95 Metagenome 3300049520 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_B_7_drought DOE Joint Genome Institute (JGI) 3300049520 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 163088557 408289 383 19 784 32 Unrestricted 12.97 Metagenome 3300009478 *Microbiome Permanent Draft Host-associated microbial communities of aphids from plants in several locations around USA Microbial communities of aphids from honeysuckle in Ottawa, Ontario, CA - Hyadaphis tataricae CNC#HEM071793 seqcov University of Texas, Austin 3300009478 Metagenome Analysis CLC Genomics released per JGI data release policy Yes Yes becky.chong@utexas.edu Rebecca Chong No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified honeysuckle 45.4516 -75.68045 228527575 121506 2 1 3 2 0.0 Metagenome 3300057193 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Michigan, United States - E2020-0013 DOE Joint Genome Institute (JGI) 3300057193 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.81916 -83.35921 343568675 765557 276 145 430 267 Unrestricted 25.58 Metagenome 3300027266 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027266 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 166136309 430424 255 22 503 36 SRX3311916 Unrestricted 0.0 Metagenome 3300069286 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, Pacific Southwest, CA, USA - SJER_003-M-20170316-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069286 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.10878 -119.73228 61240726 180867 186 18 352 30 0.0 Metagenome 7000000533 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763901136 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000533 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 15234152 31143 0 0 0 0 0.0 Metagenome 3300028191 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_06_06_50m DOE Joint Genome Institute (JGI) 3300028191 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 538889832 1063628 633 0 976 2 SRX5244785 Unrestricted 16.59 Metagenome 3300001271 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY90 J. Craig Venter Institute (JCVI) 3300001271 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 1616966484 7979208 194 178 531 346 0.0 Metagenome 3300042210 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D94_1 DOE Joint Genome Institute (JGI) 3300042210 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 175957508 265350 134 8 164 21 Unrestricted 67.2 Metagenome 3300015255 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT466_16_10D DOE Joint Genome Institute (JGI) 3300015255 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.923 -106.9516 224111498 529401 312 14 629 36 SRX3780475 Unrestricted 4.68 Metagenome 3300025107 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection D3 (SPAdes) DOE Joint Genome Institute (JGI) 3300025107 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 27774985 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.534762 -107.782602 339959766 563928 267 16 419 20 SRX1085372, SRX2233596 Unrestricted 0.0 Metagenome 3300022425 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1BM2 JM50 AGRF 3300022425 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 35375101 71403 26 1 46 3 0.0 Metagenome 3300031554 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-130 DOE Joint Genome Institute (JGI) 3300031554 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh sediment 42.722 -70.847 475439018 835241 403 5 614 9 SRX6464080 Unrestricted 15.61 Metagenome 3300002952 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-7-D DOE Joint Genome Institute (JGI) 3300002952 Metagenome Analysis Yes Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 126670649 264747 209 24 401 56 SRX2568495 Unrestricted 0.0 Metagenome 3300021561 *Microbiome Permanent Draft Metagenomes from anaerobic digester of solid waste Anaerobic digester digestate microbial community, University of Toronto, Ontario, Canada - DG074 spades University of Toronto 3300021561 Metagenome Analysis SPAdes-3.10.1 Yes Yes elizabeth.edwards@utoronto.ca; camillaln@gmail.com Elizabeth A. Edwards; Camilla Nesb? No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic digester digestate 43.5479 -79.6609 1098453871 2472480 666 6 1142 12 0.0 Metagenome 3300010337 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015 DOE Joint Genome Institute (JGI) 3300010337 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 1234957420 2848737 834 49 1501 100 SRX2524974 Unrestricted 0.0 Metagenome 3300025370 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA4M (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025370 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu; shaomei.he@gmail.com Katherine McMahon; Shaomei He No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 87637415 218218 92 12 175 21 SRX2565124 Unrestricted 0.0 Metagenome 3300005954 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_21-May-14 DOE Joint Genome Institute (JGI) 3300005954 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 176351269 580666 395 98 736 163 SRX2838982 Unrestricted 0.0 Metagenome 3300040222 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA FertPrarie soil microbial communities from Boone County, Iowa, USA - PF15-MM-July2012 Iowa State University 3300040222 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land FertPrarie soil 42.01375 -93.783837 8696821 27603 101 4 218 6 0.0 Metagenome 3300035393 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from Middle Island sinkhole, Lake Huron, Michigan, United States - MIS.2017.108B reassembly DOE Joint Genome Institute (JGI) 3300035393 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes macgregb@umn.edu; sgrim@umich.edu Barbara MacGregor; Sharon Grim No Environmental Aquatic Lake Freshwater Sediment microbial mat 45.1993 -83.3279 91141219 117965 37 13 57 19 SRX8174182 0.0 Metagenome 3300026934 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 10 (SPAdes) DOE Joint Genome Institute (JGI) 3300026934 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 97995800 207836 92 4 192 11 SRX1984681 Unrestricted 0.0 Metagenome 3300050465 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - W17NW8 DOE Joint Genome Institute (JGI) 3300050465 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 107994002 206190 200 73 358 73 Unrestricted 19.42 Metagenome 3300008654 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 765094712 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008654 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 13042900 29348 17 0 30 0 0.0 Metagenome 3300025245 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025245 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.9082 -79.0499 210906209 365107 112 4 128 2 SRX1991085 Unrestricted 0.0 Metagenome 3300027879 *Microbiome Permanent Draft Soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, under manipulated climate change conditions. Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027879 Metagenome Analysis spades v. 3.11.1 Yes Yes jmtalbot@bu.edu; ptempler@bu.edu Jennifer Bhatnagar; Pamela Templer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 1531665250 3673814 707 96 1277 153 SRX2838816 Unrestricted 0.0 Metagenome 3300070391 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_034-M-20180709-COMP-DNA1 3300070391 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 21124049 64915 69 4 133 11 0.0 Metagenome 3300039767 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_037-O-20170731-COMP-DNA1 Battelle Memorial Institute 3300039767 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 40894520 111146 63 8 125 17 0.0 Metagenome 3300029327 *Microbiome Permanent Draft Electrode-associated soil and biofilms microbial communities from MFCs in Japan Anode biofilm microbial communities from glucose-fed MFC - GM-anode biofilm Tokyo University of Pharmacy and Life Sciences 3300029327 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Engineered Industrial production Bioanode Engineered product Biofilm Anode biofilm 35.638 139.3817 146280189 192926 83 3 98 5 DRX011532 0.0 Metagenome 7000000562 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763820215 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000562 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 6856362 13263 0 0 0 0 0.0 Metagenome 3300070509 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_004-M-20210304-COMP-DNA1 Battelle Memorial Institute 3300070509 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.108972 -119.746305 6.21-6.71 41108 138 5 0 13 0 0.0 Metagenome 3300028882 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3 DOE Joint Genome Institute (JGI) 3300028882 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 1278465995 2713907 370 48 545 69 SRX5799155 Unrestricted 0.0 Metagenome 3300048064 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_190806.NP1 DOE Joint Genome Institute (JGI) 3300048064 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 850490846 1854693 491 132 755 217 Unrestricted 12.79 Metagenome 3300021234 *Microbiome Permanent Draft Environmental DNA from river Freshwater microbial communities from Jinzu River in Toyama Prefecture, Japan-20170104_3, 0.2 Toyama Prefectural University 3300021234 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic River Freshwater Unclassified freshwater 36.70387 137.20502 61853345 189537 21 2 49 3 0.0 Metagenome 3300036799 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in California, United States - CAC_3 DOE Joint Genome Institute (JGI) 3300036799 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil 35.5 -121.0 2590792239 4274606 728 94 1127 119 SRX8393026 Unrestricted 13.58 Metagenome 3300003591 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_150m_DNA DOE Joint Genome Institute (JGI) 3300003591 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 154464305 322861 166 6 304 22 Unrestricted 0.0 Metagenome 3300035158 *Microbiome Permanent Draft Hypersaline lacustrine bacterial communities from Kiritimati Island Lacustrine bacterial communities from hypersaline Lake 1, Kiritimati Island, Kiribati - 22.5-34.3 cm University of Illinois, Urbana-Champaign 3300035158 Metagenome Analysis MEGAHIT v. 1.1.1 released by Mingfei Chen No Yes jconro@illinois.edu Jessica Conroy No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Sediment lacustrine 1.9 -157.4 1240050998 2229412 513 5 1007 6 0.0 Metagenome 2149837010 *Microbiome Permanent Draft Freshwater microbial communities from LaBonte Lake, Laramie, Wyoming, USA Fresh water microbial communities from LaBonte Lake, Laramie, Wyoming, sample from pre-bloom DOE Joint Genome Institute (JGI) 2149837010 Metagenome Analysis released based on JGI ITS No Yes sgtringe@lbl.gov, nlward@uwyo.edu Susannah Tringe, Naomi Ward No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.321 -105.586 139235803 367751 252 56 258 0 Unrestricted 0.0 Metagenome 3300003309 *Microbiome Permanent Draft Cnidaria microbial communities from the Caribbean, with Black Band disease Guam 3300003309 Metagenome Analysis IDBA_UD released per PI's request No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified Cnidaria 13.4644 144.6439 113479370 209252 196 44 295 73 0.0 Metagenome 3300042642 *Microbiome Permanent Draft Soil microbial communities from Wonju, South Korea Soil microbial communities from Wonju, South Korea - Sample SP1 Macrogen Inc 3300042642 Metagenome Analysis MEGAHIT v. 2.4.2 released by JGI data releasing policy No Yes mistiers2@gmail.com Jin-Kyung Hong No Environmental Terrestrial Unclassified Soil Unclassified Soil 37.277123 127.903091 221024266 261253 40 2 43 2 0.0 Metagenome 3300056613 *Microbiome Permanent Draft Sediment microbial communities from coastal wetlands in Copper River Delta, Alaska, USA Sediment microbial communities from freshwater pond in Copper River Delta, Alaska, USA - Low-clay-rep1 DOE Joint Genome Institute (JGI) 3300056613 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rcolwell@coas.oregonstate.edu Frederick Colwell No Environmental Aquatic Pond Freshwater Sediment Sediment 60.478 -145.382 232916755 428530 208 19 375 26 Unrestricted 86.88 Metagenome 3300001606 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF028 DOE Joint Genome Institute (JGI) 3300001606 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 657208 1802 21 1 25 7 SRX2014318 Unrestricted 0.0 Metagenome 3300048640 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from North Pacific Ocean - CTD-AT42-06-009-32m-0.65 DOE Joint Genome Institute (JGI) 3300048640 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 9.83899 -104.29088 625930178 1056952 316 36 482 63 Unrestricted 38.23 Metagenome 3300030065 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from colorectal cancer patient in Houston, USA - MG100125 University of Michigan 3300030065 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 29.76 -95.37 29824873 52677 62 0 93 0 0.0 Metagenome 3300000261 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P20_1000 DOE Joint Genome Institute (JGI) 3300000261 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 49.566667 -138.666667 100937597 259913 103 14 172 29 Unrestricted 0.0 Metagenome 3300042295 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME26Jun2018-rr0419 DOE Joint Genome Institute (JGI) 3300042295 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1047105481 1635259 395 91 496 124 Unrestricted 19.57 Metagenome 3300009702 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV14_V59a metaG DOE Joint Genome Institute (JGI) 3300009702 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Volcanic Marine Unclassified Deep subsurface 36.5263 25.4867 1735356867 3086773 1012 17 1524 34 SRX3203424 Unrestricted 0.0 Metagenome 3300039388 *Microbiome Permanent Draft Soil microbial communities from the crude oil polluted soil from Bobrka and the control soil from Bialowieza national park, Poland Soil microbial communities from Bialowieza Forest, Poland - X5A3 v. 2 Illumina 3300039388 Metagenome Analysis metaSPAdes v. 1.2.4 released by JGI data releasing policy No Yes valeria.imperato@uhasselt.be Valeria Imperato No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 52.7 23.86667 2373273 6749 12 2 26 2 0.0 Metagenome 3300045940 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P15SSCI_191107_c DOE Joint Genome Institute (JGI) 3300045940 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 737005705 1216657 223 0 377 0 SRX20650855 Unrestricted 12.18 Metagenome 3300012058 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ019 MetaG DOE Joint Genome Institute (JGI) 3300012058 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.778 -74.6305 136404659 214708 34 136 63 262 SRX3539453 Unrestricted 0.0 Metagenome 3300006172 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014 DOE Joint Genome Institute (JGI) 3300006172 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment watersheds 41.1289 -78.4195 3103928674 10740663 2408 109 4460 242 SRX2745725 Unrestricted 0.0 Metagenome 3300022880 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6 DOE Joint Genome Institute (JGI) 3300022880 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 326377894 863102 546 20 1003 49 SRX4801361 Unrestricted 7.65 Metagenome 3300042400 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME08Nov2005-rr0067 DOE Joint Genome Institute (JGI) 3300042400 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 860185224 1308361 255 34 354 61 Unrestricted 26.94 Metagenome 3300020492 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 01JUN2011 deep hole epilimnion ns (SPAdes) DOE Joint Genome Institute (JGI) 3300020492 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 80394658 164662 68 13 113 14 SRX1989279 Unrestricted 0.0 Metagenome 3300038506 *Microbiome Permanent Draft Production water microbial communities from oil reservoir in Jiangsu oilfield, Yangzhou, China Production water microbial communities from oil reservoir in Jiangsu oilfield, Yangzhou, China - Jiangsu_W9-18_metaG East China University of Science and Technology 3300038506 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Production water 33.12 120.23 14683674 26967 19 0 33 0 0.0 Metagenome 3300047453 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_190807.NP2 DOE Joint Genome Institute (JGI) 3300047453 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 439859898 878073 290 37 399 44 Unrestricted 12.19 Metagenome 3300012586 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100540 University of Pennsylvania 3300012586 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 18017448 34090 37 2 48 3 SRX756214 0.0 Metagenome 2001200004 *Microbiome Finished Fossil microbial community from Whale Fall, Santa Cruz Basin of the Pacific Ocean and West Antarctic Peninsula Fossil microbial communities from Whale Fall, West Antarctic Peninsula - Bone DOE Joint Genome Institute (JGI) 2001200004 Metagenome Analysis No Yes emrubin@lbl.gov Eddy Rubin Yes 15845853 Environmental Aquatic Fossil Marine Whale fall Fossil -65.1 -64.47 30784116 38271 7 0 4 0 0.0 Metagenome 3300036398 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2006D6-rr0029 DOE Joint Genome Institute (JGI) 3300036398 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1483141025 2830040 669 76 939 127 SRX8201828 Unrestricted 13.0 Metagenome 3300032605 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18025_13 DOE Joint Genome Institute (JGI) 3300032605 Metagenome Analysis spades v. 3.13.0 Yes Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.0411 -89.6861 822812338 1489886 456 40 672 74 SRX7891776 Unrestricted 20.31 Metagenome 3300004383 *Microbiome Permanent Draft Marine microbial communities from Bothnian Bay, Baltic Sea Marine microbial communities from Bothnian Bay, Baltic Sea University of Gottingen 3300004383 Metagenome Analysis Velvet and Metavelvet released per JGI data release policy No Yes creyes6@gmail.com Carolina Reyes No Environmental Aquatic Unclassified Marine Unclassified Marine sediment 65.4530556 23.3088889 58161824 241564 108 9 302 15 0.0 Metagenome 3300022694 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex DOE Joint Genome Institute (JGI) 3300022694 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified groundwater sediment 38.9201 -106.9487 .3 768389527 1761743 507 10 882 9 SRX4394281 Unrestricted 0.0 Metagenome 3300065485 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Abby Road, Pacific Northwest, WA, USA - ABBY_002-O-20170605-COMP-DNA1 re-annotation Battelle Memorial Institute 3300065485 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.76243 -122.33033 12574384 40186 89 8 151 16 0.0 Metagenome 3300024415 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 76D DOE Joint Genome Institute (JGI) 3300024415 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 295581594 602703 194 16 295 27 SRX4473604 Unrestricted 17.88 Metagenome 3300027135 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepB_8h DOE Joint Genome Institute (JGI) 3300027135 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 124182043 247204 125 12 194 17 SRX5245176 Unrestricted 15.26 Metagenome 3300025692 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-311 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025692 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.28381 -156.5985 449252960 882454 282 4 467 7 SRX1990905 Unrestricted 0.0 Metagenome 3300006626 *Microbiome Permanent Draft Soil microbial communities from the Leymus chinensis steppe, China - nitrogen deposition Soil microbial communities from the Leymus chinensis steppe, China - after adding 17.5 g N m- 2, yr-1 Chengdu Institute of Biology, Chinese Academy of Sciences 3300006626 Metagenome Analysis velvet released per JGI data release policy No Yes ruijp@cib.ac.cn Junpeng Rui No Environmental Terrestrial Unclassified Soil Unclassified soil 43.63 116.7 314721732 1260264 369 31 717 102 0.0 Metagenome 3300028374 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #897 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028374 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 155160650 304688 135 11 219 11 SRX2526868 Unrestricted 0.0 Metagenome 3300028992 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 268_4M Beijing Genomics Institute (BGI) 3300028992 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 58664104 62908 37 0 32 0 ERX491046 0.0 Metagenome 3300008950 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1552A-02 DOE Joint Genome Institute (JGI) 3300008950 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.1869 -123.8842 353503772 671197 361 23 571 41 SRX2753728 Unrestricted 7.59 Metagenome 3300026630 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN405 (SPAdes) DOE Joint Genome Institute (JGI) 3300026630 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Soil 44.20517707 -122.1284473 280016 936 13 0 13 1 SRX1986911 Unrestricted 0.0 Metagenome 3300024468 *Microbiome Permanent Draft Permafrost microbial communities from glacier foreland in Svalbard, Norway Permafrost microbial communities from glacier foreland in Svalbard, Norway - ML132 KOREA POLAR RESEARCH INSTITUTE 3300024468 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes sarbjeet.niraula@mavs.uta.edu Sarbjeet Niraula No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 78.90127584 12.07390261 8.4 7653867 23602 58 12 132 22 0.0 Metagenome 3300000534 *Microbiome Permanent Draft Freshwater sediment microbial communities from Lake Washington, Seattle, USA, for methane and nitrogen cycles Freshwater sediment microbial communities from Lake Washington, Seattle, for methane and nitrogen Cycles - SIP 13C-methane anaerobic+nitrate v2 (version 2) DOE Joint Genome Institute (JGI) 3300000534 Metagenome Analysis Newbler released based on JGI ITS Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova Yes 23638358 Environmental Aquatic Lentic Freshwater Sediment Freshwater sediment 47.07 -122.27889 23813125 55911 35 0 45 0 Unrestricted 0.0 Metagenome 3300027548 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027548 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 270996144 687346 326 43 624 60 SRX2552951, SRX2552950 Unrestricted 0.0 Metagenome 3300001454 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample F53-1 shallow-092012 DOE Joint Genome Institute (JGI) 3300001454 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 77590028 218179 117 25 187 49 SRX1987694 Unrestricted 0.0 Metagenome 3300048435 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_110907.NP2 DOE Joint Genome Institute (JGI) 3300048435 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 429680105 923989 361 59 495 94 Unrestricted 12.48 Metagenome 3300020381 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291769-ERR318620) CEA Genoscope 3300020381 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 33.93 32.7322 705118055 1606568 362 7 614 11 0.0 Metagenome 3300037476 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - CCW_050217 DOE Joint Genome Institute (JGI) 3300037476 Metagenome Analysis metaspades v. 3.13.0 Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.9035 -89.3341 781313183 2103598 687 45 1315 74 SRX9381656 Unrestricted 7.09 Metagenome 3300001829 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM55, ROCA_DNA132_0.2um_27g 3300001829 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River plume Marine Plankton Marine plankton 12.4145 -52.2197 37608851 98579 10 2 23 9 0.0 Metagenome 3300057151 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2016-0044 DOE Joint Genome Institute (JGI) 3300057151 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.827 -83.193 707487440 1477939 504 165 776 253 Unrestricted 28.19 Metagenome 3300045768 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - P2-R2-A DOE Joint Genome Institute (JGI) 3300045768 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.357 19.047 377394117 811615 216 29 391 51 Unrestricted 7.14 Metagenome 3300002759 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE17-E DOE Joint Genome Institute (JGI) 3300002759 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.32 285804 942 22 9 37 13 SRX1991446 Unrestricted 0.0 Metagenome 3300028153 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_26JUN2017_LD1 DOE Joint Genome Institute (JGI) 3300028153 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 75424429 147269 6 40 2 82 SRX5345801 Unrestricted 20.68 Metagenome 3300053169 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S53_C_D45 hydrophobic DOE Joint Genome Institute (JGI) 3300053169 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 454570191 693012 229 7 306 5 Restricted 0.0 Metagenome 3300039982 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_006-O-20160719-COMP-DNA1 Battelle Memorial Institute 3300039982 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 18045245 52438 106 12 146 32 0.0 Metagenome 2014031007 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP11 Octopus Springs v1 DOE Joint Genome Institute (JGI) 2014031007 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu, binskeep@montana.edu; daniel.colman@montana.edu William Inskeep, William P. Inskeep; Daniel Colman Yes 23653623, 23755042, 26140529 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.5340836 -110.7978895 7.9 28556353 44644 0 0 0 0 Unrestricted 0.0 Metagenome 3300025079 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-48 (SPAdes) DOE Joint Genome Institute (JGI) 3300025079 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 50.0005 -144.9964 159068404 325941 49 0 59 0 Unrestricted 0.0 Metagenome 3300011820 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00225 Weill Cornell Medical College 3300011820 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.86 -73.92 35598282 60719 14 0 18 0 SRX822204 0.0 Metagenome 3300069642 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Treehaven, Great Lakes, WI, USA - TREE_002-O-20170707-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069642 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.49369 -89.58571 321281908 850549 305 64 617 124 0.0 Metagenome 3300029011 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 258_12M Beijing Genomics Institute (BGI) 3300029011 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 55766544 74975 75 0 87 0 ERX491031 0.0 Metagenome 3300026506 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 4D DOE Joint Genome Institute (JGI) 3300026506 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 214733101 590039 258 35 382 51 SRX4457295 Unrestricted 17.61 Metagenome 3300049157 *Microbiome Permanent Draft Marine sediment microbial communities from Pacific Ocean, California, USA Marine sediment microbial communities from Pacific Ocean, California, USA - SDPL21_R4 DOE Joint Genome Institute (JGI) 3300049157 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pjensen@ucsd.edu Paul r. Jensen No Environmental Aquatic Intertidal zone Marine Sediment Marine sediment 32.66 -117.24 280681037 495465 178 60 346 83 Unrestricted 31.61 Metagenome 3300014839 *Microbiome Permanent Draft Permafrost microbial communities from Stordalen Mire, Sweden Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300014839 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rich.270@osu.edu Virginia Rich Yes 30013118 Environmental Terrestrial Wetlands Soil Permafrost Fen 68.35 19.05 3939174349 7456094 2387 20 4083 28 SRX3904701, SRX3904703, SRX3904702, SRX3904705, SRX3904704, SRX3904707, SRX3904706, SRX3904708 Unrestricted 12.66 Metagenome 3300040935 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - FS_N2_2 DOE Joint Genome Institute (JGI) 3300040935 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.5324 -110.7974 193682337 316597 99 2 154 2 SRX9633754 Unrestricted 408.74 Metagenome 3300028398 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in the Atlantic and Pacific Ocean Hydrothermal vent microbial communities from Mid Atlantic Ridge, Atlantic Ocean - 356-284 DOE Joint Genome Institute (JGI) 3300028398 Metagenome Analysis spades v. 3.11.1 Yes Yes pgirguis@oeb.harvard.edu Peter Girguis No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent 37.2917 -32.2779 596509297 1061789 519 7 856 2 SRX5246604 Unrestricted 26.24 Metagenome 3300001530 *Microbiome Permanent Draft Sheep rumen microbial communities from New Zealand from high and low methane emitting sheep Sheep rumen microbial communities from New Zealand - Rank10_low DOE Joint Genome Institute (JGI) 3300001530 Metagenome Analysis Velvet Released because these are assemblies from SRA data No Yes janine.kamke@agresearch.co.nz, janine.kamke@uni-wuerzburg.de Janine Kamke No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen -40.352 175.608 378364404 806307 510 71 936 68 0.0 Metagenome 3300017703 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - ?Lowphox_02 viral metaG DOE Joint Genome Institute (JGI) 3300017703 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -20.099 -70.892 155755940 379362 11 0 19 0 SRX7206577 Unrestricted 16.47 Metagenome 3300050034 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvC-P(1) 10-14 DOE Joint Genome Institute (JGI) 3300050034 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.355 19.0437 664802952 868497 235 13 266 19 Restricted 28.37 Metagenome 2032320002 *Microbiome Draft Soil microbial communities from FACE and OTC sites in USA Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ DOE Joint Genome Institute (JGI) 2032320002 Metagenome Analysis Newbler released based on JGI ITS No Yes kuske@lanl.gov Cheryl Kuske No Environmental Terrestrial Sand Soil Desert Soil 36.766667 -115.95 202685464 534745 95 0 210 0 Unrestricted 0.0 Metagenome 3300024263 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from South Atlantic Ocean to uncover new lineages of life (NeLLi) - Benguela_00093 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300024263 Metagenome Analysis spades v. 3.11.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Oceanic Marine Sediment Deep subsurface -27.74 14.251 1061199597 2254741 767 4 1299 10 SRX2524357 Unrestricted 0.0 Metagenome 3300033491 *Microbiome Permanent Draft Hot spring microbial communities from different geyser basins in Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Norris Geyser Basin, Yellowstone National Park, WY, United States - NOR.PS_S DOE Joint Genome Institute (JGI) 3300033491 Metagenome Analysis spades v. 3.13.0 Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Near-boiling (>90C) Thermal springs Sediment hot spring sediment 44.7265 -110.7091 96035301 180196 77 2 64 5 SRX7584301 Unrestricted 712.36 Metagenome 3300013009 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_9_15 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300013009 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jim.fredrickson@pnnl.gov; binskeep@montana.edu Jim Fredrickson; William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.7315 -110.7113 3 254667138 747343 229 0 452 0 SRX2939974 Unrestricted 0.0 Metagenome 3300011539 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00635 Weill Cornell Medical College 3300011539 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.83 -73.94 14237671 17885 9 0 14 0 SRX822602 0.0 Metagenome 3300042877 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367 NMDC pilot DOE Joint Genome Institute (JGI) 3300042877 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040645 -106.94847615 965642213 2372658 625 5 1093 8 SRX5355416 0.0 Metagenome 3300033988 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Soil microbial communities from Mojave Desert, California, United States - 5NOC DOE Joint Genome Institute (JGI) 3300033988 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Desert Soil Unclassified soil 34.7856 -115.66 152720603 388182 371 14 661 25 SRX7613782 Unrestricted 10.4 Metagenome 3300049706 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_B_2_control DOE Joint Genome Institute (JGI) 3300049706 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 138787537 313967 349 12 532 20 Unrestricted 12.94 Metagenome 3300022678 *Microbiome Permanent Draft Carpinteria Salt Marsh Metagenomes 2014 to 2017 Marine microbialite microbial communities from marsh intertidal zone in Carpinteria, CA, United States - B1 University of California, Irvine 3300022678 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Aquatic Intertidal zone Marine Microbialites Microbialites 34.401 -119.534 59753169 60393 25 4 28 6 0.0 Metagenome 3300038630 *Microbiome Permanent Draft Microbial communities from Yellowstone National Park hot springs 2017 Hot spring sediment microbial communities from Empress Pool OF1, Yellowstone National Park, USA - 170630B University of Minnesota Genomics Center 3300038630 Metagenome Analysis SPAdes v. 3.11.0 released by JGI data releasing policy Yes Yes trinityh@umn.edu Trinity Hamilton No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.68760238 -110.72768368 222603420 441247 142 0 295 0 0.0 Metagenome 3300022333 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Garden Lake, Rottnest Island (WA - Australia) - GL1GP1 JM10 AGRF 3300022333 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.995604 115.536873 22442927 45355 30 0 53 0 0.0 Metagenome 3300014520 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 637_4M Beijing Genomics Institute (BGI) 3300014520 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 48589621 52348 30 0 38 0 ERX491292 0.0 Metagenome 3300036992 *Microbiome Permanent Draft Soil microbial communities from a coastal freshwater wetland in North Carolina, United States Soil microbial communities from coastal freshwater wetland in North Carolina, United States - 8PFC DOE Joint Genome Institute (JGI) 3300036992 Metagenome Analysis metaspades v. 3.13.0 Yes Yes peraltaa@ecu.edu Ariane Peralta No Environmental Terrestrial Wetlands Soil Unclassified soil 35.8959 -76.1658 388217389 664424 189 7 324 7 SRX8387866 Unrestricted 14.3 Metagenome 3300013155 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100620 University of Pennsylvania 3300013155 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17897474 39629 24 0 27 1 SRX756474 0.0 Metagenome 3300048567 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - Maria86 DOE Joint Genome Institute (JGI) 3300048567 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Sand Soil Desert sand -78.0246 164.293 272137692 561402 185 2 304 1 Unrestricted 0.0 Metagenome 3300011485 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00951 Weill Cornell Medical College 3300011485 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -74.0 18414005 26963 13 0 14 0 SRX822913 0.0 Metagenome 3300039892 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Moab, Southern Rockies & Colorado Plateau, UT, USA - MOAB_005-M-20170522-COMP-DNA1 Battelle Memorial Institute 3300039892 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.24833 -109.38827 23037239 66613 93 2 176 5 0.0 Metagenome 3300066285 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Mid-Atlantic, VA, USA - BLAN_032-M-20170714-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066285 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Farm Terrestrial soil 39.06026 -78.07164 4157863 13690 47 11 98 13 0.0 Metagenome 7000000407 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 765034022 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000407 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 68784493 104431 0 0 0 0 0.0 Metagenome 3300002519 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - ETNP_2_300 DOE Joint Genome Institute (JGI) 3300002519 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 18.92 -108.7999 230226134 535713 14 0 27 2 SRX2557415 Unrestricted 0.0 Metagenome 7000000688 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 1, subject 160603188 replicate 1 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000688 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 22291072 33508 0 0 0 0 SRX024537, SRX024538 0.0 Metagenome 3300035634 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_1_7_6 mgh University of Alberta 3300035634 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 59270811 79750 29 0 41 0 0.0 Metagenome 3300027102 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF028 (SPAdes) DOE Joint Genome Institute (JGI) 3300027102 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 17778847 55230 45 4 65 3 SRX2014318 Unrestricted 0.0 Metagenome 3300000863 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 30 DOE Joint Genome Institute (JGI) 3300000863 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 17139194 52631 46 0 85 1 SRX1984822 Unrestricted 0.0 Metagenome 3300029563 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35635 Beijing Genomics Institute (BGI) 3300029563 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 189071692 225970 145 0 194 0 0.0 Metagenome 3300050213 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water microbial communities from Sandhills, Nebraska, United States - NSL_Border_2019_MMG DOE Joint Genome Institute (JGI) 3300050213 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.79185 -102.53404 1732106999 2604012 629 15 929 20 Unrestricted 31.19 Metagenome 3300045555 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Cordillera ecozone, Canada - Lake 13-525 Genome Quebec 3300045555 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 60.479871 -137.010954 916409973 2056212 392 76 638 137 0.0 Metagenome 3300012510 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.9.old.080610 DOE Joint Genome Institute (JGI) 3300012510 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 165446899 444412 275 26 613 48 SRX3527358 Unrestricted 0.0 Metagenome 3300040308 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_016-M-22-2-20130627-GEN-DNA1 Argonne National Laboratory 3300040308 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 5559935 16240 23 0 39 0 0.0 Metagenome 3300008406 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765701615 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008406 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 170646021 247462 146 0 180 0 0.0 Metagenome 3300002358 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 26SEP2010 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002358 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 21179874 58392 58 10 126 22 SRX1989280 Unrestricted 0.0 Metagenome 3300061659 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0244 Microbiome Insights 3300061659 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 351405425 491218 88 3 142 7 0.0 Metagenome 3300006661 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T5 (3) BES Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006661 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl .ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 31908302 58475 43 0 86 0 0.0 Metagenome 3300053091 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere DOE Joint Genome Institute (JGI) 3300053091 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121285 -123.269504 751149618 1210269 199 120 253 196 Unrestricted 23.13 Metagenome 3300031645 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from Ellis Fjord, Antarctic Ocean - #129 DOE Joint Genome Institute (JGI) 3300031645 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5958 78.1913 734660849 1362382 442 7 732 13 SRX5649648 Unrestricted 22.7 Metagenome 3300015277 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_NF_31MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015277 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 119988498 219463 4 21 7 35 SRX3922917 Unrestricted 11.05 Metagenome 3300036882 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-D DOE Joint Genome Institute (JGI) 3300036882 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0475 422440591 714741 142 14 204 16 SRX8137581 Unrestricted 15.04 Metagenome 3300008138 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764892411 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008138 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 131286902 180566 67 0 97 0 0.0 Metagenome 3300069295 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Lower Teakettle, Sierra National Forest, California, USA - TEAK_005-O-20210728-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069295 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 37.058229 -118.988578 2738486753 6498655 1368 220 2442 348 0.0 Metagenome 3300000226 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 135m DOE Joint Genome Institute (JGI) 3300000226 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 237884731 502430 178 5 330 10 Unrestricted 0.0 Metagenome 3300014083 *Microbiome Permanent Draft Fecal viral communites from wild urban brown rats in Berlin, Germany Fecal viral communites from wild urban brown rats in Berlin, Germany - Mu/10/1773 Freie University Berlin 3300014083 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 52.529611 13.401343 7119225 17191 2 0 2 0 SRX616519 0.0 Metagenome 3300020230 *Microbiome Permanent Draft Deep-sea sediment microbial communities from the Pacific Ocean trenches Deep-sea sediment microbial communities from the Mariana Trench, Pacific Ocean - CR02 JGI facility at Oak Ridge National Laboratory 3300020230 Metagenome Analysis Megahit released by Logan Peoples No Yes lpeoples@ucsd.edu Logan Peoples No Environmental Aquatic Oceanic Marine Sediment sediment 12.63117 144.72149 742005550 989962 204 0 280 0 0.0 Metagenome 3300046051 *Microbiome Permanent Draft Halite microbial communities from Atacama Desert, Chile Halite microbial communities from Alma, Atacama Desert, Chile - AL4 Novogene 3300046051 Metagenome Analysis metaWRAP v. 1.3.2 No Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Halite Rock-dwelling (endoliths) Unclassified Halite -23.076 -67.982 168422646 202960 16 2 26 1 0.0 Metagenome 3300028799 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123 DOE Joint Genome Institute (JGI) 3300028799 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.920406 -106.94828662 923332225 2320507 437 16 783 22 SRX5354618 Unrestricted 10.6 Metagenome 3300002193 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC3b day 30 University of Sao Paulo, Virginia Bioinformatics Institute 3300002193 Metagenome Analysis SoapDeNovo released per PI's request No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 75159997 211746 7 0 20 8 0.0 Metagenome 3300048589 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Sediment microbial communities from brackish wetlands in San Jose, California, USA - ROC7_2 DOE Joint Genome Institute (JGI) 3300048589 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Intertidal zone Marine Salt marsh sediment Sediment 37.427598 -121.938678 2543542315 3575978 775 72 1040 104 Unrestricted 22.57 Metagenome 3300026117 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3635_2500 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026117 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic 1.4995 -36.9978 79308193 254151 68 26 63 45 SRX2753928 Unrestricted 0.0 Metagenome 2027040000 *Microbiome Permanent Draft Wastewater viral communities from wastewater treatment facility in Singapore Wastewater viral communities from wastewater treatment facility in Singapore - AD-no assembly University of Illinois, Urbana-Champaign 2027040000 Metagenome Analysis not assembled released per JGI data release policy No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Wastewater Dissolved organics (anaerobic) Nutrient removal Unclassified Wastewater 1.332 103.756 197271130 563069 7 0 2 0 0.0 Metagenome 3300047572 *Microbiome Permanent Draft Floating fern leaf microbial communities from various locations Floating fern leaf microbial communities from Tehran, Iran - 1080_IRRI DOE Joint Genome Institute (JGI) 3300047572 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dave.armitage@gmail.com David Armitage No Host-associated Plants Phylloplane/Leaf Phyllosphere Endophytes Leaf 35.6963 51.3871 36954312 41498 13 3 16 6 Unrestricted 697.53 Metagenome 3300030434 *Microbiome Permanent Draft Laboratory enrichment broth microbial communities from Maryland, USA Laboratory enrichment broth microbial communities from Maryland, USA - UPB3 U.S. Food and Drug Administration (FDA) 3300030434 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Lab enrichment Unclassified Defined media Unclassified Laboratory enrichment broth 13847846 17876 22 0 53 2 0.0 Metagenome 3300070482 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_031-O-20200106-COMP-DNA1 Battelle Memorial Institute 3300070482 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 19.553624 -155.319191 3.64-3.83 41065981 122116 90 5 147 4 0.0 Metagenome 3300069400 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_004-M-20160809-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069400 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 15265492 45422 54 4 122 6 0.0 Metagenome 3300042956 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-414 Genome Quebec 3300042956 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 51.316192 -102.87704 1225198185 2606591 452 49 706 115 0.0 Metagenome 3300046763 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Illinois River, Illinois, USA - NASQAN2011_090 DOE Joint Genome Institute (JGI) 3300046763 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 39.7033 -90.6454 10874342 33914 74 16 107 23 Unrestricted 0.0 Metagenome 3300000906 *Microbiome Permanent Draft Comparative metagneomics of mesophilic and thermophilic cellulose-adapted consortia Cellulose adapted compost microbial communities from Newby Island Compost Facility, Milpitas, CA, USA - Passage2 60B DOE Joint Genome Institute (JGI) 3300000906 Metagenome Analysis Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Solid waste Composting Bio- and green waste (BGW) Unclassified Feedstock adapted compost 37.840898 -122.289614 43984828 59283 38 0 52 0 SRX3782535 Unrestricted 0.0 Metagenome 3300041999 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 DOE Joint Genome Institute (JGI) 3300041999 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.8942 -103.685 482318322 1224647 653 49 1219 83 SRX14827101 Unrestricted 7.14 Metagenome 3300049289 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MB15 DOE Joint Genome Institute (JGI) 3300049289 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 167801082 408861 398 14 769 20 Unrestricted 16.0 Metagenome 3300011812 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01205 Weill Cornell Medical College 3300011812 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.84 -73.91 35225426 47015 13 0 20 0 SRX823160 0.0 Metagenome 3300017827 *Microbiome Permanent Draft Archevir - Metagenome and diversity of hyperhalophilic archaeoviruses Saline water viral communities from hypersaline pond near village of Ngallou, Senegal - P9 GATC-Biotech AG, Konstanz, Germany 3300017827 Metagenome Analysis Idba_ud No Yes sroux@lbl.gov Simon Roux Yes 26472517 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified saline water 14.0491 -16.7624 1892334 3224 0 0 0 0 0.0 Metagenome 3300015311 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_22AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015311 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 168304519 302902 37 159 76 286 SRX3925937 Unrestricted 7.56 Metagenome 3300039041 *Microbiome Draft Cave microbial communities from Monte Cristo cave, Diamantina, Brazil Cave microbial communities from Monte Cristo cave, Diamantina, Brazil - P1b The Keck Facility at the Josephine Bay Paul Center 3300039041 Metagenome Analysis megahit v. 1.2.2 released by JGI data releasing policy No Yes amandagbendia@gmail.com Amanda Bendia No Environmental Terrestrial Unclassified Cave Unclassified Cave wall -18.29644 -43.55931 243985298 306651 78 6 121 6 0.0 Metagenome 3300019379 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS842 IDBA reassembly renamed Marine Biological Laboratory 3300019379 Metagenome Analysis IDBA released by JGI data releasing policy No Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow marine hydrothermal vent 18.375164 -81.797067 6.26 23046372 29272 8 0 15 0 0.0 Metagenome 3300020362 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_A100001234 (ERX556035-ERR599049) CEA Genoscope 3300020362 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 22.1283 38.1967 501489763 1206406 396 20 614 42 0.0 Metagenome 3300027641 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027641 Metagenome Analysis spades v. 3.11.1 Yes Yes loy@microbial-ecology.net; Michael.Pester@dsmz.de Alexander Loy; Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.1318 11.881 427612143 824196 126 4 231 2 Unrestricted 0.0 Metagenome 3300018839 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - late stage, 18 hrs after wetting v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018839 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 255985331 488856 253 9 350 15 0.0 Metagenome 7000000194 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158337416 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000194 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 117758500 190328 0 0 0 0 0.0 Metagenome 3300023173 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413AT metaG (version 2) DOE Joint Genome Institute (JGI) 3300023173 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1337132650 2481872 742 44 1059 101 SRX4074131 Unrestricted 24.36 Metagenome 3300047168 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Western Region, Iceland - Sphagnum teres C_TE_ICE DOE Joint Genome Institute (JGI) 3300047168 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 1278391920 1998820 498 149 766 219 SRX14786677 Unrestricted 10.84 Metagenome 3300070868 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_038-O-20170801-COMP-DNA1 Battelle Memorial Institute 3300070868 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 46.232249 -89.534573 3.61-4.53 53614953 158098 111 14 251 13 0.0 Metagenome 3300041033 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - T3D7 IDBA-UD 60x Baseclear 3300041033 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 230986766 362882 123 12 212 21 0.0 Metagenome 3300028263 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen5, Rep 2, Chloramphenicol (External Submission) DOE Joint Genome Institute (JGI) 3300028263 Metagenome Analysis No Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 192972859 240538 20 12 51 20 Unrestricted 0.0 Metagenome 3300043503 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 043-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043503 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9272 -106.9804 379318607 987366 522 28 936 45 Unrestricted 6.87 Metagenome 3300023085 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_5_MG DOE Joint Genome Institute (JGI) 3300023085 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Inlet Marine Unclassified seawater 48.64 -123.5 472503630 1459150 612 66 1072 123 SRX4480133 Unrestricted 9.17 Metagenome 3300014512 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 7_B Beijing Genomics Institute (BGI) 3300014512 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 29109429 30676 20 0 26 0 ERX491309 0.0 Metagenome 3300049267 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA18 DOE Joint Genome Institute (JGI) 3300049267 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 434251522 1090069 461 7 892 15 Unrestricted 7.73 Metagenome 3300010376 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama - MetaG Plot_28 DOE Joint Genome Institute (JGI) 3300010376 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes cpan@ou.edu Chongle Pan No Environmental Terrestrial Tropical forest Soil Bulk soil Tropical forest soil 9.1086 -79.8436 7553610374 15575499 2669 224 4669 374 SRX2525756 Unrestricted 0.0 Metagenome 3300036468 *Microbiome Permanent Draft Hot spring microbial communities from different geyser basins in Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Norris-Mammoth Corridor, Yellowstone National Park, WY, United States - NMC.RSN_S DOE Joint Genome Institute (JGI) 3300036468 Metagenome Analysis metaspades v. 3.13.0 Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Near-boiling (>90C) Thermal springs Sediment hot spring sediment 44.754 -110.7257 94375246 150434 79 3 95 1 SRX8735303 Unrestricted 582.23 Metagenome 3300034630 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Lyngbya sp. HA4199-MV5 and co-occurring heterotrophs from soil from Ahupuaa O Kahana State Park, Hawaii, United States - 20181012_27A DOE Joint Genome Institute (JGI) 3300034630 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Unclassified Soil Unclassified Soil 21.542 -157.884 56655633 58060 12 0 21 0 SRX8237525 Unrestricted 195.81 Metagenome 3300007537 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_A_D1_MG DOE Joint Genome Institute (JGI) 3300007537 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4958 -122.1331 818467241 1488927 864 5 1414 15 SRX2753769 Unrestricted 0.0 Metagenome 3300007811 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Slide_host_7_15 DOE Joint Genome Institute (JGI) 3300007811 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jim.fredrickson@pnnl.gov, jim.fredrickson@pnnl.gov; binskeep@montana.edu Jim Fredrickson, Jim Fredrickson; William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.7315 -110.7113 3 71804540 225959 46 0 89 0 SRX2753790 Unrestricted 0.0 Metagenome 3300040286 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Atlantic Neotropical, PR, USA - GUAN_006-M-20161005-COMP-DNA1 Battelle Memorial Institute 3300040286 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 17.96955 -66.8687 6579565 18519 31 1 75 6 0.0 Metagenome 3300005327 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG DOE Joint Genome Institute (JGI) 3300005327 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 4377571655 11384181 3723 384 6027 686 SRX2740083 Unrestricted 0.0 Metagenome 3300070815 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Arizona, USA - SRER_005-M-20180801-COMP-DNA1 3300070815 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 221477 768 10 2 13 5 0.0 Metagenome 3300031629 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from Ellis Fjord, Antarctic Ocean - #80 DOE Joint Genome Institute (JGI) 3300031629 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5958 78.1913 806100132 1627096 263 114 345 177 SRX5649552 Unrestricted 15.11 Metagenome 3300040072 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Mid-Atlantic, VA, USA - BLAN_033-M-20170714-COMP-DNA1 Battelle Memorial Institute 3300040072 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Farm Terrestrial soil 39.06026 -78.07164 14458233 44013 76 8 124 6 0.0 Metagenome 3300044567 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TST10 DOE Joint Genome Institute (JGI) 3300044567 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.414 82505994 121004 131 1 158 1 SRX12687723 Unrestricted 151.03 Metagenome 3300039133 *Microbiome Permanent Draft Freshwater microbial communities from various watersheds in Southwestern British Columbia, Canada Freshwater microbial communities from Southwestern British Columbia, Canada - UPL_101 University of British Columbia 3300039133 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 49.0 -123.0 7578618 17793 29 0 35 0 0.0 Metagenome 3300047447 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere DOE Joint Genome Institute (JGI) 3300047447 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5882 -123.194 331905770 545889 172 27 314 34 Unrestricted 17.64 Metagenome 3300059579 *Microbiome Permanent Draft Soil microbial communities from Blodgett Forest Research Station, California, USA Soil microbial communities from Blodgett Forest Research Station, California, USA - BWE201406033C8090 DOE Joint Genome Institute (JGI) 3300059579 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.912 -120.6612 1520297245 2617716 546 39 982 55 Unrestricted 43.08 Metagenome 3300043124 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10WB15 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043124 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 30594210 88600 120 3 216 10 SRX8379129 Unrestricted 10.73 Metagenome 3300032795 *Microbiome Permanent Draft Lake microbial communities from Canada Sediment microbial communities from the Boreal Shield Ecozone, Canada - top sediment 06-126 Genome Quebec 3300032795 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Sediment 48.99124 -74.02811 726553820 1650657 467 13 769 20 0.0 Metagenome 3300041889 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_495 MetaG AgResearch, New Zealand, Mosgeil 3300041889 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1188731992 2274754 249 29 854 38 0.0 Metagenome 3300032003 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1 DOE Joint Genome Institute (JGI) 3300032003 Metagenome Analysis spades v. 3.13.0 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 1355893536 3466757 1171 21 2183 35 SRX5809563 Unrestricted 7.48 Metagenome 3300021409 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Coastal seawater microbial communities from Marineland, Florida, United States - SWPA TP0 #1 DOE Joint Genome Institute (JGI) 3300021409 Metagenome Analysis spades v. 3.11.1-check Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6703 -81.2145 150566859 204837 101 0 99 1 SRX3985500 Unrestricted 59.73 Metagenome 3300001845 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from the Cayman Rise, Cayman Islands Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Shallow Sites - lt1kb 3300001845 Metagenome Analysis IDBA_UD k52-k92 step10 - contigs less than 1kb released by JGI data releasing policy No Yes Gregory Dick, Sunit Jain No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 18.35 -81.85 117675588 292618 408 13 685 37 0.0 Metagenome 3300025702 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC109_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025702 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 22.28 114.17 520188022 971985 483 5 657 7 SRX2338869 Unrestricted 0.0 Metagenome 3300055511 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.3C.8 SIP fraction DOE Joint Genome Institute (JGI) 3300055511 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 246211391 466107 122 2 237 3 Unrestricted 13.65 Metagenome 3300018083 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1 DOE Joint Genome Institute (JGI) 3300018083 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 .05 1158234355 2449272 738 26 1355 41 SRX3939604 Unrestricted 5.07 Metagenome 3300036861 *Microbiome Permanent Draft Soil microbial communities from fields in the western Corn Belt region, Nebraska, United States Soil microbial communities from fields in the western Corn Belt region, Nebraska, United States - Switchgrass plot 312, no N, depth 4 DOE Joint Genome Institute (JGI) 3300036861 Metagenome Analysis metaspades v. 3.13.0 Yes Yes marty.schmer@ars.usda.gov Marty Schmer No Environmental Terrestrial Agricultural land Soil Unclassified soil 41.1677 -96.4108 2383023588 3608066 608 16 1039 19 SRX8296382 Unrestricted 14.92 Metagenome 3300070250 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Bartlett Experimental Forest, New Hampshire, USA - BART_042-O-20170613-COMP-DNA1 3300070250 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 1596579 5035 23 1 47 3 0.0 Metagenome 3300026854 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 48 (SPAdes) DOE Joint Genome Institute (JGI) 3300026854 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 53135859 121003 62 0 105 0 SRX4340970 Unrestricted 0.0 Metagenome 3300014752 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 591_12M Beijing Genomics Institute (BGI) 3300014752 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 80201003 101701 33 0 48 0 ERX491251 0.0 Metagenome 3300013265 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100770 University of Pennsylvania 3300013265 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17251502 42343 28 5 64 15 SRX756082 0.0 Metagenome 3300005834 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 DOE Joint Genome Institute (JGI) 3300005834 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 2676810325 8020550 2309 195 3825 390 SRX2782749 Unrestricted 0.0 Metagenome 3300070461 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_021-O-20160727-COMP-DNA1 3300070461 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 72693805 217272 173 26 348 44 0.0 Metagenome 3300001796 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_QV12A DOE Joint Genome Institute (JGI) 3300001796 Metagenome Analysis Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 99192175 207238 122 11 218 14 SRX3321853 Unrestricted 0.0 Metagenome 3300013218 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100503 University of Pennsylvania 3300013218 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 16285751 43233 27 0 45 0 SRX756495 0.0 Metagenome 3300069313 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_002-M-20140117-COMP-DNA1 re-annotation Argonne National Laboratory 3300069313 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 26337880 70274 58 2 115 5 ERX2133932 0.0 Metagenome 3300002832 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A1w-11 DOE Joint Genome Institute (JGI) 3300002832 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 1408207 4663 48 0 69 0 SRX1991129 Unrestricted 0.0 Metagenome 3300029650 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37284 Beijing Genomics Institute (BGI) 3300029650 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 96150901 123746 86 1 124 1 0.0 Metagenome 3300013772 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M University of Tennessee 3300013772 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 1183682747 2347806 302 7 462 21 SRX710583 0.0 Metagenome 3300011128 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.02 Toyama Prefectural University 3300011128 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Unclassified marine 37.04027 137.37583 8.2 44992840 114317 8 0 11 3 0.0 Metagenome 3300009692 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaG DOE Joint Genome Institute (JGI) 3300009692 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 35.92 139.63 1144776348 1989645 1108 9 1713 14 SRX2338885 Unrestricted 0.0 Metagenome 3300042836 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149 NMDC pilot DOE Joint Genome Institute (JGI) 3300042836 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92045766 -106.94845279 1293480527 3178178 734 17 1384 29 SRX5354690 0.0 Metagenome 3300040210 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 081B_R1 University of Maryland 3300040210 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.67755556 27.09225 9860114 13262 30 0 56 1 0.0 Metagenome 3300009079 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 DOE Joint Genome Institute (JGI) 3300009079 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 1222802867 2375038 1257 159 1857 290 SRX2753550 Unrestricted 0.0 Metagenome 3300041792 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - A_33_wk_3 DOE Joint Genome Institute (JGI) 3300041792 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9753 -106.978 142290489 475191 280 17 502 24 SRX14808357 Unrestricted 5.46 Metagenome 3300021582 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - E2014-0044-100LTR University of Michigan 3300021582 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified freshwater lake 41.827283 -83.195217 118414801 220879 40 19 79 38 0.0 Metagenome 3300045499 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-550 Genome Quebec 3300045499 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.403098 -121.085132 1290520931 2871551 522 125 871 203 0.0 Metagenome 3300035215 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2013_1000m DOE Joint Genome Institute (JGI) 3300035215 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 50.0 -145.0 459879356 1144276 401 45 699 69 SRX8188379 Unrestricted 13.5 Metagenome 3300030209 *Microbiome Permanent Draft Chicken ceca and crop associated microbial communities from Bologna, Italy Chicken ceca associated microbial communities from Bologna, Italy - LSA_XT_63 University of Bologna 3300030209 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Birds Large intestine Digestive system Ceca Chicken ceca associated 44.26 11.28 64592800 120615 59 0 91 0 ERX1801756 0.0 Metagenome 3300017693 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_03OCT2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017693 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 309211484 581660 179 328 271 553 SRX3927220 Unrestricted 6.57 Metagenome 2065487018 *Microbiome Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Iowa, Native Prairie soil v1 DOE Joint Genome Institute (JGI) 2065487018 Metagenome Analysis Artifact filter, partition at k=32, assemble with Velvet at k19-45, Minimus2 released based on JGI ITS No Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.0042816 -77.1012173 6.2 162260513 440379 59 0 98 0 Unrestricted 0.0 Metagenome 3300028147 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_15MAY2017_LD1 DOE Joint Genome Institute (JGI) 3300028147 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 25285292 48775 3 21 6 21 SRX5345782 Unrestricted 52.73 Metagenome 3300038854 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample24 King Abdulaziz City for Science and Technology (KACST) 3300038854 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 22.2 37.55 39201668 112108 46 0 102 0 SRX1097591 0.0 Metagenome 3300028861 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N3_4 DOE Joint Genome Institute (JGI) 3300028861 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 457851636 1195776 210 11 359 14 SRX5356663 Unrestricted 0.0 Metagenome 3300054045 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100 re-annotation DOE Joint Genome Institute (JGI) 3300054045 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 816455468 1584984 421 27 766 45 SRX3960107 0.0 Metagenome 3300013413 *Microbiome Permanent Draft Regolith bacterial community from Guaba Ridge, Luquillo Mountains, Puerto Rico Regolith bacterial community from Guaba Ridge, Luquillo Mountain, Puerto Rico enriched on smectite - SM5 University of Wisconsin, Madison 3300013413 Metagenome Analysis MetaSPAdes v3.10 released by JGI data releasing policy Yes Yes snapieralski@wisc.edu Stephanie Napieralski No Engineered Lab enrichment Unclassified Unclassified Unclassified Regolith 18.28 -65.79 72877730 98155 26 0 34 0 0.0 Metagenome 3300038429 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P8_D10 DOE Joint Genome Institute (JGI) 3300038429 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 603699850 826601 189 0 258 0 SRX9472175 Unrestricted 39.57 Metagenome 7000000581 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 160380657 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000581 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 86143 200 0 0 0 0 SRX023027, SRX023026 0.0 Metagenome 2149837022 *Microbiome Permanent Draft Human fecal microbial communities from the University of Arizona, for HMP training Human fecal microbial communities from the University of Arizona (HMP) - UAf2 Chinese National Human Genome Center, Beijing 2149837022 Metagenome Analysis released per JGI data release policy No Yes mbsulli@email.arizona.edu, mbsulli@gmail.com Matthew Sullivan No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 32.23 -110.95 71414456 85857 334 0 500 0 0.0 Metagenome 3300046686 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-C2 20-24 DOE Joint Genome Institute (JGI) 3300046686 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0434 543122038 853445 209 4 335 2 Restricted 12.14 Metagenome 3300039206 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - ADO2 Michigan State University 3300039206 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 46.0 -168.0 34524275 92661 1 0 7 1 0.0 Metagenome 3300049143 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S29_B_D89 hydrophobic DOE Joint Genome Institute (JGI) 3300049143 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 263861953 436586 139 3 232 5 Unrestricted 24.08 Metagenome 3300006568 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2 of subject 765074482 replicate 2 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006568 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; snayfach@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 185956004 231120 166 0 252 0 0.0 Metagenome 3300040699 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Environmental Research Center, Mid-Atlantic, MD, USA - SERC_045-M-20170711-COMP-DNA1 Battelle Memorial Institute 3300040699 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89008 -76.56001 1030429 3027 20 3 35 4 0.0 Metagenome 3300034117 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jun2014-rr0124 DOE Joint Genome Institute (JGI) 3300034117 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1174056606 2239118 487 63 659 85 SRX7622090 Unrestricted 13.7 Metagenome 3300022188 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-10-11_MG DOE Joint Genome Institute (JGI) 3300022188 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.0114 -110.5931 369060282 766490 321 0 524 2 SRX3982197 Unrestricted 27.26 Metagenome 3300007034 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764042746 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007034 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 23944083 42910 14 0 26 0 0.0 Metagenome 3300028609 *Microbiome Permanent Draft Microbial communities from Yellowstone National Park hot springs 2017 Hot spring sediment microbial communities from Rabbit Creek Outflow 2, Yellowstone National Park, USA - 170626B University of Minnesota 3300028609 Metagenome Analysis SPAdes v. 3.11.0 released by JGI data releasing policy Yes Yes trinityh@umn.edu Trinity Hamilton No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.5205 -110.8126 9.329 195353357 412629 106 2 153 2 0.0 Metagenome 3300000282 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM232 Beijing Genomics Institute (BGI), Macrogen 3300000282 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 129229748 235946 473 2 669 0 0.0 Metagenome 3300005563 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 DOE Joint Genome Institute (JGI) 3300005563 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 5773657891 15231716 4223 366 6905 662 SRX2783763 Unrestricted 0.0 Metagenome 3300025229 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025229 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 115762257 150982 107 0 98 0 SRX2770674 Unrestricted 0.0 Metagenome 3300036826 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_Dec_plot1_rep1 DOE Joint Genome Institute (JGI) 3300036826 Metagenome Analysis metaspades v. 3.13.0 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6539 -80.6288 1953106405 3051019 461 9 813 13 SRX8181038 Unrestricted 14.64 Metagenome 3300044640 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME19Jun2015-rr0932 DOE Joint Genome Institute (JGI) 3300044640 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 953464301 1406659 320 47 367 66 Unrestricted 26.23 Metagenome 3300031963 *Microbiome Permanent Draft Freshwater fungal communities from various locations Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116 DOE Joint Genome Institute (JGI) 3300031963 Metagenome Analysis spades v. 3.13.0 Yes Yes tyjames@umich.edu Timothy Y. James No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.7464 -83.3444 2537014324 5364338 1033 174 1447 307 SRX6420476 Unrestricted 24.74 Metagenome 7000000178 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159510762 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000178 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 57845251 85706 0 0 0 0 0.0 Metagenome 3300064824 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 681 in Dapp, Alberta, Canada - S00JY_0191 Microbiome Insights 3300064824 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 54.22361285 -113.5355333 126801145 185322 67 1 91 4 0.0 Metagenome 3300042313 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Mar2013s1D0-rr0595 DOE Joint Genome Institute (JGI) 3300042313 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 655998957 1023755 137 92 170 103 Unrestricted 18.99 Metagenome 3300022571 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 6 Selected contigs with viral hallmark genes Autonomous University of Barcelona 3300022571 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 1492463 2160 0 0 0 0 0.0 Metagenome 3300014685 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00236 Weill Cornell Medical College 3300014685 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.82 -73.95 40803012 63312 26 0 32 0 SRX822215 0.0 Metagenome 3300025909 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025909 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 2758755550 6194949 1267 152 2190 245 SRX2740083 Unrestricted 0.0 Metagenome 3300070426 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Mountain Lake Biological Station, Virginia, USA - MLBS_006-O-20180612-COMP-DNA1 3300070426 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 12128246 36894 57 11 118 16 0.0 Metagenome 3300002805 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2w-11 DOE Joint Genome Institute (JGI) 3300002805 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 402511 1338 27 0 39 0 SRX1991148 Unrestricted 0.0 Metagenome 3300022449 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1OPP1 JM4 AGRF 3300022449 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 46480465 84180 30 0 38 0 0.0 Metagenome 3300003970 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Enrichment cultures from Lake Fryxell 39872 University of Michigan 3300003970 Metagenome Analysis IDBA-UD v1.1.1 released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lentic Freshwater Unclassified Freshwater -77.611214 163.119356 83774997 125129 76 1 78 1 0.0 Metagenome 3300000151 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 53 01/11/11 200m DOE Joint Genome Institute (JGI) 3300000151 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 165425195 299902 124 2 194 2 Unrestricted 0.0 Metagenome 3300014959 *Microbiome Permanent Draft Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0148 : 4 days incubation Battelle Memorial Institute, Gulf Coast Restoration Organization 3300014959 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Marine 63.43 10.43 161623066 295742 87 8 154 18 0.0 Metagenome 3300023721 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_138A University of California, Irvine 3300023721 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 130445349 129943 17 0 20 0 0.0 Metagenome 3300028415 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E6 #831 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028415 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 210071580 386701 192 30 295 40 SRX3241662 Unrestricted 0.0 Metagenome 3300008383 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 764042746 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008383 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 98181750 127437 65 0 90 0 0.0 Metagenome 3300006755 *Microbiome Permanent Draft Agricultural soil microbial communities from Utah and Georgia to study Nitrogen management Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter DOE Joint Genome Institute (JGI) 3300006755 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jeanette.norton@usu.edu Jeanette Norton No Environmental Terrestrial Agricultural land Soil Unclassified Agricultural soil 33.8834 -83.4195 3270200477 7661283 3603 303 6177 632 SRX2924237 Unrestricted 0.0 Metagenome 3300037518 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_091317_90_104 DOE Joint Genome Institute (JGI) 3300037518 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2465054109 3758709 891 12 1427 18 SRX9163109 Unrestricted 12.7 Metagenome 3300013979 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00195 Weill Cornell Medical College 3300013979 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.61 -74.0 11473030 13562 8 1 18 3 SRX822174 0.0 Metagenome 3300028468 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_26JUN2017_LD1 DOE Joint Genome Institute (JGI) 3300028468 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 40224480 76728 5 21 3 50 SRX5345798 Unrestricted 25.32 Metagenome 3300024992 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_500_biof (SPAdes) DOE Joint Genome Institute (JGI) 3300024992 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 490734981 617734 143 296 151 28 SRX2770511, SRX2770512 Unrestricted 0.0 Metagenome 3300049031 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - D24_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049031 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 389476942 864555 375 20 805 31 Unrestricted 0.0 Metagenome 3300037565 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - ARW7_20151111 DOE Joint Genome Institute (JGI) 3300037565 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 285390129 429738 164 6 208 6 SRX9140279 Unrestricted 45.72 Metagenome 3300031806 *Microbiome Permanent Draft Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP1 DOE Joint Genome Institute (JGI) 3300031806 Metagenome Analysis spades v. 3.13.0 Yes Yes rlsimister@gmail.com Rachel Simister No Environmental Aquatic Lake Freshwater Sediment sediment -2.7726 121.4938 663874641 1428906 647 2 1290 2 SRX6422543 Unrestricted 12.39 Metagenome 3300025735 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025735 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 600849187 1111532 457 24 644 36 SRX3203372 Unrestricted 0.0 Metagenome 3300037359 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 10-14 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037359 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0469 1001026189 1941647 457 19 759 48 SRX4415318, SRX8127806 Unrestricted 0.0 Metagenome 3300002563 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-312 DOE Joint Genome Institute (JGI) 3300002563 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.28381 -156.5985 324880457 680263 239 0 443 3 SRX1990915 Unrestricted 0.0 Metagenome 3300022229 *Microbiome Permanent Draft Aerobic methanotrophic bioreactor microbial communities at MBL, Massachusetts, USA Aerobic methanotrophic bioreactor microbial communities at MBL, Massachusetts USA - Cycled 1 Individual assembly Marine Biological Laboratory 3300022229 Metagenome Analysis MegaHit v.1.0.6 released by JGI data releasing policy No Yes nuria.fgonzalez@gmail.com Nuria Fernandez Gonzalez No Engineered Bioreactor Unclassified Aerobic Unclassified Bioreactor 41.5265 -70.6731 32969211 38354 10 1 11 1 0.0 Metagenome 3300064822 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 681 in Dapp, Alberta, Canada - S00JY_0119 Microbiome Insights 3300064822 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 54.22361285 -113.5355333 5031847 7737 14 0 31 0 0.0 Metagenome 3300000819 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 28JUN2007 epilimnion v4 (version 4) DOE Joint Genome Institute (JGI) 3300000819 Metagenome Analysis released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 1300785 1382 0 0 0 0 Unrestricted 0.0 Metagenome 3300029358 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 046_3_12_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029358 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 217681282 288162 257 3 337 2 0.0 Metagenome 3300007032 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T18 (3) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300007032 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 51388694 106133 54 0 112 0 0.0 Metagenome 3300000284 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM242 Beijing Genomics Institute (BGI), Macrogen 3300000284 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 62465878 78696 191 0 248 0 0.0 Metagenome 3300070246 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Bartlett Experimental Forest, New Hampshire, USA - BART_036-O-20160727-COMP-DNA1 3300070246 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 2067261 7573 14 3 31 9 0.0 Metagenome 3300037046 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Coal bed water microbial communities from the Powder River Basin, Montana, United States - FG11 DOE Joint Genome Institute (JGI) 3300037046 Metagenome Analysis metaspades v. 3.13.0 Yes Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Aquatic Groundwater Deep subsurface Coalbed methane well water coal bed water 45.4351 -106.3918 841640667 1046337 332 9 471 10 SRX8395082 Unrestricted 17.92 Metagenome 3300026183 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026183 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Pond water 37.4972 -122.1293 255094173 560524 246 40 315 75 SRX3203255 Unrestricted 0.0 Metagenome 3300014017 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01305 Weill Cornell Medical College 3300014017 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.87 -73.83 19130048 36093 8 0 15 0 SRX823245 0.0 Metagenome 3300025571 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-1-D (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025571 Metagenome Analysis spades v. 3.11.1 Yes Yes jsvander@ucdavis.edu Jean VanderGheynst Yes 27981239 Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 349396572 512184 202 10 234 18 SRX2557212 Unrestricted 0.0 Metagenome 3300071097 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from North Sterling, Colorado, USA - STER_034-M-20160817-COMP-DNA1 3300071097 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Agricultural land Soil 1708590 6386 21 0 32 0 0.0 Metagenome 3300022909 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (version 2) DOE Joint Genome Institute (JGI) 3300022909 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 718566103 1355339 275 36 528 55 SRX4068469 Unrestricted 32.6 Metagenome 3300012236 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01159 Weill Cornell Medical College 3300012236 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.68 -73.91 21080896 30986 9 0 18 0 SRX823114 0.0 Metagenome 3300021360 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2016_2, 0.2 Toyama Prefectural University 3300021360 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Sediment marine 37.54164 137.93975 40161855 102536 24 0 44 1 0.0 Metagenome 3300035127 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D1105M02 DOE Joint Genome Institute (JGI) 3300035127 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0386 1104811089 2530309 898 28 1553 48 SRX8255823 Unrestricted 6.63 Metagenome 3300031720 *Microbiome Permanent Draft Hardwood forest soil microbial communities from various locations in the United States Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515 DOE Joint Genome Institute (JGI) 3300031720 Metagenome Analysis spades v. 3.12.0 Yes Yes jdraff@indiana.edu Jonathan Raff No Environmental Terrestrial Temperate forest Soil Bulk soil hardwood forest soil 39.0844 -86.4705 4526646684 11108060 1820 48 3275 85 SRX5360347 Unrestricted 7.21 Metagenome 3300029519 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI012175-89 Beijing Genomics Institute (BGI) 3300029519 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 169205247 219783 133 0 198 0 0.0 Metagenome 3300050269 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_24 DOE Joint Genome Institute (JGI) 3300050269 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.491 160.905 284218037 416619 26 26 37 40 SRX18235969 Restricted 37.23 Metagenome 3300025449 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Jul08 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025449 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 192293821 395976 99 64 166 98 SRX2565289 Unrestricted 0.0 Metagenome 3300005805 *Microbiome Permanent Draft Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA Oregon State University 3300005805 Metagenome Analysis IDBA-UD No Yes ottent@onid.orst.edu Timothy Otten No Environmental Aquatic Lake Freshwater Unclassified Lake 37.7330997 -97.7990663 667785101 1021511 208 78 300 96 0.0 Metagenome 3300045101 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_7_C DOE Joint Genome Institute (JGI) 3300045101 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 174446198 224331 90 1 102 2 Unrestricted 97.95 Metagenome 3300020516 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 30AUG2010 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020516 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 97773337 205254 101 21 168 27 SRX1989013 Unrestricted 0.0 Metagenome 3300029193 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002663-57 Beijing Genomics Institute (BGI) 3300029193 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 96834106 115161 59 0 84 0 0.0 Metagenome 3300050287 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_47 DOE Joint Genome Institute (JGI) 3300050287 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -75.482 159.591 511973930 718126 105 13 170 12 SRX18236970 Restricted 28.04 Metagenome 3300003390 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06.2A2a-12 DOE Joint Genome Institute (JGI) 3300003390 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 272719 953 16 3 35 4 SRX2576255 Unrestricted 0.0 Metagenome 3300037803 *Microbiome Permanent Draft Soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA Soil microbial communities from sorghum farm in Illinois, United States - CABBI19_0001 DOE Joint Genome Institute (JGI) 3300037803 Metagenome Analysis metaspades v. 3.13.0 Yes Yes adina@iastate.edu Adina Howe No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.0633 -88.2058 1813113756 3246114 745 33 1308 52 SRX9391703 Unrestricted 15.34 Metagenome 3300004021 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWB_D1 DOE Joint Genome Institute (JGI) 3300004021 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.015041 -122.501831 804550212 2204107 772 11 1570 28 SRX7142410 Unrestricted 0.0 Metagenome 3300028008 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 1D_r DOE Joint Genome Institute (JGI) 3300028008 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 591015512 1183452 257 116 398 177 SRX5172039 Unrestricted 48.03 Metagenome 3300013501 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A35_65cm_0.25M University of Tennessee 3300013501 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 323413412 758093 113 3 228 5 SRX710576 0.0 Metagenome 7000000741 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763982056 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000741 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 68178890 128280 0 0 0 0 0.0 Metagenome 3300046719 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 soil DOE Joint Genome Institute (JGI) 3300046719 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Botanical garden Soil Bulk soil Soil 44.588 -123.194 280975917 516955 211 11 387 19 Unrestricted 20.61 Metagenome 3300026075 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026075 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 4223953691 10852518 2029 132 3730 238 SRX2744973 Unrestricted 0.0 Metagenome 3300013399 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100150 University of Pennsylvania 3300013399 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 1445449 3999 4 0 7 0 SRX756382 0.0 Metagenome 3300070590 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_044-M-20190716-COMP-DNA1 Battelle Memorial Institute 3300070590 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12829 -99.243528 6.98-7.85 22632197 67118 63 2 131 6 0.0 Metagenome 3300039170 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - SI135M (SPAdes) Columbia University 3300039170 Metagenome Analysis spades v. 3.11.1 released by JGI data releasing policy Yes Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Inlet Marine Unclassified marine 48.6 -123.5 6475741 10673 0 0 0 0 0.0 Metagenome 3300022735 *Microbiome Permanent Draft Marine eukaryotic communities from various locations to study complex ecological interactions Marine eukaryotic communities from Monterey Bay, California, United States - M1_20Mar14CPVII9sort6BwellD7 DOE Joint Genome Institute (JGI) 3300022735 Metagenome Analysis spades v. 3.11.1-check Yes Yes azworden@mbari.org; twoyke@lbl.gov Alexandra Worden; Tanja Woyke No Environmental Aquatic Unclassified Marine Unclassified seawater 36.746 -122.0257 83362979 111064 19 3 28 3 Unrestricted 272.64 Metagenome 3300024994 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG16_big_fil_post_rev_8/21/14_0.65 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300024994 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 586545 1982 2 0 3 1 SRX3348162 Unrestricted 0.0 Metagenome 3300009816 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N1_0_10 DOE Joint Genome Institute (JGI) 3300009816 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380143 -119.2723688 172877432 378344 181 4 348 4 SRX2523200 Unrestricted 0.0 Metagenome 3300045836 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R DOE Joint Genome Institute (JGI) 3300045836 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 14.75 -16.85 1187850807 2026629 516 49 828 68 Unrestricted 16.57 Metagenome 3300041794 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - A_36_wk_3 DOE Joint Genome Institute (JGI) 3300041794 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9841 -106.97 138042181 397457 228 20 399 40 SRX14808352 Unrestricted 7.51 Metagenome 3300021584 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-100-LTR Downsampled Assembly University of Michigan 3300021584 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.8271 -83.1945 9.128 265521205 419429 18 39 23 75 0.0 Metagenome 3300034338 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Marine sediment microbial communities from Algarve, Portugal - SD03 Molecular Research LP (MR DNA) 3300034338 Metagenome Analysis Metawrap workflow v. 1.0.12 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Environmental Aquatic Oceanic Marine Sediment marine sediment 36.979778 -7.989111 248680 342 4 2 3 2 0.0 Metagenome 3300006916 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 DOE Joint Genome Institute (JGI) 3300006916 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes chenf@umces.edu, chenf@umces.edu; bcampb7@clemson.edu Feng Chen, Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.12 -75.25 809753694 1980314 6 1 1 1 SRX3301140, SRX2838766, SRX3301139 Unrestricted 0.0 Metagenome 3300006347 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_1000m University of Hawaii 3300006347 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes ktennessen@lbl.gov Kristin Tennessen No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 370297446 784205 533 15 802 21 0.0 Metagenome 3300011696 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00708 Weill Cornell Medical College 3300011696 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.86 -73.91 35403496 43645 13 0 19 0 SRX822675 0.0 Metagenome 3300002011 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot5-1 3300002011 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 7095546 41110 102 3 179 9 0.0 Metagenome 3300032215 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada - Lake 06-102 Genome Quebec 3300032215 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.718456 -71.765768 708217444 1437654 447 64 801 156 0.0 Metagenome 3300051223 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_RHK1_2_to_SEK1 DOE Joint Genome Institute (JGI) 3300051223 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.244 418912025 692334 222 64 300 76 Unrestricted 27.74 Metagenome 3300041070 *Microbiome Permanent Draft Contaminated soil microbial communities from Humid Pampas, Chascomus Partido, Argentina Contaminated soil microbial communities from Humid Pampas, Chascomus Partido, Argentina - L3_293 Illumina 3300041070 Metagenome Analysis Megahit v. 1.2.10 released by JGI data releasing policy No Yes valeria.imperato@uhasselt.be Valeria Imperato No Environmental Terrestrial Unclassified Soil Agricultural land Contaminated soil -35.5787 -58.0138 5352731 12298 18 1 47 3 0.0 Metagenome 3300032268 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada - Lake 06-104 Genome Quebec 3300032268 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.40963 -71.78992 459023647 914084 233 57 483 111 0.0 Metagenome 3300053113 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 endosphere DOE Joint Genome Institute (JGI) 3300053113 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121253 -123.270368 417682272 519201 55 103 65 147 Unrestricted 17.61 Metagenome 3300017938 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150 DOE Joint Genome Institute (JGI) 3300017938 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 891496706 1658011 523 10 838 21 SRX3959984 Unrestricted 15.02 Metagenome 3300054566 *Microbiome Permanent Draft Soil microbial communities from pasture in Hopland Research and Extension Center, CA, USA Soil viral communities from pasture in Hopland Research and Extension Center, CA, USA - T2-H2O-B library kit 1SPlus DOE Joint Genome Institute (JGI) 3300054566 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes trubl1@llnl.gov Gareth Trubl No Environmental Terrestrial Pasture Soil Unclassified Soil 39.00177 -123.06967 140964747 364446 76 2 186 1 Unrestricted 162.97 Metagenome 3300029759 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 050_3_11_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029759 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 190324222 228969 217 1 290 0 0.0 Metagenome 3300003126 *Microbiome Permanent Draft Human gut microbial communities from lean and obese individuals in Granada, Spain Human gut microbial communities from lean and obese individuals in Granada, Spain - Lean sample Institute of Catalysis, The Higher Council for Scientific Research (CSIC) 3300003126 Metagenome Analysis Newbler v.2.5.3 Made public because these are downloaded from Genbank No Yes mferrer@icp.csic.es Manuel Ferrer Yes 22891823 Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 37.17 -3.59 11889690 23250 27 0 44 1 0.0 Metagenome 2149837024 *Microbiome Permanent Draft Human fecal microbial communities from the University of Arizona, for HMP training Human fecal microbial communities from the University of Arizona (HMP) - UAm2 Chinese National Human Genome Center, Beijing 2149837024 Metagenome Analysis released per JGI data release policy No Yes mbsulli@email.arizona.edu, mbsulli@gmail.com Matthew Sullivan No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 32.23 -110.95 40862575 54020 95 0 169 0 0.0 Metagenome 3300046318 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_64 DOE Joint Genome Institute (JGI) 3300046318 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9802 -106.9905 498108375 1365775 1123 253 2167 368 Restricted 0.0 Metagenome 3300024219 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK06 DOE Joint Genome Institute (JGI) 3300024219 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 163252337 443163 274 11 471 30 SRX4547503 Unrestricted 6.74 Metagenome 3300038852 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample17 King Abdulaziz City for Science and Technology (KACST) 3300038852 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 20.31 38.46 13601417 35423 43 0 56 0 SRX1097583 0.0 Metagenome 3300009678 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 DOE Joint Genome Institute (JGI) 3300009678 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8898 -106.9077 791429141 1594951 581 78 1171 118 SRX2754263 Unrestricted 0.0 Metagenome 3300001216 *Microbiome Permanent Draft Permafrost soil microbial communities from Miers Valley, Antarctica Permafrost soil microbial communities from Miers Valley, Antarctica - Ant1 3300001216 Metagenome Analysis released by JGI data releasing policy No Yes kirill.krivushin@utoronto.ca Kirill Krivushin No Environmental Terrestrial Unclassified Soil Permafrost Permafrost soil -78.099535 163.850256 1241608 1244 1 0 1 0 0.0 Metagenome 3300013798 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS866 IDBA reassembly Marine Biological Laboratory 3300013798 Metagenome Analysis reassembly with IDBA-UD released by JGI data releasing policy No Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow hydrothermal vent diffuse flow 18.37 -81.798 135030515 283861 184 3 280 5 0.0 Metagenome 3300046559 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere DOE Joint Genome Institute (JGI) 3300046559 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1212 -123.2701 1157557182 1890380 343 100 567 120 Unrestricted 13.52 Metagenome 3300048081 *Microbiome Permanent Draft Marine and freshwater sediment microbial communities from various locations Freshwater sediment microbial communities from Lake Huron, Michigan, United States - Straits 3 (F) DOE Joint Genome Institute (JGI) 3300048081 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes smtechtm@mtu.edu Stephen Techtmann No Environmental Aquatic Sediment Freshwater Unclassified Freshwater sediment 45.7051 -84.521 790305714 1933636 571 15 947 25 Unrestricted 9.33 Metagenome 3300011143 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01296 Weill Cornell Medical College 3300011143 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.85 -73.86 27301700 39519 11 0 22 0 SRX823236 0.0 Metagenome 3300012027 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF 2006 #2 DOE Joint Genome Institute (JGI) 3300012027 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5627 78.1882 79462683 156058 50 1 98 1 SRX3242175 Unrestricted 0.0 Metagenome 3300046365 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA007-CHB DOE Joint Genome Institute (JGI) 3300046365 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6359 -83.4952 229043543 652265 322 15 572 31 Unrestricted 7.58 Metagenome 3300040577 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Temperate deciduous broadleaf forest soil microbial communities from Baltimore, USA - 017_R1_022417 University of Maryland 3300040577 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate deciduous broadleaf forest soil 39.49086667 -76.69043333 2073199 6806 20 4 37 6 0.0 Metagenome 3300056923 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E1L_75_77 DOE Joint Genome Institute (JGI) 3300056923 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.997158 -81.489236 931129808 1511769 521 0 901 1 Unrestricted 12.83 Metagenome 3300025188 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP2913 (SPAdes) DOE Joint Genome Institute (JGI) 3300025188 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 29.97 -23.69 119103545 226825 116 23 187 37 SRX1981965 Unrestricted 0.0 Metagenome 3300009880 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY16 University of New South Wales 3300009880 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 14699213 22435 12 0 18 0 0.0 Metagenome 3300021069 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L224-25m DOE Joint Genome Institute (JGI) 3300021069 Metagenome Analysis spades v. 3.10.1 Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.69 -93.718 511270566 1132554 558 4 932 8 SRX3984607 Unrestricted 19.29 Metagenome 3300004066 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLC_D2 DOE Joint Genome Institute (JGI) 3300004066 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.209923 -122.033409 788568303 2578092 970 9 1979 26 SRX7225232 Unrestricted 0.0 Metagenome 3300025704 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025704 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de; agrieb@mpi-bremen.de Hanno Teeling; Anissa Grieb Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 531066694 937445 295 46 399 67 SRX2999978 Unrestricted 0.0 Metagenome 3300019889 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - L2c2 DOE Joint Genome Institute (JGI) 3300019889 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.883 -106.9108 548270514 1012695 193 28 310 50 SRX3958715, SRX3958714 Unrestricted 0.0 Metagenome 3300059697 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059697 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 197254235 435971 144 15 252 20 SRX2753580 Unrestricted 0.0 Metagenome 3300035003 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Aphanothece saxicola GSE-SYN-MK-01-06B and co-occurring heterotrophs from rock surface from Grand Staircase Escalante National Monument, Utah, United States - 20181031_5A DOE Joint Genome Institute (JGI) 3300035003 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Rock surface 37.6093 -111.8978 22437006 28771 8 0 9 0 SRX8237734 Unrestricted 662.88 Metagenome 3300040790 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Salins du Lion, Vitrolles, France - D96 Genopole Toulouse Midi-Pyrenees 3300040790 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.45 5.2264 455899332 868589 391 28 762 38 0.0 Metagenome 3300020580 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M DOE Joint Genome Institute (JGI) 3300020580 Metagenome Analysis spades v. 3.10.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 2714022582 5721908 708 75 1267 107 SRX4026436 Unrestricted 14.59 Metagenome 3300043122 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Shale gas microbial communities from Fort St. John, British Columbia, Canada - PROGRESS PAD (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043122 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back shale gas 57.0 -122.0 56752834 105807 70 2 77 2 SRX8356933 Unrestricted 204.99 Metagenome 3300041778 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - A_33_wk_2 DOE Joint Genome Institute (JGI) 3300041778 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9753 -106.978 61859062 208266 190 12 327 29 SRX14808247 Unrestricted 6.27 Metagenome 3300022702 *Microbiome Finished Lab enrichment of production water microbial communities from petroleum reservoir, Carmopolis, SE, Brazil Lab enrichment of production water microbial communities from petroleum reservoir, Carmopolis, SE, Brazil - Ap1 Federal University of Rio Grande do Norte 3300022702 Metagenome Analysis Geneious v. 10.2.3 released by JGI data releasing policy No Yes lfagnez@ufrnet.br Lucymara Agnez-Lima No Environmental Terrestrial Unclassified Oil reservoir Unclassified production water from oil reservoir -10.6453 -36.9891 607662362 2504254 8150 1 16465 20 0.0 Metagenome 3300014754 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS50_0 University of Hohenheim 3300014754 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 84753789 129193 56 0 71 0 0.0 Metagenome 3300014321 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D1 DOE Joint Genome Institute (JGI) 3300014321 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.000706 -121.624306 381838146 952110 426 4 884 2 SRX7188819 Unrestricted 0.0 Metagenome 3300007793 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 763860675 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007793 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 182548218 222775 127 0 180 0 0.0 Metagenome 3300044656 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R DOE Joint Genome Institute (JGI) 3300044656 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 14.75 -16.85 674025346 1082243 273 48 434 60 Unrestricted 19.17 Metagenome 3300019867 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - U3m1 DOE Joint Genome Institute (JGI) 3300019867 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9203 -106.9495 177063815 386378 226 16 459 32 SRX3944425, SRX3944424 Unrestricted 0.0 Metagenome 3300013090 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_160m DOE Joint Genome Institute (JGI) 3300013090 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; sean.crowe@ubc.ca; jkjarett@lbl.gov Ramunas Stepanauskas; Sean Crowe; Jessica Jarett No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.0288 29.1756 589930156 1228742 521 4 918 7 SRX3571189 Unrestricted 8.69 Metagenome 3300037201 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 711 P-2-M DOE Joint Genome Institute (JGI) 3300037201 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0472 1175368194 2250748 360 19 674 28 SRX8145674 Unrestricted 8.84 Metagenome 3300007005 *Microbiome Permanent Draft Oil-impacted mangrove sediment microbial communities from Bertioga, S?o Paulo, Brasil Oil-impacted mangrove sediment microbial communities from Bertioga, S?o Paulo, Brasil - Pool_F1 Molecular Research LP (MR DNA) 3300007005 Metagenome Analysis SPAdes 3.6.2 released per JGI data release policy No Yes sandertarci@yahoo.com.br Sousa, Sanderson Sousa No Environmental Aquatic Unclassified Sediment Unclassified Sediment -23.896944 -46.207778 354263 334 0 0 0 0 0.0 Metagenome 3300026852 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 62 (SPAdes) DOE Joint Genome Institute (JGI) 3300026852 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 24305883 60571 55 0 93 0 SRX4341286 Unrestricted 0.0 Metagenome 3300002834 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Cornitermes sp. P4 segment gut microbial communities from Petit-Saut dam, French Guiana - Co191P4 DOE Joint Genome Institute (JGI) 3300002834 Metagenome Analysis Yes Yes karen.rossmassler@gmail.com, brune@mpi-marburg.mpg.de Karen Rossmassler, Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 5.0626 -53.0462 1303050472 3263869 1334 120 2192 195 SRX3327950 Unrestricted 0.0 Metagenome 3300043411 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Erpe River sidechannel, Brandenburg, Germany - erpe_2019_sw_WHONDRS-S19S_0045 DOE Joint Genome Institute (JGI) 3300043411 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 52.4762 13.6259 708512545 1209439 768 125 1162 192 Unrestricted 19.36 Metagenome 3300021087 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015 DOE Joint Genome Institute (JGI) 3300021087 Metagenome Analysis spades v. 3.10.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.6907 -122.3448 1241862219 2679532 752 194 1132 325 SRX4010485 Unrestricted 23.66 Metagenome 3300003099 *Microbiome Permanent Draft Fresh water viral communities from Lake Needwood, MD Fresh water viral communities from Lake Needwood, Maryland, USA - June 2007 J. Craig Venter Institute (JCVI) 3300003099 Metagenome Analysis Made public because these are downloaded from Genbank No Yes ipagani@lbl.gov Spiro,D., Ionna Pagani No Environmental Aquatic Lentic Freshwater Unclassified Fresh water 39.121 -77.129 2568096 9425 22 11 34 12 0.0 Metagenome 3300043676 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 400-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043676 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9759 -107.0638 743127664 1875928 442 23 771 39 Unrestricted 6.89 Metagenome 3300009694 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW1_MetaG DOE Joint Genome Institute (JGI) 3300009694 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 35.92 139.63 1193378245 2049768 1058 13 1703 18 SRX2157902 Unrestricted 0.0 Metagenome 3300005832 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.41_BBB Oregon Health and Science University (OHSU) 3300005832 Metagenome Analysis unassembled released per JGI data release policy No Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Unclassified Sediment Unclassified sediment (intertidal) 46.28551 -124.05187 1381787397 2337843 851 6 1426 19 0.0 Metagenome 3300001331 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-5cm)- 6 month illumina University of Tennessee 3300001331 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 37181636 205039 313 31 505 61 0.0 Metagenome 3300056687 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.3W.14 SIP fraction DOE Joint Genome Institute (JGI) 3300056687 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 137945799 263442 128 6 174 5 Unrestricted 11.95 Metagenome 3300026249 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from above oceans and continental USA - SDPR-005 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026249 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 63064179 183664 86 88 184 162 Unrestricted 0.0 Metagenome 3300019999 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - U2a1 DOE Joint Genome Institute (JGI) 3300019999 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9362 -106.9425 226236952 490884 222 27 458 41 SRX3948038, SRX3948037 Unrestricted 0.0 Metagenome 3300020364 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000097 (ERX556021-ERR599037) CEA Genoscope 3300020364 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 18.735 66.3895 535416511 1210934 434 1 786 4 0.0 Metagenome 3300003847 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - COGITO 998_met_11 DOE Joint Genome Institute (JGI) 3300003847 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling No Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Pelagic marine 53.9944 6.8905 183537880 435617 230 46 342 68 SRX2581073 Unrestricted 0.0 Metagenome 3300049812 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T52 S DOE Joint Genome Institute (JGI) 3300049812 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7356 -64.2741 403328805 988161 17 2 33 7 Unrestricted 0.0 Metagenome 3300012311 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100574 University of Pennsylvania 3300012311 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12997143 25296 21 4 35 5 SRX756180 0.0 Metagenome 3300011814 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01472 Weill Cornell Medical College 3300011814 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.58 -73.95 31595112 48054 19 1 37 1 SRX823362 0.0 Metagenome 3300020023 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_22AUG2016_LD2 MG DOE Joint Genome Institute (JGI) 3300020023 Metagenome Analysis spades v. 3.10.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 54637714 110528 23 54 36 118 SRX3925858 Unrestricted 44.95 Metagenome 3300009990 *Microbiome Permanent Draft Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_206 metaG DOE Joint Genome Institute (JGI) 3300009990 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes esinger@lbl.gov; twoyke@lbl.gov Esther Singer; Tanja Woyke No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass associated 30.387 -97.7301 54571558 102905 14 85 21 114 SRX3203293 Unrestricted 0.0 Metagenome 3300009425 *Microbiome Permanent Draft Marine microbial communities from western Arctic Ocean Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 DOE Joint Genome Institute (JGI) 3300009425 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh Yes 30271971 Environmental Aquatic Oceanic Marine Unclassified Marine 75.235 -150.0691 1301191765 2683308 675 226 1392 389 SRX2997313 Unrestricted 0.0 Metagenome 3300001280 *Microbiome Permanent Draft Mangrove swamp biosurfactant microbial communities from Bertioga, Sao Paulo, Brazil Mangrove swamp biosurfactant microbial communities from Bertioga, Sao Paulo, Brazil - Fosmid_H5 3300001280 Metagenome Analysis released by JGI data releasing policy No Yes dfdomingos@uol.com.br Daniela Domingos, Daniela F. Domingos No Environmental Aquatic Oceanic Marine Oil-contaminated sediment Mangrove swamp biosurfactant -23.896944 -46.207778 39395 39 0 0 0 0 0.0 Metagenome 3300031028 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2 DOE Joint Genome Institute (JGI) 3300031028 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 1294642018 2685249 524 44 858 75 SRX5355627 Unrestricted 11.17 Metagenome 7000000192 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 160603188 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000192 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 144510400 228304 0 0 0 0 0.0 Metagenome 3300070777 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_029-M-20160822-COMP-DNA1 3300070777 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 6228926 19727 28 2 60 8 0.0 Metagenome 3300027497 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027497 Metagenome Analysis spades v. 3.11.1 Yes Yes loy@microbial-ecology.net; Michael.Pester@dsmz.de Alexander Loy; Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.1318 11.881 252925958 527818 107 0 178 1 Unrestricted 0.0 Metagenome 3300024978 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_solids_1 (SPAdes) DOE Joint Genome Institute (JGI) 3300024978 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioremediation Unclassified Thiocyanate Unclassified Wastewater bioreactor -33.936637 18.478905 279004683 393703 128 17 159 23 SRX2576710 Unrestricted 0.0 Metagenome 3300014514 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 637_B Beijing Genomics Institute (BGI) 3300014514 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 26556438 34201 21 0 30 0 ERX491293 0.0 Metagenome 3300069499 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Treehaven, Great Lakes, WI, USA - TREE_001-O-20170707-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069499 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.49369 -89.58571 42605884 136262 223 15 438 26 0.0 Metagenome 3300056801 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - APS4_17C_T0 DOE Joint Genome Institute (JGI) 3300056801 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 2365778722 3157734 506 182 643 268 Unrestricted 32.96 Metagenome 3300044749 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 220-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044749 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9621 -107.03 314423465 932863 418 24 778 48 Unrestricted 6.88 Metagenome 3300011267 *Microbiome Permanent Draft Acid mine drainage microbial communities from Malanjkhand copper mine, India Acid mine drainage microbial communities from Malanjkhand copper mine, India - M16 k-mer-51 Xcelris labs Ltd 3300011267 Metagenome Analysis Metavelvet released by JGI data releasing policy No Yes psar@hijli.iitkgp.ernet.in Pinaki Sar No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage sediment 22.023017 80.732183 280472042 766031 563 73 858 121 0.0 Metagenome 3300008271 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 638754422 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008271 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 180021998 246623 153 0 175 0 0.0 Metagenome 3300012103 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #190 DOE Joint Genome Institute (JGI) 3300012103 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 74612275 139780 64 1 143 2 SRX3296256 Unrestricted 0.0 Metagenome 3300002327 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP12-I4 3300002327 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300010996 *Microbiome Permanent Draft CWC Coastal Marshes ELM11109_Aassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method A (2X250bp) Molecular Research LP (MR DNA) 3300010996 Metagenome Analysis SPAdes 3.9.0 released by JGI data releasing policy No Yes aengel1@utk.edu Annette Engel No Environmental Aquatic Wetlands Freshwater Sediment sediment 29.4542 -89.76993 71183183 124272 71 19 106 13 0.0 Metagenome 3300006980 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 158337416 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006980 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 6449364 15538 19 0 26 0 0.0 Metagenome 7000000316 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160502038 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000316 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 130484871 230069 0 0 0 0 0.0 Metagenome 3300031919 *Microbiome Permanent Draft Microbial communities from the deep biosphere Marine sediment microbial communities from the Haakon Mosby mud volcano in the Barents Sea, Arctic Ocean - PS64_332_1_GC re-assembly The Marine Biological Laboratory 3300031919 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Mud volcano Marine Sediment Sediment 72.005 14.726 153336616 357029 118 3 216 6 SRX993394, SRX550014, SRX549998 0.0 Metagenome 3300049485 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Washington, USA - columbia_2019_sed_WHONDRS-S19S_0074 DOE Joint Genome Institute (JGI) 3300049485 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 46.376172 -119.272998 306203744 694859 437 15 851 28 Unrestricted 10.15 Metagenome 3300008066 *Microbiome Permanent Draft Freshwater microbial communities from catchments in Singapore Freshwater microbial communities from catchments in Singapore - Site BH Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300008066 Metagenome Analysis clc genomics workbench 8 released per JGI data release policy No Yes erinscm@nus.edu.sg Charmaine Ng No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 1.3 103.8 108399707 298008 78 16 166 47 0.0 Metagenome 3300027104 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF024 (SPAdes) DOE Joint Genome Institute (JGI) 3300027104 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 44372948 123430 55 3 89 8 SRX2014339 Unrestricted 0.0 Metagenome 3300009571 *Microbiome Permanent Draft Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea North East Pacific Ocean microbial community - Bloomer_DOMexp_control_0hr_metagenome Massachusetts Institute of Technology 3300009571 Metagenome Analysis Greengenes NAST aligner, Ribosomal Database Project (RDP) naive Bayesian classifier released per JGI data release policy No Yes sarabc@mit.edu Sara Collins No Environmental Aquatic Epipelagic Marine Unclassified open ocean 23.214666 -159.136166 132992783 522440 622 20 1045 22 0.0 Metagenome 3300037195 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_039 - TARA_R100000501 CEA Genoscope 3300037195 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Data public in NCBI; IMGSUPP-3063 (SM 11.4.2020) Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 18.7341 66.3896 172326574 332595 47 0 68 0 0.0 Metagenome 3300044239 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from YNP geothermal spring, Wyoming, USA - Octopus_B DOE Joint Genome Institute (JGI) 3300044239 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Sediment 44.534 -110.7978 117424203 200842 71 1 89 0 Unrestricted 492.46 Metagenome 3300026673 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1116 (SPAdes) DOE Joint Genome Institute (JGI) 3300026673 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 8493578 25509 57 4 85 3 SRX1987161 Unrestricted 0.0 Metagenome 3300043110 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B5.9_Sample5.Rodeo9.Well1132 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043110 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 101009926 177524 131 0 223 0 SRX8355403 Unrestricted 121.89 Metagenome 3300029805 *Microbiome Permanent Draft North Pond 2012 Aquifer microbial communities from Mid-Atlantic Ridge, Atlantic Ocean - 1383C Deep Re-assembly of 2012 Metagenome The Marine Biological Laboratory 3300029805 Metagenome Analysis IDBA-UD v. 1.1.2 released by JGI data releasing policy No Yes tully.bj@gmail.com; lmseyler@gmail.com Benjamin Tully; Lauren Seyler Yes 26935537 Environmental Aquatic Aquifer Marine Formation fluid marine subseafloor aquifer 22.8 -46.05 10039647 12455 13 3 20 5 0.0 Metagenome 3300009449 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426 DOE Joint Genome Institute (JGI) 3300009449 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 710357738 1351312 563 116 981 209 SRX2999669 Unrestricted 0.0 Metagenome 3300026338 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen10, Rep 1 DOE Joint Genome Institute (JGI) 3300026338 Metagenome Analysis spades v. 3.11.1 Yes Yes xpeng@seoe.sc.edu; momalley@engineering.ucsb.edu Xuefeng (Nick) Peng; Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 17586148 19433 32 0 52 0 SRX5645627 Unrestricted 0.0 Metagenome 3300000505 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil ZC3D1 University of Sao Paulo 3300000505 Metagenome Analysis Newbler released per PI's request No Yes almsilva@iq.usp.br Aline Maria da Silva Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651079 -46.620668 12921476 21790 49 0 114 0 0.0 Metagenome 3300008946 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T18 (3) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2) Shell Corporation 3300008946 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 135231309 493016 177 0 352 7 0.0 Metagenome 3300042555 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Jul2015-rr0628 DOE Joint Genome Institute (JGI) 3300042555 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 937871198 1469812 333 65 405 71 Unrestricted 21.39 Metagenome 7000000067 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 370425937 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000067 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 4201754 5210 0 0 0 0 0.0 Metagenome 3300005358 *Microbiome Permanent Draft Olavius algarvensis microbial communities from Capo di Sant'Andrea bay, Elba, Italy Olavius algarvensis microbial communities from Capo di Sant'Andrea bay, Elba, Italy - Gamma1 DOE Joint Genome Institute (JGI), Max Planck Institute 3300005358 Metagenome Analysis Jazz No Yes ndubilie@mpi-bremen.de Nicole Dubilier Yes 16980956 Host-associated Annelida Unclassified Integument Unclassified Olavius algarvensis 42.807222 10.141111 5317000 2089 2 0 1 0 0.0 Metagenome 3300042369 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME22Feb2019-rr0823 DOE Joint Genome Institute (JGI) 3300042369 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 456828763 733506 165 53 222 71 Unrestricted 19.34 Metagenome 3300033109 *Microbiome Permanent Draft Characterization of microbial community from aquifers in Araihazar, Bangladesh Aquifer fluids microbial communities from Pleistocene sands, Araihazar, Bangladesh - CAT site, Well #24502 240kmer University of Manchester 3300033109 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Aquatic Groundwater Freshwater Aquifer Aquifer fluid 23.79117 90.66017 305470442 444718 227 1 334 1 0.0 Metagenome 3300036884 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-1-X1 DOE Joint Genome Institute (JGI) 3300036884 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0468 623074077 1085674 358 2 520 2 SRX8137856 Unrestricted 10.5 Metagenome 3300012277 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00200 Weill Cornell Medical College 3300012277 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.59 -73.98 57634251 76277 16 0 29 0 SRX822179 0.0 Metagenome 7000000089 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 763982056 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000089 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 15918 40 0 0 0 0 SRX024067 0.0 Metagenome 3300027080 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF009 (SPAdes) DOE Joint Genome Institute (JGI) 3300027080 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 138087900 347058 53 5 87 5 SRX2014330 Unrestricted 0.0 Metagenome 3300042387 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME01Aug2006D12-rr0857 DOE Joint Genome Institute (JGI) 3300042387 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 760531146 1194681 274 22 348 35 Unrestricted 20.39 Metagenome 3300025816 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025816 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 343079421 688887 217 85 277 142 SRX2999530 Unrestricted 0.0 Metagenome 3300046495 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvCe-F(3) 1-5 DOE Joint Genome Institute (JGI) 3300046495 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3547 19.0434 186365442 319081 131 9 244 21 Restricted 15.45 Metagenome 3300044725 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 014-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044725 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9217 -106.9526 331824630 907094 465 18 943 36 Unrestricted 8.68 Metagenome 3300005193 *Microbiome Permanent Draft Mallorca 2014 E5 E5 T11 University of Alicante 3300005193 Metagenome Analysis IDBA 1.1.1 PRE correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline 39.338015 3.051796 41701460 111940 1 0 0 0 0.0 Metagenome 3300047574 *Microbiome Permanent Draft Floating fern leaf microbial communities from various locations Floating fern leaf microbial communities from Cascades Region, Burkina Faso - 7521_IRRI DOE Joint Genome Institute (JGI) 3300047574 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dave.armitage@gmail.com David Armitage No Host-associated Plants Phylloplane/Leaf Phyllosphere Endophytes Leaf 10.6735 -5.1007 18803309 27014 8 3 10 6 Unrestricted 1537.47 Metagenome 3300030432 *Microbiome Permanent Draft Human fecal microbial community of Hadza hunter-gatherer and regular subjects from Tanzania and Italy Human fecal microbial community from subjects in taly - 20003 University of Bologna 3300030432 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 44.4950537 11.3427401 42506558 69455 51 0 109 0 0.0 Metagenome 3300070484 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_040-O-20200113-COMP-DNA1 Battelle Memorial Institute 3300070484 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 19.552827 -155.319745 3.8-4.38 9126224 30039 33 2 65 7 0.0 Metagenome 3300039680 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Atlantic Neotropical, PR, USA - GUAN_004-M-20160927-COMP-DNA1 Battelle Memorial Institute 3300039680 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 17.96955 -66.8687 53868854 148699 135 0 238 2 0.0 Metagenome 3300006198 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t30_690P_inflammed - viral_metagenome University of Texas Southwestern Medical Center 3300006198 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 48770656 85373 36 0 45 1 0.0 Metagenome 3300007287 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 158742018 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007287 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 70904893 127709 51 0 82 2 0.0 Metagenome 3300001452 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample F53-1 deep-092012 DOE Joint Genome Institute (JGI) 3300001452 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 95606249 256696 103 18 186 27 SRX1987692 Unrestricted 0.0 Metagenome 3300020478 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111) CEA Genoscope 3300020478 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 18.49 39.8483 1556856493 3642911 794 117 1444 240 0.0 Metagenome 3300021490 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-3-4_MG DOE Joint Genome Institute (JGI) 3300021490 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.0114 -110.5956 124187887 266662 196 3 325 6 SRX3982247 Unrestricted 10.98 Metagenome 3300040536 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_004-M-3-10-20130627-GEN-DNA1 Argonne National Laboratory 3300040536 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 2900122 9261 32 0 58 0 ERX2133977 0.0 Metagenome 3300005759 *Microbiome Permanent Draft Genome analysis of Scenedesmus quadricauda 10104 and associated bacterial communtity Scenedesmus quadricauda associated microbial communities from Germany - MZCH: 10104 HPI Heinrich-Pette-Institut 3300005759 Metagenome Analysis IDBA_UD1.1.1 https://www.frontiersin.org/articles/10.3389/fmicb.2017.01941/full No Yes wolfgang.streit@uni-hamburg.de Wolfgang Streit No Host-associated Algae Unclassified Green algae Unclassified Scenedesmus quadricauda associated 53.560155 9.859606 168690013 271652 55 7 53 12 0.0 Metagenome 3300042768 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N2_50_60 NMDC pilot DOE Joint Genome Institute (JGI) 3300042768 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380273 -119.2723038 78218933 211113 178 1 336 3 SRX2523173 0.0 Metagenome 3300014496 *Microbiome Permanent Draft Permafrost microbial communities from Stordalen Mire, Sweden Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG DOE Joint Genome Institute (JGI) 3300014496 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rich.270@osu.edu Virginia Rich Yes 30013118 Environmental Terrestrial Wetlands Soil Permafrost Fen 68.35 19.05 1675261529 3240329 1055 12 1805 21 SRX3580371 Unrestricted 7.88 Metagenome 3300042715 *Microbiome Permanent Draft Marine microbial symbiotic communities from Gulf of Mexico deep-sea corals Paramuricea sp. type B3 Deep-sea coral microbial communities from Gulf of Mexico, USA - 16337 AT357 S25-1 Re-assembly Ecosystem Impacts of Oil and Gas Inputs to the Gulf Consortium, The Pennsylvania State University 3300042715 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Invertebrates Coral Cnidaria Unclassified Deep-sea coral 27.587 -89.705 546710149 569186 4 20 10 76 SRX6911447 0.0 Metagenome 3300031473 *Microbiome Permanent Draft Rock endolithic microbial communities from Victoria Land, Antarctica Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord DOE Joint Genome Institute (JGI) 3300031473 Metagenome Analysis spades v. 3.12.0 Yes Yes selbmann@unitus.it Laura Selbmann Yes 32139564 Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock -75.5 159.59 1073393964 1638031 316 27 434 26 SRX5225359 Unrestricted 31.59 Metagenome 3300039984 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 037B_R1 University of Maryland 3300039984 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.20871111 24.87694444 17819833 30114 40 4 62 10 0.0 Metagenome 3300026739 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO21-E (SPAdes) DOE Joint Genome Institute (JGI) 3300026739 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 21484026 71884 57 2 114 3 SRX2575549 Unrestricted 0.0 Metagenome 3300021205 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina ""control"", cg14ic 200bp-microeukaryotes" University of New South Wales 3300021205 Metagenome Analysis IDBA-UD released by JGI data releasing policy Yes Yes e.botte@aims.gov.au; n.webster@aimsgov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Cinachyra sp. (marine sponge) -9.828217 150.820517 199281 427 0 0 0 0 0.0 Metagenome 3300013487 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -PAB009 Weill Cornell Medical College 3300013487 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -74.01 14599399 25753 23 13 18 23 SRX823437 0.0 Metagenome 2209111019 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - FP1 and FP2 (Mercury 0.2g/kg) assembled 454 Life Sciences 2209111019 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.804241 -0.372114 51063867 86552 18 0 23 0 0.0 Metagenome 3300013608 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100402 University of Pennsylvania 3300013608 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3950105 10210 6 4 19 7 SRX756255 0.0 Metagenome 3300011157 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00513 Weill Cornell Medical College 3300011157 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.9 -73.85 29721321 44020 22 0 28 0 SRX822482 0.0 Metagenome 3300050032 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 S3 30-34 DOE Joint Genome Institute (JGI) 3300050032 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3532 19.0475 631327670 869485 157 5 219 8 Restricted 26.59 Metagenome 3300026225 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Midwestern USA - DC3-124 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026225 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 16831608 55376 63 9 102 15 SRX2770434 Unrestricted 0.0 Metagenome 2032320004 *Microbiome Draft Soil microbial communities from FACE and OTC sites in USA Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- DOE Joint Genome Institute (JGI) 2032320004 Metagenome Analysis Newbler released based on JGI ITS No Yes kuske@lanl.gov Cheryl Kuske No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.85 -76.53333 189275844 481014 99 0 176 0 Unrestricted 0.0 Metagenome 3300003251 *Microbiome Permanent Draft Ircinia variabilis associated microbial communities from Achziv, Israel Ircinia variabilis associated microbial communities from Achziv, Israel - Sample 142 3300003251 Metagenome Analysis released by JGI data releasing policy No Yes burgsdorf84@gmail.com Ilia Burgsdorf No Host-associated Porifera Unclassified Unclassified Unclassified Ircinia variabilis associated 33.01 35.04 60643956 60154 15 1 17 1 0.0 Metagenome 3300006353 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 DOE Joint Genome Institute (JGI) 3300006353 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Host-associated Plants Endosphere Roots Unclassified Populus endosphere 35.8444 -83.9599 2953980025 9396334 2959 75 5297 155 SRX2840061 Unrestricted 0.0 Metagenome 3300009188 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 4m metaG DOE Joint Genome Institute (JGI) 3300009188 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jkjarett@lbl.gov, eaeloefadrosh@lbl.gov; rstepanauskas@bigelow.org; sari.peura@slu.se; jkjarett@lbl.gov Jessica Jarett, Emiley Eloe-Fadrosh; Ramunas Stepanauskas; Sari Peura; Jessica Jarett No Environmental Aquatic Lake Freshwater Unclassified freshwater lake hypolimnion 61.5637 22.044 4227361 14204 44 0 121 4 SRX2839451 Unrestricted 0.0 Metagenome 3300028978 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 275_B Beijing Genomics Institute (BGI) 3300028978 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 25626178 29373 23 0 26 0 ERX491061 0.0 Metagenome 3300033055 *Microbiome Permanent Draft Microbial communities from various environments in Magnetic Island Reef, Townsville, Australia Macroalgae surface microbial communities from Magnetic Island Reef, Townsville, Australia - 36440 AGRF 3300033055 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes b.glasl@aims.gov.au Bettina Glasl No Host-associated Algae Unclassified Brown Algae Unclassified Macroalgae surface -19.1531 146.8641 334312002 865237 206 24 347 75 0.0 Metagenome 3300013469 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00824 Weill Cornell Medical College 3300013469 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.99 11692499 16570 10 0 10 0 SRX822790 0.0 Metagenome 3300027523 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027523 Metagenome Analysis spades v. 3.11.1 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 227651488 658205 343 10 681 15 SRX2521133 Unrestricted 0.0 Metagenome 3300026905 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A4-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300026905 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 64680698 187172 115 3 218 5 SRX1990505 Unrestricted 0.0 Metagenome 3300045877 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from the Lower Geyser Basin, Yellowstone National Park, WY, United States - MSUNE_LGB_05 University of Wisconsin, Madison 3300045877 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.56097 -110.83286 181264349 277172 136 5 182 0 0.0 Metagenome 3300036994 *Microbiome Permanent Draft Soil microbial communities from a coastal freshwater wetland in North Carolina, United States Soil microbial communities from coastal freshwater wetland in North Carolina, United States - 9PFC DOE Joint Genome Institute (JGI) 3300036994 Metagenome Analysis metaspades v. 3.13.0 Yes Yes peraltaa@ecu.edu Ariane Peralta No Environmental Terrestrial Wetlands Soil Unclassified soil 35.8956 -76.1655 253714075 446691 186 12 320 26 SRX8387867 Unrestricted 19.81 Metagenome 3300011706 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00554 Weill Cornell Medical College 3300011706 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.67 -73.97 37635253 49648 22 0 41 0 SRX822521 0.0 Metagenome 3300025678 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC111_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025678 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 22.28 114.17 496905236 877831 472 8 638 13 SRX2339079 Unrestricted 0.0 Metagenome 3300004271 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG14_big_fil_post_rev_8/21/14_0.10 DOE Joint Genome Institute (JGI) 3300004271 Metagenome Analysis MEGAHIT v. 0.2.0 revert back to private per Christa Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 3252047 13065 15 0 29 1 SRX3348156 Unrestricted 0.0 Metagenome 3300025333 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 3 Metagenome VIRRA3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025333 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.8244 77.8344 5268032 8074 5 0 3 0 SRX2747261 Unrestricted 0.0 Metagenome 3300034075 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A4A4.2 DOE Joint Genome Institute (JGI) 3300034075 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 262773172 768372 469 6 824 7 SRX7658908 Unrestricted 6.68 Metagenome 3300003460 *Microbiome Permanent Draft Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S2-DC01B 3300003460 Metagenome Analysis released per JGI data releasing policy No Yes julie.champagne@cnrc-nrc.gc.ca Julie Champagne No Environmental Aquatic Neritic zone/Coastal water Marine Sediment Marine sediment 53.6667 -129.1333 64079668 243592 78 2 180 3 0.0 Metagenome 3300043637 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 144-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043637 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9877 -107.0024 468821270 1338126 567 45 1089 61 Unrestricted 7.07 Metagenome 3300060366 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210615_19_01 DOE Joint Genome Institute (JGI) 3300060366 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 425510217 614784 225 140 303 179 Unrestricted 33.75 Metagenome 3300042060 *Microbiome Permanent Draft Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - H_c8.2 Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042060 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1237 -89.1404 886711576 899839 2 8 4 15 SRX5234779 0.0 Metagenome 3300031278 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-170 DOE Joint Genome Institute (JGI) 3300031278 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.759 -70.891 355026247 663090 271 1 397 5 SRX5358430 Unrestricted 21.31 Metagenome 3300009704 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHG1_MetaG DOE Joint Genome Institute (JGI) 3300009704 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 34.72 135.27 727411643 1306784 698 0 1034 1 SRX2338788 Unrestricted 0.0 Metagenome 3300027367 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1370B-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027367 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.234 -123.9135 129884728 274153 163 22 298 36 SRX2753609 Unrestricted 26.25 Metagenome 3300031712 *Microbiome Permanent Draft Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG DOE Joint Genome Institute (JGI) 3300031712 Metagenome Analysis spades v. 3.12.0 Yes Yes rbneum@uw.edu Rebecca Neumann No Host-associated Plants Rhizosphere Roots Soil rhizosphere 47.6516 -122.3045 1389452884 2902794 905 4 1436 16 SRX5787927 Unrestricted 8.71 Metagenome 3300037727 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site1_salt_MII_2 DOE Joint Genome Institute (JGI) 3300037727 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Tidal flats microbial mat 20.7609 58.6478 277972751 529027 139 26 193 27 SRX9169795 Unrestricted 17.32 Metagenome 3300035419 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Seawater microbial communities from Algarve, Portugal - SW01 Euk Molecular Research LP (MR DNA) 3300035419 Metagenome Analysis Metawrap workflow v. 1.0.5 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Environmental Aquatic Oceanic Marine Unclassified seawater 36.979778 -7.989111 3709616 5124 2 0 2 0 0.0 Metagenome 3300069387 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Woodworth, Northern Plains, ND, USA - WOOD_003-M-20140507-COMP-DNA1 re-annotation Argonne National Laboratory 3300069387 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12823 -99.24136 3165707 9372 47 1 85 4 ERX2134033 0.0 Metagenome 3300012985 *Microbiome Permanent Draft Amended soil microbial communities from New York, USA to study carbon cycling Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG DOE Joint Genome Institute (JGI) 3300012985 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes twhitman@wisc.edu Thea Whitman No Environmental Terrestrial Unclassified Soil Agricultural land soil 42.4531 -76.3842 3167649892 7011664 2739 234 4605 406 SRX3568596 Unrestricted 5.76 Metagenome 3300042940 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR pl2 DOE Joint Genome Institute (JGI) 3300042940 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 955719071 1408780 321 89 413 102 Unrestricted 21.84 Metagenome 3300007603 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1568-02 DOE Joint Genome Institute (JGI) 3300007603 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2861 -123.7318 521516363 1025624 402 18 664 38 SRX2753759 Unrestricted 0.0 Metagenome 3300020494 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 25SEP2008 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020494 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.099444 -89.404444 44831632 104635 71 3 111 13 SRX3310965 Unrestricted 0.0 Metagenome 3300030405 *Microbiome Permanent Draft Nasopharyngeal microbial communities from infants in Muntinlupa City, Philippines and Johannesburg, South Africa Nasopharyngeal microbial communities from infants in Muntinlupa City, Philippines - RITM071I12 J. Craig Venter Institute 3300030405 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Respiratory system Nasopharynx Nasopharyngeal 14.4098512 121.034836 8506574 9782 9 0 2 0 SRX1670509 0.0 Metagenome 3300015058 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01164 Weill Cornell Medical College 3300015058 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.67 -73.9 15080245 24394 10 0 18 0 SRX823119 0.0 Metagenome 3300064810 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 678 in Boyle, Alberta, Canada - S00JY_0754 Microbiome Insights 3300064810 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 54.40412255 -112.5854583 80914568 113500 44 3 102 1 0.0 Metagenome 3300025880 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025880 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Pelagic marine 54.184167 7.9 1028770985 1881365 509 118 740 202 SRX802077 Unrestricted 0.0 Metagenome 3300045400 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-541 Genome Quebec 3300045400 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 55.120772 -125.196624 1187068033 2700628 588 159 944 312 0.0 Metagenome 3300020273 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000678 (ERX556047-ERR598999) CEA Genoscope 3300020273 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -8.978 -139.2432 259940234 659565 265 16 474 26 0.0 Metagenome 3300006174 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014 DOE Joint Genome Institute (JGI) 3300006174 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment watersheds 41.1752 -78.4168 3548399661 12205842 2669 170 5079 356 SRX2745510 Unrestricted 0.0 Metagenome 3300038739 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-10-3_at_4-5_cm Genome Quebec 3300038739 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.88147 -73.76618 782416739 2038172 806 18 1788 38 0.0 Metagenome 3300018017 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40 DOE Joint Genome Institute (JGI) 3300018017 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 890296376 1616996 385 6 666 8 SRX3960109 Unrestricted 16.2 Metagenome 3300008021 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1569A-3 DOE Joint Genome Institute (JGI) 3300008021 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2861 -123.7318 385103052 734366 325 75 495 152 SRX2753763 Unrestricted 6.17 Metagenome 3300025694 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025694 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 512445240 924861 322 68 450 110 SRX2999754 Unrestricted 0.0 Metagenome 3300059707 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059707 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 167897611 383674 192 40 297 77 SRX2753548 Unrestricted 0.0 Metagenome 2001200002 *Microbiome Finished Fossil microbial community from Whale Fall, Santa Cruz Basin of the Pacific Ocean and West Antarctic Peninsula Fossil microbial communities from Whale Fall, Santa Cruz Basin, Pacific Ocean - Rib Bone Sample DOE Joint Genome Institute (JGI) 2001200002 Metagenome Analysis No Yes emrubin@lbl.gov Eddy Rubin Yes 15845853 Environmental Aquatic Fossil Marine Whale fall Fossil 33.3 -119.22 31805936 41932 0 0 4 0 0.0 Metagenome 3300029832 *Microbiome Permanent Draft Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil - Buba_C4 Reanalysis Center for Advanced Technologies in Genomics, Sao Paulo University 3300029832 Metagenome Analysis metaSPAdes v. 3.12.0 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 10691278 21025 22 0 24 0 0.0 Metagenome 3300036978 *Microbiome Permanent Draft Sediment microbial communities from various lakes in Switzerland Sediment microbial communities from Lake Greifen, Zurich, Switzerland - LG_2.5 DOE Joint Genome Institute (JGI) 3300036978 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mark.lever@usys.ethz.ch Mark Alexander Lever No Environmental Aquatic Lake Freshwater Sediment sediment 47.3519 8.6747 797075767 1317066 420 10 634 44 SRX8398687 Unrestricted 15.15 Metagenome 3300022692 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen10, Rep 1, Penicillin and Streptomycin (Version 2) (version 2) DOE Joint Genome Institute (JGI) 3300022692 Metagenome Analysis spades v. 3.11.1-check No Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4149 -119.841 105813076 125327 27 4 24 15 SRX4038386 Unrestricted 0.0 Metagenome 3300041456 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG AgResearch, New Zealand, Mosgeil 3300041456 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Rhizoplane Roots Dairy farm pasture -43.648506 172.343549 971034231 2178278 277 26 1096 104 0.0 Metagenome 3300028372 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 3 #767 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028372 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 106360416 200254 86 3 129 7 SRX3241974 Unrestricted 0.0 Metagenome 3300028994 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 241_4M Beijing Genomics Institute (BGI) 3300028994 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 56899814 65624 36 0 36 0 ERX491020 0.0 Metagenome 3300050159 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D10_SEK1_5_to_RHK1 DOE Joint Genome Institute (JGI) 3300050159 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.154 -124.211 344846101 719025 270 61 397 87 Unrestricted 29.75 Metagenome 3300000532 *Microbiome Permanent Draft Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNA_Illumina_Assembled Beijing Genomics Institute (BGI), Lifesequencing S.L. 3300000532 Metagenome Analysis Flash v1.0.3; SOAPdenovo released per JGI data release policy No Yes manuel.fernandez@eez.csic.es Fernandez-Lopez, Manuel No Host-associated Plants Rhizosphere Roots Soil Quercus rhizosphere 36.96213 -3.41928 71970797 238586 476 25 863 34 0.0 Metagenome 3300069555 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Moab, Southern Rockies & Colorado Plateau, UT, USA - MOAB_003-M-20160727-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069555 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.24833 -109.38827 13196751 41617 86 10 173 18 0.0 Metagenome 3300027389 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus exumae BAHAMAS.2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027389 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 569641748 542775 4 4 6 8 SRX3340327 Unrestricted 0.0 Metagenome 7000000380 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 764487809 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000380 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 186529295 275619 0 0 0 0 0.0 Metagenome 3300012659 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100366 University of Pennsylvania 3300012659 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 53444775 86416 61 0 116 1 SRX756291 0.0 Metagenome 3300030619 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq) (version 2) DOE Joint Genome Institute (JGI) 3300030619 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9888 -108.3994 1884900371 3873256 868 17 1376 22 SRX5340872, SRX5340871 Unrestricted 0.0 Metagenome 3300069369 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Woodworth, Northern Plains, ND, USA - WOOD_001-M-20140507-COMP-DNA1 re-annotation Argonne National Laboratory 3300069369 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12823 -99.24136 2418418 8055 39 4 52 7 ERX2134062 0.0 Metagenome 3300025425 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK8 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025425 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 190824688 358533 61 1 103 2 SRX2746611 Unrestricted 0.0 Metagenome 3300025990 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_102 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025990 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 110020684 276820 173 3 307 4 SRX2564561, SRX2581032 Unrestricted 0.0 Metagenome 3300005952 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045 DOE Joint Genome Institute (JGI) 3300005952 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Permafrost soil 68.6139 -149.3145 801903892 2590712 480 38 901 77 SRX2739144 Unrestricted 0.0 Metagenome 3300050005 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought DOE Joint Genome Institute (JGI) 3300050005 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 29182043 59742 103 13 184 20 Unrestricted 11.26 Metagenome 3300038338 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Realigned salt marsh sediment microbial communities from Mersea Island, United Kingdom - W MIRM 2A University of York 3300038338 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Realigned salt marsh sediment 51.79675 0.921833 63988152 155074 100 0 160 0 0.0 Metagenome 3300038673 *Microbiome Permanent Draft Metagenomes from Anaerobic Digestors at Pulp and Paper Mills Anaerobic lagoon sludge microbial community from a pulp and paper mill in Alberta, Canada - WF171204 MSP Genome Quebec, University of Toronto 3300038673 Metagenome Analysis spades v. 3.12.0 Yes Yes elizabeth.edwards@utoronto.ca; camillaln@gmail.com Elizabeth A. Edwards; Camilla Nesb? No Engineered Bioreactor Unclassified Anaerobic Unclassified anaerobic sludge 55.2811 -114.7718 362915453 443557 105 2 165 1 0.0 Metagenome 3300031552 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-20 DOE Joint Genome Institute (JGI) 3300031552 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh sediment 42.722 -70.847 666620215 1349908 518 1 924 5 SRX6464022 Unrestricted 8.8 Metagenome 3300002954 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 DOE Joint Genome Institute (JGI) 3300002954 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 10931131 33274 68 7 128 17 SRX2013848 Unrestricted 0.0 Metagenome 7000000231 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 763840445 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000231 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 129061140 185023 0 0 0 0 0.0 Metagenome 3300026932 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 18 (SPAdes) DOE Joint Genome Institute (JGI) 3300026932 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 91590713 204569 113 6 173 19 SRX4339351 Unrestricted 0.0 Metagenome 3300001573 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP1483 DOE Joint Genome Institute (JGI) 3300001573 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -28.41 179.14 26213344 66348 71 0 118 0 SRX1982551 Unrestricted 0.0 Metagenome 3300040224 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_002-O-20160809-COMP-DNA1 Battelle Memorial Institute 3300040224 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 8587682 25648 39 8 68 11 0.0 Metagenome 3300012895 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2 DOE Joint Genome Institute (JGI) 3300012895 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Soil Agricultural land soil 43.3 -89.38 586642709 1450853 630 34 1234 80 SRX3298616 Unrestricted 4.04 Metagenome 3300055019 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_130410.NP1 DOE Joint Genome Institute (JGI) 3300055019 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 974634914 2115338 591 96 929 148 Restricted 0.0 Metagenome 7000000564 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764649650 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000564 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 87146945 164715 0 0 0 0 0.0 Metagenome 3300010165 *Microbiome Permanent Draft Processed tobacco microbial communities from Domestic Moist Snuff USA Processed tobacco microbial communities from USA domestic moist snuff from retail store in Atlanta, GA, USA - Moist Snuff M1 re-assembly Centers for Disease Control and Prevention (CDC), USA 3300010165 Metagenome Analysis SPADES 3_8 released per JGI data release policy Yes Yes wyu3@cdc.gov Robert E. Tyx No Engineered Food production Unclassified Unclassified Unclassified Processed Tobacco 33.881 -84.294 26928751 31126 32 4 17 4 0.0 Metagenome 3300028884 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195 DOE Joint Genome Institute (JGI) 3300028884 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040592 -106.9484972 1269631131 3066414 563 12 938 20 SRX5355399 Unrestricted 10.82 Metagenome 3300052665 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Photosynthetic mat viral communities from Octopus Spring, YNP, Wyoming, United States - OS20060913 OS-M2 DOE Joint Genome Institute (JGI) 3300052665 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.53408 -110.7979 24020609 39237 11 0 18 1 Unrestricted 0.0 Metagenome 3300003853 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius tantulus BELIZE.1 DOE Joint Genome Institute (JGI) 3300003853 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 514090443 1228713 7 6 22 5 SRX3299596, SRX3299597 Unrestricted 0.0 Metagenome 3300007975 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 246515023 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007975 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 57574264 72791 35 0 64 0 0.0 Metagenome 3300027788 *Microbiome Permanent Draft Marine microbial communities from western Arctic Ocean Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027788 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh Yes 30271971 Environmental Aquatic Oceanic Marine Unclassified Marine 79.2466 -150.0613 926068557 1787575 265 119 421 198 SRX2997526 Unrestricted 0.0 Metagenome 3300070971 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_045-M-20190717-COMP-DNA1 3300070971 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 7263337 23347 38 3 70 3 0.0 Metagenome 3300070736 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_006-M-20170731-COMP-DNA1 3300070736 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 14734136 45679 61 6 120 15 0.0 Metagenome 3300042644 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A30 University of California, Davis 3300042644 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 239187497 664663 336 6 572 11 0.0 Metagenome 3300055386 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.19C.7 SIP fraction DOE Joint Genome Institute (JGI) 3300055386 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 276194303 529832 144 25 230 35 Unrestricted 22.1 Metagenome 3300033560 *Microbiome Permanent Draft Picher, OK, Soil Microbes Composed assembly of Cupriavidus sp. strains from Northwest Missouri State University, MO, USA - EM2223 The Sequencing Center (Fort Collins) 3300033560 Metagenome Analysis SPAdes v. 3.10.1 released by JGI data releasing policy No Yes agcamp@nwmissouri.edu Alisha Campbell No Engineered Modeled Unclassified Simulated communities (sequence read mixture) Unclassified defined medium 40.3519854 -94.8825243 6444604 6040 2 0 1 0 0.0 Metagenome 3300048062 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_121003.NP1 DOE Joint Genome Institute (JGI) 3300048062 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 769462726 1714604 534 89 844 167 Unrestricted 13.82 Metagenome 3300029940 *Microbiome Permanent Draft Sewage treatment plant microbial communities from Vermont, USA Sewage treatment plant microbial communities from Vermont, USA - CLO_B Norwich University 3300029940 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes Yes 27610223 Engineered Wastewater Unclassified Industrial wastewater Unclassified Sewage treatment plant 43.727094 -72.425964 70334643 108098 57 3 78 5 SRX1058038 0.0 Metagenome 3300021058 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_32mM DOE Joint Genome Institute (JGI) 3300021058 Metagenome Analysis spades v. 3.10.1 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 113401672 128578 27 1 34 3 SRX4010645 Unrestricted 46.76 Metagenome 3300000072 *Microbiome Permanent Draft Freshwater microbial plankton communities from Lake Konstanz, Germany Freshwater microbial plankton communities from Lake Konstanz, Germany, sample GS698_0.1 um size class J. Craig Venter Institute (JCVI) 3300000072 Metagenome Analysis released per JGI data release policy No Yes david.schleheck@uni-konstanz.de David Schleheck No Environmental Aquatic Lentic Freshwater Epilimnion Freshwater 47.451381 9.073833 0 0 0 0 0 0 0.0 Metagenome 3300011880 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00599 Weill Cornell Medical College 3300011880 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.96 44867858 75850 30 0 39 0 SRX822566 0.0 Metagenome 3300056658 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.20C.7 SIP fraction DOE Joint Genome Institute (JGI) 3300056658 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 190339478 354151 105 4 183 4 Unrestricted 12.46 Metagenome 3300013247 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100481 University of Pennsylvania 3300013247 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 22052014 50499 22 0 36 1 SRX756517 0.0 Metagenome 3300003124 *Microbiome Permanent Draft Continuous culture Bioreactor microbial community inoculated with sediment from German Wadden Sea Bioreactor microbial community inoculated from Wadden Sea, Germany - 48 days of incubation Bielefeld University, Max Planck Institute for Marine Microbiology 3300003124 Metagenome Analysis MetaVelvet v. v0.3 Made public because these are downloaded from Genbank No Yes mstrous@mpi-bremen.de Marc Strous Yes 23227024 Engineered Bioreactor Marine sediment inoculum Continuous culture Unclassified Continuous culture Bioreactor 54.537548 8.400555 15268951 22757 15 0 25 0 0.0 Metagenome 3300029060 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 263_M Beijing Genomics Institute (BGI) 3300029060 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 196539917 283384 165 0 237 0 ERX491039 0.0 Metagenome 3300039202 *Microbiome Permanent Draft Freshwater sediment microbial communities from Chandeleur Islands, USA Subtidal sediment core microbial communities from Chandeleur Islands, USA - SSubC1 University of Alabama 3300039202 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Wetlands Freshwater Sediment Subtidal sediment core 29.862806 -88.841194 7731755 22552 28 0 41 0 0.0 Metagenome 3300056917 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E2P_9_10 DOE Joint Genome Institute (JGI) 3300056917 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9927826 -81.4891309 1549165638 2356925 554 6 952 4 Unrestricted 13.7 Metagenome 3300001889 *Microbiome Permanent Draft Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils (2) Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils - Sample18 3300001889 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Terrestrial Unclassified Soil Grasslands Grassland soil 23.850674 69.734802 0 0 0 0 0 0 0.0 Metagenome 3300020321 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100002003 (ERX556042-ERR599060) CEA Genoscope 3300020321 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 6.3929 -103.0691 284570288 641918 232 19 400 44 0.0 Metagenome 3300030053 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2 DOE Joint Genome Institute (JGI) 3300030053 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 1433387964 3065772 586 85 927 108 SRX5799062 Unrestricted 9.89 Metagenome 3300043698 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - Rondonia_Pasture_3_A10cm DOE Joint Genome Institute (JGI) 3300043698 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.204 -62.774 647542102 1725264 409 3 800 4 Unrestricted 7.87 Metagenome 3300012013 *Microbiome Permanent Draft Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 67 - Surface Ice Molecular Research LP (MR DNA) 3300012013 Metagenome Analysis metaSPAdes released by JGI data releasing policy No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Ice Freshwater Unclassified Surface Ice 42.844722 -79.573889 290714885 950153 25 5 71 6 0.0 Metagenome 3300001141 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 DOE Joint Genome Institute (JGI) 3300001141 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 14173219 43232 111 19 193 23 SRX3311921 Unrestricted 0.0 Metagenome 2124908044 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5 v2 (version 2) DOE Joint Genome Institute (JGI) 2124908044 Metagenome Analysis Velvet released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 101334378 188565 30 1 49 0 Unrestricted 0.0 Metagenome 3300014580 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 171_L2_2014-4-20 San Diego State University 3300014580 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 2948109 11176 18 13 56 35 0.0 Metagenome 3300054564 *Microbiome Permanent Draft Soil microbial communities from pasture in Hopland Research and Extension Center, CA, USA Soil viral communities from pasture in Hopland Research and Extension Center, CA, USA - T2-H2O+P-C library kit 1SPlus DOE Joint Genome Institute (JGI) 3300054564 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes trubl1@llnl.gov Gareth Trubl No Environmental Terrestrial Pasture Soil Unclassified Soil 39.00177 -123.06967 57713221 154479 34 0 110 1 Unrestricted 268.41 Metagenome 3300021586 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - E2014-0086-100LTR University of Michigan 3300021586 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified freshwater lake 41.826417 -83.193817 194554572 337709 40 74 65 138 0.0 Metagenome 3300041796 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - C_31_wk_3 DOE Joint Genome Institute (JGI) 3300041796 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9617 -107.031 225333341 677973 364 24 695 38 SRX14808377 Unrestricted 7.27 Metagenome 3300045834 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_3_A DOE Joint Genome Institute (JGI) 3300045834 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 156697517 192668 101 1 116 1 Unrestricted 113.65 Metagenome 3300044545 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_CSTR_097 DOE Joint Genome Institute (JGI) 3300044545 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 139976569 215614 159 0 221 0 SRX12655187 Unrestricted 95.16 Metagenome 3300053127 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 endosphere DOE Joint Genome Institute (JGI) 3300053127 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.588254 -123.193143 555884964 700850 116 127 178 147 Unrestricted 20.92 Metagenome 3300011694 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00925 Weill Cornell Medical College 3300011694 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.95 24289633 34207 16 0 18 0 SRX822888 0.0 Metagenome 3300006914 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 DOE Joint Genome Institute (JGI) 3300006914 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Host-associated Plants Rhizosphere Roots Soil Populus rhizosphere 35.8444 -83.9599 4084442438 12402722 2425 92 4257 167 SRX2923914 Unrestricted 0.0 Metagenome 3300051217 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T50 (v3) (version 3) DOE Joint Genome Institute (JGI) 3300051217 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 59106730 124860 89 4 149 13 SRX4550062 Unrestricted 0.0 Metagenome 3300042832 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151 NMDC pilot DOE Joint Genome Institute (JGI) 3300042832 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92057636 -106.94874802 1103044727 2862716 830 54 1461 88 SRX5354689 0.0 Metagenome 3300001999 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot11-1 3300001999 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 1715990 10081 54 4 101 7 0.0 Metagenome 3300031802 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057 DOE Joint Genome Institute (JGI) 3300031802 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 74.6947 -146.6612 1718898526 3513781 1202 71 1991 140 SRX5817109 Unrestricted 13.52 Metagenome 3300007115 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Stylissa sp. microbiome, Papua New Guinea CO2 seep, Upa-Upasina ""bubble"", st44is" University of New South Wales 3300007115 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Marine sponge (Stylissa sp.) -9.8241 150.825833 182683688 425539 74 8 112 15 0.0 Metagenome 3300032677 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18019 DOE Joint Genome Institute (JGI) 3300032677 Metagenome Analysis spades v. 3.13.0 Yes Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.0411 -89.6861 675203929 1233573 369 41 522 68 SRX7891549 Unrestricted 19.77 Metagenome 3300009814 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S2_50_60 DOE Joint Genome Institute (JGI) 3300009814 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228379 -119.2717467 163165539 371036 188 5 354 5 SRX2523281 Unrestricted 0.0 Metagenome 3300049245 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB29 DOE Joint Genome Institute (JGI) 3300049245 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 40008261 107110 144 3 291 9 Unrestricted 22.46 Metagenome 3300024996 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_solids_2 (SPAdes) DOE Joint Genome Institute (JGI) 3300024996 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 228434943 306391 104 23 126 25 SRX2770515 Unrestricted 0.0 Metagenome 3300020514 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 27AUG2008 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020514 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 90079343 202438 111 14 162 28 SRX3310950 Unrestricted 0.0 Metagenome 3300038397 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR08_23 DOE Joint Genome Institute (JGI) 3300038397 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Crustal Fluids crustal fluids 47.7534 -127.7638 905937285 2281370 736 159 1183 264 SRX9096348 Unrestricted 24.11 Metagenome 3300011990 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S31-01-D University of California, Los Angeles 3300011990 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 230871347 392314 223 4 341 2 SRX870389 0.0 Metagenome 2043231000 *Microbiome Permanent Draft Xyleborus affinis microbial communities from Bern, Switzerland Xyleborus affinis microbial communities from Bern, Switzerland, sample of adult community DOE Joint Genome Institute (JGI) 2043231000 Metagenome Analysis Newbler No Yes gsuen@wisc.edu Garret Suen Yes 25406380 Environmental Terrestrial Insects nest Nest Nest dump Xyleborus affinis 46.903604 7.5 88061459 120235 14 0 20 0 0.0 Metagenome 3300011425 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT244_2 DOE Joint Genome Institute (JGI) 3300011425 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9778 -107.0027 324502633 780983 502 30 963 57 SRX3539339 Unrestricted 0.0 Metagenome 3300012561 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100650 University of Pennsylvania 3300012561 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9354032 25739 14 0 25 1 SRX756444 0.0 Metagenome 7000000628 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 764224817 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000628 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 191702969 306978 0 0 0 0 0.0 Metagenome 3300049370 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC39 DOE Joint Genome Institute (JGI) 3300049370 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 124067301 303466 249 7 546 9 Unrestricted 30.6 Metagenome 3300001033 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN393 DOE Joint Genome Institute (JGI) 3300001033 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Soil 44.20517707 -122.1284473 630415 1956 32 0 41 2 SRX1986735 Unrestricted 0.0 Metagenome 3300012234 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00868 Weill Cornell Medical College 3300012234 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.69 -73.84 20707348 28739 22 0 25 0 SRX822834 0.0 Metagenome 3300003503 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM DOE Joint Genome Institute (JGI) 3300003503 Metagenome Analysis revert back to private per Christa Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 46414042 130600 182 10 371 17 SRX2574889 Unrestricted 0.0 Metagenome 3300023049 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 2 #699 DOE Joint Genome Institute (JGI) 3300023049 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 119359537 232960 141 8 219 13 SRX4062625 Unrestricted 17.59 Metagenome 3300027951 *Microbiome Permanent Draft Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran, Adriatic Sea Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge mesohyl, lysed by bead beating (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027951 Metagenome Analysis spades v. 3.11.1 Yes Yes ute.hentschel@uni-wuerzburg.de Ute Hentschel No Host-associated Porifera Unclassified Sponge Unclassified Host-associated 45.5099 13.56 326735328 481804 120 6 168 17 SRX4919420 Unrestricted 0.0 Metagenome 3300070422 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Alabama, USA - LENO_063-M-20180709-COMP-DNA1 3300070422 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 12170417 40207 66 2 120 4 0.0 Metagenome 3300006299 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 550534656 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006299 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 74280129 93102 61 0 82 0 0.0 Metagenome 3300061205 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from National Grasslands LBJ, Texas, USA - CLBJ_040-M-20210503-comp-1 DOE Joint Genome Institute (JGI) 3300061205 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Grasslands Soil Unclassified Terrestrial soil 33.37882 -97.64669 1372843960 2336682 401 17 749 22 Unrestricted 14.65 Metagenome 3300018478 *Microbiome Permanent Draft Bovine feces microbial communities from beef and dairy calves in Davis, CA, USA Bovine feces microbial communities from dairy calf in Davis, CA, USA - DMJL001D re-assembly QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018478 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes jxnliu@ucdavis.edu Jinxin Liu No Host-associated Mammals Large intestine Digestive system Fecal feces 38.5449 -121.7405 124827796 208471 96 0 207 0 0.0 Metagenome 3300027743 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027743 Metagenome Analysis spades v. 3.11.1 Yes Yes mike.wilkins@colostate.edu Michael Wilkins Yes 30086797 Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0956 -99.1001 650679316 1404589 596 8 1133 10 SRX2753786 Unrestricted 0.0 Metagenome 3300035113 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 DOE Joint Genome Institute (JGI) 3300035113 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1125 -122.987 1178153210 2822416 781 82 1377 135 SRX8289135 Unrestricted 7.74 Metagenome 3300070303 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_006-M-20171109-COMP-DNA1 3300070303 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 92867610 243969 113 11 245 14 0.0 Metagenome 3300047537 *Microbiome Permanent Draft Floating fern leaf microbial communities from various locations Floating fern leaf microbial communities from Griffith, New South Wales, Australia - 7523_IRRI DOE Joint Genome Institute (JGI) 3300047537 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dave.armitage@gmail.com David Armitage No Host-associated Plants Phylloplane/Leaf Phyllosphere Endophytes Leaf -34.286 146.0313 154575645 240646 15 18 32 31 Unrestricted 112.99 Metagenome 3300070244 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Bartlett Experimental Forest, New Hampshire, USA - BART_023-O-20170614-COMP-DNA1 3300070244 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 23121701 68799 63 10 132 15 0.0 Metagenome 3300036822 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in New South Wales, Australia - Pi_8 DOE Joint Genome Institute (JGI) 3300036822 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil -34.5 150.0 1208658841 2028574 319 51 561 69 SRX8386853 Unrestricted 21.74 Metagenome 3300026840 *Microbiome Permanent Draft Genome and metagenome analysis of marine red algae Porphyra Marine algal microbial communities from Porto, Portugal - Porto_4 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026840 Metagenome Analysis spades v. 3.11.1 Yes Yes Brawley@maine.edu Susan Brawley No Host-associated Algae Unclassified Red algae Unclassified Marine 41.162 -8.622 80657732 119990 50 3 54 1 SRX2954902 Unrestricted 0.0 Metagenome 3300000286 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM268 Beijing Genomics Institute (BGI), Macrogen 3300000286 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 106092834 208368 409 2 643 5 0.0 Metagenome 3300014023 *Microbiome Permanent Draft Wastewater microbial communities from municipal sewage treatment plants in Nanjing, China Wastewater microbial communities from municipal sewage treatment plant in Nanjing, China - JXZ_AS_meta Nanjing University 3300014023 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 31017763 84300 36 4 78 8 SRX425446 0.0 Metagenome 3300037044 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Coal bed water microbial communities from the Powder River Basin, Montana, United States - T6FGM DOE Joint Genome Institute (JGI) 3300037044 Metagenome Analysis metaspades v. 3.13.0 Yes Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Aquatic Groundwater Deep subsurface Coalbed methane well water coal bed water 45.4351 -106.3922 959958193 1170777 345 5 436 18 SRX8395084 Unrestricted 21.48 Metagenome 3300040282 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 021B_R1 University of Maryland 3300040282 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.30770278 24.53240278 6658473 16812 32 6 50 5 0.0 Metagenome 3300045563 *Microbiome Draft Lake microbial communities from Canada Lake sediment microbial communities from the Prairies ecozone, Canada - Lake 10-402 Genome Quebec 3300045563 Metagenome Analysis MEGAHIT v1.0.6 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Lake Sediment 53.256011 -112.912167 455249432 597067 184 16 240 18 0.0 Metagenome 3300029555 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P118V1 Beijing Genomics Institute (BGI) 3300029555 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 151661421 200215 124 1 208 0 0.0 Metagenome 3300021510 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex DOE Joint Genome Institute (JGI) 3300021510 Metagenome Analysis spades v. 3.11.1-check Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified groundwater sediment 38.9201 -106.9487 .05 271675662 670796 297 2 622 6 SRX4038478 Unrestricted 10.8 Metagenome 3300010994 *Microbiome Permanent Draft CWC Coastal Marshes ECM14MPS05_Bassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method B (2X150bp) Molecular Research LP (MR DNA) 3300010994 Metagenome Analysis SPAdes 3.9.0 released by JGI data releasing policy No Yes aengel1@utk.edu Annette Engel No Environmental Aquatic Wetlands Freshwater Sediment sediment 29.45083 -89.75005 51010612 106938 47 2 81 5 0.0 Metagenome 3300010372 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day1 DOE Joint Genome Institute (JGI) 3300010372 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 39.849 -81.036 243861443 455545 332 1 554 1 SRX2996503, SRX2996504 Unrestricted 0.0 Metagenome 3300029369 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 081_4_30_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029369 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 160246280 206649 212 0 247 0 0.0 Metagenome 3300002313 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP07-I4 3300002313 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300013163 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100272 University of Pennsylvania 3300013163 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 27257527 58525 16 0 21 0 SRX756629 0.0 Metagenome 3300022485 *Microbiome Permanent Draft Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain - individual 4 Autonomous University of Barcelona 3300022485 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.38 -0.51 17441767 22924 16 0 26 0 0.0 Metagenome 3300014516 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 82_B Beijing Genomics Institute (BGI) 3300014516 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 36513394 41341 14 0 20 0 ERX491313 0.0 Metagenome 3300050258 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_9 DOE Joint Genome Institute (JGI) 3300050258 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.6 161.083 385632275 562744 80 13 114 19 SRX18235897 Restricted 40.3 Metagenome 3300014649 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01364 Weill Cornell Medical College 3300014649 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.67 -73.98 23497455 39133 19 0 29 0 SRX823304 0.0 Metagenome 3300042805 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Lake water microbial communities from Ohio, USA - Utica-2 Time Series LW 2014_7_11 NMDC pilot DOE Joint Genome Institute (JGI) 3300042805 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Lake Freshwater Unclassified Lake water 40.178 -81.073 0 183816980 423615 161 34 276 55 SRX2925262 0.0 Metagenome 3300000855 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A35-5cm-18A)- 1 week illumina University of Tennessee 3300000855 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 963491 5492 26 8 39 7 0.0 Metagenome 3300002101 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Incubations 11-31A DOE Joint Genome Institute (JGI) 3300002101 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.290884 -156.788063 255476612 486805 266 0 507 2 SRX1990926 Unrestricted 0.0 Metagenome 3300020017 *Microbiome Permanent Draft Freshwater viral communities from Chicago Sanitary Ship Canal, USA Freshwater viral communities from Illinois river at Ottawa, Illinois, USA - 2 University of Illinois-Urbana Champaign 3300020017 Metagenome Analysis SPADES v3.10.1 released by JGI data releasing policy No Yes wtliu@illinois.edu Wen-Tso Liu No Environmental Aquatic River Freshwater Unclassified Freshwater 41.34111 -88.845 24541885 39475 9 0 10 0 0.0 Metagenome 3300031179 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Sorghum-adapted microbial communities enriched on wild type (WT) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - WT_Day14_3 DOE Joint Genome Institute (JGI) 3300031179 Metagenome Analysis spades v. 3.12.0 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 141772033 188289 152 0 157 0 SRX5661261 Unrestricted 229.08 Metagenome 3300060273 *Microbiome Permanent Draft Sediment microbial communities from the PNNL SFA Hanford 300 Area, Columbia River, WA, USA Sediment microbial communities from the PNNL SFA Hanford 300 Area, Columbia River, WA, USA - Surf Sed DOE Joint Genome Institute (JGI) 3300060273 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes eroden@geology.wisc.edu Eric Roden No Environmental Aquatic River Freshwater Sediment Sediment 46.467778 -119.464444 860849122 1523494 612 68 1138 103 Unrestricted 16.42 Metagenome 3300046755 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_150819.NP1 DOE Joint Genome Institute (JGI) 3300046755 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 785952605 1635292 542 89 811 144 Unrestricted 12.09 Metagenome 3300018494 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet fungal communities from Santa Barbara, California, USA - diluted pellet 2 DOE Joint Genome Institute (JGI) 3300018494 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4204 -119.6671 4302205243 7691554 8780 48 13539 69 SRX3964289 Unrestricted 11.23 Metagenome 3300044950 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater bacterial communities from Lake Mendota, Wisconsin, United States - ME_2020-08-05_15m_Bacteria_A DOE Joint Genome Institute (JGI) 3300044950 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 882315141 1298340 270 6 393 11 Unrestricted 19.85 Metagenome 3300020366 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B000000437 (ERX556091-ERR599146) CEA Genoscope 3300020366 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -35.2087 26.2932 551028789 1510083 274 32 635 67 ERX555970, ERX556091 0.0 Metagenome 3300039235 *Microbiome Permanent Draft Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada - low-flow bush EMw5 Dalhousie University 3300039235 Metagenome Analysis Megahit v. 1.2.8 released by JGI data releasing policy No Yes smurdock@uvic.ca Sheryl Murdock No Environmental Aquatic Hydrothermal vents Marine Tubeworm bush tubeworm bush 47.95 -129.0969 495449637 973050 382 78 636 154 0.0 Metagenome 3300029387 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 094_5_2_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029387 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 198133928 256412 195 0 257 0 0.0 Metagenome 3300028822 *Microbiome Permanent Draft Seawater microbial communities from Yap Trench, western Pacific Ocean Seawater microbial communities from Yap Trench, western Pacific Ocean - 37I-Yap-CTD02-75m 2000bp_Newsun Novogene 3300028822 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes newsun1987@126.com Xinxu Zhang No Environmental Aquatic Ocean trench Marine Unclassified seawater 9.87 138.5 638920039 732776 306 1 338 1 0.0 Metagenome 3300011816 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00860 Weill Cornell Medical College 3300011816 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -73.81 39779822 53126 13 0 14 0 SRX822826 0.0 Metagenome 3300038840 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample11 King Abdulaziz City for Science and Technology (KACST) 3300038840 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 18.34 40.44 21901970 56692 46 0 67 0 SRX1097577 0.0 Metagenome 3300013931 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway n/a -P00656 Weill Cornell Medical College 3300013931 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Unclassified city subway 40.86 -73.92 19926548 40712 17 0 24 0 SRX822623 0.0 Metagenome 3300002836 *Microbiome Permanent Draft Biogas reactor microbial communities from Swedish University of Agricultural Sciences, Alnarp, Sweden, and As, Norway that are enriched on cellulose Biogas reactor microbial communities from SLU, Sweden, that are enriched on cellulose - Sample No4 100kmer 3300002836 Metagenome Analysis released by JGI data releasing policy No Yes phil.pope@nmbu.no Phil Pope No Engineered Bioreactor Biogas Anaerobic Unclassified Biogas reactor 55.656904 13.082968 20557040 21461 11 0 16 0 0.0 Metagenome 3300009696 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_STIC10_MetaG DOE Joint Genome Institute (JGI) 3300009696 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 41.84 -87.68 1142716097 2119444 722 4 1187 7 SRX2157901 Unrestricted 0.0 Metagenome 3300043674 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 396-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043674 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9893 -107.0638 788685087 2048074 542 42 1043 86 Unrestricted 7.14 Metagenome 3300029715 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37830 Beijing Genomics Institute (BGI) 3300029715 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 264927764 338566 220 1 285 2 0.0 Metagenome 3300001792 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR11Jul_8B1 DOE Joint Genome Institute (JGI) 3300001792 Metagenome Analysis Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 46280736 83180 42 0 72 0 SRX3320906 Unrestricted 0.0 Metagenome 3300045011 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - DOSP7-9-6-19 DOE Joint Genome Institute (JGI) 3300045011 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.098 -120.7169 891531431 2300367 1148 30 1854 61 Restricted 7.85 Metagenome 3300025157 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3 (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025157 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; duane.moser@dri.edu Ramunas Stepanauskas; Duane Moser No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Thermal springs 36.96 -116.72 913912776 2199636 891 15 1512 37 SRX2948734 Unrestricted 0.0 Metagenome 3300050572 *Microbiome Permanent Draft Interactions between chemoautotrophic and heterotrophic bacteria Seawater microbial communities from North Pacific Ocean, California, USA - SR7_200 DOE Joint Genome Institute (JGI) 3300050572 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes asantoro@ucsb.edu Alyson Santoro No Environmental Aquatic Oceanic Marine Unclassified Seawater 34.25 -119.91 140428211 160474 54 0 66 0 Unrestricted 387.05 Metagenome 3300010219 *Microbiome Permanent Draft Soil microbial communities from Bangor area, North Wales, UK enriched with cashew seed oil Soil microbial communities from Bangor area, North Wales, UK, before enrichment, after WGA Fidelity Systems Inc 3300010219 Metagenome Analysis Phred/Phrap/Consed v. 23.0 released per JGI data release policy Yes Yes stepan.toshchakov@gmail.com Stepan Toshchakov No Engineered Lab enrichment Unclassified Unclassified Unclassified soil 53.24 -4.01 74944429 178957 28 0 59 0 0.0 Metagenome 3300032259 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Coastal sediment microbial communities from Maine, United States - Eddy worm burrow 2 DOE Joint Genome Institute (JGI) 3300032259 Metagenome Analysis spades v. 3.13.0 Yes Yes jbeam@bigelow.org; demerson@bigelow.org Jake Beam; David Emerson No Environmental Aquatic Coastal Marine Sediment worm burrow 43.9948 -69.6486 2319002083 5240161 1576 33 2681 60 SRX5822352 Unrestricted 8.89 Metagenome 3300044654 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - COA3S DOE Joint Genome Institute (JGI) 3300044654 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 1806289301 3204637 520 14 1056 28 Unrestricted 13.08 Metagenome 3300006137 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t1_698M_inflammed - microbial_metagenome University of Texas Southwestern Medical Center 3300006137 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 220775196 460621 152 0 216 0 0.0 Metagenome 3300034148 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Sediment microbial communities from East River floodplain, Colorado, United States - 18_j17 DOE Joint Genome Institute (JGI) 3300034148 Metagenome Analysis metaspades v. 3.13.0 Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Aquatic Sediment Floodplain Unclassified sediment 38.9229 -106.9499 559417034 1448528 447 9 846 19 SRX7630713 Unrestricted 6.17 Metagenome 3300054067 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin11_30_metaG re-annotation DOE Joint Genome Institute (JGI) 3300054067 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1086204021 2064905 373 1 647 1 SRX3293580 0.0 Metagenome 3300029768 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37277 Beijing Genomics Institute (BGI) 3300029768 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 211086502 271193 153 0 264 0 0.0 Metagenome 3300039328 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 635_M Beijing Genomics Institute (BGI) 3300039328 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 127344476 167995 91 0 173 0 ERX491290 0.0 Metagenome 3300033403 *Microbiome Permanent Draft Metagenomic SGS 2x251 Riparian soil bacterial communities from Cottonwood Creek Park, Encinitas, CA, USA - R5 Illumina 3300033403 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Riparian soil Soil 33.051604 -117.289363 1444987186 3939755 825 39 1297 79 0.0 Metagenome 7000000475 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 160704339 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000475 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 181780184 277573 0 0 0 0 0.0 Metagenome 3300022539 *Microbiome Permanent Draft Abyssal plain sediment microbial communities from Eastern Gulf of Mexico, Atlantic Ocean Abyssal plain sediment microbial communities from Eastern Gulf of Mexico, Atlantic Ocean - EGM044 re-assembly University of Calgary 3300022539 Metagenome Analysis SPAdes v. 3.11.0 released by JGI data releasing policy Yes Yes dongxiyang@tio.org.cn Xiyang DONG No Environmental Aquatic Sediment Marine Unclassified Abyssal plain sediment 25.3043 -90.0659 755447994 1285326 311 6 499 14 0.0 Metagenome 3300031835 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21 DOE Joint Genome Institute (JGI) 3300031835 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1088414396 2616175 344 3 550 5 SRX5817917 Unrestricted 11.26 Metagenome 3300025706 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC028_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025706 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.3 -88.15 499638033 950803 369 1 623 5 SRX2165244 Unrestricted 0.0 Metagenome 3300046515 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere DOE Joint Genome Institute (JGI) 3300046515 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5875 -123.1933 522468473 826173 244 49 414 70 Unrestricted 22.59 Metagenome 3300054089 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin10_60_metaG re-annotation DOE Joint Genome Institute (JGI) 3300054089 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1015218785 1819805 364 4 575 4 SRX3293369 0.0 Metagenome 3300011678 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00231 Weill Cornell Medical College 3300011678 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.86 -73.92 25225652 35004 10 0 21 0 SRX822210 0.0 Metagenome 3300023275 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L199-509C-5 DOE Joint Genome Institute (JGI) 3300023275 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 738672082 1638245 621 121 1166 179 SRX4801093 Unrestricted 8.18 Metagenome 3300012526 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ857 (21.06) DOE Joint Genome Institute (JGI) 3300012526 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.0742 163.7853 568254376 1279577 328 3 562 6 SRX3372539 Unrestricted 0.0 Metagenome 3300057308 *Microbiome Permanent Draft Lake microbial communities from Canada Sediment microbial communities from the Atlantic Maritime Ecozone, Canada - bottom sediment 07-025 metaSPAdes Genome Quebec 3300057308 Metagenome Analysis SPAdes v. 3.11.1 metaSPAdes mode Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Sediment 43.6497 -65.7118 1276991467 3321443 667 1 1362 5 0.0 Metagenome 3300009143 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 DOE Joint Genome Institute (JGI) 3300009143 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Saprolite Vadose zone soil 39.7291 -123.6419 1537151202 3162441 637 37 1217 98 SRX2933105 Unrestricted 0.0 Metagenome 3300004064 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWC_D1 DOE Joint Genome Institute (JGI) 3300004064 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 37.926434 -122.509186 938308745 2586085 836 13 1821 26 SRX7142939 Unrestricted 0.0 Metagenome 3300014107 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_014 The George Washington University (GWU) 3300014107 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 29801548 62698 24 10 54 13 SRX656262 0.0 Metagenome 3300024255 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MG DOE Joint Genome Institute (JGI) 3300024255 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca; shallam@interchange.ubc.ca Sean Crowe; Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5847 -123.5008 861540479 1635394 450 59 665 116 SRX4484597 Unrestricted 34.01 Metagenome 3300040076 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_003-O-20170711-COMP-DNA1 Battelle Memorial Institute 3300040076 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 13979570 40538 29 4 49 3 0.0 Metagenome 3300000699 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 79 DOE Joint Genome Institute (JGI) 3300000699 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 9424338 27148 40 0 59 0 SRX4341379 Unrestricted 0.0 Metagenome 3300011704 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00596 Weill Cornell Medical College 3300011704 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.97 35410747 49145 25 0 28 0 SRX822563 0.0 Metagenome 3300008640 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 763901136 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008640 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 141074577 186849 115 0 181 0 0.0 Metagenome 3300036996 *Microbiome Permanent Draft Soil microbial communities from a coastal freshwater wetland in North Carolina, United States Soil microbial communities from coastal freshwater wetland in North Carolina, United States - 16PFC DOE Joint Genome Institute (JGI) 3300036996 Metagenome Analysis metaspades v. 3.13.0 Yes Yes peraltaa@ecu.edu Ariane Peralta No Environmental Terrestrial Wetlands Soil Unclassified soil 35.8959 -76.1658 594527065 997751 189 12 333 17 SRX8388126 Unrestricted 13.01 Metagenome 3300005060 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 15 soap2 Center for Advanced Technologies in Genomics, Sao Paulo University 3300005060 Metagenome Analysis SOAPdenovo2 released per PI's request No Yes joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 177772752 455039 9 5 35 13 0.0 Metagenome 3300052898 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Colorado, USA - CP_C1_S1 DOE Joint Genome Institute (JGI) 3300052898 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 39.9381 -105.9713 193805996 367276 219 61 422 106 Unrestricted 22.85 Metagenome 3300032091 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25 DOE Joint Genome Institute (JGI) 3300032091 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1221857788 2912534 494 4 804 4 SRX5820399 Unrestricted 12.69 Metagenome 3300049702 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Mesophilic digester sludge microbial communities from biogas plant in Weichs, Bavaria, Germany - PB8_MG_220518 DOE Joint Genome Institute (JGI) 3300049702 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 48.39537892 11.44760761 482229717 856938 708 8 1029 10 Unrestricted 20.48 Metagenome 3300002295 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 28JUN2011 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002295 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 37449116 89582 62 34 143 42 SRX1989646 Unrestricted 0.0 Metagenome 3300059638 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Michigan, United States - E2019-0012 DOE Joint Genome Institute (JGI) 3300059638 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.97277778 -83.3325 942414229 1715377 270 212 427 399 Unrestricted 0.0 Metagenome 3300040261 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA Corn field soil microbial communities from Boone County, Iowa, USA - P13-LM-July2012 Iowa State University 3300040261 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land Corn field soil 42.01375 -93.783837 7831519 25044 61 5 136 11 0.0 Metagenome 2032320006 *Microbiome Draft Soil microbial communities from FACE and OTC sites in USA Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ DOE Joint Genome Institute (JGI) 2032320006 Metagenome Analysis Newbler released based on JGI ITS No Yes kuske@lanl.gov Cheryl Kuske No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.94106884 -84.4 130858946 341601 48 0 96 0 Unrestricted 0.0 Metagenome 3300005940 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_25-Nov-14 DOE Joint Genome Institute (JGI) 3300005940 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 581145713 2188782 1049 134 2203 263 SRX2838886 Unrestricted 0.0 Metagenome 3300027831 *Microbiome Permanent Draft Wetland sediment microbial communities from St. Louis River estuary, Michigan under dissolved organic matter induced mercury methylation Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027831 Metagenome Analysis spades v. 3.11.1 Yes Yes diana.nemergut@duke.edu.deleted Diana Nemergut No Environmental Aquatic Wetlands Freshwater Sediment Wetland sediment 46.6972164 -92.3279105 929825911 2146848 702 12 1197 38 SRX2775466 Unrestricted 0.0 Metagenome 3300035455 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18A_1a_16_8 mgh University of Alberta 3300035455 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 67843939 87081 37 1 44 2 0.0 Metagenome 3300015069 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4C, Ice margin, adjacent to proglacial lake University of Bristol 3300015069 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.156843 -50.082361 6.01 82284058 143985 75 3 131 3 0.0 Metagenome 3300002400 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 26AUG2009 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002400 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 43427709 103683 89 22 164 41 SRX1988276 Unrestricted 0.0 Metagenome 3300060649 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Caribou Creek Watershed, Alaska, USA - BONA_001-O-20210708-comp-1 DOE Joint Genome Institute (JGI) 3300060649 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Terrestrial soil 65.174447 -147.478155 2171833206 3590934 524 207 857 280 Unrestricted 16.55 Metagenome 3300027517 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027517 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 199614033 560971 342 177 630 254 SRX3311927 Unrestricted 0.0 Metagenome 3300026502 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T-25.r1 DOE Joint Genome Institute (JGI) 3300026502 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 262912563 516935 193 29 255 48 SRX4549819, SRX7705818 Unrestricted 0.0 Metagenome 3300014494 *Microbiome Permanent Draft Permafrost microbial communities from Stordalen Mire, Sweden Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG DOE Joint Genome Institute (JGI) 3300014494 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rich.270@osu.edu Virginia Rich Yes 30013118 Environmental Terrestrial Wetlands Soil Permafrost Fen 68.35 19.05 1575428026 3091799 1005 6 1826 10 SRX3593704 Unrestricted 7.34 Metagenome 3300056711 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.4C.10 SIP fraction DOE Joint Genome Institute (JGI) 3300056711 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 148581006 264085 137 6 270 8 Unrestricted 12.87 Metagenome 3300012615 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100656 University of Pennsylvania 3300012615 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17936771 44281 22 3 37 6 SRX756438 0.0 Metagenome 3300015087 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6A, Proglacial plain, adjacent to northern proglacial tributary) University of Bristol 3300015087 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.155592 -50.08499 5.73 118301737 292917 140 6 234 7 0.0 Metagenome 3300030655 *Microbiome Permanent Draft Marine deep subsurface microbial communities from Pacific Ocean near coastal Oregon, USA Marine deep subsurface microbial communities from Pacific Ocean near coastal Oregon, USA - C1H3b Georgia Institute of Technology 3300030655 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Deep subsurface Marine Deep subsurface Marine deep subsurface 44.6 -125.1 88574550 165947 27 0 23 1 SRX1251866 0.0 Metagenome 3300043708 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - Rondonia_Forest_2_A10cm DOE Joint Genome Institute (JGI) 3300043708 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.134 -62.889 690177668 1797729 303 6 560 14 Unrestricted 8.82 Metagenome 3300014273 *Microbiome Permanent Draft Activated sludge bacterial and viral communities from EBPR bioreactors in Australia Activated sludge bacterial and viral communities from EBPR bioreactors in Queensland, Australia - SBR4-V91801 California Institute of Technology 3300014273 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Activated sludge -27.49999 153.01209 6208522 15670 14 0 17 0 SRX1100504 0.0 Metagenome 3300028810 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151 DOE Joint Genome Institute (JGI) 3300028810 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92057636 -106.94874802 936169881 2518967 595 46 1079 75 SRX5354689 Unrestricted 9.92 Metagenome 3300069519 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_002-O-20170717-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069519 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 91724113 245160 79 19 147 21 0.0 Metagenome 3300030047 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E2_3 DOE Joint Genome Institute (JGI) 3300030047 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 1674845308 3933919 1536 154 2555 241 SRX5357454 Unrestricted 13.09 Metagenome 3300038489 *Microbiome Permanent Draft Ruminant gut microbial communities from various locations in USA Sheep rumen microbial communities from Wyoming, USA - O_aries_Con_1220 University of Missouri 3300038489 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen 41.314168 -105.584589 59686581 76202 50 0 87 0 SRX331746 0.0 Metagenome 7000000521 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 159005010 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000521 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 93724519 134108 0 0 0 0 0.0 Metagenome 3300069358 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_004-M-20160727-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069358 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 22375032 69895 94 3 200 3 0.0 Metagenome 3300037472 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Unnamed Lake-9 #423 DOE Joint Genome Institute (JGI) 3300037472 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4768 78.2789 679763227 1385331 474 105 749 155 SRX9174199 Unrestricted 11.34 Metagenome 3300040534 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Barrow Environmental Observatory, Tundra, AK, USA - BARR_052-O-20170808-COMP-DNA1 Battelle Memorial Institute 3300040534 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 71.28241 -156.61936 2948724 8252 16 0 18 0 0.0 Metagenome 3300013253 *Microbiome Permanent Draft Marine hypoxic microbial communities from the Gulf of Mexico, USA Marine hypoxic microbial communities from the Gulf of Mexico, USA - 10m_Station4_GOM_Metagenome Georgia Institute of Technology 3300013253 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 176187410 385323 119 3 183 3 SRX958300 0.0 Metagenome 3300038535 *Microbiome Permanent Draft Seawater viral communities from Osaka Bay, Japan Seawater viral communities from Osaka Bay, Japan - OBV_V5 Kyoto University 3300038535 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Seawater 34.1928 135.0715 6669327 17729 0 0 0 0 0.0 Metagenome 3300000902 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O2 DOE Joint Genome Institute (JGI) 3300000902 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 14622935 45777 151 101 254 192 SRX1985648, SRX1985647 Unrestricted 0.0 Metagenome 3300027438 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A3a-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300027438 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 31256952 98344 112 0 191 0 SRX1991139 Unrestricted 0.0 Metagenome 3300000444 *Microbiome Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine sediment microbial community from La Parguera, Puerto Rico - PR Tt Sediment 1 DOE Joint Genome Institute (JGI) 3300000444 Metagenome Analysis released based on JGI ITS Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Intertidal zone Marine Unclassified Enviromental 17.9675 -67.018833 10852089 26822 13 3 40 4 Unrestricted 0.0 Metagenome 3300042952 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-435 Genome Quebec 3300042952 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 52.738966 -109.652625 738375509 1597036 251 15 359 29 0.0 Metagenome 3300014625 *Microbiome Permanent Draft Human bile duct microbial communities from gallstone patients in Hangzhou, China Human bile duct microbial communities from gallstone patients in Hangzhou, China - A1_bile Beijing Institution of Radiation Medicine 3300014625 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Biliary tract Digestive system Bile ducts: Bile Human bile duct 18864944 24377 5 5 4 3 SRX957011, SRX957005 0.0 Metagenome 3300070486 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountains, Colorado, USA - RMNP_002-O-20170807-COMP-DNA1 Battelle Memorial Institute 3300070486 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 40.197386 -105.472276 5.08-5.98 72321755 211334 103 4 187 7 0.0 Metagenome 3300032187 *Microbiome Permanent Draft STAs constructed wetland biome Wetland sediment microbial communities from Everglades, Florida, USA - STA88-Sample08_1 University of Florida 3300032187 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy No Yes ng.hanh24@gmail.com Hanh Nguyen No Environmental Aquatic Wetlands Freshwater Sediment sediment 26.38 -80.51 6.6-8.4 38874646 54154 20 0 32 0 0.0 Metagenome 3300045954 *Microbiome Permanent Draft Sediment microbial communities from various rivers and their estuaries in the United States Sediment microbial communities from Mad River, California, United States - BTRS19_Sengupta_13F DOE Joint Genome Institute (JGI) 3300045954 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sg.aditi@gmail.com Aditi Sengupta No Environmental Aquatic River Freshwater Sediment sediment 40.9138 -124.0672 1381926979 2240122 605 118 914 161 Unrestricted 13.39 Metagenome 3300000222 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P12 500m DOE Joint Genome Institute (JGI) 3300000222 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 48.97 -130.666667 174490890 430705 158 14 350 17 Unrestricted 0.0 Metagenome 3300025289 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 2 (version 2) DOE Joint Genome Institute (JGI) 3300025289 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 26033198 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 1441447594 3106547 1245 9 2261 38 SRX1990949 Unrestricted 0.0 Metagenome 3300036886 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-3-X2 DOE Joint Genome Institute (JGI) 3300036886 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0467 444463202 785882 310 1 507 1 SRX8138107 Unrestricted 12.69 Metagenome 3300039745 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 027_R1_022417 University of Maryland 3300039745 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.19846667 24.96981944 40456617 85835 109 3 174 4 0.0 Metagenome 3300027757 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027757 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 693641189 1534349 810 159 1307 243 SRX2753549 Unrestricted 0.0 Metagenome 3300025814 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWC_D1 (SPAdes) DOE Joint Genome Institute (JGI) 3300025814 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 37.926434 -122.509186 300931930 563777 261 2 402 5 SRX7142939 Unrestricted 0.0 Metagenome 3300001635 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF009 DOE Joint Genome Institute (JGI) 3300001635 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 15401296 52529 28 1 44 0 SRX2014330 Unrestricted 0.0 Metagenome 3300025267 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025267 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 38.55 13.18 270440572 542384 76 1 95 0 SRX2753796 Unrestricted 0.0 Metagenome 3300008944 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T18 (1) (Live), Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2) Shell Corporation 3300008944 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, nicolas.tsesmetzis@shell.com; ianhead@ncl.ac.uk Ian Head, Nicolas Tsesmetzis; Ian Head No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 143481774 494694 156 1 339 2 0.0 Metagenome 3300015191 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Storglaciaren, Tarfala, Sweden (Sample st-10 : a,b,c samples pooled, hydrological sediment from glacier outflow) University of Bristol 3300015191 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.904568 18.607115 7.6 219250082 469439 223 12 349 32 0.0 Metagenome 3300047395 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mississippi River, Louisiana, USA - NASQAN2016_057 DOE Joint Genome Institute (JGI) 3300047395 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 8224745 27013 36 11 67 10 Unrestricted 74.55 Metagenome 7000000314 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 763961826 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000314 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 10486968 17412 0 0 0 0 SRX101406, SRX024114 0.0 Metagenome 3300043591 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 098-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043591 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9277 -106.9803 270064092 792261 406 21 761 30 Unrestricted 8.14 Metagenome 3300027106 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF031 (SPAdes) DOE Joint Genome Institute (JGI) 3300027106 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 22179385 66275 42 2 81 2 SRX2014347 Unrestricted 0.0 Metagenome 3300042646 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A37 University of California, Davis 3300042646 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 242010575 651823 291 3 577 4 0.0 Metagenome 3300011571 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway missing -P00574 Weill Cornell Medical College 3300011571 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Unclassified City subway 40.69 -73.98 27575405 36616 12 0 23 0 SRX822541 0.0 Metagenome 3300026535 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq) DOE Joint Genome Institute (JGI) 3300026535 Metagenome Analysis spades v. 3.11.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9888 -108.3994 658030837 1394356 457 19 740 26 SRX5340872, SRX5340871 Unrestricted 0.0 Metagenome 3300049909 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - C9_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049909 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 77296141 169390 167 3 303 7 Unrestricted 0.0 Metagenome 3300015360 *Microbiome Permanent Draft Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.BULKMAT1 DOE Joint Genome Institute (JGI) 3300015360 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dysumner@ucdavis.edu Dawn Sumner No Environmental Aquatic Lake Freshwater Microbial mats freshwater microbial mat -77.5281 161.59 3893927948 6620079 2080 227 3069 389 SRX3539175, SRX3539174 Unrestricted 0.0 Metagenome 3300055384 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.19C.15 SIP fraction DOE Joint Genome Institute (JGI) 3300055384 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 214548815 391166 67 31 116 41 Unrestricted 10.89 Metagenome 3300042519 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jun2013-rr0643 DOE Joint Genome Institute (JGI) 3300042519 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1104578549 1716725 324 51 432 77 Unrestricted 22.82 Metagenome 3300071038 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_002-M-20140314-COMP-DNA1 3300071038 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 776780 2623 9 2 27 4 0.0 Metagenome 3300011449 *Microbiome Permanent Draft Synthetic microbial community assembled from nine heterogeneous microorganisms from Italy Synthetic microbial community assembled from nine heterogeneous microorganisms from Italy - 9MM-B Porto Conte Ricerche 3300011449 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 5644637 9476 4 2 9 4 SRX347877 0.0 Metagenome 3300005555 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_12_40cm DOE Joint Genome Institute (JGI) 3300005555 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2315963321 6670153 1941 27 3332 51 SRX2727835 Unrestricted 0.0 Metagenome 3300026148 *Microbiome Permanent Draft Utah desert microbiome from environmental samples near Hanksville, Utah, USA Rock biofilm microbial communities from Utah desert near Hanksville, Utah, USA - GBS McGill University 3300026148 Metagenome Analysis canu v. 1.7 released by Catherine Maggiori No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Terrestrial Unclassified Soil Desert Rock biofilm 38.41627709 -110.78444637 7342719 10484 16 0 22 0 0.0 Metagenome 7000000566 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 159814214 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000566 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 10863726 18287 0 0 0 0 SRX024555, SRX024556 0.0 Metagenome 3300049229 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB1 DOE Joint Genome Institute (JGI) 3300049229 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 130856790 336521 278 6 600 6 Unrestricted 20.76 Metagenome 3300039910 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_001-M-20170612-COMP-DNA1 Battelle Memorial Institute 3300039910 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 24463512 64058 58 4 102 6 0.0 Metagenome 3300028886 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_04 DOE Joint Genome Institute (JGI) 3300028886 Metagenome Analysis spades v. 3.11.1 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen 49.6935 -112.8418 2155694303 3417970 1492 37 1890 42 SRX5786935, SRX5786934 Unrestricted 0.0 Metagenome 3300027233 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1550B-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027233 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2328 -123.878 201241331 406300 214 12 369 17 SRX2753726 Unrestricted 15.6 Metagenome 2008193001 *Microbiome Permanent Draft Marine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica Marine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica - Winter v1 DOE Joint Genome Institute (JGI) 2008193001 Metagenome Analysis lucy / pga No Yes alison.murray@dri.edu Alison Murray No Environmental Aquatic Oceanic Marine Photic zone Marine -64.766667 -64.05 12733012 21193 3 0 8 0 Unrestricted 0.0 Metagenome 3300042358 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME23Apr2001-rr0804 DOE Joint Genome Institute (JGI) 3300042358 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 224358831 373026 96 85 137 102 Unrestricted 31.75 Metagenome 3300005369 *Microbiome Permanent Draft Human periodontal pocket microbial communities from Stanford, California, USA Human periodontal pocket microbial communities from Stanford, California, USA - TM7c DOE Joint Genome Institute (JGI) 3300005369 Metagenome Analysis Newbler and Forge Assembly No Yes JGI automated process Yes 17620602 Host-associated Mammals: Human Oral cavity Digestive system Periodontal pockets Human oral 37.429308 -122.169514 474179 630 0 0 4 0 0.0 Metagenome 3300000308 *Microbiome Permanent Draft Alviniconcha endosymbiont microbial communities from the Eastern Lau Spreading center hydrothermal vents, Pacific Ocean Epsilon Harvard University 3300000308 Metagenome Analysis released per JGI data release policy No Yes rbeinart@fas.harvard.edu Roxanne Beinart No Host-associated Mollusca Gills Respiratory system Intracellular Alviniconcha endosymbiont -20.05361 -176.13333 1911618 2388 1 1 1 2 0.0 Metagenome 3300070734 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_004-O-20170731-COMP-DNA1 3300070734 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 49931393 152183 138 25 292 45 0.0 Metagenome 3300046661 *Microbiome Permanent Draft Soil microbial communities from Blodgett Forest Research Station, California, USA Soil microbial communities from Blodgett Forest Research Station, California, USA - BWE201406031C1020 DOE Joint Genome Institute (JGI) 3300046661 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.912 -120.6615 137123734 246420 150 41 305 51 Unrestricted 17.95 Metagenome 3300001440 *Microbiome Permanent Draft Mangrove swamp biosurfactant microbial communities from Bertioga, Sao Paulo, Brazil Fosmid_A6 3300001440 Metagenome Analysis released by JGI data releasing policy No Yes dfdomingos@uol.com.br Daniela Domingos, Daniela F. Domingos No Environmental Aquatic Oceanic Marine Sediment Mangrove swamp biosurfactant -23.89694 -46.20778 24878 29 0 0 0 0 0.0 Metagenome 3300025031 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-25 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025031 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 494131393 836973 442 7 633 12 SRX3198636 Unrestricted 0.0 Metagenome 3300037553 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR09_11 DOE Joint Genome Institute (JGI) 3300037553 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Crustal Fluids crustal fluids 47.7538 -127.7637 1127742629 2476028 845 195 1477 308 SRX9096383 Unrestricted 23.15 Metagenome 3300049735 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_151209.NP2 DOE Joint Genome Institute (JGI) 3300049735 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 1179001524 2651737 786 127 1363 201 Unrestricted 11.53 Metagenome 3300031689 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #280 DOE Joint Genome Institute (JGI) 3300031689 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5596 77.8957 324192946 739225 190 222 269 381 SRX5650093 Unrestricted 0.0 Metagenome 3300014871 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231_16_1Da DOE Joint Genome Institute (JGI) 3300014871 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9225 -106.9515 174441891 418041 238 9 495 16 SRX3780509 Unrestricted 4.55 Metagenome 3300008589 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765640925 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008589 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 106628167 161428 84 0 123 0 0.0 Metagenome 3300006051 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 DOE Joint Genome Institute (JGI) 3300006051 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Host-associated Plants Endosphere Roots Unclassified Populus endosphere 35.8443 -83.9607 3169217263 9548955 2966 161 5273 294 SRX2748468 Unrestricted 0.0 Metagenome 3300042193 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A11 University of California, Davis 3300042193 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 182545719 523101 272 5 529 10 0.0 Metagenome 3300007860 *Microbiome Permanent Draft Microbial communities from Columbia River Estuary, Oregon, USA Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1372A_3um Oregon State University 3300007860 Metagenome Analysis megahit released per JGI data release policy Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Coastal Marine Unclassified estuary water 46.234 -123.9163 225328129 462670 300 204 505 303 0.0 Metagenome 3300023025 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung G1 DOE Joint Genome Institute (JGI) 3300023025 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Elk feces 38.04 -122.5 56493997 144297 332 1 637 3 SRX4415397 Unrestricted 8.09 Metagenome 3300013851 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metalplastic -P00642 Weill Cornell Medical College 3300013851 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface City subway metal/plastic 40.8 -73.95 16071439 23519 15 0 19 0 SRX822609 0.0 Metagenome 3300048545 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - Maria605 DOE Joint Genome Institute (JGI) 3300048545 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Sand Soil Desert sand -78.0986 163.896 184074901 403115 165 0 251 1 Unrestricted 0.0 Metagenome 3300002956 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic Ocean affecting the dissolved organic carbon pool Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - 250m_A/KNORR_S2/LV DOE Joint Genome Institute (JGI) 3300002956 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -37.9983 -44.9998 149469971 366205 309 23 534 34 SRX2566716 Unrestricted 0.0 Metagenome 3300017997 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex DOE Joint Genome Institute (JGI) 3300017997 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 1 493270987 1115595 510 7 983 7 SRX3938897 Unrestricted 4.91 Metagenome 3300028996 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 335_12M Beijing Genomics Institute (BGI) 3300028996 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 45308203 50877 36 0 61 0 ERX491083 0.0 Metagenome 3300043184 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from California, United States - Warm Spring A (WSA_S1) (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043184 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified Desert spring 37.2656 -118.2713 7.62 727224507 896015 288 26 398 47 SRX9470708 Unrestricted 66.55 Metagenome 3300026467 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A DOE Joint Genome Institute (JGI) 3300026467 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 168764688 422484 155 29 328 46 SRX4801796 Unrestricted 8.66 Metagenome 3300006622 *Microbiome Permanent Draft Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia - TJ08 time point Australian Centre for Ecogenomics 3300006622 Metagenome Analysis CLC released per JGI data release policy No Yes crinke@lbl.gov Christian Rinke No Environmental Aquatic Coastal Marine Unclassified marine surface water -34.1192 151.2267 207917775 267691 37 7 36 8 0.0 Metagenome 3300041829 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - C_31_wk_2 DOE Joint Genome Institute (JGI) 3300041829 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9617 -107.031 202919767 607126 337 22 624 27 SRX14808250 Unrestricted 8.07 Metagenome 3300044830 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_24CS DOE Joint Genome Institute (JGI) 3300044830 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.3724 -106.103 915869967 1485674 244 60 384 85 SRX20649991 Unrestricted 14.32 Metagenome 3300005768 *Microbiome Permanent Draft Human lung microbial communities from healthy (non-smokers and smokers) and HIV infected subjects Human lung microbial communities from HIV infected subject HIV5-1 New York University Langone Medical Center 3300005768 Metagenome Analysis Shotgun released per JGI data release policy No Yes leopoldo.segal@nyumc.org Leopoldo N Segal No Host-associated Mammals: Human Lung Respiratory system Unclassified Lung Microbiome 40.7127 -74.0059 24584735 73078 7 1 7 1 0.0 Metagenome 3300042759 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N1_20_30 NMDC pilot DOE Joint Genome Institute (JGI) 3300042759 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380143 -119.2723688 159709266 388002 160 0 321 0 SRX2522697 0.0 Metagenome 3300000709 *Microbiome Draft Soil microbial communities from Kansas Great Prairie, USA, amended with BrdU Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA F1.4 TB amended with BrdU and acetate no abondance DOE Joint Genome Institute (JGI) 3300000709 Metagenome Analysis clc workbench released based on JGI ITS Yes Yes maude.david@yahoo.fr, janet.jansson@pnnl.gov Maude David, Janet Jansson No Environmental Terrestrial Loam Soil Grasslands Soil 39.0042816 -77.1012173 84550804 270522 262 0 491 4 Unrestricted 0.0 Metagenome 3300055560 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.17C.15 SIP fraction DOE Joint Genome Institute (JGI) 3300055560 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 241269455 437134 81 41 141 58 Unrestricted 10.95 Metagenome 3300005715 *Microbiome Permanent Draft Wild Panda gut microbial communities from Shaanxi, China Wild Panda gut microbiome from Saanxi China, sample from individual w2 Beijing Genomics Institute (BGI) 3300005715 Metagenome Analysis SOAPdenovo assembler No Yes ribozyme@ioz.ac.cn Wu Qi Yes 22006317 Host-associated Mammals Large intestine Digestive system Fecal Wild Panda gut 33.963333 107.618056 12127743 16328 5 2 12 5 0.0 Metagenome 3300025696 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic Microbial community sample from North Sea - COGITO 998_met_02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025696 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 27054497, 31316134 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Pelagic marine 54.184167 7.9 499596390 901917 305 59 431 106 SRX802982 Unrestricted 0.0 Metagenome 3300012582 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG DOE Joint Genome Institute (JGI) 3300012582 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 1690119896 3406829 861 70 1602 126 SRX3372601 Unrestricted 0.0 Metagenome 3300051371 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - ATCR3C-14 DOE Joint Genome Institute (JGI) 3300051371 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 128695572 196957 110 9 153 9 Unrestricted 157.05 Metagenome 3300029499 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI003285-123 Beijing Genomics Institute (BGI) 3300029499 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 88015893 98305 57 0 86 1 0.0 Metagenome 3300009157 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 DOE Joint Genome Institute (JGI) 3300009157 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wilkins.231@osu.edu, mike.wilkins@colostate.edu Michael Wilkins No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0956 -99.1001 1312037992 2600320 823 8 1501 8 SRX2753774 Unrestricted 0.0 Metagenome 2070309001 *Microbiome Permanent Draft Drinking water microbial communities from Ohio, US, that has been chlorinated or chloraminated Drinking water microbial communities from Ohio, US, that has been chlorinated or chloraminated - sample 11520 454 Life Sciences 2070309001 Metagenome Analysis Newbler released per JGI data release policy No Yes matlib.robin@epamail.epa.gov Robin Matlib No Environmental Aquatic Drinking water Freshwater Unclassified Drinking water 39.8 -84.3 12493933 28882 12 0 36 0 0.0 Metagenome 3300025143 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Lake sediment bacterial and archeal communities from Gulf of Boni, Indonesia to study Microbial Dark Matter (Phase II) - ?I19B2 metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025143 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; aurele.vuillemin@gfz-potsdam.de Ramunas Stepanauskas; Aurele Vuillemin No Environmental Aquatic Lake Freshwater Sediment Lake sediment -2.75 121.05 7.2-7.4 681736381 1644399 586 2 1170 1 SRX2525677 Unrestricted 0.0 Metagenome 3300043000 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver stomach microbial communities from Maple Ridge, British Columbia, Canada - Beaver1Stomach1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043000 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Stomach Digestive system Unclassified stomach 49.18 -122.54 67174652 139312 248 12 405 26 SRX8344119 Unrestricted 48.01 Metagenome 3300054953 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Schonbrunner Wald, Bavaria, Germany - BW_CO_036D DOE Joint Genome Institute (JGI) 3300054953 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.904464 13.563778 891267026 2063893 382 42 687 85 Unrestricted 0.0 Metagenome 3300000935 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 40 DOE Joint Genome Institute (JGI) 3300000935 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 22162570 64151 44 0 85 0 SRX1985055 Unrestricted 0.0 Metagenome 3300038502 *Microbiome Draft Microbial communities from sediments and seawater samples from Gulf of Mexico Marine sediment microbial communities from Coatzacoalco region, Gulf of Mexico, Mexico - C13_station Ensenada Center for Scientific Research and Higher Education, Baja California 3300038502 Metagenome Analysis megahit v. 1.1.2 released by JGI data releasing policy Yes Yes metagenomics.group@gmail.com Asuncion Lago No Environmental Aquatic Sediment Marine Unclassified Marine Sediments 20.5965167 -94.3132 130915056 320775 133 2 283 6 0.0 Metagenome 3300020496 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 01NOV2011 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020496 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 62438126 139557 60 21 87 19 SRX1989704 Unrestricted 0.0 Metagenome 3300036810 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C5-7A DOE Joint Genome Institute (JGI) 3300036810 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 181000419 558769 382 13 681 26 SRX8798855 Unrestricted 4.86 Metagenome 3300027014 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 4 (SPAdes) DOE Joint Genome Institute (JGI) 3300027014 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 102013575 241417 80 0 191 0 SRX4338205 Unrestricted 0.0 Metagenome 3300006176 *Microbiome Permanent Draft Soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, under manipulated climate change conditions. Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 DOE Joint Genome Institute (JGI) 3300006176 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jmtalbot@bu.edu, jmtalbot@bu.edu; ptempler@bu.edu Jennifer Talbot, Jennifer Bhatnagar; Pamela Templer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 4941882266 13742264 2053 155 3732 243 SRX2838822 Unrestricted 0.0 Metagenome 3300013458 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100486 University of Pennsylvania 3300013458 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4685243 13228 11 0 12 0 SRX756512 0.0 Metagenome 3300044529 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Soil microbial communities from peatland in Alberta, Canada - SB-09-mossy 0-10 cm DOE Joint Genome Institute (JGI) 3300044529 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4741 -114.8678 600969771 974014 228 43 380 67 Unrestricted 13.3 Metagenome 3300011188 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #563 DOE Joint Genome Institute (JGI) 3300011188 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 339573373 635259 122 55 178 79 SRX2526869 Unrestricted 0.0 Metagenome 3300007258 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 DOE Joint Genome Institute (JGI) 3300007258 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Saprolite Vadose zone soil 39.7291 -123.6419 900545566 1788967 456 14 814 32 SRX2752507 Unrestricted 0.0 Metagenome 3300026489 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A DOE Joint Genome Institute (JGI) 3300026489 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 201545134 510820 209 26 422 50 SRX4802249 Unrestricted 10.14 Metagenome 3300018023 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100 DOE Joint Genome Institute (JGI) 3300018023 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 938628001 1742141 575 22 1000 38 SRX3960723 Unrestricted 13.52 Metagenome 3300013737 *Microbiome Permanent Draft Coral viral communities from the Great Barrier Reef, Australia Coral viral communities from the Great Barrier Reef, Australia - Pocillopora damicornis (fresh isolate) - PDam_DNA_MDA_NLN Australian Institute of Marine Science 3300013737 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral tissue 25608059 48872 9 7 26 8 SRX503391 0.0 Metagenome 3300009706 *Microbiome Permanent Draft Marine microbial communities from western Arctic Ocean Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86 DOE Joint Genome Institute (JGI) 3300009706 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh Yes 30271971 Environmental Aquatic Oceanic Marine Unclassified Marine 79.2466 -150.0613 2046087579 3829347 1288 195 2078 298 SRX2997513 Unrestricted 0.0 Metagenome 3300060364 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210614_18_01 DOE Joint Genome Institute (JGI) 3300060364 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 477890970 681863 244 142 294 179 Unrestricted 31.7 Metagenome 3300001602 *Microbiome Finished Human fecal microbial communities from the University of Tokyo, Japan, of healthy Japanese infants and adults Human fecal microbial communities from the University of Tokyo - healthy human sample F1-S, Adult, Male 3300001602 Metagenome Analysis PCAP released per Nikos No Yes hattori@k.u-tokyo.ac.jp Hattori M Yes 17916580 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 35.71 139.76 0 0 0 0 0 0 0.0 Metagenome 3300046809 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere DOE Joint Genome Institute (JGI) 3300046809 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.121 -123.2707 1085990278 1757119 352 110 515 141 Unrestricted 13.44 Metagenome 3300070410 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_043-M-20190717-COMP-DNA1 3300070410 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 7780009 25075 35 7 63 9 0.0 Metagenome 3300047287 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Altamaha River, Georgia, USA - NASQAN2015_172 DOE Joint Genome Institute (JGI) 3300047287 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 434868965 948992 339 51 608 103 Unrestricted 16.79 Metagenome 3300020520 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 02JUN2010 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020520 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 106673611 211506 80 40 142 57 SRX1988690 Unrestricted 0.0 Metagenome 3300028376 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla E10 #628 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028376 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 169577739 313205 172 17 262 41 SRX3296547 Unrestricted 0.0 Metagenome 3300041452 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG AgResearch, New Zealand, Mosgeil 3300041452 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Rhizoplane Roots Dairy farm pasture -43.648506 172.343549 1108965328 2460546 259 42 796 125 0.0 Metagenome 3300006624 *Microbiome Permanent Draft Soil microbial communities from the Leymus chinensis steppe, China - nitrogen deposition Soil microbial communities from the Leymus chinensis steppe, China - after adding 1.75 g N m- 2, yr-1 Chengdu Institute of Biology, Chinese Academy of Sciences 3300006624 Metagenome Analysis velvet released per JGI data release policy No Yes ruijp@cib.ac.cn Junpeng Rui No Environmental Terrestrial Unclassified Soil Unclassified soil 43.63 116.7 226052258 994234 311 27 712 63 0.0 Metagenome 3300000536 *Microbiome Draft Soil microbial communities from the Kellog Biological Station, Michigan, US, in response to alternate cropping systems Switchgrass Nitrogen 406 pre-fert 2011 DOE Joint Genome Institute (JGI) 3300000536 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes tschmidt@msu.edu Thomas Schmidt, Thomas M. Schmidt No Environmental Terrestrial Unclassified Soil Agricultural land Soil 42.405849 -85.384504 23153078 64312 233 12 464 24 Unrestricted 0.0 Metagenome 3300053158 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere DOE Joint Genome Institute (JGI) 3300053158 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.588251 -123.194029 848608475 1645841 397 144 677 218 Unrestricted 11.14 Metagenome 3300012584 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100630 University of Pennsylvania 3300012584 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12482430 33178 19 1 24 3 SRX756464 0.0 Metagenome 3300034977 *Microbiome Finished Coastal sediment microbial communities from Western Antarctica Coastal sediment microbial communities from Western Antarctica - 11_event26 Megahit 26 Michigan State University 3300034977 Metagenome Analysis Megahit v. 1.1 released by Deric Learman No Yes deric.learman@cmich.edu Deric Learman No Environmental Aquatic Coastal Marine Sediment marine sediment -72.2974 -104.2981 388289066 845360 198 32 418 44 0.0 Metagenome 3300009820 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S3_50_60 DOE Joint Genome Institute (JGI) 3300009820 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen Yes 29920461 Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228508 -119.2716818 180869480 395193 182 1 355 3 SRX2523284 Unrestricted 0.0 Metagenome 3300022696 *Microbiome Permanent Draft Carpinteria Salt Marsh Metagenomes 2014 to 2017 Marine microbialite microbial communities from marsh intertidal zone in Carpinteria, CA, United States - B4 University of California, Irvine 3300022696 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Aquatic Intertidal zone Marine Microbialites Microbialites 34.401 -119.534 200516181 214102 47 3 64 4 0.0 Metagenome 3300002715 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A5w-12 DOE Joint Genome Institute (JGI) 3300002715 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 426744 1453 22 0 47 2 SRX1991256 Unrestricted 0.0 Metagenome 3300010263 *Microbiome Permanent Draft Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 16_60_3.3_214_A3 metaG DOE Joint Genome Institute (JGI) 3300010263 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes Steve.Brown@lanzatech.com Steven Brown Yes 30202438 Engineered Bioreactor Anaerobic Semi-continuous Digestate Switchgrass degrading 43.726 -72.1429 219399360 342861 424 2 610 5 SRX3291932 Unrestricted 0.0 Metagenome 3300026007 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWC_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300026007 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 37.926434 -122.509186 428254177 772410 288 2 451 2 SRX7142963 Unrestricted 0.0 Metagenome 3300022143 *Microbiome Permanent Draft Enriched microbial communities from anaerobic bioreactor in Madison, Wisconsin, United States Xylose enriched microbial communities from anaerobic bioreactor in Madison, Wisconsin, United States - 17X DOE Joint Genome Institute (JGI) 3300022143 Metagenome Analysis spades v. 3.11.1-check Yes Yes noguera@engr.wisc.edu Daniel Noguera Yes 35343806 Engineered Bioreactor Unclassified Anaerobic Unclassified Xylose enrichment biomass 43.0737 -89.4147 41427639 57281 49 1 54 1 SRX5337692, SRX5337691 Unrestricted 402.46 Metagenome 3300008749 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763759525 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008749 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 56677023 102388 47 0 69 0 0.0 Metagenome 2013338002 *Microbiome Permanent Draft Macropus eugenii forestomach microbial communities from Canberra, Australia Macropus eugenii forestomach microbial communities from Canberra, Australia - Macropus_eugenii_Sept07 DOE Joint Genome Institute (JGI) 2013338002 Metagenome Analysis lucy / pga released per Simon -- IMGSUPP2949 No Yes mark.morrison@csiro.au Mark Morrison Yes 20668243 Host-associated Mammals Stomach Digestive system Forestomach Macropus eugenii forestomach -35.310643 149.124184 26541443 39773 23 0 38 0 0.0 Metagenome 3300027012 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius sp. 5 HERON ISLAND (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027012 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 147540479 228865 6 1 9 3 SRX2711973 Unrestricted 0.0 Metagenome 3300046353 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_144 DOE Joint Genome Institute (JGI) 3300046353 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9703 -106.997 36825319 119540 127 33 264 47 Restricted 0.0 Metagenome 3300037498 *Microbiome Permanent Draft Sediment microbial communities from various lakes in Switzerland Sediment microbial communities from Lake Lucerne, Nidwalden, Switzerland - LL_9 DOE Joint Genome Institute (JGI) 3300037498 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mark.lever@usys.ethz.ch Mark Alexander Lever No Environmental Aquatic Lake Freshwater Sediment sediment 46.9968 8.347 681090011 1132797 302 1 501 2 SRX9148213 Unrestricted 14.3 Metagenome 3300043251 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_7 (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043251 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 576504678 941931 114 3 219 7 SRX9140452 Unrestricted 42.29 Metagenome 3300056627 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - LS01-2021-001 DOE Joint Genome Institute (JGI) 3300056627 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 336316537 348893 146 11 139 12 Unrestricted 36.46 Metagenome 3300048785 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 P2 40-44 DOE Joint Genome Institute (JGI) 3300048785 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3535 19.0472 402089483 613441 139 2 210 6 Restricted 22.87 Metagenome 3300038504 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Sweden Sewage microbial communities from sewage treatment plant in Sweden - SWESTP35 - Kappala-influent 147 University of Gothenburg 3300038504 Metagenome Analysis Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified sewage 59.355554 18.227079 126162771 326270 284 15 544 19 0.0 Metagenome 3300028595 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Marine sediment archaeal communities from Little Sippewissett salt marsh, Falmouth, MA, United States - SSM-MMB-Aug17 DOE Joint Genome Institute (JGI) 3300028595 Metagenome Analysis spades v. 3.11.1 Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 585467624 1042571 212 13 322 31 SRX5283493 Unrestricted 70.89 Metagenome 3300049188 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - G6_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049188 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 394523186 822504 515 20 903 37 Unrestricted 0.0 Metagenome 3300031716 *Microbiome Permanent Draft Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3 DOE Joint Genome Institute (JGI) 3300031716 Metagenome Analysis spades v. 3.12.0 Yes Yes colin.averill@usys.ethz.ch; jmtalbot@bu.edu Colin Averill; Jennifer Bhatnagar No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 36.0 -78.0 4332030106 10384762 2169 70 3904 126 SRX5351296 Unrestricted 6.44 Metagenome 3300001604 *Microbiome Permanent Draft Marine sediment microbial communities from the Ulleung/Tsushima Basin, Sea of Japan Marine sediment microbial communities from the Ulleung/Tsushima Basin, Sea of Japan Korea Polar Research Institute (KOPRI) 3300001604 Metagenome Analysis released per JGI data release policy No Yes trycell@daum.net Jin-Woo Lee No Environmental Aquatic Oceanic Marine Sediment Marine sediments 37.441852 132.20163 0 0 0 0 0 0 0.0 Metagenome 3300005877 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_404 DOE Joint Genome Institute (JGI) 3300005877 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 175913092 649985 439 11 889 27 SRX2564897, SRX2581043 Unrestricted 0.0 Metagenome 3300009539 *Microbiome Permanent Draft Host-associated microbial communities of aphids from plants in several locations around USA Microbial communities of aphids from Brassica oleracea in Tucson, AZ, USA - Brevicoryne brassicae seqcov University of Texas, Austin 3300009539 Metagenome Analysis CLC Genomics released per JGI data release policy Yes Yes becky.chong@utexas.edu Rebecca Chong No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Brassica oleracea 32.23184 -110.950699 281683917 141823 1 1 1 1 0.0 Metagenome 3300044271 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T68 S DOE Joint Genome Institute (JGI) 3300044271 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7674 -64.3603 363480322 903965 52 1 94 2 Unrestricted 65.88 Metagenome 3300043460 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-391 Genome Quebec 3300043460 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 54.847322 -112.508763 1083531538 2550510 447 116 812 200 0.0 Metagenome 3300060362 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210530_03_13 DOE Joint Genome Institute (JGI) 3300060362 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 502360221 771520 249 90 338 143 Unrestricted 27.52 Metagenome 3300009485 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS877 no min length Marine Biological Laboratory 3300009485 Metagenome Analysis Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow diffuse flow hydrothermal vent 18.377 -81.798 194341827 887044 153 19 457 29 0.0 Metagenome 3300029313 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 008_6_10_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029313 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 107627220 118579 69 0 126 0 0.0 Metagenome 3300055382 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.19C.13 SIP fraction DOE Joint Genome Institute (JGI) 3300055382 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 157295039 314561 110 57 223 87 Unrestricted 9.93 Metagenome 3300001220 *Microbiome Permanent Draft Switchgrass rhizosphere microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere microbial communities from Knoxville, Tennessee, USA - 11_1 University of Tennessee 3300001220 Metagenome Analysis No Yes jwang43@utk.edu Jun Wang No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 35.9606 -83.9208 1284512 4324 5 1 15 0 0.0 Metagenome 3300031088 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLB.R1 DOE Joint Genome Institute (JGI) 3300031088 Metagenome Analysis spades v. 3.12.0 Yes Yes icelab@berkeley.edu Steven Lindow No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 37.8864 -122.2981 1807510683 3229247 1088 30 1404 35 SRX5654499 Unrestricted 34.94 Metagenome 3300049571 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 DOE Joint Genome Institute (JGI) 3300049571 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.40849 -82.168434 2184603555 3359444 782 52 1176 83 Unrestricted 17.06 Metagenome 3300011909 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S04-04-D University of California, Los Angeles 3300011909 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 49858088 95495 60 1 88 0 SRX858940 0.0 Metagenome 3300021236 *Microbiome Permanent Draft Environmental DNA from river Freshwater microbial communities from Jinzu River in Toyama Prefecture, Japan-20170104_1, permeate Toyama Prefectural University 3300021236 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic River Freshwater Unclassified freshwater 36.46646 137.24724 63341812 193670 19 5 39 11 0.0 Metagenome 3300048066 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_170607.NP2 DOE Joint Genome Institute (JGI) 3300048066 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 775226636 1695589 505 67 742 130 Unrestricted 14.07 Metagenome 3300012360 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG DOE Joint Genome Institute (JGI) 3300012360 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.5673 -123.4758 2523014096 4720506 1359 30 2286 45 SRX3372743 Unrestricted 0.0 Metagenome 3300003110 *Microbiome Permanent Draft Continuous culture Bioreactor microbial community inoculated with sediment from German Wadden Sea Bioreactor microbial community inoculated from the Wadden Sea, Germany - 67 days of incubation Bielefeld University, Max Planck Institute for Marine Microbiology 3300003110 Metagenome Analysis MetaVelvet v. v0.3 Made public because these are downloaded from Genbank No Yes mstrous@mpi-bremen.de Marc Strous Yes 23227024 Engineered Bioreactor Marine sediment inoculum Continuous culture Unclassified Continuous culture Bioreactor 53.31941 5.419206 13597968 15876 18 0 33 0 0.0 Metagenome 3300004239 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG23_combo_of_CG06-09_8/20/14_all DOE Joint Genome Institute (JGI) 3300004239 Metagenome Analysis MEGAHIT v. 0.2.0 revert back to private per Christa Yes Yes jbanfield@berkeley.edu, jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield, Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 1119101521 2598625 1915 30 3134 69 SRX3367778 Unrestricted 0.0 Metagenome 3300045519 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_2_D DOE Joint Genome Institute (JGI) 3300045519 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 146303391 171581 87 2 88 2 Unrestricted 129.37 Metagenome 3300064799 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 595 in Falher, Alberta, Canada - S00JY_0638 Microbiome Insights 3300064799 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 55.45243753 -117.122471 202648311 292537 59 0 130 3 0.0 Metagenome 3300049449 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 soil DOE Joint Genome Institute (JGI) 3300049449 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Botanical garden Soil Bulk soil Soil 44.5878 -123.1939 135324970 260584 163 12 330 23 Unrestricted 27.66 Metagenome 3300002555 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - site 2 bottle 7 DOE Joint Genome Institute (JGI) 3300002555 Metagenome Analysis Yes Yes blumerschuette@oakland.edu, blumerschuette@oakland.edu; rmkelly@ncsu.edu Sara Blumer-Schuette, Sara Blumer-Schuette; Robert Kelly No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6102 -110.4387 11216427 14800 10 0 14 0 SRX2554488 Unrestricted 0.0 Metagenome 3300040505 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Jones Ecological Research Center, Southeast, GA, USA - JERC_050-M-20170725-COMP-DNA1 Battelle Memorial Institute 3300040505 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.19484 -84.46861 3355951 9947 31 2 40 4 0.0 Metagenome 3300011229 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00453 Weill Cornell Medical College 3300011229 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.71 -74.0 43308455 68581 15 0 30 1 SRX822422 0.0 Metagenome 3300070732 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_002-O-20180731-COMP-DNA1 3300070732 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 79059332 228891 138 43 296 65 0.0 Metagenome 3300001900 *Microbiome Permanent Draft Biogas fermenter microbial communities from the University of Hamburg, Germany Metagenome BioPara 09.07.13 3300001900 Metagenome Analysis released by JGI data releasing policy No Yes Guellert S; Wolfgang Streit No Engineered Solid waste Unclassified Unclassified Unclassified Biogas fermenter 129259412 515244 147 3 501 1 0.0 Metagenome 3300002369 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 14NOV2009 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002369 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 19763894 50877 52 46 65 69 SRX1988266 Unrestricted 0.0 Metagenome 3300013119 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 314m, 250-2.7um, replicate a Georgia Genomics Facility 3300013119 Metagenome Analysis IDBA 1.1.1 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 704260948 803072 218 4 266 7 0.0 Metagenome 3300014230 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 262_D2_2014-9-12 San Diego State University 3300014230 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 552558 1807 13 7 18 28 0.0 Metagenome 3300061668 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0441 Microbiome Insights 3300061668 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 640593237 883974 182 5 241 6 0.0 Metagenome 3300035500 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver small intestine microbial communities from Maple Ridge, British Columbia, Canada - Beaver2Small.Intestine1 DOE Joint Genome Institute (JGI) 3300035500 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Small intestine Digestive system Unclassified small intestine 49.18 -122.54 1515475999 2181024 100 29 192 44 SRX8344683 Unrestricted 5.39 Metagenome 3300020083 *Microbiome Permanent Draft Freshwater microbial communities from Lake Tanganyika, Tanzania Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015033 Kigoma Deep Cast 300m DOE Joint Genome Institute (JGI) 3300020083 Metagenome Analysis spades v. 3.10.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater lake -4.9054 29.4853 1929739383 3751598 1234 79 1873 109 SRX4810992 Unrestricted 22.78 Metagenome 3300013593 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100375 University of Pennsylvania 3300013593 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4468944 9020 13 5 29 7 SRX756282 0.0 Metagenome 3300020175 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2 DOE Joint Genome Institute (JGI) 3300020175 Metagenome Analysis spades v. 3.10.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling No Environmental Aquatic Epipelagic Marine Unclassified seawater 54.1841 7.9 788051098 1605305 414 104 600 185 SRX3989311 Unrestricted 37.22 Metagenome 3300026771 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A4-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026771 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 24067439 77597 104 4 155 4 SRX1991257 Unrestricted 0.0 Metagenome 3300026936 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026936 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 20553993 69490 103 2 193 2 SRX1990533 Unrestricted 0.0 Metagenome 3300002387 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 22JUN2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002387 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 30243933 77483 92 19 174 31 SRX1989777 Unrestricted 0.0 Metagenome 7000000045 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159268001 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000045 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Ivanova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 159062704 240549 0 0 0 0 0.0 Metagenome 3300011735 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01334 Weill Cornell Medical College 3300011735 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.83 -73.85 31157253 53178 31 0 42 0 SRX823274 0.0 Metagenome 3300006920 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 DOE Joint Genome Institute (JGI) 3300006920 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes chenf@umces.edu, chenf@umces.edu; bcampb7@clemson.edu Feng Chen, Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.12 -75.25 591893972 1413333 206 13 320 19 SRX3786004, SRX3786005, SRX2838768 Unrestricted 0.0 Metagenome 3300029101 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 157_M Beijing Genomics Institute (BGI) 3300029101 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 150114687 185278 126 0 218 0 ERX490964 0.0 Metagenome 3300045193 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_7_D DOE Joint Genome Institute (JGI) 3300045193 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 208905516 236344 122 1 148 1 Unrestricted 90.59 Metagenome 3300040446 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_006-M-20140618-COMP-DNA1 Argonne National Laboratory 3300040446 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 3877840 11900 32 3 65 6 ERX2134010 0.0 Metagenome 3300008348 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159268001 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008348 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 32693220 41244 37 0 46 0 0.0 Metagenome 7000000657 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159753524 replicate 1 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000657 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 36896577 72898 0 0 0 0 0.0 Metagenome 3300006200 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 765640925 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006200 Metagenome Analysis SPADES v3.6.1 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 1934787 2300 2 0 3 0 0.0 Metagenome 3300005956 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_23-Sept-14 DOE Joint Genome Institute (JGI) 3300005956 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 232182972 775729 492 99 993 152 SRX2838894 Unrestricted 0.0 Metagenome 3300007077 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Stylissa sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina ""control"", st9ic" University of New South Wales 3300007077 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au, e.botte@aims.gov.au; n.webster@aims.gov.au Nicole Webster, Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Stylissa sp. (marine sponge) -9.828217 150.820517 75624207 186453 34 3 67 6 0.0 Metagenome 3300045952 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P24SSC2_191109_f DOE Joint Genome Institute (JGI) 3300045952 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 1046591604 1608227 334 0 501 1 SRX20650057 Unrestricted 12.31 Metagenome 3300030436 *Microbiome Permanent Draft Nursing home wastewater effluent microbial communities near Freiburg, Germany Upstream nursing home wastewater effluent microbial communities near Freiburg, Germany - C1754 University of Freiburg 3300030436 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Wastewater Hospital wastewater Industrial wastewater Unclassified Upstream nursing home wastewater 48.0 8.0 9630145 22452 54 1 110 2 SRX516608 0.0 Metagenome 3300016663 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water reservoir in Singapore - WB_Site 6b, Aug Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016663 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Lake Freshwater Unclassified freshwater 1.35 103.87 80483076 100325 5 0 6 0 0.0 Metagenome 3300035187 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Sep2014-rr0145 DOE Joint Genome Institute (JGI) 3300035187 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1694124215 3401165 841 222 1318 317 SRX7710011 Unrestricted 11.25 Metagenome 3300031780 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21 DOE Joint Genome Institute (JGI) 3300031780 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 479220068 1183477 220 4 340 3 SRX5817500 Unrestricted 13.22 Metagenome 3300000904 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O3 DOE Joint Genome Institute (JGI) 3300000904 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 16560247 53268 192 113 314 200 SRX1985374, SRX2021674 Unrestricted 0.0 Metagenome 3300000442 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1 DOE Joint Genome Institute (JGI) 3300000442 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 871912 2648 37 25 64 43 SRX1985893, SRX1985892 0.0 Metagenome 3300042954 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-439 Genome Quebec 3300042954 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 52.844297 -108.858587 1555289860 3120462 457 174 758 270 0.0 Metagenome 3300025812 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_10_150 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025812 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 269856311 455413 142 1 215 0 SRX3003287 Unrestricted 0.0 Metagenome 3300021311 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen10, Rep 2 DOE Joint Genome Institute (JGI) 3300021311 Metagenome Analysis spades v. 3.11.1-check Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4149 -119.841 150005910 184406 201 1 231 2 SRX4038381 Unrestricted 147.65 Metagenome 3300055491 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.1W.10 SIP fraction DOE Joint Genome Institute (JGI) 3300055491 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 263291594 441857 241 18 357 33 Unrestricted 24.96 Metagenome 3300000224 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 10m DOE Joint Genome Institute (JGI) 3300000224 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 148111603 347117 204 70 363 95 Unrestricted 0.0 Metagenome 2166559013 *Microbiome Permanent Draft Microbial communities from the Atlantic Ocean and human feces from France, grouped together for a comparative study Marine microbial communities from the Atlantic Ocean, for comparison studies - Ocean1 (Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY01 3688) 454 Life Sciences 2166559013 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Aquatic Oceanic Marine Unclassified Environmental and host-associated 5876433 11452 698 0 7 0 0.0 Metagenome 3300022814 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S7 Version 2 University of New South Wales 3300022814 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 58395626 100031 13 9 10 18 0.0 Metagenome 3300026123 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_H2O_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026123 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Water 37.4962 -122.1329 205425471 415634 292 48 414 107 SRX2523671 Unrestricted 0.0 Metagenome 3300012191 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00752 Weill Cornell Medical College 3300012191 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.97 15682622 20687 11 0 15 0 SRX822718 0.0 Metagenome 3300008942 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T14 (1) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2) Shell Corporation 3300008942 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 128532745 422356 125 0 369 1 0.0 Metagenome 3300008404 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 764002286 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008404 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 130560240 168302 105 0 151 0 0.0 Metagenome 3300038771 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog74 BILS 3300038771 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 6941935 18167 12 1 10 3 ERX1594896 0.0 Metagenome 3300039439 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01 v2 DOE Joint Genome Institute (JGI) 3300039439 Metagenome Analysis MEGAHIT v. 1.2.7 Released on PI's request No Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Environmental Terrestrial Grasslands Soil Bulk soil bulk soil -19.28 -43.5919 1258653027 2279141 1053 44 2144 83 SRX4020416 0.0 Metagenome 3300030108 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_072 - TARA_R100001079 CEA Genoscope 3300030108 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -8.7789 -17.9099 248105960 501567 23 0 37 0 0.0 Metagenome 3300050227 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Warrenville, Illinois, USA - 69_721_IL_DR_1m_c3_T1_18O DOE Joint Genome Institute (JGI) 3300050227 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 41.84145 -88.2298 1017926005 1620941 389 13 616 17 Restricted 14.74 Metagenome 3300035636 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_1_9_6 mgh University of Alberta 3300035636 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 68512633 88809 30 0 47 0 0.0 Metagenome 3300056893 *Microbiome Permanent Draft Co-cultures of unialgal cyanobacteria with co-existing heterotrophic bacteria from Dresden University of Technology, Germany Co-culture of unialgal cyanobacterium with co-existing heterotrophic bacterium from Dresden University of Technology, Germany - Nostoc_65.1/Streptobacillus DOE Joint Genome Institute (JGI) 3300056893 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes paul.dagostino@tu-dresden.de Paul M. D'Agostino No Host-associated Microbial Unclassified Bacteria Unclassified Lab culture 51.028586 13.73135 8041302 8762 2 0 2 0 Restricted 0.0 Metagenome 3300035169 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 25_4.5_M_1 DOE Joint Genome Institute (JGI) 3300035169 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1866 -2.2146 1810384058 4007448 930 74 1597 128 SRX8234980 Unrestricted 8.23 Metagenome 7000000312 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763961826 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000312 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 81777010 144053 0 0 0 0 0.0 Metagenome 3300005642 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Hot Lake Consortium UCC-RE (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300005642 Metagenome Analysis metalrec v. metalrec version 1.0.2 Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 427721363 765179 289 2 480 6 SRX2575224, SRX2575222, SRX2575223, SRX2575220, SRX2575221 Unrestricted 0.0 Metagenome 3300004081 *Microbiome Permanent Draft Soil microbial communities from Mediterranean grasslands, California Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300004081 Metagenome Analysis MEGAHIT v. 0.1.3-bugfix2 Yes Yes elbrodie@lbl.gov, ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 38.99297339 -123.0674491 4638379991 13243705 2179 176 4250 492 SRX1978715, SRX1978704, SRX1978714, SRX1978706, SRX1978705, SRX1978716, SRX1978707, SRX1978709, SRX2041365, SRX2041364, SRX1978711, SRX1978710, SRX1978713 Unrestricted 0.0 Metagenome 3300008062 *Microbiome Permanent Draft Marine sediment microbial communities from shallow-sea hydrothermal vent, Milos, Greece Marine sediment microbial communities from shallow-sea hydrothermal vent, Milos, Greece - SG7 National Aeronautics and Space Administration (NASA) 3300008062 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes momper@usc.edu Lily Momper No Environmental Aquatic Hydrothermal vents Marine Sediment Marine sediment 36.674869 24.520916 4-7 121466297 335248 89 3 139 6 0.0 Metagenome 3300061582 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_SEK2_3_to_RHK2 DOE Joint Genome Institute (JGI) 3300061582 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.153 -124.211 596935829 798473 162 70 303 87 Unrestricted 0.0 Metagenome 3300003637 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 m-RNA DAY 15 University of Sao Paulo, Virginia Bioinformatics Institute 3300003637 Metagenome Analysis SoapDeNovo released per JGI data release policy No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 24376640 51369 12 38 29 88 0.0 Metagenome 3300039585 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Taiga, AK, USA - HEAL_045-O-20170725-COMP-DNA1 Battelle Memorial Institute 3300039585 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.87569 -149.21334 93454518 221182 81 0 140 1 0.0 Metagenome 3300049704 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G2_A_2_control DOE Joint Genome Institute (JGI) 3300049704 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 383508451 847770 490 37 959 59 Unrestricted 11.92 Metagenome 3300071121 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from KU Field Station, Kansas, USA - UKFS_009-M-20180814-COMP-DNA1 3300071121 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 36915507 107350 67 8 126 15 0.0 Metagenome 3300002060 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - A-R1 J. Craig Venter Institute (JCVI) 3300002060 Metagenome Analysis Released per Alexandra J. Roth Schulze (April 1, 2016) No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 199348342 805100 54 24 163 31 0.0 Metagenome 3300035091 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 DOE Joint Genome Institute (JGI) 3300035091 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 39.6589 -79.9058 735924686 1992402 816 56 1421 116 SRX8289555 Unrestricted 6.82 Metagenome 3300011702 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100733 University of Pennsylvania 3300011702 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 21788513 48914 37 13 80 20 SRX756117 0.0 Metagenome 3300005295 *Microbiome Draft Switchgrass rhizosphere microbial communities from Michigan, USA Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) DOE Joint Genome Institute (JGI) 3300005295 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.794771 -84.393804 2653696186 6996297 2359 26 4339 68 Unrestricted 0.0 Metagenome 3300036376 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Aetokthonos hydrillicola B3-Florida and co-occurring heterotrophs from underwater plant surface from South Carolina, United States - 20190130_2 DOE Joint Genome Institute (JGI) 3300036376 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Aquatic Lake Freshwater Biofilm Underwater plant surface 33.7434 -82.2188 151525671 180180 45 0 64 0 SRX8846727 Unrestricted 109.42 Metagenome 3300012069 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Florida, USA - TSFL049 MetaG DOE Joint Genome Institute (JGI) 3300012069 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 27.6228 -81.8094 139535844 236272 23 68 43 128 SRX3539524 Unrestricted 0.0 Metagenome 3300050036 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-1 re-annotation DOE Joint Genome Institute (JGI) 3300050036 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Host-associated Plants Endosphere Roots Unclassified Populus endosphere 35.8443 -83.9607 4813355 16422 15 6 26 5 SRX2748471 0.0 Metagenome 3300005400 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261 DOE Joint Genome Institute (JGI) 3300005400 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 809770026 1983234 885 10 1530 18 SRX2782448 Unrestricted 0.0 Metagenome 3300070939 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_049-M-20180926-COMP-DNA1 3300070939 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 18397504 59348 95 19 224 24 0.0 Metagenome 3300048021 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_190717.NP1 DOE Joint Genome Institute (JGI) 3300048021 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 928706336 2062774 523 105 779 177 Unrestricted 14.36 Metagenome 3300027270 *Microbiome Permanent Draft Comparative metagneomics of mesophilic and thermophilic cellulose-adapted consortia Cellulose adapted compost microbial communities from Newby Island Compost Facility, Milpitas, CA, USA - Passage2 60A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027270 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Solid waste Composting Bio- and green waste (BGW) Unclassified Feedstock adapted compost 37.840898 -122.289614 43924941 60471 45 0 62 0 SRX3782578 Unrestricted 0.0 Metagenome 7000000279 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 763820215 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000279 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 1370602 1418 0 0 0 0 0.0 Metagenome 3300012087 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Florida, USA - TSFL043 MetaG DOE Joint Genome Institute (JGI) 3300012087 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 28.7083 -81.4874 287798639 485018 73 129 125 218 SRX3539481 Unrestricted 0.0 Metagenome 3300014492 *Microbiome Permanent Draft Permafrost microbial communities from Stordalen Mire, Sweden Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG DOE Joint Genome Institute (JGI) 3300014492 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rich.270@osu.edu Virginia Rich Yes 30013118 Environmental Terrestrial Wetlands Soil Permafrost Bog 68.35 19.05 1340394817 2329998 626 35 1009 85 SRX3580372 Unrestricted 10.34 Metagenome 3300042650 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A40 University of California, Davis 3300042650 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 173968957 488838 227 5 449 9 0.0 Metagenome 3300036595 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_C1 DOE Joint Genome Institute (JGI) 3300036595 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 224977948 674055 409 41 740 80 SRX8397160 Unrestricted 5.0 Metagenome 3300000600 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 13JUN2008 epilimnion DOE Joint Genome Institute (JGI) 3300000600 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300023479 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_150B University of California, Irvine 3300023479 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 73746076 70217 8 0 13 0 0.0 Metagenome 3300025128 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025128 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -13.003 -80.809 507156139 1160209 40 0 41 1 SRX2752464, SRX2752463 Unrestricted 0.0 Metagenome 3300003186 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment Column 1K1-0 454 Life Sciences 3300003186 Metagenome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Activated sludge Freshwater sediment 21.342509 40.478759 6-8 0 0 0 0 0 0 0.0 Metagenome 3300001456 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX- M7 DOE Joint Genome Institute (JGI) 3300001456 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 5360643 18098 202 15 346 17 SRX2553568, SRX2553567, SRX2553569, SRX2553566 0.0 Metagenome 3300070705 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_024-M-20190715-COMP-DNA1 3300070705 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 1177095 3944 9 8 17 13 0.0 Metagenome 3300037474 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Soil microbial communities from Duke University greenhouse, North Carolina, United States - NS_N_2 noSuillus Nitrogen DOE Joint Genome Institute (JGI) 3300037474 Metagenome Analysis metaspades v. 3.13.0 Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Greenhouse Soil Unclassified soil 36.0 -78.0 1100581234 1983611 609 68 1113 90 SRX9172748 Unrestricted 14.75 Metagenome 3300040532 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_003-M-3-36-20160809-GEN-DNA1 Battelle Memorial Institute 3300040532 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 2991443 9030 27 5 33 6 0.0 Metagenome 3300018915 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - late stage, 0 min after wetting v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018915 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 401447553 757431 303 6 485 9 0.0 Metagenome 3300027345 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F09 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027345 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 43588627 52874 53 0 47 0 SRX3195098 Unrestricted 0.0 Metagenome 3300016722 *Microbiome Draft Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA Microbial communities from bioreactor (seeded with anoxic lake sediment) at LBNL, California, USA - Biofuel metagenome 2 DOE Joint Genome Institute (JGI) 3300016722 Metagenome Analysis Yes Yes hrbeller@lbl.gov Harry Beller Yes 29556105 Engineered Bioreactor Unclassified Anaerobic Unclassified Bioreactor 37.8754404 -122.2477251 206159530 331358 167 1 238 5 Unrestricted 0.0 Metagenome 3300037293 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Lake McNeill #21 DOE Joint Genome Institute (JGI) 3300037293 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5273 78.3705 614914300 1113088 298 85 365 120 SRX9173355 Unrestricted 23.71 Metagenome 3300060915 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Konza Prairie Bio Station, Kansas, USA - KONZ_024-M-20210719-comp-1 DOE Joint Genome Institute (JGI) 3300060915 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Grasslands Soil Unclassified Terrestrial soil 39.110903 -96.552209 1876405998 3123336 524 9 875 14 Unrestricted 14.16 Metagenome 3300018048 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300018048 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1470254102 3254155 1092 69 1921 111 SRX4081050 Unrestricted 20.62 Metagenome 3300039357 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 18_M Beijing Genomics Institute (BGI) 3300039357 Metagenome Analysis Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 144910080 201804 111 0 195 0 ERX490988 0.0 Metagenome 3300004197 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 28_LOW6 DOE Joint Genome Institute (JGI) 3300004197 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 116005135 302732 68 0 156 1 SRX2720211 Unrestricted 0.0 Metagenome 3300024459 *Microbiome Permanent Draft Vaginal microbial communities from lab mice Vaginal microbial communities from healthy lab mice, Madrid, Spain - A2, day 20 Polytechnic University of Valencia 3300024459 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Vagina Reproductive system Unclassified mice vagina 40.4191094 -3.6725753 951778 1452 0 1 0 3 0.0 Metagenome 3300001794 *Microbiome Permanent Draft Termite hindgut microbial communities from the Max Planck Institute, Bremen, Germany, analyzing fibers in the hindgut lumen Termite hindgut microbial communities from the Max Planck Institute, Bremen, Germany, analyzing fibers in the hindgut lumen - Fiber-Associated Metagenome GATC-Biotech AG, Konstanz, Germany 3300001794 Metagenome Analysis released per JGI data release policy No Yes karen.rossmassler@gmail.com Karen Rossmassler No Host-associated Arthropoda: Insects Hindgut Digestive system Unclassified Termite hindgut 53.109695 8.847543 0 0 0 0 0 0 0.0 Metagenome 3300005836 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB Oregon Health and Science University (OHSU) 3300005836 Metagenome Analysis unassembled released per JGI data release policy No Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Unclassified Sediment Unclassified sediment (intertidal) 46.15968 -123.80651 1845290452 3204598 1073 63 1808 99 0.0 Metagenome 3300031341 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-20 DOE Joint Genome Institute (JGI) 3300031341 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.759 -70.891 386647506 860432 384 0 596 3 SRX5358020 Unrestricted 8.44 Metagenome 3300025820 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment bacterial and archeal communities from California, USA to study Microbial Dark Matter (Phase II) - Blank Spring sediment metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025820 Metagenome Analysis spades v. 3.11.1 Yes Yes jkjarett@lbl.gov; rstepanauskas@bigelow.org Jessica Jarett; Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 39.0314 -122.4323 7.48 431386282 787819 428 2 655 1 SRX2526466 Unrestricted 0.0 Metagenome 3300046347 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_129 DOE Joint Genome Institute (JGI) 3300046347 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9802 -106.9905 29440432 91563 272 45 574 55 Restricted 0.0 Metagenome 3300012205 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG DOE Joint Genome Institute (JGI) 3300012205 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 2704279644 5523459 1312 90 2642 158 SRX3372676 Unrestricted 0.0 Metagenome 3300042011 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z062817_5204 DOE Joint Genome Institute (JGI) 3300042011 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.201 -97.9447 315623748 889797 562 51 1065 86 SRX14829248 Unrestricted 7.12 Metagenome 3300043672 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 383-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043672 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9903 -107.0595 392942974 1088294 378 25 710 51 Unrestricted 6.28 Metagenome 3300002499 *Microbiome Permanent Draft Lamellibrachia satsuma associated microbial communities from Kagoshima Bay, Japan Lamellibrachia satsuma endosymbiont metagenome-1371 Theragen Bio Institute 3300002499 Metagenome Analysis de novo assembly Please release these metagenomes for public. Thank you for your help and service. Yes Yes patraajitkumar@gmail.com Ajit Kumar Patra No Host-associated Annelida Trophosome Intracellular endosymbionts Unclassified Lamellibrachia satsuma endosymbiont 31.663611 130.774722 6065234 5676 1 3 1 2 0.0 Metagenome 3300000098 *Microbiome Permanent Draft Marine microbial communities from a deep-sea hydrothermal vent at Loihi Seamount, Hawaii Marine microbial communities from hydrothermal vents at Loihi seamountain, Hawaii Pennsylvania State University 3300000098 Metagenome Analysis released per JGI data release policy No Yes esthersi@usc.edu Esther Singer Yes 23518919 Environmental Aquatic Hydrothermal vents Marine Unclassified Marine 18.92 -155.27 8 19923105 50316 15 0 11 0 0.0 Metagenome 3300026856 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S1_40_50 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026856 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37229149 -119.2718121 42821247 124736 177 21 318 29 SRX2522701 Unrestricted 0.0 Metagenome 3300001070 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN407 DOE Joint Genome Institute (JGI) 3300001070 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Soil 44.20517707 -122.1284473 293912 894 19 1 38 1 SRX1986909 Unrestricted 0.0 Metagenome 3300010882 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Labiotermes labralis P4 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P4 DOE Joint Genome Institute (JGI) 3300010882 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 5.0626 -53.0462 2383726555 3537707 1393 69 2364 100 SRX2525402 Unrestricted 0.0 Metagenome 3300037787 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - ARW9_20151215 DOE Joint Genome Institute (JGI) 3300037787 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 159281449 258997 104 8 125 8 SRX9140192 Unrestricted 56.77 Metagenome 3300069327 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_002-O-20160718-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069327 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 74762335 213437 138 45 280 49 0.0 Metagenome 3300012490 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.4.old.040610 DOE Joint Genome Institute (JGI) 3300012490 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 98195186 264338 222 18 428 26 SRX3527363 Unrestricted 0.0 Metagenome 3300012925 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300012925 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 2838921756 6232307 1580 190 3027 330 SRX3049021, SRX3049022, SRX3049023, SRX3049024, SRX3049025, SRX3049026, SRX3049027, SRX3049028, SRX3049029 Unrestricted 0.0 Metagenome 3300044652 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - CSA1S DOE Joint Genome Institute (JGI) 3300044652 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 1375523495 2420480 394 20 719 23 Unrestricted 13.71 Metagenome 3300006318 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0200m University of Hawaii 3300006318 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 214584060 558066 507 35 750 60 0.0 Metagenome 3300043126 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10WT15 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043126 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 41062142 123986 129 17 219 35 SRX8379337 Unrestricted 16.94 Metagenome 3300029877 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37879 Beijing Genomics Institute (BGI) 3300029877 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 113584437 139558 79 0 138 0 0.0 Metagenome 3300025539 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Bullhead_CordA_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025539 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.003361 -122.468277 143613506 308456 175 0 279 0 SRX7142154 Unrestricted 0.0 Metagenome 3300022706 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1OPP1 JM100 AGRF 3300022706 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 43911740 73972 35 0 53 0 0.0 Metagenome 3300027329 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepB_8h DOE Joint Genome Institute (JGI) 3300027329 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 234124654 499064 145 14 252 22 SRX5245227 Unrestricted 15.53 Metagenome 7000000320 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 809635352 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000320 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 168294566 276288 0 0 0 0 0.0 Metagenome 3300049678 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_B_3_drought DOE Joint Genome Institute (JGI) 3300049678 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 93760254 210239 261 20 507 44 Unrestricted 12.26 Metagenome 3300049333 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC18 DOE Joint Genome Institute (JGI) 3300049333 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 81440433 215275 199 5 409 9 Unrestricted 28.94 Metagenome 3300004062 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2 DOE Joint Genome Institute (JGI) 3300004062 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.000637 -121.624207 550286534 1730962 657 3 1484 6 SRX7143407 Unrestricted 0.0 Metagenome 3300008081 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 765074482 replicate 1 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008081 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 184672172 239703 135 0 221 0 0.0 Metagenome 3300006559 *Microbiome Finished Investigation of Black Sea water bacterial metagenome Marine microbial communities from the Black Sea in Odessa region - Od_3 Hellenic Centre for Marine Research (HCMR) 3300006559 Metagenome Analysis idba_hybrid Released per Oleksandra Bobrova (Nov 20, 2015) No Yes o.bobrova@onu.edu.ua Aleksandra Bobrova No Environmental Aquatic Coastal Marine Unclassified Marine 46.440968 30.772294 8 15417702 57359 10 11 33 29 0.0 Metagenome 3300048873 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - Jacob106 DOE Joint Genome Institute (JGI) 3300048873 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Sand Soil Desert sand -78.029 164.2912 68409072 159011 61 0 133 1 Unrestricted 0.0 Metagenome 3300010992 *Microbiome Permanent Draft CWC Coastal Marshes ELM11109_Bassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method B (2X150bp) Molecular Research LP (MR DNA) 3300010992 Metagenome Analysis SPAdes 3.9.0 released by JGI data releasing policy No Yes aengel1@utk.edu Annette Engel No Environmental Aquatic Wetlands Freshwater Sediment sediment 29.4542 -89.76993 43187297 90248 43 15 82 16 0.0 Metagenome 3300010374 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day17 DOE Joint Genome Institute (JGI) 3300010374 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 39.849 -81.036 193322489 407218 253 68 405 118 SRX2524544, SRX2524545 Unrestricted 0.0 Metagenome 3300042563 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24May2002-rr0118 DOE Joint Genome Institute (JGI) 3300042563 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1009293947 1521054 289 60 371 70 Unrestricted 27.98 Metagenome 3300040284 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_002-M-20170612-COMP-DNA1 Battelle Memorial Institute 3300040284 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 6613015 18961 50 11 78 25 0.0 Metagenome 3300005313 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila neotestacea male 2 gut Cornell University 3300005313 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy No Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila neotestacea male adult gut 43.025606 -77.572811 114065880 239367 33 5 57 4 0.0 Metagenome 3300025485 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_CSW11AC (SPAdes) DOE Joint Genome Institute (JGI) 3300025485 Metagenome Analysis spades v. 3.11.1 Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 8058487 11067 19 0 12 0 SRX3321593 Unrestricted 0.0 Metagenome 7000000643 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160178356 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000643 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 15075945 30565 0 0 0 0 0.0 Metagenome 3300034007 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 32SMC DOE Joint Genome Institute (JGI) 3300034007 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological biocrust 34.7856 -115.66 323243794 727796 450 17 808 31 SRX7620445 Unrestricted 9.97 Metagenome 3300045805 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - G3-R2-B DOE Joint Genome Institute (JGI) 3300045805 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3549 19.0438 301274737 730215 337 27 560 52 Unrestricted 6.22 Metagenome 3300026977 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and P1 (4) (SPAdes) DOE Joint Genome Institute (JGI) 3300026977 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 75133896 115730 42 0 61 0 SRX3311645 Unrestricted 0.0 Metagenome 7000000196 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 764083206 replicate 1 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000196 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 588338 1361 0 0 0 0 SRX024913 0.0 Metagenome 3300014968 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG DOE Joint Genome Institute (JGI) 3300014968 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil switchgrass rhizosphere 42.3948 -85.3738 3867133081 8188496 2524 389 4149 661 SRX4808762 Unrestricted 5.8 Metagenome 3300020685 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 11AUG2009 hypolimnion DOE Joint Genome Institute (JGI) 3300020685 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 49153280 108508 57 5 94 8 Unrestricted 0.0 Metagenome 3300005101 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Hydrocarbon microbial Community from Halfdan Field, North Sea, Denmark - MHBA7 Shell Corporation 3300005101 Metagenome Analysis megahit Released on PI's request No Yes ebalsop@lbl.gov Eric Alsop No Environmental Aquatic Deep subsurface Marine Hydrocarbon water 55.49 7.42 579049543 1676177 2264 15 4331 68 0.0 Metagenome 3300016710 *Microbiome Permanent Draft Viral community in wastewater in Singapore Wastewater viral communities from membrane bioreactor in WWT plant in Singapore - MBR_Nov16 Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016710 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Engineered WWTP Unclassified Wastewater Unclassified wastewater 1.28 103.74 10967482 18375 1 0 14 2 0.0 Metagenome 3300037315 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site2_nosalt_MVII_1 DOE Joint Genome Institute (JGI) 3300037315 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Tidal flats microbial mat 20.7452 58.6625 494641024 1010161 350 2 572 4 SRX9169872 Unrestricted 11.02 Metagenome 3300018492 *Microbiome Permanent Draft Bovine feces microbial communities from beef and dairy calves in Davis, CA, USA Bovine feces microbial communities from dairy calf in Davis, CA, USA - DMJL001L re-assembly QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018492 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes jxnliu@ucdavis.edu Jinxin Liu No Host-associated Mammals Large intestine Digestive system Fecal feces 38.5449 -121.7405 267816331 489134 319 3 570 6 0.0 Metagenome 3300043390 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 293-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043390 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9784 -107.0357 336123832 925748 379 38 665 58 Unrestricted 6.83 Metagenome 3300029956 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_2 DOE Joint Genome Institute (JGI) 3300029956 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 765626416 1703936 381 25 555 60 SRX5355605 Unrestricted 10.05 Metagenome 3300017813 *Microbiome Permanent Draft Archevir - Metagenome and diversity of hyperhalophilic archaeoviruses Saline water viral communities from Saloum River inverse estuary, Senegal - P2 GATC-Biotech AG, Konstanz, Germany 3300017813 Metagenome Analysis Idba_ud No Yes sroux@lbl.gov Simon Roux Yes 26472517 Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified saline water 14.0536 -16.2885 15517220 33461 0 0 0 0 0.0 Metagenome 3300028459 *Microbiome Permanent Draft Water-rock integrations support subglacial chemolithoautotrophy Glacial sediment microbial communities from Kotlujokull glacier, Mulakvisl, Iceland - Mul17 University of Minnesota 3300028459 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy No Yes trinityh@umn.edu Trinity Hamilton No Environmental Aquatic Ice Freshwater Glacier Glacier outflow sediment 63.560833 -18.833333 23661697 28017 9 1 8 2 0.0 Metagenome 3300014048 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00569 Weill Cornell Medical College 3300014048 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.7 -74.0 41167244 57109 21 0 30 0 SRX822536 0.0 Metagenome 3300033511 *Microbiome Permanent Draft Picher, OK, Soil Microbes Composed assembly of Methylobacterium sp. strains from Northwest Missouri State University, MO, USA - EM010203080917 The Sequencing Center (Fort Collins) 3300033511 Metagenome Analysis SPAdes v. 3.10.1 released by JGI data releasing policy No Yes agcamp@nwmissouri.edu Alisha Campbell No Engineered Modeled Unclassified Simulated communities (sequence read mixture) Unclassified defined medium 40.3519854 -94.8825243 6017473 5962 3 0 1 0 0.0 Metagenome 3300028824 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197 DOE Joint Genome Institute (JGI) 3300028824 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040586 -106.94868265 1496968062 3831989 710 24 1278 32 SRX5355406 Unrestricted 10.75 Metagenome 3300014915 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01178 Weill Cornell Medical College 3300014915 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.69 -73.85 23226751 50723 24 0 23 0 SRX823133 0.0 Metagenome 3300037368 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_C1 DOE Joint Genome Institute (JGI) 3300037368 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 363278641 860786 210 31 377 40 SRX9146689 Unrestricted 6.45 Metagenome 3300027728 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m DOE Joint Genome Institute (JGI) 3300027728 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater 39.9879 -1.8737 852440354 1359597 438 62 604 101 SRX5249019 Unrestricted 28.05 Metagenome 3300032301 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 17-027 Genome Quebec 3300032301 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.213133 -65.852159 672907126 1327569 305 92 597 156 0.0 Metagenome 3300043161 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_9 (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043161 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 737583258 1186378 129 3 236 4 SRX8240585 Unrestricted 36.19 Metagenome 3300009812 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N2_50_60 DOE Joint Genome Institute (JGI) 3300009812 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380273 -119.2723038 152249048 349432 199 5 404 9 SRX2523173 Unrestricted 0.0 Metagenome 3300031804 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - CB11b_AW_Bot5 DOE Joint Genome Institute (JGI) 3300031804 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 79.9957 -149.9767 1517438995 3168453 1059 90 1606 172 SRX5817147 Unrestricted 13.74 Metagenome 3300011245 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, 0.2 Toyama Prefectural University 3300011245 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Unclassified marine 37.36555 137.72861 8.1 59443788 121071 21 3 52 3 0.0 Metagenome 3300059775 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059775 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2342 -123.9167 137194523 327072 157 10 229 25 SRX2753605 Unrestricted 0.0 Metagenome 3300049425 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River, Colorado, USA - Brdu-_Short DOE Joint Genome Institute (JGI) 3300049425 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 153809406 390217 330 17 547 19 Restricted 14.86 Metagenome 3300049990 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Sediment-water slurry microbial communities from hot spring in Yellowstone National Park, WY, USA - Buffalo_pool_control_inc_3 DOE Joint Genome Institute (JGI) 3300049990 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Sediment-water slurry 44.5324 -110.7974 208191440 329266 95 2 153 0 Restricted 390.86 Metagenome 3300020512 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 19NOV2010 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020512 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 97976217 201086 85 29 144 48 SRX1989278 Unrestricted 0.0 Metagenome 3300038977 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - NAD2 Michigan State University 3300038977 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 49.478333 -147.405 21788741 53332 4 2 13 1 0.0 Metagenome 3300047159 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Activated sludge microbial communities from digester in WWTP, Madison, Wisconsin, United States - Acid_Sludge_Seed_B DOE Joint Genome Institute (JGI) 3300047159 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35894622 Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.0738 -89.414 136813063 150798 101 0 102 0 SRX12686311, SRX15594533, SRX15594532 Unrestricted 0.0 Metagenome 3300010398 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama - MetaG Plot_35 DOE Joint Genome Institute (JGI) 3300010398 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes cpan@ou.edu Chongle Pan No Environmental Terrestrial Tropical forest Soil Bulk soil Tropical forest soil 9.1086 -79.8436 5228931836 11466573 2120 59 3863 102 SRX2526042 Unrestricted 0.0 Metagenome 3300003818 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Jul07 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003818 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 7613727 22557 27 19 32 28 SRX2565362 Unrestricted 0.0 Metagenome 3300044785 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_12 DOE Joint Genome Institute (JGI) 3300044785 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 715952113 1716870 551 13 1000 24 Unrestricted 8.02 Metagenome 3300070859 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Treehaven, Wisconsin, USA - TREE_049-M-20170710-COMP-DNA1 3300070859 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 56738184 165007 115 5 194 13 0.0 Metagenome 3300037962 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001518 CEA Genoscope 3300037962 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 23.4183 37.245 104824876 186075 38 0 71 0 0.0 Metagenome 3300070424 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Mountain Lake Biological Station, Virginia, USA - MLBS_005-O-20180611-COMP-DNA1 3300070424 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 97356817 281657 129 11 245 17 0.0 Metagenome 3300053215 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Biomass microbial communities from acid-phase anaerobic digester in WWTP, Madison, WI, USA - 20201123_SampleA DOE Joint Genome Institute (JGI) 3300053215 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Sludge Anaerobic digester Unclassified Biomass 43.03331 -89.35633 69176262 67788 69 0 68 0 Unrestricted 0.0 Metagenome 3300012232 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2 DOE Joint Genome Institute (JGI) 3300012232 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9779 -107.0031 453606256 995037 430 29 854 54 SRX3539320 Unrestricted 0.0 Metagenome 3300070242 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_072-O-20180628-COMP-DNA1 3300070242 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 262374181 693271 244 71 462 104 0.0 Metagenome 3300036824 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Eucalyptus forests in New South Wales, Australia - Eu_7 DOE Joint Genome Institute (JGI) 3300036824 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Tropical forest Soil Bulk soil soil -34.5 150.0 1063276737 1769518 278 26 554 41 SRX8386874 Unrestricted 16.32 Metagenome 3300007036 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T18 (1) (Live), Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300007036 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, nicolas.tsesmetzis@shell.com; ianhead@ncl.ac.uk Nicolas Tsesmetzis, Nicolas Tsesmetzis; Ian Head No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 57230843 114477 58 0 98 0 0.0 Metagenome 3300060381 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210528_01_01 DOE Joint Genome Institute (JGI) 3300060381 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 521355024 758698 161 147 216 199 Unrestricted 22.1 Metagenome 3300032113 *Microbiome Permanent Draft Microbial communities from the deep biosphere Marine sediment microbial communities from the Haakon Mosby mud volcano in the Barents Sea, Arctic Ocean - MSM16_2_809_1_MUC re-assembly The Marine Biological Laboratory 3300032113 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Mud volcano Marine Sediment Sediment 72.003 14.732 1346478983 4062422 737 33 1444 54 SRX993397, SRX550006, SRX549990 0.0 Metagenome 3300010153 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG DOE Joint Genome Institute (JGI) 3300010153 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -16.21 -76.63 688218924 1559442 94 0 128 0 SRX3197405, SRX3197406 Unrestricted 0.0 Metagenome 3300037042 *Microbiome Permanent Draft Sediment microbial communities from various lakes in Switzerland Sediment microbial communities from Lake Zurich, Zurich, Switzerland - LZ_15 DOE Joint Genome Institute (JGI) 3300037042 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mark.lever@usys.ethz.ch Mark Alexander Lever No Environmental Aquatic Lake Freshwater Sediment sediment 47.2832 8.5937 879968276 1509749 358 10 553 15 SRX8399467 Unrestricted 16.52 Metagenome 7000000029 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2 of subject 764487809 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000029 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 104710410 173859 0 0 0 0 0.0 Metagenome 3300042327 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME27Jun2013-rr0747 DOE Joint Genome Institute (JGI) 3300042327 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 593365932 966889 224 35 292 51 Unrestricted 19.14 Metagenome 3300052653 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Photosynthetic mat viral communities from Octopus Spring, YNP, Wyoming, United States - OS20050624 m2 DOE Joint Genome Institute (JGI) 3300052653 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.53408 -110.7979 6883689 12401 11 0 12 2 Unrestricted 0.0 Metagenome 3300003865 *Microbiome Permanent Draft Human infant gut microbial communities from Netherlands Human infant gut microbial communities from Netherlands Reference sample : Babyflora FOS t=0 0-B2 165 ng/ul Top Institute of Food and Nutrition (TIFN), The Netherlands Organization for Applied Scientific Research (TNO) 3300003865 Metagenome Analysis Bowtie2 released per JGI data release policy No Yes carlijn.vandewater@tno.nl Carlijn van de Water No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 6070733 16468 63 9 96 11 0.0 Metagenome 3300014740 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01507 Weill Cornell Medical College 3300014740 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.99 17263976 28112 10 0 14 0 SRX823383 0.0 Metagenome 3300070695 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_048-M-20191002-COMP-DNA1 3300070695 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 11329674 35140 44 1 93 2 0.0 Metagenome 3300007907 *Microbiome Permanent Draft Anaerobic oil degrading microbial communities from River Tyne estuarine sediment Microbial communities from sediment of the River Tyne Estuary, UK - Pasteurized_176d_3 University of Liverpool 3300007907 Metagenome Analysis IDBA-DB released per JGI data release policy No Yes ana.suarez-suarez@ncl.ac.uk, ian.head@ncl.ac.uk; ana.suarez-suarez@ncl.ac.uk Ana Su?rez-Su?rez, Ian Head; Ana Suarez-Suarez No Environmental Aquatic Unclassified Sediment Unclassified sediment 54.9632021 -1.6348029 41611655 78398 39 1 92 0 0.0 Metagenome 3300029400 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 041_11_1_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029400 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 128808958 173890 157 0 200 0 0.0 Metagenome 3300013427 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A15_35cm_18M University of Tennessee 3300013427 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 249710099 557025 120 3 201 5 SRX710623 0.0 Metagenome 3300000074 *Microbiome Permanent Draft Freshwater microbial plankton communities from Lake Konstanz, Germany Freshwater microbial plankton communities from Lake Konstanz, Germany, sample GS697_0.8 um size class J. Craig Venter Institute (JCVI) 3300000074 Metagenome Analysis released per JGI data release policy No Yes david.schleheck@uni-konstanz.de David Schleheck No Environmental Aquatic Lentic Freshwater Epilimnion Freshwater 47.451381 9.073833 0 0 0 0 0 0 0.0 Metagenome 3300039343 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 238_4M Beijing Genomics Institute (BGI) 3300039343 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 21508456 25272 15 0 19 0 ERX491012 0.0 Metagenome 3300038856 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Realigned salt marsh sediment microbial communities from Abbotts Hall, United Kingdom - W AHRM 3A University of York 3300038856 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Realigned salt marsh sediment 51.787833 0.855517 62455084 158554 86 2 144 0 0.0 Metagenome 3300043933 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_CSTR_054 DOE Joint Genome Institute (JGI) 3300043933 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 131666976 199472 154 1 203 1 SRX12654502 Unrestricted 108.42 Metagenome 3300034123 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_01D_15 DOE Joint Genome Institute (JGI) 3300034123 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9141 -147.8348 580518371 1492940 717 10 1288 21 SRX7633782 Unrestricted 6.37 Metagenome 3300046684 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere DOE Joint Genome Institute (JGI) 3300046684 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5877 -123.1938 691684469 1176083 285 16 523 17 Unrestricted 16.03 Metagenome 3300019845 *Microbiome Permanent Draft Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil - Pedrinho_C4 Center for Advanced Technologies in Genomics, Sao Paulo University 3300019845 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 55927133 109957 101 2 154 2 0.0 Metagenome 3300003122 *Microbiome Permanent Draft Premature infant stool microbial communities from Comer Children's Hospital, University of Chicago, Illinois, USA Premature infant stool microbial communities from Comer Children's Hospital, University of Chicago, Illinois, USA University of California, Berkeley 3300003122 Metagenome Analysis Velvet v. 1.1 Made public because these are downloaded from Genbank No Yes jbanfield@berkeley.edu Jill Banfield No Host-associated Mammals: Human Large intestine Digestive system Fecal Premature infant stool 41.8819 -87.6278 8888804 22065 24 0 48 0 0.0 Metagenome 3300000790 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine sediment microbial community from La Parguera, Puerto Rico - PR Tt Sediment 3 DOE Joint Genome Institute (JGI) 3300000790 Metagenome Analysis Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Intertidal zone Marine Sediment Enviromental 17.96725 -67.0188733 1432834 4984 5 0 12 4 SRX3303108 Unrestricted 0.0 Metagenome 3300029295 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS66_18 University of Hohenheim 3300029295 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 111562596 148295 111 0 162 0 0.0 Metagenome 3300044946 *Microbiome Permanent Draft Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA - SWaN 13 years plot 18 DOE Joint Genome Institute (JGI) 3300044946 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes luizdomeignoz@gmail.com Luiz Domeignoz Horta No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 42.303 -72.1228 1971186981 3166183 445 62 710 97 SRX15792996 Unrestricted 16.51 Metagenome 3300039204 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - COS2 Michigan State University 3300039204 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 37.138333 151.09 69867023 200192 5 0 5 1 0.0 Metagenome 3300001778 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM18, ROCA_DNA027_0.2um_3g 3300001778 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River plume Marine Plankton Marine plankton 7.2875 -53.0005 108653160 236450 42 10 99 12 0.0 Metagenome 2124908042 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from Bonanza Creek, Alaska, USA - Active_all DOE Joint Genome Institute (JGI) 2124908042 Metagenome Analysis Velvet & CLC released by JGI data releasing policy No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 56221608 87342 38 2 77 0 0.0 Metagenome 3300027583 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027583 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 317442052 781838 249 56 403 82 SRX3312029 Unrestricted 0.0 Metagenome 3300069563 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_044-M-20160808-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069563 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 32599355 94360 46 3 96 5 0.0 Metagenome 3300054562 *Microbiome Permanent Draft Soil microbial communities from pasture in Hopland Research and Extension Center, CA, USA Soil viral communities from pasture in Hopland Research and Extension Center, CA, USA - T2-H2O+P-A library kit 1SPlus DOE Joint Genome Institute (JGI) 3300054562 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes trubl1@llnl.gov Gareth Trubl No Environmental Terrestrial Pasture Soil Unclassified Soil 39.00177 -123.06967 127543770 326825 108 1 211 2 Unrestricted 97.38 Metagenome 3300026285 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026285 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 372813629 707498 204 24 371 41 SRX2563716 Unrestricted 0.0 Metagenome 3300003411 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD DOE Joint Genome Institute (JGI) 3300003411 Metagenome Analysis Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 464678342 1031013 265 28 491 32 SRX2565048 Unrestricted 0.0 Metagenome 3300042834 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182 NMDC pilot DOE Joint Genome Institute (JGI) 3300042834 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92029772 -106.94875926 842195528 2041677 472 10 938 12 SRX5354717 0.0 Metagenome 3300043099 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME04Sep2018-rr0789 DOE Joint Genome Institute (JGI) 3300043099 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 760745601 1221492 371 81 513 112 Unrestricted 14.44 Metagenome 3300045832 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_3_E DOE Joint Genome Institute (JGI) 3300045832 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 183006845 215196 113 1 134 1 Unrestricted 87.69 Metagenome 3300011692 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00602 Weill Cornell Medical College 3300011692 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.77 -73.95 22422250 32409 12 0 19 0 SRX822569 0.0 Metagenome 3300008725 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 763678604 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008725 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 211787256 284319 165 1 286 2 0.0 Metagenome 3300006912 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius loisae HERON ISLAND.1 DOE Joint Genome Institute (JGI) 3300006912 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 683189849 1462739 5 5 11 21 SRX2711689 Unrestricted 0.0 Metagenome 3300028522 *Microbiome Permanent Draft Antarctic Nanohaloarchaea Enriched hypersaline water microbial communities from Club Lake, Antarctica - Nha-CHl Garvan Institute of Medical Research 3300028522 Metagenome Analysis MiniASM v. 0.2-r168-dirty, MiniMAP v. 2.9, Racon v. 1.2.0 Released by Simon per user request. Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 31253704 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline water -68.5417 78.2467 29395155 50658 29 0 29 0 0.0 Metagenome 3300038540 *Microbiome Permanent Draft Freshwater viral communities from Besos river, Catalonia, Barcelona, Spain Freshwater viral communities from Besos river, Catalonia, Barcelona, Spain - BRW1 University of Barcelona 3300038540 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 41.42 2.15 16596975 37431 8 1 14 2 0.0 Metagenome 3300011516 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01111 Weill Cornell Medical College 3300011516 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.66 -73.9 14961796 26321 16 0 20 0 SRX823066 0.0 Metagenome 3300042446 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME02Jun2017-rr0042 DOE Joint Genome Institute (JGI) 3300042446 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 955647248 1426820 241 31 316 35 Unrestricted 25.6 Metagenome 3300043042 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10WP15 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043042 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 24391135 63686 52 1 79 3 SRX8379130 Unrestricted 25.61 Metagenome 3300011649 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01212 Weill Cornell Medical College 3300011649 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.86 -73.89 30436030 45555 12 0 27 0 SRX823167 0.0 Metagenome 3300043962 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TS30 DOE Joint Genome Institute (JGI) 3300043962 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.4139 89526914 118246 98 3 110 7 SRX12660021 Unrestricted 233.14 Metagenome 3300020031 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_31MAY2016_LD2 MG DOE Joint Genome Institute (JGI) 3300020031 Metagenome Analysis spades v. 3.10.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 22464610 43535 1 6 1 9 SRX3922900 Unrestricted 103.44 Metagenome 3300045226 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_5_C DOE Joint Genome Institute (JGI) 3300045226 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 156976109 197788 100 1 104 2 Unrestricted 158.04 Metagenome 3300070914 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Colorado, USA - CPER_003-M-20190624-COMP-DNA1 3300070914 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 8673129 26383 52 2 82 3 0.0 Metagenome 3300048606 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 004-ER18-SC-SDNA (version 2) DOE Joint Genome Institute (JGI) 3300048606 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9574 -106.9861 1791907054 3888287 828 38 1420 84 Unrestricted 0.0 Metagenome 3300000387 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial communities from University of Liverpool, UK - Illumina_50pg_assembled_park University of Liverpool 3300000387 Metagenome Analysis Meta-IDBA released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 14254984 31402 115 0 191 0 0.0 Metagenome 3300024510 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepA_8h DOE Joint Genome Institute (JGI) 3300024510 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 114368944 274384 125 3 209 6 SRX4547476 Unrestricted 16.96 Metagenome 3300065580 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 769 in Veteran, Alberta, Canada - S00JY_0322 Microbiome Insights 3300065580 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.01390508 -111.1006914 147000458 210982 51 4 89 5 0.0 Metagenome 3300046461 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere DOE Joint Genome Institute (JGI) 3300046461 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1212 -123.2713 693601031 1148359 274 79 454 102 Unrestricted 14.19 Metagenome 3300001640 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF010 DOE Joint Genome Institute (JGI) 3300001640 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 7199746 23086 34 0 61 1 SRX2014335 Unrestricted 0.0 Metagenome 3300031467 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Sorghum-adapted microbial communities enriched on wild type (WT) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - WT_Day14_2 DOE Joint Genome Institute (JGI) 3300031467 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 146071618 207038 155 0 170 0 SRX5661262 Unrestricted 207.89 Metagenome 3300069532 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_001-M-20131122-COMP-DNA1 re-annotation Argonne National Laboratory 3300069532 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 5060091 16050 42 3 59 5 ERX2134000 0.0 Metagenome 3300000555 *Microbiome Draft Wetland microbial communities from Twitchell Island in the Sacramento Delta Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk v4 (version 4) DOE Joint Genome Institute (JGI) 3300000555 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS No Yes stringe@lbl.gov Susannah Tringe Yes 25991679 Environmental Aquatic Wetlands Marine Sediment Wetland 38.107057 -121.647578 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300049048 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - J23_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049048 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 349334672 709162 486 33 872 42 Unrestricted 0.0 Metagenome 3300042505 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Oct2014-rr0523 DOE Joint Genome Institute (JGI) 3300042505 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 989301870 1535475 404 83 506 114 Unrestricted 19.54 Metagenome 3300041950 *Microbiome Permanent Draft Sea ice microbial communities from Coral Harbour, Canada Sea ice microbial communities from Coral Harbour, Canada - CH5C University of Bristol 3300041950 Metagenome Analysis MEGAHIT v. 1.23 released by JGI data releasing policy Yes Yes christopher.bellas@bristol.ac.uk Chris Bellas No Environmental Aquatic Sea ice Marine Unclassified Sea ice 63.994183 -83.338633 1.5 540406927 836854 439 61 564 82 0.0 Metagenome 3300000369 *Microbiome Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine microbial community from Union City, CA, USA - Pond 2C Liquid 3 DOE Joint Genome Institute (JGI) 3300000369 Metagenome Analysis released based on JGI ITS Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Enviromental 37.568817 -122.10315 17102308 18170 3 0 5 0 Unrestricted 0.0 Metagenome 3300005308 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila putrida male 1 gut Cornell University 3300005308 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy No Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila putrida male adult gut 43.025606 -77.572811 76472509 203266 70 23 126 21 0.0 Metagenome 3300033159 *Microbiome Permanent Draft Hot spring microbial communities from different geyser basins in Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Geyser Creek Basin, Yellowstone National Park, WY, United States - GCR.JH_S DOE Joint Genome Institute (JGI) 3300033159 Metagenome Analysis spades v. 3.13.0 Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Near-boiling (>90C) Thermal springs Sediment hot spring sediment 44.6903 -110.7293 66625391 126497 54 9 86 9 SRX7584268 Unrestricted 1075.61 Metagenome 3300049915 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_160914.NP2 DOE Joint Genome Institute (JGI) 3300049915 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 695315885 1524445 498 110 712 193 Restricted 10.9 Metagenome 3300037161 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 715 S3 30-34 DOE Joint Genome Institute (JGI) 3300037161 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0475 604361848 1059229 228 16 332 22 SRX8138803 Unrestricted 18.36 Metagenome 3300037847 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_039 - TARA_R100000479 CEA Genoscope 3300037847 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 18.5918 66.622 315709536 663753 37 0 50 0 0.0 Metagenome 3300027154 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepA_8h DOE Joint Genome Institute (JGI) 3300027154 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 171405391 324271 121 5 152 13 SRX5245224 Unrestricted 18.42 Metagenome 3300010360 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama - MetaG Plot_6 DOE Joint Genome Institute (JGI) 3300010360 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes cpan@ou.edu Chongle Pan No Environmental Terrestrial Tropical forest Soil Bulk soil Tropical forest soil 9.1086 -79.8436 4565641945 10202699 2032 110 3633 205 SRX2525681 Unrestricted 0.0 Metagenome 3300045863 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from the Phantom Fumarole Area, Yellowstone National Park, WY, United States - MSUNE_PF_01 University of Wisconsin, Madison 3300045863 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.24158 -110.72458 51270448 108495 21 6 29 8 0.0 Metagenome 3300034179 *Microbiome Permanent Draft Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China - KO4 Sun Yat-Sen University 3300034179 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy No Yes yuxiaoli92@163.com Xiaoli Yu No Environmental Aquatic Intertidal zone Marine Mangrove sediment mangrove sediment 23.45 116.43 538724069 1240127 432 8 902 17 0.0 Metagenome 3300029855 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37270 Beijing Genomics Institute (BGI) 3300029855 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 230305402 306991 199 0 289 0 0.0 Metagenome 3300070299 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_002-M-20160927-COMP-DNA1 3300070299 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 86452865 243789 138 9 274 13 0.0 Metagenome 3300026667 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized -NN613 (SPAdes) DOE Joint Genome Institute (JGI) 3300026667 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 6494152 22122 46 3 95 0 SRX1986972 Unrestricted 0.0 Metagenome 3300006422 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 158479027 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300006422 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 1750997 5100 5 0 8 0 SRX024519, SRX024520 0.0 Metagenome 3300008635 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763901136 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008635 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 133578275 201311 126 0 135 0 0.0 Metagenome 3300026955 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - Naphthalene biodegradation metagenome 13C8doseA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026955 Metagenome Analysis spades v. 3.11.1 Yes Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.292222 -73.604444 2720902 7686 4 3 12 3 Unrestricted 0.0 Metagenome 3300037099 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 E1 30-34 DOE Joint Genome Institute (JGI) 3300037099 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.047 545270152 934287 226 17 348 13 SRX8138853 Unrestricted 12.07 Metagenome 3300011756 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00637 Weill Cornell Medical College 3300011756 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.81 -73.94 38360961 55209 29 0 51 0 SRX822604 0.0 Metagenome 2004247003 *Microbiome Permanent Draft Hypersaline mat microbial communities from Guerrero Negro, Baja California Sur, Mexico Hypersaline mat microbial communities from Guerrero Negro, Mexico - 3-4 mm depth into microbial mat DOE Joint Genome Institute (JGI) 2004247003 Metagenome Analysis No Yes nrpace@colorado.edu Pace, Norman Yes 18523433 Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Microbial mats Hypersaline mat 27.68908 -113.917 6-9 8215056 13330 9 0 5 0 0.0 Metagenome 2049941001 *Microbiome Permanent Draft Mixed alcohol bioreactor microbial communities from Texas A&M University Mixed alcohol bioreactor microbial communities from Texas A and M University - 40C, day 16 DOE Joint Genome Institute (JGI) 2049941001 Metagenome Analysis Newbler released based on JGI ITS No Yes tgentry@ag.tamu.edu Terry Gentry Yes 22761870 Engineered Biotransformation Unclassified Mixed alcohol bioreactor Unclassified Mixed alcohol bioreactor 30.620833 -96.341111 5.7-6.4 108660417 296298 94 0 140 0 Unrestricted 0.0 Metagenome 3300012826 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - DID2877_E24_FP2 MG DOE Joint Genome Institute (JGI) 3300012826 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie Yes 29545786 Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 87772469 118889 102 0 131 1 SRX3564787 Unrestricted 0.0 Metagenome 3300005935 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKN DOE Joint Genome Institute (JGI) 3300005935 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli, Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 855455100 2397525 437 5 842 7 SRX2747202 Unrestricted 0.0 Metagenome 3300025496 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_13_40 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025496 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 271177088 509858 100 4 185 2 SRX3003644 Unrestricted 0.0 Metagenome 3300046815 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 soil DOE Joint Genome Institute (JGI) 3300046815 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.587743 -123.193438 6.76 271298558 490333 168 10 360 15 Unrestricted 21.21 Metagenome 3300006244 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764811490 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006244 Metagenome Analysis SPADES v3.6.1 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 21672235 36973 17 0 31 0 0.0 Metagenome 3300003201 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment Column4K1-120 454 Life Sciences 3300003201 Metagenome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.342219 40.479289 6-8 0 0 0 0 0 0 0.0 Metagenome 3300022839 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #337 DOE Joint Genome Institute (JGI) 3300022839 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 94401441 197122 31 0 50 1 SRX4396773 Unrestricted 35.97 Metagenome 3300006303 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT234_1_1000m University of Hawaii 3300006303 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Aphotic zone Marine 22.75 -158.0 166039504 455770 304 23 491 29 0.0 Metagenome 3300023094 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L213-509R-2 DOE Joint Genome Institute (JGI) 3300023094 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 632857600 1329644 492 133 796 216 SRX4798766 Unrestricted 12.92 Metagenome 7000000073 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158479027 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000073 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 135223466 227145 0 0 0 0 0.0 Metagenome 3300029210 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021221-45 Beijing Genomics Institute (BGI) 3300029210 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 142318642 178854 96 0 144 0 0.0 Metagenome 3300001323 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A26-5cm)- 6 month illumina University of Tennessee 3300001323 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 15543463 83405 194 13 416 47 0.0 Metagenome 3300050560 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_SEK1_1_to_SEK1 DOE Joint Genome Institute (JGI) 3300050560 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.244 315134284 480056 136 72 217 111 Unrestricted 33.19 Metagenome 7000000185 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159551223 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000185 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 106664458 186641 0 0 0 0 0.0 Metagenome 3300020696 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 05NOV2007 epilimnion DOE Joint Genome Institute (JGI) 3300020696 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 80341740 158801 70 12 118 26 Unrestricted 0.0 Metagenome 3300000715 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 73 DOE Joint Genome Institute (JGI) 3300000715 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 12462193 36450 48 0 80 0 SRX4341347 Unrestricted 0.0 Metagenome 3300006111 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Jul08 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006111 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 263384860 711048 265 36 455 65 SRX2565401 Unrestricted 0.0 Metagenome 3300012263 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Club lake, Antarctica - Metagenome #318 DOE Joint Genome Institute (JGI) 3300012263 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5417 78.2467 86361097 177981 75 1 129 2 SRX3241663 Unrestricted 0.0 Metagenome 3300021255 *Microbiome Draft Cattle and sheep rumen microbial communities from New Zealand, for comparative studies Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly DOE Joint Genome Institute (JGI) 3300021255 Metagenome Analysis SPADES 3.11.0 released per Natalia and Tijana Yes Yes cfan@lbl.gov; NNIvanova@lbl.gov Hei Fan; Natalia Ivanova No Host-associated Mammals Stomach Digestive system Rumen Cattle and sheep rumen -42.26 171.6 2383712908 4455438 1270 30 2848 26 0.0 Metagenome 3300013658 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00512 Weill Cornell Medical College 3300013658 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.89 -73.85 16111151 19273 14 0 25 0 SRX822481 0.0 Metagenome 3300001064 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN577 DOE Joint Genome Institute (JGI) 3300001064 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.070856 -96.582821 201485 715 15 1 18 0 SRX3311853 Unrestricted 0.0 Metagenome 3300026689 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN581 (SPAdes) DOE Joint Genome Institute (JGI) 3300026689 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.070856 -96.582821 12089800 35116 34 3 48 2 SRX1986914 Unrestricted 0.0 Metagenome 3300013917 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00334 Weill Cornell Medical College 3300013917 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.81 -73.94 14217722 21077 10 0 18 0 SRX822307 0.0 Metagenome 3300035544 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B3.1_Sample3.Rodeo1.Well665 DOE Joint Genome Institute (JGI) 3300035544 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 152691170 226985 140 0 182 0 SRX8352895 Unrestricted 74.91 Metagenome 3300013346 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100363 University of Pennsylvania 3300013346 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17274587 40985 39 7 85 17 SRX756294 0.0 Metagenome 3300001402 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 210-3 deep-092012 DOE Joint Genome Institute (JGI) 3300001402 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 136248588 283926 98 6 157 5 SRX1987664 Unrestricted 0.0 Metagenome 3300022520 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 E2 20-24 DOE Joint Genome Institute (JGI) 3300022520 Metagenome Analysis spades v. 3.11.1-check Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0468 87106692 222768 144 4 238 4 SRX4415323, SRX8657961 Unrestricted 0.0 Metagenome 3300001944 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Cabo Marshall, Isabella Island, Equador - GS036 J. Craig Venter Institute (JCVI) 3300001944 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine -0.02083333 -91.19778 59116625 109167 79 0 89 0 0.0 Metagenome 3300045037 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Plains ecozone, Canada - Lake 04-622 Genome Quebec 3300045037 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 59.798928 -122.523299 1077843692 2678657 626 234 1137 364 0.0 Metagenome 3300000768 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 25AUG2008 epilimnion DOE Joint Genome Institute (JGI) 3300000768 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300002536 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert microbial communities from Antarctic Dry Valleys - UQ313 DOE Joint Genome Institute (JGI) 3300002536 Metagenome Analysis Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert -78.0544 164.0209 19508358 19830 10 0 17 0 SRX3329645 Unrestricted 0.0 Metagenome 3300005709 *Microbiome Permanent Draft Freshwater microbial communities from Lake Kinneret, Israel Aquatic microbial communities from Lake Kinneret, Israel - sample 7 Macrogen 3300005709 Metagenome Analysis Unkonwn No Yes beja@tx.technion.ac.il Beja O No Environmental Aquatic Lentic Freshwater Unclassified Freshwater 32.7872 35.6176 35861 34 0 0 0 0 0.0 Metagenome 3300070610 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_041-O-20200706-COMP-DNA1 3300070610 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 13513486 41862 72 12 144 27 0.0 Metagenome 3300014678 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01349 Weill Cornell Medical College 3300014678 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.84 -73.83 37019492 55334 26 0 30 0 SRX823289 0.0 Metagenome 3300041406 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 DOE Joint Genome Institute (JGI) 3300041406 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.8942 -103.685 605727406 1561133 691 54 1204 90 SRX14827169 Unrestricted 6.59 Metagenome 3300047324 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Frasne, France - Sphagnum magellanicum 6OTC_MAG_FR DOE Joint Genome Institute (JGI) 3300047324 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 1530854879 2947836 580 150 966 252 SRX14794120 Unrestricted 7.75 Metagenome 3300038955 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog34 BILS 3300038955 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 4112749 9912 8 1 13 2 ERX1594856 0.0 Metagenome 3300023078 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L066-202C-4 DOE Joint Genome Institute (JGI) 3300023078 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 260874820 666718 456 83 834 138 SRX4799436 Unrestricted 7.35 Metagenome 3300004889 *Microbiome Permanent Draft Ecklonia radiata associated microbial communities from Long Bay, Malabar Australia Ecklonia radiata associated microbial communities from Long Bay, Malabar Australia - H3 University of New South Wales 3300004889 Metagenome Analysis idba-ud released per JGI data release policy Yes Yes z.qiu@student.unsw.edu.au Zhiguang Qiu No Host-associated Algae Unclassified Unclassified Unclassified Ecklonia radiata associated 77640614 127696 46 22 74 33 0.0 Metagenome 3300042532 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 DOE Joint Genome Institute (JGI) 3300042532 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.1836 -97.9974 412021909 1170552 636 22 1151 52 Unrestricted 6.95 Metagenome 3300038667 *Microbiome Draft Saline water viral communities of the coast of Qinghai Lake, Qinghai province, China Saline water viral communities of the coast of Qinghai Lake, Qinghai province, China - QHH9 Beijing Novogene Bioinformatics Technology Co., Ltd 3300038667 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes 1054738805@qq.com Chengxiang Gu No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 37.85561985 95.25574197 24335601 66807 54 2 154 12 0.0 Metagenome 3300069505 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Woodworth, Northern Plains, ND, USA - WOOD_002-M-20140507-COMP-DNA1 re-annotation Argonne National Laboratory 3300069505 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12823 -99.24136 7502840 23343 47 6 97 9 ERX2134046 0.0 Metagenome 3300035047 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B4.3_Sample4.Rodeo3.Well1209 DOE Joint Genome Institute (JGI) 3300035047 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 357111462 610893 296 0 446 0 SRX8353663 Unrestricted 24.93 Metagenome 3300012609 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00357 Weill Cornell Medical College 3300012609 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.52 -74.19 34514529 43302 15 1 24 4 SRX822329 0.0 Metagenome 3300044845 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Jun2012-rr0307 DOE Joint Genome Institute (JGI) 3300044845 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1172344759 1740100 365 73 449 98 Unrestricted 19.48 Metagenome 3300004214 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG17_big_fil_post_rev_8/21/14_2.50 DOE Joint Genome Institute (JGI) 3300004214 Metagenome Analysis MEGAHIT v. 0.2.0 revert back to private per Christa Yes Yes jbanfield@berkeley.edu, jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield, Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 1221945471 2879647 1596 162 2783 298 SRX3348987 Unrestricted 0.0 Metagenome 3300045534 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Iowa River, Iowa, USA - NASQAN2011_262 DOE Joint Genome Institute (JGI) 3300045534 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 41.178 -91.182 564495799 1218723 512 157 767 301 Unrestricted 0.0 Metagenome 3300024058 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from Mariana Trench to uncover new lineages of life (NeLLi) - CR04 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300024058 Metagenome Analysis spades v. 3.11.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Ocean trench Marine Sediment Deep subsurface 12.4764 144.8648 1136933614 2560110 595 6 1107 15 SRX3203977 Unrestricted 0.0 Metagenome 3300037126 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0819M20re DOE Joint Genome Institute (JGI) 3300037126 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0387 243390389 407495 191 0 329 0 SRX8670444 Unrestricted 13.43 Metagenome 3300014880 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_16_10D DOE Joint Genome Institute (JGI) 3300014880 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9233 -106.9516 268612097 617491 306 13 675 43 SRX3780502 Unrestricted 4.97 Metagenome 3300035655 *Microbiome Permanent Draft Human fecal microbial commmunities from Fecal Microbiota Transplantation (FMT) for ulcerative colitis - University of Washington Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01D693B1 University of Washington 3300035655 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes Yes 26288277 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 151452801 229972 181 0 273 0 SRX1131726 0.0 Metagenome 3300059757 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1548B-02 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059757 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2319 -123.8812 212117991 431371 135 8 216 8 SRX2753718 Unrestricted 0.0 Metagenome 3300043769 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Para, Brazil - F5-3A DOE Joint Genome Institute (JGI) 3300043769 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -3.2963 -54.9633 693467904 1775373 311 15 647 30 Unrestricted 9.2 Metagenome 3300001567 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Hydrocarbon resource environments microbial communities from Canada and USA - Toluene degrading community from Alberta, Canada McGill University 3300001567 Metagenome Analysis released per user request No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 54.0 -114.0 605635502 1184637 486 1 810 0 0.0 Metagenome 3300060449 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210612_16_13 DOE Joint Genome Institute (JGI) 3300060449 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 478510366 672003 249 151 323 185 Unrestricted 44.46 Metagenome 3300013134 *Microbiome Permanent Draft Beach sand microbial communities from Municipal Pensacola Beach, Florida Beach sand microbial communities from Municipal Pensacola Beach, Florida - OS-S3 Georgia Institute of Technology 3300013134 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Terrestrial Sand Soil Unclassified Beach sand 30.3262 -87.1745 315651363 772423 249 0 427 7 SRX695907 0.0 Metagenome 3300069446 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_060-M-20170706-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069446 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 230931372 624495 189 17 326 24 0.0 Metagenome 3300014694 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00307 Weill Cornell Medical College 3300014694 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.99 45160589 75750 22 0 32 0 SRX822280 0.0 Metagenome 3300007653 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1546C-3 DOE Joint Genome Institute (JGI) 3300007653 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2311 -123.8825 250386205 476195 283 84 447 127 SRX2753622 Unrestricted 0.0 Metagenome 3300000940 *Microbiome Permanent Draft Sinkhole freshwater microbial communities from Lake Huron, US Sinkhole freshwater microbial communities from Lake Huron, USA - r2gDNA Night1 University of Michigan 3300000940 Metagenome Analysis released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Sinkhole Freshwater Unclassified Sinkhole freshwater 45.19843 -83.32721 80647045 237594 204 32 353 62 0.0 Metagenome 3300065516 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 781 in Three Hills, Alberta, Canada - S00JY_0749 Microbiome Insights 3300065516 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.46151696 -113.1723542 17018003 25068 19 0 36 1 0.0 Metagenome 3300030455 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces viral communities from colorectal cancer patient in Boston, USA - MG100075 University of Michigan 3300030455 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 42.36 -71.06 1506784 2680 1 0 4 0 0.0 Metagenome 3300029072 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 12_12M Beijing Genomics Institute (BGI) 3300029072 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 30883937 39864 38 0 45 0 ERX490936 0.0 Metagenome 3300044796 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Soil microbial communities from peatland in Alberta, Canada - SB-EXT 0-10 cm DOE Joint Genome Institute (JGI) 3300044796 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4579 -114.8736 1140220656 1659895 452 14 664 22 Unrestricted 13.1 Metagenome 3300041545 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Bulk soil microbial community from Lincoln, Canterbury, New Zealand - BS17_6 MetaG AgResearch, New Zealand, Mosgeil 3300041545 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Environmental Terrestrial Unclassified Soil Agricultural land Dairy farm pasture soil -43.648506 172.343549 887705715 2193180 249 15 851 48 0.0 Metagenome 3300056776 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MB10 DOE Joint Genome Institute (JGI) 3300056776 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 39506154 101719 108 4 255 6 Restricted 29.9 Metagenome 3300001589 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-40 DOE Joint Genome Institute (JGI) 3300001589 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 50.0 -145.0 477331559 1074581 107 207 203 320 SRX2553662 Unrestricted 0.0 Metagenome 3300045450 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Leaf microbial communities from farm grass in Deerfield, Massachusetts, United States - Ryegrass_Phyllosphere_control4 DOE Joint Genome Institute (JGI) 3300045450 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 42.4788 -72.5788 1104340866 2092423 529 264 749 368 Unrestricted 0.0 Metagenome 3300043787 *Microbiome Permanent Draft Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA - PH 28 years plot 10 DOE Joint Genome Institute (JGI) 3300043787 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes luizdomeignoz@gmail.com Luiz Domeignoz Horta No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 42.303 -72.1228 2058537178 3373871 344 48 603 65 SRX15792983 Unrestricted 12.88 Metagenome 3300065649 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 823 in Enchant, Alberta, Canada - S00JY_0076 Microbiome Insights 3300065649 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 50.1313992 -112.190483 315850910 450009 131 1 183 1 0.0 Metagenome 3300004141 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG05_land_8/20/14_0.10 DOE Joint Genome Institute (JGI) 3300004141 Metagenome Analysis MEGAHIT v. 0.2.0 revert back to private per Christa Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 78008875 276956 134 38 309 80 SRX3348124 Unrestricted 0.0 Metagenome 3300000060 *Microbiome Permanent Draft Panchlora sp. gut microbial communities from Gamboa, Panama Panchlora_midgut_metagenome v3 (version 3) DOE Joint Genome Institute (JGI) 3300000060 Metagenome Analysis Soap denovo, Newbler and minimus released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie Yes 28545131 Host-associated Arthropoda: Insects Midgut Digestive system Unclassified Panchlora sp. gut 9.116667 -79.7 765263861 1473007 110 17 254 40 Unrestricted 0.0 Metagenome 3300038689 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Realigned salt marsh sediment microbial communities from Mersea Island, United Kingdom - S MIRM 1A University of York 3300038689 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Realigned salt marsh sediment 51.79675 0.921833 33939676 103296 89 2 160 2 0.0 Metagenome 3300011580 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00671 Weill Cornell Medical College 3300011580 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.8 -73.94 33031070 37350 18 5 15 6 SRX822638 0.0 Metagenome 3300012468 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100205 University of Pennsylvania 3300012468 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 13960913 31042 15 0 14 0 SRX756694 0.0 Metagenome 2156126007 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Estuarine microbial communities from Columbia river, CM, sample from South Channel ETM site, CRE-ETM-794-796 University of South Carolina 2156126007 Metagenome Analysis Newbler 2.5.3 using the default parameters released per JGI data release policy No Yes mariyasmit@hotmail.com Mariya Smit, Mariya W. Smit No Environmental Aquatic Intertidal zone Marine Estuary Marine estuarine 46.201 -123.821 14 26015515 69382 106 19 80 0 0.0 Metagenome 3300037672 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR11_2 DOE Joint Genome Institute (JGI) 3300037672 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Crustal Fluids crustal fluids 47.7534 -127.7638 1170926443 2793393 559 404 1105 645 SRX9096403 Unrestricted 22.89 Metagenome 3300027373 *Microbiome Permanent Draft Bioremediated contaminated groundwater microbial communities from North Railroad Avenue plume (NRAP), New Mexico Bioremediated contaminated groundwater microbial communities from EPA Superfund site, New Mexico - SAE3-05 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027373 Metagenome Analysis spades v. 3.11.1 Yes Yes NNIvanova@lbl.gov; rebecca.reiss@nmt.edu Natalia Ivanova; Rebecca Reiss Yes 27980706 Environmental Aquatic Groundwater Deep subsurface Contaminated Bioremediated contaminated groundwater 35.992 -106.0797 324193948 524551 276 5 417 9 SRX3322776 Unrestricted 0.0 Metagenome 3300027638 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert microbial communities from Antarctic Dry Valleys - UQ889 (SPAdes) DOE Joint Genome Institute (JGI) 3300027638 Metagenome Analysis spades v. 3.11.1 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert -78.1358 164.1187 376993893 818113 255 0 435 0 SRX2555337 Unrestricted 0.0 Metagenome 3300000644 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 19AUG2008 hypolimnion DOE Joint Genome Institute (JGI) 3300000644 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300047511 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lake Yojoa, Honduras - Yojoa_01_2020_E_epi (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047511 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Lake Freshwater Unclassified Freshwater 14.8744 -87.9835 713809936 1223012 260 101 504 166 Unrestricted 0.0 Metagenome 3300036522 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C5-7C DOE Joint Genome Institute (JGI) 3300036522 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 197181650 606528 410 14 765 22 SRX8803308 Unrestricted 4.83 Metagenome 3300070686 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_006-O-20180928-COMP-DNA1 3300070686 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 56936545 156264 114 31 183 38 0.0 Metagenome 3300026540 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_05_30cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026540 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 824872132 1393929 392 4 720 7 SRX2521038 Unrestricted 0.0 Metagenome 3300032108 *Microbiome Permanent Draft Microbial communities from the deep biosphere Serpentinite fluid microbial communities from Manleluag Spring National Park, Philippines - Sample_121018_ML2_sterivex_filter re-assembly The Marine Biological Laboratory 3300032108 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Alkaline Non-marine Saline and Alkaline Unclassified Freshwater 15.67 120.24 38340564 91272 59 3 86 2 SRX2058448 0.0 Metagenome 3300043368 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 290-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043368 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9789 -107.0358 477483204 1293425 442 43 834 71 Unrestricted 7.6 Metagenome 3300020267 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556026-ERR599108) CEA Genoscope 3300020267 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 2.0663 -84.5304 252541151 639806 266 15 407 25 0.0 Metagenome 3300055447 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.19C.8 SIP fraction DOE Joint Genome Institute (JGI) 3300055447 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 338914364 618119 145 22 236 31 Unrestricted 17.9 Metagenome 3300043315 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-361 Genome Quebec 3300043315 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.839629 -102.425965 1742598602 3937804 507 175 798 332 0.0 Metagenome 2077657012 *Microbiome Permanent Draft Bankia setacea gill microbial communities from Puget Sound, Washington, USA Bankia setacea gill microbiome from Puget Sound WA DOE Joint Genome Institute (JGI) 2077657012 Metagenome Analysis Newbler released based on JGI ITS No Yes distel@oglf.org Daniel Distel, Dan Distel No Host-associated Mollusca Gills Respiratory system Extracellular Bankia setacea gill 47.85072 -122.33843 13386253 17884 0 0 0 0 Unrestricted 0.0 Metagenome 3300029286 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_18m DOE Joint Genome Institute (JGI) 3300029286 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater 39.9879 -1.8737 2003519189 3661310 1504 38 2351 51 SRX5338804 Unrestricted 15.1 Metagenome 3300003803 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH13Jun08 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003803 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 28875024 73411 42 24 62 30 SRX2565407 Unrestricted 0.0 Metagenome 3300037390 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18B_1_15_7 mgh University of Alberta 3300037390 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 40041251 52451 21 5 26 4 0.0 Metagenome 3300039038 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - SMB1 Michigan State University 3300039038 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 34.536667 122.141667 27724293 68142 304 5 1137 9 0.0 Metagenome 3300052907 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Wyoming, USA - R_C1_S1 DOE Joint Genome Institute (JGI) 3300052907 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 41.01141 -106.54343 300465204 536063 182 48 338 61 Unrestricted 22.51 Metagenome 3300051380 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - HDCR3D-21 DOE Joint Genome Institute (JGI) 3300051380 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 642245278 1110617 711 86 1171 123 Unrestricted 14.81 Metagenome 3300005222 *Microbiome Permanent Draft Microbial communities from the Yellowstone National Park, bulk metagenomes as controls for mini-metagenomic methods Norris Geyser Basin Perpetual Spouter 2 - Microbial communities from the Yellowstone National Park, bulk metagenomes as controls for mini-metagenomic methods Stanford University 3300005222 Metagenome Analysis SpadeV3 released per JGI data release policy No Yes brianyu@stanford.edu, brian.yu@czbiohub.or Brian Yu No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified hotspring 44.726683 -110.70915 5.5 53507379 85675 63 1 119 7 0.0 Metagenome 3300020289 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000242 (ERX556122-ERR599019) CEA Genoscope 3300020289 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -9.4112 66.3281 144977850 367664 166 6 286 7 0.0 Metagenome 2189573021 *Microbiome Permanent Draft Panchlora sp. gut microbial communities from Gamboa, Panama Panchlora_midgut_metagenome v1 DOE Joint Genome Institute (JGI) 2189573021 Metagenome Analysis Soap denovo, Newbler and minimus released based on JGI ITS No Yes currie@bact.wisc.edu Cameron Currie Yes 28545131 Host-associated Arthropoda: Insects Midgut Digestive system Unclassified Panchlora sp. gut 9.116667 -79.7 19455161 28645 0 0 0 1 Unrestricted 0.0 Metagenome 3300012861 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched mosquito-associated microbial communities from UW Madison campus, WI, USA - HID1973M_E0 MG DOE Joint Genome Institute (JGI) 3300012861 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 129941174 220474 121 0 173 0 SRX3564469 Unrestricted 0.0 Metagenome 3300002224 *Microbiome Permanent Draft Marine microbial communities from the Baltic Sea examining degradability of arctic, terrigenous carbon compounds in the sea Marine microbial communities from the Baltic Sea - M1t6 BS2 (105N) Karolinska Institutet 3300002224 Metagenome Analysis released per JGI data release policy No Yes daniel.herlemann@io-warnemuende.de, daniel.herlemann@emu.ee Daniel Herlemann, Daniel P. Herlemann No Environmental Aquatic Oceanic Marine Unclassified Marine 58.133 10.0 117009831 561055 122 36 283 85 0.0 Metagenome 3300003966 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Enrichment cultures from Harmful Algal Blooms in Lake Erie HABS-00-39862 University of Michigan 3300003966 Metagenome Analysis IDBA-UD v1.1.1 released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lentic Freshwater Unclassified Freshwater -77.611214 163.119356 47682766 50250 28 0 37 0 0.0 Metagenome 3300049740 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_131002.NP2 DOE Joint Genome Institute (JGI) 3300049740 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 1889158736 3882348 951 200 1481 346 Unrestricted 16.84 Metagenome 3300049362 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - 7-1 DOE Joint Genome Institute (JGI) 3300049362 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 360614535 960906 408 10 810 21 Unrestricted 7.5 Metagenome 3300012147 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #564 DOE Joint Genome Institute (JGI) 3300012147 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 153987876 339413 102 13 152 16 SRX3242024 Unrestricted 0.0 Metagenome 3300020814 *Microbiome Permanent Draft Metagenomes from anaerobic digester of solid waste Granular sludge microbial community from anaerobic digester, University of Toronto, Ontario, Canada - UASBVu03_granules megahit University of Toronto 3300020814 Metagenome Analysis Megahit v1.1.1 Yes Yes elizabeth.edwards@utoronto.ca; camillaln@gmail.com Elizabeth A. Edwards; Camilla Nesb? No Engineered Bioreactor Unclassified Anaerobic Unclassified granular sludge 43.6629 -79.3957 941623397 1647165 527 3 881 3 0.0 Metagenome 3300064925 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 730 in Mannville, Alberta, Canada - S00JY_0677 Microbiome Insights 3300064925 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.1127756 -111.0758746 3445023 5227 10 1 30 2 0.0 Metagenome 3300009514 *Microbiome Permanent Draft Microbial Role in Biogeochemical Cycling in a Beach Aquifer System Microbial community of beach aquifer porewater from Cape Shores, Lewes, Delaware, USA - F-1W University of Delaware 3300009514 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes fielde14@ecu.edu Erin Field No Environmental Aquatic Unclassified Unclassified Unclassified beach aquifer porewater 38.7855 -75.1045 7.12 982261981 2192544 1283 8 2025 19 0.0 Metagenome 2081372012 *Microbiome Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI - Type I v2 (version 2) DOE Joint Genome Institute (JGI) 2081372012 Metagenome Analysis Newbler released based on JGI ITS No Yes tmcmahon@engr.wisc.edu, tmcmahon@engr.wisc.edu; 1422460556@qq.com; 15527825168@163.com Katherine McMahon, Katherine McMahon; Song Wei; GuoFeng Yes 20148930 Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Wastewater treatment 43.078418 -89.386482 7-7.5 23429396 27797 0 0 0 0 Unrestricted 0.0 Metagenome 3300005444 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG DOE Joint Genome Institute (JGI) 3300005444 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 4571613329 12685945 3182 103 5430 212 SRX2744870 Unrestricted 0.0 Metagenome 3300019785 *Microbiome Permanent Draft Permafrost microbial communities from Stordalen Mire, Sweden Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (PacBio error correction) DOE Joint Genome Institute (JGI) 3300019785 Metagenome Analysis metalrec/blasr v. metalrec version 1.0.2/blasr 1.3.1 Yes Yes rich.270@osu.edu Virginia Rich Yes 30013118 Environmental Terrestrial Wetlands Soil Permafrost Fen 68.35 19.05 552789846 1017327 342 4 474 3 SRX3903289, SRX3903288, SRX3903290, SRX3903292, SRX3903291, SRX3903294, SRX3903293 Unrestricted 9.18 Metagenome 3300026296 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026296 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.718176 -123.652732 548056717 951020 258 9 453 13 SRX1991096 Unrestricted 0.0 Metagenome 3300005902 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_102 DOE Joint Genome Institute (JGI) 3300005902 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 413123267 1334805 456 12 835 30 SRX2564561, SRX2581032 Unrestricted 0.0 Metagenome 3300002904 *Microbiome Permanent Draft Contaminated subsurface sediment microbial communities from Dusseldorf, Germany, analyzing toluene degradation Tol_7 3300002904 Metagenome Analysis de novo assembly algorithm of CLC Genomics Workbench released by JGI data releasing policy No Yes emnabouhajja@gmail.com Emna Bouhajja No Environmental Terrestrial Sediment Geologic Unclassified Contaminated subsurface sediment 51.21 6.46 14126 14 0 0 0 0 0.0 Metagenome 3300002442 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP08-I2 3300002442 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300040954 *Microbiome Permanent Draft Sediment microbial communities from Haima cold seep, South China Sea, China Sediment microbial communities from Haima cold seep, South China Sea, China - SY70.5.1_HM2M Magigene technology co., LTD. 3300040954 Metagenome Analysis IDBA v. 1.1.3 released by JGI data releasing policy No Yes sulei@tongji.edu.cn Lei Su No Environmental Aquatic Cold seeps Marine Sediment Sediment 16.729163 110.473065 0 to .02 784581883 882832 131 13 163 13 0.0 Metagenome 3300025366 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH15Jul08 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025366 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 99453105 212693 103 18 154 31 SRX2565425 Unrestricted 0.0 Metagenome 3300013551 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00662 Weill Cornell Medical College 3300013551 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.82 -73.93 2062743 1869 0 0 0 0 SRX822629 0.0 Metagenome 3300008214 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius longissimus B BELIZE.2 DOE Joint Genome Institute (JGI) 3300008214 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 63858182 107772 65 3 97 6 SRX2711653 Unrestricted 0.0 Metagenome 3300007872 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 764143897 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007872 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 2759616 7425 5 0 16 5 SRX025203 0.0 Metagenome 3300007560 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1560A-02 DOE Joint Genome Institute (JGI) 3300007560 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2638 -123.4649 419412797 818439 369 30 588 47 SRX2753754 Unrestricted 7.47 Metagenome 7000000223 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763840445 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000223 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 5971036 14055 0 0 0 0 0.0 Metagenome 3300008889 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T5 (1) BES, Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO Shell Corporation 3300008889 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl .ac.uk, ianhead@ncl .ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 95942127 345381 141 2 242 4 0.0 Metagenome 3300049230 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB2 DOE Joint Genome Institute (JGI) 3300049230 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 61781333 159570 229 2 415 7 Unrestricted 19.81 Metagenome 3300014571 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS60_0 University of Hohenheim 3300014571 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 127675257 187012 77 0 120 0 0.0 Metagenome 3300045151 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_1_B DOE Joint Genome Institute (JGI) 3300045151 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 148280475 173263 85 1 119 1 Unrestricted 131.37 Metagenome 3300022685 *Microbiome Permanent Draft Carpinteria Salt Marsh Metagenomes 2014 to 2017 Marine microbialite microbial communities from marsh intertidal zone in Carpinteria, CA, United States - T4 University of California, Irvine 3300022685 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Aquatic Intertidal zone Marine Microbialites Microbialites 34.401 -119.534 37352975 39124 16 8 15 6 0.0 Metagenome 3300025017 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-20 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025017 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 413292793 735177 339 4 563 11 SRX3198635 Unrestricted 0.0 Metagenome 3300037853 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 DOE Joint Genome Institute (JGI) 3300037853 Metagenome Analysis MEGAHIT v. 1.2.7 Released on PI's request No Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Host-associated Plants Unclassified Roots Unclassified plant roots -19.2822 -43.5936 1671277363 2724280 846 75 1470 124 SRX4939667 0.0 Metagenome 3300017569 *Microbiome Permanent Draft Fecal microbial communities from free-living howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from free-living howler monkeys from Sao Paulo Zoo, Brazil - Ind. 4, S6 Center for Advanced Technologies in Genomics, Sao Paulo University 3300017569 Metagenome Analysis SPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 49578785 90536 88 2 116 3 0.0 Metagenome 3300028058 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_07AUG2017_LD1 DOE Joint Genome Institute (JGI) 3300028058 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 151703877 275233 24 72 34 133 SRX5345829 Unrestricted 15.04 Metagenome 3300055258 *Microbiome Permanent Draft Soil microbial communities from various environments and locations in the USA Soil microbial communities from farm land in Prosser, Washington, USA - PRS2_TOP DOE Joint Genome Institute (JGI) 3300055258 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nancy.hess@pnnl.gov Nancy Hess No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.2517 -119.7288 1141528809 2064464 669 75 1281 95 Unrestricted 19.16 Metagenome 3300048796 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-P1(2) 20-24 DOE Joint Genome Institute (JGI) 3300048796 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3549 19.0438 645139657 965230 137 12 214 20 Restricted 14.56 Metagenome 3300017587 *Microbiome Permanent Draft Bras del Port Febrero 2014 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CR41 Febrary 2014 University of Valencia 3300017587 Metagenome Analysis idba.1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Mar?a Dolores Ramos Barbero No Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Unclassified Non-marine hypersaline water 38.1922 -0.5918 48883389 159207 3 0 3 0 0.0 Metagenome 3300028586 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T30 DOE Joint Genome Institute (JGI) 3300028586 Metagenome Analysis spades v. 3.11.1 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7043 2364763104 4278380 790 409 897 660 SRX5272827 Unrestricted 28.5 Metagenome 3300005855 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls B (FF_Mn_B) MetaG (SPADES assembly) (version 2) DOE Joint Genome Institute (JGI) 3300005855 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, jim.fredrickson@pnnl.gov Natasha Ivanova, Jim Fredrickson No Environmental Aquatic Lotic Freshwater Unclassified Freshwater 44.376 -110.69 119603209 166084 74 0 78 1 SRX2577163 Unrestricted 0.0 Metagenome 3300012992 *Microbiome Permanent Draft Pig Viral Communities from oral cavities and ears of healthy adults pigs from Denmark Pig viral communities from ears skin of healthy adult pig - Individual 0 Autonomous University of Barcelona 3300012992 Metagenome Analysis SPAdes-3.9.1-Linux released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Skin Integumentary system Surface Pig ears skin 56.0 10.0 186643651 468269 6 0 12 0 0.0 Metagenome 3300045282 *Microbiome Permanent Draft Forest soil microbial communities from boreal-temperate forests in Minnesota, USA Forest soil microbial communities from Hubachek Wilderness Research Center, Ely, Minnesota, USA - Ely AMB CO J1 DOE Joint Genome Institute (JGI) 3300045282 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pankaj.trivedi@colostate.edu Pankaj Trivedi No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 47.55 -92.3 993554832 1636535 306 17 522 21 Unrestricted 14.99 Metagenome 3300040563 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik, Tundra, AK, USA - TOOL_043-O-20170719-COMP-DNA1 Battelle Memorial Institute 3300040563 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 68.66109 -149.37047 2409476 7357 17 0 39 1 0.0 Metagenome 3300064949 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 688 in Beauvallon, Alberta, Canada - S00JY_0019 Microbiome Insights 3300064949 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.394731 -111.1955062 285097416 425693 65 1 97 1 0.0 Metagenome 3300042819 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121 NMDC pilot DOE Joint Genome Institute (JGI) 3300042819 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.920406 -106.94828662 1506541703 3507875 639 12 1190 25 SRX5354620 0.0 Metagenome 3300026835 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 60 (SPAdes) DOE Joint Genome Institute (JGI) 3300026835 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 49268811 115709 61 0 111 0 SRX4341060 Unrestricted 0.0 Metagenome 3300029308 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Indian Ocean - SRB2 Michigan State University 3300029308 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 3.715 105.408333 74349439 226408 1 0 4 0 0.0 Metagenome 3300034689 *Microbiome Permanent Draft Understanding the reciprocal impacts of modified plant cell wall and associated microbiome Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-PdIQD-R2 DOE Joint Genome Institute (JGI) 3300034689 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kalluriudayc@ornl.gov Udaya C. Kalluri No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 32.1348 -81.9657 494078811 517112 42 262 47 98 SRX7584271 Unrestricted 0.0 Metagenome 3300042284 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA MBR feed microbial communities from membrane bioreactor in Denver, Colorado, USA - FD_D307 DOE Joint Genome Institute (JGI) 3300042284 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Wastewater Mine water Industrial wastewater Produced water MBR feed 39.7823 -104.9101 278507241 435469 268 1 364 4 Unrestricted 38.08 Metagenome 3300011871 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00705 Weill Cornell Medical College 3300011871 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.86 -73.91 48428460 72142 20 0 33 0 SRX822672 0.0 Metagenome 3300008141 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763982056 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008141 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 99702060 154051 88 0 121 1 0.0 Metagenome 3300029935 *Microbiome Permanent Draft Bioreactor microbial communities from Stanley sewage treatment plant in Hong Kong Bioreactor microbial communities from Stanley sewage treatment plant in Hong Kong - Hydrogenotrophic denitrifying consortium University of Hong Kong 3300029935 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Engineered Sewage treatment plant Unclassified Wastewater Unclassified Bioreactor 22.28 114.14 35147399 63731 42 2 62 4 SRX449873 0.0 Metagenome 3300046509 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvCe-F(2) 10-14 DOE Joint Genome Institute (JGI) 3300046509 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3547 19.0434 784993685 1206624 278 3 394 4 Restricted 13.69 Metagenome 3300013711 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01092 Weill Cornell Medical College 3300013711 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.65 -73.94 21110136 31504 18 0 28 0 SRX823047 0.0 Metagenome 3300009496 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524 DOE Joint Genome Institute (JGI) 3300009496 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de, hteeling@mpi-bremen.de; agrieb@mpi-bremen.de Hanno Teeling, Hanno Teeling; Anissa Grieb Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 859390191 1643400 740 76 1117 126 SRX2999978 Unrestricted 0.0 Metagenome 3300043474 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 320-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043474 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9528 -107.0669 620207451 1561270 399 30 687 59 Unrestricted 6.98 Metagenome 3300060425 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210603_07_09 DOE Joint Genome Institute (JGI) 3300060425 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 901363196 1309580 263 143 343 210 Unrestricted 22.83 Metagenome 3300018425 *Microbiome Finished Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India - point GR3 Spades_77 Life Technologies 3300018425 Metagenome Analysis SPAdes 3.10.1 released by JGI data releasing policy No Yes sarkar.jayeeta12@gmail.com, psar@hijli.iitkgp.ernet.in Pinaki Sar No Engineered Built environment Petroleum sludge Oil refinery Unclassified petroleum sludge 26.18471 91.80725 194108455 365182 123 2 177 2 SRX2510723 0.0 Metagenome 3300002577 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Freshwater sediment microbial communities from Taif River, Saudi Arabia - Upstream of discharge Sample CS1-5 454 Life Sciences 3300002577 Metagenome Analysis No Yes lidong460@gmail.com Dong Li No Environmental Aquatic River Freshwater Sediment Freshwater sediment 21.342219 40.479289 6-8 0 0 0 0 0 0 0.0 Metagenome 3300031397 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #542 DOE Joint Genome Institute (JGI) 3300031397 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 422819141 721192 133 25 140 43 SRX5649483 Unrestricted 36.84 Metagenome 3300046391 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA037-CHU DOE Joint Genome Institute (JGI) 3300046391 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6365 -83.4956 402744510 1073343 347 29 599 42 Unrestricted 8.59 Metagenome 3300005699 *Microbiome Permanent Draft Soil microbial communities from Charlotte, North Carolina, that are pyrene degrading Soil microbial communities from Charlotte, North Carolina, that are pyrene degrading University of North Carolina, Chapel Hill 3300005699 Metagenome Analysis gsAssembler No Yes drsingle@email.unc.edu, drsingle@ad.unc.edu David Singleton No Environmental Terrestrial Loam Soil Contaminated Soil 35.2269444 -80.8433333 7 5507702 9489 10 0 18 0 0.0 Metagenome 3300044829 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_15CD DOE Joint Genome Institute (JGI) 3300044829 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4337 -106.2481 1554963860 2648048 417 45 641 61 SRX20649970 Unrestricted 15.29 Metagenome 3300036510 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T0 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036510 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 77538880 155775 140 4 241 4 SRX8128131, SRX8128132 Unrestricted 0.0 Metagenome 3300044454 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - LIV11-9-19-19 DOE Joint Genome Institute (JGI) 3300044454 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.4269 -120.6436 463925030 1221825 450 17 843 32 Restricted 6.69 Metagenome 3300020706 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 02JUL2007 hypolimnion DOE Joint Genome Institute (JGI) 3300020706 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 85831074 184456 101 13 163 20 Unrestricted 0.0 Metagenome 3300053724 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 endosphere DOE Joint Genome Institute (JGI) 3300053724 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.588086 -123.192277 469080263 587701 149 96 232 140 Unrestricted 0.0 Metagenome 3300038802 *Microbiome Permanent Draft Marine hypoxic microbial communities from the Gulf of Mexico, USA Marine hypoxic microbial communities from the Gulf of Mexico, USA - 2m_Station8_GOM_Metagenome Georgia Institute of Technology 3300038802 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 22075899 50100 61 3 87 3 SRX958769 0.0 Metagenome 3300041830 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_148 MetaG AgResearch, New Zealand, Mosgeil 3300041830 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1483993734 3038309 336 32 1134 40 0.0 Metagenome 3300008999 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545 DOE Joint Genome Institute (JGI) 3300008999 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 421413665 848147 391 96 564 156 SRX2753548 Unrestricted 8.67 Metagenome 3300015690 *Microbiome Permanent Draft Microbial communities associated with sugarcane Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_D05 Universidade Estadual de Campinas 3300015690 Metagenome Analysis Spades released by JGI data releasing policy No Yes scs.rafael@gmail.com Rafael Souza No Host-associated Plants Rhizosphere Roots Unclassified rizhosphere -22.8187222 -47.05896667 10789692 11012 4 0 6 0 0.0 Metagenome 7000000675 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 246515023 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000675 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 50582966 75726 0 0 0 0 0.0 Metagenome 3300002098 *Microbiome Permanent Draft Lentic enriched actinobacterial communities from dystrophic bog Grosse Fuchskuhle, Brandenburg, Germany Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B7 metagenome DOE Joint Genome Institute (JGI) 3300002098 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes sarilog@gmail.com Sarahi Garcia Yes 29848762 Environmental Aquatic Lentic Freshwater Unclassified Lentic 53.152741 13.022518 118162278 265441 34 0 66 0 SRX3323212 Unrestricted 0.0 Metagenome 3300012882 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 DOE Joint Genome Institute (JGI) 3300012882 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 222430772 587378 495 53 1103 100 SRX3899683, SRX3899682 Unrestricted 0.0 Metagenome 3300049381 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - 13-2 DOE Joint Genome Institute (JGI) 3300049381 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 329783849 939729 444 14 772 20 Unrestricted 6.69 Metagenome 3300006486 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 1, subject 159591683 replicate 1 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300006486 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 24005338 42008 6 4 10 10 SRX025505, SRX024601, SRX024602, SRX024720 0.0 Metagenome 3300011478 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00507 Weill Cornell Medical College 3300011478 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.88 -73.86 23213819 26383 10 0 11 0 SRX822476 0.0 Metagenome 3300066278 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_007-O-20170719-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066278 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 5564812 17689 68 6 106 19 0.0 Metagenome 3300029709 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37173 Beijing Genomics Institute (BGI) 3300029709 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 221165727 276199 185 1 241 0 0.0 Metagenome 3300044530 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME16Nov2012-rr0874 DOE Joint Genome Institute (JGI) 3300044530 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 837994944 1263130 313 64 415 87 Unrestricted 25.71 Metagenome 3300026179 *Microbiome Permanent Draft Anaerobic reactors microbiome study Activated sludge microbial communities from lab. scaled anaerobic digester in Belvaux, Luxembourg - ACS0-11 University of Luxembourg 3300026179 Metagenome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 49.506216 5.943617 342011525 402242 80 3 201 3 0.0 Metagenome 3300065625 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 809 in Oyen, Alberta, Canada - S00JY_0308 Microbiome Insights 3300065625 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.10302812 -110.3235998 39912833 58955 25 0 51 0 0.0 Metagenome 3300041529 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_131 MetaG AgResearch, New Zealand, Mosgeil 3300041529 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1777369401 3769522 294 41 1183 68 0.0 Metagenome 3300014188 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Thailand to Iowa, USA - T1 Iowa State University 3300014188 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 12603420 25453 1 2 0 0 SRX1150299 0.0 Metagenome 3300010205 *Microbiome Permanent Draft Phototrophic microbial communities Littoral zone phototrophic microbial communities from Lake Waban, Wellesley, MA - FC W 18b Marine Biological Laboratory 3300010205 Metagenome Analysis CLC released per JGI data release policy No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Lake Freshwater Sediment littoral 42.2876 -71.30117 56828273 68604 10 0 32 0 0.0 Metagenome 3300040011 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_022-M-20140917-COMP-DNA1 Argonne National Laboratory 3300040011 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 16166448 41142 38 4 78 7 ERX2133996 0.0 Metagenome 3300000499 *Microbiome Permanent Draft Salt marsh microbial communities from Little Sippewissett, Woods Hole, MA that are anoxygenic and photosynthetic Microbial Communities from Little Sippewissett Salt Marsh, Woods Hole, MA that are anoxygenic and photosynthetic, Marine photosynthetic community that grows at 940nm with malate Marine Biological Laboratory 3300000499 Metagenome Analysis No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Intertidal zone Marine Salt marsh Salt Marsh 41.5758508 -70.635807 55916564 117246 20 0 62 4 0.0 Metagenome 3300020157 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L224-25m DOE Joint Genome Institute (JGI) 3300020157 Metagenome Analysis spades v. 3.10.1 Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.69 -93.718 441715625 1032247 394 51 659 87 SRX3984563 Unrestricted 29.47 Metagenome 3300007647 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1370B-02 DOE Joint Genome Institute (JGI) 3300007647 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.234 -123.9135 305992418 612951 341 26 544 43 SRX2753609 Unrestricted 8.52 Metagenome 3300037460 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_2000m_C6_10cm15cm DOE Joint Genome Institute (JGI) 3300037460 Metagenome Analysis metaspades v. 3.13.0 Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.9138 -121.159 1450975554 2366527 627 1 1020 1 SRX9141698 Unrestricted 15.81 Metagenome 3300046482 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P34SSC2_191111_f DOE Joint Genome Institute (JGI) 3300046482 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 1072476781 1609004 346 2 516 2 SRX20650490 Unrestricted 10.64 Metagenome 3300070763 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_044-M-20170629-COMP-DNA1 3300070763 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 1417906 4606 13 0 28 0 0.0 Metagenome 3300028510 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 7 Selected contigs with viral hallmark genes 2 Autonomous University of Barcelona 3300028510 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 1236571 1855 0 0 0 0 0.0 Metagenome 3300044606 *Microbiome Permanent Draft Lab-enriched pulp mill granules microbial communities from University of Toronto, Ontario, Canada Lab-enriched pulp mill granules microbial communities from University of Toronto, Ontario, Canada - AG_C Genome Quebec 3300044606 Metagenome Analysis spades v. 3.12.0 Yes Yes emma.master@utoronto.ca Emma Master No Engineered Bioreactor Settled granule Anaerobic Unclassified pulp mill granules 43.6535 -79.3839 407014631 819259 178 0 388 0 0.0 Metagenome 3300037251 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0606S20re DOE Joint Genome Institute (JGI) 3300037251 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8959 -97.0388 137564832 230398 93 0 179 0 SRX8670209 Unrestricted 13.13 Metagenome 3300043498 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 021-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043498 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9569 -106.9874 385292426 1202469 623 33 1218 72 Unrestricted 7.0 Metagenome 3300026802 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-C (SPAdes) DOE Joint Genome Institute (JGI) 3300026802 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 34836368 92819 68 4 120 8 SRX2575558 Unrestricted 0.0 Metagenome 3300007055 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 246515023 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007055 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 43365208 49247 31 0 53 0 0.0 Metagenome 3300069284 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Konza Prairie Bio Station, Kansas, USA - KONZ_043-M-20210721-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069284 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Grasslands Soil Unclassified Terrestrial soil 39.102192 -96.56118 3807142992 8670674 1621 22 3070 35 0.0 Metagenome 3300031840 *Microbiome Finished The variation of viral communities during algal boom from the coastal of Qingdao, China Marine viral communities from the Yellow sea, Qingdao, China - ZQ0614 Beijing Novogene Bioinformatics Technology Co., Ltd 3300031840 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes foodyqw_12@163.com Yang Qingwei No Environmental Aquatic Coastal Marine Unclassified marine 36.062 120.315 284951554 442091 76 1 99 0 0.0 Metagenome 3300027817 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027817 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 846625796 2231983 723 247 1227 430 SRX3311924 Unrestricted 0.0 Metagenome 3300046160 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - MERE-8-26-19 DOE Joint Genome Institute (JGI) 3300046160 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.0513 -120.2541 633302596 1587787 885 45 1449 98 Restricted 0.0 Metagenome 3300025754 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Gongxiaoshe hot spring, China to study Microbial Dark Matter (Phase II) - GXS 20120812B (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025754 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; brian.hedlund@unlv.edu Ramunas Stepanauskas; Brian Hedlund No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring 25.4401 98.4408 7.46 9891396 22234 16 0 20 1 SRX2753916 Unrestricted 0.0 Metagenome 3300025321 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025321 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 1321312951 3155773 807 79 1488 127 SRX2782749 Unrestricted 0.0 Metagenome 3300035053 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B5.1_Sample5.Rodeo1.Well1132 DOE Joint Genome Institute (JGI) 3300035053 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 327111033 542660 278 0 402 0 SRX8354099 Unrestricted 29.15 Metagenome 3300027531 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1568-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027531 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2861 -123.7318 275811806 576316 158 10 231 16 SRX2753759 Unrestricted 0.0 Metagenome 3300002790 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G08K5-12 DOE Joint Genome Institute (JGI) 3300002790 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 65473 232 6 0 14 0 SRX1991293 Unrestricted 0.0 Metagenome 3300022752 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB DOE Joint Genome Institute (JGI) 3300022752 Metagenome Analysis spades v. 3.11.1-check Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.95 1010609790 1798566 434 24 667 58 SRX4664138, SRX4664137, SRX4664139, SRX4664140 Unrestricted 44.9 Metagenome 3300066294 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_013-M-20130709-COMP-DNA1 re-annotation Argonne National Laboratory 3300066294 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 2339365 7941 37 5 84 3 ERX2134031 0.0 Metagenome 3300006734 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG DOE Joint Genome Institute (JGI) 3300006734 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 28.867 -90.467 114992258 240176 64 0 83 0 Unrestricted 0.0 Metagenome 3300011494 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00920 Weill Cornell Medical College 3300011494 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.85 20979679 28252 16 0 19 0 SRX822883 0.0 Metagenome 3300005072 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 64 soap2 Center for Advanced Technologies in Genomics, Sao Paulo University 3300005072 Metagenome Analysis SOAPdenovo2 released per PI's request No Yes joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 382726514 1008595 12 2 49 17 0.0 Metagenome 3300037182 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 S-1-X DOE Joint Genome Institute (JGI) 3300037182 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 479941518 772015 152 1 245 9 SRX8160250 Unrestricted 17.36 Metagenome 3300059743 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1554A-02 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059743 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2871 -123.9424 190437243 390544 135 12 231 17 SRX2753735 Unrestricted 0.0 Metagenome 3300012799 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - DID2878_E24 MG DOE Joint Genome Institute (JGI) 3300012799 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 47006209 57079 42 0 70 0 SRX3564709 Unrestricted 0.0 Metagenome 3300049492 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Washington, USA - columbia_2019_sed_WHONDRS-S19S_0036 DOE Joint Genome Institute (JGI) 3300049492 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 46.372515 -119.271902 258909408 609894 647 31 1245 58 Unrestricted 10.62 Metagenome 3300002074 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S1 DOE Joint Genome Institute (JGI) 3300002074 Metagenome Analysis Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 201171535 597851 633 34 1090 65 SRX1990940 Unrestricted 0.0 Metagenome 2119805011 *Microbiome Permanent Draft Soil microbial communities from FACE and OTC sites in USA Soil microbial communities from sample at Multiple FACE and OTC sites DOE Joint Genome Institute (JGI) 2119805011 Metagenome Analysis Newbler v. 2.5 No Yes kuske@lanl.gov Cheryl Kuske No Environmental Terrestrial Sand Soil Desert Soil 36.766667 -115.95 345080991 913909 14885 427 968 0 0.0 Metagenome 3300030113 *Microbiome Permanent Draft Soil microbial communities from Marcell Experimental Forest, Minnesota, USA Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog702 Georgia Institute of Technology 3300030113 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Terrestrial Unclassified Soil Unclassified Soil 47.50608333 -93.45271667 31455702 59499 34 7 74 10 0.0 Metagenome 3300021165 *Microbiome Permanent Draft Freshwater planktonic and plastic biofilm microbial communities in Lake Erie, USA Freshwater microbial communities from West Central Basin, Lake Erie, Canada - MD2014-0155-0160 University of Michigan 3300021165 Metagenome Analysis Megahit v1.1.1 released by JGI data releasing policy No Yes gumm@umich.edu Jordan Gumm No Environmental Aquatic Lake Freshwater Unclassified lake 42.28 -81.14 160664615 176591 12 1 9 0 0.0 Metagenome 3300012153 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Georgia, USA - TSGA064 MetaG DOE Joint Genome Institute (JGI) 3300012153 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 32.8826 -81.9512 228901784 401268 268 96 393 166 SRX3539698 Unrestricted 0.0 Metagenome 3300005286 *Microbiome Permanent Draft Rice-straw enriched compost microbial community from Berkeley Mesophilic microbial community from rice straw/compost enrichment Sample: eDNA_1 v2 (version 2) DOE Joint Genome Institute (JGI) 3300005286 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes jikhudyakov@lbl.gov, apreddy@ucdavis.edu Jane Khudyakov, Amitha Reddy Yes 24205054 Engineered Solid waste Composting Grass Bioreactor Rice-straw enriched compost 38.5402727 -121.7500776 1032006118 1859725 974 99 1372 189 Unrestricted 0.0 Metagenome 3300011625 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -PQiagenBeadWash928-1 Weill Cornell Medical College 3300011625 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.96 30856640 42670 18 2 22 3 SRX823464 0.0 Metagenome 3300023228 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T75 DOE Joint Genome Institute (JGI) 3300023228 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 129820517 194495 51 9 75 13 SRX4415315, SRX7705690 Unrestricted 0.0 Metagenome 7000000428 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 159571453 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000428 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 1487998 3556 0 0 0 0 SRX023250, SRX023251 0.0 Metagenome 3300056851 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - APS4_19C_T0 DOE Joint Genome Institute (JGI) 3300056851 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 2206570118 2852448 470 134 601 206 Unrestricted 19.66 Metagenome 3300021118 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 29JUN2009 epilimnion DOE Joint Genome Institute (JGI) 3300021118 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 52212725 114622 83 13 130 23 Unrestricted 0.0 Metagenome 2166559008 *Microbiome Permanent Draft Microbial communities from the Atlantic Ocean and human feces from France, grouped together for a comparative study Human fecal microbial communities from France, for comparison studies - Human2 (F2-v 0942) 454 Life Sciences 2166559008 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Host-associated Mammals: Human Large intestine Digestive system Fecal Environmental and host-associated 45.460129 4.495284 10784483 21675 22 0 36 0 0.0 Metagenome 3300025514 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR11Aug_CSWold (SPAdes) DOE Joint Genome Institute (JGI) 3300025514 Metagenome Analysis spades v. 3.11.1 Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 99093335 150933 90 0 135 1 SRX3320867 Unrestricted 0.0 Metagenome 3300039375 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 224_B Beijing Genomics Institute (BGI) 3300039375 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 17303788 16217 12 0 6 0 ERX491005 0.0 Metagenome 3300029902 *Microbiome Permanent Draft Cryoconite microbial communities around the Greenland ice sheet Cryoconite microbial communities from ice sheet in Thule, Greenland - THU-2 DMAC, Technical University of Denmark 3300029902 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Ice Freshwater Cryoconite Cryconite 76.23 -68.15 205299534 327602 99 14 131 28 SRX2579832 0.0 Metagenome 3300029444 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 025_10_29_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029444 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 245996193 359088 299 2 390 4 0.0 Metagenome 3300007109 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 765620695 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007109 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 141045918 188333 108 0 176 0 0.0 Metagenome 3300036586 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C7-3A DOE Joint Genome Institute (JGI) 3300036586 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 229723640 680113 382 12 686 19 SRX8807397 Unrestricted 5.28 Metagenome 3300070622 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_003-O-20190620-COMP-DNA1 3300070622 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 95140157 269980 83 16 193 28 0.0 Metagenome 3300019873 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - U3s1 DOE Joint Genome Institute (JGI) 3300019873 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9203 -106.9486 129201910 291450 188 4 409 13 SRX3944190, SRX3944189 Unrestricted 0.0 Metagenome 3300029222 *Microbiome Permanent Draft Infant fecal microbial communities from Pittsburgh, USA Infant fecal microbial communities from Pittsburgh, USA - NECEvent2014_6_5 Banfield Lab, University of California, Berkeley 3300029222 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant fecal 40.4308 -79.9598 43032251 51839 77 0 97 0 0.0 Metagenome 3300003195 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment Column3K5-90 454 Life Sciences 3300003195 Metagenome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.342219 40.479289 6-8 0 0 0 0 0 0 0.0 Metagenome 3300055453 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.16C.16 SIP fraction DOE Joint Genome Institute (JGI) 3300055453 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 417521771 629149 223 44 334 49 Unrestricted 18.09 Metagenome 3300038835 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample01 King Abdulaziz City for Science and Technology (KACST) 3300038835 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 17.39 40.54 25138366 62990 47 4 71 4 SRX1097575 0.0 Metagenome 3300036985 *Microbiome Permanent Draft Sediment microbial communities from various lakes in Switzerland Sediment microbial communities from Lake Zurich, Zurich, Switzerland - LZ_38 DOE Joint Genome Institute (JGI) 3300036985 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mark.lever@usys.ethz.ch Mark Alexander Lever No Environmental Aquatic Lake Freshwater Sediment sediment 47.2832 8.5937 685786736 1153715 239 5 361 5 SRX8399476 Unrestricted 17.01 Metagenome 3300024311 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Yuk_RepB_8d DOE Joint Genome Institute (JGI) 3300024311 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 175953953 371027 154 15 250 37 SRX4547490 Unrestricted 14.4 Metagenome 7000000248 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human palatine tonsils microbial communities from NIH, USA - visit 2, subject 764042746 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000248 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Tonsils Lymphatic system Palatine/Faucial Human 39.0042816 -77.1012173 13060345 28663 0 0 0 0 SRX024194 0.0 Metagenome 3300056593 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf microbial communities from Olympic Peninsula, Washington, USA - D0_RHK2_5 DOE Joint Genome Institute (JGI) 3300056593 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Alder tree leaf 48.153 -124.211 454661725 530495 120 75 218 110 Unrestricted 0.0 Metagenome 3300002286 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP13-I3 3300002286 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300008070 *Microbiome Permanent Draft Wastewater microbial communities from the hospital sewers Wastewater microbial communities from the hospital sewers in Singapore - Hospital 2 Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300008070 Metagenome Analysis CLC genomics workbench 8 released per JGI data release policy No Yes erinscm@nus.edu.sg Charmaine Ng No Engineered Wastewater Unclassified Unclassified Unclassified wastewater 1.3 103.8 183130469 418086 119 1 271 5 0.0 Metagenome 3300007898 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 765135172 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007898 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 4023829 9175 5 0 10 5 SRX024177 0.0 Metagenome 3300010234 *Microbiome Permanent Draft Freshwater microbial communities enriched with nitrile substrates Freshwater aquifer microbial community from Bangor, North Wales, UK, before enrichment, replicate 2 Fidelity Systems Inc 3300010234 Metagenome Analysis Phred/Phrap/Consed v. 23.0 released per JGI data release policy Yes Yes stepan.toshchakov@gmail.com Stepan Toshchakov No Environmental Aquatic Groundwater Deep subsurface Unclassified freshwater 53.23 -4.13 369021372 953728 273 7 498 13 0.0 Metagenome 3300043553 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield ecozone, Canada - Lake 06-311 Genome Quebec 3300043553 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.690256 -93.717327 911123172 2100938 403 145 714 265 0.0 Metagenome 2088090021 *Microbiome Permanent Draft Rumen microbial communities of musk oxen from Alaska Sample MXFT-1 National Research Council of Canada 2088090021 Metagenome Analysis released per Rekha No Yes robert.forster@agr.gc.ca Robert Forster No Host-associated Mammals Stomach Digestive system Rumen Rumen 64.880776 -147.869984 75338853 205425 262 9 391 0 0.0 Metagenome 3300034780 *Microbiome Permanent Draft Sediment microbiome project Sediment microbial communities from wetland pond in Xixi Nat. Park in Hangzhou, Zhejiang, China - 9 Beijing Genomics Institute (BGI) 3300034780 Metagenome Analysis megahit v. 1.1.3 released by JGI data releasing policy No Yes 17826834892@163.com wang binhao No Environmental Aquatic Pond Freshwater Sediment sediment 30.268 120.04 118259700 167918 76 3 137 4 0.0 Metagenome 3300018079 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1 DOE Joint Genome Institute (JGI) 3300018079 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 1.27 1035125837 2108357 753 10 1442 16 SRX3939455 Unrestricted 5.68 Metagenome 3300038341 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A20_35cm_0M University of Tennessee 3300038341 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 129069650 284764 111 2 238 3 SRX710555 0.0 Metagenome 3300022514 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from deep shales in Oklahoma, United States - hydraulically fractured wells DE_CT_test DOE Joint Genome Institute (JGI) 3300022514 Metagenome Analysis spades v. 3.11.1-check Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back fracking water 35.016 -96.033 38076739 59584 81 0 71 1 SRX4393177 Unrestricted 94.44 Metagenome 3300070624 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_007-M-20200722-COMP-DNA1 3300070624 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 19313089 48897 45 16 72 22 0.0 Metagenome 3300012978 *Microbiome Permanent Draft Hot spring water viral communities from Western Cape, South Africa Hot spring water viral communities from Western Cape, South Africa - Brandvlei University of the Western Cape 3300012978 Metagenome Analysis CLC Genomics released by Olivier Zablocki No Yes olivier.zablo@gmail.com Olivier Zablocki No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring water -33.732496 19.413317 5.7 11115694 19053 3 0 6 0 0.0 Metagenome 3300001081 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 DOE Joint Genome Institute (JGI) 3300001081 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 53568349 153404 128 30 222 56 SRX3312032 Unrestricted 0.0 Metagenome 3300059583 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Biomass microbial communities from acid-phase anaerobic digester in WWTP, Madison, WI, USA - 20211006_SampleC DOE Joint Genome Institute (JGI) 3300059583 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Sludge Anaerobic digester Unclassified Biomass 43.0333 -89.3563 37711438 43787 37 0 42 0 Unrestricted 0.0 Metagenome 3300025512 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR11_8A_Aug (SPAdes) DOE Joint Genome Institute (JGI) 3300025512 Metagenome Analysis spades v. 3.11.1 Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 59354149 92124 53 0 51 0 SRX3320858 Unrestricted 0.0 Metagenome 3300029904 *Microbiome Permanent Draft Fecal microbial communities from lean and fat line chickens in Harbin, China Fecal microbial communities from Lean line chicken in Harbin, China - MGJ1 Inner Mongolia Agricultural University 3300029904 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Birds Large intestine Digestive system Fecal Fecal 45.73 126.73 214940855 326196 321 1 500 2 SRX2066112 0.0 Metagenome 3300039995 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_002-M-20140117-COMP-DNA1 Argonne National Laboratory 3300039995 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 17139518 42503 40 4 67 6 ERX2133932 0.0 Metagenome 3300029442 *Microbiome Permanent Draft Freshwater lake microbial communities from Alinen Mustajarvi, Finland Freshwater lake microbial communities from Alinen Mustajarvi, Finland - AM13 Uppsala University 3300029442 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 61.208142 25.113609 180822743 350703 130 0 245 0 SRX1837106 0.0 Metagenome 3300029224 *Microbiome Permanent Draft North Pond 2017 Crustal fluid microbial communities from North Pond, Mid-Atlantic Ridge, Atlantic Ocean - 1382A 2017 Marine Biological Laboratory 3300029224 Metagenome Analysis IDBA-UD v. 1.1.2 released by JGI data releasing policy No Yes lmseyler@gmail.com Lauren Seyler No Environmental Aquatic Oceanic Marine Crustal Fluids Oceanic crustal fluids 22.75 -46.083 80115594 89564 43 1 68 2 0.0 Metagenome 3300030677 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_3 DOE Joint Genome Institute (JGI) 3300030677 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 1070429718 2275950 289 29 438 46 SRX5357899 Unrestricted 12.57 Metagenome 3300070920 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Alaska, USA - DEJU_045-O-20180621-COMP-DNA1 3300070920 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 5034821 15448 34 14 65 35 0.0 Metagenome 2236876011 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Marine microbial communities from Columbia River, CM, sample from Newport Hydroline, GS310-3LG-Hyp-75m University of South Carolina 2236876011 Metagenome Analysis No Yes mariyasmit@hotmail.com Mariya Smit, Mariya W. Smit No Environmental Aquatic Intertidal zone Marine Unclassified Marine estuarine 44.651 -124.295 83976010 224150 204 205 334 373 0.0 Metagenome 3300070495 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_045-M-20170717-COMP-DNA1 Battelle Memorial Institute 3300070495 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 38.890566 -78.139432 5.93-6.43 2854004 9614 36 1 56 4 0.0 Metagenome 3300027775 *Microbiome Permanent Draft Agricultural soil microbial communities from Utah and Georgia to study Nitrogen management Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027775 Metagenome Analysis spades v. 3.11.1 Yes Yes jeanette.norton@usu.edu Jeanette Norton No Environmental Terrestrial Agricultural land Soil Unclassified Agricultural soil 33.8834 -83.4195 753572609 1730284 774 68 1405 107 SRX2923450 Unrestricted 0.0 Metagenome 3300007988 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-0102 DOE Joint Genome Institute (JGI) 3300007988 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 938679331 1592729 850 45 1367 82 SRX3198639 Unrestricted 0.0 Metagenome 3300024524 *Microbiome Permanent Draft bacteria associated with phytoplankton bloom Marine bacterial communities from Xiamen coast, China - E5 State Key Laboratory of Marine Environmental Sciences, Xiamen University 3300024524 Metagenome Analysis SOAP v. 3.3 released by JGI data releasing policy No Yes kt6mail@gmail.com Kai Tang No Environmental Aquatic Coastal Marine Unclassified marine 24.28 118.2 171476634 417595 96 11 162 17 0.0 Metagenome 3300013627 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100743 University of Pennsylvania 3300013627 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 7069774 13943 16 2 9 3 SRX756107 0.0 Metagenome 3300027262 *Microbiome Permanent Draft Genome and metagenome analysis of marine red algae Porphyra Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex1 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027262 Metagenome Analysis spades v. 3.11.1 Yes Yes Brawley@maine.edu Susan Brawley No Host-associated Algae Unclassified Red algae Unclassified Marine 50.677 -3.24 268819159 418479 132 16 198 25 SRX2999534 Unrestricted 0.0 Metagenome 3300043713 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - Rondonia_Forest_3_B100m DOE Joint Genome Institute (JGI) 3300043713 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.142 -62.882 617673444 1720759 453 9 828 16 Unrestricted 8.02 Metagenome 3300026804 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 2 (SPAdes) DOE Joint Genome Institute (JGI) 3300026804 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 26809480 63157 48 5 84 6 SRX4338202 Unrestricted 0.0 Metagenome 3300036895 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 S3 40-44 DOE Joint Genome Institute (JGI) 3300036895 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3531 19.0476 450909312 708664 130 3 207 13 SRX8138204 Unrestricted 21.47 Metagenome 3300069282 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Santa Rita Experimental Range, Tucson, Arizona, USA - SRER_004-M-20210809-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069282 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Desert Soil Unclassified Terrestrial soil 31.906778 -110.815262 918269569 2247348 1126 18 2212 21 0.0 Metagenome 3300046484 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvCe-C(2) 20-24 DOE Joint Genome Institute (JGI) 3300046484 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0434 863556003 1332998 302 3 492 5 Restricted 12.75 Metagenome 3300014702 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00368 Weill Cornell Medical College 3300014702 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.73 -74.0 52253347 88473 24 2 48 3 SRX822339 0.0 Metagenome 3300013291 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Aquatic prokaryotic and eukaryotic communities from a canal in New York, USA: aquatic canal water -GCSS-07 Weill Cornell Medical College 3300013291 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Unclassified Canal Unclassified Aquatic canal 40.67 -73.99 39183659 113987 86 17 172 30 SRX823481 0.0 Metagenome 3300055077 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_84-s20 day 154 DOE Joint Genome Institute (JGI) 3300055077 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1204766476 1745372 234 178 330 198 Unrestricted 26.08 Metagenome 3300047386 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_160302.NP1 DOE Joint Genome Institute (JGI) 3300047386 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 443095228 891160 289 46 470 102 Unrestricted 11.52 Metagenome 3300022754 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R6 Version 2 University of New South Wales 3300022754 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 91123492 164080 51 2 76 3 0.0 Metagenome 3300022321 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1BM1 JM22 AGRF 3300022321 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 25363221 44290 14 1 28 1 0.0 Metagenome 3300032053 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16 DOE Joint Genome Institute (JGI) 3300032053 Metagenome Analysis spades v. 3.12.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.508 -110.3268 4718691099 9757974 2101 28 3269 60 SRX6412884 Unrestricted 16.54 Metagenome 3300028277 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_120m DOE Joint Genome Institute (JGI) 3300028277 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified marine 48.6 -123.5 372473631 682274 233 5 345 8 SRX5244626 Unrestricted 32.3 Metagenome 3300005790 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS906_Marker113_DNA Marine Biological Laboratory 3300005790 Metagenome Analysis Ray v. 2.3.1, minimum contig length 1kb released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com; randerson@carleton.edu; elks@mit.edu Caroline Fortunato, Caroline Fortunato; Rika Anderson; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.92274 -129.988104 32784485 41277 4 1 1 5 0.0 Metagenome 3300001197 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes from Sediment core from a heavy oil reservoir,Alberta Canada Inniskillen 614.3 McGill University 3300001197 Metagenome Analysis released per user request No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Environmental Terrestrial Sediment Oil reservoir Unclassified Hydrocarbon resource environments 56.04 -118.13 89229498 204944 69 0 151 6 0.0 Metagenome 3300025752 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MMD3.0 (SPAdes) DOE Joint Genome Institute (JGI) 3300025752 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 40.83194 2.44806 2864171 6865 7 21 12 25 SRX1981963 Unrestricted 0.0 Metagenome 3300037184 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 C-1-X1 DOE Joint Genome Institute (JGI) 3300037184 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3544 19.048 601821153 994466 224 5 360 3 SRX8162345 Unrestricted 16.17 Metagenome 3300049494 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC11 DOE Joint Genome Institute (JGI) 3300049494 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 72820372 177198 206 5 430 4 Unrestricted 15.68 Metagenome 3300003476 *Microbiome Permanent Draft Estuary microbial community from Gulf of Naples, Italy Estuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 2 Stazione Zoologica Anton Dohrn 3300003476 Metagenome Analysis released per JGI data releasing policy No Yes stefan.thiele@szn.it Stefan Thiele Yes 28063827 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Estuarine 40.725 14.39983 8.1 266493739 613018 352 3 658 4 ERX1032432 0.0 Metagenome 3300049273 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA24 DOE Joint Genome Institute (JGI) 3300049273 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 335449616 748444 299 4 553 8 Unrestricted 8.55 Metagenome 3300039885 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_033-O-20170801-COMP-DNA1 Battelle Memorial Institute 3300039885 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 23395106 66639 75 12 135 27 0.0 Metagenome 3300066292 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Taiga, AK, USA - HEAL_047-O-20160726-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066292 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.87569 -149.21334 7691640 24579 47 1 72 8 0.0 Metagenome 3300011492 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00901 Weill Cornell Medical College 3300011492 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.74 -73.91 17497764 28124 10 0 15 0 SRX822864 0.0 Metagenome 3300005074 *Microbiome Permanent Draft Stylissa massa endosymbiont microbial communities from Guam Marine benthic sponge Stylissa massa associated microbial communities from Guam, USA University of Utah 3300005074 Metagenome Analysis CLC released per JGI data release policy No Yes abrahim.eg@gmail.com, spodell@ucsd.edu Abrahim El Gamal, Sheila Podell No Host-associated Porifera Unclassified Unclassified Unclassified Marine benthic sponge Stylissa massa associated 13.4388546 144.8224773 548267488 1084042 100 39 161 67 0.0 Metagenome 3300050361 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Rock endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - YNP_Endolithic_2 DOE Joint Genome Institute (JGI) 3300050361 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rock 44.7986 -110.7207 276391897 381728 122 14 157 15 Unrestricted 321.52 Metagenome 3300031977 *Microbiome Finished The variation of viral communities during algal boom from the coastal of Qingdao, China Marine viral communities from the Yellow sea, Qingdao, China - WS0831 Beijing Novogene Bioinformatics Technology Co., Ltd 3300031977 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes foodyqw_12@163.com Yang Qingwei No Environmental Aquatic Coastal Marine Unclassified marine 36.062 120.38 427558470 735311 105 2 159 2 0.0 Metagenome 3300046736 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 soil DOE Joint Genome Institute (JGI) 3300046736 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.58807 -123.194072 6.85 624941455 1146950 337 23 646 34 Unrestricted 16.61 Metagenome 3300009839 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG DOE Joint Genome Institute (JGI) 3300009839 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes loy@microbial-ecology.net; Michael.Pester@dsmz.de Alexander Loy; Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.1318 11.881 1364179369 2425143 453 7 712 8 Unrestricted 0.0 Metagenome 3300005577 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 DOE Joint Genome Institute (JGI) 3300005577 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 5769306559 16467670 4195 348 6818 691 SRX2784949 Unrestricted 0.0 Metagenome 3300013983 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00934 Weill Cornell Medical College 3300013983 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.93 8346595 14898 8 0 24 0 SRX822897 0.0 Metagenome 3300043472 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 315-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043472 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9095 -107.0284 625014101 1574072 419 68 737 115 Unrestricted 7.11 Metagenome 3300042076 *Microbiome Permanent Draft Mollusc gills microbial communities from various hydrothermal vent in Atlantic Ocean Mollusc gills microbial communities from Clueless hydrothermal vent, Atlantic Ocean - BspSym_Cl_5_11-6 Max Planck Institute for Marine Microbiology 3300042076 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills -4.803266 -12.3718 172954511 206260 2 1 4 8 ERX3367181 0.0 Metagenome 3300060370 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210605_09_21 DOE Joint Genome Institute (JGI) 3300060370 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 907437471 1329732 334 151 409 240 Unrestricted 26.17 Metagenome 3300002699 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes from Oil sands tailings Tailings Pond 5 - 2012TP5 McGill University 3300002699 Metagenome Analysis released per JGI data release policy No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey No Engineered Built environment Petrochemical Tailings pond Wastewater Hydrocarbon resource environments 57.02 -111.55 7.5 0 0 0 0 0 0 0.0 Metagenome 3300053722 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 endosphere DOE Joint Genome Institute (JGI) 3300053722 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121521 -123.27199 404548031 502737 88 76 132 120 Unrestricted 0.0 Metagenome 3300038804 *Microbiome Permanent Draft Activated sludge microbial communities from various WWTPs in Denmark Activated sludge microbial communities from WWTP in Aalborg West, Denmark - AAW-4-2011 Aalborg University 3300038804 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified Activated sludge 57.04951 9.864788 904475228 1971878 144 0 177 0 0.0 Metagenome 3300050190 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim2 90-94 DOE Joint Genome Institute (JGI) 3300050190 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.353634 19.04734 227739947 363323 123 5 176 6 Restricted 23.04 Metagenome 3300028895 *Microbiome Permanent Draft Deep ocean water column microbial communities from Yap Trench, western Pacific Ocean Seawater microbial communities from Yap Trench, western Pacific Ocean - 37I-Yap-CTD02-3000m 2000bp_Newsun Novogene 3300028895 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Ocean trench Marine Unclassified seawater 9.87 138.5 473201393 503559 179 8 208 9 0.0 Metagenome 3300020539 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 13SEP2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020539 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 117262361 251620 105 18 169 20 SRX1989919 Unrestricted 0.0 Metagenome 3300044452 *Microbiome Permanent Draft Simulated microbial communities of Trichodesmium and heterotrophic bacteria from Gulf of Aqaba, Eilat, Israel Simulated microbial communities of Trichodesmium and heterotrophic bacteria from Gulf of Aqaba, Eilat, Israel - Tfinal+54FeOx-3 DOE Joint Genome Institute (JGI) 3300044452 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes yeala.shaked@mail.huji.ac.il Yeala Shaked No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified simulated 29.501 34.917 400611704 500414 154 22 200 35 Unrestricted 207.01 Metagenome 3300005098 *Microbiome Permanent Draft Hydrothermal sediment in Guaymas Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 8, 4-6cmbsf Beijing Genomics Institute (BGI) 3300005098 Metagenome Analysis IDBA-UD v. 1.1.1 released per JGI data release policy No Yes asdfeng131@sjtu.edu.cn, asdfeng188@gmail.com Feng Xiaoyuan No Environmental Aquatic Unclassified Marine Unclassified marine 202792850 212196 107 0 127 0 0.0 Metagenome 3300012219 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100259 University of Pennsylvania 3300012219 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 7586992 20948 22 1 21 0 SRX756642 0.0 Metagenome 3300049478 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Wisconsin, USA - blackearthcreek_2019_sed_WHONDRS-S19S_0061 DOE Joint Genome Institute (JGI) 3300049478 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 43.1095 -89.6407 801711920 1602088 799 2 1463 1 Unrestricted 11.92 Metagenome 3300009520 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG DOE Joint Genome Institute (JGI) 3300009520 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes loy@microbial-ecology.net; Michael.Pester@dsmz.de Alexander Loy; Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.1318 11.881 592424706 1150233 248 4 418 5 Unrestricted 0.0 Metagenome 3300012884 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 DOE Joint Genome Institute (JGI) 3300012884 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Soil Agricultural land soil 43.3 -89.38 229632528 599827 509 14 1010 23 SRX3899637, SRX3899636 Unrestricted 0.0 Metagenome 3300029536 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P032V6 Beijing Genomics Institute (BGI) 3300029536 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 129791694 164723 119 0 162 0 0.0 Metagenome 3300002210 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC3b day 78 University of Sao Paulo, Virginia Bioinformatics Institute 3300002210 Metagenome Analysis SoapDeNovo released per PI's request No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 149611086 424234 9 3 34 18 0.0 Metagenome 3300000836 *Microbiome Draft Passalidae beetle gut microbial communities from Costa Rica Passalidae beetle gut microbial communities from Costa Rica - Adult (4MA+4BA+4MSA) v2 (version 2) DOE Joint Genome Institute (JGI) 3300000836 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes davidhs@lsi.umich.edu, davidhs@umich.edu David Sherman No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Passalidae beetle gut 10.207151 -84.007673 142922252 425036 35 11 67 12 Unrestricted 0.0 Metagenome 3300059728 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059728 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 681700267 1538295 666 84 1106 145 SRX2753550 Unrestricted 0.0 Metagenome 3300017747 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N DOE Joint Genome Institute (JGI) 3300017747 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.2382 -86.2805 365886210 881603 5 1 6 2 Unrestricted 0.0 Metagenome 3300028746 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1 DOE Joint Genome Institute (JGI) 3300028746 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 933155091 2057779 419 112 668 191 SRX5355874 Unrestricted 0.0 Metagenome 2084038006 *Microbiome Permanent Draft Acid mine drainage microbial communities from Yunfu, Dabaoshan, and Foukou, China, of pyrites, lead-zinc tailings, and polymetallic ore Acid Mine Drainage metagenome from Fankou Sun Yat-Sen University 2084038006 Metagenome Analysis released per JGI data release policy No Yes lishjin@student.sysu.edu.cn Sheng-Jin Li No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 23.1333 113.2667 1.8 10234757 17809 3 0 7 0 0.0 Metagenome 3300028985 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 272_4M Beijing Genomics Institute (BGI) 3300028985 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 49424788 50674 30 0 33 0 ERX491052 0.0 Metagenome 3300037591 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from Cariaco Basin, Caribbean Sea - 27_WHOI_OMZ (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037591 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 10.847 -65.114 87718700 122795 44 0 58 0 SRX3197359, SRX3197358 Unrestricted 0.0 Metagenome 3300009175 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG DOE Joint Genome Institute (JGI) 3300009175 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jkjarett@lbl.gov, rstepanauskas@bigelow.org; sari.peura@slu.se; eaeloefadrosh@lbl.gov; jkjarett@lbl.gov Jessica Jarett, Ramunas Stepanauskas; Sari Peura; Emiley Eloe-Fadrosh; Jessica Jarett No Environmental Aquatic Lake Freshwater Unclassified freshwater lake hypolimnion 61.5637 22.044 1536980776 2419268 1204 29 1995 35 SRX2839455 Unrestricted 0.0 Metagenome 3300014229 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 266_D2_2014-9-26 San Diego State University 3300014229 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 448410 1775 6 5 4 11 0.0 Metagenome 3300008212 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius sp. 1 HERON ISLAND DOE Joint Genome Institute (JGI) 3300008212 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 236394546 353775 4 1 4 6 SRX2711968 Unrestricted 0.0 Metagenome 3300011230 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01267 Weill Cornell Medical College 3300011230 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.57 -73.97 45575905 68875 22 0 35 0 SRX823217 0.0 Metagenome 3300007874 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 159713063 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007874 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 4145945 4982 6 0 5 5 0.0 Metagenome 3300037309 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from Nevada, United States - King's Pool (KP_S3) DOE Joint Genome Institute (JGI) 3300037309 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified Desert spring 36.4015 -116.2738 7.46 1399173358 1923214 363 82 557 137 SRX9167017 Unrestricted 31.45 Metagenome 3300006093 *Microbiome Finished Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 - sample NBP189 Major University, Chile 3300006093 Metagenome Analysis IDBA-UD released by Amy Chen No Yes oulloa@udec.cl Osvaldo Ulloa Yes 29575531 Environmental Aquatic Oceanic Marine Unclassified Marine -13.71 -81.389 158823022 342414 133 4 182 7 0.0 Metagenome 3300042151 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P17_D5 (version 2) DOE Joint Genome Institute (JGI) 3300042151 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 249052359 360860 84 0 139 0 SRX10165516, SRX10165517 Unrestricted 0.0 Metagenome 3300000101 *Microbiome Draft Marine microbial communities from Delaware Coast Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010 DOE Joint Genome Institute (JGI) 3300000101 Metagenome Analysis released based on JGI ITS Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Marine 38.84917 -75.1076 647909234 1375242 282 32 499 39 Unrestricted 0.0 Metagenome 3300014909 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -PAB001 Weill Cornell Medical College 3300014909 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -74.01 23482339 44961 29 2 35 6 SRX823429 0.0 Metagenome 3300024236 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 67D DOE Joint Genome Institute (JGI) 3300024236 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 268523865 593854 185 21 272 40 SRX4472686 Unrestricted 15.83 Metagenome 3300025685 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025685 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 27054497, 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 457766208 891668 301 57 407 92 SRX2999666 Unrestricted 0.0 Metagenome 3300033395 *Microbiome Permanent Draft Metagenomic SGS 2x251 Riparian soil bacterial communities from Cottonwood Creek Park, Encinitas, CA, USA - R10 Illumina 3300033395 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Riparian soil Soil 33.051604 -117.289363 449535769 1642968 270 27 645 44 0.0 Metagenome 7000000443 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765701615 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000443 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 133639245 240205 0 0 0 0 0.0 Metagenome 3300034088 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B5A4.1 DOE Joint Genome Institute (JGI) 3300034088 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 570976416 1511649 751 3 1336 4 SRX7658956 Unrestricted 7.32 Metagenome 3300004220 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 87_LOW11 DOE Joint Genome Institute (JGI) 3300004220 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 48088219 104373 49 4 71 4 SRX2721164 Unrestricted 0.0 Metagenome 3300026341 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-A DOE Joint Genome Institute (JGI) 3300026341 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 97059816 257270 196 24 364 28 SRX4801765 Unrestricted 10.35 Metagenome 3300050326 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_94 DOE Joint Genome Institute (JGI) 3300050326 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -76.91 160.935 557984065 836015 97 18 120 32 SRX18236986 Restricted 28.93 Metagenome 3300023243 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #3 DOE Joint Genome Institute (JGI) 3300023243 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 205826389 371563 59 7 83 17 SRX4396195 Unrestricted 18.45 Metagenome 3300047310 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 soil DOE Joint Genome Institute (JGI) 3300047310 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121462 -123.270441 5.14 966499676 1483543 290 23 484 24 Unrestricted 12.53 Metagenome 3300001239 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Tailings pond microbial communities from Northern Alberta - Syncrude Mildred Lake Settling Basin McGill University 3300001239 Metagenome Analysis released by AMY No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 57.01116 -111.6 8.69 342840739 768174 354 13 724 17 0.0 Metagenome 3300000313 *Microbiome Draft Wetland microbial communities from Twitchell Island in the Sacramento Delta Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site B1 Cattail DOE Joint Genome Institute (JGI) 3300000313 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes stringe@lbl.gov, sgtringe@lbl.gov Susannah Tringe Yes 25991679 Environmental Aquatic Wetlands Marine Sediment Wetland 38.10726 -121.648538 291270262 747866 473 10 904 30 Unrestricted 0.0 Metagenome 3300020485 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 03JUL2008 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020485 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.099444 -89.404444 36163084 75277 57 11 89 20 SRX3310937 Unrestricted 0.0 Metagenome 3300025959 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025959 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.198971 -122.026955 178711754 368252 179 0 291 0 SRX7142966 Unrestricted 0.0 Metagenome 3300001725 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP-82 DOE Joint Genome Institute (JGI) 3300001725 Metagenome Analysis Yes Yes mbsulli@gmail.com, sacinas@icm.csic.es; mbsulli@gmail.com Matthew Sullivan, Silvia G. Acinas; Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -25.4941 -179.5286 71347098 169519 81 0 142 3 SRX4915164 Unrestricted 0.0 Metagenome 3300040805 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Salins du Lion, Vitrolles, France - D98a Genopole Toulouse Midi-Pyrenees 3300040805 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.45 5.2264 206652800 407840 246 12 454 21 0.0 Metagenome 3300002855 *Microbiome Permanent Draft Lignocellulose-degrading enriched microbial communities from Concordia, Entre Rios, Argentina CMC-Pine-T1-ill-as INDEAR Instituto de Agrobiotecnologia Rosario 3300002855 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes reinert.md@gmail.com, marina.reinert@indear.com Marina Reinert No Engineered Lab enrichment Aerobic media Defined media Unclassified Lignocellulose-degrading enriched -31.372253 -58.116672 551011665 811157 529 1 938 0 0.0 Metagenome 3300033576 *Microbiome Permanent Draft Metagenomic SGS 2x251 Staggered mock microbial community from ATCC, Manassa, VA, USA - ATCC4 Illumina 3300033576 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Laboratory 38.752303 -77.519989 28723005 34269 14 0 19 0 0.0 Metagenome 3300042282 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA MBR feed microbial communities from membrane bioreactor in Denver, Colorado, USA - FD_D278 DOE Joint Genome Institute (JGI) 3300042282 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Wastewater Mine water Industrial wastewater Produced water MBR feed 39.7823 -104.9101 388504961 598496 360 1 489 1 Unrestricted 25.96 Metagenome 3300045819 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - P3-R2-A DOE Joint Genome Institute (JGI) 3300045819 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.0477 355581204 666049 160 8 232 15 Unrestricted 7.94 Metagenome 3300012994 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Fungus gardens microbial communities from leaf cutter ant in Botucatu, State of Sao Paulo, Brazil - Atta capiguara ACBM1 DOE Joint Genome Institute (JGI) 3300012994 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Fungi Unclassified Mycelium Unclassified fungus garden -22.908 -48.308 148286676 274865 841 21 842 27 Unrestricted 198.89 Metagenome 3300045284 *Microbiome Permanent Draft Forest soil microbial communities from boreal-temperate forests in Minnesota, USA Forest soil microbial communities from Cloquet Forestry Center, Minnesota, USA - Cloquet AMB WD E5 DOE Joint Genome Institute (JGI) 3300045284 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pankaj.trivedi@colostate.edu Pankaj Trivedi No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 46.31 -92.3 1061766814 1805165 382 9 675 17 Unrestricted 14.55 Metagenome 3300009083 *Microbiome Permanent Draft Freshwater microbial communities from lake liftoff mats and glacier meltwater in Antarctica Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-04 (megahit assembly) DOE Joint Genome Institute (JGI) 3300009083 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes slonczewski@kenyon.edu Joan Slonczewski No Environmental Aquatic Ice Freshwater Liftoff microbial mat Freshwater -77.605 163.163 2919217925 5077351 1570 58 2297 84 SRX2522268 Unrestricted 17.68 Metagenome 2035918001 *Microbiome Permanent Draft Activated sludge microbial communities from Commune de Morges, Switzerland Activated sludge microbial communities from Commune de Morges, Switzerland - plasmid pool Visp-2009 (Newbler) DOE Joint Genome Institute (JGI) 2035918001 Metagenome Analysis Newbler released based on JGI ITS No Yes sgtringe@lbl.gov, janroelof.vandermeer@unil.ch Susannah Tringe, Jan Roelof van der Meer Yes 23407308 Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Activated sludge Wastewater plasmid pools 46.30044 7.8594 6.8-7.2 12200307 23869 8 0 19 0 Unrestricted 0.0 Metagenome 3300014735 *Microbiome Permanent Draft Wastewater microbial communities from bioreactor in tannery plant in Nantong, China Wastewater microbial communities from bioreactor in tannery plant in Nantong, China - SA Korea Maritime University (KMU) 3300014735 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Nitrogen removal Nutrient removal Unclassified Wastewater 31.919439 120.92611 17148794 47867 27 1 49 3 0.0 Metagenome 3300035108 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 10_7.5_N_13_1 DOE Joint Genome Institute (JGI) 3300035108 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1863 -2.2145 1061352008 2590212 244 0 385 0 SRX8233766 Unrestricted 7.61 Metagenome 3300027993 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S199-509C-5 DOE Joint Genome Institute (JGI) 3300027993 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 138837693 391813 377 28 774 36 SRX5338614, SRX5338613 Unrestricted 0.0 Metagenome 3300000642 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 17SEP2007 epilimnion DOE Joint Genome Institute (JGI) 3300000642 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300003359 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A3w-11 DOE Joint Genome Institute (JGI) 3300003359 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 887018 3022 31 0 65 0 SRX2576219 Unrestricted 0.0 Metagenome 3300036524 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C6-9A DOE Joint Genome Institute (JGI) 3300036524 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 181061550 542053 343 4 603 18 SRX8806941 Unrestricted 5.11 Metagenome 3300021376 *Microbiome Permanent Draft Freshwater microbial communities from Lake Tanganyika, Tanzania Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015050 Kigoma 12 surface DOE Joint Genome Institute (JGI) 3300021376 Metagenome Analysis spades v. 3.11.1-check Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater lake -4.8369 29.6087 1466436439 2446934 427 108 710 161 SRX4821667 Unrestricted 41.73 Metagenome 3300070365 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dead Lake, Alabama, USA - DELA_003-M-20190626-COMP-DNA1 3300070365 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 21378185 61168 55 2 128 2 0.0 Metagenome 3300007361 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 158337416 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007361 Metagenome Analysis SPADES 3.6.1 released per Rekha Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 173118880 229956 141 0 239 0 0.0 Metagenome 3300014245 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 177_L2_2014-5-5 San Diego State University 3300014245 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 2248268 7290 24 11 46 31 0.0 Metagenome 3300070559 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_002-O-20190806-COMP-DNA1 Battelle Memorial Institute 3300070559 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 68.627943 -149.347229 5.38-5.84 16427175 47576 43 0 92 1 0.0 Metagenome 3300013350 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100667 University of Pennsylvania 3300013350 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 41092324 86238 29 0 24 0 SRX756427 0.0 Metagenome 3300024895 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 1_LOW4 (SPAdes) DOE Joint Genome Institute (JGI) 3300024895 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 164133483 324524 76 0 139 0 SRX2719552 Unrestricted 0.0 Metagenome 3300003518 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS861_Marker113_DNA 3300003518 Metagenome Analysis CLC genomics workbench released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.923 -129.988104 113071139 255851 93 9 242 20 0.0 Metagenome 2077657014 *Microbiome Permanent Draft Marine sediment archaeal communities from Santa Barbara Basin, CA, that are anaerobic and methane-oxidizing Marine sediment archaeal communities from Santa Barbara Basin, CA, that are methane-oxidizing, sample 6-9 cm DOE Joint Genome Institute (JGI) 2077657014 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Sediment Marine sediment 34.21 -119.5 92521799 194477 0 0 0 0 Unrestricted 0.0 Metagenome 3300002222 *Microbiome Permanent Draft Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran, Adriatic Sea Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge pinacoderm, lysed by bead beating DOE Joint Genome Institute (JGI) 3300002222 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes ute.hentschel@uni-wuerzburg.de Ute Hentschel Humeida No Host-associated Porifera Unclassified Sponge Unclassified Host-associated 45.5099 13.56 202598248 367893 148 3 195 5 SRX3323213 Unrestricted 0.0 Metagenome 3300049364 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC29 DOE Joint Genome Institute (JGI) 3300049364 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 108541048 269718 191 5 420 9 Unrestricted 33.31 Metagenome 3300020812 *Microbiome Permanent Draft Metagenomes from anaerobic digester of solid waste Anaerobic digester digestate microbial community, University of Toronto, Ontario, Canada - DG074 megahit University of Toronto 3300020812 Metagenome Analysis megahit v. 1.1.1 Yes Yes elizabeth.edwards@utoronto.ca; camillaln@gmail.com Elizabeth A. Edwards; Camilla Nesb? No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic digester digestate 43.5479 -79.6609 726434840 1145276 444 4 726 3 0.0 Metagenome 3300005224 *Microbiome Finished Hot spring microbial communities from Lasundra Hot Springs, Gujarat, India Hot spring microbial communities from Lasundra Hot Springs, Gujarat, India Anand Agricultural University 3300005224 Metagenome Analysis not assembled released per JGI data release policy No Yes raj252000@gmail.com Rajesh Patel No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 22.9250049 70.9679505 6.5 0 0 0 0 0 0 0.0 Metagenome 3300050491 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation DOE Joint Genome Institute (JGI) 3300050491 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Host-associated Plants Endosphere Roots Unclassified Populus endosphere 35.8443 -83.9607 2005981805 4759451 1601 113 2875 175 SRX2748468 0.0 Metagenome 3300027039 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 14 (SPAdes) DOE Joint Genome Institute (JGI) 3300027039 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 128418550 309131 113 0 206 1 SRX4338633 Unrestricted 0.0 Metagenome 3300038716 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample31 King Abdulaziz City for Science and Technology (KACST) 3300038716 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 23.36 37.3 19202456 48330 31 0 78 0 SRX1097599 0.0 Metagenome 3300008604 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159551223 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008604 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 60930174 119380 49 0 102 0 0.0 Metagenome 7000000030 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 158479027 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000030 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 140007 316 0 0 0 0 SRX024519, SRX024520 0.0 Metagenome 3300011740 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00347 Weill Cornell Medical College 3300011740 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.64 -74.06 35109904 54380 14 3 21 3 SRX822319 0.0 Metagenome 3300011362 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01001 Weill Cornell Medical College 3300011362 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.59 -73.8 10412051 12670 12 0 18 0 SRX822963 0.0 Metagenome 3300049023 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - E16_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049023 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 517275423 1163937 634 23 1169 35 Unrestricted 0.0 Metagenome 3300039166 *Microbiome Permanent Draft Organic and conventional farm associated microbial communities from Canada and USA Wastewater microbial communities from conventional feedlot in Alberta, Canada - WW125 Colorado State University 3300039166 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 50.34 -113.77 58943762 121361 106 0 165 0 0.0 Metagenome 3300039639 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_059-O-20160719-COMP-DNA1 Battelle Memorial Institute 3300039639 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 67604688 173598 115 37 191 77 0.0 Metagenome 3300002902 *Microbiome Permanent Draft Soil microbial communities from Kansas (Konza Prairie Natural Area and Manhattan, Kansas, USA) Soil microbial communities from Manhattan, Kansas, USA - Sample 400um Nextera DOE Joint Genome Institute (JGI) 3300002902 Metagenome Analysis revert back to private per Christa Yes Yes elbrodie@lbl.gov, ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Unclassified Soil Unclassified Soil 39.214 -96.5852 42399287 139492 149 2 239 4 Unrestricted 0.0 Metagenome 3300041785 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - TR_29_wk_2 DOE Joint Genome Institute (JGI) 3300041785 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9726 -107.062 72191812 219229 192 11 355 21 SRX14808258 Unrestricted 7.42 Metagenome 3300002444 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP09-I2 3300002444 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300040952 *Microbiome Permanent Draft Sediment microbial communities from Haima cold seep, South China Sea, China Sediment microbial communities from Haima cold seep, South China Sea, China - SY70.5.8_HM2M Magigene technology co., LTD. 3300040952 Metagenome Analysis IDBA v. 1.1.3 released by JGI data releasing policy No Yes sulei@tongji.edu.cn Lei Su No Environmental Aquatic Cold seeps Marine Sediment Sediment 16.729163 110.473065 .14 to .16 533165002 626582 180 2 228 3 0.0 Metagenome 3300009512 *Microbiome Permanent Draft Marine microbial communities from western Arctic Ocean Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 DOE Joint Genome Institute (JGI) 3300009512 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh Yes 30271971 Environmental Aquatic Oceanic Marine Unclassified Marine 79.2466 -150.0613 1495240833 3054582 666 264 1257 407 SRX2997526 Unrestricted 0.0 Metagenome 3300035436 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_1_14_6 mgh University of Alberta 3300035436 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 85382576 109946 36 0 56 0 0.0 Metagenome 3300001749 *Microbiome Permanent Draft Marine microbial communities from the Santa Barbara Channel oil seeps Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 3 DOE Joint Genome Institute (JGI) 3300001749 Metagenome Analysis Yes Yes mhess@lbl.gov, mhess@ucdavis.edu Matthias Hess Yes 24958360, 25197496 Environmental Aquatic Oil seeps Marine Unclassified Marine 34.39225 -119.845662 437751882 843676 425 8 764 8 SRX559946 Unrestricted 0.0 Metagenome 3300005442 *Microbiome Draft Switchgrass adapted compost microbial communities from mini bioreactor at UC Davis Thermophilic enriched microbial communities from mini bioreactor at UC Davis - Sample SG0.5JP960 (454-Illumina assembly) - version 2 (version 2) DOE Joint Genome Institute (JGI) 3300005442 Metagenome Analysis Unkonwn released based on JGI ITS No Yes swsinger@lbl.gov, JMGladden@lbl.gov; SWSinger@lbl.gov Steven Willian Singer, John Gladden; Steven W. Singer Yes 23894306 Engineered Solid waste Composting Grass Bioreactor Switchgrass adapted compost 38.546 -121.7533 49584160 62968 55 0 58 2 Unrestricted 0.0 Metagenome 3300005904 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_404 DOE Joint Genome Institute (JGI) 3300005904 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 419974109 1366215 512 9 967 13 SRX2564679, SRX2581041 Unrestricted 0.0 Metagenome 3300028027 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC DOE Joint Genome Institute (JGI) 3300028027 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified deep subsurface sediment 39.6017 -79.9761 669804605 1181080 178 69 299 123 SRX5246442 Unrestricted 16.05 Metagenome 3300003437 *Microbiome Permanent Draft Marine microbial communities from the San Pedro channel, Pacific Ocean in the San Pedro Ocean Time-series (SPOT) study Marine microbial communities from the San Pedro channel, Pacific Ocean in the San Pedro Ocean Time-series (SPOT) study- Sample 1 3300003437 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes aparada@usc.edu alma parada No Environmental Aquatic Oceanic Marine Aphotic zone Marine 33.55 -118.42 15266207 15293 3 0 2 0 0.0 Metagenome 3300004212 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG02_land_8/20/14_3.00 DOE Joint Genome Institute (JGI) 3300004212 Metagenome Analysis MEGAHIT v. 0.2.0 revert back to private per Christa Yes Yes jbanfield@berkeley.edu, jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield, Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 966993198 2286000 1643 29 2714 74 SRX3348123 Unrestricted 0.0 Metagenome 3300045532 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Iowa River, Iowa, USA - NASQAN2011_250 DOE Joint Genome Institute (JGI) 3300045532 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 41.178 -91.182 384968407 1094922 698 124 1083 210 Unrestricted 0.0 Metagenome 3300032047 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 34915 DOE Joint Genome Institute (JGI) 3300032047 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.7468 -122.0193 1646482173 3516519 889 283 1360 505 SRX6423972 Unrestricted 15.46 Metagenome 3300047322 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere DOE Joint Genome Institute (JGI) 3300047322 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1209 -123.2709 1373654852 2173992 384 137 653 154 Unrestricted 14.35 Metagenome 3300041946 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - C_29_wk_4 DOE Joint Genome Institute (JGI) 3300041946 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9346 -107.011 240847558 759888 385 18 733 32 SRX14808644 Unrestricted 7.11 Metagenome 3300015609 *Microbiome Permanent Draft Wastewater microbial communities from the domestic sewers Wastewater microbial communities from domestic sewers in Singapore - Site C Nov Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300015609 Metagenome Analysis CLC workbench released by JGI data releasing policy No Yes erinscm@nus.edu.sg Charmaine Ng No Engineered Wastewater Unclassified Sewage Unclassified Wastewater 1.28362 103.859825 202114884 252531 25 6 36 5 0.0 Metagenome 3300024985 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 3_LOW4 (SPAdes) DOE Joint Genome Institute (JGI) 3300024985 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 153600074 304632 83 0 139 0 SRX2719626 Unrestricted 0.0 Metagenome 3300004778 *Microbiome Permanent Draft Wetland sediment microbial communities from St. Louis River estuary, Michigan under dissolved organic matter induced mercury methylation Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh DOE Joint Genome Institute (JGI) 3300004778 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes diana.nemergut@duke.edu, diana.nemergut@duke.edu.deleted Diana Nemergut No Environmental Aquatic Wetlands Freshwater Sediment Wetland sediment 46.6972164 -92.3279105 1664908361 4627704 1227 17 2840 47 SRX2775467 Unrestricted 0.0 Metagenome 3300042534 *Microbiome Permanent Draft Sediment microbial communities from various environments and locations in Europe Sediment microbial communities from Baltic Sea, Sweden - H5D5S (IMG v5.0) DOE Joint Genome Institute (JGI) 3300042534 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes o.eyice@qmul.ac.uk Ozge Eyice No Environmental Aquatic Sediment Marine Unclassified Sediment 59.0386 17.7277 685617291 1574443 555 1 933 4 Unrestricted 8.42 Metagenome 3300047403 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Amazon River, Macapa, Brazil - ROCA179 DOE Joint Genome Institute (JGI) 3300047403 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater -0.0838 -51.0514 329598651 697507 294 24 498 37 Unrestricted 12.82 Metagenome 3300026780 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in West Virginia, USA - MSEEL M_DM5 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026780 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 39.602 -79.976 25831004 79492 83 2 135 3 SRX2996525 Unrestricted 0.0 Metagenome 3300054570 *Microbiome Permanent Draft Soil microbial communities from pasture in Hopland Research and Extension Center, CA, USA Soil viral communities from pasture in Hopland Research and Extension Center, CA, USA - T3-H218O+P-C library kit 1SPlus DOE Joint Genome Institute (JGI) 3300054570 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes trubl1@llnl.gov Gareth Trubl No Environmental Terrestrial Pasture Soil Unclassified Soil 39.00177 -123.06967 84706694 229739 37 0 61 1 Unrestricted 252.43 Metagenome 3300013132 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo - kab_092012_9.5m DOE Joint Genome Institute (JGI) 3300013132 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -1.64 29.05 2025304154 3935440 1583 154 2403 265 SRX7700203 Unrestricted 16.01 Metagenome 3300003758 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 DOE Joint Genome Institute (JGI) 3300003758 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 93285139 141457 88 0 118 1 SRX2770674 Unrestricted 0.0 Metagenome 3300008220 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908 DOE Joint Genome Institute (JGI) 3300008220 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 43.02 8.37 369726776 757303 179 0 309 0 SRX2753837 Unrestricted 0.0 Metagenome 3300070719 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Alabama, USA - LENO_003-M-20180709-COMP-DNA1 3300070719 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 49598508 146406 69 2 138 2 0.0 Metagenome 3300005600 *Microbiome Permanent Draft Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.1 DOE Joint Genome Institute (JGI) 3300005600 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jeremy.rich@maine.edu Jeremy Rich No Environmental Aquatic Coastal Marine Sediment Marine sediment 1822753805 4906248 1410 81 2416 164 SRX2837943 Unrestricted 0.0 Metagenome 3300041066 *Microbiome Permanent Draft Contaminated soil microbial communities from Humid Pampas, Chascomus Partido, Argentina Control soil microbial communities from Humid Pampas, Chascomus Partido, Argentina - L4_513 Illumina 3300041066 Metagenome Analysis Megahit v. 1.2.10 released by JGI data releasing policy No Yes valeria.imperato@uhasselt.be Valeria Imperato No Environmental Terrestrial Unclassified Soil Agricultural land Control soil -35.5787 -58.0138 16700081 37625 47 2 83 5 0.0 Metagenome 3300028236 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen10, Rep 2, Chloramphenicol (External Submission) DOE Joint Genome Institute (JGI) 3300028236 Metagenome Analysis No Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 365694745 573820 80 31 143 62 Unrestricted 0.0 Metagenome 3300020128 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant dump, University of Wisconsin, Madison, United States - 3A50A DOE Joint Genome Institute (JGI) 3300020128 Metagenome Analysis spades v. 3.10.1 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0758 -89.4125 61783943 82204 46 0 63 3 SRX3988747 Unrestricted 45.39 Metagenome 3300027883 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean- Svalbard ARC20M Metagenome (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027883 Metagenome Analysis spades v. 3.11.1 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 78.8697 8.1122 1943984402 3682637 407 379 435 556 SRX2997722 Unrestricted 0.0 Metagenome 3300039773 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_003-O-20170619-COMP-DNA1 Battelle Memorial Institute 3300039773 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 37484444 97729 90 16 136 21 0.0 Metagenome 3300012008 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A39_80cm_12M University of Tennessee 3300012008 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 347265445 797241 120 10 237 16 SRX710613 0.0 Metagenome 3300042450 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Feb2015-rr0111 DOE Joint Genome Institute (JGI) 3300042450 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 721409812 1093028 232 51 294 60 Unrestricted 17.28 Metagenome 3300014692 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01467 Weill Cornell Medical College 3300014692 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.61 -73.95 62410134 73225 15 2 14 4 SRX823359 0.0 Metagenome 3300000400 *Microbiome Permanent Draft Porifera Rhopaloeides odorabile microbial communities from Palm Island, Great Barrier Reef Rhopaloeides odorabile microbial communities from Palm Island, Great Barrier Reef, Australia - replicate 1 J. Craig Venter Institute 3300000400 Metagenome Analysis No Yes t.thomas@unsw.edu.au Torsten Thomas Yes 22699508 Host-associated Porifera Unclassified Sponge Unclassified Porifera Rhopaloeides odorabile -18.68 146.58 48887561 108812 40 0 74 0 0.0 Metagenome 3300038556 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Komarekiella atlantica HA4396-MV6 and co-occurring heterotrophs from cyanobacterial mat from Theobald House, Kauai, HI, United States - 20190625_25 DOE Joint Genome Institute (JGI) 3300038556 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Aquatic Puddle Freshwater Microbial mats Cyanobacterial mat 21.9156 -159.51 125824624 141116 40 0 54 0 SRX9404615 Unrestricted 91.11 Metagenome 3300029074 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 172_4M Beijing Genomics Institute (BGI) 3300029074 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 51139155 54944 36 0 52 0 ERX490966 0.0 Metagenome 2040502001 *Microbiome Draft Soil microbial communities from FACE and OTC sites in USA Soil microbial communities from sample at FACE Site 2 North Carolina CO2+ DOE Joint Genome Institute (JGI) 2040502001 Metagenome Analysis Newbler released based on JGI ITS No Yes kuske@lanl.gov Cheryl Kuske No Environmental Terrestrial Unclassified Soil Unclassified Soil 36.0 -80.934 143751359 364865 94 0 155 0 Unrestricted 0.0 Metagenome 3300001348 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic Microbial community sample from North Sea - COGITO 998_met_04 DOE Joint Genome Institute (JGI) 3300001348 Metagenome Analysis Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Pelagic marine 54.184167 7.9 512265999 968088 369 63 614 84 SRX802202 Unrestricted 0.0 Metagenome 3300037674 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 3416 DOE Joint Genome Institute (JGI) 3300037674 Metagenome Analysis metaspades v. 3.13.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Coastal Marine Unclassified seawater 36.7468 -122.0193 2247287706 5181666 1271 311 2300 491 SRX9097218, SRX9097219 Unrestricted 0.0 Metagenome 3300049580 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 DOE Joint Genome Institute (JGI) 3300049580 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.40849 -82.168434 1510360821 2399023 573 34 923 55 Unrestricted 14.35 Metagenome 3300029790 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 015_6_4_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029790 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 263753077 349960 226 0 325 0 0.0 Metagenome 3300010409 *Microbiome Permanent Draft Giant kelp blades associated microbial communities from the kelp forest near Monterey Bay Aquarium, California, USA Giant kelp blades associated microbial communities from the kelp forest near Monterey Bay Aquarium, California, USA - sample B Leibniz Institute 3300010409 Metagenome Analysis IDBA_UD v.1.1.1 released per submitter's request Yes Yes john.vollmers@kit.edu; aka14@dsmz.de John Vollmers; Anne Kaster No Host-associated Algae Unclassified Brown Algae Unclassified marine brown algae (kelp) associated 36.619 -121.9 189059224 239572 185 1 173 0 0.0 Metagenome 3300030091 *Microbiome Permanent Draft Acid mine drainage microbial biofilm communities from Richmond Mine, California, USA Acid mine drainage biofilm communities from Richmond mine site C75, Iron Mt, CA, USA - AMDC750608V3 University of California, Berkeley 3300030091 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 40.67542 -122.53025 16255496 20757 11 0 14 0 0.0 Metagenome 3300069226 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from National Grasslands LBJ, Texas, USA - CLBJ_033-M-20210505-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069226 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Grasslands Soil Unclassified Terrestrial soil 33.38097 -97.62021 4258032170 8695554 1702 58 2883 107 0.0 Metagenome 3300000295 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM334 Beijing Genomics Institute (BGI), Macrogen 3300000295 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 97355576 212861 411 1 664 3 0.0 Metagenome 3300042261 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lake Yojoa, Honduras - Yojoa_06_2019_Q_hypo (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300042261 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Lake Freshwater Unclassified Freshwater 14.8889 -87.9718 1946680808 3624705 1137 26 1858 33 Unrestricted 16.24 Metagenome 3300004070 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2 DOE Joint Genome Institute (JGI) 3300004070 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.198971 -122.026955 687085209 2159433 853 13 1951 24 SRX7142962 Unrestricted 0.0 Metagenome 3300049756 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MB38 DOE Joint Genome Institute (JGI) 3300049756 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 309412611 877953 561 9 1147 19 Unrestricted 8.67 Metagenome 3300000877 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 P3 DOE Joint Genome Institute (JGI) 3300000877 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 56925587 110951 64 0 108 1 SRX3311546 Unrestricted 0.0 Metagenome 3300048573 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_31 DOE Joint Genome Institute (JGI) 3300048573 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9236 -106.9499 342668726 786721 720 156 1430 202 Restricted 0.0 Metagenome 3300017941 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150 DOE Joint Genome Institute (JGI) 3300017941 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 950523475 1767178 601 12 1033 15 SRX3959981 Unrestricted 16.43 Metagenome 3300006859 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_host_MetaG DOE Joint Genome Institute (JGI) 3300006859 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes binskeep@montana.edu William Inskeep, William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.7315 -110.7113 154978463 436083 162 1 321 1 SRX2918055 Unrestricted 0.0 Metagenome 3300034341 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Seawater microbial communities from Algarve, Portugal - SW04 Molecular Research LP (MR DNA) 3300034341 Metagenome Analysis Metawrap workflow v. 1.0.9 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Environmental Aquatic Oceanic Marine Unclassified seawater 36.979778 -7.989111 69149001 89912 22 2 36 3 0.0 Metagenome 3300014079 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Indonesia to Iowa, USA - IO8 Iowa State University 3300014079 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 2180112 3801 0 2 0 0 SRX1150295 0.0 Metagenome 3300038780 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog45 BILS 3300038780 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 2701256 7298 15 0 6 0 ERX1594867 0.0 Metagenome 3300023092 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L148-409B-2 DOE Joint Genome Institute (JGI) 3300023092 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 582255311 1306344 629 118 1058 153 SRX4798765 Unrestricted 9.35 Metagenome 3300017753 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 30 SPOT_SRF_2012-01-26 DOE Joint Genome Institute (JGI) 3300017753 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 320466900 763070 116 128 186 203 SRX5471777, SRX5471776, SRX5471775 Unrestricted 0.0 Metagenome 3300039121 *Microbiome Permanent Draft Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA - pen9 University of Minnesota 3300039121 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic River Freshwater Unclassified Freshwater 44.917867 -93.128967 4470652 4768 3 0 1 0 0.0 Metagenome 3300022496 *Microbiome Permanent Draft Human saliva microbial communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva microbial communities from oral cavities of IgA immunodeficiency people from Alicante, Spain - individual 8 Autonomous University of Barcelona 3300022496 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.38 -0.51 15318436 20256 18 0 19 0 0.0 Metagenome 3300025839 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-05 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025839 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 642879730 1126417 578 31 895 49 SRX3197918 Unrestricted 0.0 Metagenome 3300033418 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A DOE Joint Genome Institute (JGI) 3300033418 Metagenome Analysis spades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified soil 41.3792 -82.512 6097627518 16532536 4178 115 7758 218 SRX6871090 Unrestricted 7.43 Metagenome 3300029577 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P012V1 Beijing Genomics Institute (BGI) 3300029577 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 224410430 257520 153 0 203 0 0.0 Metagenome 3300026088 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026088 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 4758448127 10988582 1838 216 3271 386 SRX2837051 Unrestricted 0.0 Metagenome 3300006242 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764588959 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006242 Metagenome Analysis SPADES v3.6.1 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 10605203 21124 17 1 28 0 0.0 Metagenome 3300001062 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1104 DOE Joint Genome Institute (JGI) 3300001062 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 55005 154 17 0 18 1 SRX1987003 Unrestricted 0.0 Metagenome 3300015263 *Microbiome Permanent Draft Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_7 Beijing Novogene Bioinformatics Technology Co., Ltd 3300015263 Metagenome Analysis IDBA_UD released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Intertidal zone Marine Mangrove sediment Mangrove sediment 22.0 114.0 4718584318 8376328 3391 171 6042 228 0.0 Metagenome 3300001404 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 415-2 deep-072012 DOE Joint Genome Institute (JGI) 3300001404 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 51947787 124376 105 12 159 18 SRX4917243 Unrestricted 0.0 Metagenome 3300001942 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Polynesia - GS047 J. Craig Venter Institute (JCVI) 3300001942 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Oceanic Marine Unclassified Marine -10.131389 -135.44945 50627822 92716 51 1 94 2 0.0 Metagenome 3300029098 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 10_12M Beijing Genomics Institute (BGI) 3300029098 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 108179585 124373 79 0 116 0 ERX490923 0.0 Metagenome 7000000339 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 764042746 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000339 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 186551 501 0 0 0 0 SRX024926 0.0 Metagenome 3300031936 *Microbiome Permanent Draft Microbial communities from the deep biosphere Mediterranean forest soil microbial communities from Voltri Massif, Liguria, Italy - LIG_GOR3AB_2012 re-assembly Marine Biological Laboratory 3300031936 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Temperate forest Soil Bulk soil Mediterranean forest soil 44.597 8.7833 109868083 249236 110 13 199 16 SRX1055083 0.0 Metagenome 3300027330 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35 (SPAdes) DOE Joint Genome Institute (JGI) 3300027330 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 208674086 485793 168 1 308 1 SRX4340826 Unrestricted 0.0 Metagenome 3300031771 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19 DOE Joint Genome Institute (JGI) 3300031771 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 2631169008 6382801 725 8 1319 16 SRX5820200 Unrestricted 15.02 Metagenome 3300046777 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Kansas, United States - mcdi_2019_sw_WHONDRS-S19S_0017 (version 2) DOE Joint Genome Institute (JGI) 3300046777 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9468 -96.4438 315992031 560208 195 92 318 134 Unrestricted 0.0 Metagenome 3300025520 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_QV12A (SPAdes) DOE Joint Genome Institute (JGI) 3300025520 Metagenome Analysis spades v. 3.11.1 Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 158234301 255383 132 5 197 8 SRX3321853 Unrestricted 0.0 Metagenome 3300035542 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B2.8_Sample2.Rodeo8.Well662 DOE Joint Genome Institute (JGI) 3300035542 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 172062358 282353 186 4 259 4 SRX8352748 Unrestricted 64.26 Metagenome 3300042037 *Microbiome Permanent Draft Mollusc gills microbial communities from various hydrothermal vent in Atlantic Ocean Mollusc gills microbial communities from Lucky Strike-Montsegur hydrothermal vent, Atlantic Ocean - BazoSym_LS-MS_3_1048H Max Planck Institute for Marine Microbiology 3300042037 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 37.28806 -32.27557 7831468 10832 2 1 4 1 ERX3367191 0.0 Metagenome 3300044216 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T4 S DOE Joint Genome Institute (JGI) 3300044216 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.6935 -64.1498 340376661 786613 24 4 40 11 Unrestricted 36.73 Metagenome 3300005536 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG DOE Joint Genome Institute (JGI) 3300005536 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 4876010569 13092455 3064 65 5333 143 SRX2744772 Unrestricted 0.0 Metagenome 3300039412 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P7_D8 DOE Joint Genome Institute (JGI) 3300039412 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 1451688352 2043562 405 9 554 16 SRX9635091 Unrestricted 39.24 Metagenome 3300040759 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P16_D2 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300040759 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 1214222417 1807294 305 45 464 67 SRX9635032, SRX9635031 Unrestricted 0.0 Metagenome 3300043660 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 330-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043660 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9537 -107.0679 536660959 1448964 478 28 893 47 Unrestricted 7.47 Metagenome 3300002709 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A4-12 DOE Joint Genome Institute (JGI) 3300002709 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 441456 1561 23 0 54 0 SRX1991275 Unrestricted 0.0 Metagenome 3300028103 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepC_8d DOE Joint Genome Institute (JGI) 3300028103 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 195219923 431746 187 10 333 11 SRX5245407 Unrestricted 12.43 Metagenome 3300049516 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_B_5_drought DOE Joint Genome Institute (JGI) 3300049516 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 95844310 241783 219 12 437 19 Unrestricted 20.93 Metagenome 3300009685 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC033_MetaG DOE Joint Genome Institute (JGI) 3300009685 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 39.84 -89.0 1040389830 1812272 901 4 1432 4 SRX2157889 Unrestricted 0.0 Metagenome 3300046001 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater viral communities from Lake Mendota, Wisconsin, United States - ME_2020-08-05_15m_Virus_AB DOE Joint Genome Institute (JGI) 3300046001 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 933734472 1852651 240 15 400 18 Unrestricted 31.99 Metagenome 3300040193 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_003-M-20140314-COMP-DNA1 Argonne National Laboratory 3300040193 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 10246108 29396 38 5 63 6 0.0 Metagenome 3300045446 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-549 Genome Quebec 3300045446 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.008293 -122.35186 1136516098 2428691 448 139 704 232 0.0 Metagenome 3300033811 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Sediment microbial communities from East River floodplain, Colorado, United States - 28_j17 DOE Joint Genome Institute (JGI) 3300033811 Metagenome Analysis spades v. 3.13.0 Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Aquatic Sediment Floodplain Unclassified sediment 38.9229 -106.9499 416489388 1125412 465 6 802 20 SRX7630717 Unrestricted 9.02 Metagenome 3300042906 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2016-rr0220 DOE Joint Genome Institute (JGI) 3300042906 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1273779718 1891588 453 87 609 142 Unrestricted 16.82 Metagenome 3300069450 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_005-M-20140618-COMP-DNA1 re-annotation Argonne National Laboratory 3300069450 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 3303983 10657 33 4 72 6 ERX2134008 0.0 Metagenome 3300000956 *Microbiome Permanent Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Kansas, Native Prairie soil v2 (version 2) DOE Joint Genome Institute (JGI) 3300000956 Metagenome Analysis Velvet released based on JGI ITS Yes Yes janet.jansson@pnnl.gov Janet Jansson Yes 30158906 Environmental Terrestrial Unclassified Soil Grasslands Soil 39.214012 -96.585283 7.6 9280824611 31876498 3587 194 10857 449 Unrestricted 0.0 Metagenome 3300043044 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5CB15 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043044 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 8971143 26020 52 6 94 8 SRX8379341 Unrestricted 24.54 Metagenome 3300049649 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought DOE Joint Genome Institute (JGI) 3300049649 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 272905983 632077 458 43 901 59 Unrestricted 15.47 Metagenome 3300070912 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Colorado, USA - CPER_001-M-20190626-COMP-DNA1 3300070912 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 455834 1565 5 0 15 1 0.0 Metagenome 3300025175 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0758 (SPAdes) DOE Joint Genome Institute (JGI) 3300025175 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -32.81 12.77 35870091 84155 64 26 134 38 SRX1982968 Unrestricted 0.0 Metagenome 3300042226 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D185_3 DOE Joint Genome Institute (JGI) 3300042226 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 143751634 191794 90 6 135 14 Unrestricted 75.66 Metagenome 3300069261 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Yellowstone NP, Wyoming, USA - YELL_051-M-20210705-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069261 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 44.954277 -110.541571 2764498655 6957571 1856 86 3555 176 0.0 Metagenome 3300016268 *Microbiome Permanent Draft compost metatagenome project Household and green waste compost microbial communities from Goettingen compost company, Germany - 76C pile Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory 3300016268 Metagenome Analysis mira4 released by JGI data releasing policy No Yes mingjilv@gmail.com mingji lu No Engineered Solid waste Composting Household waste Unclassified Household- and green- waste compost 51.573639 9.909167 98351291 252288 415 19 663 30 0.0 Metagenome 3300027281 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1547B-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027281 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2314 -123.8828 213690249 437924 157 10 247 14 SRX2753628 Unrestricted 0.0 Metagenome 7000000738 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764083206 replicate 2 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000738 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 90833887 161822 0 0 0 0 0.0 Metagenome 3300045505 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Cordillera ecozone, Canada - Lake 13-562 Genome Quebec 3300045505 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 60.080432 -128.745812 1135328643 2591567 551 128 912 215 0.0 Metagenome 3300024277 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Miss_RepA_8d DOE Joint Genome Institute (JGI) 3300024277 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 124579694 268446 126 20 216 27 SRX4547484 Unrestricted 16.51 Metagenome 3300069534 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_001-M-20130709-COMP-DNA1 re-annotation Argonne National Laboratory 3300069534 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 2865426 9066 41 3 62 5 ERX2134022 0.0 Metagenome 3300040358 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 047B_R1 University of Maryland 3300040358 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.96986389 25.65290556 6561535 14463 14 1 33 5 0.0 Metagenome 3300002308 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Nasutitermes corniger P4 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P4 DOE Joint Genome Institute (JGI) 3300002308 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,, Yes Yes brune@mpi-marburg.mpg.de Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 26.0625 -80.2332 1643542793 3796591 925 79 1554 100 SRX2553512, SRX2553511 Unrestricted 0.0 Metagenome 3300032782 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1 DOE Joint Genome Institute (JGI) 3300032782 Metagenome Analysis spades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified soil 26.5052 -80.2345 3125304929 6377818 1360 56 2182 106 SRX5666829 Unrestricted 8.68 Metagenome 3300026716 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN592 (SPAdes) DOE Joint Genome Institute (JGI) 3300026716 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.070856 -96.582821 16353675 53615 58 3 115 2 SRX3311852 Unrestricted 0.0 Metagenome 3300025083 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025083 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.205 -77.515 184705879 418017 11 0 26 0 SRX2926779 Unrestricted 0.0 Metagenome 3300011915 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00235 Weill Cornell Medical College 3300011915 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.82 -73.95 56367050 99258 29 0 45 0 SRX822214 0.0 Metagenome 3300030500 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) DOE Joint Genome Institute (JGI) 3300030500 Metagenome Analysis spades v. 3.12.0 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Host-associated Plants Rhizosphere Roots Unclassified Agave 21.0411 -103.9083 291451256 495277 318 24 509 40 SRX2122698 Unrestricted 0.0 Metagenome 3300013105 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG DOE Joint Genome Institute (JGI) 3300013105 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil corn rhizosphere 42.3948 -85.3738 4159479885 8454885 3350 481 5444 860 SRX4808416 Unrestricted 10.91 Metagenome 3300040646 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_007-M-20170719-COMP-DNA1 Battelle Memorial Institute 3300040646 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 2134639 6574 20 3 30 3 0.0 Metagenome 3300023257 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #476 DOE Joint Genome Institute (JGI) 3300023257 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 246566898 523805 202 1 337 0 SRX4396802 Unrestricted 13.64 Metagenome 3300009959 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 1 Autonomous University of Barcelona 3300009959 Metagenome Analysis SPAdes-3.8.1-Linux released per JGI data release policy Yes Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 6689130 11899 2 0 2 0 0.0 Metagenome 3300011968 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Aquatic prokaryotic and eukaryotic communities from a canal in New York, USA: aquatic canal water -GCSS-06 Weill Cornell Medical College 3300011968 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Unclassified Canal Unclassified Aquatic canal 40.67 -73.99 71041634 184771 106 10 193 18 SRX823480 0.0 Metagenome 3300007190 *Microbiome Permanent Draft Cephalotes ants gut microbiomes Ant gut microbial communities from Cephalotes umbraculatus, Peru Harvard University 3300007190 Metagenome Analysis IDBA-UD released by Yi Hu Yes Yes pl356@drexel.edu, yihu.bnu@gmail.com Piotr Lukasik, Yi Hu No Host-associated Arthropoda: Insects Gut Digestive system Unclassified ant gut -12.5 -70.1 255805434 437100 45 1 70 5 0.0 Metagenome 7000000457 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159571453 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000457 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 93276695 181019 0 0 0 0 0.0 Metagenome 3300041021 *Microbiome Draft Marine sediment microbial community from Mar Menor, Spain Marine sediment microbial community from Mar Menor, Spain - S151 FISABIO - Public Health 3300041021 Metagenome Analysis Megahit v. 1.1.1-2 released by JGI data releasing policy No Yes borja.aldeguer@ua.es Borja Aldeguer No Environmental Aquatic Coastal Marine Sediment Marine sediment 37.67303698 -0.78374087 2096719816 4527835 901 8 1828 20 0.0 Metagenome 3300040519 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Mid-Atlantic, VA, USA - BLAN_005-M-20170713-COMP-DNA1 Battelle Memorial Institute 3300040519 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Farm Terrestrial soil 39.06026 -78.07164 2807864 8872 43 0 78 1 0.0 Metagenome 3300042863 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25May2017-rr0291 DOE Joint Genome Institute (JGI) 3300042863 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 752917520 1120527 174 12 235 23 Unrestricted 20.85 Metagenome 3300027152 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepB_8d DOE Joint Genome Institute (JGI) 3300027152 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 173044143 301738 133 14 199 27 SRX5245213 Unrestricted 13.63 Metagenome 3300046390 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA035-TGU DOE Joint Genome Institute (JGI) 3300046390 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6772 -83.4783 681706856 1596578 323 23 606 44 Unrestricted 9.87 Metagenome 3300070437 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_003-M-20190731-COMP-DNA1 3300070437 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 8519987 25627 44 8 87 11 0.0 Metagenome 3300018488 *Microbiome Permanent Draft Bovine feces microbial communities from beef and dairy calves in Davis, CA, USA Bovine feces microbial communities from beef calf in Davis, CA, USA - DMJL001P re-assembly QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018488 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes jxnliu@ucdavis.edu Jinxin Liu No Host-associated Mammals Large intestine Digestive system Fecal feces 38.5449 -121.7405 199788284 312309 180 0 319 1 0.0 Metagenome 3300027606 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - At.P.rz (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027606 Metagenome Analysis spades v. 3.11.1 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 20.6863 -101.8747 442779093 794872 476 18 770 35 SRX2122697 Unrestricted 0.0 Metagenome 3300005144 *Microbiome Permanent Draft Enrichment culture microbial communities from Rutgers university that are MTBE-degrading Enrichment culture microbial communities from Arthur Kill intertidal strait, New Jersey, USA, that are MTBE-degrading - MTBE-AKM (Arthur Kill Methanogenic) MetaG DOE Joint Genome Institute (JGI) 3300005144 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes haggblom@aesop.rutgers.edu, haggblom@rutgers.edu Max M Haggblom, Max M. Haggblom No Environmental Aquatic Intertidal zone Marine Sediment Enrichment culture 40.58 -74.2 348376689 745188 290 0 490 0 SRX2782476 Unrestricted 0.0 Metagenome 3300044264 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - WIN9-9-12-19 DOE Joint Genome Institute (JGI) 3300044264 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.4422 -120.5394 275234783 811329 416 51 740 108 Restricted 6.43 Metagenome 3300007013 *Microbiome Permanent Draft Freshwater lake microbial communities from Singapore - a non-axenic Oscillatoriales culture (Marina Bay-Pseud) Freshwater lake microbial communities from Singapore - a non-axenic Oscillatoriales culture (Marina Bay-Pseud) Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300007013 Metagenome Analysis CLC Genomics Workbench 8 released per JGI data release policy No Yes boonfei@ualberta.ca BOONFEI TAN No Environmental Aquatic Lake Freshwater Unclassified freshwater lake 1.286816 103.867024 31467826 32898 10 0 8 0 0.0 Metagenome 3300032136 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Coastal sediment microbial communities from Delaware Bay, Delaware, United States - CS-6 worm burrow DOE Joint Genome Institute (JGI) 3300032136 Metagenome Analysis spades v. 3.13.0 Yes Yes jbeam@bigelow.org; demerson@bigelow.org Jake Beam; David Emerson No Environmental Aquatic Coastal Marine Sediment worm burrow 38.7869 -75.1074 3438672817 7689426 2116 103 3443 195 SRX5822388 Unrestricted 8.6 Metagenome 3300000276 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM166 Beijing Genomics Institute (BGI), Macrogen 3300000276 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 55372890 79728 159 0 253 0 0.0 Metagenome 3300071054 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_006-O-20190107-COMP-DNA1 3300071054 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 74164380 204792 118 14 205 21 0.0 Metagenome 3300002142 *Microbiome Permanent Draft Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds M2t3t2 FKB2 (115f) 3300002142 Metagenome Analysis released by JGI data releasing policy No Yes daniel.herlemann@io-warnemuende.de, daniel.herlemann@emu.ee Daniel Herlemann, Daniel P. Herlemann No Environmental Aquatic Unclassified Unclassified Unclassified Marine 57.305 20.0745 237655018 1162250 259 58 568 56 0.0 Metagenome 3300013710 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100488 University of Pennsylvania 3300013710 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14554766 31211 19 3 38 1 SRX756510 0.0 Metagenome 3300036837 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_July_plot3_rep3 DOE Joint Genome Institute (JGI) 3300036837 Metagenome Analysis metaspades v. 3.13.0 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6591 -80.6279 2251976868 3694108 778 12 1320 23 SRX8180458 Unrestricted 13.96 Metagenome 3300015691 *Microbiome Permanent Draft Microbial communities associated with sugarcane Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 003.2_B02 Universidade Estadual de Campinas 3300015691 Metagenome Analysis Spades released by JGI data releasing policy No Yes scs.rafael@gmail.com Rafael Souza No Host-associated Plants Unclassified Phyllosphere Unclassified Phylosphere -22.8187222 -47.05896667 14501242 14023 14 0 15 0 0.0 Metagenome 3300042334 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME28May2015-rr0769 DOE Joint Genome Institute (JGI) 3300042334 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 584396322 949580 174 34 226 32 Unrestricted 20.12 Metagenome 3300012447 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100211 University of Pennsylvania 3300012447 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 10389767 21765 6 0 6 0 SRX756688 0.0 Metagenome 3300070758 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_041-M-20200713-COMP-DNA1 3300070758 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 1874904 6133 35 1 59 1 0.0 Metagenome 3300047522 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Drouetiella lurida LUKESOVA 1986/6 and co-occurring heterotrophs from soil from City of Most, Czech Republic - 20190301_18B DOE Joint Genome Institute (JGI) 3300047522 Metagenome Analysis metaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Clay Soil Unclassified Soil 50.5402 13.6052 10216691 9968 2 0 3 0 Restricted 0.0 Metagenome 3300039006 *Microbiome Permanent Draft Farm soil microbial communities from Tibetan Plateau, China Farm soil microbial communities from Tibetan Plateau, China - G4L Beijing Institute of Life Science, Chinese Academy of Sciences 3300039006 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Unclassified Soil Farm Farm soil 15637077 44513 19 0 73 0 SRX374564 0.0 Metagenome 3300038648 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P6_D2 DOE Joint Genome Institute (JGI) 3300038648 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 1279175307 1887351 311 10 477 21 SRX9472088 Unrestricted 15.98 Metagenome 3300030009 *Microbiome Permanent Draft Human fecal microbial community of Hadza hunter-gatherer and regular subjects from Tanzania and Italy Human fecal microbial community of Hadza hunter-gatherer populations from Tanzania - 10020 University of Bologna 3300030009 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal -3.6347588 35.0828588 58498058 105969 134 4 238 7 0.0 Metagenome 3300024957 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 62_LOW9 (SPAdes) DOE Joint Genome Institute (JGI) 3300024957 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 84707847 131306 41 0 42 0 SRX2720760 Unrestricted 0.0 Metagenome 3300035068 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - C8-0 Autonomous University of Barcelona 3300035068 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 89339963 368259 859 0 1616 0 0.0 Metagenome 3300051362 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D20_RHK1_4_to_SEK1 DOE Joint Genome Institute (JGI) 3300051362 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.244 354758148 740438 286 117 489 190 Unrestricted 26.84 Metagenome 3300049380 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - 13-1 DOE Joint Genome Institute (JGI) 3300049380 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 266995494 730505 347 10 622 11 Unrestricted 7.15 Metagenome 3300001135 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN349 DOE Joint Genome Institute (JGI) 3300001135 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 412216 1478 25 0 35 2 SRX3311795 Unrestricted 0.0 Metagenome 3300057026 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E1L_50_52 DOE Joint Genome Institute (JGI) 3300057026 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.997158 -81.489236 1316389942 1995314 552 1 981 0 Unrestricted 12.77 Metagenome 3300044817 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_45BS DOE Joint Genome Institute (JGI) 3300044817 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4934 -106.0708 522099164 939286 298 23 510 31 SRX20649811 Unrestricted 18.92 Metagenome 3300044531 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 223-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044531 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9619 -107.0301 258097961 781725 399 24 747 43 Unrestricted 6.66 Metagenome 3300038356 *Microbiome Permanent Draft Freshwater sediment microbial communities from Alaska Lake sediment microbial communtites from St. Paul Island, Alaska - PH147_531 University of California, Santa Cruz 3300038356 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Sediment Lake sediment 57.18 -170.25 1517376 4670 0 0 0 0 0.0 Metagenome 3300039843 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONZ_003-M-20170710-COMP-DNA1 Battelle Memorial Institute 3300039843 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.10077 -96.56309 22304664 63840 77 3 171 7 0.0 Metagenome 3300035015 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Oscillatoria princeps RMCB-10 and co-occurring heterotrophs from surface water from Lunzer Lake, Lower Austria, Austria - 20181204_36 DOE Joint Genome Institute (JGI) 3300035015 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Aquatic Lake Freshwater Unclassified Surface water 47.8529 15.0398 91064961 107156 35 0 35 0 SRX8239061 Unrestricted 114.68 Metagenome 3300070565 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_041-O-20190806-COMP-DNA1 Battelle Memorial Institute 3300070565 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 68.666666 -149.369752 4.74-5.41 10295124 33400 58 3 92 4 0.0 Metagenome 3300007561 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1561A-3 DOE Joint Genome Institute (JGI) 3300007561 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2637 -123.4651 371511957 682722 314 134 512 233 SRX2753752 Unrestricted 0.0 Metagenome 3300036943 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B6.7_Sample6.Rodeo7.Well1132 DOE Joint Genome Institute (JGI) 3300036943 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 398533282 701938 353 0 544 0 SRX8356264 Unrestricted 23.23 Metagenome 3300049231 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB3 DOE Joint Genome Institute (JGI) 3300049231 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 34354794 92119 141 1 335 4 Unrestricted 21.36 Metagenome 3300050668 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_1A1_100118_1351 DOE Joint Genome Institute (JGI) 3300050668 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 522072497 859563 253 90 374 133 Unrestricted 20.8 Metagenome 3300021576 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from harmful algae blooms in Lake Erie, Western Basin, USA - E2014-0034-100-LTR Downsampled Assembly University of Michigan 3300021576 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Algal bloom Freshwater 41.764333 -83.3323 8.375 20011799 38398 17 15 23 29 0.0 Metagenome 3300013550 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100417 University of Pennsylvania 3300013550 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 752992 1745 6 0 10 0 SRX756581 0.0 Metagenome 3300070359 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Alaska, USA - DEJU_046-M-20180621-COMP-DNA1 3300070359 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 24971554 74968 79 21 156 36 0.0 Metagenome 3300012168 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT860_2 DOE Joint Genome Institute (JGI) 3300012168 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9226 -106.9518 213085343 483483 288 21 591 49 SRX3369047 Unrestricted 0.0 Metagenome 3300003318 *Microbiome Permanent Draft Marine bryozoan Bugula neritina associated microbial communities from Front Street Docks, Beaufort, NC Marine bryozoan Bugula neritina associated microbial communities from Front Street Docks, Beaufort, NC - Sample 33269 3300003318 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes drikaul@umich.edu Drishti Kaul No Host-associated Invertebrates Gymnolaemates Bryozoans Unclassified Marine bryozoan Bugula neritina associated 34.71607 -76.665238 412691870 740030 4 113 14 136 0.0 Metagenome 3300012115 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF #256 DOE Joint Genome Institute (JGI) 3300012115 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 84892439 170114 51 2 116 4 SRX3296277 Unrestricted 0.0 Metagenome 3300042827 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142 NMDC pilot DOE Joint Genome Institute (JGI) 3300042827 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92045766 -106.94845279 1169759217 2866625 773 37 1431 57 SRX5354686 0.0 Metagenome 3300014862 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT293_16_1Da DOE Joint Genome Institute (JGI) 3300014862 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9228 -106.9508 80492378 214987 255 18 529 33 SRX3780507 Unrestricted 4.19 Metagenome 3300045150 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_1_A DOE Joint Genome Institute (JGI) 3300045150 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 165900863 199773 103 1 133 1 Unrestricted 123.36 Metagenome 3300041757 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_495 MetaG AgResearch, New Zealand, Mosgeil 3300041757 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1146500066 2171509 216 19 771 45 0.0 Metagenome 3300026764 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A2w-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300026764 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 15355255 50138 79 1 137 3 SRX1991145 Unrestricted 0.0 Metagenome 3300014570 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS63_12 University of Hohenheim 3300014570 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 118509429 185224 77 0 112 0 0.0 Metagenome 3300070518 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_048-M-20190313-COMP-DNA1 Battelle Memorial Institute 3300070518 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 37.110011 -119.735218 6.43-6.69 352788 1248 12 1 21 0 0.0 Metagenome 3300053132 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 endosphere DOE Joint Genome Institute (JGI) 3300053132 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.120971 -123.270935 273287675 358830 37 30 31 43 Unrestricted 16.18 Metagenome 3300001879 *Microbiome Permanent Draft Desert and grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils - Sample 4 3300001879 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Terrestrial Unclassified Soil Grasslands Desert and grassland soil 23.850674 69.734802 0 0 0 0 0 0 0.0 Metagenome 3300021395 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2016_1, 0.02 Toyama Prefectural University 3300021395 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Sediment marine 36.96723 137.36471 51839326 150545 18 1 51 3 0.0 Metagenome 3300046672 *Microbiome Permanent Draft Soil microbial communities from Blodgett Forest Research Station, California, USA Soil microbial communities from Blodgett Forest Research Station, California, USA - BWE201506023H1020 DOE Joint Genome Institute (JGI) 3300046672 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.912 -120.6612 144417607 269334 186 22 384 34 Unrestricted 19.29 Metagenome 3300039937 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_047-O-20160822-COMP-DNA1 Battelle Memorial Institute 3300039937 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 20465492 59397 76 4 145 6 0.0 Metagenome 3300043347 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 158-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043347 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9828 -107.0094 291671641 885808 436 28 877 45 Unrestricted 6.23 Metagenome 3300013434 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100188 University of Pennsylvania 3300013434 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8006107 15709 4 2 6 6 SRX756345 0.0 Metagenome 3300031243 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #712 DOE Joint Genome Institute (JGI) 3300031243 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4563 78.1898 311296816 605705 152 21 206 44 SRX5649503 Unrestricted 45.8 Metagenome 3300011870 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00686 Weill Cornell Medical College 3300011870 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.8 -73.96 48011211 71911 33 0 47 0 SRX822653 0.0 Metagenome 3300000082 *Microbiome Permanent Draft Hot Spring microbial communities from Great Boiling Spring, Nevada Hot spring sediment microbial communities from Great Boiling Spring, Nevada - Cellulolytic enrichment Sediment 77C v1 DOE Joint Genome Institute (JGI) 3300000082 Metagenome Analysis Soap denovo and minimus released based on JGI ITS Yes Yes brian.hedlund@unlv.edu Brian P. Hedlund, Brian Hedlund Yes 23555835 Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot Spring 40.71458 -119.369659 6.37 79003005 136556 51 0 105 0 Unrestricted 0.0 Metagenome 3300020248 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000123 (ERX556118-ERR599141) CEA Genoscope 3300020248 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 6.0124 73.8985 161163553 442041 139 5 276 7 0.0 Metagenome 3300007234 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA DOE Joint Genome Institute (JGI) 3300007234 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 693778560 1894525 396 9 687 12 SRX2852904 Unrestricted 0.0 Metagenome 3300025029 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-39 (SPAdes) DOE Joint Genome Institute (JGI) 3300025029 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 50.0005 -144.9958 68644568 138738 55 0 51 0 Unrestricted 0.0 Metagenome 3300055468 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.3C.7 SIP fraction DOE Joint Genome Institute (JGI) 3300055468 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 304962223 555224 159 2 250 2 Unrestricted 15.96 Metagenome 3300049564 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - TCR_080817 DOE Joint Genome Institute (JGI) 3300049564 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Unclassified Soil Grasslands soil 41.8858 -89.3241 896660582 2056143 505 7 921 16 Unrestricted 0.0 Metagenome 3300008140 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763496533 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008140 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 221022858 368535 148 0 260 2 0.0 Metagenome 3300011562 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00406 Weill Cornell Medical College 3300011562 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.94 22606009 35309 14 0 20 0 SRX822377 0.0 Metagenome 3300049067 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - K26_B_BS (version 2) DOE Joint Genome Institute (JGI) 3300049067 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 117450478 263134 368 8 713 16 Unrestricted 0.0 Metagenome 3300039114 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from Daisy Lake, Ontario, Canada Freshwater lake sediment microbial communities from Daisy Lake, Ontario, Canada - C14 University of Cambridge 3300039114 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 46.27199 -80.52479 9330618 28152 42 0 77 0 0.0 Metagenome 3300001102 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY67 J. Craig Venter Institute (JCVI) 3300001102 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 409968234 1284655 96 35 228 60 0.0 Metagenome 3300037815 *Microbiome Permanent Draft Bacterial communities from sewage treatment works near Birtley, UK Wastewater bacterial communities from sewage treatment works near Birtley, UK - 03 Northumbria University 3300037815 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes martin.spurr@newcastle.ac.uk Martin Spurr No Engineered WWTP Unclassified Wastewater Unclassified wastewater 54.903212 -1.595078 8519471 14456 19 1 22 1 0.0 Metagenome 3300028063 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_18SEP2017_LD1 DOE Joint Genome Institute (JGI) 3300028063 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 117251306 262644 93 78 134 103 SRX5345918 Unrestricted 14.11 Metagenome 3300056850 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Activated sludge microbial communities from bioreactor in WWTP, Madison, WI, USA - RS_2021-06-24_SampleB (version 2) DOE Joint Genome Institute (JGI) 3300056850 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.03331 -89.35633 1552650442 1621309 571 43 576 47 Unrestricted 11.15 Metagenome 3300025643 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_165m (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025643 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 394130152 769109 262 19 373 28 Unrestricted 0.0 Metagenome 3300003912 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 m-RNA DAY 15 University of Sao Paulo, Virginia Bioinformatics Institute 3300003912 Metagenome Analysis SoapDeNovo 2 released per PI's request No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 40469612 77450 15 44 33 110 0.0 Metagenome 3300049316 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA32 DOE Joint Genome Institute (JGI) 3300049316 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 294841242 779619 358 7 634 10 Unrestricted 7.04 Metagenome 7000000485 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 765620695 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000485 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2099547 2237 0 0 0 0 0.0 Metagenome 3300006411 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0200m University of Hawaii 3300006411 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 137066729 350413 404 7 590 16 0.0 Metagenome 3300038764 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - SI150M (SPAdes) Columbia University 3300038764 Metagenome Analysis spades v. 3.11.1 released by JGI data releasing policy Yes Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Inlet Marine Unclassified marine 48.6 -123.5 9807750 16438 0 0 1 0 0.0 Metagenome 3300011688 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01104 Weill Cornell Medical College 3300011688 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.94 12699443 21183 10 0 10 0 SRX823059 0.0 Metagenome 3300054079 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40 re-annotation DOE Joint Genome Institute (JGI) 3300054079 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 482987791 850406 153 1 274 0 SRX3960235 0.0 Metagenome 3300028324 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome NANO (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300028324 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5602 78.1968 4169980 5889 4 0 6 0 SRX2839846 Unrestricted 0.0 Metagenome 3300011407 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT454_2 DOE Joint Genome Institute (JGI) 3300011407 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9775 -107.0021 203951623 487917 442 31 846 51 SRX3539349 Unrestricted 0.0 Metagenome 3300006676 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2 of subject 158256496 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300006676 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 16349570 24852 18 0 23 2 SRX023591, SRX023592, SRX024689, SRX024688 0.0 Metagenome 3300020443 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001179 (ERX556000-ERR598944) CEA Genoscope 3300020443 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 43.7649 -16.8935 1063757769 2752241 722 37 1422 99 0.0 Metagenome 3300025196 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0440 (SPAdes) DOE Joint Genome Institute (JGI) 3300025196 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -22.97 -36.95 66769410 137060 73 22 103 37 SRX1983163 Unrestricted 0.0 Metagenome 3300050582 *Microbiome Permanent Draft Lab-enriched beaver dropping microbial communities from Ontario, Canada American beaver droppings microbial community from Toronto, Canada - BD-PH msp University of Toronto 3300050582 Metagenome Analysis spades v. 3.12.0 Yes Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Host-associated Mammals Large intestine Digestive system Fecal American beaver droppings 43.66 -79.4 528519736 969917 226 0 486 0 SRX13466130 0.0 Metagenome 3300009965 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 7 Autonomous University of Barcelona 3300009965 Metagenome Analysis SPAdes-3.8.1-Linux released per JGI data release policy Yes Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 13135811 23380 5 0 4 0 0.0 Metagenome 3300009657 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC071_MetaG DOE Joint Genome Institute (JGI) 3300009657 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 37.8 -122.27 579264584 1076038 712 3 1052 8 SRX2338986 Unrestricted 0.0 Metagenome 3300006122 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE31Jul07 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006122 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 228639051 671038 192 92 311 253 SRX2565363 Unrestricted 0.0 Metagenome 3300009918 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S3 University of New South Wales 3300009918 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 50340732 87601 13 5 23 6 0.0 Metagenome 3300043684 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - Rondonia_Pasture_1_A10cm DOE Joint Genome Institute (JGI) 3300043684 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.163 -62.836 630738178 1805589 690 15 1205 26 Unrestricted 6.79 Metagenome 3300045305 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-479 Genome Quebec 3300045305 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 53.42795 -124.545783 1095905995 2595155 525 175 899 375 0.0 Metagenome 3300013786 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS877 IDBA reassembly Marine Biological Laboratory 3300013786 Metagenome Analysis reassembly with IDBA-UD released by JGI data releasing policy No Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow diffuse flow hydrothermal vent 18.377 -81.798 18851012 22302 17 2 26 1 0.0 Metagenome 3300014797 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS64_18 University of Hohenheim 3300014797 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 128258671 216848 94 0 170 0 0.0 Metagenome 3300039241 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P16_D2 DOE Joint Genome Institute (JGI) 3300039241 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 259357136 411900 105 29 160 36 SRX9635032, SRX9635031 Unrestricted 0.0 Metagenome 3300005813 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS874 Marine Biological Laboratory 3300005813 Metagenome Analysis Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow diffuse flow hydrothermal vent 18.376 -81.797 11529412 14416 1 0 2 0 0.0 Metagenome 3300009045 *Microbiome Permanent Draft The Hungate 1000. A catalogue of reference genomes from the rumen microbiome. Rumen microbial communities from New Zealand - Rumen Methanol Enrichment MEC1 Co-Culture DOE Joint Genome Institute (JGI) 3300009045 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes bill.kelly@agresearch.co.nz, bill.kelly.donvis@gmail.com William Kelly No Host-associated Mammals Stomach Digestive system Rumen Rumen -40.355 175.6117 15555362 45757 194 2 335 16 SRX2753512 Unrestricted 0.0 Metagenome 3300069334 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_004-O-20170731-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069334 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 72173059 215927 113 14 256 21 0.0 Metagenome 3300002508 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Microcerotermes parvus P1 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P1 DOE Joint Genome Institute (JGI) 3300002508 Metagenome Analysis Yes Yes karen.rossmassler@gmail.com, brune@mpi-marburg.mpg.de Karen Rossmassler, Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut -4.7 11.83 1511161985 3567179 138 195 194 258 SRX2554831 Unrestricted 0.0 Metagenome 3300031448 *Microbiome Permanent Draft Rock endolithic microbial communities from Victoria Land, Antarctica Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord DOE Joint Genome Institute (JGI) 3300031448 Metagenome Analysis spades v. 3.12.0 Yes Yes selbmann@unitus.it Laura Selbmann Yes 32139564 Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock -77.9 161.58 820481941 1224383 112 33 134 62 SRX5229473 Unrestricted 42.35 Metagenome 3300042693 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A60 University of California, Davis 3300042693 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 212997213 584069 242 3 472 4 0.0 Metagenome 3300027829 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027829 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 51.62 -128.09 1019931229 2503230 508 176 1066 250 SRX2575218 Unrestricted 0.0 Metagenome 3300027454 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G09K2-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300027454 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 11212887 31632 42 3 104 6 SRX1991307 Unrestricted 0.0 Metagenome 3300013018 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in West Virginia, USA - MSEEL Well Study Marcellus 5H_2016_02_17 DOE Joint Genome Institute (JGI) 3300013018 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back deep subsurface 39.6018 -79.9761 73301315 119134 172 0 359 1 SRX3021895 Unrestricted 85.99 Metagenome 3300037461 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Sediment microbial communities from wetlands near Prado wetlands, California, USA - CSM_Prado_Oct18_PM_Bottom DOE Joint Genome Institute (JGI) 3300037461 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 2552037833 3944853 814 18 1313 30 SRX9164573 Unrestricted 16.55 Metagenome 3300013945 *Microbiome Permanent Draft Fecal viral communites from wild urban brown rats in Berlin, Germany Fecal viral communites from wild urban brown rats in Berlin, Germany - Mu/10/1786 Freie University Berlin 3300013945 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 52.529611 13.401343 4440752 11403 2 0 2 1 SRX616520 0.0 Metagenome 3300029377 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 075_4_30_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029377 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 264496329 381560 315 1 429 1 0.0 Metagenome 3300045938 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Leaf microbial communities from farm grass in Deerfield, Massachusetts, United States - Ryegrass_Phyllosphere_control1 DOE Joint Genome Institute (JGI) 3300045938 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 42.4788 -72.5788 1215913368 2274785 587 213 737 341 Restricted 0.0 Metagenome 3300006865 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG DOE Joint Genome Institute (JGI) 3300006865 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jkjarett@lbl.gov, pfdunfie@ucalgary.ca; rstepanauskas@bigelow.org; jkjarett@lbl.gov Jessica Jarett, Peter Dunfield; Ramunas Stepanauskas; Jessica Jarett No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 60.1987 -125.5127 7.16 1666775961 2740860 1133 22 1711 35 SRX2839452 Unrestricted 0.0 Metagenome 3300028837 *Microbiome Permanent Draft Seawater microbial communities from Yap Trench, western Pacific Ocean Seawater microbial communities from Yap Trench, western Pacific Ocean - 37I-Yap-CTD02-10m 2000bp_Newsun Novogene 3300028837 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes newsun1987@126.com Xinxu Zhang No Environmental Aquatic Ocean trench Marine Unclassified seawater 9.87 138.5 800369972 912320 241 0 251 0 0.0 Metagenome 3300028511 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 4 Selected contigs with viral hallmark genes 2 Autonomous University of Barcelona 3300028511 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 1359060 1870 0 0 0 0 0.0 Metagenome 3300048638 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from North Pacific Ocean - CTD-AT42-06-008-2490m-0.65 DOE Joint Genome Institute (JGI) 3300048638 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 9.83807 -104.29118 678795799 1110875 362 55 529 91 Unrestricted 28.98 Metagenome 3300060283 *Microbiome Permanent Draft Sediment microbial communities from the PNNL SFA Hanford 300 Area, Columbia River, WA, USA Sediment microbial communities from in situ POM Reactor at the PNNL SFA Hanford 300 Area, Columbia River, WA, USA - Deep Unashed No POM DOE Joint Genome Institute (JGI) 3300060283 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes eroden@geology.wisc.edu Eric Roden No Environmental Aquatic River Freshwater Sediment Sediment 46.467778 -119.464444 1281139021 2043313 610 69 734 91 Unrestricted 26.07 Metagenome 3300033824 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 S2 5-9 DOE Joint Genome Institute (JGI) 3300033824 Metagenome Analysis spades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0471 381548759 731635 135 13 216 26 SRX8138206, SRX8138205 Unrestricted 0.0 Metagenome 3300000747 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 15JUN2009 hypolimnion DOE Joint Genome Institute (JGI) 3300000747 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu, tmcmahon@engr.wisc.edu; rrmalmstrom@lbl.gov Katherine McMahon, Katherine McMahon; Rex Malmstrom Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300002791 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G10K5-12 DOE Joint Genome Institute (JGI) 3300002791 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 24257 86 8 0 16 0 SRX1991296 Unrestricted 0.0 Metagenome 3300027530 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_O2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027530 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 248133187 663799 345 77 668 119 SRX3311919 Unrestricted 0.0 Metagenome 7000000539 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 604812005 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000539 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 4269570 10270 0 0 0 0 0.0 Metagenome 3300026648 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-A (SPAdes) DOE Joint Genome Institute (JGI) 3300026648 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.33 3665762 12182 58 2 90 5 SRX1991364 Unrestricted 0.0 Metagenome 3300022475 *Microbiome Permanent Draft Human saliva microbial communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva microbial communities from oral cavities of IgA immunodeficiency people from Alicante, Spain - individual 2 Autonomous University of Barcelona 3300022475 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.38 -0.51 5166800 6716 6 0 8 0 0.0 Metagenome 3300057199 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2017-0045 DOE Joint Genome Institute (JGI) 3300057199 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.762 -83.33 210405613 441250 217 81 381 137 Unrestricted 15.74 Metagenome 3300032203 *Microbiome Permanent Draft Microbial communities from the deep biosphere Fracture water microbial communities from Thabazimbi mines, South Africa - NO14FW130912 re-assembly The Marine Biological Laboratory 3300032203 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Fracking water Deep subsurface Unclassified Fracture water -24.83 27.34 58090678 167019 105 5 190 14 SRX745166, SRX729931, SRX729923 0.0 Metagenome 3300005336 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG DOE Joint Genome Institute (JGI) 3300005336 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn rhizosphere 42.3948 -85.3738 4610750890 12357604 3669 254 6191 444 SRX2740408 Unrestricted 0.0 Metagenome 3300041014 *Microbiome Permanent Draft Groundwater microbial communities from a tube well in Barasat, West Bengal, India - BS Groundwater microbial communities from a tube well in Barasat, West Bengal, India - BS10 CeGaT 3300041014 Metagenome Analysis Megahit v. 1.2.9 released by JGI data releasing policy No Yes anumeha.saha@gmail.com ANUMEHA SAHA No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 22.73727 88.4726 0 265864209 480980 237 5 345 13 0.0 Metagenome 3300031167 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #418 DOE Joint Genome Institute (JGI) 3300031167 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5596 77.8957 234799103 476643 144 174 208 310 SRX5650214 Unrestricted 18.7 Metagenome 3300025320 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025320 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca Ramunas Stepanauskas; Peter Dunfield No Environmental Aquatic Hot (42-90C) Thermal springs Acidic iron-sulfur acid spring 51.1699 -116.1578 4.19 1411343834 2543380 400 36 789 51 SRX2838986 Unrestricted 0.0 Metagenome 3300031841 *Microbiome Finished The variation of viral communities during algal boom from the coastal of Qingdao, China Marine viral communities from the Yellow sea, Qingdao, China - ZQ0928 Beijing Novogene Bioinformatics Technology Co., Ltd 3300031841 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes foodyqw_12@163.com Yang Qingwei No Environmental Aquatic Coastal Marine Unclassified marine 36.062 120.315 337525922 630214 52 1 93 2 0.0 Metagenome 3300040272 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 092_R1_022417 University of Maryland 3300040272 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.70125 27.07930556 7442344 14402 32 1 59 6 0.0 Metagenome 3300042146 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 DOE Joint Genome Institute (JGI) 3300042146 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.9457 -103.6985 201018603 478979 208 14 386 15 Unrestricted 13.96 Metagenome 3300053105 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 endosphere DOE Joint Genome Institute (JGI) 3300053105 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.588088 -123.192429 434212760 692026 158 122 252 129 Unrestricted 11.51 Metagenome 3300010382 *Microbiome Permanent Draft Methanogenic microbial communities from bioreactors in Yantai Institute of Oceanology, CAS, Yantai, China Methanogenic microbial communities from bioreactors in Yantai Institute of Oceanology, CAS, Yantai, China - reactor 1 Beijing Novogene Bioinformatics Technology Co., Ltd 3300010382 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes limeng848@gmail.com MENG LI No Engineered Bioreactor Marine sediment inoculum Continuous culture Unclassified bioreactor 37.0 121.0 86666207 107795 108 12 128 17 0.0 Metagenome 3300026356 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A DOE Joint Genome Institute (JGI) 3300026356 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 156648636 390601 163 29 323 36 SRX4801748 Unrestricted 10.22 Metagenome 2049941000 *Microbiome Permanent Draft Switchgrass-associated bovine rumen microbial communities from Urbana, Illinois, USA Bovine rumen microbial communities fromthe University of Illinois at Urbana-Champaign, USA, that are switchgrass associated - 900 MB Assembly DOE Joint Genome Institute (JGI) 2049941000 Metagenome Analysis Sczyrba Pipeline Released by Nikos bc they were more than 5 years old No Yes mhess@lbl.gov, mhess@ucdavis.edu Matthias Hess Yes 21273488 Host-associated Mammals Stomach Digestive system Rumen Bovine rumen 40.096 -88.2315 925521509 683911 37 0 38 0 0.0 Metagenome 3300013209 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100324 University of Pennsylvania 3300013209 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 28926320 58312 39 1 61 1 SRX756333 0.0 Metagenome 3300003495 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_150m_DNA DOE Joint Genome Institute (JGI) 3300003495 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 182095532 366907 172 18 277 29 Unrestricted 0.0 Metagenome 2088090014 *Microbiome Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Iowa, Native Prairie soil v2 (version 2) DOE Joint Genome Institute (JGI) 2088090014 Metagenome Analysis Artifact filter, partition at k=32, assemble with Velvet at k19-45, Minimus2 released based on JGI ITS No Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.0042816 -77.1012173 6.2 279478596 400426 52 11 61 0 Unrestricted 0.0 Metagenome 3300003200 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment Column6K5-30 454 Life Sciences 3300003200 Metagenome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.342219 40.479289 6-8 0 0 0 0 0 0 0.0 Metagenome 3300024324 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_200_MG DOE Joint Genome Institute (JGI) 3300024324 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca; shallam@interchange.ubc.ca Sean Crowe; Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5847 -123.5008 676112609 1328546 435 52 658 81 SRX4488537 Unrestricted 41.64 Metagenome 3300029144 *Microbiome Permanent Draft Infant fecal microbial communities from Pittsburgh, USA Infant fecal microbial communities from Pittsburgh, USA - NECEvent2014_2_5 Banfield Lab, University of California, Berkeley 3300029144 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant fecal 40.4308 -79.9598 8420369 11441 22 0 24 0 0.0 Metagenome 3300013929 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00661 Weill Cornell Medical College 3300013929 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.82 -73.93 24799551 37323 17 0 25 0 SRX822628 0.0 Metagenome 3300050234 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Butler, South Dakota, USA - 91_881_SD_DR_1m_c1_T1_16O DOE Joint Genome Institute (JGI) 3300050234 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 45.27223 -97.8369 357743567 655495 183 0 338 0 Restricted 18.51 Metagenome 3300027845 *Microbiome Permanent Draft Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027845 Metagenome Analysis spades v. 3.11.1 Yes Yes jeremy.rich@maine.edu Jeremy Rich No Environmental Aquatic Coastal Marine Sediment Marine sediment 997763709 2486773 767 39 1457 62 SRX2837919 Unrestricted 0.0 Metagenome 3300006110 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH08Jun09 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006110 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 311880444 876071 194 66 322 115 SRX2565944 Unrestricted 0.0 Metagenome 3300036876 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-1-M DOE Joint Genome Institute (JGI) 3300036876 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0474 685707086 1138362 226 12 338 17 SRX8137176 Unrestricted 13.44 Metagenome 3300025279 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_220m (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025279 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; sean.crowe@ubc.ca; jkjarett@lbl.gov Ramunas Stepanauskas; Sean Crowe; Jessica Jarett No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.0288 29.1756 360650496 773143 386 4 622 16 SRX3571191 Unrestricted 16.83 Metagenome 3300050561 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_SEK1_2_to_SEK1 DOE Joint Genome Institute (JGI) 3300050561 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.244 576474467 988590 310 143 525 193 Unrestricted 25.81 Metagenome 3300029211 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011684-90 Beijing Genomics Institute (BGI) 3300029211 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 123784384 176646 127 2 184 4 0.0 Metagenome 7000000128 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 675950834 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000128 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 153802697 268410 0 0 0 0 0.0 Metagenome 3300021418 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - L3s2 DOE Joint Genome Institute (JGI) 3300021418 Metagenome Analysis spades v. 3.11.1-check Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9137 -106.8949 237914021 543841 211 13 418 27 SRX3943496, SRX3943497 Unrestricted 0.0 Metagenome 3300007668 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_A_D2_MG DOE Joint Genome Institute (JGI) 3300007668 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4958 -122.1331 497073746 1035728 632 6 978 6 SRX10967257 Unrestricted 0.0 Metagenome 3300030413 *Microbiome Permanent Draft Acid mine drainage microbial biofilm communities from Richmond Mine, California, USA Acid mine drainage biofilm communities from Richmond mine site Abmuck, Iron Mt, CA, USA - AMDABmuck0507 University of California, Berkeley 3300030413 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 40.67542 -122.53025 23816290 30729 20 3 24 2 0.0 Metagenome 3300070476 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_027-M-20200708-COMP-DNA1 Battelle Memorial Institute 3300070476 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 29.691969 -81.992063 5.46-5.75 12956696 41530 42 3 90 7 0.0 Metagenome 3300067220 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 781 in Three Hills, Alberta, Canada - S00JY_0734 Microbiome Insights 3300067220 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.46151696 -113.1723542 15653283 22803 16 0 20 0 0.0 Metagenome 3300022521 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 20-24 DOE Joint Genome Institute (JGI) 3300022521 Metagenome Analysis spades v. 3.11.1-check Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 85255873 212408 99 10 168 17 SRX4415326, SRX8128003 Unrestricted 0.0 Metagenome 3300070611 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_004-M-20210106-COMP-DNA1 3300070611 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 268250 923 3 0 6 0 0.0 Metagenome 3300047586 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Soil microbial communities from peatland in Alberta, Canada - SB-91-sedgy 20-30 cm DOE Joint Genome Institute (JGI) 3300047586 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4732 -114.8724 818407917 1230899 304 3 459 7 Unrestricted 0.0 Metagenome 3300012453 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100210 University of Pennsylvania 3300012453 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 11015395 23248 8 0 9 0 SRX756689 0.0 Metagenome 3300027796 *Microbiome Permanent Draft Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - High cellulose week 5 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027796 Metagenome Analysis spades v. 3.11.1 Yes Yes rallen2@staffmail.ed.ac.uk Rosalind Allen No Environmental Aquatic Pond Freshwater Sediment Freshwater 55.9225 -3.1724 997012038 1927518 918 30 1491 50 SRX7158195 Unrestricted 0.0 Metagenome 3300021465 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FRT_0-1_MG DOE Joint Genome Institute (JGI) 3300021465 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 180667491 441389 252 38 429 64 SRX3982370 Unrestricted 7.73 Metagenome 3300000237 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 150m DOE Joint Genome Institute (JGI) 3300000237 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 77813730 193490 54 3 112 8 Unrestricted 0.0 Metagenome 3300032177 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0 DOE Joint Genome Institute (JGI) 3300032177 Metagenome Analysis spades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5099 -110.3566 4669447108 10291699 2597 35 4455 65 SRX6380169 Unrestricted 10.17 Metagenome 3300038479 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 P2 1-5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300038479 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0472 1075311839 2232469 376 49 708 76 SRX8138487, SRX8138486 Unrestricted 0.0 Metagenome 3300043353 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 178-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043353 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.8575 -107.0979 556700908 1492363 484 29 892 41 Unrestricted 6.64 Metagenome 3300031257 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1603-80 DOE Joint Genome Institute (JGI) 3300031257 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh sediment 42.722 -70.847 739925382 1386638 609 7 1031 7 SRX6468616 Unrestricted 11.64 Metagenome 3300011194 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 14 - S13.2.55.2.a - transect 2, repeat 2, age 50-113 years, surface depth). University of Bristol 3300011194 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes EAEloeFadrosh@lbl.gov; maisie.nash@bristol.ac.uk; ama@envs.au.dk Emiley Eloe-Fadrosh; Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 78.90055556 12.07611111 7.5 8951989 16646 15 4 46 12 0.0 Metagenome 3300038541 *Microbiome Permanent Draft Seawater viral communities from Osaka Bay, Japan Seawater viral communities from Osaka Bay, Japan - OBV_V9 Kyoto University 3300038541 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Seawater 34.1928 135.0715 9022050 24220 0 0 0 0 0.0 Metagenome 3300037482 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_091317_80_90 DOE Joint Genome Institute (JGI) 3300037482 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 1458018426 2323755 527 5 822 7 SRX9163093 Unrestricted 15.66 Metagenome 3300049192 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - H19_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049192 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 240782777 521961 324 13 648 22 Unrestricted 0.0 Metagenome 3300015077 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300015077 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 1512661109 3570936 1414 47 2628 94 SRX4062629, SRX4062630 Unrestricted 0.0 Metagenome 2236876024 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Methanotrophs enriched from Methane stable-isotope-probing experiment McGill University 2236876024 Metagenome Analysis released per JGI data release policy No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey No Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 56.698568 -111.340799 8.7 34476502 78432 26 0 38 3 0.0 Metagenome 3300001641 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 DOE Joint Genome Institute (JGI) 3300001641 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.180244 13438700 42350 38 0 58 1 SRX2014328 Unrestricted 0.0 Metagenome 3300046460 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere DOE Joint Genome Institute (JGI) 3300046460 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5879 -123.193 908902461 1365114 248 32 379 57 Unrestricted 16.41 Metagenome 3300044638 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME13Jul2012-rr0917 DOE Joint Genome Institute (JGI) 3300044638 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 993874151 1588373 317 30 462 52 Unrestricted 19.99 Metagenome 3300065581 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 769 in Veteran, Alberta, Canada - S00JY_0378 Microbiome Insights 3300065581 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.01390508 -111.1006914 215135051 310251 70 1 118 1 0.0 Metagenome 3300024511 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepA_8h DOE Joint Genome Institute (JGI) 3300024511 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 111446142 236983 128 6 200 7 SRX4547483 Unrestricted 15.26 Metagenome 3300014283 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 215_L4_2014-6-16 San Diego State University 3300014283 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 10327184 23604 10 1 11 6 0.0 Metagenome 3300039976 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 042B_R1 University of Maryland 3300039976 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 61.09211111 25.73877778 19086925 28882 23 2 40 2 0.0 Metagenome 3300020030 *Microbiome Permanent Draft Freshwater viral communities from Chicago Sanitary Ship Canal, USA Freshwater viral communities from Stickney, Illinois, USA - 2 University of Illinois-Urbana Champaign 3300020030 Metagenome Analysis SPADES v3.10.1 released by JGI data releasing policy No Yes wtliu@illinois.edu Wen-Tso Liu No Environmental Aquatic River Freshwater Unclassified Freshwater 41.813611 -87.77138 55370234 131744 5 0 7 0 0.0 Metagenome 3300009029 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189 DOE Joint Genome Institute (JGI) 3300009029 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Permafrost Prmafrost soil 68.6139 -149.3145 1213157526 2349732 768 27 1330 39 SRX2739472 Unrestricted 0.0 Metagenome 3300050013 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 P1 40-44 DOE Joint Genome Institute (JGI) 3300050013 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.047 449318636 626811 111 4 152 6 Restricted 28.92 Metagenome 3300017642 *Microbiome Permanent Draft Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA Microbial communities from bioreactor (seeded with sewage sludge) at Lawrence Berkeley National Lab, California, USA - Biofuel Metagenome 9 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017642 Metagenome Analysis Yes Yes hrbeller@lbl.gov Harry Beller Yes 29556105 Engineered Bioreactor Unclassified Anaerobic Unclassified Bioreactor 37.82 -122.29 146031532 134395 73 0 77 0 SRX2769838, SRX2769839, SRX2769840, SRX2769841 Unrestricted 0.0 Metagenome 3300036665 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Soil microbial communities from Mojave Desert, California, United States - 3NOC DOE Joint Genome Institute (JGI) 3300036665 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Desert Soil Unclassified soil 34.7856 -115.66 239607149 650568 557 20 984 37 SRX8199653 Unrestricted 9.16 Metagenome 3300036957 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - SCT 18 I DOE Joint Genome Institute (JGI) 3300036957 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 1003234718 2004812 899 112 1239 179 SRX8361124 Unrestricted 7.47 Metagenome 3300041951 *Microbiome Permanent Draft Sea ice microbial communities from Coral Harbour, Canada Sea ice microbial communities from Coral Harbour, Canada - CH5A University of Bristol 3300041951 Metagenome Analysis MEGAHIT v. 1.23 released by JGI data releasing policy Yes Yes ggcmb@bristol.ac.uk Christopher Bellas No Environmental Aquatic Sea ice Marine Unclassified Sea ice 64.114617 -83.079383 1.6 538848635 772569 461 43 629 62 0.0 Metagenome 3300010361 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama - MetaG Plot_23 DOE Joint Genome Institute (JGI) 3300010361 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes cpan@ou.edu Chongle Pan No Environmental Terrestrial Tropical forest Soil Bulk soil Tropical forest soil 9.1086 -79.8436 4987660409 10505257 1713 76 3073 130 SRX2525683 Unrestricted 0.0 Metagenome 3300041743 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_45 MetaG AgResearch, New Zealand, Mosgeil 3300041743 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1173364266 2301512 304 27 1016 49 0.0 Metagenome 3300022314 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Garden Lake, Rottnest Island (WA - Australia) - GL1GP3 JM108 AGRF 3300022314 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.995604 115.536873 36426872 71775 33 1 57 3 0.0 Metagenome 3300015598 *Microbiome Permanent Draft Wastewater microbial communities from the domestic sewers Wastewater microbial communities from domestic sewers in Singapore - Site C Oct Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300015598 Metagenome Analysis CLC workbench released by JGI data releasing policy No Yes erinscm@nus.edu.sg Charmaine Ng No Engineered Wastewater Unclassified Sewage Unclassified Wastewater 1.28362 103.859825 90567303 106002 18 0 15 0 0.0 Metagenome 3300037160 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 P3 30-34 DOE Joint Genome Institute (JGI) 3300037160 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3535 19.0473 841614723 1638386 311 4 513 10 SRX8145067 Unrestricted 8.57 Metagenome 3300025312 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 4 - CSP-I_5_4 (version 2) DOE Joint Genome Institute (JGI) 3300025312 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 26033198 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 5 1071486280 2311258 1030 10 1843 16 SRX1758553 Unrestricted 0.0 Metagenome 3300002887 *Microbiome Permanent Draft Mangrove sediment microbial communities from Bertioga, Sao Paulo, Brazil under petroleum contamination Mangrove sediment microbial communities from Bertioga, Sao Paulo, Brazil under petroleum contamination, Sample - fosmid 23d5 pole 3300002887 Metagenome Analysis clc released by JGI data releasing policy No Yes mv_pole@yahoo.com.br Marcus Louren?o, Marcus Lourenco No Environmental Aquatic Intertidal zone Marine Mangrove sediment Mangrove sediment -23.905266 -46.206263 6.8 71025 77 0 0 0 0 0.0 Metagenome 3300009643 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_8_40 DOE Joint Genome Institute (JGI) 3300009643 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 458038491 805334 208 2 368 5 SRX3002152 Unrestricted 0.0 Metagenome 3300023504 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_16B University of California, Irvine 3300023504 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 167655809 168455 21 0 21 0 0.0 Metagenome 3300026479 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 26D DOE Joint Genome Institute (JGI) 3300026479 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 256471292 478363 180 24 221 51 SRX4457707 Unrestricted 20.96 Metagenome 3300014607 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00115 Weill Cornell Medical College 3300014607 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.83 26232070 41376 13 0 24 0 SRX822102 0.0 Metagenome 3300031733 *Microbiome Permanent Draft Rhizosphere microbial communities from salt marsh grasses in Alabama, United States Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 DOE Joint Genome Institute (JGI) 3300031733 Metagenome Analysis spades v. 3.12.0 Yes Yes omason@fsu.edu Olivia Mason No Host-associated Plants Rhizosphere Roots Unclassified rhizosphere 30.2619 -88.2383 1632105425 3649984 1048 4 1816 16 SRX5821832 Unrestricted 8.27 Metagenome 3300014488 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Bulk soil microbial communities from Mexico - San Felipe (SF) metaG DOE Joint Genome Institute (JGI) 3300014488 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Environmental Terrestrial Agricultural land Soil Unclassified Soil 21.766 -100.163 1130396649 2843061 1817 121 3217 207 SRX6855690 Unrestricted 5.97 Metagenome 3300056634 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.18W.15 SIP fraction DOE Joint Genome Institute (JGI) 3300056634 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 86358498 169473 46 17 85 35 Unrestricted 11.22 Metagenome 3300020457 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014) CEA Genoscope 3300020457 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -1.8505 -84.6318 1415583977 3565689 571 87 955 144 0.0 Metagenome 3300026541 *Microbiome Permanent Draft Sea bed manganese nodule microbial communities from the Clarion-Clipperton Zone in the eastern Pacific Sea bed manganese nodule microbial communities from Clarion-Clipperton Zone, Pacific Ocean - CNS271 University of Georgia 3300026541 Metagenome Analysis MEGAHIT meta-large v. 1.1.1 released by JGI data releasing policy No Yes matt.church@flbs.umt.edu Matthew Church No Environmental Aquatic Oceanic Marine Sediment Sea bed manganese nodule 13.750028 -116.51336 49399997 59643 14 5 15 5 0.0 Metagenome 3300000199 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 10m DOE Joint Genome Institute (JGI) 3300000199 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.35 -123.29 60312205 147465 58 13 114 19 Unrestricted 0.0 Metagenome 3300047510 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Assiniboine River, Winnipeg, Manitoba, Canada - assiniboineriver_2019_sw_WHONDRS-S19S_0005 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047510 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 49.8687 -97.408 324934754 562614 195 62 338 87 Unrestricted 0.0 Metagenome 3300037391 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 10-14 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037391 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0472 875083798 1700954 305 18 506 30 SRX4415333, SRX8128006 Unrestricted 0.0 Metagenome 3300052690 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_5B2_100218_1439 DOE Joint Genome Institute (JGI) 3300052690 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 2312841517 3556450 624 241 1148 316 Unrestricted 24.85 Metagenome 3300022566 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 3 Selected contigs with viral hallmark genes Autonomous University of Barcelona 3300022566 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 698838 1014 0 0 0 0 0.0 Metagenome 3300059830 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA050b-BCH DOE Joint Genome Institute (JGI) 3300059830 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6792 -83.4776 930810604 2235980 553 53 977 88 Unrestricted 0.0 Metagenome 3300007744 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Stylissa sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina ""control"", st9ic 200bp-25jan2016" University of New South Wales 3300007744 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au, e.botte@aims.gov.au; n.webster@aims.gov.au Nicole Webster, Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Stylissa sp. (marine sponge) -9.828217 150.820517 75624207 150186 34 3 67 6 0.0 Metagenome 3300011178 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - JTO16cm metaG DOE Joint Genome Institute (JGI) 3300011178 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; wswingley@niu.edu Ramunas Stepanauskas; Wesley Swingley No Environmental Aquatic Creek Freshwater Unclassified Freshwater 41.6655 -87.5437 13-14 7660607 19215 14 25 26 45 SRX2526871 Unrestricted 0.0 Metagenome 3300037509 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Biocrust microbial communities from Canyonlands National Park, Utah, United States - Terrestrial sediment B DOE Joint Genome Institute (JGI) 3300037509 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Biocrust Soil Unclassified biocrust 38.715 -109.6908 2020907747 3318507 813 17 1251 32 Unrestricted 19.42 Metagenome 3300006186 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 DOE Joint Genome Institute (JGI) 3300006186 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Host-associated Plants Endosphere Roots Unclassified Populus endosphere 35.8444 -83.9599 2021003872 6639474 1533 70 3051 129 SRX2748494 Unrestricted 0.0 Metagenome 3300013722 *Microbiome Permanent Draft Marine hypoxic microbial communities from the Gulf of Mexico, USA Marine hypoxic microbial communities from the Gulf of Mexico, USA - 2m_Station4_GOM_Metagenome Georgia Institute of Technology 3300013722 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 13928896 36691 20 0 35 1 SRX958293 0.0 Metagenome 3300049741 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 DOE Joint Genome Institute (JGI) 3300049741 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.407926 -82.180036 1752163965 2933234 636 14 1106 27 Unrestricted 14.66 Metagenome 3300025918 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025918 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 42.3948 -85.3738 2806008178 7266257 1524 106 2852 145 SRX2740819 Unrestricted 0.0 Metagenome 3300012860 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - DID2937_E24_FP MG DOE Joint Genome Institute (JGI) 3300012860 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Grasslands Soil Unclassified soil 43.073 -89.4011 125552254 202629 99 1 149 2 SRX3564827 Unrestricted 0.0 Metagenome 3300029813 *Microbiome Permanent Draft Washington Margin Metagenomes Marine sediment microbial communities from Washington margin, Washington, USA - Site 8 Core 34 Marine Biological Laboratory 3300029813 Metagenome Analysis Megahit v. 1.1.1-2 released by JGI data releasing policy No Yes michaelgraw@gmail.com Michael Graw No Environmental Aquatic Cold seeps Marine Sediment marine sediment 47.1844 -125.0055 1.5 610879194 1176645 346 12 592 24 0.0 Metagenome 3300006637 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA DOE Joint Genome Institute (JGI) 3300006637 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 534892440 1458179 410 18 767 28 SRX2853520 Unrestricted 0.0 Metagenome 3300017956 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300017956 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1887392918 4158820 1275 56 2224 86 SRX4072136 Unrestricted 15.48 Metagenome 3300051381 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - ATCcR1C-14 DOE Joint Genome Institute (JGI) 3300051381 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 147478215 233672 124 4 169 4 Unrestricted 167.82 Metagenome 3300028957 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 39_B Beijing Genomics Institute (BGI) 3300028957 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 44697931 52602 32 0 42 0 ERX491137 0.0 Metagenome 3300012572 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100745 University of Pennsylvania 3300012572 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14815920 29694 24 8 40 16 SRX756105 0.0 Metagenome 3300028665 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_3 DOE Joint Genome Institute (JGI) 3300028665 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 529467687 1500855 711 45 1235 72 SRX5281171 Unrestricted 0.0 Metagenome 2189573020 *Microbiome Draft Panchlora sp. gut microbial communities from Gamboa, Panama Panchlora gut microbial communities from Gamboa, Panama - Panchlora_hindgut_metagenome v1 DOE Joint Genome Institute (JGI) 2189573020 Metagenome Analysis Soap denovo, Newbler and minimus released based on JGI ITS No Yes currie@bact.wisc.edu Cameron Currie Yes 28545131 Host-associated Arthropoda: Insects Hindgut Digestive system Unclassified Panchlora sp. gut 9.116667 -79.7 78124425 108897 0 0 1 0 Unrestricted 0.0 Metagenome 3300025045 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-46 (SPAdes) DOE Joint Genome Institute (JGI) 3300025045 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 49.9991 -144.9989 118837228 265490 35 0 51 0 Unrestricted 0.0 Metagenome 3300000513 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Tailings pond microbial communities from Northern Alberta - Syncrude Mildred Lake Settling Basin McGill University 3300000513 Metagenome Analysis No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 57.01116 -111.6 8.69 11176345 20778 26 2 52 1 0.0 Metagenome 3300043174 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from Nevada, United States - Crystal Pool (CP_S1) (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043174 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified Desert spring 36.4202 -116.323 7.4 883377984 1281505 353 6 547 12 SRX9167284 Unrestricted 42.95 Metagenome 3300034356 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152 DOE Joint Genome Institute (JGI) 3300034356 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1181981167 2269403 424 52 649 80 SRX7622277 Unrestricted 14.73 Metagenome 3300048817 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 P3 20-24 DOE Joint Genome Institute (JGI) 3300048817 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3535 19.0473 776372369 1155323 183 10 312 14 Restricted 15.97 Metagenome 3300019728 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLT_2-3_MG DOE Joint Genome Institute (JGI) 3300019728 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 115884482 282859 213 14 429 16 SRX3983362 Unrestricted 3.6 Metagenome 3300025965 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025965 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.000637 -121.624207 100170514 218079 149 0 217 2 SRX7143407 Unrestricted 0.0 Metagenome 3300025657 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC075_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025657 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 37.8 -122.27 465011096 824243 455 6 649 6 SRX2338989 Unrestricted 0.0 Metagenome 3300020339 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000674 (ERX555929-ERR599080) CEA Genoscope 3300020339 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -9.1552 -140.5284 292567602 732499 365 22 518 36 0.0 Metagenome 2100351007 *Microbiome Permanent Draft Freshwater sediment microbial communities from Lake Washington, Seattle, USA, for methane and nitrogen cycles Sediment microbial communities from Lake Washington, Seattle, for Methane and Nitrogen Cycles, sample from flow sorted aerobic plus nitrate DOE Joint Genome Institute (JGI) 2100351007 Metagenome Analysis Newbler released based on JGI ITS No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova Yes 23638358 Environmental Aquatic Lentic Freshwater Sediment Freshwater sediment 47.676484 -122.228394 386453037 1065361 443 10 1085 0 Unrestricted 0.0 Metagenome 3300040651 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 053_R1_022417 University of Maryland 3300040651 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.98553056 25.65063611 2060059 5961 17 2 34 2 0.0 Metagenome 3300010326 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG DOE Joint Genome Institute (JGI) 3300010326 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 792296869 1895860 528 18 976 44 SRX2524972 Unrestricted 0.0 Metagenome 3300014881 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_1Da DOE Joint Genome Institute (JGI) 3300014881 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9229 -106.9516 267349880 618998 254 9 437 10 SRX3780508 Unrestricted 4.75 Metagenome 3300031679 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23 DOE Joint Genome Institute (JGI) 3300031679 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1644495971 3980088 547 8 965 13 SRX5665939 Unrestricted 12.7 Metagenome 3300005377 *Microbiome Permanent Draft Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) - 3_Base_of_chrolophyll_max_130m DOE Joint Genome Institute (JGI) 3300005377 Metagenome Analysis Unkonwn No Yes delong@mit.edu Edward DeLong Yes 16439655 Environmental Aquatic Oceanic Marine Photic zone Marine 22.45 -158.0 6007257 10476 6 0 9 0 0.0 Metagenome 3300061598 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - Jacob462 (version 2) DOE Joint Genome Institute (JGI) 3300061598 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Sand Soil Desert sand -78.0784 164.1115 39772506 130341 111 2 195 4 Unrestricted 159.24 Metagenome 3300028876 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140 DOE Joint Genome Institute (JGI) 3300028876 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92028116 -106.94891893 891063994 2310645 491 18 874 32 SRX5354675 Unrestricted 12.0 Metagenome 3300045451 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Leaf microbial communities from farm grass in Deerfield, Massachusetts, United States - Ryegrass_Phyllosphere_Drought2 DOE Joint Genome Institute (JGI) 3300045451 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 42.4788 -72.5788 616886780 1204035 350 168 464 230 Unrestricted 0.0 Metagenome 3300013663 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100597 University of Pennsylvania 3300013663 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 10225813 20216 4 4 7 7 SRX756157 0.0 Metagenome 3300012258 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00600 Weill Cornell Medical College 3300012258 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.77 -73.95 30980252 60323 29 0 35 0 SRX822567 0.0 Metagenome 3300014149 *Microbiome Permanent Draft In situ water column microbial community from the vent pool of Chocolate Pots hot spring, Yellowstone National Park, Wyoming, USA In situ water column microbial community from the vent pool of Chocolate Pots hot spring, Yellowstone National Park, Wyoming, USA - CP Vent Pool University of Wisconsin, Madison 3300014149 Metagenome Analysis metaSPAdes v3.10, CLC genomic workbench v7.5.1 released by Nathaniel Fortney Yes Yes nwfortney@gmail.com Nathaniel Fortney Yes 30245673 Environmental Aquatic Hot (42-90C) Thermal springs Neutral Anoxic, neutral-pH, Fe/Si-rich hot spring water 44.7101 -110.7413 5.9 308417614 495057 232 4 328 10 0.0 Metagenome 2065487009 *Microbiome Permanent Draft Human fecal microbial communities from Baylor College of Medicine, Texas, USA, mock community Human fecal microbial communities from Baylor College of Medicine, Texas, USA, mock community - Mock Even 2009 Newbler Illumina Baylor College of Medicine 2065487009 Metagenome Analysis released per JGI data release policy No Yes xqin@bcm.tmc.edu Xiang Qin No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 29.7 -95.38 54835114 88392 39 0 73 0 0.0 Metagenome 3300042703 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from Lucky Strike-Montsegur hydrothermal vent, Atlantic Ocean - BazoSym_LS-MS_2_1048G Re-assembly Max Planck Institute for Marine Microbiology 3300042703 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 37.28806 -32.27557 7226567 10358 3 2 6 1 ERX3367192 0.0 Metagenome 3300011581 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00194 Weill Cornell Medical College 3300011581 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.61 -73.99 29690297 37442 23 0 41 0 SRX822173 0.0 Metagenome 3300000753 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 23OCT2008 hypolimnion DOE Joint Genome Institute (JGI) 3300000753 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300064898 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 687 in Warspite, Alberta, Canada - S00JY_0699 Microbiome Insights 3300064898 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 54.0558482 -112.3659904 55965671 82175 42 1 81 1 0.0 Metagenome 3300045260 *Microbiome Permanent Draft Sediment microbial communities from various rivers and their estuaries in the United States Sediment microbial communities from Shark River estuary, Florida, United States - BTRS19_Sengupta_7S DOE Joint Genome Institute (JGI) 3300045260 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sg.aditi@gmail.com Aditi Sengupta No Environmental Aquatic Intertidal zone Marine Estuary sediment 25.3646 -81.0779 367574774 697443 323 16 703 21 Unrestricted 25.2 Metagenome 3300029336 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 029_10_29_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029336 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 236737353 303958 251 0 322 0 0.0 Metagenome 3300055374 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.18C.10 SIP fraction DOE Joint Genome Institute (JGI) 3300055374 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 189890397 370425 146 27 277 40 Unrestricted 12.2 Metagenome 3300000061 *Microbiome Permanent Draft Panchlora sp. gut microbial communities from Gamboa, Panama Panchlora gut microbial communities from Gamboa, Panama - Panchlora_foregut_metagenome v1 DOE Joint Genome Institute (JGI) 3300000061 Metagenome Analysis Soap denovo and minimus released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie Yes 28545131 Host-associated Arthropoda: Insects Hindgut Digestive system Unclassified Panchlora sp. gut 9.116667 -79.7 33152349 53580 20 2 45 1 Unrestricted 0.0 Metagenome 3300009320 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 900m, 250-2.7um, replicate b Georgia Genomics Facility 3300009320 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 1467869037 1604758 469 4 613 5 0.0 Metagenome 3300021213 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Stylissa sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina ""control"", st36ic 200bp-microeukaryotes" University of New South Wales 3300021213 Metagenome Analysis IDBA-UD released by JGI data releasing policy Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Stylissa sp. -9.828217 150.820517 761957 1398 0 0 0 0 0.0 Metagenome 3300017715 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - Lowphox_06 viral metaG DOE Joint Genome Institute (JGI) 3300017715 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -20.1 -70.419 96714205 230446 33 2 57 1 SRX7206580 Unrestricted 25.95 Metagenome 3300024928 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 61_LOW9 (SPAdes) DOE Joint Genome Institute (JGI) 3300024928 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 68058933 98499 21 0 24 0 SRX2720759 Unrestricted 0.0 Metagenome 3300020185 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1 DOE Joint Genome Institute (JGI) 3300020185 Metagenome Analysis spades v. 3.10.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling No Environmental Aquatic Epipelagic Marine Unclassified seawater 54.1841 7.9 1045226142 1848760 469 91 708 154 SRX3989442 Unrestricted 31.86 Metagenome 3300005601 *Microbiome Permanent Draft Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.1 DOE Joint Genome Institute (JGI) 3300005601 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jeremy.rich@maine.edu Jeremy Rich No Environmental Aquatic Coastal Marine Sediment Marine sediment 1532583626 4745787 1336 40 2546 97 SRX2837916 Unrestricted 0.0 Metagenome 7000000696 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159611913 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000696 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 64958820 120750 0 0 0 0 0.0 Metagenome 3300008221 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 DOE Joint Genome Institute (JGI) 3300008221 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -64.45 -64.88 320080682 589879 237 0 338 0 SRX2753843 Unrestricted 0.0 Metagenome 3300005997 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_750_biof (version 2) DOE Joint Genome Institute (JGI) 3300005997 Metagenome Analysis spades v. 3.1.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 379281268 628686 208 17 285 33 SRX2770504, SRX2770505, SRX2770508, SRX2770506, SRX2770507 Unrestricted 0.0 Metagenome 3300017768 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 6 SPOT_SRF_2009-12-23 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017768 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 441690766 1085340 99 25 175 62 SRX7207079, SRX7207078 Unrestricted 0.0 Metagenome 3300031597 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - AG5_SCM DOE Joint Genome Institute (JGI) 3300031597 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified Marine 70.5467 -122.9077 565317463 1128423 412 243 664 446 SRX5797745 Unrestricted 18.05 Metagenome 3300054571 *Microbiome Permanent Draft Soil microbial communities from pasture in Hopland Research and Extension Center, CA, USA Soil viral communities from pasture in Hopland Research and Extension Center, CA, USA - T3-H218O-B library kit 1SPlus DOE Joint Genome Institute (JGI) 3300054571 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes trubl1@llnl.gov Gareth Trubl No Environmental Terrestrial Pasture Soil Unclassified Soil 39.00177 -123.06967 41456553 109532 43 0 96 6 Unrestricted 298.02 Metagenome 3300026781 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - site 3 bottle 8 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026781 Metagenome Analysis spades v. 3.11.1 Yes Yes blumerschuette@oakland.edu; rmkelly@ncsu.edu Sara Blumer-Schuette; Robert Kelly No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6102 -110.4387 17281314 20442 35 0 29 0 SRX2554487 Unrestricted 0.0 Metagenome 3300000401 *Microbiome Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine microbial community from La Parguera, Puerto Rico - BB Mangrove B Liquid DOE Joint Genome Institute (JGI) 3300000401 Metagenome Analysis released based on JGI ITS Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Bioluminescent Bay 17.966667 -67.0 92453987 234083 162 18 300 27 Unrestricted 0.0 Metagenome 3300042451 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2006D11-rr0154 DOE Joint Genome Institute (JGI) 3300042451 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 646090913 961933 217 30 298 46 Unrestricted 18.54 Metagenome 7000000143 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 764224817 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000143 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 5861670 12160 0 0 0 0 SRX025183 0.0 Metagenome 3300015258 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_1Da DOE Joint Genome Institute (JGI) 3300015258 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9232 -106.9513 302115497 707427 221 2 444 6 SRX3780510 Unrestricted 4.55 Metagenome 2040502000 *Microbiome Permanent Draft Fungus garden microbial communities from leaf-cutting ants in Gamboa, Panama Fungus garden microbial communities from Atta colombica in Panama - dump bottom 454 Life Sciences, DOE Joint Genome Institute (JGI) 2040502000 Metagenome Analysis Newbler v. October 2008 No Yes gsuen@wisc.edu Garret Suen Yes 20885794 Environmental Terrestrial Insects nest Nest Fungus garden/Fungus gallery Fungus garden 9.1167 -79.7 482217958 1281334 136 0 290 0 0.0 Metagenome 3300020073 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Xylan, Gen0, Rep 2 DOE Joint Genome Institute (JGI) 3300020073 Metagenome Analysis spades v. 3.10.1 Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4148 -119.8405 113762715 178187 302 3 451 6 SRX3963295 Unrestricted 254.87 Metagenome 3300027216 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1546A-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027216 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2311 -123.8825 104059312 231793 182 29 266 58 SRX2753618 Unrestricted 0.0 Metagenome 3300030090 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_064 - TARA_R100000315 CEA Genoscope 3300030090 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -29.5333 37.9117 254795461 548335 7 2 8 5 0.0 Metagenome 3300029791 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 053_3_11_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029791 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 262658420 355582 243 0 359 0 0.0 Metagenome 3300049581 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 DOE Joint Genome Institute (JGI) 3300049581 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.40849 -82.168434 1869455496 2849910 595 52 896 67 Unrestricted 17.21 Metagenome 3300055372 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BG2-08_D50 (version 3) DOE Joint Genome Institute (JGI) 3300055372 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3634 19.0475 311695279 516764 129 13 174 26 Restricted 0.0 Metagenome 3300042260 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Jordan River, Golan Heights, Israel - seaofgalileej4_2019_sw_WHONDRS-S19S_0058 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300042260 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 32.8993 35.6136 474116825 755347 292 20 469 27 Unrestricted 28.12 Metagenome 3300009475 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS849 no min length Marine Biological Laboratory 3300009475 Metagenome Analysis Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow diffuse flow hydrothermal vent 18.376687 -81.798096 7.13 140096974 765045 72 14 237 27 0.0 Metagenome 3300033886 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd DOE Joint Genome Institute (JGI) 3300033886 Metagenome Analysis spades v. 3.13.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5341 -110.798 394034124 806066 201 3 349 1 SRX7519071 Unrestricted 112.42 Metagenome 3300070727 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Mountain Lake Biological Station, Virginia, USA - MLBS_063-M-20180612-COMP-DNA1 3300070727 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 19228371 60406 60 5 98 5 0.0 Metagenome 3300045095 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_7_B DOE Joint Genome Institute (JGI) 3300045095 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 193136392 229998 110 2 141 1 Unrestricted 73.3 Metagenome 2228664017 *Microbiome Permanent Draft Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - sample Oil_dispersant_biofilm Alabama State University 2228664017 Metagenome Analysis De Novo Roche released per JGI data release policy No Yes panoble@washington.edu Peter A Noble No Environmental Aquatic Oceanic Marine Oil-contaminated Marine 30.15 -88.446 7.8 55458552 152413 98 0 142 0 0.0 Metagenome 3300046708 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 soil DOE Joint Genome Institute (JGI) 3300046708 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.588088 -123.192429 6.64 455490231 827289 250 11 463 19 Unrestricted 17.94 Metagenome 3300005887 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_403 DOE Joint Genome Institute (JGI) 3300005887 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 254762215 847354 415 12 818 22 SRX2564880, SRX2581046 Unrestricted 0.0 Metagenome 3300056632 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.18W.12 SIP fraction DOE Joint Genome Institute (JGI) 3300056632 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 159552882 301341 139 33 208 39 Unrestricted 14.8 Metagenome 3300017555 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - G11-09 University of Michigan 3300017555 Metagenome Analysis ibda-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.39651 -85.40936 11679441 18067 3 0 11 0 0.0 Metagenome 3300034049 *Microbiome Permanent Draft Deception Metagenome Fumarole sediment microbial communities from Fumarole Bay, Deception Island, Antarctica - FBA3 The Brazilian National Council for Scientific and Technological Development (CNPq) 3300034049 Metagenome Analysis IDBA-ud v. 1.1.1 released per Amanda Bendia -- GOLD-1013 No Yes amandagbendia@gmail.com Amanda Bendia No Environmental Aquatic Volcanic Marine Unclassified fumarole sediment -62.96 -60.71 12146641 15146 4 0 4 0 0.0 Metagenome 3300023502 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_74B University of California, Irvine 3300023502 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 143160483 142423 22 0 15 0 0.0 Metagenome 3300043626 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 247-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043626 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.96 -107.0296 468680871 1392306 592 25 1117 57 Unrestricted 6.51 Metagenome 3300034969 *Microbiome Finished Coastal sediment microbial communities from Western Antarctica Coastal sediment microbial communities from Western Antarctica - 8_event31 Megahit 31 Michigan State University 3300034969 Metagenome Analysis Megahit v. 1.1 released by Deric Learman No Yes deric.learman@cmich.edu Deric Learman No Environmental Aquatic Coastal Marine Sediment marine sediment -72.4601 -104.3554 220886347 548329 134 26 298 35 0.0 Metagenome 3300013724 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood/metal -P00366 Weill Cornell Medical College 3300013724 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood/metal 40.64 -74.07 28820111 37449 12 0 16 0 SRX822337 0.0 Metagenome 3300025566 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Bullhead_CordB_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025566 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.003361 -122.468277 204512127 434043 228 3 372 1 SRX7142158 Unrestricted 0.0 Metagenome 3300013351 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100505 University of Pennsylvania 3300013351 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 42418608 89724 32 0 44 0 SRX756493 0.0 Metagenome 3300049178 *Microbiome Permanent Draft Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama - S060_CH13_fluctuating_T4 DOE Joint Genome Institute (JGI) 3300049178 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes njbouskill@lbl.gov Nicholas Bouskill No Environmental Terrestrial Tropical forest Soil Bulk soil Soil 9.17936 -79.8296 687054548 1801510 379 18 676 26 Unrestricted 7.47 Metagenome 3300028019 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU1 DOE Joint Genome Institute (JGI) 3300028019 Metagenome Analysis spades v. 3.11.1 Yes Yes baldrian@biomed.cas.cz; kostelecke.uzeniny@seznam.cz Petr Baldrian; Tomas Vetrovsky No Host-associated Plants Unclassified Roots Unclassified roots 49.043 13.6183 74911221 154864 42 21 63 39 SRX5202274 Unrestricted 50.63 Metagenome 3300048775 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 S2 20-24 DOE Joint Genome Institute (JGI) 3300048775 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3532 19.0475 420980813 570241 103 5 145 3 Restricted 22.29 Metagenome 3300007742 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 763577454 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007742 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 194424929 272680 170 0 331 0 0.0 Metagenome 3300007360 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from the National Institute of Health, USA - subject 158499257, visit 2 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007360 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 218050818 282154 158 0 252 0 0.0 Metagenome 3300022918 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L179-409R-1 DOE Joint Genome Institute (JGI) 3300022918 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 760353071 1505065 578 135 824 199 SRX4801554 Unrestricted 11.35 Metagenome 7000000031 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human right retroauricular crease microbial communities from NIH, USA - visit 2 of subject 763961826 replicate 2 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000031 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 23545710 39970 0 0 0 0 SRX024121, SRX098547 0.0 Metagenome 3300011741 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01332 Weill Cornell Medical College 3300011741 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.83 -73.86 33707529 54536 13 0 23 0 SRX823272 0.0 Metagenome 3300050490 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation DOE Joint Genome Institute (JGI) 3300050490 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Host-associated Plants Endosphere Roots Unclassified Populus endosphere 35.8443 -83.9607 2079136183 5568500 1321 12 2586 31 SRX2748467 0.0 Metagenome 3300034987 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D1105U12 DOE Joint Genome Institute (JGI) 3300034987 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0387 382860464 933018 449 5 828 10 SRX8255999 Unrestricted 5.77 Metagenome 3300012574 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100340 University of Pennsylvania 3300012574 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 18150266 29861 11 6 15 10 SRX756317 0.0 Metagenome 3300033996 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004 DOE Joint Genome Institute (JGI) 3300033996 Metagenome Analysis spades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1442687076 3035680 709 113 1124 180 SRX7621630 Unrestricted 13.63 Metagenome 3300029508 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI012158-36 Beijing Genomics Institute (BGI) 3300029508 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 122192503 143137 82 0 133 0 0.0 Metagenome 3300005869 *Microbiome Permanent Draft Rhizosphere and bulk soil microbial communities from Harvard Forest, USA Rhizosphere microbial communities from Harvard Forest, USA - 3Rhizosphere_NRneg metaG DOE Joint Genome Institute (JGI) 3300005869 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes deangelis@microbio.umass.edu Kristen M DeAngelis PhD, Kristen M. DeAngelis PhD No Host-associated Plants Rhizosphere Roots Soil rhizosphere 42.5502 -72.1737 3918344 16574 19 18 29 25 SRX2718160 Unrestricted 0.0 Metagenome 3300042858 *Microbiome Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring microbial streamer communities from Conch Spring, Yellowstone National Park, USA - C T=80-84 Conch10% (version 3) DOE Joint Genome Institute (JGI) 3300042858 Metagenome Analysis SPADES v. 3.5.0 released based on JGI ITS Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.5564135 -110.8321631 8 14712318 18029 7 0 6 0 Unrestricted 0.0 Metagenome 3300047277 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Yukon River, Alaska, USA - NASQAN2015_010 DOE Joint Genome Institute (JGI) 3300047277 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 61.9336 -162.8829 396427057 855519 299 58 492 58 Unrestricted 47.51 Metagenome 3300050205 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_7B2_100318_0320 DOE Joint Genome Institute (JGI) 3300050205 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 1852889914 2858855 555 184 1161 216 Unrestricted 26.24 Metagenome 3300011953 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00589 Weill Cornell Medical College 3300011953 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.72 -73.99 38009816 56201 21 0 42 0 SRX822556 0.0 Metagenome 3300041728 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_16 MetaG AgResearch, New Zealand, Mosgeil 3300041728 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1494289595 2869412 291 22 1006 35 0.0 Metagenome 3300022657 *Microbiome Permanent Draft Subsurface microbial diversity of groundwater of Koyna-Warna region, Deccan traps, Panchgani, Maharashtra, India Groundwater microbial community from Koyna-Warna region, Deccan traps, Karad, Maharastra, India - BGRL all_kmer Indian Institute of Technology, kharagpur 3300022657 Metagenome Analysis Spades v. 3.10 released by JGI data releasing policy No Yes sarpinaki@gmail.com; sarpinaki@yahoo.com Dr PINAKI SAR; Pinaki Sar No Environmental Aquatic Groundwater Freshwater Aquifer Groundwater 17.297778 74.128333 225971929 382175 123 1 172 7 0.0 Metagenome 3300043172 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_3500m_C2_20cm25cm (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043172 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.6077 -122.6196 620889724 1011393 316 1 465 1 SRX8382852 Unrestricted 34.0 Metagenome 3300033810 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Loreto, Peru - SR_E DOE Joint Genome Institute (JGI) 3300033810 Metagenome Analysis spades v. 3.13.0 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Unclassified peatland -4.5438 -74.6258 204094052 667201 397 7 663 18 SRX7525240 Unrestricted 5.25 Metagenome 3300037484 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_091317_150_160 DOE Joint Genome Institute (JGI) 3300037484 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2398044502 3674838 894 14 1490 20 SRX9164531 Unrestricted 14.34 Metagenome 3300069451 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_026-M-20140618-COMP-DNA1 re-annotation Argonne National Laboratory 3300069451 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 5388977 16701 40 6 95 14 ERX2134027 0.0 Metagenome 3300049194 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - D3_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049194 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 484463326 1120424 508 14 940 26 Unrestricted 0.0 Metagenome 3300003176 *Microbiome Permanent Draft Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland, that are sulfate-reducing Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland - BIC-A1 borehole 3300003176 Metagenome Analysis Ray version 2.3.1, k=31 No Yes rizlan.bernier-latmani@epfl.ch Rizlan Bernier-Latmani Yes 27739431 Environmental Terrestrial Clay Deep subsurface Unclassified Deep subsurface 47.379 7.1648 7.5-8.5 49750184 51299 40 1 19 1 0.0 Metagenome 3300046000 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater viral communities from Lake Mendota, Wisconsin, United States - ME_2020-07-24_15m_Virus_AB DOE Joint Genome Institute (JGI) 3300046000 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 1036934166 2006140 260 15 347 14 Unrestricted 32.01 Metagenome 3300009628 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_16_10 DOE Joint Genome Institute (JGI) 3300009628 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 352323147 680953 259 14 437 33 SRX3003645 Unrestricted 0.0 Metagenome 3300011192 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 8 - S13.2.40.a - transect 2, age 29 years, surface depth) University of Bristol 3300011192 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes EAEloeFadrosh@lbl.gov; maisie.nash@bristol.ac.uk; ama@envs.au.dk Emiley Eloe-Fadrosh; Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 79.15138889 12.25361111 7.5 3947663 11945 22 3 40 9 0.0 Metagenome 3300069260 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Lower Teakettle, Sierra National Forest, California, USA - TEAK_025-M-20210726-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069260 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 36.989997 -119.024514 963915728 2475332 1001 153 1866 222 0.0 Metagenome 3300012077 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ013 MetaG DOE Joint Genome Institute (JGI) 3300012077 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.7095 -74.6634 208818822 319781 108 50 179 109 SRX3539441 Unrestricted 0.0 Metagenome 3300039396 *Microbiome Permanent Draft Terrestrial soil microbial communities from rice fields in China Terrestrial soil microbial communities from rice field in Ya'an Sichuan, China - 47SYA Shanghai Personal Biotechnology Co., Ltd. 3300039396 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes xjzhang68@sjtu.edu.cn Xiaojun Zhang No Environmental Terrestrial Paddy field/soil Soil Unclassified Terrestrial soil 103.12 30.01 3681049872 8119306 1359 6 2630 20 0.0 Metagenome 7000000289 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 159551223 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000289 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 151857691 225044 0 0 0 0 0.0 Metagenome 3300027280 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_48_BLW_10 (SPAdes) DOE Joint Genome Institute (JGI) 3300027280 Metagenome Analysis spades v. 3.11.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 213764895 436450 232 10 317 25 SRX2572619 Unrestricted 0.0 Metagenome 3300044993 *Microbiome Permanent Draft Microbial mat bacterial communities from hot springs in Waikite Valley, Taupo Volcanic Zone, New Zealand Microbial mat bacterial communities from hot spring in Waikite Valley, New Zealand - LMW_ETR_NZ_2018_Waikite_1_1 DOE Joint Genome Institute (JGI) 3300044993 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes LMWARD@post.harvard.edu Lewis Ward No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats microbial mat -38.3276 176.3016 685490793 870422 311 9 404 15 Unrestricted 72.27 Metagenome 3300001497 *Microbiome Permanent Draft Human axilla skin microbial communities from the University of Liverpool, UK Human axilla skin microbial communities from the University of Liverpool, UK - AX08 3300001497 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Host-associated Mammals: Human Skin Integumentary system Axilla/Armpit Human axilla skin 53.3484 -3.009 11469997 22635 30 0 69 0 0.0 Metagenome 3300056973 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F1L_40_42 DOE Joint Genome Institute (JGI) 3300056973 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.95358208 -81.6734609 2183637709 3328086 921 1 1537 0 Unrestricted 13.76 Metagenome 3300023489 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA -- CDI_129B University of California, Irvine 3300023489 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 103091033 101287 9 0 23 0 0.0 Metagenome 2236876022 *Microbiome Permanent Draft Saline water concentrator pond microbial communities from Bras del Port saltern, Santa Pola, Spain Saline water concentrator pond microbial communities from Bras del Port saltern, Spain - DCM GATC-Biotech AG, Konstanz, Germany 2236876022 Metagenome Analysis released per JGI data release policy No Yes abf@us.es Ana Fernandez No Environmental Aquatic Oceanic Marine Unclassified Saline water concentrator pond 38.1875529 -0.6338098 290618382 778444 796 48 1511 84 0.0 Metagenome 3300040527 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_053-O-20170621-COMP-DNA1 Battelle Memorial Institute 3300040527 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 2575704 8000 30 4 41 5 0.0 Metagenome 3300017644 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched backyard soil microbial communities from Emeryville, California, USA - eDNA 5th pass 37_C Kraft BY (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017644 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes JMGladden@lbl.gov John Gladden No Environmental Terrestrial Unclassified Soil Unclassified soil 37.83 -122.29 355932473 568509 321 7 496 15 SRX4809029, SRX4809028 Unrestricted 0.0 Metagenome 3300030501 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - Mg.Sf.e (v2) (version 2) DOE Joint Genome Institute (JGI) 3300030501 Metagenome Analysis spades v. 3.12.0 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.7658 -100.163 1667191862 3467797 526 434 863 720 SRX6855691 Unrestricted 0.0 Metagenome 7000000267 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159611913 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000267 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 22883433 45833 0 0 0 0 0.0 Metagenome 3300041020 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - T4D1 IDBA-UD 60x Baseclear 3300041020 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 104534630 170678 137 11 237 14 0.0 Metagenome 3300008266 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA University of Michigan 3300008266 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7026 -83.2538 8.738 474522837 992152 1 0 1 0 0.0 Metagenome 3300019743 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BLC_3-4_MG DOE Joint Genome Institute (JGI) 3300019743 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 136760413 335233 225 19 432 20 SRX3983358 Unrestricted 3.7 Metagenome 3300025314 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 2 (version 2) DOE Joint Genome Institute (JGI) 3300025314 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 26033198 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 1347786906 2711853 975 8 1769 22 SRX1984090 Unrestricted 0.0 Metagenome 3300052799 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_CL_033D DOE Joint Genome Institute (JGI) 3300052799 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0689 10.4302 413196505 1109848 358 14 694 25 Unrestricted 8.07 Metagenome 3300012598 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100652 University of Pennsylvania 3300012598 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 15363153 39012 20 1 29 1 SRX756442 0.0 Metagenome 3300022312 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Garden Lake, Rottnest Island (WA - Australia) - GL1GP2 JM107 AGRF 3300022312 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.995604 115.536873 23671206 48262 32 0 50 1 0.0 Metagenome 2088090012 *Microbiome Permanent Draft Coastal water and sediment microbial communities from Arctic Ocean, off the coast from Alaska Marine sediment microbial communities from Arctic Ocean, off the coast from Alaska - sample from high methane PC12-236-260cm DOE Joint Genome Institute (JGI) 2088090012 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes kirchman@cms.udel.edu, kirchman@udel.edu David Kirchman No Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Coastal water and sediment 74.0678 -145.54687 191647483 350243 257 21 441 0 Unrestricted 0.0 Metagenome 3300007069 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Dobu ""bubble"", cg4ads" University of New South Wales 3300007069 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Cinachyra sp. (marine sponge) -9.73665 150.867667 75624207 186453 34 3 67 6 0.0 Metagenome 3300017940 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100 DOE Joint Genome Institute (JGI) 3300017940 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 932396028 1761257 556 6 895 16 SRX3959985 Unrestricted 12.39 Metagenome 3300004071 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqB_D2 DOE Joint Genome Institute (JGI) 3300004071 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.209766 -122.033424 685808728 2242763 902 15 2086 24 SRX7142968 Unrestricted 0.0 Metagenome 3300026025 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_103 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026025 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 71916116 185154 141 3 284 7 SRX2564881, SRX2581055 Unrestricted 0.0 Metagenome 3300050232 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Warrenville, Illinois, USA - 81_721_IL_DR_1m_c3_T0_16O DOE Joint Genome Institute (JGI) 3300050232 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 41.84145 -88.2298 1272845245 2102395 444 3 726 4 Restricted 12.5 Metagenome 3300007949 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human right retroauricular crease microbial communities from NIH, USA - visit 2, subject 764083206 replicate 1 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007949 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 77422490 86882 15 5 21 10 SRX024124 0.0 Metagenome 2022920007 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - YNP14 OSP Spring v2 (version 2) DOE Joint Genome Institute (JGI) 2022920007 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23720654, 23755042 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.733473 -110.70007 3.5 12043598 19672 30 0 9 0 Unrestricted 0.0 Metagenome 3300003763 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 DOE Joint Genome Institute (JGI) 3300003763 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 147000372 247995 94 0 158 1 SRX2770670 Unrestricted 0.0 Metagenome 3300038781 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog38 BILS 3300038781 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 2515863 6991 16 0 10 0 ERX1594860 0.0 Metagenome 3300024322 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 68D DOE Joint Genome Institute (JGI) 3300024322 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 249442085 551140 216 36 298 47 SRX4472905 Unrestricted 13.18 Metagenome 3300034340 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Marine sediment microbial communities from Algarve, Portugal - SD01 Molecular Research LP (MR DNA) 3300034340 Metagenome Analysis Metawrap workflow v. 1.0.10 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Environmental Aquatic Oceanic Marine Sediment marine sediment 36.979778 -7.989111 643965 869 3 3 7 2 0.0 Metagenome 3300029142 *Microbiome Permanent Draft Aquariaum water viral communities from Chicago, USA Aquariaum water viral communities from Chicago, USA - Stingray Touch - STA2 Michigan State University 3300029142 Metagenome Analysis released Yes Yes No Environmental Aquatic Unclassified Aquaculture Unclassified Aquarium water 41.87 -87.61 5708866 12982 11 0 16 0 0.0 Metagenome 3300039120 *Microbiome Permanent Draft Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA - pen8 University of Minnesota 3300039120 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic River Freshwater Unclassified Freshwater 44.917867 -93.128967 2601530 5006 5 0 1 0 0.0 Metagenome 3300056605 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.16W.11 SIP fraction DOE Joint Genome Institute (JGI) 3300056605 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 100959322 201011 84 8 134 12 Unrestricted 10.94 Metagenome 3300041583 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Unnamed Boomerang Lake #9 DOE Joint Genome Institute (JGI) 3300041583 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.543 78.1998 284689488 540356 185 50 286 69 SRX10085864 Unrestricted 25.93 Metagenome 3300047659 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BT18-02redo_D0 (version 2) DOE Joint Genome Institute (JGI) 3300047659 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3555 19.0492 224180522 386862 137 10 213 24 Restricted 0.0 Metagenome 3300007087 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 158944319 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007087 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 24025828 31883 20 0 29 0 0.0 Metagenome 3300025521 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D1 (SPAdes) DOE Joint Genome Institute (JGI) 3300025521 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.045666 -121.866516 122316960 281737 129 0 224 2 SRX7142149 Unrestricted 0.0 Metagenome 3300043661 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 353-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043661 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9892 -107.0643 1118213667 2232060 381 46 730 52 Unrestricted 9.5 Metagenome 3300031770 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17 DOE Joint Genome Institute (JGI) 3300031770 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 2102581471 5252864 606 8 1179 22 SRX5818219 Unrestricted 14.73 Metagenome 3300035177 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 6_4.5_N_13_3 DOE Joint Genome Institute (JGI) 3300035177 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1866 -2.2146 1682895909 3638298 357 0 646 1 SRX8232509 Unrestricted 9.76 Metagenome 3300027331 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius tantulus BAHAMAS.1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027331 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 309959257 448466 7 1 14 7 SRX2711948 Unrestricted 0.0 Metagenome 3300045693 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_2_F DOE Joint Genome Institute (JGI) 3300045693 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 141158913 168328 83 3 107 3 Unrestricted 125.95 Metagenome 3300051649 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_CSTR_060 (version 2) DOE Joint Genome Institute (JGI) 3300051649 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 20910370 21807 17 0 17 0 SRX12726528, SRX12726526 Restricted 0.0 Metagenome 3300013405 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100152 University of Pennsylvania 3300013405 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4148464 7300 15 4 42 4 SRX756380 0.0 Metagenome 3300029997 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_3 DOE Joint Genome Institute (JGI) 3300029997 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 698705880 1382934 254 38 377 62 SRX5357465 Unrestricted 12.31 Metagenome 3300011833 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00653 Weill Cornell Medical College 3300011833 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.77 -73.97 43325527 63454 14 0 21 0 SRX822620 0.0 Metagenome 2236876010 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Marine microbial communities from Columbia River, CM, sample from Newport Hydroline, GS310-0p1-Hyp-75m University of South Carolina 2236876010 Metagenome Analysis No Yes mariyasmit@hotmail.com Mariya Smit, Mariya W. Smit No Environmental Aquatic Intertidal zone Marine Unclassified Marine estuarine 44.651 -124.295 212307538 668010 561 8 954 19 0.0 Metagenome 3300070921 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dead Lake, Alabama, USA - DELA_005-M-20160825-COMP-DNA1 3300070921 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 31606287 93418 114 3 212 7 0.0 Metagenome 7000000157 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 1, subject 16040088 replicate 2 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000157 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 20467202 36770 0 0 0 0 SRX024627, SRX024628 0.0 Metagenome 3300007925 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763435843 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007925 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 112115841 163074 104 0 133 0 0.0 Metagenome 3300026049 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026049 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.198971 -122.026955 75591354 204359 221 0 357 1 SRX7187017 Unrestricted 0.0 Metagenome 3300027452 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G09K1-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300027452 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 7011320 23299 62 3 102 5 SRX1991294 Unrestricted 0.0 Metagenome 3300031335 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #374 DOE Joint Genome Institute (JGI) 3300031335 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 366975713 608501 101 27 122 44 SRX5329022 Unrestricted 34.35 Metagenome 3300042938 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2014-rr0379 DOE Joint Genome Institute (JGI) 3300042938 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1005288914 1434945 314 75 401 111 Unrestricted 17.1 Metagenome 3300071139 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_005-M-20190619-COMP-DNA1 3300071139 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 15962845 50174 56 3 105 7 0.0 Metagenome 3300033822 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 5-9 DOE Joint Genome Institute (JGI) 3300033822 Metagenome Analysis spades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 319826364 600366 121 11 173 11 SRX8138101, SRX8138100 Unrestricted 0.0 Metagenome 3300013290 *Microbiome Permanent Draft Stable isotope and metagenomic profiling of a methanogenic naphthalene-degrading enrichment culture Enriched microbial communities from a natural gas condensate-contaminated anoxic aquifer near Ft. Lupton, CO, USA - 13C-labelled, 2 mo incubation University of Calgary 3300013290 Metagenome Analysis SPAdes Genome Assembler released by Courtney Toth Yes Yes lmgieg@ucalgary.ca; courtney.toth@utoronto.ca Lisa Gieg; Courtney Toth No Environmental Terrestrial Aquifer Deep subsurface Unclassified anoxic aquifer 40.3921 -104.7158 68705674 104254 57 0 66 0 0.0 Metagenome 3300026969 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and E2 (3) (SPAdes) DOE Joint Genome Institute (JGI) 3300026969 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 44370768 58796 44 0 47 0 SRX3311624 Unrestricted 0.0 Metagenome 3300017499 *Microbiome Permanent Draft Fecal microbial communities from free-living howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from free-living howler monkeys from Sao Paulo Zoo, Brazil - Ind. 1-3, S3 Center for Advanced Technologies in Genomics, Sao Paulo University 3300017499 Metagenome Analysis SPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 66209846 114314 108 0 106 0 0.0 Metagenome 3300005791 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS907_Anemone_DNA Marine Biological Laboratory 3300005791 Metagenome Analysis Ray v. 2.3.1, minimum contig length 1kb released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com; randerson@carleton.edu; elks@mit.edu Caroline Fortunato, Caroline Fortunato; Rika Anderson; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933231 -130.013645 13538074 19582 3 1 5 1 0.0 Metagenome 3300041012 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - WEM-1_at_6-7_cm Genome Quebec 3300041012 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89896 -73.80984 1227456894 3030723 910 15 2169 19 0.0 Metagenome 7000000706 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159247771 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000706 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 70706240 122968 0 0 0 0 0.0 Metagenome 3300013546 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Human oral microbial communities from various locations - University of British Columbia - SCG29 University of British Columbia 3300013546 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Unclassified Human oral 371151 1054 1 0 5 0 SRX143138 0.0 Metagenome 3300025475 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 415-2 deep-072012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025475 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 213652129 466805 195 19 303 39 SRX4917243 Unrestricted 0.0 Metagenome 3300035203 *Microbiome Permanent Draft Seawater and sediment microbial communities from various locations Seawater microbial communities from eastern tropical North Pacific Ocean - AMALJGI-DNA-3 DOE Joint Genome Institute (JGI) 3300035203 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bbw@princeton.edu Bess Ward No Environmental Aquatic Oceanic Marine Unclassified seawater 18.6893 -104.4164 993951522 2027330 745 39 1408 63 SRX8377301 Unrestricted 21.14 Metagenome 3300026987 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and P2 (2) (SPAdes) DOE Joint Genome Institute (JGI) 3300026987 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 54295741 82159 34 0 49 0 SRX3311647 Unrestricted 0.0 Metagenome 3300013619 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100297 University of Pennsylvania 3300013619 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 5959128 12614 14 0 30 1 SRX756604 0.0 Metagenome 3300038623 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A15_35cm_0M University of Tennessee 3300038623 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 108729750 252212 102 3 225 5 SRX710559 0.0 Metagenome 3300022320 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1BM3 JM114 AGRF 3300022320 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 40660889 72955 26 2 48 1 0.0 Metagenome 3300014533 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 9_12M Beijing Genomics Institute (BGI) 3300014533 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 96976707 115136 44 0 71 3 ERX491319 0.0 Metagenome 3300032342 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0 DOE Joint Genome Institute (JGI) 3300032342 Metagenome Analysis spades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5096 -110.3556 3999085643 8416839 2120 12 3724 18 SRX6380913 Unrestricted 10.54 Metagenome 3300040493 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 052_R1_022417 University of Maryland 3300040493 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 61.01533611 25.66536667 3633328 10386 11 0 18 0 0.0 Metagenome 3300008707 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human palatine tonsils microbial communities from NIH, USA - visit 1, subject 763577454 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008707 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Tonsils Lymphatic system Palatine/Faucial Human 41568732 93701 46 0 85 0 SRX024900 0.0 Metagenome 3300050360 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Rock endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - YNP_Endolithic_1 DOE Joint Genome Institute (JGI) 3300050360 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rock 44.7986 -110.7207 299786566 429005 132 21 158 36 Unrestricted 150.58 Metagenome 3300039828 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_005-M-5-35-20130627-GEN-DNA1 Argonne National Laboratory 3300039828 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 30102635 75001 30 2 58 3 ERX2133980 0.0 Metagenome 3300001523 *Microbiome Permanent Draft Hypersaline microbial communities from Lake Vida, Antarctica Hypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron v3 DOE Joint Genome Institute (JGI) 3300001523 Metagenome Analysis No Yes alison@dri.edu Alison Murray No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline -77.38861 161.931111 138155530 438895 30 17 238 42 SRX3181484 Unrestricted 0.0 Metagenome 3300061115 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIIF3SW PMA-treated Jet Propulsion Laboratory, California Institute of Technology 3300061115 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 8113261 12332 3 1 5 2 SRX3244871, SRX3244860, SRX3808514, SRX3808503 0.0 Metagenome 3300010384 *Microbiome Permanent Draft Soil microbial communities from Bangor area, North Wales, UK enriched with cashew seed oil Soil microbial communities from Bangor area, North Wales, UK enriched with cashew seed oil - week5, replicate 2 Fidelity Systems Inc 3300010384 Metagenome Analysis Phred/Phrap/Consed v. 23.0 released per JGI data release policy Yes Yes stepan.toshchakov@gmail.com Stepan Toshchakov No Engineered Lab enrichment Unclassified Unclassified Unclassified soil 53.24 -4.01 164806877 369609 73 8 134 15 0.0 Metagenome 3300045146 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_125m_2015 DOE Joint Genome Institute (JGI) 3300045146 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 1113564790 1948485 931 9 1553 7 Unrestricted 11.87 Metagenome 3300048039 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - EG-12_D0 (version 2) DOE Joint Genome Institute (JGI) 3300048039 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3533 19.0466 335160836 628850 287 2 520 3 Restricted 0.0 Metagenome 3300004266 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D1 DOE Joint Genome Institute (JGI) 3300004266 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.197227 -122.010124 793250739 2443574 959 21 1945 34 SRX2581001 Unrestricted 0.0 Metagenome 3300040274 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_004-M-20140314-COMP-DNA1 Argonne National Laboratory 3300040274 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 7368080 18825 26 6 56 13 0.0 Metagenome 3300048883 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from Gulf of California, Mexico - CTD-FK190211-14-1990m-0.1 DOE Joint Genome Institute (JGI) 3300048883 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 27.01313 -111.4046 499543625 781784 210 1 318 2 Unrestricted 71.32 Metagenome 3300001104 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O3 DOE Joint Genome Institute (JGI) 3300001104 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 4197826 12635 267 110 398 193 SRX1985673, SRX1985672, SRX2021678 Unrestricted 0.0 Metagenome 3300008071 *Microbiome Permanent Draft Wastewater microbial communities from the domestic sewers Wastewater microbial communities from the domestic sewers in Singapore - Site 1 Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300008071 Metagenome Analysis CLC genomics workbench 8 released per JGI data release policy No Yes erinscm@nus.edu.sg Charmaine Ng No Engineered Wastewater Unclassified Sewage Unclassified wastewater 1.3 103.8 172086532 436195 124 0 320 2 0.0 Metagenome 3300009566 *Microbiome Permanent Draft Methanogenic o-xylene degrading microbial communities from aquifer solids in Pensacola, Florida - enrichment culture X8-AB Methanogenic o-xylene degrading microbial communities from aquifer solids in Pensacola, Florida - enrichment culture X8-AB University of Colorado 3300009566 Metagenome Analysis MEGAHIT released by Karen Rossmassler Yes Yes karen.rossmassler@gmail.com Karen Rossmassler Yes 30968165 Environmental Terrestrial Aquifer Deep subsurface Unclassified aquifer solids 30.703611 -87.369167 274208657 439688 327 0 407 0 0.0 Metagenome 3300024310 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK22 DOE Joint Genome Institute (JGI) 3300024310 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 186750049 502618 294 19 544 28 SRX4547523 Unrestricted 7.26 Metagenome 3300028403 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #401 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028403 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 50782387 82191 16 2 35 1 SRX3296258 Unrestricted 0.0 Metagenome 3300036928 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 P3 10-14 DOE Joint Genome Institute (JGI) 3300036928 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0472 607687863 1063860 218 20 362 29 SRX8138664 Unrestricted 9.17 Metagenome 3300039112 *Microbiome Permanent Draft Serpentinized rock microbial communities from various locations Tropical shrubland soil microbial communities from Costa Cuenca Murcielago, Costa Rica - SE_Spring9 Marine Biological Laboratory 3300039112 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Unclassified Soil Unclassified tropical shrubland soil 10.895439 -85.729417 63987608 104175 51 9 94 13 0.0 Metagenome 3300000587 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 08JUL2008 epilimnion DOE Joint Genome Institute (JGI) 3300000587 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 2088090020 *Microbiome Permanent Draft Rumen microbial communities of musk oxen from Alaska Sample MX_TR1 National Research Council of Canada 2088090020 Metagenome Analysis released per JGI data release policy No Yes robert.forster@agr.gc.ca Robert Forster No Host-associated Mammals Stomach Digestive system Rumen Rumen 64.880776 -147.869984 18320187 27524 850 85 1889 0 0.0 Metagenome 3300029887 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35999 Beijing Genomics Institute (BGI) 3300029887 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 216274212 295872 196 0 272 0 0.0 Metagenome 3300038340 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Natural salt marsh sediment microbial communities from Mersea Island, United Kingdom - S MINM 3A University of York 3300038340 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Natural salt marsh sediment 51.797167 0.920967 67691244 178218 131 5 233 4 0.0 Metagenome 3300038762 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Sweden Activated sludge microbial communities from sewage treatment plant in Sweden - SWESTP5 - Uppsala-surplus 106 University of Gothenburg 3300038762 Metagenome Analysis Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified activated sludge 59.844519 17.659844 171254804 295293 172 12 325 16 0.0 Metagenome 3300011947 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00563 Weill Cornell Medical College 3300011947 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.93 29473137 50956 23 0 39 5 SRX822530 0.0 Metagenome 3300034781 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 31SMC DOE Joint Genome Institute (JGI) 3300034781 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological biocrust 34.7856 -115.66 476875744 1095337 557 20 1038 30 SRX7620446 Unrestricted 10.0 Metagenome 3300049688 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_A_4_drought DOE Joint Genome Institute (JGI) 3300049688 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 328230568 747266 449 56 915 90 Unrestricted 14.17 Metagenome 3300029869 *Microbiome Permanent Draft Soil microbial communities from hillslopes of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 2-1-W_N DOE Joint Genome Institute (JGI) 3300029869 Metagenome Analysis spades v. 3.11.1 Yes Yes laurameredith@email.arizona.edu Laura Meredith No Engineered Artificial ecosystem Soil Mesocosm Unclassified soil 32.5789 -110.8512 56391516 134734 53 0 106 0 SRX5338615 Unrestricted 0.0 Metagenome 3300031228 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57 (version 2) DOE Joint Genome Institute (JGI) 3300031228 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9888 -108.3994 2919355044 6372491 1235 36 2009 64 SRX5783417, SRX5783418 Unrestricted 0.0 Metagenome 3300001080 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_O3 DOE Joint Genome Institute (JGI) 3300001080 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 1443535 4895 84 18 146 26 SRX3311917 Unrestricted 0.0 Metagenome 3300046698 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 S3 60-64 DOE Joint Genome Institute (JGI) 3300046698 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.353292 19.0475 450752944 602539 129 3 162 5 Restricted 27.82 Metagenome 3300033165 *Microbiome Permanent Draft Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_15_04-R3 DOE Joint Genome Institute (JGI) 3300033165 Metagenome Analysis spades v. 3.13.0 Yes Yes ziels@mail.ubc.ca Ryan Ziels No Engineered Bioreactor Unclassified Anaerobic Unclassified sludge 51.9691 5.6654 370207894 584231 419 0 489 0 SRX7542615 Unrestricted 54.54 Metagenome 3300054678 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_1-s30 day 91 DOE Joint Genome Institute (JGI) 3300054678 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 898411816 1218417 89 93 132 124 Unrestricted 30.36 Metagenome 3300000355 *Microbiome Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Heterotroph microbial communities from Hot Lake, Washington, USA - coculture lab enrichment 2 DOE Joint Genome Institute (JGI) 3300000355 Metagenome Analysis released based on JGI ITS Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline mat enrichment 46.349179 -119.281483 62954724 82099 50 0 66 1 Unrestricted 0.0 Metagenome 3300069332 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_020-O-20170731-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069332 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 57700267 174799 98 24 187 26 0.0 Metagenome 3300042305 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Sep2008D10-rr0585 DOE Joint Genome Institute (JGI) 3300042305 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 968847607 1503124 365 33 492 50 Unrestricted 17.73 Metagenome 3300031908 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1 DOE Joint Genome Institute (JGI) 3300031908 Metagenome Analysis spades v. 3.13.0 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Bulk soil soil 39.6475 -79.9369 3525197514 8695255 1997 64 3592 72 SRX5809772 Unrestricted 7.15 Metagenome 3300006124 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH26May08 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006124 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 215603637 619181 230 149 360 246 SRX2565940 Unrestricted 0.0 Metagenome 3300002813 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A1a-10 DOE Joint Genome Institute (JGI) 3300002813 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 61453 197 10 0 23 0 SRX1991102 Unrestricted 0.0 Metagenome 3300043682 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 436-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043682 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9765 -107.064 288884792 818274 423 17 795 29 Unrestricted 8.43 Metagenome 3300000569 *Microbiome Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil v6 (version 6) DOE Joint Genome Institute (JGI) 3300000569 Metagenome Analysis Artifact filter, partition at k=32, assemble with Velvet at k19-45, Minimus2 released based on JGI ITS No Yes janet.jansson@pnnl.gov Janet Jansson Yes 30158906 Environmental Terrestrial Unclassified Soil Grasslands Soil 39.0042816 -77.1012173 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300020223 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_31MAY2016_LD2 MG DOE Joint Genome Institute (JGI) 3300020223 Metagenome Analysis spades v. 3.10.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 39971856 77644 1 9 1 22 SRX3922901 Unrestricted 49.32 Metagenome 3300026897 *Microbiome Permanent Draft Cyanobacterial communities from the Joint Genome Institute, California, USA Cyanobacterial communities from the Joint Genome Institute, California, USA from Joint Genome Institute, California, USA - FECB-24 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026897 Metagenome Analysis spades v. 3.11.1 Yes Yes mhess@ucdavis.edu Matthias Hess No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Cyanobacterial 37.9313884 -122.0239394 97118964 151089 29 1 36 1 SRX7697928 Unrestricted 0.0 Metagenome 3300005508 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV259 DOE Joint Genome Institute (JGI) 3300005508 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 599226425 1505525 648 8 1190 20 SRX2782449 Unrestricted 0.0 Metagenome 3300003686 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater microbial communities from Blank Spring, California, USA - Blank Spring water - 6/17/14 DOE Joint Genome Institute (JGI) 3300003686 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Released by Nikos bc they passed the 6 months embargo date Yes Yes rstepanauskas@bigelow.org, rstepanauskas@bigelow.org; jkjarett@lbl.gov Ramunas Stepanauskas, Ramunas Stepanauskas; Jessica Jarett No Environmental Aquatic Unclassified Thermal springs Unclassified Aquatic 39.03145 -122.432312 7.31 8088323 15904 26 0 41 1 Unrestricted 0.0 Metagenome 3300043515 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-292 Genome Quebec 3300043515 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 54.37048 -101.457133 1273078645 2944469 682 175 1133 352 0.0 Metagenome 3300011231 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01000 Weill Cornell Medical College 3300011231 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.59 -73.79 38111269 69686 29 0 45 0 SRX822962 0.0 Metagenome 3300026275 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-058 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026275 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Permafrost soil 68.6137 -149.3144 260404320 540856 175 0 258 2 SRX2755584 Unrestricted 0.0 Metagenome 3300004901 *Microbiome Permanent Draft Marine and wastewater microbial communities from Korea, with extracellular vesicles Wastewater microbial communities from Nanji, Korea with extracellular vesicles - Nanji-EVs Chunlab, Inc 3300004901 Metagenome Analysis IDBA-1.1.1 released per JGI data release policy No Yes s-jkim@kiost.ac Sang-Jin Kim No Engineered Wastewater Unclassified Unclassified Unclassified Wastewater 37.3132 126.828 63585186 160986 10 0 16 0 0.0 Metagenome 3300036403 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from deep shales in Oklahoma, United States - K-2-A DOE Joint Genome Institute (JGI) 3300036403 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back fracking water 35.812 -98.262 3233917651 4963111 12 107 30 134 SRX8135667 Unrestricted 17.1 Metagenome 3300015168 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4A, Ice margin, adjacent to proglacial lake) University of Bristol 3300015168 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.156854 -50.082619 5.82 180851046 442442 188 12 343 27 0.0 Metagenome 3300037590 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - ARW7_20151124 DOE Joint Genome Institute (JGI) 3300037590 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 224269350 326004 118 17 189 11 SRX9140351 Unrestricted 55.22 Metagenome 3300047311 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 soil DOE Joint Genome Institute (JGI) 3300047311 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.12132 -123.269603 5.19 1086542189 1752461 322 27 504 43 Unrestricted 12.28 Metagenome 3300045827 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_3_F DOE Joint Genome Institute (JGI) 3300045827 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 149841994 182703 95 1 94 2 Unrestricted 106.63 Metagenome 3300026340 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A DOE Joint Genome Institute (JGI) 3300026340 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 123733257 321497 208 20 422 28 SRX4802473 Unrestricted 9.98 Metagenome 3300026762 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026762 Metagenome Analysis spades v. 3.11.1 Yes Yes jim.fredrickson@pnnl.gov; binskeep@montana.edu Jim Fredrickson; William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.7315 -110.7113 3 39045226 76967 23 0 40 0 SRX2753788 Unrestricted 0.0 Metagenome 3300053134 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere DOE Joint Genome Institute (JGI) 3300053134 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.588286 -123.194027 946792369 1845857 297 91 488 145 Unrestricted 12.39 Metagenome 3300027573 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027573 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8898 -106.9077 343573105 764916 311 34 592 55 SRX2754263 Unrestricted 0.0 Metagenome 3300043568 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME05Jun2002-rr0952 DOE Joint Genome Institute (JGI) 3300043568 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 765732689 1181303 255 29 348 44 Unrestricted 25.69 Metagenome 3300034025 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 36SMC DOE Joint Genome Institute (JGI) 3300034025 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological biocrust 34.3778 -117.6098 424447662 951632 469 15 857 19 SRX7620876 Unrestricted 7.81 Metagenome 3300042150 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P19_D5 (version 2) DOE Joint Genome Institute (JGI) 3300042150 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 239952650 340603 78 0 132 0 SRX10014669, SRX10014670 Unrestricted 0.0 Metagenome 3300019757 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_7_MG DOE Joint Genome Institute (JGI) 3300019757 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Microbial mats Freshwater microbial mat 38.7906 -75.1644 265276601 507307 647 59 987 89 SRX3982606 Unrestricted 10.65 Metagenome 3300004221 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 81_HOW10 DOE Joint Genome Institute (JGI) 3300004221 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 52396142 107694 55 2 80 4 SRX2721063 Unrestricted 0.0 Metagenome 3300014864 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231A'_16_10D DOE Joint Genome Institute (JGI) 3300014864 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9225 -106.9515 151256781 355260 252 18 530 41 SRX3780463 Unrestricted 4.67 Metagenome 3300025628 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKH (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025628 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 379168081 735075 339 0 525 1 SRX2746859 Unrestricted 0.0 Metagenome 3300070803 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_008-M-20200721-COMP-DNA1 3300070803 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 3356847 11384 42 2 75 11 0.0 Metagenome 3300028208 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS377 with 3.0UM filter - spades JGI facility at Oak Ridge National Laboratory 3300028208 Metagenome Analysis Spades v. 3.11.1 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 12009148 20941 7 1 13 2 0.0 Metagenome 3300014217 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 172_L3_2014-4-25 San Diego State University 3300014217 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 109154 290 6 5 15 10 0.0 Metagenome 3300013432 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100208 University of Pennsylvania 3300013432 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3105552 9430 9 0 26 0 SRX756691 0.0 Metagenome 3300009314 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 900m, 250-2.7um, replicate a Georgia Genomics Facility 3300009314 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 1067193790 1205375 361 4 454 4 0.0 Metagenome 3300012036 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 2 #698 DOE Joint Genome Institute (JGI) 3300012036 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 279659407 539623 252 43 460 73 SRX3296315 Unrestricted 0.0 Metagenome 3300021975 *Microbiome Permanent Draft Characterization of microbial community from Mariana Back Arc Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Hafa_FS927 _150kmer Marine Biological Laboratory 3300021975 Metagenome Analysis IDBA-UD 1.1.3 Trembath-Reichert et al. ?Active subseafloor microbial communities from Mariana back-arc venting fluids share metabolic strategies across different thermal niches and taxa?, ISMEJ 2019 No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Hydrothermal vent fluids 16.96175748 144.8691905 436682860 858940 491 11 695 12 0.0 Metagenome 3300055008 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_161207.NP2 DOE Joint Genome Institute (JGI) 3300055008 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 1102318520 2479788 585 81 1050 121 Restricted 0.0 Metagenome 3300001788 *Microbiome Permanent Draft Biogas reactor microbial communities from the Max Planck Institute, Germany BioPara_130528DK_S3 3300001788 Metagenome Analysis released by JGI data releasing policy No Yes sneulinger@ifam.uni-kiel.de Sven Neulinger, Sven C. Neulinger No Engineered Solid waste Composting Grass Bioreactor Biogas reactor 192504559 772427 203 17 666 9 0.0 Metagenome 3300020428 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094) CEA Genoscope 3300020428 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 39.3757 19.4167 1182526437 2918464 688 38 1070 88 0.0 Metagenome 3300046674 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere DOE Joint Genome Institute (JGI) 3300046674 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1214 -123.2718 851697182 1414373 348 101 594 125 Unrestricted 17.57 Metagenome 3300070966 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_001-M-20180717-COMP-DNA1 3300070966 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 22867719 69443 58 5 127 13 0.0 Metagenome 3300003137 *Microbiome Permanent Draft Continuous culture Bioreactor microbial community with low C:N ratio inoculated with sediment from German Wadden Sea Continuous culture bioreactor microbial community with low C:N ratio inoculated with sediment from Wadden Sea, Germany - sample 2, day 18 3300003137 Metagenome Analysis MetaVelvet v. 0.3 Made public because these are downloaded from Genbank No Yes mstrous@mpi-bremen.de Marc Strous No Engineered Bioreactor Marine sediment inoculum Continuous culture Unclassified Continuous culture Bioreactor 53.273446 5.347795 17180812 50046 16 0 36 0 0.0 Metagenome 2035918000 *Microbiome Permanent Draft Acromyrmex echinatior fungus garden microbial communities from Gamboa, Panama Acromyrmex echinatior fungus garden microbial communities from Panama DOE Joint Genome Institute (JGI) 2035918000 Metagenome Analysis Newbler Released on Tijana's request (11-25-2014) No Yes gsuen@wisc.edu Garret Suen Yes 25406380 Environmental Terrestrial Insects nest Nest Fungus garden/Fungus gallery Acromyrmex echinatior fungus garden 9.1167 -79.7 61239920 114620 24 0 54 0 0.0 Metagenome 3300011564 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01038 Weill Cornell Medical College 3300011564 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.67 -73.88 27476178 35827 17 0 23 0 SRX823000 0.0 Metagenome 3300000084 *Microbiome Permanent Draft Hot Spring microbial communities from Great Boiling Spring, Nevada Hot spring sediment microbial communities from Great Boiling Spring, Nevada - Cellulolytic enrichment CS 85C v1 DOE Joint Genome Institute (JGI) 3300000084 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS Yes Yes brian.hedlund@unlv.edu Brian P. Hedlund, Brian Hedlund Yes 23555835 Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot Spring 40.67 -119.37 6.37 56055567 92428 23 0 48 0 Unrestricted 0.0 Metagenome 3300037246 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_4000m_C2_20cm25cm DOE Joint Genome Institute (JGI) 3300037246 Metagenome Analysis metaspades v. 3.13.0 Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.1948 -122.0383 1352207121 2231848 599 8 963 10 SRX8383000 Unrestricted 18.56 Metagenome 3300049562 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - MR_050217 DOE Joint Genome Institute (JGI) 3300049562 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Unclassified Soil Grasslands soil 41.878 -89.3434 591215846 1521913 425 18 808 36 Unrestricted 0.0 Metagenome 3300044262 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - MER2-9-5-19 DOE Joint Genome Institute (JGI) 3300044262 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.2247 -120.4877 448948487 1087425 462 47 827 70 Restricted 8.77 Metagenome 3300039466 *Microbiome Permanent Draft Terrestrial soil microbial communities from rice fields in China Terrestrial soil microbial communities from rice field in Benbu, Anhui, China - 13ABB Shanghai Personal Biotechnology Co., Ltd. 3300039466 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes xjzhang68@sjtu.edu.cn Xiaojun Zhang No Environmental Terrestrial Paddy field/soil Soil Unclassified Terrestrial soil 117.57 33.74 2385076701 6120817 1370 17 2564 31 0.0 Metagenome 3300012227 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT436_2 DOE Joint Genome Institute (JGI) 3300012227 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9777 -107.0022 255521793 597168 469 30 945 57 SRX3539344 Unrestricted 0.0 Metagenome 3300060371 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210528_01_05 DOE Joint Genome Institute (JGI) 3300060371 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 728250568 1040280 192 141 259 198 Unrestricted 23.85 Metagenome 3300071052 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_063-M-20200706-COMP-DNA1 3300071052 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 15804003 50840 51 2 83 5 0.0 Metagenome 3300043755 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Para, Brazil - FS41 DOE Joint Genome Institute (JGI) 3300043755 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -3.2623 -54.8932 737873553 1728372 254 9 464 15 Unrestricted 8.9 Metagenome 3300002144 *Microbiome Permanent Draft Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t2BS2 (113f) 3300002144 Metagenome Analysis released by JGI data releasing policy No Yes daniel.herlemann@io-warnemuende.de, daniel.herlemann@emu.ee Daniel Herlemann, Daniel P. Herlemann No Environmental Aquatic Unclassified Unclassified Unclassified Marine 57.305 20.0745 376226636 1323524 216 73 394 86 0.0 Metagenome 3300035669 *Microbiome Permanent Draft Forest soil microbial communities from Eldorado National Forest, California, USA Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_2.2 DOE Joint Genome Institute (JGI) 3300035669 Metagenome Analysis metaspades v. 3.13.0 Yes Yes ndove7@gmail.com Nicholas Dove No Environmental Terrestrial Temperate forest Soil Bulk soil soil 38.783 -120.2781 2040404737 5157003 1539 173 2745 321 SRX8239517 Unrestricted 9.07 Metagenome 3300035136 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0608M02 DOE Joint Genome Institute (JGI) 3300035136 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8962 -97.0386 682343791 1717731 749 5 1285 13 SRX8257430 Unrestricted 5.3 Metagenome 3300005142 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Hot Lake Consortium UCC-L28 DOE Joint Genome Institute (JGI) 3300005142 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 105323945 189715 153 0 228 0 SRX2518461 Unrestricted 0.0 Metagenome 3300001367 *Microbiome Permanent Draft Kakapo fecal microbial communities from Codfish Island, New Zealand Kakapo fecal microbial communities from Codfish Island, New Zealand - Kakapo Chick3 New Zealand Genomics Limited 3300001367 Metagenome Analysis released per JGI data release policy No Yes dwai012@aucklanduni.ac.nz, d.waite1986@gmail.com David Waite No Host-associated Birds Large intestine Digestive system Fecal Kakapo fecal -46.77 167.63 476238603 1948163 5530 19 10626 49 0.0 Metagenome 3300042332 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME11Jul2013-rr0761 DOE Joint Genome Institute (JGI) 3300042332 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 635256145 1032127 265 86 402 134 Unrestricted 16.61 Metagenome 3300012907 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1 DOE Joint Genome Institute (JGI) 3300012907 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 695497014 1796554 681 42 1369 62 SRX3297020 Unrestricted 4.02 Metagenome 3300047524 *Microbiome Permanent Draft Floating fern leaf microbial communities from various locations Floating fern leaf microbial communities from Davie, Florida, United States - USDA_CA DOE Joint Genome Institute (JGI) 3300047524 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dave.armitage@gmail.com David Armitage No Host-associated Plants Phylloplane/Leaf Phyllosphere Endophytes Leaf 26.0827 -80.2407 74260607 80185 26 2 34 5 Unrestricted 285.24 Metagenome 3300056795 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.16W.14 SIP fraction DOE Joint Genome Institute (JGI) 3300056795 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 64622971 130790 47 10 81 36 Unrestricted 12.8 Metagenome 3300021603 *Microbiome Permanent Draft Metagenomes from anaerobic digester of solid waste Granular sludge microbial community from anaerobic digester, University of Toronto, Ontario, Canada - UASBVu03_granules spades University of Toronto 3300021603 Metagenome Analysis SPAdes-3.10.1 Yes Yes elizabeth.edwards@utoronto.ca; camillaln@gmail.com Elizabeth A. Edwards; Camilla Nesb? No Engineered Bioreactor Unclassified Anaerobic Unclassified granular sludge 43.6629 -79.3957 1417055227 3461413 720 2 1245 12 0.0 Metagenome 3300044775 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_180 DOE Joint Genome Institute (JGI) 3300044775 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 501959648 1183575 382 7 699 13 Unrestricted 7.33 Metagenome 3300001016 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP1482 DOE Joint Genome Institute (JGI) 3300001016 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -28.41 179.14 19691981 40800 31 12 53 18 SRX1982557 Unrestricted 0.0 Metagenome 3300050191 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim3 20-24 DOE Joint Genome Institute (JGI) 3300050191 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.352963 19.04747 547791779 767094 146 6 232 11 Restricted 14.29 Metagenome 3300038969 *Microbiome Permanent Draft Marine microbial communities from North Atlantic, Canada Marine microbial communities from North Atlantic, Canada - T12G National Research Council, Canada Plant Biotechnology Institute 3300038969 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 46.431 -48.48 15952568 28789 3 0 7 0 0.0 Metagenome 3300009521 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG DOE Joint Genome Institute (JGI) 3300009521 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes loy@microbial-ecology.net; Michael.Pester@dsmz.de Alexander Loy; Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.1318 11.881 761212601 1415310 262 1 387 2 Unrestricted 0.0 Metagenome 3300040298 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Taiga, AK, USA - HEAL_005-O-20170726-COMP-DNA1 Battelle Memorial Institute 3300040298 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.87569 -149.21334 6050784 17638 21 3 40 7 0.0 Metagenome 3300032068 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21 DOE Joint Genome Institute (JGI) 3300032068 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1543296126 3759943 392 4 638 5 SRX5820235 Unrestricted 12.76 Metagenome 3300038987 *Microbiome Permanent Draft Beach sand microbial communities from Municipal Pensacola Beach, Florida Beach sand microbial communities from Municipal Pensacola Beach, Florida - OS-D Georgia Institute of Technology 3300038987 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Sand Soil Unclassified Beach sand 30.3262 -87.1745 6646890 18066 16 0 20 0 SRX696245 0.0 Metagenome 3300011380 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ020 MetaG DOE Joint Genome Institute (JGI) 3300011380 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.7782 -74.6305 61389912 103007 61 37 136 60 SRX3539457 Unrestricted 0.0 Metagenome 3300026623 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C virus_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026623 Metagenome Analysis spades v. 3.11.1 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.7219 -110.7021 40388647 83815 24 0 40 0 SRX2917369 Unrestricted 0.0 Metagenome 3300051364 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - ATCR1C-21 DOE Joint Genome Institute (JGI) 3300051364 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 139495393 190883 113 4 148 2 Unrestricted 157.27 Metagenome 3300059785 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1550B-02 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059785 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2328 -123.878 201281326 413553 209 13 362 16 SRX2753726 Unrestricted 0.0 Metagenome 3300030469 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from healthy individual in Houston, USA - MG100156 University of Michigan 3300030469 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 29.76 -95.37 24341450 46883 52 0 75 0 0.0 Metagenome 3300010055 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from Cariaco Basin, Caribbean Sea - 26_WHOI_OMZ DOE Joint Genome Institute (JGI) 3300010055 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 10.847 -65.114 192692570 360440 160 0 297 0 SRX3197409, SRX3197410 Unrestricted 0.0 Metagenome 2140918006 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P1 v2 (version 2) DOE Joint Genome Institute (JGI) 2140918006 Metagenome Analysis released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 124057455 213587 43 1 73 0 Unrestricted 0.0 Metagenome 3300035687 *Microbiome Permanent Draft Forest soil microbial communities from Eldorado National Forest, California, USA Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_3.1 DOE Joint Genome Institute (JGI) 3300035687 Metagenome Analysis metaspades v. 3.13.0 Yes Yes ndove7@gmail.com Nicholas Dove No Environmental Terrestrial Temperate forest Soil Bulk soil soil 39.032 -120.4433 2353936446 5613568 1521 161 2685 256 SRX8239518 Unrestricted 8.81 Metagenome 3300001389 *Microbiome Permanent Draft Benzene-degrading bioreactor methanogenic microbial communities from Toronto, Canada Benzene-degrading bioreactor methanogenic microbial communities from Toronto, Canada - k91 assembly 3300001389 Metagenome Analysis ABySS v. 1.3.2 released by JGI data releasing policy No Yes cheryl.washer@utoronto.ca; elizabeth.edwards@utoronto.ca Cheryl Washer; Elizabeth A. Edwards No Engineered Bioremediation Benzene Hydrocarbon Bioreactor Benzene-degrading bioreactor methanogenic 43.66266 -79.3917 9042418 15380 4 0 7 0 0.0 Metagenome 3300056846 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_181010.NP2 DOE Joint Genome Institute (JGI) 3300056846 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 1232061769 2607727 643 69 1039 98 Restricted 13.56 Metagenome 3300009443 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110421 DOE Joint Genome Institute (JGI) 3300009443 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 675283146 1269174 528 97 952 152 SRX2999665 Unrestricted 0.0 Metagenome 3300002808 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A3-12 DOE Joint Genome Institute (JGI) 3300002808 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 409550 1344 35 1 43 4 SRX1991269 Unrestricted 0.0 Metagenome 3300044233 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T84 S DOE Joint Genome Institute (JGI) 3300044233 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7568 -64.3735 322388095 752492 23 0 44 0 Unrestricted 42.76 Metagenome 3300026679 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1094 (SPAdes) DOE Joint Genome Institute (JGI) 3300026679 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 8606135 27614 42 5 93 8 SRX3311883 Unrestricted 0.0 Metagenome 3300014688 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01160 Weill Cornell Medical College 3300014688 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.91 43233522 67082 16 0 24 0 SRX823115 0.0 Metagenome 3300031913 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4 DOE Joint Genome Institute (JGI) 3300031913 Metagenome Analysis spades v. 3.12.0 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Bulk soil soil 39.6475 -79.9369 775920108 2019847 714 14 1359 20 SRX5809461 Unrestricted 8.08 Metagenome 3300045022 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Plains ecozone, Canada - Lake 04-574 Genome Quebec 3300045022 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 67.417758 -133.922557 1006344892 2281181 429 143 697 288 0.0 Metagenome 7000000175 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160319967 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000175 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 108466423 193398 0 0 0 0 0.0 Metagenome 3300042363 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME22Jun2005-rr0822 DOE Joint Genome Institute (JGI) 3300042363 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 501732234 804957 170 41 264 52 Unrestricted 20.47 Metagenome 3300020045 *Microbiome Permanent Draft Freshwater viral communities from Chicago Sanitary Ship Canal, USA Freshwater viral communities from Kaskaskia Canyon in Starved Rock State Park, Illinois, USA - 1 University of Illinois-Urbana Champaign 3300020045 Metagenome Analysis SPADES v3.10.1 released by JGI data releasing policy No Yes wtliu@illinois.edu Wen-Tso Liu No Environmental Aquatic River Freshwater Unclassified Freshwater 41.307262 -88.945061 746589945 1612910 6 0 7 0 0.0 Metagenome 3300064907 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 688 in Beauvallon, Alberta, Canada - S00JY_0536 Microbiome Insights 3300064907 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.394731 -111.1955062 185010646 271141 56 1 108 0 0.0 Metagenome 3300025738 *Microbiome Permanent Draft Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico and Hudson Canyon, USA Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM9C Gulf of Mexico (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025738 Metagenome Analysis spades v. 3.11.1 Yes Yes mcredmond@uncc.edu Molly C. Redmond No Environmental Aquatic Cold seeps Marine Unclassified Methane seep mesocosm 27.37 -90.57 758807392 1151992 514 0 539 0 Unrestricted 0.0 Metagenome 3300037568 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C1-9A DOE Joint Genome Institute (JGI) 3300037568 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 1225665395 3344988 1193 19 2053 48 SRX9166513 Unrestricted 6.63 Metagenome 7000000083 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 823052294 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000083 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 106116893 204480 0 0 0 0 0.0 Metagenome 3300028465 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_15MAY2017_LD1 DOE Joint Genome Institute (JGI) 3300028465 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 21207144 40117 5 19 8 24 SRX5345733 Unrestricted 56.97 Metagenome 3300015190 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Storglaciaren, Tarfala, Sweden (Sample st-4a, rock/ice/stream interface) University of Bristol 3300015190 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.900879 18.43474 6.3 214964286 464766 197 18 296 29 0.0 Metagenome 3300011797 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01377 Weill Cornell Medical College 3300011797 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.63 -74.02 22658336 42595 19 0 33 1 SRX823317 0.0 Metagenome 3300037515 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVT2_Sep_110_v DOE Joint Genome Institute (JGI) 3300037515 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2598912825 3941534 959 21 1478 26 SRX9163270 Unrestricted 13.94 Metagenome 3300028418 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 16D DOE Joint Genome Institute (JGI) 3300028418 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 387429298 786412 225 54 356 96 SRX5171240 Unrestricted 15.6 Metagenome 3300005199 *Microbiome Permanent Draft Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich - 33I-99 University of Cincinnati 3300005199 Metagenome Analysis Velvet v. 0.7.57 released per JGI data release policy No Yes rlamendella@lbl.gov Regina Lamendella No Environmental Aquatic Groundwater Freshwater Contaminated Groundwater 40.0 -74.5 0 0 0 0 0 0 0.0 Metagenome 3300025457 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025457 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 186289127 425182 130 7 225 17 SRX1987666 Unrestricted 0.0 Metagenome 3300043590 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 097-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043590 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9278 -106.9802 369421943 1040069 420 12 725 32 Unrestricted 7.38 Metagenome 3300032090 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22 DOE Joint Genome Institute (JGI) 3300032090 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1383182480 3302930 361 3 708 14 SRX5818047 Unrestricted 12.49 Metagenome 3300005753 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - mega-assembly Marine Biological Laboratory 3300005753 Metagenome Analysis CLC Genomics released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow deep-sea hydrothermal vent 18.375 -81.797 589999552 770870 70 10 86 13 0.0 Metagenome 3300040260 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA Prairie soil microbial communities from Boone County, Iowa, USA - PF15-LM-July2012 Iowa State University 3300040260 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land Prairie soil 42.01375 -93.783837 7837952 23465 41 4 88 2 0.0 Metagenome 3300069527 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Atlantic Neotropical, PR, USA - GUAN_043-M-20161005-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069527 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 17.96955 -66.8687 49292926 141347 73 3 158 3 0.0 Metagenome 3300034189 *Microbiome Finished Biofilm microbial communities from bioreactors in Pennsylvania, USA Biofilm microbial community from low pH Fe oxidizing bioreactors in Pennsylvania, USA - DA_Fe_300r The Pennsylvania State University 3300034189 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy Yes Yes dka9@psu.edu Diana Ayala No Engineered Bioreactor Unclassified Aerobic Unclassified biofilm 40.2498 -78.8489 2.7 57391569 97482 41 10 61 15 0.0 Metagenome 3300005061 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 30 soap2 Center for Advanced Technologies in Genomics, Sao Paulo University 3300005061 Metagenome Analysis SOAPdenovo2 released per PI's request No Yes joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 190791087 489562 14 2 39 11 0.0 Metagenome 3300050374 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BT33-06_D100 (version 3) DOE Joint Genome Institute (JGI) 3300050374 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3555 19.0492 22288690 51072 47 33 84 41 Restricted 0.0 Metagenome 3300008641 *Microbiome Permanent Draft Marine benthic sponge associated microbial communities from Guam, USA GUM007 Lamellodysidea herbacea marine benthic sponge microbial communities from Pago Bay, Guam, USA - GUM7E1 GUM7_sspace_033016a University of California, San Diego, Scripps Institute of Oceanography 3300008641 Metagenome Analysis Celera Assembler v8.3 plus SSPACE-LongRead_v1-1 released per PI No Yes spodell@ucsd.edu Sheila Podell Yes 31088928 Host-associated Porifera Unclassified Unclassified Unclassified Marine benthic 13.416337 144.790192 6231845 6160 1 0 1 0 0.0 Metagenome 3300002401 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 26JUN2009 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002401 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 57572946 146430 117 18 227 37 SRX1987800 Unrestricted 0.0 Metagenome 3300031541 *Microbiome Permanent Draft Cyanobacterial mat microbial communities from Siderastrea siderea from Carrie Bow Caye Field Station, Belize Cyanobacterial mat microbial communities from Siderastrea sidereal surface, the Meso-American Barrier Reef, Belize -- Sid1 University of Maryland 3300031541 Metagenome Analysis metaSPAdes v. 3.12 released by JGI data releasing policy No Yes anyabrown@ufl.edu Anya Brown No Host-associated Invertebrates Unclassified Cnidaria Unclassified cyanobacterial mat from coral surface 16.80288 -88.08213 330701594 670287 257 16 367 56 0.0 Metagenome 3300035218 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2013_500m DOE Joint Genome Institute (JGI) 3300035218 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 50.0 -145.0 651883710 1603596 480 79 789 115 SRX8188382 Unrestricted 15.94 Metagenome 3300040451 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Soaproot Saddle, Pacific Southwest, CA, USA - SOAP_004-M-20180530-COMP-DNA1 Battelle Memorial Institute 3300040451 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.03337 -119.26219 3669852 11838 31 2 53 6 0.0 Metagenome 3300026733 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A1-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026733 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 20309533 68132 78 3 160 3 SRX1991135 Unrestricted 0.0 Metagenome 3300022073 *Microbiome Permanent Draft Deep subsurface rock core microbial communities from Deccan traps, Ukhalu, Maharashtra, India Deep subsurface rock core microbial communities from Deccan traps, Ukhalu, Maharashtra, India - U7_55 trimmed_55 Marine Biological Laboratory 3300022073 Metagenome Analysis Spades 3.11.1 released by JGI data releasing policy No Yes avishekdutta14@gmail.com; psar@hijli.iitkgp.ernet.in Avishek Dutta; Pinaki Sar No Environmental Terrestrial Rock Deep subsurface Unclassified Deep subsurface rock core 17.125867 73.869133 1096347104 2642656 881 124 1420 201 0.0 Metagenome 3300005941 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697 DOE Joint Genome Institute (JGI) 3300005941 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.234 -123.9135 722202593 2018211 767 236 1384 399 SRX2838062 Unrestricted 0.0 Metagenome 3300007826 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 160582958 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007826 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 3763134 6116 4 0 7 0 0.0 Metagenome 3300027830 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic Ocean affecting the dissolved organic carbon pool Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Surface_A/KNORR_S2/LV (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027830 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -38.0018 -44.9985 1037892484 2543350 483 35 802 56 SRX2566789 Unrestricted 0.0 Metagenome 3300013463 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100284 University of Pennsylvania 3300013463 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9379950 24309 14 0 18 0 SRX756617 0.0 Metagenome 3300015326 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_01AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015326 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 189941300 335827 27 132 42 228 SRX3923693 Unrestricted 7.45 Metagenome 3300028811 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149 DOE Joint Genome Institute (JGI) 3300028811 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92045766 -106.94845279 1077979828 2737728 513 15 982 22 SRX5354690 Unrestricted 11.44 Metagenome 3300028537 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 18 Selected contigs with viral hallmark genes 2 Autonomous University of Barcelona 3300028537 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 1098202 1714 0 0 0 0 0.0 Metagenome 3300017536 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS379 with 3.0UM filter JGI facility at Oak Ridge National Laboratory 3300017536 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 19114983 44155 32 9 43 14 0.0 Metagenome 3300056710 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.4C.9 SIP fraction DOE Joint Genome Institute (JGI) 3300056710 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 97362505 182857 87 2 164 4 Unrestricted 11.92 Metagenome 3300000377 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from the University of Liverpool 500pg_IonT_Nextera University of Liverpool 3300000377 Metagenome Analysis released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 0 0 0 0 0 0 0.0 Metagenome 3300006565 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0125m University of Hawaii 3300006565 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 283782291 724731 529 28 784 56 0.0 Metagenome 3300025339 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul07 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025339 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 54024964 128707 57 39 96 55 SRX2565284 Unrestricted 0.0 Metagenome 2038011003 *Microbiome Permanent Draft Coalbed water microbial communities from New Mexico, USA Coalbed microbial communities from New Mexico, USA - water sample 454AllContigs3fna Virginia Polytechnic Institute and State University 2038011003 Metagenome Analysis released per JGI data release policy No Yes biswarup@vt.edu Biswarup Mukhopadhyay No Environmental Aquatic Groundwater Freshwater Unclassified Coalbed water 36.728056 -108.220833 4426770 10783 40 0 95 0 0.0 Metagenome 3300037755 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_051817_105_120_jgi DOE Joint Genome Institute (JGI) 3300037755 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 3254809461 4981181 1056 13 1718 19 SRX9162014 Unrestricted 13.64 Metagenome 3300034167 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082 DOE Joint Genome Institute (JGI) 3300034167 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1319338714 2686542 436 154 656 244 SRX7622048 Unrestricted 16.37 Metagenome 3300054048 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10 re-annotation DOE Joint Genome Institute (JGI) 3300054048 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 1030161781 2015989 440 27 774 36 SRX3960104 0.0 Metagenome 7000000520 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 765620695 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000520 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 2630157 3397 0 0 0 0 SRX024916 0.0 Metagenome 3300027529 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepC_8h DOE Joint Genome Institute (JGI) 3300027529 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 253547379 663354 280 32 445 54 SRX5245180 Unrestricted 11.27 Metagenome 3300007263 *Microbiome Permanent Draft Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia - TJ17 time point Australian Centre for Ecogenomics 3300007263 Metagenome Analysis CLC released per JGI data release policy No Yes crinke@lbl.gov Christian Rinke No Environmental Aquatic Coastal Marine Unclassified marine surface water -34.1192 151.2267 87976032 114164 31 1 30 2 0.0 Metagenome 3300029747 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35838 Beijing Genomics Institute (BGI) 3300029747 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 226180538 294817 194 2 257 2 0.0 Metagenome 3300035413 *Microbiome Permanent Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-2_at_6-7_cm Genome Quebec 3300035413 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89934 -73.72822 380145707 1022784 427 11 988 28 0.0 Metagenome 3300019775 *Microbiome Permanent Draft Metagenomes from benzene-degrading nitrate-reducing cultures Lab enriched sediment microbial communities from hydrocarbon-contaminated retail site, Toronto, Canada - S1, HI.1247_001 Genome Quebec 3300019775 Metagenome Analysis MEGAHIT with sensitive setting 139801 Yes Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Engineered Lab enrichment Anaerobic media Defined media Unclassified enriched sediment 43.6532 -79.3832 163100334 247388 88 0 150 0 0.0 Metagenome 3300001848 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM47, ROCA_DNA265_0.2um_TAP-S_3a 3300001848 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Lotic Freshwater Unclassified Marine plankton -2.484383 -55.0075 141367884 311715 46 14 114 23 0.0 Metagenome 3300044831 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_28BD DOE Joint Genome Institute (JGI) 3300044831 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4324 -106.0309 1064214828 1764629 310 75 550 108 SRX20650039 Unrestricted 15.64 Metagenome 3300023716 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_34A University of California, Irvine 3300023716 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 84983226 84424 10 0 23 0 0.0 Metagenome 3300005237 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG15_big_fil_post_rev_8/21/14_0.20 DOE Joint Genome Institute (JGI) 3300005237 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu, jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield, Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 610540331 1556561 1038 10 1900 35 SRX2725957 Unrestricted 0.0 Metagenome 3300044517 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - Rondonia_Forest_2_A1m DOE Joint Genome Institute (JGI) 3300044517 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.134 -62.889 893120342 2321044 358 11 684 16 Unrestricted 9.09 Metagenome 3300032798 *Microbiome Permanent Draft Lake microbial communities from Canada Sediment microbial communities from the Atlantic Highlands Ecozone, Canada - top sediment 17-067 Genome Quebec 3300032798 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Sediment 48.131057 -68.666779 340610349 878904 416 21 737 48 0.0 Metagenome 3300020279 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000482 (ERX555939-ERR599017) CEA Genoscope 3300020279 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -31.0136 4.6932 323788535 798503 314 54 486 113 0.0 Metagenome 2070309000 *Microbiome Permanent Draft Drinking water microbial communities from Ohio, US, that has been chlorinated or chloraminated Drinking water microbial communities from Ohio, US, that has been chlorinated or chloraminated - sample 11519 454 Life Sciences 2070309000 Metagenome Analysis Newbler released per JGI data release policy No Yes matlib.robin@epamail.epa.gov Robin Matlib No Environmental Aquatic Drinking water Freshwater Unclassified Drinking water 39.8 -84.3 26980114 67651 39 0 79 0 0.0 Metagenome 3300051370 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - HDCR2C-21 DOE Joint Genome Institute (JGI) 3300051370 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 310490749 473256 232 5 328 8 Unrestricted 52.01 Metagenome 3300055561 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.17C.17 SIP fraction DOE Joint Genome Institute (JGI) 3300055561 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 88732670 171479 86 17 159 38 Unrestricted 10.45 Metagenome 3300007609 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG DOE Joint Genome Institute (JGI) 3300007609 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Pond water 37.4958 -122.1331 213553673 522768 66 3 109 3 SRX2523665 Unrestricted 0.0 Metagenome 3300028034 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_2017_08_16 DOE Joint Genome Institute (JGI) 3300028034 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified deep subsurface sediment 39.6017 -79.9761 40946510 56744 42 0 84 0 SRX5246443 Unrestricted 486.98 Metagenome 3300026257 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026257 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart Yes 27487207 Environmental Aquatic Oceanic Marine Unclassified Marine 465367344 988466 304 11 438 16 SRX1877464 Unrestricted 0.0 Metagenome 3300011125 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_4, permeate Toyama Prefectural University 3300011125 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Sediment marine 37.36023 137.9591 82221095 198461 72 2 92 8 0.0 Metagenome 3300041817 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - TR_29_wk_4 DOE Joint Genome Institute (JGI) 3300041817 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9726 -107.062 168412956 478219 288 10 495 14 SRX14809592 Unrestricted 7.72 Metagenome 3300013215 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100470 University of Pennsylvania 3300013215 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 39155758 91328 40 1 52 1 SRX756528 0.0 Metagenome 3300043001 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver small intestine microbial communities from Maple Ridge, British Columbia, Canada - Beaver1Small.Intestine1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043001 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Small intestine Digestive system Unclassified small intestine 49.18 -122.54 70430278 116619 11 4 19 3 SRX8344185 Unrestricted 62.55 Metagenome 3300021957 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D DOE Joint Genome Institute (JGI) 3300021957 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Unclassified Marine Unclassified Estuarine water 37.0966 -122.4216 1365472147 2854944 705 266 1028 428 SRX4052298 Unrestricted 16.78 Metagenome 3300030613 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT92D227 (version 2) DOE Joint Genome Institute (JGI) 3300030613 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9888 -108.3994 1888890241 3960734 1392 7 2269 10 SRX5341361, SRX5341360 Unrestricted 0.0 Metagenome 3300013268 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100683 University of Pennsylvania 3300013268 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 26064726 54334 14 0 25 0 SRX756411 0.0 Metagenome 3300070676 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_001-O-20180920-COMP-DNA1 3300070676 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 83351345 226966 75 30 135 55 0.0 Metagenome 3300069363 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_004-M-20170801-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069363 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 102632408 288610 134 14 253 22 0.0 Metagenome 3300070411 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_045-M-20180718-COMP-DNA1 3300070411 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 16069885 50620 47 3 103 6 0.0 Metagenome 3300027383 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027383 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 215115111 537512 247 15 484 33 SRX2021683, SRX1985414 Unrestricted 0.0 Metagenome 3300012653 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00819 Weill Cornell Medical College 3300012653 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.97 40888662 69906 31 0 39 0 SRX822785 0.0 Metagenome 3300050153 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D10_SEK1_2_to_SEK1 DOE Joint Genome Institute (JGI) 3300050153 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.244 457992742 684342 255 84 392 98 Unrestricted 13.16 Metagenome 3300038679 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Coal bed water microbial communities from the Powder River Basin, Montana, United States - T1YRFG11 DOE Joint Genome Institute (JGI) 3300038679 Metagenome Analysis metaspades v. 3.13.0 Yes Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Aquatic Groundwater Deep subsurface Coalbed methane well water coal bed water 45.4351 -106.3918 905171587 1119068 334 5 458 8 SRX9382707 Unrestricted 23.09 Metagenome 3300011862 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01198 Weill Cornell Medical College 3300011862 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.83 -73.91 40744117 70860 13 0 20 0 SRX823153 0.0 Metagenome 3300047165 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Vasterbotten County, Sweden - Sphagnum balticum 19C_BA_DE DOE Joint Genome Institute (JGI) 3300047165 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.183 19.5578 1408525255 2576920 556 115 856 180 SRX14752509 Unrestricted 8.23 Metagenome 3300015361 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_20JUN2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015361 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 306560690 551381 37 64 53 97 SRX3923148 Unrestricted 10.39 Metagenome 3300011570 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00747 Weill Cornell Medical College 3300011570 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -74.01 27672793 36589 17 0 31 0 SRX822714 0.0 Metagenome 3300044757 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_118 DOE Joint Genome Institute (JGI) 3300044757 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 519928419 1416206 658 19 1290 29 Unrestricted 6.95 Metagenome 3300020312 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX556125-ERR598977) CEA Genoscope 3300020312 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 14.5375 70.0244 233882624 584461 247 5 364 4 0.0 Metagenome 3300029082 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 184_12M Beijing Genomics Institute (BGI) 3300029082 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 108879617 150223 90 0 133 0 ERX490982 0.0 Metagenome 3300055013 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_150902.NP2 DOE Joint Genome Institute (JGI) 3300055013 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 779758485 1788751 552 69 875 140 Restricted 0.0 Metagenome 3300024576 *Microbiome Permanent Draft Marine Fish Microbial Metagenomes Hadal fish gut microbial communities from Kermadec Trench, Pacific Ocean - NK100171 University of California, San Diego, Scripps Institute of Oceanography 3300024576 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton No Host-associated Fish Intestine Digestive system Unclassified fish gut -35.67184667 -178.8832867 1359318 1565 2 1 2 1 0.0 Metagenome 3300001441 *Microbiome Permanent Draft Mangrove swamp biosurfactant microbial communities from Bertioga, Sao Paulo, Brazil Mangrove swamp biosurfactant microbial communities from Bertioga, Sao Paulo, Brazil - Fosmid_F10 3300001441 Metagenome Analysis released by JGI data releasing policy No Yes dfdomingos@uol.com.br Daniela Domingos, Daniela F. Domingos No Environmental Aquatic Oceanic Marine Oil-contaminated sediment Mangrove swamp biosurfactant -23.896944 -46.207778 43995 46 0 0 0 0 0.0 Metagenome 3300067062 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210601_05_05 DOE Joint Genome Institute (JGI) 3300067062 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 515113900 796664 234 67 315 77 Unrestricted 0.0 Metagenome 3300046660 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere DOE Joint Genome Institute (JGI) 3300046660 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5879 -123.1939 1207250132 1849342 335 30 443 43 Unrestricted 20.51 Metagenome 3300043777 *Microbiome Permanent Draft Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA - SWaN 13 years plot 20 DOE Joint Genome Institute (JGI) 3300043777 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes luizdomeignoz@gmail.com Luiz Domeignoz Horta No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 42.303 -72.1228 2501646174 4121800 418 36 680 52 SRX15792988 Unrestricted 12.9 Metagenome 2008193000 *Microbiome Permanent Draft Marine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica Marine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica - Summer DOE Joint Genome Institute (JGI) 2008193000 Metagenome Analysis lucy / pga No Yes alison.murray@dri.edu Alison Murray No Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Marine -64.766667 -64.05 10579509 16071 8 0 12 0 0.0 Metagenome 3300001579 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0740 DOE Joint Genome Institute (JGI) 3300001579 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -31.81 6.84 36663823 92265 68 0 123 0 SRX1982963 Unrestricted 0.0 Metagenome 3300057211 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - LE-18 DOE Joint Genome Institute (JGI) 3300057211 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.827 -83.193 925334522 1894822 494 128 763 181 Unrestricted 30.54 Metagenome 3300003424 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from above oceans and continental USA - SEAC4RS-RF10-012 DOE Joint Genome Institute (JGI) 3300003424 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 2357046 7609 18 6 13 9 Unrestricted 0.0 Metagenome 3300014870 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT560_16_10D DOE Joint Genome Institute (JGI) 3300014870 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9229 -106.9511 167059373 411523 293 12 615 32 SRX3780477 Unrestricted 4.88 Metagenome 3300028213 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS375 with 3.0UM filter - spades JGI facility at Oak Ridge National Laboratory 3300028213 Metagenome Analysis Spades v. 3.11.1 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 19983592 34881 12 5 15 4 0.0 Metagenome 3300070818 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Arizona, USA - SRER_047-M-20170815-COMP-DNA1 3300070818 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 3454949 10975 41 0 67 0 0.0 Metagenome 3300003859 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from the University of Notre Dame, USA, of lakes that contribute to methane emissions Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR DOE Joint Genome Institute (JGI) 3300003859 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes sjones20@nd.edu Stuart Jones No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 41.7 -86.23 450904175 1096291 849 9 1290 17 SRX2576265 Unrestricted 0.0 Metagenome 3300017442 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_03OCT2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017442 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 259408310 495526 97 102 146 145 SRX3927222 Unrestricted 9.32 Metagenome 3300017904 *Microbiome Permanent Draft Marine microbial communities from Caribbean coral reef seawater Marine microbial communities from Caribbean coral reef seawater, Cuba - D. strigosa University of Illinois, Urbana-Champaign 3300017904 Metagenome Analysis MEGAHIT v1.1.1-2-g02102e1 released by JGI data releasing policy No Yes lweber@whoi.edu Laura Weber No Environmental Aquatic Intertidal zone Marine Coral reef seawater 20.77453 -78.91517 2048751 2957 5 7 6 8 0.0 Metagenome 3300014562 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS53_6 University of Hohenheim 3300014562 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 112372844 176013 76 0 123 0 0.0 Metagenome 3300042527 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME09Sep2016-rr0784 DOE Joint Genome Institute (JGI) 3300042527 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 843465092 1354637 382 86 545 115 Unrestricted 17.1 Metagenome 3300025030 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado, USA - Groundwater B1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025030 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 26083755 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.53 -107.78 548620193 1008346 730 3 1129 14 SRX1668031, SRX764824 Unrestricted 0.0 Metagenome 3300036418 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T0 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036418 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 112241786 178218 86 4 89 12 SRX4415313, SRX7705672 Unrestricted 0.0 Metagenome 3300049217 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Western Region, Iceland - Sphagnum magellanicum C1_MAG_ICE DOE Joint Genome Institute (JGI) 3300049217 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 2326855319 3172667 621 181 877 264 SRX14752851 Unrestricted 24.65 Metagenome 3300004879 *Microbiome Permanent Draft Ecklonia radiata associated microbial communities from Long Bay, Malabar Australia Ecklonia radiata associated microbial communities from Long Bay, Malabar Australia - B4 University of New South Wales 3300004879 Metagenome Analysis idba-ud released per JGI data release policy Yes Yes z.qiu@student.unsw.edu.au Zhiguang Qiu No Host-associated Algae Unclassified Unclassified Unclassified Ecklonia radiata associated 28910396 58898 61 19 96 22 0.0 Metagenome 3300023088 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34 DOE Joint Genome Institute (JGI) 3300023088 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0474 561926754 934249 192 6 296 13 SRX4415365, SRX8128067 Unrestricted 0.0 Metagenome 3300003242 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO21-A DOE Joint Genome Institute (JGI) 3300003242 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 532841 1681 26 5 39 7 SRX2575482 Unrestricted 0.0 Metagenome 3300013850 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metalplastic -P01516 Weill Cornell Medical College 3300013850 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface City subway metal/plastic 40.75 -73.99 11022955 15304 17 0 19 0 SRX823392 0.0 Metagenome 3300006050 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014 DOE Joint Genome Institute (JGI) 3300006050 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment watersheds 41.170727 -78.4726 3710796042 12639497 2806 154 5052 281 SRX2839557 Unrestricted 0.0 Metagenome 3300066306 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Mid-Atlantic, VA, USA - BLAN_004-M-20170713-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066306 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Farm Terrestrial soil 39.06026 -78.07164 16663419 49048 57 4 117 12 0.0 Metagenome 3300007861 *Microbiome Permanent Draft Microbial communities from Columbia River Estuary, Oregon, USA Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1372B_3um Oregon State University 3300007861 Metagenome Analysis megahit released per JGI data release policy Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Coastal Marine Unclassified estuary water 46.234 -123.9163 250318007 533420 347 174 595 267 0.0 Metagenome 3300007147 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Stylissa sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina ""control"", st8U" University of New South Wales 3300007147 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Stylissa sp. (marine sponge) -9.752083 150.854133 135510185 333689 27 7 34 14 0.0 Metagenome 3300070865 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_008-M-20170802-COMP-DNA1 3300070865 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 21294039 66184 58 1 118 4 0.0 Metagenome 3300026092 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_O2min_ad_571m_LV (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026092 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 266339944 623064 304 26 504 27 SRX2779448 Unrestricted 0.0 Metagenome 3300026189 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF84A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026189 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 178909855 463503 166 181 292 344 SRX2781885 Unrestricted 0.0 Metagenome 3300002355 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 20APR2010 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002355 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 21641257 50223 44 41 72 57 SRX1988281 Unrestricted 0.0 Metagenome 3300040305 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_009-M-4-7-20140910-GEN-DNA1 Argonne National Laboratory 3300040305 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 5899229 18261 28 6 44 10 ERX2133947 0.0 Metagenome 3300048831 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Sediment microbial communities from freshwater Prado Wetlands in Corona, California, USA - ZJ_Prado_199 DOE Joint Genome Institute (JGI) 3300048831 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Wetlands Freshwater Sediment Sediment 33.919031 -117.617686 754210676 1234270 304 42 515 53 Unrestricted 28.98 Metagenome 3300059829 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA024-TGU DOE Joint Genome Institute (JGI) 3300059829 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6772 -83.4783 528654240 1350521 311 34 652 53 Unrestricted 0.0 Metagenome 3300002569 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska, USA - Barrow Graham LP Ref core NGADG0011-212 DOE Joint Genome Institute (JGI) 3300002569 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.29053 -156.788654 402141283 875591 345 4 616 5 SRX1990910 Unrestricted 0.0 Metagenome 3300045558 *Microbiome Draft Lake microbial communities from Canada Lake sediment microbial communities from the Boreal Shield ecozone, Canada - Lake 06-270 Genome Quebec 3300045558 Metagenome Analysis MEGAHIT v1.0.6 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Lake Sediment 52.413575 -56.01578 134552859 185790 45 4 95 5 0.0 Metagenome 3300014178 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Vietnam to Iowa, USA - VN12 Iowa State University 3300014178 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 4780426 8338 0 1 0 0 SRX1150315 0.0 Metagenome 3300022223 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_8_1 DOE Joint Genome Institute (JGI) 3300022223 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Sediment Marine Unclassified sediment 38.03 -122.15 1227676686 2347657 919 39 1571 59 SRX4053576 Unrestricted 9.9 Metagenome 3300059454 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.18W.17 SIP fraction DOE Joint Genome Institute (JGI) 3300059454 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 182493755 318058 124 38 218 67 Unrestricted 0.0 Metagenome 3300049371 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MC5 DOE Joint Genome Institute (JGI) 3300049371 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 58858316 156354 199 3 368 7 Unrestricted 27.24 Metagenome 3300025443 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 415-1 shallow-092012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025443 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 164989706 371572 196 7 340 15 SRX1987671 Unrestricted 0.0 Metagenome 3300020196 *Microbiome Permanent Draft Freshwater microbial communities from Lake Tanganyika, Tanzania Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015031 Kigoma Deep Cast 0m DOE Joint Genome Institute (JGI) 3300020196 Metagenome Analysis spades v. 3.10.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater lake -4.9054 29.4853 1097603376 1976802 400 72 622 79 SRX3984086 Unrestricted 63.25 Metagenome 3300033746 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from gas well in Marcellus Shale, West Virginia, United States - MIP3H_02032016 Ohio State University 3300033746 Metagenome Analysis IDBA-UD v. 1.1.1 No Yes rebdaly@colostate.edu Rebecca Daly No Environmental Terrestrial Fracking water Deep subsurface Unclassified Fracking Water 39.6017 -79.9761 11855729 11621 3 0 3 0 0.0 Metagenome 3300050263 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_17 DOE Joint Genome Institute (JGI) 3300050263 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.875 160.74 542951072 913883 135 36 168 48 SRX18235900 Restricted 29.99 Metagenome 7000000685 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 765560005 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000685 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 1924040 4105 0 0 0 0 SRX024094 0.0 Metagenome 3300029513 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005377-43 Beijing Genomics Institute (BGI) 3300029513 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 147285683 188440 120 0 138 0 0.0 Metagenome 3300011991 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A34_65cm_12M University of Tennessee 3300011991 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 206403036 419169 53 1 125 5 SRX710605 0.0 Metagenome 3300006611 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS903_Marker113_DNA 3300006611 Metagenome Analysis CLC genomics wb7 released by Caroline Fortunato No Yes cfortunato@mbl.edu, cfortunato@gmail.com; elks@mit.edu Caroline Fortunato, Caroline Fortunato; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.92274 -129.988104 193269043 494825 168 8 333 15 0.0 Metagenome 3300022903 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L001-104B-6 DOE Joint Genome Institute (JGI) 3300022903 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 400403789 851025 431 52 802 105 SRX4801092 Unrestricted 10.29 Metagenome 3300066288 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_015-O-20170620-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066288 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 17781646 56356 87 23 156 49 0.0 Metagenome 3300011607 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00590 Weill Cornell Medical College 3300011607 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.72 -73.99 29396745 40315 19 0 27 0 SRX822557 0.0 Metagenome 3300012560 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100209 University of Pennsylvania 3300012560 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12007714 25391 12 0 13 0 SRX756690 0.0 Metagenome 3300011488 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00996 Weill Cornell Medical College 3300011488 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.59 -73.77 17470785 27616 9 0 14 0 SRX822958 0.0 Metagenome 3300013158 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100759 University of Pennsylvania 3300013158 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 20485190 46231 36 7 64 16 SRX756091 0.0 Metagenome 3300006476 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2 of subject 763759525 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006476 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 130241267 171276 121 0 177 2 0.0 Metagenome 3300027950 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S3_40_50 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027950 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228508 -119.2716818 130630568 379624 186 2 362 7 SRX2523176 Unrestricted 0.0 Metagenome 3300031356 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-90 DOE Joint Genome Institute (JGI) 3300031356 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.759 -70.891 442296592 830997 369 6 624 8 SRX5358762 Unrestricted 13.38 Metagenome 3300037809 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI149_2019_jan_120m DOE Joint Genome Institute (JGI) 3300037809 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 292747323 599699 209 17 352 31 SRX9402686 Unrestricted 20.74 Metagenome 3300007992 *Microbiome Permanent Draft Microbial communities from Columbia River Estuary, Oregon, USA Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2um Oregon State University 3300007992 Metagenome Analysis megahit released per JGI data release policy Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Coastal Marine Unclassified estuary water 46.235 -123.9123 798100004 1696501 725 92 1160 164 0.0 Metagenome 3300022866 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #369 DOE Joint Genome Institute (JGI) 3300022866 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 227490836 406632 129 15 197 28 SRX4396778 Unrestricted 16.45 Metagenome 3300009457 *Microbiome Permanent Draft Host-associated microbial communities of aphids from plants in several locations around USA Microbial communities of aphids from Cornus stolonifera in Ithaca, NY, USA - Anoecia oenotherae NM10041110_01 seqcov University of Texas, Austin 3300009457 Metagenome Analysis CLC Genomics released per JGI data release policy Yes Yes becky.chong@utexas.edu Rebecca Chong No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Cornus 42.445513 -76.499706 174988809 94458 3 1 3 1 0.0 Metagenome 3300029199 *Microbiome Permanent Draft Deep subsurface microbial communities from shale gas basins in Pennsylvania, USA Deep subsurface microbial communities from shale gas basins in Pennsylvania, USA - 1_Day0 Marine Biological Laboratory 3300029199 Metagenome Analysis released Yes Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Unclassified Deep subsurface Unclassified Deep subsurface 39.898 -79.976 90030480 136351 63 5 85 3 0.0 Metagenome 3300026167 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_B_D1_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026167 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4968 -122.1333 423177540 831373 442 2 652 3 SRX2523445 Unrestricted 0.0 Metagenome 3300026841 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A3a-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300026841 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 39726773 126658 134 4 282 2 SRX1991107 Unrestricted 0.0 Metagenome 3300043484 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 034-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043484 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9218 -106.9537 332061159 947024 481 25 919 41 Unrestricted 7.47 Metagenome 3300013393 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100158 University of Pennsylvania 3300013393 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 1063392 2934 3 5 5 6 SRX756374 0.0 Metagenome 3300069298 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Abby Road, Pacific Northwest, WA, USA - ABBY_063-M-20170606-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069298 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.76243 -122.33033 63779616 194484 108 4 206 14 0.0 Metagenome 3300008135 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764224817 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008135 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 128194967 208547 104 1 132 0 0.0 Metagenome 3300045086 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Para, Brazil - F21 DOE Joint Genome Institute (JGI) 3300045086 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -2.8553 -54.9582 633658582 1478427 263 14 509 22 Unrestricted 10.06 Metagenome 3300046713 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 soil DOE Joint Genome Institute (JGI) 3300046713 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.120936 -123.269747 5.52 855125243 1401464 301 29 520 46 Unrestricted 12.32 Metagenome 3300048757 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River, Colorado, USA - Glucose_Long DOE Joint Genome Institute (JGI) 3300048757 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 138299211 335981 260 28 444 42 Restricted 12.75 Metagenome 3300027654 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027654 Metagenome Analysis spades v. 3.11.1 Yes Yes cpan@ou.edu Chongle Pan No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 9.1086 -79.8436 368915915 965140 201 4 358 16 SRX2779543 Unrestricted 0.0 Metagenome 3300029941 *Microbiome Permanent Draft Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - effluent_20120727 University of Hong Kong 3300029941 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Drinking water Freshwater Unclassified Aquatic 9825819 15639 7 14 20 19 SRX246992 0.0 Metagenome 3300011881 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00190 Weill Cornell Medical College 3300011881 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.63 -73.99 51484771 75988 16 0 32 0 SRX822169 0.0 Metagenome 3300042274 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA MBR feed microbial communities from membrane bioreactor in Denver, Colorado, USA - FD_D194 DOE Joint Genome Institute (JGI) 3300042274 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Wastewater Mine water Industrial wastewater Produced water MBR feed 39.7823 -104.9101 561945580 807261 374 3 543 4 Unrestricted 21.52 Metagenome 3300071006 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_005-M-20200711-COMP-DNA1 3300071006 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 55282434 159255 191 3 380 5 0.0 Metagenome 3300045765 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - G3-R1-B DOE Joint Genome Institute (JGI) 3300045765 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3549 19.0438 338324293 809381 330 11 555 24 Unrestricted 6.19 Metagenome 3300029753 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Indian Ocean - SRH3 Michigan State University 3300029753 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 1.26600833 103.8333333 66956933 191807 53 1 124 15 0.0 Metagenome 3300053119 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere DOE Joint Genome Institute (JGI) 3300053119 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.120814 -123.269165 469925656 862438 176 39 266 59 Unrestricted 16.26 Metagenome 3300048438 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_120725.NP1 DOE Joint Genome Institute (JGI) 3300048438 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 692914816 1568439 492 67 709 125 Unrestricted 13.67 Metagenome 3300020320 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B000000441 (ERX556072-ERR598990) CEA Genoscope 3300020320 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -35.2528 26.317 246131951 635448 364 29 576 64 0.0 Metagenome 3300028576 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant10 DOE Joint Genome Institute (JGI) 3300028576 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1150727 -123.147 874085109 1535823 863 12 1245 21 SRX5248052 Unrestricted 35.27 Metagenome 3300039054 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Indian Ocean - SMH3 Michigan State University 3300039054 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 1.26600833 103.8333333 31565837 95221 10 4 31 6 0.0 Metagenome 3300029061 *Microbiome Permanent Draft Utah desert microbiome from environmental samples near Hanksville, Utah, USA Rock biofilm microbial communities from Utah desert near Hanksville, Utah, USA - E33_001 McGill University 3300029061 Metagenome Analysis canu v. 1.7 released by Catherine Maggiori No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Terrestrial Unclassified Soil Desert Rock biofilm 38.41714146 -110.78530232 1217572 3336 2 0 2 0 0.0 Metagenome 3300009339 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 103m, 2.7-0.2um, replicate a Georgia Genomics Facility 3300009339 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 390685450 516439 236 4 316 10 0.0 Metagenome 3300022675 *Microbiome Permanent Draft Carpinteria Salt Marsh Metagenomes 2014 to 2017 Marine microbialite microbial communities from marsh intertidal zone in Carpinteria, CA, United States - T2 University of California, Irvine 3300022675 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Aquatic Intertidal zone Marine Microbialites Microbialites 34.401 -119.534 25629434 25286 10 1 12 1 0.0 Metagenome 3300014581 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01339 Weill Cornell Medical College 3300014581 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.83 -73.84 8400287 14056 9 0 17 0 SRX823279 0.0 Metagenome 3300033985 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from deep shales in Oklahoma, United States - M1-7-3 DOE Joint Genome Institute (JGI) 3300033985 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back fracking water 35.784 -98.26 156479708 239177 188 0 263 0 SRX7524902 Unrestricted 235.16 Metagenome 3300048106 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_110309.NP1 DOE Joint Genome Institute (JGI) 3300048106 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 491054452 1078715 371 48 568 86 Unrestricted 14.53 Metagenome 3300001140 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O3 DOE Joint Genome Institute (JGI) 3300001140 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 15948097 52794 198 78 298 141 SRX3311939 Unrestricted 0.0 Metagenome 3300005747 *Microbiome Permanent Draft Microbial degradation of oil Seawater microbial communities from Vineyard Sound, MA, USA - control T14 University of Wisconsin, Madison 3300005747 Metagenome Analysis velvet released per JGI data release policy No Yes rsimiste@haverford.edu, rlsimister@gmail.com rachel simister, Rachel Simister No Environmental Aquatic Unclassified Marine Unclassified marine 41.4417 -70.7744 242291672 467158 375 1 469 0 0.0 Metagenome 3300007882 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 158883629 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007882 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 5475029 12291 5 0 11 0 0.0 Metagenome 3300028395 *Microbiome Permanent Draft Laboratory-enriched microbial communities from a contaminated site in Ontario, Canada - KB-1 12DCA/M_2008_UT Laboratory-enriched microbial communities from a contaminated site in Ontario, Canada - KB-1 12DCA/M_2008_UT McGill University 3300028395 Metagenome Analysis ABySS v. 2.0.2 released by JGI data releasing policy Yes Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Engineered Bioremediation Unclassified Unclassified Unclassified enrichment culture 43.65699737 -79.39033177 7759510 8605 8 0 14 0 0.0 Metagenome 3300038304 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI151_2019_mar_135m DOE Joint Genome Institute (JGI) 3300038304 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 354236949 728676 234 11 381 20 SRX9402727 Unrestricted 13.39 Metagenome 3300011149 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00511 Weill Cornell Medical College 3300011149 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.89 -73.85 15864895 28599 14 1 16 1 SRX822480 0.0 Metagenome 3300045010 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_50_2015 DOE Joint Genome Institute (JGI) 3300045010 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 424792881 799037 253 39 459 68 Unrestricted 32.85 Metagenome 3300056663 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.20C.12 SIP fraction DOE Joint Genome Institute (JGI) 3300056663 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 135387269 272354 110 46 172 63 Unrestricted 9.69 Metagenome 3300070637 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_006-O-20180730-COMP-DNA1 3300070637 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 71476699 195322 153 13 331 20 0.0 Metagenome 3300027406 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_07_M0_10 (SPAdes) DOE Joint Genome Institute (JGI) 3300027406 Metagenome Analysis spades v. 3.11.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 264471366 546500 325 53 471 75 SRX2570687 Unrestricted 0.0 Metagenome 3300021324 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS4 DOE Joint Genome Institute (JGI) 3300021324 Metagenome Analysis spades v. 3.11.1-check Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Host-associated Plants Nodule Roots Unclassified root nodules 34.06 -118.44 483724529 440637 43 100 47 169 SRX4051812 Unrestricted 102.93 Metagenome 3300018407 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 3, Penicillin and Streptomycin DOE Joint Genome Institute (JGI) 3300018407 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4148 -119.8405 696116487 1139086 983 2381 1584 4407 SRX3963292 Unrestricted 46.29 Metagenome 3300031764 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27 DOE Joint Genome Institute (JGI) 3300031764 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1066543341 2563357 366 4 575 12 SRX5820067 Unrestricted 11.06 Metagenome 3300060407 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210606_10_21 DOE Joint Genome Institute (JGI) 3300060407 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 743951728 1071681 313 206 417 272 Unrestricted 30.23 Metagenome 3300000211 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 53 01/11/11 135m DOE Joint Genome Institute (JGI) 3300000211 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 107300597 207017 65 1 142 2 Unrestricted 0.0 Metagenome 3300013930 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00712 Weill Cornell Medical College 3300013930 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.88 -73.9 23592451 38792 18 0 24 0 SRX822679 0.0 Metagenome 3300012055 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Florida, USA - TSFL051 MetaG DOE Joint Genome Institute (JGI) 3300012055 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 27.6231 -81.8092 58077192 93912 21 194 27 314 SRX3539523 Unrestricted 0.0 Metagenome 3300021063 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos D4 DOE Joint Genome Institute (JGI) 3300021063 Metagenome Analysis spades v. 3.10.1 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Deep subsurface sediment 38.96 -106.99 285530536 771572 373 0 629 3 SRX4003259 Unrestricted 21.85 Metagenome 3300022821 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #801 DOE Joint Genome Institute (JGI) 3300022821 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 119795036 250122 64 0 102 0 SRX4397185 Unrestricted 20.92 Metagenome 3300030015 *Microbiome Permanent Draft Processed tobacco microbial communities from Sudan, Africa Processed tobacco microbial communities from Sudan, Africa Reanalysis_post_database_update Centers for Disease Control and Prevention (CDC), USA 3300030015 Metagenome Analysis SPADES_Meta v. 3.10 released by Tyx Yes Yes wyu3@cdc.gov Robert E. Tyx No Engineered Food production Unclassified Unclassified Unclassified Processed tobacco 15.6281 32.538 96735293 123963 87 4 108 7 0.0 Metagenome 3300008102 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 404239096 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008102 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 133971712 231890 82 0 126 0 0.0 Metagenome 3300039385 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 238_B Beijing Genomics Institute (BGI) 3300039385 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 8302604 7829 2 0 3 0 ERX491013 0.0 Metagenome 3300042298 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME22Aug2014-rr0443 DOE Joint Genome Institute (JGI) 3300042298 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1311620744 2023166 432 78 632 113 Unrestricted 15.16 Metagenome 3300035009 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Aphanocapsa sp. GSE-SYN-MK-11-07L and co-occurring heterotrophs from rock surface from Grand Staircase Escalante National Monument, Utah, United States - 20181109_4A DOE Joint Genome Institute (JGI) 3300035009 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Rock surface 37.8291 -111.42 10907296 11214 3 1 4 1 SRX8239030 Unrestricted 721.35 Metagenome 3300050147 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_SEK2_4_to_RHK2 DOE Joint Genome Institute (JGI) 3300050147 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.153 -124.211 521947419 890133 214 101 365 129 Unrestricted 14.46 Metagenome 3300030068 *Microbiome Permanent Draft Comammox microbial communities from various environments and locations in Europe Activated sludge microbial communities from Sewage Treatment Plant in Aalborg, Denmark - MBR_MBR Aalborg University 3300030068 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified Activated sludge 57.049957 9.865377 11828975 18043 11 0 8 0 0.0 Metagenome 3300019883 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - H2a2 DOE Joint Genome Institute (JGI) 3300019883 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9866 -107.0007 280313518 580582 203 21 368 43 SRX3958450, SRX3958451 Unrestricted 0.0 Metagenome 3300012647 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100618 University of Pennsylvania 3300012647 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 26195613 62560 21 1 32 4 SRX756476 0.0 Metagenome 3300036576 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C6-7B DOE Joint Genome Institute (JGI) 3300036576 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 217387938 651578 353 8 640 13 SRX8806098 Unrestricted 5.16 Metagenome 3300029237 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021246-166 Beijing Genomics Institute (BGI) 3300029237 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 171327871 227343 134 2 206 4 0.0 Metagenome 3300027545 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027545 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 283666047 599970 147 34 275 56 SRX3312025 Unrestricted 0.0 Metagenome 3300024465 *Microbiome Permanent Draft Permafrost microbial communities from glacier foreland in Svalbard, Norway Permafrost microbial communities from glacier foreland in Svalbard, Norway - ML62 KOREA POLAR RESEARCH INSTITUTE 3300024465 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes sarbjeet.niraula@mavs.uta.edu Sarbjeet Niraula No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 78.90344222 12.07343136 7.9 3226748 9875 60 11 127 11 0.0 Metagenome 3300039557 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_007-O-20170612-COMP-DNA1 Battelle Memorial Institute 3300039557 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 131174801 337261 213 37 404 55 0.0 Metagenome 3300007799 *Microbiome Permanent Draft Freshwater microbial communities from lake liftoff mats and glacier meltwater in Antarctica Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-06 DOE Joint Genome Institute (JGI) 3300007799 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes slonczewski@kenyon.edu Joan Slonczewski No Environmental Aquatic Ice Freshwater Liftoff microbial mat Freshwater -77.605 163.163 2074936726 3760915 1087 42 1572 65 SRX2753505 Unrestricted 0.0 Metagenome 3300026243 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from above oceans and continental USA - SEAC4RS-RF10-011 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026243 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 15429143 50610 49 7 66 18 Unrestricted 0.0 Metagenome 3300010227 *Microbiome Permanent Draft Soil microbial communities from Bangor area, North Wales, UK enriched with cashew seed oil Soil microbial communities from Bangor area, North Wales, UK, treated with sorgoleone, replicate 2 Fidelity Systems Inc 3300010227 Metagenome Analysis Phred/Phrap/Consed v. 23.0 released per JGI data release policy Yes Yes stepan.toshchakov@gmail.com Stepan Toshchakov No Engineered Lab enrichment Unclassified Unclassified Unclassified soil 53.24 -4.01 83436105 269489 72 2 147 1 0.0 Metagenome 3300027138 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepB_0h DOE Joint Genome Institute (JGI) 3300027138 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 121042635 248418 124 11 197 17 SRX5245104 Unrestricted 15.19 Metagenome 3300034092 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069 DOE Joint Genome Institute (JGI) 3300034092 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1331707408 2650182 600 50 899 97 SRX7622015 Unrestricted 12.52 Metagenome 3300000144 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P4 1000m DOE Joint Genome Institute (JGI) 3300000144 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 48.65 -126.666667 17957835 45291 24 8 44 13 Unrestricted 0.0 Metagenome 3300065607 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 802 in Cardston County, Alberta, Canada - S00JY_0063 Microbiome Insights 3300065607 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.264899 -113.060598 243863941 345624 91 4 138 5 0.0 Metagenome 3300003093 *Microbiome Permanent Draft Sea squirt microbial communities from various locations Lissoclinum patella microbial communities from Palau, Philippine Sea, Pacific Ocean - P1 3300003093 Metagenome Analysis Celera Assembler v. 6.0 Made public because these are downloaded from Genbank No Yes ews1@utah.edu Eric Schmidt Yes 22123943 Host-associated Tunicates Unclassified Ascidians Unclassified Sea squirt 8.124949 134.434094 6197726 6461 3 0 3 0 0.0 Metagenome 3300032608 *Microbiome Permanent Draft Meromitic Lake A Freshwater microbial communities from meromitic lake A, Ellesmere Island, Canada - Sample 55m Laval University 3300032608 Metagenome Analysis Megahit v. 1.0.5 released by JGI data releasing policy Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 82.99445 -75.443367 1313646904 2827591 521 3 1084 2 0.0 Metagenome 3300036395 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Plectolyngbya sp. WJT66-NPBG17 and co-occurring heterotrophs from soil crust from Mojave Desert, Joshua Tree National Park, California, United States - 20190201_42 DOE Joint Genome Institute (JGI) 3300036395 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Soil crust Soil Biological Soil crust 34.0655 -116.1702 48041408 54274 8 1 9 2 SRX8849069 Unrestricted 151.1 Metagenome 3300005276 *Microbiome Permanent Draft Arabidopsis rhizosphere microbial communities from the University of North Carolina Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Mutant cpr5 v1 DOE Joint Genome Institute (JGI) 3300005276 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes sgtringe@lbl.gov, sgtringe@lbl.gov; dangl@email.unc.edu Susannah Tringe, Susannah Tringe; Jeff Dangl Yes 22859206 Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9 -79.05 59254881 178521 429 28 920 47 Unrestricted 0.0 Metagenome 3300026304 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026304 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 470071019 881034 239 30 456 38 SRX2563718 Unrestricted 0.0 Metagenome 3300025248 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP-118 (SPAdes) DOE Joint Genome Institute (JGI) 3300025248 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es; mbsulli@gmail.com Silvia G. Acinas; Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 11.9811 -108.0335 187685045 379132 111 1 130 2 SRX4915168 Unrestricted 0.0 Metagenome 3300005082 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Hydrocarbon microbial Community from Halfdan Field, North Sea, Denmark - MHDA9 Shell Corporation 3300005082 Metagenome Analysis megahit Released on PI's request No Yes ebalsop@lbl.gov Eric Alsop No Environmental Aquatic Deep subsurface Marine Hydrocarbon water 55.49 7.42 579136393 1601192 3038 2 5863 18 0.0 Metagenome 3300020029 *Microbiome Permanent Draft Freshwater viral communities from Chicago Sanitary Ship Canal, USA Freshwater viral communities from Laramie, Illinois, USA - 2 University of Illinois-Urbana Champaign 3300020029 Metagenome Analysis SPADES v3.10.1 released by JGI data releasing policy No Yes wtliu@illinois.edu Wen-Tso Liu No Environmental Aquatic River Freshwater Unclassified Freshwater 41.89166 -90.510555 62152082 109177 8 0 18 0 0.0 Metagenome 3300021511 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4869-18-1-2_MG DOE Joint Genome Institute (JGI) 3300021511 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.0074 -110.591 303118174 607177 307 2 482 6 SRX3982092 Unrestricted 12.39 Metagenome 3300033277 *Microbiome Permanent Draft Meromitic Lake A Freshwater microbial communities from meromitic lake A, Ellesmere Island, Canada - Sample 34m re-sequencing Laval University 3300033277 Metagenome Analysis SPADES v. 3.10.1 released by JGI data releasing policy Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 82.99445 -75.443367 627247342 2789017 1058 3 2041 14 0.0 Metagenome 3300050468 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - E2NW8 DOE Joint Genome Institute (JGI) 3300050468 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 152488758 282959 186 50 317 55 Unrestricted 16.43 Metagenome 3300002084 *Microbiome Permanent Draft Saline desert soil microbial communities from Kutch, Gujarat, India Saline desert soil microbial communities from Kutch, Gujarat, India - S4 3300002084 Metagenome Analysis Released per request from Aanal Pandit - March 31 2014 No Yes ggi_gsbtm@yahoo.com Snehal Bagatharia No Environmental Terrestrial Unclassified Soil Desert Saline desert soil 23.941333 70.188389 0 0 0 0 0 0 0.0 Metagenome 3300037172 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 S2 1-5 DOE Joint Genome Institute (JGI) 3300037172 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 833435004 1745784 378 40 674 73 SRX8144745 Unrestricted 7.23 Metagenome 3300007153 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila putrida male 3 gut Cornell University 3300007153 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy Yes Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila putrida male adult gut 43.025606 -77.572811 152878478 369695 134 19 215 20 0.0 Metagenome 3300010036 *Microbiome Permanent Draft Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26 DOE Joint Genome Institute (JGI) 3300010036 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes klgravuer@ucdavis.edu Kelly Gravuer No Environmental Terrestrial Grasslands Soil Unclassified Serpentine soil 38.8693 -122.4283 1855514221 4053490 1522 20 2706 35 SRX2525414 Unrestricted 0.0 Metagenome 3300071114 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Treehaven, Wisconsin, USA - TREE_050-M-20200708-COMP-DNA1 3300071114 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 33351319 105630 138 21 255 37 0.0 Metagenome 3300034257 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17 DOE Joint Genome Institute (JGI) 3300034257 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9142 -147.835 752883641 1872140 672 11 1252 11 SRX7633856 Unrestricted 9.96 Metagenome 3300047996 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_130814.NP2 DOE Joint Genome Institute (JGI) 3300047996 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 812085607 1779573 471 90 739 139 Unrestricted 13.65 Metagenome 3300022428 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1BM2 JM35 AGRF 3300022428 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 43147937 73086 26 1 50 4 0.0 Metagenome 3300044743 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 077-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044743 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.927 -106.9728 309236686 879374 507 31 970 66 Unrestricted 7.6 Metagenome 3300069493 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_042-M-20160727-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069493 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 45954644 142318 147 7 307 9 0.0 Metagenome 3300035155 *Microbiome Permanent Draft Forest soil microbial communities from Eldorado National Forest, California, USA Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_CLV_5.1 DOE Joint Genome Institute (JGI) 3300035155 Metagenome Analysis metaspades v. 3.13.0 Yes Yes ndove7@gmail.com Nicholas Dove No Environmental Terrestrial Temperate forest Soil Bulk soil soil 38.7856 -120.428 1231826809 3516780 1372 101 2633 158 SRX7659674 Unrestricted 8.42 Metagenome 3300046472 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere DOE Joint Genome Institute (JGI) 3300046472 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1208 -123.2695 1290260701 2043098 356 68 575 90 Unrestricted 15.01 Metagenome 3300069274 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Guanica State Forest and Biosphere Reserve, Puerto Rico - GUAN_007-M-20210922-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069274 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tropical forest Soil Unclassified Terrestrial soil 17.972832 -66.857711 2518130650 6046062 1188 23 2431 30 0.0 Metagenome 3300043736 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - III_P72_A50 DOE Joint Genome Institute (JGI) 3300043736 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.2046 -62.7742 826764572 2250516 542 6 1067 22 Unrestricted 7.9 Metagenome 3300002100 *Microbiome Permanent Draft Soil microbial communities from Kansas (Konza Prairie Natural Area and Manhattan, Kansas, USA) Soil microbial communities from Manhattan, Kansas, USA - Sample 500um MDA DOE Joint Genome Institute (JGI) 3300002100 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 revert back to private per Christa Yes Yes sgtringe@lbl.gov, sgtringe@lbl.gov; ELBrodie@lbl.gov Susannah Tringe, Susannah Tringe; Eoin Brodie No Environmental Terrestrial Unclassified Soil Unclassified Soil 39.214 -96.5852 166878967 374037 44 1 153 2 Unrestricted 0.0 Metagenome 3300040150 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Abby Road, Pacific Northwest, WA, USA - ABBY_004-M-20170605-COMP-DNA1 Battelle Memorial Institute 3300040150 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.76243 -122.33033 9781553 28775 48 11 94 11 0.0 Metagenome 3300013634 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00404 Weill Cornell Medical College 3300013634 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.97 8566302 14964 5 0 10 0 SRX822375 0.0 Metagenome 3300039717 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_003-M-20170619-COMP-DNA1 Battelle Memorial Institute 3300039717 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 45400735 126395 106 7 179 19 0.0 Metagenome 7000000512 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160178356 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000512 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 111318010 211906 0 0 0 0 0.0 Metagenome 3300048014 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Western Region, Iceland - Sphagnum magellanicum H2_MAG_ICE DOE Joint Genome Institute (JGI) 3300048014 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 2427107531 3038861 542 125 718 192 SRX14752521 Unrestricted 19.79 Metagenome 3300038841 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample13 King Abdulaziz City for Science and Technology (KACST) 3300038841 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 18.34 40.44 19771559 59853 44 0 102 0 SRX1097579 0.0 Metagenome 3300012109 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #397 DOE Joint Genome Institute (JGI) 3300012109 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 76942819 151928 76 1 130 3 SRX3296257 Unrestricted 0.0 Metagenome 3300029026 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 281_12M Beijing Genomics Institute (BGI) 3300029026 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 81823371 98010 47 0 73 0 ERX491067 0.0 Metagenome 3300056722 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHL_02 DOE Joint Genome Institute (JGI) 3300056722 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.40849 -82.168434 65756605 109112 2 1 2 5 Restricted 0.0 Metagenome 3300044951 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater bacterial communities from Lake Mendota, Wisconsin, United States - ME_2020-08-05_23.5m_Bacteria_A DOE Joint Genome Institute (JGI) 3300044951 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 651468969 1022206 279 13 433 34 Unrestricted 16.26 Metagenome 3300009030 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from Kermadec Trench to uncover new lineages of life (NeLLi) - N075 metaG DOE Joint Genome Institute (JGI) 3300009030 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes eaeloefadrosh@lbl.gov, EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Ocean trench Marine Sediment Deep subsurface -32.8507 -177.6629 2274844702 4411621 1054 46 1796 46 SRX3204062 Unrestricted 0.0 Metagenome 3300002082 *Microbiome Permanent Draft Saline desert soil microbial communities from Kutch, Gujarat, India Saline desert soil microbial communities from Kutch, Gujarat, India - S3 3300002082 Metagenome Analysis Released per request from Aanal Pandit - March 31 2014 No Yes ggi_gsbtm@yahoo.com Snehal Bagatharia No Environmental Terrestrial Unclassified Soil Desert Saline desert soil 23.908056 70.537806 0 0 0 0 0 0 0.0 Metagenome 3300001156 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M2 DOE Joint Genome Institute (JGI) 3300001156 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 2682431 8399 79 9 135 9 SRX3311935 Unrestricted 0.0 Metagenome 3300003486 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_500_biof DOE Joint Genome Institute (JGI) 3300003486 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 293871995 472370 161 30 241 50 SRX2770511, SRX2770512 Unrestricted 0.0 Metagenome 3300012898 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1 DOE Joint Genome Institute (JGI) 3300012898 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 587531920 1515511 637 45 1246 78 SRX3297420 Unrestricted 3.85 Metagenome 3300019373 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Alfalfa, Gen0, Rep 3 DOE Joint Genome Institute (JGI) 3300019373 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4148 -119.8405 288075575 439210 1157 2 1724 7 SRX3962662 Unrestricted 99.79 Metagenome 3300037174 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 S2 20-24 DOE Joint Genome Institute (JGI) 3300037174 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 485650039 816943 143 5 230 9 SRX8144762 Unrestricted 16.66 Metagenome 3300005084 *Microbiome Permanent Draft Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich - 47s-102 University of Cincinnati 3300005084 Metagenome Analysis Velvet v. 0.7.57 released per JGI data release policy No Yes rlamendella@lbl.gov Regina Lamendella No Environmental Aquatic Groundwater Freshwater Contaminated Groundwater 40.0 -74.5 0 0 0 0 0 0 0.0 Metagenome 3300049283 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB40 DOE Joint Genome Institute (JGI) 3300049283 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 69905976 175425 180 4 400 6 Unrestricted 27.11 Metagenome 3300047376 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_170726.NP2 DOE Joint Genome Institute (JGI) 3300047376 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 800011950 1597179 479 91 693 153 Unrestricted 14.44 Metagenome 3300038335 *Microbiome Permanent Draft Groundwater microbial communities from Horonobe Underground Research Laboratory (URL), Japan Groundwater microbial communities from Horonobe Underground Research Laboratory (URL), Japan - horonobe_ig2103 University of California, Berkeley 3300038335 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 28350393 Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 45.045278 141.859444 202351482 268738 127 0 169 0 0.0 Metagenome 3300050008 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume viral communities from North Pacific Ocean - CTD-AT42-06-010-45m-0.03 v DOE Joint Genome Institute (JGI) 3300050008 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 9.84014 -104.29177 48642448 140901 23 7 36 15 Restricted 341.13 Metagenome 3300025428 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH29Jul08 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025428 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 179921703 369534 163 40 246 75 SRX2565941 Unrestricted 0.0 Metagenome 3300071112 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_004-O-20180808-COMP-DNA1 3300071112 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 1849046 6436 30 2 60 3 0.0 Metagenome 3300028287 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_120m DOE Joint Genome Institute (JGI) 3300028287 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified marine 48.6 -123.5 556195538 1057718 373 57 490 103 SRX5244713 Unrestricted 16.5 Metagenome 3300023179 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510 DOE Joint Genome Institute (JGI) 3300023179 Metagenome Analysis spades v. 3.11.1-check Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.95 1332698522 2465785 581 49 890 62 SRX4664273, SRX4664272, SRX4664274, SRX4664271, SRX4664270 Unrestricted 35.27 Metagenome 3300069272 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Caribou Creek Watershed, Alaska, USA - BONA_009-O-20210707-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069272 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Terrestrial soil 65.169192 -147.520277 2951636096 6372091 1012 328 1915 559 0.0 Metagenome 3300043391 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from British Columbia, Canada - souththompson_2019_sw_WHONDRS-S195_0004 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043391 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 50.7753 -119.7215 762365151 1240912 420 156 691 241 Unrestricted 26.72 Metagenome 3300013632 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00936 Weill Cornell Medical College 3300013632 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.76 -73.92 10012234 14711 3 0 4 0 SRX822899 0.0 Metagenome 3300032155 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Lab enriched produced water microbial communities from pipeline in Medicine Hat, AB, Canada - MUS University of Calgary 3300032155 Metagenome Analysis MetaSpades v. 3.13.0 released by JGI data releasing policy No Yes nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis No Engineered Built environment Unclassified Pipeline Unclassified produced water 50.041667 -110.6775 117138002 347603 521 6 206 10 0.0 Metagenome 7000000514 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159591683 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000514 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 116507663 217294 0 0 0 0 0.0 Metagenome 3300001707 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from the Cayman Rise, Cayman Islands Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Beebe Supr50 3300001707 Metagenome Analysis IDBA_UD k52-k92 step10 released by JGI data releasing policy No Yes Gregory Dick, Sunit Jain No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 18.35 -81.85 24423628 39518 28 0 58 2 0.0 Metagenome 3300055087 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_4-s115 day 245 DOE Joint Genome Institute (JGI) 3300055087 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1403207518 2019072 228 135 299 154 Unrestricted 26.88 Metagenome 3300005100 *Microbiome Finished Cold seep microbial communities from the Ulleung Basin, East Sea, Korea Cold seep microbial communities from the Ulleung Basin, East Sea, Korea - Hemire mound Macrogen 3300005100 Metagenome Analysis CLC Workbench 6.5.1 released per JGI data release policy Yes Yes trycell@daum.net Jin-Woo Lee No Environmental Aquatic Cold seeps Marine Unclassified Cold seep 36.098 130.0788 100103530 120896 31 0 54 1 0.0 Metagenome 3300043509 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-376 Genome Quebec 3300043509 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 54.017546 -114.349047 819886153 1668706 336 74 471 132 0.0 Metagenome 3300028269 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Yuk_RepA_8h DOE Joint Genome Institute (JGI) 3300028269 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 115210035 269397 134 8 209 15 SRX5245415 Unrestricted 15.32 Metagenome 3300041039 *Microbiome Permanent Draft Hydraulic fracturing wastewater impacted soil microbiome project Amended soil microbial communities from Grande Prairie, Alberta, Canada - GP5027 University of British Columbia 3300041039 Metagenome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy Yes Yes alessi@ualberta.ca Daniel S. Alessi No Environmental Terrestrial Unclassified Soil Unclassified Soil 55.1707 -118.7884 10842168 15398 16 1 31 0 0.0 Metagenome 3300046474 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere DOE Joint Genome Institute (JGI) 3300046474 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5879 -123.1939 629846439 976010 240 50 384 58 Unrestricted 25.14 Metagenome 3300008523 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 763597684 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008523 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 160456262 226494 169 0 248 0 0.0 Metagenome 3300031623 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - CB21_32.1 DOE Joint Genome Institute (JGI) 3300031623 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified Marine 74.0136 -139.5971 1015887673 2007062 759 164 1131 284 SRX5797822 Unrestricted 13.97 Metagenome 3300056724 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Towuti Lake, South Sulawesi, Indonesia - Towuti_40m_2015 DOE Joint Genome Institute (JGI) 3300056724 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.7 121.4 596923170 1016507 370 8 495 16 Restricted 32.12 Metagenome 3300027785 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027785 Metagenome Analysis spades v. 3.11.1 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 741534842 1755587 312 63 531 99 SRX2564964 Unrestricted 0.0 Metagenome 3300007978 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human throat microbial communities from NIH, USA - visit 1, subject 763496533 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007978 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human 39.0042816 -77.1012173 100998577 145794 83 0 135 0 SRX024936, SRX098536 0.0 Metagenome 3300052668 *Microbiome Permanent Draft Simulated microbial communities of Trichodesmium and heterotrophic bacteria from Gulf of Aqaba, Eilat, Israel Simulated microbial communities of Trichodesmium and heterotrophic bacteria from Gulf of Aqaba, Eilat, Israel - T0-2 DOE Joint Genome Institute (JGI) 3300052668 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes yeala.shaked@mail.huji.ac.il Yeala Shaked No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified simulated 29.501 34.917 20342599 27736 13 0 15 0 Unrestricted 0.0 Metagenome 3300048012 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_201021.NP1 DOE Joint Genome Institute (JGI) 3300048012 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 923655751 2097740 628 177 970 335 Unrestricted 11.3 Metagenome 3300010168 *Microbiome Permanent Draft Soil microbial communities from Bangor area, North Wales, UK enriched with cashew seed oil Soil microbial communities from Bangor area, North Wales, UK - before enrichment Fidelity Systems Inc 3300010168 Metagenome Analysis Phred/Phrap/Consed v. 23.0 released per JGI data release policy Yes Yes stepan.toshchakov@gmail.com Stepan Toshchakov No Environmental Terrestrial Unclassified Soil Unclassified soil 53.24 -4.01 14574824 38851 13 0 19 1 0.0 Metagenome 3300033510 *Microbiome Permanent Draft Picher, OK, Soil Microbes Composed assembly of Cupriavidus sp. strains from Northwest Missouri State University, MO, USA - EM051920 The Sequencing Center (Fort Collins) 3300033510 Metagenome Analysis SPAdes v. 3.10.1 released by JGI data releasing policy No Yes agcamp@nwmissouri.edu Alisha Campbell No Engineered Modeled Unclassified Simulated communities (sequence read mixture) Unclassified defined medium 40.3519854 -94.8825243 6770268 6319 1 0 1 0 0.0 Metagenome 3300042010 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 DOE Joint Genome Institute (JGI) 3300042010 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.8942 -103.685 341249232 738310 419 39 709 76 SRX14829044 Unrestricted 21.75 Metagenome 3300039139 *Microbiome Permanent Draft Organic and conventional farm associated microbial communities from Canada and USA Wastewater microbial communities from Conventional dairy farm in Colorado, USA - WW26 Colorado State University 3300039139 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 40.7 -105.0 73588798 145443 111 0 208 0 0.0 Metagenome 3300030687 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_1 DOE Joint Genome Institute (JGI) 3300030687 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 1244054602 2518185 582 159 890 220 SRX5357864 Unrestricted 13.36 Metagenome 3300030408 *Microbiome Permanent Draft Thermal spring microbial communities from acidic hot spring in Taiwan Thermal spring microbial communities from acidic hot spring in Taiwan - Shi-Huang-Ping National Taiwan University 3300030408 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Thermal spring 25.19544 121.60245 26929848 36855 25 0 22 1 SRX547129 0.0 Metagenome 3300025821 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110421 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025821 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 439102161 815903 271 57 396 89 SRX2999665 Unrestricted 0.0 Metagenome 3300027317 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage3 60A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027317 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8406114 -122.2923487 48933525 62460 52 0 62 0 SRX3195087 Unrestricted 0.0 Metagenome 3300012988 *Microbiome Permanent Draft Amended soil microbial communities from New York, USA to study carbon cycling Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG DOE Joint Genome Institute (JGI) 3300012988 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes twhitman@wisc.edu Thea Whitman No Environmental Terrestrial Unclassified Soil Agricultural land soil 42.4531 -76.3842 2814679140 6330577 2571 216 4373 382 SRX3568470 Unrestricted 5.57 Metagenome 3300045298 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_5_F DOE Joint Genome Institute (JGI) 3300045298 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 185193578 219400 114 1 138 2 Unrestricted 84.34 Metagenome 3300032009 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19 DOE Joint Genome Institute (JGI) 3300032009 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1567679698 3745895 467 58 885 83 SRX5820248 Unrestricted 11.75 Metagenome 3300012491 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.8.old.040610 DOE Joint Genome Institute (JGI) 3300012491 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 98115025 267947 205 21 474 38 SRX3527430 Unrestricted 0.0 Metagenome 3300021403 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O DOE Joint Genome Institute (JGI) 3300021403 Metagenome Analysis spades v. 3.11.1-check Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 2920850133 6745490 1024 139 1946 222 SRX4024472 Unrestricted 7.92 Metagenome 3300008104 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 158499257 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008104 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 79108422 146062 49 0 84 0 0.0 Metagenome 3300018067 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex DOE Joint Genome Institute (JGI) 3300018067 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 .05 541076063 1186380 537 7 1052 17 SRX3938970 Unrestricted 4.53 Metagenome 3300027066 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF005 (SPAdes) DOE Joint Genome Institute (JGI) 3300027066 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 51693303 153589 43 6 95 12 SRX2014324 Unrestricted 0.0 Metagenome 3300031275 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-90 DOE Joint Genome Institute (JGI) 3300031275 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.759 -70.891 463440491 883299 410 3 659 9 SRX5358498 Unrestricted 13.65 Metagenome 3300001071 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN411 DOE Joint Genome Institute (JGI) 3300001071 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Soil 44.20517707 -122.1284473 161085 459 18 1 42 0 SRX3311798 Unrestricted 0.0 Metagenome 7000000321 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159591683 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000321 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 54870274 102288 0 0 0 0 0.0 Metagenome 3300040334 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 035B_R1 University of Maryland 3300040334 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.19149722 24.926775 4788083 12530 21 0 22 0 0.0 Metagenome 3300018089 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG DOE Joint Genome Institute (JGI) 3300018089 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 4.2396 -73.2024 2197751806 5177668 1766 17 3406 34 SRX3936916 Unrestricted 4.75 Metagenome 3300069558 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - NIWO_004-O-20160828-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069558 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.05425 -105.58237 20108641 63718 79 15 148 26 0.0 Metagenome 3300026302 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_5/23/2013_ DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026302 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 264821411 374318 153 22 195 28 SRX2714495 Unrestricted 0.0 Metagenome 3300036975 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0819S20re DOE Joint Genome Institute (JGI) 3300036975 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0388 312008480 512422 256 1 402 1 SRX8670449 Unrestricted 13.25 Metagenome 3300008080 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763759525 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008080 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 151557107 208328 94 0 126 0 0.0 Metagenome 3300035487 *Microbiome Finished Marine microbial communities from Northern Baffin Bay, Arctic Ocean Marine microbial communities from Northern Baffin Bay, Arctic Ocean - scm_25m_st115_2017 CEA Genoscope 3300035487 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy Yes Yes nastasia.freyria.1@ulaval.ca Nastasia Freyria No Environmental Aquatic Oceanic Marine Photic zone marine 76.21 -71.15 1828534994 5129176 2169 544 2452 1007 0.0 Metagenome 3300069319 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_004-O-20170829-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069319 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 14181659 40455 38 10 77 15 0.0 Metagenome 3300002276 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 09JUN2009 deep hole epilimnion ns DOE Joint Genome Institute (JGI) 3300002276 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 59811055 149903 96 9 178 21 SRX1987766 Unrestricted 0.0 Metagenome 3300034094 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Sep2000-rr0077 DOE Joint Genome Institute (JGI) 3300034094 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 960513897 1943677 570 114 875 190 SRX7622046 Unrestricted 12.21 Metagenome 3300000142 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 500m DOE Joint Genome Institute (JGI) 3300000142 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 49.283333 -134.666667 148483697 332495 133 28 245 41 Unrestricted 0.0 Metagenome 3300045493 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-551 Genome Quebec 3300045493 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.485507 -120.50673 932816447 2078919 409 79 632 116 0.0 Metagenome 3300013605 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100526 University of Pennsylvania 3300013605 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4640109 9897 16 6 40 11 SRX756228 0.0 Metagenome 3300029401 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 009_6_9_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029401 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 147434971 181271 81 0 99 0 0.0 Metagenome 3300021208 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Stylissa sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina ""control"", st32ic 200bp-microeukaryotes" University of New South Wales 3300021208 Metagenome Analysis IDBA-UD released by JGI data releasing policy Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Stylissa sp. -9.828217 150.820517 274630 649 0 0 0 0 0.0 Metagenome 3300042272 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA MBR feed microbial communities from membrane bioreactor in Denver, Colorado, USA - FD_D185_1 DOE Joint Genome Institute (JGI) 3300042272 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Wastewater Mine water Industrial wastewater Produced water MBR feed 39.7823 -104.9101 577673039 875888 416 6 569 9 Unrestricted 18.25 Metagenome 3300042718 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from Clueless hydrothermal vent, Atlantic Ocean - BspSym_Cl_1_11-2 Re-assembly Max Planck Institute for Marine Microbiology 3300042718 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills -4.803266 -12.3718 174909369 164454 3 9 5 10 ERX3367185 0.0 Metagenome 3300009073 *Microbiome Permanent Draft Genome and metagenome analysis of marine red algae Porphyra Marine algal microbial communities from Bantry Bay, Ireland - BantryBay_4 metaG DOE Joint Genome Institute (JGI) 3300009073 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes brawley@maine.edu, Brawley@maine.edu Susan Brawley No Host-associated Algae Unclassified Red algae Unclassified Marine 51.64 -9.71 584101450 883521 489 13 1141 21 SRX2954971 Unrestricted 0.0 Metagenome 3300027652 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027652 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 393973822 908444 261 73 413 127 SRX3312018 Unrestricted 0.0 Metagenome 3300000791 *Microbiome Draft Soil microbial communities from the Kellog Biological Station, Michigan, US, in response to alternate cropping systems KBS GLBRC Intensive site DFR1 Sept09 DOE Joint Genome Institute (JGI) 3300000791 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes tschmidt@msu.edu Thomas Schmidt, Thomas M. Schmidt No Environmental Terrestrial Unclassified Soil Unclassified Soil 42.405849 -85.384504 85673339 261037 291 12 461 23 Unrestricted 0.0 Metagenome 3300042765 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S1_20_30 NMDC pilot DOE Joint Genome Institute (JGI) 3300042765 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen Yes 29920461 Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37229149 -119.2718121 119367623 301751 167 2 334 4 SRX2523178 0.0 Metagenome 3300020475 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100002029 (ERX555951-ERR599001) CEA Genoscope 3300020475 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 43.7738 -16.9097 1367119090 3398014 552 116 927 172 0.0 Metagenome 3300039052 *Microbiome Permanent Draft Coastal seawater microbial communities from Massachusetts, USA Coastal seawater microbial communities from Nahant, Massachusetts, USA - M2.T92 Massachusetts Institute of Technology 3300039052 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Coastal seawater 42.0 -70.0 6110296 11300 18 0 24 0 0.0 Metagenome 3300030203 *Microbiome Permanent Draft Marine deep subsurface microbial communities from Pacific Ocean near coastal Oregon, USA Marine deep subsurface microbial communities from Pacific Ocean near coastal Oregon, USA - F2H4b Georgia Institute of Technology 3300030203 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Deep subsurface Marine Deep subsurface Marine deep subsurface 44.6 -125.1 34026628 60694 14 0 15 0 SRX1251862 0.0 Metagenome 3300017699 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.N DOE Joint Genome Institute (JGI) 3300017699 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1881 -86.344 15617424 49347 5 5 12 6 SRX8048357 Unrestricted 496.61 Metagenome 3300061109 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIIF5SW PMA-treated Jet Propulsion Laboratory, California Institute of Technology 3300061109 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 29.5517 -95.0985 4869579 4957 4 3 6 6 SRX3808510, SRX3244862, SRX3808507, SRX3244869 0.0 Metagenome 3300006195 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 DOE Joint Genome Institute (JGI) 3300006195 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Host-associated Plants Endosphere Roots Unclassified Populus endosphere 35.8444 -83.9599 2956585296 9216283 3313 48 5814 97 SRX2840056 Unrestricted 0.0 Metagenome 3300034078 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B1A0.1 DOE Joint Genome Institute (JGI) 3300034078 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 292453131 788447 448 3 866 3 SRX7658909 Unrestricted 6.75 Metagenome 3300031897 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16 DOE Joint Genome Institute (JGI) 3300031897 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 2237073916 5594146 677 5 1229 16 SRX5818218 Unrestricted 14.09 Metagenome 3300025675 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Hot Lake Consortium UCC-LE (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025675 Metagenome Analysis spades v. 3.11.1 Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 95451372 110367 50 0 59 0 SRX2518459 Unrestricted 0.0 Metagenome 3300038423 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P17_D8 DOE Joint Genome Institute (JGI) 3300038423 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 1169979863 1690006 307 5 454 11 SRX9472136 Unrestricted 26.28 Metagenome 3300026908 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 77 (SPAdes) DOE Joint Genome Institute (JGI) 3300026908 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 76880979 188041 91 1 173 0 SRX4341377 Unrestricted 0.0 Metagenome 3300013419 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100159 University of Pennsylvania 3300013419 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4838180 6791 9 5 11 6 SRX756373 0.0 Metagenome 3300002747 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK08-B DOE Joint Genome Institute (JGI) 3300002747 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.4 45215 136 21 4 25 7 SRX1991374 Unrestricted 0.0 Metagenome 3300040693 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONA_004-M-20170808-COMP-DNA1 Battelle Memorial Institute 3300040693 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.11044 -96.61295 1102496 3366 10 3 20 2 0.0 Metagenome 3300009185 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG DOE Joint Genome Institute (JGI) 3300009185 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 45.4091 -72.0994 1191059693 2160917 669 99 988 177 SRX2996445 Unrestricted 0.0 Metagenome 3300038302 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI149_2019_jan_150m DOE Joint Genome Institute (JGI) 3300038302 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 276616839 582523 260 6 423 11 SRX9402572 Unrestricted 14.62 Metagenome 3300033058 *Microbiome Permanent Draft Microbial communities from various environments in Magnetic Island Reef, Townsville, Australia Sponge tissue microbial communities from Magnetic Island Reef, Townsville, Australia - 36386 AGRF 3300033058 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes b.glasl@aims.gov.au Bettina Glasl No Host-associated Porifera Unclassified Sponge Unclassified Sponge tissue -19.1531 146.8641 859746180 1965676 338 8 458 15 0.0 Metagenome 3300028975 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 343_4M Beijing Genomics Institute (BGI) 3300028975 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 27810669 29888 14 0 23 0 ERX491096 0.0 Metagenome 3300007884 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 764588959 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007884 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 1517643 1754 2 0 2 0 0.0 Metagenome 3300003410 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA DOE Joint Genome Institute (JGI) 3300003410 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 283579857 524672 248 15 438 23 SRX2569221 Unrestricted 0.0 Metagenome 3300049149 *Microbiome Permanent Draft Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama - S061_CH12_fluctuating_T5 DOE Joint Genome Institute (JGI) 3300049149 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes njbouskill@lbl.gov Nicholas Bouskill No Environmental Terrestrial Tropical forest Soil Bulk soil Soil 9.17936 -79.8296 843705508 2168781 448 8 795 16 Unrestricted 8.06 Metagenome 3300026228 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Midwestern USA - DC3-104 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026228 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 36031590 65381 38 8 51 14 SRX2770435 Unrestricted 0.0 Metagenome 7000000366 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763901136 replicate 2 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000366 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 105500695 177831 0 0 0 0 0.0 Metagenome 3300005355 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG DOE Joint Genome Institute (JGI) 3300005355 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 4980750588 13457950 3560 243 5974 475 SRX2740299 Unrestricted 0.0 Metagenome 3300059452 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.18W.11 SIP fraction DOE Joint Genome Institute (JGI) 3300059452 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 209123399 374574 115 10 178 11 Unrestricted 0.0 Metagenome 3300032300 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 17-018 Genome Quebec 3300032300 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.714034 -64.76873 639325308 1249787 334 83 579 183 0.0 Metagenome 3300005569 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_13_20cm DOE Joint Genome Institute (JGI) 3300005569 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2386761365 7059557 2645 78 4318 119 SRX2728428 Unrestricted 0.0 Metagenome 3300042558 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jun2015-rr0646 DOE Joint Genome Institute (JGI) 3300042558 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1109216218 1729532 378 56 466 63 Unrestricted 21.56 Metagenome 3300028603 *Microbiome Permanent Draft Leachate and groundwater microbial communities from a municipal landfill and adjacent aquifer in Southern Ontario, Canada Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138R DOE Joint Genome Institute (JGI) 3300028603 Metagenome Analysis spades v. 3.11.1 Yes Yes laura.hug@uwaterloo.ca Laura Hug No Engineered Solid waste Unclassified Landfill Unclassified landfill leachate 43.442 -80.577 1729402186 3057430 1529 2 2292 9 SRX5256784 Unrestricted 20.0 Metagenome 3300025223 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025223 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 47557170 126944 189 17 396 34 SRX1989933 Unrestricted 0.0 Metagenome 3300043160 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_5 (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043160 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 688860729 1139304 156 7 268 13 SRX9140448 Unrestricted 43.47 Metagenome 3300011371 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00988 Weill Cornell Medical College 3300011371 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.59 -73.8 9910844 14812 6 0 9 0 SRX822950 0.0 Metagenome 7000000017 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160603188 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000017 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 22235175 48438 0 0 0 0 0.0 Metagenome 3300022443 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1BM3 JM51 AGRF 3300022443 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 41431057 76937 22 2 39 4 0.0 Metagenome 3300026335 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_12_20cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026335 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 647243818 1125639 383 10 582 8 SRX2521091 Unrestricted 0.0 Metagenome 3300049991 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Sediment-water slurry microbial communities from hot spring in Yellowstone National Park, WY, USA - Buffalo_pool_hpg_inc_1 DOE Joint Genome Institute (JGI) 3300049991 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Sediment-water slurry 44.5324 -110.7974 203649877 319885 96 1 163 0 Restricted 385.67 Metagenome 3300037198 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 E3 30-34 DOE Joint Genome Institute (JGI) 3300037198 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0467 851683083 1773445 547 1 957 6 SRX8144473 Unrestricted 8.58 Metagenome 3300025903 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025903 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 2383155244 5543354 1067 116 1924 191 SRX2837472 Unrestricted 0.0 Metagenome 3300049488 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Colorado, USA - comocreek_2019_sed_WHONDRS-S19S_0026 DOE Joint Genome Institute (JGI) 3300049488 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 40.03489 -105.54327 305566290 649838 452 21 843 21 Unrestricted 10.38 Metagenome 3300049607 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA15 DOE Joint Genome Institute (JGI) 3300049607 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 429523663 1076567 405 3 734 2 Unrestricted 7.8 Metagenome 3300042319 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2015-rd0665 DOE Joint Genome Institute (JGI) 3300042319 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 844740321 1315304 295 34 347 45 Unrestricted 27.39 Metagenome 3300025866 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_STIC08_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025866 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 41.84 -87.68 683611768 1390044 489 3 715 6 SRX2338906 Unrestricted 0.0 Metagenome 3300007994 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 160158126 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007994 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 118347307 177822 96 0 155 0 0.0 Metagenome 3300014953 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 546_12M Beijing Genomics Institute (BGI) 3300014953 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 133567172 178868 77 0 119 0 ERX491195 0.0 Metagenome 3300044728 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 062-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044728 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9212 -106.9514 549391846 1344079 472 17 857 21 Unrestricted 6.51 Metagenome 3300046498 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 soil DOE Joint Genome Institute (JGI) 3300046498 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.587958 -123.193966 6.68 57523242 110420 82 5 167 6 Unrestricted 27.72 Metagenome 3300037353 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 P3 30-34 DOE Joint Genome Institute (JGI) 3300037353 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0472 745640211 1253155 186 3 349 4 SRX10142345 Unrestricted 11.62 Metagenome 3300014741 *Microbiome Permanent Draft Human fecal microbial community of Hadza hunter-gatherer and regular subjects from Tanzania and Italy Human fecal microbial community from subjects in taly - 20007 University of Bologna 3300014741 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 44.4950537 11.3427401 36406710 88881 36 0 73 1 0.0 Metagenome 3300031987 *Microbiome Permanent Draft Microbial communities from the deep biosphere Freshwater microbial communities from Marcellus and Utica-Pint Pleasant shales in Ohio and Pennsylvania, USA, of methane shale flowback fluids - Sample_05012013 re-assembly Marine Biological Laboratory 3300031987 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Groundwater Freshwater Unclassified Freshwater 5.48 2518 44791352 83274 25 7 54 12 SRX1008492 0.0 Metagenome 3300053737 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 endosphere DOE Joint Genome Institute (JGI) 3300053737 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121649 -123.269525 118138377 260965 68 27 110 58 Unrestricted 25.07 Metagenome 3300060380 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210616_20_17 DOE Joint Genome Institute (JGI) 3300060380 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 419598831 610548 214 74 299 104 Unrestricted 40.35 Metagenome 3300042086 *Microbiome Permanent Draft Sediment microbial communities from Haima cold seep, South China Sea, China Sediment microbial communities from Haima cold seep, South China Sea, China - SY70.4.3_HM2C Shanghai Majorbio Bio-pharm Technology Co. 3300042086 Metagenome Analysis IDBA v. 1.1.3 released by JGI data releasing policy No Yes sulei@tongji.edu.cn Lei Su No Environmental Aquatic Cold seeps Marine Sediment Sediment 16.729915 110.473367 .06 to .08 522955117 601835 174 5 227 5 0.0 Metagenome 3300043482 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 035-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043482 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9206 -106.9514 317458570 863910 484 31 881 28 Unrestricted 7.93 Metagenome 3300027021 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and P2 (1) (SPAdes) DOE Joint Genome Institute (JGI) 3300027021 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 66404535 103806 51 0 82 0 SRX3311660 Unrestricted 0.0 Metagenome 3300013973 *Microbiome Permanent Draft Fecal viral communites from wild urban brown rats in Berlin, Germany Fecal viral communites from wild urban brown rats in Berlin, Germany - Mu/10/1775 Freie University Berlin 3300013973 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 52.529611 13.401343 1472081 3993 3 0 0 0 SRX616511 0.0 Metagenome 3300005587 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_05_20cm DOE Joint Genome Institute (JGI) 3300005587 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2398623532 7535633 2827 119 4792 204 SRX2726262 Unrestricted 0.0 Metagenome 3300003111 *Microbiome Permanent Draft Continuous culture Bioreactor microbial community inoculated with sediment from German Wadden Sea Bioreactor microbial community inoculated from the Wadden Sea, Germany - 168 days of incubation Bielefeld University, Max Planck Institute for Marine Microbiology 3300003111 Metagenome Analysis MetaVelvet v. v0.3 Made public because these are downloaded from Genbank No Yes mstrous@mpi-bremen.de Marc Strous Yes 23227024 Engineered Bioreactor Marine sediment inoculum Continuous culture Unclassified Continuous culture Bioreactor 53.31941 5.419206 13120702 16190 15 0 22 0 0.0 Metagenome 3300012361 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG DOE Joint Genome Institute (JGI) 3300012361 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 2764741931 5758013 1466 123 2894 213 SRX3372634 Unrestricted 0.0 Metagenome 3300016658 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Site 229 with 0.8UM filter J. Craig Venter Institute 3300016658 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater -68.4 78.18278 7.81 35994421 85506 44 0 94 0 0.0 Metagenome 3300020314 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000035 (ERX556135-ERR598974) CEA Genoscope 3300020314 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 20.8199 63.5138 200389065 501920 263 2 393 10 0.0 Metagenome 3300038597 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from Daisy Lake, Ontario, Canada Freshwater lake sediment microbial communities from Daisy Lake, Ontario, Canada - D52 University of Cambridge 3300038597 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 46.27199 -80.52479 48765426 121086 103 0 168 1 0.0 Metagenome 3300001221 *Microbiome Permanent Draft Switchgrass rhizosphere microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere microbial communities from Knoxville, Tennessee, USA - 12_2 University of Tennessee 3300001221 Metagenome Analysis No Yes jwang43@utk.edu Jun Wang No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 35.9606 -83.9208 1956787 6509 10 0 11 4 0.0 Metagenome 3300011864 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00725 Weill Cornell Medical College 3300011864 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.7 -74.01 44772518 71283 15 0 21 0 SRX822692 0.0 Metagenome 3300049570 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 DOE Joint Genome Institute (JGI) 3300049570 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.40849 -82.168434 1396889964 2232955 538 37 897 61 Unrestricted 16.0 Metagenome 3300009428 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 DOE Joint Genome Institute (JGI) 3300009428 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -50.35 -39.82 437999311 1017969 169 0 254 0 SRX2753838 Unrestricted 0.0 Metagenome 3300014231 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 203_D1_2014-5-23 San Diego State University 3300014231 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 484972 1895 8 4 24 7 0.0 Metagenome 3300035501 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - Beaver2Cecum1 DOE Joint Genome Institute (JGI) 3300035501 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.18 -122.54 931773686 1779084 1355 31 2091 39 SRX8345784 Unrestricted 14.19 Metagenome 3300001697 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A4-12 DOE Joint Genome Institute (JGI) 3300001697 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 687530 2483 29 1 65 2 SRX1990526 Unrestricted 0.0 Metagenome 3300029084 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 180_4M Beijing Genomics Institute (BGI) 3300029084 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 29746921 34583 22 0 23 0 ERX490974 0.0 Metagenome 3300001901 *Microbiome Permanent Draft Biogas fermenter microbial communities from the University of Hamburg, Germany Metagenome BioPara 28.05.13 3300001901 Metagenome Analysis released by JGI data releasing policy No Yes Guellert S; Wolfgang Streit No Engineered Solid waste Unclassified Unclassified Unclassified Biogas fermenter 194813313 804429 199 10 760 8 0.0 Metagenome 3300067064 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210531_04_05 DOE Joint Genome Institute (JGI) 3300067064 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 470001255 763261 179 57 289 87 Unrestricted 0.0 Metagenome 3300035399 *Microbiome Permanent Draft Extreme environments viral communities from various locations Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 544_ROV-KIPs DOE Joint Genome Institute (JGI) 3300035399 Metagenome Analysis spades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified filtered seawater 14.7529 -44.979 9690230 22684 28 15 45 18 SRX7709987 Unrestricted 605.59 Metagenome 3300070503 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Environmental Research Center, Maryland, USA - SERC_007-M-20170710-COMP-DNA1 Battelle Memorial Institute 3300070503 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Agricultural land Soil Unclassified Terrestrial soil 38.873795 -76.539828 6.04-6.4 1731295 6091 25 2 54 2 0.0 Metagenome 3300017902 *Microbiome Permanent Draft Marine microbial communities from Caribbean coral reef seawater Marine microbial communities from Caribbean coral reef seawater, Cuba - site C DNA Services Facility, University of Illinois, Chicago 3300017902 Metagenome Analysis MEGAHIT v1.1.1-2-g02102e1 released by JGI data releasing policy No Yes aapprill@whoi.edu Amy Apprill No Environmental Aquatic Intertidal zone Marine Coral reef seawater 20.82598 -78.97931 211998786 298623 100 10 118 10 0.0 Metagenome 3300026770 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06K1-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026770 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 25044198 81823 87 4 162 7 SRX2576175 Unrestricted 0.0 Metagenome 3300014564 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 87_12M Beijing Genomics Institute (BGI) 3300014564 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 139681461 178875 85 0 111 0 ERX491315 0.0 Metagenome 3300006921 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG DOE Joint Genome Institute (JGI) 3300006921 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -16.21 -76.63 349167523 773293 42 1 57 1 SRX2929233 Unrestricted 0.0 Metagenome 3300027873 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Bulk soil microbial communities from a Populus tree surrounding site in Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027873 Metagenome Analysis spades v. 3.11.1 Yes Yes pelletierda@ornl.gov Dale Pelletier No Environmental Terrestrial Tree plantation Soil Unclassified Bulk soil 35.8443 -83.9607 1283567223 3398490 684 20 1338 28 SRX2776983, SRX2776982 Unrestricted 0.0 Metagenome 3300003422 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from above oceans and continental USA - SEAC4RS-RF8-007 DOE Joint Genome Institute (JGI) 3300003422 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 2717485 9109 31 2 36 3 Unrestricted 0.0 Metagenome 3300002026 *Microbiome Permanent Draft Sinkhole freshwater microbial communities from Lake Huron, US Sinkhole freshwater microbial communities from Lake Huron, USA - Flux 5k+ University of Michigan 3300002026 Metagenome Analysis IDBA UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Sinkhole Freshwater Unclassified Sinkhole freshwater 45.19843 -83.32721 430304336 452653 50 3 46 4 0.0 Metagenome 3300045527 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mobile River, Alabama, USA - NASQAN2014_089 DOE Joint Genome Institute (JGI) 3300045527 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 31.0865 -87.9772 231071850 552782 284 45 476 80 Unrestricted 0.0 Metagenome 3300006201 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t30_691P_inflammed - viral_metagenome University of Texas Southwestern Medical Center 3300006201 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 127511103 241986 81 0 129 0 0.0 Metagenome 3300011217 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00370 Weill Cornell Medical College 3300011217 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.75 -73.94 38217818 57320 24 0 25 0 SRX822341 0.0 Metagenome 3300026094 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_B_H2O_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026094 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Pond water 37.4968 -122.1333 164967192 331567 139 9 199 10 SRX3203251 Unrestricted 0.0 Metagenome 3300036793 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in New South Wales, Australia - Pe_9 DOE Joint Genome Institute (JGI) 3300036793 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil -34.5 150.0 1080535012 1822113 356 56 576 90 SRX8385008 Unrestricted 24.73 Metagenome 3300029100 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 184_M Beijing Genomics Institute (BGI) 3300029100 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 116313553 154400 96 0 140 0 ERX490986 0.0 Metagenome 3300024975 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 79_HOW10 (SPAdes) DOE Joint Genome Institute (JGI) 3300024975 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 124945618 176145 40 0 51 0 SRX2721062 Unrestricted 0.0 Metagenome 3300003244 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK03-A DOE Joint Genome Institute (JGI) 3300003244 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 327152 1041 29 4 48 7 SRX2575242 Unrestricted 0.0 Metagenome 3300013127 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 48cm DOE Joint Genome Institute (JGI) 3300013127 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.05 29.2062 1466940267 3083893 1295 11 2232 15 SRX3571228 Unrestricted 13.03 Metagenome 3300020521 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 26SEP2010 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020521 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 106647987 215397 105 24 176 39 SRX1989280 Unrestricted 0.0 Metagenome 3300041775 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - A_27_wk_2 DOE Joint Genome Institute (JGI) 3300041775 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.8655 -106.912 125920138 411176 328 23 606 37 SRX14808150 Unrestricted 7.28 Metagenome 3300004016 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - As.Ma.rz DOE Joint Genome Institute (JGI) 3300004016 Metagenome Analysis MEGAHIT v. 0.1.3-bugfix2 Yes Yes avisel@lbl.gov, laila.partida@cinvestav.mx Axel Visel, Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.0936 -100.2988 946161704 3225648 915 114 2345 333 SRX2122695 Unrestricted 0.0 Metagenome 2044078014 *Microbiome Permanent Draft Marine sediment microbial communities from the Eel River Basin, Pacific Ocean, containing methane-oxidizing consortia Marine sediment microbial communities from the Eel River Basin, Pacific Ocean, containing methane-oxidizing consortia - ANME2c_2rp 454 Life Sciences, Pennsylvania State University 2044078014 Metagenome Analysis released per JGI data release policy No Yes vorphan@gps.caltech.edu Victoria Orphan Yes 18467493 Environmental Aquatic Neritic zone/Coastal water Marine Sediment Marine sediment 40.74703 -123.869505 21917627 48049 15 0 28 0 0.0 Metagenome 3300028032 *Microbiome Permanent Draft Leachate and groundwater microbial communities from a municipal landfill and adjacent aquifer in Southern Ontario, Canada Groundwater microbial communities from a municipal landfill in Southern Ontario, Canada - Pumphouse #1 DOE Joint Genome Institute (JGI) 3300028032 Metagenome Analysis spades v. 3.11.1 Yes Yes laura.hug@uwaterloo.ca Laura Hug No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 43.442 -80.577 746937909 1379627 890 17 1336 23 SRX5256798 Unrestricted 23.56 Metagenome 3300009821 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S1_20_30 DOE Joint Genome Institute (JGI) 3300009821 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen Yes 29920461 Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37229149 -119.2718121 194816267 426190 187 1 384 3 SRX2523178 Unrestricted 0.0 Metagenome 3300043250 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_6 (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043250 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 624811964 1028417 123 15 254 22 SRX9140453 Unrestricted 36.2 Metagenome 3300021386 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2016_2, 0.02 Toyama Prefectural University 3300021386 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Sediment marine 37.54164 137.93975 71699983 198338 15 1 40 6 0.0 Metagenome 3300047459 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_131218.NP2 DOE Joint Genome Institute (JGI) 3300047459 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 1023403359 2152369 646 87 1042 127 Unrestricted 12.75 Metagenome 3300007008 *Microbiome Permanent Draft Mining for adhesins from protozoa-associated epibionts Protozoa-associated epibionts from sheep rumen, Palmerston North, New Zealand - c-myc screened Leibniz Institute 3300007008 Metagenome Analysis Unknown released per JGI data release policy No Yes filomena.ng@agresearch.co.nz Filomena Ng No Host-associated Mammals Stomach Digestive system Rumen Rumen -40.355 175.6117 1143299 4057 4 1 1 2 0.0 Metagenome 3300044270 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T64 D DOE Joint Genome Institute (JGI) 3300044270 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7377 -64.3436 326164200 828967 16 1 26 3 Unrestricted 57.93 Metagenome 3300043461 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-393 Genome Quebec 3300043461 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 54.793714 -111.909254 874413040 1973145 399 75 563 127 0.0 Metagenome 3300006966 *Microbiome Permanent Draft Non-marine hypersaline water viral communities from Mallorca 2014 (Spain)E1 Non-marine hypersaline water viral communities from Mallorca, Spain, 2014 - E1 T11 University of Alicante 3300006966 Metagenome Analysis IDBA 1.1.1 PRE correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline water 39.338015 3.051796 14946431 43346 8 0 0 0 0.0 Metagenome 3300035090 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 DOE Joint Genome Institute (JGI) 3300035090 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 39.6589 -79.9058 772347203 2098250 767 69 1490 104 SRX8289554 Unrestricted 6.77 Metagenome 3300040703 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 088B_R1 University of Maryland 3300040703 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.69636111 27.07972222 1088860 3347 2 0 10 0 0.0 Metagenome 3300008497 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 404239096 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008497 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 107707196 136068 73 0 95 0 0.0 Metagenome 3300002753 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C27A4_35 DOE Joint Genome Institute (JGI) 3300002753 Metagenome Analysis Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 29602760 74594 99 20 162 40 SRX1991082 Unrestricted 0.0 Metagenome 3300050372 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - EG-10_D0 (version 3) DOE Joint Genome Institute (JGI) 3300050372 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3533 19.0466 405019576 866791 346 1 603 3 Restricted 0.0 Metagenome 3300017935 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40 DOE Joint Genome Institute (JGI) 3300017935 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 835296462 1562506 464 10 828 21 SRX3959982 Unrestricted 15.76 Metagenome 3300032265 *Microbiome Permanent Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada - Lake 06-071 Genome Quebec 3300032265 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.379073 -68.804204 764968351 1503600 396 69 595 128 0.0 Metagenome 3300001823 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM25, ROCA_DNA015_2.0um_2o 3300001823 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River plume Marine Plankton Marine plankton 10.2885 -54.512 13905559 32184 109 146 305 397 0.0 Metagenome 3300040095 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_003-M-20160718-COMP-DNA1 Battelle Memorial Institute 3300040095 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 12408518 37772 73 10 151 11 0.0 Metagenome 3300071120 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from KU Field Station, Kansas, USA - UKFS_009-M-20170802-COMP-DNA1 3300071120 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 317 2 0 0 0 0 0.0 Metagenome 3300002061 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - A-R2 J. Craig Venter Institute (JCVI) 3300002061 Metagenome Analysis Released per Alexandra J. Roth Schulze (April 1, 2016) No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 218991193 834370 53 16 185 26 0.0 Metagenome 3300024287 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK31 DOE Joint Genome Institute (JGI) 3300024287 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 124097101 320335 236 17 409 48 SRX4547585 Unrestricted 7.84 Metagenome 3300005401 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV203 DOE Joint Genome Institute (JGI) 3300005401 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 791644827 2002745 1085 19 1737 51 SRX1877465 Unrestricted 0.0 Metagenome 7000000496 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 160158126 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000496 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 88556398 159311 0 0 0 0 0.0 Metagenome 3300014833 *Microbiome Permanent Draft Activated sludge microbial communities from Shanghai, China Activated sludge microbial communities from Shanghai, China - wastewater treatment plant - influent sewage Tongji University 3300014833 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified Activated sludge 31.3 121.5 493408896 1121015 286 19 601 34 SRX450092 0.0 Metagenome 3300032218 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada - Lake 06-140 Genome Quebec 3300032218 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.87404 -75.669525 614338184 1305396 281 41 524 85 0.0 Metagenome 3300010258 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment bacterial and archeal communities from California, USA to study Microbial Dark Matter (Phase II) - Elbow Spring sediment metaG DOE Joint Genome Institute (JGI) 3300010258 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jkjarett@lbl.gov; rstepanauskas@bigelow.org Jessica Jarett; Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 39.0348 -122.4271 8.17 28851082 69015 117 1 167 1 SRX2526469 Unrestricted 0.0 Metagenome 3300006046 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_02_30cm DOE Joint Genome Institute (JGI) 3300006046 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 4911976148 14360879 4998 234 8349 368 SRX2726147 Unrestricted 0.0 Metagenome 3300025073 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection C1 (SPAdes) DOE Joint Genome Institute (JGI) 3300025073 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.534762 -107.782602 242485428 443898 308 7 487 12 SRX1990961 Unrestricted 0.0 Metagenome 3300013846 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - sediment SCG72 University of British Columbia 3300013846 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Sediment Marine 544666 1709 0 0 0 0 SRX143181 0.0 Metagenome 3300053163 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 endosphere DOE Joint Genome Institute (JGI) 3300053163 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121233 -123.270148 661225220 962738 158 140 235 160 Unrestricted 22.47 Metagenome 3300023296 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #604 DOE Joint Genome Institute (JGI) 3300023296 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 163100043 309384 91 0 145 1 SRX4397134 Unrestricted 21.59 Metagenome 3300000601 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 27JUL2009 epilimnion DOE Joint Genome Institute (JGI) 3300000601 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300025185 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP1482 (SPAdes) DOE Joint Genome Institute (JGI) 3300025185 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -28.41 179.14 45342302 84361 64 25 104 37 SRX1982557 Unrestricted 0.0 Metagenome 3300042651 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A42 University of California, Davis 3300042651 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 279813885 785359 348 8 687 19 0.0 Metagenome 3300024269 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet fungal communities from Santa Barbara, California, USA - diluted pellet 2 Spades (v3) (version 3) DOE Joint Genome Institute (JGI) 3300024269 Metagenome Analysis spades v. 3.11.1-check No Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4204 -119.6671 4851974925 9366472 5081 26 6737 47 SRX3964289 Unrestricted 0.0 Metagenome 3300012326 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100444 University of Pennsylvania 3300012326 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 15496998 38980 29 0 30 0 SRX756554 0.0 Metagenome 3300046368 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_170322.NP2 DOE Joint Genome Institute (JGI) 3300046368 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 766479106 1591792 450 100 720 145 Unrestricted 13.39 Metagenome 3300048020 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_131016.NP2 DOE Joint Genome Institute (JGI) 3300048020 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 691559414 1490441 512 98 746 203 Unrestricted 10.31 Metagenome 3300017709 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 10 SPOT_SRF_2010-04-27 DOE Joint Genome Institute (JGI) 3300017709 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 230523122 561146 50 57 100 97 SRX7207080, SRX7207081 Unrestricted 0.0 Metagenome 3300027271 *Microbiome Permanent Draft Comparative metagneomics of mesophilic and thermophilic cellulose-adapted consortia Cellulose adapted compost microbial communities from Newby Island Compost Facility, Milpitas, CA, USA - Passage2 37B (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300027271 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer Yes 25136443 Engineered Solid waste Composting Bio- and green waste (BGW) Unclassified Feedstock adapted compost 37.840898 -122.289614 220508683 349813 193 5 253 3 SRX3311900 Unrestricted 0.0 Metagenome 3300033522 *Microbiome Permanent Draft Halite endoliths microbial communities diversity study Halite endolithic microbial communities from Salar Grande, Atacama Desert, Chile - SG1-2017-02 NexteraXT library manual curation and re-assembly Johns Hopkins School of Medicine 3300033522 Metagenome Analysis metaSPAdes v. 3.12, metaWRAP v. 1.1 released by Jocelyne DiRuggiero Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Halite pinnacle -20.95319 -70.019951 349586398 454074 68 2 72 2 0.0 Metagenome 3300023540 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_51A University of California, Irvine 3300023540 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 122095768 125241 22 0 16 0 0.0 Metagenome 3300001266 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300001266 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 21945436 50550 56 3 70 6 SRX3307851 Unrestricted 0.0 Metagenome 3300022339 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Garden Lake, Rottnest Island (WA - Australia) - GL1GP3 JM66 AGRF 3300022339 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.995604 115.536873 27545930 56137 44 6 72 6 0.0 Metagenome 3300006803 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA DOE Joint Genome Institute (JGI) 3300006803 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 1162946128 2484860 629 383 904 636 SRX2855016 Unrestricted 0.0 Metagenome 3300013795 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS854 IDBA reassembly Marine Biological Laboratory 3300013795 Metagenome Analysis reassembly with IDBA-UD released by JGI data releasing policy No Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow marine hydrothermal vent 185075677 235925 83 3 86 1 0.0 Metagenome 3300009675 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC057_MetaG DOE Joint Genome Institute (JGI) 3300009675 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 41.53 -90.43 894000590 1495564 766 2 1189 2 SRX2157905 Unrestricted 0.0 Metagenome 3300011533 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00755 Weill Cornell Medical College 3300011533 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.96 26185167 33521 7 0 16 0 SRX822721 0.0 Metagenome 3300046315 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_52 DOE Joint Genome Institute (JGI) 3300046315 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9236 -106.9499 404160111 1216102 1035 229 2058 338 Restricted 0.0 Metagenome 3300013003 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from TAMU algal ponds, Corpus Christi, Texas, USA - TAMU ARW1 11/11 metagenome pilot DOE Joint Genome Institute (JGI) 3300013003 Metagenome Analysis MEGAHIT v. 1.0.6 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Engineered Artificial ecosystem Algae raceway pond Aquaculture Unclassified phycosphere 27.7828 -97.5621 64466595 104537 36 7 38 8 SRX7204009 Unrestricted 41.05 Metagenome 3300014316 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLC_D1 DOE Joint Genome Institute (JGI) 3300014316 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.209923 -122.033409 390223694 887843 371 8 698 16 SRX7182423 Unrestricted 0.0 Metagenome 3300046787 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from South Fork Polouse River, Pullman, Washington, USA - southforkpolouse_2019_sw_WHONDRS-S19S_0055 (version 2) DOE Joint Genome Institute (JGI) 3300046787 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 46.7322 -117.1803 310791513 472319 226 75 405 93 Unrestricted 0.0 Metagenome 3300014947 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 589_12M Beijing Genomics Institute (BGI) 3300014947 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 131465733 158623 79 0 116 0 ERX491243 0.0 Metagenome 3300005808 *Microbiome Permanent Draft Basalt sediment microbial communities from the East Pacific Rise Basalt sediment microbial communities from the East Pacific Rise Rocks 3300005808 Metagenome Analysis Mira released by JGI data releasing policy No Yes esinger@lbl.gov Esther Singer No Environmental Aquatic Oceanic Marine Benthic Basalt sediment 9.725 -104.16 8 5626904 11607 18 0 24 0 0.0 Metagenome 3300031781 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20 DOE Joint Genome Institute (JGI) 3300031781 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 2146983374 5297838 617 4 1079 15 SRX5820224 Unrestricted 13.62 Metagenome 3300000869 *Microbiome Permanent Draft Comparative metagneomics of mesophilic and thermophilic cellulose-adapted consortia Cellulose adapted compost microbial communities from Newby Island Compost Facility, Milpitas, CA, USA - Passage2 37A DOE Joint Genome Institute (JGI) 3300000869 Metagenome Analysis SOAPdenovo v1.05, Newbler released per user request Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer Yes 25136443 Engineered Solid waste Composting Bio- and green waste (BGW) Unclassified Feedstock adapted compost 37.840898 -122.289614 109516588 194772 132 5 197 14 SRX3782539 Unrestricted 0.0 Metagenome 3300002513 *Microbiome Permanent Draft Pimephales promelas gut microbial communities from the University of Colorado, Denver, USA, during Triclosan exposure experiment Gut microbiomes of Pimephales promelas (fathead minnow) during Triclosan exposure experiment - D14H1- High Triclosan exposure day 14 3300002513 Metagenome Analysis idba_ud released by JGI data releasing policy No Yes christopher.s.miller@ucdenver.edu Christopher Miller, Christopher S. Miller No Host-associated Fish Intestine Digestive system Unclassified Pimephales promelas gut 39.7392 -104.9847 496286593 899365 39 11 71 2 0.0 Metagenome 3300053776 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_58 DOE Joint Genome Institute (JGI) 3300053776 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9223 -106.9493 230720491 688690 545 118 965 203 Restricted 0.0 Metagenome 3300043426 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Hampton in Arden, England, United Kingdom - blythe_2019_sw_WHONDRS-S19S_0092 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043426 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 52.4198 -1.7043 815009272 1330902 507 64 733 86 Unrestricted 17.25 Metagenome 3300055490 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.1W.9 SIP fraction DOE Joint Genome Institute (JGI) 3300055490 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 450103164 785828 246 5 350 4 Unrestricted 15.94 Metagenome 3300061653 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0114 Microbiome Insights 3300061653 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 238082765 341937 81 1 133 1 0.0 Metagenome 3300014067 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00456 Weill Cornell Medical College 3300014067 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.71 -74.0 21645503 29889 14 0 16 0 SRX822425 0.0 Metagenome 3300029355 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 042_10_29_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029355 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 189923675 246666 193 0 272 0 0.0 Metagenome 3300045024 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Plains ecozone, Canada - Lake 04-615 Genome Quebec 3300045024 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 59.534902 -112.216745 882270054 1846570 385 125 581 193 0.0 Metagenome 3300037347 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Lake Collerson #991 DOE Joint Genome Institute (JGI) 3300037347 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5803 78.1939 368398580 719219 167 69 221 92 SRX9378921 Unrestricted 23.48 Metagenome 3300021310 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen5, Rep 2 DOE Joint Genome Institute (JGI) 3300021310 Metagenome Analysis spades v. 3.11.1-check Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4149 -119.841 166997797 207111 229 1 244 0 SRX4037782 Unrestricted 146.17 Metagenome 3300050219 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Warrenville, Illinois, USA - 50_707_IL_DR_0cm_c2_T1_16O DOE Joint Genome Institute (JGI) 3300050219 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 41.84145 -88.2298 786928403 1384238 238 0 410 2 Restricted 15.45 Metagenome 3300029569 *Microbiome Permanent Draft Thermal spring sediment microbial community from Yellowstone National Park, USA Moderately acidic thermal spring sediment microbial community from Yellowstone National Park, USA - MV2 Spring University of Wisconsin, Madison 3300029569 Metagenome Analysis metaSPAdes v. 3.7.1 released by Daniel Colman No Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.61003889 -110.43943056 35332273 63273 24 0 35 0 0.0 Metagenome 3300020566 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 13SEP2009 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020566 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 185410187 405470 203 37 292 54 SRX1988264 Unrestricted 0.0 Metagenome 3300038770 *Microbiome Draft Cave microbial communities from Monte Cristo cave, Diamantina, Brazil Cave microbial communities from Monte Cristo cave, Diamantina, Brazil - P7 The Keck Facility at the Josephine Bay Paul Center 3300038770 Metagenome Analysis megahit v. 1.2.2 released by JGI data releasing policy No Yes amandagbendia@gmail.com Amanda Bendia No Environmental Terrestrial Unclassified Cave Unclassified Cave wall -18.29644 -43.55931 688014289 889908 230 11 377 15 0.0 Metagenome 3300022738 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant dump, University of Wisconsin, Madison, United States - 3A20A DOE Joint Genome Institute (JGI) 3300022738 Metagenome Analysis spades v. 3.11.1-check Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0758 -89.4125 118381928 178683 91 1 110 2 SRX4663598 Unrestricted 65.84 Metagenome 3300014089 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_095 The George Washington University (GWU) 3300014089 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 13765548 33368 17 1 28 5 SRX656198 0.0 Metagenome 3300026078 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026078 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 4550261676 10528156 1673 240 3084 380 SRX2783789 Unrestricted 0.0 Metagenome 3300029587 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35697 Beijing Genomics Institute (BGI) 3300029587 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 229792733 294820 188 0 249 0 0.0 Metagenome 3300049797 *Microbiome Permanent Draft Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA - 6_d_oct_JRB_CZO DOE Joint Genome Institute (JGI) 3300049797 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dawsonfairbanks@email.arizona.edu Dawson Fairbanks No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.88299428 -106.5342526 939954374 1586860 352 14 619 17 Unrestricted 13.83 Metagenome 3300012190 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00916 Weill Cornell Medical College 3300012190 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.86 13450601 16717 11 0 19 0 SRX822879 0.0 Metagenome 3300028005 *Microbiome Permanent Draft Soil microbial communities from hillslopes of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-2-W_N DOE Joint Genome Institute (JGI) 3300028005 Metagenome Analysis spades v. 3.11.1 Yes Yes laurameredith@email.arizona.edu Laura Meredith No Engineered Artificial ecosystem Soil Mesocosm Unclassified soil 32.5789 -110.8512 79007464 188999 71 0 139 1 SRX5245809 Unrestricted 98.84 Metagenome 3300000887 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-65cm-16A)- 1 week illumina University of Tennessee 3300000887 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 269158794 1031884 513 6 959 18 0.0 Metagenome 3300046769 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Atchafalaya River, Louisiana, USA - NASQAN2011_229 DOE Joint Genome Institute (JGI) 3300046769 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 30.6907 -91.7362 6288492 20942 26 2 57 7 Unrestricted 0.0 Metagenome 3300054107 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_4_100 re-annotation DOE Joint Genome Institute (JGI) 3300054107 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 262135380 485920 140 0 231 0 SRX3002039 0.0 Metagenome 2199352012 *Microbiome Permanent Draft Rice-straw enriched compost microbial community from Berkeley Mesophilic microbial community from rice straw/compost enrichment Sample: eDNA_1 v1 DOE Joint Genome Institute (JGI) 2199352012 Metagenome Analysis released based on JGI ITS No Yes jikhudyakov@lbl.gov, apreddy@ucdavis.edu Jane Khudyakov, Amitha Reddy Yes 24205054 Engineered Solid waste Composting Grass Bioreactor Rice-straw enriched compost 38.5402727 -121.7500776 495813128 848933 467 0 811 0 Unrestricted 0.0 Metagenome 3300022457 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1OPP3 JM96 AGRF 3300022457 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 57767483 96143 45 2 60 4 0.0 Metagenome 3300048583 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Sediment microbial communities from freshwater Prado Wetlands in Corona, California, USA - ZJ_Prado_22 DOE Joint Genome Institute (JGI) 3300048583 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Wetlands Freshwater Sediment Sediment 33.919031 -117.617686 1659962550 2553250 564 211 826 271 Unrestricted 27.39 Metagenome 3300002199 *Microbiome Permanent Draft Freshwater microbial community from Sao Paulo Zoo Lake, Brazil Freshwater microbial communities from San Paulo Zoo lake, Brazil - JUN 2013 3300002199 Metagenome Analysis SoapDeNovo released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Lake -23.651072 -46.620675 107248263 317811 5 2 53 2 0.0 Metagenome 3300028793 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159 DOE Joint Genome Institute (JGI) 3300028793 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92057636 -106.94874802 795492854 1918428 393 10 667 17 SRX5354714 Unrestricted 12.13 Metagenome 3300002493 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS undermat 2012 DOE Joint Genome Institute (JGI) 3300002493 Metagenome Analysis Yes Yes dab14@psu.edu Donald A. Bryant, Donald Bryant Yes 27379049 Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic microbial mat 44.534 -110.7978 231777459 431981 155 0 232 1 SRX2554541 Unrestricted 0.0 Metagenome 3300005272 *Microbiome Draft Switchgrass rhizosphere microbial communities from Michigan, USA Switchgrass rhizosphere microbial communities from Buena Vista Grasslands Wildlife Area, Michigan, USA - BV2.1 v1 DOE Joint Genome Institute (JGI) 3300005272 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 44.168815 -89.633871 54412912 116766 143 4 270 7 Unrestricted 0.0 Metagenome 3300005718 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 DOE Joint Genome Institute (JGI) 3300005718 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 3657354354 11367313 2579 187 4406 338 SRX2832449 Unrestricted 0.0 Metagenome 3300034096 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098 DOE Joint Genome Institute (JGI) 3300034096 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1315275747 2583171 724 199 1080 299 SRX7622084 Unrestricted 13.21 Metagenome 3300002274 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 12OCT2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002274 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 27880368 74259 59 5 90 8 SRX1989920 Unrestricted 0.0 Metagenome 3300005765 *Microbiome Permanent Draft Human lung microbial communities from healthy (non-smokers and smokers) and HIV infected subjects Human lung microbial communites from HIV infected subject HIV13-1 New York University Langone Medical Center 3300005765 Metagenome Analysis Shotgun released per JGI data release policy No Yes leopoldo.segal@nyumc.org Leopoldo N Segal No Host-associated Mammals: Human Lung Respiratory system Unclassified Lung Microbiome 40.7127 -74.0059 25151779 73467 0 3 0 0 0.0 Metagenome 3300055510 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.3C.14 SIP fraction DOE Joint Genome Institute (JGI) 3300055510 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 166094125 306051 158 23 276 38 Unrestricted 12.48 Metagenome 3300035253 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada -18E_2a_13_7 mgh University of Alberta 3300035253 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified wastewater 56.7292 -111.3885 16922820 21890 13 0 15 0 0.0 Metagenome 2019105005 *Microbiome Permanent Draft Marine microbial community from Pulau Tioman, Malaysia Marine microbial communities from Pulau Tioman, Malaysia Illumina 2019105005 Metagenome Analysis Velvet released per JGI data release policy No Yes gires@ukm.my Gires Usup No Environmental Aquatic Oceanic Marine Photic zone Marine 2.8 104.2 2883652 5366 0 0 0 0 0.0 Metagenome 3300049339 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CBF3 DOE Joint Genome Institute (JGI) 3300049339 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 258365950 747664 402 3 753 14 Unrestricted 7.19 Metagenome 3300027323 *Microbiome Permanent Draft Deep subsurface and oceanic microbial communities from Witwatersrand Basin, South Africa, and the Canadian and Fennoscandian shields and at the Lost City Hydrothermal Field Deep oceanic, basalt-hosted subsurface ecosystem from Juan de Fuca Ridge flank, Pacific Ocean, CORK Borehole 1362B_J2.571 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027323 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; rappe@hawaii.edu Ramunas Stepanauskas; Michael Rappe Yes 28270584, 28350381, 28396823, 29467397 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Deep oceanic, basalt-hosted subsurface hydrothermal fluid 47.76 -127.76 -2667 271974198 486713 230 18 344 26 SRX1888493, SRX753338 Unrestricted 0.0 Metagenome 3300025533 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 415-1 deep-072012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025533 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 272675072 567003 206 4 346 7 SRX1987460 Unrestricted 0.0 Metagenome 3300027064 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF003 (SPAdes) DOE Joint Genome Institute (JGI) 3300027064 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 87275078 239980 49 3 100 6 SRX2014333 Unrestricted 0.0 Metagenome 3300008106 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-53-LTR University of Michigan 3300008106 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7635 -83.3309 9.195 599585208 838918 115 103 179 178 0.0 Metagenome 3300070251 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Virginia, USA - BLAN_001-M-20200714-COMP-DNA1 3300070251 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 1845402 6211 33 4 77 4 0.0 Metagenome 3300036860 *Microbiome Permanent Draft Soil microbial communities from fields in the western Corn Belt region, Nebraska, United States Soil microbial communities from fields in the western Corn Belt region, Nebraska, United States - Switchgrass plot 312, no N, depth 3 DOE Joint Genome Institute (JGI) 3300036860 Metagenome Analysis metaspades v. 3.13.0 Yes Yes marty.schmer@ars.usda.gov Marty Schmer No Environmental Terrestrial Agricultural land Soil Unclassified soil 41.1677 -96.4108 2609472837 4099804 626 18 997 25 SRX8296368 Unrestricted 16.16 Metagenome 3300007255 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 DOE Joint Genome Institute (JGI) 3300007255 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Saprolite Vadose zone soil 39.7291 -123.6419 875493477 1720652 398 4 722 19 SRX2752508 Unrestricted 0.0 Metagenome 3300045747 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Microbial mat bacterial communities from freshwater pond, North Slope, Alaska, United States - OKS_Pond6_19July2019 DOE Joint Genome Institute (JGI) 3300045747 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes demerson@bigelow.org David Emerson No Environmental Aquatic Pond Freshwater Unclassified freshwater ferric oxide microbial mat 68.6722 -149.1363 1427154557 2287550 760 245 1185 380 Unrestricted 16.01 Metagenome 3300011185 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #898 DOE Joint Genome Institute (JGI) 3300011185 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 201429522 388889 224 8 382 7 SRX2526866 Unrestricted 0.0 Metagenome 3300033069 *Microbiome Finished Seoul Wastewater Treatment Plant Virome, South Korea Activated sludge viral community from Seonam wastewater treatment plant, Seoul, South Korea - SWWTP-sludge1 v.1 Macrogen 3300033069 Metagenome Analysis SPAdes v. 3.10.1 released by JGI data releasing policy No Yes chojc@inha.ac.kr Jang-Cheon Cho No Engineered Wastewater Unclassified Activated Sludge Unclassified Activated sludge 37.577125 126.82583 48256732 68321 0 0 0 0 0.0 Metagenome 3300013455 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100747 University of Pennsylvania 3300013455 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4552667 8086 14 9 28 10 SRX756103 0.0 Metagenome 3300048879 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from North Pacific Ocean - CTD-AT42-06-007-2500m-0.1 DOE Joint Genome Institute (JGI) 3300048879 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 9.83807 -104.29118 186200456 344563 124 9 191 12 Unrestricted 95.27 Metagenome 3300070460 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_003-O-20160727-COMP-DNA1 3300070460 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 35582080 109011 100 7 167 16 0.0 Metagenome 7000000107 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 764447348 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000107 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 127176918 212225 0 0 0 0 0.0 Metagenome 3300000938 *Microbiome Permanent Draft Sinkhole freshwater microbial communities from Lake Huron, US Sinkhole freshwater microbial communities from Lake Huron, USA - r2gDNA Night2 University of Michigan 3300000938 Metagenome Analysis released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Sinkhole Freshwater Unclassified Sinkhole freshwater 45.19843 -83.32721 48597006 119202 155 20 194 41 0.0 Metagenome 3300027402 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A3-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300027402 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 22384728 77222 87 2 187 3 SRX1990521 Unrestricted 0.0 Metagenome 3300056726 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.5C.8 SIP fraction DOE Joint Genome Institute (JGI) 3300056726 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 176479522 356991 178 1 266 3 Unrestricted 14.86 Metagenome 3300029022 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 265_12M Beijing Genomics Institute (BGI) 3300029022 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 62154208 80341 57 0 81 0 ERX491041 0.0 Metagenome 3300039040 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Indian Ocean - SMH1 Michigan State University 3300039040 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 1.26600833 103.8333333 35518776 107452 9 0 39 4 0.0 Metagenome 3300031958 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-MatCore DOE Joint Genome Institute (JGI) 3300031958 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5341 -110.798 459771185 953073 239 0 338 0 SRX6411437 Unrestricted 123.46 Metagenome 3300042355 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME25Aug2018-rr0790 DOE Joint Genome Institute (JGI) 3300042355 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 812815552 1295648 375 61 539 104 Unrestricted 13.46 Metagenome 3300040813 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Seawater microbial communities from Western North Atlantic Ocean - Oce2_MesoD DOE Joint Genome Institute (JGI) 3300040813 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Oceanic Marine Unclassified seawater 35.0018 -73.5968 513444013 805294 311 18 454 32 SRX9641568 Unrestricted 14.24 Metagenome 3300015310 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_01AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015310 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 173272175 302424 16 136 16 224 SRX3923578 Unrestricted 7.65 Metagenome 3300026145 *Microbiome Permanent Draft Anaerobic reactors microbiome study Activated sludge microbial communities from lab. scaled anaerobic digester in Belvaux, Luxembourg - ACS0-8 University of Luxembourg 3300026145 Metagenome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 49.506216 5.943617 316656176 384398 83 7 208 10 0.0 Metagenome 3300042569 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME22Jun2006D9-rr0014 DOE Joint Genome Institute (JGI) 3300042569 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1075626536 1675810 321 39 412 71 Unrestricted 24.49 Metagenome 3300005558 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_05_40cm DOE Joint Genome Institute (JGI) 3300005558 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2542254583 7222794 2157 19 3715 42 SRX2728027 Unrestricted 0.0 Metagenome 3300043732 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - FT_A100 DOE Joint Genome Institute (JGI) 3300043732 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.1397 -62.9001 1331565141 3627297 725 14 1403 16 Unrestricted 8.47 Metagenome 3300071035 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_053-O-20160727-COMP-DNA1 3300071035 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 27732245 84974 75 8 135 15 0.0 Metagenome 7000000516 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 763496533 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000516 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 193953910 295092 0 0 0 0 0.0 Metagenome 3300039960 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 022B_R1 University of Maryland 3300039960 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.287625 24.79548056 18121834 34593 35 1 40 1 0.0 Metagenome 3300026538 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_13_40cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026538 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 1464627713 2485798 673 33 1094 49 SRX2727604 Unrestricted 0.0 Metagenome 7000000649 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 160158126 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000649 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 194271525 344851 0 0 0 0 0.0 Metagenome 3300027640 *Microbiome Permanent Draft Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland, that are autotrophic Deep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/23 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027640 Metagenome Analysis spades v. 3.11.1 Yes Yes rizlan.bernier-latmani@epfl.ch Rizlan Bernier-Latmani Yes 27739431 Environmental Aquatic Groundwater Deep subsurface Porewater Deep subsurface 47.379 7.1648 588151591 885066 432 2 622 10 SRX957931, SRX957930 Unrestricted 0.0 Metagenome 3300046476 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere DOE Joint Genome Institute (JGI) 3300046476 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1211 -123.2694 722395116 1204877 273 87 458 98 Unrestricted 12.64 Metagenome 3300005319 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila neotestacea female 2 gut Cornell University 3300005319 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy No Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila neotestacea female adult gut 43.025606 -77.572811 137484491 324631 83 6 114 8 0.0 Metagenome 3300048548 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_201202.NP1 DOE Joint Genome Institute (JGI) 3300048548 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 848628255 1795053 521 99 811 162 Unrestricted 11.73 Metagenome 3300023028 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-305 DOE Joint Genome Institute (JGI) 3300023028 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Unclassified Plant litter Unclassified leaf litter 40.2526 -123.026 84557709 157776 15 13 26 27 SRX4392439 Unrestricted 52.26 Metagenome 3300047374 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_160803.NP2 DOE Joint Genome Institute (JGI) 3300047374 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 733049284 1448246 440 58 638 111 Unrestricted 13.61 Metagenome 3300049457 *Microbiome Permanent Draft Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA - 6_s_oct_JRB_CZO DOE Joint Genome Institute (JGI) 3300049457 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dawsonfairbanks@email.arizona.edu Dawson Fairbanks No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.88299428 -106.5342526 1072752437 1788022 311 10 539 13 Unrestricted 14.65 Metagenome 3300010032 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from El Islote,Puerto Morelos, Mexico - Siderastrea C C metagenome DOE Joint Genome Institute (JGI) 3300010032 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes momedinamunoz@gmail.com Medina Medina No Host-associated Invertebrates Coral Cnidaria Unclassified Coral 20.9267 -86.8313 1206958127 1726296 50 152 61 335 SRX2525635 Unrestricted 0.0 Metagenome 3300003484 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_750_biof DOE Joint Genome Institute (JGI) 3300003484 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 218046762 321182 103 14 173 35 SRX2867324, SRX2867325 Unrestricted 0.0 Metagenome 3300001154 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 DOE Joint Genome Institute (JGI) 3300001154 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 116611990 290587 198 15 306 31 SRX3312437 Unrestricted 0.0 Metagenome 3300007810 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763961826 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007810 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 47416732 95690 34 0 64 1 0.0 Metagenome 3300037176 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 S3 20-24 DOE Joint Genome Institute (JGI) 3300037176 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 618557998 1065218 216 4 301 7 SRX8144832 Unrestricted 12.32 Metagenome 3300049738 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_120307.NP2 DOE Joint Genome Institute (JGI) 3300049738 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 268669431 580566 234 24 366 41 Unrestricted 11.73 Metagenome 3300048135 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_160525.NP1 DOE Joint Genome Institute (JGI) 3300048135 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 636592834 1389056 398 60 597 113 Unrestricted 12.97 Metagenome 3300005086 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Hydrocarbon microbial Community from Halfdan Field, North Sea, Denmark - MHDA3 Shell Corporation 3300005086 Metagenome Analysis megahit Released on PI's request No Yes ebalsop@lbl.gov Eric Alsop No Environmental Aquatic Deep subsurface Marine Hydrocarbon Water 55.49 7.42 845114787 2436270 4260 25 6800 77 0.0 Metagenome 3300022797 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S3 Version 2 University of New South Wales 3300022797 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 47274652 81382 13 5 23 6 0.0 Metagenome 3300042587 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A14 University of California, Davis 3300042587 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 195866140 550692 285 5 508 17 0.0 Metagenome 3300034631 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Kastovskya adunca ATA6-11-RM4 and co-occurring heterotrophs from soil from Atacama Desert, Chile - 20181212_24i DOE Joint Genome Institute (JGI) 3300034631 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Soil crust Soil Physical Soil -26.1119 -70.6479 92017551 125952 55 0 45 0 SRX8239131 Unrestricted 133.09 Metagenome 3300001638 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF039 DOE Joint Genome Institute (JGI) 3300001638 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 2032065 7017 39 12 37 22 SRX2014390 Unrestricted 0.0 Metagenome 3300044641 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME30Sep2004-rr0934 DOE Joint Genome Institute (JGI) 3300044641 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1048223064 1682241 335 24 450 28 Unrestricted 21.68 Metagenome 3300045082 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Plains ecozone, Canada - Lake 04-581 Genome Quebec 3300045082 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 67.432054 -134.851562 1242181083 2888006 499 158 780 302 0.0 Metagenome 3300001373 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin YB-Mouth-sed University of South Carolina 3300001373 Metagenome Analysis Velvet released per JGI data release policy No Yes mariyasmit@hotmail.com Mariya Smit, Mariya W. Smit No Environmental Aquatic Intertidal zone Marine Sediment Marine estuarine 46.17469 -123.84933 6.6 322537715 576268 284 23 542 27 0.0 Metagenome 3300042084 *Microbiome Permanent Draft Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - D_a7.2 Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042084 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1237 -89.1404 755427597 802893 3 6 5 10 SRX5234791 0.0 Metagenome 3300022862 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0908-MG DOE Joint Genome Institute (JGI) 3300022862 Metagenome Analysis spades v. 3.11.1 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 227520379 376175 190 2 223 1 SRX4369994 Unrestricted 27.92 Metagenome 3300025864 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-212 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025864 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2905 -156.788708 746353554 1478583 525 4 855 9 SRX1990903 Unrestricted 0.0 Metagenome 3300014628 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00403 Weill Cornell Medical College 3300014628 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.74 -73.94 18747686 27988 19 3 21 4 SRX822374 0.0 Metagenome 3300027435 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G05K3-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300027435 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 38902648 121560 136 4 243 8 SRX1991295 Unrestricted 0.0 Metagenome 3300007996 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765620695 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007996 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 151884047 199585 96 0 108 0 0.0 Metagenome 3300038538 *Microbiome Permanent Draft Seawater viral communities from Osaka Bay, Japan Seawater viral communities from Osaka Bay, Japan - OBV_V8 Kyoto University 3300038538 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Seawater 34.1928 135.0715 4348597 10060 0 2 3 2 0.0 Metagenome 3300022570 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 18 Selected contigs with viral hallmark genes Autonomous University of Barcelona 3300022570 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 1098202 1714 0 0 0 0 0.0 Metagenome 3300025217 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from East of Antigua and Barbuda, Atlantic Ocean - MP2497 (SPAdes) DOE Joint Genome Institute (JGI) 3300025217 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 17.43 -59.83 85483460 148666 70 14 96 19 SRX1981970 Unrestricted 0.0 Metagenome 3300006472 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular creasemicrobial communities from NIH, USA - visit 1, subject 404239096 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300006472 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 14568637 26549 7 1 12 4 SRX024056 0.0 Metagenome 3300000150 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 120m DOE Joint Genome Institute (JGI) 3300000150 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 111823186 222106 69 1 133 4 Unrestricted 0.0 Metagenome 3300012876 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - 3B3 metaG DOE Joint Genome Institute (JGI) 3300012876 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; wswingley@niu.edu Ramunas Stepanauskas; Wesley Swingley No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 41.6655 -87.5437 13-14 20530517 61583 138 1 243 7 SRX3296574 Unrestricted 1133.06 Metagenome 3300019707 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BLC_0-1_MG DOE Joint Genome Institute (JGI) 3300019707 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 100788703 248384 226 30 392 39 SRX3983340 Unrestricted 3.7 Metagenome 3300003971 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Enrichment cultures from Harmful Algal Blooms in Lake Erie HABS-00-39867 University of Michigan 3300003971 Metagenome Analysis IDBA-UD v1.1.1 released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lentic Freshwater Unclassified Freshwater -77.611214 163.119356 99959214 136677 47 3 47 1 0.0 Metagenome 3300028258 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepB_8d DOE Joint Genome Institute (JGI) 3300028258 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 133499650 279714 140 18 212 15 SRX5245455 Unrestricted 15.93 Metagenome 3300023720 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_50B University of California, Irvine 3300023720 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 109935000 106683 15 0 18 0 0.0 Metagenome 3300070853 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Treehaven, Wisconsin, USA - TREE_006-M-20200708-COMP-DNA1 3300070853 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 24317397 76426 99 2 194 5 0.0 Metagenome 3300033742 *Microbiome Permanent Draft Extreme environments viral communities from various locations Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawater DOE Joint Genome Institute (JGI) 3300033742 Metagenome Analysis spades v. 3.12.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Coastal Marine Brine sea-ice brine 71.2943 -156.7153 341683256 916758 14 13 29 27 SRX7525082 Unrestricted 44.49 Metagenome 3300020192 *Microbiome Permanent Draft Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica- Oligotrophic Lake LV.19.MP6.G1 DOE Joint Genome Institute (JGI) 3300020192 Metagenome Analysis spades v. 3.10.1 Yes Yes dysumner@ucdavis.edu Dawn Sumner No Environmental Aquatic Lake Freshwater Microbial mats freshwater microbial mat -77.5281 161.59 1271744491 2156632 631 57 983 80 SRX3539172 Unrestricted 21.58 Metagenome 3300052659 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Photosynthetic mat viral communities from Octopus Spring, YNP, Wyoming, United States - OS20070728 OST2core DOE Joint Genome Institute (JGI) 3300052659 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.53408 -110.7979 18022248 28877 10 2 10 3 Unrestricted 780.55 Metagenome 7000000364 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 706846339 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000364 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 107414667 211521 0 0 0 0 0.0 Metagenome 3300010159 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 DOE Joint Genome Institute (JGI) 3300010159 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Host-associated Plants Rhizosphere Roots Soil Vadose zone soil 39.7291 -123.6419 819008858 1835161 481 47 997 93 SRX2933109 Unrestricted 0.0 Metagenome 3300004951 *Microbiome Permanent Draft Marine and wastewater microbial communities from Korea, with extracellular vesicles Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-EVs Chunlab, Inc 3300004951 Metagenome Analysis IDBA-1.1.1 released per JGI data release policy No Yes s-jkim@kiost.ac Sang-Jin Kim No Environmental Aquatic Oceanic Marine Unclassified Marine water 37.0 131.0 77184655 221239 1 0 1 0 0.0 Metagenome 3300047398 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Tapajos River, Santarem, Brazil - ROCA161 DOE Joint Genome Institute (JGI) 3300047398 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater -2.4843 -55.0075 30904581 83551 64 2 107 7 Unrestricted 101.36 Metagenome 7000000023 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 763435843 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000023 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 9037882 12066 0 0 0 0 SRX025201 0.0 Metagenome 3300036453 *Microbiome Permanent Draft Extreme environments viral communities from various locations Glacier ice viral communities from Ngari, Tibet, China - 35_GP2_29.3 DOE Joint Genome Institute (JGI) 3300036453 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Ice Freshwater Glacier ice 35.2833 81.4833 80993082 157081 58 9 102 15 SRX8168482 Unrestricted 29.89 Metagenome 3300049030 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - B8_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049030 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 315827515 713890 373 24 699 33 Unrestricted 0.0 Metagenome 3300038417 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P11_D10 DOE Joint Genome Institute (JGI) 3300038417 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 752669310 1040556 262 4 348 8 SRX9404377 Unrestricted 45.2 Metagenome 3300035458 *Microbiome Permanent Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - RDC-1_at_3-4_cm Genome Quebec 3300035458 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.80159 -73.41443 750880114 1816722 790 16 1627 19 0.0 Metagenome 3300007886 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 159571453 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007886 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 5667118 12569 9 0 9 0 SRX023250, SRX023251 0.0 Metagenome 3300010005 *Microbiome Permanent Draft Microbial communities associated with xenic strain Fischerella muscicola UTEX 1829 Microbial communities associated with xenic strain Fischerella muscicola UTEX 1829 Oregon State University 3300010005 Metagenome Analysis Spades 3.7 released per JGI data release policy No Yes benjamin.philmus@oregonstate.edu Benjamin Philmus No Environmental Aquatic Unclassified Sediment Unclassified sediment 125595532 189556 51 0 68 0 0.0 Metagenome 3300002298 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 08JUN2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002298 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 31350106 78692 66 4 122 16 SRX1989775 Unrestricted 0.0 Metagenome 3300048102 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_200909.NP1 DOE Joint Genome Institute (JGI) 3300048102 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 712722033 1569927 439 103 643 174 Unrestricted 10.69 Metagenome 3300052895 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Colorado, USA - BV_H2_S1 DOE Joint Genome Institute (JGI) 3300052895 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 40.99171 -106.60518 6751395 14731 36 6 55 7 Unrestricted 234.0 Metagenome 3300069587 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Barrow Environmental Observatory, Tundra, AK, USA - BARR_053-O-20170808-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069587 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 71.28241 -156.61936 18255949 55705 71 4 92 5 0.0 Metagenome 3300034129 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_16 DOE Joint Genome Institute (JGI) 3300034129 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9096 -147.9451 762576419 1934008 676 36 1183 60 SRX7633846 Unrestricted 7.1 Metagenome 3300024447 *Microbiome Permanent Draft Vaginal microbial communities from lab mice Vaginal microbial communities from lab mice with HSV-2 infection, Madrid, Spain - G2-S16 treatment D1, day 1 Polytechnic University of Valencia 3300024447 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Vagina Reproductive system Unclassified mice vagina 40.4191094 -3.6725753 662227 1092 0 0 0 0 0.0 Metagenome 3300039349 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 195_B Beijing Genomics Institute (BGI) 3300039349 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 20580197 26002 17 0 26 0 ERX490991 0.0 Metagenome 3300027567 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027567 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 308616746 756968 229 78 438 143 SRX3312028 Unrestricted 0.0 Metagenome 3300012957 *Microbiome Permanent Draft Amended soil microbial communities from New York, USA to study carbon cycling Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG DOE Joint Genome Institute (JGI) 3300012957 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes twhitman@wisc.edu Thea Whitman No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.4531 -76.3842 2285230312 5496039 2183 79 4000 175 SRX3566525 Unrestricted 4.88 Metagenome 3300069355 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_045-M-20170627-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069355 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 75108262 218410 146 17 317 27 0.0 Metagenome 3300000332 *Microbiome Permanent Draft Bovine rumen microbial communities from Waikato, New Zealand Bovine rumen microbial communities from Waikato, New Zealand Macrogen 3300000332 Metagenome Analysis Unknown Released per request from Milica Ciric - March 10 2014 No Yes christina.moon@agresearch.co.nz Christina Moon No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -37.76549 175.363764 0 0 0 0 0 0 0.0 Metagenome 3300012665 *Microbiome Permanent Draft Freshwater microbial communities from rivers and streams along an organic matter gradient associated with agriculture in Ontario, Canada Freshwater microbial communities from Talbot River, Ontario, Canada - S11 Molecular Research LP (MR DNA) 3300012665 Metagenome Analysis metaSPAdes released by JGI data releasing policy No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Unclassified Freshwater 44.4982 -79.1546 8.45 276280111 850053 69 8 117 11 0.0 Metagenome 3300028572 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_1 DOE Joint Genome Institute (JGI) 3300028572 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 683583674 1592527 447 133 673 208 SRX5281090 Unrestricted 0.0 Metagenome 3300028860 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_3 DOE Joint Genome Institute (JGI) 3300028860 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 549339405 1152753 252 32 376 64 SRX5799204 Unrestricted 0.0 Metagenome 3300050165 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D20_RHK2_2_to_SEK2 DOE Joint Genome Institute (JGI) 3300050165 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.245 70859302 188976 140 41 211 78 Unrestricted 46.86 Metagenome 3300069569 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_001-M-20170619-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069569 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 116578990 338512 149 18 267 27 0.0 Metagenome 3300027589 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_8d DOE Joint Genome Institute (JGI) 3300027589 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 151331079 275334 86 2 122 6 SRX5245246 Unrestricted 23.6 Metagenome 7000000580 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 764487809 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000580 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 47814 94 0 0 0 0 SRX024873 0.0 Metagenome 3300050118 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim1 40-44 DOE Joint Genome Institute (JGI) 3300050118 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.352987 19.047292 600068185 827265 125 1 195 1 Restricted 15.93 Metagenome 3300071002 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_004-M-20200712-COMP-DNA1 3300071002 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 28164283 83939 90 3 203 7 0.0 Metagenome 3300043705 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - Rondonia_Forest_1_A100m DOE Joint Genome Institute (JGI) 3300043705 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Unclassified Soil -10.169 -62.782 915828488 2364262 424 7 835 11 Unrestricted 9.33 Metagenome 3300040144 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_021-O-20170619-COMP-DNA1 Battelle Memorial Institute 3300040144 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 10759370 28681 73 9 139 16 0.0 Metagenome 3300043093 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - Beaver5Cecum1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043093 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.18 -122.54 221476556 463767 456 15 794 18 SRX8346442 Unrestricted 26.21 Metagenome 3300012618 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100490 University of Pennsylvania 3300012618 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 21356886 46701 24 0 28 0 SRX756508 0.0 Metagenome 3300029765 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 050_3_10_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029765 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 186132733 241202 215 0 284 0 0.0 Metagenome 3300028168 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_50m DOE Joint Genome Institute (JGI) 3300028168 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 380110057 733962 478 1 742 2 SRX5244716 Unrestricted 14.95 Metagenome 3300000260 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P20_500 DOE Joint Genome Institute (JGI) 3300000260 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 49.566667 -138.666667 117112345 299546 80 13 179 21 Unrestricted 0.0 Metagenome 3300034145 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 59SNS DOE Joint Genome Institute (JGI) 3300034145 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Sub-biocrust Soil Unclassified sub-biocrust soil 34.3778 -117.6098 246196965 588693 430 19 754 37 SRX7621481 Unrestricted 8.97 Metagenome 3300019823 *Microbiome Permanent Draft Microbial mat bacterial communities from Rhone River delta, Camargue, France Microbial mat bacterial communities from Rhone River delta, Camargue, France - 6 University of Barcelona 3300019823 Metagenome Analysis velvet released by Mercedes Berlanga No Yes mberlanga@ub.edu Mercedes Berlanga No Environmental Aquatic Unclassified Sediment Unclassified Microbial mats 43.6 4.6 30851130 84961 39 1 79 1 0.0 Metagenome 3300070672 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Virginia, USA - BLAN_007-M-20200713-COMP-DNA1 3300070672 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 4036045 13530 34 5 57 4 0.0 Metagenome 3300048641 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from North Pacific Ocean - CTD-AT42-06-010-45m-0.65 DOE Joint Genome Institute (JGI) 3300048641 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 9.84014 -104.29177 520989850 867041 262 42 422 59 Unrestricted 35.09 Metagenome 3300045061 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Plains ecozone, Canada - Lake 04-572 Genome Quebec 3300045061 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 67.332779 -134.844522 1153854497 2672263 365 85 588 169 0.0 Metagenome 3300000451 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O3 DOE Joint Genome Institute (JGI) 3300000451 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 1029583 2826 48 43 93 72 SRX1985374, SRX2021674 0.0 Metagenome 3300042401 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME10May2008-rd0212 DOE Joint Genome Institute (JGI) 3300042401 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 929751782 1495397 294 92 324 105 Unrestricted 25.26 Metagenome 3300015208 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Storglaciaren, Tarfala, Sweden (Samples st-15,16,16 pooled, 1st-3rd transect points, snow/rock/ice interface) University of Bristol 3300015208 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.903128 18.604355 7.2 377436650 742005 190 11 338 19 0.0 Metagenome 3300021384 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 DOE Joint Genome Institute (JGI) 3300021384 Metagenome Analysis spades v. 3.11.1-check Yes Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Host-associated Plants Unclassified Roots Unclassified plant roots -19.2822 -43.5936 1620777627 3779686 945 69 1665 111 SRX4939668 Unrestricted 8.86 Metagenome 3300010269 *Microbiome Permanent Draft Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 13_49_3.3_201_A3 metaG DOE Joint Genome Institute (JGI) 3300010269 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes Steve.Brown@lanzatech.com Steven Brown Yes 30202438 Engineered Bioreactor Anaerobic Semi-continuous Digestate Switchgrass degrading 43.726 -72.1429 254132805 399001 483 3 684 1 SRX3290142 Unrestricted 0.0 Metagenome 3300028115 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501CT (spades assembly) DOE Joint Genome Institute (JGI) 3300028115 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 938309331 1740312 397 75 698 122 SRX5244121 Unrestricted 31.13 Metagenome 3300045941 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P24SSC2_190915_c DOE Joint Genome Institute (JGI) 3300045941 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 884985927 1379466 284 3 407 2 SRX20650049 Unrestricted 12.15 Metagenome 3300029718 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36244 Beijing Genomics Institute (BGI) 3300029718 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 254020258 352762 276 1 339 2 0.0 Metagenome 3300022881 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24 DOE Joint Genome Institute (JGI) 3300022881 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0471 152954916 364541 102 3 157 7 SRX4415330, SRX8128005 Unrestricted 0.0 Metagenome 3300005651 *Microbiome Permanent Draft Genome and metagenome analysis of marine red algae Porphyra Marine algae microbial communities from Blueberry Hill - Blueberry Hill, Maine DOE Joint Genome Institute (JGI) 3300005651 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos because they are over 3 years old Yes Yes brawley@maine.edu, Brawley@maine.edu Susan Brawley No Host-associated Algae Blade Red algae Unclassified marine 44.342 -68.065 592481302 1478489 529 57 755 71 Unrestricted 0.0 Metagenome 3300024258 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_120_MG DOE Joint Genome Institute (JGI) 3300024258 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca; shallam@interchange.ubc.ca Sean Crowe; Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5847 -123.5008 524554710 963537 361 6 525 20 SRX4488141 Unrestricted 56.61 Metagenome 3300010287 *Microbiome Permanent Draft Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 5_19_20_110_A1 metaG DOE Joint Genome Institute (JGI) 3300010287 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes Steve.Brown@lanzatech.com Steven Brown Yes 30202438 Engineered Bioreactor Anaerobic Semi-continuous Digestate Switchgrass degrading 43.726 -72.1429 323556227 511274 690 4 993 8 SRX3290038 Unrestricted 0.0 Metagenome 3300046359 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_28 DOE Joint Genome Institute (JGI) 3300046359 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 186647045 508560 508 98 945 152 Restricted 0.0 Metagenome 2044078016 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Singapore and Univ of Illinois at Urbana, that are terephthalate-degrading Wastewater bioreactor microbial communities from Singapore - Sample 372 DOE Joint Genome Institute (JGI) 2044078016 Metagenome Analysis not assembled released per Simon -- IMGSUPP2949 No Yes sgtringe@lbl.gov Susannah Tringe Yes 20686509 Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater bioreactor 1.29973 103.771791 38673482 100003 66 0 94 0 0.0 Metagenome 3300008743 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159591683 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008743 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 191034425 304575 149 0 190 0 0.0 Metagenome 3300022149 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (v3) (version 3) DOE Joint Genome Institute (JGI) 3300022149 Metagenome Analysis spades v. 3.11.1-check Yes Yes bcampb7@clemson.edu Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 38.9819 -76.3716 26203859 80909 0 0 0 0 SRX2753470, SRX5209302 Unrestricted 0.0 Metagenome 3300040377 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_049-O-20170621-COMP-DNA1 Battelle Memorial Institute 3300040377 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 6021750 18432 61 27 103 42 0.0 Metagenome 3300023278 *Microbiome Permanent Draft Sediment microbial communities from Stefan Fjord, Tortel, Patagonia, Chile Sediment microbial communities from Stefan Fjord, Tortel, Patagonia, Chile - Sample 2 University of Bristol 3300023278 Metagenome Analysis SPADES v. 3.11.1 released by JGI data releasing policy No Yes maisie.nash@bristol.ac.uk Maisie Nash No Environmental Aquatic Unclassified Sediment Unclassified sediment -47.679133 -73.71465 7.647 174470052 216382 32 3 29 5 0.0 Metagenome 3300011675 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00309 Weill Cornell Medical College 3300011675 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway 40.72 -74.0 19374400 26917 11 0 15 0 SRX822282 0.0 Metagenome 3300035247 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Soil microbial communities from Oregon, United States - Field_Oregon_2 DOE Joint Genome Institute (JGI) 3300035247 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Environmental Terrestrial Agricultural land Soil Bulk soil soil 46.1125 -122.987 911798771 2219694 662 25 1167 39 SRX8290807 Unrestricted 7.27 Metagenome 3300026631 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Lab enriched deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Halanaerobium induction (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026631 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 2792782 3003 6 0 9 0 SRX2752458 Unrestricted 0.0 Metagenome 3300046518 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere DOE Joint Genome Institute (JGI) 3300046518 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.588 -123.194 597482282 976630 253 79 429 116 Unrestricted 21.3 Metagenome 3300009533 *Microbiome Permanent Draft Host-associated microbial communities of aphids from plants in several locations around USA Microbial communities of aphids from Crataegus sp. in NC, USA - Muscaphis stroyani CVD02-21 seqcov University of Texas, Austin 3300009533 Metagenome Analysis CLC Genomics released per JGI data release policy Yes Yes becky.chong@utexas.edu Rebecca Chong No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Crataegus sp. 36.127687 -81.823236 227571768 123603 1 1 1 1 0.0 Metagenome 3300031838 *Microbiome Permanent Draft Soil and ectomycorrhiza microbial communities from Populus trichocarpa stands in riparian zones in the Pacific Northwest, United States Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM DOE Joint Genome Institute (JGI) 3300031838 Metagenome Analysis spades v. 3.13.0 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Plants Unclassified Roots Unclassified ectomycorrhiza 47.6684 -121.924 1177548044 1552041 171 111 225 147 SRX5803314 Unrestricted 27.82 Metagenome 3300004014 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLA_D2 DOE Joint Genome Institute (JGI) 3300004014 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.197102 -122.010033 1108941251 3430700 1136 17 2334 38 SRX7142750 Unrestricted 0.0 Metagenome 3300023712 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Bagasse, Gen0, Rep 2 Spades (v2) (version 2) DOE Joint Genome Institute (JGI) 3300023712 Metagenome Analysis MEGAHIT v. 1.0.6 No Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4148 -119.8405 391104836 840431 346 8 564 14 SRX3962664 Unrestricted 0.0 Metagenome 7000000478 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 737052003 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000478 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 399049 1095 0 0 0 0 SRX024172 0.0 Metagenome 3300037137 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL18G_12-S DOE Joint Genome Institute (JGI) 3300037137 Metagenome Analysis metaspades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5106 -110.3566 2351943607 3699875 967 6 1606 9 SRX8273853 Unrestricted 15.25 Metagenome 3300025371 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypoxic/sulfidic aquatic microbial communities from Monarch Geyser, Yellowstone National Park, USA - MG (SPAdes) v2 (version 3) DOE Joint Genome Institute (JGI) 3300025371 Metagenome Analysis spades v. 3.11.1 Yes Yes jim.fredrickson@pnnl.gov; binskeep@montana.edu Jim Fredrickson; William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hypoxic/sulfidic aquatic 44.376 -110.69 103659429 229316 36 0 42 0 SRX2553563 Unrestricted 0.0 Metagenome 3300066302 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONZ_002-M-20170710-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066302 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.10077 -96.56309 43283624 128410 165 12 275 21 0.0 Metagenome 3300000858 *Microbiome Permanent Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil v2 (version 2) DOE Joint Genome Institute (JGI) 3300000858 Metagenome Analysis Velvet released based on JGI ITS Yes Yes janet.jansson@pnnl.gov Janet Jansson Yes 30158906 Environmental Terrestrial Unclassified Soil Grasslands Soil 43.312222 -89.370833 7.8 581758822 2215907 1001 42 2480 72 Unrestricted 0.0 Metagenome 3300042808 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Enriched soil microbial communities from Old Woman Creek wetland in Ohio, USA - Methanogen_OWC NMDC pilot DOE Joint Genome Institute (JGI) 3300042808 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified Enriched soil 40.178 -81.073 719934862 1701294 869 9 1765 9 SRX2925912 0.0 Metagenome 3300049443 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 soil DOE Joint Genome Institute (JGI) 3300049443 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.587809 -123.193624 6.81 378662396 702960 251 17 491 23 Unrestricted 20.83 Metagenome 2014613002 *Microbiome Permanent Draft Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) - 1_Upper_euphotic_10m DOE Joint Genome Institute (JGI) 2014613002 Metagenome Analysis No Yes delong@mit.edu, delong@mit.edu; subhash353@gmail.com Edward DeLong, Edward DeLong; Subhash Yadav Yes 16439655 Environmental Aquatic Oceanic Marine Photic zone Marine 22.45 -158.0 7482595 11252 4 0 0 0 0.0 Metagenome 3300026096 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3651_4511 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026096 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic 3.5037 -38.9985 45665423 66638 42 6 38 12 SRX2753930 Unrestricted 0.0 Metagenome 3300045513 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Cordillera ecozone, Canada - Lake 13-560 Genome Quebec 3300045513 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 58.430235 -130.001241 827778538 1956977 373 128 661 211 0.0 Metagenome 3300004233 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 92_HOW11 DOE Joint Genome Institute (JGI) 3300004233 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 99787264 231987 43 0 84 0 SRX2721167 Unrestricted 0.0 Metagenome 3300050255 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_6 DOE Joint Genome Institute (JGI) 3300050255 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.598 161.007 531929425 951952 126 36 172 54 SRX18235971 Restricted 21.16 Metagenome 3300033232 *Microbiome Permanent Draft Microbial communities from various locations in Russia Mud volcano microbial communities from Karabetova Gora, Taman Peninsula, Russia - Taman1 Baltic Federal University 3300033232 Metagenome Analysis spades v. 3.13.0 released by JGI data releasing policy No Yes kublanov.ilya@gmail.com Ilya V. Kublanov No Environmental Terrestrial Unclassified Mud volcano Unclassified mud volcano 45.202 36.783 8 423706693 770985 376 6 524 18 0.0 Metagenome 3300011903 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00991 Weill Cornell Medical College 3300011903 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.6 -73.76 45858915 84597 37 2 42 4 SRX822953 0.0 Metagenome 3300021560 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama - MetaG Plot_4 DOE Joint Genome Institute (JGI) 3300021560 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes cpan@ou.edu Chongle Pan No Environmental Terrestrial Tropical forest Soil Bulk soil Tropical forest soil 9.1086 -79.8436 5615082450 11980537 2249 184 3969 295 SRX3787656 Unrestricted 0.0 Metagenome 3300022488 *Microbiome Permanent Draft Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain - individual 15 Autonomous University of Barcelona 3300022488 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.38 -0.51 20290665 25879 20 0 22 0 0.0 Metagenome 3300034417 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Sediment microbial communities from East River floodplain, Colorado, United States - 17_s17 DOE Joint Genome Institute (JGI) 3300034417 Metagenome Analysis metaspades v. 3.13.0 Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Aquatic Sediment Floodplain Unclassified sediment 38.9229 -106.9499 430794700 1116016 398 10 750 21 SRX7631467 Unrestricted 6.95 Metagenome 3300029319 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516 CEA Genoscope 3300029319 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 23.36 37.2183 298755735 608642 12 2 24 4 0.0 Metagenome 3300014566 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS58_18 University of Hohenheim 3300014566 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 111750956 180916 78 0 136 0 0.0 Metagenome 3300017446 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_03OCT2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017446 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 249528759 513975 270 141 399 269 SRX3927219 Unrestricted 5.93 Metagenome 3300013113 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 103m, 250-2.7um, replicate a Georgia Genomics Facility 3300013113 Metagenome Analysis IDBA 1.1.1 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 301689847 382904 154 156 196 175 0.0 Metagenome 3300002363 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002363 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 27897756 73446 63 4 113 9 SRX1989911 Unrestricted 0.0 Metagenome 3300002024 *Microbiome Permanent Draft Sinkhole freshwater microbial communities from Lake Huron, US Sinkhole freshwater microbial communities from Lake Huron, USA - Flux 1k-1.5k University of Michigan 3300002024 Metagenome Analysis IDBA UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Sinkhole Freshwater Unclassified Sinkhole freshwater 45.19843 -83.32721 218067012 365322 80 25 136 23 0.0 Metagenome 3300029558 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P109V6 Beijing Genomics Institute (BGI) 3300029558 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 167639005 214229 126 0 185 0 0.0 Metagenome 3300011223 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00506 Weill Cornell Medical College 3300011223 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.88 -73.86 39836411 61005 19 0 19 0 SRX822475 0.0 Metagenome 3300029086 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 172_B Beijing Genomics Institute (BGI) 3300029086 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 56419625 57709 22 0 35 0 ERX490967 0.0 Metagenome 3300056782 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA35 DOE Joint Genome Institute (JGI) 3300056782 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 209380287 504757 304 10 670 8 Restricted 0.0 Metagenome 3300013599 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00765 Weill Cornell Medical College 3300013599 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -73.95 9132754 9352 5 0 7 0 SRX822731 0.0 Metagenome 3300070390 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_033-O-20190715-COMP-DNA1 3300070390 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 5839094 19567 59 1 107 2 0.0 Metagenome 3300039238 *Microbiome Permanent Draft Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada - low-flow bush ECw9 Dalhousie University 3300039238 Metagenome Analysis Megahit v. 1.2.8 released by JGI data releasing policy No Yes smurdock@uvic.ca Sheryl Murdock No Environmental Aquatic Hydrothermal vents Marine Tubeworm bush tubeworm bush 47.963 -129.0915 2183 750071646 1127620 215 13 358 46 0.0 Metagenome 3300046758 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_180613.NP2 DOE Joint Genome Institute (JGI) 3300046758 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 536250940 1097278 330 75 463 122 Unrestricted 11.76 Metagenome 2149837011 *Microbiome Permanent Draft Freshwater microbial communities from LaBonte Lake, Laramie, Wyoming, USA Fresh water microbial communities from LaBonte Lake, Laramie, Wyoming, sample from post-bloom DOE Joint Genome Institute (JGI) 2149837011 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes sgtringe@lbl.gov, nlward@uwyo.edu Susannah Tringe, Naomi Ward No Environmental Aquatic Lake Freshwater Algal bloom Freshwater 41.321 -105.586 57916305 144065 206 27 236 0 Unrestricted 0.0 Metagenome 3300020316 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_A100001234 (ERX555946-ERR599134) CEA Genoscope 3300020316 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 22.1283 38.1967 242251973 614689 176 13 304 21 0.0 Metagenome 3300011866 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00272 Weill Cornell Medical College 3300011866 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.98 45702412 71520 16 0 26 0 SRX822245 0.0 Metagenome 3300003590 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI072_LV_165m_DNA DOE Joint Genome Institute (JGI) 3300003590 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 96786956 188451 102 10 191 12 Unrestricted 0.0 Metagenome 3300045199 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_4_F DOE Joint Genome Institute (JGI) 3300045199 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 181064133 213750 106 1 135 2 Unrestricted 93.19 Metagenome 3300070847 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_044-O-20170719-COMP-DNA1 3300070847 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 56423434 166628 104 4 196 7 0.0 Metagenome 3300007165 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Fresh water mixed with fracking chemicals microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 DOE Joint Genome Institute (JGI) 3300007165 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Engineered Industrial production Input fracking water Chemical products Unclassified Fresh water mixed with fracking chemicals 40.178 -81.073 286162784 730820 280 34 543 69 SRX2925625 Unrestricted 0.0 Metagenome 3300016669 *Microbiome Permanent Draft Industrial fuel microbial communities from aircraft samples near Hamburg, Germany Industrial fuel microbial communities from aircraft samples near Hamburg, Germany - 150824_02 HPI Heinrich-Pette-Institut 3300016669 Metagenome Analysis IDBA_UD1.1.1 released by JGI data releasing policy No Yes wolfgang.streit@uni-hamburg.de; ines.krohn@uni-hamburg.de Wolfgang Streit; Ines KROHN No Engineered Industrial production Unclassified Engineered product Unclassified Industrial fuel 53.338 9.5152 113956573 155864 36 9 39 30 0.0 Metagenome 3300055522 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.2W.9 SIP fraction DOE Joint Genome Institute (JGI) 3300055522 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 310463795 563923 301 23 398 36 Unrestricted 15.54 Metagenome 7000000625 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 686765762 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000625 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 32456199 67257 0 0 0 0 0.0 Metagenome 3300011428 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT615_2 DOE Joint Genome Institute (JGI) 3300011428 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9778 -107.0028 359326217 859197 512 17 949 35 SRX3539351 Unrestricted 0.0 Metagenome 3300004757 *Microbiome Permanent Draft Metagenomics analysis of sediments collected from Formosa Ridge Marine sediment microbial communities from Formosa Ridge, offshore Taiwan - G2-2 Beijing Genomics Institute (BGI) 3300004757 Metagenome Analysis SOAPdenovo (version 1.05) released per JGI data release policy No Yes mclai01@gmail.com Mei-Chin Lai No Environmental Aquatic Cold seeps Marine Sediment marine sediment 22.10811667 119.29126667 4756138 10305 16 2 25 1 0.0 Metagenome 3300049248 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA6 DOE Joint Genome Institute (JGI) 3300049248 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 333900264 863281 457 4 816 7 Unrestricted 7.14 Metagenome 3300026129 *Microbiome Permanent Draft Utah desert microbiome from environmental samples near Hanksville, Utah, USA Dry sediment microbial communities from Utah desert near Hanksville, Utah, USA - N McGill University 3300026129 Metagenome Analysis canu v. 1.7 released by Catherine Maggiori No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Terrestrial Unclassified Soil Desert Dry sediment 38.41538991 -110.78677342 11963727 16539 0 0 1 0 0.0 Metagenome 3300012511 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_10 DOE Joint Genome Institute (JGI) 3300012511 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Environmental Terrestrial Unclassified Soil Unclassified soil 35.9076 -79.0506 172460209 453618 256 5 563 18 SRX3527429 Unrestricted 0.0 Metagenome 2166559019 *Microbiome Permanent Draft Stentor amethystinus microbial communities from Lake Stechlin, Germany Stentor MTG 1 Leibniz Institute 2166559019 Metagenome Analysis newbler released per JGI data release policy No Yes mallgaier@igb-berlin.de Martin Allgaier No Environmental Aquatic Lake Freshwater Unclassified Stentor amethystinus 53.144075 13.02274 20075836 44413 15 21 14 26 0.0 Metagenome 3300006660 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T10 (3) BES Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006660 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 32498926 58160 43 0 62 0 0.0 Metagenome 3300036447 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C5-9B DOE Joint Genome Institute (JGI) 3300036447 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 102336086 329305 248 8 418 11 SRX8803418 Unrestricted 4.39 Metagenome 3300020564 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 30JUL2009 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020564 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 196178309 430739 211 44 302 67 SRX1987801 Unrestricted 0.0 Metagenome 3300041441 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_1 MetaG AgResearch, New Zealand, Mosgeil 3300041441 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Rhizoplane Roots Dairy farm pasture -43.648506 172.343549 454865777 1029888 240 28 778 60 0.0 Metagenome 3300007118 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Upa-Upasina ""control"", co14ic" University of New South Wales 3300007118 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au, n.webster@aims.gov.au; e.botte@aims.gov.au Nicole Webster, Nicole Webster; Emmanuelle BOTTE No Host-associated Porifera Unclassified Unclassified Unclassified C. singaporensis (marine sponge) -9.828217 150.820517 182683688 425540 74 8 112 15 0.0 Metagenome 3300019697 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLC_3-4_MG DOE Joint Genome Institute (JGI) 3300019697 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 84162782 212621 210 17 384 32 SRX3983488 Unrestricted 3.39 Metagenome 3300041579 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_491 MetaG AgResearch, New Zealand, Mosgeil 3300041579 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1285095203 2656982 310 35 1128 53 0.0 Metagenome 3300012837 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched pill bug-associated microbial communities from UW Madison campus, WI, USA - HID1972I_E6 MG DOE Joint Genome Institute (JGI) 3300012837 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 97841674 133506 90 2 138 2 SRX3564643 Unrestricted 0.0 Metagenome 3300003777 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius filocauda PIANOSA.2 DOE Joint Genome Institute (JGI) 3300003777 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 366101730 893980 7 4 7 19 SRX3340611 Unrestricted 0.0 Metagenome 3300043424 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Dobson Creek, Boise, Idaho, USA - dobsoncreek_2019_sw_WHONDRS-S19S_0087 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043424 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 43.1231 -116.7745 776800991 1232853 252 134 353 173 Unrestricted 18.08 Metagenome 3300004106 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 0.2 um filter (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300004106 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu, jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield, Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 532534014 1275496 1371 17 2236 51 SRX2770551 Unrestricted 0.0 Metagenome 3300020231 *Microbiome Permanent Draft Deep-sea sediment microbial communities from the Pacific Ocean trenches Deep-sea sediment microbial communities from the Mariana Trench, Pacific Ocean - CR04 JGI facility at Oak Ridge National Laboratory 3300020231 Metagenome Analysis Megahit released by Logan Peoples No Yes lpeoples@ucsd.edu Logan Peoples No Environmental Aquatic Oceanic Marine Sediment sediment 12.47649 144.86485 859258187 1132731 239 1 327 1 0.0 Metagenome 3300045026 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Plains ecozone, Canada - Lake 04-579 Genome Quebec 3300045026 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 68.232838 -133.44037 1308951218 3208392 569 189 944 357 0.0 Metagenome 3300021109 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 29MAY2008 epilimnion DOE Joint Genome Institute (JGI) 3300021109 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 8783725 22864 22 7 33 17 Unrestricted 0.0 Metagenome 3300053090 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere DOE Joint Genome Institute (JGI) 3300053090 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.587953 -123.192965 736351650 1625620 449 91 755 151 Unrestricted 13.23 Metagenome 3300002527 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C27A4_80 DOE Joint Genome Institute (JGI) 3300002527 Metagenome Analysis Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 41671696 71703 105 29 184 40 SRX1990964 Unrestricted 0.0 Metagenome 3300018475 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet fungal communities from Santa Barbara, California, USA - pellet 1 DOE Joint Genome Institute (JGI) 3300018475 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4204 -119.6671 4308757852 7528181 8800 44 13632 51 SRX3963493 Unrestricted 12.66 Metagenome 3300014314 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleA_D2 DOE Joint Genome Institute (JGI) 3300014314 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jzz0026@lbl.gov; sgtringe@lbl.gov Jinglie Zhou; Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.052509 -121.76873 349343609 835852 514 6 891 6 SRX7181936 Unrestricted 0.0 Metagenome 3300056899 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F2P_30_32 DOE Joint Genome Institute (JGI) 3300056899 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.97683846 -81.7074257 1084361696 1595288 483 2 704 2 Unrestricted 16.14 Metagenome 3300043242 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from Nevada, United States - King's Pool (KP_S1) (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043242 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified Desert spring 36.4015 -116.2738 7.46 346331736 537870 182 6 302 12 SRX9167238 Unrestricted 79.68 Metagenome 3300069401 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_003-M-20170627-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069401 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 99075102 262224 151 9 333 14 0.0 Metagenome 3300035163 *Microbiome Permanent Draft Seawater and sediment microbial communities from various locations Seawater microbial communities from eastern tropical North Pacific Ocean - AMALJGI-DNA-4 DOE Joint Genome Institute (JGI) 3300035163 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bbw@princeton.edu Bess Ward No Environmental Aquatic Oceanic Marine Unclassified seawater 18.6893 -104.4164 630123996 1489414 396 76 661 112 SRX8377271 Unrestricted 19.58 Metagenome 3300046050 *Microbiome Permanent Draft Halite microbial communities from Atacama Desert, Chile Halite microbial communities from Yungay, Atacama Desert, Chile - YG1 Novogene 3300046050 Metagenome Analysis metaWRAP v. 1.3.2 No Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Halite Rock-dwelling (endoliths) Unclassified Halite -24.086 -69.904 172294527 206472 24 2 31 2 0.0 Metagenome 3300039433 *Microbiome Draft Thermal spring microbial communities of Baikal Rift zone, Russia Thermal alkaline spring microbial communities from Baikal Rift zone, Tyva, Ush-Beldyr, Russia - UG152 complete Baltic Federal University 3300039433 Metagenome Analysis Spades v. 3.10 released by JGI data releasing policy No Yes akorzhenkov@kantiana.ru Aleksei Korzhenkov No Environmental Aquatic Hot (42-90C) Thermal springs Alkaline Thermal spring 51.46897 98.05402 30609469 42422 16 0 26 0 0.0 Metagenome 2027040001 *Microbiome Permanent Draft Wastewater viral communities from wastewater treatment facility in Singapore Viral communities in wastewater treatment process (EF-no assembly) University of Illinois, Urbana-Champaign 2027040001 Metagenome Analysis not assembled released per JGI data release policy No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Wastewater Dissolved organics (anaerobic) Nutrient removal Activated sludge Wastewater 1.332 103.756 183839530 529210 5 0 5 0 0.0 Metagenome 3300053774 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_89 DOE Joint Genome Institute (JGI) 3300053774 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9236 -106.9499 396890652 1160479 1175 7 2169 17 Restricted 0.0 Metagenome 3300057150 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2021-2019 DOE Joint Genome Institute (JGI) 3300057150 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.70406 -83.25291 594760244 1195071 361 120 608 175 Unrestricted 15.95 Metagenome 3300043695 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - Rondonia_Pasture_2_B100m DOE Joint Genome Institute (JGI) 3300043695 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.17 -62.833 955740297 2439725 572 9 1076 15 Unrestricted 7.72 Metagenome 3300004831 *Microbiome Permanent Draft Marine surface microbial communities from the North Atlantic Ocean, enriched with methanesulfonate Marine surface microbial communities from the North Atlantic Ocean - filtered matter Molecular Research LP (MR DNA) 3300004831 Metagenome Analysis Megahit released per PI's request No Yes pmarco@ibmc.up.pt Paolo De Marco No Environmental Aquatic Coastal Marine Unclassified Surface seawater 41.226956 -8.720528 8.07 27429400 84353 69 8 106 8 0.0 Metagenome 3300041848 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_283 MetaG AgResearch, New Zealand, Mosgeil 3300041848 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 2216151970 4354402 332 32 1288 59 0.0 Metagenome 3300045237 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_5_D DOE Joint Genome Institute (JGI) 3300045237 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 204417584 234280 120 1 145 2 Unrestricted 150.84 Metagenome 3300020380 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B000000565 (ERX555945-ERR599058) CEA Genoscope 3300020380 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -17.0283 42.7449 824083504 2093368 396 27 743 62 ERX555945 0.0 Metagenome 3300012943 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY) DOE Joint Genome Institute (JGI) 3300012943 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes JMGladden@lbl.gov John Gladden No Environmental Terrestrial Unclassified Soil Unclassified soil 37.83 -122.29 2309353851 4684259 2123 370 3389 655 SRX4808931 Unrestricted 0.0 Metagenome 3300029010 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 275_M Beijing Genomics Institute (BGI) 3300029010 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 95064071 108901 78 0 106 0 ERX491062 0.0 Metagenome 3300070933 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_003-M-20191001-COMP-DNA1 3300070933 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 8137969 25710 43 0 99 1 0.0 Metagenome 3300056655 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.20C.13 SIP fraction DOE Joint Genome Institute (JGI) 3300056655 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 174644006 331829 103 57 181 109 Unrestricted 8.11 Metagenome 3300012324 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100577 University of Pennsylvania 3300012324 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 22823282 38487 20 0 25 0 SRX756177 0.0 Metagenome 3300021055 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos C3 DOE Joint Genome Institute (JGI) 3300021055 Metagenome Analysis spades v. 3.10.1 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Deep subsurface sediment 38.96 -106.99 96621018 295419 426 52 709 95 SRX4003225 Unrestricted 27.16 Metagenome 3300012063 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC077 MetaG DOE Joint Genome Institute (JGI) 3300012063 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 34.389 -79.0024 68422221 104343 13 15 35 38 SRX3539719 Unrestricted 0.0 Metagenome 3300011821 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00505 Weill Cornell Medical College 3300011821 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.88 -73.86 32971519 60827 30 1 48 0 SRX822474 0.0 Metagenome 3300001264 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY68 J. Craig Venter Institute (JCVI) 3300001264 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 1426429068 5125338 146 81 575 106 0.0 Metagenome 3300015322 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_09MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015322 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 178549604 321579 4 26 3 12 SRX3922221 Unrestricted 10.3 Metagenome 3300007822 *Microbiome Permanent Draft Permafrost core soil microbial communities from Svalbard, Norway Permafrost core soil microbial communities from Svalbard, Norway - sample 2-8-2 Soapdenovo Princeton University 3300007822 Metagenome Analysis soapdenovo1.06 released per JGI data release policy Yes Yes xue.ethan@gmail.com yaxin xue No Environmental Terrestrial Unclassified Soil Permafrost soil 78.11096 15.55294 50152519 71242 13 1 17 0 0.0 Metagenome 3300001817 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM56, ROCA_DNA136_2.0um_27k 3300001817 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River plume Marine Plankton Marine plankton 12.4145 -52.2197 4980358 13574 2 11 23 23 0.0 Metagenome 7000000494 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 158479027 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000494 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 115449092 203619 0 0 0 0 0.0 Metagenome 3300013844 *Microbiome Permanent Draft Fecal viral communites from wild urban brown rats in Berlin, Germany Fecal viral communites from wild urban brown rats in Berlin, Germany - KS/11/0572 Freie University Berlin 3300013844 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 52.529611 13.401343 2126919 5018 0 0 2 1 SRX616506 0.0 Metagenome 3300023294 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #732 DOE Joint Genome Institute (JGI) 3300023294 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 135330843 261916 52 1 93 0 SRX4397184 Unrestricted 25.89 Metagenome 3300044548 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_CSTR_108 DOE Joint Genome Institute (JGI) 3300044548 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 148463682 225568 157 5 217 4 SRX12655904 Unrestricted 108.62 Metagenome 7000000273 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 159490532 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000273 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 5142744 8897 0 0 0 0 SRX024526, SRX024525 0.0 Metagenome 3300047468 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 soil DOE Joint Genome Institute (JGI) 3300047468 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.588348 -123.19403 6.6 303907709 558114 220 15 465 21 Unrestricted 19.95 Metagenome 3300001531 *Microbiome Permanent Draft Sheep rumen microbial communities from New Zealand from high and low methane emitting sheep Sheep rumen microbial communities from New Zealand - Rank43_high DOE Joint Genome Institute (JGI) 3300001531 Metagenome Analysis Velvet Released because these are assemblies from SRA data No Yes janine.kamke@agresearch.co.nz, janine.kamke@uni-wuerzburg.de Janine Kamke No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen -40.352 175.608 468148207 911348 688 67 1218 105 0.0 Metagenome 3300038631 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes in Niagara, Canada Freshwater lake microbial communities from the Great Lakes in Niagara, Canada - LB-1P-Aug9-2012 McMaster University 3300038631 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 42.8638 -79.3862 4802068 10481 16 0 22 0 0.0 Metagenome 3300024453 *Microbiome Permanent Draft Vaginal microbial communities from lab mice Vaginal microbial communities from healthy lab mice, Madrid, Spain - G2-S16 treatment B3, day 1 Polytechnic University of Valencia 3300024453 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Vagina Reproductive system Unclassified mice vagina 40.4191094 -3.6725753 784682 1201 0 0 0 0 0.0 Metagenome 3300006964 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 158944319 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300006964 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 5571034 15630 14 4 18 5 SRX023609, SRX023610 0.0 Metagenome 3300037299 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Franzmann Lake #427 DOE Joint Genome Institute (JGI) 3300037299 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4823 78.2462 402979483 796380 210 85 308 137 SRX9174270 Unrestricted 16.15 Metagenome 3300014521 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 511_B Beijing Genomics Institute (BGI) 3300014521 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 55599961 57647 24 0 42 0 ERX491162 0.0 Metagenome 3300033925 *Microbiome Permanent Draft Deception Metagenome Fumarole sediment microbial communities from Fumarole Bay, Deception Island, Antarctica - FBA1 The Brazilian National Council for Scientific and Technological Development (CNPq) 3300033925 Metagenome Analysis IDBA-ud v. 1.1.1 released per Amanda Bendia -- GOLD-1013 No Yes amandagbendia@gmail.com Amanda Bendia No Environmental Aquatic Volcanic Marine Unclassified fumarole sediment -62.96 -60.71 21537506 25115 2 0 9 0 0.0 Metagenome 3300033490 *Microbiome Permanent Draft Hot spring microbial communities from different geyser basins in Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Geyser Creek Basin, Yellowstone National Park, WY, United States - GCR.EP_S DOE Joint Genome Institute (JGI) 3300033490 Metagenome Analysis spades v. 3.13.0 Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Near-boiling (>90C) Thermal springs Sediment hot spring sediment 44.6904 -110.7291 206359644 399680 116 5 170 1 SRX7584300 Unrestricted 287.44 Metagenome 3300021491 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-5-6_MG DOE Joint Genome Institute (JGI) 3300021491 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.0114 -110.5956 131033271 278801 154 0 249 1 Unrestricted 17.87 Metagenome 3300019848 *Microbiome Permanent Draft Marine microbial communities from toxin-producing cyanobacterial mats in Guam and Florida Keys Cyanobacterial mat microbial communities from Big Pine Ledges, Florida Keys National Marine Sanctuary, Florida, USA - sample 1 University of Maryland 3300019848 Metagenome Analysis MEGAHIT v1.1.1 released by JGI data releasing policy No Yes juliemeyer@ufl.edu Julie Meyer No Environmental Aquatic Oceanic Marine Benthic microbial mat 24.563056 -81.400833 10595353 12435 8 5 9 4 0.0 Metagenome 3300042237 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D250_2 DOE Joint Genome Institute (JGI) 3300042237 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 172493560 241257 130 3 175 11 Unrestricted 74.61 Metagenome 3300001262 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY74 J. Craig Venter Institute (JCVI) 3300001262 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 1315585172 4851665 142 113 493 152 0.0 Metagenome 3300060643 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from National Grasslands LBJ, Texas, USA - CLBJ_001-M-20210506-comp-1 DOE Joint Genome Institute (JGI) 3300060643 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Grasslands Soil Unclassified Terrestrial soil 33.39799 -97.56834 1744773601 3142766 608 27 1214 49 Unrestricted 16.91 Metagenome 3300015324 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_20JUN2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015324 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 189808317 328110 7 111 17 169 SRX3923071 Unrestricted 7.59 Metagenome 3300015063 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Storglaciaren, Tarfala, Sweden (Sample st-3b, vegetated patch on medial moraine) University of Bristol 3300015063 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.900853 18.44175 6 48601571 107670 63 7 96 7 0.0 Metagenome 3300070698 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_003-M-20180717-COMP-DNA1 3300070698 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 15639142 48845 42 1 94 3 0.0 Metagenome 3300049821 *Microbiome Permanent Draft Freshwater microbial communities in Lagoa de Furnas pond, Apiai, Sao Paulo, Brazil Freshwater microbial communities from Lagoa de Furnas, Apiai, Sao Paulo, Brazil - FUR1 UNIVERSIDADE DE SAO PAULO 3300049821 Metagenome Analysis metaFlye v. 2.9 released by Samir Atum No Yes samir.atum@usp.br Samir Atum No Environmental Aquatic Pond Freshwater Unclassified freshwater -24.535 -48.662 134224433 231960 52 15 60 23 0.0 Metagenome 3300012322 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100457 University of Pennsylvania 3300012322 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 13842735 35749 25 0 31 2 SRX756541 0.0 Metagenome 3300014279 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 207_D1_2014-6-2 San Diego State University 3300014279 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 6283284 18558 15 6 28 8 0.0 Metagenome 3300013842 *Microbiome Permanent Draft Ice-worm associated microbial communities from glacial ice of Collier Glacier, North Sister, OR, USA Ice-worm associated microbial communities from glacial ice of Collier Glacier, North Sister, OR, USA - sample 2 University of Cincinnati 3300013842 Metagenome Analysis Megahit v 1.1.1 released by JGI data releasing policy Yes Yes trinityh@umn.edu Trinity Hamilton No Host-associated Annelida Unclassified Whole body Unclassified Glacial ice worm 44.170555 -121.788323 372215424 305495 24 16 32 12 0.0 Metagenome 3300069513 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_016-M-20140327-COMP-DNA1 re-annotation Argonne National Laboratory 3300069513 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 17026372 53518 48 7 89 21 ERX2133956 0.0 Metagenome 3300008728 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 763840445 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008728 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 195331089 257431 195 0 328 0 0.0 Metagenome 3300039807 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_006-O-20170620-COMP-DNA1 Battelle Memorial Institute 3300039807 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 31894628 75055 35 10 49 11 0.0 Metagenome 3300023292 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1333 DOE Joint Genome Institute (JGI) 3300023292 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 85111111 183710 79 0 123 0 SRX4397422 Unrestricted 39.51 Metagenome 3300032931 *Microbiome Permanent Draft Lake microbial communities from Canada Sediment microbial communities from the Mixedwood Plains Ecozone, Canada - bottom sediment 08-148 Genome Quebec 3300032931 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Sediment 44.49841 -76.408316 637015268 1486443 444 7 801 21 0.0 Metagenome 7000000492 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 861967750 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000492 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 139600878 218004 0 0 0 0 0.0 Metagenome 3300006042 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 DOE Joint Genome Institute (JGI) 3300006042 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Host-associated Plants Endosphere Roots Unclassified Populus endosphere 35.8444 -83.9599 2018523278 6822836 1101 72 2102 145 SRX2748475 Unrestricted 0.0 Metagenome 3300027197 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.743 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027197 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 179945848 406694 195 20 324 58 SRX2753575 Unrestricted 0.0 Metagenome 3300026288 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_1/23/2012_ DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026288 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 211071011 296197 129 9 168 16 SRX2714414 Unrestricted 0.0 Metagenome 3300004270 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG16_big_fil_post_rev_8/21/14_0.65 DOE Joint Genome Institute (JGI) 3300004270 Metagenome Analysis MEGAHIT v. 0.2.0 revert back to private per Christa Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 1320248 5430 4 3 5 0 SRX3348162 Unrestricted 0.0 Metagenome 3300013259 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100772 University of Pennsylvania 3300013259 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14272533 28312 13 5 26 11 SRX756080 0.0 Metagenome 3300003461 *Microbiome Permanent Draft Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil, in a copper mine Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P4 sample University of Campinas 3300003461 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes danba.castro@gmail.com Daniel Castro No Environmental Terrestrial Unclassified Soil Mine drainage Ore pile and mine drainage contaminated soil -6.426389 -50.051389 178621212 281589 92 4 165 8 0.0 Metagenome 3300038483 *Microbiome Permanent Draft Bacterial communities from sewage treatment works near Birtley, UK Bioelectrochemical system biofilm bacterial communities from sewage treatment works near Birtley, UK - 18 4M Northumbria University 3300038483 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes martin.spurr@newcastle.ac.uk Martin Spurr No Engineered Bioreactor Unclassified Anaerobic Unclassified wastewater 54.903212 -1.595078 37209753 78077 129 0 213 0 0.0 Metagenome 3300006962 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Stylissa sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina ""control"", st9ic" University of New South Wales 3300006962 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au, e.botte@aims.gov.au; n.webster@aims.gov.au Nicole Webster, Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Stylissa sp. (marine sponge) -9.828217 150.820517 13417040 14933 10 1 11 1 0.0 Metagenome 3300010395 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - Or.Ma.e DOE Joint Genome Institute (JGI) 3300010395 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes avisel@lbl.gov, laila.partida@cinvestav.mx Visel, Axel, Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.0936 -100.2988 1637297793 2664486 726 1452 1220 2861 SRX2483315, SRX2483314 Unrestricted 0.0 Metagenome 3300043111 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B6.1_Sample6.Rodeo1.Well1132 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043111 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 158012307 278044 166 0 269 0 SRX8355471 Unrestricted 77.77 Metagenome 3300023057 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6 DOE Joint Genome Institute (JGI) 3300023057 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 185319142 513049 421 17 871 38 SRX4801314 Unrestricted 7.43 Metagenome 3300049428 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River, Colorado, USA - Cellobiose_Long DOE Joint Genome Institute (JGI) 3300049428 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 116989705 287457 274 15 401 30 Restricted 11.57 Metagenome 3300055524 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.2W.14 SIP fraction DOE Joint Genome Institute (JGI) 3300055524 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 164968241 309112 161 17 255 21 Unrestricted 14.68 Metagenome 3300011248 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.2 Toyama Prefectural University 3300011248 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Unclassified marine 37.04027 137.37583 8.2 81846161 166836 35 1 57 1 0.0 Metagenome 3300059778 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059778 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.234 -123.9135 52588004 125252 154 54 282 75 SRX2753607 Unrestricted 0.0 Metagenome 2006543007 *Microbiome Finished Groundwater microbial communities from Oak Ridge Integrated Field Research Center, Tennessee, that are pristine and uranium contaminated Uranium contaminated groundwater from Oak Ridge Integrated Field Research Center, Tennessee DOE Joint Genome Institute (JGI) 2006543007 Metagenome Analysis Paracel Genome Assembler No Yes jzhou@ou.edu Zhou, Jizhong Yes 20182523 Environmental Aquatic Groundwater Freshwater Contaminated Groundwater 36.11569 -84.248657 3.7 9554544 12420 3 0 3 0 0.0 Metagenome 3300041697 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_475 MetaG AgResearch, New Zealand, Mosgeil 3300041697 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1640647184 3573871 357 45 1184 54 0.0 Metagenome 3300036907 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 S2 30-34 DOE Joint Genome Institute (JGI) 3300036907 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0475 387532242 632367 127 3 203 4 SRX8138788 Unrestricted 15.54 Metagenome 3300020562 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 05MAY2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020562 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 193789167 396450 157 13 239 20 SRX1989749 Unrestricted 0.0 Metagenome 3300025283 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025283 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; sean.crowe@ubc.ca; jkjarett@lbl.gov Ramunas Stepanauskas; Sean Crowe; Jessica Jarett No Environmental Aquatic Lake Freshwater Unclassified freshwater -13.5167 34.7703 333232669 721028 308 44 512 75 SRX3571179 Unrestricted 27.45 Metagenome 3300003868 *Microbiome Permanent Draft Fountain water microbial communities from Alpena County Library, Michigan, USA Alpena Fountain idba assembled University of Michigan 3300003868 Metagenome Analysis IDBA_UD v 1.1.1 released per PI's request No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Groundwater Freshwater Unclassified Fountain water 45.062461 -83.431242 45207620 57658 30 1 50 1 0.0 Metagenome 3300031927 *Microbiome Permanent Draft Microbial communities from the deep biosphere Freshwater microbial communities in the subglacial waters of the Vatnajokull ice cap, Iceland - A3 re-assembly Marine Biological Laboratory 3300031927 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet Yes 22975882 Environmental Aquatic Subglacial lake Freshwater Unclassified Freshwater 64.48702 -17.50583 58751601 117045 54 2 94 7 0.0 Metagenome 3300043422 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mores Creek, Idaho City, Idaho, USA - morescreek_2019_sw_WHONDRS-S19S_0085 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043422 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 43.6481 -115.9889 315828580 542130 346 149 563 238 Unrestricted 27.19 Metagenome 3300027081 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C33A6_35 (SPAdes) DOE Joint Genome Institute (JGI) 3300027081 Metagenome Analysis spades v. 3.11.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 134307974 328688 176 49 273 91 SRX1991083 Unrestricted 0.0 Metagenome 3300005527 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom. Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG DOE Joint Genome Institute (JGI) 3300005527 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov, rmmckay@bgsu.edu Susannah Tringe, Robert M. McKay No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.69957 -83.2941 1727104846 4459050 920 323 1349 593 SRX2832451 Unrestricted 0.0 Metagenome 3300039681 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_009-O-20160818-COMP-DNA1 Battelle Memorial Institute 3300039681 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 53858584 113869 29 17 50 15 0.0 Metagenome 3300032163 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0 DOE Joint Genome Institute (JGI) 3300032163 Metagenome Analysis spades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5099 -110.3581 4373222770 9143118 3023 27 5163 64 SRX6380694 Unrestricted 9.57 Metagenome 3300008329 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 159247771 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008329 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 4515827 10256 7 0 10 0 SRX024619, SRX024620 0.0 Metagenome 3300014312 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLA_D1 DOE Joint Genome Institute (JGI) 3300014312 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.224518 -122.019257 324997106 782227 426 4 785 6 SRX7187022 Unrestricted 0.0 Metagenome 3300003815 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jun07 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003815 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 35152781 87031 54 11 82 22 SRX2565421 Unrestricted 0.0 Metagenome 3300043244 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from California, United States - Warm Spring A (WSA_S1) (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043244 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified Desert spring 37.2656 -118.2713 7.62 444813845 573345 197 14 270 20 SRX9470708 Unrestricted 101.33 Metagenome 3300044788 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_259 DOE Joint Genome Institute (JGI) 3300044788 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 870497545 1894031 424 13 818 20 Unrestricted 8.24 Metagenome 3300011443 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2 DOE Joint Genome Institute (JGI) 3300011443 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9779 -107.0027 536977764 1231531 529 49 1008 81 SRX3539429 Unrestricted 0.0 Metagenome 3300045808 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_2_C DOE Joint Genome Institute (JGI) 3300045808 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 155732378 181704 92 4 104 2 Unrestricted 129.38 Metagenome 3300025991 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Tolay_CordB_D2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025991 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.15012 -122.438774 137407292 293051 172 0 269 1 SRX7144823 Unrestricted 0.0 Metagenome 3300066304 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_002-O-20170620-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066304 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 17290809 52679 78 17 146 21 0.0 Metagenome 3300049903 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent fluid viral communities from North Pacific Ocean - A5006 v DOE Joint Genome Institute (JGI) 3300049903 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 9.838 -104.2914 67801173 128224 76 5 97 4 Restricted 330.52 Metagenome 3300025488 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_150m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025488 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 269328873 503761 192 4 279 5 Unrestricted 0.0 Metagenome 3300025607 *Microbiome Permanent Draft Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico and Hudson Canyon, USA Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM9B Gulf of Mexico (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025607 Metagenome Analysis spades v. 3.11.1 Yes Yes mcredmond@uncc.edu Molly C. Redmond No Environmental Aquatic Cold seeps Marine Unclassified Methane seep mesocosm 27.37 -90.57 408950416 672833 362 1 360 0 Unrestricted 0.0 Metagenome 3300028227 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Site 228 with 0.8UM filter - spades J. Craig Venter Institute 3300028227 Metagenome Analysis Spades v. 3.11.1 Released per Simon Roux. Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater -68.4 78.18278 7.29 34270862 71629 29 0 40 1 0.0 Metagenome 3300002022 *Microbiome Permanent Draft Permafrost and active layer soil microbial communities from McGill Arctic Research Station (MARS), Canada, for enrichment studies Permafrost and active layer soil microbial communities from McGill Arctic Research Station (MARS), Canada, for enrichment studies - Sample_2R 3300002022 Metagenome Analysis released by JGI data releasing policy No Yes Tullis Onstott; Tatiana Vishnivetskaya; Karuna Chourey; Susan M. Pfiffner;Alice Layton No Environmental Terrestrial Unclassified Soil Permafrost Permafrost and active layer soil 79.26 -90.46 51728037 130107 59 0 118 1 0.0 Metagenome 3300003426 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_750_plan DOE Joint Genome Institute (JGI) 3300003426 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 231002086 341597 154 40 277 57 SRX2770514 Unrestricted 0.0 Metagenome 2058419007 *Microbiome Permanent Draft Feline fecal microbial communities from Illinois, USA cat metagenome 1 Research and Testing Laboratory 2058419007 Metagenome Analysis seqman NGEN transcriptome released per JGI data release policy No Yes sdowd@pathogenresearch.org Scot E. Dowd No Host-associated Mammals Large intestine Digestive system Fecal Feline fecal 40.11 -88.4 82147642 243922 170 0 303 0 0.0 Metagenome 3300028907 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_RA_Leu DOE Joint Genome Institute (JGI) 3300028907 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 222962193 368225 165 0 251 0 SRX5355880 Unrestricted 32.16 Metagenome 3300017906 *Microbiome Permanent Draft Marine microbial communities from Caribbean coral reef seawater Lab simulated communities from sequences of contaminating DNA, Cape Cod, Massachusetts, United States - control University of Illinois, Urbana-Champaign 3300017906 Metagenome Analysis MEGAHIT v1.1.1-2-g02102e1 released by JGI data releasing policy No Yes lweber@whoi.edu Laura Weber No Engineered Modeled Unclassified Simulated communities (sequence read mixture) Unclassified Lab 41.5242 -70.6712 670442 987 5 4 5 5 0.0 Metagenome 3300027239 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1555B-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027239 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2024 -123.9409 118227030 253908 198 29 341 48 SRX2753734 Unrestricted 23.89 Metagenome 7000000230 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764285508 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000230 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 131575077 248646 0 0 0 0 0.0 Metagenome 3300049223 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_190116.NP1 DOE Joint Genome Institute (JGI) 3300049223 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 791244195 1794227 554 57 979 99 Unrestricted 10.62 Metagenome 3300031683 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #69 DOE Joint Genome Institute (JGI) 3300031683 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5735 77.9231 612266277 1374095 414 164 570 318 SRX5650069 Unrestricted 19.0 Metagenome 3300037365 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 30-34 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037365 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 753982763 1604566 443 1 781 6 SRX4415327, SRX8128002 Unrestricted 0.0 Metagenome 3300027725 *Microbiome Permanent Draft Agricultural soil microbial communities from Utah and Georgia to study Nitrogen management Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027725 Metagenome Analysis spades v. 3.11.1 Yes Yes jeanette.norton@usu.edu Jeanette Norton No Environmental Terrestrial Agricultural land Soil Unclassified Agricultural soil 33.8834 -83.4195 638103964 1355442 559 49 979 82 SRX2924236 Unrestricted 0.0 Metagenome 3300014918 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00429 Weill Cornell Medical College 3300014918 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.74 -73.89 40114522 57749 26 0 26 0 SRX822398 0.0 Metagenome 3300070970 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_043-M-20200728-COMP-DNA1 3300070970 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 24786805 76005 77 3 116 7 0.0 Metagenome 3300014045 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00632 Weill Cornell Medical College 3300014045 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.83 -73.93 15810133 26992 12 0 26 0 SRX822599 0.0 Metagenome 3300013677 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100778 University of Pennsylvania 3300013677 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14009201 22641 7 1 12 4 SRX756075 0.0 Metagenome 3300037559 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Seawater microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR13_34 DOE Joint Genome Institute (JGI) 3300037559 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Unclassified seawater 47.7583 -127.7622 178030874 483481 200 36 351 67 SRX9096429 Unrestricted 127.44 Metagenome 3300009797 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S2_10_20 DOE Joint Genome Institute (JGI) 3300009797 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228379 -119.2717467 86424152 200360 192 14 373 28 SRX2523278 Unrestricted 0.0 Metagenome 3300069237 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Lower Teakettle, Sierra National Forest, California, USA - TEAK_043-M-20210719-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069237 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 36.999698 -119.011037 2317594815 5558632 1435 103 2655 161 0.0 Metagenome 3300033561 *Microbiome Permanent Draft Lab enriched peat soil microbial communities from two peatlands near Ithaca, NY, United States Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB28FN SIP fraction DOE Joint Genome Institute (JGI) 3300033561 Metagenome Analysis spades v. 3.13.0 Yes Yes rer26@cornell.edu Ruth Richardson No Environmental Terrestrial Wetlands Soil Peat peat soil 42.5488 -76.2662 361078402 629777 172 1 262 6 SRX7543025 Unrestricted 10.83 Metagenome 3300014657 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin05_10_metaG DOE Joint Genome Institute (JGI) 3300014657 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1592493073 3344533 825 43 1353 121 SRX3292369 Unrestricted 5.25 Metagenome 3300037318 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site2_nosalt_MIX_4 DOE Joint Genome Institute (JGI) 3300037318 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Salt marsh microbial mat 20.7452 58.6625 1249043481 1814842 396 1 613 3 SRX9169791 Unrestricted 20.31 Metagenome 3300020688 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 12AUG2008 hypolimnion DOE Joint Genome Institute (JGI) 3300020688 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 57125852 122794 64 12 89 15 Unrestricted 0.0 Metagenome 3300020407 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001105 (ERX556033-ERR599115) CEA Genoscope 3300020407 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 35.3379 -127.7376 1054591234 2646522 698 100 1175 180 0.0 Metagenome 3300042199 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lake Yojoa, Honduras - Yojoa_01_2020_R_epi (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300042199 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Lake Freshwater Unclassified Freshwater 14.9144 -88.0205 1474374844 2694866 614 120 966 194 Unrestricted 11.95 Metagenome 3300014965 *Microbiome Permanent Draft Terrestrial microbial communites from a soil warming plot in Okalahoma, USA Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T2 Georgia Institute of Technology 3300014965 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial 34.975667 -97.519 398445560 1350182 104 6 251 13 SRX352035 0.0 Metagenome 3300042753 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_23-Sept-14 NMDC pilot DOE Joint Genome Institute (JGI) 3300042753 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 97610834 235911 280 56 485 77 SRX2838894 0.0 Metagenome 3300012928 *Microbiome Permanent Draft Marine microbial communities from the Costa Rica Dome and surrounding waters Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG DOE Joint Genome Institute (JGI) 3300012928 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes msaito@whoi.edu Mak Saito No Environmental Aquatic Oceanic Marine Photic zone surface seawater 2.0416 -97.0511 2630446705 5914726 1640 358 2859 553 SRX3375200 Unrestricted 0.0 Metagenome 3300048497 *Microbiome Permanent Draft Marine and freshwater sediment microbial communities from various locations Marine sediment microbial communities from Mediterranean Sea - Mediterranean_Core_1_20-24_cm DOE Joint Genome Institute (JGI) 3300048497 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes smtechtm@mtu.edu Stephen Techtmann No Environmental Aquatic Sediment Marine Unclassified Marine sediment 31.971 30.142 489148484 1459095 614 1 1124 0 Unrestricted 7.49 Metagenome 3300070674 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Virginia, USA - BLAN_038-M-20200714-COMP-DNA1 3300070674 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Agricultural land Soil 2100446 7334 41 5 71 5 0.0 Metagenome 3300000703 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 14 DOE Joint Genome Institute (JGI) 3300000703 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 9980880 30375 50 0 82 0 SRX4338633 Unrestricted 0.0 Metagenome 3300041823 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - A_31_wk_5 DOE Joint Genome Institute (JGI) 3300041823 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9659 -106.983 145764351 383973 194 3 372 6 SRX14809619 Unrestricted 9.13 Metagenome 3300042061 *Microbiome Permanent Draft Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - Dsc3_c18.5 Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042061 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1247 -89.1411 744180278 861242 3 8 4 12 SRX5234783 0.0 Metagenome 3300000095 *Microbiome Draft Soil microbial communities from four geographically distinct crusts in the Colorado Plateau and Sonoran desert Soil microbial communities from Colorado Plateau, Green Butte sample - Light Crust, Colorado Plateau, Green Butte 2 DOE Joint Genome Institute (JGI) 3300000095 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes elbrodie@lbl.gov, ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Sand Soil Desert Soil 39.0042816 -77.1012173 187470877 491453 459 0 935 0 Unrestricted 0.0 Metagenome 3300029493 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 097_5_2_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029493 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 257104755 332573 259 0 363 0 0.0 Metagenome 3300045401 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-542 Genome Quebec 3300045401 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 55.131569 -124.482396 1175886949 2593150 521 120 908 262 0.0 Metagenome 3300012208 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG DOE Joint Genome Institute (JGI) 3300012208 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.5673 -123.4758 2731071830 5648057 1775 55 3143 120 SRX3372748 Unrestricted 0.0 Metagenome 3300046046 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Para, Brazil - F5-4A DOE Joint Genome Institute (JGI) 3300046046 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -3.2967 -54.9638 710549759 1770768 351 21 740 43 Restricted 0.0 Metagenome 3300042941 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-336 Genome Quebec 3300042941 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.715267 -119.923178 1440668440 3204233 542 150 831 254 0.0 Metagenome 3300064811 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 678 in Boyle, Alberta, Canada - S00JY_0691 Microbiome Insights 3300064811 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 54.40412255 -112.5854583 50888233 72713 23 1 46 1 0.0 Metagenome 3300025881 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025881 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 27054497, 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 1046037980 2010855 550 120 942 171 SRX2999750 Unrestricted 0.0 Metagenome 3300021382 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2016_4, 0.2 Toyama Prefectural University 3300021382 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Sediment marine 37.01526 137.61294 52963654 127396 33 0 48 1 0.0 Metagenome 3300040601 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Temperate deciduous broadleaf forest soil microbial communities from Baltimore, USA - 013_R1_022417 University of Maryland 3300040601 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate deciduous broadleaf forest soil 39.34266667 -76.6237 1723754 5962 20 0 27 1 0.0 Metagenome 3300044523 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Leaf microbial communities from farm grass in Deerfield, Massachusetts, United States - Ryegrass_Phyllosphere_Drought5 DOE Joint Genome Institute (JGI) 3300044523 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 42.4788 -72.5788 962285764 1853707 373 253 530 331 Unrestricted 13.53 Metagenome 3300040997 *Microbiome Permanent Draft Bacterial communities from sewage treatment works near Birtley, UK Bioelectrochemical system biofilm bacterial communities from sewage treatment works near Birtley, UK - 26 4M Northumbria University 3300040997 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes martin.spurr@newcastle.ac.uk Martin Spurr No Engineered Bioreactor Unclassified Anaerobic Unclassified wastewater 54.903212 -1.595078 40392494 81766 109 0 201 0 0.0 Metagenome 3300008020 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-22 DOE Joint Genome Institute (JGI) 3300008020 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 857634691 1492644 867 13 1382 38 SRX3198640 Unrestricted 0.0 Metagenome 3300035427 *Microbiome Permanent Draft Mouse fecal microbial communities from various locations Fecal microbial communities from mouse strain C57/BL6 in Denmark - 2B-dyr19-06 Beijing Genomics Institute (BGI) 3300035427 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 55.676097 12.568337 55287261 75304 35 0 72 0 0.0 Metagenome 3300028036 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2 DOE Joint Genome Institute (JGI) 3300028036 Metagenome Analysis spades v. 3.11.1 Yes Yes baldrian@biomed.cas.cz; kostelecke.uzeniny@seznam.cz Petr Baldrian; Tomas Vetrovsky No Host-associated Plants Rhizosphere Roots Soil rhizosphere 59.9982 10.7894 61453977 155860 103 30 183 50 SRX5272046 Unrestricted 8.49 Metagenome 3300025149 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP2 (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025149 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; duane.moser@dri.edu Ramunas Stepanauskas; Duane Moser No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Thermal springs 36.96 -116.72 619350867 1726642 923 36 1748 68 SRX2948714 Unrestricted 0.0 Metagenome 3300054959 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_28-s55 day 28 DOE Joint Genome Institute (JGI) 3300054959 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 144768714 194571 49 53 74 68 Unrestricted 94.39 Metagenome 7000000381 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 1, subject 159450072 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000381 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 4703877 8954 0 0 0 0 SRX024634, SRX024633, SRX024672, SRX024673 0.0 Metagenome 3300046803 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Atchafalaya River, Louisiana, USA - NASQAN2011_240 DOE Joint Genome Institute (JGI) 3300046803 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 29.6928 -91.2119 10612256 31491 50 16 94 33 Unrestricted 0.0 Metagenome 3300049675 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control DOE Joint Genome Institute (JGI) 3300049675 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 249729277 603563 418 36 894 59 Unrestricted 16.62 Metagenome 3300004012 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqC_D2 DOE Joint Genome Institute (JGI) 3300004012 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.197227 -122.010124 895924677 2836321 1004 14 2112 19 SRX7142758 Unrestricted 0.0 Metagenome 3300023714 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Xylan, Gen0, Rep 1 Spades (v2) (version 2) DOE Joint Genome Institute (JGI) 3300023714 Metagenome Analysis MEGAHIT v. 1.0.6 No Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4148 -119.8405 393932418 1058181 422 2 766 9 SRX3963325 Unrestricted 0.0 Metagenome 3300032247 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime Ecozone, Canada - Lake 07-040 Genome Quebec 3300032247 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.316199 -66.760412 592273014 1201668 334 91 590 201 0.0 Metagenome 3300018029 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MG DOE Joint Genome Institute (JGI) 3300018029 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 4.2396 -73.2024 771828314 1869319 882 11 1751 20 SRX3936928 Unrestricted 4.18 Metagenome 3300026483 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 23D DOE Joint Genome Institute (JGI) 3300026483 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 253709948 499950 196 49 250 75 SRX4496740 Unrestricted 18.44 Metagenome 3300006315 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0770m University of Hawaii 3300006315 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Aphotic zone Marine 22.75 -158.0 208123470 551871 523 24 743 43 0.0 Metagenome 3300024227 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 DOE Joint Genome Institute (JGI) 3300024227 Metagenome Analysis spades v. 3.11.1 Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Host-associated Plants Rhizosphere Roots Unclassified rhizosphere 49.0427 13.6161 249926901 576241 144 21 248 29 SRX4456756 Unrestricted 8.49 Metagenome 3300002010 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot12-3 3300002010 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 6606718 37970 111 5 229 6 0.0 Metagenome 3300038306 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI152_2019_jun_100m DOE Joint Genome Institute (JGI) 3300038306 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 287973070 629809 248 53 389 120 SRX9402726 Unrestricted 9.33 Metagenome 3300005298 *Microbiome Permanent Draft Hot Spring microbial communities from Great Boiling Spring, Nevada Hot spring sediment microbial communities from Great Boiling Spring, Nevada - Cellulolytic enrichment Sediment 77C v2 (version 2) DOE Joint Genome Institute (JGI) 3300005298 Metagenome Analysis SPADES v3.5.0 released based on JGI ITS Yes Yes nnivanova@lbl.gov, brian.hedlund@unlv.edu Natasha Ivanova, Brian Hedlund Yes 23555835 Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot Spring 40.71458 -119.369659 6.37 150187695 231170 125 1 182 2 Unrestricted 0.0 Metagenome 3300012019 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A7_5cm_12M University of Tennessee 3300012019 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 450340385 1180903 128 2 306 5 SRX710614 0.0 Metagenome 3300032737 *Microbiome Permanent Draft Meromitic Lake A Freshwater microbial communities from meromitic lake A, Ellesmere Island, Canada - Sample 40m Laval University 3300032737 Metagenome Analysis Megahit v. 1.0.5 released by JGI data releasing policy Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 82.99445 -75.443367 1009815496 2053189 461 3 937 0 0.0 Metagenome 3300024907 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 87_LOW11 (SPAdes) DOE Joint Genome Institute (JGI) 3300024907 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 39369870 54691 24 1 35 4 SRX2721164 Unrestricted 0.0 Metagenome 3300030059 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_085 - TARA_R100001369 CEA Genoscope 3300030059 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -62.0385 -49.529 214999213 358310 50 0 86 0 0.0 Metagenome 3300001883 *Microbiome Permanent Draft Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils (2) Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils - Sample12 3300001883 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Terrestrial Unclassified Soil Grasslands Grassland soil 23.850674 69.734802 0 0 0 0 0 0 0.0 Metagenome 3300048104 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_110209.NP9 DOE Joint Genome Institute (JGI) 3300048104 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 692257879 1532321 459 30 676 71 Unrestricted 15.83 Metagenome 3300041071 *Microbiome Permanent Draft Contaminated soil microbial communities from Humid Pampas, Chascomus Partido, Argentina Control soil microbial communities from Humid Pampas, Chascomus Partido, Argentina - L4_286 Illumina 3300041071 Metagenome Analysis Megahit v. 1.2.10 released by JGI data releasing policy No Yes valeria.imperato@uhasselt.be Valeria Imperato No Environmental Terrestrial Unclassified Soil Agricultural land Control soil -35.5787 -58.0138 8198483 18286 38 2 65 6 0.0 Metagenome 3300018045 *Microbiome Permanent Draft Marine microbial communities from Tor Caldara Marine pioneer microbial mat bacterial communities from Tor Caldara shallow water vent, Tyrrhenian Sea, Italy - TCM3 Molecular Research LP (MR DNA) 3300018045 Metagenome Analysis SPADES released by JGI data releasing policy No Yes sushmita.patwardhan@gmail.com Sushmita Patwardhan No Environmental Aquatic Hydrothermal vents Marine Microbial mats Marine microbial mat 41.48583333 12.58972222 86014938 133940 88 3 119 10 0.0 Metagenome 2006207004 *Microbiome Finished Sediment methylotrophic communities from Lake Washington, Seattle, Washington, USA Sediment methylotrophic communities from Lake Washington - Formate enrichment DOE Joint Genome Institute (JGI) 2006207004 Metagenome Analysis LUCY, PGA Assembler 10-14 day incubation with 10 mM 13C-labeled formate; enzyme / detergent lysis, phenol extraction and isopropanol precipitation; 13C-labeled DNA isolated by CsCl purification. No Yes milachis@u.washington.edu, lidstrom@uw.edu; milachis@u.washington.edu Lumila Chistoserdova, Mary Lidstrom; Ludmila Chistoserdova Yes 18711340 Environmental Aquatic Lentic Freshwater Sediment Sediment 47.676484 -122.228394 17570569 28834 5 0 2 0 Unrestricted 0.0 Metagenome 3300027348 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F03 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027348 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 45858838 59876 60 0 59 2 SRX3195090 Unrestricted 0.0 Metagenome 3300018918 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - early stage, 0 min after wetting v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018918 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 384875938 765667 337 10 601 20 0.0 Metagenome 3300070708 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_042-M-20190716-COMP-DNA1 3300070708 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 5367979 17530 32 2 45 2 0.0 Metagenome 3300039056 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - CEB2 Michigan State University 3300039056 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 36.75 175.833333 28351935 78459 1 0 6 0 0.0 Metagenome 3300028574 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_2 DOE Joint Genome Institute (JGI) 3300028574 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 673735319 1526534 295 42 502 71 SRX5281067 Unrestricted 0.0 Metagenome 3300025125 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025125 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 18.92 -108.7999 324936396 855330 16 2 11 0 SRX2557417 Unrestricted 0.0 Metagenome 3300027656 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300027656 Metagenome Analysis spades v. 3.11.1 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 423634733 936294 276 73 434 122 Unrestricted 0.0 Metagenome 3300060657 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Chase Lake Wetlands, North Dakota, USA - WOOD_024-M-20210714-comp-1 DOE Joint Genome Institute (JGI) 3300060657 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 47.151171 -99.262648 640397189 1171446 380 3 777 5 Unrestricted 18.96 Metagenome 3300048080 *Microbiome Permanent Draft Marine and freshwater sediment microbial communities from various locations Freshwater sediment microbial communities from Lake Michigan, United States - BI (Beaver Island) (D) DOE Joint Genome Institute (JGI) 3300048080 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes smtechtm@mtu.edu Stephen Techtmann No Environmental Aquatic Sediment Freshwater Unclassified Freshwater sediment 45.51 -85.3939 919628594 2209689 639 4 1076 3 Unrestricted 9.57 Metagenome 3300071004 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_005-M-20180530-COMP-DNA1 3300071004 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 26579299 78730 115 3 202 5 0.0 Metagenome 3300040142 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_001-M-20160720-COMP-DNA1 Battelle Memorial Institute 3300040142 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 10789190 31948 24 2 52 5 0.0 Metagenome 3300042276 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA MBR feed microbial communities from membrane bioreactor in Denver, Colorado, USA - FD_D206_2 DOE Joint Genome Institute (JGI) 3300042276 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Wastewater Mine water Industrial wastewater Produced water MBR feed 39.7823 -104.9101 673348527 996285 482 2 706 4 Unrestricted 16.77 Metagenome 3300043486 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 040-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043486 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9206 -106.9515 319763604 894630 497 36 899 55 Unrestricted 7.1 Metagenome 3300042082 *Microbiome Permanent Draft Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - F_c8 Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042082 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1237 -89.1404 823845944 813914 5 7 7 13 SRX5234776 0.0 Metagenome 3300050459 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - W8NW0 DOE Joint Genome Institute (JGI) 3300050459 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 144442599 268137 200 43 379 48 Unrestricted 18.05 Metagenome 3300045084 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-477 Genome Quebec 3300045084 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 54.242465 -125.061656 1026789790 2285460 505 102 766 210 0.0 Metagenome 3300044497 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_5 DOE Joint Genome Institute (JGI) 3300044497 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 561322496 1419248 553 31 959 47 Unrestricted 6.91 Metagenome 3300001993 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot26-3 3300001993 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 520999 2993 29 4 40 9 0.0 Metagenome 3300025862 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025862 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.299 -156.61 759801115 1490465 424 24 732 30 SRX2900831 Unrestricted 0.0 Metagenome 3300046727 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 soil DOE Joint Genome Institute (JGI) 3300046727 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121233 -123.270148 5.11 937449279 1473025 254 11 430 18 Unrestricted 13.1 Metagenome 3300031354 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - SW1603-20 DOE Joint Genome Institute (JGI) 3300031354 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.722 -70.891 447713698 1007824 429 2 647 1 SRX5359148 Unrestricted 8.28 Metagenome 3300031721 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #181 DOE Joint Genome Institute (JGI) 3300031721 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5596 77.8957 675825841 1473536 264 12 431 22 SRX5650089 Unrestricted 0.0 Metagenome 3300021361 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 DOE Joint Genome Institute (JGI) 3300021361 Metagenome Analysis spades v. 3.11.1-check Yes Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Host-associated Plants Rhizosphere Roots Unclassified rhizosphere -19.2822 -43.5936 976288217 2159522 540 54 870 99 SRX4020303 Unrestricted 11.32 Metagenome 3300022864 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #653 DOE Joint Genome Institute (JGI) 3300022864 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 203541480 382915 193 4 289 6 SRX4397136 Unrestricted 13.74 Metagenome 3300025570 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025570 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 282435334 570998 171 103 225 142 SRX2751899 Unrestricted 0.0 Metagenome 3300058959 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MG_130918 DOE Joint Genome Institute (JGI) 3300058959 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 582366139 961440 813 5 1167 9 Unrestricted 0.0 Metagenome 3300003391 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 PM DOE Joint Genome Institute (JGI) 3300003391 Metagenome Analysis revert back to private per Christa Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 10370287 30050 136 9 248 10 SRX2574369 Unrestricted 0.0 Metagenome 3300022217 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_24 DOE Joint Genome Institute (JGI) 3300022217 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Sediment Marine Unclassified sediment 37.7 -122.34 833350490 2020995 857 67 1504 102 SRX4055534 Unrestricted 7.5 Metagenome 3300030105 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_085 - TARA_R100001377 CEA Genoscope 3300030105 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -62.2231 -49.2139 175522658 330423 32 2 46 4 0.0 Metagenome 3300004020 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2 DOE Joint Genome Institute (JGI) 3300004020 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.04565 -121.866287 566429535 1729667 659 7 1493 8 SRX7142155 Unrestricted 0.0 Metagenome 3300020194 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041403US metaG (spades assembly) DOE Joint Genome Institute (JGI) 3300020194 Metagenome Analysis spades v. 3.10.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1026001660 1921447 437 53 751 72 SRX3920176 Unrestricted 31.82 Metagenome 3300003509 *Microbiome Permanent Draft Marine hydrothermal diffuse flow vent microbial communities from the Mid-Cayman Rise, Caribbean Sea Marine hydrothermal diffuse flow vent microbial communities from the Mid-Cayman Rise, Caribbean Sea - Sample FS848 Marine Biological Laboratory 3300003509 Metagenome Analysis released per JGI data release policy No Yes Huber, J.A., and Julie Reveillaud No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Marine hydrothermal diffuse flow vent 18.376929 -81.797906 6.65 57973490 64441 6 0 11 1 0.0 Metagenome 3300023043 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-289 DOE Joint Genome Institute (JGI) 3300023043 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Unclassified Plant litter Unclassified leaf litter 40.2198 -122.9842 109859957 209753 24 25 30 39 SRX4392089 Unrestricted 47.09 Metagenome 3300045100 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_7_B DOE Joint Genome Institute (JGI) 3300045100 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 156066415 208071 93 1 109 1 Unrestricted 78.1 Metagenome 3300041707 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_495 MetaG AgResearch, New Zealand, Mosgeil 3300041707 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 2532458112 5389006 379 47 1406 79 0.0 Metagenome 3300001039 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN412 DOE Joint Genome Institute (JGI) 3300001039 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Soil 44.20517707 -122.1284473 295561 901 35 0 44 1 SRX3311836 Unrestricted 0.0 Metagenome 3300039171 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Trident Lake, Antarctica - #3 Australian Centre for Ecogenomics 3300039171 Metagenome Analysis Spades v. 3.13.0 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5392 78.228783 180170927 364135 136 16 234 23 0.0 Metagenome 3300070591 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_045-M-20200805-COMP-DNA1 Battelle Memorial Institute 3300070591 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.127465 -99.246302 7.58-8.35 12800433 41312 55 3 101 6 0.0 Metagenome 3300014029 *Microbiome Permanent Draft Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20110722 University of Hong Kong 3300014029 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Drinking water Freshwater Unclassified Aquatic 119639109 333909 61 8 128 13 SRX246995 0.0 Metagenome 3300070309 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_007-M-20190930-COMP-DNA1 3300070309 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 9862148 30990 39 4 95 3 0.0 Metagenome 3300013500 *Microbiome Permanent Draft Terrestrial microbial communites from a soil warming plot in Okalahoma, USA Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T4.rep2 Georgia Institute of Technology 3300013500 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial 34.975667 -97.519 174521632 595088 52 4 149 11 SRX352038 0.0 Metagenome 3300008012 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA DOE Joint Genome Institute (JGI) 3300008012 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 1000985669 2072638 488 14 849 24 SRX2751901 Unrestricted 0.0 Metagenome 3300029527 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P042V6 Beijing Genomics Institute (BGI) 3300029527 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 96782128 110667 71 0 110 0 0.0 Metagenome 3300059456 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.4C.12 SIP fraction DOE Joint Genome Institute (JGI) 3300059456 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 138542892 238924 194 45 283 69 Unrestricted 0.0 Metagenome 3300035119 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 DOE Joint Genome Institute (JGI) 3300035119 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1125 -122.987 1194593433 2784370 739 61 1211 88 SRX8289759 Unrestricted 6.92 Metagenome 7000000740 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 763840445 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000740 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 185734961 280850 0 0 0 0 0.0 Metagenome 3300027749 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027749 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 46.8319 -72.5 747302502 1444833 315 77 448 140 SRX2955013 Unrestricted 0.0 Metagenome 7000000362 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 159915365 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000362 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 74720 153 0 0 0 0 SRX023037, SRX023036 0.0 Metagenome 3300048016 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_71 DOE Joint Genome Institute (JGI) 3300048016 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 446819497 1039521 1570 18 2941 22 Restricted 0.0 Metagenome 3300061665 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0388 Microbiome Insights 3300061665 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 299255087 416353 94 2 140 4 0.0 Metagenome 3300029363 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 073_4_30_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029363 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 170024223 221909 168 1 207 0 0.0 Metagenome 3300029024 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 45_M Beijing Genomics Institute (BGI) 3300029024 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 115495139 163799 109 1 180 0 ERX491146 0.0 Metagenome 3300030350 *Microbiome Permanent Draft Nasopharyngeal microbial communities from infants in Muntinlupa City, Philippines and Johannesburg, South Africa Nasopharyngeal microbial communities from infants in Muntinlupa City, Philippines - RITM022I4 J. Craig Venter Institute 3300030350 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Respiratory system Nasopharynx Nasopharyngeal 14.4098512 121.034836 6211546 7605 8 0 7 0 SRX1602846 0.0 Metagenome 3300012310 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100758 University of Pennsylvania 3300012310 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12558603 25249 21 5 37 11 SRX756092 0.0 Metagenome 3300040508 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Soaproot Saddle, Pacific Southwest, CA, USA - SOAP_031-M-20180531-COMP-DNA1 Battelle Memorial Institute 3300040508 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.03337 -119.26219 3141630 10466 45 5 64 7 0.0 Metagenome 3300002558 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm DOE Joint Genome Institute (JGI) 3300002558 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 27843720, 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.718176 -123.652732 434132621 952602 73 3 329 5 SRX1991122 Unrestricted 0.0 Metagenome 3300045569 *Microbiome Draft Lake microbial communities from Canada Lake sediment microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-640 Genome Quebec 3300045569 Metagenome Analysis MEGAHIT v1.0.6 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Lake Sediment 48.772668 -123.300605 71656953 97152 54 16 108 21 0.0 Metagenome 3300014643 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00324 Weill Cornell Medical College 3300014643 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.79 -73.96 22458844 34329 12 0 15 0 SRX822297 0.0 Metagenome 3300001281 *Microbiome Permanent Draft Microbial community impact on carbon sequestration in managed wetland Carbon farming Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk DOE Joint Genome Institute (JGI) 3300001281 Metagenome Analysis Metagenome Standard Draft Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Sediment Wetland 38.107 -121.6475 173204638 479751 471 3 887 9 SRX2553227, SRX2553225 0.0 Metagenome 3300043734 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - FDOC_A001 DOE Joint Genome Institute (JGI) 3300043734 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.1424 -62.882 630702264 1715579 369 11 791 19 Unrestricted 7.48 Metagenome 3300009991 *Microbiome Permanent Draft Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions Switchgrass associated microbial communities from Austin, Texas, USA - LS_165 metaG DOE Joint Genome Institute (JGI) 3300009991 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes esinger@lbl.gov; twoyke@lbl.gov Esther Singer; Tanja Woyke No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass leaf 30.387 -97.7301 56005418 117160 54 9 96 11 SRX4807287 Unrestricted 0.0 Metagenome 3300069276 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_005-O-20210806-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069276 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tundra Soil Unclassified Terrestrial soil 68.560148 -149.528532 2791483050 6003735 1108 292 2050 501 0.0 Metagenome 3300013169 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100307 University of Pennsylvania 3300013169 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 31935364 67769 26 0 41 0 SRX756594 0.0 Metagenome 3300002319 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP02-I5 3300002319 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300013636 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00921 Weill Cornell Medical College 3300013636 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.85 11677281 15307 4 0 5 0 SRX822884 0.0 Metagenome 3300009607 *Microbiome Permanent Draft Anaerobic biogas reactor microbial communites from Washington, USA Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_B C13 SIP DNA DOE Joint Genome Institute (JGI) 3300009607 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes dacb@uw.edu David Beck Yes 28895946 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic biogas reactor 47.6525 -122.3049 544795521 923698 539 3 837 0 SRX2339082 Unrestricted 0.0 Metagenome 3300009488 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG DOE Joint Genome Institute (JGI) 3300009488 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes eaeloefadrosh@lbl.gov, EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Oceanic Marine Sediment Deep subsurface 1.759 96.774 1943907176 4189232 927 21 1610 22 SRX2524389 Unrestricted 0.0 Metagenome 3300060279 *Microbiome Permanent Draft Sediment microbial communities from the PNNL SFA Hanford 300 Area, Columbia River, WA, USA Sediment microbial communities from POM Trap at the PNNL SFA Hanford 300 Area, Columbia River, WA, USA - POM Trap DOE Joint Genome Institute (JGI) 3300060279 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes eroden@geology.wisc.edu Eric Roden No Environmental Aquatic River Freshwater Sediment Sediment 46.467778 -119.464444 973176480 1630332 652 220 995 300 Unrestricted 17.32 Metagenome 3300056800 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - APS4_16C_T0 DOE Joint Genome Institute (JGI) 3300056800 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 2306370112 3036417 488 134 637 205 Unrestricted 21.75 Metagenome 3300014196 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_116 The George Washington University (GWU) 3300014196 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 79941407 130238 83 3 128 3 SRX656281 0.0 Metagenome 3300031173 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Sorghum-adapted microbial communities enriched on wild type (WT) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - WT_Day14_7 DOE Joint Genome Institute (JGI) 3300031173 Metagenome Analysis spades v. 3.12.0 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 169291822 225522 183 0 228 1 SRX5661308 Unrestricted 186.98 Metagenome 3300071116 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from KU Field Station, Kansas, USA - UKFS_002-M-20180815-COMP-DNA1 3300071116 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 11473660 38085 76 6 147 6 0.0 Metagenome 3300010034 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Lord Howe Island, Old Settlement Bay, Australia - Cyphastrea 1 metagenome DOE Joint Genome Institute (JGI) 3300010034 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes momedinamunoz@gmail.com Medina Medina No Host-associated Invertebrates Coral Cnidaria Unclassified Coral -31.55 159.0833 1331245576 1915202 69 579 215 1184 SRX2525666 Unrestricted 0.0 Metagenome 3300008345 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763961826 replicate 2 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008345 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 110604749 157153 69 0 109 0 0.0 Metagenome 3300011457 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00984 Weill Cornell Medical College 3300011457 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.6 -73.81 16447108 21833 14 0 31 1 SRX822946 0.0 Metagenome 3300047994 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Western Region, Iceland - Sphagnum teres C1_TE_ICE DOE Joint Genome Institute (JGI) 3300047994 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 2398874298 3127985 743 164 967 249 SRX14752737 Unrestricted 18.79 Metagenome 3300013187 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100230 University of Pennsylvania 3300013187 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 30061386 62184 19 0 37 0 SRX756671 0.0 Metagenome 3300047372 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_150304.NP1 DOE Joint Genome Institute (JGI) 3300047372 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 1061071711 2213480 611 110 1041 199 Unrestricted 12.27 Metagenome 3300006498 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159591683 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006498 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 151863366 214671 181 0 215 0 0.0 Metagenome 7000000048 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit number 1 of subject 675950834 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000048 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 71365669 137758 0 0 0 0 0.0 Metagenome 3300011738 *Microbiome Permanent Draft Mine pit pond microbial communities from Vermont, USA Mine pit pond microbial communities from Vermont, USA - 1M University of Vermont 3300011738 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 27896068 Environmental Aquatic Alkaline Non-marine Saline and Alkaline Mine pit pond Mine pit pond 43.727094 -72.425964 26682203 54046 19 1 35 5 SRX1063448 0.0 Metagenome 3300006981 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada T0 (2) T65 (live) enrichments of Methanogenic microbial communities using Athabascan oil sands Shell Corporation 3300006981 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 30655547 58250 28 0 44 0 0.0 Metagenome 3300003482 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_750_biof DOE Joint Genome Institute (JGI) 3300003482 Metagenome Analysis revert back to private per Christa Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 180565045 264891 131 4 242 12 SRX2770504, SRX2770505, SRX2770508, SRX2770506, SRX2770507 Unrestricted 0.0 Metagenome 3300020178 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041405US metaG (spades assembly) DOE Joint Genome Institute (JGI) 3300020178 Metagenome Analysis spades v. 3.10.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 772545488 1442488 324 35 485 58 SRX3920201 Unrestricted 36.98 Metagenome 3300001152 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O1 DOE Joint Genome Institute (JGI) 3300001152 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 11889675 34656 156 109 233 202 SRX3311927 Unrestricted 0.0 Metagenome 3300002086 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - site 2 B6 DOE Joint Genome Institute (JGI) 3300002086 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes rmkelly@ncsu.edu Robert Kelly No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6102 -110.4387 9946993 11318 8 0 9 0 SRX2554348, SRX2554349, SRX2554347, SRX2554354, SRX2554350 Unrestricted 0.0 Metagenome 3300045587 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Des Moines River, Iowa, USA - NASQAN2011_275 DOE Joint Genome Institute (JGI) 3300045587 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 40.7278 -91.9596 505037223 1144836 511 118 853 202 Unrestricted 0.0 Metagenome 3300025797 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_CordA_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025797 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 37.928627 -122.504829 247331618 467278 208 1 328 3 SRX7142815 Unrestricted 0.0 Metagenome 3300008270 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159369152 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008270 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 46980365 84003 45 0 65 0 0.0 Metagenome 3300000146 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 54 02/08/11 120m DOE Joint Genome Institute (JGI) 3300000146 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 85825843 169407 73 0 134 1 Unrestricted 0.0 Metagenome 3300002272 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns DOE Joint Genome Institute (JGI) 3300002272 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 23506375 59736 52 11 100 9 SRX1988899 Unrestricted 0.0 Metagenome 3300049073 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - D25_B_BS (version 2) DOE Joint Genome Institute (JGI) 3300049073 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 108591829 239338 352 12 780 19 Unrestricted 0.0 Metagenome 3300002718 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A5w-11 DOE Joint Genome Institute (JGI) 3300002718 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 469536 1584 26 5 57 5 SRX1991140 Unrestricted 0.0 Metagenome 3300053155 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere DOE Joint Genome Institute (JGI) 3300053155 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121012 -123.271438 497278109 853914 411 111 361 137 Unrestricted 13.35 Metagenome 3300026306 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_02_40cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026306 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 378518500 691975 327 24 628 28 SRX2726145 Unrestricted 0.0 Metagenome 3300009881 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA4 University of New South Wales 3300009881 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 31227670 48423 18 1 26 3 0.0 Metagenome 3300005274 *Microbiome Draft Switchgrass adapted compost microbial communities from mini bioreactor at UC Davis Thermophilic enriched microbial communities from mini bioreactor at UC Davis - Sample SG0.5JP960 DOE Joint Genome Institute (JGI) 3300005274 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes jmgladden@lbl.gov, JMGladden@lbl.gov; SWSinger@lbl.gov John Gladden, John Gladden; Steven W. Singer Yes 23894306 Engineered Solid waste Composting Grass Bioreactor Switchgrass adapted compost 38.546 -121.7533 70257324 133165 106 3 133 0 Unrestricted 0.0 Metagenome 3300020581 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M DOE Joint Genome Institute (JGI) 3300020581 Metagenome Analysis spades v. 3.10.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 2821801009 6002306 807 51 1472 78 SRX4026206 Unrestricted 14.07 Metagenome 3300040791 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Salins du Lion, Vitrolles, France - D96a Genopole Toulouse Midi-Pyrenees 3300040791 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.45 5.2264 342146229 658843 333 26 619 40 0.0 Metagenome 3300032253 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrite DOE Joint Genome Institute (JGI) 3300032253 Metagenome Analysis spades v. 3.13.0 Yes Yes jbeam@bigelow.org; demerson@bigelow.org Jake Beam; David Emerson No Environmental Aquatic Coastal Marine Sediment microbial mat 43.8603 -69.5781 384188825 674961 284 29 444 33 SRX5822398 Unrestricted 39.99 Metagenome 3300010213 *Microbiome Permanent Draft Freshwater microbial communities enriched with nitrile substrates Freshwater aquifer microbial community from Bangor, North Wales, UK, enriched with nitrile substrate, replicate 4 Fidelity Systems Inc 3300010213 Metagenome Analysis Phred/Phrap/Consed v. 23.0 released per JGI data release policy Yes Yes stepan.toshchakov@gmail.com Stepan Toshchakov No Environmental Aquatic Groundwater Deep subsurface Unclassified freshwater 53.23 -4.13 48531499 112097 19 0 29 0 0.0 Metagenome 3300037200 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 711 P-1-S DOE Joint Genome Institute (JGI) 3300037200 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0473 1060374400 2183605 389 55 682 73 SRX8145068 Unrestricted 8.54 Metagenome 3300011339 *Microbiome Finished Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam Chunlab, Inc 3300011339 Metagenome Analysis SPAdes 3.8.2 released by JGI data releasing policy No Yes chojc@inha.ac.kr; krmoon518@gmail.com Jang-Cheon Cho; Kira Moon No Environmental Aquatic River Freshwater Unclassified Freshwater 37.5254611 127.0168945 28961528 40651 0 0 0 0 0.0 Metagenome 3300027062 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C27A4_80 (SPAdes) DOE Joint Genome Institute (JGI) 3300027062 Metagenome Analysis spades v. 3.11.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 132599564 329202 197 54 341 67 SRX1990964 Unrestricted 0.0 Metagenome 3300054083 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_17_150 re-annotation DOE Joint Genome Institute (JGI) 3300054083 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 384335545 745468 231 7 410 5 SRX3006033 0.0 Metagenome 3300014320 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1 DOE Joint Genome Institute (JGI) 3300014320 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.198971 -122.026955 409248141 947739 366 4 683 4 SRX7187019 Unrestricted 0.0 Metagenome 3300013091 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_220m DOE Joint Genome Institute (JGI) 3300013091 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; sean.crowe@ubc.ca; jkjarett@lbl.gov Ramunas Stepanauskas; Sean Crowe; Jessica Jarett No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.0288 29.1756 627205569 1302356 616 4 1057 15 SRX3571191 Unrestricted 8.06 Metagenome 3300042747 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_10-June-14 NMDC pilot DOE Joint Genome Institute (JGI) 3300042747 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 79563543 184926 245 66 405 121 SRX2838983 0.0 Metagenome 3300055277 *Microbiome Permanent Draft Soil microbial communities from various environments and locations in the USA Soil microbial communities from grassland in Ellensburg, Washington, USA - FTA3_TOP DOE Joint Genome Institute (JGI) 3300055277 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nancy.hess@pnnl.gov Nancy Hess No Environmental Terrestrial Grasslands Soil Bulk soil Soil 46.9216 -120.6586 1493397655 2734843 603 18 1066 26 Unrestricted 19.9 Metagenome 3300048788 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 E2 10-14 DOE Joint Genome Institute (JGI) 3300048788 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.0467 303533280 480347 153 3 267 6 Restricted 13.3 Metagenome 3300001330 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A30-5cm)- 6 month illumina University of Tennessee 3300001330 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 45272243 200530 231 33 373 59 0.0 Metagenome 3300049185 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - C24_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049185 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 272166362 656423 391 9 669 17 Unrestricted 0.0 Metagenome 3300028598 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160420 (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300028598 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling No Environmental Aquatic Subtidal zone Marine Sediment sediment 54.1817 7.9018 1624939106 3778892 1004 78 1860 123 SRX9088749, SRX9088751, SRX9088750 Unrestricted 7.96 Metagenome 3300000693 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 3 DOE Joint Genome Institute (JGI) 3300000693 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 7282968 22933 37 0 68 0 SRX4338204 Unrestricted 0.0 Metagenome 3300027942 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_30-Apr-14 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027942 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 149303859 389742 296 129 444 202 SRX2838888 Unrestricted 0.0 Metagenome 3300031766 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515 DOE Joint Genome Institute (JGI) 3300031766 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.7468 -122.0193 1873045175 3973795 1068 285 1617 523 SRX6423766 Unrestricted 16.6 Metagenome 3300027404 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius ullae BAHAMAS.2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027404 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 392728413 557390 4 2 3 3 SRX3299598 Unrestricted 0.0 Metagenome 3300021326 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen10, Rep 3 DOE Joint Genome Institute (JGI) 3300021326 Metagenome Analysis spades v. 3.11.1-check Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4149 -119.841 248170111 301997 330 2 383 2 SRX4038262 Unrestricted 83.81 Metagenome 3300043410 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Huger Creek, Cordesville, South Carolina, USA - hugercreek_2019_sw_WHONDRS-S19S_0044 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043410 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 33.1307 -79.8101 548127933 886366 211 38 253 54 Unrestricted 21.5 Metagenome 3300039662 *Microbiome Permanent Draft Glacier soil microbial communities from Mackay Glacier, Antarctica Glacier soil microbial communities from Mackay Glacier, Antarctica - MS6-5 University of Pretoria 3300039662 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Terrestrial Glacier Soil Unclassified Glacier soil -77.026 161.672 65448581 127052 37 0 68 0 0.0 Metagenome 3300060312 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.20W.14 SIP fraction DOE Joint Genome Institute (JGI) 3300060312 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 661958945 1193779 201 109 325 211 Unrestricted 0.0 Metagenome 3300009149 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG DOE Joint Genome Institute (JGI) 3300009149 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes eaeloefadrosh@lbl.gov, EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Oceanic Marine Sediment Deep subsurface 58.622 18.254 1252706362 2647644 353 50 534 51 SRX2524290 Unrestricted 0.0 Metagenome 3300021115 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 31JUL2007 epilimnion DOE Joint Genome Institute (JGI) 3300021115 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 42954073 103315 47 19 64 31 Unrestricted 0.0 Metagenome 3300003353 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A2-11 DOE Joint Genome Institute (JGI) 3300003353 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 579601 1942 26 0 47 0 SRX2576217 Unrestricted 0.0 Metagenome 3300006251 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159369152 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006251 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 97416777 133745 80 0 113 0 0.0 Metagenome 3300016469 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water reservoir in Singapore - WB_Site 4, Aug Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016469 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Lake Freshwater Unclassified freshwater 1.35 103.87 99460229 136914 26 6 27 7 0.0 Metagenome 7000000425 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159207311 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000425 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 172699857 280221 0 0 0 0 0.0 Metagenome 3300027999 *Microbiome Permanent Draft Soil microbial communities from hillslopes of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 2-2-W_D DOE Joint Genome Institute (JGI) 3300027999 Metagenome Analysis spades v. 3.11.1 Yes Yes laurameredith@email.arizona.edu Laura Meredith No Engineered Artificial ecosystem Soil Mesocosm Unclassified soil 32.5789 -110.8512 3032609 9581 4 0 11 0 SRX5245815 Unrestricted 519.1 Metagenome 3300029150 *Microbiome Permanent Draft Infant fecal microbial communities from Pittsburgh, USA Infant fecal microbial communities from Pittsburgh, USA - NECEvent2014_6_1 Banfield Lab, University of California, Berkeley 3300029150 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant fecal 40.4308 -79.9598 16273270 17257 20 0 25 0 0.0 Metagenome 3300023225 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant dump, University of Wisconsin, Madison, United States - 2B50A (version 2) DOE Joint Genome Institute (JGI) 3300023225 Metagenome Analysis spades v. 3.11.1 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0758 -89.4125 108132249 134106 55 1 63 0 SRX4663567 Unrestricted 0.0 Metagenome 3300011628 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00650 Weill Cornell Medical College 3300011628 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.78 -73.96 28090127 43251 19 0 16 0 SRX822617 0.0 Metagenome 3300009192 *Microbiome Permanent Draft Genome and metagenome analysis of marine red algae Porphyra Marine algal microbial communities from Porto, Portugal - Porto_4 metaG DOE Joint Genome Institute (JGI) 3300009192 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes brawley@maine.edu, Brawley@maine.edu Susan Brawley No Host-associated Algae Unclassified Red algae Unclassified Marine 41.162 -8.622 120641886 211466 1437 4 2664 2 SRX2954902 Unrestricted 0.0 Metagenome 3300034352 *Microbiome Permanent Draft St. Lawrence estuary microbiome Marine microbial community of the St. Lawrence Estuary, Canada - S21_FL_320_05D Genome Quebec 3300034352 Metagenome Analysis Megahit v. 1.0.6 released by JGI data releasing policy Yes Yes susanne.kraemer@ed.ac.uk Susanne Kraemer No Environmental Aquatic Coastal Marine Unclassified marine 49.056 -67.17 620331507 1366813 492 52 889 102 0.0 Metagenome 3300028384 *Microbiome Permanent Draft Bras del Port September 2017 Non-marine hypersaline water viral communities from Bras del Port saltern ponds, Alicante, Spain - La Gola September 2016 University of Alicante 3300028384 Metagenome Analysis IDBA v. 1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Mar?a Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline water 38.1904 -0.5948 71190267 161195 11 0 13 0 0.0 Metagenome 3300017952 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300017952 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1701045459 3733539 1231 94 2162 144 SRX4072331 Unrestricted 17.16 Metagenome 3300070553 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_007-M-20190618-COMP-DNA1 Battelle Memorial Institute 3300070553 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 32.974426 -87.42694 4.85-5.43 5178998 17380 49 2 76 4 0.0 Metagenome 3300025231 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025231 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.9082 -79.0499 108883216 152673 42 0 60 0 SRX1991093 Unrestricted 0.0 Metagenome 3300036647 *Microbiome Permanent Draft Rhizosphere microbial communities from salt marsh grasses in Alabama, United States Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA DOE Joint Genome Institute (JGI) 3300036647 Metagenome Analysis metaspades v. 3.13.0 Yes Yes omason@fsu.edu Olivia Mason No Host-associated Plants Rhizosphere Roots Unclassified rhizosphere 30.2619 -88.2383 1290441956 2104498 654 3 1061 13 SRX8136291, SRX8136292 Unrestricted 0.0 Metagenome 3300006460 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2 of subject 764143897 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006460 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 115302432 147133 93 0 105 0 0.0 Metagenome 3300012576 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100455 University of Pennsylvania 3300012576 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 11458980 31160 18 1 28 2 SRX756543 0.0 Metagenome 3300040026 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_038-O-20160810-COMP-DNA1 Battelle Memorial Institute 3300040026 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 15809667 45562 47 9 87 16 0.0 Metagenome 3300057010 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M1P_18_20 DOE Joint Genome Institute (JGI) 3300057010 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0045281 -81.5645485 1632786260 2463301 769 2 1197 0 Unrestricted 13.49 Metagenome 3300021168 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M DOE Joint Genome Institute (JGI) 3300021168 Metagenome Analysis spades v. 3.10.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 2576588146 5232473 677 74 1174 152 SRX4029130 Unrestricted 15.0 Metagenome 3300033994 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046 DOE Joint Genome Institute (JGI) 3300033994 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1017945274 1992818 468 52 666 66 SRX7621640 Unrestricted 13.04 Metagenome 3300006182 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Synthetic microbial communities from Ohio, USA - SynthPrep_5_END_DS10_MetaG DOE Joint Genome Institute (JGI) 3300006182 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes reginalamendella@gmail.com Regina Lamendella No Engineered Bioreactor Activated sludge Aerobic Unclassified Synthetic lake water 40.0 -83.0145 120898032 231756 284 0 543 0 SRX2839588, SRX2839587 Unrestricted 0.0 Metagenome 3300038838 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample12 King Abdulaziz City for Science and Technology (KACST) 3300038838 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 18.34 40.44 18527737 46687 57 1 105 0 SRX1097578 0.0 Metagenome 3300022870 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L019-104C-5 DOE Joint Genome Institute (JGI) 3300022870 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 188635234 420115 373 92 685 174 SRX4801194 Unrestricted 12.55 Metagenome 3300049029 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - D10_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049029 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 326817236 819226 464 12 858 28 Unrestricted 0.0 Metagenome 3300043624 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 238-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043624 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9605 -107.0297 322025289 973021 441 13 842 28 Unrestricted 6.4 Metagenome 3300035551 *Microbiome Permanent Draft STAs constructed wetland biome Wetland sediment microbial communities from Everglades, Florida, USA - STA64-Sample06_1 Merge06 University of Florida 3300035551 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy No Yes ng.hanh24@gmail.com Hanh Nguyen No Environmental Aquatic Wetlands Freshwater Sediment sediment 26.38 -80.51 6.6-8.4 253494893 323744 102 0 136 0 0.0 Metagenome 3300025564 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_CordC_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025564 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.015896 -122.501663 209679310 442303 242 2 430 0 SRX7142164 Unrestricted 0.0 Metagenome 3300027033 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - At.P.e (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027033 Metagenome Analysis spades v. 3.11.1 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 20.6863 -101.8747 167801712 254676 40 64 41 101 SRX2124720 Unrestricted 0.0 Metagenome 3300013726 *Microbiome Permanent Draft Lung microbial and viral communities from cystic fibrosis patients in San Diego, USA Lung microbial and viral communities from cystic fibrosis patients in San Diego, USA - CF1-1-St-MgMD-nonhuman San Diego State University 3300013726 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Sputum/Phlegm Respiratory system Unclassified Human lung 25513887 37802 22 1 26 3 0.0 Metagenome 3300003198 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment Column4K6-90 454 Life Sciences 3300003198 Metagenome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.342219 40.479289 6-8 0 0 0 0 0 0 0.0 Metagenome 3300001951 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from North Seamore Island, Equador - GS034 J. Craig Venter Institute (JCVI) 3300001951 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine -0.38305557 -90.279724 78699872 138832 80 0 137 1 0.0 Metagenome 3300022562 *Microbiome Permanent Draft Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_7 reassembled Beijing Novogene Bioinformatics Technology Co., Ltd 3300022562 Metagenome Analysis idba v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Intertidal zone Marine Mangrove sediment Mangrove sediment 22.0 114.0 5709301810 9650330 3764 124 6619 207 0.0 Metagenome 3300069601 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Desert Southwest, AZ, USA - SRER_004-M-20170815-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069601 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.91068 -110.83549 12302841 34990 59 4 132 6 0.0 Metagenome 3300001743 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-38 DOE Joint Genome Institute (JGI) 3300001743 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 49.9853 -145.0838 61867566 172993 14 0 19 1 Unrestricted 0.0 Metagenome 3300039378 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 633_M Beijing Genomics Institute (BGI) 3300039378 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 142896020 213330 109 0 200 0 ERX491286 0.0 Metagenome 3300032893 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1 DOE Joint Genome Institute (JGI) 3300032893 Metagenome Analysis spades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified soil 26.5008 -80.2398 5071458400 10479985 2187 140 3779 243 SRX5666029 Unrestricted 9.17 Metagenome 2170459007 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm 454 Life Sciences 2170459007 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.804241 -0.372114 305312603 826370 263 4 459 9 0.0 Metagenome 2166559005 *Microbiome Permanent Draft Simulated microbial communities from Lyon, France Simulated microbial communities from Lyon, France 454 Life Sciences 2166559005 Metagenome Analysis released per JGI data release policy No Yes emmanuel.prestat@ec-lyon.fr Emmanuel Prestat No Engineered Modeled Unclassified Simulated communities (sequence read mixture) Unclassified Simulated 45.7580538 4.7649095 113089732 244235 90 8 149 10 0.0 Metagenome 3300007058 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila neotestacea female 3 gut Cornell University 3300007058 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy Yes Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila neotestacea female adult gut 43.025606 -77.572811 55383107 163646 96 10 177 31 0.0 Metagenome 3300029332 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 042_10_27_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029332 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 197056760 249177 228 0 287 0 0.0 Metagenome 3300043495 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime ecozone, Canada - Lake 07-249 Genome Quebec 3300043495 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.622179 -61.362123 982972760 2258732 436 41 758 85 0.0 Metagenome 3300034130 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Collapse_03_16 DOE Joint Genome Institute (JGI) 3300034130 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9149 -147.8357 461956608 1147319 471 51 799 59 SRX7633853 Unrestricted 6.6 Metagenome 3300015603 *Microbiome Permanent Draft Permafrost microbial communities from CRREL Tunnel near Fairbanks, Alaska Permafrost microbial communities from CRREL Tunnel near Fairbanks, Alaska - 35K California State University 3300015603 Metagenome Analysis idba_ud released by JGI data releasing policy No Yes rachel.mackelprang@csun.edu Rachel Mackelprang No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 64.951 -147.621 136989247 166118 39 3 42 2 0.0 Metagenome 3300021447 *Microbiome Permanent Draft Longitudinal study of halite endolithic microbial communities Halite endolithic microbial communities from Salar Grande, Atacama Desert, Chile - SG1-2017-02 Johns Hopkins University 3300021447 Metagenome Analysis metaSPAdes v.3.11.1 released by JGI data releasing policy Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Halite pinnacle -20.95319 -70.019951 790976118 1164211 159 12 276 9 0.0 Metagenome 3300027889 *Microbiome Permanent Draft Soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, under manipulated climate change conditions. Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027889 Metagenome Analysis spades v. 3.11.1 Yes Yes jmtalbot@bu.edu; ptempler@bu.edu Jennifer Bhatnagar; Pamela Templer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 1762949657 4145319 582 56 1112 90 SRX2838818 Unrestricted 0.0 Metagenome 2228664023 *Microbiome Permanent Draft Yunnan snub-nosed monkey fecal microbial communities from LongMa Mountain, Yunnan, China Yunnan snub-nosed monkey fecal microbial communities from LongMa Mountain, Yunnan, China - JSH Chinese Academy of Sciences 2228664023 Metagenome Analysis released per JGI data release policy No Yes xubo128028@163.com Bo Xu No Host-associated Mammals Large intestine Digestive system Fecal Yunnan snub-nosed monkey fecal 26.191097 99.201112 35571534 107887 142 0 279 0 0.0 Metagenome 3300028560 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_2 DOE Joint Genome Institute (JGI) 3300028560 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 608083057 1392641 314 45 490 92 SRX5281065 Unrestricted 0.0 Metagenome 3300070713 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lajas Experimental Station, Puerto Rico, USA - LAJA_005-M-20160913-COMP-DNA1 3300070713 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 1360096 5187 8 2 17 7 0.0 Metagenome 3300028872 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204 DOE Joint Genome Institute (JGI) 3300028872 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92044255 -106.94881797 796290654 2237772 556 23 1089 41 SRX5355402 Unrestricted 10.0 Metagenome 3300047409 *Microbiome Permanent Draft Forest soil microbial communities from boreal-temperate forests in Minnesota, USA Forest soil microbial communities from Cloquet Forestry Center, Minnesota, USA - Cloquet AMB CO E3 DOE Joint Genome Institute (JGI) 3300047409 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pankaj.trivedi@colostate.edu Pankaj Trivedi No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 46.31 -92.3 848475554 1447157 305 6 531 11 Unrestricted 0.0 Metagenome 3300027214 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027214 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2327 -123.9168 154204872 328919 145 8 233 9 SRX2753613 Unrestricted 0.0 Metagenome 7000000694 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 2, subject 763496533 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000694 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 24593874 33908 0 0 0 0 SRX024126 0.0 Metagenome 3300018866 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - late stage, 9hrs v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018866 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 265201681 535585 302 21 478 32 0.0 Metagenome 3300027867 *Microbiome Permanent Draft Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027867 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade Yes 30397342 Environmental Terrestrial Unclassified Soil Unclassified Surface soil 40.7999 -76.3402 1466710019 3281314 648 48 1132 90 SRX2837972 Unrestricted 0.0 Metagenome 3300027141 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepB_8h DOE Joint Genome Institute (JGI) 3300027141 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 132466474 263032 130 10 193 18 SRX5245179 Unrestricted 15.33 Metagenome 3300039779 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_012-M-20160728-COMP-DNA1 Battelle Memorial Institute 3300039779 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 37127164 98915 174 5 295 13 0.0 Metagenome 3300010322 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG DOE Joint Genome Institute (JGI) 3300010322 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 749605356 1812490 638 24 1185 58 SRX2525075 Unrestricted 0.0 Metagenome 3300047668 *Microbiome Permanent Draft Seawater and ice microbial communities from Arctic Ocean Seawater microbial communities from Arctic Ocean - MOSAiC PS122_425 DOE Joint Genome Institute (JGI) 3300047668 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Seawater 87.5953 94.0846 1290029713 1953757 350 241 488 330 Unrestricted 24.85 Metagenome 3300038431 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Sediment microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_East_3 DOE Joint Genome Institute (JGI) 3300038431 Metagenome Analysis metaspades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Wetlands Marine Sediment sediment 26.502 -80.2225 1551807079 2411580 615 8 1020 12 SRX9406208 Unrestricted 13.08 Metagenome 3300010403 *Microbiome Permanent Draft Terrestrial soil microbial communities with and without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3 DOE Joint Genome Institute (JGI) 3300010403 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tiedjej@msu.edu James Tiedje No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 42.3938 -85.3708 5318970639 12229165 3110 197 5411 333 SRX3295566 Unrestricted 0.0 Metagenome 3300033690 *Microbiome Permanent Draft Metagenomic SGS 2x251 Cornfield soil microbial communities from Madison, WI, USA - CF6 Illumina 3300033690 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Agricultural land Soil 43.056543 -89.477477 1091783347 2824599 577 8 827 18 0.0 Metagenome 3300040237 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_004-M-10-5-20140116-GEN-DNA1 Argonne National Laboratory 3300040237 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 7467788 20102 22 5 38 6 0.0 Metagenome 3300025380 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKF (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025380 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 118925863 225572 67 0 112 2 SRX2746696 Unrestricted 0.0 Metagenome 3300006853 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Bulk soil microbial communities from a Populus tree surrounding site in Tennessee, USA - Soil MetaG P. deltoides SBSDD4 DOE Joint Genome Institute (JGI) 3300006853 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Environmental Terrestrial Tree plantation Soil Unclassified Bulk soil 35.8443 -83.9607 4672436430 13272113 2260 65 3845 163 SRX2840449 Unrestricted 0.0 Metagenome 3300013761 *Microbiome Permanent Draft Regolith bacterial community from Guaba Ridge, Luquillo Mountains, Puerto Rico Regolith bacterial community from Guaba Ridge, Luquillo Mountains, Puerto Rico - C627 University of Wisconsin, Madison 3300013761 Metagenome Analysis MetaSPAdes v3.10 released by JGI data releasing policy Yes Yes snapieralski@wisc.edu Stephanie Napieralski No Environmental Terrestrial Unclassified Geologic Unclassified Regolith:bedrock-saprolite interface 18.28 -65.79 414752468 726128 168 4 263 11 0.0 Metagenome 3300048579 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Wood chips microbial communities from bioreactor in Golden, Colorado, USA - AB_Metals_4 DOE Joint Genome Institute (JGI) 3300048579 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Unclassified Wood chips 39.7555 -105.2211 906877062 1125170 348 14 467 23 Unrestricted 51.73 Metagenome 3300070472 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_023-O-20170711-COMP-DNA1 Battelle Memorial Institute 3300070472 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 29.722597 -81.985527 3.43-3.6 356437 1253 8 3 5 2 0.0 Metagenome 3300007750 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Stylissa sp. microbiome, Papua New Guinea CO2 seep, Upa-Upasina ""bubble"", st44is 200bp-25jan2016" University of New South Wales 3300007750 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Marine sponge (Stylissa sp.) -9.8241 150.825833 181549534 260046 16 3 14 7 0.0 Metagenome 3300048441 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_130710.NP2 DOE Joint Genome Institute (JGI) 3300048441 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 869567104 1977630 546 190 786 312 Unrestricted 12.31 Metagenome 3300027792 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027792 Metagenome Analysis spades v. 3.11.1 Yes Yes mike.wilkins@colostate.edu Michael Wilkins Yes 30086797 Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0991 -99.1044 827148561 1924541 861 24 1529 30 SRX2753781 Unrestricted 0.0 Metagenome 3300036560 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C3-1C DOE Joint Genome Institute (JGI) 3300036560 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 75140260 237754 200 5 355 6 SRX8817126 Unrestricted 4.39 Metagenome 3300000651 *Microbiome Draft Forest soil microbial communities from Amazon Forest, Brazil Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A10 DOE Joint Genome Institute (JGI) 3300000651 Metagenome Analysis released based on JGI ITS Yes Yes jorge@uta.edu, jmrodrigues@ucdavis.edu Jorge Rodrigues, Jorge L. Rodrigues Yes 30083144 Environmental Terrestrial Tropical forest Soil Bulk soil Forest soil -10.171667 -62.7875 155914064 453690 468 40 835 56 Unrestricted 0.0 Metagenome 3300042601 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Hodotermopsis sjoestedti from Tam Dao National Park, Vietnam - Hs463 Eurofins MWG Operon 3300042601 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 21.417376 105.622349 1488527177 1592934 233 56 300 65 0.0 Metagenome 3300015287 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_01AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015287 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 129184599 239789 17 48 33 71 SRX3923851 Unrestricted 10.38 Metagenome 3300042997 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jun2004-rr0420 DOE Joint Genome Institute (JGI) 3300042997 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 727782966 1142130 281 51 385 56 Unrestricted 20.21 Metagenome 3300025833 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG12_big_fil_rev_8/21/14_0.65 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025833 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 550407140 943783 589 4 874 8 SRX3348160 Unrestricted 0.0 Metagenome 3300018428 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300018428 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 2490132072 5232755 1559 202 2603 322 SRX4071712 Unrestricted 12.86 Metagenome 3300060428 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210604_08_05 DOE Joint Genome Institute (JGI) 3300060428 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 615082232 909227 253 133 336 195 Unrestricted 28.36 Metagenome 3300017759 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 37 SPOT_SRF_2012-11-28 DOE Joint Genome Institute (JGI) 3300017759 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 337517854 822404 55 11 107 15 SRX5471844, SRX5471843, SRX5471842 Unrestricted 0.0 Metagenome 3300014073 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00606 Weill Cornell Medical College 3300014073 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.79 -73.94 60952626 87557 21 0 25 0 SRX822573 0.0 Metagenome 3300029938 *Microbiome Permanent Draft Environmental microbial communities from various locations to study antibiotic resistance - The University of Hong Kong River water microbial communities from University of Hong Kong - River Water University of Hong Kong 3300029938 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified River Water 95454288 232535 92 8 191 14 SRX371702 0.0 Metagenome 3300036872 *Microbiome Permanent Draft Soil microbial communities from a coastal freshwater wetland in North Carolina, United States Soil microbial communities from coastal freshwater wetland in North Carolina, United States - 6PFC DOE Joint Genome Institute (JGI) 3300036872 Metagenome Analysis metaspades v. 3.13.0 Yes Yes peraltaa@ecu.edu Ariane Peralta No Environmental Terrestrial Wetlands Soil Unclassified soil 35.8956 -76.1655 659035646 1095659 241 9 412 16 SRX8387805 Unrestricted 12.89 Metagenome 3300005451 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_02_20cm DOE Joint Genome Institute (JGI) 3300005451 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2701885027 7955972 2403 99 4223 149 SRX2727699 Unrestricted 0.0 Metagenome 3300014185 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Indonesia to Iowa, USA - IO5 Iowa State University 3300014185 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 9926841 19690 0 3 0 0 SRX1150292 0.0 Metagenome 3300010208 *Microbiome Permanent Draft Phototrophic microbial communities Intertidal zone phototrophic microbial communities from Little Sippewissett Salt Marsh, Woods Hole, MA - SC H14a Marine Biological Laboratory 3300010208 Metagenome Analysis CLC released per JGI data release policy No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Intertidal zone Marine Salt marsh salt marsh 41.5758508 -70.635807 64828255 79435 13 0 36 0 0.0 Metagenome 3300015269 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_09MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015269 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 139986367 249960 4 17 7 22 SRX3922220 Unrestricted 11.17 Metagenome 3300065628 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 812 in Tilley, Alberta, Canada - S00JY_0236 Microbiome Insights 3300065628 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 50.2538415 -111.39339 67420318 100040 36 3 85 7 0.0 Metagenome 3300066275 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_001-O-20170717-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066275 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 7340355 23194 61 14 108 12 0.0 Metagenome 3300002703 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes from Oil sands tailings Tailings Pond 5 - 2012TP5 McGill University 3300002703 Metagenome Analysis released per JGI data release policy No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey No Engineered Built environment Petrochemical Tailings pond Wastewater Hydrocarbon resource environments 57.02 -111.55 7.5 619148724 1399910 820 6 1426 9 0.0 Metagenome 3300011475 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01016 Weill Cornell Medical College 3300011475 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.66 -73.83 17014085 26135 17 0 32 0 SRX822978 0.0 Metagenome 3300005260 *Microbiome Permanent Draft Microbial communities on the surface of biochar Kaolinite enhanced biochar microbial communities from soil with fertiliser in Sydney, Australia Australian Centre for Ecogenomics 3300005260 Metagenome Analysis IDBA_UD released per submitter No Yes j.ye@student.unsw.edu.au, j.ye@uq.edu.au JUN YE Yes 28169988 Environmental Terrestrial Biochar Soil Agricultural land soil -33.917926 151.235347 308772089 487956 446 87 740 125 0.0 Metagenome 7000000333 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 763860675 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000333 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 176488099 269993 0 0 0 0 0.0 Metagenome 3300032291 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains Ecozone, Canada - Lake 08-164 Genome Quebec 3300032291 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.274609 -77.910492 500103950 1052403 160 77 274 154 0.0 Metagenome 3300049320 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA39 DOE Joint Genome Institute (JGI) 3300049320 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 726070111 1701517 533 2 944 11 Unrestricted 8.53 Metagenome 7000000678 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765013792 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000678 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 9980129 23052 0 0 0 0 0.0 Metagenome 3300002095 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection C3 DOE Joint Genome Institute (JGI) 3300002095 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.534762 -107.782602 73108706 174109 105 21 227 32 SRX1990962 Unrestricted 0.0 Metagenome 3300033978 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002 DOE Joint Genome Institute (JGI) 3300033978 Metagenome Analysis spades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1131251948 2348255 753 201 1163 383 SRX7621628 Unrestricted 12.11 Metagenome 3300028055 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_07AUG2017_LD1 DOE Joint Genome Institute (JGI) 3300028055 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 100933963 194638 35 65 57 79 SRX5345838 Unrestricted 17.21 Metagenome 3300049643 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MG_150518 DOE Joint Genome Institute (JGI) 3300049643 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 562658057 929622 723 2 1050 5 Unrestricted 21.33 Metagenome 3300042887 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME26Nov2001-rr0332 DOE Joint Genome Institute (JGI) 3300042887 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1239980151 1887767 381 27 499 41 Unrestricted 22.0 Metagenome 3300025316 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025316 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; sari.peura@slu.se; eaeloefadrosh@lbl.gov; jkjarett@lbl.gov Ramunas Stepanauskas; Sari Peura; Emiley Eloe-Fadrosh; Jessica Jarett No Environmental Aquatic Lake Freshwater Unclassified freshwater lake hypolimnion 61.5637 22.044 1290359424 2179024 619 22 980 24 SRX2839455 Unrestricted 0.0 Metagenome 3300025947 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqB_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025947 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.209766 -122.033424 120801231 273100 206 2 349 3 SRX7142968 Unrestricted 0.0 Metagenome 3300008264 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-53-LTR University of Michigan 3300008264 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7026 -83.2538 8.738 731897011 879544 107 72 158 132 0.0 Metagenome 3300036384 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T-25 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036384 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 19319300 40549 46 2 81 6 SRX4550065, SRX7705820 Unrestricted 0.0 Metagenome 3300022688 *Microbiome Permanent Draft Carpinteria Salt Marsh Metagenomes 2014 to 2017 Sediment microbial communities from marsh intertidal zone in Carpinteria, CA, United States - S3 University of California, Irvine 3300022688 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Aquatic Intertidal zone Marine Sediment Sediment 34.401 -119.534 51579817 56606 20 1 19 2 0.0 Metagenome 3300022407 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D DOE Joint Genome Institute (JGI) 3300022407 Metagenome Analysis spades v. 3.11.1-check Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1881 -86.344 485603075 1111737 2 0 3 0 SRX8126412 Unrestricted 47.04 Metagenome 3300007510 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 250-2.7um, replicate a Georgia Genomics Facility 3300007510 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 1278983517 1704426 740 9 999 10 0.0 Metagenome 3300040199 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 023B_R1 University of Maryland 3300040199 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.25747222 24.92146667 10066427 19505 24 5 17 11 0.0 Metagenome 3300025067 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Sandy's Spring West, USA to study Microbial Dark Matter (Phase II) - SSWsed_130316 (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025067 Metagenome Analysis spades v. 3.11.1 Yes Yes brian.hedlund@unlv.edu; rstepanauskas@bigelow.org Brian Hedlund; Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring 40.653 -119.3749 7.03 137159849 238448 108 0 117 1 SRX2753882 Unrestricted 0.0 Metagenome 3300017646 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Organic Plus compost microbial communities from Emeryville, California, USA - eDNA 5th pass 30_C BE-Lig OP (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017646 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes JMGladden@lbl.gov John Gladden No Engineered Solid waste Composting Mixed feedstock Commercial compost compost 37.83 -122.29 400832115 636845 585 21 812 28 SRX3901950, SRX3901949 Unrestricted 0.0 Metagenome 3300053177 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere DOE Joint Genome Institute (JGI) 3300053177 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.12162 -123.269023 1000303673 1716019 340 190 483 243 Unrestricted 23.85 Metagenome 3300017519 *Microbiome Permanent Draft Bras del Port Julio 2014 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CCAB July 2014 University of Valencia 3300017519 Metagenome Analysis idba.1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Non-marine hypersaline water 38.1922 -0.5918 60622891 175204 5 0 11 0 0.0 Metagenome 3300048848 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD2 DOE Joint Genome Institute (JGI) 3300048848 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.347657 -119.2808 951708177 1289297 233 122 268 122 Unrestricted 28.7 Metagenome 3300061603 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D10_RHK1_4_to_SEK1 DOE Joint Genome Institute (JGI) 3300061603 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.244 988413226 2031789 715 268 1108 392 Unrestricted 0.0 Metagenome 3300025089 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Jinze hot spring, China to study Microbial Dark Matter (Phase II) - JNZ 20120812A (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025089 Metagenome Analysis spades v. 3.11.1 Yes Yes brian.hedlund@unlv.edu; rstepanauskas@bigelow.org Brian Hedlund; Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring 25.4413 98.46 6.65 167229564 247634 164 1 206 1 SRX2753919 Unrestricted 0.0 Metagenome 3300026838 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_2-Sept-14 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026838 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 45341147 126599 107 22 186 62 SRX2838885 Unrestricted 0.0 Metagenome 3300004154 *Microbiome Permanent Draft Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - High cellulose week 8 DOE Joint Genome Institute (JGI) 3300004154 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes rallen2@staffmail.ed.ac.uk Rosalind Allen No Environmental Aquatic Pond Freshwater Sediment Freshwater 55.9225 -3.1724 1541533040 4113641 1580 51 3310 84 SRX7158206 Unrestricted 0.0 Metagenome 3300039972 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_001-O-20170619-COMP-DNA1 Battelle Memorial Institute 3300039972 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 19587492 58399 78 17 163 28 0.0 Metagenome 3300031631 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from Ellis Fjord, Antarctic Ocean - #181 DOE Joint Genome Institute (JGI) 3300031631 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5958 78.1913 433198916 814487 256 38 341 50 SRX5649644 Unrestricted 29.4 Metagenome 3300042869 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jun2015-rr0390 DOE Joint Genome Institute (JGI) 3300042869 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 702190595 1039339 173 27 232 30 Unrestricted 23.17 Metagenome 3300020371 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000003 (ERX555978-ERR598991) CEA Genoscope 3300020371 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 18.4017 39.855 514551940 1258874 257 22 454 37 0.0 Metagenome 3300037486 *Microbiome Permanent Draft Sediment microbial communities from various lakes in Switzerland Sediment microbial communities from Lake Zug, Canton of Zug, Switzerland - LZug_13 DOE Joint Genome Institute (JGI) 3300037486 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mark.lever@usys.ethz.ch Mark Alexander Lever No Environmental Aquatic Lake Freshwater Sediment sediment 47.1639 8.4969 559748243 932300 205 6 314 9 SRX9147844 Unrestricted 15.65 Metagenome 3300005858 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls C (FF_Mn_C) (SPADES assembly) (version 4) DOE Joint Genome Institute (JGI) 3300005858 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, jim.fredrickson@pnnl.gov Natasha Ivanova, Jim Fredrickson No Environmental Aquatic Lotic Freshwater Unclassified Freshwater 44.376 -110.69 159158850 256694 92 0 96 1 SRX2577196, SRX2577195 Unrestricted 0.0 Metagenome 2053563014 *Microbiome Permanent Draft Hot Spring microbial communities from Great Boiling Spring, Nevada Hot spring sediment microbial communities from Great Boiling Spring, Nevada - surface sediment v1 DOE Joint Genome Institute (JGI) 2053563014 Metagenome Analysis Newbler released based on JGI ITS No Yes brian.hedlund@unlv.edu Brian P. Hedlund, Brian Hedlund Yes 23555835 Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot Spring 40.65833 -119.37772 6.37 48184699 93338 42 0 56 5 Unrestricted 0.0 Metagenome 3300049196 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - C26_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049196 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 157351009 371041 297 6 578 11 Unrestricted 0.0 Metagenome 3300003174 *Microbiome Permanent Draft Whitefly associated endosymbiont microbial communities from Neve Yaar, Israel Whitefly Bemisia tabaci associated secondary symbiont microbial communities from Neve Yaar, Israel - sample Cardinium_whitefly 3300003174 Metagenome Analysis released by JGI data releasing policy No Yes itaiopa6@gmail.com Itai Opatovsky No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Whitefly Bemisia tabaci associated 32.708101 35.179264 2110331 2281 3 0 3 0 0.0 Metagenome 3300009953 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 3 Autonomous University of Barcelona 3300009953 Metagenome Analysis SPAdes-3.8.1-Linux released per JGI data release policy Yes Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 4936465 9126 4 0 1 0 0.0 Metagenome 3300047561 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Oksrukuyik Creek, North Slope Borough, Alaska, USA - oksrukuyikcreek_2019_sw_WHONDRS-S19S_0050 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047561 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 68.6272 -149.5972 224274089 406266 211 82 343 132 Unrestricted 0.0 Metagenome 3300001438 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 DOE Joint Genome Institute (JGI) 3300001438 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 3208132 11155 79 1 128 2 SRX1989935, SRX1989936, SRX1989937, SRX1989938 0.0 Metagenome 3300043318 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-355 Genome Quebec 3300043318 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.986539 -107.935004 1582812058 3460597 681 169 1056 385 0.0 Metagenome 3300015159 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G3C, Proglacial river margin, by glacier terminus) University of Bristol 3300015159 Metagenome Analysis SAPDES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.152107 -50.048517 6.63 157627061 341383 114 7 220 9 0.0 Metagenome 2013843001 *Microbiome Permanent Draft Activated sludge microbial communities from Commune de Morges, Switzerland Activated sludge microbial communities from Commune de Morges, Switzerland - plasmid pool Morges-2007 (PGA) DOE Joint Genome Institute (JGI) 2013843001 Metagenome Analysis lucy / pga No Yes sgtringe@lbl.gov Susannah Tringe Yes 23407308 Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Activated sludge Wastewater plasmid pools 46.51668 6.510145 7 28569177 43340 1 0 0 0 0.0 Metagenome 3300056599 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Activated sludge microbial communities from bioreactor in WWTP, Madison, WI, USA - RS_2021-08-19_SampleA DOE Joint Genome Institute (JGI) 3300056599 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.03331 -89.35633 856979476 698207 147 45 149 44 Unrestricted 14.12 Metagenome 3300006126 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH01Aug08 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006126 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 322005614 857886 314 97 497 152 SRX2565402 Unrestricted 0.0 Metagenome 3300013782 *Microbiome Permanent Draft Marine Prochlorococcus and Synechococcus communites from Sargasso sea and California currents Marine microbial communites from Sargasso Sea - Prochlorococcus B258 surface rep 1 UCI 3300013782 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 4311040 12850 14 0 29 0 SRX379260 0.0 Metagenome 3300026130 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_H2O_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026130 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Water 37.496 -122.1329 189850578 385305 290 56 397 79 SRX2523667 Unrestricted 0.0 Metagenome 3300002827 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A5-10 DOE Joint Genome Institute (JGI) 3300002827 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 320189 1095 22 0 28 0 SRX1991123 Unrestricted 0.0 Metagenome 3300043365 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 268-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043365 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9812 -107.0403 337132409 988531 434 19 773 40 Unrestricted 6.55 Metagenome 3300071040 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_002-M-20180709-COMP-DNA1 3300071040 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 35936338 113911 103 12 191 19 0.0 Metagenome 3300018073 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1 DOE Joint Genome Institute (JGI) 3300018073 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 .05 842366669 1854059 718 24 1321 46 SRX3939400 Unrestricted 5.09 Metagenome 3300020217 *Microbiome Permanent Draft Processed tobacco microbial communities from Domestic Moist Snuff USA Processed tobacco microbial communities from Atlanta, GA, USA - retail point 1 - domestic moist snuff M6 SPADES Meta re-assembly Centers for Disease Control and Prevention (CDC), USA 3300020217 Metagenome Analysis SPADES Meta 3.10.0 released by Tyx Yes Yes wyu3@cdc.gov Robert E. Tyx No Engineered Food production Unclassified Unclassified Unclassified Processed toboaco 33.881 -84.294 27811141 35320 33 6 21 8 0.0 Metagenome 3300032105 *Microbiome Permanent Draft Microbial communities from the deep biosphere Marine sediment microbial communities from North Pond in Mid-Atlantic Ridge, Atlantic Ocean - 1383E_lower re-assembly The Marine Biological Laboratory 3300032105 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Sediment Marine Unclassified Sediment 22.8 -46.05 102813702 226273 82 11 165 31 SRX2505629 0.0 Metagenome 3300005150 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F09 DOE Joint Genome Institute (JGI) 3300005150 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 49150263 68583 80 0 103 0 SRX3195098 Unrestricted 0.0 Metagenome 3300027635 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027635 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 325735453 797823 210 42 430 61 SRX3312015 Unrestricted 0.0 Metagenome 3300043559 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield ecozone, Canada - Lake 06-275 Genome Quebec 3300043559 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.230934 -95.682275 1431813871 3365130 812 112 1444 215 0.0 Metagenome 3300025192 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0145 (SPAdes) DOE Joint Genome Institute (JGI) 3300025192 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 14.52 -26.0 43858761 89550 68 0 95 0 SRX1983335 Unrestricted 0.0 Metagenome 3300012537 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100345 University of Pennsylvania 3300012537 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4125748 5157 3 1 5 2 SRX756312 0.0 Metagenome 3300006672 *Microbiome Permanent Draft Marine benthic sponge associated microbial communities from Guam, USA GUM007 Lamellodysidea herbacea marine benthic sponge microbial communities from Pago Bay, Guam, USA - GUM7E1 University of California, San Diego, Scripps Institute of Oceanography 3300006672 Metagenome Analysis IDBA-ud version 1.1.1 released per PI No Yes spodell@ucsd.edu Sheila Podell Yes 31088928 Host-associated Porifera Unclassified Unclassified Unclassified Marine benthic 13.416337 144.790192 5477330 5373 1 0 1 0 0.0 Metagenome 3300019788 *Microbiome Permanent Draft Permafrost microbial communities from Stordalen Mire, Sweden Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction) DOE Joint Genome Institute (JGI) 3300019788 Metagenome Analysis metalrec/blasr v. metalrec version 1.0.2/blasr 1.3.1 Yes Yes rich.270@osu.edu Virginia Rich Yes 30013118 Environmental Terrestrial Wetlands Soil Permafrost Fen 68.35 19.05 788536388 1421252 376 0 562 0 SRX3904701, SRX3904703, SRX3904702, SRX3904705, SRX3904704, SRX3904707, SRX3904706, SRX3904708 Unrestricted 23.0 Metagenome 3300012811 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - DID2877_E24_Xylan MG DOE Joint Genome Institute (JGI) 3300012811 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 72633020 96433 70 0 88 0 SRX3564802 Unrestricted 0.0 Metagenome 3300049312 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA24 DOE Joint Genome Institute (JGI) 3300049312 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 316007472 921030 488 3 810 7 Unrestricted 7.03 Metagenome 3300003347 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM DOE Joint Genome Institute (JGI) 3300003347 Metagenome Analysis revert back to private per Christa Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 33574668 91204 195 8 303 11 SRX2573616 Unrestricted 0.0 Metagenome 3300001106 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0327 DOE Joint Genome Institute (JGI) 3300001106 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -9.12 -30.19 31899950 78438 64 3 114 10 SRX1983268 Unrestricted 0.0 Metagenome 3300064928 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 738 in Killam, Alberta, Canada - S00JY_0796 Microbiome Insights 3300064928 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.4334824 -111.5420862 2390549 3649 15 1 33 4 0.0 Metagenome 3300070547 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_004-M-20170612-COMP-DNA1 Battelle Memorial Institute 3300070547 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 32.957884 -87.432614 4.86-5.14 1066314 3405 17 4 26 9 0.0 Metagenome 3300038617 *Microbiome Permanent Draft Seawater microbial communities from the Baltic Proper 10 km east of Oland, Sweden Seawater microbial communities from the Baltic Proper 10 km east of Oland, Sweden - LMO_121105 Royal Institute of Technology 3300038617 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 26667648 Environmental Aquatic Unclassified Marine Unclassified Seawater 56.93085 17.060667 37272774 97013 59 12 113 18 SRX1050767 0.0 Metagenome 3300045144 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_450m_2014 DOE Joint Genome Institute (JGI) 3300045144 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 1411314366 2657233 1031 16 1805 18 Unrestricted 12.73 Metagenome 3300026352 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_ThreeSqC_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300026352 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.131752 -122.266335 142362338 317341 181 2 288 1 SRX7150275 Unrestricted 0.0 Metagenome 3300010386 *Microbiome Permanent Draft Acid mine drainage microbial communities from Malanjkhand copper mine, India Acid mine drainage microbial communities from Malanjkhand copper mine, India - M8 kmer 63 Xcelris labs Ltd 3300010386 Metagenome Analysis Metavelvet released per JGI data release policy No Yes psar@hijli.iitkgp.ernet.in Pinaki Sar No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage sediment 21.9985 80.697983 245915677 570152 386 63 555 97 0.0 Metagenome 3300004264 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius ilvae PIANOSA.2 DOE Joint Genome Institute (JGI) 3300004264 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 667874099 1632819 19 5 27 11 SRX3340583 Unrestricted 0.0 Metagenome 3300035658 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS56_12 University of Hohenheim 3300035658 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 67024165 102519 75 0 127 0 0.0 Metagenome 3300042142 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913L_E14_072516_1610 DOE Joint Genome Institute (JGI) 3300042142 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.1836 -97.9974 255975891 710706 367 16 662 20 Unrestricted 7.12 Metagenome 3300019367 *Microbiome Permanent Draft Mouse fecal microbial communities from Athens, Georgia, USA Mouse fecal microbial communities from Athens, Georgia, USA - 8J1D Georgia Genomics Facility 3300019367 Metagenome Analysis megahit released by JGI data releasing policy No Yes ptu@live.unc.edu Pengcheng Tu No Host-associated Mammals Large intestine Digestive system Fecal mouse fecal 33.9519 -83.3576 40750529 59366 81 1 83 1 0.0 Metagenome 3300024055 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6 DOE Joint Genome Institute (JGI) 3300024055 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 687076065 1763754 664 46 1296 64 SRX4926827 Unrestricted 7.62 Metagenome 3300040276 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 079B_R1 University of Maryland 3300040276 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.52702 19.01423 7280822 17267 22 2 22 4 0.0 Metagenome 7000000704 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159753524 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000704 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 13301377 22569 0 0 0 0 0.0 Metagenome 3300059435 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - ATCcR2C-21 DOE Joint Genome Institute (JGI) 3300059435 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 94818469 131476 80 7 115 7 Unrestricted 0.0 Metagenome 3300001831 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM4, ROCA_DNA074_0.2um_10l 3300001831 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River plume Marine Plankton Marine plankton 4.8818 -51.3608 59362170 107733 39 4 68 2 0.0 Metagenome 3300005332 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) DOE Joint Genome Institute (JGI) 3300005332 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov, cpan@ou.edu Susannah Tringe, Chongle Pan No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 9.1086 -79.8436 17491572566 45672840 9356 305 16760 519 SRX4807071, SRX4807072, SRX4807073, SRX4807074, SRX4807075 Unrestricted 0.0 Metagenome 3300044848 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - WIN4-9-12-19 DOE Joint Genome Institute (JGI) 3300044848 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.4255 -120.5761 482719719 1205414 559 26 1002 42 Restricted 7.42 Metagenome 3300013544 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Human oral microbial communities from various locations - University of British Columbia - SCG42 University of British Columbia 3300013544 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Unclassified Human oral 347560 954 2 1 9 1 SRX143151 0.0 Metagenome 3300069508 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_009-O-20170621-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069508 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 76028076 196728 72 15 110 30 0.0 Metagenome 3300002334 *Microbiome Permanent Draft Marine biofilm microbial communities from the Mid-Atlantic, from a ridge-flank borehole North Pond borehole 395A, 173 mbsf, polyester segment 3300002334 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes andrew.gross@usc.edu Andrew R Gross No Environmental Aquatic Oceanic Marine Unclassified Marine biofilm 22.755865 -46.081015 7 729587621 1483606 360 77 663 163 0.0 Metagenome 3300043719 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - Rondonia_Forest_1_C100m DOE Joint Genome Institute (JGI) 3300043719 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.169 -62.782 563941434 1493915 382 2 668 4 Unrestricted 8.35 Metagenome 3300023075 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T-25 DOE Joint Genome Institute (JGI) 3300023075 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 297108821 648180 253 7 487 8 SRX4415301, SRX7705519 Unrestricted 0.0 Metagenome 3300038958 *Microbiome Permanent Draft Sediment microbial communities from Manikaran hot springs, India Sediment microbial communities from Manikaran hot springs, India - R_MNS3 University of Delhi 3300038958 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Sediment Thermal springs Unclassified Sediment 32.02 77.34 111327935 262251 167 0 315 1 0.0 Metagenome 3300007522 *Microbiome Permanent Draft Freshwater microbial communities from lake liftoff mats and glacier meltwater in Antarctica Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-01 DOE Joint Genome Institute (JGI) 3300007522 Metagenome Analysis MEGAHIT v.1.0.3 Yes Yes slonczewski@kenyon.edu Joan Slonczewski No Environmental Aquatic Ice Freshwater Glacier meltwater Freshwater -77.714 162.445 2175061711 3517134 549 264 780 356 SRX2753507 Unrestricted 0.0 Metagenome 3300001517 *Microbiome Permanent Draft Sheep rumen microbial communities from New Zealand from high and low methane emitting sheep Sheep rumen microbial communities from New Zealand - Rank42_high DOE Joint Genome Institute (JGI) 3300001517 Metagenome Analysis Velvet Released because these are assemblies from SRA data No Yes janine.kamke@agresearch.co.nz, janine.kamke@uni-wuerzburg.de Janine Kamke No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen -40.352 175.608 146772932 305704 436 45 553 74 0.0 Metagenome 3300011521 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00421 Weill Cornell Medical College 3300011521 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.77 -73.91 23928277 31903 9 0 11 0 SRX822390 0.0 Metagenome 3300030737 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_2 DOE Joint Genome Institute (JGI) 3300030737 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 1425455319 2893408 468 37 778 66 SRX5357863 Unrestricted 13.68 Metagenome 3300023183 *Microbiome Permanent Draft Wastewater microbia communities from Base Mine Lake, Ft. McMurray, Alberta, Canada Wastewater microbial communities from Base Mine Lake, Ft. McMurray, Alberta, Canada - Surface, March 2017 University of Calgary 3300023183 Metagenome Analysis SPAdes v. 3.8.0-Linux released by JGI data releasing policy No Yes dunfield.bio@gmail.com Dunfield Laboratory No Engineered Built environment Unclassified Tailings pond Unclassified wastewater 56.73 -111.38 8-9 62288404 115361 49 6 82 7 0.0 Metagenome 3300032059 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27 DOE Joint Genome Institute (JGI) 3300032059 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 2823375182 6743263 940 11 1868 24 SRX5820198 Unrestricted 14.01 Metagenome 3300012465 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100337 University of Pennsylvania 3300012465 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17566399 29911 39 7 70 14 SRX756320 0.0 Metagenome 3300008154 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human palatine tonsils microbial communities from NIH, USA - visit 2, subject 763961826 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008154 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Tonsils Lymphatic system Palatine/Faucial Human 39.0042816 -77.1012173 146249299 234086 121 0 156 0 SRX024895 0.0 Metagenome 3300017832 *Microbiome Draft Feedstock adapted compost microbial communities from Newby Island compost facility, Milpitas CA Feedstock adapted compost microbial communities from Newby Island compost facility, Milpitas, CA, USA - Passage 4_SG DOE Joint Genome Institute (JGI) 3300017832 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Solid waste Composting Feedstock Unclassified Feedstock adapted compost 37.454581 -121.928712 369208357 984060 801 29 1225 50 Unrestricted 0.0 Metagenome 3300009380 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Final time point T34 (1) (live) benzoate enrichments of Methanogenic microbial communities using Athabasca oil sands as inoculum DE NOVO (2) Shell Corporation 3300009380 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 82559060 236386 76 0 168 2 0.0 Metagenome 3300049279 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA34 DOE Joint Genome Institute (JGI) 3300049279 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 299544603 757579 389 7 712 8 Unrestricted 7.58 Metagenome 3300004817 *Microbiome Permanent Draft Hypersaline lake viral communities from Bras del Port, Santa Pola, Alicante, Spain Hypersaline lake viral communities from Bras del Port, Santa Pola, Alicante, Spain - SAL2 dirigido Enero 2015 University of Alicante 3300004817 Metagenome Analysis IDBA 1.1.1 Pre_correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline lake 38.19317 -0.59268 7 5923250 20922 4 0 2 0 0.0 Metagenome 3300041548 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_387 MetaG AgResearch, New Zealand, Mosgeil 3300041548 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1752569204 3643452 345 27 1287 51 0.0 Metagenome 3300030458 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from adenoma patient in Toronto, Canada - MG100190 University of Michigan 3300030458 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 43.65 -79.38 12185928 23117 30 0 54 1 0.0 Metagenome 3300045211 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_4_E DOE Joint Genome Institute (JGI) 3300045211 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 179584062 219476 90 1 113 3 Unrestricted 117.86 Metagenome 3300038352 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog1 BILS 3300038352 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 8306188 21359 19 5 15 3 ERX1594823 0.0 Metagenome 3300031538 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1 DOE Joint Genome Institute (JGI) 3300031538 Metagenome Analysis spades v. 3.12.0 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Bulk soil soil 39.6475 -79.9369 2146163422 5457649 1363 8 2496 20 SRX5661644 Unrestricted 7.28 Metagenome 3300013989 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00927 Weill Cornell Medical College 3300013989 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.74 -73.95 13358165 20078 6 0 16 0 SRX822890 0.0 Metagenome 3300057022 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Wyoming, USA - R_L2_S1 DOE Joint Genome Institute (JGI) 3300057022 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 41.02931 -106.63321 12329565 23809 26 17 46 28 Unrestricted 320.8 Metagenome 2140918004 *Microbiome Permanent Draft Marine sediment archaeal communities from Santa Barbara Basin, CA, that are anaerobic and methane-oxidizing Marine sediment archaeal communities from Santa Barbara Basin, CA, that are methane-oxidizing, sample 15-18 cm DOE Joint Genome Institute (JGI) 2140918004 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Sediment Marine sediment 34.21 -119.5 21758522 48112 34 2 55 0 Unrestricted 0.0 Metagenome 3300046818 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 soil DOE Joint Genome Institute (JGI) 3300046818 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.588056 -123.194069 6.6 591971819 1085296 353 26 673 29 Unrestricted 18.69 Metagenome 3300005938 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191 DOE Joint Genome Institute (JGI) 3300005938 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Permafrost Soil 68.6137 -149.3144 580605983 1660623 449 8 793 14 SRX2739471 Unrestricted 0.0 Metagenome 3300056844 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Towuti Lake, South Sulawesi, Indonesia - Towuti_150m_2015 DOE Joint Genome Institute (JGI) 3300056844 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.7 121.4 1172185669 2178652 751 10 1256 19 Restricted 14.12 Metagenome 3300031145 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States - P4_Day56_Rep1 DOE Joint Genome Institute (JGI) 3300031145 Metagenome Analysis spades v. 3.12.0 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass growth medium 37.8406 -122.2901 108478486 143124 112 0 135 0 SRX5660656 Unrestricted 168.74 Metagenome 3300003980 *Microbiome Permanent Draft Hydrate Ridge Gastropod Epibiont Candidatus Thiomargarita nelsonii HR-S10 and Its Epibiont Community Thiomargarita nelsonii Hydrate Ridge bud S10 & epibionts metagenome Mayo Clinic, Stanford University, University of Minnesota 3300003980 Metagenome Analysis Hybrid Illumina and PacBio Released per Beverly Flood (Feb 16, 2016), 2016) No Yes baileyj@umn.edu Jake Bailey No Host-associated Mollusca Unclassified Shell Unclassified epibionts on Provanna snail 32171428 32272 14 0 23 0 0.0 Metagenome 3300020533 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 08JUN2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020533 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 109760560 243697 108 12 202 24 SRX1989775 Unrestricted 0.0 Metagenome 3300008638 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763435843 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008638 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 138250690 186939 101 0 115 0 0.0 Metagenome 3300026958 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - Naphthalene biodegradation metagenome 13C8doseB (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026958 Metagenome Analysis spades v. 3.11.1 Yes Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.292222 -73.604444 10564115 26360 13 3 16 6 Unrestricted 0.0 Metagenome 3300051366 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - HDCR1C-21 DOE Joint Genome Institute (JGI) 3300051366 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 209609753 365601 183 12 268 13 Unrestricted 86.73 Metagenome 3300040747 *Microbiome Permanent Draft Microbial community composition of arsenic contaminated rice paddy soil collected from severe arsenic contaminated areas of West Bengal, India Contaminated soil microbial communities from rice paddy field in Bethuadahari, West Bengal, India - S8 CeGaT 3300040747 Metagenome Analysis MEGAHIT v. 1.2.9 released by JGI data releasing policy No Yes himaash2007@gmail.com HIMADRI BOSE No Environmental Terrestrial Paddy field/soil Soil Contaminated contaminated soil 23.38433 88.25009 7-8 185494588 434992 326 6 558 16 0.0 Metagenome 3300014675 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01488 Weill Cornell Medical College 3300014675 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.61 -74.0 35486790 53386 21 0 38 0 SRX823368 0.0 Metagenome 3300022581 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 1 Selected contigs with viral hallmark genes Autonomous University of Barcelona 3300022581 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 879651 1400 0 0 0 0 0.0 Metagenome 3300000765 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 02JUL2007 epilimnion DOE Joint Genome Institute (JGI) 3300000765 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300042791 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T3_25-Nov-14 NMDC pilot DOE Joint Genome Institute (JGI) 3300042791 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 58413209 132716 130 40 244 51 SRX2838892 0.0 Metagenome 3300039002 *Microbiome Permanent Draft Terrestrial microbial communities from swamp soil in Malaysia Terrestrial microbial communities from swamp soil in Malaysia - RA University of Malaya 3300039002 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial 4.902 103.36 957118078 1874308 279 3 613 1 SRX243587 0.0 Metagenome 3300050510 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation DOE Joint Genome Institute (JGI) 3300050510 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Host-associated Plants Rhizosphere Roots Soil Populus rhizosphere 35.8443 -83.9607 3851904016 8444192 1541 46 2756 74 SRX2923933 0.0 Metagenome 3300029260 *Microbiome Permanent Draft ACE Virus Marine viral community from the Austral Polar Province, Southern Ocean - ACE 064AD University of Michigan 3300029260 Metagenome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes duhaimem@umich.edu Melissa Duhaime No Environmental Aquatic Unclassified Marine Unclassified Marine -62.3239 147.4162 147336387 221685 110 4 158 9 0.0 Metagenome 3300047526 *Microbiome Permanent Draft Floating fern leaf microbial communities from various locations Floating fern leaf microbial communities from Oakland, California, United States - UCBG_FI_2 DOE Joint Genome Institute (JGI) 3300047526 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dave.armitage@gmail.com David Armitage No Host-associated Plants Phylloplane/Leaf Phyllosphere Endophytes Leaf 37.8754 -122.2396 33466625 37703 20 1 23 2 Unrestricted 590.43 Metagenome 3300001014 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1095 DOE Joint Genome Institute (JGI) 3300001014 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 68097 232 18 0 22 0 SRX3311887 Unrestricted 0.0 Metagenome 3300006161 *Microbiome Finished Hypersaline microbial communities from the Dead Sea Hypersaline microbial communities from the Dead Sea 2007 Technion-Israel Institute of Technology 3300006161 Metagenome Analysis Newbler released per PI No Yes redcancerbero@gmail.com, alm067@ucsd.edu Alvaro M. Plominsky No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Dead Sea 31.416667 35.433333 0 0 0 0 0 0 0.0 Metagenome 3300006847 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 DOE Joint Genome Institute (JGI) 3300006847 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Host-associated Plants Rhizosphere Roots Soil Populus rhizosphere 35.8443 -83.9607 5274434735 14583752 2390 59 4097 114 SRX2923933 Unrestricted 0.0 Metagenome 3300012213 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100101 University of Pennsylvania 3300012213 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 1290263 3685 3 0 4 0 SRX756729 0.0 Metagenome 3300032132 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #5 DOE Joint Genome Institute (JGI) 3300032132 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.7507 -122.0138 942692322 1485345 445 0 645 2 SRX6423991 Unrestricted 35.46 Metagenome 3300013655 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00339 Weill Cornell Medical College 3300013655 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.72 -74.0 15910090 18733 4 0 11 0 SRX822312 0.0 Metagenome 3300029451 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001823-33 Beijing Genomics Institute (BGI) 3300029451 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 55279509 69614 60 0 104 0 0.0 Metagenome 3300013967 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Human oral microbial communities from various locations - University of British Columbia - SCG22 University of British Columbia 3300013967 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Unclassified Human oral 382551 1090 2 0 2 0 SRX143131 0.0 Metagenome 3300002146 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection A2 DOE Joint Genome Institute (JGI) 3300002146 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.53 -107.78 118930077 269038 214 1 409 6 SRX1990955 Unrestricted 0.0 Metagenome 3300000272 *Microbiome Permanent Draft Marine microbial communities from a deep-sea hydrothermal vent at Loihi Seamount, Hawaii Marine microbial communities from hydrothermal vents at Loihi seamountain, Hawaii Pennsylvania State University 3300000272 Metagenome Analysis mira 3.0.4 released per JGI data release policy No Yes esthersi@usc.edu Esther Singer Yes 23518919 Environmental Aquatic Hydrothermal vents Marine Unclassified Marine 18.921551 -155.935879 8 11279045 14844 7 1 7 0 0.0 Metagenome 3300000718 *Microbiome Permanent Draft Marine sediment microbial communities from Shelf off Concepcion, Chile Thioploca araucaea microbial mats J. Craig Venter Institute (JCVI) 3300000718 Metagenome Analysis Newbler 2.6 released per JGI data release policy No Yes jugalde@ucsd.edu Juan Ugalde No Environmental Aquatic Oceanic Marine Sediment Marine sediment -36.608333 -73.01 6226717 10716 3 2 3 2 0.0 Metagenome 3300035134 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0606U20 DOE Joint Genome Institute (JGI) 3300035134 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8973 -97.0409 681190116 1624321 617 7 1047 8 SRX8257321 Unrestricted 6.44 Metagenome 3300070660 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_037-M-20170801-COMP-DNA1 3300070660 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 85201376 247036 94 5 158 10 0.0 Metagenome 7000000188 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 675950834 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000188 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 135217171 200287 0 0 0 0 0.0 Metagenome 3300027602 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius albidus HERON ISLAND.1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027602 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 53.109679 8.847516 651091408 711865 3 4 4 5 SRX2577501 Unrestricted 0.0 Metagenome 3300003890 *Microbiome Permanent Draft Hot spring sediment microbial communities from Chocolate Pots, Yellowstone National Park, Wyoming that are Fe(III) reducing - CP Core 3 , 1cm Hot spring sediment microbial communities from Chocolate Pots, Yellowstone National Park, Wyoming that are Fe(III) reducing - Chocolate Pots Core 3, 1cm University of Wisconsin, Madison 3300003890 Metagenome Analysis CLC Genomics Workbench released per JGI data release policy Yes Yes bconverse@wisc.edu Brandon Converse No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediments 44.427936 -110.588466 235094518 439116 218 1 367 3 0.0 Metagenome 3300011566 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00859 Weill Cornell Medical College 3300011566 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.7 -73.81 21923010 36070 11 0 16 0 SRX822825 0.0 Metagenome 3300065521 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 793 in Claresholm, Alberta, Canada - S00JY_0091 Microbiome Insights 3300065521 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 50.0026073 -113.3303972 35949923 53053 29 0 53 0 0.0 Metagenome 3300022178 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3) (version 3) DOE Joint Genome Institute (JGI) 3300022178 Metagenome Analysis spades v. 3.11.1-check Yes Yes chenf@umces.edu; bcampb7@clemson.edu Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.124826 -75.260873 278294593 620676 31 1 53 4 SRX3300988, SRX3300989, SRX2745058 Unrestricted 0.0 Metagenome 3300014223 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 181_D2_2014-5-14 San Diego State University 3300014223 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 179901 563 10 6 15 12 0.0 Metagenome 3300037244 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPN2-1-D DOE Joint Genome Institute (JGI) 3300037244 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3628 19.0528 1012070252 1866349 302 26 463 39 SRX8166972 Unrestricted 8.87 Metagenome 7000000571 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160582958 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000571 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 57097122 114213 0 0 0 0 0.0 Metagenome 3300013899 *Microbiome Permanent Draft Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 294 Chalmers University of Technology 3300013899 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 78971833 150304 69 2 125 5 SRX193533 0.0 Metagenome 3300012034 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT526_2 DOE Joint Genome Institute (JGI) 3300012034 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.978 -107.003 214284066 528363 344 34 791 42 SRX3539346 Unrestricted 0.0 Metagenome 3300009947 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 67 mira Center for Advanced Technologies in Genomics, Sao Paulo University 3300009947 Metagenome Analysis mira released per JGI data release policy No Yes joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 45575039 78261 211 2 317 4 0.0 Metagenome 3300023249 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #937 DOE Joint Genome Institute (JGI) 3300023249 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 161447324 297086 156 0 228 0 SRX4397208 Unrestricted 14.67 Metagenome 3300046411 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_161026.NP1 DOE Joint Genome Institute (JGI) 3300046411 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 889029329 1916986 625 120 1034 207 Unrestricted 11.11 Metagenome 7000000449 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764143897 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000449 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 115652778 201207 0 0 0 0 0.0 Metagenome 3300031417 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLSB.R2 DOE Joint Genome Institute (JGI) 3300031417 Metagenome Analysis spades v. 3.12.0 Yes Yes icelab@berkeley.edu Steven Lindow No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 37.8864 -122.2981 999143447 1851572 517 62 637 69 SRX5658574 Unrestricted 41.49 Metagenome 3300027440 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G08K2-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300027440 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 7669901 24487 59 1 114 2 SRX1991280 Unrestricted 0.0 Metagenome 3300037422 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from California, United States - Warm Spring A (WSA_S4) DOE Joint Genome Institute (JGI) 3300037422 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified Desert spring 37.2656 -118.2713 7.62 2920876102 3975404 987 25 1476 33 SRX9470712 Unrestricted 14.69 Metagenome 3300070964 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Agroecosystem, Kansas, USA - KONA_057-M-20190618-COMP-DNA1 3300070964 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Agricultural land Soil 77341 284 4 0 2 0 0.0 Metagenome 3300006099 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t1_683P_control - viral_metagenome University of Texas Southwestern Medical Center 3300006099 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.815891 -96.846336 123093889 240277 93 0 142 0 0.0 Metagenome 3300014903 *Microbiome Permanent Draft Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay12, Core 4567-28, 21-24 cm DOE Joint Genome Institute (JGI) 3300014903 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nd.microbiota@gmail.com Nina Dombrowski Yes 30479325 Environmental Aquatic Hydrothermal vents Marine Sediment marine sediment 27.009 -111.4081 1154633378 2619252 925 4 1756 9 SRX3568920 Unrestricted 5.74 Metagenome 3300053136 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere DOE Joint Genome Institute (JGI) 3300053136 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121519 -123.270589 1007173353 1936139 448 140 703 215 Unrestricted 13.83 Metagenome 3300029858 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37314 Beijing Genomics Institute (BGI) 3300029858 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 204929011 247072 169 0 229 3 0.0 Metagenome 3300025953 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025953 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.198971 -122.026955 133067146 295566 221 2 354 2 SRX7142962 Unrestricted 0.0 Metagenome 3300049657 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_B_0_drought DOE Joint Genome Institute (JGI) 3300049657 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 65295201 136370 130 5 251 7 Unrestricted 18.18 Metagenome 3300014866 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT890_16_10D DOE Joint Genome Institute (JGI) 3300014866 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9223 -106.9517 165359642 387273 234 13 474 31 SRX3780505 Unrestricted 3.93 Metagenome 3300009089 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG DOE Joint Genome Institute (JGI) 3300009089 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 2678743412 5123091 1216 19 2042 43 SRX2933126 Unrestricted 0.0 Metagenome 3300037111 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPN1-2-D DOE Joint Genome Institute (JGI) 3300037111 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3568 19.0503 643278497 1121845 178 8 278 3 SRX8163121 Unrestricted 13.52 Metagenome 3300025741 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG04_land_8/20/14_0.20 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025741 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 5651465 19091 26 0 38 3 SRX3348125 Unrestricted 0.0 Metagenome 3300049918 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Benson, Utah, USA - logan1_2019_sed_WHONDRS-S19S_0097 DOE Joint Genome Institute (JGI) 3300049918 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 41.720847 -111.8865 282796400 702952 812 35 1638 60 Restricted 12.9 Metagenome 3300005305 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - engineered for negative control 1 Cornell University 3300005305 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy No Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Engineered Unclassified Unclassified Unclassified Unclassified Negative control 42.445525 -76.480787 668165 1494 0 0 0 2 0.0 Metagenome 3300045813 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_3_B DOE Joint Genome Institute (JGI) 3300045813 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 176002632 218623 109 1 113 1 Unrestricted 139.65 Metagenome 3300021572 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-100-LTR Downsampled Assembly University of Michigan 3300021572 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7026 -83.2538 8.738 23876726 41132 13 25 19 32 0.0 Metagenome 3300028653 *Microbiome Permanent Draft Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG DOE Joint Genome Institute (JGI) 3300028653 Metagenome Analysis spades v. 3.11.1 Yes Yes rbneum@uw.edu Rebecca Neumann No Host-associated Plants Rhizosphere Roots Soil rhizosphere 47.6516 -122.3045 637414604 1453092 412 2 746 11 SRX5271538 Unrestricted 10.49 Metagenome 3300042508 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME22Aug2016-rr0558 DOE Joint Genome Institute (JGI) 3300042508 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1044979934 1588345 431 56 592 77 Unrestricted 17.11 Metagenome 3300000558 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011 McGill University 3300000558 Metagenome Analysis released per user request No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 57.02 -111.55 1148076561 3021632 1143 46 2213 103 0.0 Metagenome 3300049045 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - I26_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049045 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 197990723 472313 435 4 889 10 Unrestricted 0.0 Metagenome 3300007236 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA DOE Joint Genome Institute (JGI) 3300007236 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 722845395 1931343 518 213 874 377 SRX2751898 Unrestricted 0.0 Metagenome 3300016265 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water reservoir in Singapore - WB_Site 1, Oct Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016265 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Lake Freshwater Unclassified freshwater 1.28 103.87 96461452 148703 17 8 29 10 0.0 Metagenome 3300049566 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - AG_050217 DOE Joint Genome Institute (JGI) 3300049566 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Unclassified Soil Grasslands soil 41.893 -89.305 344269171 985922 521 15 948 31 Unrestricted 0.0 Metagenome 3300048071 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Woodchip biofilm microbial communities from lab scale WBR in Cornell University, Ithaca, NY, USA - rep1_cs_p1_w0 DOE Joint Genome Institute (JGI) 3300048071 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 953741388 1883654 609 31 1012 54 Unrestricted 10.01 Metagenome 7000000229 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 809635352 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000229 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 1279052 2668 0 0 0 0 0.0 Metagenome 3300027220 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1546C-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027220 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2311 -123.8825 150829159 305769 142 8 217 7 SRX2753625 Unrestricted 0.0 Metagenome 3300037242 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPON1-2-X0 DOE Joint Genome Institute (JGI) 3300037242 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3569 19.0502 1163982814 2130543 364 16 660 32 SRX8174155 Unrestricted 10.23 Metagenome 3300025178 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP1201 (SPAdes) DOE Joint Genome Institute (JGI) 3300025178 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -30.33 103.31 55886618 125296 80 25 127 33 SRX1982585 Unrestricted 0.0 Metagenome 3300023429 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1696 DOE Joint Genome Institute (JGI) 3300023429 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 165138532 263562 61 18 81 31 SRX4397915 Unrestricted 15.29 Metagenome 3300040587 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_007-O-20170719-COMP-DNA1 Battelle Memorial Institute 3300040587 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 1905952 6149 31 4 40 11 0.0 Metagenome 3300027900 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from the University of Notre Dame, USA, of lakes that contribute to methane emissions Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027900 Metagenome Analysis spades v. 3.11.1 Yes Yes sjones20@nd.edu Stuart Jones No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 41.7 -86.23 2444998146 5477058 1809 28 3162 60 SRX2576265 Unrestricted 0.0 Metagenome 3300037424 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_091317_139_150 DOE Joint Genome Institute (JGI) 3300037424 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2868977099 4323517 1096 17 1615 14 SRX9164495 Unrestricted 15.87 Metagenome 3300070962 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Agroecosystem, Kansas, USA - KONA_054-M-20170809-COMP-DNA1 3300070962 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Agricultural land Soil 6818589 21323 29 4 43 5 0.0 Metagenome 3300037859 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Scytonematopsis contorta HA4267-MV1 and co-occurring heterotrophs from mud from Palolo Valley Trail, Honolulu, Hawaii, United States - 20190126_51 DOE Joint Genome Institute (JGI) 3300037859 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Aquatic Pond Freshwater Sediment Mud 21.323 -157.772 17933673 18350 9 3 5 1 SRX9168444 Unrestricted 679.57 Metagenome 3300017563 *Microbiome Permanent Draft Bras del Port Dic 2016 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CR30 Dic 2016 University of Valencia 3300017563 Metagenome Analysis idba.1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Non-marine hypersaline water 38.1922 -0.5918 24845846 79848 4 0 0 0 0.0 Metagenome 3300012032 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #431 DOE Joint Genome Institute (JGI) 3300012032 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 256454164 409857 134 49 191 103 SRX3295552 Unrestricted 0.0 Metagenome 3300009688 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_STIC08_MetaG DOE Joint Genome Institute (JGI) 3300009688 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 41.84 -87.68 1031799623 1920373 709 2 1048 12 SRX2338906 Unrestricted 0.0 Metagenome 3300009407 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T10 (2) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2) Shell Corporation 3300009407 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 121673454 405028 161 1 315 2 0.0 Metagenome 3300013436 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100110 University of Pennsylvania 3300013436 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 7761000 15997 9 2 16 1 SRX756720 0.0 Metagenome 3300069211 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Great Basin, Onaqui, Utah, USA - ONAQ_003-M-20210527-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069211 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Shrubland Soil Unclassified Terrestrial soil 40.205921 -112.430276 1663864892 3996552 1455 23 2987 35 0.0 Metagenome 3300026766 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-D (SPAdes) DOE Joint Genome Institute (JGI) 3300026766 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 25781940 79948 81 1 135 5 SRX2575851 Unrestricted 0.0 Metagenome 3300011965 *Microbiome Permanent Draft Anaerobic sludge microbial communities from wastewater treatment plant in Hong Kong, China Anaerobic sludge microbial communities from wastewater treatment plant in Hong Kong, China - Thermophilic cellulolytic sludge University of Hong Kong 3300011965 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Unclassified Anaerobic digestor Unclassified Anaerobic thermophilic cellulolytic sludge 22.3 114.1 61968992 102081 38 0 59 0 SRX179287 0.0 Metagenome 3300011657 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00693 Weill Cornell Medical College 3300011657 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.82 -73.95 30438548 46881 18 0 21 0 SRX822660 0.0 Metagenome 3300013108 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 103m, 250-2.7um, replicate b Georgia Genomics Facility 3300013108 Metagenome Analysis IDBA 1.1.1 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 185900713 245972 159 83 213 115 0.0 Metagenome 3300011918 *Microbiome Permanent Draft Mine pit pond microbial communities from Vermont, USA Mine pit pond microbial communities from Vermont, USA - 2S University of Vermont 3300011918 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 27896068 Environmental Aquatic Alkaline Non-marine Saline and Alkaline Mine pit pond Mine pit pond 43.727094 -72.425964 60847604 110478 36 6 62 7 SRX1060170 0.0 Metagenome 3300022741 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant dump, University of Wisconsin, Madison, United States - 3A1A DOE Joint Genome Institute (JGI) 3300022741 Metagenome Analysis spades v. 3.11.1-check Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0758 -89.4125 189040556 273479 135 6 187 2 SRX4663557 Unrestricted 34.17 Metagenome 3300034683 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from deep shales in Oklahoma, United States - K-7-3 DOE Joint Genome Institute (JGI) 3300034683 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back fracking water 35.812 -98.262 389110958 621204 413 2 524 8 SRX8136094 Unrestricted 139.08 Metagenome 3300021574 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA Downsampled Assembly University of Michigan 3300021574 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7635 -83.3309 8.835 31118139 56331 71 15 93 14 0.0 Metagenome 3300002305 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 03OCT2011 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002305 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 46463073 116098 67 16 114 32 SRX1989663 Unrestricted 0.0 Metagenome 3300042813 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115 NMDC pilot DOE Joint Genome Institute (JGI) 3300042813 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.91721605 -106.9559947 658819448 1741713 648 20 1243 32 SRX5354613 0.0 Metagenome 3300045508 *Microbiome Permanent Draft Florida Reef Tract Coral Disease Outbreak Coral surface microbial communities from Montastraea cavernosa, offshore reef, Ft. Lauderdale, FL, USA - McAI -2 University of Florida 3300045508 Metagenome Analysis MEGAHIT v. 1.1.4 released per PI No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified coral surface 26.16 -80.1 420488768 635357 6 9 13 15 0.0 Metagenome 3300064943 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 746 in Carstairs, Alberta, Canada - S00JY_0004 Microbiome Insights 3300064943 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.29325538 -114.0540409 58860454 89274 46 3 95 4 0.0 Metagenome 3300040569 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_002-M-20131112-COMP-DNA1 Argonne National Laboratory 3300040569 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 2248076 6787 25 3 37 11 0.0 Metagenome 7000000735 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 763759525 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000735 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 96360436 142222 0 0 0 0 0.0 Metagenome 3300026085 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026085 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 251137816 601965 201 7 363 11 SRX2776894 Unrestricted 0.0 Metagenome 3300057024 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F2L_30_32 DOE Joint Genome Institute (JGI) 3300057024 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9762234 -81.70738203 1925153232 2965829 768 3 1226 2 Unrestricted 13.52 Metagenome 2140918002 *Microbiome Permanent Draft Rhizosphere and bulk soil microbial communities from the Great Lakes Rhizosphere and bulk soil microbial communities from the Great Lakes - Sample MSB1 DOE Joint Genome Institute (JGI) 2140918002 Metagenome Analysis Released upon Christa's approval No Yes garoutte@msu.edu Aaron Garoutte No Environmental Terrestrial Unclassified Soil Unclassified Rhizosphere and bulk soil 44.0647 -85.3817 9701071 15835 8 0 18 0 0.0 Metagenome 3300005693 *Microbiome Finished Mouse gut microbial communities from Washington University in St Louis, Missouri, USA, of lean and obese mice Mouse gut microbial communities from Washington University in St Louis, Missouri, USA - Lean Mouse 2 Gut Metagenome Washington University in St. Louis 3300005693 Metagenome Analysis Newbler No Yes jgordon@wustl.edu Human Gut Community Users Yes 17183312 Host-associated Mammals Large intestine Digestive system Cecum Mouse gut 38.63055 -90.194664 2133081 4173 0 0 0 0 0.0 Metagenome 3300033415 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from Middle Island sinkhole, Lake Huron, Michigan, United States - MIS.2016.062E DOE Joint Genome Institute (JGI) 3300033415 Metagenome Analysis spades v. 3.13.0 Yes Yes macgregb@umn.edu; sgrim@umich.edu Barbara MacGregor; Sharon Grim No Environmental Aquatic Lake Freshwater Sediment microbial mat 45.1993 -83.3279 221930935 445946 132 16 209 21 SRX7582701 Unrestricted 27.1 Metagenome 3300056842 *Microbiome Permanent Draft Mealworm larvae gut microbial communities from Newark, Delaware, USA Mealworm larvae gut microbial communities from Newark, Delaware, USA - Gut-D30_HDPE_oats (version 2) DOE Joint Genome Institute (JGI) 3300056842 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes blenner@udel.edu Mark Blenner No Host-associated Arthropoda: Insects Gut Larva Unclassified Mealworm larvae gut 39.663708 -75.755838 202379799 199102 244 11 275 6 Unrestricted 58.48 Metagenome 3300061537 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from National Grasslands LBJ, Texas, USA - CLBJ_003-M-20210506-comp-1 DOE Joint Genome Institute (JGI) 3300061537 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Grasslands Soil Unclassified Terrestrial soil 33.40399 -97.57274 3130961773 5094398 937 50 1569 90 Unrestricted 13.65 Metagenome 3300028361 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #498 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028361 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 91765589 177262 58 8 67 9 SRX3296045 Unrestricted 0.0 Metagenome 3300047490 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lake Yojoa, Honduras - Yojoa_06_2019_L_epi (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047490 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Lake Freshwater Unclassified Freshwater 14.8869 -88.0258 508132576 906387 286 49 476 71 Unrestricted 0.0 Metagenome 3300038721 *Microbiome Permanent Draft Metagenomes from benzene-degrading nitrate-reducing cultures Lab enriched sediment microbial communities from hydrocarbon-contaminated retail site, Toronto, Canada - FeSDial Beijing Genomics Institute (BGI) 3300038721 Metagenome Analysis idba-ud v. 1.1.1 Yes Yes elizabeth.edwards@utoronto.ca; camillaln@gmail.com Elizabeth A. Edwards; Camilla Nesb? No Engineered Lab enrichment Anaerobic media Defined media Unclassified sediment 43.654 -79.3872 71749162 81355 25 1 33 1 0.0 Metagenome 3300038354 *Microbiome Permanent Draft Ice-cream associated microbial communities from Maryland, United States Ice-cream associated microbial communities from Maryland, United States - 16_R2 U.S. Food and Drug Administration 3300038354 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Ice-cream associated 38.98 -76.93 2302539 5373 29 0 48 0 0.0 Metagenome 3300002938 *Microbiome Permanent Draft Cephalotes varians microbial communities from the Florida Keys, USA Larval gut metagenome for colony PL005 Harvard University 3300002938 Metagenome Analysis released per JGI data release policy Yes Yes pl356@drexel.edu, yihu.bnu@gmail.com Piotr Lukasik, Yi Hu No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Cephalotes varians 24.6333167 -81.3617833 331374827 484648 50 7 95 21 0.0 Metagenome 3300046503 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvCe-C(1) 20-24 DOE Joint Genome Institute (JGI) 3300046503 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0434 276696823 442827 139 0 223 0 Restricted 12.31 Metagenome 3300039180 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ellis Fjord site 2, Antarctica - #248 Australian Centre for Ecogenomics 3300039180 Metagenome Analysis Spades v. 3.12.0 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified saline water -68.595979 78.191062 908736180 1997749 349 157 561 278 0.0 Metagenome 3300044823 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Soil microbial communities from peatland in Alberta, Canada - SB-12-nonsedgy 40-50 cm DOE Joint Genome Institute (JGI) 3300044823 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4549 -114.8842 549213391 757714 143 1 219 2 Unrestricted 30.5 Metagenome 3300050277 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_33 DOE Joint Genome Institute (JGI) 3300050277 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.492 160.907 436512624 739651 145 21 219 45 SRX18235977 Restricted 34.91 Metagenome 3300029703 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36117 Beijing Genomics Institute (BGI) 3300029703 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 189169074 238138 145 0 220 0 0.0 Metagenome 3300001012 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY76 J. Craig Venter Institute (JCVI) 3300001012 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 747106004 3238012 60 89 270 160 0.0 Metagenome 3300045791 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - P3-R1-B DOE Joint Genome Institute (JGI) 3300045791 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.0477 356092904 726443 156 9 240 7 Unrestricted 8.51 Metagenome 3300025581 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 210-3 deep-072012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025581 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 291770981 600506 164 7 290 11 SRX1987244 Unrestricted 0.0 Metagenome 3300018030 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100 DOE Joint Genome Institute (JGI) 3300018030 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 1051637128 2024000 583 30 1148 61 SRX3960107 Unrestricted 10.01 Metagenome 3300042336 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME10Feb2009D2-rr0600 DOE Joint Genome Institute (JGI) 3300042336 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 719665560 1116261 240 18 315 33 Unrestricted 21.23 Metagenome 3300039004 *Microbiome Permanent Draft Beach sand microbial communities from Municipal Pensacola Beach, Florida Beach sand microbial communities from Municipal Pensacola Beach, Florida - OS-F Georgia Institute of Technology 3300039004 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Sand Soil Unclassified Beach sand 30.3262 -87.1745 19311412 43690 10 1 29 0 SRX696247 0.0 Metagenome 3300029095 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 181_M Beijing Genomics Institute (BGI) 3300029095 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 155347311 216623 133 0 214 0 ERX490981 0.0 Metagenome 3300015213 *Microbiome Permanent Draft Microbial mat communities from high arctic lakes Freshwater microbial mat microbial communities from Canadian High Arctic Lake, Ward Hunt Island, Canada - Sample WHc Laval University 3300015213 Metagenome Analysis IDBA_UD released by Adrien Vigneron No Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified microbial mat 83.079722 -74.138056 867187793 3585381 861 158 1685 304 0.0 Metagenome 3300035132 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0606S12 DOE Joint Genome Institute (JGI) 3300035132 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8959 -97.0388 490710189 1199891 475 3 790 8 SRX8256182 Unrestricted 6.22 Metagenome 3300000493 *Microbiome Permanent Draft Lentic microbial communities from White Lake grasslands, BC, Canada Lentic microbial communities from White Lake grasslands, BC, Canada Pennsylvania State University 3300000493 Metagenome Analysis released per PI No Yes tlh42@psu.edu Trinity No Environmental Aquatic Lentic Freshwater Unclassified Lentic 49.2833 -119.5833 15666388 51832 40 0 77 0 0.0 Metagenome 3300005146 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgHAB DOE Joint Genome Institute (JGI) 3300005146 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 185836321 640512 404 10 770 22 SRX2521233 Unrestricted 0.0 Metagenome 3300027604 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027604 Metagenome Analysis spades v. 3.11.1 Yes Yes loy@microbial-ecology.net; Michael.Pester@dsmz.de Alexander Loy; Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.1318 11.881 394066394 793962 139 3 233 7 Unrestricted 0.0 Metagenome 3300041523 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Bulk soil microbial community from Lincoln, Canterbury, New Zealand - BS18_7 MetaG AgResearch, New Zealand, Mosgeil 3300041523 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Environmental Terrestrial Unclassified Soil Agricultural land Dairy farm pasture soil -43.648506 172.343549 1291566436 3072532 310 33 1137 59 0.0 Metagenome 3300026173 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_C_D2_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026173 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4971 -122.133 304658806 599148 354 4 520 6 SRX2753765 Unrestricted 0.0 Metagenome 3300043610 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 131-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043610 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9373 -107.0128 632073436 1385754 316 17 487 28 Unrestricted 8.51 Metagenome 3300032134 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Pacific Ocean, United States - ASW #17 DOE Joint Genome Institute (JGI) 3300032134 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Oceanic Marine Unclassified seawater 36.1202 -123.4856 529035612 953721 296 2 438 2 SRX6424016 Unrestricted 78.96 Metagenome 3300044266 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Ubangi River, Likouala, Congo - CONGO_031 DOE Joint Genome Institute (JGI) 3300044266 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 2.0589 18.0605 354173694 930892 308 20 507 44 Unrestricted 8.68 Metagenome 3300000274 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM173 Beijing Genomics Institute (BGI), Macrogen 3300000274 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 69907805 123381 177 1 290 2 0.0 Metagenome 3300071056 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_007-M-20190109-COMP-DNA1 3300071056 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 118954724 330722 163 14 278 34 0.0 Metagenome 3300020125 *Microbiome Permanent Draft Soil bacterial communities from Switchgrass agricultural field in Lux Arbor, Michigan, USA Soil bacterial communities from Switchgrass agricultural field in Lux Arbor, Michigan, USA - site U3, unfertilized Michigan State University 3300020125 Metagenome Analysis Megahit released by JGI data releasing policy Yes Yes aarongaroutte@gmail.com Aaron J. Garoutte No Environmental Terrestrial Unclassified Soil Agricultural land Soil 42.4891 -85.4641 5663553993 9403190 1353 50 2068 95 0.0 Metagenome 3300008281 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160218816 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008281 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 149476067 220086 120 2 136 3 0.0 Metagenome 3300042144 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624F_E14_070516_89 DOE Joint Genome Institute (JGI) 3300042144 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.1836 -97.9974 114864963 310047 208 8 381 11 Unrestricted 7.26 Metagenome 3300003755 *Microbiome Permanent Draft Cyanobacterial communities from the Joint Genome Institute, California, USA Cyanobacterial communities from the Joint Genome Institute, California, USA - FECB-27 DOE Joint Genome Institute (JGI) 3300003755 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes mhess@lbl.gov, mhess@ucdavis.edu Matthias Hess No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Cyanobacterial 37.9313884 -122.0239394 104231309 146890 77 0 101 0 SRX7698020 Unrestricted 0.0 Metagenome 3300065657 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 828b in Grassy Lake, Alberta, Canada - S00JY_0259 Microbiome Insights 3300065657 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.425784 -111.460018 144779585 211984 71 0 115 0 0.0 Metagenome 3300026354 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-B DOE Joint Genome Institute (JGI) 3300026354 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 141051170 367434 216 17 403 17 SRX4804097 Unrestricted 9.26 Metagenome 3300045142 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - CSC2D DOE Joint Genome Institute (JGI) 3300045142 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 1467858003 2501348 577 44 968 56 Unrestricted 13.52 Metagenome 3300036361 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C2-7C DOE Joint Genome Institute (JGI) 3300036361 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 41771560 137122 135 4 240 7 SRX8816844 Unrestricted 4.02 Metagenome 3300026721 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN395 (SPAdes) DOE Joint Genome Institute (JGI) 3300026721 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Soil 44.20517707 -122.1284473 18950396 58323 70 2 99 4 SRX1986910 Unrestricted 0.0 Metagenome 3300024491 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Colum_RepB_8h DOE Joint Genome Institute (JGI) 3300024491 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 104333685 232353 103 4 182 12 SRX4547480 Unrestricted 15.18 Metagenome 3300002332 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP08-I4 3300002332 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300024988 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_inoc_plan (SPAdes) DOE Joint Genome Institute (JGI) 3300024988 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioremediation Unclassified Thiocyanate Unclassified Wastewater bioreactor -33.936637 18.478905 341047186 437514 182 22 216 22 SRX2576692 Unrestricted 0.0 Metagenome 3300004775 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA17M DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300004775 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tmcmahon@engr.wisc.edu, tmcmahon@engr.wisc.edu; shaomei.he@gmail.com Katherine McMahon, Katherine McMahon; Shaomei He No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 433056998 1183654 670 5 1251 17 SRX2565126 Unrestricted 0.0 Metagenome 3300007524 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 763496533 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007524 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 183776594 274592 151 0 251 0 0.0 Metagenome 7000000702 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 158944319 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000702 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 2299357 2806 0 0 0 0 0.0 Metagenome 3300041016 *Microbiome Permanent Draft Freshwater viral communities from Lake Baikal, Russia Freshwater viral communities from Lake Baikal, Russia - BVP1 ICBFM SB RAS 3300041016 Metagenome Analysis SPAdes v. 1.0.3 released by Sergey Potapov No Yes poet1988@list.ru Sergey Potapov No Environmental Aquatic Lake Freshwater Unclassified Freshwater 51.821262 104.881055 127675531 277426 11 1 25 1 0.0 Metagenome 3300005334 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 DOE Joint Genome Institute (JGI) 3300005334 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 4919748215 13476518 3306 216 5361 428 SRX2832622 Unrestricted 0.0 Metagenome 3300070769 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_006-O-20180718-COMP-DNA1 3300070769 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 12108921 38766 55 4 89 13 0.0 Metagenome 3300013542 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100769 University of Pennsylvania 3300013542 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 233813 684 2 2 5 7 SRX756059 0.0 Metagenome 3300000298 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM350 Beijing Genomics Institute (BGI), Macrogen 3300000298 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 85418553 115129 251 0 367 0 0.0 Metagenome 3300008152 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160582958 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008152 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 217475209 345070 237 1 281 5 0.0 Metagenome 3300049521 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_B_7_drought DOE Joint Genome Institute (JGI) 3300049521 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 311681442 747945 540 26 1014 45 Unrestricted 13.09 Metagenome 3300001270 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY91 J. Craig Venter Institute (JCVI) 3300001270 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 1438004797 6631114 199 141 587 186 0.0 Metagenome 3300035059 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - C12-7 Autonomous University of Barcelona 3300035059 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 77563569 319830 676 1 1302 0 0.0 Metagenome 3300028190 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_1000m DOE Joint Genome Institute (JGI) 3300028190 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified marine 50.0 -145.0 438081282 1009317 296 63 491 83 SRX5244195 Unrestricted 20.79 Metagenome 3300033826 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 E2 1-5 DOE Joint Genome Institute (JGI) 3300033826 Metagenome Analysis spades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0466 151946345 444900 237 10 420 15 SRX8138421, SRX8138420 Unrestricted 0.0 Metagenome 3300070787 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_032-O-20190109-COMP-DNA1 3300070787 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 91096946 255589 149 14 265 14 0.0 Metagenome 3300019135 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - midlate stage, 18 hrs after wetting v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300019135 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 283011187 578000 303 15 547 31 0.0 Metagenome 3300001345 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Nasutitermes corniger P4 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P4 DOE Joint Genome Institute (JGI) 3300001345 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,, Yes Yes brune@mpi-marburg.mpg.de Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 26.0625 -80.2332 233172558 678102 146 6 216 7 SRX2553512, SRX2553511 0.0 Metagenome 3300059749 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1552A-3 (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059749 Metagenome Analysis MEGAHIT v. 1.0.6 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.1869 -123.8842 221774772 491864 406 142 723 231 SRX2523444 Unrestricted 0.0 Metagenome 3300012793 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched chicken feces microbial communities from UW Madison campus, WI, USA - DID2874_E49 MG DOE Joint Genome Institute (JGI) 3300012793 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Birds Large intestine Digestive system Fecal feces 43.073 -89.4011 30589734 44961 75 2 146 4 SRX3565012 Unrestricted 0.0 Metagenome 3300027456 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE17-E (SPAdes) DOE Joint Genome Institute (JGI) 3300027456 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.32 21456184 65211 92 11 160 12 SRX1991446 Unrestricted 0.0 Metagenome 3300060457 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210606_10_17 DOE Joint Genome Institute (JGI) 3300060457 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 1459454657 2100806 444 357 579 422 Unrestricted 33.23 Metagenome 3300042211 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D94_2 DOE Joint Genome Institute (JGI) 3300042211 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 166488712 245422 121 6 170 17 Unrestricted 70.68 Metagenome 3300012005 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A15_80cm_0M University of Tennessee 3300012005 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 388366379 750330 146 9 239 14 SRX710561 0.0 Metagenome 3300024898 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 98_LOW12 (SPAdes) DOE Joint Genome Institute (JGI) 3300024898 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 16199674 23398 10 2 8 3 SRX2721173 Unrestricted 0.0 Metagenome 3300043686 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - Rondonia_Pasture_1_A10m DOE Joint Genome Institute (JGI) 3300043686 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.163 -62.836 416273671 1196945 391 9 721 19 Unrestricted 7.08 Metagenome 3300003515 *Microbiome Permanent Draft Estuarine microbial communities from Mobile Bay, Alabama Estuarine microbial communities from Mobile Bay, Alabama - Sample Sm Auburn University 3300003515 Metagenome Analysis released per JGI data release policy No Yes rmm0025@auburn.edu, rmm0025@auburn.edu; mariitarichard@gmail.com Richard M. Mariita, Richard M. Mariita; Richard Mariita No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 30.4464641 -87.9922684 34841000 181861 131 18 301 22 0.0 Metagenome 3300021077 *Microbiome Permanent Draft Peat bog microbial communities from Stordalen Mire, Abisko, Sweden Fen microbial communities from Stordalen Mire, Abisko, Sweden - Day 50 Australian Centre for Ecogenomics 3300021077 Metagenome Analysis metaSPAdes released by JGI data releasing policy No Yes rich.270@osu.edu Virginia Rich No Environmental Terrestrial Peat Soil Fen fen 68.3531685 19.0467201 1293867015 3603589 310 19 782 29 0.0 Metagenome 3300013784 *Microbiome Permanent Draft Marine Prochlorococcus and Synechococcus communites from Sargasso sea and California currents Marine microbial communites from Sargasso Sea - Prochlorococcus B258 surface rep 2 UCI 3300013784 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 4862441 14558 14 0 27 0 SRX379261 0.0 Metagenome 3300014248 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 214_D1_2014-6-16 San Diego State University 3300014248 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 3344558 8903 10 4 17 10 0.0 Metagenome 3300053760 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 261-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300053760 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.979984 -107.040429 243527762 713283 582 56 1040 76 Unrestricted 0.0 Metagenome 3300012159 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT500_2 DOE Joint Genome Institute (JGI) 3300012159 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9234 -106.9514 174553917 414244 230 20 479 33 SRX3368877 Unrestricted 0.0 Metagenome 3300044901 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R DOE Joint Genome Institute (JGI) 3300044901 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 14.75 -16.85 971030173 1731917 458 52 757 51 Unrestricted 19.77 Metagenome 3300061213 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from National Grasslands LBJ, Texas, USA - CLBJ_033-M-20210505-comp-1 DOE Joint Genome Institute (JGI) 3300061213 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Grasslands Soil Unclassified Terrestrial soil 33.38097 -97.62021 3067363352 4810655 844 34 1272 59 Unrestricted 17.51 Metagenome 3300070368 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dead Lake, Alabama, USA - DELA_041-M-20190626-COMP-DNA1 3300070368 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 4091097 13143 38 4 56 4 0.0 Metagenome 3300056677 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.2W.12 SIP fraction DOE Joint Genome Institute (JGI) 3300056677 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 187702718 314391 160 21 233 45 Unrestricted 13.51 Metagenome 3300069336 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_001-O-20131122-COMP-DNA1 re-annotation Argonne National Laboratory 3300069336 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 720057 2273 25 7 39 15 ERX2133985 0.0 Metagenome 3300030119 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine giant viral communities collected during Tara Oceans survey from station TARA_124 - TARA_Y100001933 CEA Genoscope 3300030119 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -9.1504 -140.5216 1069584632 2221897 559 9 846 20 0.0 Metagenome 3300044697 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Soil microbial communities from peatland in Alberta, Canada - SB-U-VEG 0-10 cm DOE Joint Genome Institute (JGI) 3300044697 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4621 -114.8803 1000633940 1531645 314 13 497 26 Unrestricted 12.33 Metagenome 3300005827 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.188_CBA Oregon Health and Science University (OHSU) 3300005827 Metagenome Analysis unassembled released per JGI data release policy No Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Unclassified Sediment Unclassified sediment (intertidal) 46.186944 -123.686944 639554316 1368222 1200 136 2350 222 0.0 Metagenome 3300007311 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 2, subject 159591683 replicate 2 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007311 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 17652442 24136 9 3 14 7 SRX024629, SRX024630 0.0 Metagenome 3300025194 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP1494 (SPAdes) DOE Joint Genome Institute (JGI) 3300025194 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -25.49 -179.52 49107993 113653 76 0 112 1 SRX1982422 Unrestricted 0.0 Metagenome 3300035105 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B5.4_Sample5.Rodeo4.Well1132 DOE Joint Genome Institute (JGI) 3300035105 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 306062528 502541 229 0 423 0 SRX8354344 Unrestricted 33.07 Metagenome 3300002150 *Microbiome Permanent Draft Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran, Adriatic Sea Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge mesohyl, lysed by bead beating DOE Joint Genome Institute (JGI) 3300002150 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes ute.hentschel@uni-wuerzburg.de Ute Hentschel Humeida No Host-associated Porifera Unclassified Sponge Unclassified Host-associated 45.5099 13.56 214938064 394414 172 3 266 9 SRX4919420 Unrestricted 0.0 Metagenome 3300040100 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 082_R1_022417 University of Maryland 3300040100 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.68044444 27.08186111 12282421 25287 32 1 56 0 0.0 Metagenome 3300044221 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T60 S DOE Joint Genome Institute (JGI) 3300044221 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7203 -64.3136 309923033 772452 17 0 19 0 Unrestricted 74.96 Metagenome 3300007103 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila putrida female 4 gut Cornell University 3300007103 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy Yes Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila putrida female adult gut 43.025606 -77.572811 88011474 255482 42 4 71 6 0.0 Metagenome 3300019879 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - H2m2 DOE Joint Genome Institute (JGI) 3300019879 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.987 -107.0038 370428974 774136 255 12 488 18 SRX3948144, SRX3948143 Unrestricted 0.0 Metagenome 3300049314 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA29 DOE Joint Genome Institute (JGI) 3300049314 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 327460009 884520 383 7 650 12 Unrestricted 6.9 Metagenome 3300008330 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159268001 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008330 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 71662712 147633 55 0 101 1 0.0 Metagenome 3300021598 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA Downsampled Assembly University of Michigan 3300021598 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.8271 -83.1945 9.128 391628507 739817 379 110 525 147 0.0 Metagenome 3300041788 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - TR_37_wk_2 DOE Joint Genome Institute (JGI) 3300041788 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9999 -107.084 105775702 303966 177 3 330 6 SRX14808344 Unrestricted 6.46 Metagenome 3300020570 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020570 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 118920165 283329 117 7 200 13 SRX3310951 Unrestricted 0.0 Metagenome 3300028326 *Microbiome Permanent Draft Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA - Biofuel metagenome 5 (SPAdes) (version 4) DOE Joint Genome Institute (JGI) 3300028326 Metagenome Analysis spades v. 3.11.1 Yes Yes hrbeller@lbl.gov Harry Beller Yes 29556105 Engineered Bioreactor Unclassified Anaerobic Unclassified Bioreactor 37.8754404 -122.2477251 272182019 372141 188 0 226 0 SRX2553648 Unrestricted 0.0 Metagenome 3300038766 *Microbiome Permanent Draft Beach sand microbial communities from Municipal Pensacola Beach, Florida Beach sand microbial communities from Municipal Pensacola Beach, Florida - OS-H Georgia Institute of Technology 3300038766 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Sand Soil Unclassified Beach sand 30.3262 -87.1745 12579353 31798 12 0 27 0 SRX696249 0.0 Metagenome 3300043137 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Shale gas microbial communities from Fort St. John, British Columbia, Canada - UGR 46 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043137 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back shale gas 56.0 -122.0 235229655 469642 179 32 225 45 SRX8356778 Unrestricted 34.72 Metagenome 3300009870 *Microbiome Permanent Draft Activated sludge microbial community analysis in wastewater treatment plant from Tai Wan Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plant Beijing Novogene Bioinformatics Technology Co., Ltd 3300009870 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes limeng848@gmail.com MENG LI No Engineered WWTP Unclassified Activated sludge Unclassified activated sludge 25.0 121.0 2733908587 4207652 1496 77 2344 129 0.0 Metagenome 3300039116 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog55 BILS 3300039116 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 2928601 7202 6 0 8 0 ERX1594877 0.0 Metagenome 3300055459 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.4W.10 SIP fraction DOE Joint Genome Institute (JGI) 3300055459 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 108254775 211025 100 4 184 2 Unrestricted 11.47 Metagenome 3300040084 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_005-M-20140325-COMP-DNA1 Argonne National Laboratory 3300040084 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 13062738 32631 38 2 77 4 ERX2134052 0.0 Metagenome 3300045887 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Geyser Creek, Yellowstone National Park, WY, United States - MSUNE_GC_01 University of Wisconsin, Madison 3300045887 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.68753 -110.72752 202020285 335363 139 9 164 4 0.0 Metagenome 3300036382 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T25 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036382 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 153024668 238659 80 7 90 12 SRX8128126, SRX8128125 Unrestricted 0.0 Metagenome 3300011643 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00337 Weill Cornell Medical College 3300011643 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -74.01 28408342 44213 19 0 25 0 SRX822310 0.0 Metagenome 3300022316 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL3WBGP2 JM104 AGRF 3300022316 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996531 115.533257 36525559 64396 29 0 37 0 0.0 Metagenome 3300033398 *Microbiome Permanent Draft Metagenomic SGS 2x251 Riparian soil bacterial communities from Cottonwood Creek Park, Encinitas, CA, USA - R9 Illumina 3300033398 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Riparian soil Soil 33.051604 -117.289363 791498767 1983092 692 26 889 36 0.0 Metagenome 3300034085 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B3A4.3 DOE Joint Genome Institute (JGI) 3300034085 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 331436660 900140 599 0 1026 1 SRX7658948 Unrestricted 6.74 Metagenome 3300050027 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 S3 10-14 DOE Joint Genome Institute (JGI) 3300050027 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.353292 19.0475 575180801 771969 132 3 207 7 Restricted 20.61 Metagenome 3300025407 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE24Aug09 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025407 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 160598501 327543 86 31 141 58 SRX2565125 Unrestricted 0.0 Metagenome 3300004281 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio DOE Joint Genome Institute (JGI) 3300004281 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes sgtringe@lbl.gov, cpan@ou.edu Susannah Tringe, Chongle Pan No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 9.1086 -79.8436 656908634 2157267 394 19 983 32 SRX2779535 Unrestricted 0.0 Metagenome 3300025688 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI073_LV_100m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025688 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 447630184 882202 309 8 463 15 Unrestricted 0.0 Metagenome 3300008262 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-C-NA University of Michigan 3300008262 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7635 -83.3309 9.195 763678796 1260309 479 111 707 186 0.0 Metagenome 3300022067 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v3) (version 3) DOE Joint Genome Institute (JGI) 3300022067 Metagenome Analysis spades v. 3.11.1-check Yes Yes chenf@umces.edu; bcampb7@clemson.edu Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.130153 -75.249887 101090943 289077 23 0 37 0 SRX2745131, SRX3785818, SRX3785817 Unrestricted 0.0 Metagenome 3300003626 *Microbiome Permanent Draft Hypersaline viral and bacterial communities from Bras del Port, Santa Pola, Spain Hypersaline viral communities from Bras del Port, Santa Pola, Spain - CR30 Febrero14 Julio y septiembre juntos precorrection Lifesequencing S.L. 3300003626 Metagenome Analysis released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline samples 38.192206 -0.591865 2025347 5953 14 0 0 0 0.0 Metagenome 3300028988 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 268_B Beijing Genomics Institute (BGI) 3300028988 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 39405173 49147 32 0 38 0 ERX491047 0.0 Metagenome 3300028491 *Microbiome Permanent Draft Kombucha Microbiome analysis Kombucha tea microbial communities from Tempe, Arizona, USA - Komliq re-analysis Macrogen Inc 3300028491 Metagenome Analysis Spades v. 3.12.0 released by JGI data releasing policy No Yes nshrinath1994@gmail.com Shrinath Narayanan No Engineered Food production Unclassified Fermented beverages Unclassified Kombucha tea 33.4255 -111.94 38405584 32824 4 10 7 8 0.0 Metagenome 3300047360 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_190206.NP1 DOE Joint Genome Institute (JGI) 3300047360 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 671966488 1387260 447 90 772 141 Unrestricted 10.35 Metagenome 3300014738 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01373 Weill Cornell Medical College 3300014738 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.64 -74.01 35370361 58388 18 0 24 0 SRX823313 0.0 Metagenome 3300000363 *Microbiome Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil v5 (version 5) DOE Joint Genome Institute (JGI) 3300000363 Metagenome Analysis Artifact filter, partition at k=32, assemble with Velvet at k19-45, Minimus2 released based on JGI ITS Yes Yes janet.jansson@pnnl.gov Janet Jansson Yes 30158906 Environmental Terrestrial Unclassified Soil Grasslands Soil 39.0042816 -77.1012173 2545560584 6496175 39 12 205 39 Unrestricted 0.0 Metagenome 3300000024 *Microbiome Draft Shipworm microbial communities from Puget Sound, Washington USA, from multiple species of wood-boring bivalves (shipworms) Microbial communities from multiple species of Shipworm: Sample from Bankia setacea gill BSg3 v1 DOE Joint Genome Institute (JGI) 3300000024 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS No Yes distel@oglf.org Daniel Distel, Dan Distel No Host-associated Mollusca Gills Respiratory system Extracellular Shipworm 47.957498 -122.529373 620222960 1371184 12 22 18 4 Unrestricted 0.0 Metagenome 3300013477 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - sediment SCG91 University of British Columbia 3300013477 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Sediment Marine 438757 1280 0 0 6 0 SRX143200 0.0 Metagenome 3300039392 *Microbiome Permanent Draft Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada - low-flow bush ECw11 Dalhousie University 3300039392 Metagenome Analysis Megahit v. 1.2.8 released by JGI data releasing policy No Yes smurdock@uvic.ca Sheryl Murdock No Environmental Aquatic Hydrothermal vents Marine Tubeworm bush tubeworm bush 47.9631 -129.0917 558078862 1145764 438 26 691 55 0.0 Metagenome 3300039974 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Taiga, AK, USA - HEAL_048-O-20160725-COMP-DNA1 Battelle Memorial Institute 3300039974 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.87569 -149.21334 19293895 50443 29 1 63 0 0.0 Metagenome 3300045869 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from the Norris Geyser Basin, Yellowstone National Park, WY, United States - MSUNE_N_06 University of Wisconsin, Madison 3300045869 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.73616 -110.70649 44579281 69943 28 1 32 0 0.0 Metagenome 3300034173 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 21HNC DOE Joint Genome Institute (JGI) 3300034173 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological hypolithic biocrust 34.7856 -115.66 349055937 827876 611 34 1088 50 SRX7615824 Unrestricted 8.79 Metagenome 3300002858 *Microbiome Permanent Draft Cyanobacterial communities from University of California, Berkeley, USA Cyanobacterial communities from University of California, Berkeley, USA - Mastigocoleus testarum BC008 + Unknown organism coculture DOE Joint Genome Institute (JGI) 3300002858 Metagenome Analysis manual release request from Christa No Yes ckerfeld@lbl.gov Cheryl Kerfeld No Engineered Lab enrichment Unclassified Unclassified Unclassified Cyanobacterial 37.873811 -122.250622 15867137 14823 5 0 5 0 0.0 Metagenome 3300040808 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Estuary water microbial communities from Narragansett Bay, Rhode Island, USA - E2_negO2CPA DOE Joint Genome Institute (JGI) 3300040808 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.9078 -71.5683 547255077 857240 250 19 322 27 SRX9641300 Unrestricted 18.53 Metagenome 3300011196 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 17 - S13.2.60.2.a - transect 2, repeat 2, age 113 years, surface depth) University of Bristol 3300011196 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes EAEloeFadrosh@lbl.gov; maisie.nash@bristol.ac.uk; ama@envs.au.dk Emiley Eloe-Fadrosh; Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 78.99166667 12.23 7.5 16687388 30054 30 3 73 3 0.0 Metagenome 3300007277 *Microbiome Permanent Draft Microbial Dechlorination and Chlorine Cycle Microbial dechlorinating community enriched from a non-contaminated site (Hamburg, Germany ) Microbial dechlorinating community by SSPACE (Hamburg, Germany ) University of Tennessee 3300007277 Metagenome Analysis SSPACE released per JGI data release policy No Yes yiyang@utk.edu, yiyang@uga.edu YI Yang No Environmental Terrestrial Unclassified Soil Unclassified soil 53.5653 10.0014 58871378 145926 49 0 116 0 0.0 Metagenome 3300001728 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-46 DOE Joint Genome Institute (JGI) 3300001728 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 49.9991 -144.9989 58390210 132119 25 0 54 0 Unrestricted 0.0 Metagenome 3300020607 *Microbiome Permanent Draft Marine microbial communities from Tor Caldara Marine established microbial mat bacterial communities from Tor Caldara shallow water vent, Tyrrhenian Sea, Italy - TCM5 re-assembly(spades) Molecular Research LP (MR DNA) 3300020607 Metagenome Analysis SPADES released by JGI data releasing policy No Yes sushmita.patwardhan@gmail.com Sushmita Patwardhan No Environmental Aquatic Hydrothermal vents Marine Microbial mats Marine microbial mat 41.48583333 12.58972222 117211026 190477 180 6 210 13 0.0 Metagenome 3300020488 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 17OCT2008 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020488 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 39893704 87709 55 17 74 15 SRX3310668 Unrestricted 0.0 Metagenome 3300003172 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Maryland, USA - DAQMD-018 DOE Joint Genome Institute (JGI) 3300003172 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 21168217 45028 45 13 39 36 SRX2770398 Unrestricted 0.0 Metagenome 3300070474 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_026-M-20180710-COMP-DNA1 Battelle Memorial Institute 3300070474 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 29.693584 -81.992056 5.21-5.56 24417988 76376 88 16 150 27 0.0 Metagenome 3300027794 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 6/11/14 C2 DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027794 Metagenome Analysis spades v. 3.11.1 Yes Yes ebyoung@uwm.edu Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 906981758 1824754 552 150 824 204 SRX2747780 Unrestricted 0.0 Metagenome 3300048901 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Soil microbial communities from greenhouse in W.K. Kellogg Biological Station, Michigan, USA - KLW soil_6a N15 DOE Joint Genome Institute (JGI) 3300048901 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Environmental Terrestrial Unclassified Soil Unclassified Soil 42.40581 -85.40228 1592772442 2685862 547 20 875 34 Unrestricted 13.56 Metagenome 3300037705 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_072517_120_130_jgi DOE Joint Genome Institute (JGI) 3300037705 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2408038077 3741109 954 10 1569 14 SRX9162993 Unrestricted 13.3 Metagenome 2004247009 *Microbiome Permanent Draft Hypersaline mat microbial communities from Guerrero Negro, Baja California Sur, Mexico Hypersaline mat microbial communities from Guerrero Negro, Mexico - 34-49 mm depth into microbial mat DOE Joint Genome Institute (JGI) 2004247009 Metagenome Analysis No Yes nrpace@colorado.edu Pace, Norman Yes 18523433 Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Microbial mats Hypersaline mat 27.68908 -113.917 6-9 7240715 12094 2 0 1 0 0.0 Metagenome 3300037093 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 S3 10-14 DOE Joint Genome Institute (JGI) 3300037093 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3531 19.0476 973591225 1675305 321 11 486 20 SRX8138171 Unrestricted 14.57 Metagenome 3300070293 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Florida, USA - DSNY_044-M-20180820-COMP-DNA1 3300070293 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 25591151 72099 69 4 120 5 0.0 Metagenome 7000000079 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 160218816 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000079 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 656858 1588 0 0 0 0 SRX023265, SRX023264 0.0 Metagenome 3300027070 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes) DOE Joint Genome Institute (JGI) 3300027070 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.180244 133369086 354417 70 4 128 8 SRX2014328 Unrestricted 0.0 Metagenome 3300045601 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_2_E DOE Joint Genome Institute (JGI) 3300045601 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 191693711 218661 96 1 116 1 Unrestricted 112.35 Metagenome 3300012287 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100327 University of Pennsylvania 3300012287 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4155362 6040 4 1 7 0 SRX756330 0.0 Metagenome 3300045997 *Microbiome Permanent Draft Sediment microbial communities from various rivers and their estuaries in the United States Sediment microbial communities from Parker River, Massachusetts, United States - BTRS19_Sengupta_10F DOE Joint Genome Institute (JGI) 3300045997 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sg.aditi@gmail.com Aditi Sengupta No Environmental Aquatic River Freshwater Sediment sediment 42.7498 -70.9289 1124151325 1994691 882 127 1591 221 Unrestricted 19.55 Metagenome 3300022833 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #292 DOE Joint Genome Institute (JGI) 3300022833 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 112095376 174430 64 10 82 17 SRX4396753 Unrestricted 23.12 Metagenome 3300036874 *Microbiome Permanent Draft Soil microbial communities from a coastal freshwater wetland in North Carolina, United States Soil microbial communities from coastal freshwater wetland in North Carolina, United States - 10NFC DOE Joint Genome Institute (JGI) 3300036874 Metagenome Analysis metaspades v. 3.13.0 Yes Yes peraltaa@ecu.edu Ariane Peralta No Environmental Terrestrial Wetlands Soil Unclassified soil 35.8956 -76.1655 688895064 1162050 241 7 434 10 SRX8387881 Unrestricted 13.85 Metagenome 3300006309 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_0500m University of Hawaii 3300006309 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 179178553 485745 335 19 486 20 0.0 Metagenome 2228664048 *Microbiome Permanent Draft Deep Underground Science and Engineering Laboratory groundwater microbial communities from South Dakota, US Mine water biofilm microbial communities from Lead, South Dakota, sample from rock fracture pool HS4850BF040511-1 University of Florida 2228664048 Metagenome Analysis released per PI No Yes dave.bergmann@bhsu.edu David Bergmann No Environmental Aquatic Groundwater Freshwater Unclassified Deep Underground Science and Engineering Laboratory groundwater 44.3427 -103.7606 8.53 5967802 10855 15 0 43 0 0.0 Metagenome 3300030427 *Microbiome Permanent Draft Deep subsurface porewater microbial communities from Mt Terri URL, St-Ursanne, Switzerland Deep subsurface porewater microbial communities from Mt Terri URL, St-Ursanne, Switzerland - BRH_36 Swiss Federal Institute of Technology in Lausanne 3300030427 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Groundwater Freshwater Unclassified Deep subsurface porewater 47.37892341 7.16496703 185233875 246037 112 1 133 0 0.0 Metagenome 3300020149 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant dump, University of Wisconsin, Madison, United States - 1B1A DOE Joint Genome Institute (JGI) 3300020149 Metagenome Analysis spades v. 3.10.1 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0758 -89.4125 131524990 229510 114 5 177 7 SRX3988355 Unrestricted 17.03 Metagenome 3300042377 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME31May2013-rr0825 DOE Joint Genome Institute (JGI) 3300042377 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 531301958 819879 130 21 161 24 Unrestricted 23.04 Metagenome 3300002451 *Microbiome Permanent Draft Arthropod gut microbial communities from Cuernavaca, Mexico Arthropod gut microbial communities from Cuernavaca, Mexico - Contigs_Hibr_8mil 3300002451 Metagenome Analysis released per JGI data releasing policy No Yes estrambo68@gmail.com Luis Manuel Bolanos No Host-associated Arthropoda: Myriapoda Gut Digestive system Unclassified Arthropod gut 18.925 -99.22843 4470615 9282 2 2 6 4 0.0 Metagenome 3300024326 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 64D DOE Joint Genome Institute (JGI) 3300024326 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 300717561 597905 220 60 321 101 SRX4466681 Unrestricted 17.59 Metagenome 3300040401 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Taiga, AK, USA - HEAL_001-O-20170724-COMP-DNA1 Battelle Memorial Institute 3300040401 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.87569 -149.21334 5383716 15690 28 1 48 1 0.0 Metagenome 3300004330 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Marine microbial communities from Galveston Bay (CSEDA13C- fraction 6) Shell Corporation 3300004330 Metagenome Analysis SOAPdenovo released per JGI data release policy No Yes ebalsop@lbl.gov, nicolas.tsesmetzis@shell.com Eric Alsop, Nicolas Tsesmetzis No Environmental Aquatic Oceanic Marine Sediment sediment 29.5 -94.76 31420221 81782 42 21 53 32 0.0 Metagenome 3300029146 *Microbiome Permanent Draft Aquariaum water viral communities from Chicago, USA Aquariaum water viral communities from Chicago, USA - Great Lakes - GLB2 Michigan State University 3300029146 Metagenome Analysis released Yes Yes No Environmental Aquatic Unclassified Aquaculture Unclassified Aquarium water 41.87 -87.61 6976097 15433 41 2 81 0 0.0 Metagenome 3300012269 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #497 DOE Joint Genome Institute (JGI) 3300012269 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 225303261 377605 158 45 217 67 SRX3295858 Unrestricted 0.0 Metagenome 3300059725 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1556A-02 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059725 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2022 -123.941 163099882 354166 172 20 315 26 Unrestricted 0.0 Metagenome 3300050236 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Butler, South Dakota, USA - 97_877_SD_DR_0cm_c1_T1_18O DOE Joint Genome Institute (JGI) 3300050236 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 45.27223 -97.8369 838043921 1301185 279 13 405 13 Restricted 13.06 Metagenome 3300001329 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A28-5cm)- 6 month illumina University of Tennessee 3300001329 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 31976169 162307 448 42 857 76 0.0 Metagenome 3300005703 *Microbiome Permanent Draft Marine microbial communities from the Baltic Sea Marine microbial communities from the Baltic Sea Royal Institute of Technology 3300005703 Metagenome Analysis Consed No Yes daniel.herlemann@gmx.de Daniel Herlemann No Environmental Aquatic Oceanic Marine Unclassified Marine 59.888937 24.847412 1811214 2168 1 0 1 0 0.0 Metagenome 3300049475 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Alaska, USA - kuparukriver_2019_sed_WHONDRS-S19S_0047 DOE Joint Genome Institute (JGI) 3300049475 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 68.64278 -149.40333 413616108 978917 599 14 1061 26 Unrestricted 12.68 Metagenome 3300002260 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP09-MA 3300002260 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300026683 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN352 (SPAdes) DOE Joint Genome Institute (JGI) 3300026683 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 8592918 28492 54 4 83 7 SRX3311797 Unrestricted 0.0 Metagenome 3300005095 *Microbiome Permanent Draft Hydrothermal chimney in EPR Hydrothermal chimney microbial communities from the East Pacific Rise - L vent 8 Beijing Genomics Institute (BGI) 3300005095 Metagenome Analysis IDBA-UD v. 1.1.1 released per JGI data release policy No Yes heying1982@sjtu.edu.cn Ying HE No Environmental Aquatic Unclassified Marine Unclassified marine 420551688 473176 143 2 114 1 0.0 Metagenome 3300021907 *Microbiome Permanent Draft Marine eukaryotic communities from various locations to study complex ecological interactions Marine eukaryotic communities from Monterey Bay, California, United States - M1_20Mar14CPVII9sort6BwellE17 DOE Joint Genome Institute (JGI) 3300021907 Metagenome Analysis spades v. 3.11.1-check Yes Yes azworden@mbari.org; twoyke@lbl.gov Alexandra Worden; Tanja Woyke No Environmental Aquatic Unclassified Marine Unclassified seawater 36.746 -122.0257 51995206 56773 3 1 8 1 Unrestricted 270.03 Metagenome 3300012603 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100611 University of Pennsylvania 3300012603 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 15666482 41092 25 0 39 0 SRX756483 0.0 Metagenome 3300036898 *Microbiome Permanent Draft Soil microbial communities from a coastal freshwater wetland in North Carolina, United States Soil microbial communities from coastal freshwater wetland in North Carolina, United States - 12PFC DOE Joint Genome Institute (JGI) 3300036898 Metagenome Analysis metaspades v. 3.13.0 Yes Yes peraltaa@ecu.edu Ariane Peralta No Environmental Terrestrial Wetlands Soil Unclassified soil 35.8956 -76.1655 796658042 1340462 319 19 539 33 SRX8388125 Unrestricted 14.81 Metagenome 3300029334 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 023_10_31_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029334 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 194153351 278891 225 0 303 0 0.0 Metagenome 3300004883 *Microbiome Permanent Draft Ecklonia radiata associated microbial communities from Long Bay, Malabar Australia Ecklonia radiata associated microbial communities from Long Bay, Malabar Australia Y2 University of New South Wales 3300004883 Metagenome Analysis idba-ud released per JGI data release policy Yes Yes z.qiu@student.unsw.edu.au Zhiguang Qiu No Host-associated Algae Unclassified Unclassified Unclassified Ecklonia radiata associated 60016902 94919 28 12 34 17 0.0 Metagenome 3300055376 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.18C.12 SIP fraction DOE Joint Genome Institute (JGI) 3300055376 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 157743727 321783 93 88 185 100 Unrestricted 10.52 Metagenome 3300028874 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_1 DOE Joint Genome Institute (JGI) 3300028874 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 1063539956 2278383 641 165 903 274 SRX5355609 Unrestricted 0.0 Metagenome 3300043763 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Para, Brazil - F25 DOE Joint Genome Institute (JGI) 3300043763 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -2.8548 -54.9565 1128273807 2787398 345 14 783 20 Unrestricted 9.41 Metagenome 3300027212 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027212 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2342 -123.9167 137106408 320209 159 11 230 26 SRX2753605 Unrestricted 23.96 Metagenome 3300060443 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210609_13_13 DOE Joint Genome Institute (JGI) 3300060443 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 470074659 684415 237 175 293 211 Unrestricted 41.13 Metagenome 3300070981 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_003-M-20170731-COMP-DNA1 3300070981 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 11498639 35292 58 9 96 12 0.0 Metagenome 3300043051 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5WB15 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043051 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 11735745 34384 44 5 57 7 SRX8379509 Unrestricted 29.22 Metagenome 3300007985 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-05 DOE Joint Genome Institute (JGI) 3300007985 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 930701049 1626830 895 50 1401 55 SRX3197918 Unrestricted 0.0 Metagenome 3300027778 *Microbiome Permanent Draft Wetland sediment microbial communities from St. Louis River estuary, Michigan under dissolved organic matter induced mercury methylation Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027778 Metagenome Analysis spades v. 3.11.1 Yes Yes diana.nemergut@duke.edu.deleted Diana Nemergut Yes 29632744 Environmental Aquatic Wetlands Freshwater Sediment Wetland sediment 46.6972164 -92.3279105 752251634 1800885 871 24 1709 54 SRX2775494 Unrestricted 0.0 Metagenome 3300070498 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_067-M-20170719-COMP-DNA1 Battelle Memorial Institute 3300070498 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 38.893949 -78.135536 6.29-6.42 2849738 9512 34 1 46 1 0.0 Metagenome 3300023117 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (version 2) DOE Joint Genome Institute (JGI) 3300023117 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1096857508 2087240 540 51 848 69 SRX4072578 Unrestricted 23.56 Metagenome 3300010324 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Lake sediment bacterial and archeal communities from Gulf of Boni, Indonesia to study Microbial Dark Matter (Phase II) - ?I18A1 metaG DOE Joint Genome Institute (JGI) 3300010324 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; aurele.vuillemin@gfz-potsdam.de Ramunas Stepanauskas; Aurele Vuillemin No Environmental Aquatic Lake Freshwater Sediment Lake sediment -2.75 121.05 7.2-7.4 904191672 1868665 827 0 1598 5 SRX2525675 Unrestricted 0.0 Metagenome 7000000692 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160643649 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000692 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 120355757 219548 0 0 0 0 0.0 Metagenome 3300007659 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 160158126 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007659 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 74681943 130554 54 0 99 0 0.0 Metagenome 3300026207 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV82 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026207 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 379755529 790175 307 7 466 13 SRX2781884 Unrestricted 0.0 Metagenome 3300003661 *Microbiome Permanent Draft Petroleum reservoir microbial communities from Reconcavo Basin, Brazil, analyzing oil degradation Petroleum reservoir microbial communities from Reconcavo Basin, Brazil, analyzing oil degradation - Bahia-well BA-2 3300003661 Metagenome Analysis CLC released by JGI data releasing policy No Yes inatalia.sierra@gmail.com Isabel Natalia Sierra Garcia No Environmental Terrestrial Oil Oil reservoir Unclassified Petroleum reservoir -12.2 -38.11 48430482 91365 13 1 41 0 0.0 Metagenome 3300026927 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 56 (SPAdes) DOE Joint Genome Institute (JGI) 3300026927 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 72240907 175671 74 0 171 0 SRX4341057 Unrestricted 0.0 Metagenome 3300050311 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_74 DOE Joint Genome Institute (JGI) 3300050311 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -76.91 160.935 352264570 473046 57 16 68 22 SRX18236981 Restricted 44.3 Metagenome 3300038683 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - SAG2 Michigan State University 3300038683 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 38.0 -124.0 46608455 130859 1 0 1 0 0.0 Metagenome 3300010943 *Microbiome Permanent Draft Wastewater viral communities and vesicles from water purifying plant in Alicante,Spain Wastewater viral communities and vesicles from water purifying plant in Alicante,Spain - replicate Ab2 Autonomous University of Barcelona 3300010943 Metagenome Analysis SPAdes-3.8.1-Linux released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Engineered Wastewater Unclassified Industrial wastewater Unclassified wastewater 38.34 -0.48 53248129 118990 8 0 14 0 0.0 Metagenome 3300017650 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched backyard soil microbial communities from Emeryville, California, USA - eDNA 5th pass 30_C Kraft BY (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017650 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes JMGladden@lbl.gov John Gladden No Environmental Terrestrial Unclassified Soil Unclassified soil 37.83 -122.29 529761033 902065 480 31 674 39 SRX4809041, SRX4809040 Unrestricted 0.0 Metagenome 3300029827 *Microbiome Permanent Draft Marine sediment microbial communities from New Orleans, USA to study impact of Deep Water Horizon explosion Marine sediment microbial communities from Barataria Bay, New Orleans, USA to study impact of Deep Water Horizon explosion - M1047 Battelle Memorial Institute 3300029827 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Coastal Marine Sediment Marine sediment 29.468 -89.882 574463394 1318599 388 3 854 6 0.0 Metagenome 3300043176 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from Nevada, United States - King's Pool (KP_S3) (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043176 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified Desert spring 36.4015 -116.2738 7.46 417318516 601138 161 44 255 84 SRX9167017 Unrestricted 91.99 Metagenome 3300028382 *Microbiome Permanent Draft Bras del Port September 2017 Non-marine hypersaline water viral communities from Bras del Port saltern ponds, Alicante, Spain - CR30_September 2016 University of Alicante 3300028382 Metagenome Analysis IDBA v. 1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Mar?a Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline water 38.1904 -0.5948 14588756 46116 0 0 0 0 0.0 Metagenome 3300034354 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17 DOE Joint Genome Institute (JGI) 3300034354 Metagenome Analysis metaspades v. 3.13.0 Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Aquatic Sediment Floodplain Unclassified sediment 38.9229 -106.9499 895891170 2272916 581 15 1106 17 SRX7631471 Unrestricted 7.3 Metagenome 3300009194 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT DOE Joint Genome Institute (JGI) 3300009194 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 39.849 -81.036 272883231 593571 596 6 1046 9 SRX2996510 Unrestricted 0.0 Metagenome 3300013800 *Microbiome Permanent Draft Wastewater microbial communities from municipal sewage treatment plants in Nanjing, China Wastewater microbial communities from municipal sewage treatment plant in Nanjing, China - ZZ_EW_meta Nanjing University 3300013800 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 119079746 299688 56 15 130 30 SRX425563 0.0 Metagenome 3300006000 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius sp. 3 HERON ISLAND DOE Joint Genome Institute (JGI) 3300006000 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 601004283 1433349 25 1 29 17 SRX2711972 Unrestricted 0.0 Metagenome 3300027379 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027379 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228508 -119.2716818 210376613 530374 235 3 421 3 SRX2522723 Unrestricted 0.0 Metagenome 7000000370 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159814214 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000370 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 106728777 159777 0 0 0 0 0.0 Metagenome 3300007895 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit number 3 of subject 159753524 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007895 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2363565 2756 1 0 2 0 0.0 Metagenome 3300048823 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 S2 10-14 DOE Joint Genome Institute (JGI) 3300048823 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3532 19.0474 666696185 958482 158 12 246 13 Restricted 15.97 Metagenome 3300003809 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH03Jun09 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003809 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 66921421 154512 86 27 131 42 SRX2565526 Unrestricted 0.0 Metagenome 3300033992 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035 DOE Joint Genome Institute (JGI) 3300033992 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1018926563 1896997 446 61 609 101 SRX7621631 Unrestricted 13.88 Metagenome 3300023445 *Microbiome Permanent Draft Marine microbial mats from Loihi Seamount, Hawaii, USA Marine microbial mat from Loihi Seamount, Hawaii, USA - Marker 34 Individual Assembly Western Washington University 3300023445 Metagenome Analysis metaSPAdes v. 3.10.0 Metagenomes associated with bioRxiv doi:10.1101/722066 Yes Yes hfullerton@gmail.com; cmoyer@hydro.biol.wwu.edu; mcallis@uw.edu Heather Fullerton; Craig Moyer; Sean McAllister No Environmental Aquatic Hydrothermal vents Marine Microbial mats Marine 18.903 -155.257 95810373 136501 49 3 78 5 0.0 Metagenome 7000000245 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 861967750 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000245 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 656172 1667 0 0 0 0 SRX024907, SRX098556 0.0 Metagenome 3300036988 *Microbiome Permanent Draft Soil microbial communities from a coastal freshwater wetland in North Carolina, United States Soil microbial communities from coastal freshwater wetland in North Carolina, United States - 6Pre DOE Joint Genome Institute (JGI) 3300036988 Metagenome Analysis metaspades v. 3.13.0 Yes Yes peraltaa@ecu.edu Ariane Peralta No Environmental Terrestrial Wetlands Soil Unclassified soil 35.8956 -76.1655 463363175 798368 221 7 420 13 SRX8387628 Unrestricted 13.81 Metagenome 3300025870 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI037_S3LV_10m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025870 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 804592008 1515808 436 120 573 189 Unrestricted 0.0 Metagenome 3300007746 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160502038 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007746 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 164506575 250963 148 0 204 0 0.0 Metagenome 3300022564 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 13 Selected contigs with viral hallmark genes Autonomous University of Barcelona 3300022564 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 1098202 1714 0 0 0 0 0.0 Metagenome 3300006184 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_750_biof - 1398105538117 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300006184 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 348389969 619485 193 71 308 81 SRX2867324, SRX2867325 Unrestricted 0.0 Metagenome 3300043622 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 219-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043622 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9622 -107.03 379342457 1119581 484 24 888 48 Unrestricted 6.94 Metagenome 3300014030 *Microbiome Permanent Draft Marine hypoxic microbial communities from the Gulf of Mexico, USA Marine hypoxic microbial communities from the Gulf of Mexico, USA - 11m_Station1_GOM_Metagenome Georgia Institute of Technology 3300014030 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 134977159 341564 132 5 182 12 SRX958280 0.0 Metagenome 3300025562 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025562 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.197227 -122.010124 211413657 431823 247 3 380 6 SRX7142759 Unrestricted 0.0 Metagenome 3300020283 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556066-ERR599155) CEA Genoscope 3300020283 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 23.4017 37.2183 77494907 204278 89 8 151 13 0.0 Metagenome 3300047191 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2019 IH02_30cm DOE Joint Genome Institute (JGI) 3300047191 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.358 19.046 35614540 65055 23 0 45 0 Restricted 60.19 Metagenome 3300039998 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Barrow Environmental Observatory, Tundra, AK, USA - BARR_051-O-20170808-COMP-DNA1 Battelle Memorial Institute 3300039998 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 71.28241 -156.61936 16986695 43561 54 2 107 4 0.0 Metagenome 3300023506 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_182B University of California, Irvine 3300023506 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 171065865 174761 23 0 38 0 0.0 Metagenome 3300001020 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1102 DOE Joint Genome Institute (JGI) 3300001020 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 889221 3085 19 0 22 1 SRX3311884 Unrestricted 0.0 Metagenome 3300056636 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.18C.13 SIP fraction DOE Joint Genome Institute (JGI) 3300056636 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 64659286 137845 66 43 146 71 Unrestricted 11.14 Metagenome 3300012975 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015 DOE Joint Genome Institute (JGI) 3300012975 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 969830463 2183977 644 14 1117 51 SRX3294340 Unrestricted 0.56 Metagenome 3300069377 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_044-M-20160718-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069377 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 46507153 147697 148 11 278 10 0.0 Metagenome 3300044707 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Sep2017-rr0320 DOE Joint Genome Institute (JGI) 3300044707 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1032251552 1473586 381 71 472 102 Unrestricted 16.84 Metagenome 3300007847 *Microbiome Permanent Draft Microbial communities from hot springs in different districts of India Microbial communities from hot springs in Navsari district, Gujarat, India - Unai Anand Agricultural University 3300007847 Metagenome Analysis Velvet released per JGI data release policy No Yes ssunil48@gmail.com Sunil Bhavsar No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 20.8486004 73.3361508 122821097 531146 2746 0 4979 1 0.0 Metagenome 7000000621 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159268001 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000621 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 21373229 47418 0 0 0 0 0.0 Metagenome 3300021176 *Microbiome Permanent Draft Wetland sediment microbial communities from Dorn Creek Dane County, Wisconsin, USA, enriched under anaerobic Fe-reducing conditions Wetland sediment microbial communities from Wisconsin, USA, enriched under anaerobic conditions and in the presence of Ferrihydrite-Humic Acid Coprecipitates and Hydrogen gas - 2AB University of Wisconsin, Madison 3300021176 Metagenome Analysis SPAdes 3.10.0 released by JGI data releasing policy Yes Yes jmejia@wisc.edu Jacqueline Mejia No Environmental Aquatic Wetlands Freshwater Sediment Wetland Sediment 43.144933 -89.471218 1114569709 2681879 462 21 810 30 0.0 Metagenome 3300046526 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere DOE Joint Genome Institute (JGI) 3300046526 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1211 -123.2691 639514583 1047772 238 78 420 80 Unrestricted 14.14 Metagenome 3300013150 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100279 University of Pennsylvania 3300013150 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 16920688 34635 11 0 27 0 SRX756622 0.0 Metagenome 3300011480 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway plastic -P00220 Weill Cornell Medical College 3300011480 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Plastic surface city subway plastic 40.8 -73.95 23005499 26464 19 0 21 0 SRX822199 0.0 Metagenome 3300012568 *Microbiome Permanent Draft Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada Freshwater microbial communities from Central Basin Methane Hotpot in Lake Erie, Ontario, Canada - Station 1365 - Top - Depth 1m Molecular Research LP (MR DNA) 3300012568 Metagenome Analysis metaSPAdes released by JGI data releasing policy No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.097417 -82.141111 8.4 10121172 27770 9 0 6 0 0.0 Metagenome 3300004179 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 4_LOW4 DOE Joint Genome Institute (JGI) 3300004179 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 224017928 597566 135 0 265 0 SRX2719627 Unrestricted 0.0 Metagenome 3300066280 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_006-O-20160719-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066280 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 75952581 225351 144 26 258 50 0.0 Metagenome 3300012515 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610 DOE Joint Genome Institute (JGI) 3300012515 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 181615765 480916 282 23 601 52 SRX3527437 Unrestricted 0.0 Metagenome 3300069546 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lajas Experimental Station, Atlantic Neotropical, PR, USA - LAJA_003-M-20160913-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069546 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 18.02125 -67.0769 52362707 161813 82 17 137 19 0.0 Metagenome 7000000297 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 764325968 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000297 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 142500853 212327 0 0 0 0 0.0 Metagenome 3300002784 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A4-10 DOE Joint Genome Institute (JGI) 3300002784 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 217401 752 27 0 32 0 SRX1991116 Unrestricted 0.0 Metagenome 3300023497 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_92A University of California, Irvine 3300023497 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 108539037 108570 13 0 21 0 0.0 Metagenome 3300044806 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Wood Brook, Stafford, England, United Kingdom - woodbrook_2019_sw_WHONDRS-S19S_0093 DOE Joint Genome Institute (JGI) 3300044806 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 52.8006 -2.3046 112657121 239466 164 21 280 33 Unrestricted 27.15 Metagenome 3300001489 *Microbiome Permanent Draft Contaminated soil microbial communities from Kortrijk, Flanders, Belgium Contaminated soil microbial communities from Kortrijk, Flanders, Belgium - BPS Kortrijk IS1071 3300001489 Metagenome Analysis Velvet 1.2.10 released by JGI data releasing policy No Yes Vincent No Environmental Terrestrial Unclassified Soil Unclassified Contaminated soil 50.805741 3.314317 655647 1114 0 0 0 0 0.0 Metagenome 3300045550 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-475 Genome Quebec 3300045550 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 54.209495 -130.147927 885290455 1864744 359 83 565 156 0.0 Metagenome 3300035308 *Microbiome Permanent Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-06-3_at_0-1_cm Genome Quebec 3300035308 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89673 -73.73461 366598745 979574 552 50 1156 89 0.0 Metagenome 3300069619 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from LBJ National Grassland , Southern Plains, TX, USA - CLBJ_006-M-20170412-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069619 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 33.40123 -97.57 14049521 44027 55 6 103 13 0.0 Metagenome 3300005782 *Microbiome Permanent Draft Marine sediment microbial communities from Aarhus Bay station M5, Denmark Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 125 cmbsf, PM3 Aarhus University 3300005782 Metagenome Analysis IDBA released per JGI data release policy No Yes starnas88@gmail.com Piotr Starnawski No Environmental Aquatic Coastal Marine Sediment Marine sediment 56.10555 10.463333 460126802 731779 366 3 593 0 0.0 Metagenome 3300030369 *Microbiome Permanent Draft Wastewater microbial communities from medical facility sewage samples near Freiburg, Germany Wastewater microbial communities from medical facility sewage samples near Freiburg, Germany - C1753 University of Freiburg 3300030369 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 48.0 8.0 38719709 74455 80 1 141 3 0.0 Metagenome 3300020729 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 hypolimnion DOE Joint Genome Institute (JGI) 3300020729 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu; rrmalmstrom@lbl.gov Katherine McMahon; Rex Malmstrom Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 137756086 277461 128 20 185 39 Unrestricted 0.0 Metagenome 3300069290 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Guanica State Forest and Biosphere Reserve, Puerto Rico - GUAN_004-M-20210922-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069290 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tropical forest Soil Unclassified Terrestrial soil 17.969254 -66.85267 3185668276 7530950 1558 27 3081 53 0.0 Metagenome 3300029726 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37297R1 Beijing Genomics Institute (BGI) 3300029726 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 134705751 180789 110 0 150 0 0.0 Metagenome 3300039366 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 566_M Beijing Genomics Institute (BGI) 3300039366 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 110891719 168120 129 0 212 0 ERX491214 0.0 Metagenome 3300020235 *Microbiome Permanent Draft Deep-sea sediment microbial communities from the Pacific Ocean trenches Deep-sea sediment microbial communities from the Kermadec Trench, Pacific Ocean - N075 JGI facility at Oak Ridge National Laboratory 3300020235 Metagenome Analysis Megahit released by Logan Peoples No Yes lpeoples@ucsd.edu Logan Peoples No Environmental Aquatic Oceanic Marine Sediment sediment -32.85037333 -177.65414 1030607232 1303443 270 12 308 15 0.0 Metagenome 3300044963 *Microbiome Permanent Draft Soil microbial communities from Blodgett Forest Research Station, California, USA Soil microbial communities from Blodgett Forest Research Station, California, USA - BWE201406032H1020_TS DOE Joint Genome Institute (JGI) 3300044963 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.9122 -120.6612 414356106 737532 217 18 417 33 Unrestricted 14.8 Metagenome 3300031640 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23 DOE Joint Genome Institute (JGI) 3300031640 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1604991940 3886716 372 1 623 8 SRX5665953 Unrestricted 13.07 Metagenome 3300027617 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027617 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 270118917 760660 495 33 977 61 SRX2574890 Unrestricted 0.0 Metagenome 3300001467 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN109 DOE Joint Genome Institute (JGI) 3300001467 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 39.23550963 -121.2836963 446586 1457 33 2 67 4 SRX3311732, SRX3311731 Unrestricted 0.0 Metagenome 3300030387 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019814-18 Beijing Genomics Institute (BGI) 3300030387 Metagenome Analysis Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 163183517 218860 141 0 223 0 0.0 Metagenome 3300018471 *Microbiome Permanent Draft Bovine feces microbial communities from beef and dairy calves in Davis, CA, USA Bovine feces microbial communities from dairy calf in Davis, CA, USA - DMJL001F re-assembly QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018471 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes jxnliu@ucdavis.edu Jinxin Liu No Host-associated Mammals Large intestine Digestive system Fecal feces 38.5449 -121.7405 108108963 164321 83 1 184 1 0.0 Metagenome 3300019739 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLC_8-9_MG DOE Joint Genome Institute (JGI) 3300019739 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 130268381 320232 247 33 450 58 SRX3983548 Unrestricted 3.89 Metagenome 3300039017 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Indian Ocean - SGH3 Michigan State University 3300039017 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 1.26600833 103.8333333 37763154 113568 8 1 31 2 0.0 Metagenome 3300043036 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Shale gas microbial communities from Fort St. John, British Columbia, Canada - UGR 1-1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043036 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back shale gas 56.0 -122.0 106736340 200985 126 19 148 46 SRX8356733 Unrestricted 71.31 Metagenome 3300069405 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_010-M-20170627-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069405 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 19655314 52269 77 2 159 7 0.0 Metagenome 3300027958 *Microbiome Permanent Draft Bioremediated contaminated groundwater microbial communities from North Railroad Avenue plume (NRAP), New Mexico Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-47 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027958 Metagenome Analysis spades v. 3.11.1 Yes Yes NNIvanova@lbl.gov; rebecca.reiss@nmt.edu Natalia Ivanova; Rebecca Reiss Yes 27980706 Environmental Aquatic Groundwater Deep subsurface Contaminated Bioremediated contaminated groundwater 35.992 -106.0797 472156048 834290 459 1 749 4 SRX2554387 Unrestricted 0.0 Metagenome 3300049164 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S16_A_D45 hydrophilic DOE Joint Genome Institute (JGI) 3300049164 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 413559306 730719 262 13 439 16 Unrestricted 31.15 Metagenome 3300042432 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2002-rr0500 DOE Joint Genome Institute (JGI) 3300042432 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 406348698 652492 172 20 229 26 Unrestricted 30.22 Metagenome 3300045434 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-504 Genome Quebec 3300045434 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.443092 -122.020294 1117927808 2255909 535 235 862 363 0.0 Metagenome 3300015347 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_01AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015347 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 339176096 589993 36 99 73 128 SRX3925860 Unrestricted 9.78 Metagenome 3300011162 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00216 Weill Cornell Medical College 3300011162 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.78 -73.97 21162404 33351 16 1 27 0 SRX822195 0.0 Metagenome 2170459020 *Microbiome Permanent Draft Switchgrass, maize and mischanthus litter microbial communities from University of Illinois Energy Farm, Urbana, IL Litter degradation NP2 University of Illinois, Urbana-Champaign 2170459020 Metagenome Analysis released per JGI data release policy No Yes lixz@illinois.edu Xiangzhen Li No Engineered Solid waste Composting Grass Unclassified Switchgrass, maize and mischanthus litter 40.1097 -88.2041 180800401 466969 233 65 477 86 0.0 Metagenome 3300013332 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100400 University of Pennsylvania 3300013332 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14670657 21945 6 3 18 4 SRX756257 0.0 Metagenome 3300043907 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lefini River, Moembe, Congo - CONGO_003 DOE Joint Genome Institute (JGI) 3300043907 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater -2.9134 15.6292 196406728 545401 251 8 456 15 Unrestricted 11.77 Metagenome 3300009414 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 DOE Joint Genome Institute (JGI) 3300009414 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 43.29 8.1 341688580 668906 193 0 331 1 SRX2753836 Unrestricted 0.0 Metagenome 3300061684 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0597 Microbiome Insights 3300061684 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 384320965 541903 118 5 182 9 0.0 Metagenome 3300043691 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 433-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043691 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9767 -107.0668 465653440 1240519 427 24 824 32 Unrestricted 7.91 Metagenome 3300005544 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG DOE Joint Genome Institute (JGI) 3300005544 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 42.3948 -85.3738 4670020045 13164505 3487 251 5965 443 SRX2740762 Unrestricted 0.0 Metagenome 3300052315 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_181031.NP2 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300052315 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 1383385227 3062508 669 45 1048 97 Restricted 0.0 Metagenome 3300020328 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100001971 (ERX555937-ERR599015) CEA Genoscope 3300020328 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 14.1468 -116.6821 296148660 686882 255 7 434 17 0.0 Metagenome 3300002542 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-3-D DOE Joint Genome Institute (JGI) 3300002542 Metagenome Analysis Yes Yes jsvander@ucdavis.edu Jean VanderGheynst Yes 27981239 Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 173711512 257913 193 9 261 17 SRX2557249 Unrestricted 0.0 Metagenome 3300031944 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1 DOE Joint Genome Institute (JGI) 3300031944 Metagenome Analysis spades v. 3.12.0 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 2000769590 5024730 1301 28 2402 42 SRX5809336 Unrestricted 7.53 Metagenome 3300007933 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 159591683 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007933 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 523300 1346 4 0 6 0 SRX022949, SRX022948 0.0 Metagenome 3300056651 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.20W.9 SIP fraction DOE Joint Genome Institute (JGI) 3300056651 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 256202403 460173 169 21 280 23 Unrestricted 12.72 Metagenome 3300021051 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos A1 DOE Joint Genome Institute (JGI) 3300021051 Metagenome Analysis spades v. 3.10.1 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Deep subsurface sediment 38.96 -106.99 184633818 523046 294 5 521 10 SRX4002655 Unrestricted 24.1 Metagenome 3300011825 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00352 Weill Cornell Medical College 3300011825 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.52 -74.2 42888280 61220 35 1 35 1 SRX822324 0.0 Metagenome 3300070822 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from North Sterling, Colorado, USA - STER_031-M-20170605-COMP-DNA1 3300070822 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Agricultural land Soil 118001306 317837 98 9 198 12 0.0 Metagenome 3300059417 *Microbiome Permanent Draft Sorghum rhizosphere and bulk soil microbial communities from University of Arizona Maricopa Agricultural Center, AZ, USA Soil microbial communities from unplanted plot in University of Arizona Maricopa Agricultural Center, AZ, USA - 1_0-15_MAC_20210810 DOE Joint Genome Institute (JGI) 3300059417 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Agricultural land Soil Unclassified Soil 33.07735 -111.974819 482342556 1152874 573 15 1046 30 Unrestricted 7.69 Metagenome 3300055547 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.16C.10 SIP fraction DOE Joint Genome Institute (JGI) 3300055547 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 277108184 521627 132 7 179 16 Unrestricted 13.77 Metagenome 3300003793 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Jun08 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003793 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 25637723 65708 52 31 95 47 SRX2565404 Unrestricted 0.0 Metagenome 3300040930 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - FS5_Glycine_1 DOE Joint Genome Institute (JGI) 3300040930 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.5324 -110.7974 85586471 148097 49 0 83 0 SRX9633358 Unrestricted 540.09 Metagenome 3300048554 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_200923.NP1 DOE Joint Genome Institute (JGI) 3300048554 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 924489546 1968176 608 160 941 295 Unrestricted 12.02 Metagenome 3300001535 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-PF-15A)- 1 week illumina University of Tennessee 3300001535 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 422439634 1312456 595 11 941 26 0.0 Metagenome 3300038635 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes in Niagara, Canada Freshwater lake microbial communities from the Great Lakes in Niagara, Canada - NB-1P-Aug9-2012 McMaster University 3300038635 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 42.8746 -79.2323 3957034 9450 20 0 24 0 0.0 Metagenome 3300007099 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Stylissa sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina ""control"", stU" University of New South Wales 3300007099 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Stylissa sp. (marine sponge) -9.752083 150.854133 98991932 242778 24 2 28 8 0.0 Metagenome 3300014525 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 70_B Beijing Genomics Institute (BGI) 3300014525 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 66581715 66362 28 0 34 0 ERX491301 0.0 Metagenome 7000000052 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 404239096 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000052 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 125496045 212866 0 0 0 0 0.0 Metagenome 3300017774 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D DOE Joint Genome Institute (JGI) 3300017774 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 511640998 1195985 3 0 6 0 SRX7205063 Unrestricted 0.0 Metagenome 3300001148 *Microbiome Permanent Draft Recombinant microbial communities from the University of Alicante, Spain Rec.More10kb 454 Life Sciences 3300001148 Metagenome Analysis released per JGI data release policy No Yes pedro.gonzalez@ua.es Pedro Gonz?lez-Torres, Pedro I?aki Gonzalez Torres No Engineered Modeled Unclassified Unclassified Unclassified Recombinated 38.383458 -0.51203 46797533 46804 82 0 84 0 0.0 Metagenome 3300018878 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet fungal communities from Santa Barbara, California, USA - diluted pellet 1 DOE Joint Genome Institute (JGI) 3300018878 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4204 -119.6671 4860092604 8596643 9788 60 15209 78 SRX3963535 Unrestricted 11.78 Metagenome 3300030060 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_070 - TARA_R100001015 CEA Genoscope 3300030060 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -20.4091 -3.1759 315710705 612225 39 0 53 1 0.0 Metagenome 3300020202 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_10 DOE Joint Genome Institute (JGI) 3300020202 Metagenome Analysis spades v. 3.10.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.3049 -116.2547 1340989938 3214547 862 44 1542 76 SRX3936365 Unrestricted 15.92 Metagenome 3300029761 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 063_3_10_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029761 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 176383878 234075 187 0 277 0 0.0 Metagenome 3300039321 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 572_M Beijing Genomics Institute (BGI) 3300039321 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 112996104 150741 78 1 125 0 ERX491226 0.0 Metagenome 3300042290 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2003-ww0406 DOE Joint Genome Institute (JGI) 3300042290 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 925245469 1430967 344 46 466 79 Unrestricted 23.97 Metagenome 3300034141 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 54SNC DOE Joint Genome Institute (JGI) 3300034141 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological biocrust 34.3778 -117.6098 321930701 757655 527 26 864 42 SRX7621476 Unrestricted 9.02 Metagenome 3300029053 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 345_M Beijing Genomics Institute (BGI) 3300029053 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 155279970 198826 118 0 228 0 ERX491102 0.0 Metagenome 3300045065 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Plains ecozone, Canada - Lake 04-618 Genome Quebec 3300045065 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 61.890891 -116.542274 1270539657 2906866 741 99 1339 158 0.0 Metagenome 3300048645 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from North Pacific Ocean - CTD-AT42-06-005-500m-0.1 DOE Joint Genome Institute (JGI) 3300048645 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 8.41285 -104.4194 508726016 836983 323 3 480 2 Unrestricted 46.64 Metagenome 3300069432 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountain National Park, Central Plains, CO, USA - RMNP_019-M-20170807-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069432 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.27591 -105.54592 6078943 18737 27 4 51 6 0.0 Metagenome 3300045018 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_300m_2014 DOE Joint Genome Institute (JGI) 3300045018 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 1140011146 2227520 885 9 1609 7 Unrestricted 10.95 Metagenome 3300005989 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 7/17/14 B DNA DOE Joint Genome Institute (JGI) 3300005989 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ebyoung@uwm.edu Erica Young, Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 1737327698 4504138 1536 397 2355 709 SRX2747782 Unrestricted 0.0 Metagenome 3300045945 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P34SSC2_190917_c DOE Joint Genome Institute (JGI) 3300045945 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 954955118 1470609 301 1 474 2 SRX20650080 Unrestricted 11.52 Metagenome 3300028111 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 35D DOE Joint Genome Institute (JGI) 3300028111 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 336191870 663251 185 17 280 25 SRX5171613 Unrestricted 18.68 Metagenome 3300048057 *Microbiome Permanent Draft Marine and freshwater sediment microbial communities from various locations Marine sediment microbial communities from Caspian Sea - Caspian_Core_2_8-12_cm DOE Joint Genome Institute (JGI) 3300048057 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes smtechtm@mtu.edu Stephen Techtmann No Environmental Aquatic Sediment Marine Unclassified Marine sediment 39.9902 51.5008 889204878 2058592 660 11 1120 20 Unrestricted 7.84 Metagenome 3300013938 *Microbiome Permanent Draft Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 235 Chalmers University of Technology 3300013938 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 87485883 192525 93 0 169 0 SRX193537 0.0 Metagenome 3300022885 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #600 DOE Joint Genome Institute (JGI) 3300022885 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 232800896 426116 153 17 206 28 SRX4397127 Unrestricted 16.41 Metagenome 3300031589 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from Davis Island wharf, Antarctic Ocean - #35 DOE Joint Genome Institute (JGI) 3300031589 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5781 77.9617 403564170 830761 281 261 372 394 SRX5650040 Unrestricted 15.33 Metagenome 3300027130 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepC_8d DOE Joint Genome Institute (JGI) 3300027130 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 135902511 240622 121 11 190 17 SRX5245194 Unrestricted 14.14 Metagenome 7000000139 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159207311 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000139 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 50436752 95984 0 0 0 0 0.0 Metagenome 3300018894 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - early stage, bundles v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018894 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 299690439 538688 243 4 435 9 0.0 Metagenome 3300005655 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB14_supernatant DOE Joint Genome Institute (JGI) 3300005655 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 1065305055 2572538 1007 38 1623 70 SRX2838878 Unrestricted 0.0 Metagenome 7000000666 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 370425937 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000666 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 88881713 168990 0 0 0 0 0.0 Metagenome 3300005967 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius geniculatus LIZARD ISLAND.2 DOE Joint Genome Institute (JGI) 3300005967 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 491089807 900295 42 46 53 56 SRX2712094 Unrestricted 0.0 Metagenome 3300007126 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158337416 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007126 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 141393750 205984 131 0 169 0 0.0 Metagenome 3300028244 *Microbiome Permanent Draft Soil microbial communities from hillslopes of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-4-W_D DOE Joint Genome Institute (JGI) 3300028244 Metagenome Analysis spades v. 3.11.1 Yes Yes laurameredith@email.arizona.edu Laura Meredith No Engineered Artificial ecosystem Soil Mesocosm Unclassified soil 32.5789 -110.8512 24156293 70063 27 0 66 0 SRX5246413 Unrestricted 188.84 Metagenome 3300031567 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050623_t1 DOE Joint Genome Institute (JGI) 3300031567 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5341 -110.798 291884447 654114 159 0 200 1 SRX5650792 Unrestricted 197.69 Metagenome 3300060894 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Konza Prairie Bio Station, Kansas, USA - KONZ_043-M-20210721-comp-1 DOE Joint Genome Institute (JGI) 3300060894 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Grasslands Soil Unclassified Terrestrial soil 39.102192 -96.56118 2439531634 4236970 608 7 1089 11 Unrestricted 14.02 Metagenome 3300011416 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT551_2 DOE Joint Genome Institute (JGI) 3300011416 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8893 -106.9082 284551640 632585 232 28 538 46 SRX3527520 Unrestricted 0.0 Metagenome 3300041934 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from the Rocky Mountain Biological Laboratory (RMBL), Gothic, Colorado, United States - 2018WM_10W DOE Joint Genome Institute (JGI) 3300041934 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9595 -106.99 175256422 555489 241 17 483 16 SRX14810889 Unrestricted 6.82 Metagenome 3300038440 *Microbiome Permanent Draft Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA - DeMMO4 v2 Argonne National Laboratory 3300038440 Metagenome Analysis Megahit v. 1.0.6.1 Release as per PI request (GOLD-1409) SM 8.16.2021 No Yes lmmomper@gmail.com; maggie@northwestern.edu Caitlin Casar; Magdalena Osburn No Environmental Terrestrial Aquifer Deep subsurface Unclassified Terrestrial subsurface fluids 44.350833 -103.765833 7.46 148719842 185949 99 3 144 3 0.0 Metagenome 3300028422 *Microbiome Permanent Draft Black smoker hydrothermal vent sediment microbial communities from the Guaymas Basin, Mid-Atlantic Ridge, South Atlantic Ocean Black smoker hydrothermal vent sediment microbial communities from the Guaymas Basin, Mid-Atlantic Ridge, South Atlantic Ocean - BSmoChi-MAR-TVG12 re-analysis Beijing Genomics Institute (BGI) 3300028422 Metagenome Analysis idba v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Hydrothermal vents Marine Black smokers hydrothermal vents -15.160005 -13.350021 4930768612 7482251 2965 59 4747 83 0.0 Metagenome 3300026635 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1093 (SPAdes) DOE Joint Genome Institute (JGI) 3300026635 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 2372904 8185 34 3 53 5 SRX3311881 Unrestricted 0.0 Metagenome 3300042546 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2009-rr0688 DOE Joint Genome Institute (JGI) 3300042546 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 740294442 1187885 381 65 513 110 Unrestricted 18.99 Metagenome 3300011671 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00636 Weill Cornell Medical College 3300011671 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.81 -73.94 28163104 48798 14 0 17 0 SRX822603 0.0 Metagenome 3300042619 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Porotermes adamsoni from near Lamington National Park, Queensland, Australia - Po218 Eurofins MWG Operon 3300042619 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut -28.214046 153.126037 1465869142 1600653 252 35 290 61 0.0 Metagenome 3300049307 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA17 DOE Joint Genome Institute (JGI) 3300049307 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 391732031 985690 360 5 712 15 Unrestricted 7.52 Metagenome 3300019932 *Microbiome Permanent Draft Arctic soil viral communities from Stordalen Mire, Sweden Arctic soil viral communities from Stordalen Mire, Sweden - P-A1 DOE Joint Genome Institute (JGI) 3300019932 Metagenome Analysis spades v. SPAdes version: 3.10.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Terrestrial Palsa Soil Mineral soil core arctic soil 68.3526 19.0147 2380526 6649 2 2 11 6 SRX5627518 Restricted 0.0 Metagenome 3300034033 *Microbiome Permanent Draft Deception Metagenome Fumarole sediment microbial communities from Fumarole Bay, Deception Island, Antarctica - FBB3 The Brazilian National Council for Scientific and Technological Development (CNPq) 3300034033 Metagenome Analysis IDBA-ud v. 1.1.1 released per Amanda Bendia -- GOLD-1013 No Yes amandagbendia@gmail.com Amanda Bendia No Environmental Aquatic Volcanic Marine Unclassified fumarole sediment -62.96 -60.71 59552896 75775 36 1 73 1 0.0 Metagenome 3300005899 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_302 DOE Joint Genome Institute (JGI) 3300005899 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 365876524 1167455 438 14 853 21 SRX2564564, SRX2581061 Unrestricted 0.0 Metagenome 3300025375 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH22May08 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025375 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 119963892 236310 96 43 134 70 SRX2565942 Unrestricted 0.0 Metagenome 3300050251 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_2 DOE Joint Genome Institute (JGI) 3300050251 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.598 161.007 801778612 1448693 238 58 353 90 SRX18235857 Restricted 15.88 Metagenome 3300022420 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1OPP1 JM25 AGRF 3300022420 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 47445541 87638 32 0 57 0 0.0 Metagenome 3300001502 *Microbiome Finished Human fecal microbial communities from the University of Tokyo, Japan, of healthy Japanese infants and adults Human fecal microbial communities from the University of Tokyo - healthy human sample In-M, Infant, Female 3300001502 Metagenome Analysis PCAP released per Nikos No Yes hattori@k.u-tokyo.ac.jp Hattori M Yes 17916580 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 35.71 139.76 0 0 0 0 0 0 0.0 Metagenome 3300002436 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP16-I1 3300002436 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300050460 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - W10NW16 DOE Joint Genome Institute (JGI) 3300050460 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 104991305 203464 171 46 344 57 Unrestricted 19.59 Metagenome 3300038602 *Microbiome Permanent Draft Freshwater microbial communities from various watersheds in Southwestern British Columbia, Canada Freshwater microbial communities from Southwestern British Columbia, Canada - MOCK_6 University of British Columbia 3300038602 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 49.0 -123.0 41067378 64424 21 0 17 0 0.0 Metagenome 3300035222 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2018_500m DOE Joint Genome Institute (JGI) 3300035222 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 50.0 -145.0 566964335 1399545 410 62 661 100 SRX8188613 Unrestricted 16.41 Metagenome 3300025240 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP2914 (SPAdes) DOE Joint Genome Institute (JGI) 3300025240 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 29.97 -23.69 131191846 232540 125 9 209 12 SRX1981967 Unrestricted 0.0 Metagenome 3300044629 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME20Aug2018-rr0882 DOE Joint Genome Institute (JGI) 3300044629 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1255710019 1866871 556 97 759 138 Unrestricted 15.22 Metagenome 3300032224 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime Ecozone, Canada - Lake 07-011 Genome Quebec 3300032224 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.373545 -64.575777 749597665 1478228 411 77 717 160 0.0 Metagenome 3300015684 *Microbiome Permanent Draft Microbial communities associated with sugarcane Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.2_F02 Universidade Estadual de Campinas 3300015684 Metagenome Analysis SPADES released by JGI data releasing policy No Yes scs.rafael@gmail.com Rafael Souza No Host-associated Plants Unclassified Roots Unclassified Root Endosphere -22.8187222 -47.05896667 6950944 8743 5 0 4 0 0.0 Metagenome 3300004802 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA2M DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300004802 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tmcmahon@engr.wisc.edu, tmcmahon@engr.wisc.edu; shaomei.he@gmail.com Katherine McMahon, Katherine McMahon; Shaomei He No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 527995768 1302828 507 134 862 213 SRX2565139 Unrestricted 0.0 Metagenome 3300045786 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - P3-R1-A DOE Joint Genome Institute (JGI) 3300045786 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.0477 494975021 1039361 220 10 355 25 Unrestricted 7.34 Metagenome 3300025596 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_150m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025596 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 321373559 631955 260 18 381 25 Unrestricted 0.0 Metagenome 3300050182 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_3B2_100218_0210 DOE Joint Genome Institute (JGI) 3300050182 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 1760404017 2688323 520 176 811 266 Unrestricted 22.38 Metagenome 3300012682 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ223 (23.06) DOE Joint Genome Institute (JGI) 3300012682 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.0471 164.011 1628635400 3300976 934 59 1512 92 SRX3369477 Unrestricted 0.0 Metagenome 3300027352 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage D2F03 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027352 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 36509819 44112 47 0 37 0 SRX3195124 Unrestricted 0.0 Metagenome 3300009038 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG DOE Joint Genome Institute (JGI) 3300009038 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 2296201025 4413417 1111 41 1889 70 SRX2933535 Unrestricted 0.0 Metagenome 3300033803 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_0_10 DOE Joint Genome Institute (JGI) 3300033803 Metagenome Analysis spades v. 3.13.0 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Unclassified peatland -6.3272 -74.8136 470172285 1312463 517 12 895 14 SRX7525132 Unrestricted 6.39 Metagenome 3300006522 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 809635352 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006522 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 120337333 179012 105 0 146 0 0.0 Metagenome 2149837015 *Microbiome Permanent Draft Human fecal microbial communities from the University of Arizona, for HMP training Human fecal microbial communities from the University of Arizona (HMP) - Ef1 Chinese National Human Genome Center, Beijing 2149837015 Metagenome Analysis released per JGI data release policy No Yes mbsulli@email.arizona.edu, mbsulli@gmail.com Matthew Sullivan No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 56.128817 9.239502 16681402 23416 101 0 179 0 0.0 Metagenome 3300018984 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 9 hrs after wetting v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018984 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 431579812 892816 362 12 558 21 0.0 Metagenome 3300040158 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - NIWO_001-O-20160830-COMP-DNA1 Battelle Memorial Institute 3300040158 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.05425 -105.58237 8880502 21991 31 9 65 12 0.0 Metagenome 3300002108 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A3-10 DOE Joint Genome Institute (JGI) 3300002108 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 6608492 19230 40 0 77 0 SRX1990504 Unrestricted 0.0 Metagenome 3300043077 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - Beaver1Cecum1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043077 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.18 -122.54 250412874 476178 534 10 888 15 SRX8344186 Unrestricted 22.58 Metagenome 3300044645 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2017-rr0288 DOE Joint Genome Institute (JGI) 3300044645 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1084056482 1601062 388 70 509 118 Unrestricted 14.43 Metagenome 3300012809 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched millipede-associated microbial communities from UW Madison campus, WI, USA - HID1971M_E11 MG DOE Joint Genome Institute (JGI) 3300012809 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 73809833 90691 62 0 90 0 SRX3564672 Unrestricted 0.0 Metagenome 3300011594 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metalplastic -P01247 Weill Cornell Medical College 3300011594 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface City subway metal/plastic 40.6 -73.97 24937403 38078 8 0 11 0 SRX823202 0.0 Metagenome 3300049592 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 DOE Joint Genome Institute (JGI) 3300049592 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.407926 -82.180036 1886059530 3162627 668 17 1222 27 Unrestricted 13.96 Metagenome 3300029782 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37197R1 Beijing Genomics Institute (BGI) 3300029782 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 233824425 301146 196 0 268 0 0.0 Metagenome 3300004689 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE20Aug07 (version 2) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300004689 Metagenome Analysis MEGAHIT v0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 92227011 306048 102 71 182 227 SRX2565228 Unrestricted 0.0 Metagenome 3300015353 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_22AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015353 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 426975782 739994 122 514 188 996 SRX3925760 Unrestricted 7.8 Metagenome 3300002800 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G07K3-12 DOE Joint Genome Institute (JGI) 3300002800 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 201482 692 21 0 33 0 SRX1991263 Unrestricted 0.0 Metagenome 3300027431 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A1a-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300027431 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 26696346 90391 95 1 183 3 SRX1991128 Unrestricted 0.0 Metagenome 3300014680 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00165 Weill Cornell Medical College 3300014680 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.84 -73.94 37883904 55906 14 1 27 4 SRX822144 0.0 Metagenome 3300070996 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_003-M-20180531-COMP-DNA1 3300070996 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 41524500 120246 131 16 292 20 0.0 Metagenome 3300028410 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #432 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028410 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 146757091 308436 135 15 213 25 SRX3295568 Unrestricted 0.0 Metagenome 3300026792 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A3-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026792 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 25590243 85424 112 4 184 7 SRX1991269 Unrestricted 0.0 Metagenome 3300006750 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG DOE Joint Genome Institute (JGI) 3300006750 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -16.21 -76.61 315414044 697153 37 0 48 0 SRX2929102 Unrestricted 0.0 Metagenome 3300024303 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet fungal communities from Santa Barbara, California, USA - pellet 3 Spades (v3) (version 3) DOE Joint Genome Institute (JGI) 3300024303 Metagenome Analysis spades v. 3.11.1-check No Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4204 -119.6671 4293320735 8207746 4437 29 6071 40 SRX3964279 Unrestricted 0.0 Metagenome 3300043598 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 125-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043598 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9389 -107.0115 527721660 1214862 309 25 570 46 Unrestricted 8.69 Metagenome 3300024244 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 125D_r DOE Joint Genome Institute (JGI) 3300024244 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 229307918 554018 235 48 373 78 SRX4474412 Unrestricted 14.41 Metagenome 3300003975 *Microbiome Permanent Draft Rhopaloeides odorabile microbial communities from Davies Reef, Great Barrier Reef, Australia Rhopaloeides odorabile microbial communities from Davies Reef, Great Barrier Reef, Australia - sample 2 3300003975 Metagenome Analysis IDBA-UD released by JGI data releasing policy Yes Yes n.webster@aims.gov.au Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Rhopaloeides odorabile -18.51 147.39 3176455030 11855166 4671 888 7860 1704 0.0 Metagenome 3300014894 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01502 Weill Cornell Medical College 3300014894 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.99 14766249 22835 16 0 19 0 SRX823378 0.0 Metagenome 3300007853 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 765560005 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007853 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 110014100 121037 71 0 85 0 0.0 Metagenome 3300037872 *Microbiome Permanent Draft Seawater and sediment microbial communities from various locations Seawater microbial communities from eastern tropical North Pacific Ocean - AMALJGI-DNA-16 DOE Joint Genome Institute (JGI) 3300037872 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bbw@princeton.edu Bess Ward No Environmental Aquatic Oceanic Marine Unclassified seawater 18.0 -102.0 780156818 1994382 651 180 1148 271 SRX9401068 Unrestricted 13.8 Metagenome 3300025730 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC057_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025730 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 41.53 -90.43 649102493 1070818 476 0 690 0 SRX2157905 Unrestricted 0.0 Metagenome 3300021137 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 hypolimnion v3 DOE Joint Genome Institute (JGI) 3300021137 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.0412 -89.6864 263005214 521171 155 18 263 24 Unrestricted 0.0 Metagenome 3300015198 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G2A, Ice surface) University of Bristol 3300015198 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.162953 -50.018269 6.42 325818814 554932 118 16 165 27 0.0 Metagenome 3300037560 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Sediment microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR13_sedM7 DOE Joint Genome Institute (JGI) 3300037560 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Sediment sediment 47.7538 -127.7637 1010136865 2815379 1107 1 2140 0 SRX9096611 Unrestricted 11.97 Metagenome 3300028734 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E2_1 DOE Joint Genome Institute (JGI) 3300028734 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 442572368 1017176 506 84 741 155 SRX5355851 Unrestricted 0.0 Metagenome 3300045929 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P15SSC1_190915_i DOE Joint Genome Institute (JGI) 3300045929 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 532519874 889187 203 2 347 7 SRX20650987 Unrestricted 13.0 Metagenome 3300035210 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_0310_18 DOE Joint Genome Institute (JGI) 3300035210 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9141 -147.8344 701553597 1733163 592 6 957 7 SRX7633915 Unrestricted 7.22 Metagenome 3300047637 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA115-BCT DOE Joint Genome Institute (JGI) 3300047637 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6779 -83.4786 547903182 1281360 222 31 471 45 Unrestricted 9.29 Metagenome 3300055553 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.16C.10 SIP fraction DOE Joint Genome Institute (JGI) 3300055553 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 271098520 520787 189 26 319 53 Unrestricted 10.93 Metagenome 3300040215 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 097B_R1 University of Maryland 3300040215 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.71338889 27.08244444 9403500 17375 47 2 79 4 0.0 Metagenome 3300000844 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from University of Liverpool Illum_50pgPark_MetaVelvet University of Liverpool 3300000844 Metagenome Analysis MetaVelvet released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 10590864 20767 61 0 110 0 0.0 Metagenome 3300030499 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (v2) (version 3) DOE Joint Genome Institute (JGI) 3300030499 Metagenome Analysis spades v. 3.12.0 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.0936 -100.2988 495573182 1313267 948 106 1818 171 SRX2122695 Unrestricted 0.0 Metagenome 3300027838 *Microbiome Permanent Draft Marine microbial communities from western Arctic Ocean Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027838 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh Yes 30271971 Environmental Aquatic Oceanic Marine Unclassified Marine 73.2247 -150.2247 1341640644 2685119 768 118 1086 226 SRX2997167 Unrestricted 0.0 Metagenome 3300010001 *Microbiome Finished Microbiology of confined controlled built environments Private houses (including a private home) floor microbial communities from the Eekholt wildlife park, Eekholt, Germany - private houses, PMA treated samples, F Eurofins MWG Operon 3300010001 Metagenome Analysis Ray Meta released per JGI data release policy No Yes alexander.mahnert@gmail.com Alexander Mahnert No Engineered Built environment Unclassified House Unclassified built environment 53.953343 10.034461 54935282 65638 19 3 7 2 0.0 Metagenome 3300070886 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_073-M-20190618-COMP-DNA1 Battelle Memorial Institute 3300070886 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 45.825842 -121.960125 5.41-5.79 40042498 123240 97 10 159 12 0.0 Metagenome 3300025414 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_6_10 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025414 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 127926388 291141 101 17 179 26 SRX3002043 Unrestricted 0.0 Metagenome 3300045209 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_4_C DOE Joint Genome Institute (JGI) 3300045209 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 189371066 223412 113 1 122 1 Unrestricted 103.54 Metagenome 3300048629 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent fluid microbial communities from North Pacific Ocean - A5008A-Sterivex DOE Joint Genome Institute (JGI) 3300048629 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 9.841667 -104.2917 401284916 686605 490 36 814 48 Unrestricted 30.63 Metagenome 3300029544 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P034V1 Beijing Genomics Institute (BGI) 3300029544 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 160954738 201905 116 0 191 0 0.0 Metagenome 3300003603 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Archaeal communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter C (PS_C) MetaG DOE Joint Genome Institute (JGI) 3300003603 Metagenome Analysis Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Unclassified Thermal springs Unclassified Hot spring 44.376 -110.69 79761076 124430 68 0 78 0 SRX2577286 Unrestricted 0.0 Metagenome 3300032098 *Microbiome Permanent Draft Microbial communities from the deep biosphere Fracture brine microbial communities fom Vermilion Range, Minnesota, USA - DDH951 re-assembly The Marine Biological Laboratory 3300032098 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Fracking water Deep subsurface Unclassified Fracture brine 47.82333 -92.23722 62204128 127958 36 4 64 7 SRX2058520 0.0 Metagenome 3300022412 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1OPP2 JM26 AGRF 3300022412 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 45744346 85607 30 1 48 3 0.0 Metagenome 3300023016 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-213 DOE Joint Genome Institute (JGI) 3300023016 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Unclassified Plant litter Unclassified leaf litter 40.2526 -123.026 56258482 102486 13 16 15 21 SRX4392062 Unrestricted 59.35 Metagenome 3300051394 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D20_SEK1_4_to_RHK1 DOE Joint Genome Institute (JGI) 3300051394 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.154 -124.211 590665202 954527 304 124 489 176 Unrestricted 15.13 Metagenome 3300069351 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_007-M-20170627-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069351 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 25344109 73838 106 13 181 9 0.0 Metagenome 3300006510 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 370425937 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006510 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 3834602 5130 2 0 2 0 0.0 Metagenome 3300012661 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100372 University of Pennsylvania 3300012661 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 67135840 108542 74 0 137 0 SRX756285 0.0 Metagenome 2236876003 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Estuarine microbial communities from Columbia River, sample from South Channel ETM site, GS313-0p8-ETM-15m University of South Carolina 2236876003 Metagenome Analysis No Yes mariyasmit@hotmail.com Mariya Smit, Mariya W. Smit No Environmental Aquatic Intertidal zone Marine Estuary Marine estuarine 46.249 -123.986 53516835 153823 112 11 188 36 0.0 Metagenome 3300037384 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18A_2a_12 mgh University of Alberta 3300037384 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 72160016 93132 30 1 47 1 0.0 Metagenome 3300050161 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D15_RHK1_4_to_RHK1 DOE Joint Genome Institute (JGI) 3300050161 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.154 -124.211 481643640 939746 314 80 508 132 Unrestricted 17.05 Metagenome 7000000528 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human saliva microbial communities from NIH, USA - visit 2, subject 763496533 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000528 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human 39.0042816 -77.1012173 22475533 49887 0 0 0 0 0.0 Metagenome 3300038999 *Microbiome Permanent Draft Marine microbial communities from North Atlantic, Canada Marine microbial communities from North Atlantic, Canada - H3G National Research Council, Canada Plant Biotechnology Institute 3300038999 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 46.707 -48.785 38095640 45628 24 1 27 4 0.0 Metagenome 3300054040 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_19_10 re-annotation DOE Joint Genome Institute (JGI) 3300054040 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 230514172 510401 201 26 363 34 SRX3005979 0.0 Metagenome 3300047186 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2017 IH02_5cm DOE Joint Genome Institute (JGI) 3300047186 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.3583 19.0442 286254697 483958 187 10 381 11 Restricted 22.59 Metagenome 3300014984 *Microbiome Permanent Draft Danish lakes Microbial communities Depth profiles Lake Almind and Hund Freshwater microbial communities from Lake Almind, Silkeborg, Region Midtjylland, Denmark - ALS_03.08.12_1m metaSPAdes assemblies Odense University Hospital 3300014984 Metagenome Analysis metaSPAdes 3.7.1 released by JGI data releasing policy Yes Yes atreusch@biology.sdu.dk Alexander Treusch No Environmental Aquatic Lake Freshwater Unclassified Freshwater 56.148 9.546 7.5 4398092 17526 11 6 28 9 0.0 Metagenome 3300046744 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_180711.NP2 DOE Joint Genome Institute (JGI) 3300046744 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 581351313 1210207 296 21 500 54 Unrestricted 17.13 Metagenome 3300035699 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Lake Stinear, Antarctica - #2 Australian Centre for Ecogenomics 3300035699 Metagenome Analysis Spades v. 3.12.0 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.55878 78.16358 390510347 762986 183 18 306 28 0.0 Metagenome 3300054960 *Microbiome Permanent Draft Soil microbial communities from various environments and locations in the USA Soil microbial communities from farm land in Prosser, Washington, USA - PRS1_BTM DOE Joint Genome Institute (JGI) 3300054960 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nancy.hess@pnnl.gov Nancy Hess No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.2517 -119.7287 2123227357 3614203 808 55 1388 92 Unrestricted 16.38 Metagenome 3300016646 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Site 228 with 3.0 UM filter J. Craig Venter Institute 3300016646 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater -68.4 78.18278 7.29 20117505 52158 33 0 60 0 0.0 Metagenome 3300001397 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 210-3 deep-072012 DOE Joint Genome Institute (JGI) 3300001397 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 104588010 224553 97 4 132 5 SRX1987244 Unrestricted 0.0 Metagenome 3300035072 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 14_4.5_C_13_2 DOE Joint Genome Institute (JGI) 3300035072 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1866 -2.2146 813596282 1885373 216 7 309 10 SRX8234221 Unrestricted 15.36 Metagenome 3300051378 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - HDCR2D-21 DOE Joint Genome Institute (JGI) 3300051378 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 672594429 1214389 812 66 1383 99 Unrestricted 21.96 Metagenome 2070309008 *Microbiome Permanent Draft Wastewater viral communities from wastewater treatment facility in Singapore Wastewater viral communities from wastewater treatment facility in Singapore - AD-deduplicated data University of Illinois, Urbana-Champaign 2070309008 Metagenome Analysis not assmebled released per JGI data release policy No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Wastewater Dissolved organics (anaerobic) Nutrient removal Unclassified Wastewater 1.332 103.756 91112142 293911 4 0 2 0 0.0 Metagenome 3300011849 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00314 Weill Cornell Medical College 3300011849 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.73 -74.0 34349118 67926 38 1 45 0 SRX822287 0.0 Metagenome 3300022773 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R9 Version 2 University of New South Wales 3300022773 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 107864896 173443 66 1 89 3 0.0 Metagenome 3300026033 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLA_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026033 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.197102 -122.010033 87604917 205350 139 1 260 1 SRX7180771 Unrestricted 0.0 Metagenome 3300032074 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1 DOE Joint Genome Institute (JGI) 3300032074 Metagenome Analysis spades v. 3.12.0 Yes Yes icelab@berkeley.edu Steven Lindow No Environmental Terrestrial Agricultural land Soil Unclassified soil 37.8864 -122.2981 4168909277 9881215 2104 191 3542 333 SRX6411936 Unrestricted 8.05 Metagenome 3300011252 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, permeate Toyama Prefectural University 3300011252 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Unclassified marine 37.36555 137.72861 8.1 108267645 249468 42 9 40 15 0.0 Metagenome 3300005761 *Microbiome Permanent Draft Genome analysis of Scenedesmus quadricauda 10104 and associated bacterial communtity Scenedesmus quadricauda tightly attached associated microbial communities from Germany - MZCH: 10104 HPI Heinrich-Pette-Institut 3300005761 Metagenome Analysis IDBA_UD1.1.1 released per JGI data release policy No Yes wolfgang.streit@uni-hamburg.de Wolfgang Streit No Host-associated Algae Unclassified Green algae Unclassified Scenedesmus quadricauda associated 53.560155 9.859606 80480633 115608 51 1 46 1 0.0 Metagenome 3300001840 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from the Cayman Rise, Cayman Islands Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Shallow Sites - gte1kb - lt4kb 3300001840 Metagenome Analysis IDBA_UD k52-k92 step10 - contigs greater than or equal to 1kb and less than 4kb released by JGI data releasing policy No Yes Gregory Dick, Sunit Jain No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 18.35 -81.85 146151029 204287 82 5 132 4 0.0 Metagenome 3300071143 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone National Park, Wyoming, USA - YELL_001-M-20190821-COMP-DNA1 3300071143 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 19307940 58879 76 12 160 20 0.0 Metagenome 3300048806 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-F1(2) 10-14 DOE Joint Genome Institute (JGI) 3300048806 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0433 518337665 818188 210 2 320 2 Restricted 12.52 Metagenome 3300028486 *Microbiome Permanent Draft Sludge microbial communities from lab bioreactors in Zhejiang University, Hangzhou, China Sludge microbial communities from lab bioreactors in Zhejiang University, Hangzhou, China - A1 Beijing Genomics Institute (BGI) 3300028486 Metagenome Analysis SOAP v. 2.0 released by JGI data releasing policy No Yes gnijuhz6250991@163.com Jing Zhu No Engineered Bioreactor Activated sludge Aerobic Unclassified Sludge 30.29745411 120.09105 723060605 1092313 384 22 596 34 0.0 Metagenome 2019105001 *Microbiome Permanent Draft Canis familiaris fecal microbial communities from the University of Illinois at Urbana-Champaign Canis familiaris fecal microbial communities from University of Illinois at Urbana-Champaign, Illinois, USA - control 1 J. Craig Venter Institute (JCVI) 2019105001 Metagenome Analysis Unknown No Yes sdowd@pathogenresearch.org Scot E. Dowd Yes 20962874 Host-associated Mammals Large intestine Digestive system Fecal Canis familiaris fecal 40.11 -88.2 241070849 678420 55 0 77 0 0.0 Metagenome 3300065594 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 791 in Vulcan, Alberta, Canada - S00JY_0315 Microbiome Insights 3300065594 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 50.2910242 -113.1540896 567612327 807656 164 0 197 0 0.0 Metagenome 3300029047 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 263_12M Beijing Genomics Institute (BGI) 3300029047 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 130040863 174906 114 0 199 0 ERX491036 0.0 Metagenome 3300044714 *Microbiome Permanent Draft Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA - SWaN 13 years plot 5 DOE Joint Genome Institute (JGI) 3300044714 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes luizdomeignoz@gmail.com Luiz Domeignoz Horta No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 42.303 -72.1228 1312111511 2149444 320 51 569 75 SRX15793000 Unrestricted 15.58 Metagenome 3300013260 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100253 University of Pennsylvania 3300013260 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 13781069 35057 25 1 28 0 SRX756648 0.0 Metagenome 3300014616 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01327 Weill Cornell Medical College 3300014616 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.82 -73.87 12099140 16329 9 0 9 0 SRX823267 0.0 Metagenome 3300014549 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS51_0 University of Hohenheim 3300014549 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 105173879 157742 62 0 105 1 0.0 Metagenome 3300026999 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF044 (SPAdes) DOE Joint Genome Institute (JGI) 3300026999 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 77382641 216563 82 7 167 11 SRX2014391 Unrestricted 0.0 Metagenome 2170459012 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO1O1 lysis Rhizosphere grass 454 Life Sciences 2170459012 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.804241 -0.372114 368766651 987640 264 45 464 86 0.0 Metagenome 3300007251 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 158337416 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007251 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 8394080 20369 11 4 20 5 SRX023632, SRX023631 0.0 Metagenome 3300070255 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_009-O-20200914-COMP-DNA1 3300070255 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 10000932 32826 44 13 99 21 0.0 Metagenome 3300013451 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100719 University of Pennsylvania 3300013451 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 2481640 6981 8 3 22 3 SRX756131 0.0 Metagenome 3300011181 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica - Metagenome #681 DOE Joint Genome Institute (JGI) 3300011181 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5602 78.1968 101045660 196072 102 3 190 2 SRX2526867 Unrestricted 0.0 Metagenome 3300048043 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BG2-07_D50 (version 2) DOE Joint Genome Institute (JGI) 3300048043 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3634 19.0475 104425148 175841 63 6 80 11 Restricted 0.0 Metagenome 3300003269 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_08_M0_20 DOE Joint Genome Institute (JGI) 3300003269 Metagenome Analysis Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 101495762 230246 214 16 371 37 SRX2570592 Unrestricted 0.0 Metagenome 3300029967 *Microbiome Permanent Draft Fecal microbial communities from free-living howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from free-living howler monkeys from Sao Paulo Zoo, Brazil - Ind. 3, S5 Reanalysis Center for Advanced Technologies in Genomics, Sao Paulo University 3300029967 Metagenome Analysis metaSPAdes v. 3.12.0 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 84447156 146709 131 8 158 3 0.0 Metagenome 3300046668 *Microbiome Permanent Draft Soil microbial communities from Blodgett Forest Research Station, California, USA Soil microbial communities from Blodgett Forest Research Station, California, USA - BWE201412021H5060 DOE Joint Genome Institute (JGI) 3300046668 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.912 -120.6615 109799105 195678 66 13 150 28 Unrestricted 21.21 Metagenome 3300023104 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L044-104R-1 DOE Joint Genome Institute (JGI) 3300023104 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 655646112 1356048 519 147 683 217 SRX4801454 Unrestricted 11.74 Metagenome 3300012626 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100494 University of Pennsylvania 3300012626 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 23249183 51374 18 0 26 0 SRX756504 0.0 Metagenome 3300042351 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME21Jun2016-rr0774 DOE Joint Genome Institute (JGI) 3300042351 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 652794148 1044781 212 41 297 50 Unrestricted 20.44 Metagenome 3300019852 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Sao Paulo, Brazil - ZCI2 Center for Advanced Technologies in Genomics, Sao Paulo University 3300019852 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Engineered Solid waste Composting Zoo waste Unclassified compost -23.651072 -46.620675 74029485 173321 114 3 162 3 0.0 Metagenome 3300042724 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - M_b18.8 Re-assembly Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042724 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1241 -89.1401 53458234 51825 4 2 6 3 SRX5234785 0.0 Metagenome 3300000301 *Microbiome Permanent Draft Chicken cecum microbial communities from Ireland CECUM_4-1 University College Cork 3300000301 Metagenome Analysis meta-velvet released per JGI data release policy Yes Yes simone.rampelli@unibo.it Simone Rampelli No Host-associated Birds Large intestine Digestive system Ceca Chicken Cecum 51.897783 -8.470613 73086056 130852 377 4 604 7 0.0 Metagenome 3300026141 *Microbiome Permanent Draft Anaerobic reactors microbiome study Activated sludge microbial communities from lab. scaled anaerobic digester in Belvaux, Luxembourg - ACS0-3 University of Luxembourg 3300026141 Metagenome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 49.506216 5.943617 203925347 258600 69 3 215 7 0.0 Metagenome 3300050126 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim2 5-9 DOE Joint Genome Institute (JGI) 3300050126 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.353634 19.04734 550816351 853211 183 22 272 37 Restricted 11.47 Metagenome 3300000599 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 28MAY2007 hypolimnion v3 (version 4) DOE Joint Genome Institute (JGI) 3300000599 Metagenome Analysis released based on JGI ITS No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300026867 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A5-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026867 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 49294249 149565 151 12 340 12 SRX1991272 Unrestricted 0.0 Metagenome 3300071031 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_049-M-20190612-COMP-DNA2 3300071031 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 6511749 20784 30 4 50 8 0.0 Metagenome 3300029899 *Microbiome Permanent Draft Cryoconite microbial communities around the Greenland ice sheet Cryoconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_U-A2a DMAC, Technical University of Denmark 3300029899 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Ice Freshwater Cryoconite Cryconite 65.41 -38.51 255335083 466796 127 23 193 34 SRX2579835 0.0 Metagenome 3300055472 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.2W.6 SIP fraction DOE Joint Genome Institute (JGI) 3300055472 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 260837503 466069 132 5 193 11 Unrestricted 16.8 Metagenome 3300011578 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00445 Weill Cornell Medical College 3300011578 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -73.8 26852161 37269 17 1 31 3 SRX822414 0.0 Metagenome 3300037109 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 C-2-X0 DOE Joint Genome Institute (JGI) 3300037109 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3544 19.048 914224932 1775288 529 9 820 11 SRX8163115 Unrestricted 9.65 Metagenome 3300046615 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere DOE Joint Genome Institute (JGI) 3300046615 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.588 -123.1926 768456249 1374949 359 40 574 61 Unrestricted 17.1 Metagenome 3300021914 *Microbiome Permanent Draft Marine eukaryotic communities from various locations to study complex ecological interactions Marine eukaryotic communities from Monterey Bay, California, United States - M1_20Mar14CPVII9sort6BwellE14 DOE Joint Genome Institute (JGI) 3300021914 Metagenome Analysis spades v. 3.11.1-check Yes Yes twoyke@lbl.gov; azworden@mbari.org Tanja Woyke; Alexandra Worden No Environmental Aquatic Unclassified Marine Unclassified seawater 36.746 -122.0257 54199393 57295 2 2 2 8 Unrestricted 242.63 Metagenome 3300013858 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room gowning area microbial communities from NASA Jet Propulsion Laboratory, California, USA - Floor swab, replicate C SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300013858 Metagenome Analysis SPAdes v3.10.0 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1991 -118.1715 4003538 7048 6 0 9 1 Unrestricted 0.0 Metagenome 3300050672 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_8A1_100318_0845 DOE Joint Genome Institute (JGI) 3300050672 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 644498380 1054369 313 123 447 164 Unrestricted 22.02 Metagenome 3300023080 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L043-104R-2 DOE Joint Genome Institute (JGI) 3300023080 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 358656612 838633 488 104 882 166 SRX4797843 Unrestricted 10.8 Metagenome 3300038792 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-3_at_8-9_cm Genome Quebec 3300038792 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89934 -73.72822 568943332 1490130 792 15 1655 30 0.0 Metagenome 3300015174 *Microbiome Permanent Draft Human fecal microbial communities from infant diaper, Dhaka, Bangladesh Human fecal microbial communities from infant diaper, Dhaka, Bangladesh - DMDT001P Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300015174 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes dhtaft@ucdavis.edu Diana Taft No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant feces 23.8103 90.4125 16294302 22069 20 0 24 0 0.0 Metagenome 3300044554 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TS26 DOE Joint Genome Institute (JGI) 3300044554 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.4139 64595828 88483 74 1 92 3 SRX12658907 Unrestricted 207.0 Metagenome 3300012172 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT366_2 DOE Joint Genome Institute (JGI) 3300012172 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8894 -106.9081 233071025 527022 249 36 533 48 SRX3368477 Unrestricted 0.0 Metagenome 3300006058 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 DOE Joint Genome Institute (JGI) 3300006058 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Host-associated Plants Rhizosphere Roots Soil Populus rhizosphere 35.8444 -83.9599 2514540635 8949073 1595 139 2918 272 SRX2748709, SRX2748708, SRX2748710 Unrestricted 0.0 Metagenome 3300070810 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_003-M-20190311-COMP-DNA1 3300070810 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 1687726 5814 29 4 59 6 0.0 Metagenome 3300046409 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA102-TCB DOE Joint Genome Institute (JGI) 3300046409 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6875 -83.5012 590422376 1488161 436 70 736 112 Unrestricted 8.39 Metagenome 3300014878 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200A_16_10D DOE Joint Genome Institute (JGI) 3300014878 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9224 -106.9518 261182495 596544 271 13 547 33 SRX3780464 Unrestricted 4.89 Metagenome 3300026214 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026214 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Soil 68.6137 -149.3144 223632433 638130 220 35 365 77 SRX2739147 Unrestricted 0.0 Metagenome 3300043574 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 046-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043574 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9208 -106.9509 266729652 699266 392 12 756 20 Unrestricted 7.47 Metagenome 3300009596 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Sandy's Spring West, USA to study Microbial Dark Matter (Phase II) - SSWTFFsm_matched DOE Joint Genome Institute (JGI) 3300009596 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes brian.hedlund@unlv.edu; rstepanauskas@bigelow.org Brian Hedlund; Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 40.653 -119.3749 7.03 78762855 226417 106 2 193 1 SRX2753914 Unrestricted 0.0 Metagenome 3300048131 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_151111.NP1 DOE Joint Genome Institute (JGI) 3300048131 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 784615674 1847428 702 108 1127 152 Unrestricted 11.1 Metagenome 3300025038 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from Cariaco Basin, Caribbean Sea - 24B_WHOI_OMZ_CsCl (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025038 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 10.847 -65.114 64461827 116082 42 0 46 0 SRX7405288 Unrestricted 0.0 Metagenome 3300002477 *Microbiome Permanent Draft Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland, that are sulfate-reducing Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland - cluster4_Rhodospirillaceae 3300002477 Metagenome Analysis Ray, k=41 released by JGI data releasing policy No Yes rizlan.bernier-latmani@epfl.ch Rizlan Bernier-Latmani No Environmental Terrestrial Clay Deep subsurface Unclassified Deep subsurface 47.379 7.1648 7.5-8.5 3141659 3144 0 0 0 0 0.0 Metagenome 3300026889 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 57 (SPAdes) DOE Joint Genome Institute (JGI) 3300026889 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 63210756 148555 69 0 161 0 SRX4341059 Unrestricted 0.0 Metagenome 3300035286 *Microbiome Permanent Draft Extreme environments viral communities from various locations Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 485_3600 DOE Joint Genome Institute (JGI) 3300035286 Metagenome Analysis spades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified filtered seawater 4.0943 -41.4341 236214769 635833 35 13 46 25 SRX7709944 Unrestricted 80.3 Metagenome 2100351016 *Microbiome Permanent Draft Sirex noctilio microbial communities from Hill Creek State Park, Pennsylvania, USA Sirex noctilio microbial communities from Pennsylvania, USA - adult community DOE Joint Genome Institute (JGI) 2100351016 Metagenome Analysis Newbler released based on JGI ITS No Yes gsuen@wisc.edu, currie@bact.wisc.edu Garret Suen, Cameron Currie No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Sirex noctilio 41.803774 -77.192604 177623549 319145 54 17 129 0 Unrestricted 0.0 Metagenome 3300061661 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0293 Microbiome Insights 3300061661 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 29211079 42887 7 1 18 1 0.0 Metagenome 3300006659 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T10 (2) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006659 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 50762654 101320 60 0 87 0 0.0 Metagenome 3300027207 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C49A8_80 (SPAdes) DOE Joint Genome Institute (JGI) 3300027207 Metagenome Analysis spades v. 3.11.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 288326688 418819 106 24 176 31 SRX1990967 Unrestricted 0.0 Metagenome 3300054056 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40 re-annotation DOE Joint Genome Institute (JGI) 3300054056 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 638076976 1146331 266 2 414 5 SRX3960063 0.0 Metagenome 3300014767 *Microbiome Permanent Draft Human fecal microbial commmunities from Fecal Microbiota Transplantation (FMT) for ulcerative colitis - University of Washington Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P788T1 University of Washington 3300014767 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26288277 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 90480455 153064 72 0 133 0 SRX1131766 0.0 Metagenome 3300023102 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S184-509B-5 DOE Joint Genome Institute (JGI) 3300023102 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 382633763 956769 525 24 986 34 SRX4799430 Unrestricted 7.41 Metagenome 3300000677 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 70 DOE Joint Genome Institute (JGI) 3300000677 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 5647097 17194 20 0 44 0 SRX4341348 Unrestricted 0.0 Metagenome 3300042722 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - D_a7.2 Re-assembly Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042722 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1237 -89.1404 66933250 66163 4 2 8 6 SRX5234791 0.0 Metagenome 3300053076 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 soil DOE Joint Genome Institute (JGI) 3300053076 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.58826 -123.192446 6.76 840464937 1519596 231 5 401 10 Unrestricted 17.18 Metagenome 3300016650 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Site 229 with 3.0UM filter J. Craig Venter Institute 3300016650 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater -68.4 78.18278 7.81 23268155 58358 36 0 51 0 0.0 Metagenome 3300027927 *Microbiome Permanent Draft Whole metagenome sequencing of microbial communities exiting in soils from Lucknow, Uttar Pradesh, India Soil microbial communities from Dewa Road, Lucknow, Uttar Pradesh, India - S6 National Bureau of Agriculturally Important Microorganisms, Indian Council of Agricultural Research 3300027927 Metagenome Analysis MetaSPAdes v. 3.10.1 released by JGI data releasing policy No Yes arjun.iari@gmail.com Arjun Singh No Environmental Terrestrial Contaminated Soil Pesticide soil 27.01666667 81.15 958290796 2645576 1463 32 2016 67 0.0 Metagenome 3300025166 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MMD0.2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025166 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 40.83194 2.44806 15606946 42397 36 1 61 4 SRX1981953 Unrestricted 0.0 Metagenome 3300025639 *Microbiome Permanent Draft Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico and Hudson Canyon, USA Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1E Hudson Canyon (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025639 Metagenome Analysis spades v. 3.11.1 Yes Yes mcredmond@uncc.edu Molly C. Redmond No Environmental Aquatic Cold seeps Marine Unclassified Methane seep mesocosm 39.55 -72.4 434152992 765431 228 9 344 9 SRX2754391 Unrestricted 0.0 Metagenome 3300049578 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 DOE Joint Genome Institute (JGI) 3300049578 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.40849 -82.168434 1501490040 2532388 566 16 1011 30 Unrestricted 14.49 Metagenome 3300009420 *Microbiome Permanent Draft Marine microbial communities from western Arctic Ocean Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 DOE Joint Genome Institute (JGI) 3300009420 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh Yes 30271971 Environmental Aquatic Oceanic Marine Unclassified Marine 73.2247 -150.2247 1717609907 3477645 849 346 1529 540 SRX2997165 Unrestricted 0.0 Metagenome 3300009995 *Microbiome Permanent Draft Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_227 metaG DOE Joint Genome Institute (JGI) 3300009995 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes esinger@lbl.gov; twoyke@lbl.gov Esther Singer; Tanja Woyke No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass associated 30.387 -97.7301 137493866 241725 14 82 20 148 SRX3203284 Unrestricted 0.0 Metagenome 3300055474 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.2W.13 SIP fraction DOE Joint Genome Institute (JGI) 3300055474 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 257249962 439339 209 20 332 42 Unrestricted 16.34 Metagenome 3300001285 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 12 DOE Joint Genome Institute (JGI) 3300001285 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 5283393 15941 37 0 56 0 SRX1984823 Unrestricted 0.0 Metagenome 3300029436 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 048_3_10_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029436 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 239244350 328468 344 0 451 0 0.0 Metagenome 3300046087 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_68 DOE Joint Genome Institute (JGI) 3300046087 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9703 -106.997 357915853 915188 1108 18 2215 27 Unrestricted 0.0 Metagenome 3300012174 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT366_2 DOE Joint Genome Institute (JGI) 3300012174 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9228 -106.9515 235978880 533132 229 16 443 28 SRX3368785 Unrestricted 0.0 Metagenome 3300020439 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029) CEA Genoscope 3300020439 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 9.846 80.0607 1163578943 2844413 494 14 833 35 0.0 Metagenome 3300008341 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159247771 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008341 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 88316881 123723 76 0 97 0 0.0 Metagenome 3300050674 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_1B2_100118_1351 DOE Joint Genome Institute (JGI) 3300050674 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 875833943 1426854 329 128 566 186 Unrestricted 22.45 Metagenome 3300004780 *Microbiome Permanent Draft Wetland sediment microbial communities from St. Louis River estuary, Michigan under dissolved organic matter induced mercury methylation Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare1Fresh DOE Joint Genome Institute (JGI) 3300004780 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes diana.nemergut@duke.edu, diana.nemergut@duke.edu.deleted Diana Nemergut No Environmental Aquatic Wetlands Freshwater Sediment Wetland sediment 46.6972164 -92.3279105 850144463 2694550 1060 58 2612 103 SRX2775255 Unrestricted 0.0 Metagenome 3300029108 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 332_12M Beijing Genomics Institute (BGI) 3300029108 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 102985807 125176 71 0 126 0 ERX491079 0.0 Metagenome 3300038794 *Microbiome Draft Microbial communities from sediments and seawater samples from Gulf of Mexico Marine sediment microbial communities from Coatzacoalco region, Gulf of Mexico, Mexico - C10_station Ensenada Center for Scientific Research and Higher Education, Baja California 3300038794 Metagenome Analysis megahit v. 1.1.2 released by JGI data releasing policy Yes Yes metagenomics.group@gmail.com Asuncion Lago No Environmental Aquatic Sediment Marine Unclassified Marine Sediments 19.1713 -93.3 130915056 320775 133 2 283 6 0.0 Metagenome 3300044552 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TS2 DOE Joint Genome Institute (JGI) 3300044552 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.4139 135361451 224190 185 2 241 4 SRX12657374 Unrestricted 96.76 Metagenome 3300028705 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115 DOE Joint Genome Institute (JGI) 3300028705 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.91721605 -106.9559947 510491311 1412998 484 14 917 30 SRX5354613 Unrestricted 9.94 Metagenome 3300015172 *Microbiome Permanent Draft Human fecal microbial communities from infant diaper, Dhaka, Bangladesh Human fecal microbial communities from infant diaper, Dhaka, Bangladesh - DMDT001G Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300015172 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes dhtaft@ucdavis.edu Diana Taft No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant feces 23.8103 90.4125 6196901 8948 12 4 15 5 0.0 Metagenome 3300049097 *Microbiome Permanent Draft Marine sediment microbial communities from Pacific Ocean, California, USA Marine sediment microbial communities from Pacific Ocean, California, USA - SSC_C1_L1 DOE Joint Genome Institute (JGI) 3300049097 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pjensen@ucsd.edu Paul r. Jensen No Environmental Aquatic Oceanic Marine Sediment Marine sediment 32.71 -117.38 497468081 858617 222 5 386 6 Unrestricted 18.35 Metagenome 3300006985 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada T0 (1) T65 (live) enrichments of Methanogenic microbial communities using Athabascan oil sands Shell Corporation 3300006985 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 29876112 62744 27 0 53 0 0.0 Metagenome 3300026778 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - site 2 bottle 7 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026778 Metagenome Analysis spades v. 3.11.1 Yes Yes blumerschuette@oakland.edu; rmkelly@ncsu.edu Sara Blumer-Schuette; Robert Kelly No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6102 -110.4387 11952922 13225 23 0 20 0 SRX2554488 Unrestricted 0.0 Metagenome 3300069209 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Guanica State Forest and Biosphere Reserve, Puerto Rico - GUAN_006-M-20210922-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069209 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tropical forest Soil Unclassified Terrestrial soil 17.963818 -66.875667 2359653116 5515222 1022 12 1922 19 0.0 Metagenome 3300014789 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS50_18 University of Hohenheim 3300014789 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 117865759 200512 81 0 135 0 0.0 Metagenome 3300026212 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV201 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026212 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart Yes 27487207 Environmental Aquatic Oceanic Marine Unclassified Marine 281419049 566128 175 4 301 6 SRX2782416 Unrestricted 0.0 Metagenome 3300032286 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime Ecozone, Canada - Lake 07-051 Genome Quebec 3300032286 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.949699 -67.537685 704896575 1406847 423 97 643 182 0.0 Metagenome 3300043572 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains ecozone, Canada - Lake 08-170 Genome Quebec 3300043572 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.740317 -78.912505 913912246 2058116 367 77 616 130 0.0 Metagenome 3300033476 *Microbiome Permanent Draft Hot spring microbial communities from different geyser basins in Yellowstone National Park, WY, United States Hot spring water microbial communities from Norris Geyser Basin, Yellowstone National Park, WY, United States - NOR.RB_P DOE Joint Genome Institute (JGI) 3300033476 Metagenome Analysis spades v. 3.13.0 Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Unclassified Thermal springs Unclassified hot spring water 44.7265 -110.709 43619067 94908 64 1 90 2 SRX7584809 Unrestricted 1390.59 Metagenome 3300049849 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_A_0_drought DOE Joint Genome Institute (JGI) 3300049849 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 21025730 54535 117 6 247 6 Unrestricted 0.0 Metagenome 3300025773 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29May09 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025773 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 90474241 190766 61 32 89 51 SRX2565211 Unrestricted 0.0 Metagenome 3300007184 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 763536994 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007184 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 156800711 207185 108 0 179 1 0.0 Metagenome 3300006746 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 823052294 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006746 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 108332215 164610 96 0 128 0 0.0 Metagenome 3300035074 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 18_7.5_C_13_3 DOE Joint Genome Institute (JGI) 3300035074 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1863 -2.2145 831764577 1996949 187 1 274 2 SRX8234244 Unrestricted 9.18 Metagenome 3300009885 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY13 University of New South Wales 3300009885 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 27616659 47814 21 0 38 1 0.0 Metagenome 3300053151 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere DOE Joint Genome Institute (JGI) 3300053151 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.588085 -123.194044 609433379 1310466 349 65 590 129 Unrestricted 11.57 Metagenome 3300020585 *Microbiome Permanent Draft Marine microbial communities in enrichment culture from Nagahama-bay, E2 Enriched microbial communities from marine sediment in Nagahama bay, Kagoshima, Japan - E2 Japan Agency for Marine-Earth Science and Technology 3300020585 Metagenome Analysis SPAdes (ver. 3.9.0) released by JGI data releasing policy No Yes makita@jamstec.go.jp Hiroko Makita No Environmental Aquatic Oceanic Marine Sediment Sediment 30.78094 130.279249 18594815 25221 8 0 10 0 0.0 Metagenome 3300002761 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-D DOE Joint Genome Institute (JGI) 3300002761 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.33 420611 1413 29 3 47 5 SRX1991428 Unrestricted 0.0 Metagenome 3300040795 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Salins du Lion, Vitrolles, France - D325 Genopole Toulouse Midi-Pyrenees 3300040795 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.45 5.2264 383096031 743822 334 15 630 30 0.0 Metagenome 3300049252 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA14 DOE Joint Genome Institute (JGI) 3300049252 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 399638002 962511 420 5 701 8 Unrestricted 7.69 Metagenome 3300057169 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2021-2012 DOE Joint Genome Institute (JGI) 3300057169 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.76265 -83.329 686550666 1421999 496 165 758 251 Unrestricted 20.18 Metagenome 3300011254 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02 Toyama Prefectural University 3300011254 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Unclassified marine 36.97018 137.37008 7.7 113877376 294349 55 7 28 22 0.0 Metagenome 3300040003 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 050B_R1 University of Maryland 3300040003 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.97074722 25.70374444 16287836 24542 30 5 38 5 0.0 Metagenome 3300031197 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1 DOE Joint Genome Institute (JGI) 3300031197 Metagenome Analysis spades v. 3.12.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sandy soil 49.2598372 -123.2459363 542383748 1406145 867 27 1499 45 SRX5338654 Unrestricted 8.26 Metagenome 3300002053 *Microbiome Permanent Draft Marine sediment microbial communities from White Oak River estuary, North Carolina Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR_SMTZ DOE Joint Genome Institute (JGI) 3300002053 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date No Yes acidophile@gmail.com Brett Baker Yes 26824177 Environmental Aquatic Intertidal zone Marine Sediment Marine sediment 34.6478111 -77.1112083 799007063 857807 204 10 193 0 0.0 Metagenome 3300006895 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Final time point T65 (2) (live) benzoate enrichments of Methanogenic microbial communities using Athabasca oil sands as inoculum Shell Corporation 3300006895 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 51620111 73926 54 0 89 0 0.0 Metagenome 3300013703 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00420 Weill Cornell Medical College 3300013703 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -74.0 18841348 28257 22 0 21 0 SRX822389 0.0 Metagenome 7000000543 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 158944319 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000543 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 76268879 145032 0 0 0 0 0.0 Metagenome 2170459014 *Microbiome Permanent Draft Switchgrass, maize and mischanthus litter microbial communities from University of Illinois Energy Farm, Urbana, IL Litter degradation PV2 University of Illinois, Urbana-Champaign 2170459014 Metagenome Analysis released per JGI data release policy No Yes lixz@illinois.edu Xiangzhen Li No Engineered Solid waste Composting Grass Unclassified Switchgrass, maize and mischanthus litter 40.1097 -88.2041 195575468 504706 204 12 378 45 0.0 Metagenome 3300020357 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000686 (ERX555950-ERR598956) CEA Genoscope 3300020357 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -8.896 -140.2861 385270645 992854 339 17 684 36 0.0 Metagenome 3300065592 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 791 in Vulcan, Alberta, Canada - S00JY_0096 Microbiome Insights 3300065592 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 50.2910242 -113.1540896 231802076 350550 99 1 140 4 0.0 Metagenome 3300044712 *Microbiome Permanent Draft Rhizosphere and rhizoplane microbial communities from rice plants in Newark, Delaware, United States Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED DOE Joint Genome Institute (JGI) 3300044712 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes angelias@udel.edu Angelia Seyfferth No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 39.6 -75.8 3415743187 5059222 1535 62 2432 115 Unrestricted 16.01 Metagenome 3300042663 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A27 University of California, Davis 3300042663 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 218209121 626847 333 7 614 10 0.0 Metagenome 3300049181 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - H15_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049181 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 395237078 836048 464 18 809 29 Unrestricted 0.0 Metagenome 3300037491 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_4 DOE Joint Genome Institute (JGI) 3300037491 Metagenome Analysis metaspades v. 3.13.0 Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 2404123679 3807272 323 14 593 27 SRX9140446 Unrestricted 13.06 Metagenome 3300043258 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_3 (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043258 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 174878593 299785 57 3 114 4 SRX9140423 Unrestricted 92.27 Metagenome 3300000842 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from University of Liverpool Illum_XT2_MetaVelvet University of Liverpool 3300000842 Metagenome Analysis Meta-Velvet released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 1001961 4324 34 0 68 0 0.0 Metagenome 3300042929 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-327 Genome Quebec 3300042929 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.856847 -119.612241 1024901099 2208783 304 74 563 134 0.0 Metagenome 3300028732 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N3_4 DOE Joint Genome Institute (JGI) 3300028732 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 391815151 966357 168 4 266 15 SRX5356666 Unrestricted 0.0 Metagenome 3300042209 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D56_2 DOE Joint Genome Institute (JGI) 3300042209 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 178837109 271671 144 13 185 6 Unrestricted 60.36 Metagenome 3300022414 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1OPP2 JM95 AGRF 3300022414 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 49721499 86627 42 2 86 2 0.0 Metagenome 3300000259 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_J_08_P26_500 DOE Joint Genome Institute (JGI) 3300000259 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 50.0 -145.0 117987648 302454 104 32 198 37 Unrestricted 0.0 Metagenome 3300051392 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - HDCcR3D-14 DOE Joint Genome Institute (JGI) 3300051392 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 1049157352 1888634 1031 44 1576 75 Unrestricted 21.87 Metagenome 3300025412 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_19_10 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025412 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 143426595 312891 112 13 206 22 SRX3005979 Unrestricted 0.0 Metagenome 3300071128 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_003-O-20170802-COMP-DNA1 3300071128 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 17161600 55695 99 3 173 3 0.0 Metagenome 3300029542 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P040V1 Beijing Genomics Institute (BGI) 3300029542 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 151261104 192815 110 0 229 0 0.0 Metagenome 3300043453 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-419 Genome Quebec 3300043453 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 52.722421 -105.20894 1743060841 3923428 609 236 1088 412 0.0 Metagenome 3300061626 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Yellowstone NP, Wyoming, USA - YELL_048-M-20210707-comp-1 DOE Joint Genome Institute (JGI) 3300061626 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 44.951273 -110.536649 747543128 1371663 208 22 365 38 Unrestricted 20.3 Metagenome 3300038379 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from Nevada, United States - King's Pool (KP_S1) DOE Joint Genome Institute (JGI) 3300038379 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified Desert spring 36.4015 -116.2738 7.46 3211828190 4536784 1137 46 1721 52 SRX9167238 Unrestricted 14.98 Metagenome 3300018041 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300018041 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1471616336 3224960 1111 88 1868 129 SRX4081053 Unrestricted 21.45 Metagenome 3300020612 *Microbiome Permanent Draft Deep subsurface rock core microbial communities from Deccan traps, Ukhalu, Maharashtra, India Deep subsurface rock core microbial communities from Deccan traps, Ukhalu, Maharashtra, India - U6_55 Marine Biological Laboratory 3300020612 Metagenome Analysis Spades released by JGI data releasing policy No Yes avishekdutta14@gmail.com; psar@hijli.iitkgp.ernet.in Avishek Dutta; Pinaki Sar No Environmental Terrestrial Rock Deep subsurface Unclassified Deep subsurface rock core 17.125867 73.869133 890642536 2166600 246 35 541 74 0.0 Metagenome 3300007708 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02 DOE Joint Genome Institute (JGI) 3300007708 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2342 -123.9167 353191883 745345 354 27 588 50 SRX2753605 Unrestricted 6.41 Metagenome 3300046742 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_180919.NP2 DOE Joint Genome Institute (JGI) 3300046742 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 627520056 1324113 497 87 747 147 Unrestricted 10.06 Metagenome 3300046360 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_20 DOE Joint Genome Institute (JGI) 3300046360 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9703 -106.997 254128430 816015 1041 8 2039 16 Restricted 0.0 Metagenome 3300014982 *Microbiome Permanent Draft Danish lakes Microbial communities Depth profiles Lake Almind and Hund Freshwater microbial communities from Lake Almind, Silkeborg, Region Midtjylland, Denmark - ALS_03.08.12_17m metaSPAdes assemblies Odense University Hospital 3300014982 Metagenome Analysis metaSPAdes 3.7.1 released by JGI data releasing policy Yes Yes atreusch@biology.sdu.dk Alexander Treusch No Environmental Aquatic Lake Freshwater Unclassified Freshwater 56.148 9.546 6.9 3410636 13869 6 2 12 7 0.0 Metagenome 3300025121 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection D1 (SPAdes) DOE Joint Genome Institute (JGI) 3300025121 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 27774985 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.534762 -107.782602 484751886 841126 675 5 1016 14 SRX2233338, SRX1085370 Unrestricted 0.0 Metagenome 3300001977 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5 DOE Joint Genome Institute (JGI) 3300001977 Metagenome Analysis Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 229366434 678307 663 32 1148 43 SRX2554619 Unrestricted 0.0 Metagenome 3300044473 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal system in Merced County, California, USA - SNEL13-9-12-19 DOE Joint Genome Institute (JGI) 3300044473 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.4777 -120.5838 648078082 1633016 703 53 1150 91 Restricted 7.11 Metagenome 3300023548 *Microbiome Permanent Draft Hydrothermal Fe-rich Mat Reference Genomes Hydrothermal Fe-rich mat microbial community from Loihi Seamount, Hawaii, USA - 677-SSYellow University of Delaware 3300023548 Metagenome Analysis metaSPAdes v. 3.10.0 Metagenomes associated with bioRxiv doi:10.1101/722066 Yes Yes mcallis@uw.edu Sean McAllister No Environmental Aquatic Hydrothermal vents Marine Microbial mats Hydrothermal Fe-rich mat 18.905558 -155.256977 272241056 402483 172 1 210 2 0.0 Metagenome 3300044294 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_50m_2014 DOE Joint Genome Institute (JGI) 3300044294 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 412305226 774640 219 17 383 30 Unrestricted 37.11 Metagenome 3300048028 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_200303.NP1 DOE Joint Genome Institute (JGI) 3300048028 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 694345084 1534540 437 129 634 212 Unrestricted 12.75 Metagenome 3300010868 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction) DOE Joint Genome Institute (JGI) 3300010868 Metagenome Analysis metalrec/blasr v. metalrec version 1.0.2/blasr 1.3.1 Yes Yes cpan@ou.edu Chongle Pan No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 9.1086 -79.8436 426204759 847783 391 1 539 18 SRX4807071, SRX4807072, SRX4807073, SRX4807074, SRX4807075 Unrestricted 0.0 Metagenome 3300055498 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.1W.13 SIP fraction DOE Joint Genome Institute (JGI) 3300055498 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 167488234 290359 142 16 255 29 Unrestricted 17.43 Metagenome 3300049594 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Sep2016-rr0264 (version 2) DOE Joint Genome Institute (JGI) 3300049594 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 641097900 996955 322 30 455 64 Unrestricted 0.0 Metagenome 3300036939 *Microbiome Permanent Draft Biological soil crust microbial communities from Mojave Desert, California, United States Biological soil crust microbial communities from Mojave Desert, California, United States - LAC_S3 DOE Joint Genome Institute (JGI) 3300036939 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erik@olemiss.edu Erik Hom No Environmental Terrestrial Soil crust Soil Biological soil crust 34.1758 -115.3866 1048211186 1578457 477 15 693 33 SRX8380707 Unrestricted 22.64 Metagenome 3300029784 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 045_3_11_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029784 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 232469459 308546 288 0 355 0 0.0 Metagenome 3300021318 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen5, Rep 3 DOE Joint Genome Institute (JGI) 3300021318 Metagenome Analysis spades v. 3.11.1-check Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4149 -119.841 242161454 307469 330 1 341 2 SRX4037382 Unrestricted 102.28 Metagenome 3300039083 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog78 BILS 3300039083 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 9660772 24692 20 2 16 6 ERX1594900 0.0 Metagenome 3300011592 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00296 Weill Cornell Medical College 3300011592 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -74.0 24991354 38052 22 0 32 0 SRX822269 0.0 Metagenome 3300012353 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG DOE Joint Genome Institute (JGI) 3300012353 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.5673 -123.4758 1903318620 3620314 1135 41 2202 70 SRX3372696 Unrestricted 0.0 Metagenome 3300021365 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1 DOE Joint Genome Institute (JGI) 3300021365 Metagenome Analysis spades v. 3.11.1-check Yes Yes hteeling@mpi-bremen.de Hanno Teeling No Environmental Aquatic Epipelagic Marine Unclassified seawater 54.1841 7.9 968072290 1918256 551 236 768 345 SRX3989312 Unrestricted 28.53 Metagenome 3300027683 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027683 Metagenome Analysis spades v. 3.11.1 Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0956 -99.1001 464156592 1033136 444 35 811 64 SRX2753777 Unrestricted 0.0 Metagenome 3300070376 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_002-O-20170801-COMP-DNA2 3300070376 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 96803045 268424 149 38 274 59 0.0 Metagenome 3300030313 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from adenoma patient in Toronto, Canada - MG100206 University of Michigan 3300030313 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 43.65 -79.38 28157913 52402 60 0 88 0 0.0 Metagenome 3300005800 *Microbiome Permanent Draft Sediment microbial communities of hot springs in Rotorua, New Zealand Sediment microbial communities of hot springs in Rotorua, New Zealand - Tikitere hot spring, NZ13 Oak Ridge National Laboratory 3300005800 Metagenome Analysis IDBA_UD v. 1.1.0 released per JGI data release policy No Yes bwar@pdx.edu Anna-Louise Reysenbach No Environmental Aquatic Sediment Thermal springs Unclassified thermal hot spring -38.0631325 176.360798 6 195583763 381788 140 0 146 1 0.0 Metagenome 3300021559 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M DOE Joint Genome Institute (JGI) 3300021559 Metagenome Analysis spades v. 3.11.1-check Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 3208666025 6584659 899 58 1536 95 SRX4030355 Unrestricted 10.52 Metagenome 3300044919 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_6_F DOE Joint Genome Institute (JGI) 3300044919 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 210030049 238873 121 1 159 2 Unrestricted 115.2 Metagenome 3300003395 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SN DOE Joint Genome Institute (JGI) 3300003395 Metagenome Analysis Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 270351194 604986 249 35 402 67 SRX2565073, SRX2565074, SRX2565075 Unrestricted 0.0 Metagenome 3300024242 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 91D DOE Joint Genome Institute (JGI) 3300024242 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 212480269 522465 177 20 331 40 SRX4474304 Unrestricted 18.8 Metagenome 3300004088 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/10/14 0.8 um filter DOE Joint Genome Institute (JGI) 3300004088 Metagenome Analysis MEGAHIT v. 0.2.0 revert back to private per Christa Yes Yes jbanfield@berkeley.edu, jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield, Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 658011312 1501836 1204 62 1881 89 SRX3348117 Unrestricted 0.0 Metagenome 3300034220 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 17HMC DOE Joint Genome Institute (JGI) 3300034220 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological hypolithic biocrust 34.3778 -117.6098 377634642 871372 599 44 1012 71 SRX7615740 Unrestricted 9.06 Metagenome 3300030101 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_111 - TARA_R100000654 CEA Genoscope 3300030101 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -16.9601 -100.6335 155007461 301864 25 0 41 0 0.0 Metagenome 3300014892 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01220 Weill Cornell Medical College 3300014892 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.86 -73.89 13019631 20649 9 0 25 0 SRX823175 0.0 Metagenome 2119805003 *Microbiome Permanent Draft Lab culture microbial communities from Oak Ridge National Lab, USA Sample 620 Oak Ridge National Laboratory 2119805003 Metagenome Analysis Not assembled released per JGI data release policy No Yes podarm@ornl.gov Mircea Podar Yes 23387867 Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Lab culture 35.933333 84.316667 65687556 177395 163 0 348 0 0.0 Metagenome 3300031239 *Microbiome Permanent Draft Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG DOE Joint Genome Institute (JGI) 3300031239 Metagenome Analysis spades v. 3.12.0 Yes Yes rbneum@uw.edu Rebecca Neumann No Host-associated Plants Rhizosphere Roots Soil rhizosphere 47.6516 -122.3045 993801437 2430919 770 8 1252 29 SRX5346105 Unrestricted 8.24 Metagenome 3300026794 *Microbiome Permanent Draft Thawing permafrost microbial communities from the Arctic, studying carbon transformations Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812E2M (version 2) DOE Joint Genome Institute (JGI) 3300026794 Metagenome Analysis spades v. 3.11.1 Yes Yes rich.270@osu.edu Virginia Rich Yes 30013118 Environmental Terrestrial Wetlands Soil Permafrost Thawing permafrost 68.3533 19.0466 13213295 50388 9 0 15 4 SRX2774888 Unrestricted 0.0 Metagenome 3300070595 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_004-M-20190619-COMP-DNA1 Battelle Memorial Institute 3300070595 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 45.822941 -121.998707 5.37-5.53 26268187 80190 63 9 129 14 0.0 Metagenome 3300051670 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Schonbrunner Wald, Bavaria, Germany - BW_TH_029D DOE Joint Genome Institute (JGI) 3300051670 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.904182 13.562678 1260060344 2864613 471 40 876 83 Unrestricted 9.35 Metagenome 3300038778 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog54 BILS 3300038778 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 3013946 7953 9 1 13 1 ERX1594876 0.0 Metagenome 3300022730 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU2 DOE Joint Genome Institute (JGI) 3300022730 Metagenome Analysis spades v. 3.11.1-check Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Host-associated Plants Rhizosphere Roots Unclassified rhizosphere 49.044 13.617 41540914 107918 73 21 139 29 SRX4456676 Unrestricted 9.03 Metagenome 3300039175 *Microbiome Finished Marine algae associated bacterial community from Sydney, Australia Marine algae associated bacterial community from Sydney, Australia - Ulva australis_3R2 Ramaciotti Centre for Genomics 3300039175 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes j.nappi@unsw.edu.au Jadranka Nappi No Host-associated Algae Unclassified Unclassified Unclassified Marine -33.990304 151.231529 491263218 681121 98 11 194 18 0.0 Metagenome 3300034900 *Microbiome Permanent Draft Understanding the reciprocal impacts of modified plant cell wall and associated microbiome Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R1 DOE Joint Genome Institute (JGI) 3300034900 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kalluriudayc@ornl.gov Udaya C. Kalluri No Host-associated Plants Stem Phyllosphere Wood/Secondary xylem xylem 32.1348 -81.9657 496526422 526741 88 283 127 130 SRX7584201, SRX7584200 Unrestricted 0.0 Metagenome 3300002726 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A2-10 DOE Joint Genome Institute (JGI) 3300002726 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 414486 1426 21 0 42 0 SRX1991117 Unrestricted 0.0 Metagenome 2022920016 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP15 Mushroom Spring v2 (version 2) DOE Joint Genome Institute (JGI) 2022920016 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23761787 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.538694 -110.797972 8.2 32326855 58724 415 0 45 0 Unrestricted 0.0 Metagenome 3300007309 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159247771 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007309 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 50772469 96989 39 0 64 0 0.0 Metagenome 3300037874 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site2_nosalt_MVIII_1 DOE Joint Genome Institute (JGI) 3300037874 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Tidal flats microbial mat 20.7452 58.6625 300642639 645173 154 1 231 0 SRX9169876 Unrestricted 13.18 Metagenome 3300012198 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG DOE Joint Genome Institute (JGI) 3300012198 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.5673 -123.4758 2178562712 4572190 1535 73 2967 136 SRX3372678 Unrestricted 0.0 Metagenome 3300026070 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailB_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026070 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.107536 -121.649704 84972504 225499 189 8 360 8 SRX7188926 Unrestricted 0.0 Metagenome 3300001856 *Microbiome Permanent Draft Trichloroethene dechlorinating bioreactor microbial communities from Berkeley, California, USA Trichloroethene dechlorinating bioreactor microbial communities from Berkeley, California, USA - LACBS007A 3300001856 Metagenome Analysis released by JGI data releasing policy No Yes benstenuit@gmail.com Benoit stenuit, Ben A. Stenuit No Engineered Bioremediation Chloroethene Tetrachloroethylene and derivatives Bioreactor Trichloroethene dechlorinating bioreactor 37.87 -122.26 10085198 23309 0 0 0 0 0.0 Metagenome 3300001504 *Microbiome Permanent Draft Human axilla skin microbial communities from the University of Liverpool, UK Human axilla skin microbial communities from the University of Liverpool, UK - AX17 3300001504 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Host-associated Mammals: Human Skin Integumentary system Axilla/Armpit Human axilla skin 53.3484 -3.009 17710490 31435 39 0 71 0 0.0 Metagenome 3300009639 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_13_40 DOE Joint Genome Institute (JGI) 3300009639 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 423013665 746759 209 4 337 4 SRX3003644 Unrestricted 0.0 Metagenome 3300009166 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015 DOE Joint Genome Institute (JGI) 3300009166 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wilkins.231@osu.edu, mike.wilkins@colostate.edu Michael Wilkins No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0991 -99.1044 1445217821 2844859 1023 13 1837 22 SRX2753782 Unrestricted 0.0 Metagenome 2012990007 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring microbial communities from Beowulf East Transect D, Yellowstone National Park, USA - YSTONE2 (BED) 2012990007 Metagenome Analysis released per Ryan Jennings No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 26913020 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.731451 -110.7113131 9919326 12044 0 0 0 0 0.0 Metagenome 3300025995 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_CordA_D2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025995 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.13147 -122.265465 148446111 316449 201 0 349 1 SRX7146199 Unrestricted 0.0 Metagenome 3300025420 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH08Aug08 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025420 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 149952801 309571 124 25 212 32 SRX2565419 Unrestricted 0.0 Metagenome 7000000717 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 158337416 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000717 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 29890 37 0 0 0 0 SRX022972, SRX022973 0.0 Metagenome 3300031749 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Extremophilic microbial mat communities from Washburn Hot Springs, YNP, Wyoming, USA - WHS_1_MG DOE Joint Genome Institute (JGI) 3300031749 Metagenome Analysis spades v. 3.12.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified hot spring microbial mat 44.376 -110.69 1094080569 1758834 839 20 1064 29 SRX6412950 Unrestricted 48.65 Metagenome 3300050000 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume viral communities from North Pacific Ocean - CTD-AT42-06-002-1000m-0.03-B v DOE Joint Genome Institute (JGI) 3300050000 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 8.39977 -104.9807 81907215 234323 49 11 75 9 Restricted 84.76 Metagenome 3300000187 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 53 01/11/11 100m DOE Joint Genome Institute (JGI) 3300000187 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 134562114 283252 128 8 222 13 Unrestricted 0.0 Metagenome 3300005436 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG DOE Joint Genome Institute (JGI) 3300005436 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.4774 -85.451 5254297877 13796916 3100 199 5270 368 SRX2745054 Unrestricted 0.0 Metagenome 3300012890 *Microbiome Permanent Draft Solar panel surface microbial communities from Lawrence Berkeley National Laboratory, California, USA Solar panel surface microbial communities from Lawrence Berkeley National Laboratory, California, USA - M DOE Joint Genome Institute (JGI) 3300012890 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes trnorthen@lbl.gov Trent Northen No Engineered Built environment Unclassified Solar panel Unclassified solar cell surface 37.876387 -122.246777 640755331 1130951 477 651 554 1196 SRX3900394 Unrestricted 0.0 Metagenome 3300022240 *Microbiome Permanent Draft Aerobic methanotrophic bioreactor microbial communities at MBL, Massachusetts, USA Aerobic methanotrophic bioreactor microbial communities at MBL, Massachusetts USA - Cycled 2 individual assembly Marine Biological Laboratory 3300022240 Metagenome Analysis MegaHit v.1.0.6 released by JGI data releasing policy No Yes nuria.fgonzalez@gmail.com Nuria Fernandez Gonzalez No Engineered Bioreactor Unclassified Aerobic Unclassified Bioreactor 41.5265 -70.6731 130952095 144936 45 6 59 8 0.0 Metagenome 3300032222 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime Ecozone, Canada - Lake 07-007 Genome Quebec 3300032222 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.799331 -64.206828 253438623 522168 144 55 262 100 0.0 Metagenome 3300026456 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T-25.r2 DOE Joint Genome Institute (JGI) 3300026456 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 206298791 375165 143 28 223 37 SRX4550060, SRX7705821 Unrestricted 0.0 Metagenome 3300038604 *Microbiome Permanent Draft Oyster larvae and tank water microbial communities from oyster tank in Dauphin Island, Alabama, USA Water microbial communities from oyster tank in Dauphin Island, Alabama, USA - 114W U.S. Food and Drug Administration 3300038604 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Aquaculture Unclassified Water 30.25 -88.11 10050987 22094 26 0 52 0 0.0 Metagenome 3300008716 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 861967750 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008716 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 147811194 188596 113 0 166 0 0.0 Metagenome 3300035224 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P4_June_2010_10m DOE Joint Genome Institute (JGI) 3300035224 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 48.65 -126.6666 707923774 1599925 368 60 571 101 SRX8188834 Unrestricted 13.45 Metagenome 3300040973 *Microbiome Permanent Draft Mine wastewater microbial communities from active nickel and copper mine in Ontario, Canada Mine wastewater microbial communities from active nickel and copper mine in Ontario, Canada - Enrichment_1 Banfield Lab, University of California, Berkeley 3300040973 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Mine water Industrial wastewater Unclassified mine wastewater 46.983333 -81.533333 21060542 26173 9 0 17 3 0.0 Metagenome 3300037361 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 E2 1-5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037361 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0468 740630044 1756041 627 16 1150 14 SRX4415321, SRX8127835 Unrestricted 0.0 Metagenome 3300027721 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027721 Metagenome Analysis spades v. 3.11.1 Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0956 -99.1001 566662059 1288573 513 31 830 60 SRX2753778 Unrestricted 0.0 Metagenome 3300012684 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06) DOE Joint Genome Institute (JGI) 3300012684 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.0526 163.748 2029005818 4333264 1363 4 2286 9 SRX3369487 Unrestricted 0.0 Metagenome 3300027354 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage D2F08 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027354 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 39293849 47423 38 0 38 0 SRX2740055 Unrestricted 0.0 Metagenome 3300052660 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Photosynthetic mat viral communities from Octopus Spring, YNP, Wyoming, United States - OS20090729 t14a DOE Joint Genome Institute (JGI) 3300052660 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified hot spring phototrophic mat 44.53408 -110.7979 14824690 17306 3 0 5 0 Unrestricted 1319.07 Metagenome 3300042786 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_12_3 NMDC pilot DOE Joint Genome Institute (JGI) 3300042786 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 8872701 10221 13 0 22 0 SRX2924865 0.0 Metagenome 3300033518 *Microbiome Permanent Draft Sinkhole microbial mat communities from Lake Huron, Michigan, USA Sinkhole microbial mat communities from Lake Huron, Michigan, USA - SG0317 University of Michigan 3300033518 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy Yes Yes sgrim01@gmail.com Sharon Grim No Environmental Aquatic Sinkhole Freshwater Unclassified microbial mat 45.19843 -83.32721 314336480 392437 104 8 147 10 0.0 Metagenome 3300029477 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001885-35 Beijing Genomics Institute (BGI) 3300029477 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 160134936 198082 149 1 207 0 0.0 Metagenome 3300014041 *Microbiome Permanent Draft Coral microbial communities from home aquarium in Belgium and Reunion Island, France Coral microbial communities from a home aquarium in Belgium - PD-TF-control B University of Mons 3300014041 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Invertebrates Coral Cnidaria Unclassified Coral tissue 50.45 3.93 204779520 431921 5 7 8 4 SRX542347 0.0 Metagenome 3300015682 *Microbiome Permanent Draft Microbial communities associated with sugarcane Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Universidade Estadual de Campinas 3300015682 Metagenome Analysis SPADES released by JGI data releasing policy No Yes scs.rafael@gmail.com Rafael Souza No Host-associated Plants Rhizosphere Roots Unclassified rizhosphere -22.8187222 -47.05896667 5731958 5098 1 0 2 0 0.0 Metagenome 3300034379 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Leptogorgia sarmentosa from Algarve, Portugal - LS08H Molecular Research LP (MR DNA) 3300034379 Metagenome Analysis Metawrap workflow v. 1.0.8 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 56812749 62756 6 1 6 6 0.0 Metagenome 3300004804 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0M DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300004804 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu, tmcmahon@engr.wisc.edu; shaomei.he@gmail.com Katherine McMahon, Katherine McMahon; Shaomei He No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 580336962 1420954 498 131 783 176 SRX2518389 Unrestricted 0.0 Metagenome 3300010160 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG DOE Joint Genome Institute (JGI) 3300010160 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 45.4091 -72.0994 1051522821 1936828 575 87 886 132 SRX2524547 Unrestricted 0.0 Metagenome 3300050184 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water microbial communities from Sandhills, Nebraska, United States - NSL_Island_2017_MMG DOE Joint Genome Institute (JGI) 3300050184 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.73469 -102.41001 1918915869 3035601 526 26 815 32 Unrestricted 19.17 Metagenome 3300033565 *Microbiome Permanent Draft Columbia Riverbed POM Degredation Experiment Lab enriched sediment microbial communities from the Columbia River near Richland, WA, USA - CRF+POM N2 University of Wisconsin, Madison 3300033565 Metagenome Analysis Metaspades v. 3.13.0 released by JGI data releasing policy Yes Yes nstern2@wisc.edu Noah Stern No Environmental Aquatic Sediment Freshwater Unclassified Sediment 46.28045 -119.27368 883877432 1765756 433 14 613 22 0.0 Metagenome 3300006524 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158479027 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006524 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 154100708 204228 106 0 137 0 0.0 Metagenome 3300030642 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from healthy individual in Ann Arbor, USA - MG100169 University of Michigan 3300030642 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 42.28 -83.74 12583746 26066 41 0 71 0 0.0 Metagenome 3300014961 *Microbiome Permanent Draft Wastewater microbial communities from medical facility sewage samples near Freiburg, Germany Wastewater microbial communities from medical facility sewage samples near Freiburg, Germany - C1747 University of Freiburg 3300014961 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 48.0 8.0 196301522 359943 117 1 238 9 0.0 Metagenome 3300000169 *Microbiome Draft Feedstock adapted compost microbial communities from Newby Island compost facility, Milpitas CA Feedstock adapted compost microbial communities from Newby Island compost facility, Milpitas, CA, USA - Passage 4_SG DOE Joint Genome Institute (JGI) 3300000169 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Solid waste Composting Feedstock Unclassified Feedstock adapted compost 37.454581 -121.928712 105481652 170247 119 6 148 12 0.0 Metagenome 3300005108 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F05 DOE Joint Genome Institute (JGI) 3300005108 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 45661259 66890 94 0 139 0 SRX3195091 Unrestricted 0.0 Metagenome 3300000636 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 02JUL2007 hypolimnion DOE Joint Genome Institute (JGI) 3300000636 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300020343 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000475 (ERX555975-ERR599174) CEA Genoscope 3300020343 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -31.0263 4.6977 344684795 836563 338 40 525 98 0.0 Metagenome 3300031656 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #67 DOE Joint Genome Institute (JGI) 3300031656 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5735 77.9231 523746243 1149251 584 396 776 625 SRX5650066 Unrestricted 16.87 Metagenome 3300012980 *Microbiome Permanent Draft Weathered mine tailings microbial communities from Hibbing, Minnesota, USA Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCW15 University of Minnesota - Twin Cities 3300012980 Metagenome Analysis metaSPAdes released by JGI data releasing policy Yes Yes daniel.s.jones@nmt.edu Daniel Jones No Environmental Terrestrial Mine Geologic Unclassified Weathered mine tailings 47.432362 -92.940835 45382623 65345 23 2 30 2 0.0 Metagenome 3300040419 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Ozarks Complex, AL, USA - LENO_061-M-20160830-COMP-DNA1 Battelle Memorial Institute 3300040419 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.85388 -88.16122 4738928 14523 33 5 56 5 0.0 Metagenome 3300020204 *Microbiome Permanent Draft Freshwater microbial communities from Lake Tanganyika, Tanzania Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015008 Mahale S9 surface DOE Joint Genome Institute (JGI) 3300020204 Metagenome Analysis spades v. 3.10.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater lake -6.4662 29.9408 1263809690 2121509 378 88 563 104 SRX3983986 Unrestricted 52.56 Metagenome 7000000557 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human Vaginal introitus microbial communities from NIH, USA - visit 2, subject 764042746 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000557 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Introitus Human 39.0042816 -77.1012173 2632850 3474 0 0 0 0 0.0 Metagenome 3300042065 *Microbiome Permanent Draft Forest and sugarcane field soil microbial communities from Santa Rita do Passa , Quatro, Sao Paulo, Brazil Soil microbial communities from forest in Santa Rita do Passa , Quatro, Sao Paulo, Brazil - FOR-D_2 UNESP-FCAV 3300042065 Metagenome Analysis Custom JGI assembly. Yes Yes No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -21.708519 -47.582469 20569839 42289 21 4 39 4 SRX9176022 0.0 Metagenome 3300006103 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29Jun09 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006103 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 278237310 714194 207 73 314 128 SRX2565203 Unrestricted 0.0 Metagenome 3300045405 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-513 Genome Quebec 3300045405 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 53.035093 -122.626301 695490627 1448037 248 56 438 104 0.0 Metagenome 3300013693 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01314 Weill Cornell Medical College 3300013693 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.8 -73.91 21861750 25871 12 0 15 0 SRX823254 0.0 Metagenome 3300002989 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Incubations 004-32A DOE Joint Genome Institute (JGI) 3300002989 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.28381 -156.5985 230462575 433131 192 0 388 0 SRX1990921 Unrestricted 0.0 Metagenome 3300009773 *Microbiome Permanent Draft Anaerobic biogas reactor microbial communites from Washington, USA Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2_B C12 SIP DNA DOE Joint Genome Institute (JGI) 3300009773 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dacb@uw.edu David Beck Yes 28895946 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic biogas reactor 47.6525 -122.3049 907448647 1605420 710 0 1099 2 SRX2339319 Unrestricted 0.0 Metagenome 3300042945 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2006D11-rr0375 DOE Joint Genome Institute (JGI) 3300042945 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1265708690 1881297 468 36 551 76 Unrestricted 17.32 Metagenome 3300008556 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159591683 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008556 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 100850366 139340 78 0 97 0 0.0 Metagenome 3300069434 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Mid-Atlantic, VA, USA - SCBI_003-M-20170717-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069434 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89292 -78.1395 13916962 45049 65 3 117 6 0.0 Metagenome 3300030400 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces viral communities from adenoma patient in Toronto, Canada - MG100066 University of Michigan 3300030400 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 43.65 -79.38 2321678 4142 3 1 8 0 0.0 Metagenome 3300025885 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025885 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 851448684 2120882 448 10 797 24 SRX2745014 Unrestricted 0.0 Metagenome 3300064815 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 680 in Bonnyville, Alberta, Canada - S00JY_0748 Microbiome Insights 3300064815 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 54.19361867 -110.4724417 9415482 14244 19 0 25 0 0.0 Metagenome 3300017413 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_03OCT2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017413 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 184589440 361201 54 80 75 124 SRX3927223 Unrestricted 10.3 Metagenome 3300013146 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100231 University of Pennsylvania 3300013146 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14156801 27462 9 0 14 3 SRX756670 0.0 Metagenome 3300018892 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - early-mid stage, bundles v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018892 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 362796991 674134 262 10 475 13 0.0 Metagenome 3300014133 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_019 The George Washington University (GWU) 3300014133 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 27485950 55607 44 7 86 7 SRX656274 0.0 Metagenome 3300033758 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Loreto, Peru - SR_A DOE Joint Genome Institute (JGI) 3300033758 Metagenome Analysis spades v. 3.13.0 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Unclassified peatland -4.5438 -74.6258 159596910 472391 298 4 501 2 SRX7525211 Unrestricted 7.0 Metagenome 3300048919 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled DOE Joint Genome Institute (JGI) 3300048919 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Unclassified Roots Unclassified Root 42.40581 -85.40228 850513014 1159057 279 50 372 51 Unrestricted 37.65 Metagenome 3300028242 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Alfalfa, Gen0, Rep 2, Chloramphenicol (v3) (version 3) DOE Joint Genome Institute (JGI) 3300028242 Metagenome Analysis spades v. SPAdes version: 3.11.1-check No Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4148 -119.8405 3020796866 6926664 2940 28 4562 36 SRX3963291 Unrestricted 0.0 Metagenome 3300002047 *Microbiome Permanent Draft Soil microbial communities from Amlakhadi River, Gujarat, India Soil microbial communities from Amlakhadi River, Gujarat, India - Sample 1 3300002047 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Aquatic River Freshwater Sediment Soil 21.636337 72.989458 0 0 0 0 0 0 0.0 Metagenome 7000000385 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 160319967 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000385 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 111602286 155889 0 0 0 0 0.0 Metagenome 2199352028 *Microbiome Permanent Draft Subaerial biofilm microbial communities from sulfidic caves, Italy, that are extremely acidic Subaerial biofilm microbial communities from sulfidic caves, Italy, that are extremely acidic - Acquasanta AS5 Pennsylvania State University 2199352028 Metagenome Analysis Public release - Daniel Jones (April 29, 2016) No Yes djones@psu.edu Daniel Jones No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Subaerial biofilm 42.755 13.411118 7103528 13784 0 0 0 0 0.0 Metagenome 3300019934 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLC_1-2_MG DOE Joint Genome Institute (JGI) 3300019934 Metagenome Analysis spades v. 3.10.1 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 19712392 56529 56 15 104 20 SRX3983487 Unrestricted 37.85 Metagenome 3300001123 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP2969 DOE Joint Genome Institute (JGI) 3300001123 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 32.08 -17.26 51412913 125725 93 0 134 0 SRX1981966 Unrestricted 0.0 Metagenome 3300049671 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought DOE Joint Genome Institute (JGI) 3300049671 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 124344837 280359 281 14 477 20 Unrestricted 8.49 Metagenome 3300045546 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-460 Genome Quebec 3300045546 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.044741 -122.310811 1065290039 2281639 555 141 909 281 0.0 Metagenome 3300041932 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from the Rocky Mountain Biological Laboratory (RMBL), Gothic, Colorado, United States - 2018WM_8W DOE Joint Genome Institute (JGI) 3300041932 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9595 -106.99 91350621 284417 186 16 328 26 SRX14810954 Unrestricted 7.47 Metagenome 3300028424 *Microbiome Permanent Draft Laboratory-enriched microbial communities from a contaminated site in Ontario, Canada - KB-1 12DCA/M_2008_UT Laboratory-enriched microbial communities from a contaminated site in Ontario, Canada - KB-1 12DCA/M_2008_UT v2 McGill University 3300028424 Metagenome Analysis ALLPATHS-LG v. 47974 released by JGI data releasing policy Yes Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Engineered Bioremediation Unclassified Unclassified Unclassified enrichment culture 43.65699737 -79.39033177 36451232 38361 21 0 22 0 0.0 Metagenome 3300006311 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_1000m University of Hawaii 3300006311 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Aphotic zone Marine 22.75 -158.0 230755857 489113 182 11 286 18 0.0 Metagenome 3300034778 *Microbiome Permanent Draft Understanding the reciprocal impacts of modified plant cell wall and associated microbiome Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-PdIQD-R4 DOE Joint Genome Institute (JGI) 3300034778 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kalluriudayc@ornl.gov Udaya C. Kalluri No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 32.1348 -81.9657 492966705 515551 59 282 74 122 SRX7584241 Unrestricted 0.0 Metagenome 3300028859 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_1 DOE Joint Genome Institute (JGI) 3300028859 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 551728712 1119525 307 75 467 136 SRX5356667 Unrestricted 0.0 Metagenome 3300069550 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Ozarks Complex, AL, USA - LENO_006-M-20160830-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069550 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.85388 -88.16122 361404239 987100 288 15 546 21 0.0 Metagenome 3300003213 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10K4-12 DOE Joint Genome Institute (JGI) 3300003213 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 4474255 10776 42 0 58 2 SRX2576206 Unrestricted 0.0 Metagenome 3300001936 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Halifax, Nova Scotia, Canada - GS004 J. Craig Venter Institute (JCVI) 3300001936 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine 44.137222 -63.644444 33043040 56286 35 2 47 1 0.0 Metagenome 3300001771 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from the Cayman Rise, Cayman Islands Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Beebe Sites 3300001771 Metagenome Analysis IDBA_UD k52-k92 step10 released by JGI data releasing policy No Yes Gregory Dick, Sunit Jain No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 18.35 -81.85 113560268 164902 133 7 196 4 0.0 Metagenome 3300037326 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Fletcher Lake #419 DOE Joint Genome Institute (JGI) 3300037326 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4514 78.2565 416327873 834109 149 74 223 95 SRX9173578 Unrestricted 16.09 Metagenome 3300031404 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #228 DOE Joint Genome Institute (JGI) 3300031404 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 466059736 779664 123 31 170 43 SRX5329023 Unrestricted 41.39 Metagenome 3300002544 *Microbiome Permanent Draft Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland, that are autotrophic Deep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/17 DOE Joint Genome Institute (JGI) 3300002544 Metagenome Analysis Yes Yes rizlan.bernier-latmani@epfl.ch Rizlan Bernier-Latmani Yes 27739431 Environmental Aquatic Groundwater Deep subsurface Porewater Deep subsurface 47.379 7.1648 118273023 204025 171 1 263 2 SRX957917 Unrestricted 0.0 Metagenome 3300027766 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - Or.Sf.rz (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027766 Metagenome Analysis spades v. 3.11.1 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.7658 -100.163 673260334 1569387 646 82 1086 128 SRX2124703 Unrestricted 0.0 Metagenome 3300031942 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176 DOE Joint Genome Institute (JGI) 3300031942 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 2990282738 6608921 867 27 1616 59 SRX5820638 Unrestricted 9.8 Metagenome 3300021495 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-10-11_MG DOE Joint Genome Institute (JGI) 3300021495 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.0114 -110.5956 142764967 312710 165 1 281 5 SRX3982312 Unrestricted 16.16 Metagenome 3300043447 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Yakima River, Benton City, Washington, USA - yakimariver_2019_sw_WHONDRS-S19S_0060 DOE Joint Genome Institute (JGI) 3300043447 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 46.253 -119.4772 769065332 1343310 534 109 873 148 Unrestricted 22.72 Metagenome 3300035536 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B2.2_Sample2.Rodeo2.Well665 DOE Joint Genome Institute (JGI) 3300035536 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 125898546 204668 104 0 169 0 SRX8350981 Unrestricted 70.82 Metagenome 3300013334 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100281 University of Pennsylvania 3300013334 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8200802 23891 18 0 30 0 SRX756620 0.0 Metagenome 3300009412 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s2 DOE Joint Genome Institute (JGI) 3300009412 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 39.48 4.36 253873966 497955 148 0 250 0 SRX2753805 Unrestricted 0.0 Metagenome 3300061682 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0592 Microbiome Insights 3300061682 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 174338213 254536 104 5 199 10 0.0 Metagenome 3300014206 *Microbiome Permanent Draft Leachate and groundwater microbial communities from a municipal landfill and adjacent aquifer in Southern Ontario, Canada Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Pumphouse #3 metaG DOE Joint Genome Institute (JGI) 3300014206 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes laura.hug@uwaterloo.ca Laura Hug No Engineered Solid waste Unclassified Landfill Unclassified landfill leachate 43.442 -80.577 2497637605 5019461 3830 1 5951 4 SRX3575198 Unrestricted 8.32 Metagenome 3300005542 *Microbiome Permanent Draft Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 DOE Joint Genome Institute (JGI) 3300005542 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shadeash@msu.edu, shade.ashley@gmail.com Ashley Shade Yes 30397342 Environmental Terrestrial Unclassified Soil Unclassified Surface soil 40.7999 -76.3402 2492768146 7220624 1714 55 2960 99 SRX2837973 Unrestricted 0.0 Metagenome 3300024939 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 44_HOW7 (SPAdes) DOE Joint Genome Institute (JGI) 3300024939 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 63982749 103777 51 3 71 9 SRX2720573 Unrestricted 0.0 Metagenome 3300050309 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_72 DOE Joint Genome Institute (JGI) 3300050309 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.598 161.007 394410405 582165 160 4 191 8 SRX18235926 Restricted 43.3 Metagenome 3300055368 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - ATCcR1C-21 DOE Joint Genome Institute (JGI) 3300055368 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 39272318 75759 55 8 77 6 Unrestricted 0.0 Metagenome 3300021200 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge C. singaporensis associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - co52is 200bp-microeukaryotes University of New South Wales 3300021200 Metagenome Analysis IDBA-UD released by JGI data releasing policy Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Coelocarteria singaporensis (marine sponge) -9.8241 150.825833 188225 423 0 0 0 0 0.0 Metagenome 3300014926 *Microbiome Permanent Draft Danish lakes Microbial communities Depth profiles Lake Almind and Hund Freshwater microbial communities from Lake Almind, Silkeborg, Region Midtjylland, Denmark - ALS_03.08.12_19m re-submission with coverage Odense University Hospital 3300014926 Metagenome Analysis MEGAHIT v1.1.1 released by JGI data releasing policy Yes Yes atreusch@biology.sdu.dk Alexander Treusch No Environmental Aquatic Lake Freshwater Unclassified Freshwater 56.148 9.546 6.9 39807324 87438 50 3 119 6 0.0 Metagenome 3300042710 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from Lilliput hydrothermal vent, Atlantic Ocean - BspSym_Li_2_10-4 Re-assembly Max Planck Institute for Marine Microbiology 3300042710 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills -9.5481672 -13.2088327 236608435 227000 8 16 10 9 ERX3367179 0.0 Metagenome 3300049825 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Colorado, USA - cachelapoudre_2019_sed_WHONDRS-S19S_0077 DOE Joint Genome Institute (JGI) 3300049825 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 40.66403 -105.223141 1203594701 2471625 537 28 997 45 Unrestricted 15.08 Metagenome 3300009121 *Microbiome Permanent Draft Syntrophic microbial communities from biogas reactors in Seattle, WA Syntrophic microbial communities from biogas reactors in Seattle, WA - R1.C12.But.A IDBA Molecular Research LP (MR DNA) 3300009121 Metagenome Analysis IBDA-UD v. 1.11 released per JGI data release policy Yes Yes ziels@uw.edu Ryan Ziels No Engineered Wastewater Unclassified Anaerobic digestor Unclassified anaerobic wastewater sludge 47.652555 -122.304991 308822710 485473 184 0 279 0 0.0 Metagenome 3300048552 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_110504.NP2 DOE Joint Genome Institute (JGI) 3300048552 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 595793878 1250404 424 55 622 107 Unrestricted 16.31 Metagenome 3300041673 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_168 MetaG AgResearch, New Zealand, Mosgeil 3300041673 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1403411033 3078382 335 33 1174 55 0.0 Metagenome 3300034794 *Microbiome Permanent Draft Sediment microbiome project Sediment microbial communities from wetland pond in Xixi Nat. Park in Hangzhou, Zhejiang, China - 2 Beijing Genomics Institute (BGI) 3300034794 Metagenome Analysis megahit v. 1.1.3 released by JGI data releasing policy No Yes 17826834892@163.com wang binhao No Environmental Aquatic Pond Freshwater Sediment sediment 30.268 120.04 182755191 250686 85 1 130 1 0.0 Metagenome 3300033050 *Microbiome Permanent Draft Characterization of microbial community from North Pond CORK fluids Aquifer fluid microbial communities from North Pond CORKs, Mid-Atlantic Ridge, Atlantic Ocean - Hole 1383C Deep Marine Biological Laboratory 3300033050 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Aquatic Oceanic Marine Oceanic crust Aquifer fluid 22.8 -46.05 344610191 539010 224 2 317 11 0.0 Metagenome 3300026220 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-063 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026220 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Permafrost soil 68.6137 -149.3144 187380045 434962 291 5 495 5 SRX2761077 Unrestricted 0.0 Metagenome 3300070824 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_002-M-20200708-COMP-DNA1 3300070824 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 7910634 26121 69 14 96 21 0.0 Metagenome 3300003418 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_inoc_biof DOE Joint Genome Institute (JGI) 3300003418 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioremediation Unclassified Thiocyanate Unclassified Wastewater bioreactor -33.936637 18.478905 171736237 298355 208 6 307 9 SRX2576691 Unrestricted 0.0 Metagenome 3300070459 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_003-M-20190610-COMP-DNA2 3300070459 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 8685823 27081 34 9 74 9 0.0 Metagenome 3300003465 *Microbiome Permanent Draft Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil, in a copper mine Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P5 sample University of Campinas 3300003465 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes danba.castro@gmail.com Daniel Castro No Environmental Terrestrial Unclassified Soil Mine drainage Ore pile and mine drainage contaminated soil -6.426389 -50.051389 250061647 384286 104 2 180 3 0.0 Metagenome 3300034070 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-3-M DOE Joint Genome Institute (JGI) 3300034070 Metagenome Analysis spades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0467 268003252 575609 220 3 323 6 SRX8138015, SRX8138016 Unrestricted 0.0 Metagenome 3300025256 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025256 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Unclassified Roots Unclassified Arabidopsis root 35.9082 -79.0499 203852956 282086 70 4 105 8 SRX1991092 Unrestricted 0.0 Metagenome 3300036859 *Microbiome Permanent Draft Soil microbial communities from fields in the western Corn Belt region, Nebraska, United States Metatranscriptome of soil microbial communities from fields in the western Corn Belt region, Nebraska, United States - Switchgrass plot 123, 120 kg/ha N, depth 2 DOE Joint Genome Institute (JGI) 3300036859 Metagenome Analysis metaspades v. 3.13.0 Yes Yes marty.schmer@ars.usda.gov Marty Schmer No Environmental Terrestrial Agricultural land Soil Unclassified soil 41.1681 -96.4119 1668885439 2475192 522 4 828 6 SRX8380276 Unrestricted 14.83 Metagenome 7000000054 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764285508 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000054 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 26420731 56482 0 0 0 0 0.0 Metagenome 3300026900 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G01K4-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026900 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 54610317 161548 161 4 309 3 SRX1991290 Unrestricted 0.0 Metagenome 3300017772 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 53 SPOT_SRF_2014-04-10 DOE Joint Genome Institute (JGI) 3300017772 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 444169086 1026397 114 135 166 253 SRX7207543, SRX7207542 Unrestricted 0.0 Metagenome 3300013827 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01138 Weill Cornell Medical College 3300013827 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -73.94 40250274 62943 30 0 44 0 SRX823093 0.0 Metagenome 3300043115 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B6.5_Sample6.Rodeo5.Well1210 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043115 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 118041785 210286 128 0 265 1 SRX8356120 Unrestricted 88.6 Metagenome 3300040632 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Mid-Atlantic, VA, USA - BLAN_032-M-20170714-COMP-DNA1 Battelle Memorial Institute 3300040632 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Farm Terrestrial soil 39.06026 -78.07164 1205592 3615 22 8 45 10 0.0 Metagenome 3300049480 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Pennsylvania, USA - shaverscreek_2019_sed_WHONDRS-S19S_0064 DOE Joint Genome Institute (JGI) 3300049480 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 40.61043 -78.00803 199197371 475501 484 4 933 6 Unrestricted 8.88 Metagenome 3300006027 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA DOE Joint Genome Institute (JGI) 3300006027 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 550122727 1538332 324 7 574 16 SRX2853902 Unrestricted 0.0 Metagenome 3300005784 *Microbiome Permanent Draft Deep-sea sediment bacterial and archaeal communities Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten IV Center for Biotechnology (CeBiTec), Bielefeld Univeristy 3300005784 Metagenome Analysis Idba_ud 1.1.1 released per JGI data release policy No Yes jrapp@mpi-bremen.de Josephine Rapp No Environmental Aquatic Unclassified Marine Unclassified sediment 37547260 71884 40 3 84 3 0.0 Metagenome 2140918017 *Microbiome Permanent Draft Hypersaline microbial communities from Antarctic Deep Lake Hypersaline microbial communities from Antarctic Deep Lake - 24m 0.8um v1 (version 2) DOE Joint Genome Institute (JGI) 2140918017 Metagenome Analysis Velvet released based on JGI ITS No Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli, Rick Cavicchioli; Michelle Allen Yes 24082106 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline -68.54 78.18 60876627 106722 59 9 102 0 Unrestricted 0.0 Metagenome 3300027173 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036 (SPAdes) DOE Joint Genome Institute (JGI) 3300027173 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 100198781 267279 70 3 137 3 SRX2014379 Unrestricted 0.0 Metagenome 3300043168 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_100m_C4_20cm25cm (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043168 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 37.1343 -121.4557 337257391 554373 208 1 374 1 SRX9141777 Unrestricted 62.12 Metagenome 3300000500 *Microbiome Permanent Draft Salt marsh microbial communities from Little Sippewissett, Woods Hole, MA that are anoxygenic and photosynthetic Microbial Communities from Little Sippewissett Salt Marsh, Woods Hole, MA that are anoxygenic and photosynthetic, sample photosynthetic consortia 740nm Marine Biological Laboratory 3300000500 Metagenome Analysis No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Intertidal zone Marine Salt marsh Salt Marsh 41.5758508 -70.635807 70281472 142537 44 0 81 1 0.0 Metagenome 3300042550 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Alyscotermes sp. from Kakamega Forest Station, Kenya - Aly426 Eurofins MWG Operon 3300042550 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 0.227031 34.89273 802911566 759783 86 5 159 23 0.0 Metagenome 3300032308 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains Ecozone, Canada - Lake 08-134 Genome Quebec 3300032308 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.257686 -74.702097 717946020 1494114 400 71 681 126 0.0 Metagenome 3300002782 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A1w-11 DOE Joint Genome Institute (JGI) 3300002782 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 321177 1085 25 0 35 0 SRX1991146 Unrestricted 0.0 Metagenome 3300038456 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300038456 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0473 1014216076 1705017 281 9 459 10 SRX8137025, SRX8137024 Unrestricted 0.0 Metagenome 3300070337 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_003-M-20180723-COMP-DNA1 3300070337 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 5800235 18249 72 5 108 6 0.0 Metagenome 3300047503 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_4_B DOE Joint Genome Institute (JGI) 3300047503 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 187930386 218326 104 1 122 2 Restricted 0.0 Metagenome 3300046490 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvCe-F(1) 1-5 DOE Joint Genome Institute (JGI) 3300046490 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3547 19.0433 456306898 753865 238 16 387 27 Restricted 15.9 Metagenome 3300027085 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - Naphthalene biodegradation metagenome 12C5dose (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027085 Metagenome Analysis spades v. 3.11.1 Yes Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.292222 -73.604444 111385338 367106 310 12 441 17 Unrestricted 0.0 Metagenome 3300060388 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210609_13_17 DOE Joint Genome Institute (JGI) 3300060388 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 473566958 695052 229 148 283 208 Unrestricted 35.95 Metagenome 3300003537 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS903_Marker113_DNA 3300003537 Metagenome Analysis CLC genomics workbench 7.0 released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com; elks@mit.edu Caroline Fortunato, Caroline Fortunato; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.92274 -129.988104 193269043 461742 146 8 325 15 0.0 Metagenome 3300001007 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN574 DOE Joint Genome Institute (JGI) 3300001007 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.070856 -96.582821 190328 655 14 0 25 1 SRX1986913 Unrestricted 0.0 Metagenome 3300011164 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01221 Weill Cornell Medical College 3300011164 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.87 -73.87 29462453 38614 12 0 15 0 SRX823176 0.0 Metagenome 3300045432 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Missouri River, Nebraska, USA - NASQAN2011_057 DOE Joint Genome Institute (JGI) 3300045432 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 41.2588 -95.9225 126035841 344154 280 99 428 154 Unrestricted 0.0 Metagenome 3300044720 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_7BD DOE Joint Genome Institute (JGI) 3300044720 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.3852 -106.1862 1132419396 1833760 408 27 613 46 SRX20649972 Unrestricted 15.91 Metagenome 3300003811 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA4M DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003811 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu, tmcmahon@engr.wisc.edu; shaomei.he@gmail.com Katherine McMahon, Katherine McMahon; Shaomei He No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 18489198 47527 61 4 126 5 SRX2565124 Unrestricted 0.0 Metagenome 3300012347 *Microbiome Permanent Draft Freshwater microbial communities from rivers and streams along an organic matter gradient associated with agriculture in Ontario, Canada Freshwater microbial communities from Fish Creek, Ontario, Canada - S48 Molecular Research LP (MR DNA) 3300012347 Metagenome Analysis metaSPAdes released by JGI data releasing policy No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lotic Freshwater Unclassified Freshwater 43.2206 -81.2368 8.67 276079911 818902 75 15 162 22 0.0 Metagenome 3300042434 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME17Sep2014-rr0696 DOE Joint Genome Institute (JGI) 3300042434 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 876123347 1364337 375 133 542 168 Unrestricted 15.44 Metagenome 3300012916 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2 DOE Joint Genome Institute (JGI) 3300012916 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 937281844 2322062 929 99 1728 226 SRX3298782 Unrestricted 4.1 Metagenome 3300036914 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 E3 10-14 DOE Joint Genome Institute (JGI) 3300036914 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0468 347446048 748453 299 6 470 6 SRX8142649 Unrestricted 7.46 Metagenome 3300040663 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 055B_R1 University of Maryland 3300040663 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.98528333 25.65134722 1507961 3986 3 0 6 0 0.0 Metagenome 3300003208 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06K2-12 DOE Joint Genome Institute (JGI) 3300003208 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 332618 1131 18 1 40 3 SRX2576203 Unrestricted 0.0 Metagenome 3300042846 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159 NMDC pilot DOE Joint Genome Institute (JGI) 3300042846 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92057636 -106.94874802 1029057120 2414233 513 14 950 25 SRX5354714 0.0 Metagenome 3300025986 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025986 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 3937736095 9216960 1732 146 2984 281 SRX2740271 Unrestricted 0.0 Metagenome 3300064916 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 727 in Wetaskiwin, Alberta, Canada - S00JY_0243 Microbiome Insights 3300064916 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.53069413 -113.1733318 60050924 92363 40 0 76 0 0.0 Metagenome 3300031141 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #351 DOE Joint Genome Institute (JGI) 3300031141 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5596 77.8957 739110938 1476294 331 148 462 242 SRX5650216 Unrestricted 16.89 Metagenome 3300031867 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Bovine rumen microbial communities from UC Davis, California, United States - 0_2496_0518 DOE Joint Genome Institute (JGI) 3300031867 Metagenome Analysis spades v. 3.12.0 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen 38.5357 -121.7593 3485964791 7297034 4260 51 6483 68 SRX5813659 Unrestricted 15.28 Metagenome 3300017408 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12SEP2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017408 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 217594304 446060 179 155 296 283 SRX3926270 Unrestricted 5.83 Metagenome 3300017687 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR46_M_MetaG DOE Joint Genome Institute (JGI) 3300017687 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 61.242 21.4899 54468488 102493 55 1 74 1 SRX3604114 Unrestricted 214.07 Metagenome 3300022357 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Lake Baghdad, Rottnest Island (WA - Australia) - LBBM1 JM67 AGRF 3300022357 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.994794 115.523776 40721480 75372 47 0 56 0 0.0 Metagenome 3300000761 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 12JUL2007 epilimnion DOE Joint Genome Institute (JGI) 3300000761 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300022585 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 7 Selected contigs with viral hallmark genes Autonomous University of Barcelona 3300022585 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 1684016 2537 0 0 0 0 0.0 Metagenome 3300031889 *Microbiome Permanent Draft Soil microbial communities Wild Oat associated soil bacterial communities from Lone Jack Road, Encinitas, CA, USA - WO Illumina 3300031889 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 33.05729 -117.223369 1180699549 4381986 536 38 1150 124 0.0 Metagenome 3300042795 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S1_50_60 NMDC pilot DOE Joint Genome Institute (JGI) 3300042795 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen Yes 29920461 Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228249 -119.2718117 61886959 173367 173 3 304 4 SRX2523279 0.0 Metagenome 3300014671 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01537 Weill Cornell Medical College 3300014671 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.99 30473486 51128 19 0 29 0 SRX823413 0.0 Metagenome 3300033124 *Microbiome Finished Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam HAN_HAN Chunlab, Inc 3300033124 Metagenome Analysis SPAdes v. 3.8.2 released by JGI data releasing policy No Yes chojc@inha.ac.kr; krmoon518@gmail.com Jang-Cheon Cho; Kira Moon No Environmental Aquatic River Freshwater Unclassified Freshwater 37.5254611 127.0168945 28025415 40021 0 0 0 0 0.0 Metagenome 3300067228 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210528_01_21 DOE Joint Genome Institute (JGI) 3300067228 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 600189327 912831 208 101 285 154 Unrestricted 0.0 Metagenome 3300044934 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_6_D DOE Joint Genome Institute (JGI) 3300044934 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 194918509 228562 128 1 140 1 Unrestricted 76.29 Metagenome 3300017669 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - BS13-02 University of Michigan 3300017669 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.42421 -85.85677 33377216 43865 18 0 28 0 0.0 Metagenome 3300042003 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821FE14Z081617_5551 DOE Joint Genome Institute (JGI) 3300042003 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.201 -97.9447 307257115 850595 433 29 855 45 SRX14828568 Unrestricted 7.14 Metagenome 3300031214 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #492 DOE Joint Genome Institute (JGI) 3300031214 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 204597953 390863 115 22 160 28 SRX5649482 Unrestricted 76.05 Metagenome 3300000053 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Coal bed methane well microbial communities from Alberta, Canada McGill University 3300000053 Metagenome Analysis No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Biotransformation Unclassified Microbial solubilization of coal Unclassified Hydrocarbon resource environments 52.119 -113.78 201463969 473671 231 41 461 86 0.0 Metagenome 3300006165 *Microbiome Permanent Draft Marine microbial communities from the West Antarctic Peninsula, for metatranscriptomic analysis Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA DOE Joint Genome Institute (JGI) 3300006165 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes mattcott@udel.edu Matthew Cottrell, Matthew T. Cottrell No Environmental Aquatic Coastal Marine Unclassified Marine -64.8156 -64.0406 1399272735 4615274 481 466 833 715 SRX2848064 Unrestricted 0.0 Metagenome 3300029455 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001918-109 Beijing Genomics Institute (BGI) 3300029455 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 71385370 95181 85 0 117 1 0.0 Metagenome 3300013651 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100203 University of Pennsylvania 3300013651 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9306293 18012 6 0 11 1 SRX756696 0.0 Metagenome 3300030072 *Microbiome Permanent Draft Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA - kan3 University of Minnesota 3300030072 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic River Freshwater Unclassified Freshwater 44.917867 -93.128967 4522003 4613 6 0 7 0 0.0 Metagenome 3300006118 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul07 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006118 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 287347682 791357 236 90 321 193 SRX2565422 Unrestricted 0.0 Metagenome 3300009922 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY14 University of New South Wales 3300009922 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 57706180 107031 35 6 42 4 0.0 Metagenome 3300043326 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-350 Genome Quebec 3300043326 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 51.68812 -113.555192 982526744 2268564 307 17 567 26 0.0 Metagenome 3300007660 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159915365 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007660 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 33320797 65609 27 0 43 0 0.0 Metagenome 3300021410 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Coastal seawater microbial communities from Marineland, Florida, United States - SWPA TP0 #3 DOE Joint Genome Institute (JGI) 3300021410 Metagenome Analysis spades v. 3.11.1-check Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6703 -81.2145 142207656 202375 96 0 103 0 SRX3985501 Unrestricted 69.74 Metagenome 3300037447 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - WH_080817 DOE Joint Genome Institute (JGI) 3300037447 Metagenome Analysis metaspades v. 3.13.0 Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.8725 -89.3578 316803925 860747 420 42 836 75 SRX9382053 Unrestricted 7.4 Metagenome 3300027129 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepB_8h DOE Joint Genome Institute (JGI) 3300027129 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 109047475 237601 114 8 197 18 SRX5245101 Unrestricted 17.06 Metagenome 7000000120 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 765337473 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000120 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 1895487 1892 0 0 0 0 0.0 Metagenome 3300046468 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_180516.NP2 DOE Joint Genome Institute (JGI) 3300046468 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 791164449 1641412 416 76 645 128 Unrestricted 15.5 Metagenome 3300044630 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME23Jul2003-rr0896 DOE Joint Genome Institute (JGI) 3300044630 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1147642920 1765914 404 30 558 51 Unrestricted 23.11 Metagenome 3300013022 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Fungus gardens microbial communities from leaf cutter ant in Botucatu, State of S?o Paulo, Brazil - Atta bisphaerica ABBM3 DOE Joint Genome Institute (JGI) 3300013022 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Fungi Unclassified Mycelium Unclassified fungus garden -22.847 -48.434 185710356 365164 1577 19 3132 21 SRX3899798 Unrestricted 130.82 Metagenome 3300012426 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100520 University of Pennsylvania 3300012426 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 6784128 11479 13 5 23 15 SRX756234 0.0 Metagenome 3300005113 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F04 DOE Joint Genome Institute (JGI) 3300005113 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 49771096 74446 126 0 208 0 SRX3195092 Unrestricted 0.0 Metagenome 3300065525 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 800 in Cowley, Alberta, Canada - S00JY_0059 Microbiome Insights 3300065525 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.2618822 -113.3619356 2699400 4310 15 2 36 1 0.0 Metagenome 3300020038 *Microbiome Permanent Draft Freshwater viral communities from Chicago Sanitary Ship Canal, USA Freshwater viral communities from Lake Michigan, Illinois, USA - 2 University of Illinois-Urbana Champaign 3300020038 Metagenome Analysis SPADES v3.10.1 released by JGI data releasing policy No Yes wtliu@illinois.edu Wen-Tso Liu No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.925 -87.6083333 9181727 14573 2 0 5 0 0.0 Metagenome 7000000575 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159814214 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000575 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 205692047 371149 0 0 0 0 0.0 Metagenome 3300022439 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1BM2 JM56 AGRF 3300022439 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 39033159 75637 27 0 37 0 0.0 Metagenome 3300025896 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025896 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 1148267886 2992062 321 70 460 113 SRX2854010 Unrestricted 0.0 Metagenome 3300007964 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-24 DOE Joint Genome Institute (JGI) 3300007964 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 592415021 1066099 931 7 1512 14 SRX3198641 Unrestricted 0.0 Metagenome 3300050472 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - E9NW16 DOE Joint Genome Institute (JGI) 3300050472 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 198442107 347774 204 41 376 56 Unrestricted 15.9 Metagenome 3300037168 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 S1 1-5 DOE Joint Genome Institute (JGI) 3300037168 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3531 19.0474 1030579992 2037806 406 14 690 38 SRX8144470 Unrestricted 7.94 Metagenome 3300057047 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F2P_0_1 DOE Joint Genome Institute (JGI) 3300057047 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.97683846 -81.7074257 1129960971 1853470 477 9 887 14 Unrestricted 12.59 Metagenome 3300037115 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPON1-1-X1 DOE Joint Genome Institute (JGI) 3300037115 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3569 19.0501 343852399 623228 146 8 218 7 SRX8163702 Unrestricted 27.69 Metagenome 3300031999 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20 DOE Joint Genome Institute (JGI) 3300031999 Metagenome Analysis spades v. 3.12.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5119 -110.3577 4079319555 8142641 1963 23 3099 24 SRX6412739 Unrestricted 16.56 Metagenome 7000000396 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 604812005 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000396 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 125418609 235839 0 0 0 0 0.0 Metagenome 3300001802 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM39, ROCA_DNA237_0.2um_Ob_C_3a 3300001802 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Lotic Freshwater Unclassified Marine plankton -1.919017 -55.525717 2298590 7083 2 2 10 4 0.0 Metagenome 3300005301 *Microbiome Permanent Draft Bioremediated contaminated groundwater microbial communities from North Railroad Avenue plume (NRAP), New Mexico Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-00 DOE Joint Genome Institute (JGI) 3300005301 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, NNIvanova@lbl.gov; rebecca.reiss@nmt.edu Natasha Ivanova, Natalia Ivanova; Rebecca Reiss Yes 27980706 Environmental Aquatic Groundwater Deep subsurface Contaminated Bioremediated contaminated groundwater 35.992 -106.0797 13264020 13854 9 0 9 0 SRX2554384 0.0 Metagenome 3300005599 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF91A DOE Joint Genome Institute (JGI) 3300005599 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 356858824 1187499 334 518 532 1042 SRX2781886 Unrestricted 0.0 Metagenome 3300049041 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - A20_B_BS (version 2) DOE Joint Genome Institute (JGI) 3300049041 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 93485479 222563 256 7 552 16 Unrestricted 0.0 Metagenome 3300040722 *Microbiome Draft Lab enriched sediment microbial communities from Bremen, Germany Lab enriched sediment microbial communities from pond in Bremen, Germany - BP SPAdes CeGaT 3300040722 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy No Yes yu-ming.huang@outlook.com Yu-Ming Huang Yes 34218232 Environmental Aquatic Pond Freshwater Sediment Freshwater sediment 53.110315 8.847388 60307345 85194 19 0 27 0 0.0 Metagenome 3300039031 *Microbiome Permanent Draft Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada - low-flow bush EMw2 Dalhousie University 3300039031 Metagenome Analysis Megahit v. 1.2.8 released by JGI data releasing policy No Yes smurdock@uvic.ca Sheryl Murdock No Environmental Aquatic Hydrothermal vents Marine Tubeworm bush Low-flow tubeworm bush 47.9501 -129.0961 710743238 1543105 701 30 985 65 0.0 Metagenome 3300044445 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Leaf microbial communities from farm grass in Deerfield, Massachusetts, United States - Ryegrass_Phyllosphere_control3 DOE Joint Genome Institute (JGI) 3300044445 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 42.4788 -72.5788 586149792 1253174 447 288 654 381 Unrestricted 17.21 Metagenome 3300047565 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Logan River, Logan, Utah, USA - logan1_2019_sw_WHONDRS-S19S_0097 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047565 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 41.7207 -111.8864 142486643 228311 223 125 429 185 Unrestricted 0.0 Metagenome 3300056305 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_190821.NP1 DOE Joint Genome Institute (JGI) 3300056305 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 1126781750 2337510 729 308 1158 559 Restricted 12.07 Metagenome 3300020730 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 hypolimnion DOE Joint Genome Institute (JGI) 3300020730 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 130505942 278065 100 18 170 16 Unrestricted 0.0 Metagenome 3300059838 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.1C.9 SIP fraction DOE Joint Genome Institute (JGI) 3300059838 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 625542126 1192027 384 30 624 42 Unrestricted 0.0 Metagenome 3300021486 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-4-5_MG DOE Joint Genome Institute (JGI) 3300021486 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.0114 -110.5956 119658292 239184 155 1 252 9 SRX3982302 Unrestricted 11.84 Metagenome 3300000726 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 21 DOE Joint Genome Institute (JGI) 3300000726 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 19775700 65062 86 16 117 22 SRX4339792 Unrestricted 0.0 Metagenome 3300047359 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_191113.NP2 DOE Joint Genome Institute (JGI) 3300047359 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 594805319 1184646 358 27 487 54 Unrestricted 14.08 Metagenome 3300041806 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - A_29_wk_4 DOE Joint Genome Institute (JGI) 3300041806 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9514 -106.986 97663227 326593 246 8 453 8 SRX14808400 Unrestricted 6.18 Metagenome 3300011170 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #51 DOE Joint Genome Institute (JGI) 3300011170 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 53500386 122425 30 1 62 0 SRX2526860 Unrestricted 0.0 Metagenome 3300043361 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 244-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043361 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9608 -107.0295 268326748 795448 367 8 630 20 Unrestricted 6.35 Metagenome 3300024176 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLU1 DOE Joint Genome Institute (JGI) 3300024176 Metagenome Analysis spades v. 3.11.1 Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 49.043 13.6183 112035744 283789 151 70 263 111 SRX4456319 Unrestricted 8.72 Metagenome 3300032101 *Microbiome Permanent Draft Microbial communities from the deep biosphere Brine seep microbial communities from Boulby Mine, Loftus, North Yorkshire, England, UK - Sample_1 re-assembly The Marine Biological Laboratory 3300032101 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Unclassified Deep subsurface Unclassified Brine 54.5561 -0.8216 33299532 108792 30 9 97 9 SRX2516632 0.0 Metagenome 3300027631 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027631 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.234 -123.9135 349602502 851873 177 21 283 42 SRX2838061 Unrestricted 22.24 Metagenome 3300028299 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_45m DOE Joint Genome Institute (JGI) 3300028299 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 561949546 1042058 618 1 949 1 SRX5244715 Unrestricted 15.19 Metagenome 3300001179 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 DOE Joint Genome Institute (JGI) 3300001179 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 18909311 61652 123 21 210 37 SRX3312027 Unrestricted 0.0 Metagenome 3300028610 *Microbiome Permanent Draft Deep ocean water column microbial communities from Yap Trench, western Pacific Ocean Seawater microbial communities from Yap Trench, western Pacific Ocean - 37I-Yap-CTD02-500m 2000bp_Newsun Novogene 3300028610 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Ocean trench Marine Unclassified seawater 9.87 138.5 364516756 460581 183 2 207 1 0.0 Metagenome 3300032313 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains Ecozone, Canada - Lake 08-183 Genome Quebec 3300032313 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.746338 -79.735243 522818717 1050560 232 80 421 159 0.0 Metagenome 3300044506 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Para, Brazil - FS33 DOE Joint Genome Institute (JGI) 3300044506 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -3.3003 -54.8905 814406457 1937865 343 5 668 11 Unrestricted 8.13 Metagenome 3300041043 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - T5D6 IDBA-UD 60x Baseclear 3300041043 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 80743677 114005 127 8 195 11 0.0 Metagenome 3300023707 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen10, Rep 3 Spades (v2) (version 2) DOE Joint Genome Institute (JGI) 3300023707 Metagenome Analysis spades v. 3.11.1-check No Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4149 -119.841 287655253 380711 258 3 336 8 SRX4038383 Unrestricted 0.0 Metagenome 3300014162 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin23_30_metaG DOE Joint Genome Institute (JGI) 3300014162 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1280739972 2409829 570 6 981 10 SRX4807470 Unrestricted 9.26 Metagenome 3300019720 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BLC_2-3_MG DOE Joint Genome Institute (JGI) 3300019720 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 110028740 274674 214 17 418 18 Unrestricted 3.41 Metagenome 3300042127 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030F_E14_070516_91 DOE Joint Genome Institute (JGI) 3300042127 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.1836 -97.9974 216020839 585568 334 30 627 41 Unrestricted 7.64 Metagenome 3300012815 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched millipede-associated microbial communities from UW Madison campus, WI, USA - HID1971I_E1 MG DOE Joint Genome Institute (JGI) 3300012815 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 71241555 104421 53 0 70 0 SRX3564591 Unrestricted 0.0 Metagenome 3300025910 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025910 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 3174253560 6899223 1018 42 1912 75 SRX2745035 Unrestricted 0.0 Metagenome 3300046826 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 soil DOE Joint Genome Institute (JGI) 3300046826 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.587786 -123.193893 6.37 419762786 754624 214 10 402 16 Unrestricted 18.51 Metagenome 2189573028 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Estuarine microbial communities from Columbia River, sample from South Channel ETM site, CMGS313-FOS-0p8-ETM-15m University of South Carolina 2189573028 Metagenome Analysis released per JGI data release policy No Yes mariyasmit@hotmail.com Mariya Smit, Mariya W. Smit No Environmental Aquatic Intertidal zone Marine Estuary Marine estuarine 46.249 -123.986 33992785 70578 46 2 92 1 0.0 Metagenome 3300041963 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS915_Marker113_DNA SE_2020 Marine Biological Laboratory 3300041963 Metagenome Analysis IDBA_UD v. 1.1.3 released by JGI data releasing policy No Yes jhuber@whoi.edu; randerson@carleton.edu; cfortunato@gmail.com; elks@mit.edu Julie Huber; Rika Anderson; Caroline Fortunato; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse vent fluid, hydrothermal vents 45.9228 -129.9883 583619087 1242165 639 11 1148 22 0.0 Metagenome 3300007547 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1547B-02 DOE Joint Genome Institute (JGI) 3300007547 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2314 -123.8828 395604046 756895 344 7 515 17 SRX2753628 Unrestricted 0.0 Metagenome 3300050713 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water viral communities from Sandhills, Nebraska, United States - NSL_Smith_2019_V DOE Joint Genome Institute (JGI) 3300050713 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.78581 -102.52354 275375876 684730 18 0 35 1 Unrestricted 128.96 Metagenome 3300039143 *Microbiome Permanent Draft Freshwater microbial communities from various watersheds in Southwestern British Columbia, Canada Freshwater microbial communities from Southwestern British Columbia, Canada - MOCK_5 University of British Columbia 3300039143 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 49.0 -123.0 33053226 57475 26 0 21 0 0.0 Metagenome 3300028914 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_03 DOE Joint Genome Institute (JGI) 3300028914 Metagenome Analysis spades v. 3.11.1 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -19.6574 146.8351 2126034691 4638153 2753 40 4338 68 SRX5787114, SRX5787115 Unrestricted 0.0 Metagenome 3300061590 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D10_RHK2_4_to_RHK2 DOE Joint Genome Institute (JGI) 3300061590 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.153 -124.211 1293031297 2698343 690 149 1134 208 Unrestricted 0.0 Metagenome 3300024051 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant dump, University of Wisconsin, Madison, United States - 3A0 (version 2) DOE Joint Genome Institute (JGI) 3300024051 Metagenome Analysis spades v. 3.11.1 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0758 -89.4125 237192996 412862 197 2 265 7 SRX4821865 Unrestricted 0.0 Metagenome 3300049926 *Microbiome Permanent Draft Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA - 1_s_apr_JRB_CZO DOE Joint Genome Institute (JGI) 3300049926 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dawsonfairbanks@email.arizona.edu Dawson Fairbanks No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.88243 -106.5341008 433841135 770478 284 23 503 35 Unrestricted 15.84 Metagenome 3300034064 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054 DOE Joint Genome Institute (JGI) 3300034064 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1496684557 3127366 639 172 893 299 SRX7621687 Unrestricted 14.21 Metagenome 3300003322 *Microbiome Permanent Draft Sugarcane root and bulk soil microbial communities from Ayr, Burdekin, Queensland Australia Sugarcane root Sample L2 3300003322 Metagenome Analysis CLC genomics workbench 7 released by JGI data releasing policy No Yes yun.yeoh@uqconnect.edu.au Yun Kit Yeoh No Host-associated Plants Unclassified Roots Unclassified Sugarcane root and bulk soil -19.733298 147.17873 812171630 1117042 47 28 66 36 0.0 Metagenome 3300025614 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_135m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025614 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 367969807 684200 221 6 308 9 Unrestricted 0.0 Metagenome 3300001835 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from the Cayman Rise, Cayman Islands Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Shallow Sites - gte4kb 3300001835 Metagenome Analysis IDBA_UD k52-k92 step10 - contigs greater than or equal to 4kb Released per Gregory Dick (Dec 3, 2015) No Yes Gregory Dick, Sunit Jain No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 18.35 -81.85 160839103 168378 31 0 26 0 0.0 Metagenome 3300048854 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD8 DOE Joint Genome Institute (JGI) 3300048854 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.347657 -119.2808 969606090 1330640 150 91 204 104 Unrestricted 22.99 Metagenome 3300051238 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Leeds, Wisconsin, USA - 44_771_WI_DR_1m_c2_T1_18O DOE Joint Genome Institute (JGI) 3300051238 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 43.30485 -89.3309 2775971741 4034810 687 32 1048 44 Restricted 18.17 Metagenome 3300003403 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_500_plan DOE Joint Genome Institute (JGI) 3300003403 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 298641498 547600 120 41 188 58 SRX2770503 Unrestricted 0.0 Metagenome 3300034402 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 56SNS DOE Joint Genome Institute (JGI) 3300034402 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Sub-biocrust Soil Unclassified sub-biocrust soil 34.7856 -115.66 175408497 414716 304 3 527 8 SRX7621474 Unrestricted 8.65 Metagenome 3300049206 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - J2_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049206 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 126130561 282218 273 8 490 10 Unrestricted 0.0 Metagenome 3300034944 *Microbiome Permanent Draft Farm soil microbial communities from Tibetan Plateau, China Farm soil microbial communities from Tibetan Plateau, China - F3U Beijing Institute of Life Science, Chinese Academy of Sciences 3300034944 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Terrestrial Unclassified Soil Farm Farm soil 2653754 9592 15 2 31 5 SRX374552 0.0 Metagenome 3300017923 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in Texas, USA - hydraulic fracturing test 6_PW_210 DOE Joint Genome Institute (JGI) 3300017923 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Fracking water 30.238 -102.628 124760682 221266 243 1 469 0 SRX3937605 Unrestricted 63.59 Metagenome 3300070522 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Arizona, USA - SRER_001-M-20180801-COMP-DNA1 Battelle Memorial Institute 3300070522 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.862142 -110.818853 6.35-7.16 17029156 52019 108 6 210 15 0.0 Metagenome 3300023071 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S019-104C-5 DOE Joint Genome Institute (JGI) 3300023071 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 229376413 621151 424 19 845 26 SRX4799429 Unrestricted 7.77 Metagenome 3300011525 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01288 Weill Cornell Medical College 3300011525 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.81 -73.92 23533793 32708 16 0 25 0 SRX823228 0.0 Metagenome 3300040209 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_004-M-20140708-COMP-DNA1 Argonne National Laboratory 3300040209 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 9899641 26988 44 5 77 14 ERX2134023 0.0 Metagenome 3300020414 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000035 (ERX556019-ERR599028) CEA Genoscope 3300020414 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 20.8199 63.5138 962617214 2409331 353 24 557 46 0.0 Metagenome 3300002259 *Microbiome Permanent Draft Petroleum byproduct microbial communities from Gujarat, India Petroleum byproduct microbial communities from Kandla, Gujarat, India 3300002259 Metagenome Analysis released by JGI data releasing policy No Yes snehalbagatharia@hotmail.com Dr. Snehal Bagatharia No Environmental Terrestrial Unclassified Unclassified Unclassified Petroleum byproduct 23.03142 70.21517 16713791 49278 14 0 54 0 0.0 Metagenome 3300064890 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 615 in Smith, Alberta, Canada - S00JY_0632 Microbiome Insights 3300064890 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 55.07270132 -113.545927 237914298 308506 79 4 123 5 0.0 Metagenome 3300012461 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100471 University of Pennsylvania 3300012461 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 11062152 28138 14 3 25 5 SRX756527 0.0 Metagenome 3300027096 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF043 (SPAdes) DOE Joint Genome Institute (JGI) 3300027096 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 129280093 331180 70 6 114 10 SRX2014393 Unrestricted 0.0 Metagenome 3300004148 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_ThreeSqA_D2 DOE Joint Genome Institute (JGI) 3300004148 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.131752 -122.266335 911556226 3029841 951 20 2006 27 SRX7146256 Unrestricted 0.0 Metagenome 3300002842 *Microbiome Permanent Draft Stormwater retention pond microbial communities from Williamsburg, VA Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Junction Rte 99 and John Tyler Highway 3300002842 Metagenome Analysis Newbler released per JGI data releasing policy No Yes kewilliamson@wm.edu Kurt Williamson No Environmental Aquatic Pond Freshwater Unclassified Stormwater retention pond 37.260193 -76.737526 522250 1019 0 0 0 0 0.0 Metagenome 3300012250 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #85 DOE Joint Genome Institute (JGI) 3300012250 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 60323580 133774 62 10 105 22 SRX3241781 Unrestricted 0.0 Metagenome 3300030210 *Microbiome Permanent Draft Ice-cream associated microbial communities from Maryland, United States Ice-cream associated microbial communities from Maryland, United States - 44 _R1 U.S. Food and Drug Administration 3300030210 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Ice-cream associated 38.98 -76.93 3082805 3191 3 0 1 0 0.0 Metagenome 3300035499 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - Beaver1Rectum1 DOE Joint Genome Institute (JGI) 3300035499 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Rectum rectum 49.18 -122.54 1034230496 1879338 1155 26 1760 56 SRX8344628 Unrestricted 8.79 Metagenome 3300050553 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_RHK1_1_to_RHK1 DOE Joint Genome Institute (JGI) 3300050553 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.154 -124.211 617181019 1109528 297 100 536 137 Unrestricted 17.17 Metagenome 3300045215 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_5_E DOE Joint Genome Institute (JGI) 3300045215 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 196667578 233043 109 1 131 1 Unrestricted 96.79 Metagenome 3300005844 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 DOE Joint Genome Institute (JGI) 3300005844 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 6370583354 18424840 3876 273 6519 559 SRX2837048 Unrestricted 0.0 Metagenome 3300031792 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23 DOE Joint Genome Institute (JGI) 3300031792 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1170350512 2812852 410 15 679 17 SRX5818558 Unrestricted 11.86 Metagenome 3300008489 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764811490 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008489 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 82611704 123682 88 0 105 0 0.0 Metagenome 3300013765 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A30_80cm_6M University of Tennessee 3300013765 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 351133863 783838 84 2 147 2 SRX710598 0.0 Metagenome 3300014252 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 243_D2_2014-8-22 San Diego State University 3300014252 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 4122268 14110 12 9 35 20 0.0 Metagenome 3300070750 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Marvin Klemme Range Research Station, Oklahoma, USA - OAES_007-M-20180530-COMP-DNA1 3300070750 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 38414384 113187 87 1 200 5 0.0 Metagenome 3300048445 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_151223.NP2 DOE Joint Genome Institute (JGI) 3300048445 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 926818539 2143321 670 82 1018 164 Unrestricted 15.22 Metagenome 3300018480 *Microbiome Permanent Draft Bovine feces microbial communities from beef and dairy calves in Davis, CA, USA Bovine feces microbial communities from dairy calf in Davis, CA, USA - DMJL001J re-assembly QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018480 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes jxnliu@ucdavis.edu Jinxin Liu No Host-associated Mammals Large intestine Digestive system Fecal feces 38.5449 -121.7405 183490720 350567 245 1 430 0 0.0 Metagenome 3300042605 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Neotermes cubanus from Parque Nacional Topes de Collantes, Sierra del Escambray, Cuba - Ncb351 Eurofins MWG Operon 3300042605 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 21.90592 -80.025672 1377425212 1417396 182 34 228 57 0.0 Metagenome 3300069632 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_047-O-20160822-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069632 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 81531407 240407 131 13 254 9 0.0 Metagenome 3300024299 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_150_MG DOE Joint Genome Institute (JGI) 3300024299 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca; shallam@interchange.ubc.ca Sean Crowe; Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5847 -123.5008 439410377 832311 273 20 444 25 SRX4496748 Unrestricted 54.96 Metagenome 3300000655 *Microbiome Draft Forest soil microbial communities from Amazon Forest, Brazil Forest soil microbial communities from Amazon forest - 2010 replicate II A100 DOE Joint Genome Institute (JGI) 3300000655 Metagenome Analysis released based on JGI ITS Yes Yes jorge@uta.edu, jmrodrigues@ucdavis.edu Jorge Rodrigues, Jorge L. Rodrigues Yes 30083144 Environmental Terrestrial Tropical forest Soil Bulk soil Forest soil -10.171667 -62.7875 217059300 598165 245 6 466 14 Unrestricted 0.0 Metagenome 3300037453 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_010 DOE Joint Genome Institute (JGI) 3300037453 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -19.6574 146.8351 1816100629 2869931 1479 40 2371 41 SRX9161800 Unrestricted 14.07 Metagenome 3300000967 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0144 DOE Joint Genome Institute (JGI) 3300000967 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 14.52 -26.0 10970046 22548 15 12 17 12 SRX1983309 Unrestricted 0.0 Metagenome 3300014849 *Microbiome Permanent Draft Danish lakes Microbial communities Depth profiles Lake Almind and Hund Sediment microbial communities from Lake Almind, Silkeborg, Region Midtjylland, Denmark - ALS_02.07.12_sediment_0-5cm re-submission with coverage Odense University Hospital 3300014849 Metagenome Analysis MEGAHIT v1.1.1 released by JGI data releasing policy Yes Yes atreusch@biology.sdu.dk Alexander Treusch No Environmental Aquatic Lake Freshwater Sediment Sediment 56.148 9.546 36674 111 1 0 3 0 0.0 Metagenome 3300046398 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA071-TGU DOE Joint Genome Institute (JGI) 3300046398 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6772 -83.4783 398363600 967262 218 25 385 39 Unrestricted 9.02 Metagenome 3300013272 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100222 University of Pennsylvania 3300013272 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 34222774 64140 26 2 44 7 SRX756679 0.0 Metagenome 3300013718 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00496 Weill Cornell Medical College 3300013718 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.84 -73.86 17866746 33952 12 0 23 0 SRX822465 0.0 Metagenome 3300028176 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_06_06_40m DOE Joint Genome Institute (JGI) 3300028176 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 364740291 718981 358 1 549 5 SRX5244772 Unrestricted 9.79 Metagenome 3300043382 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 187-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043382 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.8579 -107.0926 452698060 1304947 451 21 820 31 Unrestricted 6.96 Metagenome 3300009986 *Microbiome Permanent Draft Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_92 metaG DOE Joint Genome Institute (JGI) 3300009986 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes esinger@lbl.gov; twoyke@lbl.gov Esther Singer; Tanja Woyke No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 30.387 -97.7301 38332961 80874 45 4 101 11 SRX3886481 Unrestricted 0.0 Metagenome 3300001296 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - Naphthalene biodegradation metagenome 13C8doseB DOE Joint Genome Institute (JGI) 3300001296 Metagenome Analysis No Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.292222 -73.604444 4150569 13080 5 2 10 2 Unrestricted 0.0 Metagenome 3300050044 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim1 1-5 DOE Joint Genome Institute (JGI) 3300050044 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.352987 19.047292 562237482 873924 133 19 225 33 Restricted 11.79 Metagenome 7000000466 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763901136 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000466 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 164804937 304829 0 0 0 0 0.0 Metagenome 3300005455 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG DOE Joint Genome Institute (JGI) 3300005455 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 5023443748 13940473 4229 409 6978 826 SRX2740160 Unrestricted 0.0 Metagenome 3300025922 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025922 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 3548085314 7756791 1186 39 2173 86 SRX2745039 Unrestricted 0.0 Metagenome 3300000989 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized - NN357 DOE Joint Genome Institute (JGI) 3300000989 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 398445 1328 31 3 37 4 SRX1986738 Unrestricted 0.0 Metagenome 3300014181 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Venezuela to Iowa, USA - V8 Iowa State University 3300014181 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 7528211 14989 0 4 0 1 SRX1150313 0.0 Metagenome 3300048506 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_110629.NP1 DOE Joint Genome Institute (JGI) 3300048506 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 516564598 1236378 370 54 553 73 Unrestricted 16.96 Metagenome 3300022924 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L089-202R-1 DOE Joint Genome Institute (JGI) 3300022924 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 772826163 1576708 612 117 834 180 SRX4801460 Unrestricted 10.69 Metagenome 3300023266 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4 DOE Joint Genome Institute (JGI) 3300023266 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 306773702 813249 533 31 1046 50 SRX4801283 Unrestricted 7.53 Metagenome 3300006996 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 370425937 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006996 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 22910927 48562 21 0 53 0 0.0 Metagenome 3300025202 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP1896 (SPAdes) DOE Joint Genome Institute (JGI) 3300025202 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 21.06 -150.35 109634034 193984 92 15 159 22 SRX1982438 Unrestricted 0.0 Metagenome 3300035060 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - C12-14 Autonomous University of Barcelona 3300035060 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 13967764 73699 159 0 268 0 0.0 Metagenome 3300028622 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_RA_Trp DOE Joint Genome Institute (JGI) 3300028622 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 215697058 342531 165 0 223 0 SRX5281939 Unrestricted 40.25 Metagenome 3300038640 *Microbiome Permanent Draft Freshwater sediment microbial communities from Chandeleur Islands, USA Vegetated sediment core microbial communities from Chandeleur Islands, USA - JVegC4 University of Alabama 3300038640 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Wetlands Freshwater Sediment Vegetated sediment core 29.862806 -88.841194 18487160 52750 65 2 116 3 0.0 Metagenome 3300011616 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00630 Weill Cornell Medical College 3300011616 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.83 -73.93 28597766 41468 19 0 29 0 SRX822597 0.0 Metagenome 3300022343 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1BM1 JM49 AGRF 3300022343 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 36089400 68388 27 0 29 0 0.0 Metagenome 3300011471 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00789 Weill Cornell Medical College 3300011471 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.81 -73.94 18704636 25762 12 0 13 0 SRX822755 0.0 Metagenome 3300041714 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_129 MetaG AgResearch, New Zealand, Mosgeil 3300041714 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 946874685 1805821 245 34 811 32 0.0 Metagenome 3300032295 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains Ecozone, Canada - Lake 08-184 Genome Quebec 3300032295 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.740348 -79.794679 715644548 1474870 334 52 527 133 0.0 Metagenome 3300022204 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_8_1 DOE Joint Genome Institute (JGI) 3300022204 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Sediment Marine Unclassified sediment 38.03 -122.15 926699308 2005291 829 25 1422 44 SRX4053264 Unrestricted 8.18 Metagenome 3300011549 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00509 Weill Cornell Medical College 3300011549 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.89 -73.85 22544185 34288 16 2 24 5 SRX822478 0.0 Metagenome 3300002091 *Microbiome Permanent Draft Lentic enriched actinobacterial communities from dystrophic bog Grosse Fuchskuhle, Brandenburg, Germany Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome DOE Joint Genome Institute (JGI) 3300002091 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes sarilog@gmail.com Sarahi Garcia Yes 29848762 Environmental Aquatic Lentic Freshwater Unclassified Lentic 53.1666 13.0333 76505445 183257 26 0 52 0 SRX2553661 Unrestricted 0.0 Metagenome 3300019712 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BRT_5-6_MG DOE Joint Genome Institute (JGI) 3300019712 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 107443621 263793 202 13 355 22 SRX3982611 Unrestricted 3.47 Metagenome 3300028051 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_28AUG2017_LD1 DOE Joint Genome Institute (JGI) 3300028051 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 71482320 143944 52 75 50 137 SRX5345910 Unrestricted 19.02 Metagenome 3300046799 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 soil DOE Joint Genome Institute (JGI) 3300046799 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.588192 -123.19405 6.4 601190382 1096891 277 19 543 25 Unrestricted 17.78 Metagenome 3300035644 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS61_12 University of Hohenheim 3300035644 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 118023147 170731 95 3 159 2 0.0 Metagenome 3300057053 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M2P_50_52 DOE Joint Genome Institute (JGI) 3300057053 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0099406 -81.5672344 2254034710 3354570 915 3 1408 0 Unrestricted 16.87 Metagenome 3300048117 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_130306.NP1 DOE Joint Genome Institute (JGI) 3300048117 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 535819376 1109900 379 97 562 182 Unrestricted 19.92 Metagenome 3300009896 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY9 University of New South Wales 3300009896 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 23408867 40439 22 0 41 0 0.0 Metagenome 3300024914 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 97_LOW12 (SPAdes) DOE Joint Genome Institute (JGI) 3300024914 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 39671883 64885 28 0 30 0 SRX2721171 Unrestricted 0.0 Metagenome 3300038323 *Microbiome Draft Bras del Port CELL metagenomes September 2016 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CO71 CELL September 2016 FISABIO - Public Health 3300038323 Metagenome Analysis IDBA v. 1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline water 38.1912 -0.5947 180316024 290840 95 8 148 23 0.0 Metagenome 3300013319 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100537 University of Pennsylvania 3300013319 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4936464 10117 13 7 21 15 SRX756217 0.0 Metagenome 3300070510 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_005-M-20190312-COMP-DNA1 Battelle Memorial Institute 3300070510 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.1235 -119.748517 6.45-6.67 1061982 3546 27 2 43 4 0.0 Metagenome 3300014578 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -PQiagenBeadWash928-11 Weill Cornell Medical College 3300014578 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.96 7329742 10131 7 4 6 3 SRX823466 0.0 Metagenome 3300045158 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_1_F DOE Joint Genome Institute (JGI) 3300045158 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 156123399 178602 90 1 106 2 Unrestricted 118.79 Metagenome 3300028763 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E1_1 DOE Joint Genome Institute (JGI) 3300028763 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 275415679 616875 359 71 533 100 SRX5355819 Unrestricted 0.0 Metagenome 3300002636 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4w-12 DOE Joint Genome Institute (JGI) 3300002636 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 627091 2109 49 4 81 3 SRX1991258 Unrestricted 0.0 Metagenome 3300053759 *Microbiome Permanent Draft Soil microbial communities from Blodgett Forest Research Station, California, USA Soil microbial communities from Blodgett Forest Research Station, California, USA - BWE201412021C1020 (version 2) DOE Joint Genome Institute (JGI) 3300053759 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.912 -120.6615 1430539429 2449233 554 78 906 107 Unrestricted 0.0 Metagenome 3300038944 *Microbiome Permanent Draft Production water microbial communities from oil reservoir in Jiangsu oilfield, Yangzhou, China Production water microbial communities from oil reservoir in Jiangsu oilfield, Yangzhou, China - Jiangsu_W2-71_metaG East China University of Science and Technology 3300038944 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Production water 33.11 120.22 16016811 23852 15 0 23 0 0.0 Metagenome 3300041430 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass leaf microbial community from Lincoln, Canterbury, New Zealand - RGL18_12 MetaG AgResearch, New Zealand, Mosgeil 3300041430 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 421211877 722080 125 517 384 507 0.0 Metagenome 3300020596 *Microbiome Permanent Draft Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP5.G1 DOE Joint Genome Institute (JGI) 3300020596 Metagenome Analysis spades v. 3.10.1 Yes Yes dysumner@ucdavis.edu Dawn Sumner No Environmental Aquatic Lake Freshwater Microbial mats freshwater microbial mat -77.5281 161.59 1291160551 2233967 701 67 1102 109 SRX3539176 Unrestricted 19.8 Metagenome 3300038402 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Sediment microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_South_3 DOE Joint Genome Institute (JGI) 3300038402 Metagenome Analysis metaspades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Wetlands Marine Sediment sediment 26.3584 -80.2982 653650742 1166329 421 18 854 33 SRX9405195 Unrestricted 13.94 Metagenome 3300040786 *Microbiome Permanent Draft Cryoconite microbiome from cyroconite holes in Resolute Bay, NU, Canada Cryoconite microbial community from Resolute Bay, Canada - FullCryo Nanopolish polishing McGill University 3300040786 Metagenome Analysis canu v. 1.8 released by Catherine Maggiori No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Aquatic Sea ice Marine Cryoconite Cryoconite 74.44707 -95.0348 25193561 49222 36 30 41 26 0.0 Metagenome 3300029113 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021310-108 Beijing Genomics Institute (BGI) 3300029113 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 153472051 180017 136 0 175 0 0.0 Metagenome 2149837009 *Microbiome Permanent Draft Mouse gut microbial communities from the University of California, San Diego, USA (4) MouseMetaGen_Dec15_Ind16_HC12 (EtOH) University of California, San Diego 2149837009 Metagenome Analysis SOAP denovo released per JGI data release policy No Yes hchiang@ucsd.edu Hsin-I Chiang No Host-associated Mammals Large intestine Digestive system Cecum Mouse gut 32.42 117.1 269137131 761284 177 4 534 0 0.0 Metagenome 3300044854 *Microbiome Permanent Draft Switchgrass rizosphere microbial communities from Pacific Northwest National Laboratory, Richland, WA, United States Soil microbial communities from switchgrass plot in Kellogg Biological Station, Michigan, United States - EC5031 DOE Joint Genome Institute (JGI) 3300044854 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes james.moran@pnnl.gov James Moran No Environmental Terrestrial Unclassified Soil Agricultural land soil 42.4058 -85.4023 1215103157 2051954 448 32 779 48 Unrestricted 14.82 Metagenome 3300003310 *Microbiome Permanent Draft Down-flow hanging sponge reactor microbial communities from the University of Illinois at Urbana-Champaign, USA Down-flow hanging sponge reactor microbial communities from the University of Illinois at Urbana-Champaign, USA - L1-648F-DHS 3300003310 Metagenome Analysis Newbler released by JGI data releasing policy No Yes nkim41@illinois.edu Kim, Na Kyung Kim No Engineered Bioreactor Sludge DHS reactor Unclassified Down-flow hanging sponge reactor 40.114056 -88.226756 8.5 209399379 212759 54 5 107 3 0.0 Metagenome 3300049767 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A15_B_4_drought DOE Joint Genome Institute (JGI) 3300049767 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 276162129 641245 431 30 824 43 Unrestricted 11.87 Metagenome 3300012160 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT630_2 DOE Joint Genome Institute (JGI) 3300012160 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9231 -106.9514 174603579 416879 244 10 471 16 SRX3368946 Unrestricted 0.0 Metagenome 3300013558 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100756 University of Pennsylvania 3300013558 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 1070066 3120 7 2 11 7 SRX756094 0.0 Metagenome 3300071017 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_044-M-20180530-COMP-DNA1 3300071017 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 38685286 120419 131 4 269 10 0.0 Metagenome 3300008148 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human throat microbial communities from NIH, USA - visit 2, subject 763961826 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008148 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human 39.0042816 -77.1012173 118580190 188927 80 0 116 0 SRX024966 0.0 Metagenome 3300055460 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.4W.11 SIP fraction DOE Joint Genome Institute (JGI) 3300055460 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 220375075 380150 247 35 395 59 Unrestricted 24.06 Metagenome 3300006886 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada T0 (3) T65 (live) enrichments of Methanogenic microbial communities using Athabascan oil sands Shell Corporation 3300006886 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 80645783 138443 71 0 105 0 0.0 Metagenome 3300029301 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Indian Ocean - SRH1 Michigan State University 3300029301 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 1.26600833 103.8333333 45113901 129450 30 0 74 4 0.0 Metagenome 3300020240 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B000000477 (ERX556046-ERR598982) CEA Genoscope 3300020240 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -34.8477 18.1136 246927319 645295 273 26 457 52 0.0 Metagenome 3300011878 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01161 Weill Cornell Medical College 3300011878 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.68 -73.91 48642271 75383 23 0 37 0 SRX823116 0.0 Metagenome 3300030222 *Microbiome Permanent Draft Coastal marine microbial mats from various locations Stromatolite biofilm microbial communities from Shark Bay, Australia - S2 Massachusetts Institute of Technology 3300030222 Metagenome Analysis Megahit v. 1.0.2 released by JGI data releasing policy No Yes skoog@mit.edu Emilie Skoog No Environmental Aquatic Coastal Marine Sediment Stromatolite biofilm -26.141967 114.236685 114747609 124763 17 1 18 2 0.0 Metagenome 3300012482 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.130510 DOE Joint Genome Institute (JGI) 3300012482 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 81597500 221220 181 22 397 29 SRX3527362 Unrestricted 0.0 Metagenome 3300013086 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_300m DOE Joint Genome Institute (JGI) 3300013086 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; shallam@interchange.ubc.ca; jkjarett@lbl.gov Ramunas Stepanauskas; Steven Hallam; Jessica Jarett No Environmental Aquatic Lake Freshwater Unclassified freshwater 50.0621 -124.7214 291302445 711066 263 1 465 3 SRX3570960 Unrestricted 10.76 Metagenome 3300049789 *Microbiome Permanent Draft Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama - S008_CH15_fluctuating_T2 DOE Joint Genome Institute (JGI) 3300049789 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes njbouskill@lbl.gov Nicholas Bouskill No Environmental Terrestrial Tropical forest Soil Bulk soil Soil 9.17936 -79.8296 427363923 1165514 360 20 670 28 Unrestricted 7.44 Metagenome 3300042973 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_CSTR_060 (downsampled for mapping) DOE Joint Genome Institute (JGI) 3300042973 Metagenome Analysis metaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 21020152 21930 17 0 17 0 SRX12726528, SRX12726526 Unrestricted 0.0 Metagenome 3300020375 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000953 (ERX555974-ERR599132) CEA Genoscope 3300020375 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -5.2771 -85.2995 589779224 1418426 335 31 637 51 0.0 Metagenome 3300000899 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 7 DOE Joint Genome Institute (JGI) 3300000899 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 9353869 23035 48 9 95 11 SRX1984135 Unrestricted 0.0 Metagenome 3300030444 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021312-111 Beijing Genomics Institute (BGI) 3300030444 Metagenome Analysis Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 181987039 235125 150 0 216 0 0.0 Metagenome 3300002187 *Microbiome Permanent Draft Soil-wheat microbial communities from Canadian soil - Hydroxyproline Soil-wheat microbial communities from Ontario, Canada - Hydroxyproline 3300002187 Metagenome Analysis released by JGI data releasing policy No Yes finan@mcmaster.ca Turlough Finan No Environmental Terrestrial Unclassified Soil Agricultural land 43.64083333 -80.40972222 7.4 26320 28 0 0 0 0 0.0 Metagenome 3300006255 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 737052003 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006255 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 128583386 206634 135 0 216 0 0.0 Metagenome 3300037860 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Tildeniella torsiva UHER 1998/13D and co-occurring heterotrophs from rock surface from Slovak Paradise National Park, Hrabusice, Kosice Region, Slovakia - 20190130_56 DOE Joint Genome Institute (JGI) 3300037860 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Rock surface 48.955 20.4147 106473287 124387 14 2 15 7 SRX9169240 Unrestricted 142.01 Metagenome 3300021111 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 30APR2008 epilimnion DOE Joint Genome Institute (JGI) 3300021111 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 16803924 35616 32 3 48 9 Unrestricted 0.0 Metagenome 7000000421 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 686765762 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000421 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 73484239 127736 0 0 0 0 0.0 Metagenome 3300038589 *Microbiome Permanent Draft Freshwater lake viral communities from Lake Michigan, near Chicago, USA Freshwater lake viral communities from Lake Michigan, near Chicago, USA- Montrose140805.1V Genewiz Inc., Loyola University 3300038589 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.9668 -87.637 36883693 73023 33 0 46 0 0.0 Metagenome 3300026064 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLA_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026064 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.224518 -122.019257 81679671 213121 209 2 305 1 SRX7187022 Unrestricted 0.0 Metagenome 3300041057 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - T5D7 IDBA-UD 100x Baseclear 3300041057 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 94306920 133852 176 8 262 6 0.0 Metagenome 3300051664 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Lindberg, Bavaria, Germany - BW_TH_011D DOE Joint Genome Institute (JGI) 3300051664 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 49.039609 13.314697 995880869 2295384 419 59 835 94 Unrestricted 9.23 Metagenome 3300026323 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_02_20cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026323 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 585943677 1069866 384 15 709 28 SRX2727699 Unrestricted 0.0 Metagenome 3300011680 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00066 Weill Cornell Medical College 3300011680 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.64 -73.96 26879868 38371 11 1 16 1 SRX822066 0.0 Metagenome 3300036763 *Microbiome Permanent Draft Microbial communities from various locations in USA and France Sewage microbial communities from WWTP in Marseille, France - spike1 DOE Joint Genome Institute (JGI) 3300036763 Metagenome Analysis metaspades v. 3.13.0 Yes Yes twoyke@lbl.gov; lapennacchio@lbl.gov Tanja Woyke; Len Pennacchio No Engineered WWTP Raw wastewater Influent Municipal and sewage sewage 43.11 5.95 1096328173 1635424 719 27 1091 36 SRX8289091 Unrestricted 11.45 Metagenome 3300040434 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_025-M-20140327-COMP-DNA1 Argonne National Laboratory 3300040434 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 4136255 12128 27 4 35 4 ERX2133960 0.0 Metagenome 3300037572 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR09_18 DOE Joint Genome Institute (JGI) 3300037572 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Crustal Fluids crustal fluids 47.7534 -127.7638 948120505 2172703 757 213 1224 351 SRX9096392 Unrestricted 21.35 Metagenome 3300007553 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.689 DOE Joint Genome Institute (JGI) 3300007553 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 138835008 270338 170 42 252 68 SRX2753566 Unrestricted 0.0 Metagenome 3300026944 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G01K2-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026944 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 63805646 191684 190 6 374 10 SRX1991291 Unrestricted 0.0 Metagenome 3300014594 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 599_4M Beijing Genomics Institute (BGI) 3300014594 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 19879465 29950 23 1 34 3 ERX491260 0.0 Metagenome 3300065616 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 804 in Youngstown, Alberta, Canada - S00JY_0713 Microbiome Insights 3300065616 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.42228558 -111.0505801 7668478 11715 15 0 28 0 0.0 Metagenome 3300025235 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP1483 (SPAdes) DOE Joint Genome Institute (JGI) 3300025235 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -28.41 179.14 104260121 228207 136 0 238 0 SRX1982551 Unrestricted 0.0 Metagenome 3300001689 *Microbiome Permanent Draft Ecteinascidia turbinata symbiotic microbial communities from the Caribbean mangrove Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 4 DOE Joint Genome Institute (JGI) 3300001689 Metagenome Analysis Yes Yes schofiem@umich.edu, schofiem@umich.edu; davidhs@umich.edu Michael Schofield, Michael Schofield; David Sherman No Host-associated Tunicates Unclassified Ascidians Unclassified Ecteinascidia turbinata 24.5512 -81.8083 847549657 1690681 13 13 27 63 SRX2554498 Unrestricted 0.0 Metagenome 3300069419 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_003-O-20170711-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069419 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 44813328 129024 42 8 93 7 0.0 Metagenome 3300060671 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_003-O-20210805-comp-1 DOE Joint Genome Institute (JGI) 3300060671 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tundra Soil Unclassified Terrestrial soil 68.640255 -149.642461 918482234 1594003 413 17 732 17 Unrestricted 20.19 Metagenome 3300009910 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA12 University of New South Wales 3300009910 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au; z5119396@unsw.edu.au Holly Bennett; Viet Hung Nguyen No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 52071975 73712 37 2 56 2 0.0 Metagenome 3300060416 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210601_05_17 DOE Joint Genome Institute (JGI) 3300060416 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 653538689 970201 266 87 352 105 Unrestricted 26.82 Metagenome 2051223003 *Microbiome Permanent Draft Human fecal microbial communities from Orebro University Hospital, Sweden, of individuals with Crohns disease Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10371 University of Maryland School of Medicine 2051223003 Metagenome Analysis released per JGI data release policy No Yes cmfraser@som.umaryland.edu Claire Fraser No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 59.274717 15.230656 17951689 37960 0 0 0 0 0.0 Metagenome 3300001667 *Microbiome Permanent Draft Marine microbial communities from the Santa Barbara Basin, California, USA barOA 3300001667 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes dsjones@umn.edu, daniel.s.jones@nmt.edu Daniel Jones No Environmental Aquatic Cold seeps Marine Sediment Marine 13.2648 -59.4253 11034474 23686 1606 82 4746 158 0.0 Metagenome 3300048934 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_5_C (version 2) DOE Joint Genome Institute (JGI) 3300048934 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 171632740 212373 108 1 138 1 Restricted 0.0 Metagenome 3300027417 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A1-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300027417 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 13688398 44209 68 3 155 3 SRX1991115 Unrestricted 0.0 Metagenome 3300018416 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300018416 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1504850499 3393112 1116 110 2250 189 SRX4068470 Unrestricted 18.55 Metagenome 3300002500 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBA88_21-ST J. Craig Venter Institute (JCVI) 3300002500 Metagenome Analysis released per JGI data release policy No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 275778670 780586 42 31 98 43 0.0 Metagenome 3300000782 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion v2 (version 2) DOE Joint Genome Institute (JGI) 3300000782 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300030308 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from adenoma patient in Toronto, Canada - MG100189 University of Michigan 3300030308 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 43.65 -79.38 11725750 25249 34 0 59 0 0.0 Metagenome 3300025729 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025729 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 565130565 1084925 361 13 544 24 Unrestricted 0.0 Metagenome 3300001955 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Gulf of Panama, Panama - GS021 J. Craig Venter Institute (JCVI) 3300001955 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine 8.129167 -79.69111 85347158 150154 70 0 87 0 0.0 Metagenome 7000000112 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 158944319 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000112 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 129159305 213991 0 0 0 0 0.0 Metagenome 3300049892 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Virginia, USA - poseycreek_2019_sed_WHONDRS-S19S_0013 DOE Joint Genome Institute (JGI) 3300049892 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 38.8952 -78.1476 225147751 602810 800 7 1612 12 Restricted 13.24 Metagenome 3300069605 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Mid-Atlantic, VA, USA - BLAN_038-M-20170714-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069605 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Farm Terrestrial soil 39.06026 -78.07164 16350127 53378 99 3 165 7 0.0 Metagenome 3300042632 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A24 University of California, Davis 3300042632 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 193850685 551351 276 5 511 9 0.0 Metagenome 3300038567 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A35_5cm_0.25M University of Tennessee 3300038567 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 245786883 626677 215 6 458 9 SRX710575 0.0 Metagenome 3300012509 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_6 DOE Joint Genome Institute (JGI) 3300012509 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Environmental Terrestrial Unclassified Soil Unclassified soil 35.9076 -79.0506 158887335 421523 267 11 603 21 SRX3527436 Unrestricted 0.0 Metagenome 3300011894 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00279 Weill Cornell Medical College 3300011894 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.73 -73.99 50516975 81327 23 0 32 0 SRX822252 0.0 Metagenome 2166559001 *Microbiome Permanent Draft Contaminated Planktothrix microbial communities from Lake Langersee Freshwater microbial communities from Lake Langersee, Germany - 723 University of Oslo 2166559001 Metagenome Analysis newbler released per JGI data release policy No Yes ave.tooming-klunderud@bio.uio.no Ave Tooming-Klunderud No Environmental Aquatic Lake Freshwater Unclassified Contaminated Plankothrix 52.5353 13.9668 15634182 22775 11 0 14 0 0.0 Metagenome 3300009614 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_4_150 DOE Joint Genome Institute (JGI) 3300009614 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 232791997 372860 162 0 252 0 SRX3002042 Unrestricted 0.0 Metagenome 3300037258 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in California, United States - CAS_10 DOE Joint Genome Institute (JGI) 3300037258 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil 37.0 -122.2 3578441202 5069319 770 85 1145 115 SRX8383161 Unrestricted 15.19 Metagenome 3300043491 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-288 Genome Quebec 3300043491 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 54.285684 -104.640543 1102544943 2567062 558 144 1032 250 0.0 Metagenome 3300046374 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA015-TGU DOE Joint Genome Institute (JGI) 3300046374 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6772 -83.4783 451422316 1020016 218 20 397 42 Unrestricted 9.6 Metagenome 3300048630 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from North Pacific Ocean - CTD007A DOE Joint Genome Institute (JGI) 3300048630 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 9.838067 -104.2912 871376927 1374369 403 60 602 111 Unrestricted 23.48 Metagenome 3300031602 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from Ellis Fjord, Antarctic Ocean - #260 DOE Joint Genome Institute (JGI) 3300031602 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5958 78.1913 430745788 944471 181 232 270 369 SRX5649649 Unrestricted 15.0 Metagenome 3300008502 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160421117 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008502 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 118459572 157067 80 0 112 0 0.0 Metagenome 3300013010 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNA DOE Joint Genome Institute (JGI) 3300013010 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes bcampb7@clemson.edu Barbara Campbell Yes 29703736 Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 37.1043 -76.1811 1523809060 3122886 492 442 775 626 SRX5057955 Unrestricted 0.0 Metagenome 3300007713 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764325968 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007713 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 102256971 179271 129 0 196 1 0.0 Metagenome 3300050547 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf microbial communities from Olympic Peninsula, Washington, USA - D0_SEK1_4 DOE Joint Genome Institute (JGI) 3300050547 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Alder tree leaf 48.165 -124.244 169796771 221820 14 12 24 18 Unrestricted 79.11 Metagenome 3300045930 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P24SSC2_190915_f DOE Joint Genome Institute (JGI) 3300045930 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 689159963 1110169 207 0 361 0 SRX20650048 Unrestricted 11.82 Metagenome 3300036176 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C7-7B DOE Joint Genome Institute (JGI) 3300036176 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 48587311 157408 135 5 257 3 SRX8814842 Unrestricted 4.25 Metagenome 3300006810 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 DOE Joint Genome Institute (JGI) 3300006810 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes chenf@umces.edu, chenf@umces.edu; bcampb7@clemson.edu Feng Chen, Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.12 -75.25 966487264 2298400 188 2 266 3 SRX2838769, SRX3300551, SRX3300552 Unrestricted 0.0 Metagenome 3300027145 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepA_8h DOE Joint Genome Institute (JGI) 3300027145 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 150975005 297677 112 9 155 11 SRX5245222 Unrestricted 19.7 Metagenome 3300019473 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 5 Autonomous University of Barcelona 3300019473 Metagenome Analysis SPAdes 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 2824991 5161 3 0 9 0 0.0 Metagenome 3300003386 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09.2A5-11 DOE Joint Genome Institute (JGI) 3300003386 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 190080 642 25 0 30 1 SRX2576246 Unrestricted 0.0 Metagenome 3300049982 *Microbiome Permanent Draft Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA - CNF2NT9 DOE Joint Genome Institute (JGI) 3300049982 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sydneyg@ucr.edu Sydney Glassman No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 33.6953 -117.4713 2770085597 4376673 841 77 1105 98 Unrestricted 19.08 Metagenome 3300029844 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35734 Beijing Genomics Institute (BGI) 3300029844 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 230766308 309891 193 1 278 1 0.0 Metagenome 3300039157 *Microbiome Draft Groundwater prokaryotic communities from Qaidam Basin Groundwater microbial communities from the pristine aquifer in Qaidam Basin, China - S1 Magigene technology co., LTD. 3300039157 Metagenome Analysis Velvet v. 3.3 released by JGI data releasing policy Yes Yes 3005160037@cugb.edu.cn Liang Guo No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.51215 94.95725 954160730 1388873 230 12 466 23 0.0 Metagenome 3300011984 *Microbiome Permanent Draft Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong - Raw_water_201107 University of Hong Kong 3300011984 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Drinking water Freshwater Unclassified Drinking water treatment plant 119641118 333943 61 8 128 13 SRX390512 0.0 Metagenome 3300047476 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from East River, Crested Butte, Colorado, USA - eastriver_2019_sw_WHONDRS-S19S_0100 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047476 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9223 -106.9514 513735508 841647 492 164 797 230 Unrestricted 0.0 Metagenome 3300038435 *Microbiome Permanent Draft Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA - Service water control v2 Argonne National Laboratory 3300038435 Metagenome Analysis Megahit v. 1.0.6.1 Release as per PI request (GOLD-1409) SM 8.16.2021 No Yes lmmomper@gmail.com; maggie@northwestern.edu Caitlin Casar; Magdalena Osburn No Environmental Aquatic Groundwater Freshwater Unclassified groundwater 44.350833 -103.765833 7 490242941 588364 205 16 253 21 0.0 Metagenome 3300070586 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_005-M-20200805-COMP-DNA1 Battelle Memorial Institute 3300070586 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.149339 -99.251928 7.03-8.05 18061147 55404 48 1 89 2 0.0 Metagenome 3300026640 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1095 (SPAdes) DOE Joint Genome Institute (JGI) 3300026640 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 2787641 9459 33 4 63 5 SRX3311887 Unrestricted 0.0 Metagenome 3300000544 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Bottom permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (65 cm)-Day0 454 University of Tennessee 3300000544 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 0 0 0 0 0 0 0.0 Metagenome 3300027538 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepB_8d DOE Joint Genome Institute (JGI) 3300027538 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 262577963 588339 249 19 418 41 SRX5245188 Unrestricted 10.36 Metagenome 3300047611 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_1_E DOE Joint Genome Institute (JGI) 3300047611 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 158874865 185165 89 1 109 1 Restricted 0.0 Metagenome 3300025328 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jul07 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025328 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 20954758 52590 24 22 37 34 SRX2565358 Unrestricted 0.0 Metagenome 3300046372 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA013-BCT DOE Joint Genome Institute (JGI) 3300046372 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6779 -83.4786 536642298 1306695 258 25 513 51 Unrestricted 8.63 Metagenome 3300069393 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Moab, Southern Rockies & Colorado Plateau, UT, USA - MOAB_001-M-20170521-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069393 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.24833 -109.38827 115223340 342470 200 9 383 14 0.0 Metagenome 3300054974 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_RHK1_5_to_RHK1 DOE Joint Genome Institute (JGI) 3300054974 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.154 -124.211 1046894341 2039336 584 209 860 306 Unrestricted 0.0 Metagenome 3300056703 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.4C.9 SIP fraction DOE Joint Genome Institute (JGI) 3300056703 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 117922342 212623 56 0 109 0 Unrestricted 27.68 Metagenome 3300001716 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-42 DOE Joint Genome Institute (JGI) 3300001716 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 49.9996 -144.9998 53391889 104250 44 0 62 0 Unrestricted 0.0 Metagenome 3300031604 *Microbiome Permanent Draft Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP4 DOE Joint Genome Institute (JGI) 3300031604 Metagenome Analysis spades v. 3.12.0 Yes Yes rlsimister@gmail.com Rachel Simister No Environmental Aquatic Lake Freshwater Sediment sediment -2.7726 121.4938 670074149 1322585 566 0 1088 1 SRX6422663 Unrestricted 14.71 Metagenome 3300009612 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3651_4511 DOE Joint Genome Institute (JGI) 3300009612 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic 3.5037 -38.9985 50668909 72350 335 15 100 7 SRX2753930 Unrestricted 0.0 Metagenome 3300020256 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000929 (ERX556010-ERR599067) CEA Genoscope 3300020256 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 2.1008 -84.5107 182323738 451124 171 17 282 31 0.0 Metagenome 3300043647 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 334-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043647 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9528 -107.0672 254240678 782683 408 29 763 60 Unrestricted 7.37 Metagenome 3300038749 *Microbiome Permanent Draft Lab enriched soil microbial communities from farm land in Gulf Coast, Texas, United States Lab enriched soil microbial communities from farm land in Gulf Coast, Texas, United States - BPC US Diesel Yokohama City University 3300038749 Metagenome Analysis SPAdes v. 3.13.2 released by Jiro Mori Yes Yes morij@yokohama-cu.ac.jp Jiro Mori No Environmental Terrestrial Unclassified Soil Agricultural land Soil 29.0 -96.0 82808900 128767 29 4 33 6 0.0 Metagenome 3300042930 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-324 Genome Quebec 3300042930 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.172812 -119.327375 1251542595 2667986 477 163 887 314 0.0 Metagenome 3300007981 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1556A-3 DOE Joint Genome Institute (JGI) 3300007981 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2022 -123.941 245662872 486861 377 165 603 296 SRX2753741 Unrestricted 0.0 Metagenome 3300043055 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8CT15 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043055 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 11228696 33000 67 3 107 7 SRX8379635 Unrestricted 27.2 Metagenome 3300008504 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 159753524 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008504 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 92880353 128356 99 1 95 1 0.0 Metagenome 3300070985 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_042-M-20170801-COMP-DNA1 3300070985 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 52175135 144606 82 12 170 14 0.0 Metagenome 3300007498 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 763840445 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007498 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 136034381 165579 91 0 125 0 0.0 Metagenome 2236876018 *Microbiome Permanent Draft Saline water concentrator pond microbial communities from Bras del Port saltern, Santa Pola, Spain Saline water concentrator pond microbial communities from Bras del Port saltern, Spain - SS33 GATC-Biotech AG, Konstanz, Germany 2236876018 Metagenome Analysis released per JGI data release policy No Yes abf@us.es Ana Fernandez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline water concentrator pond 38.11 -0.36 219035789 615708 516 12 1020 2 0.0 Metagenome 3300029842 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35636 Beijing Genomics Institute (BGI) 3300029842 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 216406362 274166 191 0 266 0 0.0 Metagenome 3300041473 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover leaf microbial community from Lincoln, Canterbury, New Zealand - WCL17_5 MetaG AgResearch, New Zealand, Mosgeil 3300041473 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 559799837 678691 73 1201 205 1052 0.0 Metagenome 3300011982 *Microbiome Permanent Draft Human oral microbial communities from Beijing, China Human oral microbial communities from Beijing, China - VLP3 Beijing Institute of Life Science, Chinese Academy of Sciences 3300011982 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Unclassified Human oral 39.9 116.3 167406601 313832 99 4 182 3 0.0 Metagenome 3300003618 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI037_S3LV_120m_DNA DOE Joint Genome Institute (JGI) 3300003618 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 284430813 582012 272 17 402 28 Unrestricted 0.0 Metagenome 3300049984 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 012-ER18-SC-SDNA (version 2) DOE Joint Genome Institute (JGI) 3300049984 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9218 -106.9521 1168587757 2760983 663 32 1351 55 Unrestricted 0.0 Metagenome 3300070659 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_010-O-20200806-COMP-DNA1 3300070659 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 50037877 144981 99 4 190 4 0.0 Metagenome 3300029259 *Microbiome Permanent Draft ACE Virus Marine viral community from the Austral Polar Province, Southern Ocean - ACE 070VCD University of Michigan 3300029259 Metagenome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes duhaimem@umich.edu Melissa Duhaime No Environmental Aquatic Unclassified Marine Unclassified Marine -67.0928 145.0131 139086104 233517 109 114 117 204 0.0 Metagenome 3300003957 *Microbiome Permanent Draft Activated sludge microbial communities from Ingolstadt, Germany, from a nitrification basin Activated sludge microbial communities from Ingolstadt, Germany, from a nitrification basin Aalborg University 3300003957 Metagenome Analysis CLC released per JGI data release policy No Yes wagner@microbial-ecology.net Michael Wagner No Engineered Wastewater Unclassified Activated Sludge Unclassified wastewater 48.7 11.42 12071347 18363 4 0 4 0 0.0 Metagenome 3300003665 *Microbiome Draft Coalbed water microbial communities from the Lithgow State Coal Mine, New South Wales, Australia Coalbed water microbial communities from the Lithgow State Coal Mine, New South Wales, Australia (LSCM4 Extra Sample 4) 3300003665 Metagenome Analysis LSCM4 Extra Sample 4 released by JGI data releasing policy Yes Yes john_webster89@hotmail.com John Webster No Environmental Aquatic Groundwater Freshwater Coalbed water Coalbed water -33.460524 150.168149 123312788 218816 240 3 193 2 0.0 Metagenome 3300050315 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_79 DOE Joint Genome Institute (JGI) 3300050315 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.598 161.007 357868880 553082 51 15 61 33 SRX18236976 Restricted 55.58 Metagenome 3300022328 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Lake Baghdad, Rottnest Island (WA - Australia) - LBBM1 JM46 AGRF 3300022328 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.994794 115.523776 28283832 56116 36 3 49 2 0.0 Metagenome 2209111000 *Microbiome Draft Soil microbial communities from four geographically distinct crusts in the Colorado Plateau and Sonoran desert Soil microbial communities from Colorado Plateau, Greene Butte sample - Dark Crust, Colorado Plateau, Green Butte DOE Joint Genome Institute (JGI) 2209111000 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes elbrodie@lbl.gov, ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Sand Soil Desert Soil 38.714972 -109.692944 396718301 1058313 343 0 780 0 Unrestricted 0.0 Metagenome 3300000542 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (35 cm)-Day0 454 University of Tennessee 3300000542 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 0 0 0 0 0 0 0.0 Metagenome 3300001556 *Microbiome Finished Human fecal microbial communities from the University of Tokyo, Japan, of healthy Japanese infants and adults Human fecal microbial communities from the University of Tokyo - healthy human sample In-B, Infant, Male 3300001556 Metagenome Analysis PCAP released per Nikos No Yes hattori@k.u-tokyo.ac.jp Hattori M Yes 17916580 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 35.71 139.76 0 0 0 0 0 0 0.0 Metagenome 3300051662 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_CSTR_216 (version 2) DOE Joint Genome Institute (JGI) 3300051662 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 11607734 12259 12 0 10 0 SRX12727510, SRX12727511, SRX12727512 Restricted 0.0 Metagenome 3300038348 *Microbiome Permanent Draft Marine microbial communities from the Gulf of Mexico to study Ocean acidification Marine microbial communities from the Gulf of Mexico to study Ocean acidification - EN_58 - GOM58 Georgia Institute of Technology 3300038348 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 26.005861 -92.366056 136344452 250432 158 0 268 0 0.0 Metagenome 3300037574 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Seawater microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR14_NA01 DOE Joint Genome Institute (JGI) 3300037574 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Unclassified seawater 47.7681 -127.7681 797005095 1686454 602 142 992 242 SRX9096534 Unrestricted 15.28 Metagenome 3300049680 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I13_B_3_drought DOE Joint Genome Institute (JGI) 3300049680 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 173292786 413618 325 23 643 39 Unrestricted 12.69 Metagenome 3300059766 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1546A-02 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059766 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2311 -123.8825 142066377 310267 148 5 233 3 SRX2753621 Unrestricted 0.0 Metagenome 3300007891 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human Mid vagina microbial communities from NIH, USA - visit 2, subject 763577454 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007891 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Midpoint, Midpoint vagina Human 39.0042816 -77.1012173 4423401 6095 5 0 9 0 0.0 Metagenome 3300026062 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026062 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.052479 -121.7687 102011470 241125 167 2 264 3 SRX7181927 Unrestricted 0.0 Metagenome 3300022235 *Microbiome Permanent Draft Anaerobic microbial community of wastewater bioreactor in Changsha, Hunan, China Activated sludge microbial communities from anaerobic bioreactor in Hunan University, Changsha, China - 9 Beijing Novogene Bioinformatics Technology Co., Ltd 3300022235 Metagenome Analysis IDBA v.1.1.1 released by JGI data releasing policy No Yes yuezheng@uw.edu Yue Zheng No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 28.2127 113.0106 394979227 716670 483 0 690 2 0.0 Metagenome 7000000241 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human subgingival plaque microbial communities from NIH, USA - visit 2, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000241 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human 39.0042816 -77.1012173 47700993 88866 0 0 0 0 0.0 Metagenome 3300026942 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 63 (SPAdes) DOE Joint Genome Institute (JGI) 3300026942 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 85822218 218119 108 0 222 1 SRX1985412 Unrestricted 0.0 Metagenome 3300036495 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T100 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036495 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 74478534 128899 112 0 198 0 SRX4415310, SRX7705522 Unrestricted 0.0 Metagenome 3300036920 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5NT15 DOE Joint Genome Institute (JGI) 3300036920 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 485408806 1211505 674 39 1112 62 SRX8379436 Unrestricted 5.79 Metagenome 3300014592 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00388 Weill Cornell Medical College 3300014592 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.73 -73.95 14627324 28683 12 0 17 0 SRX822359 0.0 Metagenome 3300024318 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 46D DOE Joint Genome Institute (JGI) 3300024318 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 275991527 538078 184 11 270 24 SRX4465391 Unrestricted 20.3 Metagenome 3300038656 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from North Angle Lake, Antarctica - #70 Australian Centre for Ecogenomics 3300038656 Metagenome Analysis Spades v. 3.13.0 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.640383 77.909033 288787464 508229 102 11 172 40 0.0 Metagenome 3300027306 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Colum_RepB_8d DOE Joint Genome Institute (JGI) 3300027306 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 224038971 472239 169 20 238 31 SRX5245454 Unrestricted 14.05 Metagenome 3300021424 *Microbiome Permanent Draft Freshwater microbial communities from Lake Tanganyika, Tanzania Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015009 Mahale N1 surface DOE Joint Genome Institute (JGI) 3300021424 Metagenome Analysis spades v. 3.11.1-check Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater lake -5.7366 29.9194 1125876455 2035601 379 75 623 136 SRX4818188 Unrestricted 52.85 Metagenome 3300048932 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_5_A (version 2) DOE Joint Genome Institute (JGI) 3300048932 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 160053033 205475 95 1 118 2 Restricted 0.0 Metagenome 3300000784 *Microbiome Permanent Draft Human gut microbial communities from Waterloo, Canada Human gut microbiome from Waterloo, Canada, sample Cosmids University of Waterloo 3300000784 Metagenome Analysis released per JGI data release policy No Yes itskathylam@gmail.com Kathy Lam No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 43.4706 -80.5361 0 0 0 0 0 0 0.0 Metagenome 3300070746 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_043-O-20160828-COMP-DNA1 3300070746 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 31232077 93296 48 2 95 5 0.0 Metagenome 3300046690 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere DOE Joint Genome Institute (JGI) 3300046690 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1214 -123.2715 1089010000 1774886 325 112 547 142 Unrestricted 15.54 Metagenome 7000000114 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160643649 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000114 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 11011069 22586 0 0 0 0 0.0 Metagenome 3300043109 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - Beaver6Rectum1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043109 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Rectum rectum 49.18 -122.54 260445919 450748 183 7 311 8 SRX8346781 Unrestricted 25.79 Metagenome 3300032369 *Microbiome Permanent Draft STAs constructed wetland biome Wetland sediment microbial communities from Everglades, Florida, USA - STA79-Sample07_1 Combine7 University of Florida 3300032369 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy No Yes ng.hanh24@gmail.com Hanh Nguyen No Environmental Aquatic Wetlands Freshwater Sediment sediment 26.38 -80.51 6.6-8.4 108307475 153893 84 3 177 0 0.0 Metagenome 3300022729 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU2 DOE Joint Genome Institute (JGI) 3300022729 Metagenome Analysis spades v. 3.11.1-check Yes Yes baldrian@biomed.cas.cz; kostelecke.uzeniny@seznam.cz Petr Baldrian; Tomas Vetrovsky No Host-associated Plants Unclassified Roots Unclassified roots 49.044 13.617 26123628 52558 33 16 46 23 SRX4456787 Unrestricted 61.82 Metagenome 3300008123 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit number 3 of subject 159510762 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008123 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 127998466 187433 139 0 195 0 0.0 Metagenome 3300011892 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00293 Weill Cornell Medical College 3300011892 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.7 -74.01 55603539 81082 23 0 37 0 SRX822266 0.0 Metagenome 3300047195 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2013 ID1-MC_37cm DOE Joint Genome Institute (JGI) 3300047195 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.2149 19.0279 249864463 444313 130 3 186 4 Restricted 37.5 Metagenome 3300041919 *Microbiome Finished Marine bacterial communities from Black Sea, Georgia Marine viral communities from Black Sea, Poti, Georgia ? BS36 NCDC Lugar Center, Georgia 3300041919 Metagenome Analysis Denovo v. 3.2 released by JGI data releasing policy No Yes iakusradze@pha.ge Ia Kusradze No Environmental Aquatic Unclassified Marine Unclassified Marine 42.1583 41.6714 20867874 28490 10 3 13 3 0.0 Metagenome 3300021242 *Microbiome Permanent Draft Environmental DNA from river Freshwater microbial communities from Jinzu River in Toyama Prefecture, Japan-20170104_2, permeate Toyama Prefectural University 3300021242 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic River Freshwater Unclassified freshwater 36.59547 137.18744 70275443 225027 26 4 55 7 0.0 Metagenome 3300031220 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #122 DOE Joint Genome Institute (JGI) 3300031220 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 291911351 569684 128 22 167 40 SRX5649409 Unrestricted 65.45 Metagenome 3300001088 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O2 DOE Joint Genome Institute (JGI) 3300001088 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 7030713 23020 144 82 276 142 SRX3311922 Unrestricted 0.0 Metagenome 3300003876 *Microbiome Permanent Draft Black smoker hydrothermal chimney microbial communities from Manus Basin, Bismarck Sea Black smoker hydrothermal chimney microbial communities from Manus Basin, Bismarck Sea - 373A Max Planck Institute for Marine Microbiology 3300003876 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes ppjevac@mpi-bremen.de, pjevac@microbial-ecology.net Petra Pjevac No Environmental Aquatic Hydrothermal vents Marine Black smokers Black smoker hydrothermal chimney 143175104 188890 27 3 30 5 0.0 Metagenome 3300049894 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB6 DOE Joint Genome Institute (JGI) 3300049894 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 98114677 254477 216 3 458 5 Restricted 28.05 Metagenome 3300012971 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama - MetaG Plot_1 DOE Joint Genome Institute (JGI) 3300012971 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes cpan@ou.edu Chongle Pan No Environmental Terrestrial Tropical forest Soil Bulk soil Tropical forest soil 9.1086 -79.8436 5275056255 11534963 2299 92 3939 175 SRX3291951 Unrestricted 0.0 Metagenome 3300033110 *Microbiome Permanent Draft Microbial communities from various environments in Magnetic Island Reef, Townsville, Australia Macroalgae surface microbial communities from Magnetic Island Reef, Townsville, Australia - 36425 AGRF 3300033110 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes b.glasl@aims.gov.au Bettina Glasl No Host-associated Algae Unclassified Brown Algae Unclassified Macroalgae surface -19.1531 146.8641 887212992 2157461 711 72 1146 184 0.0 Metagenome 3300042634 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A29 University of California, Davis 3300042634 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 220296132 627923 313 5 574 9 0.0 Metagenome 3300044249 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 087-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044249 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9277 -106.9773 264730288 737715 384 21 746 22 Unrestricted 7.71 Metagenome 3300024912 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 45_HOW7 (SPAdes) DOE Joint Genome Institute (JGI) 3300024912 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 38914040 61636 28 0 41 0 SRX2720574 Unrestricted 0.0 Metagenome 3300009439 *Microbiome Permanent Draft Genome and metagenome analysis of marine red algae Porphyra Marine algal microbial communities from Maine, USA - Maine_Asex4_metaG DOE Joint Genome Institute (JGI) 3300009439 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes brawley@maine.edu, Brawley@maine.edu Susan Brawley No Host-associated Algae Unclassified Red algae Unclassified Marine 44.342 -68.065 672056595 1236081 2006 36 3199 67 SRX2999531 Unrestricted 0.0 Metagenome 3300026348 *Microbiome Permanent Draft Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 C6 DOE Joint Genome Institute (JGI) 3300026348 Metagenome Analysis spades v. 3.11.1 Yes Yes ccraft@indiana.edu Chris Craft No Environmental Aquatic Wetlands Freshwater Sediment sediment 31.3377 -81.4644 85420792 244507 276 8 532 9 SRX4796669 Unrestricted 6.4 Metagenome 3300028200 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Site 229 with 3.0UM filter - spades J. Craig Venter Institute 3300028200 Metagenome Analysis Spades v. 3.11.1 Released per Simon Roux. Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater -68.4 78.18278 7.81 15468656 32209 16 0 26 0 0.0 Metagenome 3300025620 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025620 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 409362069 718845 240 50 325 95 SRX2999686 Unrestricted 0.0 Metagenome 3300034081 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B4A4.3 DOE Joint Genome Institute (JGI) 3300034081 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 268202397 710363 546 0 937 0 SRX7658950 Unrestricted 6.71 Metagenome 3300035642 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18A_1a_10_8 mgh University of Alberta 3300035642 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 63815040 81123 37 1 51 1 0.0 Metagenome 3300042158 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A6 University of California, Davis 3300042158 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 316882811 869603 380 7 707 10 0.0 Metagenome 3300005169 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgHPA DOE Joint Genome Institute (JGI) 3300005169 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 716953958 2341438 859 18 1622 54 SRX2521133 Unrestricted 0.0 Metagenome 3300004285 *Microbiome Permanent Draft Beaver gut microbial communities from British Columbia, Canada Beaver gut microbial communities from British Columbia, Canada - Beaver Fecal Sample 1 Genome Quebec 3300004285 Metagenome Analysis ABySS released per JGI data release policy No Yes keithmewis@gmail.com Keith Mewis No Host-associated Mammals Large intestine Digestive system Fecal Beaver gut 49.01063 -122.625468 1837920 1497 1 0 1 0 0.0 Metagenome 3300043560 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield ecozone, Canada - Lake 06-254 Genome Quebec 3300043560 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.949934 -55.693434 780186338 1818170 314 87 446 150 0.0 Metagenome 2058419020 *Microbiome Permanent Draft Feline fecal microbial communities from Illinois, USA cat metagenome 10 Research and Testing Laboratory 2058419020 Metagenome Analysis seqman NGEN transcriptome released per JGI data release policy No Yes sdowd@pathogenresearch.org Scot E. Dowd No Host-associated Mammals Large intestine Digestive system Fecal Feline fecal 40.11 -88.4 64478234 190252 171 0 281 0 0.0 Metagenome 3300044852 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - C3-8-23-19 DOE Joint Genome Institute (JGI) 3300044852 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.31 -120.4152 327497210 867968 394 36 672 72 Restricted 7.93 Metagenome 3300026656 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN577 (SPAdes) DOE Joint Genome Institute (JGI) 3300026656 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.070856 -96.582821 6643647 18885 47 0 60 1 SRX3311853 Unrestricted 0.0 Metagenome 3300037598 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR10_LV DOE Joint Genome Institute (JGI) 3300037598 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Crustal Fluids crustal fluids 47.7534 -127.7638 1395073587 2860793 1139 113 1965 228 SRX9096395 Unrestricted 36.08 Metagenome 3300028495 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen5, Rep 1 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028495 Metagenome Analysis spades v. 3.11.1 No Yes xpeng@seoe.sc.edu; momalley@engineering.ucsb.edu Xuefeng (Nick) Peng; Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 19783023 23352 29 0 31 1 SRX5645531 Unrestricted 0.0 Metagenome 3300038942 *Microbiome Permanent Draft Host-associated microbial communities from haemolymph of Banana aphid from Africa Host-associated microbial communities from haemolymph of Banana aphid from Africa - Madagascar Gembloux Agro-bio Tech 3300038942 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Host-associated Arthropoda: Insects Hemolymph Circulatory system Unclassified Host-associated 65173508 90090 6 0 5 0 SRX766492 0.0 Metagenome 3300015160 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G7C, Adjacent to main proglacial river, mid transect (Watson river)) University of Bristol 3300015160 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.082186 -50.322297 149668891 345797 108 18 183 27 0.0 Metagenome 3300011767 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00442 Weill Cornell Medical College 3300011767 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -73.8 35287951 55758 22 0 36 0 SRX822411 0.0 Metagenome 3300038404 *Microbiome Permanent Draft Freshwater aquifer microbial communities from several locations in Germany Freshwater aquifer microbial community in Altingen, Germany - Alt1 CeGaT 3300038404 Metagenome Analysis metaSPAdes v. 3.7 released by JGI data releasing policy No Yes nia.blackwell@uni-tuebingen.de Nia Blackwell No Environmental Aquatic Groundwater Freshwater Unclassified Freshwater aquifer 48.56 8.9 7 3540427266 10778070 1727 96 3824 171 0.0 Metagenome 3300028920 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Marine sediment archaeal communities from Little Sippewissett salt marsh, Falmouth, MA, United States - SSM-Prop-6N DOE Joint Genome Institute (JGI) 3300028920 Metagenome Analysis spades v. 3.11.1 Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 3100428748 6146540 1760 12 2929 14 SRX5356212 Unrestricted 16.17 Metagenome 3300012484 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.old.190510 DOE Joint Genome Institute (JGI) 3300012484 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Environmental Terrestrial Unclassified Soil Unclassified soil 35.9076 -79.0506 89354989 243784 191 8 437 24 SRX3527438 Unrestricted 0.0 Metagenome 3300042393 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME22Apr2016-rr0865 DOE Joint Genome Institute (JGI) 3300042393 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 686387365 1079993 205 70 278 100 Unrestricted 17.58 Metagenome 3300045973 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Microbial mat bacterial communities from freshwater pond, North Slope, Alaska, United States - TFS_Pond3_9July2019 DOE Joint Genome Institute (JGI) 3300045973 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes demerson@bigelow.org David Emerson No Environmental Aquatic Pond Freshwater Unclassified freshwater ferric oxide microbial mat 68.6243 -149.6011 1158107407 1738442 838 429 1165 562 Unrestricted 28.87 Metagenome 3300011789 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01137 Weill Cornell Medical College 3300011789 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.7 -73.92 37763287 59846 24 0 30 0 SRX823092 0.0 Metagenome 3300070277 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Alaska, USA - DEJU_047-O-20180621-COMP-DNA1 3300070277 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 77754515 202860 76 35 161 41 0.0 Metagenome 3300041552 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_129 MetaG AgResearch, New Zealand, Mosgeil 3300041552 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1097935202 2390342 368 49 1058 58 0.0 Metagenome 3300020420 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142) CEA Genoscope 3300020420 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 31.493 -159.0606 986407745 2434329 444 66 877 131 0.0 Metagenome 3300030442 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021275-16 Beijing Genomics Institute (BGI) 3300030442 Metagenome Analysis Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 164004423 217186 129 0 188 0 0.0 Metagenome 3300000436 *Microbiome Permanent Draft Soil microbial communities from four geographically distinct crusts in the Colorado Plateau and Sonoran desert Soil microbial communities from Colorado Plateau, Greene Butte sample - Light Crust, Colorado Plateau, Green Butte DOE Joint Genome Institute (JGI) 3300000436 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS Yes Yes elbrodie@lbl.gov, ELBrodie@lbl.gov Eoin Brodie Yes 25926821 Environmental Terrestrial Sand Soil Desert Soil 38.714972 -109.692944 81013524 128691 50 3 123 6 Unrestricted 0.0 Metagenome 3300005187 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0927_05_20cm DOE Joint Genome Institute (JGI) 3300005187 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 3454526256 9748120 3176 74 5440 131 SRX2519713 Unrestricted 0.0 Metagenome 3300055000 *Microbiome Permanent Draft Soil biocrust microbial and viral communities from model ecosystem in Berkeley Lab, California, USA Soil biocrust microbial communities from model ecosystem in Berkeley Lab, California, USA - 0hr_B DOE Joint Genome Institute (JGI) 3300055000 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sroux@lbl.gov Simon Roux No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil biocrust 37.87739 -122.250939 1485275843 2476619 660 15 968 24 Restricted 31.15 Metagenome 3300001780 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from the Cayman Rise, Cayman Islands Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Vondamm Supr46 3300001780 Metagenome Analysis IDBA_UD k52-k92 step10 released by JGI data releasing policy No Yes Gregory Dick, Sunit Jain No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 18.35 -81.85 179566894 265480 199 7 349 12 0.0 Metagenome 3300031456 *Microbiome Permanent Draft Soil and ectomycorrhiza microbial communities from Populus trichocarpa stands in riparian zones in the Pacific Northwest, United States Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM DOE Joint Genome Institute (JGI) 3300031456 Metagenome Analysis spades v. 3.12.0 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Plants Unclassified Roots Unclassified ectomycorrhiza 45.9233 -120.701 2325142524 3984526 561 97 904 120 SRX5650756 Unrestricted 21.32 Metagenome 3300040546 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 079_R1_022417 University of Maryland 3300040546 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.52702 19.01423 2654212 7461 18 2 15 0 0.0 Metagenome 3300033186 *Microbiome Permanent Draft Cyanobacterial mat microbial communities from Siderastrea siderea from Carrie Bow Caye Field Station, Belize Cyanobacterial mat microbial communities from Siderastrea sidereal surface, the Meso-American Barrier Reef, Belize -- Sid2 University of Maryland 3300033186 Metagenome Analysis IDBA v. 2.3 released by JGI data releasing policy No Yes anyabrown@ufl.edu Anya Brown No Host-associated Invertebrates Unclassified Cnidaria Unclassified cyanobacterial mat from coral surface 16.80288 -88.08213 111663936 125663 57 13 69 15 0.0 Metagenome 3300048905 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 DOE Joint Genome Institute (JGI) 3300048905 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Rhizoplane Roots Unclassified Rhizoplane soil 42.40581 -85.40228 2239023230 3645904 717 68 1111 83 Unrestricted 14.54 Metagenome 3300034197 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02S_18 DOE Joint Genome Institute (JGI) 3300034197 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9142 -147.835 660739267 1684038 583 22 933 32 SRX7633912 Unrestricted 6.69 Metagenome 3300040619 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_001-M-20-7-20140116-GEN-DNA1 Argonne National Laboratory 3300040619 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 1453108 4451 23 2 34 0 ERX2133924 0.0 Metagenome 3300014254 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D2 DOE Joint Genome Institute (JGI) 3300014254 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.052479 -121.7687 252166462 604374 301 1 599 3 SRX7181219 Unrestricted 0.0 Metagenome 3300007293 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila melanogaster male 6 gut Cornell University 3300007293 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy Yes Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila melanogaster male adult gut 42.875296 -77.006403 266184078 305906 3 3 5 9 0.0 Metagenome 3300045605 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_2_B DOE Joint Genome Institute (JGI) 3300045605 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 145800953 165299 86 1 96 1 Unrestricted 145.92 Metagenome 3300026749 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07K1-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026749 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 21600752 73496 81 5 168 6 SRX2576174 Unrestricted 0.0 Metagenome 3300013493 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00426 Weill Cornell Medical College 3300013493 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.93 25479101 38873 12 0 21 0 SRX822395 0.0 Metagenome 3300043384 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 193-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043384 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.8573 -107.0963 496585587 1322167 412 17 774 29 Unrestricted 6.67 Metagenome 3300069634 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_007-M-20160823-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069634 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 51369194 153019 126 15 220 29 0.0 Metagenome 3300013274 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100619 University of Pennsylvania 3300013274 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 26539980 64723 19 0 30 0 SRX756475 0.0 Metagenome 3300002455 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011 McGill University 3300002455 Metagenome Analysis released per JGI data release policy No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 57.02 -111.55 0 0 0 0 0 0 0.0 Metagenome 3300022922 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011508AT metaG (version 2) DOE Joint Genome Institute (JGI) 3300022922 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 894563799 1555564 452 117 779 178 SRX4068625 Unrestricted 32.0 Metagenome 3300059721 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1558A-02 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059721 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2763 -124.0055 171849703 375474 186 8 270 19 SRX2753757 Unrestricted 0.0 Metagenome 3300025924 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025924 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 3431096444 7945382 1447 155 2721 232 SRX3203318 Unrestricted 0.0 Metagenome 3300035400 *Microbiome Permanent Draft Extreme environments viral communities from various locations Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2450 DOE Joint Genome Institute (JGI) 3300035400 Metagenome Analysis spades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified filtered seawater 13.5136 -44.9628 152046928 418065 33 11 42 20 SRX7709943 Unrestricted 124.93 Metagenome 3300008007 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-10 DOE Joint Genome Institute (JGI) 3300008007 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 1003781976 1781731 973 36 1535 43 SRX3198137 Unrestricted 0.0 Metagenome 3300032060 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18 DOE Joint Genome Institute (JGI) 3300032060 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1177441924 2829705 353 4 650 9 SRX5817503 Unrestricted 14.04 Metagenome 3300022202 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_21 DOE Joint Genome Institute (JGI) 3300022202 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Sediment Marine Unclassified sediment 37.79 -122.36 550959571 1338754 561 37 1028 62 SRX4053265 Unrestricted 9.0 Metagenome 3300009585 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Gongxiaoshe hot spring, China to study Microbial Dark Matter (Phase II) - GXS 110809B DOE Joint Genome Institute (JGI) 3300009585 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes rstepanauskas@bigelow.org; brian.hedlund@unlv.edu Ramunas Stepanauskas; Brian Hedlund No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring 25.4401 98.4408 7.29 156747795 308249 200 1 282 0 SRX2753917 Unrestricted 0.0 Metagenome 3300040290 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_006-M-20160725-COMP-DNA1 Battelle Memorial Institute 3300040290 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 6424396 19096 27 7 46 7 0.0 Metagenome 3300025343 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 3 Metagenome Rauer3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025343 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake enrichment -68.8244 77.8344 44259044 55834 16 0 23 0 SRX2747270 Unrestricted 0.0 Metagenome 3300019714 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FRT_2-3_MG DOE Joint Genome Institute (JGI) 3300019714 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 106284110 267518 228 8 437 19 SRX3982711 Unrestricted 3.36 Metagenome 3300049471 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Oak Ridge, Tennessee, USA - eastforkpoplarcreek_2019_sed_WHONDRS-S19S_0039 DOE Joint Genome Institute (JGI) 3300049471 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 35.966194 -84.359197 148072071 380693 596 3 1058 7 Unrestricted 10.79 Metagenome 3300064809 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 678 in Boyle, Alberta, Canada - S00JY_0686 Microbiome Insights 3300064809 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 54.40412255 -112.5854583 149377682 203984 59 0 91 0 0.0 Metagenome 3300025204 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0203 (SPAdes) DOE Joint Genome Institute (JGI) 3300025204 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 7.33 -26.0 105599227 199762 115 1 192 1 SRX1983337 Unrestricted 0.0 Metagenome 3300028624 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Trp DOE Joint Genome Institute (JGI) 3300028624 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 280360849 451645 213 3 256 6 SRX5281889 Unrestricted 28.0 Metagenome 3300011388 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00393 Weill Cornell Medical College 3300011388 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.67 -73.99 12084066 22479 11 0 14 0 SRX822364 0.0 Metagenome 3300005091 *Microbiome Permanent Draft Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich - 42s-102 University of Cincinnati 3300005091 Metagenome Analysis Velvet v. 0.7.57 released per JGI data release policy No Yes rlamendella@lbl.gov Regina Lamendella No Environmental Aquatic Groundwater Freshwater Contaminated Groundwater 40.0 -74.5 0 0 0 0 0 0 0.0 Metagenome 7000000006 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 737052003 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000006 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 89716939 145800 0 0 0 0 0.0 Metagenome 3300041712 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_60 MetaG AgResearch, New Zealand, Mosgeil 3300041712 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1602238140 3474860 312 43 1138 52 0.0 Metagenome 3300020121 *Microbiome Permanent Draft Soil bacterial communities from Switchgrass agricultural field in Lux Arbor, Michigan, USA Soil bacterial communities from Switchgrass agricultural field in Lux Arbor, Michigan, USA - site F3, fertilized Michigan State University 3300020121 Metagenome Analysis Megahit released by JGI data releasing policy Yes Yes aarongaroutte@gmail.com Aaron J. Garoutte No Environmental Terrestrial Unclassified Soil Agricultural land Soil 42.4891 -85.4641 4892742159 8535536 1294 46 2074 94 0.0 Metagenome 3300003751 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 DOE Joint Genome Institute (JGI) 3300003751 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 59496685 77771 51 0 60 0 SRX2770679 Unrestricted 0.0 Metagenome 3300036559 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C1-7B DOE Joint Genome Institute (JGI) 3300036559 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 214143442 640438 357 12 625 21 SRX8816773 Unrestricted 5.23 Metagenome 3300034062 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045 DOE Joint Genome Institute (JGI) 3300034062 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1612511863 3202746 633 113 988 149 SRX7621643 Unrestricted 15.27 Metagenome 3300003324 *Microbiome Permanent Draft Sugarcane root and bulk soil microbial communities from Ayr, Burdekin, Queensland Australia Sugarcane bulk soil Sample H2 3300003324 Metagenome Analysis CLC genomics workbench 7 released by JGI data releasing policy No Yes yun.yeoh@uqconnect.edu.au Yun Kit Yeoh No Environmental Terrestrial Unclassified Soil Agricultural land Sugarcane root and bulk soil -19.733298 147.17873 861915016 1238239 52 21 83 26 0.0 Metagenome 3300036365 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C3-7B DOE Joint Genome Institute (JGI) 3300036365 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 43565280 141671 105 3 211 10 SRX8817710 Unrestricted 4.11 Metagenome 3300026725 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A5-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026725 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 19046728 62826 89 3 139 7 SRX1991274 Unrestricted 0.0 Metagenome 3300028912 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 507_B Beijing Genomics Institute (BGI) 3300028912 Metagenome Analysis released Yes Yes mhuntemann@lbl.gov gbp Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 17498648 18202 15 0 9 0 ERX491157 0.0 Metagenome 3300017760 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 31 SPOT_SRF_2012-02-16 DOE Joint Genome Institute (JGI) 3300017760 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 337828811 825725 57 21 104 34 SRX7207411, SRX7207410 Unrestricted 0.0 Metagenome 3300011926 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00246 Weill Cornell Medical College 3300011926 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.77 -73.98 86289322 135200 31 0 52 0 SRX822225 0.0 Metagenome 3300034404 *Microbiome Permanent Draft Evening Primrose Hot Spring Microbial Community Hot spring sediment microbial community from Evening Primrose, Yellowstone National Park, WY, USA - EP_sed University of Wisconsin, Madison 3300034404 Metagenome Analysis Spades v. 3.10 released by Daniel Colman No Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring sediment 44.69934 -110.76721 54498924 85175 50 2 48 4 0.0 Metagenome 3300024920 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 129_HOW14 (SPAdes) DOE Joint Genome Institute (JGI) 3300024920 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 57269520 81930 29 0 36 0 SRX2722019 Unrestricted 0.0 Metagenome 3300024495 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_8d DOE Joint Genome Institute (JGI) 3300024495 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 149787287 343953 156 22 229 28 SRX4547332 Unrestricted 12.28 Metagenome 3300034942 *Microbiome Permanent Draft Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China - SA2 Sun Yat-Sen University 3300034942 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy No Yes yuxiaoli92@163.com Xiaoli Yu No Environmental Aquatic Intertidal zone Marine Mangrove sediment mangrove sediment 23.45 116.43 218241272 597729 97 16 336 28 0.0 Metagenome 3300004771 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA2.5M DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300004771 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu, tmcmahon@engr.wisc.edu; shaomei.he@gmail.com Katherine McMahon, Katherine McMahon; Shaomei He No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 428770858 1061492 474 133 810 220 SRX2518388 Unrestricted 0.0 Metagenome 3300036318 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Shale gas microbial communities from Fort St. John, British Columbia, Canada - UGR 52.1 DOE Joint Genome Institute (JGI) 3300036318 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back shale gas 56.0 -122.0 38071287 56905 46 0 60 0 SRX8356291 Unrestricted 364.71 Metagenome 3300070524 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Arizona, USA - SRER_002-M-20170815-COMP-DNA1 Battelle Memorial Institute 3300070524 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.870334 -110.856598 6.45-7.54 3352874 10876 36 0 76 2 0.0 Metagenome 3300025612 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_20_10 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025612 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 311019600 676313 160 35 311 50 SRX3005975 Unrestricted 0.0 Metagenome 3300011206 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00111 Weill Cornell Medical College 3300011206 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.75 -73.84 33729990 47161 20 0 29 0 SRX822098 0.0 Metagenome 3300048852 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD6 DOE Joint Genome Institute (JGI) 3300048852 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.347657 -119.2808 469736938 657218 77 53 111 65 Unrestricted 74.19 Metagenome 3300007769 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_D1_MG DOE Joint Genome Institute (JGI) 3300007769 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Terrestrial Wetlands Soil Unclassified Soil 37.4965 -122.1329 456622735 914465 365 6 661 9 SRX2523772 Unrestricted 0.0 Metagenome 3300003943 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE06Aug07 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003943 Metagenome Analysis recovered by Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 49658617 177465 67 50 111 167 SRX2565197 Unrestricted 0.0 Metagenome 3300049525 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F21_B_7_control DOE Joint Genome Institute (JGI) 3300049525 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 68104486 165499 159 12 378 21 Unrestricted 33.19 Metagenome 3300005259 *Microbiome Permanent Draft Freshwater pond sediment microbial communities from Middleton WI, enriched by Humic Acid and/or Glucose under anaerobic conditions Freshwater pond sediment microbial communities from Middleton WI, enriched with Humic Acid and Glucose under anaerobic conditions - HA Sample 1 University of Wisconsin, Madison 3300005259 Metagenome Analysis CLC Genomic Workbench released per JGI data release policy Yes Yes nstern2@wisc.edu Noah Stern No Environmental Aquatic Sediment Freshwater Unclassified Anaerobic Enrichment Culture 43.0603 -89.5717 306829144 586464 236 2 393 1 0.0 Metagenome 3300042268 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA MBR feed microbial communities from membrane bioreactor in Denver, Colorado, USA - FD_D118 DOE Joint Genome Institute (JGI) 3300042268 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Wastewater Mine water Industrial wastewater Produced water MBR feed 39.7823 -104.9101 634456810 984674 494 4 677 13 Unrestricted 17.75 Metagenome 3300043653 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 368-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043653 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9915 -107.0646 508757465 1366830 479 43 957 66 Unrestricted 7.34 Metagenome 3300030098 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_124 - TARA_R100000700 CEA Genoscope 3300030098 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -9.0714 -140.5973 212536672 422394 13 0 15 0 0.0 Metagenome 3300020412 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001167 (ERX556053-ERR599047) CEA Genoscope 3300020412 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 34.6054 -71.2317 888702548 2370887 538 54 1218 120 0.0 Metagenome 3300007787 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159611913 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007787 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 53377603 97976 48 0 94 0 0.0 Metagenome 3300005842 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 DOE Joint Genome Institute (JGI) 3300005842 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 5876293600 16514443 3811 409 6423 779 SRX2784983 Unrestricted 0.0 Metagenome 3300001341 *Microbiome Permanent Draft Marine cyanobacterial communities from Panama, similar to Oscillatoria species Marine cyanobacterial communities from Panama - species 1 Leptolyngbya sp. v3 (version 4) DOE Joint Genome Institute (JGI) 3300001341 Metagenome Analysis released based on JGI ITS Yes Yes lgerwick@ucsd.edu Lena Gerwick No Environmental Aquatic Unclassified Marine Unclassified Marine 9.28 -79.97 414503233 615925 229 12 331 27 SRX8048359, SRX8048358 Unrestricted 0.0 Metagenome 3300015250 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT293B_16_10D DOE Joint Genome Institute (JGI) 3300015250 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9228 -106.9508 168169322 409615 405 4 852 11 SRX3780472 Unrestricted 4.45 Metagenome 3300056693 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.5W.14 SIP fraction DOE Joint Genome Institute (JGI) 3300056693 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 117940161 211224 111 12 201 21 Unrestricted 13.34 Metagenome 3300026239 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from above oceans and continental USA - SEAC4RS-RF8-008 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026239 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 10107530 31707 37 5 62 19 Unrestricted 0.0 Metagenome 3300044673 *Microbiome Permanent Draft Rhizosphere and rhizoplane microbial communities from rice plants in Newark, Delaware, United States Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED DOE Joint Genome Institute (JGI) 3300044673 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes angelias@udel.edu Angelia Seyfferth No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 39.6 -75.8 1315620567 2136200 801 15 1313 27 Unrestricted 33.6 Metagenome 3300031794 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23 DOE Joint Genome Institute (JGI) 3300031794 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 618655171 1529094 237 2 349 4 SRX5817460 Unrestricted 11.85 Metagenome 3300002844 *Microbiome Permanent Draft Stormwater retention pond microbial communities from Williamsburg, VA Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Jamestown High School 3300002844 Metagenome Analysis Newbler released per JGI data releasing policy No Yes kewilliamson@wm.edu Kurt Williamson No Environmental Aquatic Pond Freshwater Unclassified Stormwater retention pond 37.251274 -76.791915 914248 1784 0 0 0 0 0.0 Metagenome 3300042215 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D140_1 DOE Joint Genome Institute (JGI) 3300042215 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 139618211 202225 92 10 133 17 Unrestricted 65.74 Metagenome 3300012001 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A24_80cm_12M University of Tennessee 3300012001 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 279007874 641726 105 12 223 20 SRX710621 0.0 Metagenome 3300021093 *Microbiome Permanent Draft Freshwater microbial communities from Lake Tanganyika, Tanzania Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015023 Mahale A surface DOE Joint Genome Institute (JGI) 3300021093 Metagenome Analysis spades v. 3.10.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater lake -5.5789 29.514 1271910532 2195059 418 72 598 103 SRX4819943 Unrestricted 55.53 Metagenome 3300003511 *Microbiome Permanent Draft Marine hydrothermal diffuse flow vent microbial communities from the Mid-Cayman Rise, Caribbean Sea Marine hydrothermal diffuse flow vent microbial communities from the Mid-Cayman Rise, Caribbean Sea - Sample FS856 Marine Biological Laboratory 3300003511 Metagenome Analysis released per JGI data release policy No Yes Huber, J.A., and Julie Reveillaud No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Marine hydrothermal diffuse flow vent 18.546577 -81.717684 6.66 63897472 70982 4 0 7 0 0.0 Metagenome 3300036719 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME29Aug2014-rr0070 DOE Joint Genome Institute (JGI) 3300036719 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1759992334 2691629 567 114 805 144 SRX8202166 Unrestricted 17.2 Metagenome 3300052933 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Colorado, USA - CP_H2_S1 DOE Joint Genome Institute (JGI) 3300052933 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 39.93835 -105.96112 144530132 273827 298 37 608 71 Unrestricted 21.13 Metagenome 3300007368 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 158499257 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007368 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 187989243 270502 187 0 244 0 0.0 Metagenome 3300049170 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S17_C_D89 hydrophilic DOE Joint Genome Institute (JGI) 3300049170 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 347434527 505686 195 2 283 2 Unrestricted 49.25 Metagenome 3300007315 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159247771 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007315 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 120670921 159165 76 0 90 0 0.0 Metagenome 3300027483 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A1-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300027483 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 43970252 140941 125 5 194 9 SRX2576249 Unrestricted 0.0 Metagenome 3300070311 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_042-M-20180926-COMP-DNA1 3300070311 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 275264 956 16 3 26 2 0.0 Metagenome 3300035101 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0817M12 DOE Joint Genome Institute (JGI) 3300035101 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0387 728330216 1722317 674 7 1149 4 SRX8270845 Unrestricted 5.83 Metagenome 3300069463 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_004-M-20140708-COMP-DNA1 re-annotation Argonne National Laboratory 3300069463 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 18003072 51909 56 8 100 17 ERX2134023 0.0 Metagenome 3300046700 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-C1 20-24 DOE Joint Genome Institute (JGI) 3300046700 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0435 349445356 550449 193 3 281 9 Restricted 12.23 Metagenome 3300044225 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T8 S DOE Joint Genome Institute (JGI) 3300044225 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7096 -64.129 340794671 795355 17 3 25 4 Unrestricted 42.84 Metagenome 3300004007 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_CordC_D2 DOE Joint Genome Institute (JGI) 3300004007 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 37.928627 -122.504829 921212865 2622899 828 15 1731 21 SRX7142925 Unrestricted 0.0 Metagenome 3300014164 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin11_30_metaG DOE Joint Genome Institute (JGI) 3300014164 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1346684327 2533316 597 4 934 9 SRX3293580 Unrestricted 8.2 Metagenome 3300042850 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203 NMDC pilot DOE Joint Genome Institute (JGI) 3300042850 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92044255 -106.94881797 768147167 1857027 476 8 844 19 SRX5355397 0.0 Metagenome 3300044739 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_15BD DOE Joint Genome Institute (JGI) 3300044739 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4337 -106.2481 1167214863 1967322 409 29 682 28 SRX20649971 Unrestricted 17.46 Metagenome 3300035313 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from diseased Eunicella gazella from Algarve, Portugal - EG15N Euk Molecular Research LP (MR DNA) 3300035313 Metagenome Analysis Metawrap workflow v. 1.0.5 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 1478595 1151 3 2 2 3 0.0 Metagenome 3300050498 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Bulk soil microbial communities from a Populus tree surrounding site in Tennessee, USA - Soil MetaG P. deltoides SBSDD2 re-annotation DOE Joint Genome Institute (JGI) 3300050498 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Environmental Terrestrial Tree plantation Soil Unclassified Bulk soil 35.8443 -83.9607 3332048840 7111497 1528 74 3004 133 SRX2840489 0.0 Metagenome 3300022910 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L016-104C-6 DOE Joint Genome Institute (JGI) 3300022910 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 532527760 1126639 501 111 835 158 SRX4799650 Unrestricted 7.87 Metagenome 3300029500 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005360-15 Beijing Genomics Institute (BGI) 3300029500 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 61581981 84412 74 0 120 0 0.0 Metagenome 3300006459 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159369152 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006459 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 106442564 153720 80 0 124 0 0.0 Metagenome 3300007042 *Microbiome Permanent Draft Cephalotes ants gut microbiomes Ant gut microbial communities from Cephalotes pusillus, Brazil Harvard University 3300007042 Metagenome Analysis IDBA-UD released by Yi Hu Yes Yes pl356@drexel.edu, yihu.bnu@gmail.com Piotr Lukasik, Yi Hu No Host-associated Arthropoda: Insects Gut Digestive system Unclassified ant gut -19.11 -48.24 61721096 130023 34 1 49 1 0.0 Metagenome 3300027288 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgHMC (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027288 Metagenome Analysis spades v. 3.11.1 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Agricultural land Soil Unclassified Soil 45.54 -73.72 152701258 446975 247 15 467 21 SRX2739586 Unrestricted 0.0 Metagenome 3300026197 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_A_D1_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026197 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4958 -122.1331 467270350 923903 436 3 712 7 SRX2753769 Unrestricted 0.0 Metagenome 3300070236 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_031-O-20210104-COMP-DNA1 3300070236 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 88593 313 4 0 1 0 0.0 Metagenome 3300013363 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01155 Weill Cornell Medical College 3300013363 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.91 20490263 35768 23 0 26 0 SRX823110 0.0 Metagenome 3300048075 *Microbiome Permanent Draft Marine and freshwater sediment microbial communities from various locations Freshwater sediment microbial communities from creek in Powell, Michigan, United States - Mountain_Stream_HM 2 DOE Joint Genome Institute (JGI) 3300048075 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes smtechtm@mtu.edu Stephen Techtmann No Environmental Aquatic Sediment Freshwater Unclassified Freshwater sediment 46.8697 -87.8943 205664135 644282 474 28 775 62 Unrestricted 5.37 Metagenome 3300002113 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A1-10 DOE Joint Genome Institute (JGI) 3300002113 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 469351 1666 34 0 62 0 SRX1990506 Unrestricted 0.0 Metagenome 3300028719 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182 DOE Joint Genome Institute (JGI) 3300028719 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92029772 -106.94875926 650131776 1634730 340 8 634 17 SRX5354717 Unrestricted 12.37 Metagenome 3300069268 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Yellowstone NP, Wyoming, USA - YELL_046-M-20210705-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069268 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 44.952363 -110.541582 1874275737 4830121 1500 100 2853 167 0.0 Metagenome 3300013024 *Microbiome Permanent Draft Gypsum rock endolithic and hypoendolithic microbial communities Gypsum crust hypoendolithic microbial communities from the Atacama Desert, Chile - KM37, HE Johns Hopkins Bayview Research CORES 3300013024 Metagenome Analysis metaSPAdes released by JGI data releasing policy Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock -20.43644 -69.58397 330424690 860424 150 5 291 17 0.0 Metagenome 3300000477 *Microbiome Draft Alkaline sediment microbial communities from Soda lakes and Soda Solonchak soils Alkaline sediment microbial communities from Lake Bitter, Kulunda Steppe, Russia - 5KL_010_SED DOE Joint Genome Institute (JGI) 3300000477 Metagenome Analysis released based on JGI ITS Yes Yes g.muijzer@uva.nl Gerard Muyzer No Environmental Aquatic Alkaline Non-marine Saline and Alkaline Sediment Alkaline sediment 51.4 79.54 312269109 692367 349 16 635 18 Unrestricted 0.0 Metagenome 3300007962 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1556B-02 DOE Joint Genome Institute (JGI) 3300007962 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2022 -123.941 290818677 557773 354 30 512 56 SRX2753740 Unrestricted 0.0 Metagenome 3300025439 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_10_100 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025439 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 191999222 357950 121 2 184 3 SRX3003285 Unrestricted 0.0 Metagenome 3300033818 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-M DOE Joint Genome Institute (JGI) 3300033818 Metagenome Analysis spades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0475 369343540 701161 152 5 222 8 SRX8137403, SRX8137402 Unrestricted 0.0 Metagenome 3300009620 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51 DOE Joint Genome Institute (JGI) 3300009620 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 39.47 11.53 286385729 594941 128 0 180 1 SRX2753839 Unrestricted 0.0 Metagenome 3300022896 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L184-509B-5 DOE Joint Genome Institute (JGI) 3300022896 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 263184489 529494 268 65 514 103 SRX4801190 Unrestricted 8.05 Metagenome 3300071083 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Soaproot Saddle, California, USA - SOAP_001-M-20180529-COMP-DNA1 3300071083 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 7660074 24640 76 16 120 30 0.0 Metagenome 3300046008 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater viral communities from Lake Mendota, Wisconsin, United States - ME_2020-10-08_23.5m_Virus_AB DOE Joint Genome Institute (JGI) 3300046008 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 425546052 826598 148 2 255 10 Unrestricted 82.96 Metagenome 3300069215 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from National Grasslands LBJ, Texas, USA - CLBJ_006-M-20210506-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069215 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Grasslands Soil Unclassified Terrestrial soil 33.39823 -97.56673 3630159317 8549366 2042 73 3961 101 0.0 Metagenome 3300029169 *Microbiome Permanent Draft Aquariaum water viral communities from Chicago, USA Aquariaum water viral communities from Chicago, USA - Oceanarium - OC1 Michigan State University 3300029169 Metagenome Analysis released Yes Yes No Environmental Aquatic Unclassified Aquaculture Unclassified Aquarium water 41.87 -87.61 19704331 44993 122 2 317 5 0.0 Metagenome 3300012246 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01097 Weill Cornell Medical College 3300012246 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.63 -73.94 27688709 42625 15 2 25 3 SRX823052 0.0 Metagenome 3300020166 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1 DOE Joint Genome Institute (JGI) 3300020166 Metagenome Analysis spades v. 3.10.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling No Environmental Aquatic Epipelagic Marine Unclassified seawater 54.1841 7.9 758846789 1410814 407 100 557 184 SRX3989334 Unrestricted 45.2 Metagenome 3300041028 *Microbiome Permanent Draft Hydraulic fracturing wastewater impacted soil microbiome project Amended soil microbial communities from Fox Creek, Alberta, Canada - FC5027 University of British Columbia 3300041028 Metagenome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy Yes Yes alessi@ualberta.ca Daniel S. Alessi No Environmental Terrestrial Unclassified Soil Unclassified Soil 54.401 -116.8043 22257146 28536 36 2 50 2 0.0 Metagenome 3300050293 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_54 DOE Joint Genome Institute (JGI) 3300050293 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -75.662 158.876 220104163 330673 22 10 34 9 SRX18235976 Restricted 44.35 Metagenome 3300056827 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Activated sludge microbial communities from bioreactor in WWTP, Madison, WI, USA - RS_2020-07-02_SampleA DOE Joint Genome Institute (JGI) 3300056827 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.03331 -89.35633 1079425662 1089822 363 37 363 36 Unrestricted 13.03 Metagenome 3300064755 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 586 in LaCrete, Alberta, Canada - S00JY_0427 Microbiome Insights 3300064755 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 58.01130917 -116.1709417 124242880 186609 51 0 93 0 0.0 Metagenome 3300011961 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00199 Weill Cornell Medical College 3300011961 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.59 -73.98 53607326 83422 30 0 51 0 SRX822178 0.0 Metagenome 3300050474 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - E11NW0 DOE Joint Genome Institute (JGI) 3300050474 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 129328496 247592 202 40 348 58 Unrestricted 18.48 Metagenome 3300029187 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002600-16 Beijing Genomics Institute (BGI) 3300029187 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 83118427 101895 76 0 104 0 0.0 Metagenome 3300008977 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T18 (2) (BES), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2) Shell Corporation 3300008977 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 130203829 459091 183 0 327 4 0.0 Metagenome 3300012590 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100258 University of Pennsylvania 3300012590 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17782882 36417 15 1 11 0 SRX756643 0.0 Metagenome 3300039812 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA Corn field soil microbial communities from Boone County, Iowa, USA - CC21-Micro-July2012 Iowa State University 3300039812 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land Corn field soil 42.01375 -93.783837 30127989 90599 123 8 241 13 0.0 Metagenome 3300022745 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 1-17_Aug_MG DOE Joint Genome Institute (JGI) 3300022745 Metagenome Analysis spades v. 3.11.1-check Yes Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 350912595 758307 524 28 810 44 SRX4478318 Unrestricted 13.03 Metagenome 3300040351 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_046-M-20170621-COMP-DNA1 Battelle Memorial Institute 3300040351 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 4341672 13277 32 10 75 16 0.0 Metagenome 3300040724 *Microbiome Finished Hotspring water microbial communities from Chignahuapan, Puebla, Mexico Hot spring water microbial communities from Chignahuapan, Puebla, Mexico - S3 Instituto de Biotecnologia, UNAM 3300040724 Metagenome Analysis MEGAHIT v. 1.2.9 released by JGI data releasing policy No Yes hugo.castelansnc@uaem.edu.mx Hugo Gildardo Castelan Sanchez No Environmental Aquatic Hot (42-90C) Thermal springs Neutral hot spring water 19.8214 -98.1178 7.02 11821062 29536 8 0 27 0 0.0 Metagenome 3300002301 *Microbiome Permanent Draft Lentic enriched actinobacterial communities from dystrophic bog Grosse Fuchskuhle, Brandenburg, Germany Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI co-culture FSW-F8 DOE Joint Genome Institute (JGI) 3300002301 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes sarilog@gmail.com Sarahi Garcia Yes 29848762 Environmental Aquatic Lentic Freshwater Unclassified Lentic 53.1666 13.0333 87127170 154455 29 6 38 15 SRX3329581 Unrestricted 0.0 Metagenome 3300005677 *Microbiome Permanent Draft Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia Enhanced biological phosphorus removal bioreactor viral communities from the University of Queensland, Australia - SBR4-V91210 Phage Sequencing University of Queensland 3300005677 Metagenome Analysis CLC 6.0 Released per Connor Skennerton (Sep 15, 2015) No Yes c.skennerton@gmail.com Connor Skennerton No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor lab-scale EBPR bioreactor -27.49999 153.012098 19861436 42146 11 3 16 6 0.0 Metagenome 7000000731 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763536994 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000731 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 124671135 213817 0 0 0 0 0.0 Metagenome 3300031379 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-220 DOE Joint Genome Institute (JGI) 3300031379 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.759 -70.891 448150348 932426 316 4 539 9 SRX5358434 Unrestricted 15.21 Metagenome 3300026081 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_SurfaceA_ad_6m_LV_A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026081 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 376776070 913646 305 8 497 8 SRX2775744 Unrestricted 0.0 Metagenome 3300028559 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_1m DOE Joint Genome Institute (JGI) 3300028559 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater 39.9879 -1.8737 835795255 1339069 376 49 548 88 SRX5248699 Unrestricted 30.36 Metagenome 3300033411 *Microbiome Permanent Draft Meromitic Lake A Freshwater microbial communities from meromitic lake A, Ellesmere Island, Canada - Sample 6m re-analysis2 Laval University 3300033411 Metagenome Analysis Megahit v. 1.0.5 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 82.99445 -75.443367 756092703 1460699 395 20 549 41 0.0 Metagenome 3300036912 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 E2 20-24 DOE Joint Genome Institute (JGI) 3300036912 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0468 582583203 1135354 321 5 592 6 SRX8138858 Unrestricted 9.56 Metagenome 3300039128 *Microbiome Permanent Draft Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA - kan8 University of Minnesota 3300039128 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic River Freshwater Unclassified Freshwater 44.917867 -93.128967 4479369 4652 5 0 3 0 0.0 Metagenome 3300028365 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #83 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028365 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 72253141 127863 46 2 67 4 SRX3241669 Unrestricted 0.0 Metagenome 3300038725 *Microbiome Permanent Draft Seagrass microbial communities from Seahorse Key, Florida, USA Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 University of Florida 3300038725 Metagenome Analysis Megahit v. 1.1.4 released by JGI data releasing policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Plants Unclassified Roots Unclassified seagrass root 29.14 -83.685 111783089 133063 18 3 29 5 0.0 Metagenome 3300006337 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT237_3_0025m University of Hawaii 3300006337 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 624315509 1439713 727 45 1052 78 0.0 Metagenome 3300017948 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10 DOE Joint Genome Institute (JGI) 3300017948 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 1443896493 2910194 812 56 1385 125 SRX3959976 Unrestricted 5.94 Metagenome 3300034656 *Microbiome Permanent Draft Extreme environments viral communities from various locations Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 502_2477 DOE Joint Genome Institute (JGI) 3300034656 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified filtered seawater 13.3325 -44.9106 142959904 364979 33 2 29 1 SRX7583398 Unrestricted 55.66 Metagenome 2124908036 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5 v1 DOE Joint Genome Institute (JGI) 2124908036 Metagenome Analysis Velvet released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 18713403 29747 21 1 42 0 Unrestricted 0.0 Metagenome 3300060592 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210603_07_17 DOE Joint Genome Institute (JGI) 3300060592 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 642864419 951053 257 127 346 172 Unrestricted 26.14 Metagenome 3300025357 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025357 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 80897915 182481 53 12 75 26 SRX2565366 Unrestricted 0.0 Metagenome 3300047201 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2014 IH-D_35cm DOE Joint Genome Institute (JGI) 3300047201 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.213 19.0246 170239873 283020 107 0 184 0 Restricted 64.94 Metagenome 3300004123 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SD (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300004123 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 563710281 1550415 397 108 703 274 Unrestricted 0.0 Metagenome 3300045795 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - P2-R1-B DOE Joint Genome Institute (JGI) 3300045795 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.357 19.047 547679791 1079331 245 12 402 16 Unrestricted 7.99 Metagenome 3300025585 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025585 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 269474608 610946 152 3 227 8 SRX2855083 Unrestricted 0.0 Metagenome 3300031212 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #494 DOE Joint Genome Institute (JGI) 3300031212 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 356270020 682425 133 26 159 39 SRX5649484 Unrestricted 36.47 Metagenome 3300009343 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159753524 replicate 2 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300009343 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes NMikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 88195902 130573 74 0 114 0 0.0 Metagenome 3300037227 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 C-1-D DOE Joint Genome Institute (JGI) 3300037227 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3544 19.048 755003799 1525777 492 11 840 20 SRX8161376 Unrestricted 8.98 Metagenome 3300031778 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24 DOE Joint Genome Institute (JGI) 3300031778 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1051786211 2467303 238 0 383 3 SRX5817229 Unrestricted 12.26 Metagenome 3300033122 *Microbiome Permanent Draft Marine microbial communities from various coral reefs in Barbados Marine microbial communities from coral reef near Hangman's Bay, Barbados - C1 Genome Quebec 3300033122 Metagenome Analysis metaSPAdes v. 1.11.1 released by JGI data releasing policy Yes Yes hallett.bioinformatics@gmail.com Michael Hallett No Environmental Aquatic Intertidal zone Marine Coral reef Marine 13.283523 -59.653114 1500801797 4728185 376 130 650 290 SRX9689227 0.0 Metagenome 3300045003 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - COC4S DOE Joint Genome Institute (JGI) 3300045003 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 1823809156 2961416 594 21 1041 38 Unrestricted 14.3 Metagenome 3300044932 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_6_A DOE Joint Genome Institute (JGI) 3300044932 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 191330846 228847 101 1 127 1 Unrestricted 67.89 Metagenome 3300029091 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 130_12M Beijing Genomics Institute (BGI) 3300029091 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 80331938 94017 58 0 93 0 ERX490944 0.0 Metagenome 3300014307 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLA_D1 DOE Joint Genome Institute (JGI) 3300014307 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.197102 -122.010033 317503538 729953 334 4 651 7 SRX7180771 Unrestricted 0.0 Metagenome 3300042463 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jul2006D10-rr0041 DOE Joint Genome Institute (JGI) 3300042463 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 631554592 973073 232 31 309 44 Unrestricted 19.47 Metagenome 3300030074 *Microbiome Permanent Draft Ice-cream associated microbial communities from Maryland, United States Ice-cream associated microbial communities from Maryland, United States - 44 _R2 U.S. Food and Drug Administration 3300030074 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Ice-cream associated 38.98 -76.93 6724693 7061 6 0 2 0 0.0 Metagenome 3300011133 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01367 Weill Cornell Medical College 3300011133 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.66 -73.99 22795420 32880 13 0 14 0 SRX823307 0.0 Metagenome 3300009924 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S7 University of New South Wales 3300009924 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 63181035 109241 13 9 10 17 0.0 Metagenome 3300071048 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_027-M-20180710-COMP-DNA1 3300071048 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 90245633 267583 126 20 261 25 0.0 Metagenome 3300008117 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA University of Michigan 3300008117 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7026 -83.2538 8.738 941996917 1540358 536 195 782 314 0.0 Metagenome 3300011439 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2 DOE Joint Genome Institute (JGI) 3300011439 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8897 -106.9076 515622708 1121771 385 27 745 61 SRX3539215 Unrestricted 0.0 Metagenome 3300003874 *Microbiome Permanent Draft Isolated Sinkhole microbial communities from Lake Huron, MI Isolated Sinkhole microbial communities from Lake Huron, MI - Assembly 2014 University of Michigan 3300003874 Metagenome Analysis IDBA_UDv1.1.1 released per PI's request No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lotic Freshwater Unclassified Sediment and microbial mat 45.2166667 -83.15 84473367 143533 73 6 109 11 0.0 Metagenome 3300049896 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA15 DOE Joint Genome Institute (JGI) 3300049896 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 332401359 822218 338 4 585 4 Restricted 7.32 Metagenome 3300042636 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Glyptotermes sp. from Thung Chang, Thailand - Gsp477 Eurofins MWG Operon 3300042636 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 19.399181 101.000213 1422756866 1514429 292 34 366 72 0.0 Metagenome 3300005158 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgHAA DOE Joint Genome Institute (JGI) 3300005158 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 160597745 566179 361 10 682 21 SRX2521239 Unrestricted 0.0 Metagenome 3300042169 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Leptogorgia sarmentosa from Algarve, Portugal - LS07H v2 Molecular Research LP (MR DNA) 3300042169 Metagenome Analysis Metawrap workflow v. 1.0.8 released by JGI data releasing policy Yes Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 58946905 65683 3 1 7 4 0.0 Metagenome 3300026545 *Microbiome Permanent Draft Army ant gut microbial communities Army ant gut microbial communities from Eciton burchelli, Santa Rosa, Costa Rica - colony SREbp1 University of California, Berkeley 3300026545 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy Yes Yes jar337@drexel.edu Jacob Russell No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Army ant gut 10.85 -85.62 207318456 221290 12 97 11 996 0.0 Metagenome 3300018412 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater microbial communities from Pennsylvania, USA, analyzing microbe dynamics in response to fracking - TARM_MetaG_T3A_14 (version 2) DOE Joint Genome Institute (JGI) 3300018412 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic River Freshwater Unclassified watersheds 41.2451 -76.9856 661153517 1369643 1637 16 2991 23 SRX4807264 Unrestricted 29.36 Metagenome 3300037395 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037395 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 963797739 1984658 390 27 663 45 SRX4415366, SRX8128072 Unrestricted 0.0 Metagenome 3300027304 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1560A-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027304 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2638 -123.4649 213528623 451709 168 14 240 34 SRX2753754 Unrestricted 17.33 Metagenome 3300021426 *Microbiome Draft Cattle and sheep rumen microbial communities from New Zealand, for comparative studies Sheep rumen microbial communities from New Zealand - Tag 1435 SPADES assembly DOE Joint Genome Institute (JGI) 3300021426 Metagenome Analysis SPADES 3.11.0 released per Natalia and Tijana Yes Yes NNIvanova@lbl.gov; cfan@lbl.gov Natalia Ivanova; Hei Fan No Host-associated Mammals Stomach Digestive system Rumen Cattle and sheep rumen -42.26 171.6 2207411306 3919900 1480 23 2570 36 0.0 Metagenome 7000000116 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 158944319 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000116 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 252877 571 0 0 0 0 SRX023609, SRX023610 0.0 Metagenome 3300070744 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_043-M-20170731-COMP-DNA1 3300070744 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 11279867 34002 45 6 78 12 0.0 Metagenome 3300000786 *Microbiome Draft Wetland microbial communities from Twitchell Island in the Sacramento Delta Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A2 Cattail v1 DOE Joint Genome Institute (JGI) 3300000786 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes stringe@lbl.gov, sgtringe@lbl.gov Susannah Tringe Yes 25991679 Environmental Aquatic Wetlands Marine Sediment Wetland 38.107057 -121.647578 84472288 260286 292 12 556 34 Unrestricted 0.0 Metagenome 3300001430 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 DOE Joint Genome Institute (JGI) 3300001430 Metagenome Analysis Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 11154685 31377 77 1 178 1 SRX1989934 Unrestricted 0.0 Metagenome 3300026138 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026138 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Pond water 37.4971 -122.129 235332468 553250 272 32 426 40 SRX2523773 Unrestricted 0.0 Metagenome 3300060412 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210529_02_17 DOE Joint Genome Institute (JGI) 3300060412 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 1028129706 1489808 261 188 327 292 Unrestricted 25.03 Metagenome 3300027243 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1556A-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027243 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2022 -123.941 99854165 233506 183 92 338 132 SRX2753741 Unrestricted 0.0 Metagenome 3300009767 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS3_MetaG DOE Joint Genome Institute (JGI) 3300009767 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 43.77 142.37 834586994 1506220 816 10 1297 12 SRX2157915 Unrestricted 0.0 Metagenome 3300049745 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB4 DOE Joint Genome Institute (JGI) 3300049745 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 315840392 820443 535 14 1085 19 Unrestricted 8.83 Metagenome 3300064920 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 728 in Hairy hill, Alberta, Canada - S00JY_0755 Microbiome Insights 3300064920 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.4621528 -112.0407692 24108274 34724 20 0 33 0 0.0 Metagenome 3300051385 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - ATCcR1D-21 DOE Joint Genome Institute (JGI) 3300051385 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 210653601 386665 227 24 327 33 Unrestricted 61.43 Metagenome 3300038654 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Lake Farrell, Antarctica - #20 Australian Centre for Ecogenomics 3300038654 Metagenome Analysis Spades v. 3.12.0 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.529217 78.317483 395898456 672673 138 31 218 38 0.0 Metagenome 3300009789 *Microbiome Permanent Draft Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28 DOE Joint Genome Institute (JGI) 3300009789 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes klgravuer@ucdavis.edu Kelly Gravuer No Environmental Terrestrial Grasslands Soil Unclassified Serpentine soil 38.8692 -122.4283 2649809269 5628623 1719 18 2900 33 SRX3007039 Unrestricted 0.0 Metagenome 3300025041 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC4 2012 metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025041 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca Ramunas Stepanauskas; Peter Dunfield No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 49.9543 -116.5155 7.08 43618882 63592 41 0 41 0 SRX2839017 Unrestricted 0.0 Metagenome 3300065612 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 804 in Youngstown, Alberta, Canada - S00JY_0803 Microbiome Insights 3300065612 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.42228558 -111.0505801 45076723 70507 31 0 74 1 0.0 Metagenome 3300001554 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from the Cayman RIse, Caribbean Sea Hydrothermal vent plume microbial communities from the Cayman RIse, Caribbean Sea - Cayman Shallow_MG2b 3300001554 Metagenome Analysis Velvet, MetaVelvet, Minimus released by JGI data releasing policy No Yes menli@umich.edu Meng Li No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 18.3763 -81.7891 2854089 3516 12 0 16 0 0.0 Metagenome 3300037576 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C7-1B DOE Joint Genome Institute (JGI) 3300037576 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 1042604034 2917597 1159 51 2068 72 SRX9166487 Unrestricted 6.27 Metagenome 3300048535 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_131224.NP1 DOE Joint Genome Institute (JGI) 3300048535 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 618176878 1410988 473 64 718 118 Unrestricted 12.25 Metagenome 3300025961 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025961 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 3810786997 9033987 1558 154 2963 267 SRX3203370 Unrestricted 0.0 Metagenome 3300019780 *Microbiome Permanent Draft Metagenomes derived from Kamchatkian Hot springs Sediment microbial community from hot spring at the Mutnovsky volcano, Kamchatka, Russia - sample 1 Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory 3300019780 Metagenome Analysis metaSPAdes v3.10.1 released by JGI data releasing policy No Yes bwemheu@gwdg.de Bernd Wemheuer No Environmental Aquatic Hot (42-90C) Thermal springs Acidic sediment 52.448 158.197 3.5-4 112297081 221908 94 0 135 0 0.0 Metagenome 3300042187 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A10 University of California, Davis 3300042187 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 251650598 684339 298 6 561 7 0.0 Metagenome 3300059764 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1547A-3 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059764 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2314 -123.8828 117933203 252467 109 23 211 31 SRX2753624 Unrestricted 0.0 Metagenome 3300040047 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, Pacific Southwest, CA, USA - SJER_047-M-20170315-COMP-DNA1 Battelle Memorial Institute 3300040047 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.10878 -119.73228 14112262 34732 92 18 147 24 0.0 Metagenome 3300044840 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_42CS DOE Joint Genome Institute (JGI) 3300044840 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4983 -106.0735 1012492219 1645565 320 87 542 97 SRX20649947 Unrestricted 14.8 Metagenome 3300047472 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere DOE Joint Genome Institute (JGI) 3300047472 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5876 -123.1934 985833659 1494776 365 56 548 71 Unrestricted 15.12 Metagenome 3300038950 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Natural salt marsh sediment microbial communities from Abbotts Hall, United Kingdom - W AHNM 3A University of York 3300038950 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Natural salt marsh sediment 51.7865 0.86085 80685558 205539 119 0 198 0 0.0 Metagenome 3300011357 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01025 Weill Cornell Medical College 3300011357 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.82 15558518 21095 8 0 16 1 SRX822987 0.0 Metagenome 3300028809 *Microbiome Permanent Draft Soil microbial communities from agricultural site in Penn Yan, New York, United States Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48 DOE Joint Genome Institute (JGI) 3300028809 Metagenome Analysis spades v. 3.11.1 Yes Yes dbuckley@cornell.edu Dan Buckley No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.673 -77.032 2660936518 7078793 1494 117 2723 210 SRX5338650 Unrestricted 17.74 Metagenome 3300069500 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_044-O-20160815-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069500 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 24133161 84976 72 8 127 15 0.0 Metagenome 3300070582 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_044-M-20170802-COMP-DNA1 Battelle Memorial Institute 3300070582 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 46.231744 -89.53264 5.1-5.59 24011205 71160 108 47 218 57 0.0 Metagenome 3300040655 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_006-M-20140325-COMP-DNA1 Argonne National Laboratory 3300040655 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 1574204 4662 21 1 37 4 ERX2134055 0.0 Metagenome 3300014885 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10D DOE Joint Genome Institute (JGI) 3300014885 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9229 -106.9516 468389036 1042681 328 19 675 31 SRX3780461 Unrestricted 4.74 Metagenome 3300035650 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS64_3 University of Hohenheim 3300035650 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 54351399 86329 50 0 73 0 0.0 Metagenome 3300049986 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 020-ER18-SC-SDNA (version 2) DOE Joint Genome Institute (JGI) 3300049986 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9912 -107.0658 1045148796 2572695 789 56 1475 112 Unrestricted 0.0 Metagenome 3300003382 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S AM DOE Joint Genome Institute (JGI) 3300003382 Metagenome Analysis revert back to private per Christa Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 13561563 39111 172 15 357 21 SRX2574411 Unrestricted 0.0 Metagenome 3300045455 *Microbiome Permanent Draft Groundwater microbial communities from wells in Ash Sharqiyah North Governorate, Oman Groundwater microbial communities from well in Ash Sharqiyah North Governorate, Oman - OM20_BA3A_100 DOE Joint Genome Institute (JGI) 3300045455 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rachel.spietz@montana.edu Rachel Spietz No Environmental Aquatic Groundwater Freshwater Unclassified groundwater 22.8661 58.7105 103556808 151863 86 5 143 10 Unrestricted 667.73 Metagenome 3300029463 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001892-47 Beijing Genomics Institute (BGI) 3300029463 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 106553280 132913 97 0 128 0 0.0 Metagenome 3300040989 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark - 1535-PRJ1066-RD-Sewage-89_S2_L001 Technical University of Denmark 3300040989 Metagenome Analysis Yes Yes No Engineered Wastewater Unclassified Sewage Unclassified Sewage 55.640494 12.5058209 26051942 53529 75 0 116 0 ERX1584030 0.0 Metagenome 3300025133 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025133 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.51 -76.2 517802483 1095939 54 0 67 0 SRX2752502 Unrestricted 0.0 Metagenome 3300008506 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 159510762 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008506 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 222714087 315256 252 0 319 0 0.0 Metagenome 3300030450 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_138 - TARA_R100000781 CEA Genoscope 3300030450 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine 6.3378 -102.9538 205774343 463716 24 0 28 0 0.0 Metagenome 3300041540 *Microbiome Permanent Draft Soil microbial communities from Pirana landfill, Ahmedabad, India Soil microbial communities from Pirana landfill, Ahmedabad, India - LSS03 CeGaT 3300041540 Metagenome Analysis Megahit v. 1.2.9 released by JGI data releasing policy No Yes sharmila.mande@tcs.com, psar@bt.iitkgp.ac.in Dr. Sharmila Mande and Prof. Pinaki Sar No Environmental Terrestrial Unclassified Soil Unclassified Soil 22.980368 72.56212 282796757 567778 432 22 723 49 0.0 Metagenome 3300011585 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metalplastic -P00526 Weill Cornell Medical College 3300011585 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface City subway metal/plastic 40.68 -73.97 26154138 37708 12 0 17 0 SRX822495 0.0 Metagenome 3300031606 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - AG5_Tmax DOE Joint Genome Institute (JGI) 3300031606 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified Marine 70.5467 -122.9077 757034729 1615166 764 118 1177 218 SRX5797749 Unrestricted 20.72 Metagenome 3300001714 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-39 DOE Joint Genome Institute (JGI) 3300001714 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 50.0005 -144.9958 38936985 59363 34 0 44 0 Unrestricted 0.0 Metagenome 3300020254 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001013 (ERX555924-ERR599085) CEA Genoscope 3300020254 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -25.8339 -111.8078 150248433 394154 198 27 389 38 0.0 Metagenome 7000000507 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160218816 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000507 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 124725078 231984 0 0 0 0 0.0 Metagenome 3300002419 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP03-I1 3300002419 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300013747 *Microbiome Permanent Draft Oral microbial communities from fossilized dental plaque from Dalheim, Germany Oral microbial communities from fossilized dental plaque from Dalheim, Germany - S1-Shot-B61-calc University of Oklahoma 3300013747 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skeletonized remains Remains Dental calculus Fossilized dental plaque 51.565093 8.849015 64684388 164073 98 0 213 0 SRX340010 0.0 Metagenome 3300006153 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t30_692P_control - viral_metagenome University of Texas Southwestern Medical Center 3300006153 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 120906049 245961 71 0 134 1 0.0 Metagenome 3300003988 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_CordB_D2 DOE Joint Genome Institute (JGI) 3300003988 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 37.928627 -122.504829 756775692 2179521 699 10 1510 19 SRX7142924 Unrestricted 0.0 Metagenome 3300049614 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MC38 DOE Joint Genome Institute (JGI) 3300049614 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 4295015 11334 29 0 76 0 Unrestricted 49.32 Metagenome 3300043019 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - Beaver5Cecum1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043019 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.18 -122.54 84624518 184711 276 14 467 23 SRX8346442 Unrestricted 51.87 Metagenome 3300003491 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD DOE Joint Genome Institute (JGI) 3300003491 Metagenome Analysis Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 159178630 374092 244 41 408 73 Unrestricted 0.0 Metagenome 3300019716 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FRC_0-1_MG DOE Joint Genome Institute (JGI) 3300019716 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 109826701 265890 217 21 377 42 Unrestricted 3.81 Metagenome 3300011612 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00742 Weill Cornell Medical College 3300011612 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.72 -74.0 29097166 40660 14 0 18 0 SRX822709 0.0 Metagenome 3300028626 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Phe DOE Joint Genome Institute (JGI) 3300028626 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 233495572 384467 182 0 243 0 SRX5281882 Unrestricted 33.92 Metagenome 3300017627 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - L211-11 University of Michigan 3300017627 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.68079 -84.4871 19020094 22901 6 0 9 0 0.0 Metagenome 3300025206 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025206 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Unclassified Roots Unclassified Arabidopsis root 35.9082 -79.0499 67558375 115159 52 1 79 5 SRX1991095 Unrestricted 0.0 Metagenome 3300006992 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300006992 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 3089708 9906 6 3 11 3 SRX024118 0.0 Metagenome 3300026950 *Microbiome Permanent Draft Fumarolic subsurface microbial communities from Tramway Ridge at Mt. Erebus, Antarctica for carbon cycling studies in geothermal environments Geothermal fumarole subsurface microbial communities from Mt. Erebus, Antarctica - 1A2B (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026950 Metagenome Analysis spades v. 3.11.1 Yes Yes craig.herbold@microbial-ecology.net Craig Herbold No Environmental Terrestrial Fumaroles Volcanic Unclassified Fumarolic subsurface -77.5182 167.1113 13512936 22054 11 0 15 0 SRX2555117 Unrestricted 0.0 Metagenome 3300008630 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763496533 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008630 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 72839070 113821 44 0 46 0 0.0 Metagenome 7000000004 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2 of subject 764224817 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000004 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 24444730 56653 0 0 0 0 0.0 Metagenome 3300023262 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #185 DOE Joint Genome Institute (JGI) 3300023262 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 256708329 497870 208 0 386 2 SRX4396747 Unrestricted 13.72 Metagenome 7000000462 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 158337416 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000462 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 141701498 221318 0 0 0 0 0.0 Metagenome 3300005930 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica - Antarctic Deep Lake Metagenome 02WF4 DOE Joint Genome Institute (JGI) 3300005930 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli, Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5627 78.1882 188685715 446094 242 5 381 6 SRX2746570 Unrestricted 0.0 Metagenome 3300027841 *Microbiome Permanent Draft Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027841 Metagenome Analysis spades v. 3.11.1 Yes Yes rallen2@staffmail.ed.ac.uk Rosalind Allen No Environmental Aquatic Pond Freshwater Sediment Freshwater 55.9225 -3.1724 1219495587 2801946 1154 68 2087 126 SRX7158150 Unrestricted 0.0 Metagenome 3300070409 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_043-M-20180718-COMP-DNA1 3300070409 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 37372509 108165 67 4 133 10 0.0 Metagenome 3300046810 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere DOE Joint Genome Institute (JGI) 3300046810 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5876 -123.1936 695598022 1064947 260 55 392 67 Unrestricted 23.21 Metagenome 3300025926 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025926 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 3355487923 7761759 1221 72 2279 133 SRX2740373 Unrestricted 0.0 Metagenome 3300027167 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF034 (SPAdes) DOE Joint Genome Institute (JGI) 3300027167 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 28941079 84995 34 3 63 4 SRX2014378 Unrestricted 0.0 Metagenome 3300050359 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - YNP_CreekBiofilm_4 DOE Joint Genome Institute (JGI) 3300050359 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 172322421 234248 98 6 115 7 Unrestricted 488.91 Metagenome 3300053642 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA - Treefall.Jun18 metaG DOE Joint Genome Institute (JGI) 3300053642 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.5322 -110.7965 8-9 252627263 591206 174 1 254 2 Unrestricted 78.19 Metagenome 3300021250 *Microbiome Finished Oil well rock microbial communities from petroleum reservoir, Carmopolis, SE, Brazil - Rocha G46 - 966 Oil well rock microbial communities from petroleum reservoir, Carmopolis, SE, Brazil - Rocha G46 - 966 Federal University of Rio Grande do Norte 3300021250 Metagenome Analysis Geneious released by JGI data releasing policy No Yes lfagnez@ufrnet.br Lucymara Agnez-Lima No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil reservoir rock -10.6453 -36.9891 601579796 2737137 8980 3 16331 11 0.0 Metagenome 3300001292 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - Naphthalene biodegradation metagenome 13C3doseB DOE Joint Genome Institute (JGI) 3300001292 Metagenome Analysis No Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.292222 -73.604444 21108176 34228 14 1 15 2 Unrestricted 0.0 Metagenome 3300009982 *Microbiome Permanent Draft Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_189 metaG DOE Joint Genome Institute (JGI) 3300009982 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes esinger@lbl.gov; twoyke@lbl.gov Esther Singer; Tanja Woyke No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass associated 30.387 -97.7301 33605184 73649 35 5 58 9 SRX2524286 Unrestricted 0.0 Metagenome 3300043386 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 215-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043386 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.8573 -107.0916 497791428 1406010 522 19 994 46 Unrestricted 6.82 Metagenome 3300050565 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_SEK2_4_to_SEK2 DOE Joint Genome Institute (JGI) 3300050565 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.245 472854357 770755 219 72 319 116 Unrestricted 22.96 Metagenome 3300029215 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021239-113 Beijing Genomics Institute (BGI) 3300029215 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 140679542 187465 115 0 181 0 0.0 Metagenome 3300069636 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_002-M-20140415-COMP-DNA1 re-annotation Argonne National Laboratory 3300069636 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 10066864 29924 31 4 54 4 ERX2133933 0.0 Metagenome 3300027189 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - High salinity metaG S.579 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027189 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 101498094 238530 168 67 254 128 SRX2753577 Unrestricted 23.3 Metagenome 3300070668 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Bartlett Experimental Forest, New Hampshire, USA - BART_004-O-20170614-COMP-DNA1 3300070668 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 16341501 50481 25 7 62 19 0.0 Metagenome 3300013276 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100637 University of Pennsylvania 3300013276 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 40142076 68398 17 0 25 0 SRX756457 0.0 Metagenome 7000000180 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159490532 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000180 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 25494081 50947 0 0 0 0 0.0 Metagenome 3300000710 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 67 DOE Joint Genome Institute (JGI) 3300000710 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 11650658 33878 59 0 85 0 SRX4341314 Unrestricted 0.0 Metagenome 3300029268 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_19m DOE Joint Genome Institute (JGI) 3300029268 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater 39.9879 -1.8737 1451101587 2771015 1231 27 1979 48 SRX5338803 Unrestricted 13.36 Metagenome 3300007611 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_A_H2O_MG DOE Joint Genome Institute (JGI) 3300007611 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Pond water 37.4969 -122.1331 492973178 741980 180 16 339 47 SRX2523450 Unrestricted 0.0 Metagenome 3300040544 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_004-M-24-15-20140708-GEN-DNA1 Argonne National Laboratory 3300040544 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 2683937 7276 15 2 28 4 ERX2134034 0.0 Metagenome 3300021461 *Microbiome Permanent Draft Longitudinal study of halite endolithic microbial communities Halite endolithic microbial communities from Salar Grande, Atacama Desert, Chile - SG1-2014-09 Johns Hopkins University 3300021461 Metagenome Analysis metaSPAdes v.3.11.1 released by JGI data releasing policy Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Halite pinnacle -20.95319 -70.019951 790976118 1164211 159 12 276 9 0.0 Metagenome 3300070615 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_024-O-20200810-COMP-DNA1 3300070615 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 10501524 35145 57 6 130 5 0.0 Metagenome 3300031454 *Microbiome Permanent Draft Rock endolithic microbial communities from Victoria Land, Antarctica Rock endolithic microbial communities from Victoria Land, Antarctica - Siegfried Peak sud DOE Joint Genome Institute (JGI) 3300031454 Metagenome Analysis spades v. 3.12.0 Yes Yes selbmann@unitus.it Laura Selbmann Yes 32139564 Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock -77.57 161.8 710649552 1026908 258 14 283 11 SRX5225161 Unrestricted 40.31 Metagenome 3300030037 *Microbiome Permanent Draft Oil enriched seawater microbial communities from Gulf of Mexico, USA Oil enriched seawater microbial communities from Gulf of Mexico, USA - BD02T64 Lawrence Berkeley National Laboratory 3300030037 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes Yes 28652349 Environmental Aquatic Oceanic Marine Oil-contaminated Oil enriched seawater 24.74 -88.37 268785744 391221 215 0 250 0 SRX1796715 0.0 Metagenome 3300014256 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleB_D2 DOE Joint Genome Institute (JGI) 3300014256 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.052509 -121.76873 254405694 639579 482 11 952 16 SRX7181947 Unrestricted 0.0 Metagenome 3300001057 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1105 DOE Joint Genome Institute (JGI) 3300001057 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 204361 604 14 1 25 2 SRX1987007 Unrestricted 0.0 Metagenome 3300032193 *Microbiome Permanent Draft Microbial communities from various environments in Magnetic Island Reef, Townsville, Australia Seawater microbial communities from Magnetic Island Reef, Townsville, Australia - 36308 AGRF 3300032193 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes b.glasl@aims.gov.au Bettina Glasl No Environmental Aquatic Coastal Marine Unclassified Seawater -19.1531 146.8641 1026345617 2374371 408 69 589 150 0.0 Metagenome 3300038545 *Microbiome Permanent Draft Oyster larvae and tank water microbial communities from oyster tank in Dauphin Island, Alabama, USA Water microbial communities from oyster tank in Dauphin Island, Alabama, USA - 111W U.S. Food and Drug Administration 3300038545 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Aquaculture Unclassified Water 30.25 -88.11 40506689 78149 65 0 86 0 0.0 Metagenome 3300030906 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3 DOE Joint Genome Institute (JGI) 3300030906 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 3989702171 7570745 717 55 1030 111 SRX5357901 Unrestricted 16.49 Metagenome 3300027448 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G08K5-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300027448 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 5265938 16031 39 1 59 4 SRX1991293 Unrestricted 0.0 Metagenome 3300047553 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Blue River, Connerville, Oklahoma, USA - blueriver_2019_sw_WHONDRS-S19S_0024 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047553 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 34.4425 -96.6225 434385327 672660 226 24 327 34 Unrestricted 0.0 Metagenome 3300012486 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.120510 DOE Joint Genome Institute (JGI) 3300012486 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Environmental Terrestrial Unclassified Soil Unclassified soil 35.9076 -79.0506 90278842 247916 196 8 410 24 SRX3527428 Unrestricted 0.0 Metagenome 3300003898 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 m-RNA DAY 07 University of Sao Paulo, Virginia Bioinformatics Institute 3300003898 Metagenome Analysis SoapDeNovo 2 released per PI's request No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 51294363 105390 21 36 42 117 0.0 Metagenome 3300024515 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_UVDOM_RepB_8d DOE Joint Genome Institute (JGI) 3300024515 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 229008144 458761 185 16 291 15 SRX4547362 Unrestricted 12.09 Metagenome 3300065585 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 781 in Three Hills, Alberta, Canada - S00JY_0793 Microbiome Insights 3300065585 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.46151696 -113.1723542 146296457 208555 59 3 124 6 0.0 Metagenome 3300001645 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036 DOE Joint Genome Institute (JGI) 3300001645 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 7181706 22839 27 4 68 5 SRX2014379 Unrestricted 0.0 Metagenome 3300041689 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_387 MetaG AgResearch, New Zealand, Mosgeil 3300041689 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1210816023 2629123 273 40 1113 61 0.0 Metagenome 3300030226 *Microbiome Permanent Draft Marine Fish Microbial Metagenomes Leopard shark gut microbial communities from Southern California Bight, Pacific Ocean - XTSA_D University of California, San Diego, Scripps Institute of Oceanography 3300030226 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton No Host-associated Fish Intestine Digestive system Unclassified fish gut 32.85047778 -117.2705806 1828010 2704 1 0 1 1 0.0 Metagenome 3300006882 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T10 (2) BES, Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006882 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com; tianakorin@googlemail.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis; Tetyana Korin No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 42890730 73171 54 0 103 0 0.0 Metagenome 3300022170 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-9-10_MG DOE Joint Genome Institute (JGI) 3300022170 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.0114 -110.5956 116537782 266968 102 0 146 3 SRX3982359 Unrestricted 96.76 Metagenome 3300049910 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Para, Brazil - P15 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300049910 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Pasture Soil Agricultural land Soil -3.2948 -54.852 962179176 2167301 347 9 671 6 Restricted 0.0 Metagenome 2022004001 *Microbiome Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI - Type I v1 DOE Joint Genome Institute (JGI) 2022004001 Metagenome Analysis Newbler released based on JGI ITS No Yes tmcmahon@engr.wisc.edu, tmcmahon@engr.wisc.edu; 1422460556@qq.com; 15527825168@163.com Katherine McMahon, Katherine McMahon; Song Wei; GuoFeng Yes 20148930 Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Wastewater treatment 43.078418 -89.386482 7-7.5 67066628 139196 25 0 76 0 Unrestricted 0.0 Metagenome 3300039229 *Microbiome Permanent Draft Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada - high-flow bush EMw4 Dalhousie University 3300039229 Metagenome Analysis Megahit v. 1.2.8 released by JGI data releasing policy No Yes smurdock@uvic.ca Sheryl Murdock No Environmental Aquatic Hydrothermal vents Marine Tubeworm bush tubeworm bush 47.95 -129.097 793032311 1516564 483 15 739 23 0.0 Metagenome 3300000550 *Microbiome Permanent Draft Soil microbial communities from Kansas Great Prairie, USA, amended with BrdU Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly DOE Joint Genome Institute (JGI) 3300000550 Metagenome Analysis Clc-workbench Released on PI's approval No Yes maude.david@yahoo.fr Maude David No Environmental Terrestrial Loam Soil Grasslands Soil 39.100992 -96.608258 2504491806 10542495 650 18 1604 90 0.0 Metagenome 3300036661 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 E-2-X DOE Joint Genome Institute (JGI) 3300036661 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 263752811 671731 406 6 646 14 SRX8160425 Unrestricted 6.07 Metagenome 3300010318 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_DNA (version 2) DOE Joint Genome Institute (JGI) 3300010318 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 37.5161 -76.1223 500767703 1103071 262 28 472 45 SRX2526851 Unrestricted 0.0 Metagenome 3300041667 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_148 MetaG AgResearch, New Zealand, Mosgeil 3300041667 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 0 0 0 0 0 0 0.0 Metagenome 3300026654 *Microbiome Permanent Draft Fumarolic subsurface microbial communities from Tramway Ridge at Mt. Erebus, Antarctica for carbon cycling studies in geothermal environments Geothermal fumarole subsurface microbial communities from Mt. Erebus, Antarctica - 1A2D (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026654 Metagenome Analysis spades v. 3.11.1 Yes Yes craig.herbold@microbial-ecology.net Craig Herbold No Environmental Terrestrial Fumaroles Volcanic Unclassified Fumarolic subsurface -77.5182 167.1113 5572302 15989 3 0 4 0 SRX2555369 Unrestricted 0.0 Metagenome 3300040782 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Etang de Berre, Marignane, France - D172 Genopole Toulouse Midi-Pyrenees 3300040782 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.4847 5.188 107004679 222505 202 41 341 74 0.0 Metagenome 3300038406 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVT2_Jul25_78_v DOE Joint Genome Institute (JGI) 3300038406 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2089393033 3293542 640 9 1041 10 SRX9162584 Unrestricted 15.69 Metagenome 3300020592 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Organic Plus compost microbial communities from Emeryville, California, USA - eDNA 5th pass 37_C Kraft OP (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300020592 Metagenome Analysis spades v. 3.10.1 Yes Yes JMGladden@lbl.gov John Gladden No Engineered Solid waste Composting Mixed feedstock Commercial compost compost 37.83 -122.29 341814902 537419 178 1 237 2 SRX4063403, SRX4063404 Unrestricted 0.0 Metagenome 3300039909 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 051_R1_022417 University of Maryland 3300039909 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 61.00624722 25.65335 25366176 47478 43 4 55 6 0.0 Metagenome 3300009892 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY17 University of New South Wales 3300009892 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 19145456 31798 13 0 26 1 0.0 Metagenome 3300002632 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A2-11 DOE Joint Genome Institute (JGI) 3300002632 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 687944 2247 44 0 68 0 SRX1991137 Unrestricted 0.0 Metagenome 3300029850 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37175 Beijing Genomics Institute (BGI) 3300029850 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 167240354 208728 139 0 191 0 0.0 Metagenome 3300037537 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR08_20 DOE Joint Genome Institute (JGI) 3300037537 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Crustal Fluids crustal fluids 47.7534 -127.7638 850957449 1982432 666 145 1209 278 SRX9096344 Unrestricted 16.24 Metagenome 3300004630 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Worm MetaG Olavius vacuus BAHAMAS.1 DOE Joint Genome Institute (JGI) 3300004630 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 834199456 1656889 2 5 5 25 SRX3299593, SRX3299594 Unrestricted 0.0 Metagenome 3300069259 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_003-O-20210622-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069259 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 45.831516 -122.018608 3871697658 7877178 1069 174 2158 319 0.0 Metagenome 3300045113 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - MERB-8-26-19 DOE Joint Genome Institute (JGI) 3300045113 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.2727 -120.56 358870381 924376 528 83 949 134 Restricted 8.62 Metagenome 2044078007 *Microbiome Permanent Draft Dendroctonus frontalis microbial communities from southwest Mississippi, USA Dendroctonus frontalis fungal communities from Mississippi, USA DOE Joint Genome Institute (JGI) 2044078007 Metagenome Analysis Newbler No Yes gsuen@wisc.edu Garret Suen Yes 25406380 Environmental Terrestrial Insects nest Nest Fungus garden/Fungus gallery Dendroctonus frontalis 31.5 -90.9 72612852 130832 38 0 65 0 0.0 Metagenome 3300001629 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF006 DOE Joint Genome Institute (JGI) 3300001629 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 1913971 5636 20 4 50 6 SRX2014320 Unrestricted 0.0 Metagenome 3300035327 *Microbiome Permanent Draft Mouse fecal microbial communities from various locations Fecal microbial communities from mouse strain C57Bl/6 in Sweden - S Fe3 Beijing Genomics Institute (BGI) 3300035327 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 57.69745 11.98583 217398516 293569 246 0 349 0 0.0 Metagenome 3300057018 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Colorado, USA - BV_H1_S1 DOE Joint Genome Institute (JGI) 3300057018 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 40.98962 -106.61085 7784330 15918 18 5 43 7 Unrestricted 1517.19 Metagenome 3300046822 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 soil DOE Joint Genome Institute (JGI) 3300046822 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121579 -123.269208 4.88 1035195986 1664657 344 14 478 29 Unrestricted 12.26 Metagenome 3300025767 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025767 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 638772387 1132193 373 33 535 64 SRX2569219 Unrestricted 0.0 Metagenome 3300021160 *Microbiome Permanent Draft Freshwater planktonic and plastic biofilm microbial communities in Lake Erie, USA Freshwater plastic biofilm microbial communities near Cleveland Ohio Easterly WWTP outflow, Lake Erie, USA - MD2014-0200B University of Michigan 3300021160 Metagenome Analysis Megahit v1.1.1 released by JGI data releasing policy No Yes gumm@umich.edu Jordan Gumm No Environmental Aquatic Lake Freshwater Unclassified lake plastic biofilm near wastewater outflow 41.58 -81.59 8744041 9099 0 1 0 1 0.0 Metagenome 3300037811 *Microbiome Permanent Draft Bacterial communities from sewage treatment works near Birtley, UK Sludge bacterial communities from sewage treatment works near Birtley, UK - 43A Northumbria University 3300037811 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes martin.spurr@newcastle.ac.uk Martin Spurr No Engineered Bioreactor Sludge Wastewater Unclassified wastewater 54.903212 -1.595078 935621 2212 10 0 8 0 0.0 Metagenome 3300014166 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015 DOE Joint Genome Institute (JGI) 3300014166 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 1155844139 2747785 699 30 1277 58 SRX3048032, SRX3048033 Unrestricted 4.06 Metagenome 3300014639 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01400 Weill Cornell Medical College 3300014639 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.6 -73.98 21181686 32554 10 0 15 0 SRX823340 0.0 Metagenome 7000000481 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 765074482 replicate 1 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000481 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 156808270 272802 0 0 0 0 0.0 Metagenome 3300038529 *Microbiome Finished Worm gut microbial community from Minas Gerais, Brazil Worm gut microbial community from Minas Gerais, Brazi - A2l Federal University of Parana 3300038529 Metagenome Analysis CLC Genomics Workbench v. 7 released by JGI data releasing policy No Yes estherhadassaa@gmail.com Esther Esteves No Host-associated Annelida Unclassified Digestive system Unclassified Worm gut -19.8157 -43.9542 24161061 96707 1 1 3 4 0.0 Metagenome 2014642004 *Microbiome Permanent Draft Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) - 7_Deep_abyss_4000m DOE Joint Genome Institute (JGI) 2014642004 Metagenome Analysis No Yes delong@mit.edu Edward DeLong Yes 16439655 Environmental Aquatic Oceanic Marine Abyssal plane Marine 22.45 -158.0 11028821 16740 2 0 0 0 0.0 Metagenome 3300023281 *Microbiome Permanent Draft Sediment microbial communities from Stefan Fjord, Tortel, Patagonia, Chile Sediment microbial communities from Stefan Fjord, Tortel, Patagonia, Chile - Sample 1 University of Bristol 3300023281 Metagenome Analysis SPADES v. 3.11.1 released by JGI data releasing policy No Yes maisie.nash@bristol.ac.uk Maisie Nash No Environmental Aquatic Unclassified Sediment Unclassified sediment -47.63955 -73.667433 6.766 197488635 237969 23 4 13 5 0.0 Metagenome 3300026383 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Leaf surface microbial communities from sunflower plants in UC Gill Tract Community Farm, Albany, California, United States - DLSL S.R1 DOE Joint Genome Institute (JGI) 3300026383 Metagenome Analysis spades v. 3.11.1 Yes Yes icelab@berkeley.edu Steven Lindow No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf surface 37.8864 -122.2981 152652060 249921 116 3 182 4 SRX5295433, SRX5295432 Unrestricted 0.0 Metagenome 3300011620 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00739 Weill Cornell Medical College 3300011620 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.74 -73.99 28039107 41795 18 0 26 0 SRX822706 0.0 Metagenome 3300028755 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356 DOE Joint Genome Institute (JGI) 3300028755 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92029456 -106.94875775 845380864 2178757 476 14 833 23 SRX5355404 Unrestricted 11.73 Metagenome 3300044502 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_260 DOE Joint Genome Institute (JGI) 3300044502 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 710109030 1559483 448 7 785 12 Unrestricted 8.33 Metagenome 3300029158 *Microbiome Permanent Draft Infant fecal microbial communities from Pittsburgh, USA Infant fecal microbial communities from Pittsburgh, USA - NECEvent2014_2_3 Banfield Lab, University of California, Berkeley 3300029158 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant fecal 40.4308 -79.9598 25649944 30234 77 0 68 0 0.0 Metagenome 3300009961 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 14 Autonomous University of Barcelona 3300009961 Metagenome Analysis SPAdes-3.8.1-Linux released per JGI data release policy Yes Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 6852121 12502 4 0 1 0 0.0 Metagenome 3300013199 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100331 University of Pennsylvania 3300013199 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12016856 18936 9 4 35 8 SRX756326 0.0 Metagenome 3300039370 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 624_B Beijing Genomics Institute (BGI) 3300039370 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 25670325 27132 14 0 22 0 ERX491277 0.0 Metagenome 3300027257 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027257 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 152795104 409937 451 190 820 300 SRX1985673, SRX1985672, SRX2021678 Unrestricted 0.0 Metagenome 3300041802 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - TR_31_wk_3 DOE Joint Genome Institute (JGI) 3300041802 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9664 -107.059 203799827 543542 314 10 602 19 SRX14808397 Unrestricted 7.67 Metagenome 3300022878 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L111-311C-4 DOE Joint Genome Institute (JGI) 3300022878 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 306803990 760676 507 115 942 176 SRX4799562 Unrestricted 8.27 Metagenome 3300038830 *Microbiome Permanent Draft Agricultural soil microbial communities from Queensland, Australia Agricultural soil microbial communities from Queensland, Australia - soybean_soil4 University of Queensland 3300038830 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Unclassified Soil Agricultural land Agricultural soil -25.025508 152.379908 4493772 13645 66 9 130 15 0.0 Metagenome 3300029393 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 091_5_3_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029393 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 219722772 298072 221 0 308 0 0.0 Metagenome 3300042677 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A48 University of California, Davis 3300042677 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 185883054 536158 288 14 555 22 0.0 Metagenome 3300021482 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-6-7_MG DOE Joint Genome Institute (JGI) 3300021482 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.0114 -110.5956 104314933 219294 118 0 202 0 SRX3982248 Unrestricted 15.79 Metagenome 3300003190 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment Column5K7-0 454 Life Sciences 3300003190 Metagenome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.342219 40.479289 6-8 0 0 0 0 0 0 0.0 Metagenome 3300000722 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 45 DOE Joint Genome Institute (JGI) 3300000722 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 12926656 52379 31 0 71 1 SRX4340969 Unrestricted 0.0 Metagenome 3300009041 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T10 (1) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2) Shell Corporation 3300009041 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 120351480 397203 180 0 391 3 0.0 Metagenome 3300025789 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE07Jul09 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025789 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 149423457 307589 94 23 132 36 SRX2565219 Unrestricted 0.0 Metagenome 3300045599 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TST27 DOE Joint Genome Institute (JGI) 3300045599 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.414 73108221 106280 113 4 134 7 SRX12687754 Unrestricted 132.5 Metagenome 3300014773 *Microbiome Permanent Draft Activated sludge bacterial and viral communities from EBPR bioreactors in Australia Activated sludge bacterial and viral communities from EBPR bioreactors in Queensland, Australia - SBR4-V92810 California Institute of Technology 3300014773 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Activated sludge -27.49999 153.01209 69567008 165157 52 6 105 9 SRX1113224 0.0 Metagenome 3300028568 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant20 DOE Joint Genome Institute (JGI) 3300028568 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1150727 -123.147 852445174 1439026 805 8 1152 16 SRX5248656 Unrestricted 38.83 Metagenome 3300000663 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 36 DOE Joint Genome Institute (JGI) 3300000663 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 2309511 7754 26 0 39 0 SRX4340824 Unrestricted 0.0 Metagenome 3300037465 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from California, United States - Mound Spring (MOS_S4) DOE Joint Genome Institute (JGI) 3300037465 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Warm (34-42C) Thermal springs Unclassified Desert spring 37.0233 -117.3845 6.89 2874603114 3772874 1038 20 1563 24 SRX9167300 Unrestricted 17.6 Metagenome 3300031796 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24 DOE Joint Genome Institute (JGI) 3300031796 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1194618186 2869101 471 2 744 8 SRX5820398 Unrestricted 12.34 Metagenome 3300043208 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_10 (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043208 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 248985633 412672 70 3 104 4 SRX8240583 Unrestricted 70.28 Metagenome 3300013941 *Microbiome Permanent Draft Epidermal mucus viral and microbial communities from European eel in Spain Epidermal mucus viral and microbial communities from European eel in Spain - water from Alfacada pond (Ebro delta) University of Valencia 3300013941 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Fish Skin Integumentary system Epidermal mucus Epidermal mucus 40.647955 -0.738702 83839665 226430 50 3 98 11 SRX710703 0.0 Metagenome 3300002846 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Oil sands tailings microbial communities from Canada - PDIso6.NVTR2AOpititus McGill University 3300002846 Metagenome Analysis SPAdes3.1.0 released per request No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 57.00921 -111.6237 8.6 4716630 4418 1 0 4 0 0.0 Metagenome 3300006147 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t14_691P_inflammed- viral_metagenome University of Texas Southwestern Medical Center 3300006147 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 211094793 391156 144 0 217 0 0.0 Metagenome 3300034138 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 51SNC DOE Joint Genome Institute (JGI) 3300034138 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological biocrust 34.3778 -117.6098 383817356 871911 535 70 936 96 SRX7621477 Unrestricted 8.61 Metagenome 3300027092 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF023 (SPAdes) DOE Joint Genome Institute (JGI) 3300027092 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 9156595 30177 33 15 83 23 SRX2014345 Unrestricted 0.0 Metagenome 3300013753 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S20-01-D University of California, Los Angeles 3300013753 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 233713808 368276 190 2 263 6 SRX862799 0.0 Metagenome 3300007050 *Microbiome Permanent Draft Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Stylissa sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina ""control"", st7u" University of New South Wales 3300007050 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.wesbter@aims.gov.au Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Stylissa sp. (marine sponge) -9.752083 150.854133 62437910 152578 22 6 34 7 0.0 Metagenome 3300028515 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 1 Selected contigs with viral hallmark genes 2 Autonomous University of Barcelona 3300028515 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 1702328 2505 0 0 0 0 0.0 Metagenome 3300020307 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000408 (ERX555989-ERR599021) CEA Genoscope 3300020307 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -29.5082 37.9202 193605938 477170 230 25 408 43 0.0 Metagenome 3300037418 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 DOE Joint Genome Institute (JGI) 3300037418 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 37.9315 -122.0212 2355610946 3827005 803 166 1184 256 Unrestricted 22.64 Metagenome 3300049202 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - J14_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049202 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 342918644 754966 341 17 624 28 Unrestricted 0.0 Metagenome 3300034406 *Microbiome Permanent Draft Hypersaline lacustrine bacterial communities from Kiritimati Island Lacustrine bacterial communities from hypersaline Lake 1, Kiritimati Island, Kiribati - 38 cm University of Illinois, Urbana-Champaign 3300034406 Metagenome Analysis MEGAHIT v. 1.1.1 released by Mingfei Chen No Yes jconro@illinois.edu Jessica Conroy No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Sediment lacustrine 1.9 -157.4 122206074 253734 86 0 174 1 0.0 Metagenome 3300002795 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G08K2-12 DOE Joint Genome Institute (JGI) 3300002795 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 56469 199 12 0 16 0 SRX1991280 Unrestricted 0.0 Metagenome 3300070526 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Arizona, USA - SRER_004-M-20180801-COMP-DNA1 Battelle Memorial Institute 3300070526 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.906778 -110.815262 8.98-9.07 36716953 105892 100 1 220 2 0.0 Metagenome 3300011343 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100731 University of Pennsylvania 3300011343 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4001540 5197 4 2 10 1 SRX756119 0.0 Metagenome 3300022471 *Microbiome Permanent Draft Lab enrichment of oil well microbial communities from petroleum reservoir, Santos, SP, Brazil - 6029 - 6172 Lab enrichment of oil well microbial communities from petroleum reservoir, Santos, SP, Brazil - 6029 - 6172 Federal University of Rio Grande do Norte 3300022471 Metagenome Analysis Geneious10.2.3 released by JGI data releasing policy No Yes lfagnez@ufrnet.br Lucymara Agnez-Lima No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil reservoir -23.9561 -46.3264 611983249 2455978 2455223 50 0 0 0.0 Metagenome 3300011204 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00209 Weill Cornell Medical College 3300011204 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.64 -73.97 33198221 46116 21 0 33 0 SRX822188 0.0 Metagenome 3300025388 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE31Jul07 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025388 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 105624497 246997 119 42 136 71 SRX2565363 Unrestricted 0.0 Metagenome 3300040053 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_001-O-20170612-COMP-DNA1 Battelle Memorial Institute 3300040053 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 13429968 38421 37 3 64 9 0.0 Metagenome 3300031845 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18 DOE Joint Genome Institute (JGI) 3300031845 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1275444817 3229428 405 7 713 11 SRX5817804 Unrestricted 12.28 Metagenome 3300002003 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot11-3 3300002003 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 2439890 14413 68 3 119 10 0.0 Metagenome 3300033698 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from gas well in Marcellus Shale, West Virginia, United States - MIP5H_12222015 Ohio State University 3300033698 Metagenome Analysis IDBA-UD v. 1.1.1 No Yes rebdaly@colostate.edu Rebecca Daly No Environmental Terrestrial Fracking water Deep subsurface Unclassified Fracking Water 39.6017 -79.9761 24287839 24210 7 0 2 0 0.0 Metagenome 3300005463 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0125m University of Hawaii 3300005463 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 5197944 9793 31 1 46 2 0.0 Metagenome 3300049922 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T25 (v3) (version 3) DOE Joint Genome Institute (JGI) 3300049922 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 49653680 96173 57 3 155 4 Unrestricted 0.0 Metagenome 3300047660 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BT26-05_D100 (version 2) DOE Joint Genome Institute (JGI) 3300047660 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3555 19.0492 154758828 224467 71 11 78 18 Restricted 0.0 Metagenome 3300009133 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Hot Lake Consortium UCC-SL28 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300009133 Metagenome Analysis metalrec v. 1.0.2 Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hypersaline mat 48.972613 -119.477608 380042747 844906 444 1 755 4 SRX2575235, SRX2575236, SRX2575233, SRX2575234, SRX2575237, SRX2575232 Unrestricted 0.0 Metagenome 3300011924 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00419 Weill Cornell Medical College 3300011924 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -74.0 20290646 28292 19 0 26 0 SRX822388 0.0 Metagenome 3300053101 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 endosphere DOE Joint Genome Institute (JGI) 3300053101 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.120936 -123.269747 484578572 614589 73 118 99 136 Unrestricted 0.0 Metagenome 3300018420 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300018420 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1644891640 3619312 1259 167 2298 264 SRX4071348 Unrestricted 17.67 Metagenome 3300036568 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C2-9A DOE Joint Genome Institute (JGI) 3300036568 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 73311872 231284 179 5 337 8 SRX8816861 Unrestricted 4.39 Metagenome 3300029930 *Microbiome Permanent Draft Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727 University of Hong Kong 3300029930 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Drinking water Freshwater Unclassified Aquatic 95455999 232539 92 8 191 14 SRX246994 0.0 Metagenome 3300030076 *Microbiome Permanent Draft Ice-cream associated microbial communities from Maryland, United States Ice-cream associated microbial communities from Maryland, United States - 48 _R4 U.S. Food and Drug Administration 3300030076 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Ice-cream associated 38.98 -76.93 3077519 3179 3 0 1 0 0.0 Metagenome 3300037213 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 711 E-2-D DOE Joint Genome Institute (JGI) 3300037213 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0465 683819506 1341527 333 2 572 3 SRX8146806 Unrestricted 9.04 Metagenome 3300009926 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA6 University of New South Wales 3300009926 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 75740294 125305 100 3 129 5 0.0 Metagenome 3300060420 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210602_06_09 DOE Joint Genome Institute (JGI) 3300060420 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 741491335 1107457 259 117 356 164 Unrestricted 25.42 Metagenome 3300041835 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - C_29_wk_5 DOE Joint Genome Institute (JGI) 3300041835 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9346 -107.011 193632265 555521 318 20 564 24 SRX14809813 Unrestricted 8.23 Metagenome 3300043403 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Martha Creek, Stabler, Washington, USA - marthacreek_2019_sw_WHONDRS-S19S_0030 DOE Joint Genome Institute (JGI) 3300043403 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 45.7922 -121.9299 398965543 738837 517 161 811 274 Unrestricted 18.87 Metagenome 3300013237 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100247 University of Pennsylvania 3300013237 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17585347 33977 16 1 26 1 SRX756654 0.0 Metagenome 3300005268 *Microbiome Permanent Draft Hypersaline microbial communities from Antarctic Deep Lake Hypersaline microbial communities from Antarctic Deep Lake - 24m 3.0um v2 (version 3) DOE Joint Genome Institute (JGI) 3300005268 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli, Rick Cavicchioli; Michelle Allen Yes 24082106 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline -68.54 78.18 46756487 89675 31 1 70 1 Unrestricted 0.0 Metagenome 3300042259 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA MBR feed microbial communities from membrane bioreactor in Denver, Colorado, USA - FD_D56_01 DOE Joint Genome Institute (JGI) 3300042259 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Wastewater Mine water Industrial wastewater Produced water MBR feed 39.7823 -104.9101 307337599 464153 254 2 324 7 Unrestricted 31.49 Metagenome 3300034654 *Microbiome Permanent Draft Extreme environments viral communities from various locations Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244 DOE Joint Genome Institute (JGI) 3300034654 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified filtered seawater 13.5136 -44.9628 175742297 422241 20 2 28 14 SRX7583397 Unrestricted 63.7 Metagenome 3300000209 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P20 2000m DOE Joint Genome Institute (JGI) 3300000209 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 49.566667 -138.666667 64433866 147783 47 20 104 36 Unrestricted 0.0 Metagenome 3300027679 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300027679 Metagenome Analysis spades v. 3.11.1 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 505696469 1044206 214 43 330 68 Unrestricted 0.0 Metagenome 7000000670 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160158126 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000670 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 147533160 264435 0 0 0 0 0.0 Metagenome 3300054114 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 DOE Joint Genome Institute (JGI) 3300054114 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.407926 -82.180036 1998781407 3317145 713 24 1239 44 Restricted 14.66 Metagenome 3300049328 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC3 DOE Joint Genome Institute (JGI) 3300049328 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 69196587 173396 195 12 415 22 Unrestricted 30.1 Metagenome 3300001131 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 DOE Joint Genome Institute (JGI) 3300001131 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 114612556 275935 159 40 273 69 SRX3312369 Unrestricted 0.0 Metagenome 3300039079 *Microbiome Permanent Draft Freshwater lake viral communities from Lake Michigan, near Chicago, USA Freshwater lake viral communities from Lake Michigan, near Chicago, USA- Wilmette140722.1V Genewiz Inc., Loyola University 3300039079 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 42.0791 -87.683 42110140 86727 56 0 81 0 0.0 Metagenome 3300042842 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196 NMDC pilot DOE Joint Genome Institute (JGI) 3300042842 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040586 -106.94868265 700361553 1894579 605 24 1132 43 SRX5355400 0.0 Metagenome 3300064912 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 727 in Wetaskiwin, Alberta, Canada - S00JY_0181 Microbiome Insights 3300064912 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.53069413 -113.1733318 91581368 130183 55 2 91 1 0.0 Metagenome 3300025982 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_105 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025982 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 102321486 264919 192 5 319 7 SRX2564562, SRX2581063 Unrestricted 0.0 Metagenome 3300000929 *Microbiome Permanent Draft Freshwater and marine microbial communities from the Columbia River, USA, of estuaries and plumes across salinity gradients Marine plume microbial communities from the Columbia River - 15 PSU University of Maryland 3300000929 Metagenome Analysis released per PI's request No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato Yes 26536246 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Freshwater and marine 46.239 -124.161 448564426 1055341 128 12 313 19 0.0 Metagenome 3300014121 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In4 SAF170 SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300014121 Metagenome Analysis SPAdes 3.10.0 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1 -118.1 9462769 15543 10 4 26 5 Unrestricted 0.0 Metagenome 3300005215 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Tolay_CordB_D2 DOE Joint Genome Institute (JGI) 3300005215 Metagenome Analysis Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.15012 -122.438774 726812842 2254220 845 9 1823 16 SRX7144823 Unrestricted 0.0 Metagenome 3300044535 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jul2005-rr0321 DOE Joint Genome Institute (JGI) 3300044535 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 801816344 1251276 280 45 370 60 Unrestricted 20.98 Metagenome 3300065620 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 806 in Chinook, Alberta, Canada - S00JY_0344 Microbiome Insights 3300065620 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.26457862 -110.5952179 237833026 336210 78 2 142 2 0.0 Metagenome 3300035011 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Nostoc indistinguendum CM1-VF10 and co-occurring heterotrophs from soil from Clark Mountains, San Bernardino, California, United States - 20181120_34 DOE Joint Genome Institute (JGI) 3300035011 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.635 -115.5124 42908449 52470 15 0 14 0 SRX8239040 Unrestricted 238.52 Metagenome 3300070561 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_005-M-20170721-COMP-DNA1 Battelle Memorial Institute 3300070561 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 68.560148 -149.528532 5.09-5.74 77026513 220575 85 4 189 7 0.0 Metagenome 3300040726 *Microbiome Permanent Draft Deep subsurface microbial community underneath the Deccan traps, India Deep subsurface rock microbial communities from Deccan Traps, India - C2 CeGaT 3300040726 Metagenome Analysis MEGAHIT v. 1.2.9 released by JGI data releasing policy No Yes sprajendra94@gmail.com rajendra prasad No Environmental Terrestrial Rock Deep subsurface Unclassified deep subsurface rock 17.299167 73.738611 9323941 15430 7 1 10 13 0.0 Metagenome 3300049235 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB11 DOE Joint Genome Institute (JGI) 3300049235 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 244651759 627049 424 9 911 11 Unrestricted 28.99 Metagenome 3300007359 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 763860675 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007359 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 15969735 24545 15 5 26 3 SRX024109 0.0 Metagenome 3300048840 *Microbiome Permanent Draft Marine and freshwater sediment microbial communities from various locations Marine sediment microbial communities from Caspian Sea - Caspian_Core_1_0-4_cm DOE Joint Genome Institute (JGI) 3300048840 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes smtechtm@mtu.edu Stephen Techtmann No Environmental Aquatic Sediment Marine Unclassified Marine sediment 39.7455 50.4806 638625460 1582651 551 2 927 7 Unrestricted 7.06 Metagenome 3300056813 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - APS4_18W_T0 DOE Joint Genome Institute (JGI) 3300056813 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 2356572753 3078589 576 161 722 240 Unrestricted 21.91 Metagenome 3300044489 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Towuti Lake, South Sulawesi, Indonesia - Towuti_160m_2014 DOE Joint Genome Institute (JGI) 3300044489 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.7 121.4 793119892 1390281 558 5 872 5 Unrestricted 11.15 Metagenome 7000000392 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158802708 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000392 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 53639394 92913 0 0 0 0 0.0 Metagenome 3300003361 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A5-11 DOE Joint Genome Institute (JGI) 3300003361 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 444141 1519 17 0 59 0 SRX2576242 Unrestricted 0.0 Metagenome 3300026529 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_12_30cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026529 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 613306797 1118275 508 6 919 17 SRX2728260 Unrestricted 0.0 Metagenome 3300012111 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #186 DOE Joint Genome Institute (JGI) 3300012111 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 82492691 157735 78 1 139 4 SRX3296259 Unrestricted 0.0 Metagenome 3300020164 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L304-6m DOE Joint Genome Institute (JGI) 3300020164 Metagenome Analysis spades v. 3.10.1 Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.659 -93.748 602963221 1204747 517 16 817 29 SRX3984342 Unrestricted 22.73 Metagenome 3300050476 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - E14NW0 DOE Joint Genome Institute (JGI) 3300050476 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 102858393 191689 196 58 337 83 Unrestricted 19.96 Metagenome 3300060885 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Chase Lake Wetlands, North Dakota, USA - WOOD_004-M-20210714-comp-1 DOE Joint Genome Institute (JGI) 3300060885 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 47.12584 -99.253801 3352712117 5468796 921 34 1393 51 Unrestricted 17.16 Metagenome 3300022680 *Microbiome Permanent Draft Carpinteria Salt Marsh Metagenomes 2014 to 2017 Sediment microbial communities from marsh channel in Carpinteria, CA, United States - LS B University of California, Irvine 3300022680 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Aquatic Intertidal zone Marine Sediment Sediment 34.401 -119.534 124015172 138064 33 4 36 4 0.0 Metagenome 3300038383 *Microbiome Draft FORHOT Natural soil warming experiment in Iceland Soil microbial communities from grassland in Hveragerdi, Iceland - GO1-E Biomedical Sequencing Facility, Vienna Austria 3300038383 Metagenome Analysis spades v. 3.13.1 released by JGI data releasing policy Yes Yes craig.herbold@microbial-ecology.net Craig Herbold No Environmental Terrestrial Unclassified Soil Grasslands Soil 64.025 -21.205 921484369 1219034 193 7 241 11 0.0 Metagenome 3300025892 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025892 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de; agrieb@mpi-bremen.de Hanno Teeling; Anissa Grieb No Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Pelagic marine 54.184167 7.9 1006344448 1911504 425 126 744 171 SRX803008 Unrestricted 0.0 Metagenome 3300012303 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100555 University of Pennsylvania 3300012303 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8014880 19880 32 8 67 14 SRX756199 0.0 Metagenome 3300015242 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly) DOE Joint Genome Institute (JGI) 3300015242 Metagenome Analysis SPAdes v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 3175370239 7969596 729 156 1581 253 SRX3049020, SRX3049012, SRX3049013, SRX3049014, SRX3049015, SRX3049016, SRX3049017, SRX3049018, SRX3049019 Unrestricted 0.0 Metagenome 3300005850 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - site 1 bottle C1 (SPADES assembly) (version 2) DOE Joint Genome Institute (JGI) 3300005850 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, blumerschuette@oakland.edu; rmkelly@ncsu.edu Natasha Ivanova, Sara Blumer-Schuette; Robert Kelly No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6102 -110.4387 9205925 13035 14 2 11 7 SRX2554540 Unrestricted 0.0 Metagenome 3300032805 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2 DOE Joint Genome Institute (JGI) 3300032805 Metagenome Analysis spades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified soil 26.5065 -80.2537 5047424943 9749626 1659 79 2614 139 SRX5667163 Unrestricted 10.6 Metagenome 3300022894 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L049-202B-5 DOE Joint Genome Institute (JGI) 3300022894 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 545399303 1211454 523 102 939 157 SRX4801149 Unrestricted 8.83 Metagenome 3300021509 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-1--2_MG DOE Joint Genome Institute (JGI) 3300021509 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.0114 -110.5931 295641287 602278 254 2 391 2 SRX3982095 Unrestricted 26.96 Metagenome 3300001043 *Microbiome Permanent Draft Marine cyanobacterial communities from Panama, similar to Oscillatoria species Marine cyanobacterial communities from Panama - species 1 Leptolyngbya sp. v4 (version 2) DOE Joint Genome Institute (JGI) 3300001043 Metagenome Analysis released based on JGI ITS Yes Yes lgerwick@ucsd.edu Lena Gerwick No Environmental Aquatic Unclassified Marine Unclassified Marine 9.28 -79.97 34065382 103489 24 0 56 2 SRX8048359, SRX8048358 Unrestricted 0.0 Metagenome 3300012244 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00644 Weill Cornell Medical College 3300012244 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.79 -73.96 25196722 40132 10 0 11 3 SRX822611 0.0 Metagenome 3300002127 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Cubitermes ugandensis P3 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P3 DOE Joint Genome Institute (JGI) 3300002127 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes brune@mpi-marburg.mpg.de Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 0.2917 34.856 1121610311 3109358 930 32 1650 61 SRX3315489, SRX3315490 Unrestricted 0.0 Metagenome 3300029634 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 008_6_9_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029634 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 97874139 117314 65 1 104 0 0.0 Metagenome 3300023039 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung A0 DOE Joint Genome Institute (JGI) 3300023039 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Elk feces 38.04 -122.5 77634973 184042 324 0 614 1 SRX4415369 Unrestricted 8.15 Metagenome 3300070234 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_006-M-20140314-COMP-DNA1 3300070234 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 1221166 4292 33 5 50 6 0.0 Metagenome 3300026830 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 33 (SPAdes) DOE Joint Genome Institute (JGI) 3300026830 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 30191409 76537 43 0 87 0 SRX4340709 Unrestricted 0.0 Metagenome 3300035563 *Microbiome Permanent Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-06-1_at_2-3_cm Genome Quebec 3300035563 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89673 -73.73461 569457601 1483536 717 22 1513 38 0.0 Metagenome 3300012422 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100214 University of Pennsylvania 3300012422 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3250126 9276 11 0 16 0 SRX756685 0.0 Metagenome 3300027733 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027733 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 48.2311 -71.2508 686732854 1373517 354 19 604 51 SRX2996491 Unrestricted 0.0 Metagenome 3300013026 *Microbiome Permanent Draft Gypsum rock endolithic and hypoendolithic microbial communities Gypsum rock hypoendolithic microbial communities from the Atacama Desert, Chile - Cordon de Lila Johns Hopkins Bayview Research CORES 3300013026 Metagenome Analysis metaSPAdes released by JGI data releasing policy Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock -23.53976 -68.68737 374524122 1053593 206 0 369 7 0.0 Metagenome 3300047547 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Virginia, United States - poseycreek_2019_sw_WHONDRS-S19S_0013 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047547 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.8944 -78.1474 71501206 141748 214 35 406 44 Unrestricted 0.0 Metagenome 3300049729 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvC-P(2) 20-24 DOE Joint Genome Institute (JGI) 3300049729 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.355 19.0438 555131547 782132 194 2 252 5 Restricted 22.11 Metagenome 3300044467 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_181 DOE Joint Genome Institute (JGI) 3300044467 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 706009951 1557025 434 8 774 12 Unrestricted 8.24 Metagenome 3300001963 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Nags Head, North Carolina, USA - GS013 J. Craig Venter Institute (JCVI) 3300001963 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine 35.6 -75.82 98893834 189765 77 2 147 7 0.0 Metagenome 3300043511 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-372 Genome Quebec 3300043511 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 53.682958 -116.270249 1088226498 2559323 513 147 879 301 0.0 Metagenome 3300016709 *Microbiome Permanent Draft Viral community in wastewater in Singapore Activated sludge viral communities from WWT plant in Singapore - Sludge_Nov16 Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016709 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Engineered Wastewater Unclassified Activated Sludge Unclassified wastewater 1.35 103.74 22407878 28796 43 3 625 5 0.0 Metagenome 3300026271 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026271 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Permafrost Soil 68.6137 -149.3144 275823274 647329 203 2 371 4 SRX2739471 Unrestricted 0.0 Metagenome 3300011235 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00394 Weill Cornell Medical College 3300011235 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.68 -73.97 45187518 78128 29 0 35 0 SRX822365 0.0 Metagenome 7000000394 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765620695 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000394 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 109490424 185853 0 0 0 0 0.0 Metagenome 3300047368 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_140625.NP2 DOE Joint Genome Institute (JGI) 3300047368 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 568005154 1162914 361 79 556 160 Unrestricted 11.35 Metagenome 3300009170 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015 DOE Joint Genome Institute (JGI) 3300009170 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wilkins.231@osu.edu, mike.wilkins@colostate.edu Michael Wilkins No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0956 -99.1001 1079711854 2183774 849 71 1569 115 SRX2753777 Unrestricted 0.0 Metagenome 3300028980 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 244_B Beijing Genomics Institute (BGI) 3300028980 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 30224549 34015 15 0 31 0 ERX491025 0.0 Metagenome 3300047315 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere DOE Joint Genome Institute (JGI) 3300047315 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1209 -123.2697 980110796 1622812 316 71 502 93 Unrestricted 13.27 Metagenome 3300024353 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from Anholt, Denmark to uncover new lineages of life (NeLLi) - Anholt_01485 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300024353 Metagenome Analysis spades v. 3.11.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Oceanic Marine Sediment Deep subsurface 56.62 11.67 706874983 1233515 443 6 615 11 SRX3203408 Unrestricted 0.0 Metagenome 3300025680 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025680 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 434115603 877836 266 74 436 105 SRX2999543 Unrestricted 0.0 Metagenome 3300034021 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Oct2014-rr0057 DOE Joint Genome Institute (JGI) 3300034021 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1358619516 2590145 681 131 1067 226 SRX7621969 Unrestricted 11.48 Metagenome 3300004225 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 112_LOW13 DOE Joint Genome Institute (JGI) 3300004225 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 64820787 129169 41 0 82 0 SRX2721191 Unrestricted 0.0 Metagenome 3300007803 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763435843 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007803 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 115796215 159534 69 0 70 0 0.0 Metagenome 3300033390 *Microbiome Permanent Draft Metagenomic SGS 2x251 Riparian soil bacterial communities from Cottonwood Creek Park, Encinitas, CA, USA - R7 Illumina 3300033390 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Riparian soil Soil 33.051604 -117.289363 240300891 887827 141 14 364 27 0.0 Metagenome 3300020162 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erken, Sweden Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1 SciLifeLab 3300020162 Metagenome Analysis megahit v. 1.0.3 released per PI No Yes rhiannon.mondav@gmail.com Rhiannon Mondav No Environmental Aquatic Lake Freshwater Unclassified Freshwater 59.83763399 18.6203826 1036624669 2034542 586 279 905 490 0.0 Metagenome 3300015303 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_31MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015303 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 151923637 277660 7 28 20 26 SRX3922898 Unrestricted 10.57 Metagenome 3300022892 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S169-409R-5 DOE Joint Genome Institute (JGI) 3300022892 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 154852688 434080 410 23 771 32 SRX4799431 Unrestricted 7.31 Metagenome 3300012242 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00959 Weill Cornell Medical College 3300012242 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.92 20852834 39110 12 0 14 0 SRX822921 0.0 Metagenome 3300029632 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - SMB3 Michigan State University 3300029632 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 34.536667 122.141667 15842918 39062 137 4 389 48 0.0 Metagenome 3300002850 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZCTH 0002 University of Sao Paulo, Virginia Bioinformatics Institute 3300002850 Metagenome Analysis SoapDeNovo released per JGI data release policy No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal No Engineered Lab enrichment Aerobic media Defined media Unclassified Compost -23.651072 -46.620675 26905737 51349 0 0 1 0 0.0 Metagenome 3300025894 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic Microbial community sample from North Sea - COGITO 998_met_09 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025894 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Pelagic marine 54.184167 7.9 1047651271 2163985 611 170 1205 229 SRX802074 Unrestricted 0.0 Metagenome 3300021971 *Microbiome Permanent Draft Metagenomes from anaerobic digester of solid waste Food waste and fibre mixture microbial community, University of Toronto, Ontario, Canada - LBfeed2 spades University of Toronto 3300021971 Metagenome Analysis SPAdes-3.10.1 Yes Yes elizabeth.edwards@utoronto.ca; camillaln@gmail.com Elizabeth A. Edwards; Camilla Nesb? No Engineered Solid waste Unclassified Household waste Unclassified food waste 43.6629 -79.3957 2002048287 4810921 532 73 849 216 SRX4965140, SRX4986165 0.0 Metagenome 3300020480 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 16JUL2010 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020480 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 29757192 68146 38 10 68 22 SRX3310670 Unrestricted 0.0 Metagenome 3300007966 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763536994 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007966 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 143607971 187645 126 0 150 0 0.0 Metagenome 3300001720 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-36 DOE Joint Genome Institute (JGI) 3300001720 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 50.0 -145.0 76030706 191056 27 1 43 3 Unrestricted 0.0 Metagenome 3300012424 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100701 University of Pennsylvania 3300012424 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3768835 9533 9 0 10 4 SRX756149 0.0 Metagenome 3300014730 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01175 Weill Cornell Medical College 3300014730 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.69 -73.86 21775435 37469 12 0 22 1 SRX823130 0.0 Metagenome 3300012859 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - DID2934_E24 MG DOE Joint Genome Institute (JGI) 3300012859 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie Yes 29545786 Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 135709802 199758 140 2 196 4 SRX3566177 Unrestricted 0.0 Metagenome 3300070232 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_007-O-20190620-COMP-DNA1 3300070232 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 167795117 404126 100 26 213 51 0.0 Metagenome 3300007046 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge C. singaporensis associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - co52is University of New South Wales 3300007046 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au, e.botte@aims.gov.au; n.webster@aims.gov.au Nicole Webster, Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Coelocarteria singaporensis (marine sponge) -9.8241 150.825833 58988803 136654 50 2 92 6 0.0 Metagenome 3300011729 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01009 Weill Cornell Medical College 3300011729 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.58 -73.83 36416948 52203 18 0 23 0 SRX822971 0.0 Metagenome 3300043324 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-353 Genome Quebec 3300043324 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.667268 -110.29574 1361071808 2945225 553 127 878 216 0.0 Metagenome 3300060375 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210616_20_21 DOE Joint Genome Institute (JGI) 3300060375 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 465246917 665415 239 104 293 147 Unrestricted 42.32 Metagenome 3300043751 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - FDOC_A100 DOE Joint Genome Institute (JGI) 3300043751 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.1424 -62.8821 579420342 1618737 405 2 723 8 Unrestricted 8.14 Metagenome 3300043063 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - HN_050217 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043063 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.9002 -89.3556 12354607 31297 53 7 88 14 SRX9381674 Unrestricted 57.15 Metagenome 3300008249 *Microbiome Permanent Draft Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico and Hudson Canyon, USA Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN10B Hudson Canyon DOE Joint Genome Institute (JGI) 3300008249 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mcredmond@uncc.edu Molly C. Redmond No Environmental Aquatic Cold seeps Marine Unclassified Methane seep mesocosm 39.54 -72.4 299018397 552694 1318 1 2364 1 SRX2754429 Unrestricted 0.0 Metagenome 3300019835 *Microbiome Permanent Draft Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil - Edson_C2 Center for Advanced Technologies in Genomics, Sao Paulo University 3300019835 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 23986025 48443 53 0 79 0 0.0 Metagenome 3300069301 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Caribou Creek Watershed, Alaska, USA - BONA_001-O-20210708-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069301 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Terrestrial soil 65.174447 -147.478155 3440548901 7717678 1303 365 2277 584 0.0 Metagenome 3300044771 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_129 DOE Joint Genome Institute (JGI) 3300044771 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 465697133 1056097 491 12 875 9 Unrestricted 7.36 Metagenome 3300044936 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_6_C DOE Joint Genome Institute (JGI) 3300044936 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 209525941 237445 115 1 134 2 Unrestricted 100.47 Metagenome 3300033126 *Microbiome Permanent Draft Microbial communities from various environments in Magnetic Island Reef, Townsville, Australia Macroalgae surface microbial communities from Magnetic Island Reef, Townsville, Australia - 36426 AGRF 3300033126 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes b.glasl@aims.gov.au Bettina Glasl No Host-associated Algae Unclassified Brown Algae Unclassified Macroalgae surface -19.1531 146.8641 958299821 2344574 602 69 930 170 0.0 Metagenome 3300056791 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 S1 20-24 (re-filtered) (version 2) DOE Joint Genome Institute (JGI) 3300056791 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3532867 19.0474583 496292190 501709 84 0 92 0 Restricted 14.5 Metagenome 3300039333 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 195_12M Beijing Genomics Institute (BGI) 3300039333 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 101618577 130400 56 0 100 0 ERX490989 0.0 Metagenome 3300050195 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D10_SEK1_5_to_SEK1 DOE Joint Genome Institute (JGI) 3300050195 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.244 606655583 1029407 364 120 583 187 Unrestricted 22.02 Metagenome 3300028890 *Microbiome Permanent Draft Antarctic Nanohaloarchaea Enriched hypersaline water microbial communities from Club Lake, Antarctica - Nha-CHl re-analysis Garvan Institute of Medical Research 3300028890 Metagenome Analysis MiniASM v. 0.2-r168-dirty, MiniMAP v. 2.9, Racon v. 1.2.0 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 31253704 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline water -68.5417 78.2467 26088199 39867 23 0 22 0 0.0 Metagenome 3300069599 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Soaproot Saddle, Pacific Southwest, CA, USA - SOAP_043-M-20180531-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069599 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.03337 -119.26219 21281647 66655 83 6 181 15 0.0 Metagenome 3300031216 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #1060 DOE Joint Genome Institute (JGI) 3300031216 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.457 78.1911 254994387 552501 151 34 254 62 SRX5649545 Unrestricted 47.34 Metagenome 3300045259 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_6_A DOE Joint Genome Institute (JGI) 3300045259 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 183796059 221012 114 1 131 1 Unrestricted 74.62 Metagenome 3300002268 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP09-MB 3300002268 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300054112 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FL_01 DOE Joint Genome Institute (JGI) 3300054112 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.407926 -82.180036 76045100 124036 4 3 7 4 Restricted 260.23 Metagenome 3300009525 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG DOE Joint Genome Institute (JGI) 3300009525 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes loy@microbial-ecology.net; Michael.Pester@dsmz.de Alexander Loy; Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.1318 11.881 804144766 1585856 254 2 404 7 Unrestricted 0.0 Metagenome 2199352007 *Microbiome Permanent Draft Marine sediment microbial communities from Little Sippewissett, Falmouth, MA, that are multicellular and magnetotactic - full plate MMB Pennsylvania State University 2199352007 Metagenome Analysis CAMERA released per JGI data release policy No Yes esthersi@usc.edu Esther Singer No Environmental Aquatic Intertidal zone Marine Sediment environment 39.0042816 -77.1012173 8 4908717 12218 0 0 0 0 0.0 Metagenome 3300003653 *Microbiome Permanent Draft Subglacial freshwater microbial communities from Lake Whillans, Antarctica Subglacial freshwater microbial communities from Lake Whillans, Antarctica - 0.2 micron filter 3300003653 Metagenome Analysis released by JGI data releasing policy No Yes xner@lsu.edu Brent Christner No Environmental Aquatic Subglacial lake Deep subsurface Unclassified Subglacial freshwater -84.24 -153.694 17307177 25867 10 0 19 0 0.0 Metagenome 2124908032 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from Bonanza Creek, Alaska, USA - Perma_all DOE Joint Genome Institute (JGI) 2124908032 Metagenome Analysis Velvet released per Tijana's request (7/1/15) No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 253948605 440346 53 2 130 0 0.0 Metagenome 3300027597 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepB_8d DOE Joint Genome Institute (JGI) 3300027597 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 196152979 356814 161 19 239 21 SRX5245195 Unrestricted 15.94 Metagenome 3300036916 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10WP15 DOE Joint Genome Institute (JGI) 3300036916 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 447615636 1100705 401 12 690 10 SRX8379130 Unrestricted 5.68 Metagenome 3300055503 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.1C.7 SIP fraction DOE Joint Genome Institute (JGI) 3300055503 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 152318400 291534 73 0 127 0 Unrestricted 13.78 Metagenome 3300059781 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.689 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059781 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 70004749 163480 97 22 161 44 SRX2753566 Unrestricted 0.0 Metagenome 3300042844 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157 NMDC pilot DOE Joint Genome Institute (JGI) 3300042844 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92057636 -106.94874802 1061474695 2658833 745 23 1351 53 SRX5354716 0.0 Metagenome 3300002215 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY88 J. Craig Venter Institute (JCVI) 3300002215 Metagenome Analysis released per JGI data release policy No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 351738748 1084534 73 51 146 75 0.0 Metagenome 3300025984 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_ThreeSqA_D2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025984 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.131752 -122.266335 157135182 342440 226 1 344 0 SRX7146256 Unrestricted 0.0 Metagenome 3300064914 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 727 in Wetaskiwin, Alberta, Canada - S00JY_0057 Microbiome Insights 3300064914 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.53069413 -113.1733318 4521406 7157 10 0 20 0 0.0 Metagenome 3300032011 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416 DOE Joint Genome Institute (JGI) 3300032011 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.7468 -122.0193 2867948884 6385324 1516 335 2437 613 SRX6423003 Unrestricted 12.82 Metagenome 3300013401 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100160 University of Pennsylvania 3300013401 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 2632081 4891 1 5 5 8 SRX756372 0.0 Metagenome 3300029605 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36211 Beijing Genomics Institute (BGI) 3300029605 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 216833249 258427 157 3 225 5 0.0 Metagenome 3300039694 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, Pacific Southwest, CA, USA - SJER_046-M-20170316-COMP-DNA1 Battelle Memorial Institute 3300039694 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.10878 -119.73228 48998548 139829 213 39 374 78 0.0 Metagenome 3300026873 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A5-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026873 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 51091805 135695 175 1 296 4 SRX1991281 Unrestricted 0.0 Metagenome 3300007921 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 160704339 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007921 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 140379868 193584 159 0 214 0 0.0 Metagenome 3300005846 *Microbiome Permanent Draft Biogas reactor microbial communities Biogas reactor microbial communities from As, Norway - PacBio_D1BO_tot_march2015 Genomics Core Facility (Oslo University Hospital and University of Oslo) 3300005846 Metagenome Analysis Mira released per JGI data release policy No Yes phillip.b.pope@gmail.com Phillip Pope, Phil B. Pope No Engineered Bioreactor Biogas Anaerobic Unclassified Biogas reactor 59.6 10.8 6874217 8071 10 0 11 0 0.0 Metagenome 3300070490 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_004-M-20190729-COMP-DNA1 Battelle Memorial Institute 3300070490 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 38.896938 -78.146458 6.37-6.8 24223423 59570 44 4 72 4 0.0 Metagenome 3300070925 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Florida, USA - DSNY_005-M-20160712-COMP-DNA3 3300070925 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 51383806 145784 61 7 111 5 0.0 Metagenome 3300031331 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-150 DOE Joint Genome Institute (JGI) 3300031331 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.759 -70.891 397689442 744646 307 3 457 4 SRX5358433 Unrestricted 19.87 Metagenome 3300027770 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027770 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 45.4091 -72.0994 856076213 1589398 352 25 486 37 SRX2996440 Unrestricted 0.0 Metagenome 3300046337 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_95 DOE Joint Genome Institute (JGI) 3300046337 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9223 -106.9493 354943539 984539 943 30 1821 59 Restricted 0.0 Metagenome 3300020416 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001109 (ERX556137-ERR599039) CEA Genoscope 3300020416 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -1.972 -84.601 1052342825 2708443 424 39 686 80 0.0 Metagenome 3300037793 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0608S20re DOE Joint Genome Institute (JGI) 3300037793 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8959 -97.0388 716294739 1181853 327 4 646 1 SRX9149541 Unrestricted 14.71 Metagenome 3300027094 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF022 (SPAdes) DOE Joint Genome Institute (JGI) 3300027094 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 28631826 84326 43 1 87 2 SRX2014331 Unrestricted 0.0 Metagenome 3300011202 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00079 Weill Cornell Medical College 3300011202 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.59 -73.95 32586910 44980 29 1 43 2 SRX822074 0.0 Metagenome 3300025616 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA6M (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025616 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu; shaomei.he@gmail.com Katherine McMahon; Shaomei He No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 312057396 686058 292 17 494 18 SRX2518384 Unrestricted 0.0 Metagenome 3300005795 *Microbiome Permanent Draft Subglacial freshwater microbial communities from Lake Whillans, Antarctica Subglacial sediment microbial community from Lake Whillans, Antarctica - at 4-6 cm depth Marine Biological Laboratory 3300005795 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes aachberger1216@gmail.com Amanda Achberger No Environmental Aquatic Subglacial lake Deep subsurface Sediment sediment -84.24 -153.694 45162646 61656 20 2 29 2 0.0 Metagenome 3300049343 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CDF1 DOE Joint Genome Institute (JGI) 3300049343 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 382281703 1029031 477 14 907 13 Unrestricted 7.15 Metagenome 3300025471 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Canada - AD_UKC129_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025471 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 49.25 -123.1 281683005 460872 301 2 425 5 SRX2157914 Unrestricted 0.0 Metagenome 3300048856 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD11 DOE Joint Genome Institute (JGI) 3300048856 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.347657 -119.2808 778608787 1108775 141 52 178 63 Unrestricted 38.97 Metagenome 3300049204 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - D5_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049204 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 320785575 722794 378 9 703 9 Unrestricted 0.0 Metagenome 3300017658 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - eDNA 5th pass 30_C BE-Lig MG (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017658 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes JMGladden@lbl.gov John Gladden No Engineered Solid waste Composting Mixed feedstock Commercial compost compost 37.83 -122.29 880230362 1424464 953 44 1252 74 SRX4809032, SRX4809033 Unrestricted 0.0 Metagenome 3300034946 *Microbiome Permanent Draft Marine microbial communities from Baffin Bay, Canada Marine microbial communities from Baffin Bay, Canada - S115_1m Genome Quebec 3300034946 Metagenome Analysis SPades v. 3.12.0 released by JGI data releasing policy Yes Yes thomas.grevesse@gmail.com Thomas Grevesse No Environmental Aquatic Oceanic Marine Photic zone marine 76.20297 -71.11524 751903673 1781728 346 203 562 386 0.0 Metagenome 3300029419 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 076_4_27_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029419 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 198389714 245418 213 0 267 0 0.0 Metagenome 3300025549 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025549 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.04565 -121.866287 169373895 365006 212 0 334 1 SRX7142153 Unrestricted 0.0 Metagenome 3300011922 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00285 Weill Cornell Medical College 3300011922 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.72 -73.99 81951893 118160 33 1 48 0 SRX822258 0.0 Metagenome 3300028347 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Club lake, Antarctica - Metagenome #312 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028347 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5417 78.2467 63587050 98116 33 1 50 1 SRX3241685 Unrestricted 0.0 Metagenome 3300061111 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIIF7SW PMA-treated Jet Propulsion Laboratory, California Institute of Technology 3300061111 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 9852091 10671 6 2 5 3 SRX3244875, SRX3808509, SRX3244864, SRX3808529 0.0 Metagenome 2058419016 *Microbiome Permanent Draft Feline fecal microbial communities from Illinois, USA cat metagenome 6 Research and Testing Laboratory 2058419016 Metagenome Analysis seqman NGEN transcriptome released per JGI data release policy No Yes sdowd@pathogenresearch.org Scot E. Dowd No Host-associated Mammals Large intestine Digestive system Fecal Feline fecal 40.11 -88.4 102455829 297200 173 0 287 0 0.0 Metagenome 3300034066 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087 DOE Joint Genome Institute (JGI) 3300034066 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1587205059 3216824 706 187 1045 298 SRX7622047 Unrestricted 11.38 Metagenome 3300049924 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Pennsylvania, USA - whiteclaycreek1_2019_sed_WHONDRS-S19S_0037 DOE Joint Genome Institute (JGI) 3300049924 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 39.8577967 -75.7830393 376028860 831712 386 23 709 39 Restricted 10.23 Metagenome 3300046459 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere DOE Joint Genome Institute (JGI) 3300046459 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1207 -123.2716 1312142455 2109079 367 88 563 118 Unrestricted 13.67 Metagenome 3300046824 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 soil DOE Joint Genome Institute (JGI) 3300046824 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121622 -123.271675 5.68 669026125 1162385 282 9 478 23 Unrestricted 14.16 Metagenome 3300042113 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lake Yojoa, Honduras - Yojoa_06_2019_L_epi (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300042113 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Lake Freshwater Unclassified Freshwater 14.8869 -88.0258 1038264937 1986646 477 75 772 136 Unrestricted 20.39 Metagenome 3300008075 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765620695 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008075 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 90520709 136243 71 0 95 0 0.0 Metagenome 3300036980 *Microbiome Permanent Draft Sediment microbial communities from various lakes in Switzerland Sediment microbial communities from Lake Greifen, Zurich, Switzerland - LG_38 DOE Joint Genome Institute (JGI) 3300036980 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mark.lever@usys.ethz.ch Mark Alexander Lever No Environmental Aquatic Lake Freshwater Sediment sediment 47.3519 8.6747 817023837 1311248 332 0 502 0 SRX8398747 Unrestricted 13.75 Metagenome 3300022767 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA14 Version 2 University of New South Wales 3300022767 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 42441720 68712 28 0 42 1 0.0 Metagenome 3300032327 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada - Lake 17-050 Genome Quebec 3300032327 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.204665 -66.179286 589185557 1152174 396 151 540 273 0.0 Metagenome 2014642002 *Microbiome Permanent Draft Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) - 5_Below_upper_mesopelagic_500m DOE Joint Genome Institute (JGI) 2014642002 Metagenome Analysis No Yes delong@mit.edu Edward DeLong Yes 16439655 Environmental Aquatic Oceanic Marine Aphotic zone Marine 22.45 -158.0 8764642 13784 0 0 0 0 0.0 Metagenome 3300013808 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - seawater enrichment SCG64 University of British Columbia 3300013808 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 2584495 5053 2 0 5 0 SRX143173 0.0 Metagenome 3300044504 *Microbiome Permanent Draft Sediment microbial communities from various environments and locations in Europe Sediment microbial communities from Baltic Sea, Sweden - H3D5S (IMG v5.0) DOE Joint Genome Institute (JGI) 3300044504 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes o.eyice@qmul.ac.uk Ozge Eyice No Environmental Aquatic Sediment Marine Unclassified Sediment 58.8444 17.795 591885262 1312637 519 8 884 11 Unrestricted 8.05 Metagenome 3300034785 *Microbiome Permanent Draft Sediment microbiome project Sediment microbial communities from wetland pond in Xixi Nat. Park in Hangzhou, Zhejiang, China - 5 Beijing Genomics Institute (BGI) 3300034785 Metagenome Analysis megahit v. 1.1.3 released by JGI data releasing policy No Yes 17826834892@163.com wang binhao No Environmental Aquatic Pond Freshwater Sediment sediment 30.268 120.04 106358843 147195 69 2 100 1 0.0 Metagenome 7000000378 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 159551223 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000378 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 1495039 3659 0 0 0 0 SRX023254, SRX023255 0.0 Metagenome 3300006008 *Microbiome Permanent Draft Rhizosphere and bulk soil microbial communities from Harvard Forest, USA Bulk soil microbial communities from Harvard Forest, USA - 2Bulk_NRpos metaG DOE Joint Genome Institute (JGI) 3300006008 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes deangelis@microbio.umass.edu Kristen M DeAngelis PhD, Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Bulk soil bulk soil 42.5502 -72.1737 4670180 19507 28 10 44 18 Unrestricted 0.0 Metagenome 7000000633 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000633 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 187617216 279717 0 0 0 0 0.0 Metagenome 3300031280 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-240 DOE Joint Genome Institute (JGI) 3300031280 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.759 -70.891 407986630 848897 286 1 432 4 SRX5358346 Unrestricted 17.32 Metagenome 3300001028 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN336 DOE Joint Genome Institute (JGI) 3300001028 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 158248 522 15 2 17 3 SRX1986452 Unrestricted 0.0 Metagenome 3300039990 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Ozarks Complex, AL, USA - LENO_062-M-20160830-COMP-DNA1 Battelle Memorial Institute 3300039990 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.85388 -88.16122 17597247 53032 86 5 137 6 0.0 Metagenome 3300037159 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 P3 20-24 DOE Joint Genome Institute (JGI) 3300037159 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3535 19.0473 714610355 1337048 233 10 429 23 SRX8145071 Unrestricted 8.15 Metagenome 3300021484 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-3-4_MG DOE Joint Genome Institute (JGI) 3300021484 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.0114 -110.5956 106167820 214538 120 3 221 6 SRX3982299 Unrestricted 11.07 Metagenome 3300033161 *Microbiome Permanent Draft Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_09_05-R3 DOE Joint Genome Institute (JGI) 3300033161 Metagenome Analysis spades v. 3.13.0 Yes Yes ziels@mail.ubc.ca Ryan Ziels No Engineered Bioreactor Unclassified Anaerobic Unclassified sludge 51.9691 5.6654 323201248 505547 353 1 443 2 SRX7542614 Unrestricted 64.03 Metagenome 3300042301 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME29Jun2006D9-rr0454 DOE Joint Genome Institute (JGI) 3300042301 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 903989277 1465880 295 35 382 48 Unrestricted 20.44 Metagenome 3300000724 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 29 DOE Joint Genome Institute (JGI) 3300000724 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 16827352 53197 40 0 84 0 SRX4340707 Unrestricted 0.0 Metagenome 3300025878 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025878 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.299 -156.61 817480300 1928055 509 19 1007 31 SRX2899913 Unrestricted 0.0 Metagenome 3300000351 *Microbiome Draft Alkaline sediment microbial communities from Soda lakes and Soda Solonchak soils Alkaline sediment microbial communities from bioreactor in Germany - Reactor TP_S2 DOE Joint Genome Institute (JGI) 3300000351 Metagenome Analysis released based on JGI ITS Yes Yes g.muijzer@uva.nl Gerard Muyzer No Environmental Aquatic Alkaline Non-marine Saline and Alkaline Sediment Alkaline sediment 53.109 8.845 45604573 70546 40 3 66 3 Unrestricted 0.0 Metagenome 3300045677 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-466 Genome Quebec 3300045677 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.215541 -122.490763 1065859560 2278328 473 122 742 217 0.0 Metagenome 3300014038 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S27-04-R University of California, Los Angeles 3300014038 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 229410027 379759 168 0 259 0 SRX870388 0.0 Metagenome 3300041804 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - TR_37_wk_3 DOE Joint Genome Institute (JGI) 3300041804 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9999 -107.084 138062261 390745 203 8 394 13 SRX14808398 Unrestricted 5.76 Metagenome 3300029973 *Microbiome Permanent Draft Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil - Edson_C2 Reanalysis Center for Advanced Technologies in Genomics, Sao Paulo University 3300029973 Metagenome Analysis metaSPAdes v. 3.12.0 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 27006068 53315 61 2 85 3 0.0 Metagenome 3300042599 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Hodotermes mossambicus from Pretoria, South Africa - Hm464 Eurofins MWG Operon 3300042599 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut -25.753482 28.237741 1332732946 1349900 359 43 445 54 0.0 Metagenome 3300022789 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY4 Version 2 University of New South Wales 3300022789 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 31227670 48572 18 1 26 3 0.0 Metagenome 3300030446 *Microbiome Permanent Draft Synthetic microbial community for library methods comparison from University of Liverpool, United Kingdom Synthetic microbial communities for library methods comparison from University of Liverpool, United Kingdom - Mg63 University of Liverpool 3300030446 Metagenome Analysis Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 53.405936 -2.9677609 173589176 183465 83 0 82 0 ERX1325917 0.0 Metagenome 3300041556 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_315 MetaG AgResearch, New Zealand, Mosgeil 3300041556 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1782233699 3685146 375 29 1266 41 0.0 Metagenome 3300069455 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_007-M-20170612-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069455 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 16639470 52803 60 7 114 14 0.0 Metagenome 3300056869 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - APS4_16W_T0 DOE Joint Genome Institute (JGI) 3300056869 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 2666649907 3444516 585 151 791 212 Unrestricted 21.45 Metagenome 3300027908 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027908 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 3041230817 6730306 1145 199 1938 362 SRX1987237 Unrestricted 0.0 Metagenome 3300000432 *Microbiome Draft Soil microbial communities from Kansas Great Prairie, USA, amended with BrdU Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1RNA lane3 clc assembly DOE Joint Genome Institute (JGI) 3300000432 Metagenome Analysis Clc-workbench released by JGI data releasing policy No Yes maude.david@yahoo.fr Maude David No Environmental Terrestrial Loam Soil Grasslands Soil 39.100992 -96.608258 8977343 62923 40 5 83 2 0.0 Metagenome 3300035193 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0819M02 DOE Joint Genome Institute (JGI) 3300035193 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0387 1092276604 2424962 768 7 1339 10 SRX8271400 Unrestricted 6.55 Metagenome 3300009680 *Microbiome Permanent Draft Anaerobic biogas reactor microbial communites from Washington, USA Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2 time_0 SIP DNA DOE Joint Genome Institute (JGI) 3300009680 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes dacb@uw.edu David Beck Yes 28895946 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic biogas reactor 47.6525 -122.3049 1063276840 1677455 1339 3 1917 4 SRX2339322 Unrestricted 0.0 Metagenome 3300071023 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_004-O-20180717-COMP-DNA1 3300071023 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 21518172 63326 44 15 85 24 0.0 Metagenome 3300027228 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1550A-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027228 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2328 -123.878 103202643 234732 200 89 267 133 SRX2753720 Unrestricted 0.0 Metagenome 3300006884 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Final time point T34 (1) (live) benzoate enrichments of Methanogenic microbial communities using Athabasca oil sands as inoculum Shell Corporation 3300006884 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 46032848 74770 28 0 52 0 0.0 Metagenome 3300025170 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - JTO22cm metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025170 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; wswingley@niu.edu Ramunas Stepanauskas; Wesley Swingley No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 41.6655 -87.5437 13-14 104807534 279480 214 20 357 43 SRX3008004 Unrestricted 0.0 Metagenome 3300026652 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1117 (SPAdes) DOE Joint Genome Institute (JGI) 3300026652 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 4944441 14266 33 6 53 6 SRX1987162 Unrestricted 0.0 Metagenome 3300030505 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - Mg.Ma.e (v2) (version 2) DOE Joint Genome Institute (JGI) 3300030505 Metagenome Analysis spades v. 3.12.0 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.7658 -100.163 653701676 1186283 116 138 228 237 SRX2124747 Unrestricted 0.0 Metagenome 3300038317 *Microbiome Permanent Draft Liquor fermentation pit mud microbial communities from Chongqing University, China Liquor fermentation pit mud microbial communities from Luzhou, China - Meta-6-1-50-B Chongqing University 3300038317 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Bioreactor Unclassified Unclassified Unclassified Fermentation pit mud 28.88 105.45 213846643 319976 161 0 268 0 SRX691278 0.0 Metagenome 3300011910 *Microbiome Permanent Draft Wastewater microbial communities from municipal sewage treatment plants in Nanjing, China Wastewater microbial communities from municipal sewage treatment plant in Nanjing, China - JXZ_IW_meta Nanjing University 3300011910 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 41928486 96189 65 2 149 6 SRX425444 0.0 Metagenome 3300020594 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - eDNA 3rd pass 30_C BE-Lig MG (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300020594 Metagenome Analysis spades v. 3.10.1 Yes Yes JMGladden@lbl.gov John Gladden No Engineered Solid waste Composting Mixed feedstock Commercial compost compost 37.83 -122.29 409576163 697680 244 14 372 27 SRX4062852, SRX4062851 Unrestricted 0.0 Metagenome 3300044856 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_CSTR_012 DOE Joint Genome Institute (JGI) 3300044856 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 425682751 777505 608 2 820 4 SRX12654482 Unrestricted 22.78 Metagenome 3300003109 *Microbiome Permanent Draft Premature human infant gut microbial communities from University of California, Berkeley, USA Premature human infant gut microbial communities from University of California, Berkeley, USA University of California, Berkeley 3300003109 Metagenome Analysis Newbler v. 2.0.01 Made public because these are downloaded from Genbank No Yes ipagani@lbl.gov Banfield,J.F., Ionna Pagani Yes 21191099 Host-associated Mammals: Human Large intestine Digestive system Fecal Premature human infant gut 37.8737 -122.25 13608872 15151 13 0 10 0 0.0 Metagenome 3300045500 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Cordillera ecozone, Canada - Lake 13-564 Genome Quebec 3300045500 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 61.455898 -130.240718 900019793 2106576 428 147 635 260 0.0 Metagenome 3300048123 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_130529.NP1 DOE Joint Genome Institute (JGI) 3300048123 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 789677385 1714007 497 92 802 166 Unrestricted 13.52 Metagenome 3300035358 *Microbiome Permanent Draft Cathode biofilm microbial communities from solar microbial fuel cell (MFC) in Washington, DC, USA Cathode biofilm microbial communities from solar microbial fuel cell (MFC) in Washington, DC, USA - Sample 5 Naval Research Laboratory 3300035358 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Industrial production Unclassified Engineered product Unclassified Cathode biofilm 38.823126 -77.017947 48916112 61499 19 0 23 0 0.0 Metagenome 3300035646 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS61_24 University of Hohenheim 3300035646 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 75297504 116834 93 0 164 0 0.0 Metagenome 3300056887 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F2P_50_52 DOE Joint Genome Institute (JGI) 3300056887 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.97683846 -81.7074257 1389589490 2006886 593 3 907 2 Unrestricted 19.04 Metagenome 3300001919 *Microbiome Permanent Draft Asian elephant fecal microbial communities from Hamburg Zoo, Germany Elephant fecal microbiome from Asian Elephant baby in Hamburg Zoo, Germany 3300001919 Metagenome Analysis released per submitter No Yes g2l.info@gwdg.de Anja Poehlein, G2L Team Yes 25208077 Host-associated Mammals Large intestine Digestive system Fecal Asian elephant fecal 53.595256 9.941572 138494152 173380 102 1 193 3 0.0 Metagenome 3300013100 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG DOE Joint Genome Institute (JGI) 3300013100 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil corn rhizosphere 42.3948 -85.3738 2437247665 5275936 3253 246 4813 395 SRX3900121 Unrestricted 13.18 Metagenome 3300024916 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 63_LOW9 (SPAdes) DOE Joint Genome Institute (JGI) 3300024916 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 44959511 63680 25 0 30 0 SRX2720761 Unrestricted 0.0 Metagenome 3300024347 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction) DOE Joint Genome Institute (JGI) 3300024347 Metagenome Analysis metalrec/blasr v. metalrec version 1.0.2/blasr 1.3.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 1602977385 2290620 225 47 235 73 SRX4365322, SRX4365321, SRX4365320 Unrestricted 0.73 Metagenome 3300009894 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY3 University of New South Wales 3300009894 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 20746486 38655 15 0 25 1 0.0 Metagenome 3300039449 *Microbiome Permanent Draft Seawater microbial communities from the Faroe-Shetland Channel, North-East Atlantic Ocean Seawater microbial communities from the Faroe-Shetland Channel, North-East Atlantic Ocean - 700mSIP-HEX-1 DOE Joint Genome Institute (JGI) 3300039449 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tony.gutierrez@hw.ac.uk Tony Gutierrez No Environmental Aquatic Oceanic Marine Unclassified seawater 60.38 -4.54 90800530 103414 35 0 39 0 SRX9536171 Unrestricted 385.61 Metagenome 3300029127 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019831-39 Beijing Genomics Institute (BGI) 3300029127 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 138084887 171011 114 0 168 0 0.0 Metagenome 3300002634 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A5-11 DOE Joint Genome Institute (JGI) 3300002634 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 644210 2150 42 0 65 1 SRX1991142 Unrestricted 0.0 Metagenome 3300035519 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver small intestine microbial communities from Maple Ridge, British Columbia, Canada - Beaver6Small.Intestine1 DOE Joint Genome Institute (JGI) 3300035519 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Small intestine Digestive system Unclassified small intestine 49.18 -122.54 1536243418 2147854 11 13 36 25 SRX8346483 Unrestricted 5.5 Metagenome 3300011614 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00832 Weill Cornell Medical College 3300011614 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.72 -73.99 28880440 41142 13 0 16 0 SRX822798 0.0 Metagenome 3300006994 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 160421117 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300006994 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 14453137 29985 11 1 17 3 SRX023624, SRX023623 0.0 Metagenome 3300041716 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_131 MetaG AgResearch, New Zealand, Mosgeil 3300041716 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1324895860 2573049 242 18 1056 37 0.0 Metagenome 7000000002 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 809635352 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000002 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 15878867 31718 0 0 0 0 0.0 Metagenome 3300004075 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_ThreeSqB_D1 DOE Joint Genome Institute (JGI) 3300004075 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.131752 -122.266335 826492866 2831666 896 31 2024 45 SRX7146201 Unrestricted 0.0 Metagenome 3300003647 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 day 78 University of Sao Paulo, Virginia Bioinformatics Institute 3300003647 Metagenome Analysis SoapDeNovo released per PI's request No Yes setubal@vbi.vt.edu Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 237413255 604771 7 5 41 12 0.0 Metagenome 3300049612 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MC12 DOE Joint Genome Institute (JGI) 3300049612 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 3861101 10670 26 0 67 0 Unrestricted 41.29 Metagenome 3300022206 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_24 DOE Joint Genome Institute (JGI) 3300022206 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Sediment Marine Unclassified sediment 37.7 -122.34 633408647 1460562 518 82 1007 129 SRX4053572 Unrestricted 8.92 Metagenome 3300012939 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015 Shell Corporation 3300012939 Metagenome Analysis idba_ud released by JGI data releasing policy No Yes nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis No Environmental Terrestrial Ranch Soil Agricultural land soil 52.172047 -113.738964 2772840374 11700059 1278 43 2209 80 0.0 Metagenome 7000000464 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit number 3 of subject 159753524 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000464 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 110017103 160583 0 0 0 0 0.0 Metagenome 3300026021 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_404 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026021 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 111684456 255904 148 2 255 1 SRX2564563, SRX2581034 Unrestricted 0.0 Metagenome 3300070949 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_021-M-20180712-COMP-DNA1 3300070949 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 483294 1689 7 2 13 1 0.0 Metagenome 3300039188 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Oblong Lake, Antarctica - #33 Australian Centre for Ecogenomics 3300039188 Metagenome Analysis Spades v. 3.13.0 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.624133 78.240783 154540015 295357 112 4 207 10 0.0 Metagenome 3300048504 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_110126.NP1 DOE Joint Genome Institute (JGI) 3300048504 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 524510146 1125532 368 43 546 80 Unrestricted 14.83 Metagenome 3300002930 *Microbiome Permanent Draft Estuary water microbial communities from Pearl Estuary, Zhujiang, China Estuary water microbial communities from Pearl Estuary, Zhujiang, China 3300002930 Metagenome Analysis released by JGI data releasing policy No Yes limeng848@gmail.com Guaymas sediment, MENG LI No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 22.67 113.71 7.5 23751073 37718 0 0 0 0 0.0 Metagenome 3300038785 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog31 BILS 3300038785 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 2367879 6268 5 0 6 0 ERX1594853 0.0 Metagenome 3300023264 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L151-409C-6 DOE Joint Genome Institute (JGI) 3300023264 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 306581973 725560 455 87 862 126 SRX4801090 Unrestricted 8.3 Metagenome 3300022926 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG (version 2) DOE Joint Genome Institute (JGI) 3300022926 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 878655273 1591549 381 29 548 44 SRX4081050 Unrestricted 33.7 Metagenome 3300047498 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Western Region, Iceland - Sphagnum teres NH_TE_ICE DOE Joint Genome Institute (JGI) 3300047498 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.5161 -22.1538 1402817268 2511119 656 194 1045 299 SRX14786684 Unrestricted 7.59 Metagenome 3300001473 *Microbiome Permanent Draft Marine cyanobacterial communities from Panama, similar to Oscillatoria species Marine cyanobacterial communities from Panama - species 1 Leptolyngbya sp. v5 (version 5) DOE Joint Genome Institute (JGI) 3300001473 Metagenome Analysis released based on JGI ITS Yes Yes lgerwick@ucsd.edu Lena Gerwick No Environmental Aquatic Unclassified Marine Unclassified Marine 9.28 -79.97 366935825 373066 99 6 106 6 SRX8048359, SRX8048358 Unrestricted 0.0 Metagenome 3300044977 *Microbiome Permanent Draft Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA - SWaN 13 years plot 19 DOE Joint Genome Institute (JGI) 3300044977 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes luizdomeignoz@gmail.com Luiz Domeignoz Horta No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 42.303 -72.1228 1878085615 2986360 321 44 516 82 SRX15792981 Unrestricted 14.8 Metagenome 3300056997 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M1P_60_62 DOE Joint Genome Institute (JGI) 3300056997 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0045281 -81.5645485 1136719844 1751259 555 4 879 0 Unrestricted 17.2 Metagenome 3300056601 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.5C.12 SIP fraction DOE Joint Genome Institute (JGI) 3300056601 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 215338256 369362 141 16 231 21 Unrestricted 17.24 Metagenome 3300053644 *Microbiome Permanent Draft Soil microbial communities from various environments and locations in the USA Soil microbial communities from grassland in Ellensburg, Washington, USA - 1000S_WSU1_TOP_Q DOE Joint Genome Institute (JGI) 3300053644 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nancy.hess@pnnl.gov Nancy Hess No Environmental Terrestrial Grasslands Soil Unclassified soil 46.9216 -120.6586 2260222864 3944634 882 45 1469 49 Unrestricted 20.35 Metagenome 3300012093 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06) DOE Joint Genome Institute (JGI) 3300012093 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.1266 163.9666 856706799 1839415 701 1 1309 1 SRX3372332 Unrestricted 0.0 Metagenome 3300061734 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300061734 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.407926 -82.180036 1644442749 2781560 589 10 1096 18 Restricted 0.0 Metagenome 3300001294 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - Naphthalene biodegradation metagenome 13C3doseC DOE Joint Genome Institute (JGI) 3300001294 Metagenome Analysis No Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.292222 -73.604444 8234700 19113 4 0 7 0 Unrestricted 0.0 Metagenome 3300009984 *Microbiome Permanent Draft Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_127 metaG DOE Joint Genome Institute (JGI) 3300009984 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes esinger@lbl.gov; twoyke@lbl.gov Esther Singer; Tanja Woyke No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 30.387 -97.7301 33739792 76198 104 6 179 12 SRX4807284 Unrestricted 0.0 Metagenome 3300043618 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 134-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043618 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.937 -107.0131 430724569 1091636 403 15 690 27 Unrestricted 7.19 Metagenome 3300028174 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_135 DOE Joint Genome Institute (JGI) 3300028174 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified marine 48.6 -123.5 312029324 575350 222 0 307 1 SRX5244708 Unrestricted 36.19 Metagenome 3300004183 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 3_LOW4 DOE Joint Genome Institute (JGI) 3300004183 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 252939869 720076 137 0 288 1 SRX2719626 Unrestricted 0.0 Metagenome 3300025525 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_5A (SPAdes) DOE Joint Genome Institute (JGI) 3300025525 Metagenome Analysis spades v. 3.11.1 Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 144067389 211812 114 2 143 1 SRX3321862 Unrestricted 0.0 Metagenome 3300043957 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_CSTR_066 DOE Joint Genome Institute (JGI) 3300043957 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 96307438 135472 104 0 124 2 SRX12654503 Unrestricted 193.68 Metagenome 3300018038 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10 DOE Joint Genome Institute (JGI) 3300018038 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 1482415657 2923863 806 48 1300 81 SRX3959986 Unrestricted 6.8 Metagenome 3300043665 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 390-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043665 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9906 -107.0623 323207236 867590 336 9 575 16 Unrestricted 6.76 Metagenome 3300033182 *Microbiome Permanent Draft Marine Lake Metagenomes Marine lake microbial communities from Goby Lake in Palau - P13011_1A Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300033182 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy No Yes mbeman@ucmerced.edu Michael Beman No Environmental Aquatic Marine lake Marine Unclassified Marine 7.31518333 134.5022167 385435117 465815 142 0 169 0 0.0 Metagenome 3300027335 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepB_8d DOE Joint Genome Institute (JGI) 3300027335 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 143904690 262276 89 7 114 6 SRX5245290 Unrestricted 19.95 Metagenome 3300040542 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_003-M-20130701-COMP-DNA1 Argonne National Laboratory 3300040542 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 2700608 7668 21 0 47 0 ERX2133936 0.0 Metagenome 3300031452 *Microbiome Permanent Draft Rock endolithic microbial communities from Victoria Land, Antarctica Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand nord DOE Joint Genome Institute (JGI) 3300031452 Metagenome Analysis spades v. 3.12.0 Yes Yes selbmann@unitus.it Laura Selbmann Yes 32139564 Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock -74.2 162.5 645594413 941485 170 25 211 36 SRX5225094 Unrestricted 48.81 Metagenome 3300017711 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Lab enriched deep subsurface shale carbon reservoir viral communities from Ohio, USA - WG14 viral induction ssDNA DOE Joint Genome Institute (JGI) 3300017711 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 6461570 11370 33 1 232 5 SRX7206578 Unrestricted 377.59 Metagenome 3300047474 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_170517.NP2 DOE Joint Genome Institute (JGI) 3300047474 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 404593504 803392 255 20 345 25 Unrestricted 11.47 Metagenome 3300024980 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 14_LOW5 (SPAdes) DOE Joint Genome Institute (JGI) 3300024980 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 158841278 271939 83 0 117 0 SRX2720117 Unrestricted 0.0 Metagenome 3300000546 *Microbiome Permanent Draft Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN_Illumina_Assembled Beijing Genomics Institute (BGI), Lifesequencing S.L. 3300000546 Metagenome Analysis Flash v1.0.3; SOAPdenovo released per JGI data release policy No Yes manuel.fernandez@eez.csic.es Fernandez-Lopez, Manuel No Host-associated Plants Rhizosphere Roots Soil Quercus rhizosphere 36.96971 -3.46027 113208407 331155 473 51 890 107 0.0 Metagenome 3300070584 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_002-M-20180724-COMP-DNA1 Battelle Memorial Institute 3300070584 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.136134 -99.232896 7-7.81 16667079 50044 72 13 162 27 0.0 Metagenome 3300071107 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_054-M-20170614-COMP-DNA1 3300071107 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 28605 101 0 2 0 0 0.0 Metagenome 3300000619 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 27AUG2007 epilimnion DOE Joint Genome Institute (JGI) 3300000619 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300049357 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MDF3 DOE Joint Genome Institute (JGI) 3300049357 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 304236636 806019 344 11 689 11 Unrestricted 7.54 Metagenome 3300047293 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Hudson River, NewYork, USA - NASQAN2016_159 DOE Joint Genome Institute (JGI) 3300047293 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 41.7216 -73.9411 81051384 213564 153 13 301 36 Unrestricted 51.67 Metagenome 3300008225 *Microbiome Permanent Draft Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico and Hudson Canyon, USA Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN8B Hudson Canyon DOE Joint Genome Institute (JGI) 3300008225 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mcredmond@uncc.edu Molly C. Redmond No Environmental Aquatic Cold seeps Marine Unclassified Methane seep mesocosm 39.29 -72.2 290980820 549812 1329 3 2352 8 SRX2754426 Unrestricted 0.0 Metagenome 3300020181 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_10 DOE Joint Genome Institute (JGI) 3300020181 Metagenome Analysis spades v. 3.10.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.3049 -116.2547 882401169 2245240 945 75 1785 97 SRX3936361 Unrestricted 16.39 Metagenome 3300005605 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV67 DOE Joint Genome Institute (JGI) 3300005605 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 796652412 2060192 850 24 1367 40 SRX2782318 Unrestricted 0.0 Metagenome 3300003384 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09.2A1-12 DOE Joint Genome Institute (JGI) 3300003384 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 744690 2461 34 3 65 5 SRX2576250 Unrestricted 0.0 Metagenome 3300029846 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36012 Beijing Genomics Institute (BGI) 3300029846 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 189303017 245220 177 1 222 2 0.0 Metagenome 3300028353 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF #256 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028353 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 50177156 82871 20 1 34 1 SRX3296277 Unrestricted 0.0 Metagenome 3300026785 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A5w-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300026785 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 25724208 82915 116 3 213 8 SRX1991140 Unrestricted 0.0 Metagenome 2225789007 *Microbiome Permanent Draft Marine microbial communities from a deep-sea hydrothermal vent at Loihi Seamount, Hawaii Marine microbial communities from hydrothermal vents at Loihi seamountain, Hawaii Pennsylvania State University 2225789007 Metagenome Analysis released per JGI data release policy No Yes esthersi@usc.edu Esther Singer Yes 23518919 Environmental Aquatic Hydrothermal vents Marine Unclassified Marine 18.92 -155.27 8 11793818 19650 6 0 10 0 0.0 Metagenome 3300006978 *Microbiome Permanent Draft Non-marine hypersaline water viral communities from Mallorca, Spain, POOL 1-2-3 virus M8 Mallorca 14 Non-marine hypersaline water viral communities from Mallorca, Spain, 2024 - Pool_1_virus M8 University of Alicante 3300006978 Metagenome Analysis IDBA 1.1.1 PRE correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline water 39.333 3.05 6763728 15676 18 1 6 3 0.0 Metagenome 3300054575 *Microbiome Permanent Draft Co-cultures of unialgal cyanobacteria with co-existing heterotrophic bacteria from Dresden University of Technology, Germany Contaminated culture of unialgal cyanobacteria from Dresden University of Technology, Germany - Nostoc_microscopicum_S25 DOE Joint Genome Institute (JGI) 3300054575 Metagenome Analysis MetaFlye v. 2.9-b1768 released based on JGI ITS Yes Yes paul.dagostino@tu-dresden.de Paul M. D'Agostino No Host-associated Microbial Unclassified Bacteria Unclassified Lab culture 51.028586 13.73135 4313194 5438 3 0 3 0 Restricted 0.0 Metagenome 3300011986 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S12-03-R University of California, Los Angeles 3300011986 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 215192896 354569 153 2 237 3 SRX862120 0.0 Metagenome 3300042455 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jul2015-rr0468 DOE Joint Genome Institute (JGI) 3300042455 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1000752718 1547154 333 53 429 72 Unrestricted 23.07 Metagenome 3300000405 *Microbiome Draft Hypersaline microbial communities from Lake Vida, Antarctica Hypersaline microbial communities from Lake Vida, Antarctica - sample: Brine Hole Two 0.1-0.2 micron DOE Joint Genome Institute (JGI) 3300000405 Metagenome Analysis released based on JGI ITS Yes Yes alison@dri.edu Alison Murray No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline -77.38861 161.931111 168052752 452833 37 2 66 7 Unrestricted 0.0 Metagenome 3300037603 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - ARW1_20151124 DOE Joint Genome Institute (JGI) 3300037603 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 255755498 351847 108 14 162 16 SRX9140356 Unrestricted 44.83 Metagenome 3300010299 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNA DOE Joint Genome Institute (JGI) 3300010299 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes bcampb7@clemson.edu Barbara Campbell Yes 29703736 Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 37.5161 -76.1223 592271825 1335709 268 4 481 8 SRX2526852 Unrestricted 0.0 Metagenome 3300008739 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 737052003 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008739 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 149647688 208157 114 0 127 0 0.0 Metagenome 3300036174 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C5-9C DOE Joint Genome Institute (JGI) 3300036174 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 130966789 420679 296 7 539 11 SRX8803454 Unrestricted 4.46 Metagenome 3300048007 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_190403.NP1 DOE Joint Genome Institute (JGI) 3300048007 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 575742689 1179100 321 31 443 57 Unrestricted 17.47 Metagenome 3300020252 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine prokaryotic communities collected during Tara Oceans survey from station TARA_078 - TARA_B100000524 (ERX555968-ERR599022) CEA Genoscope 3300020252 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -30.1885 -43.2831 122055192 347662 199 24 290 29 0.0 Metagenome 3300029795 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 027_10_28_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029795 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 277918628 390927 322 0 464 0 0.0 Metagenome 3300049585 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 DOE Joint Genome Institute (JGI) 3300049585 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.407926 -82.180036 1041059329 1797312 450 24 867 41 Unrestricted 15.41 Metagenome 3300028198 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_100 DOE Joint Genome Institute (JGI) 3300028198 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified marine 48.6 -123.5 573029827 1099600 390 52 525 86 SRX5244707 Unrestricted 20.24 Metagenome 3300009616 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_8_100 DOE Joint Genome Institute (JGI) 3300009616 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 324781543 522189 168 2 239 2 SRX3003281 Unrestricted 0.0 Metagenome 3300001278 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY75 J. Craig Venter Institute (JCVI) 3300001278 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 1573782393 5620449 122 125 509 213 0.0 Metagenome 3300009471 *Microbiome Permanent Draft Host-associated microbial communities of aphids from plants in several locations around USA Microbial communities of aphids from galls on Rhus javanica in Mt Takao, Hachioji, Japan - Schlechtendalia chinensis CVD94-71 seqcov University of Texas, Austin 3300009471 Metagenome Analysis CLC Genomics released per JGI data release policy Yes Yes becky.chong@utexas.edu Rebecca Chong No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified galls on Rhus javanica 35.651567 139.323954 165125363 104138 1 1 1 1 0.0 Metagenome 3300060730 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Lower Teakettle, Sierra National Forest, California, USA - TEAK_043-M-20210719-comp-1 DOE Joint Genome Institute (JGI) 3300060730 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 36.999698 -119.011037 1346573611 2404841 565 51 980 73 Unrestricted 15.68 Metagenome 3300000290 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM291 Beijing Genomics Institute (BGI), Macrogen 3300000290 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 79724308 116778 351 1 510 0 0.0 Metagenome 3300046376 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA025-TCB DOE Joint Genome Institute (JGI) 3300046376 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6875 -83.5012 868340995 2166717 560 60 1020 112 Unrestricted 9.04 Metagenome 3300001712 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-31 DOE Joint Genome Institute (JGI) 3300001712 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 48.969 -130.6661 28037777 53469 9 1 7 1 Unrestricted 0.0 Metagenome 3300029003 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 276_4M Beijing Genomics Institute (BGI) 3300029003 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 54470789 63433 36 0 57 0 ERX491064 0.0 Metagenome 3300009549 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_20_100 DOE Joint Genome Institute (JGI) 3300009549 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 379497119 630530 217 3 379 7 SRX3005976 Unrestricted 0.0 Metagenome 3300045091 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_4_A DOE Joint Genome Institute (JGI) 3300045091 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 132201155 166012 79 1 95 2 Unrestricted 116.88 Metagenome 3300004249 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 129_HOW14 DOE Joint Genome Institute (JGI) 3300004249 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 67732531 127165 53 0 90 0 SRX2722019 Unrestricted 0.0 Metagenome 3300027423 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A1a-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300027423 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 15897233 56268 64 0 101 0 SRX1991102 Unrestricted 0.0 Metagenome 3300003872 *Microbiome Permanent Draft Black Smoker Hydrothermal vent Microbial communities from Manus Basin , Bismarck Sea Black Smoker Hydrothermal vent Microbial communities from Manus Basin , Bismarck Sea - Sample 373Cnorm Max Planck Institute for Plant Breeding Research 3300003872 Metagenome Analysis BBNorm/IDBA_UD released per JGI data release policy No Yes ppjevac@mpi-bremen.de, pjevac@microbial-ecology.net Petra Pjevac No Environmental Aquatic Hydrothermal vents Marine Black smokers Black smoker hydrothermal chimney -3.721194 151.674553 95292087 122217 72 1 90 1 0.0 Metagenome 3300049439 *Microbiome Permanent Draft Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama - S002_CH2_drought DOE Joint Genome Institute (JGI) 3300049439 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes njbouskill@lbl.gov Nicholas Bouskill No Environmental Terrestrial Tropical forest Soil Bulk soil Soil 9.17936 -79.8296 444882337 1157798 293 11 520 21 Unrestricted 7.92 Metagenome 3300011896 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00994 Weill Cornell Medical College 3300011896 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.59 -73.76 47105821 82018 40 2 47 1 SRX822956 0.0 Metagenome 3300040108 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_003-M-20170829-COMP-DNA1 Battelle Memorial Institute 3300040108 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 11797931 34046 54 6 89 6 0.0 Metagenome 3300021246 *Microbiome Permanent Draft Environmental DNA from river Freshwater microbial communities from Jinzu River in Toyama Prefecture, Japan-20170104_2, 0.02 Toyama Prefectural University 3300021246 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic River Freshwater Unclassified freshwater 36.59547 137.18744 98668875 299914 34 0 66 9 0.0 Metagenome 3300045169 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_7_B DOE Joint Genome Institute (JGI) 3300045169 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 215268489 246039 112 1 131 2 Unrestricted 109.48 Metagenome 3300002158 *Microbiome Permanent Draft Freshwater and sediment microbial communities from a dead zone in Lake Erie, USA Freshwater microbial communities from Lake Superior, Canada - Sta WM archaea DOE Joint Genome Institute (JGI) 3300002158 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes rmmckay@bgsu.edu Robert McKay, Robert M. McKay No Environmental Aquatic Lake Freshwater Unclassified Freshwater and sediment 47.77199 -86.881 61815492 101137 21 10 26 12 SRX1991081 Unrestricted 0.0 Metagenome 3300014240 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 234_L1_2014-7-25 San Diego State University 3300014240 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 1321078 5177 8 7 32 19 0.0 Metagenome 3300060414 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210531_04_13 DOE Joint Genome Institute (JGI) 3300060414 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 677653465 1048224 252 126 353 165 Unrestricted 28.6 Metagenome 3300013355 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01514 Weill Cornell Medical College 3300013355 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.99 15750120 24707 12 0 17 0 SRX823390 0.0 Metagenome 3300018414 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater sediment microbial communities in response to fracking from North America - Little Laurel Run_MetaG_LLRF_2013 (version 2) DOE Joint Genome Institute (JGI) 3300018414 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment watersheds 41.170727 -78.4726 1736244236 2499714 693 767 1047 1107 Unrestricted 11.13 Metagenome 3300048936 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_4_A (version 2) DOE Joint Genome Institute (JGI) 3300048936 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 150689852 189864 94 1 111 1 Restricted 0.0 Metagenome 3300048771 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 S1 20-24 DOE Joint Genome Institute (JGI) 3300048771 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.0474 440595117 607676 107 0 163 2 Restricted 22.78 Metagenome 3300027302 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepA_8d DOE Joint Genome Institute (JGI) 3300027302 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 201925618 360292 160 14 233 22 SRX5245197 Unrestricted 13.81 Metagenome 3300070360 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Alaska, USA - DEJU_046-O-20160817-COMP-DNA2 3300070360 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 60807868 152073 53 23 111 38 0.0 Metagenome 3300013569 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100415 University of Pennsylvania 3300013569 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 1518603 4485 4 0 14 0 SRX756583 0.0 Metagenome 3300070742 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_041-M-20170801-COMP-DNA1 3300070742 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 51521568 144109 77 3 159 9 0.0 Metagenome 3300014596 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00228 Weill Cornell Medical College 3300014596 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.88 -73.89 20585399 32562 9 0 20 0 SRX822207 0.0 Metagenome 3300026317 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0919_12_20cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026317 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 596198527 1061903 365 15 635 17 SRX2519697 Unrestricted 0.0 Metagenome 3300011745 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01157 Weill Cornell Medical College 3300011745 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.69 -73.92 19931047 23621 8 0 19 0 SRX823112 0.0 Metagenome 7000000035 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2 of subject 763961826 replicate 2 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000035 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 5680643 13507 0 0 0 0 SRX098555, SRX024155 0.0 Metagenome 3300009878 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA16 University of New South Wales 3300009878 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 31147519 55678 27 0 50 0 0.0 Metagenome 3300038652 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Cemetery Lake, Antarctica - #69 Australian Centre for Ecogenomics 3300038652 Metagenome Analysis Spades v. 3.12.0 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.6267 77.964067 181774113 372237 80 5 107 10 0.0 Metagenome 3300031573 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111 DOE Joint Genome Institute (JGI) 3300031573 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 2212374572 4918452 703 15 1344 19 SRX5665916 Unrestricted 10.2 Metagenome 3300002393 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002393 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 36719846 92745 95 4 165 7 SRX1989917 Unrestricted 0.0 Metagenome 3300065614 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 804 in Youngstown, Alberta, Canada - S00JY_0667 Microbiome Insights 3300065614 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.42228558 -111.0505801 503059543 624988 162 0 212 0 0.0 Metagenome 3300022041 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022041 Metagenome Analysis spades v. 3.11.1-check Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 2299817 8348 0 1 0 1 SRX8127183, SRX8127182 Unrestricted 0.0 Metagenome 3300005973 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Section #2 (SPADES assembly) (version 2) DOE Joint Genome Institute (JGI) 3300005973 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, jim.fredrickson@pnnl.gov Natasha Ivanova, Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.973481 -119.476345 49020469 66125 70 7 87 16 SRX3311901 Unrestricted 0.0 Metagenome 3300013587 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100360 University of Pennsylvania 3300013587 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 2806404 7835 14 2 35 5 SRX756297 0.0 Metagenome 3300026066 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026066 Metagenome Analysis spades v. 3.11.1 released Yes Yes jzz0026@lbl.gov; sgtringe@lbl.gov Jinglie Zhou; Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.05241603 -121.76907401 84862371 220232 165 2 292 5 SRX7182402 Unrestricted 0.0 Metagenome 3300064763 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 592 in High Prairie, Alberta, Canada - S00JY_0728 Microbiome Insights 3300064763 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 55.24151489 -116.2510406 47501847 69982 36 1 77 0 0.0 Metagenome 3300059762 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1547A-02 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059762 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2314 -123.8828 207812968 433905 149 6 216 11 SRX2753626 Unrestricted 0.0 Metagenome 3300020578 *Microbiome Permanent Draft Freshwater microbial communities from Lake Tanganyika, Tanzania Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015038 Kigoma Deep Cast 35m DOE Joint Genome Institute (JGI) 3300020578 Metagenome Analysis spades v. 3.10.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater lake -4.9054 29.4853 1371135391 2326845 475 111 648 143 SRX3984333 Unrestricted 48.56 Metagenome 3300001552 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from the Cayman RIse, Caribbean Sea Hydrothermal vent plume microbial communities from the Cayman RIse, Caribbean Sea - Cayman Deep_MG2b 3300001552 Metagenome Analysis Velvet, MetaVelvet, Minimus released by JGI data releasing policy No Yes menli@umich.edu Meng Li No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 18.3763 -81.7891 1750425 1803 1 0 2 0 0.0 Metagenome 3300051666 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Frauenau, Bavaria, Germany - BW_CL_019D DOE Joint Genome Institute (JGI) 3300051666 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.99839 13.359531 949483970 2129884 387 16 783 23 Unrestricted 9.04 Metagenome 3300032954 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2 DOE Joint Genome Institute (JGI) 3300032954 Metagenome Analysis spades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified soil 26.5052 -80.2345 2918074053 5803502 1232 103 1989 144 SRX5666828 Unrestricted 8.93 Metagenome 3300045187 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_1_E DOE Joint Genome Institute (JGI) 3300045187 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 173669297 201298 104 1 122 2 Unrestricted 115.15 Metagenome 3300041780 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - C_27_wk_2 DOE Joint Genome Institute (JGI) 3300041780 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.8816 -106.962 166158984 511129 335 12 641 26 SRX14808254 Unrestricted 7.74 Metagenome 3300021590 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-12-13_MG DOE Joint Genome Institute (JGI) 3300021590 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.0114 -110.5956 121224396 291648 142 1 210 3 SRX3982315 Unrestricted 23.64 Metagenome 3300008338 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763860675 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008338 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 7067196 15840 21 0 48 0 0.0 Metagenome 3300015200 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300015200 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 1882444774 4419224 1567 112 2695 223 SRX4808252, SRX4808253 Unrestricted 0.0 Metagenome 3300007637 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1556A-02 DOE Joint Genome Institute (JGI) 3300007637 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2022 -123.941 315747295 598308 351 31 582 50 Unrestricted 0.0 Metagenome 3300005929 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica - Antarctic Deep Lake Metagenome 022AM DOE Joint Genome Institute (JGI) 3300005929 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli, Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5627 78.1882 119306653 314754 118 15 226 17 SRX2746572 Unrestricted 0.0 Metagenome 3300012051 *Microbiome Permanent Draft Norwegian Young Sea Ice 2015 - N-ICE15 Seawater microbial communities from Norwegian Young Sea Ice, Arctic Ocean, Norway, 2015 - N-ICE15, floe 4, site 3, 250m LGC Genomics 3300012051 Metagenome Analysis Ray v 2.3.1 released by JGI data releasing policy No Yes antonioggsousa@gmail.com; cmagalhaes@ciimar.up.pt Antonio Sousa; Catarina Magalh?es No Environmental Aquatic Mesopelagic Marine Unclassified marine 80.500215 7.866786 1353283 6200 12 9 13 17 0.0 Metagenome 3300000215 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 53 01/11/11 120m DOE Joint Genome Institute (JGI) 3300000215 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 166997272 321955 131 1 240 3 Unrestricted 0.0 Metagenome 3300029710 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36051 Beijing Genomics Institute (BGI) 3300029710 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 224320430 279294 157 1 239 1 0.0 Metagenome 3300022825 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #730 DOE Joint Genome Institute (JGI) 3300022825 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 137992510 263178 111 5 159 6 SRX4397182 Unrestricted 21.43 Metagenome 3300030011 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_3 DOE Joint Genome Institute (JGI) 3300030011 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 1481681825 2981163 539 29 890 54 SRX5356676 Unrestricted 13.27 Metagenome 3300000268 *Microbiome Permanent Draft Lotic microbial communities from Mississippi River at two locations in the state of Minnesota Lotic microbial communities from Mississippi River at two locations in the state of Minnesota, sample from River Site 1, Mississippi Headwaters ver2 University of Minnesota 3300000268 Metagenome Analysis released per JGI data release policy No Yes gibb0098@umn.edu Brian Gibbens No Environmental Aquatic Lotic Freshwater Unclassified Lotic 47.349634 -95.182806 394709976 812231 228 20 432 28 0.0 Metagenome 3300008629 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 2.7-0.2um Georgia Genomics Facility 3300008629 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 700984075 897333 368 11 450 14 0.0 Metagenome 3300005209 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - site 3 B9 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300005209 Metagenome Analysis HGAP3 v. smrtanalysis-2.2.0.133377 Released by Nikos bc they passed the 6 months embargo date Yes Yes rmkelly@ncsu.edu Robert Kelly No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6102 -110.4387 7200399 7802 9 0 9 0 SRX2554339, SRX2554338, SRX2554346, SRX2554355, SRX2554344, SRX2554345, SRX2554342, SRX2554343, SRX2554340, SRX2554341 Unrestricted 0.0 Metagenome 3300039381 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 615_M Beijing Genomics Institute (BGI) 3300039381 Metagenome Analysis Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 143373236 204133 127 0 216 0 ERX491270 0.0 Metagenome 3300043603 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 099-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043603 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9279 -106.9742 595632577 1561942 461 65 805 110 Unrestricted 6.89 Metagenome 2170459016 *Microbiome Permanent Draft Switchgrass, maize and mischanthus litter microbial communities from University of Illinois Energy Farm, Urbana, IL Litter degradation ZMR2 University of Illinois, Urbana-Champaign 2170459016 Metagenome Analysis released per JGI data release policy No Yes lixz@illinois.edu Xiangzhen Li No Engineered Solid waste Composting Grass Unclassified Switchgrass, maize and mischanthus litter 40.1097 -88.2041 217108529 558643 237 28 421 42 0.0 Metagenome 3300069477 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_014-O-20160818-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069477 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 31909677 90484 71 5 114 9 0.0 Metagenome 3300014612 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01216 Weill Cornell Medical College 3300014612 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.86 -73.89 26114691 45956 18 0 29 0 SRX823171 0.0 Metagenome 3300046510 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 soil DOE Joint Genome Institute (JGI) 3300046510 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121352 -123.270987 5.48 628137002 1070143 248 21 410 32 Unrestricted 13.82 Metagenome 3300024461 *Microbiome Permanent Draft Air-Cathode Microbial Fuel Cell Anaerobic digester sludge enriched bacterial communities from WWTP in Fort Collins, Colorado, USA - MFC Colorado State University 3300024461 Metagenome Analysis MegaHit v. 1.0.6 released by JGI data releasing policy Yes Yes karen.rossmassler@gmail.com Karen Rossmassler No Engineered Wastewater Unclassified Anaerobic digestor Unclassified Activated sludge 40.583235 -105.060349 13119941 27939 32 5 50 10 0.0 Metagenome 3300027541 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepC_8h DOE Joint Genome Institute (JGI) 3300027541 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 265149184 591877 243 19 370 41 SRX5245406 Unrestricted 12.75 Metagenome 3300028482 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung D8 DOE Joint Genome Institute (JGI) 3300028482 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Elk feces 38.04 -122.5 169745134 342907 333 44 489 48 SRX5092967, SRX5092968 Unrestricted 0.0 Metagenome 3300023270 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L169-409R-5 DOE Joint Genome Institute (JGI) 3300023270 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 402665431 915496 438 74 843 124 SRX4801192 Unrestricted 7.57 Metagenome 3300027479 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A4w-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300027479 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 34050856 113149 118 2 221 4 SRX2576240 Unrestricted 0.0 Metagenome 7000000470 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 763759525 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000470 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2461349 2675 0 0 0 0 0.0 Metagenome 3300011256 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_4, total Toyama Prefectural University 3300011256 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Sediment marine 37.36023 137.9591 130199097 325277 52 6 116 23 0.0 Metagenome 3300031830 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MSe4 DOE Joint Genome Institute (JGI) 3300031830 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 317592575 662225 213 0 286 1 SRX6411436 Unrestricted 220.83 Metagenome 3300048802 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-F1(1) 10-14 DOE Joint Genome Institute (JGI) 3300048802 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0433 429842947 697940 212 2 327 4 Restricted 13.16 Metagenome 3300070799 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_003-M-20190729-COMP-DNA1 3300070799 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 4234592 13962 50 3 79 9 0.0 Metagenome 3300033474 *Microbiome Permanent Draft Meromitic Lake A Freshwater microbial communities from meromitic lake A, Ellesmere Island, Canada - Sample 40m re-analysis2 Laval University 3300033474 Metagenome Analysis Megahit v. 1.0.5 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 82.99445 -75.443367 1128848223 2549428 872 4 1375 1 0.0 Metagenome 3300059733 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1557A-3 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059733 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2763 -124.0055 73052478 179552 162 45 258 90 Unrestricted 0.0 Metagenome 3300007186 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 246515023 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007186 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 131731885 184481 92 1 108 0 0.0 Metagenome 3300024250 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 58D_r DOE Joint Genome Institute (JGI) 3300024250 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 254140256 645008 242 59 365 108 SRX4474416 Unrestricted 14.73 Metagenome 3300006744 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 158256496 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006744 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 125228000 229546 135 0 179 1 0.0 Metagenome 3300035076 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 29_7.5_M_2 DOE Joint Genome Institute (JGI) 3300035076 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1863 -2.2145 731226098 2004295 713 17 1238 44 SRX8234987 Unrestricted 7.03 Metagenome 3300041397 *Microbiome Draft Soil microbial communities from Pirana landfill, Ahmedabad, India Soil microbial communities from Pirana landfill, Ahmedabad, India - LSS01 CeGaT 3300041397 Metagenome Analysis Megahit v. 1.2.9 released by JGI data releasing policy No Yes mitali.merchant@iitkgp.ac.in Mitali Merchant No Environmental Terrestrial Unclassified Soil Unclassified soil 22.9806 72.566 210462073 435968 360 8 541 21 0.0 Metagenome 3300036391 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Drouetiella hepatica UHER 2000/2452 and co-occurring heterotrophs from rock surface from Slovak Paradise National Park, Hrabusice, Kosice Region, Slovakia - 20190125_17 DOE Joint Genome Institute (JGI) 3300036391 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Rock surface 48.9513 20.3835 66971559 80473 23 0 28 0 SRX8847395 Unrestricted 188.43 Metagenome 3300021515 *Microbiome Permanent Draft Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.9 DOE Joint Genome Institute (JGI) 3300021515 Metagenome Analysis spades v. 3.11.1-check Yes Yes dysumner@ucdavis.edu Dawn Sumner No Environmental Aquatic Lake Freshwater Microbial mats freshwater microbial mat -77.5281 161.59 332971079 767118 281 16 567 32 SRX3787610 Unrestricted 43.02 Metagenome 3300003077 *Microbiome Permanent Draft Acid mine drainage microbial communities from Carnoules, Gard, France Acid Mine Drainage microbial communities from Carnoules, Gard, France, bin 6 CEA Genoscope 3300003077 Metagenome Analysis Made public because these are downloaded from Genbank No Yes ipagani@lbl.gov Pelletier,E., Ionna Pagani No Environmental Aquatic Groundwater Freshwater Contaminated Acid mine drainage 43.303 6.188 2498537 2560 1 0 1 0 0.0 Metagenome 2100351012 *Microbiome Permanent Draft Coastal water and sediment microbial communities from Arctic Ocean, off the coast from Alaska Marine sediment microbial communities from Arctic Ocean, off the coast from Alaska - sample from low methane PC12-244-90cm DOE Joint Genome Institute (JGI) 2100351012 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes kirchman@cms.udel.edu, kirchman@udel.edu David Kirchman No Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Coastal water and sediment 74.0678 -145.54687 339945372 823046 74 8 44 0 Unrestricted 0.0 Metagenome 3300029550 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P101V1 Beijing Genomics Institute (BGI) 3300029550 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 88719162 117076 97 0 134 0 0.0 Metagenome 3300044689 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - COA2D DOE Joint Genome Institute (JGI) 3300044689 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 974176666 1774179 468 14 989 21 Unrestricted 17.9 Metagenome 3300032284 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime Ecozone, Canada - Lake 07-022 Genome Quebec 3300032284 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.517504 -65.495287 646065599 1317938 276 62 490 106 0.0 Metagenome 3300004057 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleC_D2 DOE Joint Genome Institute (JGI) 3300004057 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.224476 -122.019341 717491296 2356092 811 8 1730 15 SRX7143104 Unrestricted 0.0 Metagenome 3300010242 *Microbiome Permanent Draft Microbial communities from interfaces within marine sediments from the South China Sea Marine sediment microbial community from turbidite sediment within the South China Sea Oregon State University 3300010242 Metagenome Analysis MetaSPAdes v.3.8.1 released per JGI data release policy No Yes michaelgraw@gmail.com Michael Graw No Environmental Aquatic Unclassified Sediment Unclassified Marine sediment 12.91889 115.04722 153.57 47748427 116264 35 4 56 2 0.0 Metagenome 3300042800 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S3_20_30 NMDC pilot DOE Joint Genome Institute (JGI) 3300042800 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen Yes 29920461 Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228508 -119.2716818 86362605 225404 146 1 284 2 SRX2523283 0.0 Metagenome 3300000850 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from University of Liverpool Illum_50ngNex_Meta-Velvet University of Liverpool 3300000850 Metagenome Analysis Meta-Velvet released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 22956691 27966 55 0 99 0 0.0 Metagenome 3300012176 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ036 MetaG DOE Joint Genome Institute (JGI) 3300012176 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.746 -74.7609 286724669 555345 229 36 385 77 SRX3539471 Unrestricted 0.0 Metagenome 3300022480 *Microbiome Permanent Draft Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain - individual 11 Autonomous University of Barcelona 3300022480 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.38 -0.51 5085306 7156 6 0 10 0 0.0 Metagenome 3300021568 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-100-LTR Downsampled Assembly University of Michigan 3300021568 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7635 -83.3309 8.835 14936188 25965 17 7 19 9 0.0 Metagenome 3300038796 *Microbiome Finished Crude oil contaminated agricultural soil mecrobial communities from various regions in India Soil microbial community of crude oil contaminated soil of Naharkatiya region, Assam, India - N1 Eurofins Genomics India Pvt Ltd. 3300038796 Metagenome Analysis CLC Genomic workbench v. 9.5.2 released by JGI data releasing policy No Yes nanditadas753@gmail.com nandita das No Environmental Terrestrial Unclassified Soil Oil-contaminated Soil 27.287 95.2476 327121813 517572 56 11 98 15 0.0 Metagenome 2228664004 *Microbiome Draft Laboratory Nasutitermes corniger gut microbial communities from Florida, USA P3 Gut Segment Termite Single Cell Genome_Treponema sp. T3b, from Florida USA DOE Joint Genome Institute (JGI) 2228664004 Metagenome Analysis Newbler, Velvet released based on JGI ITS No Yes stringe@lbl.gov, phugenholtz@gmail.com Susannah Tringe, Phil Hugenholtz No Host-associated Arthropoda: Insects Hindgut Digestive system Paunch/P3 segment Laboratory Nasutitermes corniger gut 26.135 -80.129 4643663 10566 6 0 3 0 Unrestricted 0.0 Metagenome 3300053074 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 soil DOE Joint Genome Institute (JGI) 3300053074 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.588248 -123.19409 6.61 282590174 543727 71 1 123 2 Unrestricted 24.26 Metagenome 3300035151 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0819M58 DOE Joint Genome Institute (JGI) 3300035151 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0387 598587128 1448266 653 3 1226 5 SRX8272971 Unrestricted 6.88 Metagenome 3300046750 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_190501.NP1 DOE Joint Genome Institute (JGI) 3300046750 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 562246802 1174478 279 35 448 68 Unrestricted 13.51 Metagenome 3300025164 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 4 (version 2) DOE Joint Genome Institute (JGI) 3300025164 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 1300725520 2732966 1162 7 2010 19 SRX1990951 Unrestricted 0.0 Metagenome 3300003598 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter B (PS_B) MetaG DOE Joint Genome Institute (JGI) 3300003598 Metagenome Analysis Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Thermal spring 44.376 -110.69 73220362 118677 79 0 91 0 SRX2577285 Unrestricted 0.0 Metagenome 3300029434 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 053_3_8_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029434 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 236953088 310555 241 0 292 0 0.0 Metagenome 3300054054 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_8_150 re-annotation DOE Joint Genome Institute (JGI) 3300054054 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 328575257 615022 171 4 283 7 SRX3003289 0.0 Metagenome 3300038845 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes in Niagara, Canada Freshwater lake microbial communities from the Great Lakes in Niagara, Canada - LS-5W-Aug9-2012 McMaster University 3300038845 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.2052 -79.2648 5878789 13397 18 4 34 9 0.0 Metagenome 3300050122 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim1 80-84 DOE Joint Genome Institute (JGI) 3300050122 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.352987 19.047292 208413872 336775 108 5 163 9 Restricted 32.29 Metagenome 3300044955 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Kowloon Bay, Hong Kong - P4L DOE Joint Genome Institute (JGI) 3300044955 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Unclassified Marine Unclassified Seawater 22.3 114.2 436917777 964377 597 175 900 279 Unrestricted 20.78 Metagenome 3300012622 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100370 University of Pennsylvania 3300012622 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 22700208 49685 56 10 102 22 SRX756287 0.0 Metagenome 3300039230 *Microbiome Draft Microbial communities from sediments and seawater samples from Gulf of Mexico Marine sediment microbial communities from Coatzacoalco region, Gulf of Mexico, Mexico - C13_station v.2 Ensenada Center for Scientific Research and Higher Education, Baja California 3300039230 Metagenome Analysis megahit v. 1.1.2 released by JGI data releasing policy Yes Yes metagenomics.group@gmail.com Asuncion Lago No Environmental Aquatic Sediment Marine Unclassified Marine Sediments 20.5965167 -94.3132 108929368 275739 91 3 225 5 0.0 Metagenome 3300070398 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_035-O-20200715-COMP-DNA1 3300070398 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 38984016 109450 57 4 119 7 0.0 Metagenome 3300044667 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - CSC3S DOE Joint Genome Institute (JGI) 3300044667 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 2065585791 3502873 598 26 1033 48 Unrestricted 13.18 Metagenome 3300027913 *Microbiome Permanent Draft Wastewater bacterial communities from water purifying plant in Alicante, Spain Wastewater bacterial communities from water purifying plant in Alicante, Spain - Replicate C3 Polytechnic University of Valencia 3300027913 Metagenome Analysis metaSPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 38.43 -0.42 124285704 214832 113 9 180 8 0.0 Metagenome 3300006668 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T14 (1) BES Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006668 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 43686489 81774 56 0 77 1 0.0 Metagenome 3300002724 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A5-12 DOE Joint Genome Institute (JGI) 3300002724 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 880104 2990 24 1 51 0 SRX1991252 Unrestricted 0.0 Metagenome 3300002351 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 05MAY2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002351 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 66302080 164627 96 14 194 26 SRX1989749 Unrestricted 0.0 Metagenome 3300049240 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB19 DOE Joint Genome Institute (JGI) 3300049240 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 90965943 223196 261 8 562 14 Unrestricted 17.98 Metagenome 3300024426 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_5 DOE Joint Genome Institute (JGI) 3300024426 Metagenome Analysis spades v. 3.11.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.305 -116.2547 800577437 2127945 1173 53 2192 82 SRX4366996, SRX4366997 Unrestricted 0.0 Metagenome 3300037876 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI150_2019_feb_100m DOE Joint Genome Institute (JGI) 3300037876 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 245043866 555503 207 42 366 66 SRX9402589 Unrestricted 8.91 Metagenome 3300001429 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 415-3 shallow-092012 DOE Joint Genome Institute (JGI) 3300001429 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 53974223 130360 106 17 193 24 SRX1987696 Unrestricted 0.0 Metagenome 3300048835 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Sediment microbial communities from brackish wetlands in San Jose, California, USA - ROC7_1 DOE Joint Genome Institute (JGI) 3300048835 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Intertidal zone Marine Salt marsh sediment Sediment 37.427598 -121.938678 2110580578 2988578 621 62 896 90 Unrestricted 23.11 Metagenome 3300001854 *Microbiome Permanent Draft Marine sediment microbial communities from White Oak River estuary, North Carolina Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-52-54 DOE Joint Genome Institute (JGI) 3300001854 Metagenome Analysis Yes Yes acidophile@gmail.com Brett Baker Yes 26824177 Environmental Aquatic Intertidal zone Marine Estuary: Microbial mat Marine sediment 34.6478111 -77.1112083 930812755 2122334 655 11 1378 9 SRX2554361 Unrestricted 0.0 Metagenome 3300005722 *Microbiome Permanent Draft Marine Trichodesmium cyanobacterial communities from the North Pacific Subtropical Gyre outside Oahu, Hawaii Marine Trichodesmium cyanobacterial communities from the North Pacific Subtropical Gyre outside Oahu, HI, sample from new species B colonies Pennsylvania State University 3300005722 Metagenome Analysis Unkonwn Yes Yes delong@mit.edu Edward DeLong No Environmental Aquatic Oceanic Marine Unclassified Marine 22.75 -158.0 27189071 39432 10 1 20 0 0.0 Metagenome 3300007110 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge Cinachyra sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - cg27is University of New South Wales 3300007110 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au, e.botte@aims.gov.au; n.webster@aims.gov.au Nicole Webster, Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Cinachyra sp. (marine sponge) -9.8241 150.825833 109014923 263133 46 2 76 5 0.0 Metagenome 3300040599 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Taiga, AK, USA - HEAL_047-O-20160726-COMP-DNA1 Battelle Memorial Institute 3300040599 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.87569 -149.21334 1739013 5489 22 1 35 1 0.0 Metagenome 3300049375 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - 9-1 DOE Joint Genome Institute (JGI) 3300049375 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 210234671 607700 297 4 540 8 Unrestricted 6.59 Metagenome 7000000681 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160218816 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000681 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 106303323 180313 0 0 0 0 0.0 Metagenome 3300019285 *Microbiome Permanent Draft Biogas reactor microbial communities from Swedish University of Agricultural Sciences, Alnarp, Sweden, and As, Norway that are enriched on cellulose Biogas reactor microbial communities from As, Norway - D1BOC_Hiseq_PacBio7C99_UnincorpCap3 D1B_NoIsolates_Metaspades Genomics Core Facility (Oslo University Hospital and University of Oslo) 3300019285 Metagenome Analysis Metaspades released by JGI data releasing policy No Yes phillip.b.pope@gmail.com Phil B. Pope No Engineered Bioreactor Biogas Anaerobic Unclassified Biogas reactor 59.6 10.8 26161706 37179 23 0 31 0 0.0 Metagenome 3300006615 *Microbiome Permanent Draft Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia - TJ04 time point Australian Centre for Ecogenomics 3300006615 Metagenome Analysis CLC released per JGI data release policy No Yes crinke@lbl.gov Christian Rinke No Environmental Aquatic Coastal Marine Unclassified marine surface water -34.1192 151.2267 142944013 190154 26 2 44 1 0.0 Metagenome 3300026796 *Microbiome Permanent Draft Rhizosphere and bulk soil microbial communities from Harvard Forest, USA Rhizosphere microbial communities from Harvard Forest, USA - 6Rhizosphere_unsorted metaG (SPAdes) DOE Joint Genome Institute (JGI) 3300026796 Metagenome Analysis spades v. 3.11.1 Yes Yes deangelis@microbio.umass.edu Kristen M. DeAngelis PhD No Host-associated Plants Rhizosphere Roots Soil rhizosphere 42.5502 -72.1737 19739258 68094 31 2 56 10 SRX2718010 Unrestricted 0.0 Metagenome 3300011420 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT199_2 DOE Joint Genome Institute (JGI) 3300011420 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8895 -106.9087 314349356 683693 286 11 589 33 SRX3368460 Unrestricted 0.0 Metagenome 2043231005 *Microbiome Permanent Draft Marine microbial communities from the Landsort deep, Baltic Sea Sediment 3 Soedertoern University 2043231005 Metagenome Analysis Newbler released per JGI data release policy No Yes petter.thureborn@sh.se Petter Thureborn No Environmental Aquatic Oceanic Marine Sediment Marine 58.58333333 18.23333333 13940132 33765 22 0 40 0 0.0 Metagenome 3300011995 *Microbiome Permanent Draft Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 880 - Top - Depth 1m Molecular Research LP (MR DNA) 3300011995 Metagenome Analysis metaSPAdes released by JGI data releasing policy No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.935556 -81.653889 8.25 154092249 537220 40 8 72 14 0.0 Metagenome 3300070992 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Marvin Klemme Range Research Station, Oklahoma, USA - OAES_044-M-20180530-COMP-DNA1 3300070992 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 120095321 317562 131 9 251 19 0.0 Metagenome 3300070374 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_001-O-20200713-COMP-DNA1 3300070374 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 27971594 82594 71 12 123 20 0.0 Metagenome 3300046058 *Microbiome Permanent Draft Halite microbial communities from Atacama Desert, Chile Halite microbial communities from Salar Grande, Atacama Desert, Chile - SG5 Novogene 3300046058 Metagenome Analysis metaWRAP v. 1.3.2 No Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Halite Rock-dwelling (endoliths) Unclassified Halite -20.952 -70.016 152697963 180966 18 2 24 3 0.0 Metagenome 3300026845 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 24 (SPAdes) DOE Joint Genome Institute (JGI) 3300026845 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 48583672 117856 67 0 104 1 SRX4340637 Unrestricted 0.0 Metagenome 3300006409 *Microbiome Permanent Draft Viruses inhabiting crustal fluids of the Juan de Fuca Ridge Flank Viral communities from the deep bioline of CORK borehole observatory U136A, on the Juan de Fuca Ridge Flank, Pacific Ocean - passive in situ filtration, Fraction 20 University of Hawaii 3300006409 Metagenome Analysis Unknown released by JGI data releasing policy No Yes onigro@hawaii.edu Olivia Nigro No Environmental Aquatic Unclassified Marine Unclassified marine 47.750184 -127.740187 16894439 51379 3 1 7 0 0.0 Metagenome 3300008131 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159713063 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008131 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 104525727 151676 90 0 140 0 0.0 Metagenome 3300029786 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 046_3_12_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029786 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 233108768 317158 262 0 333 0 0.0 Metagenome 3300049596 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME26May2004-rr0214 (version 2) DOE Joint Genome Institute (JGI) 3300049596 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 527541889 806185 174 28 238 30 Unrestricted 0.0 Metagenome 3300040113 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dead Lake, Ozarks Complex, AL, USA - DELA_037-M-20160824-COMP-DNA1 Battelle Memorial Institute 3300040113 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 32.54172 -87.80389 12259722 38416 58 11 152 11 0.0 Metagenome 3300042477 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME25Aug2016-rr0702 DOE Joint Genome Institute (JGI) 3300042477 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 687769134 1102364 320 50 460 78 Unrestricted 17.42 Metagenome 3300064939 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 744 in Lacombe, Alberta, Canada - S00JY_0334 Microbiome Insights 3300064939 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.27312777 -113.310707 39049227 59188 38 1 87 3 0.0 Metagenome 3300053098 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere DOE Joint Genome Institute (JGI) 3300053098 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.588162 -123.19393 911381887 1733239 531 140 882 226 Unrestricted 0.0 Metagenome 3300030327 *Microbiome Permanent Draft Freshwater sediment microbial communities from Chandeleur Islands, USA Vegetated sediment core microbial communities from Chandeleur Islands, USA - AVegC5 University of Alabama 3300030327 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Wetlands Freshwater Sediment Vegetated sediment core 29.862806 -88.841194 14390385 36358 35 0 68 0 0.0 Metagenome 3300033891 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-1-D DOE Joint Genome Institute (JGI) 3300033891 Metagenome Analysis spades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0468 343998464 735810 211 4 345 6 SRX8137853, SRX8137852 Unrestricted 0.0 Metagenome 3300000463 *Microbiome Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine sediment microbial community from Union City, CA, USA - Pond 2C Sediment 3 DOE Joint Genome Institute (JGI) 3300000463 Metagenome Analysis released based on JGI ITS Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Oceanic Marine Oil-contaminated sediment Enviromental 37.568817 -122.10315 38427200 111900 95 1 197 1 Unrestricted 0.0 Metagenome 3300029018 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 256_M Beijing Genomics Institute (BGI) 3300029018 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 94047281 129777 90 0 138 0 ERX491030 0.0 Metagenome 3300016642 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Site 230 with 3.0UM filter J. Craig Venter Institute 3300016642 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater -68.4 78.18278 8.31 16434561 39141 26 1 33 1 0.0 Metagenome 3300044296 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Congo - River, Brazzaville, Congo - CONGO_065 DOE Joint Genome Institute (JGI) 3300044296 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater -4.3092 15.2356 428271251 1118357 450 41 797 69 Unrestricted 7.65 Metagenome 3300013377 *Microbiome Permanent Draft Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - effluent_20110722 University of Hong Kong 3300013377 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Drinking water Freshwater Unclassified Aquatic 18305817 28679 7 3 8 7 SRX246996 0.0 Metagenome 3300047182 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2017 MH02_9cm DOE Joint Genome Institute (JGI) 3300047182 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.3577 19.0427 399026960 692180 283 1 547 3 Restricted 25.12 Metagenome 3300011885 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01136 Weill Cornell Medical College 3300011885 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.7 -73.92 50066182 76488 15 0 31 0 SRX823091 0.0 Metagenome 3300041840 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - TR_31_wk_5 DOE Joint Genome Institute (JGI) 3300041840 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9664 -107.059 125051170 368169 247 17 470 18 SRX14809935 Unrestricted 7.34 Metagenome 3300061624 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Caribou Creek Watershed, Alaska, USA - BONA_004-O-20210707-comp-1 DOE Joint Genome Institute (JGI) 3300061624 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Terrestrial soil 65.190675 -147.536694 2238564630 3413661 394 162 582 247 Unrestricted 20.07 Metagenome 3300057158 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2015-0031 DOE Joint Genome Institute (JGI) 3300057158 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.617 -83.009 608771014 1185172 351 142 504 172 Unrestricted 23.53 Metagenome 3300020388 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001063 (ERX555965-ERR599064) CEA Genoscope 3300020388 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com William William; Benjamin Tully Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -33.8785 -73.0369 943557902 2185005 349 3 626 6 0.0 Metagenome 3300029065 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 150_B Beijing Genomics Institute (BGI) 3300029065 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 8667420 8268 4 0 2 0 ERX490959 0.0 Metagenome 3300037618 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - MU_101317 DOE Joint Genome Institute (JGI) 3300037618 Metagenome Analysis metaspades v. 3.13.0 Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.8784 -89.3541 249321353 696039 341 23 625 32 SRX9382426 Unrestricted 7.07 Metagenome 3300014357 *Microbiome Permanent Draft Human fecal and colon tissue microbial communities from Howard University Cancer Center, USA Human colon tissue microbial communities from Howard University Cancer Center, USA - CC0929 HiThru Analytics LLC 3300014357 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Colon mucosa Human colon tissue 31743415 48625 49 3 76 3 SRX1620406 0.0 Metagenome 3300023012 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLU4 DOE Joint Genome Institute (JGI) 3300023012 Metagenome Analysis spades v. 3.11.1 Yes Yes baldrian@biomed.cas.cz; kostelecke.uzeniny@seznam.cz Petr Baldrian; Tomas Vetrovsky No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 49.0427 13.6161 27794427 70510 87 41 139 67 SRX4456467 Unrestricted 14.31 Metagenome 3300071079 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_045-M-20190311-COMP-DNA1 3300071079 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 23505073 74824 113 7 218 10 0.0 Metagenome 3300022416 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1OPP2 JM38 AGRF 3300022416 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 49606648 86319 25 0 44 0 0.0 Metagenome 3300014585 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00535 Weill Cornell Medical College 3300014585 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.7 -73.93 15228180 21451 12 0 16 1 SRX822502 0.0 Metagenome 3300008963 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_B_H2O_MG DOE Joint Genome Institute (JGI) 3300008963 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Pond water 37.4968 -122.1333 308754489 676474 301 14 522 21 SRX3203251 Unrestricted 0.0 Metagenome 3300036482 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C2-9B DOE Joint Genome Institute (JGI) 3300036482 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 103491927 322784 235 3 420 14 SRX8816862 Unrestricted 4.61 Metagenome 3300022671 *Microbiome Permanent Draft Carpinteria Salt Marsh Metagenomes 2014 to 2017 Marine microbialite microbial communities from marsh intertidal zone in Carpinteria, CA, United States - B2 University of California, Irvine 3300022671 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Aquatic Intertidal zone Marine Microbialites Microbialites 34.401 -119.534 10191207 12181 9 1 13 1 0.0 Metagenome 3300033981 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011 DOE Joint Genome Institute (JGI) 3300033981 Metagenome Analysis spades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1041841062 2182492 568 79 920 140 SRX7621639 Unrestricted 10.98 Metagenome 3300025307 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_150m (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025307 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; shallam@interchange.ubc.ca; jkjarett@lbl.gov Ramunas Stepanauskas; Steven Hallam; Jessica Jarett No Environmental Aquatic Lake Freshwater Unclassified freshwater 50.0621 -124.7214 447926438 868624 422 1 678 5 SRX3570897 Unrestricted 15.31 Metagenome 3300033498 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from Middle Island sinkhole, Lake Huron, Michigan, United States - MIS.2017.111B DOE Joint Genome Institute (JGI) 3300033498 Metagenome Analysis spades v. 3.13.0 Yes Yes macgregb@umn.edu; sgrim@umich.edu Barbara MacGregor; Sharon Grim No Environmental Aquatic Lake Freshwater Sediment microbial mat 45.1993 -83.3279 281178297 585198 198 36 310 53 SRX7582716 Unrestricted 26.36 Metagenome 3300070882 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_005-M-20180625-COMP-DNA1 Battelle Memorial Institute 3300070882 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 45.844315 -122.002564 5.05-5.24 4318326 13333 22 3 43 9 0.0 Metagenome 3300028509 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 15 Selected contigs with viral hallmark genes 2 Autonomous University of Barcelona 3300028509 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 1232109 1874 0 0 0 0 0.0 Metagenome 3300005663 *Microbiome Permanent Draft Marine sediment microbial community from Loki's castle, Arctic Ocean Marine sediment microbial community near Loki's castle Uppsala University 3300005663 Metagenome Analysis SPAdes v. 3.0.0 released per Natalia: IMGSUPP-1553 No Yes thijs.ettema@ebc.uu.se, thijs.ettema@ebc.uu.se; NNIvanova@lbl.gov Thijs J. G. Ettema, Thijs J. G. Ettema; Natalia Ivanova Yes 25945739 Environmental Aquatic Oceanic Marine Sediment Marine sediment 73.763167 8.464 7.66 -3283 227356065 337057 63 0 86 0 SRX684858 0.0 Metagenome 3300043269 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from California, United States - Upper Travertine Spring (UTS_S1) (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043269 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Warm (34-42C) Thermal springs Unclassified Desert spring 36.4428 -116.8278 7.4 352832661 561801 167 0 294 0 SRX9167910 Unrestricted 82.71 Metagenome 3300028391 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 24D DOE Joint Genome Institute (JGI) 3300028391 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 244762761 495909 203 29 272 61 SRX5171241 Unrestricted 14.59 Metagenome 3300047460 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_121128.NP1 DOE Joint Genome Institute (JGI) 3300047460 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 746715343 1637313 529 117 869 173 Unrestricted 9.85 Metagenome 3300044540 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from White Clay Creek, Avondale, Pennsylvania, USA - whiteclaycreek2_2019_sw_WHONDRS-S19S_0038 DOE Joint Genome Institute (JGI) 3300044540 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 39.8595 -75.7841 401025151 662303 517 171 803 283 Unrestricted 21.82 Metagenome 3300049414 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MC37 DOE Joint Genome Institute (JGI) 3300049414 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 25828947 68624 97 6 198 1 Unrestricted 38.7 Metagenome 3300019936 *Microbiome Permanent Draft Arctic soil viral communities from Stordalen Mire, Sweden Arctic soil viral communities from Stordalen Mire, Sweden - P+A1 DOE Joint Genome Institute (JGI) 3300019936 Metagenome Analysis spades v. SPAdes version: 3.10.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Terrestrial Palsa Soil Mineral soil core arctic soil 68.3526 19.0147 6203413 15638 20 1 43 3 SRX5627535 Restricted 0.0 Metagenome 3300003907 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-10-D DOE Joint Genome Institute (JGI) 3300003907 Metagenome Analysis Yes Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 64688348 116117 143 18 241 40 SRX2568518 Unrestricted 0.0 Metagenome 3300019771 *Microbiome Permanent Draft Wastewater bacterial communities from palm oil mill effluent (POME) in Pahang, Malaysia - pool1 Wastewater bacterial communities from palm oil mill effluent (POME) in Pahang, Malaysia - pool1 07072017 Malaysian Genomics Resource Centre Berhad 3300019771 Metagenome Analysis Velvet released by JGI data releasing policy No Yes adibah.parman@live.iium.edu.my Adibah Parman No Engineered Wastewater Unclassified Activated Sludge Unclassified wastewater 3.488621 102.015994 15152813 18314 8 2 6 2 0.0 Metagenome 3300029209 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002611-17 Beijing Genomics Institute (BGI) 3300029209 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 139209946 174784 114 0 163 0 0.0 Metagenome 3300055518 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.2W.11 SIP fraction DOE Joint Genome Institute (JGI) 3300055518 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 217466329 382677 231 60 371 95 Unrestricted 16.14 Metagenome 3300044835 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_34CS DOE Joint Genome Institute (JGI) 3300044835 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4367 -106.0519 1223814372 2010629 332 108 582 158 SRX20649546 Unrestricted 14.53 Metagenome 3300045544 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-493 Genome Quebec 3300045544 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 54.008382 -123.135854 881558428 1864527 270 42 397 71 0.0 Metagenome 3300003691 *Microbiome Finished Oil-polluted seafloor microbial communities from the Gulf of Mexico Combined assembly of microbial communities in oil-polluted sediment from the Gulf of Mexico Argonne National Laboratory 3300003691 Metagenome Analysis IDBA_ud 1.1.0 released per PI No Yes kmhandley@uchicago.edu, kim.handley@auckland.ac.nz Kim Handley Yes 28777379 Environmental Aquatic Oceanic Marine Oil-contaminated sediment marine sediment 28.74511 -88.35914 180801331 197733 22 7 26 4 0.0 Metagenome 3300052803 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_TH_060D DOE Joint Genome Institute (JGI) 3300052803 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0586 10.44279 408944356 1079465 324 28 622 42 Unrestricted 8.47 Metagenome 3300059448 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.5C.6 SIP fraction DOE Joint Genome Institute (JGI) 3300059448 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 161893223 311619 137 3 196 5 Unrestricted 0.0 Metagenome 3300017427 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_22AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017427 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 239358378 428603 46 47 47 80 SRX3926899 Unrestricted 9.17 Metagenome 3300011412 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT620_2 DOE Joint Genome Institute (JGI) 3300011412 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8896 -106.9081 233491422 585499 371 31 721 61 SRX3539183 Unrestricted 0.0 Metagenome 3300042542 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Sep2003-rd0175 DOE Joint Genome Institute (JGI) 3300042542 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 864356632 1379551 311 49 442 53 Unrestricted 17.1 Metagenome 3300035037 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B3.5_Sample3.Rodeo5.Well1209 DOE Joint Genome Institute (JGI) 3300035037 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 374140952 632159 289 0 495 0 SRX8353222 Unrestricted 26.36 Metagenome 3300060439 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210608_12_09 DOE Joint Genome Institute (JGI) 3300060439 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 651485385 948025 284 212 369 265 Unrestricted 26.18 Metagenome 3300029929 *Microbiome Permanent Draft Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong - Treated_water_201207 University of Hong Kong 3300029929 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Drinking water Freshwater Unclassified Drinking water treatment plant 9891232 15802 7 14 20 17 SRX390519 0.0 Metagenome 3300003227 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-A DOE Joint Genome Institute (JGI) 3300003227 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 297415 995 16 0 27 4 SRX2575550 Unrestricted 0.0 Metagenome 3300013144 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100541 University of Pennsylvania 3300013144 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 11963094 25824 16 4 29 6 SRX756213 0.0 Metagenome 7000000662 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 765074482 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000662 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 5855081 10631 0 0 0 0 SRX024183 0.0 Metagenome 2067725003 *Microbiome Permanent Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil v1 DOE Joint Genome Institute (JGI) 2067725003 Metagenome Analysis Velvet released based on JGI ITS No Yes janet.jansson@pnnl.gov Janet Jansson Yes 30158906 Environmental Terrestrial Unclassified Soil Grasslands Soil 43.303333 -89.3325 6.8 123787058 337861 42 0 88 0 Unrestricted 0.0 Metagenome 3300007122 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763982056 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007122 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 83558463 139238 69 1 82 3 0.0 Metagenome 3300005710 *Microbiome Permanent Draft Freshwater microbial communities from Lake Kinneret, Israel Aquatic microbial communities from Lake Kinneret, Israel - sample 8 Macrogen 3300005710 Metagenome Analysis Unkonwn No Yes beja@tx.technion.ac.il Beja O No Environmental Aquatic Lentic Freshwater Unclassified Freshwater 32.7872 35.6176 36738 33 1 0 1 0 0.0 Metagenome 3300070609 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_004-M-20200708-COMP-DNA1 3300070609 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 88094467 235415 144 33 246 55 0.0 Metagenome 3300001117 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP2098 DOE Joint Genome Institute (JGI) 3300001117 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 14.53 -118.77 71695887 158922 57 0 91 1 SRX1982386 Unrestricted 0.0 Metagenome 3300036815 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in New South Wales, Australia - Pe_3 DOE Joint Genome Institute (JGI) 3300036815 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil -33.6 150.0 1284506521 2142123 315 59 543 98 SRX8386437 Unrestricted 17.19 Metagenome 3300011121 *Microbiome Permanent Draft Red biofilms microbial communities from calcareous rocks in Diamante Lake, in Catamarca province, Argentina Red biofilms microbial communities from calcareous rocks in Diamante Lake, in Catamarca province, Argentina INDEAR Instituto de Agrobiotecnologia Rosario 3300011121 Metagenome Analysis SPAdes 3.8.0 released by JGI data releasing policy Yes Yes dgkurt@gmail.com Daniel Kurth No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats red biofilm -26.008889 -67.043333 23246593 33641 7 0 11 0 SRX456148 0.0 Metagenome 3300069436 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Mid-Atlantic, VA, USA - SCBI_005-M-20170719-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069436 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89292 -78.1395 7815438 25759 67 3 126 5 0.0 Metagenome 3300013211 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100736 University of Pennsylvania 3300013211 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 26868557 64950 32 4 78 3 SRX756114 0.0 Metagenome 3300043005 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver small intestine microbial communities from Maple Ridge, British Columbia, Canada - Beaver2Small.Intestine1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043005 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Small intestine Digestive system Unclassified small intestine 49.18 -122.54 64753604 109191 21 4 37 7 SRX8344683 Unrestricted 39.0 Metagenome 3300000930 *Microbiome Permanent Draft Freshwater and marine microbial communities from the Columbia River, USA, of estuaries and plumes across salinity gradients Marine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16m University of Maryland 3300000930 Metagenome Analysis released per PI's request No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato Yes 26536246 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Freshwater and marine 46.233 -124.16 501097358 1075152 105 42 293 104 0.0 Metagenome 3300070468 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_003-M-20160823-COMP-DNA1 3300070468 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 14436312 46051 47 11 107 18 0.0 Metagenome 3300056753 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - APS1_5W_T0 DOE Joint Genome Institute (JGI) 3300056753 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 1878198508 2682064 665 86 895 151 Unrestricted 22.39 Metagenome 3300070415 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lajas Experimental Station, Puerto Rico, USA - LAJA_015-M-20171128-COMP-DNA1 3300070415 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 48466190 147832 103 4 201 6 0.0 Metagenome 3300031654 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-200 DOE Joint Genome Institute (JGI) 3300031654 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh sediment 42.722 -70.847 782780637 1418710 612 3 943 8 SRX6465903 Unrestricted 21.46 Metagenome 3300036868 *Microbiome Permanent Draft Soil microbial communities from a coastal freshwater wetland in North Carolina, United States Soil microbial communities from coastal freshwater wetland in North Carolina, United States - 11Pre DOE Joint Genome Institute (JGI) 3300036868 Metagenome Analysis metaspades v. 3.13.0 Yes Yes peraltaa@ecu.edu Ariane Peralta No Environmental Terrestrial Wetlands Soil Unclassified soil 35.8959 -76.1658 606884981 1015730 252 2 412 3 SRX8387716 Unrestricted 14.29 Metagenome 3300020206 *Microbiome Permanent Draft Bras del Port Noviembre 2014 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CR30 November 2014 Cells University of Alicante 3300020206 Metagenome Analysis IDBA_1.1.1 PRE_correction released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hipersaline water 38.1922 -0.5918 141973449 354989 158 0 208 1 0.0 Metagenome 3300010939 *Microbiome Permanent Draft Marine sediment microbial communities from North Pond, Atlantic Mid-Ocean Ridge. Marine sediment microbial communities from North Pond, Atlantic Mid-Ocean Ridge - NP_1384A Marine Biological Laboratory 3300010939 Metagenome Analysis SPAdes released by JGI data releasing policy No Yes rui.zhao@uib.no Rui Zhao No Environmental Aquatic Unclassified Sediment Unclassified marine sediment 22.81 -46.09 69278125 141045 51 10 69 19 0.0 Metagenome 3300015365 *Microbiome Permanent Draft Danish lakes Microbial communities Depth profiles Lake Almind and Hund Freshwater microbial communities from Lake Hund, Silkeborg, Region Midtjylland, Denmark - HUS_14.08.12_1m metaSPAdes assemblies Odense University Hospital 3300015365 Metagenome Analysis metaSPAdes 3.7.1 released by JGI data releasing policy Yes Yes atreusch@biology.sdu.dk Alexander Treusch No Environmental Aquatic Lake Freshwater Unclassified Freshwater 56.04 9.54 6.4 30350077 95534 26 12 52 14 0.0 Metagenome 3300047161 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Sediment-water slurry microbial communities from hot spring in Yellowstone National Park, WY, USA - Buffalo_pool_control_inc_2 DOE Joint Genome Institute (JGI) 3300047161 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Sediment-water slurry 44.5324 -110.7974 185822860 298172 87 2 155 1 Restricted 321.29 Metagenome 3300039968 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 026B_R1 University of Maryland 3300039968 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.22338333 25.02272222 19669457 37391 27 1 47 3 0.0 Metagenome 3300000634 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 01OCT2007 epilimnion DOE Joint Genome Institute (JGI) 3300000634 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300027648 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027648 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 441167528 936442 182 24 404 28 SRX3312034 Unrestricted 0.0 Metagenome 3300026530 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_13_20cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026530 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 602045864 1132969 532 21 999 24 SRX2728428 Unrestricted 0.0 Metagenome 3300027356 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage D2F04 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027356 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 41611954 44138 53 0 48 0 SRX3195128 Unrestricted 0.0 Metagenome 3300031950 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65 DOE Joint Genome Institute (JGI) 3300031950 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5341 -110.798 639392067 1316877 346 0 528 1 SRX6411876 Unrestricted 111.6 Metagenome 3300039048 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample44 King Abdulaziz City for Science and Technology (KACST) 3300039048 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 27.53 34.3 28855287 61570 45 0 99 0 SRX1097613 0.0 Metagenome 3300042784 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_11_5 NMDC pilot DOE Joint Genome Institute (JGI) 3300042784 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 14307355 20588 28 9 38 12 SRX2924867 0.0 Metagenome 3300022594 *Microbiome Permanent Draft Thermokarst lakes Summer vs Winter Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S1 Laval University 3300022594 Metagenome Analysis IDBA-UD 1.1 released by Adrien Vigneron No Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 55.1491 -77.4866 271777826 573234 333 33 528 54 0.0 Metagenome 3300041489 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover leaf microbial community from Lincoln, Canterbury, New Zealand - WCL18_9 MetaG AgResearch, New Zealand, Mosgeil 3300041489 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 500493365 579989 65 140 173 102 0.0 Metagenome 3300043159 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_4 (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043159 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 579581120 965205 115 4 220 10 SRX9140446 Unrestricted 36.7 Metagenome 3300039915 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_054-M-20160823-COMP-DNA1 Battelle Memorial Institute 3300039915 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 21932922 61902 63 12 111 12 0.0 Metagenome 3300004806 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300004806 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 1066298528 2440822 775 127 1236 236 SRX2518428 Unrestricted 0.0 Metagenome 3300015318 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_22AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015318 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 166323135 319000 95 129 147 218 SRX3925859 Unrestricted 6.75 Metagenome 3300050186 *Microbiome Permanent Draft Lab enriched KB-1 culture virl communities from University of Toronto, Ontario, Canada Lab enriched KB-1 culture virl communities from University of Toronto, Ontario, Canada - TCE-MeOH University of Toronto 3300050186 Metagenome Analysis Custom JGI assembly. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Microbial Unclassified Bacteria Unclassified Lab enriched KB-1 culture 43.6587 -79.3955 17142400 29075 17 0 39 0 SRX10994675 0.0 Metagenome 3300060357 *Microbiome Permanent Draft Soil microbial communities from Blodgett Forest Research Station, California, USA Soil microbial communities from Blodgett Forest Research Station, California, USA - BWE201406033H8090 DOE Joint Genome Institute (JGI) 3300060357 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.912 -120.6612 4816304761 7983385 1100 72 2034 114 Unrestricted 33.8 Metagenome 3300025592 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_150m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025592 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 323874496 616597 217 20 314 31 Unrestricted 0.0 Metagenome 3300045782 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - S2-R1-A DOE Joint Genome Institute (JGI) 3300045782 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3571 19.051 134718705 398183 230 49 427 111 Unrestricted 5.86 Metagenome 3300012137 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT560_2 DOE Joint Genome Institute (JGI) 3300012137 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9229 -106.9511 105322013 256338 221 10 532 22 SRX3368952 Unrestricted 0.0 Metagenome 3300049730 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P15SSC1_190913_f DOE Joint Genome Institute (JGI) 3300049730 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 724348206 1196971 285 1 468 4 SRX20650862 Unrestricted 0.0 Metagenome 3300060585 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210530_03_09 DOE Joint Genome Institute (JGI) 3300060585 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 769887756 1082108 143 74 197 123 Unrestricted 17.76 Metagenome 3300007818 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus leukodermatus Group 1 BERMUDA.2 DOE Joint Genome Institute (JGI) 3300007818 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 229851401 344439 24 9 35 18 SRX2711328 Unrestricted 0.0 Metagenome 7000000723 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human palatine tonsils microbial communities from NIH, USA - visit 1, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000723 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Tonsils Lymphatic system Palatine/Faucial Human 8092526 19105 0 0 0 0 SRX024900 0.0 Metagenome 3300026829 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A3-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300026829 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 35675874 118536 90 2 191 7 SRX2576226 Unrestricted 0.0 Metagenome 3300035226 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P4_June_2010_500m DOE Joint Genome Institute (JGI) 3300035226 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 48.65 -126.6666 676162105 1687203 518 65 825 79 SRX8189263 Unrestricted 15.9 Metagenome 3300008714 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human attached/keratinized gingiva microbial communities from NIH, USA - visit 1, subject 763577454 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008714 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Oral cavity Digestive system Attached/Keratinized gingiva Human 46456245 66475 45 0 56 0 0.0 Metagenome 3300038606 *Microbiome Permanent Draft Oyster larvae and tank water microbial communities from oyster tank in Dauphin Island, Alabama, USA Water microbial communities from oyster tank in Dauphin Island, Alabama, USA - 124W U.S. Food and Drug Administration 3300038606 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Aquaculture Unclassified Water 30.25 -88.11 31276274 59552 50 0 63 0 0.0 Metagenome 3300001506 *Microbiome Permanent Draft Human axilla skin microbial communities from the University of Liverpool, UK Human axilla skin microbial communities from the University of Liverpool, UK - AX15 3300001506 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Host-associated Mammals: Human Skin Integumentary system Axilla/Armpit Human axilla skin 53.3484 -3.009 16576938 37504 40 2 70 9 0.0 Metagenome 3300023020 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-301 DOE Joint Genome Institute (JGI) 3300023020 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Unclassified Plant litter Unclassified leaf litter 40.2526 -123.026 67965604 131353 25 15 49 22 SRX4392431 Unrestricted 62.49 Metagenome 3300009164 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG DOE Joint Genome Institute (JGI) 3300009164 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 48.2311 -71.2508 1139277327 2199069 623 88 955 138 SRX2996437 Unrestricted 0.0 Metagenome 3300002432 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP21-I2 3300002432 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300005434 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG DOE Joint Genome Institute (JGI) 3300005434 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.4774 -85.451 4003641639 10894879 2722 121 4765 261 SRX2745042 Unrestricted 0.0 Metagenome 3300070861 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from KU Field Station, Kansas, USA - UKFS_044-M-20180813-COMP-DNA1 3300070861 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 11948686 38658 63 5 107 3 0.0 Metagenome 3300024509 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepC_8d DOE Joint Genome Institute (JGI) 3300024509 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 206399498 441507 197 18 310 21 SRX4547353 Unrestricted 13.19 Metagenome 3300007865 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 158458797 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007865 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 3185618 3958 4 0 6 0 SRX023593, SRX023594 0.0 Metagenome 3300045899 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from the Sylvan Springs Area, Yellowstone National Park, WY, United States - MSUNE_S_02 University of Wisconsin, Madison 3300045899 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.69893 -110.76843 69158569 104234 44 4 50 6 0.0 Metagenome 3300011166 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway plastic -P00358 Weill Cornell Medical College 3300011166 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Plastic surface city subway plastic 40.54 -74.16 29172777 44076 25 0 42 0 SRX822330 0.0 Metagenome 3300011639 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01055 Weill Cornell Medical College 3300011639 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.68 -73.95 28887962 43999 16 0 19 0 SRX823017 0.0 Metagenome 3300038530 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_041 - TARA_R100000455 CEA Genoscope 3300038530 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine 14.6059 69.9776 253335524 558897 42 0 71 0 0.0 Metagenome 3300022578 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 7 Selected contigs with viral hallmark genes Autonomous University of Barcelona 3300022578 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 4173712 5869 0 0 0 0 0.0 Metagenome 3300012914 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2 DOE Joint Genome Institute (JGI) 3300012914 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 842170017 2114525 853 82 1586 165 SRX3297567 Unrestricted 4.13 Metagenome 3300042436 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 DOE Joint Genome Institute (JGI) 3300042436 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.201 -97.9447 714233752 1826974 655 65 1321 93 Unrestricted 6.5 Metagenome 3300043032 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B6.5_Sample6.Rodeo5.Well1210 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043032 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 75321051 129875 100 0 157 1 SRX8356120 Unrestricted 134.32 Metagenome 3300014620 *Microbiome Permanent Draft Human bile duct microbial communities from gallstone patients in Hangzhou, China Human bile duct microbial communities from gallstone patients in Hangzhou, China - C3_bile Beijing Institution of Radiation Medicine 3300014620 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Biliary tract Digestive system Bile ducts: Bile Human bile duct 9964714 14856 8 10 9 4 SRX957040, SRX957027 0.0 Metagenome 7000000171 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 706846339 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000171 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 203207770 302498 0 0 0 0 0.0 Metagenome 3300001630 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF037 DOE Joint Genome Institute (JGI) 3300001630 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 4380169 15282 23 1 28 4 SRX2014388 Unrestricted 0.0 Metagenome 3300020041 *Microbiome Permanent Draft Freshwater viral communities from Chicago Sanitary Ship Canal, USA Freshwater viral communities from Harlem, Illinois, USA - 2 University of Illinois-Urbana Champaign 3300020041 Metagenome Analysis SPADES v3.10.1 released by JGI data releasing policy No Yes wtliu@illinois.edu Wen-Tso Liu No Environmental Aquatic River Freshwater Unclassified Freshwater 41.8 -87.8025 36429264 85461 1 0 5 0 0.0 Metagenome 3300039362 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 582_B Beijing Genomics Institute (BGI) 3300039362 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 7524368 7986 5 0 8 0 ERX491233 0.0 Metagenome 3300029722 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37206 Beijing Genomics Institute (BGI) 3300029722 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 93404398 125481 78 0 101 0 0.0 Metagenome 3300044802 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Soil microbial communities from peatland in Alberta, Canada - SB-91-mossy 20-30 cm DOE Joint Genome Institute (JGI) 3300044802 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4732 -114.8724 512281969 842078 280 8 448 15 Unrestricted 12.95 Metagenome 3300006013 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_NADW_ad_2500m_LV_B DOE Joint Genome Institute (JGI) 3300006013 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 785887963 2174608 868 33 1559 75 SRX2779515 Unrestricted 0.0 Metagenome 3300005786 *Microbiome Permanent Draft Deep-sea sediment bacterial and archaeal communities Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten I Center for Biotechnology (CeBiTec), Bielefeld Univeristy 3300005786 Metagenome Analysis Idba_ud 1.1.1 released per JGI data release policy No Yes jrapp@mpi-bremen.de Josephine Rapp No Environmental Aquatic Oceanic Marine Sediment sediment 78.153207 5.975413 16587219 33334 37 2 55 7 0.0 Metagenome 3300069542 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Jornada LTER, Desert Southwest, NM, USA - JORN_006-M-20170808-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069542 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Desert Terrestrial soil 32.59068 -106.84254 8004926 24466 45 1 70 1 0.0 Metagenome 3300049038 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - D14_A_BS (version 2) DOE Joint Genome Institute (JGI) 3300049038 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 273044069 602930 449 17 1005 22 Unrestricted 0.0 Metagenome 3300038829 *Microbiome Permanent Draft Comammox microbial communities from various environments and locations in Europe Biofilm microbial communities from water well in Wolfenbuttel, Germany - GWW_HP_F1 Aalborg University 3300038829 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Water well Deep subsurface Unclassified Biofilm 52.148855 10.542752 527329764 900182 296 10 481 16 0.0 Metagenome 3300061719 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 DOE Joint Genome Institute (JGI) 3300061719 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 14.75 -16.85 760755153 1294236 330 44 627 47 Restricted 0.0 Metagenome 3300013813 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Human oral microbial communities from various locations - University of British Columbia - SCG35 University of British Columbia 3300013813 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Unclassified Human oral 1225796 3132 4 0 4 0 SRX143144 0.0 Metagenome 3300038454 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Sediment microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_East_1 DOE Joint Genome Institute (JGI) 3300038454 Metagenome Analysis metaspades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Wetlands Marine Sediment sediment 26.502 -80.2225 1852537766 2821519 691 11 1041 15 SRX9406207 Unrestricted 13.25 Metagenome 3300028461 *Microbiome Permanent Draft Wastewater microbial community from ANAMMOX bioreactor in Ghent University, Belgium Wastewater microbial community from ANAMMOX bioreactor in Ghent University, Belgium - Thermophilic-1 Baseclear 3300028461 Metagenome Analysis IDBA-UD v. 1.1.3 released by JGI data releasing policy No Yes josemaria.carvajalarroyo@ugent.be Jose Maria Carvajal Arroyo No Engineered Bioreactor Sludge Anaerobic Unclassified Wastewater 51.054 3.71 7.6 141205033 196540 95 1 148 2 0.0 Metagenome 3300047390 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from St. Lawrence River, NewYork, USA - NASQAN2015_031 DOE Joint Genome Institute (JGI) 3300047390 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 225291460 506284 179 16 327 36 Unrestricted 52.76 Metagenome 3300037511 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Soil microbial communities from Duke University greenhouse, North Carolina, United States - YS_N_2 wSuillus Nitrogen DOE Joint Genome Institute (JGI) 3300037511 Metagenome Analysis metaspades v. 3.13.0 Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Greenhouse Soil Unclassified soil 36.0 -78.0 1575362206 2768818 766 77 1323 105 SRX9172771 Unrestricted 14.27 Metagenome 3300046522 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere DOE Joint Genome Institute (JGI) 3300046522 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5875 -123.1932 732770674 1113120 291 51 412 86 Unrestricted 20.44 Metagenome 3300021172 *Microbiome Permanent Draft Wetland sediment microbial communities from Dorn Creek Dane County, Wisconsin, USA, enriched under anaerobic Fe-reducing conditions Wetland sediment microbial communities from Wisconsin, USA, enriched under anaerobic conditions - 9-14AB University of Wisconsin, Madison 3300021172 Metagenome Analysis SPAdes 3.10.0 released by JGI data releasing policy Yes Yes jmejia@wisc.edu Jacqueline Mejia No Environmental Aquatic Wetlands Freshwater Sediment Wetland Sediment 43.144933 -89.471218 835258282 2043201 369 11 667 10 0.0 Metagenome 3300042108 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lake Yojoa, Honduras - Yojoa_01_2020_B_hypo (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300042108 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Lake Freshwater Unclassified Freshwater 14.8084 -87.9952 1390270869 2238681 289 121 503 180 Unrestricted 13.37 Metagenome 3300037837 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI151_2019_mar_10m DOE Joint Genome Institute (JGI) 3300037837 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 372076424 806627 317 156 478 266 SRX9402700 Unrestricted 12.44 Metagenome 2140918023 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3 v6 (version 6) DOE Joint Genome Institute (JGI) 2140918023 Metagenome Analysis Velvet released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 52031674 88471 27 2 47 0 Unrestricted 0.0 Metagenome 3300008292 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 159207311 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008292 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 1450346 4105 5 0 7 0 SRX023065, SRX023064, SRX024698, SRX024699 0.0 Metagenome 3300000158 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 54 02/08/11 100m DOE Joint Genome Institute (JGI) 3300000158 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 148206261 313803 116 4 259 6 Unrestricted 0.0 Metagenome 2065487011 *Microbiome Permanent Draft Human fecal microbial communities from Baylor College of Medicine, Texas, USA, mock community Human fecal microbial communities from Baylor College of Medicine, Texas, USA, mock community - Mock Even Illumina 2009 Velvet Baylor College of Medicine 2065487011 Metagenome Analysis released per JGI data release policy No Yes xqin@bcm.tmc.edu Xiang Qin No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 29.7 -95.38 43556919 51212 87 0 146 0 0.0 Metagenome 2042536000 *Microbiome Permanent Draft Marine microbial communities from the Landsort deep, Baltic Sea 400 m water depth Soedertoern University 2042536000 Metagenome Analysis Newbler released per JGI data release policy No Yes petter.thureborn@sh.se Petter Thureborn No Environmental Aquatic Oceanic Marine Aphotic zone Marine 58.58333333 18.23333333 120877052 312067 100 0 196 0 0.0 Metagenome 3300002290 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP12-I3 3300002290 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300047672 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 soil DOE Joint Genome Institute (JGI) 3300047672 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.588158 -123.192616 6.72 349935517 651936 337 16 554 40 Unrestricted 22.36 Metagenome 3300025254 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025254 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 202483895 272057 79 0 101 0 SRX2770682 Unrestricted 0.0 Metagenome 3300008645 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763496533 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008645 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 135064643 198883 108 0 126 1 0.0 Metagenome 3300005065 *Microbiome Permanent Draft Mud volcano microbial communities from Taiwan Mud volcano microbial communities from Taiwan - LGH03C4 National Taiwan University 3300005065 Metagenome Analysis non-assemble released per JGI data release policy No Yes cerves@gmail.com Tzu-Hsuan Tu No Environmental Terrestrial Unclassified Volcanic Unclassified Mud volcano 0 0 0 0 0 0 0.0 Metagenome 3300036426 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T-25.r2 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036426 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 56647995 101629 50 10 73 9 SRX4550060, SRX7705821 Unrestricted 0.0 Metagenome 7000000056 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 604812005 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000056 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 6376998 14218 0 0 0 0 0.0 Metagenome 3300034796 *Microbiome Permanent Draft Sediment microbiome project Sediment microbial communities from wetland pond in Xixi Nat. Park in Hangzhou, Zhejiang, China - 10 Beijing Genomics Institute (BGI) 3300034796 Metagenome Analysis megahit v. 1.1.3 released by JGI data releasing policy No Yes 17826834892@163.com wang binhao No Environmental Aquatic Pond Freshwater Sediment sediment 30.268 120.04 171884807 238505 72 5 120 5 0.0 Metagenome 3300040455 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_004-M-34-37-20130709-GEN-DNA1 Argonne National Laboratory 3300040455 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 3578062 10212 28 2 49 4 ERX2134003 0.0 Metagenome 3300022849 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T100 DOE Joint Genome Institute (JGI) 3300022849 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 158976827 249134 56 3 76 6 SRX4415316, SRX7705691 Unrestricted 0.0 Metagenome 3300002405 *Microbiome Permanent Draft Earthworm egg capsule microbial community from the University of Washington, USA Earthworm egg capsule microbial community from the University of Washington, USA - E. fetida Yelm DOE Joint Genome Institute (JGI) 3300002405 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes skdavid@u.washington.edu Seana Davidson No Host-associated Annelida Egg capsule Reproductive system Unclassified Earthworm egg capsule 47.0 -122.0 327507020 809091 133 29 251 37 SRX3327284 Unrestricted 0.0 Metagenome 3300031545 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26 DOE Joint Genome Institute (JGI) 3300031545 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1684130028 4036339 656 12 1185 23 SRX5665783 Unrestricted 11.66 Metagenome 3300011773 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00389 Weill Cornell Medical College 3300011773 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.73 -73.95 31590244 57263 18 0 24 0 SRX822360 0.0 Metagenome 3300012299 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100388 University of Pennsylvania 3300012299 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8064871 16623 14 4 22 7 SRX756269 0.0 Metagenome 3300070826 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_003-M-20180620-COMP-DNA2 3300070826 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 1714063 5641 16 3 28 7 0.0 Metagenome 3300005945 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_AAIW_ad_876m_LV_B DOE Joint Genome Institute (JGI) 3300005945 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 564597220 1615954 710 36 1162 78 SRX2779449 Unrestricted 0.0 Metagenome 3300035450 *Microbiome Permanent Draft STAs constructed wetland biome Wetland sediment microbial communities from Everglades, Florida, USA - STA19-Sample02_1 Merge02 University of Florida 3300035450 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy No Yes ng.hanh24@gmail.com Hanh Nguyen No Environmental Aquatic Wetlands Freshwater Sediment sediment 26.38 -80.51 6.6-8.4 20113082 27613 28 0 64 0 0.0 Metagenome 3300008057 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765560005 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008057 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 21080922 35780 13 0 20 0 0.0 Metagenome 3300022181 *Microbiome Permanent Draft Enriched cultures of PCE-dechlorinating microbial communities from Ithaca, New York, USA Enriched culture of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1 DOE Joint Genome Institute (JGI) 3300022181 Metagenome Analysis spades v. 3.11.1-check Yes Yes rer26@cornell.edu Ruth Richardson No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified defined medium 42.4447 -76.485 376029271 518002 388 0 456 0 SRX4038469 Unrestricted 86.94 Metagenome 3300028815 *Microbiome Permanent Draft Deep ocean water column microbial communities from Yap Trench, western Pacific Ocean Seawater microbial communities from Yap Trench, western Pacific Ocean - 37I-Yap-CTD02-1000m 2000bp_Newsun Novogene 3300028815 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Ocean trench Marine Unclassified seawater 9.87 138.5 115359917 129798 43 0 55 2 0.0 Metagenome 3300045967 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P35SSC1_190914_f DOE Joint Genome Institute (JGI) 3300045967 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 806428070 1219719 236 0 397 2 SRX20650186 Unrestricted 11.54 Metagenome 3300014924 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS856 IDBA reassembly (rename) Marine Biological Laboratory 3300014924 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow marine hydrothermal vent 6.66 62872978 81150 18 0 29 0 0.0 Metagenome 3300012610 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100645 University of Pennsylvania 3300012610 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17522113 43357 14 1 25 0 SRX756449 0.0 Metagenome 3300006561 *Microbiome Finished Investigation of Black Sea water bacterial metagenome Marine microbial communities from the Black Sea in Odessa region - Od_1 Hellenic Centre for Marine Research (HCMR) 3300006561 Metagenome Analysis idba_hybrid Released per Oleksandra Bobrova (Nov 20, 2015) No Yes o.bobrova@onu.edu.ua Aleksandra Bobrova No Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Marine 46.35116 30.5519 8.8 22413229 75560 19 5 47 28 0.0 Metagenome 3300001934 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Estuary microbial communities from Chesapeake Bay, Maryland, USA - MOVE858 J. Craig Venter Institute (JCVI) 3300001934 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine 38.133335 -76.38333 8669668 18293 0 0 0 0 0.0 Metagenome 3300045047 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - DOSP14-9-18-19 DOE Joint Genome Institute (JGI) 3300045047 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.043 -120.6902 314000616 849000 419 30 772 50 Restricted 7.41 Metagenome 3300027764 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027764 Metagenome Analysis spades v. 3.11.1 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 632671912 1539592 402 43 665 115 SRX2565049 Unrestricted 0.0 Metagenome 3300037324 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Extra Lake-3 #415 DOE Joint Genome Institute (JGI) 3300037324 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4417 78.2819 352118754 636858 127 48 149 91 SRX9173489 Unrestricted 19.09 Metagenome 3300002546 *Microbiome Permanent Draft Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland, that are autotrophic Deep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/9 DOE Joint Genome Institute (JGI) 3300002546 Metagenome Analysis Yes Yes rizlan.bernier-latmani@epfl.ch Rizlan Bernier-Latmani Yes 27739431 Environmental Aquatic Groundwater Deep subsurface Porewater Deep subsurface 47.379 7.1648 135800316 237611 158 5 232 8 SRX957916 Unrestricted 0.0 Metagenome 3300037751 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_070717_75_105_jgi DOE Joint Genome Institute (JGI) 3300037751 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2091304509 3283894 834 6 1342 10 SRX9162486 Unrestricted 13.62 Metagenome 3300037063 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 S-1-D DOE Joint Genome Institute (JGI) 3300037063 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 902567645 1619643 301 19 489 33 SRX8149564 Unrestricted 14.56 Metagenome 3300035534 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B2.1_Sample2.Rodeo1.Well667 DOE Joint Genome Institute (JGI) 3300035534 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 174156079 279886 152 0 237 0 SRX8349919 Unrestricted 75.03 Metagenome 3300013336 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100569 University of Pennsylvania 3300013336 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 10753552 26061 16 4 32 3 SRX756185 0.0 Metagenome 3300002619 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A3-11 DOE Joint Genome Institute (JGI) 3300002619 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 179507 612 22 0 50 1 SRX1991133 Unrestricted 0.0 Metagenome 7000000588 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 764083206 replicate 2 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000588 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 1514236 2945 0 0 0 0 SRX024089 0.0 Metagenome 3300014204 *Microbiome Permanent Draft Leachate and groundwater microbial communities from a municipal landfill and adjacent aquifer in Southern Ontario, Canada Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 64-88 metaG DOE Joint Genome Institute (JGI) 3300014204 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes laura.hug@uwaterloo.ca Laura Hug No Engineered Solid waste Unclassified Landfill Unclassified landfill leachate 43.442 -80.577 2297043378 4947135 2375 3 3935 15 SRX3574636 Unrestricted 9.15 Metagenome 3300070263 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lyndon B. Johnson National Grassland, Texas, USA - CLBJ_040-M-20190415-COMP-DNA1 3300070263 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 97764 343 6 0 6 0 0.0 Metagenome 3300028868 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E2_3 DOE Joint Genome Institute (JGI) 3300028868 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 706048762 1975136 877 55 1449 121 SRX5799068 Unrestricted 0.0 Metagenome 3300025252 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP2633 (SPAdes) DOE Joint Genome Institute (JGI) 3300025252 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Unclassified Marine Unclassified Deep ocean 20.0 -52.63 120013549 211675 124 15 183 21 SRX1981969 Unrestricted 0.0 Metagenome 3300028777 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N1_3 DOE Joint Genome Institute (JGI) 3300028777 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 536906562 1411866 530 30 974 48 SRX5357441 Unrestricted 0.0 Metagenome 3300017776 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 17 SPOT_SRF_2010-11-23 DOE Joint Genome Institute (JGI) 3300017776 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 470647679 1084928 108 68 155 132 SRX7207125, SRX7207126 Unrestricted 0.0 Metagenome 3300017931 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100 DOE Joint Genome Institute (JGI) 3300017931 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 773919335 1415994 428 4 736 6 SRX3960249 Unrestricted 15.56 Metagenome 3300005290 *Microbiome Permanent Draft Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan State University, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) DOE Joint Genome Institute (JGI) 3300005290 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Miscanthus rhizosphere 42.406189 -85.40016 1848353117 4716021 1977 26 3682 73 Unrestricted 0.0 Metagenome 3300061137 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IF8SW no PMA treatment Jet Propulsion Laboratory, California Institute of Technology 3300061137 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 90489313 133442 23 14 28 27 SRX2249346, SRX2249347, SRX3808534, SRX3808524 0.0 Metagenome 3300059423 *Microbiome Permanent Draft Sorghum rhizosphere and bulk soil microbial communities from University of Arizona Maricopa Agricultural Center, AZ, USA Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 DOE Joint Genome Institute (JGI) 3300059423 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes laurameredith@email.arizona.edu Laura Meredith No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 33.07735 -111.974819 294892543 804743 494 19 934 23 Unrestricted 6.58 Metagenome 3300032261 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300032261 Metagenome Analysis spades v. 3.13.0 Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Unclassified Soil 18.321 -65.8172 7880397643 16763784 1817 65 3008 129 SRX5635108, SRX3604195 Unrestricted 0.0 Metagenome 3300000419 *Microbiome Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Bog Site B4 v3 (version 3) DOE Joint Genome Institute (JGI) 3300000419 Metagenome Analysis Velvet released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300046103 *Microbiome Permanent Draft Seawater and ice microbial communities from Arctic Ocean Seawater microbial communities from Arctic Ocean - MOSAiC PS122_424_425_pool DOE Joint Genome Institute (JGI) 3300046103 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Seawater 87.5953 94.0846 1504950626 2280290 413 262 556 362 Unrestricted 26.07 Metagenome 3300002065 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Galicia, Spain - SA3-P2 J. Craig Venter Institute (JCVI) 3300002065 Metagenome Analysis Released per Alexandra J. Roth Schulze (April 1, 2016) No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface 42.52 -8.82 286829789 1120224 57 28 147 46 0.0 Metagenome 3300005405 *Microbiome Permanent Draft Bioremediated contaminated groundwater microbial communities from North Railroad Avenue plume (NRAP), New Mexico Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample HSE6-05 DOE Joint Genome Institute (JGI) 3300005405 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, NNIvanova@lbl.gov; rebecca.reiss@nmt.edu Natasha Ivanova, Natalia Ivanova; Rebecca Reiss Yes 27980706 Environmental Aquatic Groundwater Deep subsurface Contaminated Bioremediated contaminated groundwater 35.9918 -106.0796 293152712 411300 340 4 477 3 SRX2554406 0.0 Metagenome 3300025849 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025849 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 27054497, 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 754289381 1334845 399 107 478 163 SRX2999992 Unrestricted 0.0 Metagenome 3300002018 *Microbiome Permanent Draft Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease - BBAY61 3300002018 Metagenome Analysis IDBA-UD + SOAPdenovo + GAA released by JGI data releasing policy No Yes t.thomas@unsw.edu.au Torsten Thomas No Host-associated Algae Ectosymbionts Red algae Unclassified Delisea pulchra -33.59 151.13 13943436 63114 9 13 14 20 0.0 Metagenome 3300049773 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_B_4_control DOE Joint Genome Institute (JGI) 3300049773 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 84507719 205743 270 25 515 38 Unrestricted 11.1 Metagenome 3300042989 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Como Creek, Nederland, Colorado, USA - comocreek_2019_sw_WHONDRS-S19S_0026 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300042989 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 40.0349 -105.5439 206698615 349848 371 96 595 150 Unrestricted 31.47 Metagenome 3300015299 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_09MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015299 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 151627897 274165 3 23 6 19 SRX3921978 Unrestricted 10.42 Metagenome 3300048556 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_190731.NP1 DOE Joint Genome Institute (JGI) 3300048556 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 643954224 1363331 345 58 494 88 Unrestricted 13.79 Metagenome 3300010410 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Aquatic microbial communities from North Sea petroleum storage tank - Cell4b Shell Corporation 3300010410 Metagenome Analysis idba-ud released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com; avignero@gmail.com Nicolas Tsesmetzis; Adrien Vigneron No Environmental Aquatic Unclassified Unclassified Unclassified aquatic 60.9 1.8 496831771 1786621 1766 2 9206 11 0.0 Metagenome 3300036590 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8ST15 DOE Joint Genome Institute (JGI) 3300036590 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 218914687 589811 363 29 667 49 SRX8379683 Unrestricted 5.28 Metagenome 3300042655 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Porotermes quadricollis from Region del Maule, Estero Los Robles, Chile - Pq454 Eurofins MWG Operon 3300042655 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut -35.225246 -71.369964 1281785089 1294476 159 31 208 63 0.0 Metagenome 3300014922 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 626_4M Beijing Genomics Institute (BGI) 3300014922 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 65247385 72568 33 0 49 0 ERX491280 0.0 Metagenome 3300000605 *Microbiome Permanent Draft Abyssal marine microbial communities from the Mediterranean Sea Abyssal marine microbial communities from the Mediterranean Sea - kryos-hsr2-ab-cont Fidelity Systems Inc 3300000605 Metagenome Analysis released per JGI data release policy No Yes francesco.smedile@iamc.cnr.it, francesco.smedile14@gmail.com francesco smedile, Francesco Smedile No Environmental Aquatic Oceanic Marine Abyssal plane Abyssal marine 34.93 22.22 0 0 0 0 0 0 0.0 Metagenome 3300025181 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP1241 (SPAdes) DOE Joint Genome Institute (JGI) 3300025181 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -31.16 110.18 36736314 74458 47 12 77 27 SRX1982567 Unrestricted 0.0 Metagenome 3300037403 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_C3 DOE Joint Genome Institute (JGI) 3300037403 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 431937000 923963 221 52 365 82 SRX9087655 Unrestricted 7.13 Metagenome 3300042967 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-417 Genome Quebec 3300042967 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 52.378328 -105.12597 1013385213 2313387 343 42 504 82 0.0 Metagenome 3300027275 *Microbiome Permanent Draft Comparative metagneomics of mesophilic and thermophilic cellulose-adapted consortia Cellulose adapted compost microbial communities from Newby Island Compost Facility, Milpitas, CA, USA - Passage2 60B (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027275 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Solid waste Composting Bio- and green waste (BGW) Unclassified Feedstock adapted compost 37.840898 -122.289614 52774436 68117 69 0 82 0 SRX3782535 Unrestricted 0.0 Metagenome 3300015610 *Microbiome Permanent Draft Wastewater microbial communities from the domestic sewers Wastewater microbial communities from domestic sewers in Singapore - Site E Oct Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300015610 Metagenome Analysis CLC workbench released by JGI data releasing policy No Yes erinscm@nus.edu.sg Charmaine Ng No Engineered Wastewater Unclassified Sewage Unclassified Wastewater 1.28362 103.859825 176785929 253697 30 3 42 3 0.0 Metagenome 3300048088 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere DOE Joint Genome Institute (JGI) 3300048088 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1215 -123.2703 1500714152 2356226 387 163 623 204 Unrestricted 16.23 Metagenome 3300009416 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_1000_biof (PacBio error correction) DOE Joint Genome Institute (JGI) 3300009416 Metagenome Analysis metalrec v. 1.0.2 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 467716430 713070 418 9 540 13 SRX2576714, SRX2576713, SRX2576712, SRX2576711, SRX2576715 Unrestricted 0.0 Metagenome 3300035532 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B1.8_Sample1.Rodeo8.Well662 DOE Joint Genome Institute (JGI) 3300035532 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 196775903 321452 193 0 259 0 SRX8349102 Unrestricted 63.5 Metagenome 3300013791 *Microbiome Permanent Draft Wastewater microbial communities from municipal sewage treatment plants in Nanjing, China Wastewater microbial communities from municipal sewage treatment plant in Nanjing, China - DC_EW_meta Nanjing University 3300013791 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 57898620 147573 67 28 124 72 SRX425459 0.0 Metagenome 3300042047 *Microbiome Permanent Draft Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - A_a4.8 Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042047 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1237 -89.1404 790892869 796134 2 4 4 13 SRX5234797 0.0 Metagenome 3300005546 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG DOE Joint Genome Institute (JGI) 3300005546 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 4835495578 13555352 3485 101 5979 184 SRX2744856 Unrestricted 0.0 Metagenome 3300014202 *Microbiome Permanent Draft Sludge microbial communities from oil sands tailing ponds in Alberta, Canada, bioreactor enrichment Sludge microbial communities from oil sands tailing ponds in Alberta, Canada, bioreactor enrichment - shotgun Stanford University 3300014202 Metagenome Analysis metaSPAdes v10.0; Megahit released by JGI data releasing policy No Yes brian.yu@czbiohub.or Brian Yu No Engineered Bioreactor Marine sediment inoculum Continuous culture sludge 53.526547 -113.530502 611574743 572172 91 8 87 8 0.0 Metagenome 3300009671 *Microbiome Permanent Draft Anaerobic biogas reactor microbial communites from Washington, USA Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1 time_0 SIP DNA DOE Joint Genome Institute (JGI) 3300009671 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes dacb@uw.edu David Beck Yes 28895946 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic biogas reactor 47.6525 -122.3049 892967227 1478839 1259 5 1759 10 SRX2339320 Unrestricted 0.0 Metagenome 3300061686 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0602 Microbiome Insights 3300061686 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 385837725 546651 124 6 174 8 0.0 Metagenome 3300001932 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Moorea, Cooks Bay, Polynesia Archipelagos - GS049 J. Craig Venter Institute (JCVI) 3300001932 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine -17.453056 -149.79889 638416 1194 2 0 0 0 0.0 Metagenome 3300005619 *Microbiome Permanent Draft Macropus eugenii forestomach microbial communities from Canberra, Australia Macropus eugenii forestomach microbial communities from Canberra, Australia - 10206 DOE Joint Genome Institute (JGI) 3300005619 Metagenome Analysis LUCY, PGA Assembler released based on JGI ITS No Yes mark.morrison@csiro.au, chris.mcsweeney@csiro.au Mark Morrison, Chris McSweeney Yes 20668243 Host-associated Mammals Stomach Digestive system Forestomach Macropus eugenii forestomach -35.220544 149.126422 2471295 2339 10 0 10 0 Unrestricted 0.0 Metagenome 3300070700 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_005-M-20170710-COMP-DNA1 3300070700 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 266099347 764876 407 30 809 41 0.0 Metagenome 3300027340 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F06 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027340 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 42779903 52450 55 0 54 0 SRX3195093 Unrestricted 0.0 Metagenome 3300031946 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172 DOE Joint Genome Institute (JGI) 3300031946 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 2744666732 6174917 862 17 1540 48 SRX5820401 Unrestricted 9.77 Metagenome 7000000349 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763759525 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000349 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 99540128 178890 0 0 0 0 0.0 Metagenome 3300027762 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027762 Metagenome Analysis spades v. 3.11.1 Yes Yes mike.wilkins@colostate.edu Michael Wilkins Yes 30086797 Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0991 -99.1044 649274347 1590540 854 36 1525 48 SRX2753787 Unrestricted 0.0 Metagenome 3300018910 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 18 hrs after wetting v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018910 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 353043499 692350 332 14 574 31 0.0 Metagenome 3300037322 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Unnamed +5 Lake #27 DOE Joint Genome Institute (JGI) 3300037322 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.527 78.3042 796547390 1491579 428 76 640 113 SRX9173354 Unrestricted 16.43 Metagenome 3300043213 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_4000m_C2_0cm5cm (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043213 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.1948 -122.0383 129265105 219601 90 4 149 4 SRX9141699 Unrestricted 145.84 Metagenome 3300046311 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_49 DOE Joint Genome Institute (JGI) 3300046311 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 440012824 1161372 1062 315 2029 447 Restricted 0.0 Metagenome 3300042899 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME30Mar2000D8-rr0989 DOE Joint Genome Institute (JGI) 3300042899 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 841568351 1297693 239 85 303 86 Unrestricted 36.36 Metagenome 3300031785 *Microbiome Permanent Draft Comprehensive metagenome and single cell genome sequencing from the open ocean community of North Pacfic Subtropical Gyre, Station ALOHA Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-25_MG DOE Joint Genome Institute (JGI) 3300031785 Metagenome Analysis spades v. 3.12.0 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Unclassified Seawater 22.8367 -158.0236 2900738061 7049814 1266 354 1905 646 SRX5781850 Unrestricted 15.3 Metagenome 3300027623 *Microbiome Permanent Draft Genome and metagenome analysis of marine red algae Porphyra Marine algal microbial communities from Maine, USA - Maine_Asex2 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027623 Metagenome Analysis spades v. 3.11.1 Yes Yes Brawley@maine.edu Susan Brawley No Host-associated Algae Unclassified Red algae Unclassified Marine 44.342 -68.065 513680076 845473 210 8 328 13 SRX2954907 Unrestricted 0.0 Metagenome 3300012912 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2 DOE Joint Genome Institute (JGI) 3300012912 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 762736678 1910238 718 45 1396 80 SRX3298490 Unrestricted 4.14 Metagenome 3300049166 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S17_C_D45 hydrophilic DOE Joint Genome Institute (JGI) 3300049166 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 218996871 355043 195 0 255 0 Unrestricted 66.44 Metagenome 3300043034 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B6.7_Sample6.Rodeo7.Well1132 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043034 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 153853800 288197 160 0 266 0 SRX8356264 Unrestricted 53.13 Metagenome 3300049639 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MG_200917 DOE Joint Genome Institute (JGI) 3300049639 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 369709039 613522 558 0 867 1 Unrestricted 15.81 Metagenome 3300025578 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0.5M (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025578 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu; shaomei.he@gmail.com Katherine McMahon; Shaomei He No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 292593047 578135 169 46 293 84 SRX2518377 Unrestricted 0.0 Metagenome 3300045436 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-642 Genome Quebec 3300045436 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.448187 -123.529102 1128962344 2504016 473 87 757 194 0.0 Metagenome 3300033547 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1 DOE Joint Genome Institute (JGI) 3300033547 Metagenome Analysis spades v. 3.13.0 Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 59.9979 10.7895 148312821 335976 160 52 244 92 SRX7531681 Unrestricted 18.58 Metagenome 3300040187 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_014-O-20160818-COMP-DNA1 Battelle Memorial Institute 3300040187 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 10718005 27433 37 3 49 10 0.0 Metagenome 3300029351 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 009_6_15_stool Institute for Genome Sciences, University of Maryland School of Medicine 3300029351 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 80262720 113714 72 2 120 0 0.0 Metagenome 3300039364 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 224_12M Beijing Genomics Institute (BGI) 3300039364 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 42674859 49894 22 0 44 0 ERX491003 0.0 Metagenome 3300029724 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37191R1 Beijing Genomics Institute (BGI) 3300029724 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 117101221 138936 91 0 121 0 0.0 Metagenome 3300039023 *Microbiome Permanent Draft Cryoconite microbiome from cyroconite holes in Resolute Bay, NU, Canada Cryoconite microbial community from Resolute Bay, Canada - FullCryo McGill University 3300039023 Metagenome Analysis canu v. 1.8 released by JGI data releasing policy No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Aquatic Sea ice Marine Cryoconite Cryoconite 74.44707 -95.0348 1077334084 1712913 1610 588 2040 697 0.0 Metagenome 3300000973 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY93 J. Craig Venter Institute (JCVI) 3300000973 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 637825377 2406355 120 49 309 76 0.0 Metagenome 3300025097 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025097 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -13.003 -80.809 250141497 588014 28 0 34 0 SRX2926261 Unrestricted 0.0 Metagenome 3300069544 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONZ_002-M-20160712-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069544 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.10077 -96.56309 45650616 141872 86 6 194 10 0.0 Metagenome 3300038452 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-1-X1 DOE Joint Genome Institute (JGI) 3300038452 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0474 158783706 255379 43 2 81 5 SRX10078024 Unrestricted 10.46 Metagenome 3300002786 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A3-10 DOE Joint Genome Institute (JGI) 3300002786 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 148660 495 21 0 41 0 SRX1991109 Unrestricted 0.0 Metagenome 3300044804 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Caribou Creek, Fairbanks, Alaska, USA - cariboucreek_2019_sw_WHONDRS-S19S_0051 DOE Joint Genome Institute (JGI) 3300044804 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 64.8556 -147.8055 113284988 195747 286 34 559 75 Unrestricted 29.36 Metagenome 3300034280 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME10Aug2009-rr0048 DOE Joint Genome Institute (JGI) 3300034280 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1753514027 3400784 716 178 1103 278 SRX7621647 Unrestricted 13.76 Metagenome 3300004028 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_CordC_D2 DOE Joint Genome Institute (JGI) 3300004028 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.015896 -122.501663 972836442 2995247 971 14 2035 18 SRX7142164 Unrestricted 0.0 Metagenome 3300028001 *Microbiome Permanent Draft Soil microbial communities from hillslopes of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-1-E_N DOE Joint Genome Institute (JGI) 3300028001 Metagenome Analysis spades v. 3.11.1 Yes Yes laurameredith@email.arizona.edu Laura Meredith No Engineered Artificial ecosystem Soil Mesocosm Unclassified soil 32.5788 -110.8509 19383662 51768 15 0 51 0 SRX5245797 Unrestricted 177.49 Metagenome 3300021174 *Microbiome Permanent Draft Wetland sediment microbial communities from Dorn Creek Dane County, Wisconsin, USA, enriched under anaerobic Fe-reducing conditions Wetland sediment microbial communities from Wisconsin, USA, enriched under anaerobic conditions and in the presence of Ferrihydrite and Hydrogen gas - 11AB University of Wisconsin, Madison 3300021174 Metagenome Analysis SPAdes 3.10.0 released by JGI data releasing policy Yes Yes jmejia@wisc.edu Jacqueline Mejia No Environmental Aquatic Wetlands Freshwater Sediment Wetland Sediment 43.144933 -89.471218 763670859 1728686 354 11 598 35 0.0 Metagenome 3300057003 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E2P_18_20 DOE Joint Genome Institute (JGI) 3300057003 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9927826 -81.4891309 1939378120 2874832 673 5 1068 1 Unrestricted 14.62 Metagenome 3300046524 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere DOE Joint Genome Institute (JGI) 3300046524 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5882 -123.1938 780137265 1149369 185 58 238 65 Unrestricted 22.41 Metagenome 3300008473 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 737052003 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008473 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 11121769 34051 40 0 78 0 0.0 Metagenome 3300045108 *Microbiome Permanent Draft Soil microbial communities from Blodgett Forest Research Station, California, USA Soil microbial communities from Blodgett Forest Research Station, California, USA - BWE201406032C1020_TS DOE Joint Genome Institute (JGI) 3300045108 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.9122 -120.6612 819325927 1424411 336 41 544 54 Unrestricted 14.98 Metagenome 3300040636 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone Northern Range (Frog Rock), Northern Rockies, WY, USA - YELL_052-M-20180711-COMP-DNA1 Battelle Memorial Institute 3300040636 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 44.95348 -110.53914 2452926 7881 37 8 45 12 0.0 Metagenome 3300003115 *Microbiome Permanent Draft Acid mine drainage microbial communities from Los Rueldos abandoned Hg mine in Spain Acid mine drainage microbial communities from Los Rueldos abandoned mercury mine in Spain - Sample B2A Institute of Catalysis, The Higher Council for Scientific Research (CSIC) 3300003115 Metagenome Analysis Made public because these are downloaded from Genbank No Yes mferrer@icp.csic.es Manuel Ferrer Yes 24430486 Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 43.25 -5.7666667 10850070 19390 10 0 18 0 0.0 Metagenome 3300012365 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100332 University of Pennsylvania 3300012365 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 559016 1474 7 1 5 1 SRX756325 0.0 Metagenome 3300030646 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_2 DOE Joint Genome Institute (JGI) 3300030646 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 967668517 2080105 304 30 455 53 SRX5357900 Unrestricted 13.12 Metagenome 3300000632 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 16OCT2007 hypolimnion DOE Joint Genome Institute (JGI) 3300000632 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300027987 *Microbiome Permanent Draft Black smoker hydrothermal vent sediment microbial communities from the Guaymas Basin, Mid-Atlantic Ridge, South Atlantic Ocean Black smoker hydrothermal vent sediment microbial communities from the Guaymas Basin, Mid-Atlantic Ridge, South Atlantic Ocean - BSmoChi-MAR-TVG11 Beijing Genomics Institute (BGI) 3300027987 Metagenome Analysis idba_ud v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Hydrothermal vents Marine Black smokers hydrothermal vents -15.160005 -13.350021 2907801961 3666640 954 29 1343 38 0.0 Metagenome 3300009480 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 10m depth; DNA IDBA-UD Marine Biological Laboratory 3300009480 Metagenome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes jhuber@mbl.edu, jhuber@mbl.edu; jhuber@whoi.edu Huber, Huber; Julie Huber No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 6.9 375967459 855667 310 5 550 14 0.0 Metagenome 3300001225 *Microbiome Permanent Draft Switchgrass rhizosphere microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere microbial communities from Knoxville, Tennessee, USA - 11_joined University of Tennessee 3300001225 Metagenome Analysis released per JGI data release policy No Yes jwang43@utk.edu Jun Wang No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 35.9606 -83.9208 5351985 18386 15 2 33 3 0.0 Metagenome 3300046027 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-463 Genome Quebec 3300046027 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.647232 -124.02279 1159910296 2489541 593 175 944 318 0.0 Metagenome 3300030519 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_3 DOE Joint Genome Institute (JGI) 3300030519 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 1314391379 2646158 505 48 742 83 SRX5799205 Unrestricted 12.11 Metagenome 3300014235 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 265_L1_2014-9-26 San Diego State University 3300014235 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 571136 2027 15 3 25 14 0.0 Metagenome 3300015686 *Microbiome Permanent Draft Microbial communities associated with sugarcane Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 003.2_E09 Universidade Estadual de Campinas 3300015686 Metagenome Analysis Spades released by JGI data releasing policy No Yes scs.rafael@gmail.com Rafael Souza No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere -22.8187222 -47.05896667 9688737 9382 10 0 6 0 0.0 Metagenome 3300025594 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025594 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 330953668 631888 308 53 419 100 SRX2999539 Unrestricted 0.0 Metagenome 3300035505 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - Beaver3Cecum1 DOE Joint Genome Institute (JGI) 3300035505 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.18 -122.54 668075423 1202502 782 15 1137 25 SRX8345852 Unrestricted 10.82 Metagenome 3300045784 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - CP-10A DOE Joint Genome Institute (JGI) 3300045784 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.0477 404751303 797149 152 2 266 8 Unrestricted 8.54 Metagenome 3300002550 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-211 DOE Joint Genome Institute (JGI) 3300002550 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.290565 -156.788622 357149907 754357 386 5 678 9 SRX1990904 Unrestricted 0.0 Metagenome 3300040500 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_051-M-20160822-COMP-DNA1 Battelle Memorial Institute 3300040500 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 3474328 10785 29 3 64 4 0.0 Metagenome 3300012318 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100480 University of Pennsylvania 3300012318 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12629727 32817 21 0 33 3 SRX756518 0.0 Metagenome 3300003168 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Maryland, USA - DAQMD-024 DOE Joint Genome Institute (JGI) 3300003168 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 21354353 43862 43 4 43 13 SRX2770400 Unrestricted 0.0 Metagenome 3300042782 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_10_22 NMDC pilot DOE Joint Genome Institute (JGI) 3300042782 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 29137333 41300 43 0 47 0 SRX2924868 0.0 Metagenome 3300001905 *Microbiome Permanent Draft Contaminated subsurface sediment microbial communities from Dusseldorf, Germany, analyzing toluene degradation Contaminated subsurface sediment microbial communities from Dusseldorf, Germany, analyzing toluene degradation - Fos_Dus_42 3300001905 Metagenome Analysis de novo assembly algorithm of CLC Genomics Workbench released by JGI data releasing policy No Yes emnabouhajja@gmail.com Emna Bouhajja No Environmental Terrestrial Sediment Geologic Unclassified Contaminated subsurface sediment 51.21 6.46 26440 30 0 0 0 0 0.0 Metagenome 3300022592 *Microbiome Permanent Draft Thermokarst lakes Summer vs Winter Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S3 Laval University 3300022592 Metagenome Analysis IDBA-UD 1.1 released by Adrien Vigneron No Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 55.1491 -77.4866 313146304 679555 365 23 520 39 0.0 Metagenome 3300007503 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila suzukii female 3 gut Cornell University 3300007503 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy Yes Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila suzukii female adult gut 42.875296 -77.006403 440603765 478587 4 26 4 43 0.0 Metagenome 3300026452 *Microbiome Permanent Draft Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PU4 DOE Joint Genome Institute (JGI) 3300026452 Metagenome Analysis spades v. 3.11.1 Yes Yes ccraft@indiana.edu Chris Craft No Environmental Aquatic Wetlands Freshwater Sediment sediment 31.3377 -81.4644 121081566 339647 313 7 519 16 SRX4796764 Unrestricted 7.07 Metagenome 3300011730 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00291 Weill Cornell Medical College 3300011730 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.71 -74.01 32293183 52454 27 0 35 0 SRX822264 0.0 Metagenome 3300027049 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 72 (SPAdes) DOE Joint Genome Institute (JGI) 3300027049 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 110067664 266329 118 1 226 3 SRX4341349 Unrestricted 0.0 Metagenome 7000000040 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2 of subject 763759525 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000040 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 108278297 170592 0 0 0 0 0.0 Metagenome 3300006925 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG DOE Joint Genome Institute (JGI) 3300006925 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.51 -76.2 286313580 643013 21 0 24 0 SRX2927703 Unrestricted 0.0 Metagenome 3300006490 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 765560005 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300006490 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 351206 1029 2 0 6 0 SRX024157 0.0 Metagenome 3300008712 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159571453 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008712 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 133330908 153373 111 0 145 0 0.0 Metagenome 3300008278 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764649650 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008278 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 128927574 184978 85 0 109 0 0.0 Metagenome 3300014729 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from two oxygen tension regimens in Lake Washington, USA Freshwater lake sediment microbial communities from high oxygen tension regimen in Lake Washington, USA - HO rep. 1 week 8 - H1_8_WGA University of Washington 3300014729 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 47.631156 -122.254601 18523701 35900 6 0 9 0 0.0 Metagenome 3300032226 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime Ecozone, Canada - Lake 07-030 Genome Quebec 3300032226 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.291223 -66.056773 517873446 1087001 294 67 513 145 0.0 Metagenome 3300020170 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300020170 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 756021394 1795773 461 16 843 33 SRX7208759, SRX7208761, SRX7208760 Unrestricted 21.4 Metagenome 3300043537 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - Rondonia_Pasture_3_A10m DOE Joint Genome Institute (JGI) 3300043537 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.204 -62.774 427200017 1139814 301 7 542 8 Unrestricted 7.27 Metagenome 3300006205 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 765034022 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300006205 Metagenome Analysis SPADES v3.6.1 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 424356 1299 3 0 7 0 SRX025181 0.0 Metagenome 3300035446 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_1_21_6 mgh University of Alberta 3300035446 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 64804151 83102 28 0 41 0 0.0 Metagenome 3300001739 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP-121 DOE Joint Genome Institute (JGI) 3300001739 Metagenome Analysis Yes Yes mbsulli@gmail.com, sacinas@icm.csic.es; mbsulli@gmail.com Matthew Sullivan, Silvia G. Acinas; Matthew Sullivan Yes 27654921 Environmental Aquatic Oceanic Marine Unclassified Deep ocean 10.0693 -99.2557 70489130 158093 61 4 121 6 SRX4924345 Unrestricted 0.0 Metagenome 3300005432 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78 DOE Joint Genome Institute (JGI) 3300005432 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 920869068 2405972 886 102 1508 170 SRX2782314 Unrestricted 0.0 Metagenome 3300041007 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - RDC-3_at_3-4_cm Genome Quebec 3300041007 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.80159 -73.41443 498008874 1332013 783 25 1631 32 0.0 Metagenome 3300056808 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Biomass microbial communities from acid-phase anaerobic digester in WWTP, Madison, WI, USA - 20210811_SampleB (version 2) DOE Joint Genome Institute (JGI) 3300056808 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Sludge Anaerobic digester Unclassified Biomass 43.03331 -89.35633 758457129 800682 590 0 588 0 Unrestricted 15.61 Metagenome 3300027969 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027969 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 48.2311 -71.2508 709871688 1437271 288 37 385 58 SRX2996437 Unrestricted 0.0 Metagenome 3300039649 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA Corn field soil microbial communities from Boone County, Iowa, USA - CC21-LM-July2012 Iowa State University 3300039649 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land Corn field soil 42.01375 -93.783837 59708909 186705 158 14 347 15 0.0 Metagenome 3300009162 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Bulk soil microbial communities from a Populus tree surrounding site in Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2 DOE Joint Genome Institute (JGI) 3300009162 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes pelletierda@ornl.gov Dale Pelletier No Environmental Terrestrial Tree plantation Soil Unclassified Bulk soil 35.8444 -83.9599 4319289642 8579482 1777 47 3043 82 SRX2842010 Unrestricted 0.0 Metagenome 3300002434 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP13-MB 3300002434 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300024971 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 19_HOW5 (SPAdes) DOE Joint Genome Institute (JGI) 3300024971 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 126584582 170721 66 4 87 2 SRX2720157 Unrestricted 0.0 Metagenome 3300043811 *Microbiome Permanent Draft Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA - PH 28 years plot 12 DOE Joint Genome Institute (JGI) 3300043811 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes luizdomeignoz@gmail.com Luiz Domeignoz Horta No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 42.303 -72.1228 2119182305 3438995 367 42 580 79 SRX15792987 Unrestricted 11.98 Metagenome 3300020525 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 05MAR2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020525 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 109556869 217125 84 49 124 70 SRX1989751 Unrestricted 0.0 Metagenome 3300041771 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from the Rocky Mountain Biological Laboratory (RMBL), Gothic, Colorado, United States - 2018WM_1C DOE Joint Genome Institute (JGI) 3300041771 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9595 -106.99 171880836 487888 226 15 437 22 SRX14810481 Unrestricted 8.48 Metagenome 3300011414 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT266_2 DOE Joint Genome Institute (JGI) 3300011414 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9776 -107.0026 257862444 613168 281 32 669 52 SRX3539334 Unrestricted 0.0 Metagenome 3300041936 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from the Rocky Mountain Biological Laboratory (RMBL), Gothic, Colorado, United States - 2009WM_8W DOE Joint Genome Institute (JGI) 3300041936 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9595 -106.99 122860875 378014 231 21 457 44 SRX14811909 Unrestricted 7.44 Metagenome 3300036777 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C1-3B DOE Joint Genome Institute (JGI) 3300036777 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 190468520 581577 385 14 681 15 SRX8816757 Unrestricted 4.84 Metagenome 3300042544 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jun2018-rr0679 DOE Joint Genome Institute (JGI) 3300042544 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 882541096 1401644 344 86 464 108 Unrestricted 18.36 Metagenome 3300049412 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MC21 DOE Joint Genome Institute (JGI) 3300049412 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 40455538 115423 128 1 269 1 Unrestricted 30.89 Metagenome 3300003447 *Microbiome Permanent Draft Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading Marine sediment microbial communities from Douglas Channel, Canada that are oil-degrading - Sample S1-DC01A 3300003447 Metagenome Analysis released per JGI data releasing policy No Yes julie.champagne@cnrc-nrc.gc.ca Julie Champagne No Environmental Aquatic Neritic zone/Coastal water Marine Sediment Marine sediment 53.6667 -129.1333 28687449 106994 45 1 72 0 0.0 Metagenome 3300045542 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from White River, Indiana, USA - NASQAN2011_451 DOE Joint Genome Institute (JGI) 3300045542 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.4897 -87.55 283241762 675915 323 97 571 137 Unrestricted 0.0 Metagenome 7000000664 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 508703490 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000664 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39159249 61612 0 0 0 0 0.0 Metagenome 2022920020 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP20 Bath Lake Vista Annex - Purple-Sulfur Mats v2 (version 2) DOE Joint Genome Institute (JGI) 2022920020 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23761787 Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.96507 -110.71215 6.2-6.3 34156953 60725 466 0 39 0 Unrestricted 0.0 Metagenome 3300027897 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from the University of Notre Dame, USA, of lakes that contribute to methane emissions Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027897 Metagenome Analysis spades v. 3.11.1 Yes Yes sjones20@nd.edu Stuart Jones No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 41.7 -86.23 2284729537 4975396 1564 59 2543 104 SRX2576532 Unrestricted 0.0 Metagenome 3300028246 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_18SEP2017_LD1 DOE Joint Genome Institute (JGI) 3300028246 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 69208979 149239 67 65 102 102 SRX5345917 Unrestricted 15.52 Metagenome 3300007124 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159268001 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007124 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 141297932 188868 95 0 128 0 0.0 Metagenome 3300039107 *Microbiome Draft Great Salt Lake Microbialite Metagenome Saline microbialite mat community from Great Salt Lake, Utah, United States - GSL_SA_MAT1 University of Wisconsin, Madison 3300039107 Metagenome Analysis Spades v. 3.10.0 released by JGI data releasing policy No Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Saline Non-marine Saline and Alkaline Microbial mats Microbial mat 41.0639 -112.2487 354035948 498150 197 6 290 9 0.0 Metagenome 3300009825 *Microbiome Permanent Draft Wastewater microbial communities from Base Mine Lake, Ft. McMurray, Alberta, Canada - Surface, May 2015 Hot spring soil microbial communities from Dewar Creek, Kimberly, BC, Canada - 2010, Sample 6 University of Calgary 3300009825 Metagenome Analysis SPAdes Genome Assembler v.3.5.0 released per JGI data release policy No Yes dunfield.bio@gmail.com Dunfield Laboratory No Environmental Aquatic Sediment Thermal springs Unclassified hot spring soil 49.9543667 -116.5155 7.46 41844300 55599 51 1 30 0 0.0 Metagenome 3300002710 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A4a-12 DOE Joint Genome Institute (JGI) 3300002710 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 414370 1387 26 1 37 5 SRX1991273 Unrestricted 0.0 Metagenome 3300013142 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100425 University of Pennsylvania 3300013142 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 6221909 18766 14 0 26 0 SRX756573 0.0 Metagenome 3300001673 *Microbiome Permanent Draft Wastewater treatment plant microbial communities from Luxembourg NGK4nonrrna 3300001673 Metagenome Analysis idba-tran released by JGI data releasing policy No Yes magdalena.calusinska@list.lu Magdalena Calusinska No Engineered WWTP Unclassified Wastewater Unclassified Wastewater treatment plant 49.669961 6.038675 7.61 5621888 20855 80 65 687 210 0.0 Metagenome 3300001338 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW36 contaminated, 6.7 m DOE Joint Genome Institute (JGI) 3300001338 Metagenome Analysis No Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.292222 -73.604444 14131294 19756 45 0 43 2 Unrestricted 0.0 Metagenome 3300028590 *Microbiome Permanent Draft Soil microbial communities from agricultural site in Penn Yan, New York, United States Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day30 DOE Joint Genome Institute (JGI) 3300028590 Metagenome Analysis spades v. 3.11.1 Yes Yes dbuckley@cornell.edu Dan Buckley No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.673 -77.032 3208930280 7695983 1574 103 2856 191 SRX5246694 Unrestricted 20.41 Metagenome 3300048780 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 S3 30-34 DOE Joint Genome Institute (JGI) 3300048780 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.353292 19.0475 491033965 648440 122 3 162 7 Restricted 24.8 Metagenome 3300043418 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Little Wolf Creek, Tyee, Oregon, USA - littlewolfcreek_2019_sw_WHONDRS-S19S_0078 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043418 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 43.4313 -123.5855 338493932 489268 162 51 229 75 Unrestricted 47.44 Metagenome 3300043465 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30May2014-rr0298 DOE Joint Genome Institute (JGI) 3300043465 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1188079786 1709236 310 38 411 57 Unrestricted 20.21 Metagenome 3300060745 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_002-O-20210804-comp-1 DOE Joint Genome Institute (JGI) 3300060745 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tundra Soil Unclassified Terrestrial soil 68.627943 -149.347229 1446901187 2415328 475 23 766 34 Unrestricted 15.34 Metagenome 3300037208 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 711 S-2-D DOE Joint Genome Institute (JGI) 3300037208 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 711889384 1191200 233 6 367 8 SRX8146427 Unrestricted 14.87 Metagenome 3300031652 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-40 DOE Joint Genome Institute (JGI) 3300031652 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh sediment 42.722 -70.847 885720362 1666146 557 2 929 11 SRX6468456 Unrestricted 13.01 Metagenome 3300038573 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark - 1569-PRJ1066-RD-Sewage-94_S10_L001 Technical University of Denmark 3300038573 Metagenome Analysis Yes Yes No Engineered Wastewater Unclassified Sewage Unclassified Sewage 55.640494 12.5058209 19009199 42305 102 0 154 4 ERX1585446 0.0 Metagenome 3300009849 *Microbiome Permanent Draft Wood falls microbial communities from Lacaze-Duthiers Canyon, Mediterranean Sea, France Wood falls microbial communities from Lacaze-Duthiers Canyon, Mediterranean Sea, France - F2CT Molecular Research LP (MR DNA) 3300009849 Metagenome Analysis IDBA_UD released per JGI data release policy Yes Yes pierre.galand@obs-banyuls.fr Pierre Galand No Environmental Aquatic Benthic Marine Wood fall Wood falls 42.4666667 3.4666667 66028386 114950 128 1 185 2 0.0 Metagenome 3300029405 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 081_4_29_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029405 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 153826970 200725 192 1 254 0 0.0 Metagenome 3300013601 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100098 University of Pennsylvania 3300013601 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3951623 9530 10 0 16 0 SRX756732 0.0 Metagenome 3300013997 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01393 Weill Cornell Medical College 3300013997 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.62 -73.99 15380342 24254 12 0 18 0 SRX823333 0.0 Metagenome 3300047184 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2017 IH01_6cm DOE Joint Genome Institute (JGI) 3300047184 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.3586 19.0475 162937145 290328 157 5 361 8 Restricted 19.66 Metagenome 3300070690 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lyndon B. Johnson National Grassland, Texas, USA - CLBJ_032-M-20190415-COMP-DNA1 3300070690 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 10998672 30383 17 0 32 0 0.0 Metagenome 3300046746 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_191023.NP2 DOE Joint Genome Institute (JGI) 3300046746 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 547705840 1152789 365 82 579 152 Unrestricted 10.52 Metagenome 3300039273 *Microbiome Permanent Draft Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada - high-flow bush EMw7 Dalhousie University 3300039273 Metagenome Analysis Megahit v. 1.2.8 released by JGI data releasing policy No Yes smurdock@uvic.ca Sheryl Murdock No Environmental Aquatic Hydrothermal vents Marine Tubeworm bush tubeworm bush 47.9497 -129.0983 612144589 1129354 612 8 1012 40 0.0 Metagenome 3300016644 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water catchment in Singapore - WC_Site 4c, Oct Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016644 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 1.35 103.87 32745830 47014 8 5 8 5 0.0 Metagenome 3300042761 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S1_40_50 NMDC pilot DOE Joint Genome Institute (JGI) 3300042761 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37229149 -119.2718121 18008171 55884 128 16 219 23 SRX2522701 0.0 Metagenome 3300029290 *Microbiome Permanent Draft Lab enriched (methane oxidizing communities) paddy soil communities from Xiamen, Fujian, China Lab enriched paddy soil microbial communities from Xiamen, Fujian, China - R1 Novogene 3300029290 Metagenome Analysis IDBA v. 1.1.3 released by JGI data releasing policy No Yes yuezheng@uw.edu Yue Zheng No Environmental Terrestrial Unclassified Soil Agricultural land soil 24.45 118.4 18337657 18136 6 3 8 5 0.0 Metagenome 3300037386 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18A_2a_4 mgh University of Alberta 3300037386 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 66782362 87993 35 0 41 0 0.0 Metagenome 3300021980 *Microbiome Permanent Draft Characterization of microbial community from Mariana Back Arc Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Burke_FS924 _150kmer Marine Biological Laboratory 3300021980 Metagenome Analysis IDBA-UD 1.1.3 Trembath-Reichert et al. ?Active subseafloor microbial communities from Mariana back-arc venting fluids share metabolic strategies across different thermal niches and taxa?, ISMEJ 2019 No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Hydrothermal vent fluids 18.182568 144.719893 974958885 1881906 892 30 1301 57 0.0 Metagenome 3300020471 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000214 (ERX556063-ERR599002) CEA Genoscope 3300020471 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -16.9675 53.9199 1185297524 3162889 437 20 914 38 0.0 Metagenome 3300020549 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 12OCT2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020549 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 110789039 275293 74 10 155 12 SRX1989920 Unrestricted 0.0 Metagenome 3300042053 *Microbiome Permanent Draft Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - M_b18.8 Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042053 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1241 -89.1401 956211275 927147 5 6 8 16 SRX5234785 0.0 Metagenome 3300006191 *Microbiome Permanent Draft Marine microbial communities from the West Antarctic Peninsula, for metatranscriptomic analysis Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA DOE Joint Genome Institute (JGI) 3300006191 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes mattcott@udel.edu Matthew Cottrell, Matthew T. Cottrell No Environmental Aquatic Coastal Marine Unclassified Marine -64.8156 -64.0406 800696355 2281572 448 34 788 64 SRX2848177 Unrestricted 0.0 Metagenome 3300025416 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH29Jun09 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025416 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 163524420 341308 95 33 163 47 SRX2566713 Unrestricted 0.0 Metagenome 3300025671 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes) (version 4) DOE Joint Genome Institute (JGI) 3300025671 Metagenome Analysis spades v. 3.11.1 Yes Yes chenf@umces.edu; bcampb7@clemson.edu Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.12 -75.25 429505323 864409 13 0 17 0 SRX3786009, SRX2838063, SRX3786010 Unrestricted 0.0 Metagenome 3300004278 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_150m DOE Joint Genome Institute (JGI) 3300004278 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 666343162 1588008 573 46 921 101 Unrestricted 0.0 Metagenome 3300029546 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P089V6 Beijing Genomics Institute (BGI) 3300029546 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 130013831 147273 97 0 113 0 0.0 Metagenome 3300023014 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-P29 DOE Joint Genome Institute (JGI) 3300023014 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.5452 -123.5105 33731427 99434 145 45 259 69 SRX4393146 Unrestricted 8.6 Metagenome 3300029619 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35991 Beijing Genomics Institute (BGI) 3300029619 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 224449994 304395 187 1 297 2 0.0 Metagenome 3300022307 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_13 DOE Joint Genome Institute (JGI) 3300022307 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Sediment Marine Unclassified sediment 38.03 -122.37 958333163 2269102 1120 48 1994 62 SRX4054366 Unrestricted 7.05 Metagenome 3300060729 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Yellowstone NP, Wyoming, USA - YELL_046-M-20210705-comp-1 DOE Joint Genome Institute (JGI) 3300060729 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 44.952363 -110.541582 929469631 1698143 496 50 876 77 Unrestricted 20.35 Metagenome 3300051396 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA River water microbial communities from Olympic Peninsula, Washington, USA - W_SEK1_D5 DOE Joint Genome Institute (JGI) 3300051396 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Aquatic River Freshwater Unclassified River water 48.165 -124.244 191081806 339162 136 24 209 46 Unrestricted 41.55 Metagenome 3300028736 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N1_3 DOE Joint Genome Institute (JGI) 3300028736 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 395194252 1040350 468 31 875 63 SRX5355854 Unrestricted 0.0 Metagenome 3300017737 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 14 SPOT_SRF_2010-08-11 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017737 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 295624371 693658 29 53 41 80 SRX7207088, SRX7207089 Unrestricted 0.0 Metagenome 3300009181 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG DOE Joint Genome Institute (JGI) 3300009181 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 45.4091 -72.0994 1217338902 2221651 658 80 986 129 SRX2996438 Unrestricted 0.0 Metagenome 3300028971 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 532_4M Beijing Genomics Institute (BGI) 3300028971 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 83700434 98358 69 0 87 0 ERX491181 0.0 Metagenome 3300061176 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Santa Rita Experimental Range, Tucson, Arizona, USA - SRER_047-M-20210809-comp-1 DOE Joint Genome Institute (JGI) 3300061176 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Desert Soil Unclassified Terrestrial soil 31.910358 -110.838435 651768128 1219849 372 3 716 4 Unrestricted 20.26 Metagenome 3300008720 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159753524 replicate 1 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008720 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 27464340 46707 22 0 36 1 0.0 Metagenome 3300070219 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_003-M-20200806-COMP-DNA1 3300070219 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 52716725 152809 98 8 185 8 0.0 Metagenome 3300026280 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS undermat 2012 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026280 Metagenome Analysis spades v. 3.11.1 Yes Yes dab14@psu.edu Donald Bryant Yes 27379049 Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic microbial mat 44.534 -110.7978 326457512 683092 218 0 302 0 SRX2554541 Unrestricted 0.0 Metagenome 3300070884 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_008-M-20180626-COMP-DNA1 Battelle Memorial Institute 3300070884 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 45.823595 -121.973495 5.28-5.61 67834124 200578 85 10 158 14 0.0 Metagenome 3300000846 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from University of Liverpool Illum_50pgPark_IDBAUD University of Liverpool 3300000846 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 10659182 22299 56 0 111 0 0.0 Metagenome 3300046659 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 soil DOE Joint Genome Institute (JGI) 3300046659 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.587955 -123.193022 6.84 368136941 670710 237 10 465 14 Unrestricted 20.36 Metagenome 2022920012 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP11 Octopus Springs v2 (version 2) DOE Joint Genome Institute (JGI) 2022920012 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu, binskeep@montana.edu; daniel.colman@montana.edu William Inskeep, William P. Inskeep; Daniel Colman Yes 23653623, 23755042, 26140529 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.5340836 -110.7978895 7.9 18442734 28729 67 0 24 0 Unrestricted 0.0 Metagenome 3300005724 *Microbiome Permanent Draft Microbial communities of deep water horizon oil spill from Gulf of Mexico phenanthrene enriched communities from Deep Water Horizon Oil spill University of Texas, Austin 3300005724 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes acidophile@gmail.com Brett Baker No Environmental Aquatic Coastal Marine Unclassified Oil-contaminated sea surface water 28.06958 -88.37225 28179547 31058 3 0 1 0 0.0 Metagenome 3300001852 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM53, ROCA_DNA120_0.2um_25g 3300001852 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River plume Marine Plankton Marine plankton 11.3123 -56.4267 1382658 4579 7 2 17 6 0.0 Metagenome 3300059770 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1449B-02 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059770 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2327 -123.9168 123759043 271354 131 9 208 7 SRX2753614 Unrestricted 0.0 Metagenome 3300011240 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00402 Weill Cornell Medical College 3300011240 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.74 -73.94 61412027 89591 27 0 53 0 SRX822373 0.0 Metagenome 3300005351 *Microbiome Draft Bioreactor Anammox bacterial community from Nijmegen, The Netherlands Bioreactor Anammox bacterial community from Nijmegen, The Netherlands - Scalindua species enirchment v2 (version 2) DOE Joint Genome Institute (JGI) 3300005351 Metagenome Analysis lucy / pga released based on JGI ITS No Yes sgtringe@lbl.gov, m.jetten@science.ru.nl; m.jetten@microbiology.ru.nl Susannah Tringe, Mike Jetten; mike jetten Yes 22103529 Engineered Wastewater Nitrogen removal Nutrient removal Anammox Bioreactor 51.842 5.858 20860096 34040 15 0 7 0 Unrestricted 0.0 Metagenome 3300040677 *Microbiome Permanent Draft Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada Deep seawater microbial communities from Juan de Fuca Ridge, Canada - bkEC Dalhousie University 3300040677 Metagenome Analysis Megahit v. 1.2.8 released by JGI data releasing policy No Yes smurdock@uvic.ca Sheryl Murdock No Environmental Aquatic Oceanic Marine Unclassified Marine 47.9631 -129.0915 239548965 559390 59 27 168 54 0.0 Metagenome 3300002722 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A5-11 DOE Joint Genome Institute (JGI) 3300002722 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 421156 1435 34 0 63 0 SRX1991149 Unrestricted 0.0 Metagenome 3300026331 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_09_30cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026331 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 622283999 1105689 381 13 623 20 SRX2521042 Unrestricted 0.0 Metagenome 3300011375 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00823 Weill Cornell Medical College 3300011375 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.98 9951322 18043 11 0 12 0 SRX822789 0.0 Metagenome 3300023233 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1400 DOE Joint Genome Institute (JGI) 3300023233 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 144877168 254924 94 0 143 0 SRX4397504 Unrestricted 17.22 Metagenome 2088090007 *Microbiome Permanent Draft Freshwater sediment microbial communities from Lake Washington, Seattle, USA, for methane and nitrogen cycles Freshwater sediment microbial communities from Lake Washington, Seattle, for methane and nitrogen Cycles - from flow sorted anaerobic plus nitrate DOE Joint Genome Institute (JGI) 2088090007 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova Yes 23638358 Environmental Aquatic Lentic Freshwater Unclassified Freshwater sediment 47.63 -122.27889 372237563 1015830 398 12 1003 0 Unrestricted 0.0 Metagenome 3300001249 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 21JUL2008 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300001249 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 10190933 18966 18 5 27 5 SRX3310674 Unrestricted 0.0 Metagenome 3300049995 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2013 IS1-MC_30cm DOE Joint Genome Institute (JGI) 3300049995 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.213 19.0242 477643588 740392 260 1 425 1 Restricted 32.04 Metagenome 3300031873 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0 DOE Joint Genome Institute (JGI) 3300031873 Metagenome Analysis spades v. 3.12.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.536 -110.4254 2972550824 6600638 2060 21 3427 44 SRX6412885 Unrestricted 9.16 Metagenome 3300049420 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River, Colorado, USA - 13-Cellobiose+Brdu_Short DOE Joint Genome Institute (JGI) 3300049420 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 185221451 434145 258 8 366 17 Restricted 15.46 Metagenome 3300009578 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3734_803 DOE Joint Genome Institute (JGI) 3300009578 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic 6.4994 -48.0 54728435 93421 78 5 96 7 SRX2753932 Unrestricted 0.0 Metagenome 3300024246 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK21 DOE Joint Genome Institute (JGI) 3300024246 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 174146571 421149 268 31 423 37 SRX4547525 Unrestricted 10.28 Metagenome 3300014896 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 560_B Beijing Genomics Institute (BGI) 3300014896 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 20536113 24510 10 0 12 0 ERX491205 0.0 Metagenome 7000000433 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 765640925 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000433 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 139286433 222824 0 0 0 0 0.0 Metagenome 3300013869 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In1 SAF170 SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300013869 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1 -118.1 33677864 58386 46 5 78 10 Unrestricted 0.0 Metagenome 3300061763 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - Treefall.103118 DOE Joint Genome Institute (JGI) 3300061763 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.5322 -110.7965 8-9 255061375 536867 209 0 261 1 Unrestricted 124.82 Metagenome 3300044780 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - III_P72_A150 DOE Joint Genome Institute (JGI) 3300044780 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Pasture Soil Agricultural land Soil -10.2036 -62.774 816744824 2270825 611 12 1096 10 Unrestricted 7.47 Metagenome 3300070994 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_002-M-20210524-COMP-DNA1 3300070994 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 65291 238 6 0 1 0 0.0 Metagenome 3300070372 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Florida, USA - DSNY_004-O-20160713-COMP-DNA3 3300070372 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 80009616 226748 55 7 126 6 0.0 Metagenome 3300003860 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from the University of Notre Dame, USA, of lakes that contribute to methane emissions Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL DOE Joint Genome Institute (JGI) 3300003860 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes sjones20@nd.edu Stuart Jones Yes 28386012 Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 41.7 -86.23 256677256 664062 817 200 1317 327 SRX2576541 Unrestricted 0.0 Metagenome 3300009097 *Microbiome Permanent Draft Rhizosphere and bulk soil microbial communities from Harvard Forest, USA Bulk soil microbial communities from Harvard Forest, USA - 2Bulk_unsorted metaG DOE Joint Genome Institute (JGI) 3300009097 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes deangelis@microbio.umass.edu Kristen M DeAngelis PhD, Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Bulk soil bulk soil 42.5502 -72.1737 3284153 8683 12 1 23 2 SRX2718035 Unrestricted 0.0 Metagenome 3300011596 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00532 Weill Cornell Medical College 3300011596 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -73.94 25651639 38684 21 0 27 0 SRX822500 0.0 Metagenome 3300014745 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG DOE Joint Genome Institute (JGI) 3300014745 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil miscanthus rhizosphere 42.3948 -85.3738 2612080867 6031056 1790 133 3185 261 SRX4808758 Unrestricted 5.11 Metagenome 3300045477 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-505 Genome Quebec 3300045477 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.202061 -120.055602 937009702 2208046 369 61 616 119 0.0 Metagenome 3300006949 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-16B DOE Joint Genome Institute (JGI) 3300006949 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.299 -156.61 781410680 2637668 696 31 1373 42 SRX2910045 Unrestricted 0.0 Metagenome 3300060328 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Rexia erecta CAT4-SG4 and co-occurring heterotrophs from stone wall from Great Smoky National Park, Tennessee, United States - 20190605_46B DOE Joint Genome Institute (JGI) 3300060328 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Stone wall 35.6414 -83.06 84771282 87236 24 0 26 0 Restricted 0.0 Metagenome 3300026216 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil leachate replicate DNA2013-051 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026216 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Soil 68.6137 -149.3144 156784411 340710 169 2 289 5 SRX2739460 Unrestricted 0.0 Metagenome 3300043576 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains ecozone, Canada - Lake 08-147 Genome Quebec 3300043576 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.035782 -76.184422 460607223 1215044 342 51 622 124 0.0 Metagenome 3300009594 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Groundwater microbial communities from Devils Hole, Nevada to study Microbial Dark Matter (Phase II) - Devils Hole DOE Joint Genome Institute (JGI) 3300009594 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes rstepanauskas@bigelow.org; duane.moser@dri.edu Ramunas Stepanauskas; Duane Moser No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 36.43 -116.29 32867632 58451 71 11 109 10 SRX2948573 Unrestricted 0.0 Metagenome 3300032282 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada - Lake 06-174 Genome Quebec 3300032282 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.137225 -79.231513 713343764 1516567 319 35 580 86 0.0 Metagenome 3300056587 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 P1 20-24 (re-filtered) (version 2) DOE Joint Genome Institute (JGI) 3300056587 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533617 19.0471317 554279606 584178 74 0 75 0 Restricted 13.83 Metagenome 7000000238 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human subgingival plaque microbial communities from NIH, USA - visit 1, subject 763496533 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000238 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human 39.0042816 -77.1012173 84093198 157268 0 0 0 0 0.0 Metagenome 2100351014 *Microbiome Permanent Draft Hypersaline microbial communities from Antarctic Deep Lake Hypersaline microbial communities from Antarctic Deep Lake - 13m 0.1um DOE Joint Genome Institute (JGI) 2100351014 Metagenome Analysis Newbler and/or Velvet No Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli, Rick Cavicchioli; Michelle Allen Yes 24082106 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline -68.54 78.18 80245247 201266 43 7 77 0 0.0 Metagenome 3300035284 *Microbiome Permanent Draft Extreme environments viral communities from various locations Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 485_2000 DOE Joint Genome Institute (JGI) 3300035284 Metagenome Analysis spades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified filtered seawater 4.0943 -41.4341 127632732 369584 29 3 54 16 SRX7709940 Unrestricted 90.07 Metagenome 3300010303 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015 DOE Joint Genome Institute (JGI) 3300010303 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 848890760 1872702 530 18 964 35 SRX2525077 Unrestricted 0.0 Metagenome 3300045800 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - G3-R3-B DOE Joint Genome Institute (JGI) 3300045800 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3549 19.0438 439712026 963922 323 14 564 20 Unrestricted 7.77 Metagenome 3300044556 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_CSTR_049 DOE Joint Genome Institute (JGI) 3300044556 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 178407134 270448 187 2 246 1 SRX12654484 Unrestricted 85.92 Metagenome 3300038331 *Microbiome Permanent Draft Freshwater bacterial communities from Lake Cadagno, Southern Alps, Switzerland Freshwater bacterial communities from Lake Cadagno, Southern Alps, Switzerland - LC_15mm_E1 First draft University of Michigan 3300038331 Metagenome Analysis MEGAHIT v. 1.0.6 released by JGI data releasing policy No Yes cabler@umich.edu Rachel Cable No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 46.55 8.7115 1279942629 2343162 895 162 1429 223 0.0 Metagenome 3300025480 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_6_150 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025480 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 251366596 470101 132 4 198 6 SRX3002037 Unrestricted 0.0 Metagenome 3300010244 *Microbiome Permanent Draft Processed tobacco microbial communities from Domestic Moist Snuff USA Processed tobacco microbial communities from Atlanta, GA, USA - retail point 1 - domestic moist snuff M6 re-assembly Centers for Disease Control and Prevention (CDC), USA 3300010244 Metagenome Analysis SPADES_3_9 default parameters released per JGI data release policy Yes Yes wyu3@cdc.gov Robert E. Tyx No Engineered Food production Unclassified Unclassified Unclassified Processed toboaco 33.881 -84.294 29071363 34674 29 3 24 7 0.0 Metagenome 3300000127 *Microbiome Draft Marine microbial communities from chronically polluted sediments in four geographic locations Marine microbial communities from chronically polluted sediments in Adventfjord, Norway - Svalbard Archipelago station 1 sample NOR 05_45m DOE Joint Genome Institute (JGI) 3300000127 Metagenome Analysis released based on JGI ITS Yes Yes hdionisi@cenpat.edu.ar Hebe Dionisi No Environmental Aquatic Intertidal zone Marine Sediment Marine 78.237209 15.677776 324203527 792093 610 188 1029 303 Unrestricted 0.0 Metagenome 3300043395 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Georgia, United States - altamaha_2019_sw_WHONDRS-S19S_0010 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043395 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 31.6679 -81.8403 696160263 1205315 299 57 474 127 Unrestricted 38.38 Metagenome 3300032151 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - CB4_SCM DOE Joint Genome Institute (JGI) 3300032151 Metagenome Analysis spades v. 3.13.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified Marine 75.0007 -150.0027 826136457 1608732 681 83 1113 173 SRX5797825 Unrestricted 20.58 Metagenome 3300022164 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022164 Metagenome Analysis spades v. 3.11.1-check Yes Yes chenf@umces.edu; bcampb7@clemson.edu Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.124826 -75.260873 130696466 353900 18 3 23 3 SRX3300988, SRX3300989, SRX2745058 Unrestricted 0.0 Metagenome 3300029432 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 045_3_10_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029432 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 237352522 298819 269 0 345 0 0.0 Metagenome 2228664002 *Microbiome Draft Laboratory Nasutitermes corniger gut microbial communities from Florida, USA P3 Gut Segment Termite Single Cell Genome_Treponema sp. T3a from Florida, USA DOE Joint Genome Institute (JGI) 2228664002 Metagenome Analysis Newbler, Velvet released per Simon -- IMGSUPP2949 No Yes stringe@lbl.gov Susannah Tringe No Host-associated Arthropoda: Insects Hindgut Digestive system Paunch/P3 segment Laboratory Nasutitermes corniger gut 26.135 -80.129 5009749 15496 346 0 1039 0 0.0 Metagenome 3300020680 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 13JUN2007 hypolimnion DOE Joint Genome Institute (JGI) 3300020680 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 41364591 89113 62 16 85 33 Unrestricted 0.0 Metagenome 3300016715 *Microbiome Permanent Draft Viral community in wastewater in Singapore Wastewater viral communities from primary settling tank in WWT plant in Singapore - PST_Nov16 Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016715 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Engineered WWTP Unclassified Wastewater Unclassified wastewater 1.28 103.74 35756514 60910 0 1 17 1 0.0 Metagenome 3300037310 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from Nevada, United States - South Indian Spring (SIS_S4) DOE Joint Genome Institute (JGI) 3300037310 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified Desert spring 36.4265 -116.3098 7.37 2766543246 3979064 924 53 1428 57 SRX9167622 Unrestricted 17.06 Metagenome 3300025162 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025162 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; sari.peura@slu.se Ramunas Stepanauskas; Sari Peura No Environmental Aquatic Lake Freshwater Unclassified Freshwater 61.2 25.1 6.05 742600292 1380588 360 15 571 20 SRX2954898 Unrestricted 0.0 Metagenome 3300021347 *Microbiome Permanent Draft Coastal seawater microbial communities from Pivers Island, North Carolina, United States Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266 DOE Joint Genome Institute (JGI) 3300021347 Metagenome Analysis spades v. 3.11.1-check Yes Yes dana.hunt@duke.edu Dana Hunt No Environmental Aquatic Coastal Marine Unclassified seawater 34.7181 -76.6707 904855159 2267533 643 244 1013 437 SRX4010394 Unrestricted 18.53 Metagenome 3300021916 *Microbiome Permanent Draft Marine eukaryotic communities from various locations to study complex ecological interactions Marine eukaryotic communities from Monterey Bay, California, United States - M1_20Mar14CPVII9sort6BwellG10 DOE Joint Genome Institute (JGI) 3300021916 Metagenome Analysis spades v. 3.11.1-check Yes Yes twoyke@lbl.gov; azworden@mbari.org Tanja Woyke; Alexandra Worden No Environmental Aquatic Unclassified Marine Unclassified seawater 36.746 -122.0257 51394148 55127 1 2 1 2 Unrestricted 242.45 Metagenome 3300023106 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L104-311B-1 DOE Joint Genome Institute (JGI) 3300023106 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 653631646 1359273 466 114 725 160 SRX4801462 Unrestricted 10.48 Metagenome 3300027781 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 9/18/14 C2 DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027781 Metagenome Analysis spades v. 3.11.1 Yes Yes ebyoung@uwm.edu Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 874907431 1810318 559 172 878 325 SRX2748448 Unrestricted 0.0 Metagenome 3300012624 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100355 University of Pennsylvania 3300012624 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 23311509 49935 46 11 100 18 SRX756302 0.0 Metagenome 3300070978 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Alabama, USA - LENO_001-M-20180711-COMP-DNA1 3300070978 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 32390267 90500 61 4 112 3 0.0 Metagenome 3300014910 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01200 Weill Cornell Medical College 3300014910 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.83 -73.91 31074263 47029 18 0 32 0 SRX823155 0.0 Metagenome 3300042726 *Microbiome Permanent Draft Marine microbial symbiotic communities from Gulf of Mexico deep-sea corals Paramuricea sp. type B3 Deep-sea coral microbial communities from Gulf of Mexico, USA - 17110 AT357 T3-1 Re-assembly Ecosystem Impacts of Oil and Gas Inputs to the Gulf Consortium, The Pennsylvania State University 3300042726 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Invertebrates Coral Cnidaria Unclassified Deep-sea coral 27.587 -89.705 551906068 577382 4 18 8 76 SRX6911440 0.0 Metagenome 3300054052 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin01_60_metaG re-annotation DOE Joint Genome Institute (JGI) 3300054052 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 903572106 1645589 292 1 449 2 SRX3291950 0.0 Metagenome 3300047309 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Congo River, Brazzaville, Congo - CONGO_049 DOE Joint Genome Institute (JGI) 3300047309 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater -4.3092 15.2356 583853552 1323410 596 77 1100 135 Unrestricted 20.59 Metagenome 3300041856 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_315 MetaG AgResearch, New Zealand, Mosgeil 3300041856 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 925456765 1829261 237 21 802 39 0.0 Metagenome 3300050124 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim1 100-104 DOE Joint Genome Institute (JGI) 3300050124 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.352987 19.047292 188424725 280440 102 1 121 2 Restricted 46.55 Metagenome 3300012200 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG DOE Joint Genome Institute (JGI) 3300012200 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.5673 -123.4758 1977681095 4155130 1374 74 2493 149 SRX3372774 Unrestricted 0.0 Metagenome 3300002929 *Microbiome Permanent Draft Pig gut microbial communities from Shenzen, Guangdong, China Pig gut microbial communities from Shenzen, Guangdong, China 3300002929 Metagenome Analysis IDBA_UD released by JGI data releasing policy No Yes limeng848@gmail.com Guaymas sediment, MENG LI No Host-associated Mammals Large intestine Digestive system Unclassified Pig gut 22.55 114.15 6 11201682 27480 0 3 1 2 0.0 Metagenome 3300050503 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Bulk soil microbial communities from a Populus tree surrounding site in Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2 re-annotation DOE Joint Genome Institute (JGI) 3300050503 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Environmental Terrestrial Tree plantation Soil Unclassified Bulk soil 35.8444 -83.9599 3609643939 8355376 1673 72 3197 81 SRX2842010 0.0 Metagenome 3300015051 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction) DOE Joint Genome Institute (JGI) 3300015051 Metagenome Analysis metalrec/blasr v. metalrec version 1.0.2/blasr 1.3.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 475896722 801030 341 168 477 183 SRX3049020, SRX3049012, SRX3049013, SRX3049014, SRX3049015, SRX3049016, SRX3049017, SRX3049018, SRX3049019 Unrestricted 0.0 Metagenome 3300025825 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG18_big_fil_WC_8/21/14_2.50 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025825 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 546353813 914640 489 47 694 58 SRX3348988 Unrestricted 0.0 Metagenome 3300044716 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME22Jul2004-rr0901 DOE Joint Genome Institute (JGI) 3300044716 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 982967453 1485119 368 63 503 95 Unrestricted 21.74 Metagenome 3300016387 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 DOE Joint Genome Institute (JGI) 3300016387 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Unclassified Soil 18.321 -65.8172 2760125434 6032105 972 38 1793 76 SRX5313695, SRX3604230 Unrestricted 0.0 Metagenome 3300040259 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 046_R1_022417 University of Maryland 3300040259 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 61.00563056 25.65590833 7848674 15077 17 1 21 2 0.0 Metagenome 3300065596 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 793 in Claresholm, Alberta, Canada - S00JY_0390 Microbiome Insights 3300065596 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 50.0026073 -113.3303972 80330521 124143 37 0 75 1 0.0 Metagenome 3300002209 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection C2 DOE Joint Genome Institute (JGI) 3300002209 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.534762 -107.782602 229994900 512153 394 4 844 11 SRX1990986 Unrestricted 0.0 Metagenome 3300014614 *Microbiome Permanent Draft Human bile duct microbial communities from gallstone patients in Hangzhou, China Human bile duct microbial communities from gallstone patients in Hangzhou, China - B1_bile Beijing Institution of Radiation Medicine 3300014614 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Biliary tract Digestive system Bile ducts: Bile Human bile duct 9679818 13427 3 6 3 3 SRX957020, SRX957033 0.0 Metagenome 3300012920 *Microbiome Permanent Draft Marine microbial communities from the Costa Rica Dome and surrounding waters Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG DOE Joint Genome Institute (JGI) 3300012920 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes msaito@whoi.edu Mak Saito No Environmental Aquatic Oceanic Marine Photic zone surface seawater 8.7051 -86.4906 2025237182 4375761 1033 311 1671 536 SRX3375197 Unrestricted 0.0 Metagenome 3300012495 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.old.040610 DOE Joint Genome Institute (JGI) 3300012495 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 105281475 283909 212 20 497 28 SRX3527422 Unrestricted 0.0 Metagenome 3300001075 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 63 DOE Joint Genome Institute (JGI) 3300001075 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 11452645 32412 43 0 66 0 SRX1985412 Unrestricted 0.0 Metagenome 7000000325 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763982056 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000325 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 5236035 12545 0 0 0 0 0.0 Metagenome 3300001183 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY88 J. Craig Venter Institute (JCVI) 3300001183 Metagenome Analysis released per JGI data release policy No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 224114232 530809 61 19 95 33 0.0 Metagenome 3300048804 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-F1(1) 30-34 DOE Joint Genome Institute (JGI) 3300048804 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0433 466867272 744772 261 1 404 2 Restricted 13.96 Metagenome 3300028484 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung F36 DOE Joint Genome Institute (JGI) 3300028484 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Elk feces 38.04 -122.5 235294088 444449 236 26 331 42 SRX5092977, SRX5092978 Unrestricted 0.0 Metagenome 3300006742 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160158126 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006742 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 58300398 87774 47 0 67 0 0.0 Metagenome 3300041977 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from the Rocky Mountain Biological Laboratory (RMBL), Gothic, Colorado, United States - 2018WM_6W DOE Joint Genome Institute (JGI) 3300041977 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9595 -106.99 66224273 202296 173 14 327 24 SRX14810857 Unrestricted 7.56 Metagenome 3300036971 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - SCT 61 I DOE Joint Genome Institute (JGI) 3300036971 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 987649671 2045504 888 99 1323 169 SRX8377724 Unrestricted 8.27 Metagenome 3300032076 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300032076 Metagenome Analysis spades v. 3.12.0 Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Unclassified Soil 18.321 -65.8172 4549703419 9510522 1198 13 2018 28 SRX3604231, SRX5634846 Unrestricted 0.0 Metagenome 3300013497 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01335 Weill Cornell Medical College 3300013497 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.83 -73.85 39346593 49153 13 3 23 6 SRX823275 0.0 Metagenome 3300029905 *Microbiome Permanent Draft Fecal microbial communities from lean and fat line chickens in Harbin, China Fecal microbial communities from Fat line chicken in Harbin, China - MGJ17 Inner Mongolia Agricultural University 3300029905 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Birds Large intestine Digestive system Fecal Fecal 45.73 126.73 235732452 386548 323 3 555 4 SRX2066120 0.0 Metagenome 3300039372 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 567_M Beijing Genomics Institute (BGI) 3300039372 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 89491864 104105 46 0 86 0 ERX491218 0.0 Metagenome 3300046539 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere DOE Joint Genome Institute (JGI) 3300046539 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5882 -123.1931 499614374 891720 276 4 500 12 Unrestricted 15.92 Metagenome 3300022515 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 1-5 DOE Joint Genome Institute (JGI) 3300022515 Metagenome Analysis spades v. 3.11.1-check Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0472 108492994 323026 94 13 153 13 SRX4415331, SRX8128004 Unrestricted 0.0 Metagenome 3300031819 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21 DOE Joint Genome Institute (JGI) 3300031819 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 2038933077 4857618 670 18 1193 41 SRX5820387 Unrestricted 12.48 Metagenome 7000000161 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764305738 replicate 1 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000161 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 16478036 31192 0 0 0 0 0.0 Metagenome 3300007621 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1547A-3 DOE Joint Genome Institute (JGI) 3300007621 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2314 -123.8828 286749830 548256 282 35 443 59 SRX2753624 Unrestricted 0.0 Metagenome 3300014486 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Endophyte microbial communities from Sorghum bicolor roots, Mead, Nebraska, USA - 072115-40_1 MetaG DOE Joint Genome Institute (JGI) 3300014486 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Unclassified Roots Unclassified Root 41.1613 -96.6752 842535207 1415212 59 2008 53 3475 SRX3579734 Unrestricted 32.45 Metagenome 3300070625 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_008-O-20200716-COMP-DNA1 3300070625 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 28593820 69805 65 21 127 43 0.0 Metagenome 3300029225 *Microbiome Permanent Draft North Pond 2017 Crustal fluid microbial communities from North Pond, Mid-Atlantic Ridge, Atlantic Ocean - 1383CS 2017 Marine Biological Laboratory 3300029225 Metagenome Analysis IDBA-UD v. 1.1.2 released by JGI data releasing policy No Yes lmseyler@gmail.com Lauren Seyler No Environmental Aquatic Oceanic Marine Crustal Fluids Oceanic crustal fluids 22.75 -46.083 74804225 79415 50 0 62 0 0.0 Metagenome 3300022568 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 15 Selected contigs with viral hallmark genes Autonomous University of Barcelona 3300022568 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 1098202 1714 0 0 0 0 0.0 Metagenome 3300021480 *Microbiome Permanent Draft Freshwater microbial communities from Serido River, Parelhas, Brazil - PT15 Freshwater microbial communities from Serido River, Parelhas, Brazil - PT15 Federal University of Rio Grande do Norte 3300021480 Metagenome Analysis Geneious released by JGI data releasing policy No Yes lfagnez@ufrnet.br Lucymara Agnez-Lima No Environmental Aquatic River Freshwater Unclassified freshwater -6.6863 -36.6558 749661741 2608438 1529 209 2579 317 0.0 Metagenome 3300000720 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 28 DOE Joint Genome Institute (JGI) 3300000720 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 13917824 44443 39 0 64 1 SRX4340705 Unrestricted 0.0 Metagenome 3300003192 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment Column1K3-90 454 Life Sciences 3300003192 Metagenome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.342509 40.478759 6-8 0 0 0 0 0 0 0.0 Metagenome 3300034193 *Microbiome Permanent Draft Metagenomic SGS 2x251 Cornfield soil microbial communities from Madison, WI, USA - CF1 Illumina 3300034193 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Agricultural land Soil 43.056543 -89.477477 1834897065 5173251 697 24 1138 36 0.0 Metagenome 3300007297 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158337416 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007297 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 144863848 183938 98 0 143 0 0.0 Metagenome 3300038832 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample03 King Abdulaziz City for Science and Technology (KACST) 3300038832 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 17.39 40.54 21177132 48585 44 2 78 0 SRX1097587 0.0 Metagenome 3300006188 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_1000_plan - 1398105538256 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300006188 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 543374669 1074170 279 203 392 164 SRX2867530, SRX2867531 Unrestricted 0.0 Metagenome 3300041800 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - TR_27_wk_3 DOE Joint Genome Institute (JGI) 3300041800 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9186 -107.036 189807157 539978 257 7 569 13 SRX14808387 Unrestricted 8.17 Metagenome 3300011176 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 9 - S13.3.40.a - transect 3, age 29 years, surface depth). University of Bristol 3300011176 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes EAEloeFadrosh@lbl.gov; maisie.nash@bristol.ac.uk; ama@envs.au.dk Emiley Eloe-Fadrosh; Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 79.14083333 12.09222222 7.5 3544627 9599 21 3 46 4 0.0 Metagenome 3300025347 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Hot Lake Consortium UCC-SLE (SPAdes) DOE Joint Genome Institute (JGI) 3300025347 Metagenome Analysis spades v. 3.11.1 Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson Yes 24312082 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 86609694 103669 40 0 48 0 SRX2575238 Unrestricted 0.0 Metagenome 3300046820 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Umpqua River, Elkton, Oregon, USA - umpqua_2019_sw_WHONDRS-S19S_0079 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300046820 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 43.6367 -123.5719 610180821 890789 226 69 320 97 Unrestricted 0.0 Metagenome 3300025916 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025916 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.4774 -85.451 3067790225 7322921 1125 103 2170 176 SRX2745044 Unrestricted 0.0 Metagenome 3300036984 *Microbiome Permanent Draft Sediment microbial communities from various lakes in Switzerland Sediment microbial communities from Lake Zug, Canton of Zug, Switzerland - LZug_2.5 DOE Joint Genome Institute (JGI) 3300036984 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mark.lever@usys.ethz.ch Mark Alexander Lever No Environmental Aquatic Lake Freshwater Sediment sediment 47.1639 8.4969 570180931 980675 252 4 400 5 SRX8398953 Unrestricted 16.56 Metagenome 3300029739 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37199 Beijing Genomics Institute (BGI) 3300029739 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 188756185 237945 127 0 220 0 0.0 Metagenome 3300004632 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius ilvae PIANOSA.1 DOE Joint Genome Institute (JGI) 3300004632 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 1222624290 2596093 7 9 22 20 SRX3299599, SRX3299600 Unrestricted 0.0 Metagenome 2070309017 *Microbiome Permanent Draft Human fecal microbial communities from Orebro University Hospital, Sweden, of individuals with Crohns disease Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 270 University of Maryland School of Medicine 2070309017 Metagenome Analysis released per JGI data release policy No Yes cmfraser@som.umaryland.edu Claire Fraser No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 59.274717 15.230656 107612854 165191 0 0 0 0 0.0 Metagenome 3300017958 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300017958 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1742435537 3699959 1518 148 2512 245 SRX4072330 Unrestricted 17.14 Metagenome 3300011622 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00361 Weill Cornell Medical College 3300011622 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.64 -74.07 25507239 42065 17 0 23 0 SRX822333 0.0 Metagenome 3300034358 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_01D_16 DOE Joint Genome Institute (JGI) 3300034358 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9141 -147.8348 735263632 1953456 714 25 1272 62 SRX7633786 Unrestricted 7.03 Metagenome 3300017617 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - LG11-05 University of Michigan 3300017617 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.76324 -84.405 8392745 12664 5 3 7 1 0.0 Metagenome 3300028471 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_26JUN2017_LD1 DOE Joint Genome Institute (JGI) 3300028471 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 56467152 104300 3 30 3 44 SRX5345819 Unrestricted 22.46 Metagenome 3300045856 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - P2-R3-A DOE Joint Genome Institute (JGI) 3300045856 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.357 19.047 28446268 79800 42 11 76 20 Unrestricted 4.83 Metagenome 3300044500 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_132 DOE Joint Genome Institute (JGI) 3300044500 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 645088691 1525773 419 6 761 10 Unrestricted 7.36 Metagenome 3300043029 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B6.10_Sample6.Rodeo10.Well662 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043029 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 151061695 248275 156 0 196 0 SRX8355719 Unrestricted 87.27 Metagenome 3300019726 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BRT_10-11_MG DOE Joint Genome Institute (JGI) 3300019726 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 117381721 291024 256 32 472 55 SRX3982712 Unrestricted 3.56 Metagenome 3300008003 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-15 DOE Joint Genome Institute (JGI) 3300008003 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 981675676 1696889 962 40 1493 77 SRX3198359 Unrestricted 0.0 Metagenome 3300010235 *Microbiome Permanent Draft Terrestrial oil reservoir microbial communities from Alaska Terrestrial oil reservoir microbial community from Schrader Bluff Formation, Alaska - SB2 Yale Center for Genome Analysis 3300010235 Metagenome Analysis idba-ud released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis Yes 26787827 Environmental Terrestrial Unclassified Oil reservoir Unclassified produced fluid 70.4 -148.7 320580580 1009427 416 5 1043 36 0.0 Metagenome 3300040341 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 086_R1_022417 University of Maryland 3300040341 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.73869444 27.08322222 4516014 13323 28 2 60 3 0.0 Metagenome 3300049200 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - B21_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049200 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 196559806 443270 288 4 563 7 Unrestricted 0.0 Metagenome 3300011763 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00264 Weill Cornell Medical College 3300011763 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.97 32916577 55577 17 0 21 0 SRX822237 0.0 Metagenome 3300010328 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Lake sediment bacterial and archeal communities from Gulf of Boni, Indonesia to study Microbial Dark Matter (Phase II) - ?I19B2 metaG DOE Joint Genome Institute (JGI) 3300010328 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; aurele.vuillemin@gfz-potsdam.de Ramunas Stepanauskas; Aurele Vuillemin No Environmental Aquatic Lake Freshwater Sediment Lake sediment -2.75 121.05 7.2-7.4 941894036 1992267 769 4 1466 1 SRX2525677 Unrestricted 0.0 Metagenome 3300047662 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BT-preinc-01redo (version 2) DOE Joint Genome Institute (JGI) 3300047662 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3555 19.0492 229650961 418901 142 23 229 32 Restricted 0.0 Metagenome 3300005075 *Microbiome Permanent Draft Hypersaline water metagenomes of microbial communities from Lake Tyrrell, Victoria, Australia Lake Tyrrell, January 2009, 3 - 0.8 um size fraction, water metagenome HBT J. Craig Venter Institute 3300005075 Metagenome Analysis Newbler v2.7 Released per submitter's request No Yes eallen@ucsd.edu Eric Allen No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline water -35.309 142.7795 7.1 404069314 1098982 850 0 1407 1 0.0 Metagenome 3300037185 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 C-2-D DOE Joint Genome Institute (JGI) 3300037185 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3544 19.048 731021948 1382061 400 0 658 5 SRX8162373 Unrestricted 9.88 Metagenome 3300049920 *Microbiome Permanent Draft Marine sediment microbial communities from Pacific Ocean, California, USA Marine sediment microbial communities from Pacific Ocean, California, USA - SSC_C4_L1 DOE Joint Genome Institute (JGI) 3300049920 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pjensen@ucsd.edu Paul r. Jensen No Environmental Aquatic Oceanic Marine Sediment Marine sediment 32.71 -117.38 161394059 276623 105 3 191 5 Unrestricted 20.26 Metagenome 3300039219 *Microbiome Draft Microbial Analysis of Soils on the Tibetan Plateau Based on Metagenomics Soil microbial communities from Bamucuo, Tibet, China - s05-01 Shanghai Majorbio Bio-pharm Technology Co. 3300039219 Metagenome Analysis Metahit v. 1.2.8 released by JGI data releasing policy No Yes m170100029@st.shou.edu.cn chaoxu dai No Environmental Terrestrial Soil crust Soil Unclassified soil 31.34 90.6 891425083 1183400 208 14 288 15 0.0 Metagenome 3300049495 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC13 DOE Joint Genome Institute (JGI) 3300049495 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 38619856 100148 147 4 269 2 Unrestricted 21.25 Metagenome 3300012256 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100438 University of Pennsylvania 3300012256 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 24737563 58020 15 2 24 0 SRX756560 0.0 Metagenome 3300037073 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C5-7B DOE Joint Genome Institute (JGI) 3300037073 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 288892185 855554 506 13 830 21 SRX8798853 Unrestricted 5.34 Metagenome 3300070273 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Alaska, USA - DEJU_006-M-20180618-COMP-DNA1 3300070273 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 7280620 23748 57 10 108 11 0.0 Metagenome 3300028878 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117 DOE Joint Genome Institute (JGI) 3300028878 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.91721605 -106.9559947 1066039598 2488617 418 17 709 22 SRX5354619 Unrestricted 12.07 Metagenome 3300034759 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from deep shales in Oklahoma, United States - M2-7-4 DOE Joint Genome Institute (JGI) 3300034759 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back fracking water 35.784 -98.26 182022504 287883 199 2 275 4 SRX8135640 Unrestricted 337.46 Metagenome 3300070494 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_006-M-20200720-COMP-DNA1 Battelle Memorial Institute 3300070494 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Grasslands Soil Pasture Terrestrial soil 38.897609 -78.152007 5.84-6.15 8326170 26556 64 7 95 12 0.0 Metagenome 3300005183 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1 DOE Joint Genome Institute (JGI) 3300005183 Metagenome Analysis Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.045666 -121.866516 1010031628 3017220 877 8 1964 10 SRX7142151 Unrestricted 0.0 Metagenome 3300024525 *Microbiome Permanent Draft bacteria associated with phytoplankton bloom Marine bacterial communities from Xiamen coast, China - E1 State Key Laboratory of Marine Environmental Sciences, Xiamen University 3300024525 Metagenome Analysis SOAP v. 3.3 released by JGI data releasing policy No Yes tangkai@xmu.edu.cn Kaitang No Environmental Aquatic Coastal Marine Unclassified Marine 24.27 118.2 442805303 1204805 315 16 600 56 0.0 Metagenome 3300027774 *Microbiome Permanent Draft Marine microbial communities from oxygen minimum zone in the mesopelagic equatorial Pacific Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_5_50m (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027774 Metagenome Analysis spades v. 3.11.1 Yes Yes cdupont@jcvi.org Chris L. Dupont No Environmental Aquatic Oceanic Marine Unclassified Marine 0.0 -158.0 721427331 1719611 349 4 510 11 SRX1990983 Unrestricted 0.0 Metagenome 3300046485 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvCe-C(3) 1-5 DOE Joint Genome Institute (JGI) 3300046485 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0434 709093935 1147755 325 15 458 21 Restricted 13.46 Metagenome 3300064896 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0623 Microbiome Insights 3300064896 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.33140284 -114.1207075 77518316 112626 31 0 53 0 0.0 Metagenome 3300042397 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME02Jul2001D8-rr0846 DOE Joint Genome Institute (JGI) 3300042397 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 776402158 1226514 279 22 330 33 Unrestricted 23.38 Metagenome 7000000099 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 604812005 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000099 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 66335924 132242 0 0 0 0 0.0 Metagenome 3300027090 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF016 (SPAdes) DOE Joint Genome Institute (JGI) 3300027090 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 66116013 163370 40 4 73 9 SRX2014327 Unrestricted 0.0 Metagenome 3300026805 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-A (SPAdes) DOE Joint Genome Institute (JGI) 3300026805 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 28934388 95047 96 8 152 9 SRX2575239 Unrestricted 0.0 Metagenome 3300029338 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 024_10_24_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029338 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 223567476 326695 264 0 327 0 0.0 Metagenome 3300045977 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P11SSC1_191110_c DOE Joint Genome Institute (JGI) 3300045977 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 1667848562 2460395 443 0 746 0 SRX20651008 Unrestricted 13.26 Metagenome 3300036894 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 S3 5-9 DOE Joint Genome Institute (JGI) 3300036894 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3531 19.0476 862621634 1616516 325 23 477 38 SRX8138156 Unrestricted 9.88 Metagenome 3300007052 *Microbiome Permanent Draft Cephalotes ants gut microbiomes Ant gut microbial communities from Cephalotes eduarduli, Brazil Harvard University 3300007052 Metagenome Analysis IDBA-UD released by Yi Hu Yes Yes pl356@drexel.edu, yihu.bnu@gmail.com Piotr Lukasik, Yi Hu No Host-associated Arthropoda: Insects Gut Digestive system Unclassified ant gut -19.11 -48.24 81964823 156982 39 1 47 2 0.0 Metagenome 2051774001 *Microbiome Permanent Draft EBPR wastewater treatment microbial communities from Japan EBPR wasterwater bioreactor microbial communities from Japan - Sample 370 2051774001 Metagenome Analysis not assembled released by JGI data releasing policy No Yes t.hideyuki@gmail.com Hideyuki Tamaki No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor EBPR wastewater treatment 153567242 315138 0 0 0 0 0.0 Metagenome 7000000672 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 638754422 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000672 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 8133298 17425 0 0 0 0 0.0 Metagenome 3300012885 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 DOE Joint Genome Institute (JGI) 3300012885 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 238961117 629130 523 47 1174 78 SRX3899442, SRX3899441 Unrestricted 0.0 Metagenome 3300065622 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 809 in Oyen, Alberta, Canada - S00JY_0414 Microbiome Insights 3300065622 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.10302812 -110.3235998 230291477 328769 74 2 155 4 0.0 Metagenome 3300010202 *Microbiome Permanent Draft Phototrophic microbial communities Littoral zone phototrophic microbial communities from Lake Waban, Wellesley, MA - FC R15b Marine Biological Laboratory 3300010202 Metagenome Analysis CLC released per JGI data release policy No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Lake Freshwater Sediment littoral 42.2876 -71.30117 38005046 43277 8 0 19 0 0.0 Metagenome 3300042840 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194 NMDC pilot DOE Joint Genome Institute (JGI) 3300042840 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040592 -106.9484972 827148011 2032551 516 20 1008 36 SRX5355401 0.0 Metagenome 3300019761 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - BB_6_MG DOE Joint Genome Institute (JGI) 3300019761 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Microbial mats Freshwater microbial mat 38.7906 -75.1644 311550901 572042 674 30 998 44 SRX3982509 Unrestricted 9.84 Metagenome 3300025980 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleC_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025980 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.107521 -121.649681 127819883 298376 252 11 412 13 SRX7146203 Unrestricted 0.0 Metagenome 3300064910 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 703 in Westerose, Alberta, Canada - S00JY_0419 Microbiome Insights 3300064910 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.55466504 -113.5615402 140726851 201774 63 0 110 0 0.0 Metagenome 3300029932 *Microbiome Permanent Draft Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong - Raw_water_201207A University of Hong Kong 3300029932 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Drinking water Freshwater Unclassified Drinking water treatment plant 96201218 234366 93 9 194 16 SRX390517 0.0 Metagenome 3300036878 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-1-X0 DOE Joint Genome Institute (JGI) 3300036878 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0474 481019940 788967 159 1 241 5 SRX8137207 Unrestricted 14.37 Metagenome 3300060422 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210602_06_21 DOE Joint Genome Institute (JGI) 3300060422 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 992802085 1462346 282 143 382 191 Unrestricted 23.44 Metagenome 3300007139 *Microbiome Permanent Draft Cephalotes ants gut microbiomes Ant gut microbial communities from Cephalotes pellans, Brazil Harvard University 3300007139 Metagenome Analysis IDBA-UD released by Yi Hu Yes Yes pl356@drexel.edu, yihu.bnu@gmail.com Piotr Lukasik, Yi Hu No Host-associated Arthropoda: Insects Gut Digestive system Unclassified ant gut 142326709 297935 34 1 52 3 0.0 Metagenome 3300007666 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765074482 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007666 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 134307418 211707 123 0 156 0 0.0 Metagenome 3300018422 *Microbiome Permanent Draft Populus soil microbial communities from riparian zone of different river systems in the western United States Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T DOE Joint Genome Institute (JGI) 3300018422 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jen.schweitzer@utk.edu Jennifer Schweitzer No Environmental Terrestrial Riparian zone Soil Unclassified soil 37.9813 -109.5168 5512096557 12150038 3017 90 5108 193 SRX4808884 Unrestricted 6.73 Metagenome 3300021416 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Coastal seawater microbial communities from Marineland, Florida, United States - SWPA TP1 #2 DOE Joint Genome Institute (JGI) 3300021416 Metagenome Analysis spades v. 3.11.1-check Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6703 -81.2145 229884227 347165 199 1 228 1 SRX3985552 Unrestricted 43.75 Metagenome 7000000126 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763982056 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000126 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 62410203 118570 0 0 0 0 0.0 Metagenome 3300016635 *Microbiome Permanent Draft Microbial communities associated with sugarcane Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A10 Universidade Estadual de Campinas 3300016635 Metagenome Analysis Spades released by JGI data releasing policy No Yes scs.rafael@gmail.com Rafael Souza No Host-associated Plants Rhizosphere Roots Unclassified rizhosphere -22.8187222 -47.05896667 14371273 18974 11 0 7 0 0.0 Metagenome 3300027798 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027798 Metagenome Analysis spades v. 3.11.1 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 863754171 1935433 344 74 560 139 SRX2564971 Unrestricted 0.0 Metagenome 2009439003 *Microbiome Draft Hot spring microbial communities from Bison Spring, Yellowstone National Park, USA, analyzing thermal gradients 1_050719N DOE Joint Genome Institute (JGI) 2009439003 Metagenome Analysis lucy / pga No Yes eshock@asu.edu Everett Shock No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6 -110.9 7.55 26884788 40864 16 0 45 0 Unrestricted 0.0 Metagenome 3300030331 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_122 - TARA_R100000657 CEA Genoscope 3300030331 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -8.9971 -139.1963 242167677 490750 31 0 55 1 0.0 Metagenome 3300070478 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_004-M-20200114-COMP-DNA1 Battelle Memorial Institute 3300070478 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 19.557778 -155.230067 4.75-5.44 11351724 36652 43 3 81 11 0.0 Metagenome 3300038805 *Microbiome Permanent Draft Sludge microbial communities from anaerobic digestion of cattle manure in bioreactor, Technical University of Denmark, Kongens Lyngby, Denmark Sludge microbial communities from anaerobic digestion of cattle manure in bioreactor, Technical University of Denmark, Kongens Lyngby, Denmark - mesophilic pre H2 Technical University of Denmark 3300038805 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Bioreactor Unclassified Anaerobic Unclassified sludge 55.78829 12.52682 738675734 1082255 897 0 1205 0 0.0 Metagenome 3300028894 *Microbiome Permanent Draft Axial Seamount Reassemblies Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS906_Marker113_DNA IDBA_UD reassembly Marine Biological Laboratory 3300028894 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes cfortunato@gmail.com; randerson@carleton.edu; elks@mit.edu Caroline Fortunato; Rika Anderson; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.92274 -129.988104 220336933 482588 521 17 941 39 0.0 Metagenome 3300008127 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765337473 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008127 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 50934335 90908 45 0 62 0 0.0 Metagenome 3300002429 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP02-I2 3300002429 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300002854 *Microbiome Permanent Draft Lignocellulose-degrading enriched microbial communities from Concordia, Entre Rios, Argentina Lignocellulose-degrading enriched microbial communities from Concordia, Entre Rios, Argentina - CMC-Pine-T2-ill-ass INDEAR Instituto de Agrobiotecnologia Rosario 3300002854 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes reinert.md@gmail.com, marina.reinert@indear.com Marina Reinert No Engineered Lab enrichment Aerobic media Defined media Unclassified Lignocellulose-degrading enriched -31.372253 -58.116672 513342355 691888 415 3 778 2 0.0 Metagenome 3300040804 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Salins du Lion, Vitrolles, France - D98 Genopole Toulouse Midi-Pyrenees 3300040804 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.45 5.2264 281281444 545549 287 16 525 25 0.0 Metagenome 3300020484 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 8OCT2008 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020484 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 33830126 81384 51 19 105 27 SRX3308510 Unrestricted 0.0 Metagenome 3300025890 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025890 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Pelagic marine 54.184167 7.9 1223297760 2443370 648 143 1160 200 SRX802076 Unrestricted 0.0 Metagenome 3300005852 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter B (PS_B) MetaG (SPADES assembly) (version 2) DOE Joint Genome Institute (JGI) 3300005852 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, jim.fredrickson@pnnl.gov Natasha Ivanova, Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Thermal spring 44.376 -110.69 85136290 117344 60 0 63 0 SRX2577285 Unrestricted 0.0 Metagenome 3300001724 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP-146 DOE Joint Genome Institute (JGI) 3300001724 Metagenome Analysis Yes Yes mbsulli@gmail.com, sacinas@icm.csic.es; mbsulli@gmail.com Matthew Sullivan, Silvia G. Acinas; Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 37.133 -17.5322 64170145 132216 74 0 114 1 SRX4924343 Unrestricted 0.0 Metagenome 3300015240 *Microbiome Permanent Draft Microbial mat communities from high arctic lakes Freshwater microbial mat microbial communities from Canadian High Arctic Lake 9K, Kuujjuarapik, Canada - Sample L9Kc Laval University 3300015240 Metagenome Analysis IDBA_UD released by Adrien Vigneron No Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified microbial mat 55.275009 -77.758484 1268020347 5277835 1110 144 2282 159 0.0 Metagenome 3300001351 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic Microbial community sample from North Sea - COGITO 998_met_03 DOE Joint Genome Institute (JGI) 3300001351 Metagenome Analysis Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Pelagic marine 54.184167 7.9 453028312 889512 421 102 722 159 SRX802963 Unrestricted 0.0 Metagenome 3300069397 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - NIWO_040-O-20160828-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069397 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.05425 -105.58237 12418872 40708 70 10 130 8 0.0 Metagenome 3300045285 *Microbiome Permanent Draft Forest soil microbial communities from boreal-temperate forests in Minnesota, USA Forest soil microbial communities from Hubachek Wilderness Research Center, Ely, Minnesota, USA - Ely DRY DO K6 DOE Joint Genome Institute (JGI) 3300045285 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pankaj.trivedi@colostate.edu Pankaj Trivedi No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 47.55 -92.3 606398477 1022430 177 11 360 22 Unrestricted 16.32 Metagenome 3300044636 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME08Aug2018-rr0900 DOE Joint Genome Institute (JGI) 3300044636 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 986789197 1528722 418 74 561 97 Unrestricted 15.34 Metagenome 3300012995 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM2 DOE Joint Genome Institute (JGI) 3300012995 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Fungi Unclassified Mycelium Unclassified fungus garden -21.168 -47.846 187167002 343216 190 2507 372 4893 Unrestricted 150.6 Metagenome 3300012420 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100711 University of Pennsylvania 3300012420 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4190335 5948 1 2 2 2 SRX756139 0.0 Metagenome 3300014734 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01385 Weill Cornell Medical College 3300014734 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.63 -74.01 28008485 43398 20 0 25 0 SRX823325 0.0 Metagenome 3300056707 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.4C.15 SIP fraction DOE Joint Genome Institute (JGI) 3300056707 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 92350450 176912 127 8 203 15 Unrestricted 13.34 Metagenome 3300043643 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 262-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043643 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9805 -107.04 368435842 1059698 391 13 710 19 Unrestricted 6.1 Metagenome 3300026832 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus triangulatus BAHAMAS.2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026832 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 63868691 107396 10 2 13 6 SRX3340581 Unrestricted 0.0 Metagenome 3300047171 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Southern Region, Iceland - Sphagnum girgensohnii 12_GIR_ICE DOE Joint Genome Institute (JGI) 3300047171 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.1122 -20.5608 987804134 1405168 280 67 367 100 SRX14787153 Unrestricted 14.13 Metagenome 3300039978 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Barrow Environmental Observatory, Tundra, AK, USA - BARR_004-O-20170809-COMP-DNA1 Battelle Memorial Institute 3300039978 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 71.28241 -156.61936 18618844 53830 75 4 128 12 0.0 Metagenome 7000000390 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764305738 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000390 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 23035264 43161 0 0 0 0 0.0 Metagenome 3300027399 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300027399 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 22638766 77548 105 2 166 4 SRX1990525 Unrestricted 0.0 Metagenome 3300007875 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 159591683 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007875 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 2284073 6555 8 0 6 0 SRX022927, SRX022926 0.0 Metagenome 3300070871 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_003-M-20190717-COMP-DNA2 Battelle Memorial Institute 3300070871 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.118581 -99.239944 7.27-7.67 10439660 30511 47 4 94 7 0.0 Metagenome 3300028984 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 263_B Beijing Genomics Institute (BGI) 3300028984 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 38485711 42924 27 0 38 0 ERX491038 0.0 Metagenome 3300027501 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_17_M020 (SPAdes) DOE Joint Genome Institute (JGI) 3300027501 Metagenome Analysis spades v. 3.11.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 267369977 593062 298 45 466 69 SRX2570680 Unrestricted 0.0 Metagenome 3300009174 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG DOE Joint Genome Institute (JGI) 3300009174 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 3489858986 7204848 2299 165 3854 302 SRX3203321 Unrestricted 0.0 Metagenome 3300022682 *Microbiome Permanent Draft Carpinteria Salt Marsh Metagenomes 2014 to 2017 Sediment microbial communities from marsh intertidal zone in Carpinteria, CA, United States - S4 University of California, Irvine 3300022682 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Aquatic Intertidal zone Marine Sediment Sediment 34.401 -119.534 23915269 27232 12 0 13 1 0.0 Metagenome 3300041477 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover leaf microbial community from Lincoln, Canterbury, New Zealand - WCL18_10 MetaG AgResearch, New Zealand, Mosgeil 3300041477 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 613221388 1013289 190 51 689 125 0.0 Metagenome 3300025684 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025684 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 490620767 900519 492 196 709 321 SRX2569217 Unrestricted 0.0 Metagenome 3300033394 *Microbiome Permanent Draft Metagenomic SGS 2x251 Riparian soil bacterial communities from Cottonwood Creek Park, Encinitas, CA, USA - R13 Illumina 3300033394 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Riparian soil Soil 33.051604 -117.289363 313344624 1126890 230 12 458 40 0.0 Metagenome 3300005225 *Microbiome Permanent Draft Microbial communities from the Yellowstone National Park, bulk metagenomes as controls for mini-metagenomic methods Hotspring Microbial Communities from Lower Geyser Basin, Spring Unknown 43 (Mound Spring), Yellowstone National Park, Wyoming, USA - Sample 3, bulk metagenomes as controls for mini-metagenomic methods Stanford University 3300005225 Metagenome Analysis SpadeV3 released per JGI data release policy No Yes brianyu@stanford.edu, brian.yu@czbiohub.or Brian Yu No Environmental Aquatic Near-boiling (>90C) Thermal springs Alkaline hotspring 44.564833 -110.86325 93020691 168982 142 0 224 0 0.0 Metagenome 3300065610 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 802 in Cardston County, Alberta, Canada - S00JY_0433 Microbiome Insights 3300065610 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.264899 -113.060598 131401178 202186 65 0 113 0 0.0 Metagenome 3300025353 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH06Jun08 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025353 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 53095998 123791 33 18 49 27 SRX2565405 Unrestricted 0.0 Metagenome 3300049365 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC32 DOE Joint Genome Institute (JGI) 3300049365 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 242517187 590760 380 10 829 13 Unrestricted 26.89 Metagenome 3300064922 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 728 in Hairy hill, Alberta, Canada - S00JY_0744 Microbiome Insights 3300064922 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.4621528 -112.0407692 14729536 22182 22 0 37 0 0.0 Metagenome 3300000919 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring microbial communities from Elkhorn Slough, Monterey Bay, USA - MD2A DOE Joint Genome Institute (JGI) 3300000919 Metagenome Analysis Recovered at the request of Tijana Glavina del Rio (Sep 15, 2015) Yes Yes jim.fredrickson@pnnl.gov, jim.fredrickson@pnnl.gov; pettridge2@llnl.gov Jim Fredrickson, Jim Fredrickson; Jennifer Pett-Ridge Yes 29167704 Environmental Aquatic Intertidal zone Marine Estuary: Microbial mat Hypersaline mat 36.83 -121.785 173570670 399161 263 15 432 39 SRX2879537 0.0 Metagenome 3300014111 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room gowning area microbial communities from NASA Jet Propulsion Laboratory, California, USA - Floor swab, replicate B, treated with PMA SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300014111 Metagenome Analysis SPAdes 3.10.0 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1991 -118.1715 756021 1473 0 0 2 1 Unrestricted 0.0 Metagenome 3300037866 *Microbiome Permanent Draft Seawater and sediment microbial communities from various locations Seawater microbial communities from eastern tropical North Pacific Ocean - AMALJGI-DNA-14 DOE Joint Genome Institute (JGI) 3300037866 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bbw@princeton.edu Bess Ward No Environmental Aquatic Oceanic Marine Unclassified seawater 16.0 -105.0 465141990 984955 396 215 652 323 SRX9400461 Unrestricted 11.17 Metagenome 3300049318 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA36 DOE Joint Genome Institute (JGI) 3300049318 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 756373145 2055824 630 4 1187 7 Unrestricted 7.13 Metagenome 3300019782 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MLB.S.N DOE Joint Genome Institute (JGI) 3300019782 Metagenome Analysis spades v. SPAdes version: 3.10.1 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.2382 -86.2805 814913 2303 12 5 11 6 Unrestricted 0.0 Metagenome 3300005905 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_105 DOE Joint Genome Institute (JGI) 3300005905 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 414020377 1388708 461 9 939 33 SRX2564562, SRX2581063 Unrestricted 0.0 Metagenome 3300006678 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2 of subject 159005010 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006678 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 126767300 166495 83 2 97 1 0.0 Metagenome 3300011686 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01028 Weill Cornell Medical College 3300011686 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.83 12602969 16748 6 0 14 0 SRX822990 0.0 Metagenome 3300003231 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-E DOE Joint Genome Institute (JGI) 3300003231 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 224825 744 8 3 22 6 SRX2575852 Unrestricted 0.0 Metagenome 3300021594 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA Downsampled Assembly University of Michigan 3300021594 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7026 -83.2538 9.29 174026356 341000 149 64 271 68 0.0 Metagenome 3300022809 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R8 Version 2 University of New South Wales 3300022809 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 104969727 191791 80 1 102 1 0.0 Metagenome 3300006333 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159227541 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006333 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 152794561 263922 214 0 297 1 0.0 Metagenome 3300002445 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP17-I1 3300002445 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300041784 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - TR_27_wk_2 DOE Joint Genome Institute (JGI) 3300041784 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9186 -107.036 180903008 522701 294 14 568 27 SRX14808257 Unrestricted 8.83 Metagenome 3300025198 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP0959 (SPAdes) DOE Joint Genome Institute (JGI) 3300025198 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -27.98 63.25 80141733 161253 84 39 148 45 SRX1982768 Unrestricted 0.0 Metagenome 3300042467 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Aug2014-rr0465 DOE Joint Genome Institute (JGI) 3300042467 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1145502293 1821487 401 87 591 107 Unrestricted 17.7 Metagenome 3300036525 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C6-9C DOE Joint Genome Institute (JGI) 3300036525 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 193638904 584986 342 8 636 13 SRX8806944 Unrestricted 5.03 Metagenome 3300008419 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 764811490 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008419 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 4570870 5858 11 0 10 0 0.0 Metagenome 3300011137 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01320 Weill Cornell Medical College 3300011137 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.81 -73.89 24575226 41116 20 0 28 0 SRX823260 0.0 Metagenome 3300048091 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere DOE Joint Genome Institute (JGI) 3300048091 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5876 -123.1939 582796494 884493 203 56 334 60 Unrestricted 37.64 Metagenome 3300026759 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3w-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026759 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 23962983 78725 106 2 191 7 SRX1991230 Unrestricted 0.0 Metagenome 3300013788 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS872 IDBA reassembly Marine Biological Laboratory 3300013788 Metagenome Analysis reassembly with IDBA-UD released by JGI data releasing policy No Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow deep sea hydrothermal vent diffuse flow 18.375 -81.797 50329742 54261 34 0 39 0 0.0 Metagenome 3300014244 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 213_L1_2014-6-12 San Diego State University 3300014244 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 1911475 7208 16 8 49 25 0.0 Metagenome 3300004127 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-8-D DOE Joint Genome Institute (JGI) 3300004127 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 668558554 1883215 324 62 639 159 SRX2568496 Unrestricted 0.0 Metagenome 3300024894 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 2_LOW4 (SPAdes) DOE Joint Genome Institute (JGI) 3300024894 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 144539946 301743 88 0 148 0 SRX2719628 Unrestricted 0.0 Metagenome 3300037223 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 S-1-M DOE Joint Genome Institute (JGI) 3300037223 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 905626860 1730229 366 37 618 59 SRX8148591 Unrestricted 8.87 Metagenome 3300009347 *Microbiome Permanent Draft Microbial communities in swimming pool backwashes Microbial communities from sand-filter backwash in Singapore swimming pools - JW-1 Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300009347 Metagenome Analysis megahit released per JGI data release policy Yes Yes martintayqx@gmail.com Martin Tay No Engineered Built environment Unclassified Unclassified Unclassified Swimming pool sandfilter backwash 1.28967 103.85007 502681472 1047668 700 149 1070 226 0.0 Metagenome 2077657015 *Microbiome Finished Sulfur spring sediment and crust microbial communities from Zodletone, Oklahoma, USA Sulfur spring sediment and crust microbial communities from Zodletone, Oklahoma, USA - B3_filtered Mogene LC 2077657015 Metagenome Analysis none (individual reads) released per JGI data release policy No Yes aspain@ou.edu Anne M. Spain, Anne Spain No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Sulfur spring sediment and crust 35.100293 -98.749601 6.68-7.05 9312770 19889 0 0 0 0 0.0 Metagenome 3300060410 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210527_00_13 DOE Joint Genome Institute (JGI) 3300060410 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 671909798 956738 224 169 283 233 Unrestricted 31.16 Metagenome 3300018410 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011510BT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300018410 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1274474705 2856070 1429 86 2786 148 SRX4070917 Unrestricted 22.85 Metagenome 3300002506 *Microbiome Permanent Draft Lamellibrachia satsuma associated microbial communities from Kagoshima Bay, Japan Lamellibrachia satsuma endosymbiont metagenome-1368 Theragen Bio Institute 3300002506 Metagenome Analysis de novo assembly Please release these metagenomes for public. Thank you for your help and service. Yes Yes patraajitkumar@gmail.com Ajit Kumar Patra No Host-associated Annelida Trophosome Intracellular endosymbionts Unclassified Lamellibrachia satsuma endosymbiont 31.663611 130.774722 7362225 6984 2 2 2 2 0.0 Metagenome 3300005739 *Microbiome Permanent Draft Cyanobacterial Bloom Metagenomics Project Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300005739 Metagenome Analysis CLC Genomics Workbench released per JGI data release policy No Yes janelle@mit.edu, janelle@mit.edu; boonfei@ualberta.ca Janelle Thompson, Janelle Thompson; BOONFEI TAN No Environmental Aquatic Lake Freshwater Unclassified lake water 1.411221 103.905587 374045723 484345 84 8 123 7 0.0 Metagenome 3300014303 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleA_D1 DOE Joint Genome Institute (JGI) 3300014303 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.107521 -121.649681 270217193 700739 406 22 771 36 SRX7188790 Unrestricted 0.0 Metagenome 3300001432 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2 DOE Joint Genome Institute (JGI) 3300001432 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 10107795 23372 120 10 247 13 SRX1989939, SRX1989940, SRX1989941, SRX1989942 0.0 Metagenome 3300045007 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_500m_2014 DOE Joint Genome Institute (JGI) 3300045007 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 1335550921 2513952 1045 4 1770 3 Unrestricted 11.23 Metagenome 3300070364 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dead Lake, Alabama, USA - DELA_003-M-20160824-COMP-DNA1 3300070364 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 16008566 51012 76 8 128 10 0.0 Metagenome 3300013016 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in West Virginia, USA - MSEEL Well Study Marcellus 5H_2016_03_03 DOE Joint Genome Institute (JGI) 3300013016 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back deep subsurface 39.6018 -79.9761 24217903 43203 149 0 273 0 SRX3021893 Unrestricted 338.51 Metagenome 3300041542 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Bulk soil microbial community from Lincoln, Canterbury, New Zealand - BS17_1 MetaG AgResearch, New Zealand, Mosgeil 3300041542 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Environmental Terrestrial Unclassified Soil Agricultural land Dairy farm pasture soil -43.648506 172.343549 2312538749 5402920 449 52 1472 122 0.0 Metagenome 3300049719 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 E1 30-34 DOE Joint Genome Institute (JGI) 3300049719 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3544 19.0458 587366099 856454 209 1 300 1 Restricted 13.77 Metagenome 3300029075 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 150_4M Beijing Genomics Institute (BGI) 3300029075 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 27762416 34276 14 2 24 3 ERX490958 0.0 Metagenome 3300071087 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Arizona, USA - SRER_003-M-20170815-COMP-DNA1 3300071087 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 285017 1004 9 3 19 3 0.0 Metagenome 3300045771 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - S1-R1-A DOE Joint Genome Institute (JGI) 3300045771 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3555 19.0475 364613968 830829 225 69 386 124 Unrestricted 6.33 Metagenome 3300045936 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P26SSC2_191112_c DOE Joint Genome Institute (JGI) 3300045936 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 623333299 968902 190 0 302 0 SRX20650058 Unrestricted 12.04 Metagenome 3300020001 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - U1a2 DOE Joint Genome Institute (JGI) 3300020001 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9223 -106.954 322337973 693807 272 42 559 50 SRX3958506, SRX3958507 Unrestricted 0.0 Metagenome 3300026193 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF47B (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026193 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 289601091 608297 178 88 265 133 SRX2781818 Unrestricted 0.0 Metagenome 3300000294 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM326 Beijing Genomics Institute (BGI), Macrogen 3300000294 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 87074386 130080 393 0 556 1 0.0 Metagenome 3300002117 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A2-10 DOE Joint Genome Institute (JGI) 3300002117 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 4313299 14681 57 0 118 0 SRX1990507 Unrestricted 0.0 Metagenome 3300013367 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01176 Weill Cornell Medical College 3300013367 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.69 -73.86 27894720 53530 18 0 26 0 SRX823131 0.0 Metagenome 3300000473 *Microbiome Permanent Draft Honey bee gut microbial communities from West Haven, Conneticut, USA Honey bee gut microbial communities from West Haven, Conneticut, USA - Gilliamella SCG AB-598-I20 Broad Institute 3300000473 Metagenome Analysis released per JGI data release policy No Yes philipp.engel@yale.edu Philipp Engel No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Honey bee gut 32.2743 -110.9388 2777073 4490 37 0 4 0 0.0 Metagenome 3300048636 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from North Pacific Ocean - CTD-AT42-06-007-2500m-0.65 DOE Joint Genome Institute (JGI) 3300048636 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 9.83807 -104.29118 535554427 892239 287 57 467 81 Unrestricted 25.71 Metagenome 3300038952 *Microbiome Permanent Draft Lake microbial communities from Canada Sediment microbial communities from the Boreal Shield Ecozone, Canada - bottom sediment 06-126 metaSPAdes Genome Quebec 3300038952 Metagenome Analysis SPAdes v. 3.11.1 metaSPAdes mode released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Unclassified Sediment Unclassified Sediment 48.99124 -74.02811 1845511591 4313550 838 10 1604 24 0.0 Metagenome 3300024984 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_500_plan (SPAdes) DOE Joint Genome Institute (JGI) 3300024984 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 355043206 529140 101 200 111 30 SRX2770503 Unrestricted 0.0 Metagenome 3300047470 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere DOE Joint Genome Institute (JGI) 3300047470 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5883 -123.194 565206546 850971 232 53 345 61 Unrestricted 23.69 Metagenome 3300007528 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 160765029 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007528 Metagenome Analysis SPADES v3.7.0 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 1158079 4042 5 0 12 0 SRX023061, SRX023060 0.0 Metagenome 3300013389 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100162 University of Pennsylvania 3300013389 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 2820424 3311 10 3 6 3 SRX756370 0.0 Metagenome 3300070580 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_043-M-20190717-COMP-DNA1 Battelle Memorial Institute 3300070580 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 46.234247 -89.542459 5.48-5.72 13185558 40733 61 3 103 8 0.0 Metagenome 3300069502 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_034-M-20160811-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069502 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 28287719 99914 79 7 129 12 0.0 Metagenome 3300026646 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2015_2_5 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026646 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 8737893 11908 6 0 12 1 SRX2752459 Unrestricted 0.0 Metagenome 3300042535 *Microbiome Permanent Draft Sediment microbial communities from various environments and locations in Europe Sediment microbial communities from Pant River, United Kingdom - PantS (IMG v5.0) DOE Joint Genome Institute (JGI) 3300042535 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes o.eyice@qmul.ac.uk Ozge Eyice No Environmental Aquatic River Freshwater Sediment Sediment 52.0033 0.3211 598617081 1569660 935 4 1712 5 Unrestricted 8.35 Metagenome 3300005673 *Microbiome Permanent Draft Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia Enhanced biological phosphorus removal bioreactor viral communities from the University of Queensland, Australia - SBR4-V90401 Phage Sequencing University of Queensland 3300005673 Metagenome Analysis CLC 6.0 Released per Connor Skennerton (Sep 15, 2015) No Yes c.skennerton@gmail.com Connor Skennerton No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor lab-scale EBPR bioreactor -27.49999 153.012098 51929904 96147 30 1 63 4 0.0 Metagenome 3300026519 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in the Atlantic and Pacific Ocean Hydrothermal vent microbial communities from Mid Atlantic Ridge, Atlantic Ocean - 354-166 DOE Joint Genome Institute (JGI) 3300026519 Metagenome Analysis spades v. 3.11.1 Yes Yes pgirguis@oeb.harvard.edu Peter Girguis No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent 36.2297 -33.9011 577576218 929962 464 6 647 15 SRX4801604 Unrestricted 22.6 Metagenome 3300012121 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #1 DOE Joint Genome Institute (JGI) 3300012121 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 100145597 199664 97 3 196 5 SRX3241665 Unrestricted 0.0 Metagenome 3300044842 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R DOE Joint Genome Institute (JGI) 3300044842 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 14.75 -16.85 1396622636 2419638 577 69 880 86 Unrestricted 17.78 Metagenome 3300005338 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 DOE Joint Genome Institute (JGI) 3300005338 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 5663751459 15590375 3877 348 6463 695 SRX2832621 Unrestricted 0.0 Metagenome 3300003380 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S PM DOE Joint Genome Institute (JGI) 3300003380 Metagenome Analysis revert back to private per Christa Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 11532438 32818 168 20 314 30 SRX2574955 Unrestricted 0.0 Metagenome 3300056823 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - APS4_19C_TP2_16O DOE Joint Genome Institute (JGI) 3300056823 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 2419777329 3090050 514 158 664 242 Unrestricted 22.53 Metagenome 3300050297 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_59 DOE Joint Genome Institute (JGI) 3300050297 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -75.858 159.974 470447765 714130 121 22 157 33 SRX18236987 Restricted 27.43 Metagenome 3300035652 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS61_6 University of Hohenheim 3300035652 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 98671997 140687 113 0 178 0 0.0 Metagenome 3300026358 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B DOE Joint Genome Institute (JGI) 3300026358 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 153849322 405608 254 12 432 19 SRX4802678 Unrestricted 9.88 Metagenome 3300071069 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_049-M-20180716-COMP-DNA1 3300071069 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 6182111 20407 55 4 111 3 0.0 Metagenome 3300044259 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal system in Merced County, California, USA - LOSB1811-9-18-19 DOE Joint Genome Institute (JGI) 3300044259 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.9897 -120.8552 375301509 786439 289 55 470 64 Restricted 16.43 Metagenome 3300022661 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet fungal communities from Santa Barbara, California, USA - diluted pellet 2 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022661 Metagenome Analysis spades v. 3.11.1-check Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4204 -119.6671 3208928058 5839276 4323 23 5766 36 SRX3964289 Unrestricted 14.67 Metagenome 3300008973 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T8 (3) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2) Shell Corporation 3300008973 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 97971624 342939 136 0 315 0 0.0 Metagenome 3300029183 *Microbiome Permanent Draft Aquariaum water viral communities from Chicago, USA Aquariaum water viral communities from Chicago, USA - Caribbean Reef - CR2 Michigan State University 3300029183 Metagenome Analysis released Yes Yes No Environmental Aquatic Unclassified Aquaculture Unclassified Aquarium water 41.87 -87.61 37033702 88225 23 0 65 0 0.0 Metagenome 3300027608 *Microbiome Permanent Draft Freshwater lentic microbial communities from the great Laurentian Lakes, MI, USA for biogeochemical studies Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes) DOE Joint Genome Institute (JGI) 3300027608 Metagenome Analysis spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified Freshwater lentic 44.504638 -83.045851 351343719 790461 104 9 180 28 SRX2577337 Unrestricted 0.0 Metagenome 3300027487 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepB_8d DOE Joint Genome Institute (JGI) 3300027487 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 132997337 227924 126 9 190 20 SRX5245191 Unrestricted 12.6 Metagenome 3300018486 *Microbiome Permanent Draft Bovine feces microbial communities from beef and dairy calves in Davis, CA, USA Bovine feces microbial communities from dairy calf in Davis, CA, USA - DMJL001E re-assembly QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018486 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes jxnliu@ucdavis.edu Jinxin Liu No Host-associated Mammals Large intestine Digestive system Fecal feces 38.5449 -121.7405 128771791 208755 157 0 226 1 0.0 Metagenome 3300000712 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2 DOE Joint Genome Institute (JGI) 3300000712 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 10327562 34153 139 9 253 7 SRX1986446, SRX2021679, SRX1986447 Unrestricted 0.0 Metagenome 3300069467 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_001-M-20170802-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069467 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 209526931 605860 292 4 563 3 0.0 Metagenome 7000000182 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765640925 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000182 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 49067769 93368 0 0 0 0 0.0 Metagenome 3300053640 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - FS1.061018 DOE Joint Genome Institute (JGI) 3300053640 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.5325 -110.7972 8-9 234173222 601991 146 3 211 2 Unrestricted 76.41 Metagenome 3300000278 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM209 Beijing Genomics Institute (BGI), Macrogen 3300000278 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 129107158 281370 653 7 1035 9 0.0 Metagenome 3300032138 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8 DOE Joint Genome Institute (JGI) 3300032138 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Coastal Marine Unclassified seawater 36.6953 -122.3565 673620138 1079838 310 0 429 5 SRX6424015 Unrestricted 49.48 Metagenome 3300009980 *Microbiome Permanent Draft Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_219 metaG DOE Joint Genome Institute (JGI) 3300009980 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes esinger@lbl.gov; twoyke@lbl.gov Esther Singer; Tanja Woyke No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass associated 30.387 -97.7301 37953662 70197 14 30 25 61 SRX2524162 Unrestricted 0.0 Metagenome 3300001290 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - Naphthalene biodegradation metagenome 13C8doseC DOE Joint Genome Institute (JGI) 3300001290 Metagenome Analysis No Yes elm3@cornell.edu Eugene Madsen Yes 30051558 Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.292222 -73.604444 21115293 34247 14 1 15 2 Unrestricted 0.0 Metagenome 3300039008 *Microbiome Permanent Draft Florida Reef Tract Coral Disease Outbreak Coral surface microbial communities from Montastraea cavernosa, offshore reef, Ft. Lauderdale, FL, USA - McBI University of Florida 3300039008 Metagenome Analysis Megahit v. 1.1.4 released by Julie Meyer No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified coral surface 26.16 -80.1 492272102 651715 113 6 116 7 0.0 Metagenome 3300070756 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_041-M-20180530-COMP-DNA1 3300070756 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 13480791 42740 81 4 129 8 0.0 Metagenome 3300001405 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 DOE Joint Genome Institute (JGI) 3300001405 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 37411250 109547 73 16 133 34 SRX1987651 Unrestricted 0.0 Metagenome 3300006990 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG DOE Joint Genome Institute (JGI) 3300006990 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.21 -77.52 232504531 530713 4 0 8 1 SRX2927447 Unrestricted 0.0 Metagenome 2020350001 *Microbiome Permanent Draft Wastewater viral communities from wastewater treatment facility in Singapore Viral communities in wastewater treatment process (AD) University of Illinois, Urbana-Champaign 2020350001 Metagenome Analysis Newbler assembly was used released per JGI data release policy No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Wastewater Dissolved organics (anaerobic) Nutrient removal Unclassified Wastewater 1.332 103.756 29292896 73586 0 0 0 0 0.0 Metagenome 3300035066 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - T9-7 Autonomous University of Barcelona 3300035066 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 72189387 298492 535 0 947 0 0.0 Metagenome 3300038646 *Microbiome Permanent Draft Freshwater sediment microbial communities from Chandeleur Islands, USA Subtidal sediment core microbial communities from Chandeleur Islands, USA - JSubC1 University of Alabama 3300038646 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Wetlands Freshwater Sediment Subtidal sediment core 29.862806 -88.841194 14341904 42351 54 2 82 4 0.0 Metagenome 3300011610 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00817 Weill Cornell Medical College 3300011610 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.96 21859369 40384 20 0 31 0 SRX822783 0.0 Metagenome 7000000251 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 158479027 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000251 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 472262 1156 0 0 0 0 SRX023229, SRX023228 0.0 Metagenome 3300008632 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human saliva microbial communities from NIH, USA - visit 1, subject 763496533 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008632 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human 39.0042816 -77.1012173 61069668 125414 64 0 98 0 0.0 Metagenome 3300026952 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A2-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300026952 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 67595070 197476 167 5 273 4 SRX1990507 Unrestricted 0.0 Metagenome 3300033464 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - branched nodules DOE Joint Genome Institute (JGI) 3300033464 Metagenome Analysis spades v. 3.12.0 Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Host-associated Plants Nodule Roots Unclassified root nodules 34.06 -118.44 446629223 419555 23 25 31 43 SRX6453235 Unrestricted 102.64 Metagenome 3300021181 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O DOE Joint Genome Institute (JGI) 3300021181 Metagenome Analysis spades v. 3.10.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 3315190220 7221899 1008 120 1784 171 SRX4022443 Unrestricted 12.9 Metagenome 3300038519 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 E1 1-5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300038519 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0467 649263157 1530476 604 16 1075 19 SRX8138223, SRX8138222 Unrestricted 0.0 Metagenome 3300005932 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKG DOE Joint Genome Institute (JGI) 3300005932 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli, Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 565206648 1310891 557 2 926 3 SRX2839725 Unrestricted 0.0 Metagenome 3300027469 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK07-E (SPAdes) DOE Joint Genome Institute (JGI) 3300027469 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 19944295 67961 90 2 132 4 SRX2575263 Unrestricted 0.0 Metagenome 7000000460 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 764487809 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000460 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 193189475 288625 0 0 0 0 0.0 Metagenome 3300004003 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWA_D1 DOE Joint Genome Institute (JGI) 3300004003 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.015041 -122.501831 812493233 2302626 842 18 1706 32 SRX7142156 Unrestricted 0.0 Metagenome 3300001619 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF016 DOE Joint Genome Institute (JGI) 3300001619 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 9959739 27557 20 0 33 3 SRX2014327 Unrestricted 0.0 Metagenome 3300035317 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Eunicella verrucosa from Algarve, Portugal - EV03H Euk Molecular Research LP (MR DNA) 3300035317 Metagenome Analysis Metawrap workflow v. 1.0.5 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 4410408 3331 0 2 0 1 0.0 Metagenome 3300046812 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 soil DOE Joint Genome Institute (JGI) 3300046812 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121602 -123.270125 4.93 905968026 1457404 274 29 468 42 Unrestricted 13.11 Metagenome 3300057028 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M1L_20_22 DOE Joint Genome Institute (JGI) 3300057028 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0036317 -81.5659748 470383258 851650 333 1 692 3 Unrestricted 15.81 Metagenome 3300069489 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_031-M-20160718-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069489 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 68090504 218076 174 4 353 7 0.0 Metagenome 3300037821 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18B_3_0_1 mgh University of Alberta 3300037821 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 54084694 70291 20 0 21 0 0.0 Metagenome 3300002934 *Microbiome Permanent Draft Cephalotes varians microbial communities from the Florida Keys, USA Ant worker gut metagenome for colony PL005 Harvard University 3300002934 Metagenome Analysis released by Yi Hu Yes Yes pl356@drexel.edu, yihu.bnu@gmail.com Piotr Lukasik, Yi Hu No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Cephalotes varians 24.6333167 -81.3617833 179275164 317404 46 3 96 7 0.0 Metagenome 3300048500 *Microbiome Permanent Draft Marine and freshwater sediment microbial communities from various locations Freshwater sediment microbial communities from Lake Superior, Michigan, United States - Superior 4 (B) DOE Joint Genome Institute (JGI) 3300048500 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes smtechtm@mtu.edu Stephen Techtmann No Environmental Aquatic Sediment Freshwater Unclassified Freshwater sediment 46.9095 -86.5975 463991664 1212982 582 0 1025 0 Unrestricted 8.72 Metagenome 3300024471 *Microbiome Permanent Draft Permafrost microbial communities from glacier foreland in Svalbard, Norway Permafrost microbial communities from glacier foreland in Svalbard, Norway - ML310 KOREA POLAR RESEARCH INSTITUTE 3300024471 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes sarbjeet.niraula@mavs.uta.edu Sarbjeet Niraula No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 78.90414399 12.11109761 7.8 8566346 27649 49 3 99 3 0.0 Metagenome 3300001546 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 DOE Joint Genome Institute (JGI) 3300001546 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 377687899 975477 488 174 935 306 SRX1987166 Unrestricted 0.0 Metagenome 3300033002 *Microbiome Finished Crude oil contaminated agricultural soil mecrobial communities from various regions in India Soil microbial community from agricultural field in Dibrughar, Assam, India - D1 Eurofins Genomics India Pvt Ltd. 3300033002 Metagenome Analysis CLC genomics Workbench v. 9.5.2. statistics released by nandita das No Yes nanditadas753@gmail.com nandita das No Environmental Terrestrial Unclassified Soil Contaminated Soil 26.2006043 92.9375739 236084767 379494 57 14 102 16 0.0 Metagenome 3300038358 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI146_2018_oct_150m DOE Joint Genome Institute (JGI) 3300038358 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 187687312 392478 180 2 304 8 SRX9402610 Unrestricted 17.13 Metagenome 3300023260 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S197-509C-6 DOE Joint Genome Institute (JGI) 3300023260 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 181223566 495980 413 41 790 49 SRX4801418 Unrestricted 6.92 Metagenome 3300021578 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - E2014-0112-100LTR University of Michigan 3300021578 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified freshwater lake 41.76325 -83.332367 81619857 160903 39 51 46 88 0.0 Metagenome 3300042502 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Jun2014-rr0022 DOE Joint Genome Institute (JGI) 3300042502 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 930385730 1345532 278 36 396 40 Unrestricted 21.92 Metagenome 3300050139 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim3 60-64 DOE Joint Genome Institute (JGI) 3300050139 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.352963 19.04747 494737108 737158 186 2 272 3 Restricted 16.75 Metagenome 3300069535 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Taiga, AK, USA - HEAL_001-O-20160804-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069535 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.87569 -149.21334 53982765 151266 82 2 164 4 0.0 Metagenome 3300000552 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Hydrocarbon resource environments microbial communities from Canada and USA - Toluene degrading community from Alberta, Canada McGill University 3300000552 Metagenome Analysis released per user request No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 54.0 -114.0 0 0 0 0 0 0 0.0 Metagenome 3300020590 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Lodgepole_Yose_2 DOE Joint Genome Institute (JGI) 3300020590 Metagenome Analysis spades v. 3.10.1 Yes Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.6622 -119.6197 379244822 786873 21 90 24 95 SRX4002442 Unrestricted 42.96 Metagenome 3300011914 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S14-04-R University of California, Los Angeles 3300011914 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 63367975 97686 43 0 61 0 SRX869999 0.0 Metagenome 3300040780 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Etang de Berre, Marignane, France - D170 Genopole Toulouse Midi-Pyrenees 3300040780 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.4847 5.188 51118901 114710 122 18 215 37 0.0 Metagenome 3300003316 *Microbiome Permanent Draft Sugarcane root and bulk soil microbial communities from Ayr, Burdekin, Queensland Australia Sugarcane root Sample L1 3300003316 Metagenome Analysis CLC genomics workbench 7 released by JGI data releasing policy No Yes yun.yeoh@uqconnect.edu.au Yun Kit Yeoh No Host-associated Plants Unclassified Roots Unclassified Sugarcane root and bulk soil -19.733298 147.17873 408717008 575165 27 17 40 19 0.0 Metagenome 3300051201 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Butler, South Dakota, USA - 117_901_SD_DR_1m_c3_T0_16O DOE Joint Genome Institute (JGI) 3300051201 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 45.27223 -97.8369 1042460707 1609605 394 6 645 11 Restricted 14.08 Metagenome 3300049912 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2019 IH02_5cm DOE Joint Genome Institute (JGI) 3300049912 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.358 19.046 481832376 818403 338 0 652 0 Restricted 22.4 Metagenome 3300012166 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT660_2 DOE Joint Genome Institute (JGI) 3300012166 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9228 -106.9512 203014679 462385 273 16 549 44 SRX3368950 Unrestricted 0.0 Metagenome 3300029249 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011676-93 Beijing Genomics Institute (BGI) 3300029249 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 191520620 267354 167 0 239 0 0.0 Metagenome 3300012639 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100323 University of Pennsylvania 3300012639 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 28277926 55974 44 9 76 16 SRX756334 0.0 Metagenome 3300070649 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_006-M-20170721-COMP-DNA1 3300070649 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 5520202 17932 21 0 43 0 0.0 Metagenome 3300009890 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY2 University of New South Wales 3300009890 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 9772593 17603 5 0 17 0 0.0 Metagenome 3300013104 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG DOE Joint Genome Institute (JGI) 3300013104 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil corn rhizosphere 42.3948 -85.3738 3391615623 6990045 3296 383 5219 608 SRX3899937 Unrestricted 11.1 Metagenome 3300070516 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_047-M-20210311-COMP-DNA1 Battelle Memorial Institute 3300070516 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 37.101658 -119.734564 5.12-6.02 41934 151 4 2 9 2 0.0 Metagenome 3300002630 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A5-11 DOE Joint Genome Institute (JGI) 3300002630 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 425008 1451 30 2 49 1 SRX1991156 Unrestricted 0.0 Metagenome 3300029852 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37208R1 Beijing Genomics Institute (BGI) 3300029852 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 218317042 290312 216 0 288 0 0.0 Metagenome 3300028525 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_15MAY2017_LD1 DOE Joint Genome Institute (JGI) 3300028525 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 36387797 66749 9 19 12 28 SRX5345787 Unrestricted 34.49 Metagenome 3300056901 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F1P_50_52 DOE Joint Genome Institute (JGI) 3300056901 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9544076 -81.67361068 1715453918 2449393 645 2 978 1 Unrestricted 15.05 Metagenome 3300044677 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 101-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044677 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9275 -106.9742 1349243244 2952445 592 91 1090 150 Unrestricted 8.41 Metagenome 3300043045 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5CP15 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043045 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 51243038 106949 64 3 89 4 SRX8379427 Unrestricted 45.0 Metagenome 3300056697 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.5W.8 SIP fraction DOE Joint Genome Institute (JGI) 3300056697 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 127170887 242195 124 9 210 14 Unrestricted 19.71 Metagenome 3300037428 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037428 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 620650497 1077271 213 4 353 5 SRX4415368, SRX8128070 Unrestricted 0.0 Metagenome 3300009684 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG DOE Joint Genome Institute (JGI) 3300009684 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 46.8319 -72.5 966229105 1763370 733 115 1161 200 SRX2954970 Unrestricted 0.0 Metagenome 3300038759 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - ILB2 Michigan State University 3300038759 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 33.75307 -118.2206 27948000 76811 0 0 0 0 0.0 Metagenome 3300003089 *Microbiome Permanent Draft Acid mine drainage microbial communities from Carnoules, Gard, France Acid Mine Drainage microbial communities from Carnoules, Gard, France, bin 2 CEA Genoscope 3300003089 Metagenome Analysis Made public because these are downloaded from Genbank No Yes ipagani@lbl.gov Pelletier,E., Ionna Pagani No Environmental Aquatic Groundwater Freshwater Contaminated Acid mine drainage 43.303 6.188 3999759 4095 1 0 1 0 0.0 Metagenome 3300055466 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.1W.12 SIP fraction DOE Joint Genome Institute (JGI) 3300055466 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 73504080 120327 69 10 123 16 Unrestricted 11.88 Metagenome 3300006880 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 DOE Joint Genome Institute (JGI) 3300006880 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Host-associated Plants Rhizosphere Roots Soil Populus rhizosphere 35.8443 -83.9607 4650792848 13075666 2340 67 4050 158 SRX2843348 Unrestricted 0.0 Metagenome 3300043657 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 382-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043657 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9904 -107.0597 525675183 1301370 342 33 595 49 Unrestricted 7.79 Metagenome 3300020246 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX555934-ERR599105) CEA Genoscope 3300020246 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -8.7788 -17.9098 138026768 393016 174 21 267 35 0.0 Metagenome 3300025174 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 3 (version 2) DOE Joint Genome Institute (JGI) 3300025174 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 1424218018 2876075 1040 15 1840 15 SRX1984100 Unrestricted 0.0 Metagenome 3300007783 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human throat microbial communities from NIH, USA - visit 1, subject 763961826 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007783 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human 39.0042816 -77.1012173 96287721 144993 84 0 97 0 SRX024929 0.0 Metagenome 3300049914 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2013 MS1-MC_25cm DOE Joint Genome Institute (JGI) 3300049914 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.2128 19.0232 1441579238 2112563 622 1 975 1 Restricted 19.15 Metagenome 3300003407 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_750_plan DOE Joint Genome Institute (JGI) 3300003407 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 264251597 417208 106 29 193 56 SRX2867350, SRX2867351 Unrestricted 0.0 Metagenome 3300026650 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1120 (SPAdes) DOE Joint Genome Institute (JGI) 3300026650 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 3848355 12050 46 12 83 11 SRX1987160 Unrestricted 0.0 Metagenome 3300042504 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Sep2014-rr0504 DOE Joint Genome Institute (JGI) 3300042504 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1138774950 1795892 397 68 587 90 Unrestricted 16.83 Metagenome 3300000554 *Microbiome Permanent Draft Saline water microbial communities from Bras del Port Salterns, Alicante, Spain Saline water microbial communities from Bras del Port Salterns, Alicante, Spain - SS37 GATC-Biotech AG, Konstanz, Germany 3300000554 Metagenome Analysis released per PI No Yes redcancerbero@gmail.com, alm067@ucsd.edu Alvaro M. Plominsky No Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Unclassified Saline water 38.1923 -0.555207 0 0 0 0 0 0 0.0 Metagenome 3300011912 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01381 Weill Cornell Medical College 3300011912 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.62 -74.02 66141675 96916 29 0 45 0 SRX823321 0.0 Metagenome 3300017927 *Microbiome Permanent Draft Coastal wetland sediment microbial communities from the Mid-Atlantic and Southeast Atlantic Coast of USA, responding to salinity intrusion. Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4 DOE Joint Genome Institute (JGI) 3300017927 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Freshwater sediment 35.9061 -76.1569 594016570 1352252 623 8 1163 8 SRX4369752 Unrestricted 4.52 Metagenome 3300061121 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIIF1SW PMA-treated Jet Propulsion Laboratory, California Institute of Technology 3300061121 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 5151283 5639 4 4 5 5 SRX3244867, SRX3808505, SRX3244858, SRX3808512 0.0 Metagenome 3300050385 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - YNP_Soil_3 DOE Joint Genome Institute (JGI) 3300050385 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Adjacent soil Adjacent soil 44.7986 -110.7207 572139356 897661 141 57 178 102 Unrestricted 104.77 Metagenome 3300029429 *Microbiome Permanent Draft Oil enriched seawater microbial communities from Gulf of Mexico, USA Oil enriched seawater microbial communities from Gulf of Mexico, USA - BD02T6 Lawrence Berkeley National Laboratory 3300029429 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes Yes 28652349 Environmental Aquatic Oceanic Marine Oil-contaminated Oil enriched seawater 24.74 -88.37 138276283 280717 153 0 168 0 SRX1796703 0.0 Metagenome 3300013102 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG DOE Joint Genome Institute (JGI) 3300013102 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil corn rhizosphere 42.3948 -85.3738 2621305396 5674235 3721 363 5384 574 SRX4808492 Unrestricted 14.91 Metagenome 3300039861 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_002-M-20170627-COMP-DNA1 Battelle Memorial Institute 3300039861 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 24064230 64839 82 2 162 1 0.0 Metagenome 3300039147 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Natural salt marsh sediment microbial communities from Fingringhoe Range, United Kingdom - S FRNM 1A University of York 3300039147 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Natural salt marsh sediment 51.83015 0.9503 25448203 72834 70 1 108 1 0.0 Metagenome 3300029854 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37268R1 Beijing Genomics Institute (BGI) 3300029854 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 92851941 117809 74 0 116 0 0.0 Metagenome 3300028206 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS374 with 0.1UM filter - spades JGI facility at Oak Ridge National Laboratory 3300028206 Metagenome Analysis Spades v. 3.11.1 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 20132548 38050 12 5 17 4 SRX024780 0.0 Metagenome 3300018939 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - midlate stage, 9 hrs after wetting v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018939 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 308002196 635354 283 10 473 20 0.0 Metagenome 3300025626 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025626 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 412312784 733753 268 46 349 72 SRX2999989 Unrestricted 0.0 Metagenome 3300027155 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepA_8h DOE Joint Genome Institute (JGI) 3300027155 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 177111171 342714 151 22 244 19 SRX5245183 Unrestricted 16.25 Metagenome 3300043566 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains ecozone, Canada - Lake 08-181 Genome Quebec 3300043566 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.603455 -79.506646 1062666641 2471580 508 113 899 207 0.0 Metagenome 3300012038 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT800_2 DOE Joint Genome Institute (JGI) 3300012038 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8898 -106.9078 402672659 858946 372 26 738 42 SRX3539212 Unrestricted 0.0 Metagenome 3300009682 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC083_MetaG DOE Joint Genome Institute (JGI) 3300009682 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 39.88 -75.22 979830275 1703918 1147 5 1696 11 SRX2338909 Unrestricted 0.0 Metagenome 3300070968 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_001-M-20200728-COMP-DNA1 3300070968 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 38403593 111964 83 7 155 12 0.0 Metagenome 3300044301 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T76 D DOE Joint Genome Institute (JGI) 3300044301 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7465 -64.3385 375141354 892484 9 2 15 5 Unrestricted 35.35 Metagenome 3300050557 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_RHK2_3_to_RHK2 DOE Joint Genome Institute (JGI) 3300050557 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.153 -124.211 483101528 586499 106 75 182 112 Unrestricted 24.35 Metagenome 3300020426 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000378 (ERX555992-ERR599112) CEA Genoscope 3300020426 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -15.3216 43.2843 985386101 2472374 658 62 1172 109 0.0 Metagenome 3300055006 *Microbiome Permanent Draft Soil biocrust microbial and viral communities from model ecosystem in Berkeley Lab, California, USA Soil biocrust microbial communities from model ecosystem in Berkeley Lab, California, USA - 4hr_A DOE Joint Genome Institute (JGI) 3300055006 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sroux@lbl.gov Simon Roux No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil biocrust 37.87739 -122.250939 1544075802 2526044 776 21 1145 37 Restricted 31.91 Metagenome 3300001786 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR11_8A_Apr DOE Joint Genome Institute (JGI) 3300001786 Metagenome Analysis Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 42785308 74725 37 0 69 0 SRX3317983 Unrestricted 0.0 Metagenome 3300007911 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit number 3 of subject 159510762 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007911 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 10069147 20490 13 0 29 1 SRX023371 0.0 Metagenome 3300070915 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Colorado, USA - CPER_004-M-20210630-COMP-DNA1 3300070915 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 1018282738 2794294 791 22 1689 24 0.0 Metagenome 3300025172 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - Sed-PBS metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025172 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; wswingley@niu.edu Ramunas Stepanauskas; Wesley Swingley No Environmental Aquatic Creek Freshwater Sediment Freshwater sediment 41.6655 -87.5437 13-14 68057874 120254 58 2 88 1 SRX3296629 Unrestricted 0.0 Metagenome 3300037248 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_9 DOE Joint Genome Institute (JGI) 3300037248 Metagenome Analysis metaspades v. 3.13.0 Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 2658997900 4122903 385 15 601 23 SRX8240585 Unrestricted 13.86 Metagenome 3300021254 *Microbiome Draft Cattle and sheep rumen microbial communities from New Zealand, for comparative studies Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly DOE Joint Genome Institute (JGI) 3300021254 Metagenome Analysis SPADES 3.11.0 released per Natalia and Tijana Yes Yes cfan@lbl.gov; NNIvanova@lbl.gov Hei Fan; Natalia Ivanova No Host-associated Mammals Stomach Digestive system Rumen Cattle and sheep rumen -42.26 171.6 2300814014 4276088 1622 16 2773 36 0.0 Metagenome 3300031261 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1 DOE Joint Genome Institute (JGI) 3300031261 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 2494940321 4665732 1083 223 1710 324 SRX5799070, SRX5799069 Unrestricted 0.0 Metagenome 3300001065 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN344 DOE Joint Genome Institute (JGI) 3300001065 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 262414 772 18 1 32 2 SRX1986734 Unrestricted 0.0 Metagenome 3300030606 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125 (version 2) DOE Joint Genome Institute (JGI) 3300030606 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9888 -108.3994 2472396115 5218082 1300 28 2061 37 SRX5340339, SRX5340338 Unrestricted 0.0 Metagenome 3300035138 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0608M20 DOE Joint Genome Institute (JGI) 3300035138 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8962 -97.0386 501347574 1166958 521 1 861 13 SRX8257603 Unrestricted 8.09 Metagenome 3300000714 *Microbiome Permanent Draft Marine sediment microbial mat communities from the Bay of Concepcion, Chile delta proteobacterium str. anaconda Microbial Mats J. Craig Venter Institute (JCVI) 3300000714 Metagenome Analysis Newbler 2.6 released per JGI data release policy No Yes jugalde@ucsd.edu Juan Ugalde No Environmental Aquatic Oceanic Marine Sediment Marine sediment -36.608333 -73.01 11019705 16234 1 0 1 0 0.0 Metagenome 7000000184 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159611913 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000184 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 115997667 192166 0 0 0 0 0.0 Metagenome 3300001945 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Galapagos, Equador - GS026 J. Craig Venter Institute (JCVI) 3300001945 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Oceanic Marine Unclassified Marine 1.2641667 -90.295 63080825 112133 62 0 95 0 0.0 Metagenome 3300031450 *Microbiome Permanent Draft Rock endolithic microbial communities from Victoria Land, Antarctica Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud DOE Joint Genome Institute (JGI) 3300031450 Metagenome Analysis spades v. 3.12.0 Yes Yes selbmann@unitus.it Laura Selbmann Yes 32139564 Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock -77.87 160.75 1152383524 1872072 362 48 490 79 SRX5225344 Unrestricted 24.61 Metagenome 3300040540 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_002-M-20160721-COMP-DNA1 Battelle Memorial Institute 3300040540 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 2710323 8154 17 2 28 2 0.0 Metagenome 3300033180 *Microbiome Permanent Draft Soil and ectomycorrhiza microbial communities from Populus trichocarpa stands in riparian zones in the Pacific Northwest, United States Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM DOE Joint Genome Institute (JGI) 3300033180 Metagenome Analysis spades v. 3.13.0 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Plants Unclassified Roots Unclassified ectomycorrhiza 45.654 -122.839 1533841712 2414310 312 91 421 134 SRX7519069 Unrestricted 25.38 Metagenome 3300035545 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B3.10_Sample3.Rodeo10.Well1210 DOE Joint Genome Institute (JGI) 3300035545 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 385106722 629277 366 1 513 0 SRX8353040 Unrestricted 36.35 Metagenome 3300001018 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -Nitrogen NN332 DOE Joint Genome Institute (JGI) 3300001018 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 55260 174 15 3 16 6 SRX3311729 Unrestricted 0.0 Metagenome 3300039415 *Microbiome Permanent Draft Terrestrial soil microbial communities from rice fields in China Terrestrial soil microbial communities from rice field in Xiaoshan, Kunmin, China - 49YXS Shanghai Personal Biotechnology Co., Ltd. 3300039415 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes xjzhang68@sjtu.edu.cn Xiaojun Zhang No Environmental Terrestrial Paddy field/soil Soil Unclassified Terrestrial soil 102.75 25.19 2597034499 5773621 1346 26 2337 53 0.0 Metagenome 3300049299 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA2 DOE Joint Genome Institute (JGI) 3300049299 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 334797037 851193 362 4 646 6 Unrestricted 6.92 Metagenome 3300032066 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18 DOE Joint Genome Institute (JGI) 3300032066 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1542858514 3741776 394 4 644 11 SRX5817907 Unrestricted 12.61 Metagenome 3300049610 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC27 DOE Joint Genome Institute (JGI) 3300049610 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 4752058 12824 35 1 75 0 Unrestricted 22.27 Metagenome 3300041655 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_50 MetaG AgResearch, New Zealand, Mosgeil 3300041655 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 748798775 1514196 420 29 999 43 0.0 Metagenome 3300050717 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water viral communities from Sandhills, Nebraska, United States - NSL_Border_2017_V DOE Joint Genome Institute (JGI) 3300050717 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.79185 -102.53404 318355472 884789 90 1 180 5 Unrestricted 94.32 Metagenome 3300007543 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3 DOE Joint Genome Institute (JGI) 3300007543 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.234 -123.9135 168514290 350526 319 103 532 151 SRX2753607 Unrestricted 6.07 Metagenome 3300036961 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - AD1 28 I DOE Joint Genome Institute (JGI) 3300036961 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 438445889 801555 472 3 782 4 SRX8361269 Unrestricted 20.26 Metagenome 3300027009 *Microbiome Permanent Draft Genome and metagenome analysis of marine red algae Porphyra Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male1 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027009 Metagenome Analysis spades v. 3.11.1 Yes Yes Brawley@maine.edu Susan Brawley No Host-associated Algae Unclassified Red algae Unclassified Marine 50.677 -3.24 171790898 237102 44 13 65 18 SRX2999535 Unrestricted 0.0 Metagenome 7000000000 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 1, subject 16040087 replicate 1 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000000 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 17554248 31763 0 0 0 0 SRX024632, SRX024631 0.0 Metagenome 3300008634 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765701615 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008634 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 153023900 222519 132 0 174 0 0.0 Metagenome 3300041967 *Microbiome Permanent Draft Grassland soil microbial communities from various locations in USA Grassland soil microbial communities from COBS,Iowa, USA - IA1 Fulgent Genetics 3300041967 Metagenome Analysis metaHipMer v. 1 released by JGI data releasing policy No Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Grasslands Grassland soil 41.92 -93.75 27288979847 55167213 5433 403 10273 645 0.0 Metagenome 3300026954 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - Naphthalene biodegradation metagenome 13C5doseB (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026954 Metagenome Analysis spades v. 3.11.1 Yes Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 38.5382364 -121.7639012 1323523 4491 2 0 7 0 Unrestricted 0.0 Metagenome 3300002932 *Microbiome Permanent Draft Cephalotes varians microbial communities from the Florida Keys, USA Cephalotes varians larva microbial communities from Drexel University, Philadelphia, USA - Larval gut metagenome for colony PL010 Harvard University 3300002932 Metagenome Analysis released per JGI data release policy Yes Yes pl356@drexel.edu, yihu.bnu@gmail.com Piotr Lukasik, Yi Hu No Host-associated Arthropoda: Insects Gut Larva Unclassified Cephalotes varians 39.956597 -75.189896 71822888 123600 24 2 43 4 0.0 Metagenome 3300032317 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 17-067 Genome Quebec 3300032317 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.131057 -68.666779 511168268 1113768 302 104 488 207 0.0 Metagenome 3300033004 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4 DOE Joint Genome Institute (JGI) 3300033004 Metagenome Analysis spades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified soil 26.5052 -80.2345 4288519697 9222409 1932 30 3203 73 SRX5666831 Unrestricted 7.27 Metagenome 3300023095 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L193-509B-2 DOE Joint Genome Institute (JGI) 3300023095 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 611536959 1350726 577 146 946 221 SRX4798555 Unrestricted 10.06 Metagenome 3300005934 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B DOE Joint Genome Institute (JGI) 3300005934 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 616798508 1778623 632 28 1100 50 SRX2776894 Unrestricted 0.0 Metagenome 3300041047 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - T5D8 IDBA-UD 60x Baseclear 3300041047 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 92227241 126110 133 5 215 7 0.0 Metagenome 3300046814 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 soil DOE Joint Genome Institute (JGI) 3300046814 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.588305 -123.194052 6.63 250069127 466552 215 19 393 24 Unrestricted 20.86 Metagenome 2140918008 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all DOE Joint Genome Institute (JGI) 2140918008 Metagenome Analysis Velvet released per Tijana's request (7/1/15) No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 410522816 696868 105 3 172 0 0.0 Metagenome 3300006245 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159490532 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006245 Metagenome Analysis SPADES v3.6.1 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 53629776 117822 55 0 103 0 0.0 Metagenome 3300042123 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0117W_E14_082716_2228 DOE Joint Genome Institute (JGI) 3300042123 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.9457 -103.6985 101626468 297390 224 8 396 11 Unrestricted 6.07 Metagenome 3300033507 *Microbiome Permanent Draft Sinkhole microbial mat communities from Lake Huron, Michigan, USA Sinkhole microbial mat communities from Lake Huron, Michigan, USA - SG0289 University of Michigan 3300033507 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy Yes Yes sgrim01@gmail.com Sharon Grim No Environmental Aquatic Sinkhole Freshwater Unclassified microbial mat 45.19843 -83.32721 197601168 241710 47 13 60 13 0.0 Metagenome 3300046031 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Brazos River, Texas, USA - NASQAN2014_024 DOE Joint Genome Institute (JGI) 3300046031 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 29.3496 -95.5824 145123140 364631 197 52 323 92 Unrestricted 0.0 Metagenome 3300011719 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00559 Weill Cornell Medical College 3300011719 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.66 -73.95 32513242 50804 23 0 28 0 SRX822526 0.0 Metagenome 3300042936 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Jun2013-rr0361 DOE Joint Genome Institute (JGI) 3300042936 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 791323542 1162301 185 33 256 48 Unrestricted 22.51 Metagenome 3300042771 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S1_0_10 NMDC pilot DOE Joint Genome Institute (JGI) 3300042771 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37229149 -119.2718121 108739484 272356 150 3 259 3 SRX2523203 0.0 Metagenome 3300051518 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - ATCR2D-21 DOE Joint Genome Institute (JGI) 3300051518 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 466553496 749960 426 40 581 48 Unrestricted 42.74 Metagenome 3300014695 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01465 Weill Cornell Medical College 3300014695 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.62 -73.96 42336752 77768 20 3 28 1 SRX823358 0.0 Metagenome 3300020461 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000401 (ERX556127-ERR599150) CEA Genoscope 3300020461 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -29.5023 37.9965 1332197836 3627431 574 64 1164 126 ERX556127, ERX556096, ERX556012 0.0 Metagenome 3300041544 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Bulk soil microbial community from Lincoln, Canterbury, New Zealand - BS17_5 MetaG AgResearch, New Zealand, Mosgeil 3300041544 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Environmental Terrestrial Unclassified Soil Agricultural land Dairy farm pasture soil -43.648506 172.343549 1381715585 3338283 352 48 1174 92 0.0 Metagenome 3300030454 *Microbiome Permanent Draft Human feces microbial communities from Tubingen, Germany Human feces microbial communities from Tubingen, Germany - B1 University of Tuebingen 3300030454 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 48.52 9.05 42570730 51575 57 0 53 0 0.0 Metagenome 3300039263 *Microbiome Permanent Draft Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada - diffuse fluids EMf7 Dalhousie University 3300039263 Metagenome Analysis Megahit v. 1.2.8 released by JGI data releasing policy No Yes smurdock@uvic.ca Sheryl Murdock No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Marine 47.9497 -129.0983 179677187 441668 133 30 252 43 0.0 Metagenome 3300005117 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F03 DOE Joint Genome Institute (JGI) 3300005117 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 53922522 81579 148 1 208 2 SRX3195090 Unrestricted 0.0 Metagenome 3300001710 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-35 DOE Joint Genome Institute (JGI) 3300001710 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 49.2831 -134.6656 55175319 77758 6 2 5 1 Unrestricted 0.0 Metagenome 3300020250 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000475 (ERX555986-ERR599129) CEA Genoscope 3300020250 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -31.0263 4.6977 184607006 482153 237 30 384 61 0.0 Metagenome 3300000292 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM305 Beijing Genomics Institute (BGI), Macrogen 3300000292 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 60141310 71826 236 0 337 0 0.0 Metagenome 3300060732 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Chase Lake Wetlands, North Dakota, USA - WOOD_003-M-20210708-comp-1 DOE Joint Genome Institute (JGI) 3300060732 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 47.118581 -99.239944 1297656637 2301112 517 14 920 26 Unrestricted 18.48 Metagenome 3300013548 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Human oral microbial communities from various locations - University of British Columbia - SCG40 University of British Columbia 3300013548 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Unclassified Human oral 552575 1377 2 0 9 0 SRX143149 0.0 Metagenome 7000000708 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159268001 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000708 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 111830154 194224 0 0 0 0 SRX023549, SRX023550 0.0 Metagenome 3300044844 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Oct2017-rr0292 DOE Joint Genome Institute (JGI) 3300044844 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 963823259 1433753 382 85 502 123 Unrestricted 16.97 Metagenome 3300004215 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 110_LOW13 DOE Joint Genome Institute (JGI) 3300004215 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 16521025 31268 23 0 31 0 SRX2721183 Unrestricted 0.0 Metagenome 3300045535 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mississippi River, Iowa, USA - NASQAN2011_282 DOE Joint Genome Institute (JGI) 3300045535 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 41.7805 -90.252 224768269 611973 299 136 501 178 Unrestricted 0.0 Metagenome 3300038954 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site1_salt_MV_3 DOE Joint Genome Institute (JGI) 3300038954 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Tidal flats microbial mat 20.7609 58.6478 1009483722 1457109 377 3 571 11 SRX9169492 Unrestricted 21.68 Metagenome 3300024982 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 15_LOW5 (SPAdes) DOE Joint Genome Institute (JGI) 3300024982 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 158114470 284060 66 0 101 0 SRX2720156 Unrestricted 0.0 Metagenome 3300047325 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Frasne, France - Sphagnum magellanicum 4C_MAG_FR DOE Joint Genome Institute (JGI) 3300047325 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 1586050646 3139164 698 162 1273 216 SRX14794121 Unrestricted 7.94 Metagenome 3300028961 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 527_12M Beijing Genomics Institute (BGI) 3300028961 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 71938018 84925 64 1 109 0 ERX491175 0.0 Metagenome 3300061639 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_004-O-20210726-comp-1 DOE Joint Genome Institute (JGI) 3300061639 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 40.043059 -105.581501 2493734710 3985886 580 160 690 190 Unrestricted 14.45 Metagenome 3300069504 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Woodworth, Northern Plains, ND, USA - WOOD_044-M-20170711-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069504 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12823 -99.24136 15622078 45794 50 4 112 5 0.0 Metagenome 2209111006 *Microbiome Permanent Draft Arabidopsis rhizosphere microbial communities from the University of North Carolina Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0 v1 DOE Joint Genome Institute (JGI) 2209111006 Metagenome Analysis Newbler and/or Velvet released based on JGI ITS No Yes sgtringe@lbl.gov, sgtringe@lbl.gov; dangl@email.unc.edu Susannah Tringe, Susannah Tringe; Jeff Dangl Yes 22859206 Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9 -79.05 154761297 433286 247 0 671 0 Unrestricted 0.0 Metagenome 3300053749 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHL_02 DOE Joint Genome Institute (JGI) 3300053749 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.40849 -82.168434 1078337775 1415933 28 56 61 47 Restricted 81.22 Metagenome 3300045148 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_1_C DOE Joint Genome Institute (JGI) 3300045148 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 154336364 178165 96 2 116 1 Unrestricted 156.72 Metagenome 3300039826 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 029_R1_022417 University of Maryland 3300039826 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.18963333 24.97614444 29057344 43824 36 0 53 0 0.0 Metagenome 3300013135 *Microbiome Finished Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India - point GR3 51 Life Technologies 3300013135 Metagenome Analysis Metavelvet v1.2.01 released by JGI data releasing policy No Yes sarkar.jayeeta12@gmail.com, psar@hijli.iitkgp.ernet.in Pinaki Sar No Engineered Built environment Petroleum sludge Oil refinery Unclassified petroleum sludge 26.18471 91.80725 253343795 1046188 674 6 1181 12 SRX2510723 0.0 Metagenome 3300043521 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime ecozone, Canada - Lake 07-240 Genome Quebec 3300043521 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.651541 -63.497262 1121773755 2503501 461 146 801 297 0.0 Metagenome 3300025661 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKS (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025661 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Lake water -68.4725 78.188 414688901 829803 308 0 518 2 SRX2839723 Unrestricted 0.0 Metagenome 3300004268 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio DOE Joint Genome Institute (JGI) 3300004268 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes sgtringe@lbl.gov, cpan@ou.edu Susannah Tringe, Chongle Pan No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 9.1086 -79.8436 703617339 2230090 374 23 893 43 SRX2779543 Unrestricted 0.0 Metagenome 3300035654 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from two oxygen tension regimens in Lake Washington, USA Freshwater lake sediment microbial communities from high oxygen tension regimen in Lake Washington, USA - HO rep. 1 week 5 - H1_5_WGA University of Washington 3300035654 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 47.631156 -122.254601 7655765 12974 5 0 7 0 0.0 Metagenome 3300028041 *Microbiome Permanent Draft Soil microbial communities from hillslopes of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-1-E_D DOE Joint Genome Institute (JGI) 3300028041 Metagenome Analysis spades v. 3.11.1 Yes Yes laurameredith@email.arizona.edu Laura Meredith No Engineered Artificial ecosystem Soil Mesocosm Unclassified soil 32.5788 -110.8509 342749751 706386 313 1 569 4 SRX5246424 Unrestricted 14.02 Metagenome 3300011559 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00766 Weill Cornell Medical College 3300011559 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.7 -73.95 20606258 35171 16 0 21 0 SRX822732 0.0 Metagenome 3300009568 *Microbiome Permanent Draft Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea North East Pacific Ocean microbial community - Bloomer_DOMexp_DOMadd_27hr_metagenome Massachusetts Institute of Technology 3300009568 Metagenome Analysis Greengenes NAST aligner, Ribosomal Database Project (RDP) naive Bayesian classifier released per JGI data release policy No Yes sarabc@mit.edu Sara Collins No Environmental Aquatic Epipelagic Marine Unclassified open ocean 23.214666 -159.136166 119219275 485530 582 11 1005 20 0.0 Metagenome 3300002225 *Microbiome Permanent Draft Marine microbial communities from the Santa Barbara Channel oil seeps Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Santa Barbara Oil Seep Sample 6 DOE Joint Genome Institute (JGI) 3300002225 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes mhess@lbl.gov, mhess@ucdavis.edu Matthias Hess Yes 25197496 Environmental Aquatic Oil seeps Marine Unclassified Marine 34.39225 -119.845662 572391776 1193420 684 24 1193 33 SRX2554728 Unrestricted 0.0 Metagenome 3300064924 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 730 in Mannville, Alberta, Canada - S00JY_0694 Microbiome Insights 3300064924 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.1127756 -111.0758746 38178980 57460 38 0 98 3 0.0 Metagenome 3300020815 *Microbiome Permanent Draft Metagenomes from anaerobic digester of solid waste Food waste microbial community from Durham, Ontario, Canada - FW2 megahit University of Toronto 3300020815 Metagenome Analysis Megahit v1.1.1 Yes Yes elizabeth.edwards@utoronto.ca; camillaln@gmail.com Elizabeth A. Edwards; Camilla Nesb? No Engineered Solid waste Unclassified Food waste Unclassified food waste 43.6629 -79.3957 941870975 1806178 420 147 681 248 SRX4986160, SRX4965141 0.0 Metagenome 3300032021 *Microbiome Permanent Draft Microbial communities from the deep biosphere Alkaline soil microbial communities from Cabeco de Vide, Portugal - POR_AC3_2013 re-assembly Marine Biological Laboratory 3300032021 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Unclassified Soil Unclassified Alkaline soil 39.23 -7.97 90320682 219097 117 0 186 7 0.0 Metagenome 3300017683 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_03OCT2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017683 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 229965051 420045 19 51 30 66 SRX3927221 Unrestricted 9.99 Metagenome 3300036926 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8CT15 DOE Joint Genome Institute (JGI) 3300036926 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 404811859 1031432 527 24 945 43 SRX8379635 Unrestricted 5.72 Metagenome 3300038650 *Microbiome Permanent Draft Marine microbial communities from Northern Baffin Bay, Arctic Ocean Marine microbial communities from Northern Baffin Bay, Arctic Ocean - scm_st115_2018 CEA Genoscope 3300038650 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy Yes Yes nastasia.freyria.1@ulaval.ca Nastasia Freyria No Environmental Aquatic Oceanic Marine Photic zone marine 76.58 -71.4 4534269161 12471937 4305 1842 4508 2991 0.0 Metagenome 3300001550 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from Lau Basin, Pacific Ocean Hydrothermal vent plume microbial communities from Lau Basin, Pacific Ocean - Lau MG2c_2 3300001550 Metagenome Analysis Velvet/1.2.07, MetaVelvet/1.2.02, Minimus2 released by JGI data releasing policy No Yes menli@umich.edu Meng Li No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 20.32 176.8 1853656 1619 1 0 1 0 0.0 Metagenome 3300045489 *Microbiome Permanent Draft Florida Reef Tract Coral Disease Outbreak Coral surface microbial communities from Montastraea cavernosa, offshore reef, Ft. Lauderdale, FL, USA - McD6 -2 University of Florida 3300045489 Metagenome Analysis MEGAHIT v. 1.1.4 released per PI No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified coral surface 26.16 -80.1 188586013 219729 66 2 72 7 0.0 Metagenome 3300040667 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Jones Ecological Research Center, Southeast, GA, USA - JERC_005-M-20170725-COMP-DNA1 Battelle Memorial Institute 3300040667 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.19484 -84.46861 1367509 4208 14 1 30 0 0.0 Metagenome 3300002905 *Microbiome Permanent Draft Contaminated subsurface sediment microbial communities from Dusseldorf, Germany, analyzing toluene degradation Tol210 3300002905 Metagenome Analysis released by JGI data releasing policy No Yes emnabouhajja@gmail.com Emna Bouhajja No Environmental Terrestrial Sediment Geologic Unclassified Contaminated subsurface sediment 51.21 6.46 26417 33 0 0 0 0 0.0 Metagenome 3300021592 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-5-6_MG DOE Joint Genome Institute (JGI) 3300021592 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.0114 -110.5956 93872894 234219 102 1 183 1 SRX3982333 Unrestricted 21.1 Metagenome 3300041782 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - C_35_wk_2 DOE Joint Genome Institute (JGI) 3300041782 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9936 -107.068 215099880 579613 256 18 461 35 SRX14808255 Unrestricted 7.5 Metagenome 3300009515 *Microbiome Permanent Draft Microbial Role in Biogeochemical Cycling in a Beach Aquifer System Microbial community of beach aquifer sediment core from Cape Shores, Lewes, Delaware, USA - CF-2 University of Delaware 3300009515 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes fielde14@ecu.edu Erin Field No Environmental Aquatic Unclassified Sediment Unclassified sediment 38.7855 -75.1045 743319428 1927007 624 33 1075 72 0.0 Metagenome 3300049686 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control DOE Joint Genome Institute (JGI) 3300049686 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 428275278 960257 605 34 1115 61 Unrestricted 12.77 Metagenome 3300059760 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1548A-3 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059760 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2319 -123.8812 145141383 313791 145 31 243 37 SRX2753629 Unrestricted 0.0 Metagenome 3300005445 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG DOE Joint Genome Institute (JGI) 3300005445 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 5018993808 13113649 3094 92 5341 185 SRX2745041 Unrestricted 0.0 Metagenome 3300019784 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D DOE Joint Genome Institute (JGI) 3300019784 Metagenome Analysis spades v. 3.10.1 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1881 -86.344 449037130 1065265 4 4 7 3 SRX8127177 Unrestricted 49.94 Metagenome 3300025809 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025809 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 693157016 1167631 326 71 433 132 SRX2999752 Unrestricted 0.0 Metagenome 3300040689 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_003-M-20170731-COMP-DNA1 Battelle Memorial Institute 3300040689 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 1047637 3227 28 2 43 3 0.0 Metagenome 3300022198 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3) (version 3) DOE Joint Genome Institute (JGI) 3300022198 Metagenome Analysis spades v. 3.11.1-check Yes Yes bcampb7@clemson.edu Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 38.9819 -76.3716 395860021 992120 0 0 2 0 SRX2935246, SRX3362802, SRX3362803 Unrestricted 0.0 Metagenome 3300031226 *Microbiome Permanent Draft Soil and ectomycorrhiza microbial communities from Populus trichocarpa stands in riparian zones in the Pacific Northwest, United States Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S DOE Joint Genome Institute (JGI) 3300031226 Metagenome Analysis spades v. 3.12.0 Yes Yes kpeay@stanford.edu Kabir Peay No Environmental Terrestrial Riparian zone Soil Trees stand soil 46.0356 -122.86 1802022555 4995532 1217 26 2147 50 SRX5650486 Unrestricted 8.24 Metagenome 3300003870 *Microbiome Permanent Draft Mixed lab enrichment methylotrophic culture microbial communities from coastal waters in Matosinhos, Portugal Mixed lab enrichment methylotrophic culture microbial communities from coastal waters in Matosinhos, Portugal - Culture W 3300003870 Metagenome Analysis NGEN released by JGI data releasing policy No Yes pmarco@ibmc.up.pt Paolo De Marco No Environmental Aquatic Coastal Marine Unclassified Mixed lab enrichment methylotrophic culture 41.1822 -8.7587 4529158 4562 1 0 1 0 0.0 Metagenome 3300014859 *Microbiome Permanent Draft Human bile duct microbial communities from gallstone patients in Hangzhou, China Human bile duct microbial communities from gallstone patients in Hangzhou, China - B4_bile Beijing Institution of Radiation Medicine 3300014859 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Biliary tract Digestive system Bile ducts: Bile Human bile duct 4259647 7708 0 9 0 6 SRX957022, SRX957035 0.0 Metagenome 3300049137 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S32_C_D45 hydrophilic DOE Joint Genome Institute (JGI) 3300049137 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 571229590 905022 252 17 374 25 Unrestricted 26.48 Metagenome 3300000645 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 15JUL2008 epilimnion DOE Joint Genome Institute (JGI) 3300000645 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 7000000309 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit number 3 of subject 158883629 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000309 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 76982824 136029 0 0 0 0 0.0 Metagenome 3300027300 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Colum_RepC_8d DOE Joint Genome Institute (JGI) 3300027300 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 160151929 290201 98 10 143 9 SRX5245323 Unrestricted 17.24 Metagenome 3300054676 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_43-s37 day 28 DOE Joint Genome Institute (JGI) 3300054676 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 124214158 183216 46 35 73 57 Unrestricted 264.2 Metagenome 3300001434 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in- M7 DOE Joint Genome Institute (JGI) 3300001434 Metagenome Analysis Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 617520 1964 73 6 142 4 SRX2553554 Unrestricted 0.0 Metagenome 3300070740 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_040-O-20170801-COMP-DNA1 3300070740 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 42909260 123845 87 3 138 5 0.0 Metagenome 3300006079 *Microbiome Permanent Draft Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea - fluid D Max Planck Institute for Plant Breeding Research 3300006079 Metagenome Analysis idba_ud v 1.1.1 released per JGI data release policy Yes Yes dmeier@mpi-bremen.de, dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Hydrothermal vents Marine Diffuse flow diffuse hydrothermal fluid -3.7282978 151.672495 325976007 598534 99 31 144 32 0.0 Metagenome 3300070362 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Alaska, USA - DEJU_047-M-20180621-COMP-DNA1 3300070362 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 62107297 184717 164 26 342 41 0.0 Metagenome 3300013879 *Microbiome Permanent Draft Microbial communities from methanogenic microcosms from oil petroleum samples laboratory microbial enrichments from Reconcavo Basin petroleum reservoir, Newcastle Upon Tyne, UK - 15 gl 50C L1 15gl 50C L1 UNIVERSIDADE DE SAO PAULO 3300013879 Metagenome Analysis METASPADES k=79 No Yes inatalia.sierra@gmail.com Isabel Natalia Sierra Garcia No Engineered Lab enrichment Anaerobic media Defined media Unclassified Laboratory microcosms 54.97825278 -1.61778056 28452774 55249 30 1 42 2 0.0 Metagenome 3300014242 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 263_L1_2014-9-19 San Diego State University 3300014242 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 2948138 6544 4 9 12 13 0.0 Metagenome 7000000591 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 158499257 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000591 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 5472197 12210 0 0 0 0 0.0 Metagenome 3300028133 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 10D DOE Joint Genome Institute (JGI) 3300028133 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 346228094 744903 249 17 426 27 SRX5171235 Unrestricted 23.27 Metagenome 3300004850 *Microbiome Permanent Draft Chicken cecum microbial communities from Brno, Czech Republic, of chickens treated with various antibiotics Chicken cecum microbial communities from Brno, Czech Republic, of chickens treated with various antibiotics - Tetracycline treated Masaryk University 3300004850 Metagenome Analysis IDBA released per JGI data release policy No Yes djurdjica.marosevic@gmail.com Durdica Marosevic No Host-associated Birds Large intestine Digestive system Ceca chicken cecum 49.19522 16.60796 57861213 116845 182 1 246 2 0.0 Metagenome 3300002739 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA DOE Joint Genome Institute (JGI) 3300002739 Metagenome Analysis Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.9082 -79.0499 71901864 137243 42 0 74 0 SRX1991090 Unrestricted 0.0 Metagenome 3300043314 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-364 Genome Quebec 3300043314 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.393416 -109.488322 1137019664 2341450 429 39 634 75 0.0 Metagenome 3300024892 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 7_HOW4 (SPAdes) DOE Joint Genome Institute (JGI) 3300024892 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 125911559 223339 85 6 93 8 SRX2720108 Unrestricted 0.0 Metagenome 3300042007 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 DOE Joint Genome Institute (JGI) 3300042007 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.8942 -103.685 778786959 1690141 646 40 1093 73 SRX14828593 Unrestricted 8.56 Metagenome 3300003178 *Microbiome Permanent Draft Black smoker hydrothermal chimney microbial communities from Manus Basin, Bismarck Sea 373C Max Planck Institute for Marine Microbiology 3300003178 Metagenome Analysis IDBA_UD released by Petra Pjevac No Yes ppjevac@mpi-bremen.de, pjevac@microbial-ecology.net Petra Pjevac Yes 29696004 Environmental Aquatic Hydrothermal vents Marine Black smokers Black smoker hydrothermal chimney -3.721194 151.674553 96159472 183758 47 1 65 2 0.0 Metagenome 3300020482 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 13SEPL2008 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020482 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 29508671 66978 38 10 82 20 SRX3310666 Unrestricted 0.0 Metagenome 3300005429 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV76 DOE Joint Genome Institute (JGI) 3300005429 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 689356343 1681122 820 15 1371 41 SRX2782315 Unrestricted 0.0 Metagenome 3300050543 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf microbial communities from Olympic Peninsula, Washington, USA - D0_RHK2_1 DOE Joint Genome Institute (JGI) 3300050543 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Alder tree leaf 48.153 -124.211 319055372 386803 96 55 159 88 Unrestricted 65.56 Metagenome 3300005854 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring microbial streamer communities from Conch Spring, Yellowstone National Park, USA - CON_C (SPADES assembly) (version 2) DOE Joint Genome Institute (JGI) 3300005854 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, binskeep@montana.edu; jim.fredrickson@pnnl.gov Natasha Ivanova, William P. Inskeep; Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Alkaline Hot spring 44.376 -110.69 82484636 161552 69 1 75 3 SRX3316453 Unrestricted 0.0 Metagenome 3300001722 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-50 DOE Joint Genome Institute (JGI) 3300001722 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 49.9998 -145.0 99016257 165016 93 0 121 1 Unrestricted 0.0 Metagenome 3300007717 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 159551223 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007717 Metagenome Analysis SPADES 3.6.1 released per Rekha Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 164858816 204019 128 0 202 0 0.0 Metagenome 3300009626 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP1 DOE Joint Genome Institute (JGI) 3300009626 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes rstepanauskas@bigelow.org; duane.moser@dri.edu Ramunas Stepanauskas; Duane Moser No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Thermal springs 36.96 -116.72 52872775 127422 93 4 190 3 SRX2948733 Unrestricted 0.0 Metagenome 3300022890 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #657 DOE Joint Genome Institute (JGI) 3300022890 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 196439047 433113 184 1 286 2 SRX4397135 Unrestricted 12.86 Metagenome 3300060695 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_006-O-20210804-comp-1 DOE Joint Genome Institute (JGI) 3300060695 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tundra Soil Unclassified Terrestrial soil 68.622127 -149.280182 2575568652 4252469 782 165 1298 248 Unrestricted 15.05 Metagenome 3300002852 *Microbiome Permanent Draft Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland, that are sulfate-reducing Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland - BIC-A1 borehole 3300002852 Metagenome Analysis Ray, k=41 released by JGI data releasing policy No Yes rizlan.bernier-latmani@epfl.ch Rizlan Bernier-Latmani Yes 27739431 Environmental Terrestrial Clay Deep subsurface Unclassified Deep subsurface 47.379 7.1648 7.5-8.5 97523688 206401 78 8 156 22 0.0 Metagenome 3300040802 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Salins du Lion, Vitrolles, France - D97 Genopole Toulouse Midi-Pyrenees 3300040802 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.45 5.2264 337887222 646567 344 19 618 41 0.0 Metagenome 3300012240 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100265 University of Pennsylvania 3300012240 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17241122 37614 21 0 33 1 SRX756636 0.0 Metagenome 3300042285 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA MBR feed microbial communities from membrane bioreactor in Denver, Colorado, USA - FD_D316 DOE Joint Genome Institute (JGI) 3300042285 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Wastewater Mine water Industrial wastewater Produced water MBR feed 39.7823 -104.9101 215356005 351363 238 1 302 4 Unrestricted 47.26 Metagenome 3300026834 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A1-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300026834 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 33838029 113471 101 1 225 3 SRX1990506 Unrestricted 0.0 Metagenome 3300004158 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 45_HOW7 DOE Joint Genome Institute (JGI) 3300004158 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 55282540 135430 46 2 92 3 SRX2720574 Unrestricted 0.0 Metagenome 3300070230 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_044-O-20190717-COMP-DNA1 3300070230 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 6441407 19702 27 4 50 3 0.0 Metagenome 3300014732 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01371 Weill Cornell Medical College 3300014732 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.64 -74.01 23468002 39072 11 0 22 0 SRX823311 0.0 Metagenome 3300002249 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP01-MA 3300002249 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300024961 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 43_HOW7 (SPAdes) DOE Joint Genome Institute (JGI) 3300024961 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 92847239 153208 63 9 80 11 SRX2720572 Unrestricted 0.0 Metagenome 3300034954 *Microbiome Permanent Draft Marine planktonic microbial communities from Bay of Bengal, Indian Ocean Marine planktonic microbial communities from Bay of Bengal, Indian Ocean - 3A (SRX5580381-SRR8790594) Nanyang Technological University 3300034954 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released by JGI data releasing policy Yes Yes flauro@ntu.edu.sg Federico Lauro No Environmental Aquatic Unclassified Marine Unclassified Marine planktonic 2.9 78.25 754547442 1593416 392 262 696 381 0.0 Metagenome 3300028982 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 350_B Beijing Genomics Institute (BGI) 3300028982 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 34244337 37794 15 0 31 0 ERX491105 0.0 Metagenome 3300009172 *Microbiome Permanent Draft Marine microbial communities from western Arctic Ocean Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 DOE Joint Genome Institute (JGI) 3300009172 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh Yes 30271971 Environmental Aquatic Oceanic Marine Unclassified Marine 73.2247 -150.2247 1289085034 2551052 634 390 1150 593 SRX2997168 Unrestricted 0.0 Metagenome 3300008215 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus leukodermatus Group 1 BERMUDA.1 DOE Joint Genome Institute (JGI) 3300008215 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 879915001 1061046 13 11 11 13 SRX2710288 Unrestricted 0.0 Metagenome 3300027979 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027979 Metagenome Analysis spades v. 3.11.1 Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0991 -99.1044 1136837725 2391847 767 9 1294 10 SRX2753791 Unrestricted 0.0 Metagenome 3300019477 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 6 Autonomous University of Barcelona 3300019477 Metagenome Analysis SPAdes 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 20903034 36552 39 1 47 2 0.0 Metagenome 3300025682 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS1_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025682 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 43.77 142.37 536123735 886855 467 4 580 3 SRX2157906 Unrestricted 0.0 Metagenome 3300024041 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 1-5 DOE Joint Genome Institute (JGI) 3300024041 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 41611474 137286 148 7 236 5 SRX4415325, SRX8127834 Unrestricted 0.0 Metagenome 3300000629 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 01OCT2007 hypolimnion DOE Joint Genome Institute (JGI) 3300000629 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300008268 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 158499257 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008268 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 226755297 320399 320 0 536 0 0.0 Metagenome 3300033392 *Microbiome Permanent Draft Metagenomic SGS 2x251 Riparian soil bacterial communities from Cottonwood Creek Park, Encinitas, CA, USA - R14 Illumina 3300033392 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Riparian soil Soil 33.051604 -117.289363 266993961 975392 223 23 488 43 0.0 Metagenome 3300020160 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erken, Sweden Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1 SciLifeLab 3300020160 Metagenome Analysis megahit v. 1.0.3 released per PI No Yes rhiannon.mondav@gmail.com Rhiannon Mondav Yes 28705963 Environmental Aquatic Lake Freshwater Unclassified Freshwater 59.83763399 18.6203826 851560054 1748345 623 200 912 338 0.0 Metagenome 3300022684 *Microbiome Permanent Draft Carpinteria Salt Marsh Metagenomes 2014 to 2017 Marine microbialite microbial communities from marsh intertidal zone in Carpinteria, CA, United States - T3 University of California, Irvine 3300022684 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Aquatic Intertidal zone Marine Microbialites Microbialites 34.401 -119.534 47095747 51280 21 9 24 4 0.0 Metagenome 3300039153 *Microbiome Permanent Draft Organic and conventional farm associated microbial communities from Canada and USA Wastewater microbial communities from Conventional dairy farm in Colorado, USA - WW29 Colorado State University 3300039153 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 40.7 -105.0 95402988 177298 116 0 215 2 0.0 Metagenome 3300017721 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaG DOE Joint Genome Institute (JGI) 3300017721 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -20.1 -70.419 168452323 407146 22 0 26 2 SRX7206735 Unrestricted 12.44 Metagenome 3300012596 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100498 University of Pennsylvania 3300012596 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 15037067 38391 12 0 22 0 SRX756500 0.0 Metagenome 3300036388 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_C1 DOE Joint Genome Institute (JGI) 3300036388 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 40724717 125267 193 14 350 14 SRX8396933 Unrestricted 4.37 Metagenome 2124908030 *Microbiome Permanent Draft Hypersaline water metagenomes of microbial communities from Lake Tyrrell, Victoria, Australia Hypersaline water microbial communities from Lake Tyrrell, Victoria, Australia, August 2007, sample A07AB all scaffolds J. Craig Venter Institute (JCVI) 2124908030 Metagenome Analysis Made public based on PI's request No Yes eallen@ucsd.edu Eric Allen Yes 24335829 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline water -35.2872 142.82568 51943846 52592 16 0 25 0 0.0 Metagenome 3300007557 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.715 DOE Joint Genome Institute (JGI) 3300007557 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 297039938 582542 324 41 521 86 SRX2753576 Unrestricted 7.74 Metagenome 3300039799 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountain National Park, Central Plains, CO, USA - RMNP_005-O-20170808-COMP-DNA1 Battelle Memorial Institute 3300039799 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.27591 -105.54592 35832621 93619 78 7 139 17 0.0 Metagenome 7000000674 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from the National Institute of Health, USA - subject 159490532, visit 2 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000674 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 63046801 123826 0 0 0 0 0.0 Metagenome 3300053239 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - W9NW8 DOE Joint Genome Institute (JGI) 3300053239 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 122976328 214064 157 43 267 50 Unrestricted 16.57 Metagenome 3300010204 *Microbiome Permanent Draft Phototrophic microbial communities Littoral zone phototrophic microbial communities from Lake Waban, Wellesley, MA - FCF4 Marine Biological Laboratory 3300010204 Metagenome Analysis CLC released per JGI data release policy No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Lake Freshwater Sediment littoral 42.2876 -71.30117 43377308 53178 8 0 26 0 0.0 Metagenome 3300041053 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - T4D6 IDBA-UD 100x Baseclear 3300041053 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 89567514 121874 91 12 146 12 0.0 Metagenome 3300036767 *Microbiome Permanent Draft Seawater and sediment microbial communities from various locations Seawater microbial communities from eastern tropical North Pacific Ocean - AMALJGI-DNA-7 DOE Joint Genome Institute (JGI) 3300036767 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bbw@princeton.edu Bess Ward No Environmental Aquatic Oceanic Marine Unclassified seawater 17.206 -110.7114 1594533021 3215812 1024 159 1891 241 SRX8377357 Unrestricted 17.62 Metagenome 3300026327 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_02_40cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026327 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 595433341 1006757 295 9 456 5 SRX2521036 Unrestricted 0.0 Metagenome 3300041761 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_489 MetaG AgResearch, New Zealand, Mosgeil 3300041761 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1119394032 2186497 284 35 1020 35 0.0 Metagenome 3300010343 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1 DOE Joint Genome Institute (JGI) 3300010343 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Wetlands Soil Unclassified Bog forest soil 51.62 -128.09 1844159588 3693823 1121 111 1882 190 SRX2521851 Unrestricted 0.0 Metagenome 3300065624 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 809 in Oyen, Alberta, Canada - S00JY_0146 Microbiome Insights 3300065624 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.10302812 -110.3235998 216582607 312155 71 0 115 0 0.0 Metagenome 3300018424 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300018424 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 2148444358 4639920 1512 112 2458 168 SRX4074063 Unrestricted 14.77 Metagenome 3300038563 *Microbiome Permanent Draft Forest soil microbial communities from temperate coniferous forests in USA and Canada Forest soil microbial communities from temperate coniferous forests in Canada - OC-OM3C0-M1 University of British Columbia 3300038563 Metagenome Analysis Yes Yes No Environmental Terrestrial Temperate forest Soil Mineral soil Forest soil 50.88 -120.35 30242158 83411 92 25 200 45 ERX697649 0.0 Metagenome 3300003581 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI073_LV_150m_DNA DOE Joint Genome Institute (JGI) 3300003581 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 112753245 222049 107 2 194 5 Unrestricted 0.0 Metagenome 3300029934 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 53_M Beijing Genomics Institute (BGI) 3300029934 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 124443021 161330 98 1 137 0 ERX491190 0.0 Metagenome 3300060424 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210603_07_05 DOE Joint Genome Institute (JGI) 3300060424 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 764069050 1111235 259 118 342 163 Unrestricted 22.51 Metagenome 3300043475 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 017-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043475 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9215 -106.9526 700027267 1632664 424 40 794 58 Unrestricted 7.77 Metagenome 3300053725 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 endosphere DOE Joint Genome Institute (JGI) 3300053725 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121462 -123.270441 466585361 618492 78 95 123 143 Unrestricted 0.0 Metagenome 3300028892 *Microbiome Permanent Draft Deep ocean water column microbial communities from Yap Trench, western Pacific Ocean Seawater microbial communities from Yap Trench, western Pacific Ocean - 37I-Yap-CTD03-5700m 2000bp_Newsun Novogene 3300028892 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Ocean trench Marine Unclassified seawater 9.83 138.48 267757423 319658 65 2 77 4 0.0 Metagenome 3300027413 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_54_BLW_10 (SPAdes) DOE Joint Genome Institute (JGI) 3300027413 Metagenome Analysis spades v. 3.11.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 280025802 564106 293 29 446 67 SRX2572737 Unrestricted 0.0 Metagenome 3300070381 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_004-O-20180710-COMP-DNA1 3300070381 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 4862709 16078 49 7 85 11 0.0 Metagenome 3300001663 *Microbiome Permanent Draft Wastewater treatment plant microbial communities from Luxembourg S3nonrrna 3300001663 Metagenome Analysis idba-tran released by JGI data releasing policy No Yes magdalena.calusinska@list.lu Magdalena Calusinska No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater treatment plant 49.514167 6.017925 7.29 5808448 21981 129 27 1068 105 0.0 Metagenome 2051223007 *Microbiome Permanent Draft Human fecal microbial communities from Orebro University Hospital, Sweden, of individuals with Crohns disease Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10375 University of Maryland School of Medicine 2051223007 Metagenome Analysis released per JGI data release policy No Yes cmfraser@som.umaryland.edu Claire Fraser No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 59.274717 15.230656 41065261 80130 0 0 0 0 0.0 Metagenome 3300044455 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 022-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044455 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9569 -106.9874 469449580 1180943 512 8 881 22 Unrestricted 6.5 Metagenome 3300049051 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - C19_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049051 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 377604063 934433 608 15 1151 12 Unrestricted 0.0 Metagenome 3300024926 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 40_LOW7 (SPAdes) DOE Joint Genome Institute (JGI) 3300024926 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 54787429 85295 23 0 43 0 SRX2720570 Unrestricted 0.0 Metagenome 3300029117 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021213-32 Beijing Genomics Institute (BGI) 3300029117 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 157510976 230667 162 2 252 6 0.0 Metagenome 3300004930 *Microbiome Permanent Draft Simulated microbial communities from King Abdullah University of Science and Technology Simulated microbial communities from King Abdullah University of Science and Technology - simArt49e Heinrich Heine University of Dusseldorf 3300004930 Metagenome Analysis SOAPdenovo released per JGI data release policy No Yes intikhab.alam@kaust.edu.sa intikhab alam No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 142826939 197291 33 0 139 0 0.0 Metagenome 3300035529 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B1.5_Sample1.Rodeo5.Well662 DOE Joint Genome Institute (JGI) 3300035529 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 87952754 136696 66 0 116 0 SRX8347887 Unrestricted 135.72 Metagenome 3300011200 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 6 - S13.3.30.a - transect 3, age 5 years, surface depth) University of Bristol 3300011200 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes EAEloeFadrosh@lbl.gov; maisie.nash@bristol.ac.uk; ama@envs.au.dk Emiley Eloe-Fadrosh; Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 79.10444444 12.27888889 7.33 16375348 44461 38 3 72 2 0.0 Metagenome 3300037339 *Microbiome Permanent Draft Sediment microbial communities from various lakes in Switzerland Sediment microbial communities from Lake Zug, Canton of Zug, Switzerland - LZug_38 DOE Joint Genome Institute (JGI) 3300037339 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mark.lever@usys.ethz.ch Mark Alexander Lever No Environmental Aquatic Lake Freshwater Sediment sediment 47.1639 8.4969 1233702263 2013146 499 0 820 0 SRX9147960 Unrestricted 17.68 Metagenome 3300049763 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control DOE Joint Genome Institute (JGI) 3300049763 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 178616579 413407 324 14 618 24 Unrestricted 14.22 Metagenome 3300025755 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Activated sludge bacterial and archeal communities from Konstanz, Germany to study Microbial Dark Matter (Phase II) - J533_phenol metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025755 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; Michael.Pester@dsmz.de Ramunas Stepanauskas; Michael Pester No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 47.6783 9.1412 7.2 786543 2504 3 0 5 0 Unrestricted 0.0 Metagenome 3300001929 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from the Tropical South Pacific Ocean - GS040 J. Craig Venter Institute (JCVI) 3300001929 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Oceanic Marine Unclassified Marine -4.498889 -105.07 610868 1093 1 0 1 0 0.0 Metagenome 3300032271 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada - Lake 06-167 Genome Quebec 3300032271 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 47.35195 -78.4418 570970387 1171433 349 82 539 158 0.0 Metagenome 3300057057 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M2P_60_62 DOE Joint Genome Institute (JGI) 3300057057 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0099406 -81.5672344 1282987207 2003807 607 2 1001 0 Unrestricted 15.37 Metagenome 3300048113 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_120425.NP2 DOE Joint Genome Institute (JGI) 3300048113 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 466240487 1000122 350 94 504 176 Unrestricted 24.93 Metagenome 7000000698 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159551223 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000698 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 114525782 203458 0 0 0 0 0.0 Metagenome 3300002075 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 DOE Joint Genome Institute (JGI) 3300002075 Metagenome Analysis Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn rhizosphere 42.3948 -85.3738 395291063 1095211 926 95 1703 136 SRX1990932 Unrestricted 0.0 Metagenome 3300000131 *Microbiome Draft Marine microbial communities from chronically polluted sediments in four geographic locations Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site MC sample ARG 02_11.3m DOE Joint Genome Institute (JGI) 3300000131 Metagenome Analysis released based on JGI ITS Yes Yes hdionisi@cenpat.edu.ar Hebe Dionisi No Environmental Aquatic Intertidal zone Marine Sediment Marine -54.810872 -68.295525 57529379 175656 203 28 372 36 Unrestricted 0.0 Metagenome 3300014939 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS66_6 University of Hohenheim 3300014939 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 68274437 132122 60 0 118 0 0.0 Metagenome 3300066295 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONA_059-M-20170809-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066295 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.11044 -96.61295 20138375 64025 96 9 193 11 0.0 Metagenome 3300006735 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG DOE Joint Genome Institute (JGI) 3300006735 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -12.999 -80.801 451532675 1020602 3 0 14 0 SRX2926262 Unrestricted 0.0 Metagenome 3300028767 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N1_1 DOE Joint Genome Institute (JGI) 3300028767 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 520159768 982142 401 60 626 100 SRX5357447 Unrestricted 0.0 Metagenome 3300011495 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01181 Weill Cornell Medical College 3300011495 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.69 -73.83 18908675 28289 17 0 18 1 SRX823136 0.0 Metagenome 3300017766 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D DOE Joint Genome Institute (JGI) 3300017766 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.2382 -86.2805 399077352 970841 8 6 18 5 SRX7205049 Unrestricted 0.0 Metagenome 3300011920 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00089 Weill Cornell Medical College 3300011920 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.98 71870677 112339 53 0 63 0 SRX822083 0.0 Metagenome 3300038327 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI149_2019_jan_100m DOE Joint Genome Institute (JGI) 3300038327 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 308886846 694816 255 45 403 86 SRX9402664 Unrestricted 9.85 Metagenome 3300070492 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_006-M-20180717-COMP-DNA1 Battelle Memorial Institute 3300070492 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Grasslands Soil Pasture Terrestrial soil 38.897609 -78.152007 5.66-5.96 14915274 48079 73 4 128 6 0.0 Metagenome 3300015256 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT333_16_10D DOE Joint Genome Institute (JGI) 3300015256 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9226 -106.9518 231180028 546888 316 19 630 36 SRX3780470 Unrestricted 4.48 Metagenome 3300027772 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027772 Metagenome Analysis spades v. 3.11.1 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 838203447 1697451 252 23 403 44 SRX2565048 Unrestricted 0.0 Metagenome 3300027218 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1546B-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027218 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2311 -123.8825 122132750 273205 192 43 274 65 SRX2753620 Unrestricted 0.0 Metagenome 3300048599 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Wood chips microbial communities from bioreactor in Golden, Colorado, USA - AB_TrOCs_2 DOE Joint Genome Institute (JGI) 3300048599 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Unclassified Wood chips 39.7555 -105.2211 1721019681 2072239 609 30 777 44 Unrestricted 33.19 Metagenome 3300002183 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Incubations 011-22A DOE Joint Genome Institute (JGI) 3300002183 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes janet.jansson@pnnl.gov, mlharmon_smith@lbl.gov; janet.jansson@pnnl.gov Janet Jansson, Miranda Harmon-Smith; Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.270939 -156.810374 321726994 766307 348 2 679 7 SRX1990925 Unrestricted 0.0 Metagenome 3300028789 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3 DOE Joint Genome Institute (JGI) 3300028789 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 1431705388 3276921 357 40 579 84 SRX5355875 Unrestricted 0.0 Metagenome 3300009661 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-062 DOE Joint Genome Institute (JGI) 3300009661 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Permafrost soil 68.6137 -149.3144 449892893 973668 582 4 1052 4 SRX2761075 Unrestricted 0.0 Metagenome 3300027265 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Enriched soil microbial communities from Old Woman Creek wetland in Ohio, USA - Methanotroph_Enrichment_5 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027265 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified Enriched soil 40.178 -81.073 252479944 413036 175 4 246 5 SRX2752460 Unrestricted 0.0 Metagenome 3300071013 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_010-M-20180529-COMP-DNA1 3300071013 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 17894221 54479 75 2 178 8 0.0 Metagenome 3300036892 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-M DOE Joint Genome Institute (JGI) 3300036892 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0473 968388469 1798216 285 22 524 42 SRX8137028 Unrestricted 9.51 Metagenome 3300007054 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 1, subject 16040088 replicate 2 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007054 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 30534751 41451 24 4 24 11 SRX024627, SRX024628 0.0 Metagenome 3300069285 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_001-O-20170711-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069285 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 45879032 131800 55 5 103 13 0.0 Metagenome 3300014093 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00645 Weill Cornell Medical College 3300014093 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.79 -73.96 37430043 52725 32 0 40 0 SRX822612 0.0 Metagenome 3300014705 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00335 Weill Cornell Medical College 3300014705 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.73 -74.0 59650166 96341 18 0 28 0 SRX822308 0.0 Metagenome 3300053081 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 soil DOE Joint Genome Institute (JGI) 3300053081 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121345 -123.270991 5.09 1243018715 2100041 416 23 709 33 Unrestricted 0.0 Metagenome 3300033888 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1 DOE Joint Genome Institute (JGI) 3300033888 Metagenome Analysis spades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0473 366449741 651526 122 3 200 2 SRX8137027, SRX8137026 Unrestricted 0.0 Metagenome 3300037457 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_051817_35_f DOE Joint Genome Institute (JGI) 3300037457 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 1553502985 2458655 454 8 730 8 SRX9161980 Unrestricted 15.45 Metagenome 3300046706 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 soil DOE Joint Genome Institute (JGI) 3300046706 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.587669 -123.193301 6.78 368421858 652719 248 30 505 47 Unrestricted 19.24 Metagenome 3300025515 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR11Jul_8B1 (SPAdes) DOE Joint Genome Institute (JGI) 3300025515 Metagenome Analysis spades v. 3.11.1 Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 70693268 111195 53 0 82 0 SRX3320906 Unrestricted 0.0 Metagenome 3300039374 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 258_B Beijing Genomics Institute (BGI) 3300039374 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 8349597 11478 9 0 4 0 ERX491033 0.0 Metagenome 3300009809 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S2_30_40 DOE Joint Genome Institute (JGI) 3300009809 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228379 -119.2717467 144425110 336564 196 3 378 4 SRX2523286 Unrestricted 0.0 Metagenome 3300039992 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONZ_045-M-20170712-COMP-DNA1 Battelle Memorial Institute 3300039992 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.10077 -96.56309 17562987 51029 90 9 157 13 0.0 Metagenome 3300013641 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01106 Weill Cornell Medical College 3300013641 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.93 11438328 16135 9 0 14 0 SRX823061 0.0 Metagenome 3300029445 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 027_10_27_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029445 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 289896627 387010 309 0 395 0 0.0 Metagenome 3300031282 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Leaf surface microbial communities from sunflower plants in UC Gill Tract Community Farm, Albany, California, United States - DLSL S.R1 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031282 Metagenome Analysis spades v. 3.12.0 Yes Yes icelab@berkeley.edu Steven Lindow No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf surface 37.8864 -122.2981 118483030 205671 111 2 164 6 SRX5295433, SRX5295432 Unrestricted 0.0 Metagenome 3300020509 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 14SEP2010 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020509 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 87375059 191958 94 41 148 57 SRX1989025 Unrestricted 0.0 Metagenome 3300025568 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWA_D1 (SPAdes) DOE Joint Genome Institute (JGI) 3300025568 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.015041 -122.501831 252516779 489329 228 1 352 3 SRX7142156 Unrestricted 0.0 Metagenome 3300000043 *Microbiome Draft Arabidopsis rhizosphere microbial communities from the University of North Carolina Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 young rhizosphere DOE Joint Genome Institute (JGI) 3300000043 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes sgtringe@lbl.gov, sgtringe@lbl.gov; dangl@email.unc.edu Susannah Tringe, Susannah Tringe; Jeff Dangl Yes 22859206 Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9 -79.05 81273565 240846 421 22 786 28 Unrestricted 0.0 Metagenome 3300038834 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample02 King Abdulaziz City for Science and Technology (KACST) 3300038834 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 17.39 40.54 47845047 116520 43 0 77 0 SRX1097576 0.0 Metagenome 3300043628 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 280-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043628 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9792 -107.0375 434599115 1097241 344 23 592 37 Unrestricted 6.44 Metagenome 3300020391 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000989 (ERX556130-ERR598967) CEA Genoscope 3300020391 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -29.6749 -101.2137 966715507 2248158 491 45 1063 105 0.0 Metagenome 3300049176 *Microbiome Permanent Draft Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama - S009_CH17_fluctuating_T0 DOE Joint Genome Institute (JGI) 3300049176 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes njbouskill@lbl.gov Nicholas Bouskill No Environmental Terrestrial Tropical forest Soil Bulk soil Soil 9.17936 -79.8296 588003670 1598662 338 12 672 32 Unrestricted 7.43 Metagenome 3300003194 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment Column3K1-90 454 Life Sciences 3300003194 Metagenome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.34346 40.479247 6-8 0 0 0 0 0 0 0.0 Metagenome 3300036982 *Microbiome Permanent Draft Sediment microbial communities from various lakes in Switzerland Sediment microbial communities from Lake Baldegg, Lucerne, Switzerland - LB_11 DOE Joint Genome Institute (JGI) 3300036982 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mark.lever@usys.ethz.ch Mark Alexander Lever No Environmental Aquatic Lake Freshwater Sediment sediment 47.1988 8.2602 723373147 1187503 388 8 620 12 SRX8398950 Unrestricted 15.51 Metagenome 3300008463 *Microbiome Permanent Draft Deep sea sediment microbial communities from the Gulf of Mexico Deep sea sediment microbial communities from the Gulf of Mexico - control with no oil added University of Texas, Austin 3300008463 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes derdner@utexas.edu, derdner@utexas.edu; hernando.bacosa@utexas.edu Deana Erdner, Deana Erdner; Hernando Bacosa No Environmental Aquatic Sediment Marine Unclassified sediment 28.0 -88.0 72151645 101160 36 4 54 6 0.0 Metagenome 3300022916 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_200_MG DOE Joint Genome Institute (JGI) 3300022916 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca; shallam@interchange.ubc.ca Sean Crowe; Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5847 -123.5008 845300929 1412810 590 3 862 9 SRX4482517 Unrestricted 28.43 Metagenome 3300022347 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL3WBGP3 JM42 AGRF 3300022347 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996531 115.533257 35493036 68526 31 0 46 0 0.0 Metagenome 2199034002 *Microbiome Permanent Draft Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene Soil microbial communities from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene -196 DOE Joint Genome Institute (JGI) 2199034002 Metagenome Analysis PGA released based on JGI ITS No Yes elbrodie@lbl.gov, ELBrodie@lbl.gov Eoin Brodie Yes 22378537 Engineered Bioremediation Chloroethene Tetrachloroethylene and derivatives Bioreactor Soil from Bioreactor 37.786111 -122.318611 30615378 43132 0 0 0 0 Unrestricted 0.0 Metagenome 3300026011 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_301 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026011 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 47110718 135802 104 2 212 3 SRX2564884, SRX2581056 Unrestricted 0.0 Metagenome 3300033998 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from deep shales in Oklahoma, United States - M1-7-1 DOE Joint Genome Institute (JGI) 3300033998 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back fracking water 35.784 -98.26 203557508 289971 248 3 298 1 SRX7525009 Unrestricted 385.65 Metagenome 3300029506 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI021990-20 Beijing Genomics Institute (BGI) 3300029506 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 100347031 140166 84 1 120 1 0.0 Metagenome 3300031151 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.R2 DOE Joint Genome Institute (JGI) 3300031151 Metagenome Analysis spades v. 3.12.0 Yes Yes icelab@berkeley.edu Steven Lindow No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 37.8864 -122.2981 244754331 379742 210 8 339 13 SRX5656244 Unrestricted 209.19 Metagenome 3300021164 *Microbiome Permanent Draft Freshwater planktonic and plastic biofilm microbial communities in Lake Erie, USA Freshwater microbial communities near Cleveland Ohio Easterly WWTP outflow, Lake Erie, USA - MD2014-0204-0206 University of Michigan 3300021164 Metagenome Analysis Megahit v1.1.1 released by JGI data releasing policy No Yes gumm@umich.edu Jordan Gumm No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.57 -81.59 159423830 184858 63 16 42 8 0.0 Metagenome 3300033481 *Microbiome Permanent Draft Wetland soil microbial communities from various locations Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_CT DOE Joint Genome Institute (JGI) 3300033481 Metagenome Analysis spades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified soil 41.3777 -82.5117 2762315491 6857085 1859 16 3229 30 SRX6412969 Unrestricted 19.63 Metagenome 3300042856 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379 NMDC pilot DOE Joint Genome Institute (JGI) 3300042856 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92048757 -106.94878552 503801180 1352766 561 42 1060 69 SRX5355418 0.0 Metagenome 3300011624 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00700 Weill Cornell Medical College 3300011624 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.84 -73.93 28636045 42458 20 0 16 0 SRX822667 0.0 Metagenome 3300028388 *Microbiome Permanent Draft Bras del Port September 2017 Non-marine hypersaline water viral communities from Bras del Port saltern ponds, Alicante, Spain - Termet September 2016 University of Alicante 3300028388 Metagenome Analysis IDBA v. 1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline water 38.1904 -0.5948 409553038 971845 41 0 57 0 0.0 Metagenome 2014642000 *Microbiome Permanent Draft Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) - 2_Upper_euphotic_70m DOE Joint Genome Institute (JGI) 2014642000 Metagenome Analysis No Yes delong@mit.edu Edward DeLong Yes 16439655 Environmental Aquatic Oceanic Marine Photic zone Marine 22.45 -158.0 10828386 16067 6 0 0 0 0.0 Metagenome 3300041726 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_489 MetaG AgResearch, New Zealand, Mosgeil 3300041726 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 2233433229 4784754 392 45 1425 71 0.0 Metagenome 3300027687 *Microbiome Permanent Draft Marine microbial communities from western Arctic Ocean Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027687 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh Yes 30271971 Environmental Aquatic Oceanic Marine Unclassified Marine 75.235 -150.0691 633613347 1172857 268 121 324 216 SRX2997310 Unrestricted 0.0 Metagenome 3300000932 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 P3 (2) DOE Joint Genome Institute (JGI) 3300000932 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 101197369 114204 16 0 21 0 SRX3311656 Unrestricted 0.0 Metagenome 3300027408 *Microbiome Permanent Draft Fumarolic subsurface microbial communities from Tramway Ridge at Mt. Erebus, Antarctica for carbon cycling studies in geothermal environments Geothermal fumarole subsurface microbial communities from Mt. Erebus, Antarctica - 1A2E (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027408 Metagenome Analysis spades v. 3.11.1 Yes Yes craig.herbold@microbial-ecology.net Craig Herbold No Environmental Terrestrial Fumaroles Volcanic Unclassified Fumarolic subsurface -77.5182 167.1113 5524172 14098 3 0 9 0 SRX2555438 Unrestricted 0.0 Metagenome 3300012357 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG DOE Joint Genome Institute (JGI) 3300012357 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.5673 -123.4758 2451936189 4845766 1406 59 2339 102 SRX3372898 Unrestricted 0.0 Metagenome 3300038505 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - Bijah Spring Stanford University 3300038505 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Thermal springs Unclassified Hot spring 44.761133 -110.7309 146756422 284954 151 1 192 0 SRX2887842, SRX2887843, SRX2887844, SRX2887845, SRX2887846, SRX2887847, SRX2887848, SRX2887849, SRX2887840, SRX2887841, SRX2887839, SRX2887853, SRX2887854, SRX2887855, SRX2887856, SRX2887857, SRX2887858, SRX2887859, SRX2887850, SRX2887851, SRX2887852, SRX2887864, SRX2887865, SRX2887866, SRX2887867, SRX2887868, SRX2887869, SRX2887826, SRX2887827, SRX2887860, SRX2887861, SRX2887862, SRX2887863, SRX2887831, SRX2887832, SRX2887876, SRX2887833, SRX2887834, SRX2887835, SRX2887836, SRX2887837, SRX2887838, SRX2887870, SRX2887871, SRX2887872, SRX2887873, SRX2887830, SRX2887874, SRX2887828, SRX2887829 0.0 Metagenome 3300048784 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 S-2-S DOE Joint Genome Institute (JGI) 3300048784 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3532 19.0475 450684885 707110 156 29 249 43 Restricted 10.74 Metagenome 3300028594 *Microbiome Permanent Draft Processed tobacco microbial communities from Sudan, Africa Processed tobacco microbial communities from Sudan, Africa Centers for Disease Control and Prevention (CDC), USA 3300028594 Metagenome Analysis SPADES Meta v. 3.10 released by JGI data releasing policy Yes Yes wyu3@cdc.gov Robert E. Tyx No Engineered Food production Unclassified Unclassified Unclassified Processed tobacco 15.6281 32.538 96735293 123963 87 4 108 7 0.0 Metagenome 3300030317 *Microbiome Permanent Draft Comammox microbial communities from various environments and locations in Europe Biofilm enrichment microbial communities from oil well in Aushiger, North Caucasus, Russia - ENR4_A Aalborg University 3300030317 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Terrestrial Oil well Deep subsurface Unclassified Biofilm enrichment 43.379167 43.723917 11517755 13478 4 0 5 0 0.0 Metagenome 3300030066 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from colorectal cancer patient in Houston, USA - MG100127 University of Michigan 3300030066 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 29.76 -95.37 26925070 48567 49 0 84 0 0.0 Metagenome 3300042296 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME12Jun2015-rr0428 DOE Joint Genome Institute (JGI) 3300042296 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 700231297 1074127 243 29 327 41 Unrestricted 25.03 Metagenome 3300039087 *Microbiome Draft Microbial communities from sediments and seawater samples from Gulf of Mexico Marine sediment microbial communities from Coatzacoalco region, Gulf of Mexico, Mexico - C14_station Ensenada Center for Scientific Research and Higher Education, Baja California 3300039087 Metagenome Analysis megahit v. 1.1.2 released by JGI data releasing policy Yes Yes metagenomics.group@gmail.com Asuncion Lago No Environmental Aquatic Sediment Marine Unclassified Marine Sediments 20.7404 -94.77106 151573547 359951 118 4 242 5 0.0 Metagenome 3300001605 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Tailings pond microbial communities from Northern Alberta - Syncrude Mildred Lake Settling Basin McGill University 3300001605 Metagenome Analysis released by AMY No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 57.01116 -111.6 8.69 1619957270 3740874 899 92 1498 134 0.0 Metagenome 3300006625 *Microbiome Permanent Draft Soil microbial communities from the Leymus chinensis steppe, China - nitrogen deposition Soil microbial communities from the Leymus chinensis steppe, China - after adding 10.5 g N m- 2, yr-1 Chengdu Institute of Biology, Chinese Academy of Sciences 3300006625 Metagenome Analysis velvet released per JGI data release policy No Yes ruijp@cib.ac.cn Junpeng Rui No Environmental Terrestrial Unclassified Soil Unclassified soil 43.63 116.7 244265593 1080117 427 28 830 109 0.0 Metagenome 3300011410 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT222_2 DOE Joint Genome Institute (JGI) 3300011410 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9779 -107.0028 222532866 543706 361 22 818 48 SRX3539333 Unrestricted 0.0 Metagenome 3300042540 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME26Sep2010-rd0137 DOE Joint Genome Institute (JGI) 3300042540 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 898113853 1331354 359 76 489 94 Unrestricted 17.02 Metagenome 3300008432 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 159247771 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008432 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 3628679 3749 4 0 6 0 0.0 Metagenome 3300039069 *Microbiome Permanent Draft Freshwater lake viral communities from Lake Michigan, near Chicago, USA Freshwater lake viral communities from Lake Michigan, near Chicago, USA- 95Street140624.1V Genewiz Inc., Loyola University 3300039069 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.7189 -87.5256 31043186 59627 35 0 39 0 0.0 Metagenome 3300027136 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepC_8h DOE Joint Genome Institute (JGI) 3300027136 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 129811179 245644 116 6 142 10 SRX5245220 Unrestricted 18.9 Metagenome 3300001419 *Microbiome Draft Saline water and sediment microbial community from Etoliko Lagoon, Greece Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline water (15 m) DOE Joint Genome Institute (JGI) 3300001419 Metagenome Analysis released based on JGI ITS Yes Yes sgtringe@lbl.gov, nckyrpides@lbl.gov Susannah Tringe, Nikos Kyrpides No Environmental Aquatic Saline Non-marine Saline and Alkaline Sediment Saline water and sediment 38.4825 21.315 451455632 963963 406 3 659 12 Unrestricted 0.0 Metagenome 3300027669 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027669 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 385216358 947139 373 35 676 68 SRX1985410, SRX2021669, SRX1985409 Unrestricted 0.0 Metagenome 7000000660 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765074482 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000660 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 7106222 18280 0 0 0 0 0.0 Metagenome 3300005712 *Microbiome Permanent Draft Soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, under manipulated climate change conditions. Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 DOE Joint Genome Institute (JGI) 3300005712 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jmtalbot@bu.edu, jmtalbot@bu.edu; ptempler@bu.edu Jennifer Talbot, Jennifer Bhatnagar; Pamela Templer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 2662930472 7958900 1529 170 2720 329 SRX2838816 Unrestricted 0.0 Metagenome 3300007120 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159369152 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007120 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 97394501 137033 86 0 119 0 0.0 Metagenome 2119805007 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - YNP_Beowulf Spring_D v1 DOE Joint Genome Institute (JGI) 2119805007 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 26913020 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.733 -110.709 2.85 60745063 128754 34 3 55 0 Unrestricted 0.0 Metagenome 3300012585 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100662 University of Pennsylvania 3300012585 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 13032563 33456 17 0 27 1 SRX756432 0.0 Metagenome 3300043339 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-450 Genome Quebec 3300043339 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 53.189089 -107.659168 1568708482 3538495 600 217 998 430 0.0 Metagenome 3300005278 *Microbiome Permanent Draft Hot Spring microbial communities from Great Boiling Spring, Nevada Hot spring sediment microbial communities from Great Boiling Spring, Nevada - cellulolytic enrichment CS 77C v3 (version 3) DOE Joint Genome Institute (JGI) 3300005278 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes brian.hedlund@unlv.edu Brian P. Hedlund, Brian Hedlund Yes 23555835, 23673639 Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot Spring 40.71458 -119.369659 6.37 138921631 254148 121 0 155 0 Unrestricted 0.0 Metagenome 3300002714 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4w-11 DOE Joint Genome Institute (JGI) 3300002714 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 342184 1157 35 3 54 1 SRX1991157 Unrestricted 0.0 Metagenome 3300039949 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Taiga, AK, USA - HEAL_046-O-20160726-COMP-DNA1 Battelle Memorial Institute 3300039949 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.87569 -149.21334 18933305 46489 35 1 63 1 0.0 Metagenome 3300011734 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01492 Weill Cornell Medical College 3300011734 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.63 -73.99 23196301 35814 15 1 18 2 SRX823371 0.0 Metagenome 7000000044 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159369152 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000044 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 165426751 310688 0 0 0 0 0.0 Metagenome 3300050466 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - W18W0 DOE Joint Genome Institute (JGI) 3300050466 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 86009786 165793 185 64 340 80 Unrestricted 19.99 Metagenome 3300036849 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_Dec_plot5_rep2 DOE Joint Genome Institute (JGI) 3300036849 Metagenome Analysis metaspades v. 3.13.0 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6541 -80.6298 1692652380 2918682 629 11 1117 22 SRX8186438 Unrestricted 14.43 Metagenome 3300025246 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025246 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Unclassified Roots Unclassified Arabidopsis root 35.9082 -79.0499 141835660 207456 75 0 97 0 SRX1991094 Unrestricted 0.0 Metagenome 3300003371 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM DOE Joint Genome Institute (JGI) 3300003371 Metagenome Analysis revert back to private per Christa Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 122594334 354530 461 27 807 51 SRX2575152 Unrestricted 0.0 Metagenome 3300049732 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P26SSC2_190918_c DOE Joint Genome Institute (JGI) 3300049732 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 1007496207 1523449 339 0 475 0 SRX20650059 Unrestricted 0.0 Metagenome 3300020174 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041409US metaG (spades assembly) DOE Joint Genome Institute (JGI) 3300020174 Metagenome Analysis spades v. 3.10.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 799064157 1539888 377 31 561 42 SRX3920929 Unrestricted 30.82 Metagenome 3300012439 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100622 University of Pennsylvania 3300012439 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 6610925 18816 13 0 29 0 SRX756472 0.0 Metagenome 3300027801 *Microbiome Permanent Draft Marine microbial communities from western Arctic Ocean Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027801 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh Yes 30271971 Environmental Aquatic Oceanic Marine Unclassified Marine 77.0991 -150.2252 1022130283 1995125 331 175 520 263 SRX2997514 Unrestricted 0.0 Metagenome 3300010038 *Microbiome Permanent Draft Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106 DOE Joint Genome Institute (JGI) 3300010038 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes klgravuer@ucdavis.edu Kelly Gravuer No Environmental Terrestrial Grasslands Soil Unclassified Serpentine soil 38.8724 -122.4268 1838375872 4117624 1683 51 3071 66 SRX2525427 Unrestricted 0.0 Metagenome 3300070449 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_041-M-20160729-COMP-DNA1 3300070449 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 3860027 12690 36 0 64 0 0.0 Metagenome 3300023022 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C1 DOE Joint Genome Institute (JGI) 3300023022 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Elk feces 38.04 -122.5 56102772 136077 287 1 571 3 SRX4415372 Unrestricted 8.09 Metagenome 3300070571 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Treehaven, Wisconsin, USA - TREE_004-O-20170707-COMP-DNA1 Battelle Memorial Institute 3300070571 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 45.479917 -89.556089 5.38-6 240611720 723082 539 14 1059 26 0.0 Metagenome 3300047998 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_140702.NP1 DOE Joint Genome Institute (JGI) 3300047998 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 714821153 1531229 460 71 667 123 Unrestricted 15.77 Metagenome 3300022426 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1BM2 JM92 AGRF 3300022426 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 59235800 96666 40 1 50 1 0.0 Metagenome 3300039191 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Rauer Lake 5, Antarctica - Torckler 5, #76 Australian Centre for Ecogenomics 3300039191 Metagenome Analysis Spades v. 3.12.0 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.889667 77.804 457281149 778301 241 15 411 28 0.0 Metagenome 3300002430 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP01-I1 3300002430 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300047481 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Jordan River, Golan Heights, Israel - jordanrivershai5_2019_sw_WHONDRS-S19S_0058 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047481 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 32.8993 35.6136 448869928 670037 249 34 387 41 Unrestricted 0.0 Metagenome 3300048542 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - Jacob496 DOE Joint Genome Institute (JGI) 3300048542 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Sand Soil Desert sand -78.0935 163.7542 126101315 306375 162 2 295 1 Unrestricted 0.0 Metagenome 3300044477 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - MER3-9-12-19 DOE Joint Genome Institute (JGI) 3300044477 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.4186 -120.5761 728229136 1446040 716 31 1134 54 Restricted 9.43 Metagenome 3300026532 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_12_40cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026532 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 719022412 1209890 408 9 653 7 SRX2728411 Unrestricted 0.0 Metagenome 3300001973 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Bermuda, Atlantic Ocean - GS001 J. Craig Venter Institute (JCVI) 3300001973 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Oceanic Marine Unclassified Marine 32.166668 -64.5 244454478 459878 146 32 216 52 0.0 Metagenome 3300037628 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Sediment microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR13_sedM1 DOE Joint Genome Institute (JGI) 3300037628 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Sediment sediment 47.7538 -127.7637 2019973409 5388216 1851 7 3621 8 SRX9096510 Unrestricted 13.14 Metagenome 3300009484 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 12m depth; DNA IDBA-UD Marine Biological Laboratory 3300009484 Metagenome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes jhuber@mbl.edu, jhuber@mbl.edu; jhuber@whoi.edu Huber, Huber; Julie Huber No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 7.7 380484404 863154 332 3 513 10 0.0 Metagenome 3300043738 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - FA_A50 DOE Joint Genome Institute (JGI) 3300043738 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.1334 -62.8883 841035513 2228514 345 3 675 11 Unrestricted 8.73 Metagenome 3300055139 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_27-s27 day 154 DOE Joint Genome Institute (JGI) 3300055139 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1289698754 1892798 195 132 279 143 Unrestricted 40.67 Metagenome 3300005552 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_09_40cm DOE Joint Genome Institute (JGI) 3300005552 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2177174110 6252454 2290 57 3700 120 SRX2728090 Unrestricted 0.0 Metagenome 3300045780 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - G2-R3-B DOE Joint Genome Institute (JGI) 3300045780 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3569 19.0504 350371608 712041 229 20 353 39 Unrestricted 7.76 Metagenome 3300025590 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_100420 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025590 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de; raperrier@lbl.gov; agrieb@mpi-bremen.de Hanno Teeling; Rene A. Perrier; Anissa Grieb Yes 27054497, 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 325377294 614808 251 60 351 87 SRX2999537 Unrestricted 0.0 Metagenome 3300043457 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-403 Genome Quebec 3300043457 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 53.544071 -114.581865 1036135758 2383617 429 68 745 111 0.0 Metagenome 3300031952 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40 DOE Joint Genome Institute (JGI) 3300031952 Metagenome Analysis spades v. 3.12.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5395 -110.3891 3002831794 6099629 1702 24 2674 24 SRX6380996 Unrestricted 15.14 Metagenome 3300002554 *Microbiome Permanent Draft Mangrove soil microbial communities from Bertioga, Brazil, sampling enzymes DNAtotal_contig02_Mgv02 3300002554 Metagenome Analysis CLC Genomics Workbench released by JGI data releasing policy No Yes dfdomingos@uol.com.br Daniela Domingos, Daniela F. Domingos No Environmental Aquatic Oceanic Marine Oil-contaminated sediment Mangrove soil 6376 6 0 0 0 0 0.0 Metagenome 3300029028 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 350_12M Beijing Genomics Institute (BGI) 3300029028 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 93506945 101134 54 0 83 0 ERX491103 0.0 Metagenome 3300008405 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from the National Institute of Health, USA - subject 159490532, visit 2 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008405 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 120063034 216743 116 0 186 0 0.0 Metagenome 3300017631 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - L211-101 University of Michigan 3300017631 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.68079 -84.4871 21327712 24608 9 0 10 0 0.0 Metagenome 3300069540 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Taiga, AK, USA - HEAL_046-O-20160726-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069540 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.87569 -149.21334 45737999 122465 76 6 136 5 0.0 Metagenome 3300047392 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from San Joaquin River, California, USA - NASQAN2015_052 DOE Joint Genome Institute (JGI) 3300047392 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 37.676 -121.2663 568237006 1147022 408 96 713 185 Unrestricted 19.33 Metagenome 3300044800 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Soil microbial communities from peatland in Alberta, Canada - SB-U-VEG 70-80 cm DOE Joint Genome Institute (JGI) 3300044800 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4621 -114.8803 610549558 823260 208 0 304 0 Unrestricted 23.52 Metagenome 3300060299 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.20W.13 SIP fraction DOE Joint Genome Institute (JGI) 3300060299 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 410369404 756868 206 124 344 179 Unrestricted 0.0 Metagenome 3300045556 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Cordillera ecozone, Canada - Lake 13-522 Genome Quebec 3300045556 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 59.761821 -133.773316 1113155954 2435968 622 154 961 273 0.0 Metagenome 3300000739 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 22MAY2008 hypolimnion DOE Joint Genome Institute (JGI) 3300000739 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300002057 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Galicia, Spain - SA1-P2 J. Craig Venter Institute (JCVI) 3300002057 Metagenome Analysis Released per Alexandra J. Roth Schulze (April 1, 2016) No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface 42.52 -8.82 173710691 673795 48 15 134 27 0.0 Metagenome 3300040007 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_059-O-20170718-COMP-DNA1 Battelle Memorial Institute 3300040007 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 16384034 40430 39 6 71 9 0.0 Metagenome 3300042689 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A64 University of California, Davis 3300042689 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 257961303 699407 322 9 593 16 0.0 Metagenome 3300034284 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075 DOE Joint Genome Institute (JGI) 3300034284 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1696257664 3463869 662 144 1009 212 SRX7622045 Unrestricted 16.24 Metagenome 3300033748 *Microbiome Permanent Draft Marine Fish Microbial Metagenomes Atlantic cod gut microbial communities from S?r?ya, Atlantic Ocean - S_07 Centre for Ecological and Evolutionary Synthesis (CEES), University of Oslo 3300033748 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton No Host-associated Fish Intestine Digestive system Unclassified fish gut 70.753712 22.061373 192953040 243820 22 4 18 16 0.0 Metagenome 3300020198 *Microbiome Permanent Draft Freshwater microbial communities from Lake Tanganyika, Tanzania Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015019 Mahale Deep Cast 65m DOE Joint Genome Institute (JGI) 3300020198 Metagenome Analysis spades v. 3.10.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater lake -6.1786 29.658 1343491548 2322484 701 32 1005 48 SRX4818181 Unrestricted 28.53 Metagenome 3300021170 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M DOE Joint Genome Institute (JGI) 3300021170 Metagenome Analysis spades v. 3.10.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 2973328301 6409333 866 78 1562 110 SRX4026207 Unrestricted 13.61 Metagenome 3300025777 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH13Jun08 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025777 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 84513549 198452 82 33 145 68 SRX2565407 Unrestricted 0.0 Metagenome 3300006478 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0125m University of Hawaii 3300006478 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 292072796 734945 601 61 862 103 0.0 Metagenome 3300046520 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere DOE Joint Genome Institute (JGI) 3300046520 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5877 -123.1934 476262719 732421 217 36 331 50 Unrestricted 27.32 Metagenome 3300013156 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100451 University of Pennsylvania 3300013156 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 18015408 39978 13 0 24 0 SRX756547 0.0 Metagenome 3300011486 *Microbiome Permanent Draft Host-associated microbial communities of cyanobacteria P. hollandica from lake water in Netherlands Cyanobacterial microbial communities from lake water in Netherlands - Pholl SPSU St. Petersburg State University 3300011486 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Microbial Unclassified Bacteria Unclassified Cyanobacteria Prochlorothrix hollandica 52.13 -5.04 24665196 27590 7 1 15 2 SRX763521 0.0 Metagenome 3300066286 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONZ_045-M-20170712-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066286 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.10077 -96.56309 83160741 245280 162 13 351 19 0.0 Metagenome 2077657009 *Microbiome Permanent Draft Bovine rumen viral communities from University of Illinois Dairy Farm in Urbana, IL Bovine rumen viral communities from University of Illinois Dairy Farm in Urbana, IL, Cow rumen 6993 DOE Joint Genome Institute (JGI) 2077657009 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes bwhite44@illinois.edu Bryan White Yes 22004549 Host-associated Mammals Stomach Digestive system Rumen Bovine rumen 40.0886 -88.2202 100678798 304340 0 0 0 0 Unrestricted 0.0 Metagenome 3300034819 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1 DOE Joint Genome Institute (JGI) 3300034819 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 39.6589 -79.9058 576153670 1626285 662 61 1201 93 SRX8289781 Unrestricted 6.24 Metagenome 3300042667 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A47 University of California, Davis 3300042667 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 292676267 839856 401 14 783 25 0.0 Metagenome 3300038532 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - TUL1 Michigan State University 3300038532 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 26.653333 -121.296667 30887342 86727 0 0 3 0 0.0 Metagenome 3300043030 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B6.2_Sample6.Rodeo2.Well1132 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043030 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 128621864 235146 143 0 266 0 SRX8356078 Unrestricted 62.58 Metagenome 3300042955 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-437 Genome Quebec 3300042955 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 52.489052 -107.407077 1061238864 2505655 285 46 420 79 0.0 Metagenome 3300014622 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01382 Weill Cornell Medical College 3300014622 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.63 -74.01 17022747 19740 9 0 14 0 SRX823322 0.0 Metagenome 3300031358 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-110 DOE Joint Genome Institute (JGI) 3300031358 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.759 -70.891 417746178 773341 348 2 549 7 SRX5358501 Unrestricted 14.07 Metagenome 3300000905 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 42 DOE Joint Genome Institute (JGI) 3300000905 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 17704443 53341 54 0 80 0 SRX1985053 Unrestricted 0.0 Metagenome 3300008619 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159369152 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008619 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 61235788 70901 49 0 58 0 0.0 Metagenome 3300022868 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1402 DOE Joint Genome Institute (JGI) 3300022868 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 195190896 419119 174 0 269 0 SRX4397506 Unrestricted 14.01 Metagenome 3300013707 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100623 University of Pennsylvania 3300013707 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12115993 30507 19 0 30 0 SRX756471 0.0 Metagenome 3300069296 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_004-M-20210622-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069296 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 45.822941 -121.998707 3074038485 7283581 1265 235 2277 395 0.0 Metagenome 3300009971 *Microbiome Permanent Draft Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_174 metaG DOE Joint Genome Institute (JGI) 3300009971 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes esinger@lbl.gov; twoyke@lbl.gov Esther Singer; Tanja Woyke No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass associated 30.387 -97.7301 3585516 6735 10 43 23 53 SRX2524159 Unrestricted 0.0 Metagenome 3300000225 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 120m DOE Joint Genome Institute (JGI) 3300000225 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 213006160 457571 157 5 310 12 Unrestricted 0.0 Metagenome 3300029720 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35989 Beijing Genomics Institute (BGI) 3300029720 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 279676652 373923 248 0 336 0 0.0 Metagenome 3300039742 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA FertPrarie soil microbial communities from Boone County, Iowa, USA - PF41-LM-July2012 Iowa State University 3300039742 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land FertPrarie soil 42.01375 -93.783837 40615865 117566 96 5 216 6 0.0 Metagenome 3300039360 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 201_4M Beijing Genomics Institute (BGI) 3300039360 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 32414061 41011 16 0 29 0 ERX490996 0.0 Metagenome 3300030021 *Microbiome Permanent Draft Marine Fish Microbial Metagenomes Coastal fish gut microbial communities from Southern California Bight, Pacific Ocean - EJ1A University of California, San Diego, Scripps Institute of Oceanography 3300030021 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton No Host-associated Fish Intestine Digestive system Unclassified fish gut 32.77924444 -117.2280806 5736978 6592 9 0 7 0 0.0 Metagenome 7000000547 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 764062976 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000547 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 1975939 2009 0 0 0 0 0.0 Metagenome 3300031519 *Microbiome Permanent Draft Extreme environments viral communities from various locations Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2 DOE Joint Genome Institute (JGI) 3300031519 Metagenome Analysis spades v. 3.12.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Coastal Marine Unclassified sackhole brine 71.3731 -156.5049 1741436604 3846423 550 97 886 179 SRX5650220 Unrestricted 49.23 Metagenome 3300031646 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - CB9_33.1 DOE Joint Genome Institute (JGI) 3300031646 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified Marine 77.9995 -150.0065 1005319087 2033564 915 119 1312 200 SRX5797854 Unrestricted 14.78 Metagenome 2081372009 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Singapore and Univ of Illinois at Urbana, that are terephthalate-degrading Wastewater bioreactor microbial communities from Singapore -Terephthalate degrading community (Mother reactor DNA_dereplicate_75bp) DOE Joint Genome Institute (JGI) 2081372009 Metagenome Analysis Newbler released per Simon -- IMGSUPP2949 No Yes sgtringe@lbl.gov Susannah Tringe Yes 20686509 Engineered Bioremediation Wastewater Terephthalate Activated sludge Wastewater bioreactor 1.332 103.756 56395451 165935 0 0 0 0 0.0 Metagenome 3300020353 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000686 (ERX556093-ERR598998) CEA Genoscope 3300020353 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -8.896 -140.2861 374047645 965503 365 13 683 31 0.0 Metagenome 3300046839 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TS24 (downsampled for mapping) DOE Joint Genome Institute (JGI) 3300046839 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.4139 53259408 52434 71 2 73 3 SRX12729156, SRX12729155, SRX12729154 Unrestricted 0.0 Metagenome 3300001632 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001 DOE Joint Genome Institute (JGI) 3300001632 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 33980765 107105 14 2 30 10 SRX2014326 Unrestricted 0.0 Metagenome 3300045088 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal system in Merced County, California, USA - WIN5-9-19-19 DOE Joint Genome Institute (JGI) 3300045088 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.4216 -120.6127 209562907 554047 321 68 548 126 Restricted 7.41 Metagenome 3300005919 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKM DOE Joint Genome Institute (JGI) 3300005919 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli, Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline Lake -68.4725 78.188 779524746 1977900 741 3 1395 6 SRX2746861 Unrestricted 0.0 Metagenome 3300012612 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100675 University of Pennsylvania 3300012612 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 18585164 43400 23 0 37 2 SRX756419 0.0 Metagenome 3300026505 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 59D DOE Joint Genome Institute (JGI) 3300026505 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 304088433 673258 218 16 327 31 SRX4466258 Unrestricted 20.68 Metagenome 3300036594 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - 2AD 52 I DOE Joint Genome Institute (JGI) 3300036594 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 238341310 406993 349 3 528 3 SRX8357243 Unrestricted 47.69 Metagenome 3300027923 *Microbiome Permanent Draft Wastewater bacterial communities from water purifying plant in Alicante, Spain Wastewater bacterial communities from water purifying plant in Alicante, Spain - Replicate Ab3 Polytechnic University of Valencia 3300027923 Metagenome Analysis metaSPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 38.43 -0.42 180872159 334025 118 6 179 6 0.0 Metagenome 3300015614 *Microbiome Finished Hot spring water microbial communities from Unnai hot spring, Gujarat, India Hot spring water microbial communities from Unnai hot spring, Gujarat, India Anand Agricultural University 3300015614 Metagenome Analysis MetaVelvet - v1.2.01 released by JGI data releasing policy No Yes avmang@gmail.com Amitsinh Mangrola No Environmental Aquatic Hot (42-90C) Thermal springs Alkaline Hot spring water 20.853333 73.334444 7.2 105679989 440039 2167 0 3892 1 0.0 Metagenome 3300071008 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_007-M-20160726-COMP-DNA1 3300071008 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 314236764 799540 226 18 449 22 0.0 Metagenome 3300006871 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 DOE Joint Genome Institute (JGI) 3300006871 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Host-associated Plants Rhizosphere Roots Soil Populus rhizosphere 35.8444 -83.9599 5747972596 15768804 3269 108 5632 197 SRX2923911 Unrestricted 0.0 Metagenome 3300046083 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_43 DOE Joint Genome Institute (JGI) 3300046083 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9802 -106.9905 12747477 38433 86 28 155 44 Unrestricted 0.0 Metagenome 3300060914 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Guanica State Forest and Biosphere Reserve, Puerto Rico - GUAN_043-M-20210921-comp-1 DOE Joint Genome Institute (JGI) 3300060914 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tropical forest Soil Unclassified Terrestrial soil 17.968869 -66.867682 1593796329 2617791 443 6 761 10 Unrestricted 17.11 Metagenome 3300027203 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1371A-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027203 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2342 -123.9167 34243288 83375 94 39 173 67 SRX2753608 Unrestricted 47.36 Metagenome 3300014051 *Microbiome Permanent Draft Wastewater microbial communities from lab-scale CANDO bioreactor activated sludge, Evanston, Illinois, US Wastewater microbial communities from lab-scale CANDO bioreactor activated sludge, Evanston, Illinois, US - Aug_07_2015 Beijing Genomics Institute (BGI) 3300014051 Metagenome Analysis CLC Bio 6.0.2 released by JGI data releasing policy Yes Yes hangao2017@u.northwestern.edu Han Gao No Engineered Bioreactor Unclassified Aerobic Unclassified synthetic wastewater 42.057879 -87.67651 535776784 822315 68 4 141 12 0.0 Metagenome 3300070704 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_024-M-20180716-COMP-DNA1 3300070704 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 50474292 149216 96 7 167 12 0.0 Metagenome 3300000673 *Microbiome Permanent Draft Abyssal marine microbial communities from the Mediterranean Sea Abyssal marine microbial communities from the Mediterranean Sea - thetis-brine Fidelity Systems Inc 3300000673 Metagenome Analysis released per JGI data release policy No Yes francesco.smedile@iamc.cnr.it, francesco.smedile14@gmail.com francesco smedile, Francesco Smedile No Environmental Aquatic Oceanic Marine Abyssal plane Abyssal marine 34.6698 22.1455 0 0 0 0 0 0 0.0 Metagenome 3300028578 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT160D0 (version 2) DOE Joint Genome Institute (JGI) 3300028578 Metagenome Analysis spades v. 3.11.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9888 -108.3994 874249811 2423083 793 29 1535 49 SRX5086851, SRX5086852 Unrestricted 0.0 Metagenome 3300014763 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Aquatic prokaryotic and eukaryotic communities from a canal in New York, USA: aquatic canal water -GCSS-11 Weill Cornell Medical College 3300014763 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Unclassified Canal Unclassified Aquatic canal 40.67 -73.99 50858465 152810 116 2 252 12 SRX823485 0.0 Metagenome 3300037475 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - HN_050217 DOE Joint Genome Institute (JGI) 3300037475 Metagenome Analysis metaspades v. 3.13.0 Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.9002 -89.3556 933954480 2180767 755 81 1273 115 SRX9381674 Unrestricted 7.39 Metagenome 3300027344 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F07 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027344 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 43509639 51630 50 0 53 0 SRX3195099 Unrestricted 0.0 Metagenome 3300048436 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_111019.NP2 DOE Joint Genome Institute (JGI) 3300048436 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 584298316 1252956 401 35 589 76 Unrestricted 15.73 Metagenome 3300018914 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - early stage, 42 hrs after wetting v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018914 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 311456324 567476 354 10 546 17 0.0 Metagenome 3300025001 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025001 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 153006906 363960 244 2 417 5 SRX1983744 Unrestricted 0.0 Metagenome 3300026446 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-B DOE Joint Genome Institute (JGI) 3300026446 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 124816743 328241 167 12 314 27 SRX4803892 Unrestricted 9.98 Metagenome 3300005294 *Microbiome Draft Switchgrass rhizosphere microbial communities from Michigan, USA Bulk soil microbial communities from switchgrass field near Rose Lake, East Lansing, Michigan, USA - RL2 Bulk Soil v2 (version 2) DOE Joint Genome Institute (JGI) 3300005294 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes tiedjej@msu.edu James Tiedje No Environmental Terrestrial Agricultural land Soil Bulk soil Bulk soil 42.794771 -84.393804 2599904402 6730342 2530 13 4572 41 Unrestricted 0.0 Metagenome 3300005473 *Microbiome Draft Switchgrass rhizosphere microbial communities from Michigan, USA Switchgrass rhizosphere microbial communities from Buena Vista Grasslands Wildlife Area, Michigan, USA - BV2.1 v2 (version 2) DOE Joint Genome Institute (JGI) 3300005473 Metagenome Analysis Newbler and/or Velvet released based on JGI ITS Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 44.168815 -89.633871 2824591 5407 4 0 8 0 Unrestricted 0.0 Metagenome 3300002292 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP21-I3 3300002292 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300049705 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought DOE Joint Genome Institute (JGI) 3300049705 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 573487119 1268760 654 38 1205 47 Unrestricted 13.98 Metagenome 3300039584 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_048-O-20170621-COMP-DNA1 Battelle Memorial Institute 3300039584 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 95542669 196959 68 28 122 41 0.0 Metagenome 3300048108 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_110518.NP1 DOE Joint Genome Institute (JGI) 3300048108 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 438800434 890934 344 40 463 67 Unrestricted 10.67 Metagenome 2042536002 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM173 Beijing Genomics Institute (BGI), Macrogen 2042536002 Metagenome Analysis released per JGI data release policy No Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 64588181 138785 56 0 100 0 0.0 Metagenome 3300031759 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P DOE Joint Genome Institute (JGI) 3300031759 Metagenome Analysis spades v. 3.12.0 Yes Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.0411 -89.6861 748649029 1461324 443 61 627 97 SRX7891183 Unrestricted 20.35 Metagenome 3300035452 *Microbiome Permanent Draft Microbial communities from sediments and seawater samples from Gulf of Mexico Marine sediment microbial communities from Perdido region, Gulf of Mexico, Mexico - B7_station Ensenada Center for Scientific Research and Higher Education, Baja California 3300035452 Metagenome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy Yes Yes metagenomics.group@gmail.com Asuncion Lago No Environmental Aquatic Sediment Marine Unclassified Marine sediment 25.6528081 -95.5731 105029601 277183 132 8 281 24 0.0 Metagenome 3300032829 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3 DOE Joint Genome Institute (JGI) 3300032829 Metagenome Analysis spades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified soil 26.5008 -80.2398 3852611170 8094700 1956 98 3355 158 SRX5666028 Unrestricted 7.99 Metagenome 3300040771 *Microbiome Permanent Draft Cryoconite microbiome from cyroconite holes in Resolute Bay, NU, Canada Cryoconite microbial community from Resolute Bay, Canada - FullCryo HiSeq reassembly McGill University 3300040771 Metagenome Analysis hybridSPADES v. 3.13.0 released by Catherine Maggiori No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Aquatic Sea ice Marine Cryoconite Cryoconite 74.44707 -95.0348 261582792 380803 54 46 105 55 0.0 Metagenome 3300022461 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1OPP1 JM79 AGRF 3300022461 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 68674465 106772 40 0 43 0 0.0 Metagenome 3300023718 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_156A University of California, Irvine 3300023718 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 99266429 97028 17 0 14 0 0.0 Metagenome 3300001846 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM22, ROCA_DNA119_0.2um_25b 3300001846 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River plume Marine Plankton Marine plankton 11.3123 -56.4267 138870629 296607 52 17 114 29 0.0 Metagenome 7000000472 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 861967750 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000472 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 95577291 193439 0 0 0 0 0.0 Metagenome 3300035331 *Microbiome Permanent Draft Cathode biofilm microbial communities from solar microbial fuel cell (MFC) in Washington, DC, USA Cathode biofilm microbial communities from solar microbial fuel cell (MFC) in Washington, DC, USA - Sample 3 Naval Research Laboratory 3300035331 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Industrial production Unclassified Engineered product Unclassified Cathode biofilm 38.823126 -77.017947 70600137 90644 25 0 33 0 0.0 Metagenome 3300027177 *Microbiome Permanent Draft Rhizosphere and bulk soil microbial communities from Harvard Forest, USA Bulk soil microbial communities from Harvard Forest, USA - 5Bulk_unsorted metaG (SPAdes) DOE Joint Genome Institute (JGI) 3300027177 Metagenome Analysis spades v. 3.11.1 Yes Yes deangelis@microbio.umass.edu Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Bulk soil bulk soil 42.5502 -72.1737 4387156 14295 10 2 19 0 SRX2718138 Unrestricted 0.0 Metagenome 2140918013 *Microbiome Permanent Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies) DOE Joint Genome Institute (JGI) 2140918013 Metagenome Analysis MSU Partitioned and Velver Released on PI's approval No Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Grasslands Soil 41.827222 -93.008611 219886501 384344 1 0 3 0 0.0 Metagenome 3300048800 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-P1(3) 40-44 DOE Joint Genome Institute (JGI) 3300048800 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.355 19.0437 589874998 857160 184 1 320 0 Restricted 18.64 Metagenome 3300031832 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25 DOE Joint Genome Institute (JGI) 3300031832 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 798103542 1895958 217 0 331 2 SRX5817379 Unrestricted 12.25 Metagenome 3300028480 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung G16 DOE Joint Genome Institute (JGI) 3300028480 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Elk feces 38.04 -122.5 174676605 371819 337 25 589 42 SRX5092971, SRX5092972 Unrestricted 0.0 Metagenome 3300037521 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_3500m_C2_0cm2cm DOE Joint Genome Institute (JGI) 3300037521 Metagenome Analysis metaspades v. 3.13.0 Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.6077 -122.6196 1530985799 2500203 506 17 847 28 SRX9141344 Unrestricted 15.41 Metagenome 3300014299 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D1 DOE Joint Genome Institute (JGI) 3300014299 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.04565 -121.866287 251097971 645277 334 2 658 5 SRX7180841 Unrestricted 0.0 Metagenome 3300046512 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere DOE Joint Genome Institute (JGI) 3300046512 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5877 -123.1936 599326230 871531 194 37 280 48 Unrestricted 24.41 Metagenome 3300032796 *Microbiome Permanent Draft Lake microbial communities from Canada Sediment microbial communities from the Atlantic Highlands, Canada - top sediment 17-054 Genome Quebec 3300032796 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Sediment 47.694086 -67.642841 478139099 1186505 572 7 1130 4 0.0 Metagenome 3300023272 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L171-409R-4 DOE Joint Genome Institute (JGI) 3300023272 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 501316167 1069638 522 116 822 196 SRX4799560 Unrestricted 9.8 Metagenome 3300013823 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01059 Weill Cornell Medical College 3300013823 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.68 -73.97 16992006 29620 15 0 29 0 SRX823021 0.0 Metagenome 3300038819 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog19 BILS 3300038819 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 10449618 26365 15 2 27 2 ERX1594841 0.0 Metagenome 3300024252 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_135_MG DOE Joint Genome Institute (JGI) 3300024252 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca; shallam@interchange.ubc.ca Sean Crowe; Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5847 -123.5008 553529159 1012527 360 6 533 21 SRX4482641 Unrestricted 52.13 Metagenome 3300006023 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Synthetic microbial communities from Ohio, USA - SynthPrep_1_END_DS7_MetaG DOE Joint Genome Institute (JGI) 3300006023 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes reginalamendella@gmail.com Regina Lamendella No Engineered Bioreactor Activated sludge Aerobic Unclassified Synthetic lake water 40.0 -83.0145 179180131 486545 304 2 512 9 SRX2839586 Unrestricted 0.0 Metagenome 3300012204 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG DOE Joint Genome Institute (JGI) 3300012204 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.5673 -123.4758 2248500445 4137046 1321 23 2250 37 SRX3372738 Unrestricted 0.0 Metagenome 3300021549 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge C. singaporensis associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - co35is 200bp no Eukaryotes last University of New South Wales 3300021549 Metagenome Analysis IDBA-UD released by Emmanuelle BOTTE Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Coelocarteria singaporensis -9.8241 150.825833 69063236 145777 43 4 80 5 0.0 Metagenome 3300001003 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -Nitrogen NN342 DOE Joint Genome Institute (JGI) 3300001003 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 62871 193 6 1 20 2 SRX3311792 Unrestricted 0.0 Metagenome 3300029712 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37316 Beijing Genomics Institute (BGI) 3300029712 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 237173890 292312 172 1 244 2 0.0 Metagenome 3300015202 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic sediment microbial communities from supraglacial cryoconite, Storglaciaren, Tarfala, Sweden (Sample st-12a, ablation zone cryoconite) University of Bristol 3300015202 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.901457 18.580979 5.3 356555055 584868 147 26 188 39 0.0 Metagenome 3300001795 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_8Bad DOE Joint Genome Institute (JGI) 3300001795 Metagenome Analysis Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 77538149 150733 85 0 131 2 SRX3322484 Unrestricted 0.0 Metagenome 3300012343 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100661 University of Pennsylvania 3300012343 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 34502425 73663 28 0 40 0 SRX756433 0.0 Metagenome 3300021471 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-2-3_MG DOE Joint Genome Institute (JGI) 3300021471 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.0114 -110.5956 591576850 1186311 632 3 1027 4 SRX3982321 Unrestricted 12.69 Metagenome 3300070333 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_001-M-20170721-COMP-DNA1 3300070333 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 122884306 346280 150 8 297 19 0.0 Metagenome 3300047507 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2015 IH-HC-9_6cm DOE Joint Genome Institute (JGI) 3300047507 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.3581 19.0481 54246212 96621 43 0 94 0 Restricted 76.61 Metagenome 3300012924 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300012924 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 2630281081 5873501 1618 323 2887 561 SRX3049020, SRX3049012, SRX3049013, SRX3049014, SRX3049015, SRX3049016, SRX3049017, SRX3049018, SRX3049019 Unrestricted 0.0 Metagenome 3300013266 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100420 University of Pennsylvania 3300013266 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 26207934 51321 20 1 27 1 SRX756578 0.0 Metagenome 3300070678 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_002-M-20190828-COMP-DNA1 3300070678 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 12190361 39149 56 1 94 4 0.0 Metagenome 3300014610 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00487 Weill Cornell Medical College 3300014610 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.82 -73.89 28673619 42650 20 0 31 0 SRX822456 0.0 Metagenome 3300028162 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_55m DOE Joint Genome Institute (JGI) 3300028162 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 340540742 668399 463 1 709 4 SRX5244741 Unrestricted 16.69 Metagenome 3300024181 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK34 DOE Joint Genome Institute (JGI) 3300024181 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 174285432 462567 294 27 481 48 SRX4547588 Unrestricted 8.04 Metagenome 3300002629 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A2a-12 DOE Joint Genome Institute (JGI) 3300002629 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 400531 1365 28 3 52 2 SRX1991197 Unrestricted 0.0 Metagenome 3300020684 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 07JUN2007 hypolimnion DOE Joint Genome Institute (JGI) 3300020684 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 49921885 104092 59 4 110 12 Unrestricted 0.0 Metagenome 3300037314 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site2_nosalt_MVII_0 DOE Joint Genome Institute (JGI) 3300037314 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Salt marsh microbial mat 20.7452 58.6625 441440179 908160 337 9 580 14 SRX9169871 Unrestricted 11.2 Metagenome 3300046752 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_141217.NP1 DOE Joint Genome Institute (JGI) 3300046752 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 749296271 1590317 548 73 907 96 Unrestricted 10.3 Metagenome 3300014914 *Microbiome Permanent Draft Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay2, Core 4569-9, 9-12 cm DOE Joint Genome Institute (JGI) 3300014914 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nd.microbiota@gmail.com Nina Dombrowski Yes 30479325 Environmental Aquatic Hydrothermal vents Marine Sediment marine sediment 27.0151 -111.3798 1531843996 3494594 1375 27 2408 28 SRX3568614 Unrestricted 15.89 Metagenome 3300039232 *Microbiome Permanent Draft Marine microbial communities from Northern Baffin Bay, Arctic Ocean Marine microbial communities from Northern Baffin Bay, Arctic Ocean - scm_st101_2018 CEA Genoscope 3300039232 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy Yes Yes nastasia.freyria.1@ulaval.ca Nastasia Freyria No Environmental Aquatic Oceanic Marine Photic zone marine 76.62 -77.58 4122179207 11605195 2255 1684 3394 1711 0.0 Metagenome 3300012620 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100118 University of Pennsylvania 3300012620 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 21154567 48992 17 0 20 1 SRX756712 0.0 Metagenome 3300024578 *Microbiome Permanent Draft Cephalochordate Microbial Metagenomes Coastal seawater microbial communities from Tampa Bay, Florida, USA - NH009 University of California, San Diego, Scripps Institute of Oceanography 3300024578 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton No Environmental Aquatic Coastal Marine Unclassified coastal seawater 27.847583 -82.552861 14807747 20928 11 4 18 7 0.0 Metagenome 3300056788 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Activated sludge microbial communities from bioreactor in WWTP, Madison, WI, USA - RS_2021-08-26_SampleA (version 2) DOE Joint Genome Institute (JGI) 3300056788 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.03331 -89.35633 1185512815 1214395 385 35 396 42 Unrestricted 10.55 Metagenome 3300043443 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Blue River, Connerville, Oklahoma, USA - blueriver_2019_sw_WHONDRS-S19S_0024 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043443 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 34.4425 -96.6225 582142717 957316 274 22 397 44 Unrestricted 36.06 Metagenome 3300018051 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1 DOE Joint Genome Institute (JGI) 3300018051 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 .05 565341143 1337411 762 32 1582 57 SRX3939403 Unrestricted 5.41 Metagenome 3300028825 *Microbiome Permanent Draft Axial Seamount Reassemblies Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS914_Anemone_DNA IDBA_UD reassembly Marine Biological Laboratory 3300028825 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes cfortunato@gmail.com; randerson@carleton.edu; elks@mit.edu Caroline Fortunato; Rika Anderson; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse vent fluid, hydrothermal vents 45.933177 -130.013868 408956639 911799 661 5 1009 12 0.0 Metagenome 3300050120 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim1 60-64 DOE Joint Genome Institute (JGI) 3300050120 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.352987 19.047292 224705488 297024 54 15 69 16 Restricted 55.75 Metagenome 3300040285 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Ozarks Complex, AL, USA - LENO_064-M-20160829-COMP-DNA1 Battelle Memorial Institute 3300040285 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.85388 -88.16122 6598391 20873 33 3 76 3 0.0 Metagenome 3300029552 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35630 Beijing Genomics Institute (BGI) 3300029552 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 140840826 175292 117 1 166 1 0.0 Metagenome 3300070816 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Arizona, USA - SRER_005-M-20190806-COMP-DNA1 3300070816 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 18385917 52267 75 10 130 19 0.0 Metagenome 3300009590 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Little Hot Creek, USA to study Microbial Dark Matter (Phase II) - LHC4sed_replicate DOE Joint Genome Institute (JGI) 3300009590 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes brian.hedlund@unlv.edu; rstepanauskas@bigelow.org Brian Hedlund; Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring 37.6906 -118.8442 6.83 185139994 427773 183 0 246 0 SRX2753915 Unrestricted 0.0 Metagenome 3300010375 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG DOE Joint Genome Institute (JGI) 3300010375 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 5539592621 11746245 3792 376 6341 643 SRX3203316, SRX3203315 Unrestricted 0.0 Metagenome 2100351010 *Microbiome Draft Groundwater dechlorinating microbial community from Kitchener, Ontario, containing dehalobacter Groundwater dechlorinating microbial community from TCA/MEAL culture DOE Joint Genome Institute (JGI) 2100351010 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes elizabeth.edwards@utoronto.ca Elizabeth Edwards, Elizabeth A. Edwards No Engineered Bioremediation Chloroethene Tetrachloroethylene and derivatives Bioreactor Groundwater 43.449776 -80.489086 7 64373035 119855 20 2 16 0 Unrestricted 0.0 Metagenome 3300000249 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2009 P12 1000m DOE Joint Genome Institute (JGI) 3300000249 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 48.97 -130.666667 9631090 31919 16 14 45 18 Unrestricted 0.0 Metagenome 3300022482 *Microbiome Permanent Draft Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain - individual 12 Autonomous University of Barcelona 3300022482 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.38 -0.51 14438064 19279 16 0 19 0 0.0 Metagenome 3300041677 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_60 MetaG AgResearch, New Zealand, Mosgeil 3300041677 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 2520474397 5086346 236 38 1337 50 0.0 Metagenome 3300023086 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_7_MG DOE Joint Genome Institute (JGI) 3300023086 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Inlet Marine Unclassified seawater 48.64 -123.5 573455247 1789665 684 61 1264 115 SRX4480173 Unrestricted 8.89 Metagenome 3300036671 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Lake Nicholson #988 DOE Joint Genome Institute (JGI) 3300036671 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.6094 78.2302 251884420 455087 122 58 174 114 SRX8865305 Unrestricted 36.77 Metagenome 3300045804 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - G3-R1-A DOE Joint Genome Institute (JGI) 3300045804 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3549 19.0438 66480558 179484 101 3 186 14 Unrestricted 4.79 Metagenome 3300025484 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 210 deep-092012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025484 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 272728111 514881 115 2 197 1 SRX1987659 Unrestricted 0.0 Metagenome 3300066308 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Atlantic Neotropical, PR, USA - GUAN_006-M-20161005-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066308 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 17.96955 -66.8687 19996068 56725 73 3 145 7 0.0 Metagenome 3300000852 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from University of Liverpool Illum_XT1_MetaVelvet University of Liverpool 3300000852 Metagenome Analysis Meta-Velvet released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 15719488 48876 70 0 108 0 0.0 Metagenome 3300042802 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_10_10 NMDC pilot DOE Joint Genome Institute (JGI) 3300042802 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 14450032 24071 29 0 26 0 SRX2924360 0.0 Metagenome 3300010240 *Microbiome Permanent Draft Terrestrial oil reservoir microbial communities from Alaska Terrestrial oil reservoir microbial community from Kuparuk Formation, Alaska - K2 Yale Center for Genome Analysis 3300010240 Metagenome Analysis idba-ud released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis Yes 26787827 Environmental Terrestrial Unclassified Oil reservoir Unclassified produced fluid 70.4 -148.7 1309288874 7064235 843 187 1218 592 0.0 Metagenome 3300013697 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01123 Weill Cornell Medical College 3300013697 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.91 19330558 26446 12 0 13 0 SRX823078 0.0 Metagenome 3300009777 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water DOE Joint Genome Institute (JGI) 3300009777 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes rstepanauskas@bigelow.org; paul.van.der.wielen@kwrwater.nl; brian.hedlund@unlv.edu Ramunas Stepanauskas; Paul van der Wielen; Brian Hedlund No Environmental Aquatic Drinking water Freshwater Unchlorinated Wastewater 52.2278 5.919 8 984889382 1859492 1063 17 1753 31 SRX2753925 Unrestricted 0.0 Metagenome 3300040856 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Estuary water microbial communities from Narragansett Bay, Rhode Island, USA - E3_negO2B DOE Joint Genome Institute (JGI) 3300040856 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.9078 -71.5683 844412205 1273175 415 55 554 89 SRX9641546 Unrestricted 17.32 Metagenome 3300013901 *Microbiome Permanent Draft Baboon gut microbial communities from fecal samples in Kenya Baboon gut microbial communities from fecal samples in Kenya - M12 Duke University 3300013901 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Baboon gut 2.717 37.1 86287825 170380 83 0 141 1 SRX834643 0.0 Metagenome 3300002806 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A1-10 DOE Joint Genome Institute (JGI) 3300002806 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 157019 531 24 2 44 0 SRX1991115 Unrestricted 0.0 Metagenome 3300043248 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8SP15 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043248 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 127280781 279873 140 1 208 2 SRX8379682 Unrestricted 30.31 Metagenome 3300044784 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_123 DOE Joint Genome Institute (JGI) 3300044784 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 524524366 1313496 407 9 729 23 Unrestricted 7.04 Metagenome 3300061202 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Great Basin, Onaqui, Utah, USA - ONAQ_008-M-20210524-comp-1 DOE Joint Genome Institute (JGI) 3300061202 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Shrubland Soil Unclassified Terrestrial soil 40.15854 -112.521574 917662755 1716085 552 36 1118 53 Unrestricted 22.53 Metagenome 3300070425 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Mountain Lake Biological Station, Virginia, USA - MLBS_006-M-20180612-COMP-DNA1 3300070425 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 18932971 58960 65 3 101 8 0.0 Metagenome 3300070990 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Marvin Klemme Range Research Station, Oklahoma, USA - OAES_002-M-20180530-COMP-DNA1 3300070990 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 28056552 78479 60 2 114 6 0.0 Metagenome 3300014686 *Microbiome Permanent Draft Surface and well water microbial communities from Bara Haldia, Bangladesh Well water microbial communities from Bangladesh - BaraHaldiaGW0309 University of Tennessee 3300014686 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Groundwater Freshwater Unclassified Well water 27356794 64606 21 0 51 0 0.0 Metagenome 3300013221 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100753 University of Pennsylvania 3300013221 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 11846696 27294 19 10 46 17 SRX756097 0.0 Metagenome 3300003864 *Microbiome Permanent Draft Dichloromethane enrichment microbial communities from Australia Dichloromethane enrichment community from Australia - AusDCM University of New South Wales 3300003864 Metagenome Analysis De Bruijn Graph De Novo Assembler released per JGI data release policy No Yes w.yiekuan@gmail.com Yie Kuan Wong No Environmental Terrestrial Unclassified Soil Contaminated Soil 9699906 9478 0 0 0 0 0.0 Metagenome 3300042179 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Eunicella verrucosa from Algarve, Portugal - EV03H v2 Molecular Research LP (MR DNA) 3300042179 Metagenome Analysis Metawrap workflow v. 1.0.8 released by JGI data releasing policy Yes Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 42298584 43386 3 0 2 7 0.0 Metagenome 3300020347 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994) CEA Genoscope 3300020347 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 32.1 17.7 350554878 852803 372 51 587 136 0.0 Metagenome 7000000553 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764042746 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000553 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 52740134 107125 0 0 0 0 0.0 Metagenome 3300036825 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in New South Wales, Australia - Pe_6 DOE Joint Genome Institute (JGI) 3300036825 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil -34.5 150.0 833721054 1426574 267 23 473 30 SRX8386928 Unrestricted 31.44 Metagenome 3300011111 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.2 Toyama Prefectural University 3300011111 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Sediment marine 37.035 137.41472 98440549 255823 29 2 75 3 0.0 Metagenome 3300006107 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE23Oct07 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006107 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 305306587 841458 271 85 413 135 SRX2565291 Unrestricted 0.0 Metagenome 3300031805 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23 DOE Joint Genome Institute (JGI) 3300031805 Metagenome Analysis spades v. 3.13.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1776877786 4361211 495 3 824 4 SRX5817226 Unrestricted 14.06 Metagenome 3300025971 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025971 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.198971 -122.026955 223891873 456133 164 3 286 3 SRX7142965 Unrestricted 0.0 Metagenome 3300025736 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKN (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025736 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 477169979 1125760 211 0 346 2 SRX2747202 Unrestricted 0.0 Metagenome 3300002043 *Microbiome Permanent Draft Soil microbial communities from Amlakhadi River, Gujarat, India Soil microbial communities from Amlakhadi River, Gujarat, India - Sample 8 3300002043 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Aquatic River Freshwater Sediment Soil 21.636337 72.989458 0 0 0 0 0 0 0.0 Metagenome 3300033433 *Microbiome Permanent Draft Lab enriched peat soil microbial communities from two peatlands near Ithaca, NY, United States Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN DOE Joint Genome Institute (JGI) 3300033433 Metagenome Analysis spades v. 3.13.0 Yes Yes rer26@cornell.edu Ruth Richardson No Environmental Terrestrial Wetlands Soil Peat peat soil 42.3286 -76.4792 4553246111 10389351 2416 7 4449 20 SRX6468724 Unrestricted 8.0 Metagenome 3300011244 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 18 - S13.2.60.3.a - transect 2, repeat 3, age 113 years, surface depth) University of Bristol 3300011244 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes EAEloeFadrosh@lbl.gov; maisie.nash@bristol.ac.uk; ama@envs.au.dk Emiley Eloe-Fadrosh; Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 78.97888889 12.33222222 7.5 52131008 111816 62 5 138 7 0.0 Metagenome 3300059774 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059774 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2327 -123.9168 137385957 329469 191 23 293 44 SRX2753610 Unrestricted 0.0 Metagenome 3300007112 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Stylissa sp. microbiome, Papua New Guinea CO2seep, Dobu ""control"", st5dc" University of New South Wales 3300007112 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Stylissa sp. (marine sponge) -9.752083 150.854133 170242571 412509 20 14 30 25 0.0 Metagenome 3300001127 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP2633 DOE Joint Genome Institute (JGI) 3300001127 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Unclassified Marine Unclassified Deep ocean 20.0 -52.63 53880225 125121 68 9 114 14 SRX1981969 Unrestricted 0.0 Metagenome 3300029919 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_2 DOE Joint Genome Institute (JGI) 3300029919 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 447079194 1036226 260 47 469 79 SRX5355599 Unrestricted 9.38 Metagenome 3300049242 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB23 DOE Joint Genome Institute (JGI) 3300049242 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 43947057 108684 160 4 350 5 Unrestricted 26.92 Metagenome 3300003217 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-6-D DOE Joint Genome Institute (JGI) 3300003217 Metagenome Analysis Yes Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 165828723 365890 329 45 541 61 SRX2568494 Unrestricted 0.0 Metagenome 3300037566 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - ARW1_20151102 DOE Joint Genome Institute (JGI) 3300037566 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 216052203 322409 109 10 136 9 SRX9140354 Unrestricted 60.57 Metagenome 3300028416 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 15D DOE Joint Genome Institute (JGI) 3300028416 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 228769325 441214 128 30 192 51 SRX5171149 Unrestricted 21.26 Metagenome 3300017417 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_07NOV2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017417 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 183249013 376416 204 145 297 253 SRX3927729 Unrestricted 6.29 Metagenome 3300011422 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT640_2 DOE Joint Genome Institute (JGI) 3300011422 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8894 -106.908 328785650 750665 393 28 796 65 SRX3539182 Unrestricted 0.0 Metagenome 3300053141 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 endosphere DOE Joint Genome Institute (JGI) 3300053141 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121529 -123.27034 316549995 439512 66 95 110 101 Unrestricted 10.56 Metagenome 3300002963 *Microbiome Draft Feedstock adapted compost microbial communities from Newby Island compost facility, Milpitas CA Feedstock adapted compost microbial communities from Newby Island compost facility, Milpitas, CA, USA - starting DNA DOE Joint Genome Institute (JGI) 3300002963 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 Released by Nikos bc they passed the 6 months embargo date Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Solid waste Composting Feedstock Unclassified Feedstock adapted compost 37.454581 -121.928712 306997490 631795 581 13 1085 29 Unrestricted 0.0 Metagenome 3300049424 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River, Colorado, USA - Brdu+_Short DOE Joint Genome Institute (JGI) 3300049424 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 172986121 427048 266 10 426 19 Restricted 15.68 Metagenome 3300055528 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.19C.9 SIP fraction DOE Joint Genome Institute (JGI) 3300055528 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 248187754 486169 146 20 231 24 Unrestricted 11.58 Metagenome 3300049859 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Virginia, USA - lewisrun_2019_sed_WHONDRS-S19S_0014 DOE Joint Genome Institute (JGI) 3300049859 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 39.0941 -77.9808 284995705 723851 697 6 1373 12 Restricted 0.0 Metagenome 3300014137 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_208 The George Washington University (GWU) 3300014137 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 92481928 168968 88 1 147 5 SRX656253 0.0 Metagenome 3300040977 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - ADO3 Michigan State University 3300040977 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 46.0 -168.0 36076882 94170 5 3 5 1 0.0 Metagenome 3300036480 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C4-5A DOE Joint Genome Institute (JGI) 3300036480 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 157973093 491212 335 6 603 12 SRX8786858 Unrestricted 4.79 Metagenome 3300044542 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - DMB5_3SRT_B DOE Joint Genome Institute (JGI) 3300044542 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35894622 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 216105019 338920 230 2 282 4 SRX12654474 Unrestricted 50.32 Metagenome 3300047462 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Western Region, Iceland - Sphagnum teres H1_TE_ICE DOE Joint Genome Institute (JGI) 3300047462 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 2946476429 3690696 683 117 864 185 SRX14752944 Unrestricted 23.59 Metagenome 3300008351 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 158337416 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008351 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 1945427 2091 1 0 1 0 0.0 Metagenome 3300026819 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 59 (SPAdes) DOE Joint Genome Institute (JGI) 3300026819 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 44903906 101777 57 0 125 1 SRX4341058 Unrestricted 0.0 Metagenome 3300035216 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2013_10m DOE Joint Genome Institute (JGI) 3300035216 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 50.0 -145.0 714094341 1513957 289 105 403 163 SRX8188380 Unrestricted 10.37 Metagenome 3300042835 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183 NMDC pilot DOE Joint Genome Institute (JGI) 3300042835 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92029772 -106.94875926 1585374860 3750467 735 12 1328 25 SRX5354724 0.0 Metagenome 3300070880 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_001-M-20190619-COMP-DNA1 Battelle Memorial Institute 3300070880 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 45.844033 -121.999068 4.91-5.12 60707029 178788 83 13 155 28 0.0 Metagenome 3300026284 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_6/14/2005_ DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026284 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 228922633 373711 147 12 192 23 SRX2518136 Unrestricted 0.0 Metagenome 3300007828 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human attached/keratinized gingiva microbial communities from NIH, USA - visit 2, subject 763961826 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007828 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Attached/Keratinized gingiva Human 39.0042816 -77.1012173 42446760 86967 46 0 67 0 0.0 Metagenome 3300000183 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P20 500m DOE Joint Genome Institute (JGI) 3300000183 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 49.566667 -138.666667 47736055 127075 50 8 92 11 Unrestricted 0.0 Metagenome 7000000713 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159551223 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000713 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 136797959 256145 0 0 0 0 0.0 Metagenome 3300039925 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 087_R1_022417 University of Maryland 3300039925 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.69044444 27.07222222 21138464 35083 40 2 51 2 0.0 Metagenome 3300015328 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12JUL2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015328 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 197047115 338761 9 123 19 221 SRX3923445 Unrestricted 7.8 Metagenome 3300000075 *Microbiome Permanent Draft Freshwater microbial plankton communities from Lake Konstanz, Germany Freshwater microbial plankton communities from Lake Konstanz, Germany, sample GS697_0.1 um size class J. Craig Venter Institute (JCVI) 3300000075 Metagenome Analysis released per JGI data release policy No Yes david.schleheck@uni-konstanz.de David Schleheck No Environmental Aquatic Lentic Freshwater Epilimnion Freshwater 47.451381 9.073833 0 0 0 0 0 0 0.0 Metagenome 3300047180 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2015 IH-HC-7_7cm DOE Joint Genome Institute (JGI) 3300047180 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.2151 19.0271 261420334 448038 166 0 391 1 Restricted 19.85 Metagenome 3300002131 *Microbiome Permanent Draft Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t2BS1 (111f) 3300002131 Metagenome Analysis released by JGI data releasing policy No Yes daniel.herlemann@io-warnemuende.de, daniel.herlemann@emu.ee Daniel Herlemann, Daniel P. Herlemann No Environmental Aquatic Unclassified Unclassified Unclassified Marine 57.305 20.0745 131407503 510905 97 28 155 41 0.0 Metagenome 3300070694 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_048-M-20180926-COMP-DNA1 3300070694 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 6514807 21144 52 9 116 8 0.0 Metagenome 3300016640 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Site 230 with 0.8UM filter J. Craig Venter Institute 3300016640 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater -68.4 78.18278 8.31 13652260 33259 13 0 22 0 0.0 Metagenome 3300017538 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS379 with 0.8UM filter JGI facility at Oak Ridge National Laboratory 3300017538 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 25574370 54176 60 4 66 8 0.0 Metagenome 3300009001 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG DOE Joint Genome Institute (JGI) 3300009001 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Pond water 37.4973 -122.1295 647276833 1335877 497 108 823 187 SRX3203234 Unrestricted 0.0 Metagenome 3300046685 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-C1 40-44 DOE Joint Genome Institute (JGI) 3300046685 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0435 431390802 696567 236 0 358 1 Restricted 12.75 Metagenome 3300019844 *Microbiome Permanent Draft Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil - Buba_C1 Center for Advanced Technologies in Genomics, Sao Paulo University 3300019844 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 35440946 64165 47 0 69 0 0.0 Metagenome 3300053033 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - HDCcR2C-21 DOE Joint Genome Institute (JGI) 3300053033 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 414140357 720788 384 5 515 5 Unrestricted 0.0 Metagenome 3300039205 *Microbiome Permanent Draft Acid mine drainage microbial biofilm communities from Richmond Mine, California, USA Acid mine drainage biofilm communities from Richmond mine site C10, Iron Mt, CA, USA - AMDC100806 University of California, Berkeley 3300039205 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 40.67542 -122.53025 11703435 19091 6 1 13 0 0.0 Metagenome 3300041842 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - TR_35_wk_5 DOE Joint Genome Institute (JGI) 3300041842 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9957 -107.075 184302298 495076 197 11 364 19 SRX14809969 Unrestricted 7.09 Metagenome 3300029473 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001877-24 Beijing Genomics Institute (BGI) 3300029473 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 132967361 163140 95 0 156 0 0.0 Metagenome 3300006649 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T5 (2) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006649 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl .ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 44233015 86102 51 0 84 0 0.0 Metagenome 3300054046 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_4_150 re-annotation DOE Joint Genome Institute (JGI) 3300054046 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 222136994 420697 157 0 216 0 SRX3002042 0.0 Metagenome 2124908045 *Microbiome Permanent Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011 DOE Joint Genome Institute (JGI) 2124908045 Metagenome Analysis Released by Nikos No Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.1049 -96.6054 561487511 1700721 259 11 533 0 0.0 Metagenome 3300040397 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_004-M-20160719-COMP-DNA1 Battelle Memorial Institute 3300040397 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 5437779 15584 14 0 14 0 0.0 Metagenome 3300054565 *Microbiome Permanent Draft Soil microbial communities from pasture in Hopland Research and Extension Center, CA, USA Soil viral communities from pasture in Hopland Research and Extension Center, CA, USA - T2-H2O-A library kit 1SPlus DOE Joint Genome Institute (JGI) 3300054565 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes trubl1@llnl.gov Gareth Trubl No Environmental Terrestrial Pasture Soil Unclassified Soil 39.00177 -123.06967 119995539 313791 77 1 130 2 Unrestricted 134.72 Metagenome 3300006968 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Final time point T65 (2) (BES) benzoate enrichments of Methanogenic microbial communities using Athabasca oil sands as inoculum Shell Corporation 3300006968 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 25342001 45258 36 0 62 0 0.0 Metagenome 3300043821 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_CSTR_024 (downsampled for mapping) DOE Joint Genome Institute (JGI) 3300043821 Metagenome Analysis metaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 54148616 54520 46 0 45 0 SRX12727596, SRX12727597, SRX12727598, SRX12727599 Unrestricted 0.0 Metagenome 3300006048 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 DOE Joint Genome Institute (JGI) 3300006048 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Host-associated Plants Endosphere Roots Unclassified Populus endosphere 35.8443 -83.9607 3448730310 11528002 1965 23 3638 82 SRX2748467 Unrestricted 0.0 Metagenome 3300014719 *Microbiome Permanent Draft Human skin microbial communities from psoriasis patients in Trento, Italy Human skin microbial communities from psoriasis patients in Trento, Italy - SKCT13_b2_21 University of Trento 3300014719 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Skin surface Human skin 46.0667 11.1167 8153932 12115 8 0 17 2 SRX1015720 0.0 Metagenome 3300034037 *Microbiome Permanent Draft Deception Metagenome Fumarole sediment microbial communities from Whalers Bay, Deception Island, Antarctica - WBA1 The Brazilian National Council for Scientific and Technological Development (CNPq) 3300034037 Metagenome Analysis IDBA-ud v. 1.1.1 released per Amanda Bendia -- GOLD-1013 No Yes amandagbendia@gmail.com Amanda Bendia No Environmental Aquatic Volcanic Marine Unclassified fumarole sediment -63.18 -60.67 71878830 92089 24 1 56 1 0.0 Metagenome 3300026282 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_7/15/2010_ DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026282 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 199334044 316508 117 11 160 12 SRX2714330 Unrestricted 0.0 Metagenome 3300032216 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada - Lake 06-127 Genome Quebec 3300032216 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.987435 -74.066741 611404591 1302773 297 38 553 97 0.0 Metagenome 7000000498 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 160502038 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000498 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 189692878 298940 0 0 0 0 0.0 Metagenome 3300044544 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_CSTR_078 DOE Joint Genome Institute (JGI) 3300044544 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 105656620 156640 95 1 149 1 SRX12655143 Unrestricted 154.88 Metagenome 3300045835 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_3_B DOE Joint Genome Institute (JGI) 3300045835 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 136540785 158044 86 1 96 1 Unrestricted 122.6 Metagenome 3300023298 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #183 DOE Joint Genome Institute (JGI) 3300023298 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 173692067 354635 208 1 307 0 SRX4396746 Unrestricted 11.42 Metagenome 3300006915 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius crassitunicatus.1 DOE Joint Genome Institute (JGI) 3300006915 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 47051381 128712 37 1 78 3 SRX2705661 Unrestricted 0.0 Metagenome 3300013848 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - seawater enrichment SCG48 University of British Columbia 3300013848 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 2248946 4318 6 0 4 0 SRX143157 0.0 Metagenome 3300011695 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00436 Weill Cornell Medical College 3300011695 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.88 30730355 41616 14 2 14 1 SRX822405 0.0 Metagenome 3300008722 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 160502038 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008722 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 190257553 263503 148 0 218 0 0.0 Metagenome 3300046366 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_29 DOE Joint Genome Institute (JGI) 3300046366 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 481040225 1269808 1475 34 2816 38 Restricted 0.0 Metagenome 3300070692 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Colorado, USA - CPER_003-M-20210628-COMP-DNA1 3300070692 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 997024068 2788991 819 20 1787 35 0.0 Metagenome 3300012328 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100322 University of Pennsylvania 3300012328 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 22805539 39236 10 10 20 13 SRX756335 0.0 Metagenome 3300001268 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 12SEP2008 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300001268 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.099444 -89.404444 10284738 24778 28 3 40 18 SRX3310672 Unrestricted 0.0 Metagenome 3300009461 *Microbiome Permanent Draft Host-associated microbial communities of aphids from plants in several locations around USA Microbial communities of aphids from Rhamnus cathartica in Ottawa, Ontario, CA - Aphis nasturtii CNC#HEM071789 seqcov University of Texas, Austin 3300009461 Metagenome Analysis CLC Genomics released per JGI data release policy Yes Yes becky.chong@utexas.edu Rebecca Chong No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Rhamnus cathartica 45.4516 -75.68045 278588191 134106 1 1 2 1 0.0 Metagenome 3300026151 *Microbiome Permanent Draft Utah desert microbiome from environmental samples near Hanksville, Utah, USA Rock biofilm microbial communities from Utah desert near Hanksville, Utah, USA - E3.2 McGill University 3300026151 Metagenome Analysis canu v. 1.7 released by Catherine Maggiori No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Terrestrial Unclassified Soil Desert Rock biofilm 38.41709915 -110.78539335 27990332 32580 29 0 29 0 0.0 Metagenome 3300041844 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_273 MetaG AgResearch, New Zealand, Mosgeil 3300041844 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1635937690 2939568 248 28 776 48 0.0 Metagenome 3300046017 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Para, Brazil - P21 DOE Joint Genome Institute (JGI) 3300046017 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Pasture Soil Agricultural land Soil -3.3129 -54.9096 601447608 1466545 516 5 960 14 Restricted 0.0 Metagenome 3300003125 *Microbiome Permanent Draft Lyns pardinus fecal microbial communities from Santa Elena, Jaen, Spain Lyns pardinus fecal microbial communities from Santa Elena, Jaen, Spain Institute of Catalysis, The Higher Council for Scientific Research (CSIC) 3300003125 Metagenome Analysis Newbler v. 2.5.3 Made public because these are downloaded from Genbank No Yes mferrer@icp.csic.es Manuel Ferrer Yes 23251564 Host-associated Mammals Large intestine Digestive system Fecal Lyns pardinus fecal 38.339019 -3.536727 18005112 23217 64 2 99 1 0.0 Metagenome 3300042341 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME21Jun2018-rr0716 DOE Joint Genome Institute (JGI) 3300042341 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 617824209 1019923 255 65 385 89 Unrestricted 17.59 Metagenome 3300019842 *Microbiome Permanent Draft Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil - Buba_C2 Center for Advanced Technologies in Genomics, Sao Paulo University 3300019842 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 8685477 20379 34 0 58 0 0.0 Metagenome 3300021982 *Microbiome Permanent Draft Metagenomes from anaerobic digester of solid waste Food waste microbial community from Durham, Ontario, Canada - FW1 spades University of Toronto 3300021982 Metagenome Analysis SPAdes-3.10.1 Yes Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Engineered Solid waste Unclassified Food waste Unclassified food waste 44.1763 -80.8185 1963063731 3972387 315 82 499 215 SRX4986161, SRX4965146 0.0 Metagenome 3300029292 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021218-37 Beijing Genomics Institute (BGI) 3300029292 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 157976790 198204 105 0 150 0 0.0 Metagenome 3300033807 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_10 DOE Joint Genome Institute (JGI) 3300033807 Metagenome Analysis spades v. 3.13.0 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Unclassified peatland -6.3272 -74.8136 317699741 930908 408 19 758 41 SRX7525190 Unrestricted 5.94 Metagenome 3300048761 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - CP-10C DOE Joint Genome Institute (JGI) 3300048761 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.0477 795400279 1524931 254 9 457 19 Unrestricted 0.0 Metagenome 3300016404 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 DOE Joint Genome Institute (JGI) 3300016404 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Unclassified Soil 18.321 -65.8172 3071319394 6690976 1076 52 1985 91 SRX5634820, SRX3604196 Unrestricted 0.0 Metagenome 3300044782 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_189 DOE Joint Genome Institute (JGI) 3300044782 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 437691222 1138743 474 19 879 24 Unrestricted 7.57 Metagenome 3300061204 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Great Basin, Onaqui, Utah, USA - ONAQ_003-M-20210527-comp-1 DOE Joint Genome Institute (JGI) 3300061204 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Shrubland Soil Unclassified Terrestrial soil 40.205921 -112.430276 972576048 1739921 494 10 939 15 Unrestricted 20.36 Metagenome 3300005806 *Microbiome Permanent Draft Microbial communities from mouse gut A Catalogue of the Mouse Gut Metagenome - Mouse fecal microbial communities from multiple locations Beijing Genomics Institute (BGI) 3300005806 Metagenome Analysis SOAPdenovo No Yes xiayan@genomics.cn Xia Yan No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 22.55 -114.08 1940558955 2432062 179 4 307 5 0.0 Metagenome 3300013579 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100148 University of Pennsylvania 3300013579 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3699259 5893 8 0 16 3 SRX756384 0.0 Metagenome 3300070370 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Florida, USA - DSNY_003-M-20180822-COMP-DNA1 3300070370 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 23081451 69095 39 3 100 11 0.0 Metagenome 3300014318 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rd DOE Joint Genome Institute (JGI) 3300014318 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.000637 -121.624207 362213290 931514 405 6 810 15 SRX7188165 Unrestricted 0.0 Metagenome 3300037657 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Coal bed water microbial communities from the Powder River Basin, Montana, United States - T1YRFGM DOE Joint Genome Institute (JGI) 3300037657 Metagenome Analysis metaspades v. 3.13.0 Yes Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Aquatic Groundwater Deep subsurface Coalbed methane well water coal bed water 45.4351 -106.3922 991354541 1258636 367 18 520 24 SRX9390258 Unrestricted 24.94 Metagenome 3300013441 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100487 University of Pennsylvania 3300013441 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 668895 1755 5 0 6 0 SRX756511 0.0 Metagenome 3300012235 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100116 University of Pennsylvania 3300012235 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 11358696 29331 21 0 29 1 SRX756714 0.0 Metagenome 3300070245 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Bartlett Experimental Forest, New Hampshire, USA - BART_024-O-20170614-COMP-DNA1 3300070245 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 233021951 590395 155 17 295 32 0.0 Metagenome 3300037045 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Coal bed water microbial communities from the Powder River Basin, Montana, United States - T6FGP DOE Joint Genome Institute (JGI) 3300037045 Metagenome Analysis metaspades v. 3.13.0 Yes Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Aquatic Groundwater Deep subsurface Coalbed methane well water coal bed water 45.435 -106.392 703277856 894800 337 1 410 1 SRX8395081 Unrestricted 22.75 Metagenome 3300014559 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS64_0 University of Hohenheim 3300014559 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 108760969 173023 78 0 135 0 0.0 Metagenome 3300045179 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_3_A DOE Joint Genome Institute (JGI) 3300045179 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 175139269 212577 104 1 127 2 Unrestricted 85.73 Metagenome 3300043428 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Logan River, Logan, Utah, USA - logan1_2019_sw_WHONDRS-S19S_0097 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043428 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 41.7207 -111.8864 255641688 445516 318 123 492 197 Unrestricted 25.29 Metagenome 3300003862 *Microbiome Permanent Draft Sediment microbial communities from the mangroves in Sao Paulo State, Brazil Mangrove sediment microbial communities from Sao Paulo State, Brazil - Fosmideo_2_Clone_04 3300003862 Metagenome Analysis CLC bio released by JGI data releasing policy No Yes fdandreo@gmail.com Fernando Dini Andreote No Environmental Aquatic Intertidal zone Marine Sediment Sediment -23.8553 -46.1394 71263 124 0 0 0 0 0.0 Metagenome 3300029057 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 383_M Beijing Genomics Institute (BGI) 3300029057 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 150610821 211963 148 0 240 0 ERX491119 0.0 Metagenome 3300025509 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025509 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 230634214 539141 179 18 270 28 SRX1987241 Unrestricted 0.0 Metagenome 3300005043 *Microbiome Permanent Draft Deep marine subsurface microbial communities from Mid-Atlantic Ridge (IODP Expedition 336) Aquifer microbial communities from Mid-Atlantic Ridge, Atlantic Ocean - 1382A The Marine Biological Laboratory 3300005043 Metagenome Analysis IDBA-UD v1.1.1 Released bc the datasets have been published No Yes tully.bj@gmail.com, tully.bj@gmail.com; lmseyler@gmail.com Benjamin Tully, Benjamin Tully; Lauren Seyler Yes 26935537 Environmental Aquatic Aquifer Marine Formation fluid marine subseafloor aquifer 22.78 -46.09 215164140 320802 184 56 277 77 0.0 Metagenome 3300022736 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant dump, University of Wisconsin, Madison, United States - 2B110A DOE Joint Genome Institute (JGI) 3300022736 Metagenome Analysis spades v. 3.11.1-check Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0758 -89.4125 65182052 91827 57 2 62 3 SRX4663577 Unrestricted 77.5 Metagenome 3300020568 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 22JUN2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020568 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 126462038 278820 140 40 278 47 SRX1989777 Unrestricted 0.0 Metagenome 3300009815 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S1_0_10 DOE Joint Genome Institute (JGI) 3300009815 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37229149 -119.2718121 172181216 372903 152 9 286 7 SRX2523203 Unrestricted 0.0 Metagenome 3300049244 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB27 DOE Joint Genome Institute (JGI) 3300049244 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 27001237 67891 120 1 277 5 Unrestricted 28.45 Metagenome 3300002720 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A2-12 DOE Joint Genome Institute (JGI) 3300002720 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 327148 1095 28 0 45 0 SRX1991204 Unrestricted 0.0 Metagenome 2022920010 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP9 Dragon Spring, Norris Geyser Basin v2 (version 2) DOE Joint Genome Institute (JGI) 2022920010 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23755042 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.7318889 -110.7110833 3.1 13542958 20567 80 0 17 0 Unrestricted 0.0 Metagenome 3300049303 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA6 DOE Joint Genome Institute (JGI) 3300049303 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 358968260 905400 391 2 701 12 Unrestricted 7.59 Metagenome 3300025391 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE08Jun09 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025391 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 122857722 249892 87 28 133 46 SRX2565224 Unrestricted 0.0 Metagenome 3300059772 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1449C-3 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059772 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2327 -123.9168 115045436 283424 168 31 279 42 SRX2753612 Unrestricted 0.0 Metagenome 3300011242 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01328 Weill Cornell Medical College 3300011242 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.82 -73.87 54350498 94404 20 0 33 0 SRX823268 0.0 Metagenome 3300007114 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina ""bubble"", waterEBis4" University of New South Wales 3300007114 Metagenome Analysis IDBA-UD released by Emmanuelle BOTTE Yes Yes n.webster@aims.gov.au Nicole Webster No Environmental Aquatic Volcanic Marine Unclassified Volcanic CO2 seep seawater -9.8241 150.825833 223316005 535785 268 1 459 0 0.0 Metagenome 3300026076 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_DCM_ad_131m_LV_B (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300026076 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -0.4612 -23.033259 393752423 934972 374 21 674 41 SRX2719400 Unrestricted 0.0 Metagenome 3300001850 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM37, ROCA_DNA234_0.2um_Ob_C_2a 3300001850 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Lotic Freshwater Unclassified Marine plankton -1.919017 -55.525717 256037954 622248 50 15 196 29 0.0 Metagenome 3300049422 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River, Colorado, USA - 13-Glucose+Brdu_Short DOE Joint Genome Institute (JGI) 3300049422 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 206243091 485673 302 18 415 23 Restricted 16.37 Metagenome 3300005963 *Microbiome Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring microbial streamer communities from Conch Spring, Yellowstone National Park, USA - C T=80-84 v2 (version 2) DOE Joint Genome Institute (JGI) 3300005963 Metagenome Analysis SPADES v3.5.0 released based on JGI ITS Yes Yes nnivanova@lbl.gov, jim.fredrickson@pnnl.gov Natasha Ivanova, Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.5564135 -110.8321631 8 46964575 105967 34 0 31 0 Unrestricted 0.0 Metagenome 3300020515 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020515 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 86138917 205909 115 21 185 19 SRX1989922 Unrestricted 0.0 Metagenome 3300011424 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT200_2 DOE Joint Genome Institute (JGI) 3300011424 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9781 -107.003 308068545 768382 594 78 1261 116 SRX3539338 Unrestricted 0.0 Metagenome 3300011859 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway plastic -P00692 Weill Cornell Medical College 3300011859 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Plastic surface city subway plastic 40.82 -73.95 45170876 70287 22 0 33 0 SRX822659 0.0 Metagenome 3300031563 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-40 DOE Joint Genome Institute (JGI) 3300031563 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.759 -70.891 456395219 1004677 402 13 712 12 SRX5358500 Unrestricted 10.02 Metagenome 3300009868 *Microbiome Permanent Draft Activated sludge microbial community in wastewater treatment plant from Tai Wan Activated sludge microbial diversity in wastewater treatment plant from Tai Wan - Bali plant Bali plant Beijing Novogene Bioinformatics Technology Co., Ltd 3300009868 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes limeng848@gmail.com MENG LI No Engineered Wastewater Unclassified Activated Sludge Unclassified Wastewater 25.0 121.0 1824109622 2748717 1040 32 1621 51 0.0 Metagenome 3300007937 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 604812005 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007937 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 22667380 51442 29 0 52 0 0.0 Metagenome 3300020682 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 14NOV2007 hypolimnion DOE Joint Genome Institute (JGI) 3300020682 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 49769621 97947 51 9 87 13 Unrestricted 0.0 Metagenome 2228664000 *Microbiome Permanent Draft Panchlora sp. gut microbial communities from Gamboa, Panama Panchlora_midgut_metagenome v2 (version 2) DOE Joint Genome Institute (JGI) 2228664000 Metagenome Analysis Soap denovo, Newbler and minimus released based on JGI ITS No Yes currie@bact.wisc.edu Cameron Currie Yes 28545131 Host-associated Arthropoda: Insects Midgut Digestive system Unclassified Panchlora sp. gut 9.116667 -79.7 1005314116 1960847 134 0 270 0 Unrestricted 0.0 Metagenome 3300016656 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water reservoir in Singapore - WB_Site 6a, Aug Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016656 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Lake Freshwater Unclassified freshwater 1.35 103.87 57630432 72273 11 0 11 0 0.0 Metagenome 3300018920 *Microbiome Permanent Draft Populus soil microbial communities from riparian zone of different river systems in the western United States Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS DOE Joint Genome Institute (JGI) 3300018920 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jen.schweitzer@utk.edu Jennifer Schweitzer No Environmental Terrestrial Riparian zone Soil Trees stand soil 44.4668 -109.6253 3554162805 8475126 3363 288 5681 431 SRX3901430 Unrestricted 6.11 Metagenome 3300046754 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_160427.NP1 DOE Joint Genome Institute (JGI) 3300046754 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 563465025 1166177 356 36 482 51 Unrestricted 12.97 Metagenome 3300025160 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2 (version 2) DOE Joint Genome Institute (JGI) 3300025160 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 1078414831 2440730 949 20 1652 33 SRX1983613 Unrestricted 0.0 Metagenome 3300037312 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 DOE Joint Genome Institute (JGI) 3300037312 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 37.9315 -122.0212 1271720629 2038890 486 71 738 100 Unrestricted 38.15 Metagenome 3300018495 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet fungal communities from Santa Barbara, California, USA - pellet 2 DOE Joint Genome Institute (JGI) 3300018495 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4204 -119.6671 4124307000 7226082 8429 37 12972 56 SRX3963494 Unrestricted 12.15 Metagenome 3300046321 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_85 DOE Joint Genome Institute (JGI) 3300046321 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9703 -106.997 358123299 822163 739 261 1349 411 Restricted 0.0 Metagenome 3300009426 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_100420 DOE Joint Genome Institute (JGI) 3300009426 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de, hteeling@mpi-bremen.de; raperrier@lbl.gov; agrieb@mpi-bremen.de Hanno Teeling, Hanno Teeling; Rene A. Perrier; Anissa Grieb Yes 27054497, 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 510708240 1011810 473 90 660 140 SRX2999537 Unrestricted 0.0 Metagenome 3300029430 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 077_4_27_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029430 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 240452152 290844 244 1 301 0 0.0 Metagenome 3300054050 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_16_10 re-annotation DOE Joint Genome Institute (JGI) 3300054050 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 295153956 695797 231 19 429 28 SRX3003645 0.0 Metagenome 3300014912 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00413 Weill Cornell Medical College 3300014912 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.92 28604165 48169 19 1 28 5 SRX822383 0.0 Metagenome 3300039234 *Microbiome Permanent Draft Groundwater microbial communities from a tube well in Barasat, West Bengal, India - BS Groundwater microbial communities from a tube well in Barasat, West Bengal, India - BS09 CeGaT 3300039234 Metagenome Analysis Megahit v. 1.2.9 released by JGI data releasing policy No Yes anumeha.saha@gmail.com ANUMEHA SAHA No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 22.73733 88.47233 6.5-7.5 203406398 435895 320 5 753 3 0.0 Metagenome 3300044899 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_45CS DOE Joint Genome Institute (JGI) 3300044899 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4934 -106.0708 827159562 1382784 275 17 471 23 SRX20649827 Unrestricted 14.67 Metagenome 3300069341 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Moab, Southern Rockies & Colorado Plateau, UT, USA - MOAB_047-M-20170523-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069341 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.24833 -109.38827 45683948 139361 125 3 241 2 0.0 Metagenome 3300056879 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E1P_18_20 DOE Joint Genome Institute (JGI) 3300056879 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.996961 -81.487381 1705585981 2536699 633 3 1028 1 Unrestricted 15.18 Metagenome 3300010995 *Microbiome Permanent Draft CWC Coastal Marshes ECM14MPS05_Aassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method A (2X250bp) Molecular Research LP (MR DNA) 3300010995 Metagenome Analysis SPAdes 3.9.0 released by JGI data releasing policy No Yes aengel1@utk.edu Annette Engel No Environmental Aquatic Wetlands Freshwater Sediment sediment 29.45083 -89.75005 69794157 122158 56 1 86 2 0.0 Metagenome 3300029554 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P112V1 Beijing Genomics Institute (BGI) 3300029554 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 150688401 195751 118 0 175 0 0.0 Metagenome 3300039561 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_002-O-20170619-COMP-DNA1 Battelle Memorial Institute 3300039561 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 127288725 310038 158 17 289 38 0.0 Metagenome 3300032280 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada - Lake 06-131 Genome Quebec 3300032280 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.948123 -74.143544 462778656 935071 226 95 416 184 0.0 Metagenome 3300002028 *Microbiome Permanent Draft Permafrost and active layer soil microbial communities from McGill Arctic Research Station (MARS), Canada, for enrichment studies Permafrost and active layer soil microbial communities from McGill Arctic Research Station (MARS), Canada, for enrichment studies - Sample_A17 3300002028 Metagenome Analysis released by JGI data releasing policy No Yes Tullis Onstott; Tatiana Vishnivetskaya; Karuna Chourey; Susan M. Pfiffner;Alice Layton No Environmental Terrestrial Unclassified Soil Permafrost Permafrost and active layer soil 79.26 -90.46 183897245 773914 568 7 966 22 0.0 Metagenome 3300025482 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 210 shallow-092012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025482 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 213600239 492651 132 10 241 20 SRX1987660 Unrestricted 0.0 Metagenome 3300059413 *Microbiome Permanent Draft Sorghum rhizosphere and bulk soil microbial communities from University of Arizona Maricopa Agricultural Center, AZ, USA Soil microbial communities from unplanted plot in University of Arizona Maricopa Agricultural Center, AZ, USA - plot2ctr0-15_20210708 DOE Joint Genome Institute (JGI) 3300059413 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Agricultural land Soil Unclassified Soil 33.07735 -111.974819 526451628 1280693 593 13 1104 17 Unrestricted 7.2 Metagenome 3300003797 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE19Jun07 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003797 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Bog lake Freshwater Unclassified Freshwater 46.0072 -89.6063 55968035 131348 72 12 122 25 SRX2565406 Unrestricted 0.0 Metagenome 3300000854 *Microbiome Draft Wetland microbial communities from Twitchell Island in the Sacramento Delta Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site B2 Tule DOE Joint Genome Institute (JGI) 3300000854 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes stringe@lbl.gov, sgtringe@lbl.gov Susannah Tringe Yes 25991679 Environmental Aquatic Wetlands Marine Sediment Wetland 38.10726 -121.648538 105539119 321832 451 17 867 26 Unrestricted 0.0 Metagenome 3300055543 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.19W.8 SIP fraction DOE Joint Genome Institute (JGI) 3300055543 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 180036461 336652 83 18 167 16 Unrestricted 12.2 Metagenome 3300042804 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_10_12 NMDC pilot DOE Joint Genome Institute (JGI) 3300042804 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 18491549 26808 24 0 40 1 SRX2752461 0.0 Metagenome 3300022484 *Microbiome Permanent Draft Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain - individual 3 Autonomous University of Barcelona 3300022484 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.38 -0.51 19175940 23458 16 0 19 0 0.0 Metagenome 3300045802 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - P3-R3-A DOE Joint Genome Institute (JGI) 3300045802 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.0477 305872481 577368 130 8 182 8 Unrestricted 7.5 Metagenome 3300046514 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere DOE Joint Genome Institute (JGI) 3300046514 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1213 -123.2698 1062362307 1736145 295 91 494 116 Unrestricted 12.57 Metagenome 3300032331 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 17-091 Genome Quebec 3300032331 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.119508 -70.853652 646242266 1334472 371 93 633 220 0.0 Metagenome 3300023274 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L141-409B-4 DOE Joint Genome Institute (JGI) 3300023274 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 538741795 1196248 534 120 1012 194 SRX4799636 Unrestricted 8.04 Metagenome 7000000293 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 246515023 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000293 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 103540260 190016 0 0 0 0 0.0 Metagenome 3300044989 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_6_F DOE Joint Genome Institute (JGI) 3300044989 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 190989969 226603 113 1 142 1 Unrestricted 76.64 Metagenome 3300004018 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWC_D2 DOE Joint Genome Institute (JGI) 3300004018 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.015041 -122.501831 782249384 2166581 732 6 1461 19 SRX7142761 Unrestricted 0.0 Metagenome 3300023493 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_13A University of California, Irvine 3300023493 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 126909580 126290 22 0 29 0 0.0 Metagenome 7000000474 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159571453 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000474 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 9613824 16911 0 0 0 0 0.0 Metagenome 3300031834 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0 DOE Joint Genome Institute (JGI) 3300031834 Metagenome Analysis spades v. 3.12.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5895 -110.359 3018703001 6597898 1756 30 2851 61 SRX6380972 Unrestricted 10.74 Metagenome 3300004065 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWC_D2 DOE Joint Genome Institute (JGI) 3300004065 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 37.926434 -122.509186 1094989272 2840920 893 8 1793 16 SRX7142963 Unrestricted 0.0 Metagenome 3300007843 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 160319967 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007843 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 18071073 25354 19 0 29 0 0.0 Metagenome 3300024254 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK02 DOE Joint Genome Institute (JGI) 3300024254 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 240066160 610431 309 23 549 36 SRX4547500 Unrestricted 7.65 Metagenome 3300006740 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 370425937 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006740 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2139120 2688 1 0 3 0 0.0 Metagenome 3300037279 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_F2 DOE Joint Genome Institute (JGI) 3300037279 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 907944374 1846168 406 94 650 150 SRX8398201 Unrestricted 8.51 Metagenome 3300015204 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G2B, Ice surface) University of Bristol 3300015204 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.163011 -50.018445 6.7 341656927 613774 174 21 276 33 0.0 Metagenome 3300021388 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 DOE Joint Genome Institute (JGI) 3300021388 Metagenome Analysis spades v. 3.11.1-check Yes Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Host-associated Plants Unclassified Roots Unclassified plant roots -19.2822 -43.5936 1432409885 3379494 707 84 1300 133 SRX4939667 Unrestricted 9.0 Metagenome 3300012202 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG DOE Joint Genome Institute (JGI) 3300012202 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 2670272702 5556162 1429 110 2743 167 SRX3372679 Unrestricted 0.0 Metagenome 3300015343 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_12JUL2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015343 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 307104549 537191 8 61 10 70 SRX3923444 Unrestricted 10.0 Metagenome 3300043675 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 397-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043675 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9896 -107.0634 947372760 2080372 348 64 622 90 Unrestricted 8.21 Metagenome 3300029714 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36525 Beijing Genomics Institute (BGI) 3300029714 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 241224650 316608 195 1 283 1 0.0 Metagenome 3300007006 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - engineered for negative control 3 Cornell University 3300007006 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy Yes Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Engineered Unclassified Unclassified Unclassified Unclassified Negative control 42.445525 -76.480787 1382384 2721 1 0 1 0 0.0 Metagenome 3300001463 *Microbiome Permanent Draft Ecteinascidia turbinata symbiotic microbial communities from the Caribbean mangrove Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 1 DOE Joint Genome Institute (JGI) 3300001463 Metagenome Analysis Yes Yes davidhs@lsi.umich.edu David Sherman No Host-associated Tunicates Unclassified Ascidians Unclassified Ecteinascidia turbinata 24.5512 -81.8083 839356773 1665465 8 4 8 32 SRX2553646 Unrestricted 0.0 Metagenome 3300027613 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Olavius algarvensis symbiont microbial communities from Tuscany, Italy - Type A ELBA extract 2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027613 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 42.8072 10.1411 622025333 735741 11 1 11 2 SRX2554371 Unrestricted 0.0 Metagenome 3300044967 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - DOSP2-9-18-19 DOE Joint Genome Institute (JGI) 3300044967 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.0327 -120.69 1028755559 2298129 717 75 1248 95 Restricted 8.45 Metagenome 3300044655 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME03Nov2017-rr0915 DOE Joint Genome Institute (JGI) 3300044655 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 932488048 1415850 327 99 453 131 Unrestricted 24.04 Metagenome 3300012922 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG DOE Joint Genome Institute (JGI) 3300012922 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 2508621050 5017528 1333 43 2473 66 SRX3373048 Unrestricted 0.0 Metagenome 3300015612 *Microbiome Permanent Draft Wastewater microbial communities from the domestic sewers Wastewater microbial communities from domestic sewers in Singapore - Site F Nov Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300015612 Metagenome Analysis CLC workbench released by JGI data releasing policy No Yes erinscm@nus.edu.sg Charmaine Ng No Engineered Wastewater Unclassified Sewage Unclassified Wastewater 1.28362 103.859825 240930322 296755 43 1 51 0 0.0 Metagenome 3300040148 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 044B_R1 University of Maryland 3300040148 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 61.06278611 25.54026111 10009261 20134 15 3 24 5 0.0 Metagenome 3300011939 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00621 Weill Cornell Medical College 3300011939 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.8 -73.91 28969058 34520 21 0 23 0 SRX822588 0.0 Metagenome 3300021206 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina ""control"", cg17ic 200bp-microeukaryotes" University of New South Wales 3300021206 Metagenome Analysis IDBA-UD released by JGI data releasing policy Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Cinachyra sp. (marine sponge) -9.828217 150.820517 356489 730 0 0 0 0 0.0 Metagenome 3300012614 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100689 University of Pennsylvania 3300012614 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17205639 43940 18 0 24 0 SRX756405 0.0 Metagenome 3300014495 *Microbiome Permanent Draft Permafrost microbial communities from Stordalen Mire, Sweden Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG DOE Joint Genome Institute (JGI) 3300014495 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rich.270@osu.edu Virginia Rich Yes 30013118 Environmental Terrestrial Wetlands Soil Permafrost Palsa 68.35 19.05 1723979442 3214381 810 49 1323 97 SRX3593703 Unrestricted 6.79 Metagenome 3300014920 *Microbiome Permanent Draft Danish lakes Microbial communities Depth profiles Lake Almind and Hund Freshwater microbial communities from Lake Hund, Silkeborg, Region Midtjylland, Denmark - HUS_14.08.12_6m re-submission with coverage Odense University Hospital 3300014920 Metagenome Analysis MEGAHIT v1.1.1 released by JGI data releasing policy Yes Yes atreusch@biology.sdu.dk Alexander Treusch No Environmental Aquatic Lake Freshwater Unclassified Freshwater 56.04 9.54 5.8 32246859 68575 39 3 58 1 0.0 Metagenome 3300042716 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - K_c14.1 Re-assembly Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042716 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1247 -89.1411 60938448 59282 4 2 7 3 SRX5234796 0.0 Metagenome 3300004209 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG22_combo_CG10-13_8/21/14_all DOE Joint Genome Institute (JGI) 3300004209 Metagenome Analysis MEGAHIT v. 0.2.0 revert back to private per Christa Yes Yes jbanfield@berkeley.edu, jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield, Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 1311645270 3059113 2789 93 4942 140 SRX3348990 Unrestricted 0.0 Metagenome 3300030654 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Indian Ocean - SRB1 Michigan State University 3300030654 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 3.715 105.408333 81336338 250598 1 0 3 0 0.0 Metagenome 3300070702 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_005-M-20190715-COMP-DNA1 3300070702 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 145391 522 3 0 4 0 0.0 Metagenome 3300001930 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from the Tropical South Pacific Ocean - GS039 J. Craig Venter Institute (JCVI) 3300001930 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Oceanic Marine Unclassified Marine -3.3433332 -101.373886 641644 1142 1 0 0 0 0.0 Metagenome 3300048899 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Soil microbial communities from greenhouse in W.K. Kellogg Biological Station, Michigan, USA - KLW soil_5a N15 DOE Joint Genome Institute (JGI) 3300048899 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Environmental Terrestrial Unclassified Soil Unclassified Soil 42.40581 -85.40228 1679072492 2862598 595 24 1044 39 Unrestricted 14.24 Metagenome 3300016725 *Microbiome Draft Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA - Biofuel metagenome 3 DOE Joint Genome Institute (JGI) 3300016725 Metagenome Analysis Yes Yes hrbeller@lbl.gov Harry Beller Yes 29556105 Engineered Bioreactor Unclassified Anaerobic Unclassified Bioreactor 37.8754404 -122.2477251 279974009 443193 171 0 256 0 Unrestricted 0.0 Metagenome 3300037320 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Shield Lake #15 DOE Joint Genome Institute (JGI) 3300037320 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5278 78.2621 385069534 591531 87 79 120 90 SRX9173345 Unrestricted 23.47 Metagenome 3300027342 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F05 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027342 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 38954862 45212 50 0 44 0 SRX3195091 Unrestricted 0.0 Metagenome 3300040535 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_001-M-20160720-COMP-DNA1 Battelle Memorial Institute 3300040535 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 2916760 9653 38 1 75 4 0.0 Metagenome 3300027760 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027760 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 45.4091 -72.0994 830503208 1554764 457 225 727 346 SRX2996446 Unrestricted 0.0 Metagenome 3300035530 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B1.6_Sample1.Rodeo6.Well665 DOE Joint Genome Institute (JGI) 3300035530 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 174343814 283330 173 0 245 3 SRX8348943 Unrestricted 59.74 Metagenome 3300026863 *Microbiome Permanent Draft Cyanobacterial communities from the Joint Genome Institute, California, USA Cyanobacterial communities from the Joint Genome Institute, California, USA - FECB-27 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026863 Metagenome Analysis spades v. 3.11.1 Yes Yes mhess@ucdavis.edu Matthias Hess No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Cyanobacterial 37.9313884 -122.0239394 118759663 130789 38 0 49 0 SRX7698020 Unrestricted 0.0 Metagenome 3300014200 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin06_30_metaG DOE Joint Genome Institute (JGI) 3300014200 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1682437597 3331034 779 12 1254 32 SRX3292991 Unrestricted 6.44 Metagenome 3300002294 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 17MAY2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002294 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 32940097 82282 54 11 116 20 SRX1989750 Unrestricted 0.0 Metagenome 3300000117 *Microbiome Draft Marine microbial communities from Delaware Coast Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010 DOE Joint Genome Institute (JGI) 3300000117 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Marine 38.84917 -75.1076 575155359 1341985 255 33 462 40 Unrestricted 0.0 Metagenome 3300034076 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A5A4.2 DOE Joint Genome Institute (JGI) 3300034076 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 242215106 687514 427 2 758 6 SRX7658907 Unrestricted 6.64 Metagenome 3300002473 *Microbiome Permanent Draft Fumarolic subsurface microbial communities from Tramway Ridge at Mt. Erebus, Antarctica for carbon cycling studies in geothermal environments Geothermal fumarole subsurface microbial communities from Mt. Erebus, Antarctica - 1A2B DOE Joint Genome Institute (JGI) 3300002473 Metagenome Analysis revert back to private per Christa Yes Yes twoyke@lbl.gov, craig.herbold@microbial-ecology.net Tanja Woyke, Craig Herbold No Environmental Terrestrial Fumaroles Volcanic Unclassified Fumarolic subsurface -77.5182 167.1113 11221925 18183 8 0 8 0 SRX2555117 Unrestricted 0.0 Metagenome 3300025250 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025250 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Unclassified Roots Unclassified Arabidopsis root 35.9082 -79.0499 192092261 316271 92 3 124 8 SRX1991091 Unrestricted 0.0 Metagenome 3300026906 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_9_15 (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300026906 Metagenome Analysis spades v. 3.11.1 Yes Yes jim.fredrickson@pnnl.gov; binskeep@montana.edu Jim Fredrickson; William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.7315 -110.7113 3 90560287 160048 33 0 48 0 SRX2939974 Unrestricted 0.0 Metagenome 3300005292 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - site 2 B6 (version 3) (version 3) DOE Joint Genome Institute (JGI) 3300005292 Metagenome Analysis spades v. 3.1.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes rmkelly@ncsu.edu Robert Kelly No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6102 -110.4387 10372310 11400 19 0 16 3 SRX2554348, SRX2554349, SRX2554347, SRX2554354, SRX2554350 Unrestricted 0.0 Metagenome 3300011705 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100674 University of Pennsylvania 3300011705 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 19652303 49490 19 0 31 0 SRX756420 0.0 Metagenome 3300010412 *Microbiome Permanent Draft Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_10 Beijing Novogene Bioinformatics Technology Co., Ltd 3300010412 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Intertidal zone Marine Mangrove sediment Mangrove sediment 22.0 114.0 3206632918 5748591 2195 100 3816 171 0.0 Metagenome 3300029131 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019848-93 Beijing Genomics Institute (BGI) 3300029131 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 165652757 215827 144 0 227 0 0.0 Metagenome 3300033056 *Microbiome Permanent Draft Microbial communities from various environments in Magnetic Island Reef, Townsville, Australia Macroalgae surface microbial communities from Magnetic Island Reef, Townsville, Australia - 36441 AGRF 3300033056 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes b.glasl@aims.gov.au Bettina Glasl No Host-associated Algae Unclassified Brown Algae Unclassified Macroalgae surface -19.1531 146.8641 395619027 999485 238 23 378 70 0.0 Metagenome 3300050241 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Butler, South Dakota, USA - 105_901_SD_DR_1m_c3_T1_18O DOE Joint Genome Institute (JGI) 3300050241 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 45.27223 -97.8369 1292819933 1994817 465 17 705 27 Restricted 13.6 Metagenome 3300026226 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Midwestern USA - DC3-125 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026226 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 23604024 54344 30 9 41 12 SRX2770440 Unrestricted 0.0 Metagenome 3300025461 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 415-2 shallow-092012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025461 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 197774897 426388 191 14 308 17 SRX1987675 Unrestricted 0.0 Metagenome 7000000368 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 809635352 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000368 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 1330663 4082 0 0 0 0 0.0 Metagenome 3300071147 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone National Park, Wyoming, USA - YELL_009-M-20200708-COMP-DNA1 3300071147 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 14035524 44407 91 9 183 19 0.0 Metagenome 3300008018 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-06 DOE Joint Genome Institute (JGI) 3300008018 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 532799036 974164 517 29 882 43 SRX3197879 Unrestricted 0.0 Metagenome 3300048989 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_33CS DOE Joint Genome Institute (JGI) 3300048989 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4391 -106.0507 103279537 174855 63 37 105 43 SRX20649826 Unrestricted 0.0 Metagenome 3300008945 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T18 (2) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2) Shell Corporation 3300008945 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 131791872 460774 161 0 374 1 0.0 Metagenome 3300000506 *Microbiome Permanent Draft Anaerobic digester microbial communities from Soeholt, Denmark Anaerobic digester microbial communities from Northern Denmark, sample from Soeholt sludge Aalborg University 3300000506 Metagenome Analysis released per JGI data release policy No Yes starnas88@gmail.com Piotr Starnawski No Engineered Wastewater Dissolved organics (anaerobic) Nutrient removal Activated sludge Anaerobic digester 57.363486 10.268131 230012003 332092 42 0 99 0 0.0 Metagenome 3300042556 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME12Sep2002-rr0638 DOE Joint Genome Institute (JGI) 3300042556 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1358871452 2071119 505 57 696 78 Unrestricted 20.83 Metagenome 3300005057 *Microbiome Permanent Draft Marine and wastewater microbial communities from Korea, with extracellular vesicles Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2um Chunlab, Inc 3300005057 Metagenome Analysis IDBA-1.1.1 released per JGI data release policy No Yes s-jkim@kiost.ac Sang-Jin Kim No Environmental Aquatic Oceanic Marine Unclassified Marine water 37.0 131.0 162573701 406467 196 32 414 46 0.0 Metagenome 3300047394 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Hudson River, NewYork, USA - NASQAN2015_151 DOE Joint Genome Institute (JGI) 3300047394 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 41.7216 -73.9411 12317101 39015 40 2 69 3 Unrestricted 60.6 Metagenome 3300038450 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P21_D10 DOE Joint Genome Institute (JGI) 3300038450 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 504255641 695880 163 2 229 3 SRX9472191 Unrestricted 45.85 Metagenome 3300045689 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_2_F DOE Joint Genome Institute (JGI) 3300045689 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 150054278 171092 106 1 94 1 Unrestricted 134.52 Metagenome 3300040467 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_001-O-20160719-COMP-DNA1 Battelle Memorial Institute 3300040467 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 3257226 10441 28 5 62 9 0.0 Metagenome 3300003283 *Microbiome Permanent Draft Whitefly associated endosymbiont microbial communities from Neve Yaar, Israel Whitefly Bemisia tabaci associated secondary symbiont microbial communities from Neve Yaar, Israel - sample Cardinium_whitefly 3300003283 Metagenome Analysis released by JGI data releasing policy No Yes itaiopa6@gmail.com Itai Opatovsky No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Whitefly Bemisia tabaci associated 32.708101 35.179264 1103483 1437 3 0 4 0 0.0 Metagenome 3300022777 *Microbiome Permanent Draft Solar saltern microbial communities from the Namib Desert Halite microbial communities from solar saltern in the Namib Desert, Gobabeb, Namibia - Dark halite Hosabes 2017 Genewiz Inc. 3300022777 Metagenome Analysis SPAdes v. 3.6.0 released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Halite -23.5069722 15.07152778 374058577 560799 128 8 173 10 0.0 Metagenome 7000000315 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159268001 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000315 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 145951833 260380 0 0 0 0 0.0 Metagenome 3300028254 *Microbiome Permanent Draft Extreme environments viral communities from various locations Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SI3U DOE Joint Genome Institute (JGI) 3300028254 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Coastal Marine Brine sea-ice brine 71.3731 -156.5049 31124011 62148 33 3 40 3 SRX5247979 Unrestricted 292.87 Metagenome 3300034282 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16 DOE Joint Genome Institute (JGI) 3300034282 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 63.8785 -149.2588 895258249 2035097 448 37 746 69 SRX7633797 Unrestricted 6.9 Metagenome 3300026037 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleC_D2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026037 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.052509 -121.76873 53755599 139336 129 0 241 2 SRX7182414 Unrestricted 0.0 Metagenome 3300049486 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Washington, USA - columbiariver2_2019_sed_WHONDRS-S19S_0076 DOE Joint Genome Institute (JGI) 3300049486 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 46.679191 -119.462605 262219277 626362 609 25 1263 42 Unrestricted 9.78 Metagenome 3300008065 *Microbiome Permanent Draft Wastewater microbial communities from the domestic sewers Wastewater microbial communities from the domestic sewers in Singapore - Site 3 Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300008065 Metagenome Analysis CLC genomics workbench 8 released per JGI data release policy No Yes erinscm@nus.edu.sg Charmaine Ng No Engineered Wastewater Unclassified Sewage Unclassified wastewater 1.3 103.8 136567795 344840 52 8 128 9 0.0 Metagenome 3300037196 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 E2 20-24 DOE Joint Genome Institute (JGI) 3300037196 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0467 987810159 1759259 363 25 553 47 SRX8143634 Unrestricted 10.25 Metagenome 3300005645 *Microbiome Permanent Draft Brackish water microbial communities from Lake Sakinaw,Canada Brackish water microbial communities from Lake Sakinaw in Canada: eDNA_2 (120m) v2 (version 2) DOE Joint Genome Institute (JGI) 3300005645 Metagenome Analysis Unknown released based on JGI ITS Yes Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Brackish water 49.682207 -124.005217 436324495 981047 546 2 902 8 Unrestricted 0.0 Metagenome 3300040489 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_032-M-20170802-COMP-DNA1 Battelle Memorial Institute 3300040489 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 3751990 11430 40 2 67 1 0.0 Metagenome 3300048047 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BG2-15_pre-inc (version 2) DOE Joint Genome Institute (JGI) 3300048047 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3634 19.0475 212758973 402714 183 28 326 39 Restricted 0.0 Metagenome 3300029963 *Microbiome Permanent Draft Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil - Babi_C2 Reanalysis Center for Advanced Technologies in Genomics, Sao Paulo University 3300029963 Metagenome Analysis metaSPAdes v. 3.12.0 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 25139144 52974 67 0 89 1 0.0 Metagenome 3300045955 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P34SSC2_191111_c DOE Joint Genome Institute (JGI) 3300045955 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 1161034316 1753728 349 1 570 1 SRX20650185 Unrestricted 11.52 Metagenome 3300044726 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 027-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044726 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9568 -106.9861 662558536 1614930 615 9 1127 24 Unrestricted 7.02 Metagenome 3300038534 *Microbiome Permanent Draft Seawater viral communities from Osaka Bay, Japan Seawater viral communities from Osaka Bay, Japan - OBV_V3 Kyoto University 3300038534 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Seawater 34.1928 135.0715 9731036 25227 0 0 0 0 0.0 Metagenome 3300033171 *Microbiome Permanent Draft Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_31_05-R3 DOE Joint Genome Institute (JGI) 3300033171 Metagenome Analysis spades v. 3.13.0 Yes Yes ziels@mail.ubc.ca Ryan Ziels No Engineered Bioreactor Unclassified Anaerobic Unclassified sludge 51.9691 5.6654 438356150 690475 420 0 550 1 SRX7542617 Unrestricted 46.64 Metagenome 3300025868 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG23_combo_of_CG06-09_8/20/14_all (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025868 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 828639029 1404891 700 5 1041 10 SRX3367778 Unrestricted 0.0 Metagenome 3300014624 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00261 Weill Cornell Medical College 3300014624 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.97 17810516 22584 11 0 19 0 SRX822234 0.0 Metagenome 3300012910 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2 DOE Joint Genome Institute (JGI) 3300012910 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 732888903 1825336 709 52 1398 92 SRX3298524 Unrestricted 4.24 Metagenome 3300029043 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 26_M Beijing Genomics Institute (BGI) 3300029043 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 111021975 147128 93 0 139 0 ERX491050 0.0 Metagenome 3300009509 *Microbiome Permanent Draft Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_11 Beijing Novogene Bioinformatics Technology Co., Ltd 3300009509 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes limeng848@gmail.com Guaymas sediment, MENG LI No Environmental Aquatic Intertidal zone Marine Mangrove sediment Mangrove sediment 22.498889 114.045833 2934262478 4900897 1700 8 3303 8 0.0 Metagenome 3300001634 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF011 DOE Joint Genome Institute (JGI) 3300001634 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 30356189 85945 31 0 52 4 SRX2014340 Unrestricted 0.0 Metagenome 3300046496 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvCe-F(3) 10-14 DOE Joint Genome Institute (JGI) 3300046496 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3547 19.0434 131363426 220725 97 4 149 4 Restricted 15.76 Metagenome 3300025815 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025815 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 317314331 674904 173 11 235 16 SRX2858390, SRX6754041 Unrestricted 0.0 Metagenome 3300009391 *Microbiome Permanent Draft Anaerobic oil degrading microbial communities from River Tyne estuarine sediment Microbial communities from sediment of the River Tyne Estuary, UK - Pasteurized_686d_1 SPAdes University of Liverpool 3300009391 Metagenome Analysis SPAdes released per JGI data release policy No Yes ian.head@ncl.ac.uk, ian.head@ncl.ac.uk; ana.suarez-suarez@ncl.ac.uk Ian Head, Ian Head; Ana Suarez-Suarez No Environmental Aquatic Unclassified Sediment Unclassified sediment 54.9632021 -1.6348029 156680471 328810 89 1 146 1 0.0 Metagenome 3300034151 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17 DOE Joint Genome Institute (JGI) 3300034151 Metagenome Analysis metaspades v. 3.13.0 Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Aquatic Sediment Floodplain Unclassified sediment 38.9229 -106.9499 668007686 1711680 563 12 948 18 SRX7631457 Unrestricted 6.57 Metagenome 3300039744 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_003-M-20170627-COMP-DNA1 Battelle Memorial Institute 3300039744 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 40489438 95134 83 7 166 6 0.0 Metagenome 3300002919 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic Ocean affecting the dissolved organic carbon pool Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Bottom_A/KNORR_S2/LV DOE Joint Genome Institute (JGI) 3300002919 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -37.9728 -44.9905 230126467 480851 230 11 463 13 SRX2566748 Unrestricted 0.0 Metagenome 3300042088 *Microbiome Permanent Draft Sediment microbial communities from Haima cold seep, South China Sea, China Sediment microbial communities from Haima cold seep, South China Sea, China - SY72.4.7_BG Shanghai Majorbio Bio-pharm Technology Co. 3300042088 Metagenome Analysis IDBA v. 1.1.3 released by JGI data releasing policy No Yes sulei@tongji.edu.cn Lei Su No Environmental Aquatic Cold seeps Marine Sediment Sediment 16.732501 110.461399 .12 to .14 163164226 199396 70 1 86 0 0.0 Metagenome 3300049734 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P35SSC1_191108_c DOE Joint Genome Institute (JGI) 3300049734 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 1447391344 2198248 448 0 698 2 SRX20650590 Unrestricted 0.0 Metagenome 3300003991 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqB_D1 DOE Joint Genome Institute (JGI) 3300003991 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.197227 -122.010124 660321903 2021282 870 14 1756 28 SRX7225233 Unrestricted 0.0 Metagenome 3300012896 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2 DOE Joint Genome Institute (JGI) 3300012896 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 557766700 1453894 592 45 1239 99 SRX3298525 Unrestricted 3.77 Metagenome 3300003607 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypoxic/sulfidic aquatic microbial communities from Monarch Geyser, Yellowstone National Park, USA - MG v2 (version 4) DOE Joint Genome Institute (JGI) 3300003607 Metagenome Analysis released based on JGI ITS Yes Yes jim.fredrickson@pnnl.gov, jim.fredrickson@pnnl.gov; binskeep@montana.edu Jim Fredrickson, Jim Fredrickson; William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hypoxic/sulfidic aquatic 44.376 -110.69 77361521 155140 31 1 48 1 SRX2553563 Unrestricted 0.0 Metagenome 3300003488 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DN DOE Joint Genome Institute (JGI) 3300003488 Metagenome Analysis Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 63754011 181328 110 6 198 12 Unrestricted 0.0 Metagenome 3300020172 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erken, Sweden Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1 SciLifeLab 3300020172 Metagenome Analysis megahit v. 1.0.3 released per PI No Yes rhiannon.mondav@gmail.com Rhiannon Mondav No Environmental Aquatic Lake Freshwater Unclassified Freshwater 59.83763399 18.6203826 1023001312 2132867 648 144 987 238 0.0 Metagenome 3300001158 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_O1 DOE Joint Genome Institute (JGI) 3300001158 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 2069778 6304 107 44 174 60 SRX3311913 Unrestricted 0.0 Metagenome 3300026450 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - P.F.S.T25 DOE Joint Genome Institute (JGI) 3300026450 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 147364370 345872 191 11 335 20 SRX4550135, SRX19336181 Unrestricted 0.0 Metagenome 7000000042 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2 of subject 158883629 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000042 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 95607079 180293 0 0 0 0 0.0 Metagenome 3300011732 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway plastic -P01360 Weill Cornell Medical College 3300011732 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Plastic surface city subway plastic 40.85 -73.82 4561914 8645 12 1 14 5 SRX823300 0.0 Metagenome 3300008710 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 550534656 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008710 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 12333450 24090 10 4 9 4 SRX098551, SRX024908 0.0 Metagenome 3300070229 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_044-M-20180724-COMP-DNA1 3300070229 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 104503695 281068 134 5 249 12 0.0 Metagenome 3300006492 *Microbiome Permanent Draft Microbial assemblages from M. leidyi gut Summer M. leidyi microbial assemblages Auburn University 3300006492 Metagenome Analysis CLC 8.0.1 released per JGI data release policy No Yes mossant@auburn.edu Anthony Moss No Host-associated Invertebrates Unclassified Ctenophora Unclassified Gut -88.083318 30.234331 42411657 142067 4 7 9 12 0.0 Metagenome 3300023024 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-209 DOE Joint Genome Institute (JGI) 3300023024 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Unclassified Plant litter Unclassified leaf litter 40.2526 -123.026 80449751 150150 26 32 28 33 SRX4392061 Unrestricted 50.61 Metagenome 3300064256 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Abby Road, Pacific Northwest, WA, USA - ABBY_001-M-20170607-COMP-DNA1 re-annotation Battelle Memorial Institute 3300064256 Metagenome Analysis metaSPAdes v. 3.15.1 imported from NMDC Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.76243 -122.33033 23579419 71026 56 3 97 10 0.0 Metagenome 3300047378 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_170503.NP2 DOE Joint Genome Institute (JGI) 3300047378 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 434663771 839420 265 18 387 33 Unrestricted 16.5 Metagenome 3300047633 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA108-CHU DOE Joint Genome Institute (JGI) 3300047633 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6365 -83.4956 353299826 938894 316 13 582 27 Unrestricted 7.67 Metagenome 3300009160 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG DOE Joint Genome Institute (JGI) 3300009160 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh Yes 29921005 Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 48.2311 -71.2508 1116931419 2154938 708 103 1238 185 SRX2996489 Unrestricted 0.0 Metagenome 3300048544 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - Jacob246 DOE Joint Genome Institute (JGI) 3300048544 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Sand Soil Desert sand -78.0442 163.9537 342093911 709038 284 15 527 17 Unrestricted 0.0 Metagenome 3300055557 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.17C.11 SIP fraction DOE Joint Genome Institute (JGI) 3300055557 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 185745867 344111 94 8 142 11 Unrestricted 16.18 Metagenome 3300025426 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jul09 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025426 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 158507709 319613 105 31 141 50 SRX2565198 Unrestricted 0.0 Metagenome 3300070909 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_084-O-20190830-COMP-DNA1 3300070909 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 9075049 29101 47 13 76 16 0.0 Metagenome 3300018719 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - late stage, 49.5 hrs after wetting v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018719 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 173516720 313901 236 24 374 28 0.0 Metagenome 3300050006 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume viral communities from North Pacific Ocean - CTD-AT42-06-005-500m-0.03 v DOE Joint Genome Institute (JGI) 3300050006 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 8.41285 -104.4194 336747254 818785 247 15 459 21 Restricted 74.27 Metagenome 3300026261 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV61 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026261 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 354445811 706940 268 1 397 0 SRX2782345 Unrestricted 0.0 Metagenome 3300005430 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69 DOE Joint Genome Institute (JGI) 3300005430 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes frank.stewart@biology.gatech.edu Frank Stewart Yes 27487207 Environmental Aquatic Oceanic Marine Unclassified Marine 861899851 2135545 843 41 1359 57 SRX1877464 Unrestricted 0.0 Metagenome 3300055385 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.19C.16 SIP fraction DOE Joint Genome Institute (JGI) 3300055385 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 172904081 298237 111 24 170 39 Unrestricted 11.87 Metagenome 3300009482 *Microbiome Permanent Draft Host-associated microbial communities of aphids from plants in several locations around USA Microbial communities of aphids from from Chrysanthemum sp. in New Haven, CT, USA - Macrosiphoniella sanborni NM102210_03 seqcov University of Texas, Austin 3300009482 Metagenome Analysis CLC Genomics released per JGI data release policy Yes Yes becky.chong@utexas.edu Rebecca Chong No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Chrysanthemum 41.257945 -72.989398 202640506 113401 1 2 1 4 0.0 Metagenome 3300056641 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.16C.7 SIP fraction DOE Joint Genome Institute (JGI) 3300056641 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 275041027 508379 157 18 241 33 Unrestricted 21.32 Metagenome 3300001393 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Oil sands microbial communities from Horse River, Alberta, Canada - outcrops collected from inside the river McGill University 3300001393 Metagenome Analysis released per user request No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Environmental Terrestrial Sand Soil Oil-contaminated Hydrocarbon resource environments 56.70268 -111.394976 11319761 17164 10 0 14 0 0.0 Metagenome 3300026534 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in the Atlantic and Pacific Ocean Hydrothermal vent microbial communities from Mid Atlantic Ridge, Atlantic Ocean - 356-308 DOE Joint Genome Institute (JGI) 3300026534 Metagenome Analysis spades v. 3.11.1 Yes Yes pgirguis@oeb.harvard.edu Peter Girguis No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent 37.2904 -32.2765 665474504 1170547 541 5 776 10 SRX4801609 Unrestricted 18.61 Metagenome 3300000630 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 04OCT2008 epilimnion DOE Joint Genome Institute (JGI) 3300000630 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300021961 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D DOE Joint Genome Institute (JGI) 3300021961 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Unclassified Marine Unclassified Estuarine water 38.0516 -121.88 1375276858 2863085 552 89 890 146 SRX4051814 Unrestricted 17.57 Metagenome 3300040502 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_005-M-20160718-COMP-DNA1 Battelle Memorial Institute 3300040502 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 3471009 11418 41 3 84 9 0.0 Metagenome 3300031954 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031954 Metagenome Analysis spades v. 3.12.0 Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Unclassified Soil 18.321 -65.8172 5263385532 11043860 1302 46 2242 86 SRX5337889, SRX3604458 Unrestricted 0.0 Metagenome 3300052666 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Photosynthetic mat viral communities from Octopus Spring, YNP, Wyoming, United States - OS20060914 OS-M3 DOE Joint Genome Institute (JGI) 3300052666 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.53408 -110.7979 32199158 51975 24 0 32 0 Unrestricted 0.0 Metagenome 3300002552 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Cornitermes sp. P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Co191P1 DOE Joint Genome Institute (JGI) 3300002552 Metagenome Analysis Yes Yes karen.rossmassler@gmail.com, brune@mpi-marburg.mpg.de Karen Rossmassler, Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 5.0626 -53.0462 1534458334 3383190 633 34 1289 56 SRX3327885 Unrestricted 0.0 Metagenome 3300007976 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764447348 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007976 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 144596637 186447 93 0 121 0 0.0 Metagenome 3300022590 *Microbiome Permanent Draft Human saliva microbial communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva microbial communities from oral cavities of IgA immunodeficiency people from Alicante, Spain - individual 6 Autonomous University of Barcelona 3300022590 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.38 -0.51 71923080 85731 66 0 59 0 0.0 Metagenome 3300007731 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Dobu ""bubble"", co3ds 200bp-25jan2016" University of New South Wales 3300007731 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Coelocarteria singaporensis (marine sponge) -9.73665 150.867667 9655140 21556 7 2 14 6 0.0 Metagenome 3300042780 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_10_18 NMDC pilot DOE Joint Genome Institute (JGI) 3300042780 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 33066805 45301 45 0 50 1 SRX2924398 0.0 Metagenome 3300070735 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_005-M-20190731-COMP-DNA1 3300070735 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 14260759 43694 51 14 71 23 0.0 Metagenome 2236876007 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Marine microbial communities from Columbia River, CM, sample from Cape Meares, GS311-0p1-Deep1200 University of South Carolina 2236876007 Metagenome Analysis No Yes mariyasmit@hotmail.com Mariya Smit, Mariya W. Smit No Environmental Aquatic Intertidal zone Marine Unclassified Marine estuarine 45.483 -124.918 234031313 736730 482 10 799 6 0.0 Metagenome 3300005554 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_12_30cm DOE Joint Genome Institute (JGI) 3300005554 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2250798092 6531778 2219 53 3808 86 SRX2727597 Unrestricted 0.0 Metagenome 3300010166 *Microbiome Permanent Draft Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27 DOE Joint Genome Institute (JGI) 3300010166 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes klgravuer@ucdavis.edu Kelly Gravuer No Environmental Terrestrial Grasslands Soil Unclassified Serpentine soil 38.8692 -122.4282 2723225060 5975775 1819 17 3214 52 SRX2525418 Unrestricted 0.0 Metagenome 3300015357 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG DOE Joint Genome Institute (JGI) 3300015357 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 757135685 1854841 683 25 1313 40 SRX3047936 Unrestricted 0.0 Metagenome 3300039668 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_003-M-20170710-COMP-DNA1 Battelle Memorial Institute 3300039668 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 57227697 150318 87 12 150 14 0.0 Metagenome 3300027015 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and E1 (2) (SPAdes) DOE Joint Genome Institute (JGI) 3300027015 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 75915065 109347 51 0 59 0 SRX3311655 Unrestricted 0.0 Metagenome 3300027948 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N3_50_60 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027948 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37379502 -119.2722385 93676702 267373 203 8 397 9 SRX2523196 Unrestricted 0.0 Metagenome 3300000934 *Microbiome Permanent Draft Sinkhole freshwater microbial communities from Lake Huron, US Sinkhole freshwater microbial communities from Lake Huron, USA - r2gDNA Day1 University of Michigan 3300000934 Metagenome Analysis released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Sinkhole Freshwater Unclassified Sinkhole freshwater 45.19843 -83.32721 24002010 46144 36 7 35 16 0.0 Metagenome 3300030406 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_056 - TARA_R100000353 CEA Genoscope 3300030406 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -15.3424 43.2965 319720572 670719 28 0 47 0 0.0 Metagenome 3300028592 *Microbiome Permanent Draft Soil microbial communities from agricultural site in Penn Yan, New York, United States Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30 DOE Joint Genome Institute (JGI) 3300028592 Metagenome Analysis spades v. 3.11.1 Yes Yes dbuckley@cornell.edu Dan Buckley No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.673 -77.032 4162647946 10645367 1716 102 3007 189 SRX5246693 Unrestricted 15.56 Metagenome 3300044761 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_6 DOE Joint Genome Institute (JGI) 3300044761 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 877156881 2190014 753 21 1371 30 Unrestricted 8.04 Metagenome 3300043073 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - WH_101317 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043073 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.8725 -89.3578 6182562 18430 47 8 75 16 SRX9382428 Unrestricted 32.61 Metagenome 3300003881 *Microbiome Permanent Draft Plastic marine debris microbial communities from the Atlantic Ocean Plastic marine debris microbial communities from the Atlantic Ocean - SEA_0029_20120518_metagen Marine Biological Laboratory 3300003881 Metagenome Analysis CLC workbench 7 released per JGI data release policy No Yes amaral@mbl.edu Linda Amaral-Zettler No Environmental Aquatic Oceanic Marine Unclassified marine 27.32333 -63.565 261815401 532104 116 17 200 41 0.0 Metagenome 3300031650 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-150 DOE Joint Genome Institute (JGI) 3300031650 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh sediment 42.722 -70.847 512016121 893980 446 3 668 7 SRX6458652 Unrestricted 15.66 Metagenome 3300012986 *Microbiome Permanent Draft Amended soil microbial communities from New York, USA to study carbon cycling Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG DOE Joint Genome Institute (JGI) 3300012986 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes twhitman@wisc.edu Thea Whitman No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.4531 -76.3842 2567196487 5847568 2431 101 4150 174 SRX3566526 Unrestricted 5.39 Metagenome 3300060365 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210614_18_05 DOE Joint Genome Institute (JGI) 3300060365 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 528647352 752847 213 164 287 223 Unrestricted 27.88 Metagenome 3300027068 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N2_50_60 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027068 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380273 -119.2723038 127001410 330164 194 3 400 6 SRX2523173 Unrestricted 0.0 Metagenome 2124908029 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active Layer A2 v1 DOE Joint Genome Institute (JGI) 2124908029 Metagenome Analysis Velvet released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 20587055 31345 19 2 38 0 Unrestricted 0.0 Metagenome 3300021133 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 09AUG2007 epilimnion DOE Joint Genome Institute (JGI) 3300021133 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 107027456 243461 69 12 128 16 Unrestricted 0.0 Metagenome 3300045540 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mississippi River, Illinois, USA - NASQAN2010_127 DOE Joint Genome Institute (JGI) 3300045540 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9511 -90.3712 434198374 1112808 586 142 950 217 Unrestricted 0.0 Metagenome 3300043185 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from California, United States - Warm Spring A (WSA_S4) (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043185 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified Desert spring 37.2656 -118.2713 7.62 919510793 1326894 337 11 579 20 SRX9470712 Unrestricted 35.85 Metagenome 3300069556 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - NIWO_001-O-20160830-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069556 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.05425 -105.58237 16416606 44570 50 6 100 17 0.0 Metagenome 3300008434 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 160319967 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008434 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 9023866 20494 13 0 25 3 SRX022938, SRX022939 0.0 Metagenome 3300013140 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100737 University of Pennsylvania 3300013140 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8154810 15698 13 2 22 3 SRX756113 0.0 Metagenome 3300002712 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A3a-12 DOE Joint Genome Institute (JGI) 3300002712 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 604965 2033 23 3 46 4 SRX1991224 Unrestricted 0.0 Metagenome 3300024307 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Colum_RepC_8d DOE Joint Genome Institute (JGI) 3300024307 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 96782793 214751 110 9 183 20 SRX4547499 Unrestricted 13.58 Metagenome 3300002278 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002278 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 25727724 64786 37 3 70 6 SRX1989921 Unrestricted 0.0 Metagenome 3300005714 *Microbiome Permanent Draft Wild Panda gut microbial communities from Shaanxi, China Wild Panda gut microbiome from Saanxi China, sample from individual w1 Beijing Genomics Institute (BGI) 3300005714 Metagenome Analysis SOAPdenovo assembler No Yes ribozyme@ioz.ac.cn Wu Qi Yes 22006317 Host-associated Mammals Large intestine Digestive system Fecal Wild Panda gut 33.963333 107.618056 6853585 8910 5 2 10 4 0.0 Metagenome 3300007857 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 158742018 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007857 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 7960035 12739 12 0 25 0 0.0 Metagenome 3300042629 *Microbiome Draft Microbial community shotgun study from Ayvalik Saltern, Turkey Non-marine hypersaline microbial communities of Ayvalik Saltern, Turkey - 1k spades_assembly Macrogen Inc 3300042629 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy No Yes albayrakece@gmail.com ece albayrak No Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Unclassified Non-marine hypersaline water 39.3192 26.6924 1131843525 2494588 240 8 585 11 0.0 Metagenome 3300027893 *Microbiome Permanent Draft Marine sediment microbial communities from White Oak River estuary, North Carolina Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-52-54 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027893 Metagenome Analysis spades v. 3.11.1 Yes Yes acidophile@gmail.com Brett Baker Yes 26824177 Environmental Aquatic Intertidal zone Marine Estuary: Microbial mat Marine sediment 34.6478111 -77.1112083 2405770886 4638423 1235 2 2066 14 SRX2554361 Unrestricted 0.0 Metagenome 3300039103 *Microbiome Permanent Draft Marine microbial communities from mesoscale eddies in Eastern Mediterranean Sea Marine microbial communities from mesoscale eddies in Eastern Mediterranean Sea - G6 Haifa University- The Leon H. Charney School of Marine Sciences 3300039103 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Oceanic Marine Photic zone Marine 32.9051 34.4807 132778988 308155 130 11 328 14 0.0 Metagenome 3300026790 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized -NN607 (SPAdes) DOE Joint Genome Institute (JGI) 3300026790 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 29677696 88503 82 2 168 9 SRX3311856 Unrestricted 0.0 Metagenome 3300028412 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 2 #698 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028412 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 160574556 308108 161 31 256 48 SRX3296315 Unrestricted 0.0 Metagenome 3300006752 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG DOE Joint Genome Institute (JGI) 3300006752 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.509 -76.198 402592121 920246 42 0 50 0 SRX2927601 Unrestricted 0.0 Metagenome 3300036773 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in California, United States - CAC_1 DOE Joint Genome Institute (JGI) 3300036773 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil 35.5 -121.0 1822897467 3020710 494 116 856 143 SRX8383667 Unrestricted 13.75 Metagenome 3300022734 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU3 DOE Joint Genome Institute (JGI) 3300022734 Metagenome Analysis spades v. 3.11.1-check Yes Yes baldrian@biomed.cas.cz; kostelecke.uzeniny@seznam.cz Petr Baldrian; Tomas Vetrovsky No Host-associated Plants Rhizosphere Roots Unclassified rhizosphere 49.0431 13.617 39914581 102626 55 13 110 28 SRX4456675 Unrestricted 9.53 Metagenome 3300037562 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 10-14 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037562 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0474 793860103 1345178 269 7 393 16 SRX4415363, SRX8658334 Unrestricted 0.0 Metagenome 3300024995 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG09_land_8/20/14_0.10 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300024995 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 301916797 588749 479 6 743 26 SRX3348153 Unrestricted 0.0 Metagenome 3300024420 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 40D DOE Joint Genome Institute (JGI) 3300024420 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 324223876 777100 283 66 363 123 SRX4460421 Unrestricted 14.38 Metagenome 3300049246 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB30 DOE Joint Genome Institute (JGI) 3300049246 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 180001190 454614 435 16 906 20 Unrestricted 17.81 Metagenome 3300025732 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025732 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 477443068 1102073 302 50 516 73 SRX2857879 Unrestricted 0.0 Metagenome 3300037870 *Microbiome Permanent Draft Seawater and sediment microbial communities from various locations Seawater microbial communities from eastern tropical North Pacific Ocean - AMALJGI-DNA-20 DOE Joint Genome Institute (JGI) 3300037870 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bbw@princeton.edu Bess Ward No Environmental Aquatic Oceanic Marine Unclassified seawater 16.0 -105.0 432773985 939031 426 77 628 103 SRX9401371 Unrestricted 13.1 Metagenome 3300003443 *Microbiome Permanent Draft Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S3-DC01C 3300003443 Metagenome Analysis released per JGI data releasing policy No Yes julie.champagne@cnrc-nrc.gc.ca Julie Champagne No Environmental Aquatic Neritic zone/Coastal water Marine Sediment Marine sediment 53.6667 -129.1333 15890956 64144 25 0 48 0 0.0 Metagenome 3300007116 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina ""bubble"" site, waterEBis3" University of New South Wales 3300007116 Metagenome Analysis IDBA-UD released by Emmanuelle BOTTE Yes Yes n.webster@aims.gov.au Nicole Webster No Environmental Aquatic Volcanic Marine Unclassified Volcanic CO2 seep seawater -9.8241 150.825833 165045629 402725 198 2 349 8 0.0 Metagenome 3300032033 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M2 DOE Joint Genome Institute (JGI) 3300032033 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5341 -110.798 255813910 614398 123 0 197 0 SRX6411429 Unrestricted 178.57 Metagenome 3300026074 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_AAIW_ad_750m_LV_A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026074 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -0.015038 -22.962334 275513798 650485 323 16 533 17 SRX2719456 Unrestricted 0.0 Metagenome 3300021439 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03 DOE Joint Genome Institute (JGI) 3300021439 Metagenome Analysis spades v. 3.11.1-check Yes Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Environmental Terrestrial Grasslands Soil Bulk soil bulk soil -19.28 -43.5919 616994360 1596504 533 54 1031 115 SRX4020417 Unrestricted 8.87 Metagenome 3300028121 *Microbiome Permanent Draft Extreme environments viral communities from various locations Cryopeg brine viral communities from Beaufort Sea near Barrow, Alaska, United States - CBIW DOE Joint Genome Institute (JGI) 3300028121 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Coastal Marine Unclassified cryopeg brine 71.2944 -156.7154 16890292 33819 7 5 11 9 SRX5248023 Unrestricted 506.44 Metagenome 3300004108 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 0.8 um filter (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300004108 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu, jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield, Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 480564897 1167446 902 40 1624 71 SRX2770555 Unrestricted 0.0 Metagenome 3300000285 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM251 Beijing Genomics Institute (BGI), Macrogen 3300000285 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 67176415 84916 381 3 574 3 0.0 Metagenome 3300029780 *Microbiome Permanent Draft Human fecal microbial communities from healthy and liver cirrhosis patients in Hangzhou, China Human fecal microbial communities from healthy subjects in Hangzhou, China - HD-40_Run3 Zhejiang University 3300029780 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 30.0 120.0 203563836 294400 154 0 232 0 0.0 Metagenome 3300057123 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2021-2018 DOE Joint Genome Institute (JGI) 3300057123 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.7269 -83.42329 1427644080 2853763 791 163 1249 246 Unrestricted 26.79 Metagenome 3300049590 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 DOE Joint Genome Institute (JGI) 3300049590 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.407926 -82.180036 1442231462 2396739 574 19 1029 30 Unrestricted 14.54 Metagenome 3300030081 *Microbiome Permanent Draft Human fecal microbial communities from healthy and liver cirrhosis patients in Hangzhou, China Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LV25_Run3 Zhejiang University 3300030081 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 30.0 120.0 6982941 10930 16 0 18 0 0.0 Metagenome 3300040249 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_008-M-20160730-COMP-DNA1 Battelle Memorial Institute 3300040249 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 6924618 20637 66 6 127 11 0.0 Metagenome 3300038577 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark - 1617-PRJ1066-RL-Sewage-49_S16 Technical University of Denmark 3300038577 Metagenome Analysis Yes Yes No Engineered Wastewater Unclassified Sewage Unclassified Sewage 55.694986 12.615026 13204278 27895 68 1 105 0 ERX1596352 0.0 Metagenome 3300045028 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Plains ecozone, Canada - Lake 04-583 Genome Quebec 3300045028 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 67.442962 -134.511877 1290088431 3037399 645 118 975 204 0.0 Metagenome 3300014682 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00325 Weill Cornell Medical College 3300014682 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.79 -73.96 35220655 58188 21 0 29 0 SRX822298 0.0 Metagenome 3300035379 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada -18E_3c_10_8 mgh University of Alberta 3300035379 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified wastewater 56.7292 -111.3885 47491111 63808 36 0 44 0 0.0 Metagenome 3300005804 *Microbiome Permanent Draft Microbial degradation of dichloromethane (DCM) Freshwater sediment microbial communities from Rio Mameyes, Puerto Rico - dichloromethane (DCM) enrichment University of Tennessee 3300005804 Metagenome Analysis Newbler released per JGI data release policy No Yes skleindi@utk.edu, sara.kleindienst@uni-tuebingen.de Sara Kleindienst No Environmental Aquatic Sediment Freshwater Unclassified sediment 18.21439 -65.461 142442212 159953 68 1 82 1 0.0 Metagenome 3300002802 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G05K4-12 DOE Joint Genome Institute (JGI) 3300002802 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 331999 1136 23 0 30 1 SRX1991289 Unrestricted 0.0 Metagenome 3300041846 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_278 MetaG AgResearch, New Zealand, Mosgeil 3300041846 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 2165865084 4273235 388 21 1282 38 0.0 Metagenome 3300054042 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_17_100 re-annotation DOE Joint Genome Institute (JGI) 3300054042 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 336628912 619819 189 0 321 0 SRX3005977 0.0 Metagenome 3300046364 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_19 DOE Joint Genome Institute (JGI) 3300046364 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9703 -106.997 162040912 429187 700 119 1365 191 Restricted 0.0 Metagenome 3300021357 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater microbial communities from subterranean cave lake in Wind Cave National Park, South Dakota, United States - WICALVC2017 DOE Joint Genome Institute (JGI) 3300021357 Metagenome Analysis spades v. 3.11.1-check Yes Yes rstepanauskas@bigelow.org; bartonh@uakron.edu Ramunas Stepanauskas; Hazel Barton No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.5566 -103.4781 527448849 1216183 942 9 1680 47 SRX4010504 Unrestricted 26.96 Metagenome 3300027983 *Microbiome Permanent Draft Freshwater microbial communities from lake liftoff mats and glacier meltwater in Antarctica Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-03 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027983 Metagenome Analysis spades v. 3.11.1 Yes Yes slonczewski@kenyon.edu Joan Slonczewski No Environmental Aquatic Ice Freshwater Glacier meltwater Freshwater -77.605 163.163 1169279935 1933587 254 77 329 93 SRX2522452 Unrestricted 0.0 Metagenome 3300032141 *Microbiome Permanent Draft Deep subsurface sediment microbial communities from Tonga Trench, Pacific Ocean Deep subsurface sediment microbial communities from Tonga Trench, Pacific Ocean - 60_70 re-sequenced with NextSeq Marine Biological Laboratory 3300032141 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Sediment Geologic Unclassified Deep subsurface sediment -16.64175 -172.200017 1954502 7405 10 3 10 4 SRX2056175, SRX2056176 0.0 Metagenome 3300043533 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield ecozone, Canada - Lake 06-261 Genome Quebec 3300043533 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 47.399879 -53.047262 891069930 2072882 399 129 652 252 0.0 Metagenome 3300044619 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME29Jul2013-rr0963 DOE Joint Genome Institute (JGI) 3300044619 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1233029948 1867445 455 66 612 72 Unrestricted 17.13 Metagenome 3300041003 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Tassie Lake, Antarctica - #7 Australian Centre for Ecogenomics 3300041003 Metagenome Analysis Spades v. 3.13.0 released by Michelle Allen No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.541933 78.21325 252558399 518248 191 18 314 41 0.0 Metagenome 3300032214 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada - Lake 06-141 Genome Quebec 3300032214 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.214755 -79.052164 562249015 1158960 356 96 570 187 0.0 Metagenome 3300041795 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - C_29_wk_3 DOE Joint Genome Institute (JGI) 3300041795 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9346 -107.011 204673438 572259 284 17 503 22 SRX14808354 Unrestricted 7.75 Metagenome 3300021585 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - E2014-0066-100-LTR University of Michigan 3300021585 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified freshwater lake 41.704967 -83.256283 194641990 340727 89 71 158 133 0.0 Metagenome 3300044546 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME24May2015-rr0911 DOE Joint Genome Institute (JGI) 3300044546 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 784026968 1168112 297 67 405 75 Unrestricted 17.79 Metagenome 3300035212 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28May2014-rr0066 DOE Joint Genome Institute (JGI) 3300035212 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1298588008 2548392 497 84 750 137 SRX7710008 Unrestricted 10.79 Metagenome 3300007507 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila suzukii male 4 gut Cornell University 3300007507 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy Yes Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila suzukii male adult gut 42.875296 -77.006403 452503706 492704 25 13 25 31 0.0 Metagenome 3300022410 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1OPP2 JM59 AGRF 3300022410 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 51571195 83739 35 1 54 1 0.0 Metagenome 3300050481 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - W3W8 DOE Joint Genome Institute (JGI) 3300050481 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 150973541 277326 208 42 358 59 Unrestricted 14.97 Metagenome 3300027291 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Colum_RepB_8d DOE Joint Genome Institute (JGI) 3300027291 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 149224440 266876 101 10 121 9 SRX5245322 Unrestricted 18.7 Metagenome 3300007004 *Microbiome Permanent Draft Agricultural soil microbial communities from Utah and Georgia to study Nitrogen management Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost DOE Joint Genome Institute (JGI) 3300007004 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jeanette.norton@usu.edu Jeanette Norton No Environmental Terrestrial Agricultural land Soil Unclassified Agricultural soil 41.7655 -111.8143 4918595864 11245631 4880 255 8317 366 SRX2923138 Unrestricted 0.0 Metagenome 3300028639 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N1_2 DOE Joint Genome Institute (JGI) 3300028639 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 205041423 527262 414 72 692 119 SRX5281740 Unrestricted 0.0 Metagenome 3300006959 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 2, subject 15961191 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300006959 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 8987590 16641 5 1 8 11 SRX023317, SRX023316 0.0 Metagenome 2170459010 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!) 454 Life Sciences 2170459010 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.804241 -0.372114 385492733 1039757 220 36 354 61 0.0 Metagenome 3300039027 *Microbiome Permanent Draft Lab enriched sediment microbial communities from Lake Superior, Michigan and Burr Oak Reservoir, Ohio, USA Lab enriched sediment microbial communities from Burr Oak Reservoir, Ohio, USA - BO4 Miami University 3300039027 Metagenome Analysis metaSPAdes v. 3.13 released per PI No Yes bollmaa@miamioh.edu Annette Bollmann No Environmental Aquatic Reservoir Freshwater Sediment Sediment 39.5264 -82.0444 22711121 25380 4 1 5 1 0.0 Metagenome 3300014755 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 622_12M Beijing Genomics Institute (BGI) 3300014755 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 110222635 130037 62 0 87 0 ERX491271 0.0 Metagenome 3300013262 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100242 University of Pennsylvania 3300013262 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 18055340 31180 12 1 11 0 SRX756659 0.0 Metagenome 3300000977 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY70 J. Craig Venter Institute (JCVI) 3300000977 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 859331921 2795653 106 47 305 65 0.0 Metagenome 3300027627 *Microbiome Permanent Draft Freshwater lentic microbial communities from the great Laurentian Lakes, MI, USA for biogeochemical studies Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes) DOE Joint Genome Institute (JGI) 3300027627 Metagenome Analysis spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified Freshwater lentic 44.5046 -83.045851 377934968 785649 236 9 339 16 SRX2577500 Unrestricted 0.0 Metagenome 3300015206 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river)) University of Bristol 3300015206 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.057002 -50.459694 410018759 702093 86 8 135 10 0.0 Metagenome 3300025939 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025939 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.4774 -85.451 3370442482 8527851 1611 108 2926 235 SRX2776985 Unrestricted 0.0 Metagenome 3300029716 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37228 Beijing Genomics Institute (BGI) 3300029716 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 255761910 339980 211 3 303 1 0.0 Metagenome 3300009695 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - frozenSSSS metaG DOE Joint Genome Institute (JGI) 3300009695 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca Ramunas Stepanauskas; Peter Dunfield No Environmental Aquatic Ice Freshwater Glacier Glacier valley 81.017 -81.583 1191213831 2093514 1009 112 1633 177 SRX3006940 Unrestricted 0.0 Metagenome 3300040183 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_010-M-20170627-COMP-DNA1 Battelle Memorial Institute 3300040183 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 8127293 16830 41 2 83 5 0.0 Metagenome 2044078018 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Singapore and Univ of Illinois at Urbana, that are terephthalate-degrading Wastewater bioreactor microbial communities from Singapore - Sample 371 DOE Joint Genome Institute (JGI) 2044078018 Metagenome Analysis not assembled released per Simon -- IMGSUPP2949 No Yes sgtringe@lbl.gov Susannah Tringe Yes 20686509 Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater bioreactor 1.29973 103.771791 38836406 101352 56 0 98 0 0.0 Metagenome 3300069629 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_054-M-20160823-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069629 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 89395685 261914 98 18 205 16 0.0 Metagenome 3300042131 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 DOE Joint Genome Institute (JGI) 3300042131 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.9457 -103.6985 192930302 514875 280 22 527 32 Unrestricted 7.17 Metagenome 3300057007 *Microbiome Permanent Draft Mealworm larvae gut microbial communities from Newark, Delaware, USA Mealworm larvae gut microbial communities from Newark, Delaware, USA - Gut-D30_PP_oats (version 2) DOE Joint Genome Institute (JGI) 3300057007 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes blenner@udel.edu Mark Blenner No Host-associated Arthropoda: Insects Gut Larva Unclassified Mealworm larvae gut 39.663708 -75.755838 198542237 193337 239 6 256 5 Unrestricted 0.0 Metagenome 3300024256 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_120_MG DOE Joint Genome Institute (JGI) 3300024256 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca; shallam@interchange.ubc.ca Sean Crowe; Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5847 -123.5008 463195704 868975 362 5 551 11 SRX4488679 Unrestricted 44.62 Metagenome 3300020719 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 18AUG2009 hypolimnion DOE Joint Genome Institute (JGI) 3300020719 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 113005853 238624 107 16 135 32 Unrestricted 0.0 Metagenome 3300008477 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 763496533 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008477 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 9053716 23322 10 1 22 7 SRX024919 0.0 Metagenome 3300035070 *Microbiome Finished Marine viral communities of the coast of Yellow Sea, Qingdao, China Marine viral communities of the coast of Yellow Sea, Qingdao, China - xg Ocean University of China 3300035070 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes 1054738805@qq.com Chengxiang Gu No Environmental Aquatic Unclassified Marine Unclassified marine 36.077 120.309 283688532 541079 47 1 60 2 0.0 Metagenome 3300001259 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 9JUL2008 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300001259 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 13978743 28171 29 5 40 11 SRX3308909 Unrestricted 0.0 Metagenome 3300011461 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00786 Weill Cornell Medical College 3300011461 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.8 -73.95 14754213 23655 25 0 35 0 SRX822752 0.0 Metagenome 3300050392 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BT11-02redo_D0 (version 3) DOE Joint Genome Institute (JGI) 3300050392 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3555 19.0492 444813213 830948 186 23 319 44 Restricted 0.0 Metagenome 3300046516 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere DOE Joint Genome Institute (JGI) 3300046516 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1216 -123.2695 1490139460 2394206 363 98 589 153 Unrestricted 14.73 Metagenome 3300049001 *Microbiome Permanent Draft Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA - CNF2NT3 DOE Joint Genome Institute (JGI) 3300049001 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sydneyg@ucr.edu Sydney Glassman No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 33.6953 -117.4713 2350470163 4018772 619 46 1041 81 Unrestricted 16.1 Metagenome 3300025093 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025093 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 28.867 -90.467 224076662 437020 93 2 137 2 SRX7698297 Unrestricted 0.0 Metagenome 3300023276 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_1_MG DOE Joint Genome Institute (JGI) 3300023276 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Inlet Marine Unclassified seawater 48.58 -123.5 715125747 1829802 809 126 1455 240 SRX4480222 Unrestricted 8.31 Metagenome 7000000476 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 706846339 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000476 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 8534197 15883 0 0 0 0 SRX024127 0.0 Metagenome 3300001842 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM30, ROCA_DNA203_0.2um_MCP-S_C_2b 3300001842 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Lotic Freshwater Unclassified Marine plankton -0.156917 -50.62255 109161062 254988 25 1 88 3 0.0 Metagenome 3300005341 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG DOE Joint Genome Institute (JGI) 3300005341 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 3014391022 8986338 2771 165 4899 330 SRX2740910 Unrestricted 0.0 Metagenome 3300011250 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_5, 0.2 Toyama Prefectural University 3300011250 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Unclassified marine 37.31041 137.23108 57790631 171438 30 0 63 4 0.0 Metagenome 3300031836 *Microbiome Permanent Draft Extreme environments viral communities from various locations Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - CBIW 0.2 DOE Joint Genome Institute (JGI) 3300031836 Metagenome Analysis spades v. 3.12.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Coastal Marine Unclassified cryopeg brine 71.2944 -156.7154 313518919 493344 97 1 166 5 SRX6409994 Unrestricted 152.02 Metagenome 7000000611 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159814214 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000611 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 68874072 119810 0 0 0 0 0.0 Metagenome 3300025705 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025705 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 525039776 992083 467 29 633 72 Unrestricted 0.0 Metagenome 3300026098 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3747_4435 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026098 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic 8.2514 -49.9993 46695928 79354 31 3 31 8 SRX2753931 Unrestricted 0.0 Metagenome 3300042806 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Fresh water microbial communities from Ohio, USA - Utica-2 Time Series HT 2014_7_11 NMDC pilot DOE Joint Genome Institute (JGI) 3300042806 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Water tank Freshwater Unclassified Fresh water 40.178 -81.073 5.8 394741672 791150 259 84 448 137 SRX2925263 0.0 Metagenome 3300000856 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 47 DOE Joint Genome Institute (JGI) 3300000856 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 4127475 13318 17 0 29 0 SRX1985059 Unrestricted 0.0 Metagenome 3300049777 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G24_A_5_control DOE Joint Genome Institute (JGI) 3300049777 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 44816134 103420 153 6 302 13 Unrestricted 11.26 Metagenome 3300012170 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #899 DOE Joint Genome Institute (JGI) 3300012170 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 251362283 496094 280 36 444 55 SRX3242177 Unrestricted 0.0 Metagenome 3300023082 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L073-202C-2 DOE Joint Genome Institute (JGI) 3300023082 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 436103727 901049 372 78 595 149 SRX4797470 Unrestricted 17.62 Metagenome 3300003248 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06K5-12 DOE Joint Genome Institute (JGI) 3300003248 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 194078 635 29 3 44 4 SRX2576209 Unrestricted 0.0 Metagenome 3300050670 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_3A1_100218_0210 DOE Joint Genome Institute (JGI) 3300050670 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 1114247992 1785977 409 135 651 191 Unrestricted 22.6 Metagenome 3300022486 *Microbiome Permanent Draft Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain - individual 7 Autonomous University of Barcelona 3300022486 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.38 -0.51 23689678 28123 21 0 31 0 0.0 Metagenome 3300014515 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 7_4M Beijing Genomics Institute (BGI) 3300014515 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 30299778 40664 21 0 25 0 ERX491304 0.0 Metagenome 3300038790 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-3_at_3-4_cm Genome Quebec 3300038790 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89934 -73.72822 385758779 1021485 586 12 1238 31 0.0 Metagenome 3300061133 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIF4SW PMA-treated Jet Propulsion Laboratory, California Institute of Technology 3300061133 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 45874609 79401 14 3 16 8 SRX3808543, SRX2249356, SRX3808516, SRX2249359 0.0 Metagenome 3300017448 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPADES assembly) (version 2) DOE Joint Genome Institute (JGI) 3300017448 Metagenome Analysis MEGAHIT v. 1.0.3 released per Miranda Yes Yes rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca Ramunas Stepanauskas; Peter Dunfield No Environmental Aquatic Hot (42-90C) Thermal springs Acidic iron-sulfur acid spring 51.1699 -116.1578 4.19 1411343834 2543380 400 36 789 51 SRX2838986 Unrestricted 0.0 Metagenome 3300028773 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2 DOE Joint Genome Institute (JGI) 3300028773 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 1097973484 2481274 351 25 528 47 SRX5355876 Unrestricted 0.0 Metagenome 3300002179 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Incubations 004-21A DOE Joint Genome Institute (JGI) 3300002179 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.270939 -156.810374 268783607 597209 300 0 553 1 SRX1990920 Unrestricted 0.0 Metagenome 3300070812 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_025-M-20190313-COMP-DNA1 3300070812 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 107174 391 6 0 9 0 0.0 Metagenome 3300059427 *Microbiome Permanent Draft Sorghum rhizosphere and bulk soil microbial communities from University of Arizona Maricopa Agricultural Center, AZ, USA Soil microbial communities from sorghum plot in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_20210810 DOE Joint Genome Institute (JGI) 3300059427 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Agricultural land Soil Unclassified Soil 33.07735 -111.974819 273859229 749693 526 12 910 23 Unrestricted 6.47 Metagenome 3300029556 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P073V1 Beijing Genomics Institute (BGI) 3300029556 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 175494273 197047 126 0 192 0 0.0 Metagenome 3300042043 *Microbiome Permanent Draft Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - Q_c23.1 Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042043 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1237 -89.1404 836023808 828410 2 7 5 13 SRX5234777 0.0 Metagenome 3300020559 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 07JUL2009 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020559 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 160969116 327752 131 22 209 41 SRX1987765 Unrestricted 0.0 Metagenome 3300011815 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metalplastic -P01012 Weill Cornell Medical College 3300011815 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface City subway metal/plastic 40.58 -73.82 29138423 48185 20 0 27 0 SRX822974 0.0 Metagenome 3300020365 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000034 (ERX555943-ERR599143) CEA Genoscope 3300020365 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 20.8151 63.5046 475189383 1211404 211 8 356 13 0.0 Metagenome 3300039236 *Microbiome Permanent Draft Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada - low-flow bush ECw10 Dalhousie University 3300039236 Metagenome Analysis Megahit v. 1.2.8 released by JGI data releasing policy No Yes smurdock@uvic.ca Sheryl Murdock No Environmental Aquatic Hydrothermal vents Marine Tubeworm bush tubeworm bush 47.963 -129.0915 853565760 1580976 599 19 831 30 0.0 Metagenome 3300019850 *Microbiome Permanent Draft Marine microbial communities from Tor Caldara Marine crust microbial communities from Tor Caldara shallow-water vent,Tyrrhenian Sea,Italy - TCM2 Molecular Research LP (MR DNA) 3300019850 Metagenome Analysis Megahit released by JGI data releasing policy No Yes sushmita.patwardhan@gmail.com Sushmita Patwardhan No Environmental Aquatic Hydrothermal vents Marine Unclassified Marine crust 41.48583333 12.58972222 711367554 1512179 836 25 1478 52 0.0 Metagenome 3300029088 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 1_4M Beijing Genomics Institute (BGI) 3300029088 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 61290401 64317 34 0 32 0 ERX490956 0.0 Metagenome 3300043217 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_2000m_C6_10cm15cm (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043217 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.9138 -121.159 129267711 213333 125 2 202 3 SRX9141698 Unrestricted 75.04 Metagenome 3300016654 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water reservoir in Singapore - WB_Site 7, Oct Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016654 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Lake Freshwater Unclassified freshwater 1.35 103.87 54240838 67800 7 1 9 1 0.0 Metagenome 3300020318 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B000000475 (ERX556107-ERR598973) CEA Genoscope 3300020318 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -34.8986 18.03 214396806 593059 175 8 302 21 0.0 Metagenome 3300042963 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-412 Genome Quebec 3300042963 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.388589 -100.626164 1350678256 3260868 318 74 532 155 0.0 Metagenome 3300046756 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_160622.NP1 DOE Joint Genome Institute (JGI) 3300046756 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 634708550 1252213 379 52 577 84 Unrestricted 13.22 Metagenome 3300037407 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_C1 DOE Joint Genome Institute (JGI) 3300037407 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 330964390 801611 242 26 401 46 SRX9146877 Unrestricted 5.98 Metagenome 3300055470 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.3C.15 SIP fraction DOE Joint Genome Institute (JGI) 3300055470 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 205573734 393205 170 8 262 14 Unrestricted 12.96 Metagenome 3300009424 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-08 DOE Joint Genome Institute (JGI) 3300009424 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 523557714 947258 500 32 825 45 SRX3197917 Unrestricted 0.0 Metagenome 3300011868 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00584 Weill Cornell Medical College 3300011868 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.73 -73.98 48318833 71781 23 0 33 0 SRX822551 0.0 Metagenome 3300013281 *Microbiome Permanent Draft Activated sludge bacterial and viral communities from EBPR bioreactors in Australia Activated sludge bacterial and viral communities from EBPR bioreactors in Queensland, Australia - SBR4-V91307 California Institute of Technology 3300013281 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Activated sludge -27.49999 153.01209 39649736 90595 21 2 36 3 SRX1077121 0.0 Metagenome 3300001169 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 DOE Joint Genome Institute (JGI) 3300001169 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 27909242 91738 131 42 225 84 SRX3312028 Unrestricted 0.0 Metagenome 3300046494 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvCe-F(2) 20-24 DOE Joint Genome Institute (JGI) 3300046494 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3547 19.0434 40263007 67534 44 1 74 3 Restricted 16.41 Metagenome 3300001636 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF002 DOE Joint Genome Institute (JGI) 3300001636 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 8640548 26142 25 1 57 4 SRX2014338 Unrestricted 0.0 Metagenome 3300069292 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Healy, Denali National Park, Alaska, USA - HEAL_048-O-20210622-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069292 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Terrestrial soil 63.875088 -149.210438 2765718207 5958648 863 109 1459 200 0.0 Metagenome 3300036885 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-3-D DOE Joint Genome Institute (JGI) 3300036885 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0467 511404386 976093 354 0 590 1 SRX8138059 Unrestricted 8.44 Metagenome 3300043371 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Hope, British Columbia, Canada - fraser_2019_sw_WHONDRS-S195_0001 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043371 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 49.3863 -121.4506 813133493 1319799 313 49 511 76 Unrestricted 25.92 Metagenome 3300011160 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00203 Weill Cornell Medical College 3300011160 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.57 -73.98 15769047 30018 15 0 29 0 SRX822182 0.0 Metagenome 2170459022 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - FA2 (control condition) 454 Life Sciences 2170459022 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.804241 -0.372114 314557970 871658 294 13 678 27 0.0 Metagenome 3300047575 *Microbiome Permanent Draft Floating fern leaf microbial communities from various locations Floating fern leaf microbial communities from Ekiti, Nigeria - 7501_IRRI DOE Joint Genome Institute (JGI) 3300047575 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dave.armitage@gmail.com David Armitage No Host-associated Plants Phylloplane/Leaf Phyllosphere Endophytes Leaf 7.7187 5.0567 19138865 28791 14 2 24 2 Unrestricted 1288.57 Metagenome 3300038536 *Microbiome Permanent Draft Organic and conventional farm associated microbial communities from Canada and USA Wastewater microbial communities from natural feedlot in Alberta, Canada - WW96 Colorado State University 3300038536 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 53.5 -112.06 252124653 457929 280 0 430 0 0.0 Metagenome 3300044724 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Estuarine water microbial communities from San Francisco Bay, California, United States - Oct18_FB_1_27D DOE Joint Genome Institute (JGI) 3300044724 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 37.6183 -122.2916 1047630762 1716279 311 126 439 207 Unrestricted 70.16 Metagenome 3300050507 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation DOE Joint Genome Institute (JGI) 3300050507 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Host-associated Plants Rhizosphere Roots Soil Populus rhizosphere 35.8443 -83.9607 3981556262 7845099 1465 34 2795 63 SRX2748706, SRX2748707 0.0 Metagenome 3300042430 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2015-rr0442 DOE Joint Genome Institute (JGI) 3300042430 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 941087871 1432555 243 21 331 26 Unrestricted 27.05 Metagenome 3300070485 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_040-O-20210104-COMP-DNA1 Battelle Memorial Institute 3300070485 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 19.552827 -155.319745 3.61-4 353048 1215 5 0 11 2 0.0 Metagenome 3300014626 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00443 Weill Cornell Medical College 3300014626 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.71 -73.79 12150389 17756 16 0 17 0 SRX822412 0.0 Metagenome 3300011482 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00360 Weill Cornell Medical College 3300011482 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.58 -74.09 19443039 26687 12 0 13 0 SRX822332 0.0 Metagenome 3300013152 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100285 University of Pennsylvania 3300013152 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 18906969 37325 10 2 16 4 SRX756616 0.0 Metagenome 3300041973 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego desert, Southern California, United States - 2020_S1v DOE Joint Genome Institute (JGI) 3300041973 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified Soil 33.3052 -116.2547 327832771 809840 549 24 970 31 SRX14810624 Unrestricted 9.52 Metagenome 3300029804 *Microbiome Permanent Draft Soil microbial communities from hillslopes of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-4-W_N DOE Joint Genome Institute (JGI) 3300029804 Metagenome Analysis spades v. 3.11.1 Yes Yes laurameredith@email.arizona.edu Laura Meredith No Engineered Artificial ecosystem Soil Mesocosm Unclassified soil 32.5789 -110.8512 39397789 108658 44 0 97 0 SRX5338564 Unrestricted 0.0 Metagenome 3300039895 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_060-O-20160719-COMP-DNA1 Battelle Memorial Institute 3300039895 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 22768367 65692 107 27 189 35 0.0 Metagenome 3300066282 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONZ_024-M-20160711-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066282 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.10077 -96.56309 14087150 43731 49 2 89 2 0.0 Metagenome 3300049484 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Newbury, Massachusetts, USA - cartcreek_2019_sed_WHONDRS-S19S_0073 DOE Joint Genome Institute (JGI) 3300049484 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 42.7688065 -70.9164986 432498568 1058531 779 12 1521 18 Unrestricted 8.34 Metagenome 3300028256 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_15MAY2017_LD1 DOE Joint Genome Institute (JGI) 3300028256 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 43897247 82803 6 32 9 44 SRX5345788 Unrestricted 31.86 Metagenome 3300027105 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF018 (SPAdes) DOE Joint Genome Institute (JGI) 3300027105 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 54733372 142874 42 2 74 1 SRX2014341 Unrestricted 0.0 Metagenome 3300037194 *Microbiome Permanent Draft Metagenomic SGS 2x251 Cornfield soil microbial communities from Madison, WI, USA - CF4 Illumina 3300037194 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Agricultural land Soil 43.056543 -89.477477 2167548151 5881710 746 15 1239 29 0.0 Metagenome 3300012878 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - HID1975M_E0 MG DOE Joint Genome Institute (JGI) 3300012878 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie Yes 29545786 Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 180427194 310567 199 0 269 0 SRX3564587 Unrestricted 0.0 Metagenome 3300045552 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Cordillera ecozone, Canada - Lake 13-516 Genome Quebec 3300045552 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 59.300477 -129.276001 1048026427 2282451 419 151 667 278 0.0 Metagenome 3300003457 *Microbiome Permanent Draft Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S12-DC09C 3300003457 Metagenome Analysis released per JGI data releasing policy No Yes julie.champagne@cnrc-nrc.gc.ca Julie Champagne No Environmental Aquatic Neritic zone/Coastal water Marine Sediment Marine sediment 53.6667 -129.1333 52589680 198326 76 6 142 6 0.0 Metagenome 3300023199 *Microbiome Permanent Draft Solar saltern microbial communities from the Namib Desert Sediment microbial communities from solar saltern in the Namib Desert, Gobabeb, Namibia - Hosabes source 2016 Genewiz Inc. 3300023199 Metagenome Analysis SPAdes v. 3.6.0 released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Aquatic Saline Non-marine Saline and Alkaline Microbial mats Microbial mat and sediment -23.5071111 15.07177778 832474478 1147797 254 3 362 6 0.0 Metagenome 3300001187 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from University of Liverpool IonT_500ng_assembled University of Liverpool 3300001187 Metagenome Analysis Newbler v2.8 released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 316683 1062 13 0 30 0 0.0 Metagenome 3300005780 *Microbiome Permanent Draft Human lung microbial communities from healthy (non-smokers and smokers) and HIV infected subjects Human lung microbial communities from Normal Control Background 110808-1 New York University Langone Medical Center 3300005780 Metagenome Analysis Shotgun released per JGI data release policy No Yes leopoldo.segal@nyumc.org Leopoldo N Segal No Host-associated Mammals: Human Lung Respiratory system Unclassified Lung Microbiome 40.7127 -74.0059 22251691 66262 3 5 2 0 0.0 Metagenome 3300042554 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Aug2010-rr0618 DOE Joint Genome Institute (JGI) 3300042554 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 898632193 1454011 331 34 517 53 Unrestricted 17.72 Metagenome 3300000504 *Microbiome Permanent Draft Salt marsh microbial communities from Little Sippewissett, Woods Hole, MA that are anoxygenic and photosynthetic Microbial Communities from Little Sippewissett Salt Marsh, Woods Hole, MA that are anoxygenic and photosynthetic, Marine photosynthetic community that grows at 940nm Marine Biological Laboratory 3300000504 Metagenome Analysis No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Intertidal zone Marine Salt marsh Salt Marsh 41.5758508 -70.635807 84361702 163520 51 0 105 0 0.0 Metagenome 3300047396 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Kolyma River, Sakha Republic, Russia - Kolyma 2004-2 DOE Joint Genome Institute (JGI) 3300047396 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 68.75 161.3 400371948 943875 442 92 651 174 Unrestricted 20.82 Metagenome 3300034790 *Microbiome Permanent Draft Marine microbial communities from Baffin Bay, Canada Marine microbial communities from Baffin Bay, Canada - S132_1m Genome Quebec 3300034790 Metagenome Analysis Spades v. 3.12.0 released by JGI data releasing policy Yes Yes thomas.grevesse@gmail.com Thomas Grevesse No Environmental Aquatic Oceanic Marine Photic zone marine 78.59677 -72.15558 727966416 1570800 246 157 413 271 0.0 Metagenome 3300040932 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - FS5_Glycine_3 DOE Joint Genome Institute (JGI) 3300040932 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.5324 -110.7974 107294009 183440 60 1 86 0 SRX9633562 Unrestricted 522.02 Metagenome 3300023061 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1454 DOE Joint Genome Institute (JGI) 3300023061 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 152256002 387910 96 0 190 3 SRX4414721 Unrestricted 9.36 Metagenome 3300033054 *Microbiome Permanent Draft Characterization of microbial community from aquifers in Araihazar, Bangladesh Aquifer fluids microbial communities from Pleistocene sands, Araihazar, Bangladesh - B3 Site University of Manchester 3300033054 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Terrestrial Aquifer Deep subsurface Unclassified Aquifer fluid 23.78 90.64 36375734 60839 41 1 68 1 0.0 Metagenome 2032320005 *Microbiome Draft Soil microbial communities from FACE and OTC sites in USA Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- DOE Joint Genome Institute (JGI) 2032320005 Metagenome Analysis Newbler released based on JGI ITS No Yes kuske@lanl.gov Cheryl Kuske No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.9 -84.4 157702128 401954 55 0 104 0 Unrestricted 0.0 Metagenome 3300070820 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt-Chequamegon, Wisconsin, USA - STEI_053-M-20170706-COMP-DNA1 3300070820 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 12348109 37506 38 3 68 8 0.0 Metagenome 3300026224 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Oklahoma, USA - DC3-115 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026224 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 12586879 23374 22 9 33 15 SRX2770439 Unrestricted 0.0 Metagenome 3300007888 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764487809 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007888 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 26906299 47041 22 0 37 0 0.0 Metagenome 3300035456 *Microbiome Permanent Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-10-2_at_7-8_cm Genome Quebec 3300035456 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.88147 -73.76618 791357678 1778845 496 4 975 4 0.0 Metagenome 3300000123 *Microbiome Draft Marine microbial communities from chronically polluted sediments in four geographic locations Marine microbial communities from chronically polluted sediments in Antarctica - King George Island site S2 sample ANT 06_23.45m DOE Joint Genome Institute (JGI) 3300000123 Metagenome Analysis released based on JGI ITS Yes Yes hdionisi@cenpat.edu.ar Hebe Dionisi No Environmental Aquatic Intertidal zone Marine Sediment Marine -62.231932 -58.655087 87052102 101505 15 5 21 3 Unrestricted 0.0 Metagenome 3300034074 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A4A4.1 DOE Joint Genome Institute (JGI) 3300034074 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 232542089 662825 446 4 713 8 SRX7658856 Unrestricted 6.42 Metagenome 3300002296 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 02JUN2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002296 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 34159058 85628 54 11 117 7 SRX1989773 Unrestricted 0.0 Metagenome 3300036420 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T75 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036420 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 95731828 135070 51 5 66 9 SRX4415315, SRX7705690 Unrestricted 0.0 Metagenome 3300026904 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A5-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300026904 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 36137000 117660 113 2 210 4 SRX1990515 Unrestricted 0.0 Metagenome 7000000050 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 763840445 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000050 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 1599299 1512 0 0 0 0 0.0 Metagenome 3300036995 *Microbiome Permanent Draft Soil microbial communities from a coastal freshwater wetland in North Carolina, United States Soil microbial communities from coastal freshwater wetland in North Carolina, United States - 11NFC DOE Joint Genome Institute (JGI) 3300036995 Metagenome Analysis metaspades v. 3.13.0 Yes Yes peraltaa@ecu.edu Ariane Peralta No Environmental Terrestrial Wetlands Soil Unclassified soil 35.8959 -76.1658 442805656 759090 178 8 374 9 SRX8387883 Unrestricted 13.79 Metagenome 3300027059 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - Naphthalene biodegradation metagenome 13C3doseA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027059 Metagenome Analysis spades v. 3.11.1 Yes Yes elm3@cornell.edu Eugene Madsen Yes 30051558 Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.292222 -73.604444 56900588 166333 116 5 133 6 Unrestricted 0.0 Metagenome 3300002540 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - site 1 bottle 14 DOE Joint Genome Institute (JGI) 3300002540 Metagenome Analysis Yes Yes blumerschuette@oakland.edu, blumerschuette@oakland.edu; rmkelly@ncsu.edu Sara Blumer-Schuette, Sara Blumer-Schuette; Robert Kelly No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6102 -110.4387 9640893 14159 24 0 33 0 SRX2554490 Unrestricted 0.0 Metagenome 3300070539 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from North Sterling, Colorado, USA - STER_011-M-20170606-COMP-DNA1 Battelle Memorial Institute 3300070539 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Agricultural land Soil Unclassified Terrestrial soil 40.461168 -103.031538 6.82-8.17 19050480 57544 59 2 131 6 0.0 Metagenome 3300013330 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100585 University of Pennsylvania 3300013330 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9101584 21183 18 7 38 18 SRX756169 0.0 Metagenome 3300021204 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge C. singaporensis associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - co46is 200bp-microeukaryotes University of New South Wales 3300021204 Metagenome Analysis IDBA-UD released by JGI data releasing policy Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Coelocarteria singaporensis (marine sponge) -9.8241 150.825833 227072 506 0 0 0 0 0.0 Metagenome 3300041419 *Microbiome Permanent Draft Soil microbial communities from Pirana landfill, Ahmedabad, India Soil microbial communities from Pirana landfill, Ahmedabad, India - LSS02 CeGaT 3300041419 Metagenome Analysis Megahit v. 1.2.9 released by JGI data releasing policy No Yes mitali.merchant@iitkgp.ac.in Mitali Merchant No Environmental Terrestrial Unclassified Soil Unclassified Soil 22.980368 72.566 281761836 564170 326 10 548 23 0.0 Metagenome 3300039985 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Temperate deciduous broadleaf forest soil microbial communities from Baltimore, USA - 004_R1 University of Maryland 3300039985 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate deciduous broadleaf forest soil 39.3445 -76.6006667 17928231 54285 146 8 303 11 0.0 Metagenome 3300001091 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0203 DOE Joint Genome Institute (JGI) 3300001091 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 7.33 -26.0 42896525 96736 62 1 97 7 SRX1983337 Unrestricted 0.0 Metagenome 3300050116 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim1 20-24 DOE Joint Genome Institute (JGI) 3300050116 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.352987 19.047292 700798052 995360 164 5 247 8 Restricted 16.75 Metagenome 3300012549 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100752 University of Pennsylvania 3300012549 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9565191 20653 32 5 73 11 SRX756098 0.0 Metagenome 3300059593 *Microbiome Permanent Draft Sorghum rhizosphere and bulk soil microbial communities from University of Arizona Maricopa Agricultural Center, AZ, USA Soil microbial communities from sorghum plot in University of Arizona Maricopa Agricultural Center, AZ, USA - 7_0-15-20210518_a DOE Joint Genome Institute (JGI) 3300059593 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Agricultural land Soil Unclassified Soil 33.07735 -111.974819 371443121 918568 594 24 1073 47 Unrestricted 8.04 Metagenome 3300045278 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_5_F DOE Joint Genome Institute (JGI) 3300045278 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 202761377 237996 117 1 146 2 Unrestricted 108.63 Metagenome 3300003339 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Midwestern USA - DC3-124 DOE Joint Genome Institute (JGI) 3300003339 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 1679339 5462 23 2 15 4 SRX2770434 Unrestricted 0.0 Metagenome 3300012616 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100496 University of Pennsylvania 3300012616 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 18291499 44545 22 0 25 0 SRX756502 0.0 Metagenome 3300021343 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Coastal seawater microbial communities from Marineland, Florida, United States - SWPA TP2 #3 DOE Joint Genome Institute (JGI) 3300021343 Metagenome Analysis spades v. 3.11.1-check Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6703 -81.2145 402039673 718776 309 18 377 32 SRX3985562 Unrestricted 24.72 Metagenome 3300042714 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from Lucky Strike-Eifeltower hydrothermal vent, Atlantic Ocean - BazoSym_LS-ET_4_1048I Re-assembly Max Planck Institute for Marine Microbiology 3300042714 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 37.28292 -32.27561 6947285 10718 3 1 6 1 ERX3367190 0.0 Metagenome 3300009939 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R14 University of New South Wales 3300009939 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 119694935 200189 72 2 94 5 0.0 Metagenome 3300023237 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #367 DOE Joint Genome Institute (JGI) 3300023237 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 179194270 293677 92 19 124 24 SRX4396775 Unrestricted 21.11 Metagenome 3300013883 *Microbiome Permanent Draft Microbial communities from methanogenic microcosms from oil petroleum samples laboratory microbial enrichments from Reconcavo Basin petroleum reservoir, Newcastle Upon Tyne, UK - 15 gl 40C L2 15gl 40C L2 UNIVERSIDADE DE SAO PAULO 3300013883 Metagenome Analysis METASPADES k=79 No Yes inatalia.sierra@gmail.com Isabel Natalia Sierra Garcia No Engineered Lab enrichment Anaerobic media Defined media Unclassified Laboratory microcosms 54.97825278 -1.61778056 41316940 62021 58 0 64 0 0.0 Metagenome 3300065482 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Abby Road, Pacific Northwest, WA, USA - ABBY_061-M-20170606-COMP-DNA1 re-annotation Battelle Memorial Institute 3300065482 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.76243 -122.33033 95493014 285087 148 17 278 27 0.0 Metagenome 2088090003 *Microbiome Permanent Draft Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN Beijing Genomics Institute (BGI), Lifesequencing S.L. 2088090003 Metagenome Analysis Not Assembled released per JGI data release policy No Yes manuel.fernandez@eez.csic.es Fernandez-Lopez, Manuel No Host-associated Plants Rhizosphere Roots Soil Quercus rhizosphere 36.96971 -3.46027 158961149 438252 299 57 564 0 0.0 Metagenome 3300031877 *Microbiome Permanent Draft Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP9 DOE Joint Genome Institute (JGI) 3300031877 Metagenome Analysis spades v. 3.12.0 Yes Yes rlsimister@gmail.com Rachel Simister No Environmental Aquatic Lake Freshwater Sediment sediment -2.7726 121.4938 695729827 1281417 513 0 837 5 SRX6422719 Unrestricted 19.64 Metagenome 3300027132 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepC_8h DOE Joint Genome Institute (JGI) 3300027132 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 125940965 245623 105 9 148 16 SRX5245223 Unrestricted 21.72 Metagenome 3300034098 *Microbiome Permanent Draft Amphipod Gut Microbiome Amphipod gut microbial communities in Hirondellea gigas from the Mariana Trench, Sirena Deep, Pacific Ocean - M7 M7 Beijing Novogene Bioinformatics Technology Co., Ltd 3300034098 Metagenome Analysis IDBA v. 1.1.1 released by JGI data releasing policy No Yes dbartlett@ucsd.edu Douglas Bartlett No Host-associated Arthropoda: Crustaceans Gut Digestive system Unclassified Amphipod gut 12.5075 144.96055556 26896428 42224 2 4 2 4 SRX3211048, SRX3211038, SRX3211044, SRX3211046, SRX3211040, SRX3211042 0.0 Metagenome 7000000437 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human palatine tonsils microbial communities from NIH, USA - visit 1, subject 763496533 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000437 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Tonsils Lymphatic system Palatine/Faucial Human 39.0042816 -77.1012173 44876401 75751 0 0 0 0 SRX024928 0.0 Metagenome 3300006083 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS908_Marker33_DNA Marine Biological Laboratory 3300006083 Metagenome Analysis CLC genomics wb7 released by Caroline Fortunato No Yes cfortunato@mbl.edu, cfortunato@gmail.com; randerson@carleton.edu; elks@mit.edu Caroline Fortunato, Caroline Fortunato; Rika Anderson; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 235585392 563401 202 18 383 37 0.0 Metagenome 3300025695 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025695 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 482343886 884392 291 34 423 49 SRX2569220 Unrestricted 0.0 Metagenome 3300005716 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Hydrocarbon resource environments microbial communities from Canada and USA - Toluene degrading community from Alberta, Canada McGill University 3300005716 Metagenome Analysis Unkonwn No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 54.0 -114.0 9404485 3359 1 0 1 0 0.0 Metagenome 3300019930 *Microbiome Permanent Draft Arctic soil viral communities from Stordalen Mire, Sweden Arctic soil viral communities from Stordalen Mire, Sweden - P+N2 DOE Joint Genome Institute (JGI) 3300019930 Metagenome Analysis spades v. SPAdes version: 3.10.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Terrestrial Palsa Soil Mineral soil core arctic soil 68.3526 19.0147 130767 420 2 0 2 0 SRX5627513 Restricted 0.0 Metagenome 3300037581 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Seawater microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR08_37 DOE Joint Genome Institute (JGI) 3300037581 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Unclassified seawater 47.7626 -127.7592 93074571 268517 129 13 232 24 SRX9096345 Unrestricted 77.48 Metagenome 3300028995 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 38_4M Beijing Genomics Institute (BGI) 3300028995 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 51530559 58415 30 0 46 0 ERX491120 0.0 Metagenome 3300038442 *Microbiome Permanent Draft Non-marine hypersaline water viral communities from saltern ponds in Alicante, Spain Non-marine hypersaline water viral communities from Bras del Port saltern pond in Alicante, Spain - CR30_FEB2014_0.2_filtr FISABIO - Public Health 3300038442 Metagenome Analysis metaspades v. 3.6.0 released by JGI data releasing policy No Yes fernando.santos@ua.es Fernando Santos No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline water 47.6829 2.618 15902452 31154 0 0 2 0 0.0 Metagenome 3300040338 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_044-M-20170802-COMP-DNA1 Battelle Memorial Institute 3300040338 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 4690057 14270 33 3 65 1 0.0 Metagenome 3300008436 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 370425937 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008436 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 102493014 139777 110 0 115 0 0.0 Metagenome 3300069554 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Moab, Southern Rockies & Colorado Plateau, UT, USA - MOAB_001-M-20160727-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069554 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.24833 -109.38827 225904399 623721 253 8 499 10 0.0 Metagenome 3300009093 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG DOE Joint Genome Institute (JGI) 3300009093 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 4108314104 7545973 2413 212 3863 348 SRX3203322 Unrestricted 0.0 Metagenome 3300007670 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1449C-3 DOE Joint Genome Institute (JGI) 3300007670 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2327 -123.9168 275015726 572103 317 58 514 80 SRX2753612 Unrestricted 0.0 Metagenome 3300012984 *Microbiome Permanent Draft Amended soil microbial communities from New York, USA to study carbon cycling Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG DOE Joint Genome Institute (JGI) 3300012984 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes twhitman@wisc.edu Thea Whitman No Environmental Terrestrial Unclassified Soil Agricultural land soil 42.4531 -76.3842 2684201728 5982294 2269 177 3826 340 SRX3568597 Unrestricted 5.57 Metagenome 3300029341 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 026_10_29_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029341 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 253452164 357091 277 0 369 0 0.0 Metagenome 3300020200 *Microbiome Permanent Draft Freshwater microbial communities from Lake Tanganyika, Tanzania Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015020 Mahale Deep Cast 50m DOE Joint Genome Institute (JGI) 3300020200 Metagenome Analysis spades v. 3.10.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater lake -6.1786 29.658 1528681534 2656613 609 42 867 58 SRX3983797 Unrestricted 32.06 Metagenome 3300030062 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces viral communities from healthy individual in Houston, USA - MG100101 University of Michigan 3300030062 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 29.76 -95.37 6669743 10526 11 0 20 0 0.0 Metagenome 3300008108 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA University of Michigan 3300008108 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7026 -83.2538 9.29 1129501953 1889032 659 139 969 231 0.0 Metagenome 3300009705 *Microbiome Permanent Draft Marine microbial communities from western Arctic Ocean Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 DOE Joint Genome Institute (JGI) 3300009705 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh Yes 30271971 Environmental Aquatic Oceanic Marine Unclassified Marine 77.0991 -150.2252 1619886882 3223797 800 356 1312 521 SRX2997514 Unrestricted 0.0 Metagenome 3300042292 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Oct2015-rr0416 DOE Joint Genome Institute (JGI) 3300042292 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 788319538 1216855 376 123 467 165 Unrestricted 22.42 Metagenome 3300017679 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - K13-05 University of Michigan 3300017679 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.52346 -83.666 75623079 92169 29 1 45 1 0.0 Metagenome 3300033557 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B DOE Joint Genome Institute (JGI) 3300033557 Metagenome Analysis spades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified soil 41.3776 -82.5117 5410531021 13480524 3212 45 6073 86 SRX6871086 Unrestricted 7.05 Metagenome 3300006175 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG DOE Joint Genome Institute (JGI) 3300006175 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.4774 -85.451 4454265680 12881757 2680 135 4465 241 SRX2745055 Unrestricted 0.0 Metagenome 3300055723 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.1W.7 SIP fraction DOE Joint Genome Institute (JGI) 3300055723 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 268845201 487092 136 8 195 7 Unrestricted 13.57 Metagenome 3300069430 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountain National Park, Central Plains, CO, USA - RMNP_045-O-20170807-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069430 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.27591 -105.54592 4650373 14415 20 2 53 3 0.0 Metagenome 3300014661 *Microbiome Permanent Draft Fecal viral communites from wild urban brown rats in Berlin, Germany Fecal viral communites from wild urban brown rats in Berlin, Germany - KS/11/0577 Freie University Berlin 3300014661 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 52.529611 13.401343 1764712 4254 0 0 1 0 SRX616522 0.0 Metagenome 3300000771 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 04OCT2008 hypolimnion DOE Joint Genome Institute (JGI) 3300000771 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300000936 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 22 DOE Joint Genome Institute (JGI) 3300000936 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 25490760 65025 86 6 138 10 SRX1984818 Unrestricted 0.0 Metagenome 3300020495 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 20APR2010 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020495 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 86760539 171499 61 38 89 69 SRX1988281 Unrestricted 0.0 Metagenome 3300030404 *Microbiome Permanent Draft Comammox microbial communities from various environments and locations in Europe Activated sludge microbial communities from Sewage Treatment Plant in Aalborg, Denmark - MBR_MBR1 Aalborg University 3300030404 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified Activated sludge 57.049957 9.865377 60541618 102200 33 1 41 0 0.0 Metagenome 3300052664 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Photosynthetic mat viral communities from Mushroom Spring, YNP, Wyoming, United States - MS20050701 t9 DOE Joint Genome Institute (JGI) 3300052664 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 21502144 34934 6 0 14 0 Unrestricted 0.0 Metagenome 3300027350 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F15 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027350 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 43525608 52965 55 0 53 0 SRX3195127 Unrestricted 0.0 Metagenome 7000000359 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 159915365 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000359 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 3433745 4847 0 0 0 0 0.0 Metagenome 3300012680 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ224A (23.06) DOE Joint Genome Institute (JGI) 3300012680 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.0456 164.0158 1171389766 2600309 790 6 1420 6 SRX3369431 Unrestricted 0.0 Metagenome 3300056728 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.18W.8 SIP fraction DOE Joint Genome Institute (JGI) 3300056728 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 187080543 356600 119 13 218 23 Unrestricted 13.09 Metagenome 3300007974 *Microbiome Permanent Draft Microbial communities from Columbia River Estuary, Oregon, USA Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460C_0.2um Oregon State University 3300007974 Metagenome Analysis megahit released per JGI data release policy Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Coastal Marine Unclassified estuary water 46.2357 -123.9163 486195857 1068482 408 32 674 49 0.0 Metagenome 7000000565 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 338793263 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000565 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 52664156 106701 0 0 0 0 0.0 Metagenome 3300005556 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_13_40cm DOE Joint Genome Institute (JGI) 3300005556 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2348512097 6737900 2134 52 3737 106 SRX2728781 Unrestricted 0.0 Metagenome 3300028885 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185 DOE Joint Genome Institute (JGI) 3300028885 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92030701 -106.94839471 1273500783 3342744 643 25 1135 38 SRX5354723 Unrestricted 10.07 Metagenome 7000000518 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159611913 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000518 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 103350449 195067 0 0 0 0 0.0 Metagenome 3300013993 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00613 Weill Cornell Medical College 3300013993 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.8 -73.93 12454502 22421 14 0 12 0 SRX822580 0.0 Metagenome 3300014809 *Microbiome Permanent Draft Ants gut microbial communities from Camponotus chromaiodes workers in Durant Nature Park, Raleigh, NC, USA - BBM1 Ants gut microbial communities from Camponotus chromaiodes workers in Durant Nature Park, Raleigh, NC, USA - BBM1 Duke University 3300014809 Metagenome Analysis MEGAHIT v1.1.1-2-g02102e1 released by JGI data releasing policy No Yes bpbrown@uw.edu bryan brown No Host-associated Microbial Unclassified Bacteria Unclassified ant gut 35.8967 -78.5789 282771977 259242 60 11 15 13 0.0 Metagenome 3300046478 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvC-P(3) 10-14 DOE Joint Genome Institute (JGI) 3300046478 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.355 19.0438 1019354589 1443774 203 10 323 15 Restricted 15.78 Metagenome 3300006520 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006520 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 8375519 21982 14 0 35 0 0.0 Metagenome 3300042645 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A35 University of California, Davis 3300042645 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 169161146 500029 277 4 510 3 0.0 Metagenome 3300039277 *Microbiome Permanent Draft Soil microbial communities from the crude oil polluted soil from Bobrka and the control soil from Bialowieza national park, Poland Soil microbial communities from Bialowieza Forest, Poland - X5A2 Illumina 3300039277 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy No Yes valeria.imperato@uhasselt.be Valeria Imperato No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 52.7 23.86667 11895 15 0 0 0 0 0.0 Metagenome 3300026536 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_05_40cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026536 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 737908725 1251992 372 3 633 1 SRX2728027 Unrestricted 0.0 Metagenome 3300001500 *Microbiome Permanent Draft Human axilla skin microbial communities from the University of Liverpool, UK Human axilla skin microbial communities from the University of Liverpool, UK - AX03 3300001500 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Host-associated Mammals: Human Skin Integumentary system Axilla/Armpit Human axilla skin 53.3484 -3.009 12241494 24117 36 0 43 0 0.0 Metagenome 3300022422 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Lake Baghdad, Rottnest Island (WA - Australia) - LBBM2 JM17 AGRF 3300022422 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.994794 115.523776 45330418 89132 40 1 67 1 0.0 Metagenome 3300023026 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C2 DOE Joint Genome Institute (JGI) 3300023026 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Elk feces 38.04 -122.5 66299665 156003 376 7 707 9 SRX4415384 Unrestricted 7.78 Metagenome 3300017733 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 49 SPOT_SRF_2013-12-23 DOE Joint Genome Institute (JGI) 3300017733 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 216418728 548823 70 27 118 53 SRX5471779, SRX5471778, SRX5471780 Unrestricted 0.0 Metagenome 3300048546 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_201118.NP1 DOE Joint Genome Institute (JGI) 3300048546 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 855886690 1882395 539 76 794 147 Unrestricted 11.8 Metagenome 3300002955 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic Ocean affecting the dissolved organic carbon pool Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - DCM_A/KNORR_S2/LV DOE Joint Genome Institute (JGI) 3300002955 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -37.9951 -44.9972 112393422 286419 284 11 537 19 SRX2566747 Unrestricted 0.0 Metagenome 3300025424 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE06Nov07 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025424 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 180617565 342909 99 39 153 71 SRX2565285 Unrestricted 0.0 Metagenome 3300048619 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Roots microbial communities from millet plant in semiarid region near Thies, Senegal - COC3E DOE Joint Genome Institute (JGI) 3300048619 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Unclassified Roots Unclassified Root 14.75 -16.85 1103754183 1652453 19 31 37 78 Unrestricted 29.94 Metagenome 3300050004 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - 2-2 DOE Joint Genome Institute (JGI) 3300050004 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 477216609 1265477 670 25 1254 36 Restricted 0.0 Metagenome 3300025859 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC034_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025859 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 39.84 -89.0 779020248 1463790 632 2 1031 9 SRX2338787 Unrestricted 0.0 Metagenome 3300012894 *Microbiome Permanent Draft Solar panel surface microbial communities from Lawrence Berkeley National Laboratory, California, USA Solar panel surface microbial communities from Lawrence Berkeley National Laboratory, California, USA - L DOE Joint Genome Institute (JGI) 3300012894 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes trnorthen@lbl.gov Trent Northen No Engineered Built environment Unclassified Solar panel Unclassified solar cell surface 37.876387 -122.246777 773293537 1405931 537 768 661 1424 SRX3901020 Unrestricted 0.0 Metagenome 3300011509 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway plastic -P00926 Weill Cornell Medical College 3300011509 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Plastic surface city subway plastic 40.74 -73.95 19279573 30415 16 0 23 0 SRX822889 0.0 Metagenome 3300049736 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_170222.NP2 DOE Joint Genome Institute (JGI) 3300049736 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 855110696 1926999 557 59 847 84 Unrestricted 13.58 Metagenome 3300037178 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 P1 30-34 DOE Joint Genome Institute (JGI) 3300037178 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3545 19.0465 841432186 1545378 257 7 468 6 SRX8144881 Unrestricted 9.85 Metagenome 3300022303 *Microbiome Permanent Draft Anaerobic microbial community of wastewater bioreactor in Changsha, Hunan, China Activated sludge microbial communities from anaerobic bioreactor in Hunan University, Changsha, China - 11 Beijing Novogene Bioinformatics Technology Co., Ltd 3300022303 Metagenome Analysis IDBA v.1.1.1 released by JGI data releasing policy No Yes yuezheng@uw.edu Yue Zheng No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 28.2127 113.0106 689333234 1286069 581 7 961 11 0.0 Metagenome 3300050462 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - W12W16 DOE Joint Genome Institute (JGI) 3300050462 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 114864341 208824 180 48 378 67 Unrestricted 17.81 Metagenome 3300011391 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT163_2 DOE Joint Genome Institute (JGI) 3300011391 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9226 -106.9507 74356556 187471 293 11 598 37 SRX3368757 Unrestricted 0.0 Metagenome 3300025242 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025242 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 151208115 189464 65 0 86 0 SRX2770678 Unrestricted 0.0 Metagenome 3300045919 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Microbial mat bacterial communities from wetland, North Slope, Alaska, United States - TFS_WetSedge10_20July2019 DOE Joint Genome Institute (JGI) 3300045919 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes demerson@bigelow.org David Emerson No Environmental Aquatic Wetlands Freshwater Unclassified wetland microbial mat 68.6254 -149.5895 1719389679 2721475 777 291 1177 443 Unrestricted 17.47 Metagenome 3300005088 *Microbiome Permanent Draft Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich - 33I-101 University of Cincinnati 3300005088 Metagenome Analysis Velvet v. 0.7.57 released per JGI data release policy No Yes rlamendella@lbl.gov Regina Lamendella No Environmental Aquatic Groundwater Freshwater Contaminated Groundwater 40.0 -74.5 0 0 0 0 0 0 0.0 Metagenome 3300035220 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2018_10m DOE Joint Genome Institute (JGI) 3300035220 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 50.0 -145.0 849951410 1951765 350 81 585 117 SRX8188497 Unrestricted 11.63 Metagenome 3300038600 *Microbiome Permanent Draft Freshwater microbial communities from various watersheds in Southwestern British Columbia, Canada Freshwater microbial communities from Southwestern British Columbia, Canada - PDS_043 University of British Columbia 3300038600 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 49.0 -123.0 7828225 17683 18 0 34 0 0.0 Metagenome 3300015680 *Microbiome Permanent Draft Microbial communities associated with sugarcane Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.2_H03 Universidade Estadual de Campinas 3300015680 Metagenome Analysis SPADES released by JGI data releasing policy No Yes scs.rafael@gmail.com Rafael Souza No Host-associated Plants Rhizosphere Roots Unclassified rizhosphere -22.8187222 -47.05896667 4992773 4979 8 0 6 0 0.0 Metagenome 3300029179 *Microbiome Permanent Draft Aquariaum water viral communities from Chicago, USA Aquariaum water viral communities from Chicago, USA - Amazon Rising - AZ2 Michigan State University 3300029179 Metagenome Analysis released Yes Yes No Environmental Aquatic Unclassified Aquaculture Unclassified Aquarium water 41.87 -87.61 32559669 74154 82 0 185 2 0.0 Metagenome 3300048018 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_130227.NP1 DOE Joint Genome Institute (JGI) 3300048018 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 581267721 1264305 433 86 596 171 Unrestricted 14.52 Metagenome 3300010162 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010162 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 5.0626 -53.0462 3054717051 4715749 2251 265 3728 398 SRX2525399, SRX2525398 Unrestricted 0.0 Metagenome 3300052662 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Photosynthetic mat viral communities from Mushroom Spring, YNP, Wyoming, United States - MS20060911 MSe2A DOE Joint Genome Institute (JGI) 3300052662 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 28600422 44934 16 0 24 0 Unrestricted 0.0 Metagenome 3300002556 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - site 1 bottle 13 DOE Joint Genome Institute (JGI) 3300002556 Metagenome Analysis Yes Yes blumerschuette@oakland.edu, blumerschuette@oakland.edu; rmkelly@ncsu.edu Sara Blumer-Schuette, Sara Blumer-Schuette; Robert Kelly No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6102 -110.4387 10644896 15873 16 0 25 0 SRX2554489 Unrestricted 0.0 Metagenome 3300040506 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_027-O-20170624-COMP-DNA1 Battelle Memorial Institute 3300040506 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 3269467 10583 26 5 53 11 0.0 Metagenome 3300025111 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection A3 (SPAdes) DOE Joint Genome Institute (JGI) 3300025111 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.53 -107.78 474671520 903200 514 31 859 63 SRX1990960 Unrestricted 0.0 Metagenome 3300007972 *Microbiome Permanent Draft Microbial communities from Columbia River Estuary, Oregon, USA Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0um Oregon State University 3300007972 Metagenome Analysis megahit released per JGI data release policy Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Coastal Marine Unclassified estuary water 46.2357 -123.9153 465169207 1030156 569 160 967 295 0.0 Metagenome 3300005689 *Microbiome Permanent Draft Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia Enhanced biological phosphorus removal bioreactor viral communities from the University of Queensland, Australia - SBR4-V92810 Phage Sequencing University of Queensland 3300005689 Metagenome Analysis CLC 6.0 Released per Connor Skennerton (Sep 15, 2015) No Yes c.skennerton@gmail.com Connor Skennerton No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor lab-scale EBPR bioreactor -27.49999 153.012098 71664565 163735 36 3 59 6 0.0 Metagenome 3300031387 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #232 DOE Joint Genome Institute (JGI) 3300031387 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 403047203 666065 92 37 133 50 SRX5649475 Unrestricted 30.95 Metagenome 3300046381 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA036-CHB DOE Joint Genome Institute (JGI) 3300046381 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6359 -83.4952 411485214 1097614 349 23 641 37 Unrestricted 8.24 Metagenome 3300009486 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS856 no min length Marine Biological Laboratory 3300009486 Metagenome Analysis Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow marine hydrothermal vent 6.66 237391350 907829 182 11 478 27 0.0 Metagenome 3300013638 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00861 Weill Cornell Medical College 3300013638 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -73.82 8512296 15541 6 0 13 0 SRX822827 0.0 Metagenome 3300069278 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_042-O-20210803-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069278 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tundra Soil Unclassified Terrestrial soil 68.664072 -149.381292 2672095979 6305045 1175 203 2123 326 0.0 Metagenome 3300026709 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-E (SPAdes) DOE Joint Genome Institute (JGI) 3300026709 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 14586602 48373 46 3 90 4 SRX2575852 Unrestricted 0.0 Metagenome 3300013373 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100257 University of Pennsylvania 3300013373 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 7954646 22708 13 0 28 0 SRX756644 0.0 Metagenome 3300048065 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_200617.NP1 DOE Joint Genome Institute (JGI) 3300048065 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 769311420 1659874 400 129 661 197 Unrestricted 13.2 Metagenome 3300005667 *Microbiome Permanent Draft Methanobrevibacter type strains Metagenomic data from Methanobrevibacter acididurans DSM 15163 culture Commonwealth Scientific and Industrial Research Organisation (CSIRO) 3300005667 Metagenome Analysis SPAdes 3.5.0 careful mode released per JGI data release policy Yes Yes carly.rosewarne@gmail.com Carly Rosewarne No Engineered Bioreactor Unclassified Anaerobic Unclassified anaerobic digester 18.5205 73.8315 6106882 6034 8 0 4 0 0.0 Metagenome 3300025422 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI072_LV_165m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025422 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 185432302 354975 161 6 251 9 Unrestricted 0.0 Metagenome 3300071118 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from KU Field Station, Kansas, USA - UKFS_004-M-20180815-COMP-DNA1 3300071118 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 17186187 53362 48 6 105 6 0.0 Metagenome 3300000489 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil ZC3D64 University of Sao Paulo 3300000489 Metagenome Analysis Newbler released per PI's request No Yes almsilva@iq.usp.br Aline Maria da Silva Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651079 -46.620668 20493222 36883 58 0 105 0 0.0 Metagenome 3300050002 *Microbiome Permanent Draft Marine sediment microbial communities from Pacific Ocean, California, USA Marine sediment microbial communities from Pacific Ocean, California, USA - SDPL21_R1 DOE Joint Genome Institute (JGI) 3300050002 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pjensen@ucsd.edu Paul r. Jensen No Environmental Aquatic Intertidal zone Marine Sediment Marine sediment 32.66 -117.24 540685040 858264 222 13 372 19 Unrestricted 11.48 Metagenome 3300005955 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T2_23-Sept-14 DOE Joint Genome Institute (JGI) 3300005955 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 187257156 624443 438 122 799 227 SRX2838895 Unrestricted 0.0 Metagenome 3300031369 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-90 DOE Joint Genome Institute (JGI) 3300031369 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.759 -70.891 453699818 914988 437 6 722 7 SRX5358230 Unrestricted 12.22 Metagenome 3300022424 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1OPP2 JM74 AGRF 3300022424 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 49943629 90242 47 1 57 2 0.0 Metagenome 3300022859 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #799 DOE Joint Genome Institute (JGI) 3300022859 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 148572713 283931 110 5 176 8 SRX4397193 Unrestricted 19.24 Metagenome 3300049509 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MC29 DOE Joint Genome Institute (JGI) 3300049509 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 24348892 59268 81 2 214 2 Unrestricted 21.29 Metagenome 3300050464 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - W16W6 DOE Joint Genome Institute (JGI) 3300050464 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 173647392 317337 213 57 434 73 Unrestricted 17.61 Metagenome 3300011736 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00938 Weill Cornell Medical College 3300011736 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.77 -73.91 40140374 53343 13 0 24 0 SRX822901 0.0 Metagenome 7000000046 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159591683 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000046 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 134092842 234520 0 0 0 0 0.0 Metagenome 3300011971 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A7_80cm_12M University of Tennessee 3300011971 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 103125562 236623 35 1 76 0 SRX710617 0.0 Metagenome 3300025244 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP-81 (SPAdes) DOE Joint Genome Institute (JGI) 3300025244 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es; mbsulli@gmail.com Silvia G. Acinas; Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -28.4105 179.1447 121081966 283792 77 3 107 7 SRX4915166 Unrestricted 0.0 Metagenome 3300006496 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human saliva microbial communities from NIH, USA - visit 2, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006496 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human 39.0042816 -77.1012173 75609468 167223 69 1 120 1 0.0 Metagenome 3300008967 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada T0 (2) T34 (live) enrichments of Methanogenic microbial communities using Athabascan oil sands DE NOVO (2) Shell Corporation 3300008967 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 66145640 246395 84 2 164 3 0.0 Metagenome 3300012892 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 DOE Joint Genome Institute (JGI) 3300012892 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 524128501 1324370 752 54 1437 119 SRX4808252, SRX4808253 Unrestricted 0.0 Metagenome 3300025303 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025303 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 421927747 662671 123 0 148 0 SRX2770683 Unrestricted 0.0 Metagenome 3300032220 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada - Lake 06-196 Genome Quebec 3300032220 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.480215 -80.973773 529073104 1055557 237 78 411 117 0.0 Metagenome 3300002088 *Microbiome Permanent Draft Soil microbial communities from Kansas (Konza Prairie Natural Area and Manhattan, Kansas, USA) Soil microbial communities from Manhattan, Kansas, USA - Sample 200um emPCR DOE Joint Genome Institute (JGI) 3300002088 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 revert back to private per Christa Yes Yes sgtringe@lbl.gov, sgtringe@lbl.gov; ELBrodie@lbl.gov Susannah Tringe, Susannah Tringe; Eoin Brodie No Environmental Terrestrial Unclassified Soil Unclassified Soil 39.214 -96.5852 1663501 2873 3 0 8 0 Unrestricted 0.0 Metagenome 3300042919 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-334 Genome Quebec 3300042919 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.89478 -120.31 1347948243 2893539 519 292 929 559 0.0 Metagenome 3300022242 *Microbiome Permanent Draft Anaerobic microbial community of wastewater bioreactor in Changsha, Hunan, China Activated sludge microbial communities from anaerobic bioreactor in Hunan University, Changsha, China - 8 Beijing Novogene Bioinformatics Technology Co., Ltd 3300022242 Metagenome Analysis IDBA v.1.1.1 released by JGI data releasing policy No Yes yuezheng@uw.edu Yue Zheng No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 28.2127 113.0106 608788046 1126303 526 2 833 5 0.0 Metagenome 3300020176 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011505AT metaG (spades assembly) DOE Joint Genome Institute (JGI) 3300020176 Metagenome Analysis spades v. 3.10.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 731768505 1338456 402 32 612 52 SRX3919207 Unrestricted 42.4 Metagenome 3300018890 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - mid-late stage, bundles v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018890 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 359412407 663757 254 5 458 12 0.0 Metagenome 3300027134 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepA_8h DOE Joint Genome Institute (JGI) 3300027134 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 93299765 247593 162 18 288 23 SRX5245173 Unrestricted 14.2 Metagenome 3300000148 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 100m DOE Joint Genome Institute (JGI) 3300000148 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 127140188 276622 72 5 172 2 Unrestricted 0.0 Metagenome 3300026308 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_05_20cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026308 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 381620668 767106 403 21 662 34 SRX2726262 Unrestricted 0.0 Metagenome 3300065484 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Abby Road, Pacific Northwest, WA, USA - ABBY_006-M-20170605-COMP-DNA1 re-annotation Battelle Memorial Institute 3300065484 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.76243 -122.33033 31557111 99195 109 6 181 16 0.0 Metagenome 3300044209 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - DOSP2-9-6-19 DOE Joint Genome Institute (JGI) 3300044209 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.098 -120.7138 337871143 953005 779 29 1389 64 Restricted 7.11 Metagenome 3300002716 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A4w-12 DOE Joint Genome Institute (JGI) 3300002716 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 412402 1390 22 3 38 6 SRX1991248 Unrestricted 0.0 Metagenome 3300022695 *Microbiome Permanent Draft Deep Sea Chimney Vent Samples 2015 - Flores Lab Hydrothermal vent microbial communities from dead black smoker in Mariner Vent Field, Eastern Lau Spreading Center, Pacific Ocean - I University of California, Irvine 3300022695 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent 22.180198 176.601109 74893561 85528 19 0 23 0 0.0 Metagenome 3300028375 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #431 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028375 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 190542528 310043 77 24 99 49 SRX3295552 Unrestricted 0.0 Metagenome 3300041930 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from the Rocky Mountain Biological Laboratory (RMBL), Gothic, Colorado, United States - 2018WM_3C DOE Joint Genome Institute (JGI) 3300041930 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9595 -106.99 149170817 433901 223 10 390 14 SRX14810732 Unrestricted 8.3 Metagenome 3300000535 *Microbiome Draft Soil microbial communities from the Kellog Biological Station, Michigan, US, in response to alternate cropping systems KBS GLBRC Intensive site T1R1 Sept09 v2 (version 2) DOE Joint Genome Institute (JGI) 3300000535 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes tschmidt@msu.edu Thomas Schmidt, Thomas M. Schmidt No Environmental Terrestrial Unclassified Soil Unclassified Soil 42.405849 -85.384504 24047474 67764 243 42 440 58 Unrestricted 0.0 Metagenome 3300069552 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Ozarks Complex, AL, USA - LENO_064-M-20160829-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069552 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.85388 -88.16122 8866087 27672 60 3 106 3 0.0 Metagenome 3300044929 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_6_B DOE Joint Genome Institute (JGI) 3300044929 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 190669818 228010 111 1 136 2 Unrestricted 63.89 Metagenome 3300020051 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011504AT metaG (spades assembly) DOE Joint Genome Institute (JGI) 3300020051 Metagenome Analysis spades v. 3.10.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 733169019 1387896 344 20 612 24 SRX3919121 Unrestricted 42.3 Metagenome 3300039750 *Microbiome Permanent Draft Glacier soil microbial communities from Mackay Glacier, Antarctica Glacier soil microbial communities from Mackay Glacier, Antarctica - CN-4 University of Pretoria 3300039750 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Terrestrial Glacier Soil Unclassified Glacier soil -76.11 162.011 39424465 79263 35 3 59 3 0.0 Metagenome 3300030064 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces viral communities from healthy individual in Houston, USA - MG100118 University of Michigan 3300030064 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 29.76 -95.37 3586458 6463 4 0 11 0 0.0 Metagenome 3300040117 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from LBJ National Grassland , Southern Plains, TX, USA - CLBJ_003-M-20170411-COMP-DNA1 Battelle Memorial Institute 3300040117 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 33.40123 -97.57 11932827 32970 34 1 59 4 0.0 Metagenome 3300042294 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2012-rr0417 DOE Joint Genome Institute (JGI) 3300042294 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 995022967 1561252 317 52 422 83 Unrestricted 21.05 Metagenome 3300031715 *Microbiome Permanent Draft Hardwood forest soil microbial communities from various locations in the United States Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05 DOE Joint Genome Institute (JGI) 3300031715 Metagenome Analysis spades v. 3.12.0 Yes Yes jdraff@indiana.edu Jonathan Raff No Environmental Terrestrial Temperate forest Soil Bulk soil hardwood forest soil 39.0844 -86.4705 2547392199 5640749 835 87 1484 147 SRX5649048 Unrestricted 8.66 Metagenome 3300042473 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME29May2018-rd0687 DOE Joint Genome Institute (JGI) 3300042473 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 611552950 957973 216 25 293 38 Unrestricted 18.45 Metagenome 3300012982 *Microbiome Permanent Draft Weathered mine tailings microbial communities from Hibbing, Minnesota, USA Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCWfield University of Minnesota - Twin Cities 3300012982 Metagenome Analysis metaSPAdes released by JGI data releasing policy Yes Yes daniel.s.jones@nmt.edu Daniel Jones No Environmental Terrestrial Mine Geologic Unclassified Weathered mine tailings 47.432362 -92.940835 218934972 314971 75 1 122 2 0.0 Metagenome 3300030323 *Microbiome Permanent Draft Activated sludge microbial communities from CSTR anaerobic reactor in Belvaux, Luxembourg Activated sludge microbial communities from CSTR anaerobic reactor in Belvaux, Luxembourg - CSTR_M36 Luxembourg Institute of Science and Technology 3300030323 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Bioreactor Unclassified Anaerobic Unclassified Activated sludge 49.508281 5.943742 35359858 53250 58 0 68 0 0.0 Metagenome 3300031768 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22 DOE Joint Genome Institute (JGI) 3300031768 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1609053790 3822658 533 4 879 13 SRX5665319 Unrestricted 11.65 Metagenome 3300028596 *Microbiome Permanent Draft Soil microbial communities from agricultural site in Penn Yan, New York, United States Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14 DOE Joint Genome Institute (JGI) 3300028596 Metagenome Analysis spades v. 3.11.1 Yes Yes dbuckley@cornell.edu Dan Buckley No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.673 -77.032 2790263815 7313983 1433 108 2411 177 SRX5246688 Unrestricted 23.82 Metagenome 3300048786 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 E1 20-24 DOE Joint Genome Institute (JGI) 3300048786 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.0467 478241769 762532 250 3 419 4 Restricted 14.6 Metagenome 3300050035 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvC-P(2) 10-14 DOE Joint Genome Institute (JGI) 3300050035 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.355 19.0438 550406670 726412 192 9 222 15 Restricted 26.17 Metagenome 3300004053 *Microbiome Permanent Draft Oil sludge microbial communities from Kazan, Tatarstan Republic, Russia Oil sludge microbial communities from Kazan, Tatarstan Republic, Russia- Sample Industrial hydrocarbon sludge Kazan Federal University 3300004053 Metagenome Analysis Velvet released per JGI data release policy No Yes boulygina@gmail.com Evgenia Boulygina, Eugenia Boulygina No Engineered Wastewater Unclassified Industrial wastewater Unclassified Oil sludge 55.860572 48.996319 0 0 0 0 0 0 0.0 Metagenome 3300026222 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-061 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026222 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Permafrost soil 68.6137 -149.3144 228462733 548418 337 5 500 8 SRX2755647 Unrestricted 0.0 Metagenome 3300007779 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160502038 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007779 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 20996710 43265 34 0 39 4 0.0 Metagenome 3300048550 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_201216.NP1 DOE Joint Genome Institute (JGI) 3300048550 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 814627399 1743809 553 97 758 181 Unrestricted 12.28 Metagenome 3300040934 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - FS_N2_1 DOE Joint Genome Institute (JGI) 3300040934 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.5324 -110.7974 212774134 347143 102 1 132 0 SRX9633755 Unrestricted 484.75 Metagenome 3300004761 *Microbiome Permanent Draft Anaerobic benzene degrading enrichment culture under sulfate reducing conditions from Germany Anaerobic benzene degrading enrichment culture under sulfate reducing conditions from Germany Helmholtz Zentrum Munchen 3300004761 Metagenome Analysis newbler 2.7 released per PI's request No Yes xiyang.dong@helmholtz-muenchen.de, xiyang.dong@ucalgary.ca Xiyang DONG No Engineered Lab enrichment Unclassified Unclassified Unclassified anaerobic benzene degrading fresh water medium 48.17 11.6 7 16873031 21216 9 0 11 0 0.0 Metagenome 3300032456 *Microbiome Permanent Draft Freshwater microbial communities from lake liftoff mats and glacier meltwater in Antarctica Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-03 (spades assembly) (version 2) DOE Joint Genome Institute (JGI) 3300032456 Metagenome Analysis spades v. 3.13.0 Yes Yes slonczewski@kenyon.edu Joan Slonczewski No Environmental Aquatic Ice Freshwater Liftoff microbial mat Freshwater -77.605 163.163 2226998185 3962120 954 41 1345 81 SRX2522269 Unrestricted 22.62 Metagenome 3300033052 *Microbiome Permanent Draft Characterization of microbial community from aquifers in Araihazar, Bangladesh Aquifer fluids microbial communities from Pleistocene sands, Araihazar, Bangladesh - F4 Site University of Manchester 3300033052 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Terrestrial Aquifer Deep subsurface Unclassified Aquifer fluid 23.774 90.606 251019395 350406 219 7 222 10 0.0 Metagenome 3300038308 *Microbiome Permanent Draft Surface and well water microbial communities from Bara Haldia, Bangladesh Well water microbial communities from Bangladesh - BaraHaldiaGW1112 University of Tennessee 3300038308 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Groundwater Freshwater Unclassified Well water 22309967 46206 34 0 68 0 0.0 Metagenome 3300003073 *Microbiome Permanent Draft Marine microbial communities from surface seawater at Puget Sound Marine surface microbial communities Puget Sound, Washington, USA University of Washington 3300003073 Metagenome Analysis Velvet v. 0.7.63 Made public because these are downloaded from Genbank No Yes armbrust@uw.edu Armbrust EV, E. Virginia (Ginger) Armbrust No Environmental Aquatic Oceanic Marine Photic zone Marine 47.6906558 -122.404411 2059964 1892 1 0 1 0 0.0 Metagenome 3300017770 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 15 SPOT_SRF_2010-09-15 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017770 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 519825035 1195666 108 66 202 128 SRX7207095, SRX7207094 Unrestricted 0.0 Metagenome 7000000201 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763840445 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000201 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 5232467 13603 0 0 0 0 0.0 Metagenome 3300026902 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_14-Oct-14 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026902 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 79139660 181856 151 25 283 49 SRX2838985 Unrestricted 0.0 Metagenome 3300034072 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A DOE Joint Genome Institute (JGI) 3300034072 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back fracking water 35.784 -98.26 797571176 1456623 397 88 581 120 SRX7524903 Unrestricted 57.77 Metagenome 3300009410 *Microbiome Permanent Draft Genome and metagenome analysis of marine red algae Porphyra Marine algal microbial communities from Porto, Portugal - Porto_5 metaG DOE Joint Genome Institute (JGI) 3300009410 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes brawley@maine.edu, Brawley@maine.edu Susan Brawley No Host-associated Algae Unclassified Red algae Unclassified Marine 41.162 -8.622 261884607 424115 387 4 606 5 SRX2954900 Unrestricted 0.0 Metagenome 3300060916 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Konza Prairie Bio Station, Kansas, USA - KONZ_045-M-20210721-comp-1 DOE Joint Genome Institute (JGI) 3300060916 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Grasslands Soil Unclassified Terrestrial soil 39.103827 -96.561811 3088759773 4930924 696 20 1174 28 Unrestricted 17.54 Metagenome 3300005540 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_05_30cm DOE Joint Genome Institute (JGI) 3300005540 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 1874914285 5253613 1788 22 3127 47 SRX2728028 Unrestricted 0.0 Metagenome 3300061680 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0586 Microbiome Insights 3300061680 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 116465336 171713 109 12 185 18 0.0 Metagenome 3300043149 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - HN_080817 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043149 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.9002 -89.3556 47306341 132309 137 17 234 24 SRX9381644 Unrestricted 15.46 Metagenome 3300003185 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic Ocean affecting the dissolved organic carbon pool Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Surface_A/KNORR_S2/LV DOE Joint Genome Institute (JGI) 3300003185 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -38.0018 -44.9985 267071145 677144 420 11 730 18 SRX2566789 Unrestricted 0.0 Metagenome 3300039058 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - ADO1 Michigan State University 3300039058 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 46.0 -168.0 10339459 31041 0 0 0 0 0.0 Metagenome 3300001455 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 DOE Joint Genome Institute (JGI) 3300001455 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 12215134 39403 100 5 232 12 SRX2021683, SRX1985414 Unrestricted 0.0 Metagenome 3300070706 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_042-M-20170712-COMP-DNA1 3300070706 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 8970022 27747 64 7 109 11 0.0 Metagenome 3300044663 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Roots microbial communities from millet plant in semiarid region near Thies, Senegal - COA2E_TR DOE Joint Genome Institute (JGI) 3300044663 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Unclassified Roots Unclassified Root 14.75 -16.85 787707419 1186709 27 34 52 57 Unrestricted 26.28 Metagenome 3300048434 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_110727.NP1 DOE Joint Genome Institute (JGI) 3300048434 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 725564427 1717603 443 37 687 69 Unrestricted 17.72 Metagenome 3300018916 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - late stage, bundles v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018916 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 320132479 582321 270 6 432 12 0.0 Metagenome 3300031940 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2 DOE Joint Genome Institute (JGI) 3300031940 Metagenome Analysis spades v. 3.12.0 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 1202955554 3148390 1133 20 2010 44 SRX5809773 Unrestricted 7.49 Metagenome 3300027346 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F08 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027346 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 41998057 50187 43 0 51 0 SRX3195097 Unrestricted 0.0 Metagenome 3300027917 *Microbiome Permanent Draft Marine sediment microbial communities from White Oak River estuary, North Carolina Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027917 Metagenome Analysis spades v. 3.11.1 Yes Yes acidophile@gmail.com Brett Baker No Environmental Aquatic Intertidal zone Marine Estuary: Microbial mat Marine sediment 34.640199 -77.109447 6556162052 14936110 2915 32 5497 48 SRX3317013, SRX3317014 Unrestricted 0.0 Metagenome 3300036596 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_C2 DOE Joint Genome Institute (JGI) 3300036596 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 223688787 659583 429 26 746 50 SRX8397209 Unrestricted 4.98 Metagenome 3300027658 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus leukodermatus Group 2 BELIZE.1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027658 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 795897411 957504 9 3 7 6 SRX2712252 Unrestricted 0.0 Metagenome 3300042712 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from Clueless hydrothermal vent, Atlantic Ocean - BspSym_Cl_2_11-3 Re-assembly Max Planck Institute for Marine Microbiology 3300042712 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills -4.803266 -12.3718 223122396 201819 3 10 4 11 ERX3367184 0.0 Metagenome 3300021202 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Upa-Upasina ""control"", co15aic 200bp-microeukaryotes" University of New South Wales 3300021202 Metagenome Analysis IDBA-UD released by JGI data releasing policy Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Coelocarteria singaporensis (marine sponge) -9.828217 150.820517 120090 244 0 0 0 0 0.0 Metagenome 3300042278 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA MBR feed microbial communities from membrane bioreactor in Denver, Colorado, USA - FD_D235 DOE Joint Genome Institute (JGI) 3300042278 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Wastewater Mine water Industrial wastewater Produced water MBR feed 39.7823 -104.9101 654663383 976430 448 2 661 3 Unrestricted 21.85 Metagenome 3300069294 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_004-O-20210622-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069294 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 45.822941 -121.998707 1608202383 3813261 816 158 1538 262 0.0 Metagenome 3300043488 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-374 Genome Quebec 3300043488 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 53.560254 -114.321126 1298675444 2932855 552 217 971 342 0.0 Metagenome 3300043607 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 107-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043607 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9865 -107.0047 349304708 908788 363 15 633 17 Unrestricted 6.64 Metagenome 3300031644 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #5 DOE Joint Genome Institute (JGI) 3300031644 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5735 77.9231 709414261 1543423 312 5 538 9 SRX5650058 Unrestricted 18.98 Metagenome 3300046492 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere DOE Joint Genome Institute (JGI) 3300046492 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.588 -123.1924 783593748 1231198 270 74 467 83 Unrestricted 22.09 Metagenome 3300069473 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_002-M-20130701-COMP-DNA1 re-annotation Argonne National Laboratory 3300069473 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 37959357 95435 42 6 93 10 ERX2133930 0.0 Metagenome 3300030435 *Microbiome Permanent Draft Laboratory enrichment broth microbial communities from Maryland, USA Laboratory enrichment broth microbial communities from Maryland, USA - UPB4 U.S. Food and Drug Administration (FDA) 3300030435 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Lab enrichment Unclassified Defined media Unclassified Laboratory enrichment broth 10465838 16666 31 0 40 0 0.0 Metagenome 3300044722 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_12CS DOE Joint Genome Institute (JGI) 3300044722 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.3682 -106.1737 943170777 1563078 309 34 488 41 SRX20649965 Unrestricted 14.51 Metagenome 3300007633 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_D1_MG DOE Joint Genome Institute (JGI) 3300007633 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4965 -122.133 709727192 1281604 785 11 1232 21 SRX2523664 Unrestricted 0.0 Metagenome 3300038709 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample14 King Abdulaziz City for Science and Technology (KACST) 3300038709 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 18.34 40.44 39007834 94458 49 1 109 0 SRX1097580 0.0 Metagenome 2170459024 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - FD1 (NaCl 300g/L 5ml) 454 Life Sciences 2170459024 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.804241 -0.372114 438408759 1171570 597 321 1098 524 0.0 Metagenome 3300045430 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-556 Genome Quebec 3300045430 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 51.734097 -121.352237 923448053 1968826 351 118 629 203 0.0 Metagenome 3300049482 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Colorado, USA - gordoncreek_2019_sed_WHONDRS-S19S_0071 DOE Joint Genome Institute (JGI) 3300049482 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 40.012917 -105.458575 136236098 336128 436 41 875 49 Unrestricted 10.81 Metagenome 3300035635 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_1_8_6 mgh University of Alberta 3300035635 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 51572336 70287 27 1 40 2 0.0 Metagenome 3300059737 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1555B-02 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059737 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2024 -123.9409 188094881 397117 174 12 273 23 SRX2753738 Unrestricted 0.0 Metagenome 3300024038 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant dump, University of Wisconsin, Madison, United States - 3A200A (version 2) DOE Joint Genome Institute (JGI) 3300024038 Metagenome Analysis spades v. 3.11.1 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0758 -89.4125 93578028 111321 52 5 53 11 SRX4821910 Unrestricted 0.0 Metagenome 3300012789 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - DID2925_E24 MG DOE Joint Genome Institute (JGI) 3300012789 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 7592135 9196 10 0 18 0 SRX3564713 Unrestricted 0.0 Metagenome 3300011484 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01060 Weill Cornell Medical College 3300011484 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.67 -73.95 16629230 26766 20 0 37 0 SRX823022 0.0 Metagenome 3300013154 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100293 University of Pennsylvania 3300013154 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 16161387 38561 14 0 23 0 SRX756608 0.0 Metagenome 3300040630 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_004-M-20160823-COMP-DNA1 Battelle Memorial Institute 3300040630 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 1212939 3612 19 1 28 8 0.0 Metagenome 3300055349 *Microbiome Permanent Draft Co-cultures of unialgal cyanobacteria with co-existing heterotrophic bacteria from Dresden University of Technology, Germany Co-culture of unialgal cyanobacteria from Dresden University of Technology, Germany - Nostoc_74.5/Streptobacillus DOE Joint Genome Institute (JGI) 3300055349 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes paul.dagostino@tu-dresden.de Paul M. D'Agostino No Host-associated Microbial Unclassified Bacteria Unclassified Lab culture 51.028586 13.73135 39920364 39928 13 0 13 0 Restricted 34.77 Metagenome 3300029802 *Microbiome Permanent Draft Soil microbial communities from hillslopes of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 2-4-W_N DOE Joint Genome Institute (JGI) 3300029802 Metagenome Analysis spades v. 3.11.1 Yes Yes laurameredith@email.arizona.edu Laura Meredith No Engineered Artificial ecosystem Soil Mesocosm Unclassified soil 32.5789 -110.8512 5123720 15824 9 0 11 1 SRX5338612 Unrestricted 0.0 Metagenome 3300066284 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONZ_024-M-20170710-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066284 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.10077 -96.56309 166152547 458477 212 12 459 21 0.0 Metagenome 3300042552 *Microbiome Draft Microbial community shotgun study from Camalti Saltern, Izmir, Turkey Brine water microbial communities from a salt crystallizer pond in Camalti Saltern, Izmir, Turkey - 5KA spades_assembly Macrogen Inc 3300042552 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy No Yes albayrakece@gmail.com ece albayrak No Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Unclassified brine water 38.49 26.92 779401963 1657851 181 3 368 9 0.0 Metagenome 3300000502 *Microbiome Permanent Draft Salt marsh microbial communities from Little Sippewissett, Woods Hole, MA that are anoxygenic and photosynthetic Microbial Communities from Little Sippewissett Salt Marsh, Woods Hole, MA that are anoxygenic and photosynthetic, Photosynthetic Consortia grown using light of 590nm sample 2 Marine Biological Laboratory 3300000502 Metagenome Analysis No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Intertidal zone Marine Salt marsh Salt Marsh 41.5758508 -70.635807 77135858 146661 25 1 73 3 0.0 Metagenome 3300002780 *Microbiome Permanent Draft Piglet fecal microbial communities from UC Davis, California, USA, of a weaning piglet Piglet fecal microbial communities from UC Davis, California, USA, of a weaning piglet - sample 1 3300002780 Metagenome Analysis released by JGI data releasing policy No Yes sfrese@ucdavis.edu Steven Frese No Host-associated Mammals Large intestine Digestive system Fecal Piglet fecal 38.53 -121.76 281284854 978186 66 25 242 22 0.0 Metagenome 3300045554 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Cordillera ecozone, Canada - Lake 13-520 Genome Quebec 3300045554 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 60.125379 -130.926778 1075252156 2330752 543 146 787 250 0.0 Metagenome 3300014174 *Microbiome Permanent Draft Human lung microbial communities from intubated patients in Washington, D.C., USA Human lung microbial communities from intubated patients in Washington, D.C., USA - s002 The George Washington University 3300014174 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Trachea Respiratory system Mucus Human lung 1839806 4794 2 5 5 2 SRX682947 0.0 Metagenome 3300033621 *Microbiome Permanent Draft Metagenomic SGS 2x251 Staggered mock microbial community from ATCC, Manassa, VA, USA - ATCC2 Illumina 3300033621 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Laboratory 38.752303 -77.519989 27757879 34585 14 0 23 0 0.0 Metagenome 3300004782 *Microbiome Permanent Draft Wetland sediment microbial communities from St. Louis River estuary, Michigan under dissolved organic matter induced mercury methylation Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh DOE Joint Genome Institute (JGI) 3300004782 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes diana.nemergut@duke.edu, diana.nemergut@duke.edu.deleted Diana Nemergut Yes 29632744 Environmental Aquatic Wetlands Freshwater Sediment Wetland sediment 46.6972164 -92.3279105 1686840465 4855442 1390 56 3299 117 SRX2775503 Unrestricted 0.0 Metagenome 3300023084 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG (version 2) DOE Joint Genome Institute (JGI) 3300023084 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1009047538 1939275 406 39 580 64 SRX4072331 Unrestricted 27.86 Metagenome 3300045806 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - G2-R2-A DOE Joint Genome Institute (JGI) 3300045806 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3569 19.0504 506812023 935245 231 79 405 120 Unrestricted 9.02 Metagenome 3300044550 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_CSTR_126 DOE Joint Genome Institute (JGI) 3300044550 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 83695606 111961 82 2 93 3 SRX12655887 Unrestricted 129.91 Metagenome 3300015170 *Microbiome Permanent Draft Fossil microbial communities from human bone and soil samples from Teposcolula Yucundaa, Mexico Fossil microbial communities from human bone sample from Teposcolula Yucundaa, Mexico - TP48 Harvard University 3300015170 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Terrestrial Fossil Soil Unclassified Fossill 17.550556 -97.425556 162529266 445004 131 2 225 1 SRX286038 0.0 Metagenome 3300011777 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01058 Weill Cornell Medical College 3300011777 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.68 -73.97 40132550 57799 20 0 35 0 SRX823020 0.0 Metagenome 3300020137 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant dump, University of Wisconsin, Madison, United States - 2B0 DOE Joint Genome Institute (JGI) 3300020137 Metagenome Analysis spades v. 3.10.1 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0758 -89.4125 147375926 276652 146 14 236 13 SRX3988748 Unrestricted 17.95 Metagenome 3300025486 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR11_CSW11_NovA (SPAdes) DOE Joint Genome Institute (JGI) 3300025486 Metagenome Analysis spades v. 3.11.1 Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 14049486 20164 13 0 12 0 SRX3320909 Unrestricted 0.0 Metagenome 3300026210 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV251 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026210 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 293415778 630520 227 3 360 11 SRX2782446 Unrestricted 0.0 Metagenome 3300070814 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_046-M-20210310-COMP-DNA1 3300070814 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 21079 76 5 0 3 0 0.0 Metagenome 3300003428 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_04_M0_20 DOE Joint Genome Institute (JGI) 3300003428 Metagenome Analysis Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 106811917 244432 240 19 381 29 SRX2570590 Unrestricted 0.0 Metagenome 3300043570 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME20May2016-rr0892 DOE Joint Genome Institute (JGI) 3300043570 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 987618280 1435349 198 30 293 39 Unrestricted 24.21 Metagenome 3300005179 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_05_20cm DOE Joint Genome Institute (JGI) 3300005179 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2595903372 7152163 2501 70 4341 145 SRX2521037 Unrestricted 0.0 Metagenome 3300009111 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 DOE Joint Genome Institute (JGI) 3300009111 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 29146959 Environmental Aquatic Wetlands Freshwater Sediment Wetland 41.2239 -82.3039 2393161247 5051363 1628 13 2948 33 SRX2761076 Unrestricted 0.0 Metagenome 3300037089 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-2-X2 DOE Joint Genome Institute (JGI) 3300037089 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 560313888 1032119 294 2 476 2 SRX8138010 Unrestricted 9.35 Metagenome 3300017908 *Microbiome Permanent Draft Marine microbial communities from Caribbean coral reef seawater Marine microbial communities from Caribbean coral reef seawater, Florida Keys, United States - site GB18 University of Illinois, Urbana-Champaign 3300017908 Metagenome Analysis MEGAHIT v1.1.1-2-g02102e1 released by JGI data releasing policy No Yes lweber@whoi.edu Laura Weber No Environmental Aquatic Intertidal zone Marine Coral reef seawater 24.55228 -81.3813 203025526 276077 98 21 130 29 0.0 Metagenome 3300070289 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Florida, USA - DSNY_041-M-20180820-COMP-DNA1 3300070289 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 13587704 42457 90 5 193 8 0.0 Metagenome 3300045043 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 005-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300045043 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9574 -106.9862 469428608 1237737 495 19 889 31 Unrestricted 7.8 Metagenome 3300023100 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L013-104B-2 DOE Joint Genome Institute (JGI) 3300023100 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 593146743 1348064 580 50 973 94 SRX4798703 Unrestricted 10.55 Metagenome 3300051099 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Leeds, Wisconsin, USA - 45_781_WI_DR_1m_c3_T1_18O DOE Joint Genome Institute (JGI) 3300051099 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 43.30485 -89.3309 2750587710 4156120 737 21 1115 38 Restricted 15.78 Metagenome 3300014347 *Microbiome Permanent Draft Wastewater microbial communities from lab-scale CANDO bioreactor activated sludge, Evanston, Illinois, US Wastewater microbial communities from lab-scale CANDO bioreactor activated sludge, Evanston, Illinois, US - May_19_2015 Beijing Genomics Institute (BGI) 3300014347 Metagenome Analysis CLC Bio 6.0.2 released by JGI data releasing policy Yes Yes hangao2017@u.northwestern.edu Han Gao No Engineered Bioreactor Unclassified Aerobic Unclassified synthetic wastewater 42.057879 -87.67651 182219414 291963 34 2 67 2 0.0 Metagenome 3300014916 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 544_4M Beijing Genomics Institute (BGI) 3300014916 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 46398932 51818 28 0 27 2 ERX491192 0.0 Metagenome 3300042720 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - R_b24.1 Re-assembly Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042720 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1241 -89.1401 63070316 59406 4 3 8 3 SRX5234793 0.0 Metagenome 3300037067 *Microbiome Permanent Draft Leachate and groundwater microbial communities from a municipal landfill and adjacent aquifer in Southern Ontario, Canada Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - LW162 2017 University of Waterloo 3300037067 Metagenome Analysis spades v. 3.11.1 released by JGI data releasing policy No Yes laura.hug@uwaterloo.ca Laura Hug No Engineered Solid waste Unclassified Landfill Unclassified landfill leachate 43.442 -80.577 3 4543453413 9849082 2400 9 4554 9 0.0 Metagenome 3300057148 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2015-0029 DOE Joint Genome Institute (JGI) 3300057148 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.762 -83.33 571457588 1074563 347 120 521 188 Unrestricted 31.24 Metagenome 3300041850 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_16 MetaG AgResearch, New Zealand, Mosgeil 3300041850 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1353690896 2709932 245 28 1037 55 0.0 Metagenome 3300026699 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN574 (SPAdes) DOE Joint Genome Institute (JGI) 3300026699 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.070856 -96.582821 14015963 45437 53 4 94 5 SRX1986913 Unrestricted 0.0 Metagenome 3300070267 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Colorado, USA - CPER_047-M-20170710-COMP-DNA1 3300070267 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 11516906 33673 43 3 69 1 0.0 Metagenome 2084038019 *Microbiome Permanent Draft Hypersaline microbial communities from Antarctic Deep Lake Hypersaline microbial communities from Antarctic Deep Lake - 5mRS 0.1um DOE Joint Genome Institute (JGI) 2084038019 Metagenome Analysis Newbler and/or Velvet No Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli, Rick Cavicchioli; Michelle Allen Yes 24082106 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline -68.54 78.18 52160100 125908 51 9 76 0 0.0 Metagenome 3300009422 *Microbiome Permanent Draft Marine microbial communities from western Arctic Ocean Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 DOE Joint Genome Institute (JGI) 3300009422 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh Yes 30271971 Environmental Aquatic Oceanic Marine Unclassified Marine 75.235 -150.0691 1037457219 2052937 551 313 991 481 SRX2997310 Unrestricted 0.0 Metagenome 3300045963 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Microbial mat bacterial communities from wetland, North Slope, Alaska, United States - TFS_WetSedge10_9July2019 DOE Joint Genome Institute (JGI) 3300045963 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes demerson@bigelow.org David Emerson No Environmental Aquatic Wetlands Freshwater Unclassified wetland microbial mat 68.6254 -149.5895 1182359512 1873624 626 273 972 390 Unrestricted 16.29 Metagenome 7000000195 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159814214 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000195 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 104100037 182437 0 0 0 0 0.0 Metagenome 3300016652 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water reservoir in Singapore - WB_Site 5a, Aug Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016652 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Lake Freshwater Unclassified freshwater 1.35 103.87 53141319 61561 6 2 7 1 0.0 Metagenome 3300020686 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 12AUG2008 epilimnion DOE Joint Genome Institute (JGI) 3300020686 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 49426884 110703 44 9 56 14 Unrestricted 0.0 Metagenome 3300037316 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 P1 20-24 DOE Joint Genome Institute (JGI) 3300037316 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0466 806616154 1539975 316 3 511 11 SRX9169461 Unrestricted 8.91 Metagenome 3300044710 *Microbiome Permanent Draft Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA - SWaN 13 years plot 8 DOE Joint Genome Institute (JGI) 3300044710 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes luizdomeignoz@gmail.com Luiz Domeignoz Horta No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 42.303 -72.1228 1851342415 3019253 341 40 547 45 SRX15792985 Unrestricted 12.73 Metagenome 3300065590 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 786 in Hanna, Alberta, Canada - S00JY_0099 Microbiome Insights 3300065590 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.31527169 -112.0508909 131854985 194960 43 2 97 4 0.0 Metagenome 3300003821 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE22May08 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003821 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 22602139 52303 83 68 112 132 SRX2565360 Unrestricted 0.0 Metagenome 3300013264 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00281 Weill Cornell Medical College 3300013264 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.73 -73.99 25271630 42300 24 0 27 0 SRX822254 0.0 Metagenome 3300012926 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_16fungal (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300012926 Metagenome Analysis MEGAHIT v. 1.0.6 released based on JGI ITS Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 2920460397 6353879 1280 136 2381 212 SRX7205651, SRX7205650, SRX7205653, SRX7205652, SRX7205646, SRX7205645, SRX7205648, SRX7205647, SRX7205649 Unrestricted 0.0 Metagenome 3300000397 *Microbiome Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring microbial streamer communities from Conch Spring, Yellowstone National Park, USA - C T=80-84 v1 DOE Joint Genome Institute (JGI) 3300000397 Metagenome Analysis released based on JGI ITS Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.5564135 -110.8321631 8 33484433 85714 18 0 18 1 Unrestricted 0.0 Metagenome 3300007002 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 764143897 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007002 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 4873111 9165 12 0 12 0 0.0 Metagenome 3300026855 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgLMA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026855 Metagenome Analysis spades v. 3.11.1 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 41248312 138954 120 3 232 6 SRX2521232 Unrestricted 0.0 Metagenome 3300051847 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Schonbrunner Wald, Bavaria, Germany - BW_CL_031D DOE Joint Genome Institute (JGI) 3300051847 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.907397 13.559695 814662663 1840380 320 9 645 11 Unrestricted 9.7 Metagenome 3300046048 *Microbiome Permanent Draft Sediment microbial communities from various rivers and their estuaries in the United States Sediment microbial communities from Beaver Creek estuary, Washington, United States - BTRS19_Sengupta_1S DOE Joint Genome Institute (JGI) 3300046048 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sg.aditi@gmail.com Aditi Sengupta No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.9059 -123.9804 3252427325 5528814 1358 88 2287 119 Unrestricted 18.44 Metagenome 3300022939 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG (version 2) DOE Joint Genome Institute (JGI) 3300022939 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 996620040 1985984 444 44 694 72 SRX4071913 Unrestricted 23.54 Metagenome 3300012206 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG DOE Joint Genome Institute (JGI) 3300012206 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.5673 -123.4758 2791608377 5573823 1736 57 3032 111 SRX3372769 Unrestricted 0.0 Metagenome 3300005835 *Microbiome Permanent Draft Biogas reactor microbial communities Biogas reactor microbial communities from SLU, Alnarp, Sweden - PacBio 1 to 3 kb reads Norwegian Sequencing Centre (NSC) 3300005835 Metagenome Analysis MIRA released per JGI data release policy No Yes phillip.b.pope@gmail.com Phillip Pope, Phil B. Pope No Engineered Bioreactor Marine sediment inoculum Continuous culture Biogas reactor 59.8152338 17.6620518 70773463 148272 96 0 134 0 0.0 Metagenome 3300045131 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater bacterial communities from Lake Mendota, Wisconsin, United States - ME_2020-10-08_23.5m_Bacteria_A DOE Joint Genome Institute (JGI) 3300045131 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 1321963061 1985322 616 16 910 31 Unrestricted 14.63 Metagenome 3300032070 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_20 DOE Joint Genome Institute (JGI) 3300032070 Metagenome Analysis spades v. 3.12.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5094 -110.5094 1886052505 3366970 1131 2 1686 7 SRX6412633 Unrestricted 20.09 Metagenome 3300028038 *Microbiome Permanent Draft Soil microbial communities from hillslopes of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-2-E_N DOE Joint Genome Institute (JGI) 3300028038 Metagenome Analysis spades v. 3.11.1 Yes Yes laurameredith@email.arizona.edu Laura Meredith No Engineered Artificial ecosystem Soil Mesocosm Unclassified soil 32.5788 -110.8509 40120856 99504 48 0 87 0 SRX5246421 Unrestricted 151.68 Metagenome 2140918027 *Microbiome Permanent Draft Hypersaline microbial communities from Antarctic Deep Lake Hypersaline microbial communities from Antarctic Deep Lake - 36m 3.0um, 0.8um, 0.1um pool DOE Joint Genome Institute (JGI) 2140918027 Metagenome Analysis Newbler v. 2.5 No Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli, Rick Cavicchioli; Michelle Allen Yes 24082106 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline -68.54 78.18 190563105 475716 169 7 266 0 0.0 Metagenome 3300037833 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Chroococcus sp. CMT-3BRIN-NPC107 and co-occurring heterotrophs from soil crust from Clark Mountains Wilderness, California, United States - 20190130_11 DOE Joint Genome Institute (JGI) 3300037833 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Soil crust Soil Biological Soil crust 35.5039 -115.6922 145117573 185108 60 1 71 1 SRX9168371 Unrestricted 95.66 Metagenome 3300001844 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM35, ROCA_DNA220_0.2um_bLM_C_3a 3300001844 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Lotic Freshwater Unclassified Marine plankton -1.519367 -48.91795 117652528 282404 32 8 133 19 0.0 Metagenome 3300006017 *Microbiome Permanent Draft Rhizosphere and bulk soil microbial communities from Harvard Forest, USA Rhizosphere microbial communities from Harvard Forest, USA - 6Rhizosphere_unsorted metaG DOE Joint Genome Institute (JGI) 3300006017 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes deangelis@microbio.umass.edu Kristen M DeAngelis PhD, Kristen M. DeAngelis PhD No Host-associated Plants Rhizosphere Roots Soil rhizosphere 42.5502 -72.1737 28678267 120818 40 4 84 13 SRX2718010 Unrestricted 0.0 Metagenome 3300013531 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Human oral microbial communities from various locations - University of British Columbia - SCG21 University of British Columbia 3300013531 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Unclassified Human oral 100427 282 0 0 1 0 SRX142959 0.0 Metagenome 3300013817 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00846 Weill Cornell Medical College 3300013817 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.71 -74.0 14131297 22957 11 0 14 0 SRX822812 0.0 Metagenome 3300049250 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA11 DOE Joint Genome Institute (JGI) 3300049250 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 356536228 839426 349 6 623 13 Unrestricted 7.45 Metagenome 2189573003 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - FE2 (NaCl 30g/L 5ml) 454 Life Sciences 2189573003 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.804241 -0.372114 315225255 861585 378 18 734 33 0.0 Metagenome 3300043125 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10WP15 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043125 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 87125717 222484 127 1 209 4 SRX8379130 Unrestricted 13.39 Metagenome 3300022705 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1OPP3 JM117 AGRF 3300022705 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 56343571 96730 52 0 70 0 0.0 Metagenome 3300038855 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample19 King Abdulaziz City for Science and Technology (KACST) 3300038855 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 20.31 38.46 35382802 102209 52 0 86 0 SRX1097585 0.0 Metagenome 3300054044 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin10_10_metaG re-annotation DOE Joint Genome Institute (JGI) 3300054044 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1045444893 2178961 483 55 794 95 SRX3293030 0.0 Metagenome 3300060353 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 DOE Joint Genome Institute (JGI) 3300060353 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.407926 -82.180036 2158095369 3587895 796 23 1389 49 Restricted 14.68 Metagenome 3300027711 *Microbiome Permanent Draft Agricultural soil microbial communities from Utah and Georgia to study Nitrogen management Agricultural soil microbial communities from Utah to study Nitrogen management - Steer compost 2011 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027711 Metagenome Analysis spades v. 3.11.1 Yes Yes jeanette.norton@usu.edu Jeanette Norton No Environmental Terrestrial Agricultural land Soil Unclassified Agricultural soil 41.7655 -111.8143 733655123 1251363 884 23 1243 32 SRX2924335 Unrestricted 0.0 Metagenome 3300035141 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0608U02 DOE Joint Genome Institute (JGI) 3300035141 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8973 -97.0409 524354242 1204384 470 21 813 28 SRX8259516 Unrestricted 7.15 Metagenome 3300014980 *Microbiome Permanent Draft Danish lakes Microbial communities Depth profiles Lake Almind and Hund Sediment microbial communities from Lake Almind, Silkeborg, Region Midtjylland, Denmark - ALS_02.07.12_sediment_0-5cm metaSPAdes assemblies Odense University Hospital 3300014980 Metagenome Analysis metaSPAdes 3.7.1 released by JGI data releasing policy Yes Yes atreusch@biology.sdu.dk Alexander Treusch No Environmental Aquatic Lake Freshwater Sediment Sediment 56.148 9.546 2212136 9866 7 0 8 0 0.0 Metagenome 3300046740 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 soil DOE Joint Genome Institute (JGI) 3300046740 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121204 -123.271338 5.47 1327090861 2154200 388 26 663 29 Unrestricted 12.95 Metagenome 3300046362 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_151 DOE Joint Genome Institute (JGI) 3300046362 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9703 -106.997 105349241 267649 458 8 948 7 Restricted 0.0 Metagenome 3300070696 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_049-M-20171107-COMP-DNA1 3300070696 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 978951007 2474973 539 18 1120 30 0.0 Metagenome 3300008726 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 764669880 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008726 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 68912959 89931 68 0 112 0 0.0 Metagenome 3300035214 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2010_500m DOE Joint Genome Institute (JGI) 3300035214 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 50.0 -145.0 613776004 1499593 413 40 710 57 SRX8188370 Unrestricted 16.65 Metagenome 3300068252 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210615_19_05 DOE Joint Genome Institute (JGI) 3300068252 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 371132865 586376 192 102 268 128 Unrestricted 0.0 Metagenome 3300026286 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 2_5/13/2013_ DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026286 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 208284685 308722 126 13 162 19 SRX2714413 Unrestricted 0.0 Metagenome 3300000840 *Microbiome Draft Wetland microbial communities from Twitchell Island in the Sacramento Delta Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk v6 (version 6) DOE Joint Genome Institute (JGI) 3300000840 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes stringe@lbl.gov Susannah Tringe Yes 25991679 Environmental Aquatic Wetlands Marine Sediment Wetland 38.107057 -121.647578 120209763 331295 364 4 662 12 Unrestricted 0.0 Metagenome 3300004047 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D1 DOE Joint Genome Institute (JGI) 3300004047 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.000637 -121.624207 530897678 1855461 604 11 1388 16 SRX7143401 Unrestricted 0.0 Metagenome 3300032212 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-week pyrite DOE Joint Genome Institute (JGI) 3300032212 Metagenome Analysis spades v. 3.13.0 Yes Yes jbeam@bigelow.org; demerson@bigelow.org Jake Beam; David Emerson No Environmental Aquatic Coastal Marine Sediment microbial mat 43.8603 -69.5781 915739118 1729565 640 92 1017 134 SRX5822399 Unrestricted 26.95 Metagenome 3300056831 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Activated sludge microbial communities from bioreactor in WWTP, Madison, WI, USA - RS_2021-01-20_SampleA DOE Joint Genome Institute (JGI) 3300056831 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.03331 -89.35633 1310075056 1299975 452 32 471 30 Unrestricted 13.04 Metagenome 3300012133 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT121_2 DOE Joint Genome Institute (JGI) 3300012133 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9224 -106.9512 100010699 246658 205 31 471 49 SRX3368762 Unrestricted 0.0 Metagenome 3300025410 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH25Aug08 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025410 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 156822095 330259 109 9 145 20 SRX2565523 Unrestricted 0.0 Metagenome 7000000727 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000727 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 112258145 207346 0 0 0 0 0.0 Metagenome 3300029540 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P049V6 Beijing Genomics Institute (BGI) 3300029540 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 142469559 181314 116 0 165 0 0.0 Metagenome 3300041463 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_7 MetaG AgResearch, New Zealand, Mosgeil 3300041463 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Rhizoplane Roots Dairy farm pasture -43.648506 172.343549 633461293 1471984 200 24 659 64 0.0 Metagenome 3300051390 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - HDCcR2D-21 DOE Joint Genome Institute (JGI) 3300051390 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 929988438 1647633 849 76 1273 119 Unrestricted 16.48 Metagenome 3300020299 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000214 (ERX555923-ERR599016) CEA Genoscope 3300020299 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -16.9675 53.9199 171047326 486622 133 8 264 10 0.0 Metagenome 3300028414 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 33D DOE Joint Genome Institute (JGI) 3300028414 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 315320267 604646 171 43 240 64 SRX5171614 Unrestricted 21.52 Metagenome 3300006321 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160380657 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006321 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 141069423 191518 122 0 168 0 0.0 Metagenome 3300003223 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 DOE Joint Genome Institute (JGI) 3300003223 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 51.62 -128.09 53352431 142636 173 23 250 47 SRX2575215 Unrestricted 0.0 Metagenome 3300006754 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG DOE Joint Genome Institute (JGI) 3300006754 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.205 -77.515 624766230 1370303 76 1 121 1 SRX2926811 Unrestricted 0.0 Metagenome 2199352018 *Microbiome Permanent Draft Saline water microbial communities from a Tibetan plateau lake Saline water microbial communities from Qinghai Lake, Tibetan Plateau -Sample 11630 University of Illinois, Urbana-Champaign 2199352018 Metagenome Analysis Newbler released per JGI data release policy No Yes wtliu@illinois.edu Wen-Tso Liu No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline water 36.381 100.218 36961477 71397 0 0 0 0 0.0 Metagenome 3300049426 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River, Colorado, USA - RiverWater_Short DOE Joint Genome Institute (JGI) 3300049426 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 271608800 672533 335 8 452 13 Restricted 14.18 Metagenome 3300024240 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T25 DOE Joint Genome Institute (JGI) 3300024240 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 327506391 697680 334 2 518 3 SRX4415304, SRX7705520 Unrestricted 0.0 Metagenome 3300001113 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP2252 DOE Joint Genome Institute (JGI) 3300001113 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 10.09 -99.25 34500678 72987 50 16 87 22 SRX1982073 Unrestricted 0.0 Metagenome 3300014890 *Microbiome Permanent Draft Human bile duct microbial communities from gallstone patients in Hangzhou, China Human bile duct microbial communities from gallstone patients in Hangzhou, China - B5_bile Beijing Institution of Radiation Medicine 3300014890 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Biliary tract Digestive system Bile ducts: Bile Human bile duct 9082876 12485 8 4 8 3 SRX957023, SRX957036 0.0 Metagenome 3300025734 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG14_big_fil_post_rev_8/21/14_0.10 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025734 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 1631256 5578 6 0 18 0 SRX3348156 Unrestricted 0.0 Metagenome 3300026072 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLC_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026072 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.209923 -122.033409 104468933 258083 169 5 305 6 SRX7182423 Unrestricted 0.0 Metagenome 3300059776 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1371A-3 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059776 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2342 -123.9167 34291988 87156 97 38 180 65 SRX2753608 Unrestricted 0.0 Metagenome 3300011246 *Microbiome Permanent Draft Metagenomes of Arctic soils Glacer surface microbial communities from an Arctic cyroconite hole, Midre Lovenbreen, Svalbard, Norway (Sample 22) University of Bristol 3300011246 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes EAEloeFadrosh@lbl.gov; maisie.nash@bristol.ac.uk; ama@envs.au.dk Emiley Eloe-Fadrosh; Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Aquatic Ice Freshwater Cryoconite Cryoconite hole, glacier surface 79.48416667 12.09222222 61826702 146961 114 9 164 18 0.0 Metagenome 3300048929 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 DOE Joint Genome Institute (JGI) 3300048929 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Unclassified Roots Unclassified Root 42.40581 -85.40228 1848865643 2802116 601 102 839 148 Unrestricted 20.0 Metagenome 3300022732 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU1 DOE Joint Genome Institute (JGI) 3300022732 Metagenome Analysis spades v. 3.11.1-check Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Host-associated Plants Rhizosphere Roots Unclassified rhizosphere 49.043 13.6183 39196402 95234 62 13 122 23 SRX4456545 Unrestricted 8.22 Metagenome 3300051672 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Schonbrunner Wald, Bavaria, Germany - BW_CO_033D DOE Joint Genome Institute (JGI) 3300051672 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.906539 13.558004 888478484 2036526 378 36 761 48 Unrestricted 8.89 Metagenome 3300035033 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - C6-7 Autonomous University of Barcelona 3300035033 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 107358905 445760 1010 0 1948 1 0.0 Metagenome 3300037564 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C6-9B DOE Joint Genome Institute (JGI) 3300037564 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 544934005 1599655 708 21 1336 38 SRX9166486 Unrestricted 5.74 Metagenome 3300027551 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Olavius algarvensis symbiont microbial communities from Tuscany, Italy - Type A ELBA extract 1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027551 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 42.8072 10.1411 658713122 711504 10 1 9 5 SRX2557365 Unrestricted 0.0 Metagenome 3300012961 *Microbiome Permanent Draft Amended soil microbial communities from New York, USA to study carbon cycling Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG DOE Joint Genome Institute (JGI) 3300012961 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes twhitman@wisc.edu Thea Whitman No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.4531 -76.3842 2817164667 6731954 2967 150 5289 297 SRX3566485 Unrestricted 5.01 Metagenome 3300011590 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00579 Weill Cornell Medical College 3300011590 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.97 26269870 37950 12 0 18 0 SRX822546 0.0 Metagenome 3300064825 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0690 Microbiome Insights 3300064825 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.33140284 -114.1207075 159489570 222771 61 2 98 2 0.0 Metagenome 3300007035 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 158458797 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007035 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 29260936 35898 38 0 53 0 0.0 Metagenome 3300038699 *Microbiome Permanent Draft Genetically engineered switchgrass root microbial communities from Knoxville, USA Genetically engineered switchgrass root microbial communities from Knoxville, USA - plot26 University of Tennessee 3300038699 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Host-associated Plants Rhizosphere Roots Soil Plant roots 35.90441 -83.953801 27655920 71642 102 6 220 6 SRX649005, SRX649004, SRX649006 0.0 Metagenome 3300042028 *Microbiome Permanent Draft Mollusc gills microbial communities from various hydrothermal vent in Atlantic Ocean Mollusc gills microbial communities from Lilliput hydrothermal vent, Atlantic Ocean - BspSym_Li_3_10-5 Max Planck Institute for Marine Microbiology 3300042028 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills -9.5481672 -13.2088327 149338069 172835 2 2 4 3 ERX3367178 0.0 Metagenome 3300037231 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPON2-1-D DOE Joint Genome Institute (JGI) 3300037231 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3578 19.0528 796486630 1328807 256 33 390 37 SRX8167144 Unrestricted 14.9 Metagenome 3300040429 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Mid-Atlantic, VA, USA - BLAN_001-M-20170713-COMP-DNA1 Battelle Memorial Institute 3300040429 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Farm Terrestrial soil 39.06026 -78.07164 4458950 13851 43 0 67 1 0.0 Metagenome 3300002804 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A1-10 DOE Joint Genome Institute (JGI) 3300002804 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 411816 1419 17 0 41 0 SRX1991104 Unrestricted 0.0 Metagenome 3300012041 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT754_2 DOE Joint Genome Institute (JGI) 3300012041 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8894 -106.9076 418291000 947445 440 35 953 63 SRX3539214 Unrestricted 0.0 Metagenome 3300044786 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_22 DOE Joint Genome Institute (JGI) 3300044786 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 1022654167 2215444 634 5 1110 6 Unrestricted 8.73 Metagenome 3300014684 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01346 Weill Cornell Medical College 3300014684 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.85 -73.82 37020365 61151 25 0 39 0 SRX823286 0.0 Metagenome 3300001542 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Nasutitermes corniger crop gut microbial community from laboratory colony in Florida, USA - Nc150C DOE Joint Genome Institute (JGI) 3300001542 Metagenome Analysis Yes Yes brune@mpi-marburg.mpg.de Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 26.0625 -80.2332 338005394 1091485 16 12 29 9 SRX2553489 Unrestricted 0.0 Metagenome 3300005936 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKS DOE Joint Genome Institute (JGI) 3300005936 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli, Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Lake water -68.4725 78.188 777839517 2019474 691 0 1196 0 SRX2839723 Unrestricted 0.0 Metagenome 3300005771 *Microbiome Permanent Draft Human lung microbial communities from healthy (non-smokers and smokers) and HIV infected subjects Human lung microbial communities from HIV infected subject HIV091228-1 New York University Langone Medical Center 3300005771 Metagenome Analysis Shotgun released per JGI data release policy No Yes leopoldo.segal@nyumc.org Leopoldo N Segal No Host-associated Mammals: Human Lung Respiratory system Unclassified Lung Microbiome 40.7127 -74.0059 24927442 73691 2 2 5 1 0.0 Metagenome 7000000637 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human palatine tonsils microbial communities from NIH, USA - visit 2, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000637 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Tonsils Lymphatic system Palatine/Faucial Human 12539859 24806 0 0 0 0 SRX024935 0.0 Metagenome 3300046816 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 soil DOE Joint Genome Institute (JGI) 3300046816 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121413 -123.269199 5.06 1269311996 2065339 344 20 593 24 Unrestricted 13.12 Metagenome 3300025920 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025920 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 3038965429 7300937 1229 113 2473 188 SRX2740159 Unrestricted 0.0 Metagenome 3300035404 *Microbiome Permanent Draft Extreme environments viral communities from various locations Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 538_ROV-KIPs DOE Joint Genome Institute (JGI) 3300035404 Metagenome Analysis spades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified filtered seawater 13.3447 -44.9133 154716194 436035 21 8 36 8 SRX7709952 Unrestricted 67.34 Metagenome 3300025495 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 415-2 deep-092012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025495 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 248128595 516906 206 2 348 5 SRX1987672 Unrestricted 0.0 Metagenome 3300032064 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17 DOE Joint Genome Institute (JGI) 3300032064 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1172898302 3055259 380 8 756 4 SRX5817649 Unrestricted 13.74 Metagenome 3300019710 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLC_5-6_MG DOE Joint Genome Institute (JGI) 3300019710 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 104989930 257831 210 12 383 29 SRX3983489 Unrestricted 3.61 Metagenome 3300042117 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0415F_E14_082316_1937 DOE Joint Genome Institute (JGI) 3300042117 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.1836 -97.9974 101469451 303880 219 7 420 10 Unrestricted 6.28 Metagenome 3300012825 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched millipede-associated microbial communities from UW Madison campus, WI, USA - HID1971K_E1 MG DOE Joint Genome Institute (JGI) 3300012825 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 93334750 118212 84 0 106 0 SRX3564585 Unrestricted 0.0 Metagenome 3300040294 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Abby Road, Pacific Northwest, WA, USA - ABBY_001-M-20170607-COMP-DNA1 Battelle Memorial Institute 3300040294 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.76243 -122.33033 6118095 17874 16 2 44 6 0.0 Metagenome 3300038642 *Microbiome Permanent Draft Seawater archaeal communities from North Pacific Subtropical Gyre, Pacific Ocean Seawater archaeal communities from North Pacific Subtropical Gyre, Pacific Ocean - 450_0_3 Massachusetts Institute of Technology 3300038642 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Seawater 24.4008 -157.8668 2619749 6773 13 1 23 1 0.0 Metagenome 3300051368 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - ATCR2C-21 DOE Joint Genome Institute (JGI) 3300051368 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 114813930 188528 103 4 162 7 Unrestricted 144.41 Metagenome 3300035062 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - T5-0 Autonomous University of Barcelona 3300035062 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 110336791 443401 1105 0 2045 1 0.0 Metagenome 3300040473 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 047_R1_022417 University of Maryland 3300040473 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.96986389 25.65290556 4070165 10423 16 2 32 2 0.0 Metagenome 3300025200 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from South of Eden, South Pacific Ocean - MP1434 (SPAdes) DOE Joint Genome Institute (JGI) 3300025200 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -38.64 150.41 48745839 116534 77 36 118 58 SRX1982590 Unrestricted 0.0 Metagenome 3300026956 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - Naphthalene biodegradation metagenome 13C5doseC (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026956 Metagenome Analysis spades v. 3.11.1 Yes Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.292222 -73.604444 1155676 4188 5 0 1 0 Unrestricted 0.0 Metagenome 3300008636 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 765094712 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008636 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 127022988 160097 90 1 141 0 0.0 Metagenome 3300011755 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00577 Weill Cornell Medical College 3300011755 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.75 -73.97 30065761 50793 22 0 43 0 SRX822544 0.0 Metagenome 3300032323 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains Ecozone, Canada - Lake 08-193 Genome Quebec 3300032323 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.204558 -81.052039 572204415 1105868 317 55 458 99 0.0 Metagenome 3300022763 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S9 Version 2 University of New South Wales 3300022763 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 39952760 66771 20 4 26 7 0.0 Metagenome 3300047528 *Microbiome Permanent Draft Floating fern leaf microbial communities from various locations Floating fern leaf microbial communities from Lima, Peru - 1545_IRRI DOE Joint Genome Institute (JGI) 3300047528 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dave.armitage@gmail.com David Armitage No Host-associated Plants Phylloplane/Leaf Phyllosphere Endophytes Leaf -12.2076 -76.9929 33880159 37757 14 3 14 3 Unrestricted 572.68 Metagenome 3300070752 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Marvin Klemme Range Research Station, Oklahoma, USA - OAES_042-M-20180529-COMP-DNA1 3300070752 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 156682288 431297 189 2 417 9 0.0 Metagenome 3300002535 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert microbial communities from Antarctic Dry Valleys - UQ836 DOE Joint Genome Institute (JGI) 3300002535 Metagenome Analysis Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert -78.0482 164.1133 19420373 20000 12 0 14 1 SRX3329715 Unrestricted 0.0 Metagenome 3300013345 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100295 University of Pennsylvania 3300013345 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 20021870 39053 11 0 17 0 SRX756606 0.0 Metagenome 3300003279 *Microbiome Permanent Draft Down-flow hanging sponge reactor microbial communities from the University of Illinois at Urbana-Champaign, USA Down-flow hanging sponge reactor microbial communities from the University of Illinois at Urbana-Champaign, USA - U3-798FC-DHS 3300003279 Metagenome Analysis Newbler released by JGI data releasing policy No Yes nkim41@illinois.edu Kim, Na Kyung Kim No Engineered Bioreactor Sludge DHS reactor Unclassified Down-flow hanging sponge reactor 40.114056 -88.226756 8.5 177699159 172153 54 10 77 10 0.0 Metagenome 3300029977 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-024-1 DOE Joint Genome Institute (JGI) 3300029977 Metagenome Analysis spades v. 3.12.0 Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.5734 -110.795 587535865 1025929 455 1 530 8 SRX5356223 Unrestricted 97.56 Metagenome 3300014250 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 260_L4_2014-7-11 San Diego State University 3300014250 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 3683655 13352 18 6 34 24 0.0 Metagenome 3300021256 *Microbiome Draft Cattle and sheep rumen microbial communities from New Zealand, for comparative studies Sheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly DOE Joint Genome Institute (JGI) 3300021256 Metagenome Analysis SPADES 3.11.0 released per Natalia and Tijana Yes Yes cfan@lbl.gov; NNIvanova@lbl.gov Hei Fan; Natalia Ivanova No Host-associated Mammals Stomach Digestive system Rumen Cattle and sheep rumen -42.26 171.6 2245364709 3983305 1578 16 2520 18 0.0 Metagenome 3300002148 *Microbiome Permanent Draft Hypersaline viral and bacterial communities from Bras del Port, Santa Pola, Spain Hypersaline bacterial communities from Bras del Port, Santa Pola, Spain - Bacteroidetes AB577-P23 Lifesequencing S.L. 3300002148 Metagenome Analysis SOAP released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Unclassified Hypersaline samples 38.184722 -0.629444 342247 708 6 0 2 0 0.0 Metagenome 3300043380 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 183-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043380 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.857 -107.0916 409999540 1160198 458 29 821 68 Unrestricted 6.65 Metagenome 3300069630 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_051-O-20160822-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069630 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 102997534 300734 157 30 329 65 0.0 Metagenome 3300018482 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0919_02_20cm DOE Joint Genome Institute (JGI) 3300018482 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 3949967253 9153367 2700 115 4547 154 SRX3105584 Unrestricted 0.0 Metagenome 7000000186 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 809635352 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000186 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 102380872 203719 0 0 0 0 0.0 Metagenome 3300013270 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00289 Weill Cornell Medical College 3300013270 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -74.0 32732197 57911 35 0 52 0 SRX822262 0.0 Metagenome 3300000716 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 66 DOE Joint Genome Institute (JGI) 3300000716 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 12978623 38383 41 0 69 0 SRX4341315 Unrestricted 0.0 Metagenome 3300020695 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 15JUL2008 epilimnion DOE Joint Genome Institute (JGI) 3300020695 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 75674208 157046 67 17 111 21 Unrestricted 0.0 Metagenome 3300045225 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_5_B DOE Joint Genome Institute (JGI) 3300045225 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 152772174 181677 101 1 98 1 Unrestricted 146.33 Metagenome 3300012480 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.yng.040610 DOE Joint Genome Institute (JGI) 3300012480 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 77959878 210889 182 11 340 19 SRX3527491 Unrestricted 0.0 Metagenome 3300011568 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00977 Weill Cornell Medical College 3300011568 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.62 -73.82 22097432 36281 17 0 25 0 SRX822939 0.0 Metagenome 3300037797 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVT2_Sep_35_v DOE Joint Genome Institute (JGI) 3300037797 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2150266146 3490059 712 15 1135 25 SRX9163013 Unrestricted 16.12 Metagenome 3300055462 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.4W.8 SIP fraction DOE Joint Genome Institute (JGI) 3300055462 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 334845384 601711 195 9 296 21 Unrestricted 15.35 Metagenome 3300034101 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107 DOE Joint Genome Institute (JGI) 3300034101 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1704263955 3430187 871 97 1303 143 SRX7622083 Unrestricted 11.95 Metagenome 3300020242 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine prokaryotic communities collected during Tara Oceans survey from station TARA_076 - TARA_B100000513 (ERX555995-ERR599010) CEA Genoscope 3300020242 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -21.0073 -35.3344 72135838 214309 116 23 213 59 0.0 Metagenome 3300022176 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022176 Metagenome Analysis spades v. 3.11.1-check Yes Yes bcampb7@clemson.edu Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 38.9819 -76.3716 158625612 442431 2 1 2 0 SRX2935246, SRX3362802, SRX3362803 Unrestricted 0.0 Metagenome 3300009318 *Microbiome Permanent Draft Sediment microbial communities from Kanawha River near Charleston, West Virginia, USA Sediment microbial communities from Kanawha River near Charleston, West Virginia, USA - RST Oklahoma Medical Research Foundation 3300009318 Metagenome Analysis Ray Meta v. 2.0.1 Kmer 31 released per JGI data release policy No Yes huberdh@wvstateu.edu David Huber No Environmental Aquatic River Freshwater Sediment sediment 38.372804 -81.696812 4950994 26490 11 0 40 0 0.0 Metagenome 3300002489 *Microbiome Permanent Draft Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland, that are sulfate-reducing Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland - cluster_20_Desulfobulbaceae 3300002489 Metagenome Analysis Ray, k=41 released by JGI data releasing policy No Yes rizlan.bernier-latmani@epfl.ch Rizlan Bernier-Latmani No Environmental Terrestrial Clay Deep subsurface Unclassified Deep subsurface 47.379 7.1648 7.5-8.5 6515854 6124 5 0 5 0 0.0 Metagenome 3300026877 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_host_9_15 (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300026877 Metagenome Analysis spades v. 3.11.1 Yes Yes jim.fredrickson@pnnl.gov; binskeep@montana.edu Jim Fredrickson; William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.733 -110.709 3 85211144 153056 45 0 57 0 SRX2939926 Unrestricted 0.0 Metagenome 3300011515 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00746 Weill Cornell Medical College 3300011515 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.8 -73.94 16405257 22425 10 1 15 1 SRX822713 0.0 Metagenome 3300020424 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000242 (ERX556056-ERR599138) CEA Genoscope 3300020424 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -9.4112 66.3281 1030600519 2614842 442 17 805 43 0.0 Metagenome 3300046678 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere DOE Joint Genome Institute (JGI) 3300046678 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1216 -123.2694 1021744043 1677406 309 76 489 91 Unrestricted 13.28 Metagenome 3300042445 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jun2001-rd0012 DOE Joint Genome Institute (JGI) 3300042445 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 838795897 1269599 269 36 368 52 Unrestricted 22.51 Metagenome 3300001784 *Microbiome Permanent Draft Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA - Biofuel metagenome 4 DOE Joint Genome Institute (JGI) 3300001784 Metagenome Analysis Yes Yes hrbeller@lbl.gov Harry Beller Yes 27506494, 29556105 Engineered Bioreactor Unclassified Anaerobic Unclassified Bioreactor 37.8754404 -122.2477251 292865821 348686 234 0 282 1 SRX1671042, SRX1671041, SRX1671040, SRX1671039, SRX1671038, SRX1671037 Unrestricted 0.0 Metagenome 3300046333 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_108 DOE Joint Genome Institute (JGI) 3300046333 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9802 -106.9905 203359917 507203 584 168 1093 229 Restricted 0.0 Metagenome 3300002467 *Microbiome Permanent Draft Bathymodiolus Puteoserpentis microbial communities from the Logatchev hydrothermal field, Atlantic Ocean Bathymodiolus Puteoserpentis microbial communities from the Logatchev hydrothermal field, Atlantic Ocean Association Nationale Recherche Technologie 3300002467 Metagenome Analysis released by JGI data releasing policy No Yes aassie@mpi-bremen.de Adrien Assi?, Adrien Assie No Host-associated Mollusca Unclassified Unclassified Unclassified Bathymodiolus Puteoserpentis associated 14.7525 -44.979333 2865751 2953 3 0 3 0 0.0 Metagenome 3300029856 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37285 Beijing Genomics Institute (BGI) 3300029856 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 174500167 228082 160 0 208 0 0.0 Metagenome 3300028343 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Club lake, Antarctica - Metagenome #315 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028343 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5417 78.2467 52690798 87291 24 1 31 0 SRX3241664 Unrestricted 0.0 Metagenome 3300017913 *Microbiome Permanent Draft Marine microbial communities from Caribbean coral reef seawater Marine microbial communities from Caribbean coral reef seawater, Florida Keys, United States - site GB17 University of Illinois, Urbana-Champaign 3300017913 Metagenome Analysis MEGAHIT v1.1.1-2-g02102e1 released by JGI data releasing policy No Yes lweber@whoi.edu Laura Weber No Environmental Aquatic Intertidal zone Marine Coral reef seawater 24.60548 -81.4293 261148211 351276 81 18 87 23 0.0 Metagenome 3300053138 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere DOE Joint Genome Institute (JGI) 3300053138 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121586 -123.269608 652646734 1039925 154 154 235 165 Unrestricted 17.07 Metagenome 3300070512 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_045-M-20180222-COMP-DNA1 Battelle Memorial Institute 3300070512 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 37.112827 -119.731615 6.45-6.68 1661423 5424 47 3 91 5 0.0 Metagenome 3300025624 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-9-D (SPAdes) DOE Joint Genome Institute (JGI) 3300025624 Metagenome Analysis spades v. 3.11.1 Yes Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 330499708 698005 304 41 385 53 SRX2568519 Unrestricted 0.0 Metagenome 3300014868 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT830_16_10D DOE Joint Genome Institute (JGI) 3300014868 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9228 -106.952 171686744 405290 272 22 533 44 SRX3780496 Unrestricted 4.66 Metagenome 3300043564 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield ecozone, Canada - Lake 06-270 Genome Quebec 3300043564 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 52.413575 -56.01578 1236893614 2779815 454 109 844 201 0.0 Metagenome 3300008091 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158256496 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008091 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 121777469 170050 76 0 120 0 0.0 Metagenome 3300014815 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S21-03-R University of California, Los Angeles 3300014815 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 231058693 353648 181 0 254 0 SRX870378 0.0 Metagenome 3300049347 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MAF2 DOE Joint Genome Institute (JGI) 3300049347 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 347126010 981167 425 7 805 13 Unrestricted 6.67 Metagenome 3300049916 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_190515.NP1 DOE Joint Genome Institute (JGI) 3300049916 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 552583808 1185498 372 76 533 126 Restricted 12.5 Metagenome 3300012162 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ023 MetaG DOE Joint Genome Institute (JGI) 3300012162 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.873 -74.5232 210532147 427047 139 27 233 51 SRX3539462 Unrestricted 0.0 Metagenome 3300003312 *Microbiome Permanent Draft Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil, in a copper mine Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P1 sample University of Campinas 3300003312 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes danba.castro@gmail.com Daniel Castro No Environmental Terrestrial Unclassified Soil Unclassified Ore pile and mine drainage contaminated soil -6.426389 -50.051389 241760515 344800 100 0 174 0 0.0 Metagenome 3300000556 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Tailings pond microbial communities from Northern Alberta -Short chain hydrocarbon degrading methanogenic enrichment culture SCADC: McGill University 3300000556 Metagenome Analysis released per user request No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Built environment Petrochemical Tailings pond Wastewater Hydrocarbon resource environments 39.0042816 -77.1012173 7.26 0 0 0 0 0 0 0.0 Metagenome 3300045739 *Microbiome Permanent Draft Sediment microbial communities from various rivers and their estuaries in the United States Sediment microbial communities from Altamaha River estuary, Georgia, United States - BTRS19_Sengupta_8S DOE Joint Genome Institute (JGI) 3300045739 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sg.aditi@gmail.com Aditi Sengupta No Environmental Aquatic Intertidal zone Marine Estuary sediment 31.3258 -81.3218 1538487514 2566978 703 37 1243 64 Unrestricted 14.84 Metagenome 3300042506 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Mar2019-rf0549 DOE Joint Genome Institute (JGI) 3300042506 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 630763439 1023159 218 48 315 79 Unrestricted 18.23 Metagenome 3300051787 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - W15W8 DOE Joint Genome Institute (JGI) 3300051787 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 198597627 374411 279 86 534 123 Unrestricted 0.0 Metagenome 3300038400 *Microbiome Permanent Draft Soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA Soil microbial communities from sorghum farm in Illinois, United States - CABBI19_0005 DOE Joint Genome Institute (JGI) 3300038400 Metagenome Analysis metaspades v. 3.13.0 Yes Yes adina@iastate.edu Adina Howe No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.0633 -88.2058 3428184926 6021016 1100 38 1890 65 SRX9391995 Unrestricted 15.99 Metagenome 3300015164 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Storglaciaren, Tarfala, Sweden (Sample st-4b, rock/ice/stream interface) University of Bristol 3300015164 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.900879 18.43474 6.4 180223385 382546 134 11 268 13 0.0 Metagenome 3300041432 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P19_D2 (version 2) DOE Joint Genome Institute (JGI) 3300041432 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 1058484120 1672425 251 39 418 52 SRX10166904 Unrestricted 0.0 Metagenome 3300040552 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 021_R1_022417 University of Maryland 3300040552 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.30770278 24.53240278 2620376 7667 16 2 35 12 0.0 Metagenome 3300002502 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle CSP2_plank highO2_0.1 DOE Joint Genome Institute (JGI) 3300002502 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.534762 -107.782602 2117238325 4363705 5125 57 9362 117 SRX1990991 Unrestricted 0.0 Metagenome 3300021420 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M DOE Joint Genome Institute (JGI) 3300021420 Metagenome Analysis spades v. 3.11.1-check Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 3415481105 7186013 877 75 1610 144 SRX4023412 Unrestricted 9.85 Metagenome 3300031904 *Microbiome Permanent Draft Microbial communities from the deep biosphere Oceanic crust microbial communities from Louisville Seamount Chain, Pacific Ocean - 1376-7R re-assembly The Marine Biological Laboratory 3300031904 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Oceanic Marine Oceanic crust Oceanic crust -28.596 -173.28 2046453 7418 17 9 40 20 SRX869325, SRX834478 0.0 Metagenome 3300046694 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere DOE Joint Genome Institute (JGI) 3300046694 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5874 -123.1937 818509887 1302482 272 38 442 59 Unrestricted 21.07 Metagenome 3300027119 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_O2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027119 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 122550026 342966 275 96 514 139 SRX3311914 Unrestricted 0.0 Metagenome 7000000110 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158458797 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000110 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 70219335 120288 0 0 0 0 0.0 Metagenome 3300000780 *Microbiome Permanent Draft Human gut microbial communities from Waterloo, Canada Human gut microbiome from Waterloo, Canada, sample Size Selected University of Waterloo 3300000780 Metagenome Analysis released per JGI data release policy No Yes itskathylam@gmail.com Kathy Lam No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 43.4706 -80.5361 0 0 0 0 0 0 0.0 Metagenome 3300024439 *Microbiome Permanent Draft Vaginal microbial communities from lab mice Vaginal microbial communities from lab mice with HSV-2 infection, Madrid, Spain - C2, day 1 Polytechnic University of Valencia 3300024439 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Vagina Reproductive system Unclassified mice vagina 40.4191094 -3.6725753 153508 275 0 0 0 0 0.0 Metagenome 3300039337 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 275_4M Beijing Genomics Institute (BGI) 3300039337 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 10273622 11069 6 0 7 0 ERX491060 0.0 Metagenome 3300005504 *Microbiome Draft Poplar biomass bioreactor microbial communities from Brookhaven National Lab, NY Poplar biomass bioreactor microbial communities from Brookhaven National Lab, NY - total biomass decay community v2 DOE Joint Genome Institute (JGI) 3300005504 Metagenome Analysis Newbler released based on JGI ITS Yes Yes vdlelied@rti.org Daniel van der Lelie Yes 22629327 Engineered Solid waste Composting Wood Bioreactor Poplar biomass bioreactor 40.869444 -72.886667 335740875 1055680 268 8 508 18 Unrestricted 0.0 Metagenome 3300006128 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Oct07 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006128 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 288000306 783298 184 59 300 101 SRX2565292 Unrestricted 0.0 Metagenome 3300009912 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S12 University of New South Wales 3300009912 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 41285832 77973 12 7 16 14 0.0 Metagenome 3300043316 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-359 Genome Quebec 3300043316 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.813841 -102.397327 1127735217 2507826 437 35 779 53 0.0 Metagenome 3300031224 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #989 DOE Joint Genome Institute (JGI) 3300031224 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.457 78.1911 453698726 703779 155 48 176 78 SRX5649554 Unrestricted 34.87 Metagenome 3300043067 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - CCW_101317 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043067 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.9035 -89.3341 6352157 19802 40 6 74 7 SRX9381725 Unrestricted 48.9 Metagenome 3300042630 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A22 University of California, Davis 3300042630 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 269309397 756481 378 5 631 12 0.0 Metagenome 3300007681 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.753 DOE Joint Genome Institute (JGI) 3300007681 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 310215120 608773 338 53 529 96 SRX2753573 Unrestricted 0.0 Metagenome 3300070685 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_006-M-20190828-COMP-DNA1 3300070685 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 31244979 94952 34 4 77 6 0.0 Metagenome 3300011682 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00591 Weill Cornell Medical College 3300011682 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.72 -73.99 28693307 40131 18 0 28 0 SRX822558 0.0 Metagenome 3300032435 *Microbiome Permanent Draft Freshwater microbial communities from lake liftoff mats and glacier meltwater in Antarctica Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03 (spades assembly) (version 2) DOE Joint Genome Institute (JGI) 3300032435 Metagenome Analysis spades v. 3.13.0 Yes Yes slonczewski@kenyon.edu Joan Slonczewski No Environmental Aquatic Ice Freshwater Glacier meltwater Freshwater -77.714 162.445 1892359705 2960755 342 86 420 110 SRX2753511 Unrestricted 30.8 Metagenome 3300037570 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C4-7C DOE Joint Genome Institute (JGI) 3300037570 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 62068318 202439 157 4 259 4 SRX9166473, SRX9166472 Unrestricted 0.0 Metagenome 3300049684 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D14_B_3_control DOE Joint Genome Institute (JGI) 3300049684 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 141937012 298349 247 27 495 37 Unrestricted 11.78 Metagenome 3300043089 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver proximal colon microbial communities from Maple Ridge, British Columbia, Canada - Beaver4Prox.Colon1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043089 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Proximal colon proximal colon 49.18 -122.54 311668839 586293 626 20 901 21 SRX8346076 Unrestricted 27.41 Metagenome 3300070959 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Agroecosystem, Kansas, USA - KONA_005-M-20190617-COMP-DNA1 3300070959 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Agricultural land Soil 3551062 11147 23 5 54 4 0.0 Metagenome 3300055507 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.3C.9 SIP fraction DOE Joint Genome Institute (JGI) 3300055507 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 306870708 577750 143 4 211 6 Unrestricted 12.59 Metagenome 3300037862 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Unnamed Valley Lake #30 DOE Joint Genome Institute (JGI) 3300037862 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.523 78.4178 292142150 506757 105 38 160 58 SRX9173465 Unrestricted 37.51 Metagenome 3300026295 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026295 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.718176 -123.652732 528202076 1048815 572 41 982 55 SRX1991087 Unrestricted 0.0 Metagenome 3300036204 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C4-1C DOE Joint Genome Institute (JGI) 3300036204 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 62064833 206288 170 4 275 6 SRX8786725 Unrestricted 4.13 Metagenome 3300019786 *Microbiome Permanent Draft Permafrost microbial communities from Stordalen Mire, Sweden Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction) DOE Joint Genome Institute (JGI) 3300019786 Metagenome Analysis metalrec/blasr v. metalrec version 1.0.2/blasr 1.3.1 Yes Yes rich.270@osu.edu Virginia Rich Yes 30013118 Environmental Terrestrial Wetlands Soil Permafrost Permafrost 68.35 19.05 555291108 1011836 187 5 263 12 SRX3903269, SRX3903270, SRX3903272, SRX3903271, SRX3903274, SRX3903273, SRX3903275 Unrestricted 21.12 Metagenome 2199352003 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion v1 DOE Joint Genome Institute (JGI) 2199352003 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 27640358 60268 50 0 116 0 Unrestricted 0.0 Metagenome 3300003965 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Enrichment cultures from Harmful Algal Blooms in Lake Erie, HABS-00-39870 University of Michigan 3300003965 Metagenome Analysis IDBA-UD v1.1.1 released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lentic Freshwater Unclassified Freshwater -77.611214 163.119356 41731246 49179 27 1 24 0 0.0 Metagenome 3300064926 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 738 in Killam, Alberta, Canada - S00JY_0720 Microbiome Insights 3300064926 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.4334824 -111.5420862 118356677 171772 53 3 101 4 0.0 Metagenome 3300001108 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 DOE Joint Genome Institute (JGI) 3300001108 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 25098718 80746 115 29 187 41 SRX3312031 Unrestricted 0.0 Metagenome 3300036924 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5WT15 DOE Joint Genome Institute (JGI) 3300036924 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 312622016 788565 504 36 853 60 SRX8379537 Unrestricted 5.6 Metagenome 3300027593 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepB_8h DOE Joint Genome Institute (JGI) 3300027593 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 140347664 278832 106 10 142 7 SRX5245242 Unrestricted 20.96 Metagenome 3300010388 *Microbiome Permanent Draft Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV, may 2015 hepia ? hes-so 3300010388 Metagenome Analysis SPAdes 3.9 released by JGI data releasing policy No Yes julien.crovadore@hesge.ch Julien CROVADORE No Environmental Aquatic Pond Freshwater Unclassified Pond fresh water 46.25 6.28 283108393 763186 157 72 209 137 0.0 Metagenome 3300024357 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepB_8d DOE Joint Genome Institute (JGI) 3300024357 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 170112046 365924 168 10 286 12 SRX4547333 Unrestricted 12.47 Metagenome 3300040278 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_009-M-37-16-20140327-GEN-DNA1 Argonne National Laboratory 3300040278 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 7089691 20435 28 2 34 7 ERX2133949 0.0 Metagenome 3300037125 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0817S12re DOE Joint Genome Institute (JGI) 3300037125 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0388 139291011 231476 111 1 237 3 SRX8670217 Unrestricted 13.77 Metagenome 3300035656 *Microbiome Permanent Draft Wastewater microbial communities from medical facility sewage samples near Freiburg, Germany Wastewater microbial communities from medical facility sewage samples near Freiburg, Germany - C1748 University of Freiburg 3300035656 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 48.0 8.0 93863785 163428 106 5 213 9 0.0 Metagenome 3300049980 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Para, Brazil - F5-4A (v2) (version 2) DOE Joint Genome Institute (JGI) 3300049980 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -3.2967 -54.9638 928196072 2262880 557 28 1189 53 Restricted 0.0 Metagenome 3300044846 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2006D7-rr0381 DOE Joint Genome Institute (JGI) 3300044846 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1033597420 1594581 278 56 409 73 Unrestricted 20.8 Metagenome 3300041405 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 DOE Joint Genome Institute (JGI) 3300041405 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.8942 -103.685 415973408 967895 437 40 701 64 SRX14827168 Unrestricted 18.75 Metagenome 3300038956 *Microbiome Permanent Draft Sludge microbial communities from anaerobic digestion of cattle manure in bioreactor, Technical University of Denmark, Kongens Lyngby, Denmark Sludge microbial communities from anaerobic digestion of cattle manure in bioreactor, Technical University of Denmark, Kongens Lyngby, Denmark - thermophilic pre H2 Technical University of Denmark 3300038956 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Bioreactor Unclassified Anaerobic Unclassified sludge 55.78829 12.52682 321380254 477870 446 1 613 2 0.0 Metagenome 3300026642 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_12_17 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026642 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 9007091 10609 11 0 17 0 SRX2924866 Unrestricted 0.0 Metagenome 2209111004 *Microbiome Permanent Draft Macrotermes natalensis queen gut microbial communities from Naboomspruit, South Africa Macrotermes natalensis queen gut microbiome Beijing Genomics Institute (BGI) 2209111004 Metagenome Analysis Newbler released per JGI data release policy No Yes mpoulsen@bio.ku.dk Michael Poulsen No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Macrotermes natalensis queen gut -24.5160467 28.699288 785514940 958231 13 0 23 0 0.0 Metagenome 3300066011 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Barrow Environmental Observatory, Tundra, AK, USA - BARR_004-O-20170809-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066011 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 71.28241 -156.61936 64238254 188030 139 5 249 16 0.0 Metagenome 3300069506 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone Northern Range (Frog Rock), Northern Rockies, WY, USA - YELL_012-M-20180709-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069506 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 44.95348 -110.53914 16513920 52226 69 8 112 14 0.0 Metagenome 3300046425 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_171115.NP2 DOE Joint Genome Institute (JGI) 3300046425 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 938990225 1966259 530 78 859 127 Unrestricted 13.52 Metagenome 3300031600 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #46 DOE Joint Genome Institute (JGI) 3300031600 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.457 78.1911 487125904 851504 176 31 245 45 SRX5649284 Unrestricted 44.96 Metagenome 3300048632 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from North Pacific Ocean - CTD009A DOE Joint Genome Institute (JGI) 3300048632 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 9.839 -104.2909 362963926 630708 231 39 312 64 Unrestricted 45.78 Metagenome 3300060391 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210613_17_09 DOE Joint Genome Institute (JGI) 3300060391 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 380730404 578422 204 138 251 190 Unrestricted 32.02 Metagenome 3300045932 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P26SSC2_190918_f DOE Joint Genome Institute (JGI) 3300045932 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 730425433 1124424 217 1 349 1 SRX20650054 Unrestricted 12.4 Metagenome 3300015307 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_NF_20JUN2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015307 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 159840182 288936 16 37 13 43 SRX3923150 Unrestricted 9.89 Metagenome 3300069445 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_059-M-20170706-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069445 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 294063295 809696 234 19 481 32 0.0 Metagenome 3300013012 *Microbiome Permanent Draft Gypsum rock endolithic and hypoendolithic microbial communities Gypsum rock endolithic microbial communities from the Atacama Desert, Chile - Cordon de Lila Johns Hopkins Bayview Research CORES 3300013012 Metagenome Analysis metaSPAdes released by JGI data releasing policy Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock -23.53976 -68.68737 353839798 962115 192 2 391 9 0.0 Metagenome 3300042934 *Microbiome Permanent Draft Wetland soil microbial communities from various locations Soil microbial communities from agricultural land in Fort Collins, Colorado, USA - L_E1_T20_B DOE Joint Genome Institute (JGI) 3300042934 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6529 -104.9995 936307412 1321363 390 70 509 110 Unrestricted 54.32 Metagenome 3300008500 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764062976 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008500 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 44328127 70789 30 0 43 0 0.0 Metagenome 3300044795 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Para, Brazil - FS43 DOE Joint Genome Institute (JGI) 3300044795 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -3.2632 -54.8932 977660921 2318688 294 12 624 21 Unrestricted 9.6 Metagenome 3300030456 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from colorectal cancer patient in Boston, USA - MG100149 University of Michigan 3300030456 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 42.36 -71.06 20442973 33478 28 0 67 3 0.0 Metagenome 3300065515 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 769 in Veteran, Alberta, Canada - S00JY_0213 Microbiome Insights 3300065515 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.01390508 -111.1006914 13635345 20933 20 0 33 0 0.0 Metagenome 3300012671 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT300_2 DOE Joint Genome Institute (JGI) 3300012671 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8896 -106.9073 64606055 159439 197 21 453 34 SRX3368455 Unrestricted 0.0 Metagenome 3300041546 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_16 MetaG AgResearch, New Zealand, Mosgeil 3300041546 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 2593637093 5237737 391 45 1361 68 0.0 Metagenome 3300056775 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA23 DOE Joint Genome Institute (JGI) 3300056775 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 80474224 194509 202 5 418 3 Restricted 0.0 Metagenome 3300026101 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3819_2500 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026101 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic 9.7046 -55.3027 61093169 99916 42 4 55 13 SRX2524285 Unrestricted 0.0 Metagenome 3300000341 *Microbiome Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Ferrous microbial mat communities from One Hundred Spring Plain, Yellowstone National Park, USA v1 DOE Joint Genome Institute (JGI) 3300000341 Metagenome Analysis released based on JGI ITS Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Ferrous microbial mat 44.7330426 -110.7089928 3.6 50121814 96596 40 0 53 0 Unrestricted 0.0 Metagenome 3300019929 *Microbiome Permanent Draft Arctic soil viral communities from Stordalen Mire, Sweden Arctic soil viral communities from Stordalen Mire, Sweden - P+A2 DOE Joint Genome Institute (JGI) 3300019929 Metagenome Analysis spades v. SPAdes version: 3.10.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Terrestrial Palsa Soil Mineral soil core arctic soil 68.3526 19.0147 215289 644 3 1 3 1 SRX5627511 Restricted 0.0 Metagenome 3300020705 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 27AUG2007 epilimnion DOE Joint Genome Institute (JGI) 3300020705 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 84769303 182272 86 9 127 27 Unrestricted 0.0 Metagenome 3300021412 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - L2m1 DOE Joint Genome Institute (JGI) 3300021412 Metagenome Analysis spades v. 3.11.1-check Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.8825 -106.9105 130088253 321399 230 10 428 19 SRX3958614, SRX3958613 Unrestricted 0.0 Metagenome 3300027427 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A2-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300027427 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 19681766 62898 94 0 171 2 SRX1991138 Unrestricted 0.0 Metagenome 3300018426 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300018426 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 2166700124 4755839 1493 123 2450 195 SRX4071581 Unrestricted 15.82 Metagenome 3300007662 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human throat microbial communities from NIH, USA - visit 2, subject 765560005 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007662 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human 39.0042816 -77.1012173 65335769 112776 65 0 108 0 SRX024877 0.0 Metagenome 3300037149 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPN2-1-S DOE Joint Genome Institute (JGI) 3300037149 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3628 19.0528 646142523 1216892 252 44 378 61 SRX8166935 Unrestricted 11.42 Metagenome 3300025719 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_100m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025719 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 521526822 1014906 308 8 501 15 Unrestricted 0.0 Metagenome 7000000122 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 764811490 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000122 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 56195660 92940 0 0 0 0 0.0 Metagenome 3300045075 *Microbiome Permanent Draft Hot spring water microbial communities from thermal springs from various locations in Georgia Hot spring water microbial communities from a sulfur bath in Tbilisi, Georgia - Tbilisi 1 G. Eliava Institute of Bacteriophages, Microbiology and Virology 3300045075 Metagenome Analysis Custom JGI assembly. Yes Yes nageli2014@agruni.edu.ge Natia Geliashvili No Environmental Aquatic Warm (34-42C) Thermal springs Unclassified Hot spring water 41.688575 44.814528 30188279 44348 18 0 39 0 SRX8418716 0.0 Metagenome 3300029771 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 044_10_30_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029771 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 204642081 255166 240 0 319 0 0.0 Metagenome 3300029936 *Microbiome Permanent Draft Activated sludge bacterial and viral communities from EBPR bioreactors in Australia Activated sludge bacterial and viral communities from EBPR bioreactors in Queensland, Australia - SBR4-V92206 California Institute of Technology 3300029936 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Activated sludge -27.49999 153.01209 31672081 61076 25 1 37 3 SRX1100508 0.0 Metagenome 3300030070 *Microbiome Permanent Draft Chicken ceca and crop associated microbial communities from Bologna, Italy Chicken ceca associated microbial communities from Bologna, Italy - LSA_XT_55 University of Bologna 3300030070 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Birds Large intestine Digestive system Ceca Chicken ceca associated 44.26 11.28 8844609 20321 28 0 49 0 ERX1790085 0.0 Metagenome 3300009495 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 DOE Joint Genome Institute (JGI) 3300009495 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 728308434 1411543 696 90 999 127 SRX2999989 Unrestricted 0.0 Metagenome 3300009920 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S2 University of New South Wales 3300009920 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 56366614 95452 17 10 10 16 0.0 Metagenome 3300060426 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210603_07_13 DOE Joint Genome Institute (JGI) 3300060426 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 615367374 921118 262 133 342 186 Unrestricted 28.42 Metagenome 3300010206 *Microbiome Permanent Draft Phototrophic microbial communities Littoral zone phototrophic microbial communities from Lake Waban, Wellesley, MA - FCP16c Marine Biological Laboratory 3300010206 Metagenome Analysis CLC released per JGI data release policy No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Lake Freshwater Sediment littoral 42.2876 -71.30117 69275633 78313 21 0 27 0 0.0 Metagenome 3300069429 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_001-M-20160720-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069429 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 14459626 45454 91 3 181 5 0.0 Metagenome 3300064767 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 592 in High Prairie, Alberta, Canada - S00JY_0633 Microbiome Insights 3300064767 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 55.24151489 -116.2510406 118936 179 5 0 12 0 0.0 Metagenome 3300037881 *Microbiome Permanent Draft Bacterial communities from sewage treatment works near Birtley, UK Bioelectrochemical system biofilm bacterial communities from sewage treatment works near Birtley, UK - 27B Northumbria University 3300037881 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes martin.spurr@newcastle.ac.uk Martin Spurr No Engineered Bioreactor Unclassified Anaerobic Unclassified wastewater 54.903212 -1.595078 14036500 28958 62 0 127 0 0.0 Metagenome 3300011661 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Human oral microbial communities from various locations - University of British Columbia - SCG32 University of British Columbia 3300011661 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Unclassified Human oral 343181 813 2 0 2 0 SRX143141 0.0 Metagenome 3300065626 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 809 in Oyen, Alberta, Canada - S00JY_0309 Microbiome Insights 3300065626 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.10302812 -110.3235998 583938514 787022 177 0 262 3 0.0 Metagenome 3300045183 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_4_B DOE Joint Genome Institute (JGI) 3300045183 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 156702423 195014 81 1 102 2 Unrestricted 101.1 Metagenome 3300006485 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 763840445 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006485 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 1624184 1695 1 0 1 0 0.0 Metagenome 3300023211 *Microbiome Finished PPCP degradation by aerobic enrichment cultures (carbon source) Activated sludge enriched bacterial communities from WWTP in Fort Collins, Colorado, USA - CA Argonne National Laboratory 3300023211 Metagenome Analysis MegaHit v. 1.0.6 released by Karen Rossmassler Yes Yes karen.rossmassler@gmail.com Karen Rossmassler No Engineered Wastewater Unclassified Activated Sludge Unclassified activated sludge 40.585258 -105.084419 489220314 1022537 382 10 646 25 0.0 Metagenome 3300026313 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026313 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.718176 -123.652732 686736379 1176674 307 9 529 16 SRX1991101 Unrestricted 0.0 Metagenome 3300002397 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns DOE Joint Genome Institute (JGI) 3300002397 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 53390770 133181 102 15 171 22 SRX1987802 Unrestricted 0.0 Metagenome 3300031577 *Microbiome Permanent Draft Wetland soil microbial communities from various locations Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT DOE Joint Genome Institute (JGI) 3300031577 Metagenome Analysis spades v. 3.12.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified soil 41.3777 -82.5117 427770805 1174081 717 7 1278 18 SRX6413008 Unrestricted 135.01 Metagenome 7000000676 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765013792 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000676 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 129907092 242200 0 0 0 0 0.0 Metagenome 3300021121 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 25JUL2007 epilimnion DOE Joint Genome Institute (JGI) 3300021121 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 59347694 138452 59 12 72 24 Unrestricted 0.0 Metagenome 3300013583 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100740 University of Pennsylvania 3300013583 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4494995 6699 7 3 11 8 SRX756110 0.0 Metagenome 7000000411 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 638754422 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000411 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 130532914 228964 0 0 0 0 0.0 Metagenome 3300005977 *Microbiome Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Ferrous microbial mat communities from One Hundred Spring Plain, Yellowstone National Park, USA v2 (version 2) DOE Joint Genome Institute (JGI) 3300005977 Metagenome Analysis SPADES v3.5.0 released based on JGI ITS Yes Yes nnivanova@lbl.gov, jim.fredrickson@pnnl.gov Natasha Ivanova, Jim Fredrickson No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Ferrous microbial mat 44.7330426 -110.7089928 3.6 71603606 113838 47 2 61 0 Unrestricted 0.0 Metagenome 3300046449 *Microbiome Permanent Draft Seawater and ice microbial communities from Arctic Ocean Melted sea ice microbial communities from Arctic Ocean - MOSAiC PS122_405 DOE Joint Genome Institute (JGI) 3300046449 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Sea ice 87.4122 93.2151 677393420 1005109 267 107 405 189 Unrestricted 71.86 Metagenome 3300025318 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 1 (version 2) DOE Joint Genome Institute (JGI) 3300025318 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 26033198 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 1285113170 2767594 858 7 1642 20 SRX1983698 Unrestricted 0.0 Metagenome 3300050470 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - E6W16 DOE Joint Genome Institute (JGI) 3300050470 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 80847155 154588 183 37 302 66 Unrestricted 20.52 Metagenome 3300028357 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #134 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028357 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 60227273 95008 29 1 43 1 SRX2526862 Unrestricted 0.0 Metagenome 3300022686 *Microbiome Permanent Draft Carpinteria Salt Marsh Metagenomes 2014 to 2017 Soil microbial communities from marsh rhizosphere in Carpinteria, CA, United States - Rhizo HS University of California, Irvine 3300022686 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Terrestrial Wetlands Soil Unclassified Soil 34.401 -119.534 259598933 282452 76 1 78 0 0.0 Metagenome 2225789003 *Microbiome Draft Passalidae beetle gut microbial communities from Costa Rica Passalidae beetle gut microbial communities from Costa Rica -Larvae (2ML+2BL) DOE Joint Genome Institute (JGI) 2225789003 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS No Yes davidhs@lsi.umich.edu, davidhs@umich.edu David Sherman No Host-associated Arthropoda: Insects Gut Larva Unclassified Passalidae beetle gut 10.207151 -84.007673 52750108 125251 143 0 321 0 Unrestricted 0.0 Metagenome 3300012594 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100544 University of Pennsylvania 3300012594 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 16883855 37980 28 3 50 6 SRX756210 0.0 Metagenome 3300011809 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01374 Weill Cornell Medical College 3300011809 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.64 -74.01 30502114 42542 12 0 17 0 SRX823314 0.0 Metagenome 3300047621 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_5_D DOE Joint Genome Institute (JGI) 3300047621 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 188188140 234877 113 1 142 1 Restricted 0.0 Metagenome 3300025559 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025559 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.05241603 -121.76907401 189314457 384005 241 0 383 4 SRX7142762 Unrestricted 0.0 Metagenome 3300017648 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - eDNA 3rd pass 37_C BE-Lig MG (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017648 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes JMGladden@lbl.gov John Gladden No Engineered Solid waste Composting Mixed feedstock Commercial compost compost 37.83 -122.29 539597735 898484 653 23 948 26 SRX4808934, SRX4808935 Unrestricted 0.0 Metagenome 3300034956 *Microbiome Permanent Draft Marine microbial communities from Baffin Bay, Canada Marine microbial communities from Baffin Bay, Canada - S108_33m Genome Quebec 3300034956 Metagenome Analysis Spades v. 3.12.0 released by JGI data releasing policy Yes Yes thomas.grevesse@gmail.com Thomas Grevesse No Environmental Aquatic Oceanic Marine Photic zone Marine 76.16205 -74.35773 629678263 1405832 272 167 421 278 0.0 Metagenome 3300035725 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 DOE Joint Genome Institute (JGI) 3300035725 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1125 -122.987 2293536765 5313671 1172 94 2032 151 SRX8289477 Unrestricted 7.77 Metagenome 3300049353 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MCF2 DOE Joint Genome Institute (JGI) 3300049353 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 304865579 868819 415 5 716 14 Unrestricted 6.66 Metagenome 3300071103 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_044-M-20170614-COMP-DNA1 3300071103 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 3437867 10643 26 5 39 7 0.0 Metagenome 3300025365 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH26May08 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025365 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 91895798 198000 96 49 153 84 SRX2565940 Unrestricted 0.0 Metagenome 3300001800 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Mar_CSW14AB DOE Joint Genome Institute (JGI) 3300001800 Metagenome Analysis Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 125432850 253619 125 11 216 19 SRX3321594 Unrestricted 0.0 Metagenome 3300047297 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Thanlyin River, Mae Hong Son, Thailand - ME060026 DOE Joint Genome Institute (JGI) 3300047297 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 17.8354 97.6941 531825193 1007261 420 31 735 58 Unrestricted 21.97 Metagenome 3300035239 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2012_10m DOE Joint Genome Institute (JGI) 3300035239 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 50.0 -145.0 783872804 1763598 370 121 626 176 SRX8219449 Unrestricted 10.68 Metagenome 3300026836 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A2-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300026836 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 34037093 110915 140 1 252 3 SRX1991118 Unrestricted 0.0 Metagenome 3300014509 *Microbiome Permanent Draft Lettuce associated viral communities from produce distribution center in Michigan, USA Romaine lettuce associated viral communities from produce distribution center in Michigan, USA - FR15 Michigan State University 3300014509 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Romaine lettuce 2639095 4406 8 8 16 11 SRX1429212 0.0 Metagenome 3300044632 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME13Oct2018-rr0927 DOE Joint Genome Institute (JGI) 3300044632 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 903495099 1434173 352 76 506 109 Unrestricted 21.57 Metagenome 3300013020 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in West Virginia, USA - MSEEL Well Study Marcellus 3H_2016_04_06 DOE Joint Genome Institute (JGI) 3300013020 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back deep subsurface 39.6017 -79.9761 74175323 130093 355 0 608 0 SRX3021894 Unrestricted 136.31 Metagenome 3300029007 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 38_12M Beijing Genomics Institute (BGI) 3300029007 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 78282356 99115 70 0 97 0 ERX491115 0.0 Metagenome 3300007723 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_B_D1_MG DOE Joint Genome Institute (JGI) 3300007723 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4968 -122.1333 778391274 1442144 866 6 1380 9 SRX2523445 Unrestricted 0.0 Metagenome 3300028585 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T30 DOE Joint Genome Institute (JGI) 3300028585 Metagenome Analysis spades v. 3.11.1 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7416 -117.7042 1857837941 3187356 465 322 560 570 SRX5272832 Unrestricted 41.36 Metagenome 3300049198 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - A14_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049198 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 185669757 420970 317 11 586 14 Unrestricted 0.0 Metagenome 3300048795 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-P1(2) 10-14 DOE Joint Genome Institute (JGI) 3300048795 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3549 19.0438 735374671 1047664 156 16 243 23 Restricted 15.39 Metagenome 3300037991 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_038 - TARA_R100000081 CEA Genoscope 3300037991 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 19.0393 64.4913 284473252 592711 31 0 39 0 0.0 Metagenome 3300037607 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C7-7C DOE Joint Genome Institute (JGI) 3300037607 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 1084991171 2996960 1122 23 2002 46 SRX9166546 Unrestricted 6.48 Metagenome 3300037488 *Microbiome Permanent Draft Sediment microbial communities from various lakes in Switzerland Sediment microbial communities from Lake Zurich, Zurich, Switzerland - LZ_11 DOE Joint Genome Institute (JGI) 3300037488 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mark.lever@usys.ethz.ch Mark Alexander Lever No Environmental Aquatic Lake Freshwater Sediment sediment 47.2832 8.5937 603676467 1036078 283 5 480 10 SRX9148212 Unrestricted 15.47 Metagenome 3300005856 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED (SPADES assembly) (version 2) DOE Joint Genome Institute (JGI) 3300005856 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, binskeep@montana.edu; jim.fredrickson@pnnl.gov Natasha Ivanova, William P. Inskeep; Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.376 -110.69 95778213 171593 45 0 68 0 SRX2553549 Unrestricted 0.0 Metagenome 3300022137 *Microbiome Permanent Draft Enriched microbial communities from anaerobic bioreactor in Madison, Wisconsin, United States Xylose enriched microbial communities from anaerobic bioreactor in Madison, Wisconsin, United States - 63SRT DOE Joint Genome Institute (JGI) 3300022137 Metagenome Analysis spades v. 3.11.1-check Yes Yes noguera@engr.wisc.edu Daniel Noguera No Engineered Bioreactor Unclassified Anaerobic Unclassified Xylose enrichment biomass 43.0737 -89.4147 55954831 67821 74 2 81 3 SRX5337535, SRX5337533, SRX5337534 Unrestricted 289.03 Metagenome 3300009624 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_6_10 DOE Joint Genome Institute (JGI) 3300009624 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 324645128 652865 211 35 390 56 SRX3002043 Unrestricted 0.0 Metagenome 3300048003 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_110817.NP1 DOE Joint Genome Institute (JGI) 3300048003 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 824302729 1843136 485 104 772 164 Unrestricted 12.99 Metagenome 3300014160 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin01_30_metaG DOE Joint Genome Institute (JGI) 3300014160 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1216650569 2207424 606 11 1040 24 SRX3291949 Unrestricted 7.28 Metagenome 3300042429 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Jun2016-rr0436 DOE Joint Genome Institute (JGI) 3300042429 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 780962961 1209015 238 54 328 71 Unrestricted 26.62 Metagenome 3300030379 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021283-25 Beijing Genomics Institute (BGI) 3300030379 Metagenome Analysis Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 199719817 284456 172 1 274 2 0.0 Metagenome 3300010041 *Microbiome Permanent Draft Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A DOE Joint Genome Institute (JGI) 3300010041 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes klgravuer@ucdavis.edu Kelly Gravuer No Environmental Terrestrial Grasslands Soil Unclassified Serpentine soil 38.8723 -122.427 2216400096 4792198 1724 18 2962 44 SRX2525422 Unrestricted 0.0 Metagenome 3300019722 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BRT_7-8_MG DOE Joint Genome Institute (JGI) 3300019722 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 113334864 277834 226 14 406 19 SRX3982616 Unrestricted 3.59 Metagenome 3300042854 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355 NMDC pilot DOE Joint Genome Institute (JGI) 3300042854 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92029456 -106.94875775 826959822 2062842 566 15 1035 27 SRX5355403 0.0 Metagenome 3300065661 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 828b in Grassy Lake, Alberta, Canada - S00JY_0345 Microbiome Insights 3300065661 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.425784 -111.460018 150570178 214119 68 0 126 0 0.0 Metagenome 3300028612 *Microbiome Permanent Draft Deep ocean water column microbial communities from Yap Trench, western Pacific Ocean Seawater microbial communities from Yap Trench, western Pacific Ocean - 37I-Yap-CTD02-6000m 2000bp_Newsun Novogene 3300028612 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Abyssopelagic Marine Unclassified seawater 9.87 138.5 207672092 255171 65 1 62 2 0.0 Metagenome 3300011626 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00518 Weill Cornell Medical College 3300011626 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.88 -73.85 26930457 43078 16 1 16 0 SRX822487 0.0 Metagenome 3300036357 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C4-9A DOE Joint Genome Institute (JGI) 3300036357 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 145947025 457413 320 12 522 18 SRX8786896 Unrestricted 4.61 Metagenome 3300012578 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100384 University of Pennsylvania 3300012578 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 15397901 31470 31 10 36 20 SRX756273 0.0 Metagenome 3300004169 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 52_LOW8 DOE Joint Genome Institute (JGI) 3300004169 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 76945880 204452 44 1 77 0 SRX2720605 Unrestricted 0.0 Metagenome 3300005285 *Microbiome Draft Hoatzin crop microbial communities from Cojedes, Venezuela Hoatzin crop microbial communities from Cojedes, Venezuela - Epithelial fraction 14 DOE Joint Genome Institute (JGI) 3300005285 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes sgtringe@lbl.gov, maria.dominguez1@upr.edu Susannah Tringe, Maria Gloria Dominguez-Bello No Host-associated Birds Esophagus Digestive system Crop Hoatzin crop 8.956944 -68.299167 810346924 1800972 38 7 76 18 Unrestricted 0.0 Metagenome 3300022914 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071402CT metaG (version 2) DOE Joint Genome Institute (JGI) 3300022914 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 774001457 1403654 406 36 566 46 SRX4071965 Unrestricted 21.82 Metagenome 3300034642 *Microbiome Permanent Draft Marine planktonic microbial communities from Bay of Bengal, Indian Ocean Marine planktonic microbial communities from Bay of Bengal, Indian Ocean - 3E (SRX5580382-SRR8790593) Nanyang Technological University 3300034642 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released by JGI data releasing policy Yes Yes flauro@ntu.edu.sg Federico Lauro No Environmental Aquatic Unclassified Marine Unclassified Marine planktonic 2.27 81.11 500037825 1075295 360 149 575 195 0.0 Metagenome 3300035081 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - C6-0 Autonomous University of Barcelona 3300035081 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 62832380 257039 669 0 1177 0 0.0 Metagenome 3300029504 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI012156-34 Beijing Genomics Institute (BGI) 3300029504 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 84409788 105659 63 0 116 0 0.0 Metagenome 3300045249 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_1_C DOE Joint Genome Institute (JGI) 3300045249 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 146189136 173208 80 2 107 3 Unrestricted 114.59 Metagenome 3300021166 *Microbiome Permanent Draft Freshwater planktonic and plastic biofilm microbial communities in Lake Erie, USA Freshwater plastic biofilm microbial communities near Cleveland Ohio Easterly WWTP outflow, Lake Erie, USA - MD2014-0214 University of Michigan 3300021166 Metagenome Analysis Megahit v1.1.1 released by JGI data releasing policy No Yes gumm@umich.edu Jordan Gumm No Environmental Aquatic Lake Freshwater Unclassified Freshwater plastic biofilm 41.57 -81.59 277023759 293245 64 9 55 6 0.0 Metagenome 3300025912 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025912 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn rhizosphere 42.3948 -85.3738 3005332004 6494425 1166 71 2223 135 SRX2740407 Unrestricted 0.0 Metagenome 3300013728 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01007 Weill Cornell Medical College 3300013728 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.59 -73.81 23168053 38056 23 2 28 1 SRX822969 0.0 Metagenome 3300004187 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 69_HOW9 DOE Joint Genome Institute (JGI) 3300004187 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 48851706 118934 50 2 92 5 SRX2720789 Unrestricted 0.0 Metagenome 3300011172 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 15 - S13.2.55.3.a - transect 2, repeat 3, age 50-113 years, surface depth). University of Bristol 3300011172 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes EAEloeFadrosh@lbl.gov; maisie.nash@bristol.ac.uk; ama@envs.au.dk Emiley Eloe-Fadrosh; Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 78.90055556 12.07611111 241660 697 3 1 18 8 0.0 Metagenome 3300038836 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Natural salt marsh sediment microbial communities from Mersea Island, United Kingdom - Sp MINM 2A University of York 3300038836 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Natural salt marsh sediment 51.797167 0.920967 29911471 76388 70 1 113 3 0.0 Metagenome 3300020732 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 29MAY2009 epilimnion DOE Joint Genome Institute (JGI) 3300020732 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 149411448 298097 111 45 186 47 Unrestricted 0.0 Metagenome 3300003196 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment Column6K7-30 454 Life Sciences 3300003196 Metagenome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.342219 40.479289 6-8 0 0 0 0 0 0 0.0 Metagenome 3300049174 *Microbiome Permanent Draft Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama - S041_CH4_control DOE Joint Genome Institute (JGI) 3300049174 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes njbouskill@lbl.gov Nicholas Bouskill No Environmental Terrestrial Tropical forest Soil Bulk soil Soil 9.17936 -79.8296 754744099 1935518 492 26 932 44 Unrestricted 7.89 Metagenome 3300008259 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA University of Michigan 3300008259 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7026 -83.2538 585097080 986507 266 96 413 161 0.0 Metagenome 3300044973 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TS00 DOE Joint Genome Institute (JGI) 3300044973 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.4139 1152486453 2495727 1269 57 1996 86 SRX12657172 Unrestricted 10.1 Metagenome 3300001477 *Microbiome Permanent Draft Sheep rumen microbial communities from New Zealand from high and low methane emitting sheep Sheep rumen microbial communities from New Zealand - Rank02_low DOE Joint Genome Institute (JGI) 3300001477 Metagenome Analysis Velvet Made public because its older than 5 years No Yes janine.kamke@agresearch.co.nz, janine.kamke@uni-wuerzburg.de Janine Kamke No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen -40.352 175.608 220428912 436219 558 36 799 51 0.0 Metagenome 3300036585 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - CCW_080817 DOE Joint Genome Institute (JGI) 3300036585 Metagenome Analysis metaspades v. 3.13.0 Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.9035 -89.3341 232586505 681270 343 23 659 33 SRX8889439 Unrestricted 5.59 Metagenome 3300046704 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-C3 30-34 DOE Joint Genome Institute (JGI) 3300046704 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0435 534379335 848247 202 0 367 0 Restricted 13.35 Metagenome 3300012097 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ015 MetaG DOE Joint Genome Institute (JGI) 3300012097 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.7095 -74.6639 56710290 83175 71 5 70 14 SRX3539452 Unrestricted 0.0 Metagenome 3300060461 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210617_21_21 DOE Joint Genome Institute (JGI) 3300060461 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 341864353 501695 176 50 222 80 Unrestricted 43.81 Metagenome 3300043741 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - SF99_A001 DOE Joint Genome Institute (JGI) 3300043741 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.1605 -62.7977 957024479 2582229 456 7 970 10 Unrestricted 9.04 Metagenome 3300039376 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 640_M Beijing Genomics Institute (BGI) 3300039376 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 133644343 171485 80 0 184 0 ERX491298 0.0 Metagenome 3300036439 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_C1 DOE Joint Genome Institute (JGI) 3300036439 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 103779718 314366 276 20 465 35 SRX8396935 Unrestricted 5.14 Metagenome 3300055481 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.17C.12 SIP fraction DOE Joint Genome Institute (JGI) 3300055481 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 260744991 483632 174 48 287 73 Unrestricted 13.87 Metagenome 3300007056 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge C. singaporensis associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - co46is University of New South Wales 3300007056 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au, e.botte@aims.gov.au; n.webster@aims.gov.au Nicole Webster, Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Coelocarteria singaporensis (marine sponge) -9.8241 150.825833 69782100 162534 74 4 108 8 0.0 Metagenome 3300064892 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 678 in Boyle, Alberta, Canada - S00JY_0683 Microbiome Insights 3300064892 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 54.40412255 -112.5854583 362631623 482382 105 1 161 2 0.0 Metagenome 3300012849 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched mosquito-associated microbial communities from UW Madison campus, WI, USA - HID1973K_E1 MG DOE Joint Genome Institute (JGI) 3300012849 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 118725754 166705 100 0 163 0 SRX3564593 Unrestricted 0.0 Metagenome 3300015254 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT860_16_10D DOE Joint Genome Institute (JGI) 3300015254 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9226 -106.9518 225020982 525844 294 15 595 30 SRX3780497 Unrestricted 4.56 Metagenome 3300070839 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_005-O-20170721-COMP-DNA1 3300070839 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 67015117 188563 83 23 169 30 0.0 Metagenome 3300071027 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_043-M-20190612-COMP-DNA1 3300071027 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 5250347 15934 30 3 66 4 0.0 Metagenome 3300012252 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00689 Weill Cornell Medical College 3300012252 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.81 -73.95 36331156 51141 16 0 24 0 SRX822656 0.0 Metagenome 3300056883 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M2P_30_32 DOE Joint Genome Institute (JGI) 3300056883 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0099406 -81.5672344 1327415210 1978749 627 2 1021 2 Unrestricted 14.43 Metagenome 3300003320 *Microbiome Permanent Draft Sugarcane root and bulk soil microbial communities from Ayr, Burdekin, Queensland Australia Sugarcane root Sample H2 3300003320 Metagenome Analysis CLC genomics workbench 7 released by JGI data releasing policy No Yes yun.yeoh@uqconnect.edu.au Yun Kit Yeoh No Host-associated Plants Unclassified Roots Unclassified Sugarcane root and bulk soil -19.733298 147.17873 765271296 1029077 72 22 59 38 0.0 Metagenome 3300018868 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_50 DOE Joint Genome Institute (JGI) 3300018868 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 945331503 2088533 839 4 1522 9 SRX3941961 Unrestricted 60.23 Metagenome 3300047666 *Microbiome Permanent Draft Seawater and ice microbial communities from Arctic Ocean Melted sea ice microbial communities from Arctic Ocean - MOSAiC PS122_412 DOE Joint Genome Institute (JGI) 3300047666 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Sea ice 87.4122 93.2151 1129254958 1517006 399 152 460 221 Unrestricted 28.34 Metagenome 3300017764 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 8 SPOT_SRF_2010-02-11 DOE Joint Genome Institute (JGI) 3300017764 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 452894966 1073259 70 72 117 143 SRX7207082, SRX7207083 Unrestricted 0.0 Metagenome 3300029123 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019858-133 Beijing Genomics Institute (BGI) 3300029123 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 187883176 226707 147 0 242 0 0.0 Metagenome 3300024924 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 76_LOW10 (SPAdes) DOE Joint Genome Institute (JGI) 3300024924 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 62320588 90283 27 0 39 0 SRX2720798 Unrestricted 0.0 Metagenome 3300038313 *Microbiome Permanent Draft Liquor fermentation pit mud microbial communities from Chongqing University, China Liquor fermentation pit mud microbial communities from Luzhou, China - Meta-5-1-140-B Chongqing University 3300038313 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Bioreactor Unclassified Unclassified Unclassified Fermentation pit mud 28.88 105.45 219097401 317368 168 0 278 0 SRX691275 0.0 Metagenome 3300070520 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Soaproot Saddle, California, USA - SOAP_044-M-20180530-COMP-DNA1 Battelle Memorial Institute 3300070520 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 37.031452 -119.269313 5.63-6.02 3912166 12828 70 5 106 7 0.0 Metagenome 3300013329 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100646 University of Pennsylvania 3300013329 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8912844 21024 11 0 13 0 SRX756448 0.0 Metagenome 3300012181 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaG DOE Joint Genome Institute (JGI) 3300012181 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.9181 -74.5218 298792010 634946 313 11 514 31 SRX3539435 Unrestricted 0.0 Metagenome 3300018815 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_68 DOE Joint Genome Institute (JGI) 3300018815 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 554512295 1160925 417 3 683 6 SRX3942528 Unrestricted 92.46 Metagenome 3300048127 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_160720.NP2 DOE Joint Genome Institute (JGI) 3300048127 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 653784415 1409127 424 92 692 143 Unrestricted 12.4 Metagenome 3300064894 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0685 Microbiome Insights 3300064894 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.33140284 -114.1207075 1032005 1593 9 0 22 0 0.0 Metagenome 3300047557 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from East Fork Poplar Creek, Oak Ridge, Tennessee, USA - eastforkpoplarcreek_2019_sw_WHONDRS-S19S_0039 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047557 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 35.9662 -84.3573 359259476 619065 223 21 348 29 Unrestricted 0.0 Metagenome 3300020410 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148) CEA Genoscope 3300020410 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -21.0675 -35.3923 1030662226 2646994 428 216 771 461 0.0 Metagenome 3300055378 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.18C.14 SIP fraction DOE Joint Genome Institute (JGI) 3300055378 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 139509108 264299 60 24 97 24 Unrestricted 11.64 Metagenome 3300036896 *Microbiome Permanent Draft Soil microbial communities from a coastal freshwater wetland in North Carolina, United States Soil microbial communities from coastal freshwater wetland in North Carolina, United States - 11PFC DOE Joint Genome Institute (JGI) 3300036896 Metagenome Analysis metaspades v. 3.13.0 Yes Yes peraltaa@ecu.edu Ariane Peralta No Environmental Terrestrial Wetlands Soil Unclassified soil 35.8959 -76.1658 757818300 1243235 264 10 472 11 SRX8387884 Unrestricted 13.25 Metagenome 3300025299 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025299 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 362507286 549682 138 2 167 3 SRX2770589 Unrestricted 0.0 Metagenome 3300012254 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100760 University of Pennsylvania 3300012254 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 26881154 55531 31 5 54 6 SRX756090 0.0 Metagenome 3300032197 *Microbiome Permanent Draft Microbial communities from various environments in Magnetic Island Reef, Townsville, Australia Sediment microbial communities from Magnetic Island Reef, Townsville, Australia - 36358 AGRF 3300032197 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes b.glasl@aims.gov.au Bettina Glasl No Environmental Aquatic Coastal Marine Sediment Sediment -19.1531 146.8641 1579582348 4332860 889 14 1470 46 0.0 Metagenome 3300001053 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN588 DOE Joint Genome Institute (JGI) 3300001053 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.070856 -96.582821 62391 204 10 0 19 0 SRX3311850 Unrestricted 0.0 Metagenome 3300015252 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT399_16_10D DOE Joint Genome Institute (JGI) 3300015252 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9229 -106.9511 166921607 414331 321 9 577 17 SRX3780462 Unrestricted 4.56 Metagenome 3300001761 *Microbiome Permanent Draft Wastewater microbial communities from Belvaux, Luxembourg Wastewater microbial communities from Belvaux, Luxembourg - M36 3300001761 Metagenome Analysis CLC genomics Workbench released by JGI data releasing policy Yes Yes goux@lippmann.lu, xavier.goux@list.lu Xavier Goux No Engineered Bioreactor Sludge Anaerobic Unclassified Wastewater 49.506095 5.943536 32999958 36909 12 0 16 0 0.0 Metagenome 3300070496 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_047-M-20170719-COMP-DNA1 Battelle Memorial Institute 3300070496 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 38.894257 -78.137217 5.41-6.29 1306523 4466 19 2 38 6 0.0 Metagenome 3300005840 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 DOE Joint Genome Institute (JGI) 3300005840 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 3597156304 11037010 2623 179 4411 363 SRX2832623 Unrestricted 0.0 Metagenome 3300027931 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_9_15 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027931 Metagenome Analysis spades v. 3.11.1 Yes Yes jim.fredrickson@pnnl.gov; binskeep@montana.edu Jim Fredrickson; William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.7315 -110.7113 3 24374908 62306 4 0 3 0 SRX2753793 Unrestricted 0.0 Metagenome 3300027776 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 8/11/14 A brown DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027776 Metagenome Analysis spades v. 3.11.1 Yes Yes ebyoung@uwm.edu Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 805429203 1648562 531 108 873 184 SRX2747781 Unrestricted 0.0 Metagenome 3300039886 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA Prairie soil microbial communities from Boone County, Iowa, USA - P31-Micro-July2012 Iowa State University 3300039886 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land Prairie soil 42.01375 -93.783837 23297618 76125 83 4 164 8 0.0 Metagenome 3300028910 *Microbiome Permanent Draft Dolichoderus ant bacterial communities Ant gut bacterial community from Dolichoderus sp. 1-PL2018, Madre de Dios, Puerto Maldonado, Peru - colony JSC161 Harvard University 3300028910 Metagenome Analysis IDBA-UD v. 1.0 released by JGI data releasing policy Yes Yes yihu.bnu@gmail.com Yi Hu No Host-associated Arthropoda: Insects Gut Digestive system Unclassified ant gut -12.5 -70.1 109268931 138441 4 13 5 104 SRX3936343 0.0 Metagenome 3300017762 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 45 SPOT_SRF_2013-07-18 DOE Joint Genome Institute (JGI) 3300017762 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 438779691 1010122 126 40 242 80 SRX7207514, SRX7207515 Unrestricted 0.0 Metagenome 3300043581 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 067-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043581 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.927 -106.9792 300536021 842629 460 31 940 55 Unrestricted 7.66 Metagenome 2058419010 *Microbiome Permanent Draft Feline fecal microbial communities from Illinois, USA cat metagenome 4 Research and Testing Laboratory 2058419010 Metagenome Analysis seqman NGEN transcriptome released per JGI data release policy No Yes sdowd@pathogenresearch.org Scot E. Dowd No Host-associated Mammals Large intestine Digestive system Fecal Feline fecal 40.11 -88.4 55494284 165770 153 0 258 0 0.0 Metagenome 3300003475 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from the Indian Ocean - GS112 J. Craig Venter Institute (JCVI) 3300003475 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Oceanic Marine Unclassified Marine -8.505 80.37556 224938505 730224 317 6 613 7 0.0 Metagenome 3300034060 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16May2013-rr0016 DOE Joint Genome Institute (JGI) 3300034060 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1443782338 2800956 499 167 709 250 SRX7621641 Unrestricted 14.12 Metagenome 3300025610 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025610 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 302452541 685352 171 0 277 3 SRX2864166 Unrestricted 0.0 Metagenome 3300048850 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD4 DOE Joint Genome Institute (JGI) 3300048850 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.347657 -119.2808 606893811 825957 92 92 117 44 Unrestricted 50.89 Metagenome 3300041663 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_46 MetaG AgResearch, New Zealand, Mosgeil 3300041663 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 3601273835 7108089 349 44 1559 70 0.0 Metagenome 3300024922 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 106_HOW12 (SPAdes) DOE Joint Genome Institute (JGI) 3300024922 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 59478449 84171 27 0 37 0 SRX2721179 Unrestricted 0.0 Metagenome 3300047385 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_140108.NP1 DOE Joint Genome Institute (JGI) 3300047385 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 580973921 1189658 427 57 644 79 Unrestricted 11.71 Metagenome 2222084009 *Microbiome Permanent Draft Transgenic grape vine soil microbial communities from Colmar, France Transgenic grape vine soil microbial communities from Colmar, France, sample ColmarContigsOGM CEA Genoscope 2222084009 Metagenome Analysis Velvet released per JGI data release policy No Yes sandrine.demaneche@ec-lyon.fr Sandrine DEMANECHE No Environmental Terrestrial Unclassified Soil Agricultural land Transgenic grape vine soil 48.081 7.355 126403318 495209 233 0 534 0 0.0 Metagenome 3300015181 *Microbiome Permanent Draft Human fecal microbial communities from infant diaper, Dhaka, Bangladesh Human fecal microbial communities from infant diaper, Dhaka, Bangladesh - DMDT001N Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300015181 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes dhtaft@ucdavis.edu Diana Taft No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant feces 23.8103 90.4125 16930772 36114 10 0 13 2 0.0 Metagenome 3300045429 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-544 Genome Quebec 3300045429 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 54.035583 -125.040308 906251379 2124972 726 89 1351 137 0.0 Metagenome 3300043178 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from California, United States - Mound Spring (MOS_S4) (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043178 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Warm (34-42C) Thermal springs Unclassified Desert spring 37.0233 -117.3845 6.89 945830653 1344518 377 8 561 8 SRX9167300 Unrestricted 43.84 Metagenome 3300041722 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_273 MetaG AgResearch, New Zealand, Mosgeil 3300041722 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1894181942 3578038 277 31 1122 47 0.0 Metagenome 3300027163 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N1_40_50 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027163 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380143 -119.2723688 146596008 403238 236 20 483 42 SRX2523202 Unrestricted 0.0 Metagenome 3300042852 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202 NMDC pilot DOE Joint Genome Institute (JGI) 3300042852 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92044255 -106.94881797 2517389177 5950106 1076 24 1997 41 SRX5355405 0.0 Metagenome 3300019724 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLT_9-10_MG DOE Joint Genome Institute (JGI) 3300019724 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 111414253 276116 224 25 425 41 Unrestricted 3.64 Metagenome 3300029502 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001981-133 Beijing Genomics Institute (BGI) 3300029502 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 165447476 197161 119 0 184 1 0.0 Metagenome 3300059711 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1569-02 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059711 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2861 -123.7318 197760573 435862 139 15 216 24 SRX2753764 Unrestricted 0.0 Metagenome 3300002285 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP07-I3 3300002285 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300025914 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025914 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 2924677010 6426642 1211 199 2317 324 SRX3203320 Unrestricted 0.0 Metagenome 3300032081 *Microbiome Finished The variation of viral communities during algal boom from the coastal of Qingdao, China Marine viral communities from the Yellow sea, Qingdao, China - ZQ0630 Beijing Novogene Bioinformatics Technology Co., Ltd 3300032081 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes foodyqw_12@163.com Yang Qingwei No Environmental Aquatic Coastal Marine Unclassified marine 36.062 120.315 348425701 553738 89 2 140 4 0.0 Metagenome 3300017623 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - BS13-10 University of Michigan 3300017623 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.42421 -85.85677 12288500 16502 7 0 7 0 0.0 Metagenome 3300036986 *Microbiome Permanent Draft Sediment microbial communities from various lakes in Switzerland Sediment microbial communities from Lake Lucerne, Nidwalden, Switzerland - LL_3.5 DOE Joint Genome Institute (JGI) 3300036986 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mark.lever@usys.ethz.ch Mark Alexander Lever No Environmental Aquatic Lake Freshwater Sediment sediment 46.9968 8.347 618115045 1054216 278 0 450 0 SRX8399657 Unrestricted 15.07 Metagenome 3300022912 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_150_MG DOE Joint Genome Institute (JGI) 3300022912 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca; shallam@interchange.ubc.ca Sean Crowe; Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5847 -123.5008 798595804 1363468 533 1 815 2 SRX4482516 Unrestricted 31.45 Metagenome 3300042249 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D316_2 DOE Joint Genome Institute (JGI) 3300042249 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 186906064 265730 157 7 185 13 Unrestricted 65.18 Metagenome 3300007748 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Upa-Upasina ""control"", co15aic 200bp-25jan2016" University of New South Wales 3300007748 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au, e.botte@aims.gov.au; n.webster@aims.gov.au Nicole Webster, Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Coelocarteria singaporensis (marine sponge) -9.828217 150.820517 112952298 204313 59 2 105 2 0.0 Metagenome 3300020734 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 15JUL2008 hypolimnion DOE Joint Genome Institute (JGI) 3300020734 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 153665877 309706 152 15 239 18 Unrestricted 0.0 Metagenome 3300049172 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S32_C_D89 hydrophilic DOE Joint Genome Institute (JGI) 3300049172 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 576247469 919491 265 18 359 26 Unrestricted 26.24 Metagenome 3300038499 *Microbiome Permanent Draft Freshwater sediment microbial communities from Alaska Lake sediment microbial communtites from St. Paul Island, Alaska - PH181_473 University of California, Santa Cruz 3300038499 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Sediment Lake sediment 57.18 -170.25 2242039 6520 2 0 3 0 0.0 Metagenome 3300018001 *Microbiome Permanent Draft Coastal wetland sediment microbial communities from the Mid-Atlantic and Southeast Atlantic Coast of USA, responding to salinity intrusion. Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5 DOE Joint Genome Institute (JGI) 3300018001 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Freshwater sediment 35.9061 -76.1569 819691874 1696272 555 6 873 7 SRX4367467 Unrestricted 5.85 Metagenome 3300030033 *Microbiome Permanent Draft Infant fecal microbial communities from Pittsburgh, USA Infant fecal microbial communities from Pittsburgh, USA - NECEvent2014_2_6 Banfield Lab, University of California, Berkeley 3300030033 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant fecal 40.4308 -79.9598 5397215 6330 16 0 8 0 0.0 Metagenome 3300011174 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 19 - S13.2.70.1.a - transect 2, age 2,000 years, surface depth) University of Bristol 3300011174 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes EAEloeFadrosh@lbl.gov; maisie.nash@bristol.ac.uk; ama@envs.au.dk Emiley Eloe-Fadrosh; Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 79.76833333 12.14361111 7.5 998864 3295 17 0 32 0 0.0 Metagenome 3300040629 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 045B_R1 University of Maryland 3300040629 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.91585556 25.55503056 1220264 3393 9 3 11 4 0.0 Metagenome 3300039996 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONZ_045-M-20160714-COMP-DNA1 Battelle Memorial Institute 3300039996 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.10077 -96.56309 17132626 51264 74 3 140 11 0.0 Metagenome 3300046702 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-C2 40-44 DOE Joint Genome Institute (JGI) 3300046702 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0434 225642766 378010 142 0 212 0 Restricted 11.27 Metagenome 3300056638 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.18C.15 SIP fraction DOE Joint Genome Institute (JGI) 3300056638 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 76155702 137754 63 11 94 10 Unrestricted 12.39 Metagenome 3300050325 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_93 DOE Joint Genome Institute (JGI) 3300050325 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -76.91 160.935 452347897 644767 90 32 90 49 SRX18235941 Restricted 29.82 Metagenome 3300034387 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Eunicella gazella from Algarve, Portugal - EG16H Molecular Research LP (MR DNA) 3300034387 Metagenome Analysis Metawrap workflow v. 1.0.5 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 61707333 70050 8 2 9 3 0.0 Metagenome 3300029489 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 098_4_28_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029489 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 190702544 274025 251 0 319 0 0.0 Metagenome 3300022318 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL3WBGP1 JM103 AGRF 3300022318 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996531 115.533257 38245960 74438 40 3 58 4 0.0 Metagenome 3300040963 *Microbiome Permanent Draft Sediment microbial communities from Haima cold seep, South China Sea, China Sediment microbial communities from Haima cold seep, South China Sea, China - SY72.4.1_BG Magigene technology co., LTD. 3300040963 Metagenome Analysis IDBA v. 1.1.3 released by JGI data releasing policy No Yes sulei@tongji.edu.cn Lei Su No Environmental Aquatic Cold seeps Marine Sediment Sediment 16.732501 110.461399 0 to .02 325568506 405389 93 1 116 2 0.0 Metagenome 3300012592 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100631 University of Pennsylvania 3300012592 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 16515129 37633 19 1 29 0 SRX756463 0.0 Metagenome 3300025686 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHG2_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025686 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 34.72 135.27 511912220 879071 436 3 628 2 SRX2338771 Unrestricted 0.0 Metagenome 3300024235 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 79D DOE Joint Genome Institute (JGI) 3300024235 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 256698518 630187 207 21 303 29 SRX4474016 Unrestricted 13.92 Metagenome 3300033396 *Microbiome Permanent Draft Metagenomic SGS 2x251 Riparian soil bacterial communities from Cottonwood Creek Park, Encinitas, CA, USA - R12 Illumina 3300033396 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Riparian soil Soil 33.051604 -117.289363 342938708 1234384 272 27 510 35 0.0 Metagenome 3300049809 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - MR_080817 DOE Joint Genome Institute (JGI) 3300049809 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Unclassified Soil Grasslands soil 41.878 -89.3434 860519808 2194785 563 23 1106 45 Unrestricted 0.0 Metagenome 3300040043 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Moab, Southern Rockies & Colorado Plateau, UT, USA - MOAB_004-M-20170521-COMP-DNA1 Battelle Memorial Institute 3300040043 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.24833 -109.38827 14368888 43393 88 3 145 3 0.0 Metagenome 3300022559 *Microbiome Permanent Draft Subsurface microbial diversity of groundwater of Koyna-Warna region, Deccan traps, Panchgani, Maharashtra, India Groundwater microbial community from Koyna-Warna region, Deccan traps, Gothane, Maharashtra, India - DBW K77 Indian Institute of Technology, kharagpur 3300022559 Metagenome Analysis Spades v. 3.10 released by JGI data releasing policy No Yes sarpinaki@gmail.com; sarpinaki@yahoo.com Dr PINAKI SAR; Pinaki Sar No Environmental Aquatic Groundwater Freshwater Aquifer Groundwater 17.299028 73.7385 106886689 159037 75 2 114 0 0.0 Metagenome 3300003628 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 m-RNA DAY 78 University of Sao Paulo, Virginia Bioinformatics Institute 3300003628 Metagenome Analysis SoapDeNovo released per JGI data release policy No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 10220813 26245 7 38 22 86 0.0 Metagenome 2084038005 *Microbiome Permanent Draft Acid mine drainage microbial communities from Yunfu, Dabaoshan, and Foukou, China, of pyrites, lead-zinc tailings, and polymetallic ore Acid Mine Drainage metagenome from Dabaoshan Sun Yat-Sen University 2084038005 Metagenome Analysis released per JGI data release policy No Yes lishjin@student.sysu.edu.cn Sheng-Jin Li No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 24.61435 113.6714 2.6 11409966 18305 8 0 8 0 0.0 Metagenome 3300011353 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100671 University of Pennsylvania 3300011353 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14464604 35546 11 0 19 0 SRX756423 0.0 Metagenome 3300009176 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG DOE Joint Genome Institute (JGI) 3300009176 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 4160152041 8562826 2433 160 3916 275 SRX3203323 Unrestricted 0.0 Metagenome 3300028986 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 272_B Beijing Genomics Institute (BGI) 3300028986 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 37379724 40251 31 0 37 0 ERX491053 0.0 Metagenome 3300017987 *Microbiome Permanent Draft Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaG DOE Joint Genome Institute (JGI) 3300017987 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes valentine@geol.ucsb.edu David Valentine No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Sediment Hypersaline lake sediment 33.4166 -115.9166 2039414648 3805730 1295 16 2122 26 SRX3905532 Unrestricted 9.16 Metagenome 3300032239 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime Ecozone, Canada - Lake 07-010 Genome Quebec 3300032239 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.969839 -64.555716 697596967 1455921 353 97 625 220 0.0 Metagenome 3300044634 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME08Jul2014-rr0921 DOE Joint Genome Institute (JGI) 3300044634 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 987470979 1514905 305 50 462 60 Unrestricted 22.11 Metagenome 3300014736 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01185 Weill Cornell Medical College 3300014736 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -73.82 32668756 54625 23 0 29 0 SRX823140 0.0 Metagenome 3300014971 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS65_3 University of Hohenheim 3300014971 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 150910274 237269 96 1 168 1 0.0 Metagenome 3300000179 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P16 500m DOE Joint Genome Institute (JGI) 3300000179 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 49.283333 -134.666667 126211292 282180 112 22 187 31 Unrestricted 0.0 Metagenome 7000000503 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764811490 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000503 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 125156839 217938 0 0 0 0 0.0 Metagenome 3300033575 *Microbiome Permanent Draft Metagenomic SGS 2x251 Staggered mock microbial community from ATCC, Manassa, VA, USA - ATCC3 Illumina 3300033575 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Laboratory 38.752303 -77.519989 28893114 33091 12 0 18 0 0.0 Metagenome 3300007040 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 2, subject 764305738 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007040 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 30656796 48178 19 6 24 6 SRX024894 0.0 Metagenome 3300026499 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B DOE Joint Genome Institute (JGI) 3300026499 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 199060093 515891 246 17 481 20 SRX4804132 Unrestricted 10.16 Metagenome 3300006157 *Microbiome Finished Marine microbial communities from the Red Sea brine-pools Marine microbial communities from the Red Sea brine-pool Kebit Deep Lower-Interfase King Abdullah University of Science and Technology 3300006157 Metagenome Analysis Newbler released per PI No Yes redcancerbero@gmail.com, alm067@ucsd.edu Alvaro M. Plominsky No Environmental Aquatic Unclassified Marine Unclassified Marine 24.7187 36.2888 1490213 3828 3 0 7 0 0.0 Metagenome 3300017969 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300017969 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1969998854 4284983 1421 41 2453 96 SRX4072456 Unrestricted 14.74 Metagenome 3300013743 *Microbiome Permanent Draft Oral microbial communities from fossilized dental plaque from Dalheim, Germany Oral microbial communities from fossilized dental plaque from Dalheim, Germany - S6-Shot-G12-calc University of Oklahoma 3300013743 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skeletonized remains Remains Dental calculus Fossilized dental plaque 51.565093 8.849015 52253694 142711 102 0 199 0 SRX340015 0.0 Metagenome 3300029467 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001859-113 Beijing Genomics Institute (BGI) 3300029467 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 132599729 155606 102 0 143 0 0.0 Metagenome 3300009622 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155 DOE Joint Genome Institute (JGI) 3300009622 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -24.9939 -35.9974 158686535 368268 219 90 98 130 SRX2753927 Unrestricted 0.0 Metagenome 3300011198 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 7 - S13.1.40.a - transect 1, age 29 years, surface depth) University of Bristol 3300011198 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes EAEloeFadrosh@lbl.gov; maisie.nash@bristol.ac.uk; ama@envs.au.dk Emiley Eloe-Fadrosh; Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 79.1525 12.21555556 7.5 13376228 33329 29 3 60 8 0.0 Metagenome 3300040806 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Estuary water microbial communities from Narragansett Bay, Rhode Island, USA - E1_AmbA DOE Joint Genome Institute (JGI) 3300040806 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.9078 -71.5683 620401641 915029 268 93 382 117 SRX9640608 Unrestricted 17.62 Metagenome 3300013951 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - sediment SCG74 University of British Columbia 3300013951 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Sediment Marine 225134 705 0 0 0 0 SRX143183 0.0 Metagenome 3300002856 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Tailing Pond Surface TP_surface McGill University 3300002856 Metagenome Analysis released per PI's request No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Built environment Wastewater Tailings pond Unclassified Hydrocarbon resource environments 57.02 -111.55 728742540 1823247 632 38 1170 46 0.0 Metagenome 3300020486 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 20AUG2008 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020486 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.099444 -89.404444 41338551 92330 65 12 103 17 SRX3310673 Unrestricted 0.0 Metagenome 3300025137 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-32 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025137 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 49.2833 -134.6666 424519096 1100206 5 2 10 3 SRX2553658 Unrestricted 0.0 Metagenome 3300007960 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG DOE Joint Genome Institute (JGI) 3300007960 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 38.9819 -76.3716 636203144 1484236 0 1 1 3 SRX5209309, SRX2753469 Unrestricted 0.0 Metagenome 3300001726 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP-103 DOE Joint Genome Institute (JGI) 3300001726 Metagenome Analysis Yes Yes mbsulli@gmail.com, sacinas@icm.csic.es; mbsulli@gmail.com Matthew Sullivan, Silvia G. Acinas; Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 21.0597 -150.4292 62177296 140857 62 3 115 4 SRX4915138 Unrestricted 0.0 Metagenome 3300009051 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1449B-02 DOE Joint Genome Institute (JGI) 3300009051 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2327 -123.9168 296642656 599941 293 12 455 13 SRX2753614 Unrestricted 0.0 Metagenome 3300044930 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_6_E DOE Joint Genome Institute (JGI) 3300044930 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 211545716 253231 125 2 150 1 Unrestricted 88.43 Metagenome 3300033120 *Microbiome Finished Seoul Wastewater Treatment Plant Virome, South Korea Raw sewage viral community from Jungnang wastewater treatment plant, Seoul, South Korea - JWWTP-input v. 1 Macrogen 3300033120 Metagenome Analysis SPAdes v. 3.10.1 released by JGI data releasing policy No Yes chojc@inha.ac.kr Jang-Cheon Cho No Engineered Wastewater Unclassified Sewage Unclassified Wastewater 37.557429 127.065267 26701936 38711 0 0 0 0 0.0 Metagenome 3300028896 *Microbiome Permanent Draft Axial Seamount Reassemblies Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS907_Anemone_DNA IDBA_UD reassembly Marine Biological Laboratory 3300028896 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes cfortunato@gmail.com; randerson@carleton.edu; elks@mit.edu Caroline Fortunato; Rika Anderson; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933231 -130.013645 226318478 510325 614 16 962 37 0.0 Metagenome 3300041929 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_491 MetaG AgResearch, New Zealand, Mosgeil 3300041929 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 721167144 1469034 249 27 743 45 0.0 Metagenome 3300031210 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #596 DOE Joint Genome Institute (JGI) 3300031210 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 212830665 399947 92 12 129 24 SRX5649488 Unrestricted 57.89 Metagenome 3300027247 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1555A-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027247 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2024 -123.9409 178198238 368038 158 8 222 10 SRX2753737 Unrestricted 0.0 Metagenome 3300009763 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Root nodule microbial communities of legume samples collected from Mexico - Siratro Mexico nodule mix DOE Joint Genome Institute (JGI) 3300009763 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Host-associated Plants Nodule Roots Unclassified Root nodule 19.09098 -98.87936 378933329 415177 1004 3061 1673 5840 SRX3006943 Unrestricted 0.0 Metagenome 3300042075 *Microbiome Permanent Draft Forest and sugarcane field soil microbial communities from Santa Rita do Passa , Quatro, Sao Paulo, Brazil Soil microbial communities from sugarcane field in Santa Rita do Passa , Quatro, Sao Paulo, Brazil - SUG-W_3 UNESP-FCAV 3300042075 Metagenome Analysis Custom JGI assembly. Yes Yes No Environmental Terrestrial Unclassified Soil Agricultural land Soil -21.708519 -47.582469 52681733 133531 46 0 107 0 SRX9176020 0.0 Metagenome 3300008113 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA University of Michigan 3300008113 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.8271 -83.1945 9.128 655184378 1139065 291 127 453 228 0.0 Metagenome 3300022719 *Microbiome Permanent Draft Solar saltern microbial communities from the Namib Desert Sediment microbial communities from solar saltern in Namib Desert, Swakopmund, Namibia - Eisfeld sink 2017 Genewiz Inc. 3300022719 Metagenome Analysis SPAdes v. 3.6.0 released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat and sediment -22.4849444 14.57152778 7.44 581547686 816374 194 2 217 5 0.0 Metagenome 3300021414 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Coastal seawater microbial communities from Marineland, Florida, United States - SWP TP1 #2 DOE Joint Genome Institute (JGI) 3300021414 Metagenome Analysis spades v. 3.11.1-check Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6703 -81.2145 92816204 128175 56 0 58 1 SRX3985499 Unrestricted 108.62 Metagenome 3300007664 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 765074482 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007664 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 197271323 269801 161 0 216 0 0.0 Metagenome 3300046735 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-C1 30-34 DOE Joint Genome Institute (JGI) 3300046735 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0435 107596008 180957 84 1 142 0 Restricted 14.59 Metagenome 2228664046 *Microbiome Permanent Draft Deep Underground Science and Engineering Laboratory groundwater microbial communities from South Dakota, US Mine drainage microbial communities from Lead, South Dakota, sample HS4850W040511 University of Florida 2228664046 Metagenome Analysis released per PI No Yes dave.bergmann@bhsu.edu David Bergmann No Environmental Aquatic Groundwater Freshwater Unclassified Deep Underground Science and Engineering Laboratory groundwater 39.0042816 -77.1012173 8.84 5967802 10856 15 0 43 0 0.0 Metagenome 7000000124 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 737052003 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000124 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2146299 2347 0 0 0 0 0.0 Metagenome 3300029148 *Microbiome Permanent Draft Aquariaum water viral communities from Chicago, USA Aquariaum water viral communities from Chicago, USA - Great Lakes - GLB1 Michigan State University 3300029148 Metagenome Analysis released Yes Yes No Environmental Aquatic Unclassified Aquaculture Unclassified Aquarium water 41.87 -87.61 8886791 19366 86 6 147 1 0.0 Metagenome 3300028745 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_3 DOE Joint Genome Institute (JGI) 3300028745 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 1080012215 2055276 336 26 506 43 SRX5356674 Unrestricted 0.0 Metagenome 3300036910 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 E2 1-5 DOE Joint Genome Institute (JGI) 3300036910 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0468 359821777 814804 381 3 656 4 SRX8138855 Unrestricted 7.25 Metagenome 3300008301 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 763820215 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008301 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 59026346 75141 49 0 73 0 0.0 Metagenome 3300024328 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 44D DOE Joint Genome Institute (JGI) 3300024328 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 305159084 578187 179 33 253 79 SRX4465389 Unrestricted 20.27 Metagenome 3300000835 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 28JUN2007 epilimnion v8 (version 8) DOE Joint Genome Institute (JGI) 3300000835 Metagenome Analysis released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 2326395 2504 0 0 0 0 Unrestricted 0.0 Metagenome 3300050238 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Butler, South Dakota, USA - 99_897_SD_DR_0cm_c3_T1_18O DOE Joint Genome Institute (JGI) 3300050238 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 45.27223 -97.8369 356449431 658451 170 6 308 5 Restricted 17.48 Metagenome 3300049661 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control DOE Joint Genome Institute (JGI) 3300049661 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 501528240 1108936 644 32 1202 58 Unrestricted 12.91 Metagenome 3300042183 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A8 University of California, Davis 3300042183 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 181326797 513454 261 11 503 17 0.0 Metagenome 3300008599 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 158742018 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008599 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 143165224 184931 123 0 210 0 0.0 Metagenome 3300060590 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210530_03_21 DOE Joint Genome Institute (JGI) 3300060590 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 623622973 940415 276 105 393 164 Unrestricted 29.63 Metagenome 3300031699 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-20 DOE Joint Genome Institute (JGI) 3300031699 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh sediment 42.722 -70.847 663244708 1341850 541 4 842 8 SRX6458653 Unrestricted 11.36 Metagenome 3300029535 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI022000-43 Beijing Genomics Institute (BGI) 3300029535 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 112011659 159479 109 0 161 0 0.0 Metagenome 3300005397 *Microbiome Finished mock_test mock_sequence University of California, San Diego 3300005397 Metagenome Analysis idba released per JGI data release policy No Yes vseguritan@humanlongevity.com Victor Seguritan No Host-associated Mammals: Human Large intestine Digestive system Fecal gut 66059427 69834 126 0 122 0 0.0 Metagenome 3300069249 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from National Grasslands LBJ, Texas, USA - CLBJ_001-M-20210506-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069249 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Grasslands Soil Unclassified Terrestrial soil 33.39799 -97.56834 3434043103 8727174 2063 63 4092 124 0.0 Metagenome 3300002977 *Microbiome Permanent Draft Biogas reactor microbial communities from Swedish University of Agricultural Sciences, Alnarp, Sweden, and As, Norway that are enriched on cellulose Biogas reactor microbial communities from Swedish University of Agricultural Sciences, Alnarp, Sweden 3300002977 Metagenome Analysis released per submitter No Yes phil.pope@nmbu.no Phil Pope Yes 27822555 Engineered Bioreactor Biogas Anaerobic Unclassified Biogas reactor 55.656904 13.082968 134240476 160424 6 0 22 0 0.0 Metagenome 3300028235 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen5, Rep 2, Chloramphenicol (External Submission) DOE Joint Genome Institute (JGI) 3300028235 Metagenome Analysis No Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 191910112 269370 41 36 69 67 Unrestricted 0.0 Metagenome 3300041065 *Microbiome Permanent Draft Contaminated soil microbial communities from Humid Pampas, Chascomus Partido, Argentina Contaminated soil microbial communities from Humid Pampas, Chascomus Partido, Argentina - L3_418 Illumina 3300041065 Metagenome Analysis Megahit v. 1.2.10 released by JGI data releasing policy No Yes valeria.imperato@uhasselt.be Valeria Imperato No Environmental Terrestrial Unclassified Soil Agricultural land Contaminated soil -35.5787 -58.0138 9210743 21278 21 0 26 1 0.0 Metagenome 3300029840 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35505 Beijing Genomics Institute (BGI) 3300029840 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 178448464 210928 151 0 182 0 0.0 Metagenome 3300038387 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18A_2b_8_3 mgh University of Alberta 3300038387 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 61672681 79180 35 4 51 5 0.0 Metagenome 3300011980 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S01-01-D University of California, Los Angeles 3300011980 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 186196375 306975 174 0 261 2 SRX860986 0.0 Metagenome 3300041945 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from the Rocky Mountain Biological Laboratory (RMBL), Gothic, Colorado, United States - 2009WM_10W DOE Joint Genome Institute (JGI) 3300041945 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9595 -106.99 112596264 357253 239 11 426 31 SRX14812272 Unrestricted 6.4 Metagenome 3300024986 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_500_biof (SPAdes) DOE Joint Genome Institute (JGI) 3300024986 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 306104122 372134 110 3 117 4 SRX2866426, SRX2866425 Unrestricted 0.0 Metagenome 3300000540 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (80 cm)-Day0 454 University of Tennessee 3300000540 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 0 0 0 0 0 0 0.0 Metagenome 3300026644 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1118 (SPAdes) DOE Joint Genome Institute (JGI) 3300026644 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 3312861 10972 34 4 60 4 SRX3311888 Unrestricted 0.0 Metagenome 2209111002 *Microbiome Permanent Draft Benzene-degrading bioreactor microbial communities from Toronto, Ontario, Canada, that are methanogenic Benzene-degrading bioreactor microbial communities from Toronto, Ontario, Canada, that are methanogenic - MIRA/Phrap_Assembly DOE Joint Genome Institute (JGI) 2209111002 Metagenome Analysis MIRA/Phrap released per Simon -- IMGSUPP2953 No Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioremediation Benzene Hydrocarbon Bioreactor Benzene-degrading bioreactor 49.66 -79.4 27716121 47376 26 0 44 0 0.0 Metagenome 3300009299 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T14 (2) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2) Shell Corporation 3300009299 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 128598756 435456 141 0 433 1 0.0 Metagenome 3300041018 *Microbiome Draft Marine sediment microbial community from Mar Menor, Spain Marine sediment microbial community from Mar Menor, Spain - M152 FISABIO - Public Health 3300041018 Metagenome Analysis Megahit v. 1.1.1-2 released by JGI data releasing policy No Yes borja.aldeguer@ua.es Borja Aldeguer No Environmental Aquatic Coastal Marine Sediment Marine sediment 37.67303698 -0.78374087 1909269180 3975471 841 20 1657 35 0.0 Metagenome 3300056817 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Activated sludge microbial communities from bioreactor in WWTP, Madison, WI, USA - RS_2021-07-01_SampleA DOE Joint Genome Institute (JGI) 3300056817 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.03331 -89.35633 387986546 424923 146 24 162 26 Unrestricted 11.49 Metagenome 3300001989 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 DOE Joint Genome Institute (JGI) 3300001989 Metagenome Analysis Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn rhizosphere 42.3948 -85.3738 585198443 1474782 1006 90 1980 159 SRX1990935 Unrestricted 0.0 Metagenome 3300009610 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 DOE Joint Genome Institute (JGI) 3300009610 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9232 -106.9519 742568967 1464570 542 41 989 77 SRX2754306 Unrestricted 0.0 Metagenome 3300069225 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Konza Prairie Bio Station, Kansas, USA - KONZ_042-M-20210720-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069225 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Grasslands Soil Unclassified Terrestrial soil 39.09957 -96.564404 1962666852 4374730 934 13 1656 23 0.0 Metagenome 3300000296 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM337 Beijing Genomics Institute (BGI), Macrogen 3300000296 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 97421688 214265 507 3 853 2 0.0 Metagenome 3300027737 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027737 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 51.62 -128.09 561694567 1358283 382 93 685 171 SRX2575204 Unrestricted 0.0 Metagenome 3300001655 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN584 DOE Joint Genome Institute (JGI) 3300001655 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.070856 -96.582821 2714 9 1 0 1 0 SRX1986969 Unrestricted 0.0 Metagenome 3300046370 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_180905.NP2 DOE Joint Genome Institute (JGI) 3300046370 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 713386988 1453107 454 92 737 135 Unrestricted 15.97 Metagenome 3300001967 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Devil's Crown, Floreana Island, Equador - GS027 J. Craig Venter Institute (JCVI) 3300001967 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine -1.2161111 -90.422775 155936908 288098 149 1 216 1 0.0 Metagenome 3300044463 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_16 DOE Joint Genome Institute (JGI) 3300044463 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 589074794 1488182 461 8 802 13 Unrestricted 7.36 Metagenome 3300048634 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from North Pacific Ocean - CTD010A DOE Joint Genome Institute (JGI) 3300048634 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 9.840142 -104.2918 683381073 1127926 338 85 492 130 Unrestricted 33.98 Metagenome 3300033828 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 P1 1-5 DOE Joint Genome Institute (JGI) 3300033828 Metagenome Analysis spades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0471 265359776 597585 154 25 288 51 SRX8138478, SRX8138477 Unrestricted 0.0 Metagenome 3300047543 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Athens, Georgia, United States - middleoconee_2019_sw_WHONDRS-S19S_0011 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047543 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 33.9556 -83.4376 111671970 199256 150 22 254 31 Unrestricted 0.0 Metagenome 3300027458 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE17-B (SPAdes) DOE Joint Genome Institute (JGI) 3300027458 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.32 13715273 38559 80 5 147 7 SRX1991450 Unrestricted 0.0 Metagenome 3300013014 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES006 metaG DOE Joint Genome Institute (JGI) 3300013014 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 46.008 -89.701 2587152849 4789062 832 545 1207 859 SRX3566129 Unrestricted 11.95 Metagenome 3300006289 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 809635352 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006289 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 131531361 186196 95 0 138 0 0.0 Metagenome 3300012307 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100114 University of Pennsylvania 3300012307 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9565700 23039 13 0 18 0 SRX756716 0.0 Metagenome 3300042932 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-320 Genome Quebec 3300042932 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.411549 -119.250032 884279584 1962879 311 47 457 79 0.0 Metagenome 3300038555 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Kaiparowitsia implicata GSE-PSE-MK54-09C and co-occurring heterotrophs from soil from Kaiparowits Plateau, Grand Staircase Escalante National Monument, UT, United states - 20190625_23 DOE Joint Genome Institute (JGI) 3300038555 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Unclassified Soil Unclassified Soil 37.543 -111.6405 36621891 39123 14 0 14 0 SRX9674663 Unrestricted 341.68 Metagenome 3300001047 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN624 DOE Joint Genome Institute (JGI) 3300001047 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 64505 213 12 0 28 0 SRX1987001 Unrestricted 0.0 Metagenome 3300045934 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P34SSC2_190917_f DOE Joint Genome Institute (JGI) 3300045934 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 674344940 1067485 224 3 360 6 SRX20650061 Unrestricted 11.0 Metagenome 3300038369 *Microbiome Permanent Draft Marine microbial communities from the Gulf of Mexico to study Ocean acidification Marine microbial communities from the Gulf of Mexico to study Ocean acidification - EN_52 - GOM52 Georgia Institute of Technology 3300038369 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 26.005861 -92.366056 157430430 304741 202 3 357 2 0.0 Metagenome 3300002123 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_3 DOE Joint Genome Institute (JGI) 3300002123 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 705302125 1756721 1050 4 1796 12 SRX1991077 Unrestricted 0.0 Metagenome 3300014246 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 175_L2_2014-4-30 San Diego State University 3300014246 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 2161453 7363 22 11 42 32 0.0 Metagenome 3300043407 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Columbia River, Richland, Washington, USA - columbia_2019_sw_WHONDRS-S19S_0036 DOE Joint Genome Institute (JGI) 3300043407 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 46.3727 -119.2719 450824352 744925 256 126 361 161 Unrestricted 23.33 Metagenome 3300043688 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - Rondonia_Pasture_1_B100m DOE Joint Genome Institute (JGI) 3300043688 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.163 -62.836 593526090 1633624 566 8 986 15 Unrestricted 7.06 Metagenome 3300040554 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_021-M-20170619-COMP-DNA1 Battelle Memorial Institute 3300040554 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 2605781 9063 17 3 36 3 0.0 Metagenome 3300069338 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Jones Ecological Research Center, Southeast, GA, USA - JERC_006-M-20170724-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069338 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.19484 -84.46861 11482500 37322 81 4 136 10 0.0 Metagenome 3300002504 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Neocapritermes taracua P4 segment gut microbial communities from Petit-Saut dam, French Guiana - Nt197 P4 DOE Joint Genome Institute (JGI) 3300002504 Metagenome Analysis Yes Yes karen.rossmassler@gmail.com, brune@mpi-marburg.mpg.de Karen Rossmassler, Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 5.0626 -53.0462 1536697946 3872862 1183 47 2159 22 SRX2554923 Unrestricted 0.0 Metagenome 3300048930 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Sediment microbial communities from brackish wetlands in San Jose, California, USA - ROC3_1 DOE Joint Genome Institute (JGI) 3300048930 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Intertidal zone Marine Salt marsh sediment Sediment 37.427598 -121.938678 1930078717 2676949 593 95 744 133 Unrestricted 26.07 Metagenome 3300001899 *Microbiome Permanent Draft Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils (2) Desert soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils - Control dataset for fatty acid perturbed soil, Sample 5 3300001899 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Terrestrial Unclassified Soil Desert Grassland soil 23.850674 69.734802 0 0 0 0 0 0 0.0 Metagenome 3300031902 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2 DOE Joint Genome Institute (JGI) 3300031902 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0477 7368465929 17280282 2888 200 4838 353 SRX5801502 Unrestricted 6.93 Metagenome 3300021375 *Microbiome Permanent Draft Coastal seawater microbial communities from Pivers Island, North Carolina, United States Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132 DOE Joint Genome Institute (JGI) 3300021375 Metagenome Analysis spades v. 3.11.1-check Yes Yes dana.hunt@duke.edu Dana Hunt No Environmental Aquatic Coastal Marine Unclassified seawater 34.7181 -76.6707 959615311 2026047 521 114 797 204 SRX4010415 Unrestricted 16.14 Metagenome 3300070366 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dead Lake, Alabama, USA - DELA_040-M-20160824-COMP-DNA1 3300070366 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 14154030 44918 70 3 109 4 0.0 Metagenome 3300046692 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere DOE Joint Genome Institute (JGI) 3300046692 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5878 -123.1939 749517348 1206741 313 57 489 73 Unrestricted 21.58 Metagenome 3300033112 *Microbiome Permanent Draft Microbial communities from various environments in Magnetic Island Reef, Townsville, Australia Sponge tissue microbial communities from Magnetic Island Reef, Townsville, Australia - 36405 AGRF 3300033112 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes b.glasl@aims.gov.au Bettina Glasl No Host-associated Porifera Unclassified Sponge Unclassified Sponge tissue -19.1531 146.8641 679040100 1530528 221 3 365 10 0.0 Metagenome 3300004113 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - COGITO 998_met_12 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300004113 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes hteeling@mpi-bremen.de Hanno Teeling No Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Pelagic marine 53.9944 6.8905 2131370674 6051073 689 85 1487 168 SRX2582855 Unrestricted 0.0 Metagenome 3300011890 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00374 Weill Cornell Medical College 3300011890 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.92 45495996 79962 20 0 36 0 SRX822345 0.0 Metagenome 3300050349 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-P1(3) 10-14 DOE Joint Genome Institute (JGI) 3300050349 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.355 19.0437 945964949 1405901 218 7 352 16 Restricted 13.81 Metagenome 3300031222 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #780 DOE Joint Genome Institute (JGI) 3300031222 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4563 78.1898 483929831 822238 140 33 178 38 SRX5649540 Unrestricted 41.6 Metagenome 3300037217 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 P-1-S DOE Joint Genome Institute (JGI) 3300037217 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0473 906273091 1860946 391 34 647 57 SRX8147075 Unrestricted 7.68 Metagenome 3300035435 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_1_6_6 mgh University of Alberta 3300035435 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 51709294 68383 32 0 50 0 0.0 Metagenome 3300049682 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F11_B_3_drought DOE Joint Genome Institute (JGI) 3300049682 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 161366619 371722 345 25 623 52 Unrestricted 10.78 Metagenome 3300027851 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater microbial communities in response to fracking from Pennsylvania, USA - Allegheny Zone_MetaG_DW_15 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027851 Metagenome Analysis spades v. 3.11.1 Yes Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole watersheds 40.0132 -79.0717 1417643121 2692626 867 32 1419 59 SRX2745322 Unrestricted 0.0 Metagenome 3300037864 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - SOY_080817 DOE Joint Genome Institute (JGI) 3300037864 Metagenome Analysis metaspades v. 3.13.0 Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.8854 -89.3208 154755314 476896 402 15 801 26 SRX9382434 Unrestricted 6.41 Metagenome 3300026060 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleA_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026060 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.107521 -121.649681 42540038 122999 143 9 214 17 SRX7188790 Unrestricted 0.0 Metagenome 3300038768 *Microbiome Permanent Draft Farm soil microbial communities from Tibetan Plateau, China Farm soil microbial communities from Tibetan Plateau, China - G5U Beijing Institute of Life Science, Chinese Academy of Sciences 3300038768 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Unclassified Soil Farm Farm soil 17684408 55580 45 3 51 5 SRX372804 0.0 Metagenome 3300011684 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00928 Weill Cornell Medical College 3300011684 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.95 10027535 11076 5 0 7 0 SRX822891 0.0 Metagenome 3300039165 *Microbiome Permanent Draft Organic and conventional farm associated microbial communities from Canada and USA Wastewater microbial communities from Conventional dairy farm in Colorado, USA - WW31 Colorado State University 3300039165 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 40.7 -105.0 111351121 214979 150 1 298 1 0.0 Metagenome 3300051660 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_USB_042 (version 2) DOE Joint Genome Institute (JGI) 3300051660 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 45721398 45886 45 0 43 0 SRX12727626, SRX12727625 Restricted 0.0 Metagenome 3300041786 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - TR_31_wk_2 DOE Joint Genome Institute (JGI) 3300041786 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9664 -107.059 141823982 431032 270 7 488 17 SRX14808256 Unrestricted 7.79 Metagenome 3300021596 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-100-LTR Downsampled Assembly University of Michigan 3300021596 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.8271 -83.1945 8.578 780687398 797765 93 81 117 104 0.0 Metagenome 3300040430 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_009-M-20170829-COMP-DNA1 Battelle Memorial Institute 3300040430 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 4266393 12296 26 5 43 4 0.0 Metagenome 3300036922 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5SP15 DOE Joint Genome Institute (JGI) 3300036922 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 746497291 1743970 649 15 1080 28 SRX8379444 Unrestricted 6.69 Metagenome 3300014590 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01245 Weill Cornell Medical College 3300014590 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.61 -73.97 21846148 27456 4 0 6 0 SRX823200 0.0 Metagenome 3300026940 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A1-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026940 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 21917726 71958 89 2 178 2 SRX1990530 Unrestricted 0.0 Metagenome 3300039118 *Microbiome Permanent Draft Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA - pen6 University of Minnesota 3300039118 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic River Freshwater Unclassified Freshwater 44.917867 -93.128967 4519116 4561 5 0 3 0 0.0 Metagenome 3300038715 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample28 King Abdulaziz City for Science and Technology (KACST) 3300038715 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 23.36 37.3 37366688 82135 35 0 74 0 SRX1097595 0.0 Metagenome 3300055464 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.4W.13 SIP fraction DOE Joint Genome Institute (JGI) 3300055464 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 215742765 360979 182 16 291 39 Unrestricted 22.73 Metagenome 3300042225 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D185_2 DOE Joint Genome Institute (JGI) 3300042225 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 150181798 219585 107 9 166 17 Unrestricted 73.81 Metagenome 3300049568 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 DOE Joint Genome Institute (JGI) 3300049568 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.40849 -82.168434 1211148777 2007848 518 17 861 33 Unrestricted 15.12 Metagenome 3300006143 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t14_693P_control - viral_metagenome University of Texas Southwestern Medical Center 3300006143 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 106644884 211090 82 0 136 0 0.0 Metagenome 3300020244 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000446 (ERX556020-ERR599149) CEA Genoscope 3300020244 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -20.3356 -3.2659 133462649 306696 109 23 229 29 0.0 Metagenome 3300007238 *Microbiome Permanent Draft Non-marine hypersaline water viral communities from Salar of UYUNI 2014 (Chile) Non-marine hypersaline water viral communities from Salar Uyuni, Bolivia - ZN24 UYUNI 14 University of Alicante 3300007238 Metagenome Analysis IDBA 1.1.1 PRE correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline water -20.333333 -67.7 88111586 270294 80 0 2 0 0.0 Metagenome 3300020303 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000745 (ERX556095-ERR599124) CEA Genoscope 3300020303 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -30.3455 -43.2924 122887323 307185 184 17 334 33 0.0 Metagenome 3300025176 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0626 (SPAdes) DOE Joint Genome Institute (JGI) 3300025176 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -28.62 -11.8 42906141 88675 49 27 90 38 SRX1982981 Unrestricted 0.0 Metagenome 3300000667 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 43 DOE Joint Genome Institute (JGI) 3300000667 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 3501267 11754 20 0 38 0 SRX4340891 Unrestricted 0.0 Metagenome 3300020422 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine prokaryotic communities collected during Tara Oceans survey from station TARA_076 - TARA_B100000513 (ERX555999-ERR599126) CEA Genoscope 3300020422 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -21.0073 -35.3344 951334590 2827593 568 184 871 484 0.0 Metagenome 3300041550 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Bulk soil microbial community from Lincoln, Canterbury, New Zealand - BS18_10 MetaG AgResearch, New Zealand, Mosgeil 3300041550 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Environmental Terrestrial Unclassified Soil Agricultural land Dairy farm pasture soil -43.648506 172.343549 1268884859 3048721 266 35 1094 67 0.0 Metagenome 3300014777 *Microbiome Permanent Draft Sludge phage communities from EBPR wastewater reactor plant in Australia Sludge phage communities from EBPR wastewater reactor plant in Australia - SBR8-phage Australian Centre for Ecogenomics 3300014777 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Biological phosphorus removal Nutrient removal Activated sludge Sludge -27.485973 153.190699 76820360 179527 50 1 97 0 SRX201395 0.0 Metagenome 3300001782 *Microbiome Permanent Draft Marine sediment microbial communities from White Oak River estuary, North Carolina Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR_deep_samples DOE Joint Genome Institute (JGI) 3300001782 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date No Yes acidophile@gmail.com Brett Baker Yes 26824177 Environmental Aquatic Intertidal zone Marine Sediment Marine sediment 34.6478111 -77.1112083 449385852 488203 88 3 124 0 0.0 Metagenome 3300042905 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2013-rr0204 DOE Joint Genome Institute (JGI) 3300042905 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1523374839 2294304 494 57 688 83 Unrestricted 17.53 Metagenome 3300000955 *Microbiome Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Iowa, Native Prairie soil v7 (version 7) DOE Joint Genome Institute (JGI) 3300000955 Metagenome Analysis Artifact filter, partition at k=32, assemble with Velvet at k19-45, Minimus2 released based on JGI ITS Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.0042816 -77.1012173 6.2 3157391525 11764439 3564 293 7688 491 Unrestricted 0.0 Metagenome 3300049515 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_B_5_drought DOE Joint Genome Institute (JGI) 3300049515 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 237354880 566655 422 11 841 22 Unrestricted 14.79 Metagenome 3300009686 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - groundupSSSS metaG DOE Joint Genome Institute (JGI) 3300009686 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca Ramunas Stepanauskas; Peter Dunfield No Environmental Aquatic Ice Freshwater Glacier Glacier valley 81.017 -81.583 977971402 1818470 873 26 1370 82 SRX3006942 Unrestricted 0.0 Metagenome 3300061671 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0494 Microbiome Insights 3300061671 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 239368534 358872 88 1 124 1 0.0 Metagenome 3300045445 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-534 Genome Quebec 3300045445 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 55.446225 -129.334999 1270561178 2758121 633 179 1028 323 0.0 Metagenome 3300035640 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_1_36_6 mgh University of Alberta 3300035640 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 77270665 96555 44 0 54 0 0.0 Metagenome 3300005467 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG DOE Joint Genome Institute (JGI) 3300005467 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 4771019155 12170895 2822 99 4862 175 SRX2745035 Unrestricted 0.0 Metagenome 3300025622 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_150m (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025622 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 371450361 730172 233 31 375 40 Unrestricted 0.0 Metagenome 3300000689 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 76 DOE Joint Genome Institute (JGI) 3300000689 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 6886850 20531 34 0 65 0 SRX4341375 Unrestricted 0.0 Metagenome 3300028202 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Site 232 with 3.0UM filter - spades J. Craig Venter Institute 3300028202 Metagenome Analysis Spades v. 3.11.1 Released per Simon Roux. Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater -68.4 78.18278 8.85 9717163 18168 3 2 4 3 0.0 Metagenome 3300043562 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains ecozone, Canada - Lake 08-202 Genome Quebec 3300043562 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.725929 -81.227067 1083368916 2480584 458 193 783 347 0.0 Metagenome 3300017781 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 46 SPOT_SRF_2013-08-14 DOE Joint Genome Institute (JGI) 3300017781 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 655928717 1488630 183 66 304 124 SRX5471850, SRX5471849, SRX5471848 Unrestricted 0.0 Metagenome 3300009137 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_16_30cm DOE Joint Genome Institute (JGI) 3300009137 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 7522465489 16616792 4744 77 7668 102 SRX2729060 Unrestricted 0.0 Metagenome 3300024910 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 82_HOW10 (SPAdes) DOE Joint Genome Institute (JGI) 3300024910 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 43075122 57533 29 2 24 2 SRX2721093 Unrestricted 0.0 Metagenome 3300040645 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Taiga, AK, USA - HEAL_010-O-20160802-COMP-DNA1 Battelle Memorial Institute 3300040645 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.87569 -149.21334 2137822 6559 22 3 29 8 0.0 Metagenome 3300026768 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Slide_host_7_15 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026768 Metagenome Analysis spades v. 3.11.1 Yes Yes jim.fredrickson@pnnl.gov; binskeep@montana.edu Jim Fredrickson; William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.7315 -110.7113 3 34967114 75907 16 1 18 0 SRX2753790 Unrestricted 0.0 Metagenome 3300070514 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_047-M-20180220-COMP-DNA1 Battelle Memorial Institute 3300070514 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 37.101658 -119.734564 6.25-6.43 2832721 9373 61 13 107 28 0.0 Metagenome 3300008455 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 686765762 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008455 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 64551292 93591 58 0 109 0 0.0 Metagenome 3300026715 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-A (SPAdes) DOE Joint Genome Institute (JGI) 3300026715 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 16736043 56847 68 3 117 5 SRX2575550 Unrestricted 0.0 Metagenome 3300041434 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass leaf microbial community from Lincoln, Canterbury, New Zealand - RGL18_11 MetaG AgResearch, New Zealand, Mosgeil 3300041434 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 500962002 820932 93 909 201 1157 0.0 Metagenome 3300054099 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_10_40 re-annotation DOE Joint Genome Institute (JGI) 3300054099 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 275786765 520398 113 1 206 3 SRX3003283 0.0 Metagenome 3300015162 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Storglaciaren, Tarfala, Sweden (Sample st-4c, rock/ice/stream interface) University of Bristol 3300015162 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.900879 18.43474 6.3 175258662 374176 171 13 297 27 0.0 Metagenome 3300011347 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100550 University of Pennsylvania 3300011347 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 11316022 22717 19 6 28 11 SRX756204 0.0 Metagenome 3300011916 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Fish gut prokaryotic and eukaryotic communities from New York, USA: aquatic fish gut animal -GCSS-00 Weill Cornell Medical College 3300011916 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Host-associated Fish Intestine Digestive system Unclassified Fish gut 40.764 -73.957 64339535 99817 51 0 43 1 SRX823474 0.0 Metagenome 3300044850 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - DOSP4-9-18-19 DOE Joint Genome Institute (JGI) 3300044850 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 36.9963 -120.6491 676797451 1760220 670 41 1115 72 Restricted 7.76 Metagenome 3300042739 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from Lilliput hydrothermal vent, Atlantic Ocean - BspSym_Li_4_5-1 Re-assembly Max Planck Institute for Marine Microbiology 3300042739 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills -9.5481672 -13.2088327 156934058 155190 3 7 19 5 ERX3367177 0.0 Metagenome 2058419022 *Microbiome Permanent Draft Feline fecal microbial communities from Illinois, USA cat metagenome 12 Research and Testing Laboratory 2058419022 Metagenome Analysis seqman NGEN transcriptome released per JGI data release policy No Yes sdowd@pathogenresearch.org Scot E. Dowd No Host-associated Mammals Large intestine Digestive system Fecal Feline fecal 40.11 -88.4 85250936 248904 171 0 307 0 0.0 Metagenome 3300045506 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Cordillera ecozone, Canada - Lake 14-571 Genome Quebec 3300045506 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 64.848457 -138.347406 1218620774 2825282 684 202 1065 392 0.0 Metagenome 3300002007 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot15-2 3300002007 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 4742836 27181 121 5 226 10 0.0 Metagenome 3300012164 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT730_2 DOE Joint Genome Institute (JGI) 3300012164 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9229 -106.9517 195815606 446977 213 17 471 20 SRX3368948 Unrestricted 0.0 Metagenome 3300040057 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 074B_R1 University of Maryland 3300040057 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.52648 19.01307 13291333 18927 25 1 30 3 0.0 Metagenome 3300003314 *Microbiome Permanent Draft Hypersaline viral and bacterial communities from Bras del Port, Santa Pola, Spain Hypersaline bacterial communities from Bras del Port, Santa Pola, Spain - Pena Hueca_Prokaryotes Lifesequencing S.L. 3300003314 Metagenome Analysis released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline samples 42.65689 -2.670449 229217634 444038 404 8 747 1 0.0 Metagenome 3300006031 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_02_20cm DOE Joint Genome Institute (JGI) 3300006031 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2147548459 6609470 2497 134 4137 200 SRX2518753, SRX2518752 Unrestricted 0.0 Metagenome 3300035402 *Microbiome Permanent Draft Extreme environments viral communities from various locations Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 490_3282 DOE Joint Genome Institute (JGI) 3300035402 Metagenome Analysis spades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified filtered seawater 13.3498 -44.8801 74182828 220418 28 4 47 7 SRX7709947 Unrestricted 123.62 Metagenome 3300013831 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A21_5cm_6M University of Tennessee 3300013831 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 179168327 591875 94 4 212 8 SRX710587 0.0 Metagenome 3300002771 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB DOE Joint Genome Institute (JGI) 3300002771 Metagenome Analysis Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.9082 -79.0499 35268220 52594 42 0 76 0 SRX1991086 Unrestricted 0.0 Metagenome 3300057179 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - LE-8 DOE Joint Genome Institute (JGI) 3300057179 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.703 -83.254 490264017 978772 335 55 511 91 Unrestricted 23.25 Metagenome 3300022495 *Microbiome Permanent Draft Human saliva microbial communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva microbial communities from oral cavities of IgA immunodeficiency people from Alicante, Spain - individual 7 Autonomous University of Barcelona 3300022495 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.38 -0.51 58991602 74509 45 0 52 0 0.0 Metagenome 3300001544 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Cubitermes ugandensis P1 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P1 DOE Joint Genome Institute (JGI) 3300001544 Metagenome Analysis SOAPdenovo v. Version 1.05: testing... 2010 recovered per Tijana's request (5/7/15) Yes Yes brune@mpi-marburg.mpg.de Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 0.2917 34.856 1374800172 3372948 716 24 1304 38 SRX2553502, SRX2553503 0.0 Metagenome 3300022920 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_10_MG DOE Joint Genome Institute (JGI) 3300022920 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca; shallam@interchange.ubc.ca Sean Crowe; Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5847 -123.5008 824004398 1553511 422 92 554 172 SRX4481922 Unrestricted 28.7 Metagenome 3300025051 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection B3 (SPAdes) DOE Joint Genome Institute (JGI) 3300025051 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.53 -107.78 179926548 317765 185 12 269 18 SRX1990957 Unrestricted 0.0 Metagenome 3300038644 *Microbiome Draft Bras del Port CELL metagenomes September 2016 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CCAB CELL September 2016 FISABIO - Public Health 3300038644 Metagenome Analysis IDBA v. 1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline water 38.1912 -0.5947 204109626 331991 159 13 231 19 0.0 Metagenome 3300035064 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - T6-7 Autonomous University of Barcelona 3300035064 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 14681912 59983 161 0 298 0 0.0 Metagenome 3300037533 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18A_2b_16_3 mgh University of Alberta 3300037533 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 71363884 91792 34 2 52 2 0.0 Metagenome 3300045117 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_105m_2015 DOE Joint Genome Institute (JGI) 3300045117 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 1047052289 1836797 768 6 1335 12 Unrestricted 14.83 Metagenome 2044078003 *Microbiome Permanent Draft Switchgrass, Maize and Miscanthus rhizosphere microbial communities from University of Illinois Energy Farm, Urbana, IL Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL University of Illinois, Urbana-Champaign 2044078003 Metagenome Analysis No Yes lixz@illinois.edu Xiangzhen Li No Environmental Terrestrial Unclassified Soil Agricultural land Switchgrass, Maize and Miscanthus rhizosphere 40.109 -88.204 58125848 165002 56 0 85 0 0.0 Metagenome 3300022200 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3) (version 3) DOE Joint Genome Institute (JGI) 3300022200 Metagenome Analysis spades v. 3.11.1-check Yes Yes bcampb7@clemson.edu Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 38.8455 -76.4191 548776487 1330344 2 0 1 0 SRX3301745, SRX2753457, SRX3301744 Unrestricted 0.0 Metagenome 3300032062 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-90 DOE Joint Genome Institute (JGI) 3300032062 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh sediment 42.722 -70.847 795454788 1533637 672 5 1084 11 SRX6467952 Unrestricted 12.93 Metagenome 3300035323 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Marine sediment microbial communities from Algarve, Portugal - SD01 Euk Molecular Research LP (MR DNA) 3300035323 Metagenome Analysis Metawrap workflow v. 1.0.5 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Environmental Aquatic Oceanic Marine Sediment marine sediment 36.979778 -7.989111 161196 145 0 3 0 3 0.0 Metagenome 3300049755 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MB37 DOE Joint Genome Institute (JGI) 3300049755 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 375819679 1054518 648 18 1251 18 Unrestricted 8.55 Metagenome 3300027253 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1556A-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027253 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2022 -123.941 163036275 347379 177 19 319 27 Unrestricted 0.0 Metagenome 3300014001 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00218 Weill Cornell Medical College 3300014001 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.86 -73.91 16475223 26131 6 0 6 0 SRX822197 0.0 Metagenome 3300029397 *Microbiome Permanent Draft Electrode-associated soil and biofilms microbial communities from MFCs in Japan Anode biofilm microbial communities from acetate-fed MFC - AM-anode biofilm Tokyo University of Pharmacy and Life Sciences 3300029397 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Engineered Industrial production Bioanode Engineered product Biofilm Anode biofilm 35.638 139.3817 110244754 151413 69 4 85 3 DRX011531 0.0 Metagenome 3300044215 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T0 S DOE Joint Genome Institute (JGI) 3300044215 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.6691 -64.1676 311714982 758229 71 13 107 20 Unrestricted 56.7 Metagenome 3300005535 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG DOE Joint Genome Institute (JGI) 3300005535 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn rhizosphere 42.3948 -85.3738 5299398585 14094871 3922 274 6608 534 SRX2740495 Unrestricted 0.0 Metagenome 3300070754 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_002-M-20160729-COMP-DNA1 3300070754 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 2058659 6757 22 0 44 2 0.0 Metagenome 3300070321 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_041-O-20180731-COMP-DNA1 3300070321 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 32635039 98263 132 26 266 39 0.0 Metagenome 3300042673 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME27Oct2003-rd0076 DOE Joint Genome Institute (JGI) 3300042673 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 788044285 1240567 306 26 380 34 Unrestricted 23.49 Metagenome 3300042338 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME06Oct2015-rr0707 DOE Joint Genome Institute (JGI) 3300042338 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 737971989 1136097 368 105 501 166 Unrestricted 16.82 Metagenome 3300031935 *Microbiome Permanent Draft Microbial communities from the deep biosphere Mediterranean forest soil microbial communities from Voltri Massif, Liguria, Italy - LIG_BR2_2012 re-assembly Marine Biological Laboratory 3300031935 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Temperate forest Soil Bulk soil Mediterranean forest soil 44.597 8.7833 50336754 109999 50 3 102 6 SRX1055081 0.0 Metagenome 3300018484 *Microbiome Permanent Draft Bovine feces microbial communities from beef and dairy calves in Davis, CA, USA Bovine feces microbial communities from dairy calf in Davis, CA, USA - DMJL001K re-assembly QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018484 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes jxnliu@ucdavis.edu Jinxin Liu No Host-associated Mammals Large intestine Digestive system Fecal feces 38.5449 -121.7405 49457277 112176 78 1 198 1 0.0 Metagenome 3300026555 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction) DOE Joint Genome Institute (JGI) 3300026555 Metagenome Analysis metalrec/blasr v. metalrec version 1.0.2/blasr 1.3.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 2622619319 3878705 244 40 268 45 SRX4365317, SRX4365316, SRX4365315 Unrestricted 1.75 Metagenome 3300005148 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgLMA DOE Joint Genome Institute (JGI) 3300005148 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 170480052 601844 322 18 644 31 SRX2521232 Unrestricted 0.0 Metagenome 3300071058 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_015-O-20200114-COMP-DNA1 3300071058 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 13513439 42874 54 9 111 18 0.0 Metagenome 3300026369 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-A DOE Joint Genome Institute (JGI) 3300026369 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 85952477 219753 158 15 297 15 SRX4801779 Unrestricted 10.75 Metagenome 3300044268 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T44 S DOE Joint Genome Institute (JGI) 3300044268 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7305 -64.2716 348216170 817778 29 3 36 4 Unrestricted 48.25 Metagenome 3300022447 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1OPP1 JM58 AGRF 3300022447 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 48915249 82708 36 0 51 0 0.0 Metagenome 7000000013 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2 of subject 764325968 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000013 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 591093 1607 0 0 0 0 0.0 Metagenome 3300032129 *Microbiome Permanent Draft Extreme environments viral communities from various locations Cryopeg brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - CBIW 2018 DOE Joint Genome Institute (JGI) 3300032129 Metagenome Analysis spades v. 3.12.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Coastal Marine Unclassified cryopeg brine 71.2944 -156.7153 160878516 282386 75 1 115 0 SRX5809205 Unrestricted 257.78 Metagenome 2070309006 *Microbiome Permanent Draft Wastewater viral communities from wastewater treatment facility in Singapore AS-dedpulicated data University of Illinois, Urbana-Champaign 2070309006 Metagenome Analysis not assmebled released per JGI data release policy No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Wastewater Dissolved organics (anaerobic) Nutrient removal Activated sludge Wastewater 1.332 103.756 63808837 202721 10 0 15 0 0.0 Metagenome 3300051376 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - ATCR2D-14 DOE Joint Genome Institute (JGI) 3300051376 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 155570755 295032 202 9 323 15 Unrestricted 60.97 Metagenome 3300008363 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764305738 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008363 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 102456008 144007 79 0 109 0 0.0 Metagenome 3300025907 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025907 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 2478258169 6068236 1465 63 2516 119 SRX2740375 Unrestricted 0.0 Metagenome 3300025691 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC115_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025691 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu Yes 28386012 Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 22.28 114.17 503514851 918573 550 20 789 26 SRX2339074 Unrestricted 0.0 Metagenome 3300049603 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA39 DOE Joint Genome Institute (JGI) 3300049603 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 216508484 594157 344 4 621 3 Unrestricted 6.51 Metagenome 3300048808 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 P1 10-14 DOE Joint Genome Institute (JGI) 3300048808 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.0471 557254072 850791 142 3 241 4 Restricted 12.15 Metagenome 3300023710 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen5, Rep 3 Spades (v2) (version 2) DOE Joint Genome Institute (JGI) 3300023710 Metagenome Analysis spades v. 3.11.1-check No Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4149 -119.841 300159044 475482 259 6 395 18 SRX4038239 Unrestricted 0.0 Metagenome 3300037585 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037585 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -16.21 -76.63 575124072 1325918 58 0 98 0 SRX3197405, SRX3197406 Unrestricted 0.0 Metagenome 3300028991 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 281_B Beijing Genomics Institute (BGI) 3300028991 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 44440613 50377 32 0 34 0 ERX491069 0.0 Metagenome 3300025227 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in- M7 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025227 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 40111832 132197 201 11 379 25 SRX2553554 Unrestricted 0.0 Metagenome 3300028607 *Microbiome Permanent Draft Deep ocean water column microbial communities from Yap Trench, western Pacific Ocean Seawater microbial communities from Yap Trench, western Pacific Ocean - 37I-Yap-CTD02-5000m 2000bp_Newsun Novogene 3300028607 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Abyssopelagic Marine Unclassified seawater 9.87 138.5 306533450 397450 63 4 74 5 0.0 Metagenome 3300028488 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_2000m DOE Joint Genome Institute (JGI) 3300028488 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified marine 50.0 -145.0 462983251 1027885 292 51 460 66 SRX5244621 Unrestricted 25.37 Metagenome 3300014618 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00461 Weill Cornell Medical College 3300014618 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.69 -73.98 16536371 31625 16 0 21 0 SRX822430 0.0 Metagenome 3300037357 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPN1-1-M DOE Joint Genome Institute (JGI) 3300037357 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3569 19.0502 552917698 899804 173 7 281 13 SRX9097214 Unrestricted 21.21 Metagenome 3300070670 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Virginia, USA - BLAN_004-M-20200715-COMP-DNA1 3300070670 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 5102731 16795 55 2 88 6 0.0 Metagenome 3300031983 *Microbiome Permanent Draft Microbial communities from the deep biosphere Subseafloor sediment microbial communities from the Andaman Sea, Indian Ocean - Site17A_40mbsf re-assembly The Marine Biological Laboratory 3300031983 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Sediment Marine Unclassified Sediment 11.2811 93.1 66310937 164814 69 16 106 26 SRX342191, SRX986763 0.0 Metagenome 3300053733 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 endosphere DOE Joint Genome Institute (JGI) 3300053733 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.120845 -123.269575 221548390 430938 104 32 168 52 Unrestricted 12.13 Metagenome 3300029345 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Indian Ocean - SCH1 Michigan State University 3300029345 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 1.26600833 103.8333333 71227484 201284 38 2 101 5 0.0 Metagenome 3300005583 *Microbiome Permanent Draft Freshwater lentic microbial communities from the great Laurentian Lakes, MI, USA for biogeochemical studies Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF DOE Joint Genome Institute (JGI) 3300005583 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified Freshwater lentic 44.5046 -83.045851 684282451 1796921 497 22 764 50 SRX2577500 Unrestricted 0.0 Metagenome 3300000262 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_1300 DOE Joint Genome Institute (JGI) 3300000262 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 48.65 -126.666667 130918350 281305 133 9 259 8 Unrestricted 0.0 Metagenome 3300013977 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00558 Weill Cornell Medical College 3300013977 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.67 -73.97 10003510 11136 4 0 11 0 SRX822525 0.0 Metagenome 3300061643 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Guanica State Forest and Biosphere Reserve, Puerto Rico - GUAN_004-M-20210922-comp-1 DOE Joint Genome Institute (JGI) 3300061643 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tropical forest Soil Unclassified Terrestrial soil 17.969254 -66.85267 1906545925 3368003 539 14 1002 20 Unrestricted 19.22 Metagenome 3300009701 *Microbiome Permanent Draft Host-associated microbial communities from peat moss Sphagnum species from Minnesota, USA Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum fallax MG DOE Joint Genome Institute (JGI) 3300009701 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes joel.kostka@biology.gatech.edu Joel Kostka No Host-associated Plants Unclassified Peat moss Unclassified Host-associated 47.5028 -93.4828 1755413055 2872909 880 460 1167 840 SRX3006923 Unrestricted 0.0 Metagenome 3300006171 *Microbiome Finished Saline water microbial communities from Bras del Port Salterns, Alicante, Spain Saline water microbial communities from Bras del Port Salterns, Alicante, Spain - SS19 GATC-Biotech AG, Konstanz, Germany 3300006171 Metagenome Analysis Newbler released per PI No Yes redcancerbero@gmail.com, alm067@ucsd.edu Alvaro M. Plominsky No Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Unclassified salt cristalyzer pond 38.3852246 -0.5132249 28796629 60223 39 0 70 0 0.0 Metagenome 3300000775 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 03JUN2009 hypolimnion DOE Joint Genome Institute (JGI) 3300000775 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu, tmcmahon@engr.wisc.edu; rrmalmstrom@lbl.gov Katherine McMahon, Katherine McMahon; Rex Malmstrom Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300014665 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01345 Weill Cornell Medical College 3300014665 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.85 -73.82 34780695 48004 16 0 17 0 SRX823285 0.0 Metagenome 3300020491 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 19JUL2008 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020491 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 43192318 93879 48 9 81 13 SRX3310667 Unrestricted 0.0 Metagenome 3300014957 *Microbiome Permanent Draft Aquatic microbial communities from drinking water treatment system in Nanjing, China Aquatic microbial communities from drinking water treatment system in Nanjing, China - Disinfected water - DW Nanjing University 3300014957 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Drinking water Freshwater Unclassified Aquatic 86615468 216208 100 14 165 29 SRX130436 0.0 Metagenome 3300057039 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M2L_18_20 DOE Joint Genome Institute (JGI) 3300057039 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0084363 -81.5683388 843442852 1503810 552 5 966 11 Unrestricted 14.5 Metagenome 3300056780 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB39 DOE Joint Genome Institute (JGI) 3300056780 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 41401966 104377 165 5 352 5 Restricted 16.88 Metagenome 3300012628 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100651 University of Pennsylvania 3300012628 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 21992690 51899 26 0 37 0 SRX756443 0.0 Metagenome 3300070974 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_046-M-20190716-COMP-DNA1 3300070974 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 5886765 19549 37 1 63 2 0.0 Metagenome 3300046666 *Microbiome Permanent Draft Soil microbial communities from Blodgett Forest Research Station, California, USA Soil microbial communities from Blodgett Forest Research Station, California, USA - BWE201406032C1020 DOE Joint Genome Institute (JGI) 3300046666 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.9122 -120.6612 178760593 333290 251 48 494 68 Unrestricted 22.22 Metagenome 3300070392 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_034-O-20180709-COMP-DNA1 3300070392 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 169852457 444522 152 25 237 50 0.0 Metagenome 7000000561 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763860675 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000561 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 59860823 113691 0 0 0 0 0.0 Metagenome 3300030207 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_064 - TARA_R100000322 CEA Genoscope 3300030207 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -29.5019 37.9889 291759505 581984 41 0 50 0 0.0 Metagenome 3300050128 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim2 20-24 DOE Joint Genome Institute (JGI) 3300050128 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.353634 19.04734 686098761 1034146 172 16 303 21 Restricted 12.89 Metagenome 3300028881 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116 DOE Joint Genome Institute (JGI) 3300028881 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.91721605 -106.9559947 1103077163 2696486 480 18 847 30 SRX5354614 Unrestricted 10.92 Metagenome 3300045497 *Microbiome Permanent Draft Florida Reef Tract Coral Disease Outbreak Coral surface microbial communities from Montastraea cavernosa, offshore reef, Ft. Lauderdale, FL, USA - McLGH -2 University of Florida 3300045497 Metagenome Analysis MEGAHIT v. 1.1.4 released per PI No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified coral surface 26.16 -80.1 200187695 306835 2 4 3 5 0.0 Metagenome 3300022168 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022168 Metagenome Analysis spades v. 3.11.1-check Yes Yes bcampb7@clemson.edu; chenf@umces.edu Barbara Campbell; Feng Chen Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.124826 -75.260873 84702130 212708 11 0 17 0 SRX3786003, SRX2745129, SRX3786002 Unrestricted 0.0 Metagenome 3300003592 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_10m_DNA DOE Joint Genome Institute (JGI) 3300003592 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 248277646 490669 299 3 519 7 Unrestricted 0.0 Metagenome 3300009077 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328 DOE Joint Genome Institute (JGI) 3300009077 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 699993029 1329128 546 104 884 183 SRX2999543 Unrestricted 0.0 Metagenome 3300011576 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00961 Weill Cornell Medical College 3300011576 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.91 24828358 37142 10 0 27 0 SRX822923 0.0 Metagenome 3300042641 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A34 University of California, Davis 3300042641 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 187219178 541572 268 4 519 2 0.0 Metagenome 3300040697 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Environmental Research Center, Mid-Atlantic, MD, USA - SERC_049-M-20170711-COMP-DNA1 Battelle Memorial Institute 3300040697 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89008 -76.56001 1128014 3311 18 3 30 6 0.0 Metagenome 3300034119 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166 DOE Joint Genome Institute (JGI) 3300034119 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1415069745 2905552 818 186 1250 315 SRX7622338 Unrestricted 10.5 Metagenome 3300002951 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-4-D DOE Joint Genome Institute (JGI) 3300002951 Metagenome Analysis Yes Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 72568484 169140 183 31 326 56 SRX2568352 Unrestricted 0.0 Metagenome 3300021562 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - E2014-0102-100LTR Downsampled Assembly University of Michigan 3300021562 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified freshwater lake 41.703267 -83.258317 8074469 13841 3 17 9 24 0.0 Metagenome 3300013856 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00575 Weill Cornell Medical College 3300013856 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.98 61708973 100965 32 0 47 1 SRX822542 0.0 Metagenome 3300006056 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 10/23/14 1A DNA DOE Joint Genome Institute (JGI) 3300006056 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ebyoung@uwm.edu Erica Young, Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 4521741403 10608299 2615 509 3963 894 SRX2748473 Unrestricted 0.0 Metagenome 3300066300 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONZ_005-M-20160714-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066300 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.10077 -96.56309 85035417 253524 158 7 284 8 0.0 Metagenome 3300059790 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.571 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059790 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 93109691 223455 145 56 234 79 SRX2753568 Unrestricted 0.0 Metagenome 3300037439 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVT2_Sep_14_v DOE Joint Genome Institute (JGI) 3300037439 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 3033443202 4852460 884 24 1426 39 SRX9163010 Unrestricted 17.0 Metagenome 3300009598 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Sandy's Spring West, USA to study Microbial Dark Matter (Phase II) - SSWsed_matched DOE Joint Genome Institute (JGI) 3300009598 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes brian.hedlund@unlv.edu; rstepanauskas@bigelow.org Brian Hedlund; Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring 40.653 -119.3749 7.03 214188096 553499 236 1 345 6 SRX2753869 Unrestricted 0.0 Metagenome 3300031893 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28 DOE Joint Genome Institute (JGI) 3300031893 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1346889824 3196409 437 1 707 5 SRX5820069 Unrestricted 12.71 Metagenome 3300014876 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200_16_10D DOE Joint Genome Institute (JGI) 3300014876 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9224 -106.9518 233268387 533863 277 12 600 44 SRX3780460 Unrestricted 4.57 Metagenome 3300023434 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1004 DOE Joint Genome Institute (JGI) 3300023434 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 165008949 333368 163 0 247 1 SRX4397245 Unrestricted 11.08 Metagenome 3300011395 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT200_2 DOE Joint Genome Institute (JGI) 3300011395 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8897 -106.9075 113004379 276152 219 17 451 36 SRX3368459 Unrestricted 0.0 Metagenome 7000000234 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 404239096 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000234 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 27876779 55490 0 0 0 0 0.0 Metagenome 3300038427 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P6_D10 DOE Joint Genome Institute (JGI) 3300038427 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 522816769 740225 182 5 266 2 SRX9472138 Unrestricted 33.22 Metagenome 3300028149 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_18SEP2017_LD1 DOE Joint Genome Institute (JGI) 3300028149 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 48729578 103664 72 55 94 83 SRX5345920 Unrestricted 18.51 Metagenome 3300002743 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK08-C DOE Joint Genome Institute (JGI) 3300002743 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.4 58456 167 14 3 15 5 SRX1991362 Unrestricted 0.0 Metagenome 3300025036 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG06_land_8/20/14_3.00 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025036 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 739920074 1279605 647 5 971 9 SRX3348126 Unrestricted 0.0 Metagenome 3300053092 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere DOE Joint Genome Institute (JGI) 3300053092 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.588172 -123.19295 971756197 1779945 411 86 652 144 Unrestricted 15.03 Metagenome 3300013285 *Microbiome Permanent Draft Freshwater microbial communities from high-altitude lakes in Yosemite National Park, California, USA Freshwater microbial communities from Lower Cathedral Lake, Yosemite National Park, California, USA - 13028-31Y DOE Joint Genome Institute (JGI) 3300013285 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jmbeman@gmail.com J Michael Beman No Environmental Aquatic Lake Freshwater Unclassified Freshwater 37.8453 -119.4233 321224729 613138 309 40 442 101 SRX3008132 Unrestricted 8.35 Metagenome 3300021407 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O DOE Joint Genome Institute (JGI) 3300021407 Metagenome Analysis spades v. 3.11.1-check Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 3210614817 6934165 919 130 1534 206 SRX4021888 Unrestricted 9.49 Metagenome 3300036881 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-2-X0 DOE Joint Genome Institute (JGI) 3300036881 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 484375950 769870 158 2 226 7 SRX8137290 Unrestricted 17.69 Metagenome 3300018063 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2 DOE Joint Genome Institute (JGI) 3300018063 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 1.27 1340325143 2700894 808 20 1351 29 SRX3939725 Unrestricted 5.97 Metagenome 3300043375 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 147-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043375 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9875 -107.0028 499520513 1341941 429 33 829 66 Unrestricted 6.77 Metagenome 3300047449 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_180117.NP2 DOE Joint Genome Institute (JGI) 3300047449 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 318082210 686831 290 90 509 150 Unrestricted 8.87 Metagenome 3300046052 *Microbiome Permanent Draft Halite microbial communities from Atacama Desert, Chile Halite microbial communities from Chanaral, Atacama Desert, Chile - CH1 Novogene 3300046052 Metagenome Analysis metaWRAP v. 1.3.2 No Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Halite Rock-dwelling (endoliths) Unclassified Halite -26.167 -70.302 162948246 191830 21 1 22 3 0.0 Metagenome 3300044569 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_USB_148 DOE Joint Genome Institute (JGI) 3300044569 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 119605276 184326 121 7 171 7 SRX12657082 Unrestricted 100.32 Metagenome 3300070998 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_003-M-20200709-COMP-DNA1 3300070998 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 20756669 64270 90 2 190 1 0.0 Metagenome 3300047571 *Microbiome Permanent Draft Floating fern leaf microbial communities from various locations Floating fern leaf microbial communities from Cundinamarca, Colombia - 1507_IRRI DOE Joint Genome Institute (JGI) 3300047571 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dave.armitage@gmail.com David Armitage No Host-associated Plants Phylloplane/Leaf Phyllosphere Endophytes Leaf 5.0088 -73.9653 51854066 58560 22 1 31 1 Unrestricted 476.67 Metagenome 3300070481 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_015-M-20190110-COMP-DNA1 Battelle Memorial Institute 3300070481 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 19.561039 -155.249535 4.95-5.72 1981316 6516 21 5 27 5 0.0 Metagenome 3300027313 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 45 (SPAdes) DOE Joint Genome Institute (JGI) 3300027313 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 206272783 481964 160 2 280 4 SRX4340969 Unrestricted 0.0 Metagenome 3300039891 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_004-M-20170626-COMP-DNA1 Battelle Memorial Institute 3300039891 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 23077077 60885 61 3 99 2 0.0 Metagenome 3300055520 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.2W.7 SIP fraction DOE Joint Genome Institute (JGI) 3300055520 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 208559438 384555 141 9 228 18 Unrestricted 14.45 Metagenome 3300027101 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF027 (SPAdes) DOE Joint Genome Institute (JGI) 3300027101 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 18759515 59436 35 8 62 15 SRX2014317 Unrestricted 0.0 Metagenome 3300009574 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day87 DOE Joint Genome Institute (JGI) 3300009574 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 39.849 -81.036 9402245 22811 51 0 128 0 SRX2996526 Unrestricted 0.0 Metagenome 3300043596 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 119-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043596 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9892 -107.0066 567900605 1497849 448 23 832 50 Unrestricted 7.92 Metagenome 3300005728 *Microbiome Permanent Draft Microbial assemblages from M. leidyi gut Spring M. leidyi Microbial Assemblages Auburn University 3300005728 Metagenome Analysis CLC Genomics Workbench 8.0.1 released per JGI data release policy No Yes mossant@auburn.edu Anthony Moss No Host-associated Invertebrates Unclassified Ctenophora Unclassified M. Leidyi gut -88.083318 30.234331 1410814 4978 0 7 0 7 0.0 Metagenome 3300015196 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G2C, Ice surface) University of Bristol 3300015196 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.163069 -50.018284 6.63 302935645 515326 116 13 172 29 0.0 Metagenome 3300006662 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T8 (2) BES Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006662 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 33796584 61937 42 0 74 0 0.0 Metagenome 3300006723 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 159227541 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006723 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 1619678 2257 1 0 1 0 0.0 Metagenome 3300003254 *Microbiome Permanent Draft Marine sponge Petrosia ficiformis associated microbial communities from Achziv, Israel Marine sponge Petrosia ficiformis associated microbial communities from Achziv, Israel - Sample 106 3300003254 Metagenome Analysis released by JGI data releasing policy No Yes burgsdorf84@gmail.com Ilia Burgsdorf No Host-associated Porifera Unclassified Unclassified Unclassified Marine sponge Petrosia ficiformis associated 33.01 35.04 58315382 65382 20 1 26 1 0.0 Metagenome 3300023065 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0899-MG DOE Joint Genome Institute (JGI) 3300023065 Metagenome Analysis spades v. 3.11.1 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 286543473 474719 202 5 238 7 SRX4370199 Unrestricted 26.71 Metagenome 2032320001 *Microbiome Permanent Draft PCE-dechlorinating microbial communities from Ithaca, New York, USA PCE-dechlorinating microbial communities from Ithaca, New York, USA - mixed culture (PCEOT) DOE Joint Genome Institute (JGI) 2032320001 Metagenome Analysis Newbler released based on JGI ITS No Yes rer26@cornell.edu Ruth Richardson No Engineered Bioremediation Tetrachloroethylene Tetrachloroethylene and derivatives Bioreactor PCE-dechlorinating 42.4405556 -76.4969444 83714625 195530 62 0 112 0 Unrestricted 0.0 Metagenome 3300007820 *Microbiome Permanent Draft Permafrost core soil microbial communities from Svalbard, Norway Permafrost core soil microbial communities from Svalbard, Norway - sample 2-12-2 Soapdenovo Princeton University 3300007820 Metagenome Analysis soapdenovo1.06 released per JGI data release policy Yes Yes xue.ethan@gmail.com yaxin xue No Environmental Terrestrial Unclassified Soil Permafrost soil 78.11096 15.55294 69803331 93713 12 3 19 2 0.0 Metagenome 3300028283 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_06_06_36m DOE Joint Genome Institute (JGI) 3300028283 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 431462390 852258 356 15 560 27 SRX5244771 Unrestricted 11.29 Metagenome 3300070888 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone National Park, Wyoming, USA - YELL_009-M-20190822-COMP-DNA1 Battelle Memorial Institute 3300070888 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 44.970313 -110.501884 5.82-6.16 11424890 36047 60 11 110 19 0.0 Metagenome 3300027836 *Microbiome Permanent Draft Freshwater and sediment microbial communities from a dead zone in Lake Erie, USA Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027836 Metagenome Analysis spades v. 3.11.1 Yes Yes rmmckay@bgsu.edu Robert M. McKay No Environmental Aquatic Lentic Freshwater Unclassified Freshwater and sediment 43.933506 -78.003845 1334768367 2661635 387 193 526 340 SRX1991827 Unrestricted 0.0 Metagenome 3300032096 *Microbiome Permanent Draft Microbial communities from the deep biosphere Fracture brine microbial communities fom Vermilion Range, Minnesota, USA - DDH944 re-assembly The Marine Biological Laboratory 3300032096 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Fracking water Deep subsurface Unclassified Fracture brine 47.82333 -92.23722 55396148 104173 36 3 70 10 SRX2058519 0.0 Metagenome 3300004274 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_120m DOE Joint Genome Institute (JGI) 3300004274 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 422656347 998713 379 12 704 23 Unrestricted 0.0 Metagenome 3300040266 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Barrow Environmental Observatory, Tundra, AK, USA - BARR_005-O-20170809-COMP-DNA1 Battelle Memorial Institute 3300040266 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 71.28241 -156.61936 7693881 21488 38 2 72 1 0.0 Metagenome 3300019377 *Microbiome Permanent Draft Populus soil microbial communities from riparian zone of different river systems in the western United States Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T DOE Joint Genome Institute (JGI) 3300019377 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jen.schweitzer@utk.edu Jennifer Schweitzer No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.0262 -109.5407 3353295871 8271031 2350 90 4116 190 SRX3901080 Unrestricted 5.82 Metagenome 3300036488 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T-25 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036488 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 61648834 120374 108 1 175 2 SRX4415301, SRX7705519 Unrestricted 0.0 Metagenome 3300017829 *Microbiome Permanent Draft Guam Dysideidae Sponge Holobiont Metagenomes Dysideidae sponge tissue microbial communities from Anae Island reef, Guam, USA - GUM202 GUM202_idba_042617 University of California, San Diego, Scripps Institute of Oceanography 3300017829 Metagenome Analysis IDBA-UD v 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton Yes 32576248 Host-associated Porifera Unclassified Sponge Unclassified sponge tissue 13.446391 144.682388 359887401 313004 14 3 13 6 0.0 Metagenome 3300049287 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MB12 DOE Joint Genome Institute (JGI) 3300049287 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 90693562 237452 210 5 476 8 Unrestricted 24.45 Metagenome 3300023018 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-233 DOE Joint Genome Institute (JGI) 3300023018 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Unclassified Plant litter Unclassified leaf litter 40.2198 -122.9842 58366655 110195 14 11 15 19 SRX4392067 Unrestricted 62.91 Metagenome 3300036991 *Microbiome Permanent Draft Soil microbial communities from a coastal freshwater wetland in North Carolina, United States Soil microbial communities from coastal freshwater wetland in North Carolina, United States - 16Pre DOE Joint Genome Institute (JGI) 3300036991 Metagenome Analysis metaspades v. 3.13.0 Yes Yes peraltaa@ecu.edu Ariane Peralta No Environmental Terrestrial Wetlands Soil Unclassified soil 35.8959 -76.1658 304780722 526650 156 3 248 3 SRX8387801 Unrestricted 13.28 Metagenome 3300017454 *Microbiome Permanent Draft Yellowstone National Park Obsidian Pool microbial communities Hotspring water microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA - Obsidian 7, mini-metaG sequencing Stanford University 3300017454 Metagenome Analysis SPAdes, metaSPAdes v10.0 and Megahit released by JGI data releasing policy No Yes berghuis@stanford.edu Bojk Berghuis No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified hot spring water 44.428 -110.5885 768928 852 0 0 0 0 0.0 Metagenome 3300041997 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 DOE Joint Genome Institute (JGI) 3300041997 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.8942 -103.685 556846843 1420725 659 67 1229 122 SRX14827031 Unrestricted 6.71 Metagenome 3300031627 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - AG5_33.1 DOE Joint Genome Institute (JGI) 3300031627 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified Marine 70.5467 -122.9077 1054661182 2295728 781 279 1106 513 SRX5797748 Unrestricted 15.53 Metagenome 3300005329 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG DOE Joint Genome Institute (JGI) 3300005329 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn rhizosphere 42.3948 -85.3738 5446028685 14316219 4154 249 6835 454 SRX2740417 Unrestricted 0.0 Metagenome 3300020382 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059) CEA Genoscope 3300020382 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -60.3606 -60.5096 888234285 2011786 299 157 467 293 0.0 Metagenome 3300007539 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG DOE Joint Genome Institute (JGI) 3300007539 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 38.9819 -76.3716 584438297 1325157 0 0 0 0 SRX2753470, SRX5209302 Unrestricted 0.0 Metagenome 3300057152 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2020-0090 DOE Joint Genome Institute (JGI) 3300057152 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.82726 -83.19041 339092149 688747 307 182 527 260 Unrestricted 16.48 Metagenome 7000000526 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 765560005 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000526 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 106752684 143254 0 0 0 0 0.0 Metagenome 3300049269 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA20 DOE Joint Genome Institute (JGI) 3300049269 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 239070294 610651 334 1 590 8 Unrestricted 7.08 Metagenome 3300047188 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2019 MH01_4cm DOE Joint Genome Institute (JGI) 3300047188 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.358 19.0418 94720397 156652 78 3 175 4 Restricted 27.77 Metagenome 3300066009 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Barrow Environmental Observatory, Tundra, AK, USA - BARR_002-O-20170808-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066009 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 71.28241 -156.61936 200132784 510939 174 11 384 20 0.0 Metagenome 3300015320 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_01AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015320 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 189049089 320220 13 116 19 204 SRX3923696 Unrestricted 7.37 Metagenome 3300001095 *Microbiome Draft Wastewater bioreactor microbial communities from Singapore and Univ of Illinois at Urbana, that are terephthalate-degrading Wastewater bioreactor microbial communities from Singapore -Terephthalate degrading community TA Biofilm DOE Joint Genome Institute (JGI) 3300001095 Metagenome Analysis released based on JGI ITS Yes Yes sgtringe@lbl.gov, twoyke@lbl.gov; sgtringe@lbl.gov Susannah Tringe, Tanja Woyke; Susannah Tringe Yes 20686509, 25615435 Engineered Bioremediation Wastewater Terephthalate Unclassified Wastewater bioreactor 1.29973 103.771791 217084359 377258 222 0 366 2 Unrestricted 0.0 Metagenome 3300017530 *Microbiome Permanent Draft Archaeal and Bacterial diversity and function in deep-sea hydrothermal influenced sediments Deep-sea sediment microbial communities from hydrothermal vent field in the North Atlantic Ocean - Rainbow vent Biocant 3300017530 Metagenome Analysis Spades released by JGI data releasing policy No Yes cerqueira.mt@gmail.com Teresa Cerqueira No Environmental Aquatic Hydrothermal vents Marine Sediment sediment 36.230908 -33.904467 3 574201846 1382338 319 3 586 8 0.0 Metagenome 3300069641 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik, Tundra, AK, USA - TOOL_043-O-20170719-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069641 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 68.66109 -149.37047 127355160 358491 141 9 270 18 0.0 Metagenome 3300029012 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 377_12M Beijing Genomics Institute (BGI) 3300029012 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 62718419 77376 58 0 80 0 ERX491111 0.0 Metagenome 3300055083 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_28-s55 day 210 DOE Joint Genome Institute (JGI) 3300055083 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1591835865 2292159 239 160 307 183 Unrestricted 34.58 Metagenome 3300001703 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A5-11 DOE Joint Genome Institute (JGI) 3300001703 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 436206 1580 38 1 52 1 SRX1990517 Unrestricted 0.0 Metagenome 3300012475 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.10.old.080610 DOE Joint Genome Institute (JGI) 3300012475 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 68979967 182705 177 17 365 36 SRX3527361 Unrestricted 0.0 Metagenome 3300061657 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0238 Microbiome Insights 3300061657 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 502306983 693278 131 5 165 4 0.0 Metagenome 3300027295 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepA_8d DOE Joint Genome Institute (JGI) 3300027295 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 182673241 317498 94 6 133 8 SRX5245287 Unrestricted 19.44 Metagenome 3300037204 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 711 P-3-M DOE Joint Genome Institute (JGI) 3300037204 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0473 1172142812 2298179 412 32 727 57 SRX8145677 Unrestricted 8.63 Metagenome 3300036862 *Microbiome Permanent Draft Soil microbial communities from fields in the western Corn Belt region, Nebraska, United States Soil microbial communities from fields in the western Corn Belt region, Nebraska, United States - Switchgrass plot 313, 120 kg/ha N, depth 2 DOE Joint Genome Institute (JGI) 3300036862 Metagenome Analysis metaspades v. 3.13.0 Yes Yes marty.schmer@ars.usda.gov Marty Schmer No Environmental Terrestrial Agricultural land Soil Unclassified soil 41.1681 -96.4109 2131814277 3484420 522 6 857 9 SRX8296448 Unrestricted 15.41 Metagenome 3300014063 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway plastic -P00709 Weill Cornell Medical College 3300014063 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Plastic surface city subway plastic 40.87 -73.91 11649742 14414 10 0 15 0 SRX822676 0.0 Metagenome 3300014751 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 572_12M Beijing Genomics Institute (BGI) 3300014751 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 80471241 100167 43 1 69 0 ERX491223 0.0 Metagenome 3300036570 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C3-9A DOE Joint Genome Institute (JGI) 3300036570 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 73974484 232028 204 8 341 6 SRX8817891 Unrestricted 4.43 Metagenome 3300014324 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D1 DOE Joint Genome Institute (JGI) 3300014324 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.000706 -121.624306 502229222 1232827 474 1 949 5 SRX7188163 Unrestricted 0.0 Metagenome 3300037343 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Unnamed Lake-15 #985 DOE Joint Genome Institute (JGI) 3300037343 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4588 78.1896 328219345 619278 218 66 328 121 SRX9378923 Unrestricted 33.94 Metagenome 3300070462 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_027-M-20190614-COMP-DNA1 3300070462 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 664154 2229 8 0 23 1 0.0 Metagenome 3300045016 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_105m_2014 DOE Joint Genome Institute (JGI) 3300045016 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 794141013 1385140 680 6 1165 1 Unrestricted 13.17 Metagenome 3300001334 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-65cm)- 6 month illumina University of Tennessee 3300001334 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 171380106 650827 347 8 602 23 0.0 Metagenome 3300046783 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 soil DOE Joint Genome Institute (JGI) 3300046783 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.588086 -123.192277 7.02 441423590 812855 263 18 461 37 Unrestricted 18.08 Metagenome 3300014943 *Microbiome Permanent Draft Human fecal microbial community of Hadza hunter-gatherer and regular subjects from Tanzania and Italy Human fecal microbial community of Hadza hunter-gatherer populations from Tanzania - 10027 University of Bologna 3300014943 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal -3.6347588 35.0828588 73917178 147357 61 0 137 0 0.0 Metagenome 3300027400 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300027400 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 31016923 102364 111 2 187 2 SRX1990520 Unrestricted 0.0 Metagenome 3300002517 *Microbiome Permanent Draft Pimephales promelas gut microbial communities from the University of Colorado, Denver, USA, during Triclosan exposure experiment Gut microbiomes of Pimephales promelas (fathead minnow) during Triclosan exposure experiment - D14S4- solvent control exposure day 14 3300002517 Metagenome Analysis idba_ud released by JGI data releasing policy No Yes christopher.s.miller@ucdenver.edu Christopher Miller, Christopher S. Miller No Host-associated Fish Intestine Digestive system Unclassified Pimephales promelas gut 39.7392 -104.9847 482714524 894670 7 4 10 3 0.0 Metagenome 7000000409 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human right retroauricular crease microbial communities from NIH, USA - visit 2, subject 763961826 replicate 1 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000409 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 11163515 22501 0 0 0 0 SRX024914 0.0 Metagenome 3300002831 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A1a-11 DOE Joint Genome Institute (JGI) 3300002831 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 178549 583 30 0 42 0 SRX1991128 Unrestricted 0.0 Metagenome 3300013936 *Microbiome Permanent Draft Baboon gut microbial communities from fecal samples in Kenya Baboon gut microbial communities from fecal samples in Kenya - F28 Duke University 3300013936 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Baboon gut 2.717 37.1 80021757 174525 82 3 168 6 SRX834661 0.0 Metagenome 3300043414 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Oksrukuyik Creek, North Slope Borough, Alaska, USA - oksrukuyikcreek_2019_sw_WHONDRS-S19S_0050 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043414 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 68.6272 -149.5972 320256118 588175 328 95 550 139 Unrestricted 20.07 Metagenome 3300009907 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY15 University of New South Wales 3300009907 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 45334153 71699 36 0 61 1 0.0 Metagenome 3300013771 *Microbiome Permanent Draft Activated sludge bacterial and viral communities from EBPR bioreactors in Australia Activated sludge bacterial and viral communities from EBPR bioreactors in Brisbane, Australia - M92206 California Institute of Technology 3300013771 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Activated sludge -27.485973 153.190699 725554142 1577593 319 7 549 10 SRX646154 0.0 Metagenome 3300048569 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - Maria340 DOE Joint Genome Institute (JGI) 3300048569 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Sand Soil Desert sand -78.0669 164.2928 369843874 696902 191 0 289 0 Unrestricted 0.0 Metagenome 3300009691 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP2 DOE Joint Genome Institute (JGI) 3300009691 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes rstepanauskas@bigelow.org; duane.moser@dri.edu Ramunas Stepanauskas; Duane Moser No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Thermal springs 36.96 -116.72 687720844 1438293 693 31 1350 34 SRX2948714 Unrestricted 0.0 Metagenome 3300007128 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159207311 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007128 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 63241809 96190 73 0 102 0 0.0 Metagenome 3300000883 *Microbiome Permanent Draft Freshwater and marine microbial communities from the Columbia River, USA, of estuaries and plumes across salinity gradients Estuary microbial communities from the Columbia River - 5 PSU University of Maryland 3300000883 Metagenome Analysis released per PI's request No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato Yes 26536246 Environmental Aquatic Intertidal zone Marine Estuary Freshwater and marine 46.235 -123.91 339832607 816259 44 15 94 33 0.0 Metagenome 7000000668 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 765094712 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000668 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 25869 46 0 0 0 0 SRX024977, SRX098557 0.0 Metagenome 3300040071 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Taiga, AK, USA - HEAL_005-O-20160804-COMP-DNA1 Battelle Memorial Institute 3300040071 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.87569 -149.21334 14471705 41018 52 7 105 9 0.0 Metagenome 3300054103 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_20_10 re-annotation DOE Joint Genome Institute (JGI) 3300054103 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 483372323 1066031 313 59 585 80 SRX3005975 0.0 Metagenome 3300042135 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_070716_127 DOE Joint Genome Institute (JGI) 3300042135 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.9457 -103.6985 131796495 351202 212 19 442 37 Unrestricted 7.57 Metagenome 3300026119 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_NADW_ad_2500m_LV_B (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026119 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 356938148 761753 390 17 568 29 SRX2779515 Unrestricted 0.0 Metagenome 3300012521 *Microbiome Permanent Draft Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 10_41_5_180_A2 metaG DOE Joint Genome Institute (JGI) 3300012521 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes Steve.Brown@lanzatech.com Steven Brown Yes 30202438 Engineered Bioreactor Anaerobic Semi-continuous Digestate Switchgrass degrading 43.726 -72.1429 344667885 554995 778 3 1135 7 SRX3290041 Unrestricted 0.0 Metagenome 3300005270 *Microbiome Draft Switchgrass adapted compost microbial communities from mini bioreactor at UC Davis Thermophilic enrichment culture from UC Davis - Sample SG0.5Z960 DOE Joint Genome Institute (JGI) 3300005270 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes jmgladden@lbl.gov, JMGladden@lbl.gov; SWSinger@lbl.gov John Gladden, John Gladden; Steven W. Singer No Engineered Solid waste Composting Grass Bioreactor Switchgrass adapted compost 38.5382364 -121.7639012 49589301 99612 70 1 106 0 Unrestricted 0.0 Metagenome 3300011465 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00738 Weill Cornell Medical College 3300011465 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.99 14649738 24203 14 0 23 0 SRX822705 0.0 Metagenome 3300028797 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04 DOE Joint Genome Institute (JGI) 3300028797 Metagenome Analysis spades v. 3.11.1 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -19.6574 146.8351 2488214290 5354609 2923 44 4765 68 SRX7093511, SRX7093512 Unrestricted 0.0 Metagenome 3300022453 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1BM3 JM72 AGRF 3300022453 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 47425152 86792 55 1 63 2 0.0 Metagenome 3300048587 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Sediment microbial communities from brackish wetlands in San Jose, California, USA - ROC3_2 DOE Joint Genome Institute (JGI) 3300048587 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Intertidal zone Marine Salt marsh sediment Sediment 37.427598 -121.938678 2028337802 3004879 593 110 872 147 Unrestricted 21.83 Metagenome 3300042548 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A13 University of California, Davis 3300042548 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 216587102 600431 300 4 519 9 0.0 Metagenome 3300049005 *Microbiome Permanent Draft Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA - CNF8ET1 DOE Joint Genome Institute (JGI) 3300049005 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sydneyg@ucr.edu Sydney Glassman No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 33.6681 -117.456 1604777476 2726282 614 99 958 132 Unrestricted 16.85 Metagenome 3300011418 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Florida, USA - TSFL038 MetaG DOE Joint Genome Institute (JGI) 3300011418 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 28.7104 -81.4844 343206849 652114 254 6 403 11 SRX3539470 Unrestricted 0.0 Metagenome 3300005345 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG DOE Joint Genome Institute (JGI) 3300005345 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 3667566309 10788493 3139 191 5173 353 SRX2740934 Unrestricted 0.0 Metagenome 3300015279 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_01AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015279 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 125906585 230588 15 34 12 50 SRX3923852 Unrestricted 10.64 Metagenome 3300025701 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025701 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 481856466 914713 404 123 546 183 SRX2569215 Unrestricted 0.0 Metagenome 3300049793 *Microbiome Permanent Draft Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA - 6_d_apr_JRB_CZO DOE Joint Genome Institute (JGI) 3300049793 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dawsonfairbanks@email.arizona.edu Dawson Fairbanks No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.88299428 -106.5342526 842552307 1389938 363 16 591 27 Unrestricted 14.0 Metagenome 3300055512 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.3C.10 SIP fraction DOE Joint Genome Institute (JGI) 3300055512 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 147725873 258757 177 10 287 19 Unrestricted 18.04 Metagenome 7000000615 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765620695 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000615 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 67901405 118180 0 0 0 0 0.0 Metagenome 3300029583 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35723 Beijing Genomics Institute (BGI) 3300029583 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 227838205 272579 186 0 227 0 0.0 Metagenome 3300056804 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.3W.9 SIP fraction DOE Joint Genome Institute (JGI) 3300056804 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 84051241 153068 85 1 178 5 Unrestricted 11.8 Metagenome 3300024283 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK11 DOE Joint Genome Institute (JGI) 3300024283 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 238911747 588422 283 30 501 47 SRX4547517 Unrestricted 8.34 Metagenome 3300010030 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Petempiche,Puerto Morelos, Mexico - Orbicella C C metagenome DOE Joint Genome Institute (JGI) 3300010030 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes momedinamunoz@gmail.com Medina Medina No Host-associated Invertebrates Coral Cnidaria Unclassified Coral 20.9047 -86.8366 776798354 1103429 62 2067 57 4534 SRX2525667 Unrestricted 0.0 Metagenome 3300002438 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP19-MB 3300002438 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300025077 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - 3B3 metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025077 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; wswingley@niu.edu Ramunas Stepanauskas; Wesley Swingley No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 41.6655 -87.5437 13-14 15368364 32530 23 1 44 5 SRX3296574 Unrestricted 1801.66 Metagenome 3300033048 *Microbiome Permanent Draft Characterization of microbial community from North Pond CORK fluids Aquifer fluid microbial communities from North Pond CORKs, Mid-Atlantic Ridge, Atlantic Ocean - Hole 1383C Shallow Marine Biological Laboratory 3300033048 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Aquatic Oceanic Marine Oceanic crust Aquifer fluid 22.8 -46.05 217818661 333430 173 3 247 5 0.0 Metagenome 3300053167 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S29_C_D45 hydrophobic DOE Joint Genome Institute (JGI) 3300053167 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 293112327 446036 162 11 180 12 Restricted 0.0 Metagenome 3300014511 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 78_B Beijing Genomics Institute (BGI) 3300014511 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 21665617 26662 14 0 23 0 ERX491307 0.0 Metagenome 3300002757 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE17-A DOE Joint Genome Institute (JGI) 3300002757 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.32 3741466 7798 28 7 52 9 SRX1991442 Unrestricted 0.0 Metagenome 3300008493 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763901136 replicate 2 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008493 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 176086658 258884 137 0 190 0 0.0 Metagenome 3300007812 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15 DOE Joint Genome Institute (JGI) 3300007812 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jim.fredrickson@pnnl.gov, jim.fredrickson@pnnl.gov; binskeep@montana.edu Jim Fredrickson, Jim Fredrickson; William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.7315 -110.7113 3 62646878 173807 23 0 28 0 SRX2753788 Unrestricted 0.0 Metagenome 3300001827 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM21, ROCA_DNA110_2.0um_23k 3300001827 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River plume Marine Plankton Marine plankton 10.6822 -54.4213 37344417 84341 13 27 50 58 0.0 Metagenome 3300008274 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764042746 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008274 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 61518432 88357 41 0 75 0 0.0 Metagenome 3300059600 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-064-2021 DOE Joint Genome Institute (JGI) 3300059600 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes viola.krukenberg@montana.edu Viola Krukenberg No Environmental Aquatic Sediment Thermal springs Unclassified Hot spring sediment 44.57028 -110.80531 692530913 684211 276 0 282 0 Unrestricted 17.75 Metagenome 3300025598 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug07 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025598 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 317755509 638818 153 58 241 161 SRX2518391 Unrestricted 0.0 Metagenome 3300006807 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_10_18 DOE Joint Genome Institute (JGI) 3300006807 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 39979368 79085 568 1 1054 1 SRX2924398 Unrestricted 0.0 Metagenome 3300045788 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_3_C DOE Joint Genome Institute (JGI) 3300045788 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 162471507 202705 114 1 121 1 Unrestricted 154.18 Metagenome 3300011811 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01131 Weill Cornell Medical College 3300011811 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -73.95 34300892 44055 11 0 17 0 SRX823086 0.0 Metagenome 3300015312 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_01AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015312 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 175800154 302884 23 116 31 208 SRX3923695 Unrestricted 7.44 Metagenome 3300030354 *Microbiome Permanent Draft Activated sludge microbial communities from nutrient removal reactor in Madison, Wisconsin, USA Activated sludge microbial communities from nutrient removal reactor in Madison, Wisconsin, USA - LS-SBR_LowDO_D100 University of Wisconsin 3300030354 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes Yes 30944872 Engineered Wastewater Unclassified Nutrient removal Unclassified Activated sludge 43.07 -89.4 42478583 70581 37 1 59 2 0.0 Metagenome 3300039042 *Microbiome Draft Cave microbial communities from Monte Cristo cave, Diamantina, Brazil Cave microbial communities from Monte Cristo cave, Diamantina, Brazil - P3 The Keck Facility at the Josephine Bay Paul Center 3300039042 Metagenome Analysis megahit v. 1.2.2 released by JGI data releasing policy No Yes amandagbendia@gmail.com Amanda Bendia No Environmental Terrestrial Unclassified Cave Unclassified Cave wall -18.29644 -43.55931 19140595 24200 5 0 4 1 0.0 Metagenome 3300029020 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 42_12M Beijing Genomics Institute (BGI) 3300029020 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 94450628 115200 76 0 97 0 ERX491139 0.0 Metagenome 3300011537 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100708 University of Pennsylvania 3300011537 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 15407198 33860 31 4 54 9 SRX756142 0.0 Metagenome 3300042879 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Aug2001-rr0261 DOE Joint Genome Institute (JGI) 3300042879 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1089059822 1691337 379 24 477 40 Unrestricted 18.11 Metagenome 3300020361 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000071 (ERX556078-ERR599167) CEA Genoscope 3300020361 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 18.9918 64.5757 468985021 1080458 318 1 572 2 0.0 Metagenome 3300013007 *Microbiome Permanent Draft Symbiotic microbial communities associated with the hydrothermal yeti crab kiwa sp. n. from the East Pacific Rise in the East Pacific Ocean Symbiotic microbial communities associated with the hydrothermal yeti crab kiwa sp. n. from the East Pacific Rise in the East Pacific Ocean - crab 1, guts Majorbio Bio-pharm Technology Co., Ltd. 3300013007 Metagenome Analysis SOAPdenovo released by JGI data releasing policy No Yes jxyao@pku.edu.cn jx yao No Host-associated Arthropoda: Crustaceans Gut Digestive system Unclassified yeti crab guts 1.2305 -101.4816 38462694 61479 10 1 18 3 0.0 Metagenome 3300009036 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG DOE Joint Genome Institute (JGI) 3300009036 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 937889633 1746829 1959 51 3421 63 SRX3203331 Unrestricted 0.0 Metagenome 3300012314 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100534 University of Pennsylvania 3300012314 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 22238462 26918 31 1 43 0 SRX756220 0.0 Metagenome 3300003164 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Maryland, USA - DAQMD-001 DOE Joint Genome Institute (JGI) 3300003164 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 10987609 26217 16 5 26 14 SRX2770402 Unrestricted 0.0 Metagenome 3300027642 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SD (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300027642 Metagenome Analysis spades v. 3.11.1 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 462308522 902201 191 63 277 90 Unrestricted 0.0 Metagenome 3300000993 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN606 DOE Joint Genome Institute (JGI) 3300000993 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 1040136 3592 25 0 24 0 SRX3311857 Unrestricted 0.0 Metagenome 3300002106 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4-10 DOE Joint Genome Institute (JGI) 3300002106 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 347685 1281 11 0 17 0 SRX1990513 Unrestricted 0.0 Metagenome 3300043730 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - FT_A60 DOE Joint Genome Institute (JGI) 3300043730 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.14 -62.9002 666906027 1828838 358 5 743 18 Unrestricted 8.93 Metagenome 3300040156 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA Corn field soil microbial communities from Boone County, Iowa, USA - CC43-WS-July2012 Iowa State University 3300040156 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land Corn field soil 42.01375 -93.783837 9197376 32513 40 0 72 1 0.0 Metagenome 3300021178 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M DOE Joint Genome Institute (JGI) 3300021178 Metagenome Analysis spades v. 3.10.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 2734902974 5809123 781 55 1320 89 SRX4029934 Unrestricted 14.85 Metagenome 3300000152 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P12 500m DOE Joint Genome Institute (JGI) 3300000152 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 48.97 -130.666667 132703477 308853 119 17 238 27 Unrestricted 0.0 Metagenome 3300020190 *Microbiome Permanent Draft Freshwater microbial communities from Lake Tanganyika, Tanzania Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015013 Mahale N5 surface DOE Joint Genome Institute (JGI) 3300020190 Metagenome Analysis spades v. 3.10.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater lake -6.0012 29.8102 1226423091 2044468 366 72 527 97 SRX4818209 Unrestricted 50.43 Metagenome 3300004024 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2 DOE Joint Genome Institute (JGI) 3300004024 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.045666 -121.866516 807956169 2408094 799 1 1672 15 SRX7142148 Unrestricted 0.0 Metagenome 3300045104 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_7_A DOE Joint Genome Institute (JGI) 3300045104 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 196461698 231819 113 1 131 1 Unrestricted 78.06 Metagenome 3300012566 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100768 University of Pennsylvania 3300012566 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12445514 27428 15 7 41 8 SRX756060 0.0 Metagenome 3300046528 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere DOE Joint Genome Institute (JGI) 3300046528 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.588 -123.194 585592513 996586 283 20 450 38 Unrestricted 17.72 Metagenome 3300006470 *Microbiome Permanent Draft Microbial communities from manure storage tank from Sherbrooke, QC, Canada Microbial communities from pig manure storage tank from Sherbrooke, QC, Canada, enriched culture C7 Agriculture and Agri-Food Canada 3300006470 Metagenome Analysis Trinity released per JGI data release policy No Yes jennifer.town@agr.gc.ca, Jennifer.town@agr.gc.ca Jennifer Town No Engineered Solid waste Unclassified Animal waste Unclassified Manure 45.4 -71.9 26724966 47499 30 4 54 6 0.0 Metagenome 3300069548 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Ozarks Complex, AL, USA - LENO_004-M-20160830-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069548 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.85388 -88.16122 31882682 98441 97 3 168 4 0.0 Metagenome 3300024991 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_500_plan (SPAdes) DOE Joint Genome Institute (JGI) 3300024991 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919, 28386012 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 412698899 554457 126 16 137 22 SRX2705195, SRX2705194 Unrestricted 0.0 Metagenome 3300049032 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - B14_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049032 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 284182740 633412 301 17 586 25 Unrestricted 0.0 Metagenome 3300035306 *Microbiome Permanent Draft Wastewater microbial community from ANAMMOX bioreactor in Ghent University, Belgium Wastewater microbial community from ANAMMOX bioreactor in Ghent University, Belgium - Thermophilic-1 reassembly Baseclear 3300035306 Metagenome Analysis IDBA-UD v. 1.1.3 released by JGI data releasing policy No Yes josemaria.carvajalarroyo@ugent.be Jose Maria Carvajal Arroyo No Engineered Bioreactor Sludge Anaerobic Unclassified Wastewater 51.054 3.71 7.6 144187899 200268 120 1 172 2 0.0 Metagenome 7000000744 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764083206 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000744 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 27836337 57410 0 0 0 0 0.0 Metagenome 3300044808 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_18BS DOE Joint Genome Institute (JGI) 3300044808 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4242 -106.2374 1000753847 1581697 358 7 584 9 SRX20649973 Unrestricted 14.43 Metagenome 3300000281 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM227 Beijing Genomics Institute (BGI), Macrogen 3300000281 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 57917107 85563 196 0 279 0 0.0 Metagenome 3300050820 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water viral communities from Sandhills, Nebraska, United States - NSL_Smith_2017_V DOE Joint Genome Institute (JGI) 3300050820 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.78581 -102.52354 649896839 1444926 306 19 513 27 Unrestricted 41.44 Metagenome 3300028125 *Microbiome Permanent Draft Extreme environments viral communities from various locations Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SB DOE Joint Genome Institute (JGI) 3300028125 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Coastal Marine Brine sea-ice brine 71.3731 -156.5049 153712978 403098 4 3 12 3 SRX5248025 Unrestricted 62.23 Metagenome 3300039368 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 238_M Beijing Genomics Institute (BGI) 3300039368 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 89932708 133495 83 2 161 3 ERX491014 0.0 Metagenome 3300029728 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37282 Beijing Genomics Institute (BGI) 3300029728 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 163501334 199561 120 0 157 0 0.0 Metagenome 3300030085 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_036 - TARA_R100000030 CEA Genoscope 3300030085 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 20.8222 63.5133 167082048 332675 1 1 1 2 0.0 Metagenome 3300027956 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027956 Metagenome Analysis spades v. 3.11.1 Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0956 -99.1001 464773605 1150309 570 23 1116 36 SRX2753780 Unrestricted 0.0 Metagenome 3300043038 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Shale gas microbial communities from Fort St. John, British Columbia, Canada - PROGRESS HHA (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043038 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back shale gas 57.0 -123.0 11078050 14629 15 0 13 0 SRX8356927 Unrestricted 996.48 Metagenome 3300022572 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 4 Selected contigs with viral hallmark genes Autonomous University of Barcelona 3300022572 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 1359060 1870 0 0 0 0 0.0 Metagenome 3300039315 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 385_4M Beijing Genomics Institute (BGI) 3300039315 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 12980580 15292 9 1 17 0 ERX491122 0.0 Metagenome 3300022860 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1450 DOE Joint Genome Institute (JGI) 3300022860 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 181977179 372929 195 4 285 8 SRX4397507 Unrestricted 11.54 Metagenome 3300060665 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Lower Teakettle, Sierra National Forest, California, USA - TEAK_002-O-20210720-comp-1 DOE Joint Genome Institute (JGI) 3300060665 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 36.978454 -119.035693 958813025 1632731 469 98 767 140 Unrestricted 14.79 Metagenome 3300025574 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample F53-3 shallow (SPAdes) DOE Joint Genome Institute (JGI) 3300025574 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 284630148 584099 190 23 334 38 SRX1987724 Unrestricted 0.0 Metagenome 2020627001 *Microbiome Permanent Draft Wastewater viral communities from wastewater treatment facility in Singapore Viral communities in wastewater treatment process (AS) University of Illinois, Urbana-Champaign 2020627001 Metagenome Analysis Newbler assembly was used released per JGI data release policy No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Activated sludge Wastewater 1.332 103.756 23476721 58579 2 0 8 0 0.0 Metagenome 3300028862 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N3_1 DOE Joint Genome Institute (JGI) 3300028862 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 678819306 1250294 470 73 663 120 SRX5357461 Unrestricted 0.0 Metagenome 7000000582 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 764669880 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000582 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 80475758 118463 0 0 0 0 0.0 Metagenome 3300000330 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM175 Beijing Genomics Institute (BGI), Macrogen 3300000330 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 57740212 76156 211 0 346 0 0.0 Metagenome 2149837021 *Microbiome Permanent Draft Human fecal microbial communities from the University of Arizona, for HMP training Human fecal microbial communities from the University of Arizona (HMP) - UAf1 Chinese National Human Genome Center, Beijing 2149837021 Metagenome Analysis released per JGI data release policy No Yes mbsulli@email.arizona.edu, mbsulli@gmail.com Matthew Sullivan No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 32.23 -110.95 79971437 100629 321 0 445 0 0.0 Metagenome 3300001693 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A2-12 DOE Joint Genome Institute (JGI) 3300001693 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 771318 2837 24 4 44 6 SRX1990518 Unrestricted 0.0 Metagenome 3300020326 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100002003 (ERX556099-ERR599004) CEA Genoscope 3300020326 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 6.3929 -103.0691 279670052 630592 215 16 413 33 0.0 Metagenome 3300028570 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant12 DOE Joint Genome Institute (JGI) 3300028570 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1150727 -123.147 848016136 1444333 776 13 1173 24 SRX5248324 Unrestricted 37.05 Metagenome 3300038593 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from Daisy Lake, Ontario, Canada Freshwater lake sediment microbial communities from Daisy Lake, Ontario, Canada - B35 University of Cambridge 3300038593 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 46.27199 -80.52479 7409578 20814 19 1 28 0 0.0 Metagenome 3300010339 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3 DOE Joint Genome Institute (JGI) 3300010339 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Wetlands Soil Unclassified Bog forest soil 51.62 -128.09 1514286980 2954274 870 35 1410 51 SRX2521906 Unrestricted 0.0 Metagenome 3300048084 *Microbiome Permanent Draft Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA - 3_d_sep_JRB_CZO DOE Joint Genome Institute (JGI) 3300048084 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dawsonfairbanks@email.arizona.edu Dawson Fairbanks No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.882743 -105.537439 1055961799 1822111 337 8 565 12 Unrestricted 14.78 Metagenome 3300071000 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_004-M-20170625-COMP-DNA2 3300071000 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 53139518 154127 167 12 300 12 0.0 Metagenome 3300002014 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot15-1 3300002014 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 9161747 52013 162 9 299 14 0.0 Metagenome 3300011213 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00214 Weill Cornell Medical College 3300011213 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.98 40447689 52006 17 0 24 0 SRX822193 0.0 Metagenome 3300036797 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in New South Wales, Australia - Pf_7 DOE Joint Genome Institute (JGI) 3300036797 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil -34.5 150.0 1454457055 2397293 391 50 687 80 SRX8385159 Unrestricted 14.61 Metagenome 3300041791 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - A_31_wk_3 DOE Joint Genome Institute (JGI) 3300041791 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9659 -106.983 115026506 328789 234 8 397 9 SRX14808261 Unrestricted 10.41 Metagenome 3300021581 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from harmful algae blooms in Lake Erie, Western Basin, USA - E2014-0034-100-LTR University of Michigan 3300021581 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Algal bloom Freshwater 41.764333 -83.3323 8.375 92866094 173802 32 18 45 53 0.0 Metagenome 3300013123 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo - kab_022012_11m DOE Joint Genome Institute (JGI) 3300013123 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -1.64 29.05 1103775151 1972727 1019 19 1611 44 SRX7699272 Unrestricted 32.74 Metagenome 3300047333 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Frasne, France - Sphagnum fallax 6OTC_SF_FR DOE Joint Genome Institute (JGI) 3300047333 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 1430143624 2751088 652 144 1055 220 SRX14787457 Unrestricted 7.65 Metagenome 3300070507 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_003-M-20180219-COMP-DNA1 Battelle Memorial Institute 3300070507 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 37.116632 -119.730379 6-6.73 49739527 155244 256 24 470 45 0.0 Metagenome 3300047678 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Western Region, Iceland - Sphagnum teres C2_TE_ICE DOE Joint Genome Institute (JGI) 3300047678 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 2486481022 3420451 716 107 991 174 SRX14752731 Unrestricted 16.37 Metagenome 3300039769 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA Prairie soil microbial communities from Boone County, Iowa, USA - P24-LM-July2012 Iowa State University 3300039769 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land Prairie soil 42.01375 -93.783837 40828397 138116 113 13 256 23 0.0 Metagenome 3300050485 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - W1NW0 DOE Joint Genome Institute (JGI) 3300050485 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 237331039 427301 276 59 493 75 Unrestricted 18.68 Metagenome 3300029329 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 009_6_30_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029329 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 193604492 221223 148 0 205 1 0.0 Metagenome 3300031132 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLF.R1 DOE Joint Genome Institute (JGI) 3300031132 Metagenome Analysis spades v. 3.12.0 Yes Yes icelab@berkeley.edu Steven Lindow No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 37.8864 -122.2981 1239593072 2160388 642 66 654 79 SRX5656670 Unrestricted 35.0 Metagenome 3300018876 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011513CT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300018876 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1541302889 3408937 1119 118 2210 248 SRX4071582 Unrestricted 18.77 Metagenome 3300027877 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027877 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 29146959 Environmental Aquatic Wetlands Freshwater Sediment Wetland 41.2239 -82.3039 1390219742 3400244 1024 16 1943 28 SRX2761076 Unrestricted 0.0 Metagenome 3300045523 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_2_C DOE Joint Genome Institute (JGI) 3300045523 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 159281518 195608 104 1 111 1 Unrestricted 140.11 Metagenome 3300027768 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027768 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 51.62 -128.09 651274353 1653725 496 151 964 252 SRX2575203 Unrestricted 0.0 Metagenome 3300055017 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_130724.NP2 DOE Joint Genome Institute (JGI) 3300055017 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 1130698688 2431287 532 88 814 129 Restricted 0.0 Metagenome 3300037328 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Unnamed Lake-7 #421 DOE Joint Genome Institute (JGI) 3300037328 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.467 78.2821 292884121 566924 144 58 202 98 SRX9174158 Unrestricted 24.64 Metagenome 3300001938 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Bedford Basin, Nova Scotia, Canada - GS005 J. Craig Venter Institute (JCVI) 3300001938 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine 44.690277 -63.637222 37780382 64231 24 0 52 0 0.0 Metagenome 3300044941 *Microbiome Permanent Draft Microbial mat bacterial communities from hot springs in Waikite Valley, Taupo Volcanic Zone, New Zealand Microbial mat bacterial communities from hot spring in Waikite Valley, New Zealand - LMW_ETR_NZ_2018_Waikite_4_2 DOE Joint Genome Institute (JGI) 3300044941 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes LMWARD@post.harvard.edu Lewis Ward No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats microbial mat -38.3276 176.3016 642275758 851893 292 31 366 40 Unrestricted 41.44 Metagenome 3300038851 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample18 King Abdulaziz City for Science and Technology (KACST) 3300038851 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 20.31 38.46 13416228 38198 20 0 49 0 SRX1097584 0.0 Metagenome 3300014208 *Microbiome Permanent Draft Leachate and groundwater microbial communities from a municipal landfill and adjacent aquifer in Southern Ontario, Canada Groundwater microbial communities from an aquifer near a municipal landfill in Southern Ontario, Canada - Groundwater well OW334 metaG DOE Joint Genome Institute (JGI) 3300014208 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes laura.hug@uwaterloo.ca Laura Hug No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 43.442 -80.577 1835938605 3307093 2569 15 4324 25 SRX3574179 Unrestricted 11.73 Metagenome 3300028864 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N3_1 DOE Joint Genome Institute (JGI) 3300028864 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 835354612 1674461 627 123 901 177 SRX5799339 Unrestricted 0.0 Metagenome 3300035538 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B2.4_Sample2.Rodeo4.Well665 DOE Joint Genome Institute (JGI) 3300035538 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 125139301 206251 117 0 176 0 SRX8351247 Unrestricted 78.0 Metagenome 3300043773 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2010-rr0311 DOE Joint Genome Institute (JGI) 3300043773 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1001223819 1515195 406 47 540 60 Unrestricted 17.5 Metagenome 7000000584 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 246515023 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000584 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 201559186 389276 0 0 0 0 0.0 Metagenome 2222084011 *Microbiome Permanent Draft Coastal lagoon microbial communities from Mar Menor and Albufera, Spain Coastal lagoon microbial communities from Albufera, Spain - Sample 1 University Miguel Hernandez 2222084011 Metagenome Analysis released per JGI data release policy No Yes cmellahernandez@gmail.com Claudia Mella Yes 22778901 Environmental Aquatic Wetlands Freshwater Unclassified Coastal lagoon 39.330917 -0.343 15586720 33275 26 0 28 0 0.0 Metagenome 3300048082 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Woodchip biofilm microbial communities from field WBR in Freeville, NY, USA - field_wbr_p1 DOE Joint Genome Institute (JGI) 3300048082 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.516658 -76.333335 623190822 1492795 569 19 914 46 Unrestricted 7.83 Metagenome 3300035145 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Wetland water microbial microbial communities from coastal wetland in Texas, United States - D0608WATER DOE Joint Genome Institute (JGI) 3300035145 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Unclassified seawater 27.8973 -97.0409 827930501 1765035 473 107 791 199 SRX8263235 Unrestricted 11.79 Metagenome 3300027715 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Enriched soil microbial communities from Old Woman Creek wetland in Ohio, USA - Methanogen_OWC (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027715 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified Enriched soil 40.178 -81.073 529749298 1268237 579 7 1102 7 SRX2925912 Unrestricted 0.0 Metagenome 3300014928 *Microbiome Permanent Draft Human fecal microbial community of Hadza hunter-gatherer and regular subjects from Tanzania and Italy Human fecal microbial community of Hadza hunter-gatherer populations from Tanzania - 10007 University of Bologna 3300014928 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal -3.6347588 35.0828588 44531531 91892 41 0 71 6 0.0 Metagenome 3300044753 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 389-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044753 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9915 -107.0624 383420260 1083141 425 15 701 34 Unrestricted 6.75 Metagenome 3300049213 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Sediment-water slurry microbial communities from hot spring in Yellowstone National Park, WY, USA - Buffalo_pool_hpg_inc_3 DOE Joint Genome Institute (JGI) 3300049213 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Sediment-water slurry 44.5324 -110.7974 188723422 299720 87 1 135 0 Restricted 397.36 Metagenome 3300002012 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot15-3 3300002012 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 7344106 42376 116 9 241 13 0.0 Metagenome 3300003416 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Maryland, USA - DAQMD-015 DOE Joint Genome Institute (JGI) 3300003416 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 10367516 24691 25 10 28 15 SRX2770403 Unrestricted 0.0 Metagenome 3300006238 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 338793263 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006238 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 8596048 13859 9 0 15 3 0.0 Metagenome 3300007143 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila putrida female 3 gut Cornell University 3300007143 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy Yes Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila putrida female adult gut 43.025606 -77.572811 133103001 314895 124 7 206 14 0.0 Metagenome 3300031134 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLB.R2 DOE Joint Genome Institute (JGI) 3300031134 Metagenome Analysis spades v. 3.12.0 Yes Yes icelab@berkeley.edu Steven Lindow No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 37.8864 -122.2981 1146060825 2118742 692 37 885 49 SRX5656669 Unrestricted 37.92 Metagenome 2025206004 *Microbiome Permanent Draft Hot springs sediment microbial communities from the Great Boiling Springs, Nevada, USA Sample 300 2025206004 Metagenome Analysis released per JGI data releasing policy No Yes mhess@ucdavis.edu Matthias Hess No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot springs sediment 40.652 -119.372 6.5 456216751 897526 204 0 309 0 0.0 Metagenome 3300028217 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS377 with 0.1UM filter - spades JGI facility at Oak Ridge National Laboratory 3300028217 Metagenome Analysis Spades v. 3.11.1 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 22098194 45621 15 2 15 2 0.0 Metagenome 3300025258 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025258 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.9082 -79.0499 212076297 335534 96 4 102 6 SRX1991084 Unrestricted 0.0 Metagenome 3300042523 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jun2009-rr0663 DOE Joint Genome Institute (JGI) 3300042523 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 789521578 1250001 266 58 414 73 Unrestricted 23.1 Metagenome 3300045102 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_7_E DOE Joint Genome Institute (JGI) 3300045102 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 183953898 241502 107 1 124 2 Unrestricted 92.74 Metagenome 3300018019 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150 DOE Joint Genome Institute (JGI) 3300018019 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 832639360 1594125 457 5 746 15 SRX3960159 Unrestricted 14.59 Metagenome 3300038737 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample27 King Abdulaziz City for Science and Technology (KACST) 3300038737 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 22.2 37.55 40465807 91796 49 0 70 0 SRX1097594 0.0 Metagenome 3300006325 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0500m University of Hawaii 3300006325 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Aphotic zone Marine 22.75 -158.0 268161047 725633 455 23 720 55 0.0 Metagenome 3300000154 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 150m DOE Joint Genome Institute (JGI) 3300000154 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 182683324 340484 136 1 231 0 Unrestricted 0.0 Metagenome 3300026253 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026253 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 760088498 1422572 475 40 720 64 SRX3194965 Unrestricted 0.0 Metagenome 3300004022 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1 DOE Joint Genome Institute (JGI) 3300004022 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.045666 -121.866516 716244860 2186188 784 11 1669 20 SRX7142150 Unrestricted 0.0 Metagenome 3300008010 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-21 DOE Joint Genome Institute (JGI) 3300008010 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 534243135 952525 972 24 1516 25 SRX3198637 Unrestricted 0.0 Metagenome 3300035417 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Eunicella verrucosa from Algarve, Portugal - EV02H Euk Molecular Research LP (MR DNA) 3300035417 Metagenome Analysis Metawrap workflow v. 1.0.5 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 1885318 1892 1 1 0 1 0.0 Metagenome 3300069389 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone Northern Range (Frog Rock), Northern Rockies, WY, USA - YELL_046-M-20180712-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069389 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 44.95348 -110.53914 2800504 9228 44 5 85 7 0.0 Metagenome 3300013502 *Microbiome Permanent Draft Activated sludge bacterial and viral communities from EBPR bioreactors in Australia Activated sludge bacterial and viral communities from EBPR bioreactors in Brisbane, Australia - M81612 California Institute of Technology 3300013502 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Activated sludge -27.485973 153.190699 549390550 1138314 309 20 559 38 SRX646153 0.0 Metagenome 7000000742 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763901136 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000742 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 102666880 195986 0 0 0 0 0.0 Metagenome 7000000360 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159915365 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000360 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 16795559 28297 0 0 0 0 0.0 Metagenome 3300038458 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-1-M (v2) (version 2) DOE Joint Genome Institute (JGI) 3300038458 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0468 1052035779 2278388 569 8 1077 18 SRX8137854, SRX8137855 Unrestricted 0.0 Metagenome 3300032306 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 17-065 Genome Quebec 3300032306 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 47.702298 -68.588895 524672461 1092105 331 133 529 253 0.0 Metagenome 3300044513 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Estuarine water microbial communities from San Francisco Bay, California, United States - Jul19_FB_9_27D DOE Joint Genome Institute (JGI) 3300044513 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 37.6183 -122.2916 484169882 802540 149 38 208 52 Unrestricted 72.65 Metagenome 3300049034 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - E17_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049034 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 322932464 744686 342 7 674 14 Unrestricted 0.0 Metagenome 3300027555 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine sediment microbial community from Union City, CA, USA - Pond 2C Sediment 2 (SPAdes) DOE Joint Genome Institute (JGI) 3300027555 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Intertidal zone Marine Salt pond sediment Enviromental 37.569017 -122.102433 300195301 647355 341 4 584 10 SRX3304875 Unrestricted 0.0 Metagenome 3300043639 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 191-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043639 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.8571 -107.0968 693694249 1834548 485 18 884 33 Unrestricted 6.44 Metagenome 3300043166 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_4000m_C2_0cm5cm (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043166 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.1948 -122.0383 417071564 711903 181 6 335 7 SRX9141699 Unrestricted 69.37 Metagenome 3300069367 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Woodworth, Northern Plains, ND, USA - WOOD_003-M-20140925-COMP-DNA1 re-annotation Argonne National Laboratory 3300069367 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12823 -99.24136 2954275 8693 26 3 55 3 ERX2134005 0.0 Metagenome 3300021953 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R07 DOE Joint Genome Institute (JGI) 3300021953 Metagenome Analysis spades v. 3.11.1-check Yes Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified exposed rock -19.28 -43.5919 600187144 1635631 657 22 1155 34 SRX4020650 Unrestricted 7.8 Metagenome 3300012657 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100657 University of Pennsylvania 3300012657 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 36521230 81409 34 0 48 1 SRX756437 0.0 Metagenome 3300064821 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 681 in Dapp, Alberta, Canada - S00JY_0110 Microbiome Insights 3300064821 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 54.22361285 -113.5355333 148616254 217036 75 1 132 2 0.0 Metagenome 3300027387 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1562A-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027387 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2105 -123.7516 249329761 529688 173 7 261 13 SRX2753758 Unrestricted 0.0 Metagenome 3300060386 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210607_11_13 DOE Joint Genome Institute (JGI) 3300060386 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 883039114 1290003 345 261 452 335 Unrestricted 26.56 Metagenome 3300042080 *Microbiome Permanent Draft Deep-sea coral associated microbial communities from Gulf of Mexico, USA Deep-sea coral microbial communities from Gulf of Mexico, USA - 17365 AT357 M13-new Ecosystem Impacts of Oil and Gas Inputs to the Gulf Consortium, The Pennsylvania State University 3300042080 Metagenome Analysis Custom JGI assembly. Yes Yes No Host-associated Invertebrates Coral Cnidaria Unclassified Deep-sea coral 27.587 -89.705 787486774 893397 4 36 10 149 SRX6911448, SRX6913170 0.0 Metagenome 3300007031 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T18 (2) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300007031 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 50574477 101323 60 0 113 0 0.0 Metagenome 3300050157 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D10_RHK2_4_to_SEK_2 DOE Joint Genome Institute (JGI) 3300050157 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.245 737759595 1186112 343 130 544 203 Unrestricted 17.4 Metagenome 3300037235 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_10 DOE Joint Genome Institute (JGI) 3300037235 Metagenome Analysis metaspades v. 3.13.0 Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 2452696990 3795017 312 19 536 27 SRX8240583 Unrestricted 13.82 Metagenome 3300041813 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - C_33_wk_4 DOE Joint Genome Institute (JGI) 3300041813 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9702 -107.03 141565873 385740 202 8 340 18 SRX14808643 Unrestricted 7.47 Metagenome 3300025572 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-2-D (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025572 Metagenome Analysis spades v. 3.11.1 Yes Yes jsvander@ucdavis.edu Jean VanderGheynst Yes 27981239 Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 373368315 549920 215 11 257 9 SRX2556918 Unrestricted 0.0 Metagenome 3300012045 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ449 (21.06) DOE Joint Genome Institute (JGI) 3300012045 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.078 163.7214 785076910 1696950 645 1 1051 3 SRX3372064 Unrestricted 0.0 Metagenome 3300059709 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059709 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.234 -123.9135 359550379 782017 293 90 465 159 SRX2838062 Unrestricted 0.0 Metagenome 3300012918 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG DOE Joint Genome Institute (JGI) 3300012918 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 1968663665 4036766 1120 50 2122 94 SRX3373341 Unrestricted 0.0 Metagenome 3300025860 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic Microbial community sample from North Sea - COGITO 998_met_03 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025860 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Pelagic marine 54.184167 7.9 752928813 1372788 477 117 756 183 SRX802963 Unrestricted 0.0 Metagenome 3300001305 *Microbiome Permanent Draft Soil microbial communities from Mediterranean grasslands, California Grasslands soil microbial communities from Hopland, California, USA DOE Joint Genome Institute (JGI) 3300001305 Metagenome Analysis Yes Yes elbrodie@lbl.gov, ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 38.99297339 -123.0674491 713287419 1976082 1946 214 3510 374 SRX1978726, SRX1978725, SRX1978736, SRX1978728, SRX1978727, SRX1978729, SRX1978731, SRX1978730, SRX1978733, SRX1978732, SRX1978735, SRX1978724, SRX2041382, SRX1978734 0.0 Metagenome 3300022574 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 9 Selected contigs with viral hallmark genes Autonomous University of Barcelona 3300022574 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 2287909 3239 0 0 0 0 0.0 Metagenome 3300046543 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere DOE Joint Genome Institute (JGI) 3300046543 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1215 -123.2692 1166636726 1849180 363 66 516 100 Unrestricted 12.41 Metagenome 3300011159 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00219 Weill Cornell Medical College 3300011159 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.88 -73.9 11213680 15594 8 0 6 0 SRX822198 0.0 Metagenome 3300009168 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 DOE Joint Genome Institute (JGI) 3300009168 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wilkins.231@osu.edu, mike.wilkins@colostate.edu Michael Wilkins Yes 30086797 Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0956 -99.1001 1362198189 2705134 1035 12 1897 28 SRX2753786 Unrestricted 0.0 Metagenome 3300013489 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway plastic -P00905 Weill Cornell Medical College 3300013489 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Plastic surface city subway plastic 40.74 -73.91 18077071 28401 10 2 15 0 SRX822868 0.0 Metagenome 2209111017 *Microbiome Permanent Draft Salinewater microbial communities from Dead Sea Salinewater microbial communities from Dead Sea Pennsylvania State University 2209111017 Metagenome Analysis released per JGI data release policy No Yes mer251@psu.edu Matthew Rhodes No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Salinewater 31.500653 35.490986 6 55487725 150434 97 0 164 0 0.0 Metagenome 3300047370 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_150722.NP1 DOE Joint Genome Institute (JGI) 3300047370 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 733311248 1432417 495 94 681 150 Unrestricted 11.9 Metagenome 3300026737 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day9 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026737 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 39.849 -81.036 31028394 52649 40 0 63 6 SRX2996506 Unrestricted 0.0 Metagenome 3300005438 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG DOE Joint Genome Institute (JGI) 3300005438 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 3656274540 10727918 2848 160 4910 330 SRX2745013 Unrestricted 0.0 Metagenome 3300056802 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - APS4_20C_T0 DOE Joint Genome Institute (JGI) 3300056802 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 1924941819 2882683 550 129 806 167 Unrestricted 17.5 Metagenome 3300007814 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Slides-mat_host_7_15 DOE Joint Genome Institute (JGI) 3300007814 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jim.fredrickson@pnnl.gov, jim.fredrickson@pnnl.gov; binskeep@montana.edu Jim Fredrickson, Jim Fredrickson; William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.733 -110.709 3 95462548 230144 57 0 93 1 SRX2753797 Unrestricted 0.0 Metagenome 3300005757 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS872 Marine Biological Laboratory 3300005757 Metagenome Analysis Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow deep sea hydrothermal vent diffuse flow 18.375 -81.797 29132078 32038 5 0 5 0 0.0 Metagenome 3300001150 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 DOE Joint Genome Institute (JGI) 3300001150 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 19195168 60469 117 29 189 47 SRX3312008 Unrestricted 0.0 Metagenome 3300008272 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 158337416 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008272 Metagenome Analysis SPADES 3.6.1 released per Rekha Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 215647339 297493 246 0 354 0 0.0 Metagenome 3300009115 *Microbiome Permanent Draft Microbial communities in swimming pool backwashes Microbial communities from sand-filter backwash in Singapore swimming pools - WL-1 Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300009115 Metagenome Analysis megahit released per JGI data release policy Yes Yes martintayqx@gmail.com Martin Tay No Engineered Built environment Unclassified Unclassified Unclassified Swimming pool sandfilter backwash 1.28967 103.85007 23943296 62467 29 7 44 11 0.0 Metagenome 3300069523 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_001-O-20160719-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069523 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 10198946 31977 87 7 163 13 0.0 Metagenome 3300008718 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 2, subject 765094712 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008718 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 8946582 17836 8 2 9 9 SRX098543, SRX024091 0.0 Metagenome 3300007289 *Microbiome Permanent Draft Activated Sludge Process Metagenomes Activated sludge microbial communities from aeration tank of chemical wastewater treatment plant in Ankleshwar, Gujarat, India - sample Ank1 Xcelris Genomics 3300007289 Metagenome Analysis covaris released per JGI data release policy No Yes neetijadeja@hotmail.com Niti B Jadeja, Niti Jadeja No Engineered Wastewater Unclassified Activated Sludge Unclassified aeration tank of activted sludge process 21.6266027 73.0119202 137189454 266324 65 0 91 0 SRX803616 0.0 Metagenome 3300030352 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001977-108 Beijing Genomics Institute (BGI) 3300030352 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 133282799 161827 102 0 159 0 0.0 Metagenome 3300039044 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample39 King Abdulaziz City for Science and Technology (KACST) 3300039044 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 25.46 36.6 60516661 138858 79 4 129 6 SRX1097607 0.0 Metagenome 3300042788 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2015_1_7 NMDC pilot DOE Joint Genome Institute (JGI) 3300042788 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 6981372 8607 5 0 11 0 SRX2925230 0.0 Metagenome 3300049811 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Sediment microbial communities from freshwater wetland near Golden, Golorado, USA - Prado_201909_oxic_inoc DOE Joint Genome Institute (JGI) 3300049811 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Wetlands Freshwater Sediment Sediment 39.74466208 -105.2240163 2465820627 3963797 721 141 1119 214 Unrestricted 20.49 Metagenome 3300012312 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100385 University of Pennsylvania 3300012312 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 15748780 25823 11 0 15 0 SRX756272 0.0 Metagenome 3300045879 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from the Lower Geyser Basin, Yellowstone National Park, WY, United States - MSUNE_LGB_01 University of Wisconsin, Madison 3300045879 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.56963 -110.86518 61091792 89348 54 0 69 0 0.0 Metagenome 3300034163 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14 DOE Joint Genome Institute (JGI) 3300034163 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9123 -147.839 962001124 2130660 378 43 756 61 SRX7633918 Unrestricted 7.64 Metagenome 3300029743 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36795 Beijing Genomics Institute (BGI) 3300029743 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 207031866 267810 181 0 243 0 0.0 Metagenome 3300007267 *Microbiome Permanent Draft Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia - TJ12 time point Australian Centre for Ecogenomics 3300007267 Metagenome Analysis CLC released per JGI data release policy No Yes crinke@lbl.gov Christian Rinke No Environmental Aquatic Coastal Marine Unclassified marine surface water -34.1192 151.2267 82873772 122864 23 3 31 3 0.0 Metagenome 3300033516 *Microbiome Permanent Draft Sinkhole microbial mat communities from Lake Huron, Michigan, USA Sinkhole microbial mat communities from Lake Huron, Michigan, USA - SG0663 University of Michigan 3300033516 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy Yes Yes sgrim01@gmail.com Sharon Grim No Environmental Aquatic Sinkhole Freshwater Unclassified microbial mat 45.19843 -83.32721 270045997 314448 88 8 107 13 0.0 Metagenome 3300015314 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_20JUN2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015314 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 167985513 304955 9 33 18 35 SRX3923137 Unrestricted 10.12 Metagenome 3300013467 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00743 Weill Cornell Medical College 3300013467 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -74.0 9362592 10074 5 0 11 0 SRX822710 0.0 Metagenome 3300039964 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_001-M-13-7-20131122-GEN-DNA1 Argonne National Laboratory 3300039964 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 20312494 57628 44 1 56 4 ERX2134021 0.0 Metagenome 3300027644 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027644 Metagenome Analysis spades v. 3.11.1 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 423385541 889285 221 56 345 101 Unrestricted 0.0 Metagenome 3300000638 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 19AUG2008 epilimnion DOE Joint Genome Institute (JGI) 3300000638 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 7000000191 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 158337416 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000191 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 165473371 275205 0 0 0 0 0.0 Metagenome 3300028533 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung G4 DOE Joint Genome Institute (JGI) 3300028533 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Elk feces 38.04 -122.5 255321071 594841 608 27 976 37 SRX5092981, SRX5092982 Unrestricted 0.0 Metagenome 3300053228 *Microbiome Permanent Draft Soil microbial communities from various environments and locations in the USA Soil microbial communities from grassland in Ellensburg, Washington, USA - 1000S_FTA5_BTM_Z DOE Joint Genome Institute (JGI) 3300053228 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nancy.hess@pnnl.gov Nancy Hess No Environmental Terrestrial Grasslands Soil Unclassified soil 46.9216 -120.6586 2254776 4300 9 0 24 0 Unrestricted 1852.57 Metagenome 3300031658 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from Ellis Fjord, Antarctic Ocean - #78 DOE Joint Genome Institute (JGI) 3300031658 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5958 78.1913 512812684 1109972 189 243 257 418 SRX5649553 Unrestricted 20.49 Metagenome 3300014322 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D1 DOE Joint Genome Institute (JGI) 3300014322 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.107536 -121.649704 400477794 959272 420 19 784 40 SRX7188820 Unrestricted 0.0 Metagenome 3300042367 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME01Nov2011-rr0816 DOE Joint Genome Institute (JGI) 3300042367 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 427113364 712550 168 30 248 44 Unrestricted 26.18 Metagenome 3300019142 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - mid late stage, 3 min after wetting v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300019142 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 485716959 998209 525 27 806 48 0.0 Metagenome 3300003825 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA10M DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003825 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu, tmcmahon@engr.wisc.edu; shaomei.he@gmail.com Katherine McMahon, Katherine McMahon; Shaomei He No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 27720094 64554 53 0 117 0 SRX2565080 Unrestricted 0.0 Metagenome 7000000069 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 764588959 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000069 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Ivanova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 168906892 249914 0 0 0 0 0.0 Metagenome 3300037202 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 711 P-2-D DOE Joint Genome Institute (JGI) 3300037202 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0472 788406978 1408400 260 6 405 5 SRX8145082 Unrestricted 12.16 Metagenome 3300036864 *Microbiome Permanent Draft Soil microbial communities from fields in the western Corn Belt region, Nebraska, United States Soil microbial communities from fields in the western Corn Belt region, Nebraska, United States - Switchgrass plot 313, 120 kg/ha N, depth 4 DOE Joint Genome Institute (JGI) 3300036864 Metagenome Analysis metaspades v. 3.13.0 Yes Yes marty.schmer@ars.usda.gov Marty Schmer No Environmental Terrestrial Agricultural land Soil Unclassified soil 41.1681 -96.4109 1892686249 2958710 472 4 812 10 SRX8296520 Unrestricted 13.78 Metagenome 3300026851 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Synthetic microbial communities from Ohio, USA - SynthPrep_5_END_DS10_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026851 Metagenome Analysis spades v. 3.11.1 Yes Yes reginalamendella@gmail.com Regina Lamendella No Engineered Bioreactor Activated sludge Aerobic Unclassified Synthetic lake water 40.0 -83.0145 96055456 137035 30 0 52 0 SRX2839588, SRX2839587 Unrestricted 0.0 Metagenome 3300060310 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - E4W8 DOE Joint Genome Institute (JGI) 3300060310 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 244754961 446008 264 73 476 89 Unrestricted 0.0 Metagenome 3300042016 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 DOE Joint Genome Institute (JGI) 3300042016 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.201 -97.9447 426096191 1050268 442 37 867 63 SRX14829371 Unrestricted 9.42 Metagenome 3300051165 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Congo River, Brazzaville, Congo - CONGO_059 DOE Joint Genome Institute (JGI) 3300051165 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater -4.3092 15.2356 343551310 805730 370 58 651 82 Restricted 34.77 Metagenome 3300043412 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Kuparuk River, Toolik Field Station, Alaska, USA - kuparukriver_2019_sw_WHONDRS-S19S_0047 DOE Joint Genome Institute (JGI) 3300043412 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 68.6427 -149.4034 178093946 313310 347 101 600 154 Unrestricted 22.65 Metagenome 3300009447 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110509 DOE Joint Genome Institute (JGI) 3300009447 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de, hteeling@mpi-bremen.de; agrieb@mpi-bremen.de Hanno Teeling, Hanno Teeling; Anissa Grieb Yes 27054497, 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 707288605 1330386 601 106 933 197 SRX2999670 Unrestricted 0.0 Metagenome 3300005517 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4) (version 4) DOE Joint Genome Institute (JGI) 3300005517 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 1606232125 4499594 1542 267 2759 397 SRX2565054, SRX2565055, SRX2565056 Unrestricted 0.0 Metagenome 3300044237 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T108 S DOE Joint Genome Institute (JGI) 3300044237 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.812 -64.3834 281290087 678452 9 4 15 7 Unrestricted 37.48 Metagenome 3300005831 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.43_YBM Oregon Health and Science University (OHSU) 3300005831 Metagenome Analysis unassembled released per JGI data release policy No Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Unclassified Sediment Unclassified sediment (intertidal) 46.17469 -123.84933 1098725275 2003922 1121 40 1849 79 0.0 Metagenome 3300070464 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_027-O-20160727-COMP-DNA1 3300070464 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 21935725 69794 90 4 172 8 0.0 Metagenome 3300001332 *Microbiome Permanent Draft Hypersaline viral and bacterial communities from Bras del Port, Santa Pola, Spain Hypersaline viral communities from Bras del Port, Santa Pola, Spain Lifesequencing S.L. 3300001332 Metagenome Analysis released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Hypersaline samples 38.2 0.6 118104459 349803 3 0 1 0 0.0 Metagenome 3300027940 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T3_25-Nov-14 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027940 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 53488192 139629 88 31 180 47 SRX2838892 Unrestricted 0.0 Metagenome 3300013148 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100543 University of Pennsylvania 3300013148 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 13916229 31602 27 7 57 14 SRX756211 0.0 Metagenome 3300045135 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Kowloon Bay, Hong Kong - HKS2 DOE Joint Genome Institute (JGI) 3300045135 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Unclassified Marine Unclassified Seawater 22.3 114.2 950719191 1914059 765 108 1106 187 Unrestricted 26.74 Metagenome 3300008086 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-12 DOE Joint Genome Institute (JGI) 3300008086 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 991734099 1777693 957 29 1648 42 SRX3198186 Unrestricted 0.0 Metagenome 3300030130 *Microbiome Permanent Draft Simulated microbial communities from bacterial mixture, Uppsala, Sweden Simulated microbial communities from bacterial mixture, Uppsala, Sweden - Bulk4 Uppsala University 3300030130 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Simulated 59.8509005 17.6300093 8621101 7580 4 0 5 0 0.0 Metagenome 3300002270 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 15JUL2010 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002270 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 12793579 35552 55 5 105 8 SRX1988903 Unrestricted 0.0 Metagenome 3300025453 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_4_40 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025453 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 217063626 410658 105 2 149 3 SRX3002040 Unrestricted 0.0 Metagenome 3300045548 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-467 Genome Quebec 3300045548 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.151407 -122.931788 1193173176 2563229 616 170 1020 356 0.0 Metagenome 3300011005 *Microbiome Permanent Draft Rumen microbial communities from healthy moose, Palmer, Alaska Rumen fluid microbial communities from healthy moose, Palmer, Alaska- post 0.2 um filtrate Ohio State University 3300011005 Metagenome Analysis IDBA-UD released by Lindsey Solden No Yes solden.2@osu.edu Lindsey Solden Yes 30356154 Host-associated Mammals Stomach Digestive system Rumen Moose rumen 61.5997 -148.1128 333754670 533331 176 3 131 4 0.0 Metagenome 3300064903 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 688 in Beauvallon, Alberta, Canada - S00JY_0089 Microbiome Insights 3300064903 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.394731 -111.1955062 78953786 116754 46 2 89 1 0.0 Metagenome 3300013535 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Human oral microbial communities from various locations - University of British Columbia - SCG23 University of British Columbia 3300013535 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Unclassified Human oral 167294 427 0 0 2 0 SRX143132 0.0 Metagenome 2199352026 *Microbiome Permanent Draft Bovine rumen microbial communities from Vernon, TX, USA Bovine rumen microbial communities from Vernon, TX, USA, Sample 669 Texas A and M University 2199352026 Metagenome Analysis Velvet released per Rekha No Yes wshi@ag.tamu.edu Gray Weibing Shi No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen 34.154 -99.264 26083354 35237 0 0 0 0 0.0 Metagenome 3300055514 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.3C.12 SIP fraction DOE Joint Genome Institute (JGI) 3300055514 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 166271524 276737 135 12 204 15 Unrestricted 18.73 Metagenome 3300042389 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME07Aug2008-rr0847 DOE Joint Genome Institute (JGI) 3300042389 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 928808861 1483303 393 27 529 41 Unrestricted 16.67 Metagenome 3300006433 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T18 (3) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006433 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 35285055 71645 42 0 78 0 0.0 Metagenome 3300043121 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Shale gas microbial communities from Fort St. John, British Columbia, Canada - PROGRESS HHA (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043121 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back shale gas 57.0 -123.0 12193366 14024 17 0 14 0 SRX8356927 Unrestricted 906.33 Metagenome 7000000087 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 160218816 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000087 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 120746708 217207 0 0 0 0 0.0 Metagenome 3300022701 *Microbiome Permanent Draft Carpinteria Salt Marsh Metagenomes 2014 to 2017 Sediment microbial communities from marsh intertidal zone in Carpinteria, CA, United States - S5 University of California, Irvine 3300022701 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Aquatic Intertidal zone Marine Sediment Sediment 34.401 -119.534 388256737 410475 86 1 95 1 0.0 Metagenome 3300012279 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metalplastic -P01489 Weill Cornell Medical College 3300012279 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface City subway metal/plastic 40.63 -74.01 52096217 82706 43 0 66 0 SRX823369 0.0 Metagenome 3300011793 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01518 Weill Cornell Medical College 3300011793 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.99 18418119 28819 14 0 17 0 SRX823394 0.0 Metagenome 3300050031 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 S1 20-24 DOE Joint Genome Institute (JGI) 3300050031 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3532 19.0474 639447986 833045 139 1 194 1 Restricted 25.23 Metagenome 7000000490 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159571453 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000490 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 123142464 184515 0 0 0 0 0.0 Metagenome 3300027499 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Fresh water mixed with fracking chemicals microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027499 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Engineered Industrial production Input fracking water Chemical products Unclassified Fresh water mixed with fracking chemicals 40.178 -81.073 308462441 583072 214 39 336 65 SRX2925264 Unrestricted 0.0 Metagenome 3300007157 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2015_2_5 DOE Joint Genome Institute (JGI) 3300007157 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 15192315 39571 83 0 429 0 SRX2752459 Unrestricted 0.0 Metagenome 3300070779 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_029-M-20190702-COMP-DNA1 3300070779 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 2225116 7315 20 1 30 3 0.0 Metagenome 3300006040 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_30-Apr-14 DOE Joint Genome Institute (JGI) 3300006040 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 424112780 1368208 768 250 1219 485 SRX2838888 Unrestricted 0.0 Metagenome 3300013840 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100473 University of Pennsylvania 3300013840 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3146271 8999 9 3 15 3 SRX756525 0.0 Metagenome 3300023290 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA -- CDI_10B University of California, Irvine 3300023290 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 135771072 135536 12 0 25 0 0.0 Metagenome 3300006960 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Final time point T65 (3) (BES) benzoate enrichments of Methanogenic microbial communities using Athabasca oil sands as inoculum Shell Corporation 3300006960 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 23122741 36722 25 0 55 0 0.0 Metagenome 3300035096 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - T6-14 Autonomous University of Barcelona 3300035096 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 176331407 726280 1776 0 3179 0 0.0 Metagenome 7000000205 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 158742018 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000205 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 29684592 59854 0 0 0 0 0.0 Metagenome 3300033273 *Microbiome Permanent Draft Marine Lake Metagenomes Marine lake microbial communities from Ngermeuangel Lake in Palau - P13025_2B Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300033273 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy No Yes mbeman@ucmerced.edu Michael Beman No Environmental Aquatic Marine lake Marine Unclassified Marine 7.32285 134.50855 0 254738292 289745 89 2 81 2 0.0 Metagenome 3300033494 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from Middle Island sinkhole, Lake Huron, Michigan, United States - MIS.2016.226 DOE Joint Genome Institute (JGI) 3300033494 Metagenome Analysis spades v. 3.13.0 Yes Yes macgregb@umn.edu; sgrim@umich.edu Barbara MacGregor; Sharon Grim No Environmental Aquatic Lake Freshwater Sediment microbial mat 45.1993 -83.3279 272991327 580000 222 18 366 31 SRX7582714 Unrestricted 25.9 Metagenome 3300003849 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - As.Sf.rz DOE Joint Genome Institute (JGI) 3300003849 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes avisel@lbl.gov, laila.partida@cinvestav.mx Axel Visel, Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.7658 -100.163 26275579 61839 305 66 544 110 SRX2122696 Unrestricted 0.0 Metagenome 3300004272 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG04_land_8/20/14_0.20 DOE Joint Genome Institute (JGI) 3300004272 Metagenome Analysis MEGAHIT v. 0.2.0 revert back to private per Christa Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 7342295 28133 31 1 62 3 SRX3348125 Unrestricted 0.0 Metagenome 3300071126 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_002-O-20180724-COMP-DNA1 3300071126 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 67361753 199928 149 8 281 11 0.0 Metagenome 3300019997 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - H3m2 DOE Joint Genome Institute (JGI) 3300019997 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9825 -107.0101 99372877 235235 216 18 477 22 SRX3944882, SRX3944881 Unrestricted 0.0 Metagenome 3300057154 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2019-0029 DOE Joint Genome Institute (JGI) 3300057154 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.73472222 -83.34222222 605480737 1235013 411 152 681 214 Unrestricted 21.86 Metagenome 3300002329 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP17-I4 3300002329 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300001451 *Microbiome Permanent Draft Goat rumen microbial communities from Langston University, Oklahoma, USA Goat rumen bacterial communities from Langston, Oklahoma, USA - velvet Assemble Cornell University 3300001451 Metagenome Analysis released per Rekha No Yes zsuping@tnstate.edu Suping Zhou No Host-associated Mammals Stomach Digestive system Rumen Goat rumen 35.453976 -97.515884 1986802579 10291534 2261 135 5291 138 0.0 Metagenome 3300007706 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1555B-3 DOE Joint Genome Institute (JGI) 3300007706 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2024 -123.9409 277215454 556195 422 64 631 104 SRX2753734 Unrestricted 6.19 Metagenome 3300011269 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG DOE Joint Genome Institute (JGI) 3300011269 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Saprolite Vadose zone soil 39.7291 -123.6419 2414379661 4899776 1171 28 2125 66 SRX2538108 Unrestricted 0.0 Metagenome 3300020384 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B000000441 (ERX556023-ERR599110) CEA Genoscope 3300020384 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -35.2528 26.317 666248037 1759337 585 57 950 135 0.0 Metagenome 3300029014 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 345_12M Beijing Genomics Institute (BGI) 3300029014 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 70875124 85702 63 0 87 0 ERX491099 0.0 Metagenome 3300044747 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 195-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044747 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.8567 -107.0927 546033439 1372198 366 15 660 20 Unrestricted 6.61 Metagenome 3300012320 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100491 University of Pennsylvania 3300012320 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 15380095 34607 19 0 27 0 SRX756507 0.0 Metagenome 3300069497 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_016-M-20130627-COMP-DNA1 re-annotation Argonne National Laboratory 3300069497 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 4551551 14628 45 5 105 6 0.0 Metagenome 3300048026 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_190619.NP1 DOE Joint Genome Institute (JGI) 3300048026 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 646632257 1322222 367 45 569 84 Unrestricted 15.66 Metagenome 3300001260 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 26JUN2008 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300001260 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.099444 -89.404444 23657789 43389 26 5 37 8 SRX3310918 Unrestricted 0.0 Metagenome 3300043420 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Muddy Creek, Edgewater, Maryland, USA - muddycreek_2019_sw_WHONDRS-S19S_0082 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043420 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.8749 -76.5464 711559359 1210349 343 66 493 102 Unrestricted 20.75 Metagenome 3300055496 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.1W.10 SIP fraction DOE Joint Genome Institute (JGI) 3300055496 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 245858773 432384 275 35 398 42 Unrestricted 16.38 Metagenome 3300050143 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_RHK2_4_to_SEK2 DOE Joint Genome Institute (JGI) 3300050143 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.245 567506282 821691 202 70 354 115 Unrestricted 20.48 Metagenome 3300059699 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059699 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 136257463 373624 159 16 217 30 SRX2753583 Unrestricted 0.0 Metagenome 3300029233 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Sweden Sewage sludge microbial communities from sewage treatment plant in Sweden - SWESTP59 - Uppsala-primary/surplus 201 University of Gothenburg 3300029233 Metagenome Analysis released Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified sludge 59.844519 17.659844 102850524 201562 185 2 357 3 0.0 Metagenome 3300053094 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere DOE Joint Genome Institute (JGI) 3300053094 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.120986 -123.26911 1038112666 1827793 410 197 660 238 Unrestricted 26.04 Metagenome 3300012643 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100655 University of Pennsylvania 3300012643 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 27299419 58841 19 0 35 0 SRX756439 0.0 Metagenome 3300019887 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - U1c2 DOE Joint Genome Institute (JGI) 3300019887 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9225 -106.9538 543135664 1061880 213 19 417 20 SRX3958452, SRX3958453 Unrestricted 0.0 Metagenome 3300014310 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_TuleA_D1 DOE Joint Genome Institute (JGI) 3300014310 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jzz0026@lbl.gov; sgtringe@lbl.gov Jinglie Zhou; Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.049923 -121.765244 334884573 775631 397 6 820 7 SRX7182421 Unrestricted 0.0 Metagenome 3300070378 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_002-O-20190716-COMP-DNA1 3300070378 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 20899195 62233 55 5 102 7 0.0 Metagenome 3300030431 *Microbiome Permanent Draft Human fecal microbial community of Hadza hunter-gatherer and regular subjects from Tanzania and Italy Human fecal microbial community from subjects in taly - 20002 University of Bologna 3300030431 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 44.4950537 11.3427401 58231737 99081 102 0 211 0 0.0 Metagenome 3300070633 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_001-M-20170731-COMP-DNA1 3300070633 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 23409511 71028 54 10 103 21 0.0 Metagenome 3300021067 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20-13C DOE Joint Genome Institute (JGI) 3300021067 Metagenome Analysis spades v. 3.10.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.305 -116.2547 278253160 604522 271 16 496 21 SRX3936776 Unrestricted 27.63 Metagenome 3300046054 *Microbiome Permanent Draft Halite microbial communities from Atacama Desert, Chile Halite microbial communities from Salar Grande, Atacama Desert, Chile - SG1 Novogene 3300046054 Metagenome Analysis metaWRAP v. 1.3.2 No Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Halite Rock-dwelling (endoliths) Unclassified Halite -20.952 -70.016 120925567 143076 14 1 18 1 0.0 Metagenome 3300026247 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from above oceans and continental USA - SEAC4RS-RF6-003 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026247 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 20243295 68772 65 8 97 16 Unrestricted 0.0 Metagenome 3300056689 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.5W.10 SIP fraction DOE Joint Genome Institute (JGI) 3300056689 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 79188755 160411 91 2 175 7 Unrestricted 16.78 Metagenome 3300004086 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius tantulus BELIZE.2 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300004086 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 542205829 1266615 28 7 32 20 SRX3340613, SRX3340612 Unrestricted 0.0 Metagenome 3300010223 *Microbiome Permanent Draft Freshwater microbial communities enriched with nitrile substrates Freshwater aquifer microbial community from Bangor, North Wales, UK, before enrichment, replicate 3 Fidelity Systems Inc 3300010223 Metagenome Analysis Phred/Phrap/Consed v. 23.0 released per JGI data release policy Yes Yes stepan.toshchakov@gmail.com Stepan Toshchakov No Environmental Aquatic Groundwater Deep subsurface Unclassified freshwater 53.23 -4.13 81600217 191468 54 0 102 0 0.0 Metagenome 3300009572 *Microbiome Permanent Draft Marine microbial communities associated with Trichodesmium colonies (puff morphology) from Station ALOHA, North Pacific Subtropical Gyre Marine microbial communities associated with Trichodesmium colonies (puff morphology) from Station ALOHA, North Pacific Subtropical Gyre - SampleE20 Oregon State University 3300009572 Metagenome Analysis MEGAHIT v1.0.1 Published on request from submitter on 04/04/2017 No Yes rosiegradoville@gmail.com Mary Gradoville Yes 28729854 Environmental Aquatic Pelagic zone Marine Unclassified marine 22.0 -158.0 467673615 1230843 731 37 543 46 0.0 Metagenome 3300003097 *Microbiome Permanent Draft Insect gut microbial communities from Hangzhou, China Cutworm gut microbial communities from Hangzhou, China Texas A and M University 3300003097 Metagenome Analysis Velvet v. 1.0.4 Made public because these are downloaded from Genbank No Yes syuan@tamu.edu Joshua S. Yuan, Joshua Yuan Yes 23326236 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Insect gut 5348496 7964 1 0 5 3 0.0 Metagenome 3300065603 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 800 in Cowley, Alberta, Canada - S00JY_0245 Microbiome Insights 3300065603 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.2618822 -113.3619356 128500677 189602 76 4 122 10 0.0 Metagenome 3300021089 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 12015 DOE Joint Genome Institute (JGI) 3300021089 Metagenome Analysis spades v. 3.10.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.7468 -122.0193 1363218666 2886344 822 171 1260 315 SRX4010481 Unrestricted 25.93 Metagenome 3300002728 *Microbiome Permanent Draft Contaminated subsurface sediment microbial communities from Dusseldorf, Germany, analyzing toluene degradation Contaminated subsurface sediment microbial communities from Dusseldorf, Germany, analyzing toluene degradation - BAC_Dus_C40 3300002728 Metagenome Analysis de novo assembly algorithm of CLC Genomics Workbench released by JGI data releasing policy No Yes emnabouhajja@gmail.com Emna Bouhajja No Environmental Terrestrial Sediment Geologic Unclassified Contaminated subsurface sediment 51.21 6.46 127104 126 0 0 0 0 0.0 Metagenome 3300020560 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes) DOE Joint Genome Institute (JGI) 3300020560 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 163842512 354347 137 20 238 37 SRX1987802 Unrestricted 0.0 Metagenome 3300038776 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog66 BILS 3300038776 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 2675168 7220 14 1 17 2 ERX1594888 0.0 Metagenome 3300006664 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T5 (2) BES, Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006664 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl .ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 34805719 65318 49 0 76 0 0.0 Metagenome 3300001858 *Microbiome Permanent Draft Trichloroethene dechlorinating bioreactor microbial communities from Berkeley, California, USA Trichloroethene dechlorinating bioreactor microbial communities from Berkeley, California, USA - LACBS007B 3300001858 Metagenome Analysis released by JGI data releasing policy No Yes benstenuit@gmail.com Benoit stenuit, Ben A. Stenuit No Engineered Bioremediation Chloroethene Tetrachloroethylene and derivatives Bioreactor Trichloroethene dechlorinating bioreactor 37.87 -122.26 12880519 27009 0 0 0 0 0.0 Metagenome 3300019869 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - U3m2 DOE Joint Genome Institute (JGI) 3300019869 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9203 -106.9495 195294814 422360 197 13 398 16 SRX3944428, SRX3944427 Unrestricted 0.0 Metagenome 3300033625 *Microbiome Permanent Draft Metagenomic SGS 2x251 Cornfield soil microbial communities from Madison, WI, USA - CF11 Illumina 3300033625 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Agricultural land Soil 43.056543 -89.477477 373682744 1428099 236 13 521 28 0.0 Metagenome 3300012196 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00748 Weill Cornell Medical College 3300012196 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -74.01 41287675 62600 30 4 40 6 SRX822715 0.0 Metagenome 2022920018 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP16 Fairy Spring Red Layer v2 (version 2) DOE Joint Genome Institute (JGI) 2022920018 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23761787 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.533365 -110.849887 9-9.2 31835426 56207 220 0 33 0 Unrestricted 0.0 Metagenome 3300029757 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 073_4_28_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029757 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 149562673 216599 167 0 225 0 0.0 Metagenome 3300054058 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_16_100 re-annotation DOE Joint Genome Institute (JGI) 3300054058 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 291670651 524049 128 0 165 1 SRX3003646 0.0 Metagenome 3300025115 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 52m metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025115 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; sean.crowe@ubc.ca Ramunas Stepanauskas; Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Anoxic lake water -1.78 29.2 390887707 788983 355 21 594 39 SRX2525300 Unrestricted 0.0 Metagenome 3300070972 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_045-M-20200730-COMP-DNA1 3300070972 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 68512200 200605 115 12 203 17 0.0 Metagenome 3300017573 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS378 with 0.1UM filter JGI facility at Oak Ridge National Laboratory 3300017573 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 34426622 91659 31 4 43 7 0.0 Metagenome 3300070394 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_035-M-20180709-COMP-DNA1 3300070394 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 47875638 144344 92 10 153 19 0.0 Metagenome 3300020109 *Microbiome Permanent Draft Freshwater microbial communities from Lake Tanganyika, Tanzania Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015016 Mahale Deep Cast 400m DOE Joint Genome Institute (JGI) 3300020109 Metagenome Analysis spades v. 3.10.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater lake -6.1786 29.658 2234159249 4281133 1305 56 2024 76 SRX4810993 Unrestricted 25.05 Metagenome 3300025168 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-53 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025168 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 49.5666 -138.6666 708201075 1488028 39 12 53 16 SRX3316460 Unrestricted 0.0 Metagenome 3300046385 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_147 DOE Joint Genome Institute (JGI) 3300046385 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9802 -106.9905 194130019 550954 636 119 1180 178 Restricted 0.0 Metagenome 2228664008 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Tailings pond microbial communities from Northern Alberta -TP6_2008_30ft: McGill University 2228664008 Metagenome Analysis Unassembled No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Bioremediation Polycyclic aromatic hydrocarbons Persistent organic pollutants (POP) Unclassified Hydrocarbon resource environments 57.02 -111.55 7.26 141534039 389458 161 0 339 0 0.0 Metagenome 3300053078 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere DOE Joint Genome Institute (JGI) 3300053078 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1214 -123.2691 615009883 1060114 290 24 487 41 Unrestricted 0.0 Metagenome 3300006349 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159146620 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006349 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 72084246 101070 50 0 90 0 0.0 Metagenome 3300029438 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 026_10_28_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029438 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 233711893 333985 244 0 328 0 0.0 Metagenome 3300048061 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_200812.NP1 DOE Joint Genome Institute (JGI) 3300048061 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 977251591 2157086 613 153 884 274 Unrestricted 13.55 Metagenome 3300049576 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 DOE Joint Genome Institute (JGI) 3300049576 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.40849 -82.168434 1480232626 2498061 565 15 1034 26 Unrestricted 14.59 Metagenome 3300003594 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI073_LV_165m_DNA DOE Joint Genome Institute (JGI) 3300003594 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 136192577 259712 122 3 210 2 Unrestricted 0.0 Metagenome 3300040579 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Barrow Environmental Observatory, Tundra, AK, USA - BARR_003-O-20170807-COMP-DNA1 Battelle Memorial Institute 3300040579 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 71.28241 -156.61936 1990533 5103 14 0 17 0 0.0 Metagenome 3300005951 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_250_ad_251m_LV_A DOE Joint Genome Institute (JGI) 3300005951 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 731918154 2144767 958 87 1721 156 SRX2779447 Unrestricted 0.0 Metagenome 3300029106 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 172_M Beijing Genomics Institute (BGI) 3300029106 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 172446799 236114 139 0 218 0 ERX490968 0.0 Metagenome 3300012029 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #83 DOE Joint Genome Institute (JGI) 3300012029 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 100880304 195118 87 6 171 9 SRX3241669 Unrestricted 0.0 Metagenome 3300031551 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-110 DOE Joint Genome Institute (JGI) 3300031551 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh sediment 42.722 -70.847 565361781 971456 451 3 682 4 SRX6465382 Unrestricted 16.53 Metagenome 3300021564 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4869-30-3-4_MG DOE Joint Genome Institute (JGI) 3300021564 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.0074 -110.591 5573716 16695 8 0 27 0 SRX3982091 Unrestricted 161.57 Metagenome 3300046557 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere DOE Joint Genome Institute (JGI) 3300046557 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1208 -123.2691 609592664 989373 229 56 405 74 Unrestricted 17.3 Metagenome 7000000232 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 764285508 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000232 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 151031646 248881 0 0 0 0 0.0 Metagenome 3300026931 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T2_23-Sept-14 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026931 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 65673691 179308 148 64 241 105 SRX2838895 Unrestricted 0.0 Metagenome 3300026776 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - site 1 bottle 13 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026776 Metagenome Analysis spades v. 3.11.1 Yes Yes blumerschuette@oakland.edu; rmkelly@ncsu.edu Sara Blumer-Schuette; Robert Kelly No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6102 -110.4387 12854215 17367 30 0 19 0 SRX2554489 Unrestricted 0.0 Metagenome 3300010428 *Microbiome Permanent Draft Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 14_58_20_212_A1 metaG DOE Joint Genome Institute (JGI) 3300010428 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes Steve.Brown@lanzatech.com Steven Brown Yes 30202438 Engineered Bioreactor Anaerobic Semi-continuous Digestate Switchgrass degrading 43.726 -72.1429 271588846 412828 525 1 671 7 SRX3291918 Unrestricted 0.0 Metagenome 3300032288 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains Ecozone, Canada - Lake 08-135 Genome Quebec 3300032288 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.604656 -74.980869 598198882 1295867 234 34 405 64 0.0 Metagenome 3300002020 *Microbiome Permanent Draft Permafrost and active layer soil microbial communities from McGill Arctic Research Station (MARS), Canada, for enrichment studies Permafrost and active layer soil microbial communities from McGill Arctic Research Station (MARS), Canada, for enrichment studies - Sample_3G 3300002020 Metagenome Analysis released by JGI data releasing policy No Yes Tullis Onstott; Tatiana Vishnivetskaya; Karuna Chourey; Susan M. Pfiffner;Alice Layton No Environmental Terrestrial Unclassified Soil Permafrost Permafrost and active layer soil 79.26 -90.46 36356733 77919 22 1 41 0 0.0 Metagenome 3300005743 *Microbiome Permanent Draft Microbial community analysis of soil from Ankleshwar, Gujarat, India Microbial community analysis of soil from Ankleshwar, Gujarat, India - Control 1 Anand Agricultural University 3300005743 Metagenome Analysis Unknown released per JGI data release policy No Yes jennyjohnsongreat@gmail.com Jenny Johnson No Environmental Terrestrial Unclassified Soil Unclassified soil 21.6 73.0 0 0 0 0 0 0 0.0 Metagenome 3300025447 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA17M (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025447 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu; shaomei.he@gmail.com Katherine McMahon; Shaomei He No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 183250561 400022 231 1 495 0 SRX2565126 Unrestricted 0.0 Metagenome 3300029517 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005359-14 Beijing Genomics Institute (BGI) 3300029517 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 170001014 215356 123 0 192 0 0.0 Metagenome 3300050267 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_21 DOE Joint Genome Institute (JGI) 3300050267 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.491 160.905 333748696 549641 109 5 163 15 SRX18235914 Restricted 48.69 Metagenome 3300035129 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D1105S12 DOE Joint Genome Institute (JGI) 3300035129 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0387 507324748 1157017 445 3 721 3 SRX8255957 Unrestricted 6.89 Metagenome 3300022907 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011511BT metaG (version 2) DOE Joint Genome Institute (JGI) 3300022907 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 723304292 1338444 337 40 588 84 SRX4070918 Unrestricted 37.74 Metagenome 2001200001 *Microbiome Finished Soil microbial communities from Waseca County, Minnesota, USA Soil microbial communities from Waseca County, Minnesota, USA - Sample 10150 DOE Joint Genome Institute (JGI) 2001200001 Metagenome Analysis Phrap No Yes emrubin@lbl.gov Eddy Rubin Yes 15845853 Environmental Terrestrial Unclassified Soil Agricultural land Soil 44.152652 -93.519745 6-7 152406385 185274 23 0 20 0 0.0 Metagenome 3300029831 *Microbiome Permanent Draft Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil - Pandora_C4 Reanalysis Center for Advanced Technologies in Genomics, Sao Paulo University 3300029831 Metagenome Analysis metaSPAdes v. 3.12.0 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 43363983 84616 91 0 116 0 0.0 Metagenome 3300071099 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_001-M-20180620-COMP-DNA1 3300071099 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 20673682 65556 60 10 143 23 0.0 Metagenome 3300022691 *Microbiome Permanent Draft Cross-CZO Soil Depth Profiles Soil microbial communities from Calhoun CZO, South Carolina, United States - 60cm depth University of Colorado 3300022691 Metagenome Analysis Megahit v. 1.0.6 released by Tess Brewer No Yes tebr8990@colorado.edu Tess Brewer No Environmental Terrestrial Temperate forest Soil Bulk soil soil 34.6074 -81.7228 8.44 44380306 101763 11 2 19 12 0.0 Metagenome 3300014019 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00830 Weill Cornell Medical College 3300014019 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.73 -74.0 23493894 36894 7 0 14 0 SRX822796 0.0 Metagenome 3300034737 *Microbiome Permanent Draft Filamentous streamer microbial communities from Yellowstone Lake hydrothermal vents, YNP, Wyoming, USA Filamentous streamer microbial communities from Yellowstone Lake hydrothermal vent, YNP, Wyoming, USA - 2016_B01 Marine Biological Laboratory 3300034737 Metagenome Analysis SPAdes v. 3.11 The metagenome has been published in a paper. No Yes mcgucas@gmail.com Luke McKay No Environmental Aquatic Lake Freshwater Unclassified filamentous streamer 44.508123 -110.357427 52260034 68869 23 5 29 4 0.0 Metagenome 3300011603 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00704 Weill Cornell Medical College 3300011603 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.86 -73.92 27493654 39472 9 0 13 0 SRX822671 0.0 Metagenome 3300006748 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159227541 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006748 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 119176681 174149 102 0 124 0 0.0 Metagenome 3300028371 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #899 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028371 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 145847415 273815 137 18 223 27 SRX3242177 Unrestricted 0.0 Metagenome 3300048513 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - Maria520 DOE Joint Genome Institute (JGI) 3300048513 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Sand Soil Desert sand -78.0942 163.7904 315473138 689733 259 0 489 0 Unrestricted 20.72 Metagenome 3300000531 *Microbiome Permanent Draft Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNB_Illumina_Assembled Beijing Genomics Institute (BGI), Lifesequencing S.L. 3300000531 Metagenome Analysis Flash v1.0.3; SOAPdenovo released per JGI data release policy No Yes manuel.fernandez@eez.csic.es Fernandez-Lopez, Manuel No Host-associated Plants Rhizosphere Roots Soil Quercus rhizosphere 36.94932 -3.4176 65814827 234233 532 44 998 74 0.0 Metagenome 3300000817 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 28MAY2007 hypolimnion v6 (version 5) DOE Joint Genome Institute (JGI) 3300000817 Metagenome Analysis released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 998363 1110 0 0 0 0 Unrestricted 0.0 Metagenome 3300022227 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300022227 Metagenome Analysis spades v. 3.11.1-check Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Seawater 18.2 -104.2 1669205929 3142491 982 38 1646 68 SRX7238462 Unrestricted 29.38 Metagenome 3300004010 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWA_D1 DOE Joint Genome Institute (JGI) 3300004010 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 37.926434 -122.509186 968325337 2830081 913 19 1883 25 SRX7142926 Unrestricted 0.0 Metagenome 3300026163 *Microbiome Permanent Draft Anaerobic reactors microbiome study Activated sludge microbial communities from lab. scaled anaerobic digester in Belvaux, Luxembourg - ACS2-55 University of Luxembourg 3300026163 Metagenome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 49.506216 5.943617 431119898 510547 120 0 252 4 0.0 Metagenome 3300044276 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - DOSP5-9-6-19 DOE Joint Genome Institute (JGI) 3300044276 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.098 -120.7172 274250189 836497 548 62 974 106 Restricted 6.74 Metagenome 3300020055 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101411CT metaG (spades assembly) DOE Joint Genome Institute (JGI) 3300020055 Metagenome Analysis spades v. 3.10.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1323426462 2719257 533 52 843 109 SRX3919530 Unrestricted 21.43 Metagenome 3300000264 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_500 DOE Joint Genome Institute (JGI) 3300000264 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 48.65 -126.666667 100368729 259887 93 3 226 5 Unrestricted 0.0 Metagenome 3300013397 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100172 University of Pennsylvania 3300013397 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 2732648 3931 5 2 7 7 SRX756361 0.0 Metagenome 3300046717 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 soil DOE Joint Genome Institute (JGI) 3300046717 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.120791 -123.271619 5.46 867205497 1358878 226 16 362 19 Unrestricted 12.22 Metagenome 3300031711 *Microbiome Permanent Draft Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG DOE Joint Genome Institute (JGI) 3300031711 Metagenome Analysis spades v. 3.12.0 Yes Yes rbneum@uw.edu Rebecca Neumann No Host-associated Plants Rhizosphere Roots Soil rhizosphere 47.6516 -122.3045 1464601333 2874215 745 8 1250 20 SRX5787928 Unrestricted 9.83 Metagenome 3300043256 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_4500m_C5_20cm25cm (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043256 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 35.689 -123.0778 523370351 869253 246 2 408 1 SRX8383001 Unrestricted 35.91 Metagenome 3300050289 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_49 DOE Joint Genome Institute (JGI) 3300050289 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -75.482 159.591 545837331 826886 120 22 178 27 SRX18235987 Restricted 22.11 Metagenome 3300009453 *Microbiome Permanent Draft Host-associated microbial communities of aphids from plants in several locations around USA Microbial communities of aphids from Cornus sp. in New Haven, CT, USA - Anoecia fulviabdominalis seqcov University of Texas, Austin 3300009453 Metagenome Analysis CLC Genomics released per JGI data release policy Yes Yes becky.chong@utexas.edu Rebecca Chong No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Cornus 41.25787 -72.991324 99904734 56881 4 1 2 1 0.0 Metagenome 3300056856 *Microbiome Permanent Draft Mealworm larvae gut microbial communities from Newark, Delaware, USA Mealworm larvae gut microbial communities from Newark, Delaware, USA - Gut-D30_PP (version 2) DOE Joint Genome Institute (JGI) 3300056856 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes blenner@udel.edu Mark Blenner No Host-associated Arthropoda: Insects Gut Larva Unclassified Mealworm larvae gut 39.663708 -75.755838 245787191 225133 263 15 281 13 Unrestricted 0.0 Metagenome 3300003767 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_10/4/2010_ DNA DOE Joint Genome Institute (JGI) 3300003767 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 134049793 230098 185 12 276 25 SRX2714332 Unrestricted 0.0 Metagenome 2022920003 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP5 Bath Lake Vista Annex DOE Joint Genome Institute (JGI) 2022920003 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23761787 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.96507 -110.71215 6.2 31324257 50616 471 0 23 0 Unrestricted 0.0 Metagenome 3300049310 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA20 DOE Joint Genome Institute (JGI) 3300049310 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 323985848 854240 410 4 754 15 Unrestricted 7.23 Metagenome 3300010045 *Microbiome Permanent Draft Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61 DOE Joint Genome Institute (JGI) 3300010045 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes klgravuer@ucdavis.edu Kelly Gravuer No Environmental Terrestrial Grasslands Soil Unclassified Serpentine soil 38.8712 -122.4276 2748344179 6080799 2204 32 3789 52 SRX2525424 Unrestricted 0.0 Metagenome 3300041569 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_168 MetaG AgResearch, New Zealand, Mosgeil 3300041569 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1255679641 2604177 360 26 1052 41 0.0 Metagenome 3300008334 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765560005 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008334 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 107676363 178311 92 0 87 0 0.0 Metagenome 3300065665 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume viral communities from Gulf of California, Mexico - CTD-FK190211-01-2006m-0.03 v DOE Joint Genome Institute (JGI) 3300065665 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 27.00134 -111.41153 418510241 934365 134 11 316 25 Restricted 0.0 Metagenome 3300020574 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 26JUN2009 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020574 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 165115221 356771 134 20 233 35 SRX1987800 Unrestricted 0.0 Metagenome 3300006670 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T14 (3) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006670 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 65461916 120455 81 0 122 0 0.0 Metagenome 3300005281 *Microbiome Draft Rice-straw enriched compost microbial community from Berkeley Thermophilic microbial communities from the Joint Bioenergy Institute, California, USA of rice/straw/compost enrichment - eDNA_2 v2 (version 2) DOE Joint Genome Institute (JGI) 3300005281 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes jikhudyakov@lbl.gov, apreddy@ucdavis.edu Jane Khudyakov, Amitha Reddy Yes 24205054 Engineered Solid waste Composting Grass Bioreactor Rice-straw enriched compost 38.5402727 -121.7500776 417494827 663338 328 88 446 155 Unrestricted 0.0 Metagenome 3300039309 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P6_D5 DOE Joint Genome Institute (JGI) 3300039309 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 716549764 964695 177 12 240 19 SRX9635429 Unrestricted 34.36 Metagenome 3300065618 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 806 in Chinook, Alberta, Canada - S00JY_0327 Microbiome Insights 3300065618 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.26457862 -110.5952179 70625628 106469 40 0 70 2 0.0 Metagenome 3300009874 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Sea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC1T Shell Corporation 3300009874 Metagenome Analysis idba_ud Released on PI's request No Yes nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis No Environmental Aquatic Cold seeps Marine Sediment Sediment 27.4 -93.2 1610932695 5795675 1827 9 3417 35 0.0 Metagenome 3300035085 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 DOE Joint Genome Institute (JGI) 3300035085 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 39.6589 -79.9058 704015918 1972451 811 63 1406 89 SRX8288961 Unrestricted 6.68 Metagenome 3300060418 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210602_06_01 DOE Joint Genome Institute (JGI) 3300060418 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 594451959 944119 279 88 353 110 Unrestricted 29.57 Metagenome 3300007083 *Microbiome Permanent Draft Cephalotes ants gut microbiomes Ant gut microbial communities from Cephalotes persimilis, Brazil Harvard University 3300007083 Metagenome Analysis IDBA-UD released by Yi Hu Yes Yes pl356@drexel.edu, yihu.bnu@gmail.com Piotr Lukasik, Yi Hu No Host-associated Arthropoda: Insects Gut Digestive system Unclassified ant gut -19.11 -48.24 106009309 209078 28 1 56 1 0.0 Metagenome 3300026132 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_D2_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026132 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Soil 37.4973 -122.1295 188857866 377205 212 4 364 2 SRX3203253 Unrestricted 0.0 Metagenome 3300013780 *Microbiome Permanent Draft Marine Prochlorococcus and Synechococcus communites from Sargasso sea and California currents Marine microbial communites from Sargasso Sea - Prochlorococcus B258 80m rep 2 UCI 3300013780 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 3656953 10025 1 0 2 0 SRX379259 0.0 Metagenome 3300030306 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from healthy individual in Toronto, Canada - MG100160 University of Michigan 3300030306 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 43.65 -79.38 14593491 31607 43 0 77 0 0.0 Metagenome 3300035173 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 1_4.5_N_12_1 DOE Joint Genome Institute (JGI) 3300035173 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1866 -2.2146 1565042251 3579665 505 3 855 8 SRX8232505 Unrestricted 8.5 Metagenome 3300018418 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300018418 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1847372468 4000569 1381 115 2222 197 SRX4071580 Unrestricted 14.44 Metagenome 3300055539 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.19W.11 SIP fraction DOE Joint Genome Institute (JGI) 3300055539 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 159433348 283647 112 20 194 39 Unrestricted 18.82 Metagenome 3300005152 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F06 DOE Joint Genome Institute (JGI) 3300005152 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 49456124 71803 89 0 123 0 SRX3195093 Unrestricted 0.0 Metagenome 3300041587 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Club Lake #6 DOE Joint Genome Institute (JGI) 3300041587 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5417 78.2467 93857791 150271 58 3 97 7 SRX10085951 Unrestricted 100.81 Metagenome 3300018465 *Microbiome Permanent Draft Populus soil microbial communities from riparian zone of different river systems in the western United States Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS DOE Joint Genome Institute (JGI) 3300018465 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jen.schweitzer@utk.edu Jennifer Schweitzer No Environmental Terrestrial Riparian zone Soil Unclassified soil 33.5944 -109.1397 3119252161 7564420 3366 208 5919 373 SRX3901431 Unrestricted 6.02 Metagenome 3300025190 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0326 (SPAdes) DOE Joint Genome Institute (JGI) 3300025190 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -9.12 -30.19 45328359 92817 81 19 97 26 SRX1983271 Unrestricted 0.0 Metagenome 3300003789 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE28Sep08 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003789 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 48707518 113585 51 19 107 28 SRX2565286 Unrestricted 0.0 Metagenome 3300071042 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_003-O-20190701-COMP-DNA1 3300071042 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 9224508 29957 43 9 96 25 0.0 Metagenome 3300043745 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - 1SFNV_THU_A001 DOE Joint Genome Institute (JGI) 3300043745 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.2469 -62.8454 596692964 1737731 458 1 897 4 Unrestricted 7.76 Metagenome 3300040104 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_001-M-25-38-20130709-GEN-DNA1 Argonne National Laboratory 3300040104 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 12177132 37237 45 1 84 8 ERX2134038 0.0 Metagenome 3300002154 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Marine eukaryotic phytoplankton communities from Arctic Ocean - Svalbard ARC20M.1 DOE Joint Genome Institute (JGI) 3300002154 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 78.8697 8.1122 389357413 961953 328 500 587 812 SRX1990806, SRX1990804, SRX1990805 Unrestricted 0.0 Metagenome 3300012073 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Georgia, USA - TSGA063 MetaG DOE Joint Genome Institute (JGI) 3300012073 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 32.8826 -81.9512 162876701 289552 145 61 249 125 SRX3539684 Unrestricted 0.0 Metagenome 3300037256 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_C3 DOE Joint Genome Institute (JGI) 3300037256 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 608761718 1442386 389 66 664 118 SRX8397632 Unrestricted 6.24 Metagenome 3300028194 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_10m DOE Joint Genome Institute (JGI) 3300028194 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified marine 50.0 -145.0 588165261 1189958 223 58 339 102 SRX5244193 Unrestricted 15.53 Metagenome 3300039708 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_044-M-20170627-COMP-DNA1 Battelle Memorial Institute 3300039708 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 50016319 125076 83 3 145 5 0.0 Metagenome 3300017830 *Microbiome Permanent Draft Guam Dysideidae Sponge Holobiont Metagenomes Dysideidae sponge tissue microbial communities from Pago Bay, Guam, USA - GUM007 GUM007_D2_idba_042617 University of California, San Diego, Scripps Institute of Oceanography 3300017830 Metagenome Analysis IDBA-UD v 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu; spodell@ucsd.edu Jessica Blanton; Sheila Podell Yes 28319100, 32576248 Host-associated Porifera Unclassified Sponge Unclassified sponge tissue 13.4321882 144.808083 326912810 295229 27 18 30 12 SRX2617300 0.0 Metagenome 3300055485 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.4W.6 SIP fraction DOE Joint Genome Institute (JGI) 3300055485 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 205529258 379233 66 0 142 0 Unrestricted 14.95 Metagenome 3300001274 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion v3 (version 3) DOE Joint Genome Institute (JGI) 3300001274 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 57391322 123214 58 18 112 28 Unrestricted 0.0 Metagenome 3300056977 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - APS1_3C_T0 DOE Joint Genome Institute (JGI) 3300056977 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 2388528339 3273333 799 154 997 201 Unrestricted 25.67 Metagenome 3300001493 *Microbiome Permanent Draft Human fecal microbial communities from Yokohama, Japan, from an infant Human fecal microbial communities from Yokohama, Japan, from healthy Japanese individuals - infant_stool_bacterial Baylor College of Medicine, Human Genome Sequencing Center 3300001493 Metagenome Analysis released per JGI data release policy No Yes sari.peura@jyu.fi Sari Peura No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 35.490139 139.683694 14454540 16291 12 1 21 1 0.0 Metagenome 3300044997 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Towuti Lake, South Sulawesi, Indonesia - Towuti_1m_2014 DOE Joint Genome Institute (JGI) 3300044997 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.7 121.4 522916141 955666 335 65 541 91 Unrestricted 32.51 Metagenome 3300007839 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 809635352 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007839 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 4710981 10850 5 0 9 0 0.0 Metagenome 3300004095 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE03Jun09 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300004095 Metagenome Analysis MEGAHIT v. 0.1.3-bugfix2 Released by Nikos bc they passed the 6 months embargo date Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 709814352 2105187 278 139 473 275 SRX2565338 Unrestricted 0.0 Metagenome 3300003388 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN DOE Joint Genome Institute (JGI) 3300003388 Metagenome Analysis Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 406566890 894615 246 13 443 16 SRX2565007 Unrestricted 0.0 Metagenome 3300019747 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FRT_5-6_MG DOE Joint Genome Institute (JGI) 3300019747 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 145606824 357729 269 35 524 54 SRX3982714 Unrestricted 3.74 Metagenome 3300042140 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lake Yojoa, Honduras - Yojoa_01_2020_E_hypo (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300042140 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Lake Freshwater Unclassified Freshwater 14.8744 -87.9835 1528344852 2835010 604 168 906 252 Unrestricted 11.6 Metagenome 3300006974 *Microbiome Permanent Draft Non-marine hypersaline water viral communities from Mallorca, Spain, POOL 1-2-3 virus M8 Mallorca 14 Non-marine hypersaline water viral communities from Mallorca, Spain, 2014 - Pool_3_virus M8 University of Alicante 3300006974 Metagenome Analysis Spades_3.6 released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline water 39.333 3.05 1533429 3443 19 0 6 0 0.0 Metagenome 3300015339 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12JUL2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015339 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 225650998 382252 11 142 13 256 SRX3923449 Unrestricted 7.52 Metagenome 3300026350 *Microbiome Permanent Draft Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PU6 DOE Joint Genome Institute (JGI) 3300026350 Metagenome Analysis spades v. 3.11.1 Yes Yes ccraft@indiana.edu Chris Craft No Environmental Aquatic Wetlands Freshwater Sediment sediment 31.3377 -81.4644 113461149 327391 365 10 720 22 SRX4796806 Unrestricted 6.48 Metagenome 3300027536 *Microbiome Permanent Draft Enrichment culture microbial communities from Rutgers university that are MTBE-degrading Enrichment culture microbial communities om Arthur Kill intertidal strait, New Jersey, USA, that are MTBE-degrading - MTBE-AKS2 (Arthur Kill Sulfidogenic replicate 2) MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027536 Metagenome Analysis spades v. 3.11.1 Yes Yes haggblom@rutgers.edu Max M. Haggblom No Environmental Aquatic Intertidal zone Marine Sediment Enrichment culture 40.58 -74.2 441029435 670632 220 0 317 0 SRX3195285 Unrestricted 0.0 Metagenome 3300070588 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_042-M-20200805-COMP-DNA1 Battelle Memorial Institute 3300070588 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.129092 -99.245921 5.59-6.11 12476699 40069 39 2 79 5 0.0 Metagenome 3300047478 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Orco River, San Benigno Canavese, Piedmont, Italy - orco_2019_sw_WHONDRS-S19S_0018 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047478 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 45.2476 7.8043 64224742 132708 116 17 203 14 Unrestricted 0.0 Metagenome 3300007520 *Microbiome Permanent Draft Freshwater microbial communities from lake liftoff mats and glacier meltwater in Antarctica Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (megahit assembly) DOE Joint Genome Institute (JGI) 3300007520 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes slonczewski@kenyon.edu Joan Slonczewski No Environmental Aquatic Ice Freshwater Glacier meltwater Freshwater -77.714 162.445 2174974799 3504326 578 260 813 369 SRX2753508 Unrestricted 0.0 Metagenome 7000000263 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 638754422 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000263 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2449074 3133 0 0 0 0 0.0 Metagenome 3300034627 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from Middle Island sinkhole, Lake Huron, Michigan, United States - MIS.2017.108B DOE Joint Genome Institute (JGI) 3300034627 Metagenome Analysis metaspades v. 3.13.0 Yes Yes macgregb@umn.edu; sgrim@umich.edu Barbara MacGregor; Sharon Grim No Environmental Aquatic Lake Freshwater Sediment microbial mat 45.1993 -83.3279 231703601 575199 248 33 405 54 SRX8174182 Unrestricted 11.12 Metagenome 3300012185 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ353 (21.06) DOE Joint Genome Institute (JGI) 3300012185 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.0624 163.8323 687481136 1523026 376 1 695 2 SRX3369867 Unrestricted 0.0 Metagenome 3300005330 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG DOE Joint Genome Institute (JGI) 3300005330 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 42.3948 -85.3738 4222505391 11810003 2854 156 4973 311 SRX2740817 Unrestricted 0.0 Metagenome 3300025326 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025326 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 2430898236 4804127 1360 6 2308 8 SRX1991814 Unrestricted 0.0 Metagenome 3300026105 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_A_H2O_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026105 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Pond water 37.4969 -122.1331 226621770 371511 67 8 132 15 SRX2523450 Unrestricted 0.0 Metagenome 3300018034 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10 DOE Joint Genome Institute (JGI) 3300018034 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 1411724534 2828232 800 59 1342 107 SRX3960077 Unrestricted 6.22 Metagenome 3300000345 *Microbiome Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring and microbial mat streamer communities from Octopus Spring Streamers, Yellowstone National Park, USA - T=80-84 v1 DOE Joint Genome Institute (JGI) 3300000345 Metagenome Analysis released based on JGI ITS Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson Yes 26140529 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring and microbial mat 44.5340836 -110.7978895 7.8 49094763 110064 33 1 39 1 Unrestricted 0.0 Metagenome 3300020701 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 09SEP2008 hypolimnion DOE Joint Genome Institute (JGI) 3300020701 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 84540196 170533 101 10 141 13 Unrestricted 0.0 Metagenome 3300010279 *Microbiome Permanent Draft Animal gut microbial communities from fecal samples from Wisconsin, USA Orangutan group fecal microbial communities from fecal samples from Wisconsin, USA - O1105 metagenome DOE Joint Genome Institute (JGI) 3300010279 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes apneumann2@wisc.edu Anthony Neumann No Host-associated Mammals Large intestine Digestive system Fecal Orangutan group fecal 43.07 -89.4 253261968 429622 756 0 1168 0 SRX2506123 Unrestricted 0.0 Metagenome 3300029262 *Microbiome Permanent Draft ACE Virus Marine viral community from the Austral Polar Province, Southern Ocean - ACE 070VD University of Michigan 3300029262 Metagenome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes duhaimem@umich.edu Melissa Duhaime No Environmental Aquatic Unclassified Marine Unclassified Marine -67.0928 145.0131 120663393 182602 107 63 125 123 0.0 Metagenome 3300039000 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A10_65_0.25M University of Tennessee 3300039000 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 169117007 404792 142 8 316 17 SRX710582 0.0 Metagenome 3300050512 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation DOE Joint Genome Institute (JGI) 3300050512 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Host-associated Plants Rhizosphere Roots Soil Populus rhizosphere 35.8444 -83.9599 3942728329 8584931 1858 68 3409 98 SRX2923911 0.0 Metagenome 3300070662 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_037-O-20190717-COMP-DNA1 3300070662 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 7198307 21648 40 2 66 9 0.0 Metagenome 3300046396 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA068b-BCH DOE Joint Genome Institute (JGI) 3300046396 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6792 -83.4776 641533275 1571190 398 41 759 70 Unrestricted 8.02 Metagenome 3300005883 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_302 DOE Joint Genome Institute (JGI) 3300005883 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 201285739 728280 404 12 789 24 SRX2564942, SRX2581050 Unrestricted 0.0 Metagenome 3300045071 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - WIN10-9-12-19 DOE Joint Genome Institute (JGI) 3300045071 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.4402 -120.5397 285562483 744192 413 33 716 65 Restricted 7.34 Metagenome 7000000609 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 765094712 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000609 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 95534833 143217 0 0 0 0 0.0 Metagenome 3300027600 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepA_8h DOE Joint Genome Institute (JGI) 3300027600 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 178771164 338918 117 9 159 12 SRX5245240 Unrestricted 18.42 Metagenome 3300001298 *Microbiome Permanent Draft Permafrost soil microbial communities from Miers Valley, Antarctica Permafrost soil microbial communities from Miers Valley, Antarctica - Ant1 3300001298 Metagenome Analysis released by JGI data releasing policy No Yes kirill.krivushin@utoronto.ca Kirill Krivushin No Environmental Terrestrial Unclassified Soil Permafrost Permafrost soil -78.099535 163.850256 53594645 248720 186 10 297 16 0.0 Metagenome 3300029775 *Microbiome Permanent Draft Liquor fermentation pit mud microbial communities from Chongqing University, China Liquor fermentation pit mud microbial communities from Luzhou, China - Meta-4-1-220-B Chongqing University 3300029775 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Engineered Bioreactor Unclassified Unclassified Unclassified Fermentation pit mud 28.88 105.45 195018578 272446 117 0 189 0 SRX691272 0.0 Metagenome 3300009988 *Microbiome Permanent Draft Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_233 metaG DOE Joint Genome Institute (JGI) 3300009988 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes esinger@lbl.gov; twoyke@lbl.gov Esther Singer; Tanja Woyke No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 30.387 -97.7301 40344473 88077 62 8 111 17 SRX4807286 Unrestricted 0.0 Metagenome 3300049019 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - A9_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049019 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 390858047 882779 565 14 1062 20 Unrestricted 0.0 Metagenome 3300032130 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 34915 DOE Joint Genome Institute (JGI) 3300032130 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.7468 -122.0193 1140326219 2714612 841 185 1382 342 SRX6423973 Unrestricted 16.55 Metagenome 3300043614 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 154-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043614 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9828 -107.0097 402173014 1170170 468 15 922 19 Unrestricted 6.27 Metagenome 3300028178 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_36m DOE Joint Genome Institute (JGI) 3300028178 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 380773642 765469 363 20 561 40 SRX5244742 Unrestricted 10.52 Metagenome 3300000270 *Microbiome Permanent Draft Marine microbial communities from the Comau fjord, Huinay, Region de Los Lagos, Chile Marine microbial mat from the Comau fjord, Huinay, Chile. Sample sequenced in March 2012 OMICS Solution 3300000270 Metagenome Analysis released per JGI data release policy No Yes jugalde@ucsd.edu Juan Ugalde No Environmental Aquatic Intertidal zone Marine Microbialites Marine -42.021639 -72.689161 21715148 40887 95 0 141 0 0.0 Metagenome 3300009491 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS851 no min length Marine Biological Laboratory 3300009491 Metagenome Analysis Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow diffuse flow hydrothermal vent 18.547192 -81.71817 6.98 267671278 1313040 123 16 354 43 0.0 Metagenome 3300013716 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01023 Weill Cornell Medical College 3300013716 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.84 20515532 33602 22 0 20 1 SRX822985 0.0 Metagenome 3300057020 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Wyoming, USA - M_H2_S1 DOE Joint Genome Institute (JGI) 3300057020 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 41.11092 -106.14991 1583564629 2346942 349 144 498 168 Unrestricted 53.38 Metagenome 7000000468 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit number 3 of subject 159753524 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000468 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 10827440 18076 0 0 0 0 0.0 Metagenome 3300047273 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from St. Lawrence River, NewYork, USA - NASQAN2014_144 DOE Joint Genome Institute (JGI) 3300047273 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 546980801 1041873 217 24 404 51 Unrestricted 23.36 Metagenome 3300023268 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L106-311C-6 DOE Joint Genome Institute (JGI) 3300023268 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 367144609 848448 524 68 1008 127 SRX4799649 Unrestricted 9.65 Metagenome 3300038350 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Indian Ocean - SGH2 Michigan State University 3300038350 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 1.26600833 103.8333333 34084022 101198 0 5 0 5 0.0 Metagenome 3300011957 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00597 Weill Cornell Medical College 3300011957 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.97 44730669 63793 14 0 20 0 SRX822564 0.0 Metagenome 3300047494 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Southern Region, Iceland - Sphagnum auriculatum 3_AUR_ICE DOE Joint Genome Institute (JGI) 3300047494 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.1137 -20.496 1455369737 2347376 578 123 819 193 SRX14786510 Unrestricted 9.84 Metagenome 3300039184 *Microbiome Permanent Draft Organic and conventional farm associated microbial communities from Canada and USA Wastewater microbial communities from conventional feedlot in Alberta, Canada - WW122 Colorado State University 3300039184 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 50.34 -113.77 220460251 427566 261 0 467 0 0.0 Metagenome 3300022653 *Microbiome Permanent Draft Thermokarst lakes Summer vs Winter Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Winter W1 Laval University 3300022653 Metagenome Analysis IDBA-UD 1.1 released by Adrien Vigneron No Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 55.1491 -77.4866 294442002 707130 354 3 643 6 0.0 Metagenome 3300011665 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00525 Weill Cornell Medical College 3300011665 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.68 -73.97 35354369 48127 19 0 30 0 SRX822494 0.0 Metagenome 3300048508 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_120627.NP1 DOE Joint Genome Institute (JGI) 3300048508 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 556628694 1237976 458 38 633 79 Unrestricted 14.67 Metagenome 3300034983 *Microbiome Permanent Draft Extreme environments viral communities from various locations Sediment microbial communities from Lake Vrana, Zadar, Croatia - 6 bact DOE Joint Genome Institute (JGI) 3300034983 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Lake Freshwater Sediment sediment 43.9359 15.5428 306723943 698144 212 1 386 5 SRX8201732 Unrestricted 22.54 Metagenome 3300006481 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0025m University of Hawaii 3300006481 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 457559942 1058234 528 32 752 67 0.0 Metagenome 3300023215 *Microbiome Permanent Draft Deep ocean water column microbial communities from Yap Trench, western Pacific Ocean Seawater microbial communities from Yap Trench, western Pacific Ocean - 37I-Yap-CTD02-6000m Third Institute of Oceanography, State Oceanic Administration 3300023215 Metagenome Analysis idba v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Abyssopelagic Marine Unclassified seawater 9.87 138.5 699474835 1349033 371 8 664 10 0.0 Metagenome 3300011618 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00348 Weill Cornell Medical College 3300011618 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway 40.62 -74.07 27077725 41486 21 0 20 0 SRX822320 0.0 Metagenome 3300006998 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T18 (3) (BES), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006998 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 31393196 63949 49 0 45 1 0.0 Metagenome 3300021125 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 11AUG2009 epilimnion DOE Joint Genome Institute (JGI) 3300021125 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 76372393 173994 89 26 145 34 Unrestricted 0.0 Metagenome 3300003982 *Microbiome Permanent Draft Evaporitic Gypsum dome microbial communities from Salar de Llamara, Chile Evaporitic Gypsum dome microbial communities from Salar de Lamara, Chile - Llamara2_evaporite INDEAR Instituto de Agrobiotecnologia Rosario 3300003982 Metagenome Analysis Unknown released per JGI data release policy No Yes dgkurt@gmail.com Daniel Kurth No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Sediment Hypersaline sediment -21.2696 -69.6303 8 0 0 0 0 0 0 0.0 Metagenome 7000000415 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 763961826 replicate 1 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000415 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 5088959 11353 0 0 0 0 SRX024915 0.0 Metagenome 3300005993 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 DOE Joint Genome Institute (JGI) 3300005993 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Prmafrost soil 68.6139 -149.3145 1129526627 3255365 683 47 1247 90 SRX2739145 Unrestricted 0.0 Metagenome 3300002638 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G05K3-12 DOE Joint Genome Institute (JGI) 3300002638 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 1271369 4143 47 2 75 9 SRX1991295 Unrestricted 0.0 Metagenome 3300045156 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_1_B DOE Joint Genome Institute (JGI) 3300045156 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 150909697 171343 100 1 97 2 Unrestricted 124.98 Metagenome 3300014576 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -PQiagenBeadWash928-10 Weill Cornell Medical College 3300014576 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.96 8890306 8448 2 0 4 0 SRX823465 0.0 Metagenome 3300019082 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40 DOE Joint Genome Institute (JGI) 3300019082 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 762974342 1386341 406 4 716 15 SRX3959983 Unrestricted 20.03 Metagenome 3300047625 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA098-TGU DOE Joint Genome Institute (JGI) 3300047625 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6772 -83.4783 740981848 1731249 323 24 593 52 Unrestricted 9.01 Metagenome 3300009898 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA15 University of New South Wales 3300009898 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au; z5119396@unsw.edu.au Holly Bennett; Viet Hung Nguyen No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 49194318 66919 35 0 42 1 0.0 Metagenome 3300031593 *Microbiome Permanent Draft Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP2 DOE Joint Genome Institute (JGI) 3300031593 Metagenome Analysis spades v. 3.12.0 Yes Yes rlsimister@gmail.com Rachel Simister No Environmental Aquatic Lake Freshwater Sediment sediment -2.7726 121.4938 535834901 1102393 528 0 915 1 SRX6422637 Unrestricted 12.82 Metagenome 3300002373 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 29OCT2010 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002373 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 16637235 44806 55 21 110 28 SRX1989296 Unrestricted 0.0 Metagenome 3300040788 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Etang de Berre, Marignane, France - D304 Genopole Toulouse Midi-Pyrenees 3300040788 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.4847 5.188 328306564 523295 206 22 361 45 0.0 Metagenome 3300020598 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched backyard soil microbial communities from Emeryville, California, USA - eDNA 3rd pass 37_C Kraft BY (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300020598 Metagenome Analysis spades v. 3.10.1 Yes Yes JMGladden@lbl.gov John Gladden No Environmental Terrestrial Unclassified Soil Unclassified soil 37.83 -122.29 304073422 501610 160 7 209 14 SRX4062787, SRX4062786 Unrestricted 0.0 Metagenome 3300010312 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1549B-02 DOE Joint Genome Institute (JGI) 3300010312 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2322 -123.8817 383242287 795600 393 22 588 38 SRX2523443 Unrestricted 0.0 Metagenome 3300021570 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - E2014-0112-100LTR Downsampled Assembly University of Michigan 3300021570 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified freshwater lake 41.76325 -83.332367 2251245 4876 3 5 5 9 0.0 Metagenome 3300013556 *Microbiome Permanent Draft Assembled human viral communities from clinical and cell-culture passaged samples from San Francisco, USA Assembled human viral communities from clinical and cell-culture passaged samples from San Francisco, USA - NIBSC_BSRI Blood Systems Research Institute (BSRI) 3300013556 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Assembled human 37.77 -122.44 1121952 2677 16 3 21 4 SRX810507 0.0 Metagenome 3300025361 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica - Antarctic Deep Lake Metagenome 02WF4 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025361 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5627 78.1882 116932782 192968 84 2 122 2 SRX2746570 Unrestricted 0.0 Metagenome 3300011876 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00538 Weill Cornell Medical College 3300011876 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.69 -73.98 54504556 73812 27 0 45 0 SRX822505 0.0 Metagenome 3300027224 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1449C-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027224 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2327 -123.9168 163316631 356394 152 13 273 10 SRX2753619 Unrestricted 0.0 Metagenome 3300008146 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 604812005 SPADES reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008146 Metagenome Analysis SPADES v3.7.0 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 293734214 994556 278 15 413 32 0.0 Metagenome 3300005039 *Microbiome Permanent Draft Marine and wastewater microbial communities from Korea, with extracellular vesicles Wastewater microbial communities from Nanji, Korea with extracellular vesicles - Nanji-3um Chunlab, Inc 3300005039 Metagenome Analysis IDBA-1.1.1 released per JGI data release policy No Yes s-jkim@kiost.ac Sang-Jin Kim No Engineered Wastewater Unclassified Unclassified Unclassified Wastewater 37.3132 126.828 140889442 308946 334 0 505 5 0.0 Metagenome 3300003892 *Microbiome Permanent Draft Hot spring sediment microbial communities from Chocolate Pots, Yellowstone National Park, Wyoming that are Fe(III) reducing Hot spring sediment microbial communities from Chocolate Pots, Yellowstone National Park, Wyoming that are Fe(III) reducing - CP Core 2, 1cm University of Wisconsin, Madison 3300003892 Metagenome Analysis CLC Genomics Workbench released per JGI data release policy Yes Yes bconverse@wisc.edu Brandon Converse No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.427936 -110.588466 322090064 626914 299 6 484 10 0.0 Metagenome 3300013088 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_200m DOE Joint Genome Institute (JGI) 3300013088 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; shallam@interchange.ubc.ca; jkjarett@lbl.gov Ramunas Stepanauskas; Steven Hallam; Jessica Jarett No Environmental Aquatic Lake Freshwater Unclassified freshwater 50.0621 -124.7214 507859548 1093176 583 4 1091 6 SRX3570957 Unrestricted 7.29 Metagenome 2228664013 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Tailings pond microbial communities from Northern Alberta -TP6_2010 McGill University 2228664013 Metagenome Analysis No Yes scaffrey@genomealberta.ca, scaffrey@genomealberta.ca; pfdunfie@ucalgary.ca Sean M Caffrey, Sean Caffrey; Peter Dunfield No Engineered Built environment Petrochemical Tailings pond Unclassified Hydrocarbon resource environments 57.02 -111.55 103823675 293251 126 0 232 0 0.0 Metagenome 3300070723 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Mountain Lake Biological Station, Virginia, USA - MLBS_002-M-20180612-COMP-DNA1 3300070723 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 42429366 121988 46 4 139 6 0.0 Metagenome 3300037420 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from bulk soil in EcoFAB chamber, Walnut Creek, California, United States - Soil-Control_B SG_14 DOE Joint Genome Institute (JGI) 3300037420 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9315 -122.0212 2565063328 4119470 840 72 1244 100 Unrestricted 18.61 Metagenome 3300028581 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_17m DOE Joint Genome Institute (JGI) 3300028581 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater 39.9879 -1.8737 1394129784 2467864 922 74 1415 94 SRX5249020 Unrestricted 23.6 Metagenome 3300027904 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Cubitermes ugandensis P3 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027904 Metagenome Analysis spades v. 3.11.1 Yes Yes brune@mpi-marburg.mpg.de Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 0.2917 34.856 3119447669 5549646 1718 37 3181 51 SRX3315489, SRX3315490 Unrestricted 0.0 Metagenome 3300048791 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 S1 30-34 DOE Joint Genome Institute (JGI) 3300048791 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.0474 442416490 564481 102 0 130 0 Restricted 24.0 Metagenome 3300026059 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleA_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026059 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.224476 -122.019341 92770840 239250 183 3 356 2 SRX7188132 Unrestricted 0.0 Metagenome 3300027442 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G07K5-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300027442 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 12926369 42356 48 2 116 5 SRX1991312 Unrestricted 0.0 Metagenome 7000000147 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763961826 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000147 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 67403126 123961 0 0 0 0 0.0 Metagenome 3300051659 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Sankt Oswald-Riedlhutte, Bavaria, Germany - BW_CO_009D DOE Joint Genome Institute (JGI) 3300051659 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.93167 13.427611 1221743656 2797213 432 51 828 89 Unrestricted 9.16 Metagenome 3300000728 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 11 DOE Joint Genome Institute (JGI) 3300000728 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 28987603 76831 72 0 143 0 SRX4338610 Unrestricted 0.0 Metagenome 3300025874 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic Microbial community sample from North Sea - COGITO 998_met_04 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025874 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Pelagic marine 54.184167 7.9 828814086 1457732 387 63 643 100 SRX802202 Unrestricted 0.0 Metagenome 3300012903 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1 DOE Joint Genome Institute (JGI) 3300012903 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 697603136 1749112 699 49 1285 103 SRX3297421 Unrestricted 4.0 Metagenome 3300059836 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.1W.12 SIP fraction DOE Joint Genome Institute (JGI) 3300059836 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 413740075 764898 297 60 474 102 Unrestricted 0.0 Metagenome 3300021488 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-2-3_MG DOE Joint Genome Institute (JGI) 3300021488 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.0114 -110.5931 116921597 241508 97 1 162 0 SRX3982108 Unrestricted 25.65 Metagenome 3300022560 *Microbiome Permanent Draft Subsurface microbial diversity of groundwater of Koyna-Warna region, Deccan traps, Panchgani, Maharashtra, India Groundwater microbial community from Koyna-Warna region, Deccan traps, Karad, Maharastra, India - BGRL K99 Indian Institute of Technology, kharagpur 3300022560 Metagenome Analysis Spades v. 3.10 released by JGI data releasing policy No Yes sarpinaki@gmail.com; sarpinaki@yahoo.com Dr PINAKI SAR; Pinaki Sar No Environmental Aquatic Groundwater Freshwater Aquifer Groundwater 17.297778 74.128333 38893240 61240 21 0 30 1 0.0 Metagenome 3300041808 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - A_33_wk_4 DOE Joint Genome Institute (JGI) 3300041808 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9753 -106.978 76997908 254754 222 13 396 32 SRX14808477 Unrestricted 6.4 Metagenome 3300006180 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_virus_MetaG DOE Joint Genome Institute (JGI) 3300006180 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes binskeep@montana.edu William Inskeep, William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.7315 -110.7113 62427905 200083 41 1 78 4 SRX2917381 Unrestricted 0.0 Metagenome 3300022872 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25 DOE Joint Genome Institute (JGI) 3300022872 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 216003821 422669 145 16 203 34 SRX4415309, SRX7705661 Unrestricted 0.0 Metagenome 3300047649 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BT04-01_D100 (version 2) DOE Joint Genome Institute (JGI) 3300047649 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3555 19.0492 209300698 323880 118 34 158 48 Restricted 0.0 Metagenome 3300001024 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN391 DOE Joint Genome Institute (JGI) 3300001024 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Soil 44.20517707 -122.1284473 284044 869 22 0 31 0 SRX1986737 Unrestricted 0.0 Metagenome 3300024178 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK35 DOE Joint Genome Institute (JGI) 3300024178 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 115253941 275526 200 21 351 38 SRX4547587 Unrestricted 9.48 Metagenome 3300012223 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway missing -P00795 Weill Cornell Medical College 3300012223 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Unclassified City subway 40.83 -73.92 13652279 23137 8 0 10 0 SRX822761 0.0 Metagenome 3300001363 *Microbiome Permanent Draft Kakapo fecal microbial communities from Codfish Island, New Zealand Kakapo fecal microbial communities from Codfish Island, New Zealand - Kakapo Adult4 New Zealand Genomics Limited 3300001363 Metagenome Analysis released per JGI data release policy No Yes dwai012@aucklanduni.ac.nz, d.waite1986@gmail.com David Waite No Host-associated Birds Large intestine Digestive system Fecal Kakapo fecal -46.77 167.63 299066391 1275815 5805 9 11200 48 0.0 Metagenome 3300070681 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_004-M-20190830-COMP-DNA1 3300070681 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 9144569 28932 48 4 82 6 0.0 Metagenome 3300044508 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - AT2-9-26-19 DOE Joint Genome Institute (JGI) 3300044508 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.3388 -120.7055 623183166 1375837 587 36 988 48 Restricted 7.45 Metagenome 3300029152 *Microbiome Permanent Draft Infant fecal microbial communities from Pittsburgh, USA Infant fecal microbial communities from Pittsburgh, USA - NECEvent2014_4_3 Banfield Lab, University of California, Berkeley 3300029152 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant fecal 40.4308 -79.9598 18968140 21332 45 0 49 0 0.0 Metagenome 3300032431 *Microbiome Permanent Draft Freshwater microbial communities from lake liftoff mats and glacier meltwater in Antarctica Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-02 (spades assembly) (version 2) DOE Joint Genome Institute (JGI) 3300032431 Metagenome Analysis spades v. 3.13.0 Yes Yes slonczewski@kenyon.edu Joan Slonczewski No Environmental Aquatic Ice Freshwater Liftoff microbial mat Freshwater -77.605 163.163 1569321533 3122612 615 26 775 47 SRX2753509 Unrestricted 34.58 Metagenome 3300013804 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - sediment SCG75 University of British Columbia 3300013804 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Sediment Marine 239177 746 1 0 2 0 SRX143184 0.0 Metagenome 3300009190 *Microbiome Permanent Draft Estuarine microbial communities from Mobile Bay, Alabama Estuarine microbial communities from Mobile Bay, Alabama - WINL Auburn University 3300009190 Metagenome Analysis CLC 9 De novo released per JGI data release policy No Yes mossant@auburn.edu Anthony Moss No Environmental Aquatic Intertidal zone Marine Estuary Aquatic, Marine 30.4464641 -87.9922684 3011 12 0 0 0 1 0.0 Metagenome 3300035683 *Microbiome Permanent Draft Biological soil crust microbial communities from Mojave Desert, California, United States Biological soil crust microbial communities from Mojave Desert, California, United States - CLC_S2 DOE Joint Genome Institute (JGI) 3300035683 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erik@olemiss.edu Erik Hom No Environmental Terrestrial Soil crust Soil Biological soil crust 34.1733 -115.3858 1913868627 3918519 1398 38 2305 48 SRX8380274 Unrestricted 11.14 Metagenome 3300006004 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA- GW-RW T4_22-July-14 DOE Joint Genome Institute (JGI) 3300006004 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 95813128 336827 277 66 544 92 SRX2838884 Unrestricted 0.0 Metagenome 3300007959 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Enriched soil microbial communities from Old Woman Creek wetland in Ohio, USA - Methanotroph_Enrichment_5 DOE Joint Genome Institute (JGI) 3300007959 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified Enriched soil 40.178 -81.073 365700917 584887 343 6 536 6 SRX2752460 Unrestricted 0.0 Metagenome 7000000374 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159632143 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000374 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 84348203 160006 0 0 0 0 0.0 Metagenome 3300026291 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026291 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Soil 68.6135 -149.3144 592747707 1327346 366 24 575 41 SRX2739344 Unrestricted 0.0 Metagenome 3300003961 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Enrichment cultures from Harmful Algal Blooms in Lake Erie HABS-00-38966 University of Michigan 3300003961 Metagenome Analysis IDBA-UD v1.1.1 released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lentic Freshwater Unclassified Freshwater -77.611214 163.119356 34427691 40314 15 1 22 1 0.0 Metagenome 3300057012 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M1L_18_20 DOE Joint Genome Institute (JGI) 3300057012 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0036317 -81.5659748 1052477941 1759501 566 3 1005 3 Unrestricted 13.34 Metagenome 3300017950 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300017950 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1531531251 3438438 1092 73 2116 107 SRX4081052 Unrestricted 20.78 Metagenome 3300026627 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C host_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026627 Metagenome Analysis spades v. 3.11.1 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.7219 -110.7021 65857878 106218 27 0 28 0 SRX2917370 Unrestricted 0.0 Metagenome 3300006462 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2 of subject 159207311 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006462 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 114144899 160720 76 0 97 0 0.0 Metagenome 3300038983 *Microbiome Permanent Draft Bacterial communities from sewage treatment works near Birtley, UK Wastewater bacterial communities from sewage treatment works near Birtley, UK - 02 4M Northumbria University 3300038983 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes martin.spurr@newcastle.ac.uk Martin Spurr No Engineered WWTP Unclassified Wastewater Unclassified wastewater 54.903212 -1.595078 40718159 69557 92 2 133 2 0.0 Metagenome 2189573026 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Marine microbial communities from Columbia River, CM, sample from Cape Meares, GS311-FOS-0p8-Deep1200 University of South Carolina 2189573026 Metagenome Analysis released per JGI data release policy No Yes mariyasmit@hotmail.com Mariya Smit, Mariya W. Smit No Environmental Aquatic Intertidal zone Marine Unclassified Marine estuarine 45.483 -124.918 33775157 71488 38 1 75 0 0.0 Metagenome 3300045823 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_3_C DOE Joint Genome Institute (JGI) 3300045823 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 161362941 190187 104 1 103 1 Unrestricted 126.76 Metagenome 3300027577 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027577 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380143 -119.2723688 332938473 775100 255 0 447 0 SRX2522697 Unrestricted 0.0 Metagenome 3300010320 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015 DOE Joint Genome Institute (JGI) 3300010320 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 762557950 1772643 447 25 944 44 SRX2526321 Unrestricted 0.0 Metagenome 3300037121 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10SB15 DOE Joint Genome Institute (JGI) 3300037121 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 412832222 1122957 644 60 1100 80 SRX8378994 Unrestricted 5.24 Metagenome 3300019753 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLC_6-7_MG DOE Joint Genome Institute (JGI) 3300019753 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 191105309 455043 283 35 491 80 SRX3983490 Unrestricted 3.98 Metagenome 3300049928 *Microbiome Permanent Draft Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA - 3_s_apr_JRBCZO DOE Joint Genome Institute (JGI) 3300049928 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dawsonfairbanks@email.arizona.edu Dawson Fairbanks No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.882743 -105.537439 500190666 877095 225 14 394 21 Unrestricted 16.03 Metagenome 3300070807 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_047-M-20200721-COMP-DNA1 3300070807 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 5684492 18916 46 2 87 9 0.0 Metagenome 3300033692 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from gas well in Marcellus Shale, West Virginia, United States - MIP3H_06082016 Ohio State University 3300033692 Metagenome Analysis IDBA-UD v. 1.1.1 No Yes rebdaly@colostate.edu Rebecca Daly No Environmental Terrestrial Fracking water Deep subsurface Unclassified Fracking Water 39.6017 -79.9761 11059090 11481 2 0 2 0 0.0 Metagenome 3300000329 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM172 Beijing Genomics Institute (BGI), Macrogen 3300000329 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 124001699 283360 701 1 1156 2 0.0 Metagenome 3300025382 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH22Jun08 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025382 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 120658997 270946 69 12 111 37 SRX2565423 Unrestricted 0.0 Metagenome 3300036407 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Aphanothece sp. CMT-3BRIN-NPC111 and co-occurring heterotrophs from soil crust from Clark Mountains Wilderness, California, United States - 20190225_6 DOE Joint Genome Institute (JGI) 3300036407 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Soil crust Soil Biological Soil crust 35.5039 -115.6922 46297897 54986 19 0 20 0 SRX8847168 Unrestricted 253.62 Metagenome 3300017654 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG DOE Joint Genome Institute (JGI) 3300017654 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 575600400 1287044 404 14 753 39 SRX3047920 Unrestricted 5.29 Metagenome 3300049208 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - J25_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049208 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 113457269 251091 199 14 337 23 Unrestricted 0.0 Metagenome 3300004693 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA7.5M (version 2) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300004693 Metagenome Analysis MEGAHIT v0.2.0 Yes Yes tmcmahon@engr.wisc.edu, tmcmahon@engr.wisc.edu; shaomei.he@gmail.com Katherine McMahon, Katherine McMahon; Shaomei He No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 316843893 954940 544 16 1123 27 SRX2565137 Unrestricted 0.0 Metagenome 3300003133 *Microbiome Permanent Draft Sea squirt microbial communities from various locations Lissoclinum patella microbial communities from Fiji - P2 3300003133 Metagenome Analysis Celera assembler v. July 2009 Made public because these are downloaded from Genbank No Yes ews1@utah.edu Eric Schmidt Yes 22123943 Host-associated Tunicates Unclassified Ascidians Unclassified Sea squirt -16.872044 177.80811 23834631 37986 7 1 6 5 0.0 Metagenome 3300004146 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleB_D2 DOE Joint Genome Institute (JGI) 3300004146 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.224476 -122.019341 653422062 2078583 796 9 1872 13 SRX7143105 Unrestricted 0.0 Metagenome 3300029330 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 009_6_3_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029330 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 196145360 239174 151 0 230 1 0.0 Metagenome 3300060395 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210615_19_09 DOE Joint Genome Institute (JGI) 3300060395 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 155778293 246611 94 41 122 71 Unrestricted 45.99 Metagenome 3300027098 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius geniculatus LIZARD ISLAND.2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027098 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 468028808 389267 5 2 12 1 SRX2712094 Unrestricted 0.0 Metagenome 3300034132 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 11HMC DOE Joint Genome Institute (JGI) 3300034132 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological hypolithic biocrust 34.7856 -115.66 327758664 836876 571 31 1135 54 SRX7615460 Unrestricted 8.62 Metagenome 3300009326 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 900m, 2.7-0.2um, replicate a Georgia Genomics Facility 3300009326 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 392104434 474413 187 0 253 0 0.0 Metagenome 3300069579 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Environmental Research Center, Mid-Atlantic, MD, USA - SERC_049-M-20170711-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069579 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89008 -76.56001 4928158 16062 32 3 65 6 0.0 Metagenome 3300050175 *Microbiome Permanent Draft Marine sediment microbial communities from Pacific Ocean, California, USA Marine sediment microbial communities from Pacific Ocean, California, USA - SDPL21_R2 DOE Joint Genome Institute (JGI) 3300050175 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pjensen@ucsd.edu Paul r. Jensen No Environmental Aquatic Intertidal zone Marine Sediment Marine sediment 32.66 -117.24 1020387087 1749927 384 17 659 23 Unrestricted 15.64 Metagenome 3300028870 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_4 DOE Joint Genome Institute (JGI) 3300028870 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 841545233 2091215 357 23 525 43 SRX5356656 Unrestricted 0.0 Metagenome 3300043202 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_2 (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043202 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 196549296 336436 71 2 110 5 SRX9140447 Unrestricted 83.97 Metagenome 3300069441 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_053-M-20160721-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069441 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 3320072 10982 21 5 40 7 0.0 Metagenome 3300012675 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT333_2 DOE Joint Genome Institute (JGI) 3300012675 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9226 -106.9518 125585938 297847 207 7 430 15 SRX3368783 Unrestricted 0.0 Metagenome 3300056771 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB28 DOE Joint Genome Institute (JGI) 3300056771 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 23311016 57558 114 5 221 5 Restricted 36.75 Metagenome 3300028562 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_3 DOE Joint Genome Institute (JGI) 3300028562 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 635275259 1374317 170 10 252 25 SRX5281068 Unrestricted 0.0 Metagenome 3300044791 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - I_P72_A150 DOE Joint Genome Institute (JGI) 3300044791 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Pasture Soil Agricultural land Soil -10.1616 -62.8368 395603659 1139309 440 9 793 11 Unrestricted 7.21 Metagenome 3300024581 *Microbiome Permanent Draft Cephalochordate Microbial Metagenomes Florida lancelet gut microbial communities from Tampa Bay, Florida, USA - NH002 University of California, San Diego, Scripps Institute of Oceanography 3300024581 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton No Host-associated Cephalochordata Intestine Digestive system Fecal lancelet gut 27.847583 -82.552861 348776592 440300 70 10 73 21 0.0 Metagenome 3300003206 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01.2K2-12 DOE Joint Genome Institute (JGI) 3300003206 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 430025 1310 25 1 38 1 SRX2576177 Unrestricted 0.0 Metagenome 3300011943 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00498 Weill Cornell Medical College 3300011943 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.85 -73.86 32684614 38768 21 0 23 0 SRX822467 0.0 Metagenome 3300025988 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_101 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025988 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 67248210 180058 135 3 223 4 SRX2564566, SRX2581038 Unrestricted 0.0 Metagenome 3300005775 *Microbiome Permanent Draft Human lung microbial communities from healthy (non-smokers and smokers) and HIV infected subjects Human lung microbial communities from Normal Control Background 101019-1 New York University Langone Medical Center 3300005775 Metagenome Analysis Shotgun released per JGI data release policy No Yes leopoldo.segal@nyumc.org Leopoldo N Segal No Host-associated Mammals: Human Lung Respiratory system Unclassified Lung Microbiome 40.7127 -74.0059 24341840 72105 4 3 6 1 0.0 Metagenome 3300064918 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 728 in Hairy hill, Alberta, Canada - S00JY_0711 Microbiome Insights 3300064918 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.4621528 -112.0407692 15252167 23798 32 1 85 3 0.0 Metagenome 3300025491 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_QV11A (SPAdes) DOE Joint Genome Institute (JGI) 3300025491 Metagenome Analysis spades v. 3.11.1 Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 21187857 28982 23 0 31 1 SRX3321670 Unrestricted 0.0 Metagenome 3300042848 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197 NMDC pilot DOE Joint Genome Institute (JGI) 3300042848 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040586 -106.94868265 1670162892 4138501 863 28 1686 44 SRX5355406 0.0 Metagenome 3300048887 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from Gulf of California, Mexico - CTD-FK190211-01-2006m-0.1-B DOE Joint Genome Institute (JGI) 3300048887 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 27.00134 -111.41153 466749461 731932 200 2 258 1 Unrestricted 75.15 Metagenome 3300022055 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 28 SPOT_SRF_2011-11-29 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022055 Metagenome Analysis spades v. 3.11.1-check Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 5741700 19368 5 3 3 6 SRX5471784, SRX5471786, SRX5471785 Unrestricted 0.0 Metagenome 3300002264 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP03-MB 3300002264 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300012821 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - DID2877_E24 MG DOE Joint Genome Institute (JGI) 3300012821 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie Yes 29545786 Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 87284368 112117 60 0 94 0 SRX3564707 Unrestricted 0.0 Metagenome 3300049322 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CAF2 DOE Joint Genome Institute (JGI) 3300049322 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 480615441 1206040 416 19 771 24 Unrestricted 7.85 Metagenome 3300011751 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00328 Weill Cornell Medical College 3300011751 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.78 -73.97 27327621 37437 16 0 19 0 SRX822301 0.0 Metagenome 3300000583 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 28MAY2007 hypolimnion v2 (version 3) DOE Joint Genome Institute (JGI) 3300000583 Metagenome Analysis released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 2337763 2496 0 0 0 0 Unrestricted 0.0 Metagenome 3300005262 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) DOE Joint Genome Institute (JGI) 3300005262 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.9082 -79.0499 471862115 922890 494 12 737 25 SRX1991099, SRX1991100 Unrestricted 0.0 Metagenome 3300028407 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica - Metagenome #680 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028407 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5602 78.1968 57781731 94643 31 2 58 2 SRX3242176 Unrestricted 0.0 Metagenome 3300017406 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Little Hot Creek, USA to study Microbial Dark Matter (Phase II) - LHC4sed_matched (SPADES assembly) (version 2) DOE Joint Genome Institute (JGI) 3300017406 Metagenome Analysis MEGAHIT v. 1.0.3 released Yes Yes brian.hedlund@unlv.edu; rstepanauskas@bigelow.org Brian Hedlund; Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring 37.6906 -118.8442 6.83 233126515 433001 139 0 180 0 SRX2753913 Unrestricted 0.0 Metagenome 3300007752 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 861967750 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007752 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 3479631 8991 6 0 12 0 SRX024907, SRX098556 0.0 Metagenome 3300070470 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_005-O-20200706-COMP-DNA1 3300070470 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 636 3 0 0 0 0 0.0 Metagenome 3300048869 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD24 DOE Joint Genome Institute (JGI) 3300048869 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.347657 -119.2808 54033812 62401 9 6 12 7 Unrestricted 590.39 Metagenome 3300002531 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-2-D DOE Joint Genome Institute (JGI) 3300002531 Metagenome Analysis Yes Yes jsvander@ucdavis.edu Jean VanderGheynst Yes 27981239 Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 259866220 426632 235 7 356 14 SRX2556918 Unrestricted 0.0 Metagenome 3300027790 *Microbiome Permanent Draft Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027790 Metagenome Analysis spades v. 3.11.1 Yes Yes jeremy.rich@maine.edu Jeremy Rich No Environmental Aquatic Coastal Marine Sediment Marine sediment 941723549 1887786 577 44 995 74 SRX2837943 Unrestricted 0.0 Metagenome 3300002817 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A2-10 DOE Joint Genome Institute (JGI) 3300002817 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 378901 1301 26 0 49 1 SRX1991106 Unrestricted 0.0 Metagenome 3300013341 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway plastic -P01301 Weill Cornell Medical College 3300013341 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Plastic surface city subway plastic 40.86 -73.85 17584295 32849 22 0 32 0 SRX823241 0.0 Metagenome 3300026893 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_21-May-14 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026893 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 58403968 149354 131 35 261 76 SRX2838982 Unrestricted 0.0 Metagenome 3300020227 *Microbiome Permanent Draft Processed tobacco microbial communities from USA domestic dry snuff Processed tobacco microbial communities from USA domestic dry snuff from retail store in Atlanta, GA, USA - Dry Snuff D1 SPADES Meta re-assembly Centers for Disease Control and Prevention (CDC), USA 3300020227 Metagenome Analysis SPADES Meta 3.10.0 Only Scaffolds >150 base pairs kept released by Tyx Yes Yes wyu3@cdc.gov Robert E. Tyx No Engineered Food production Unclassified Unclassified Unclassified processed fermented consumer product 33.733333 -84.383333 268513816 458876 112 14 159 42 0.0 Metagenome 3300043328 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-301 Genome Quebec 3300043328 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.470346 -97.650318 1401592892 3296524 448 35 760 63 0.0 Metagenome 3300051103 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Butler, South Dakota, USA - 86_887_SD_DR_0cm_c2_T1_16O DOE Joint Genome Institute (JGI) 3300051103 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 45.27223 -97.8369 1081091136 1915483 388 14 690 25 Restricted 16.99 Metagenome 3300006116 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE12Aug09 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006116 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 266214558 702974 149 63 242 118 SRX2565199 Unrestricted 0.0 Metagenome 3300027074 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF014 (SPAdes) DOE Joint Genome Institute (JGI) 3300027074 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 37900199 107749 49 2 95 7 SRX2014325 Unrestricted 0.0 Metagenome 3300036870 *Microbiome Permanent Draft Soil microbial communities from a coastal freshwater wetland in North Carolina, United States Soil microbial communities from coastal freshwater wetland in North Carolina, United States - 3PFC DOE Joint Genome Institute (JGI) 3300036870 Metagenome Analysis metaspades v. 3.13.0 Yes Yes peraltaa@ecu.edu Ariane Peralta No Environmental Terrestrial Wetlands Soil Unclassified soil 35.8959 -76.1658 698437382 1191695 283 12 499 12 SRX8387803 Unrestricted 13.64 Metagenome 3300034059 *Microbiome Permanent Draft Metagenome from bioreactors working in AMD treatment Acid mine drainage microbial communities from passive bioreactor in Bogota, Colombia - C3Bx Illumina 3300034059 Metagenome Analysis MEGAHIT v. 1.0.2 released by JGI data releasing policy No Yes mvillegas@microbiomas.org Marcela Villegas No Engineered Bioreactor Unclassified Anaerobic Unclassified Acid Mine Drainage 4.624335 -74.063644 136004566 301243 226 19 512 22 0.0 Metagenome 3300036562 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C4-3A DOE Joint Genome Institute (JGI) 3300036562 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 75800693 246546 202 8 330 9 SRX8786732 Unrestricted 4.35 Metagenome 3300020691 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 19AUG2008 hypolimnion DOE Joint Genome Institute (JGI) 3300020691 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 63037302 129711 88 4 125 9 Unrestricted 0.0 Metagenome 3300045221 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_5_B DOE Joint Genome Institute (JGI) 3300045221 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 195813999 230136 122 1 135 1 Unrestricted 94.67 Metagenome 3300012428 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100393 University of Pennsylvania 3300012428 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 10681998 13038 6 1 12 2 SRX756264 0.0 Metagenome 3300048997 *Microbiome Permanent Draft Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA - CNF8NT6 DOE Joint Genome Institute (JGI) 3300048997 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sydneyg@ucr.edu Sydney Glassman No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 33.6681 -117.456 2702490926 4256091 636 78 1012 111 Unrestricted 14.89 Metagenome 3300046466 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_161123.NP1 DOE Joint Genome Institute (JGI) 3300046466 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 866079001 1960978 537 86 947 137 Unrestricted 11.06 Metagenome 3300009361 *Microbiome Permanent Draft Anaerobic oil degrading microbial communities from River Tyne estuarine sediment Microbial communities from sediment of the River Tyne Estuary, UK - Pasteurized_176d_3 SPAdes University of Liverpool 3300009361 Metagenome Analysis SPAdes released per JGI data release policy No Yes ian.head@ncl.ac.uk, ian.head@ncl.ac.uk; ana.suarez-suarez@ncl.ac.uk Ian Head, Ian Head; Ana Suarez-Suarez No Environmental Aquatic Unclassified Sediment Unclassified sediment 54.9632021 -1.6348029 99039447 213493 72 2 118 3 0.0 Metagenome 3300034105 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127 DOE Joint Genome Institute (JGI) 3300034105 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1330827790 2541259 549 133 782 221 SRX7622089 Unrestricted 12.29 Metagenome 3300039970 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_022-O-20170711-COMP-DNA1 Battelle Memorial Institute 3300039970 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 19762786 56802 54 7 85 9 0.0 Metagenome 3300004827 *Microbiome Permanent Draft Chicken cecum microbial communities from Brno, Czech Republic, of chickens treated with various antibiotics Chicken cecum microbial communities from Brno, Czech Republic, of chickens treated with various antibiotics - Non treated high erm Masaryk University 3300004827 Metagenome Analysis IDBA released per JGI data release policy No Yes djurdjica.marosevic@gmail.com Durdica Marosevic No Host-associated Birds Large intestine Digestive system Ceca chicken cecum 49.19522 16.60796 36763511 72192 117 2 192 3 0.0 Metagenome 3300020036 *Microbiome Permanent Draft Freshwater viral communities from Chicago Sanitary Ship Canal, USA Freshwater viral communities from CSSC, Illinois, USA - 1 University of Illinois-Urbana Champaign 3300020036 Metagenome Analysis SPADES v3.10.1 released by JGI data releasing policy No Yes wtliu@illinois.edu Wen-Tso Liu No Environmental Aquatic River Freshwater Unclassified Freshwater 41.70333 -87.84111 379553734 759547 0 0 2 0 0.0 Metagenome 3300045697 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - LIV15-9-6-19 DOE Joint Genome Institute (JGI) 3300045697 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.3094 -120.7786 521650493 1374046 558 27 905 54 Restricted 6.84 Metagenome 3300029993 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_2 DOE Joint Genome Institute (JGI) 3300029993 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 747485897 1559318 437 84 681 158 SRX5357826 Unrestricted 10.8 Metagenome 3300011837 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00666 Weill Cornell Medical College 3300011837 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.8 -73.94 37139704 64589 23 0 29 0 SRX822633 0.0 Metagenome 3300045901 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from the Gibbon River area, Yellowstone National Park, WY, United States - MSUNE_GR_02 University of Wisconsin, Madison 3300045901 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.73616 -110.70644 35384202 53789 16 1 20 0 0.0 Metagenome 7000000153 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 764649650 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000153 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 605708 1395 0 0 0 0 SRX024981 0.0 Metagenome 3300015248 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT530_16_10D DOE Joint Genome Institute (JGI) 3300015248 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9231 -106.9513 142022036 363002 296 23 639 41 SRX3780476 Unrestricted 4.3 Metagenome 3300011511 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00723 Weill Cornell Medical College 3300011511 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -74.01 26776802 30587 13 1 21 1 SRX822690 0.0 Metagenome 3300010029 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S1_10_20 DOE Joint Genome Institute (JGI) 3300010029 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37229149 -119.2718121 159077026 344960 195 14 344 32 SRX2523199 Unrestricted 0.0 Metagenome 3300025898 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025898 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.4774 -85.451 2210122371 5431540 917 103 1955 164 SRX2745043 Unrestricted 0.0 Metagenome 3300042441 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D194_2 DOE Joint Genome Institute (JGI) 3300042441 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 158987143 215557 95 12 166 13 Unrestricted 80.16 Metagenome 3300040497 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_046-O-20170621-COMP-DNA1 Battelle Memorial Institute 3300040497 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 3566694 10346 43 14 69 17 0.0 Metagenome 3300043729 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - FT_A40 DOE Joint Genome Institute (JGI) 3300043729 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.1404 -62.9001 693410701 1904361 423 4 787 13 Unrestricted 9.24 Metagenome 3300007512 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate b Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300007512 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 800878305 947179 298 31 393 34 0.0 Metagenome 3300001527 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-5cm-13A)- 1 week illumina University of Tennessee 3300001527 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 180094921 769089 667 77 1151 140 0.0 Metagenome 3300008095 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-16 DOE Joint Genome Institute (JGI) 3300008095 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 952132824 1654573 979 44 1594 61 SRX3198460 Unrestricted 0.0 Metagenome 3300037166 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 E2 10-14 DOE Joint Genome Institute (JGI) 3300037166 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0467 666981400 1267273 301 28 513 38 SRX8143583 Unrestricted 9.69 Metagenome 3300014811 *Microbiome Permanent Draft Aquatic viral communities from harbor and ballast water - Michigan State University Aquatic viral communities from ballast water - Michigan State University - AB_ballast water Michigan State University 3300014811 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified Aquatic 111212077 298330 697 116 1956 184 SRX717341 0.0 Metagenome 7000000398 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159571453 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000398 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 14158735 30273 0 0 0 0 0.0 Metagenome 3300057270 *Microbiome Permanent Draft Sediment microbial communities from coastal wetlands in Copper River Delta, Alaska, USA Sediment microbial communities from freshwater pond in Copper River Delta, Alaska, USA - E.coli-low-clay DOE Joint Genome Institute (JGI) 3300057270 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rcolwell@coas.oregonstate.edu Frederick Colwell No Environmental Aquatic Pond Freshwater Sediment Sediment 60.478 -145.382 267174 563 3 0 2 0 Unrestricted 3279.35 Metagenome 3300029039 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 335_M Beijing Genomics Institute (BGI) 3300029039 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 158640502 214981 122 0 202 0 ERX491086 0.0 Metagenome 3300038627 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Realigned salt marsh sediment microbial communities from Mersea Island, United Kingdom - S MIRM 1Ar University of York 3300038627 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Realigned salt marsh sediment 51.79675 0.921833 92615096 256317 159 1 300 0 0.0 Metagenome 3300026983 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 21 (SPAdes) DOE Joint Genome Institute (JGI) 3300026983 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 106833469 209561 119 18 203 32 SRX4339792 Unrestricted 0.0 Metagenome 3300035207 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 DOE Joint Genome Institute (JGI) 3300035207 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 39.6589 -79.9058 831596224 2196665 818 75 1548 116 SRX8289428 Unrestricted 6.69 Metagenome 3300047364 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_140917.NP1 DOE Joint Genome Institute (JGI) 3300047364 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 720133827 1514135 481 79 779 143 Unrestricted 10.64 Metagenome 3300014537 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS60_12 University of Hohenheim 3300014537 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 91731748 135441 52 0 94 0 0.0 Metagenome 3300069266 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_001-O-20210621-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069266 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 45.844033 -121.999068 4456122864 9398479 1576 350 2743 570 0.0 Metagenome 3300024192 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 47D DOE Joint Genome Institute (JGI) 3300024192 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 241883003 570581 173 7 281 16 SRX4465450 Unrestricted 21.44 Metagenome 3300042221 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D168_3 DOE Joint Genome Institute (JGI) 3300042221 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 133852763 175100 69 8 105 16 Unrestricted 78.99 Metagenome 3300070238 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountains, Colorado, USA - RMNP_041-O-20170807-COMP-DNA1 3300070238 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 6935867 22260 28 1 44 0 0.0 Metagenome 3300039390 *Microbiome Permanent Draft Soil microbial communities from the crude oil polluted soil from Bobrka and the control soil from Bialowieza national park, Poland Soil microbial communities from Bialowieza Forest, Poland - X5A2 v. 2 Illumina 3300039390 Metagenome Analysis metaSPAdes v. 1.2.4 released by JGI data releasing policy No Yes valeria.imperato@uhasselt.be Valeria Imperato No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 52.7 23.86667 3556587 10321 9 3 32 4 0.0 Metagenome 3300004150 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_ThreeSqC_D1 DOE Joint Genome Institute (JGI) 3300004150 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.131752 -122.266335 883598516 3087356 898 22 1889 36 SRX7146206 Unrestricted 0.0 Metagenome 3300028833 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2 DOE Joint Genome Institute (JGI) 3300028833 Metagenome Analysis spades v. 3.11.1 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -40.3794 175.6106 3705415280 7383962 3464 55 5155 63 SRX5785005, SRX5785004 Unrestricted 0.0 Metagenome 3300013179 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100223 University of Pennsylvania 3300013179 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 20118528 52412 31 0 56 1 SRX756678 0.0 Metagenome 3300027286 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepA_8d DOE Joint Genome Institute (JGI) 3300027286 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 117235061 217861 89 4 101 4 SRX5245289 Unrestricted 20.02 Metagenome 3300000743 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 20SEP2008 epilimnion DOE Joint Genome Institute (JGI) 3300000743 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300033816 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005 DOE Joint Genome Institute (JGI) 3300033816 Metagenome Analysis spades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 800086521 1756417 491 54 747 73 SRX7621633 Unrestricted 12.87 Metagenome 3300045579 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mississippi River, Iowa, USA - NASQAN2011_286 DOE Joint Genome Institute (JGI) 3300045579 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 41.7805 -90.252 381326487 913104 420 88 742 129 Unrestricted 0.0 Metagenome 3300014159 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin10_60_metaG DOE Joint Genome Institute (JGI) 3300014159 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1201205059 2144756 573 4 925 7 SRX3293369 Unrestricted 10.21 Metagenome 3300000951 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 M2 (2) DOE Joint Genome Institute (JGI) 3300000951 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 5964825 5468 0 0 0 0 SRX3311545 Unrestricted 0.0 Metagenome 3300003170 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from above oceans and continental USA - SDPR-005 DOE Joint Genome Institute (JGI) 3300003170 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 8155604 25231 37 39 58 107 Unrestricted 0.0 Metagenome 3300042901 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR tubes DOE Joint Genome Institute (JGI) 3300042901 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 831831732 1288279 308 80 423 99 Unrestricted 22.75 Metagenome 3300061675 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0563 Microbiome Insights 3300061675 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 504034174 697949 144 4 215 4 0.0 Metagenome 3300012248 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00734 Weill Cornell Medical College 3300012248 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.76 -73.98 28542889 45342 18 0 35 0 SRX822701 0.0 Metagenome 3300046006 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater viral communities from Lake Mendota, Wisconsin, United States - ME_2020-09-11_23.5m_Virus_AB DOE Joint Genome Institute (JGI) 3300046006 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 711658774 1383897 164 6 256 7 Unrestricted 42.38 Metagenome 3300022898 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S109-311C-5 DOE Joint Genome Institute (JGI) 3300022898 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 223353443 599505 449 23 774 37 SRX4799353 Unrestricted 8.07 Metagenome 3300029373 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 076_4_28_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029373 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 194816870 238871 199 0 260 0 0.0 Metagenome 3300045441 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-649 Genome Quebec 3300045441 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.908326 -123.720615 858988464 1853200 326 96 608 155 0.0 Metagenome 3300041026 *Microbiome Permanent Draft Hydraulic fracturing wastewater impacted soil microbiome project Soil microbial communities from Fox Creek, Alberta, Canada - FC00 University of British Columbia 3300041026 Metagenome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy Yes Yes czhong@ualberta.ca Cheng Zhong No Environmental Terrestrial Unclassified Soil Unclassified Soil 53.9333 -116.8043 6652796 10215 21 6 41 6 0.0 Metagenome 3300025109 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025109 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -11.499 -81.405 278793635 626318 44 0 47 0 SRX2926761 Unrestricted 0.0 Metagenome 3300020168 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409BT metaG (spades assembly) DOE Joint Genome Institute (JGI) 3300020168 Metagenome Analysis spades v. 3.10.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 868987270 1575995 397 25 567 55 SRX3919922 Unrestricted 30.36 Metagenome 3300008260 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159551223 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008260 Metagenome Analysis SPADES 3.6.1 released per Rekha Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 180331707 227491 123 0 192 0 0.0 Metagenome 3300036380 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25.v15 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036380 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 130182810 230072 97 10 141 10 SRX8128122, SRX8128121 Unrestricted 0.0 Metagenome 3300017785 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N DOE Joint Genome Institute (JGI) 3300017785 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1881 -86.344 665084995 1593331 0 0 0 0 SRX8048355 Unrestricted 28.13 Metagenome 3300007514 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a Georgia Genomics Facility 3300007514 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 1016561786 1338174 487 22 608 31 0.0 Metagenome 3300040641 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Temperate deciduous broadleaf forest soil microbial communities from Baltimore, USA - 010_R1_022417 University of Maryland 3300040641 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate deciduous broadleaf forest soil 39.33068333 -76.62493333 2322514 8239 21 1 43 0 0.0 Metagenome 3300008451 *Microbiome Permanent Draft Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 virsorter University of Michigan 3300008451 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes duhaimem@umich.edu Melissa Duhaime No Environmental Aquatic Lake Freshwater Unclassified freshwater lake 41.7032 -83.2575 109234948 186225 0 0 0 0 0.0 Metagenome 3300047362 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_150513.NP1 DOE Joint Genome Institute (JGI) 3300047362 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 847798186 1749047 424 61 597 104 Unrestricted 16.61 Metagenome 3300026711 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A2-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300026711 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 15493804 53508 95 2 151 5 SRX1991110 Unrestricted 0.0 Metagenome 3300032207 *Microbiome Permanent Draft Microbial communities from various environments in Magnetic Island Reef, Townsville, Australia Seawater microbial communities from Magnetic Island Reef, Townsville, Australia - 36309 AGRF 3300032207 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes b.glasl@aims.gov.au Bettina Glasl No Environmental Aquatic Coastal Marine Unclassified Seawater -19.1531 146.8641 1076465314 2493149 482 87 606 177 0.0 Metagenome 3300025647 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes) (version 4) DOE Joint Genome Institute (JGI) 3300025647 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 38.8455 -76.4191 330163840 778477 0 0 0 0 SRX3301745, SRX2753457, SRX3301744 Unrestricted 0.0 Metagenome 3300028067 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Miss_RepC_8h DOE Joint Genome Institute (JGI) 3300028067 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 116036125 256146 145 3 205 4 SRX5245414 Unrestricted 18.44 Metagenome 3300034346 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from diseased Eunicella gazella from Algarve, Portugal - EG16N Molecular Research LP (MR DNA) 3300034346 Metagenome Analysis Metawrap workflow v. 1.0.6 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 23809441 28453 15 1 19 4 0.0 Metagenome 3300013835 *Microbiome Permanent Draft Human feces microbial community from healthy child, Los Angeles California, USA Human feces microbial community from healthy child, Los Angeles California, USA - CDI_000A University of California, Irvine 3300013835 Metagenome Analysis ray_Meta released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Host-associated Mammals: Human Large intestine Digestive system Fecal human feces 34.0522 -118.2437 52420185 51455 34 0 30 0 0.0 Metagenome 3300022491 *Microbiome Permanent Draft Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain - individual 1 Autonomous University of Barcelona 3300022491 Metagenome Analysis SPAdes v .3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.38 -0.51 29111330 35157 23 0 25 0 0.0 Metagenome 3300039126 *Microbiome Permanent Draft Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA - kan6 University of Minnesota 3300039126 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic River Freshwater Unclassified Freshwater 44.917867 -93.128967 4079442 5730 5 0 3 0 0.0 Metagenome 3300011403 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT166_2 DOE Joint Genome Institute (JGI) 3300011403 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8896 -106.9084 193625314 440129 220 30 419 55 SRX3368458 Unrestricted 0.0 Metagenome 3300025055 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Lake sediment bacterial and archeal communities from Gulf of Boni, Indonesia to study Microbial Dark Matter (Phase II) - ?I17A3 metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025055 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; aurele.vuillemin@gfz-potsdam.de Ramunas Stepanauskas; Aurele Vuillemin No Environmental Aquatic Lake Freshwater Sediment Lake sediment -2.75 121.05 7.2-7.4 6220547 20946 19 0 43 0 SRX3007310 Unrestricted 3267.31 Metagenome 3300049063 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - B16_B_BS (version 2) DOE Joint Genome Institute (JGI) 3300049063 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 412010192 900895 642 13 1277 22 Unrestricted 0.0 Metagenome 2124908038 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3 v4 (version 4) DOE Joint Genome Institute (JGI) 2124908038 Metagenome Analysis Velvet released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 220938187 375222 72 3 110 0 Unrestricted 0.0 Metagenome 3300017946 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10 DOE Joint Genome Institute (JGI) 3300017946 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 1396580715 2815499 677 80 1147 147 SRX3960468 Unrestricted 7.97 Metagenome 3300034658 *Microbiome Permanent Draft Extreme environments viral communities from various locations Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 524_CTD DOE Joint Genome Institute (JGI) 3300034658 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified filtered seawater 13.5136 -44.9626 85119030 176688 35 2 54 6 SRX7583411 Unrestricted 115.19 Metagenome 3300002262 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP07-MB 3300002262 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300049751 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MB20 DOE Joint Genome Institute (JGI) 3300049751 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 310270666 804683 484 9 1016 12 Unrestricted 8.2 Metagenome 3300049324 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 299-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300049324 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.907007 -107.027397 772765819 1789032 684 90 1237 114 Unrestricted 8.11 Metagenome 3300053781 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_136 DOE Joint Genome Institute (JGI) 3300053781 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 258580786 802814 1131 7 2018 13 Restricted 0.0 Metagenome 3300039672 *Microbiome Permanent Draft Glacier soil microbial communities from Mackay Glacier, Antarctica Glacier soil microbial communities from Mackay Glacier, Antarctica - MtG22-5 University of Pretoria 3300039672 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Terrestrial Glacier Soil Unclassified Glacier soil -76.967 161.159 55957853 103459 23 1 49 1 0.0 Metagenome 3300014005 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00768 Weill Cornell Medical College 3300014005 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -73.94 19943637 26981 14 0 30 0 SRX822734 0.0 Metagenome 3300005531 *Microbiome Permanent Draft Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 DOE Joint Genome Institute (JGI) 3300005531 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shadeash@msu.edu, shade.ashley@gmail.com Ashley Shade Yes 30397342 Environmental Terrestrial Unclassified Soil Unclassified Surface soil 40.7999 -76.3402 1201047597 2402574 877 41 1354 80 SRX2837995 Unrestricted 0.0 Metagenome 3300044211 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - C5-8-23-19 DOE Joint Genome Institute (JGI) 3300044211 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.3319 -120.3747 307604818 776316 521 49 880 87 Restricted 7.88 Metagenome 3300007754 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um, replicate b Georgia Genomics Facility 3300007754 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 308840191 373791 158 14 173 20 0.0 Metagenome 3300070325 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_001-M-20180723-COMP-DNA1 3300070325 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 85324621 253463 130 11 244 16 0.0 Metagenome 3300005817 *Microbiome Permanent Draft Microbial communities of produced water from Jiangsu Oil field in Yangzhou, China Microbial communities of produced water from Jiangsu Oil field in Yangzhou, China - Well_W2 University of California, San Diego 3300005817 Metagenome Analysis SPADES released per JGI data release policy No Yes ddgalzerani@eng.ucsd.edu Daniela Galzerani No Environmental Terrestrial Produced water Oil reservoir Unclassified Petroleum reservoir 32.0 119.0 36453830 92635 47 0 78 0 0.0 Metagenome 3300014793 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS51_18 University of Hohenheim 3300014793 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 132905600 203378 78 0 128 1 0.0 Metagenome 3300031776 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55 DOE Joint Genome Institute (JGI) 3300031776 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5341 -110.798 253693594 485595 145 0 203 0 SRX6411873 Unrestricted 202.1 Metagenome 3300031931 *Microbiome Permanent Draft Microbial communities from the deep biosphere Deep subsurface microbial communities from shale gas basins in Pennsylvania, USA - 2A_Day6.5 re-assembly Marine Biological Laboratory 3300031931 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Unclassified Deep subsurface Unclassified Deep subsurface 39.898 -79.976 49423737 74298 19 0 29 0 0.0 Metagenome 3300020447 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000745 (ERX556090-ERR599159) CEA Genoscope 3300020447 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -30.3455 -43.2924 1107321425 3010687 703 97 1543 146 0.0 Metagenome 3300026551 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026551 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 1478458979 2558067 451 19 722 34 SRX2565026 Unrestricted 0.0 Metagenome 3300036564 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C4-7B DOE Joint Genome Institute (JGI) 3300036564 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 75857322 248068 193 3 343 8 SRX8786869 Unrestricted 4.22 Metagenome 3300030129 *Microbiome Permanent Draft Simulated microbial communities from bacterial mixture, Uppsala, Sweden Simulated microbial communities from bacterial mixture, Uppsala, Sweden - Emulsion4 Uppsala University 3300030129 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Simulated 59.8509005 17.6300093 11004530 11681 6 0 6 0 0.0 Metagenome 3300027072 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF013 (SPAdes) DOE Joint Genome Institute (JGI) 3300027072 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 57985868 158202 42 5 83 9 SRX2014334 Unrestricted 0.0 Metagenome 3300009653 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Canada - AD_UKC130_MetaG DOE Joint Genome Institute (JGI) 3300009653 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 49.25 -123.1 575250986 1056446 801 4 1177 7 SRX2338886 Unrestricted 0.0 Metagenome 3300042823 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141 NMDC pilot DOE Joint Genome Institute (JGI) 3300042823 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92028116 -106.94891893 1012441209 2398801 550 19 960 17 SRX5354685 0.0 Metagenome 3300046114 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 369-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300046114 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9913 -107.0646 483105290 1204479 450 53 872 89 Unrestricted 0.0 Metagenome 7000000690 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 638754422 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000690 Metagenome Analysis No Yes ipagani@lbl.gov Ionna Pagani No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 103702644 149243 0 0 0 0 0.0 Metagenome 3300027699 *Microbiome Permanent Draft Marine microbial communities from oxygen minimum zone in the mesopelagic equatorial Pacific Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_250m (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027699 Metagenome Analysis spades v. 3.11.1 Yes Yes cdupont@jcvi.org Chris L. Dupont No Environmental Aquatic Oceanic Marine Unclassified Marine 8.0 -156.0 518181018 1180894 369 13 686 25 SRX1990990 Unrestricted 0.0 Metagenome 3300041061 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - T4D8 IDBA-UD 100x Baseclear 3300041061 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 83375842 125810 114 4 180 3 0.0 Metagenome 3300011928 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S17-04-R University of California, Los Angeles 3300011928 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 81048729 144109 74 0 103 1 SRX862798 0.0 Metagenome 3300041753 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_475 MetaG AgResearch, New Zealand, Mosgeil 3300041753 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1332973708 2531087 320 33 1058 46 0.0 Metagenome 3300036947 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - AD1 52 III DOE Joint Genome Institute (JGI) 3300036947 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 649423851 1138847 663 2 964 1 SRX8357767 Unrestricted 29.84 Metagenome 3300041941 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from the Rocky Mountain Biological Laboratory (RMBL), Gothic, Colorado, United States - 2009WM_3C DOE Joint Genome Institute (JGI) 3300041941 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9595 -106.99 126435521 414721 250 25 447 30 SRX14812830 Unrestricted 5.8 Metagenome 3300017652 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Organic Plus compost microbial communities from Emeryville, California, USA - eDNA 3rd pass 30_C BE-Lig OP (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017652 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes JMGladden@lbl.gov John Gladden No Engineered Solid waste Composting Mixed feedstock Commercial compost compost 37.83 -122.29 575686356 1001153 718 37 990 32 SRX3901852, SRX3901853 Unrestricted 0.0 Metagenome 3300033694 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from gas well in Marcellus Shale, West Virginia, United States - MIP3H_04122017 Ohio State University 3300033694 Metagenome Analysis IDBA-UD v. 1.1.1 No Yes rebdaly@colostate.edu Rebecca Daly No Environmental Terrestrial Fracking water Deep subsurface Unclassified Fracking Water 39.6017 -79.9761 1998979 1890 1 0 1 0 0.0 Metagenome 3300039099 *Microbiome Permanent Draft Freshwater microbial communities from Klamath Basin, USA Freshwater microbial communities from Upper Klamath Lake, Oregon, USA - MDT14-1 Oregon State University 3300039099 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.23 -121.52 13717386 19013 19 1 27 8 0.0 Metagenome 3300011208 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00468 Weill Cornell Medical College 3300011208 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.68 -73.96 28829386 47688 23 0 32 0 SRX822437 0.0 Metagenome 3300025384 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Section #3 (SPAdes) DOE Joint Genome Institute (JGI) 3300025384 Metagenome Analysis spades v. 3.11.1 Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.973481 -119.476345 133680257 240521 172 27 253 38 SRX3311902 Unrestricted 0.0 Metagenome 3300030096 *Microbiome Permanent Draft Human feces microbial communities from Tubingen, Germany Human feces microbial communities from Tubingen, Germany - A3 University of Tuebingen 3300030096 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 48.52 9.05 42562421 51854 43 0 61 0 0.0 Metagenome 3300042266 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D235_3 DOE Joint Genome Institute (JGI) 3300042266 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 160979189 223807 108 6 158 15 Unrestricted 72.73 Metagenome 3300034134 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 24HNC DOE Joint Genome Institute (JGI) 3300034134 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological hypolithic biocrust 34.3778 -117.6098 302615591 703732 494 50 885 59 SRX7619823 Unrestricted 8.95 Metagenome 3300069221 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_073-M-20210623-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069221 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 45.825842 -121.960125 2870846305 7170804 1284 311 2409 486 0.0 Metagenome 3300043204 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_6 (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043204 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 212886224 362536 59 10 125 11 SRX9140453 Unrestricted 73.76 Metagenome 3300028564 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant18 DOE Joint Genome Institute (JGI) 3300028564 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1150727 -123.147 817969517 1410292 770 14 1077 10 SRX5248465 Unrestricted 37.57 Metagenome 3300038551 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Sediment microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_West_1 DOE Joint Genome Institute (JGI) 3300038551 Metagenome Analysis metaspades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Wetlands Marine Sediment sediment 26.469 -80.4434 2859745260 4441721 943 2 1559 8 SRX9405630 Unrestricted 13.94 Metagenome 3300039933 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 031B_R1 University of Maryland 3300039933 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.22748333 25.01173889 21272267 36990 41 0 65 0 0.0 Metagenome 3300027210 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1449C-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027210 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2327 -123.9168 114975439 275114 170 31 272 40 SRX2753612 Unrestricted 0.0 Metagenome 3300031247 *Microbiome Permanent Draft Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG DOE Joint Genome Institute (JGI) 3300031247 Metagenome Analysis spades v. 3.12.0 Yes Yes rbneum@uw.edu Rebecca Neumann No Host-associated Plants Rhizosphere Roots Soil rhizosphere 47.6516 -122.3045 1161222669 2682357 751 12 1252 28 SRX5346258 Unrestricted 9.03 Metagenome 7000000219 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763759525 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000219 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 105174310 202893 0 0 0 0 0.0 Metagenome 3300043343 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-430 Genome Quebec 3300043343 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 54.993669 -108.344502 1623965345 3587713 611 179 986 358 0.0 Metagenome 3300043620 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 189-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043620 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.8582 -107.0969 770419492 1901335 467 29 854 58 Unrestricted 7.0 Metagenome 3300022874 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1077 DOE Joint Genome Institute (JGI) 3300022874 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 181923112 455129 112 0 163 1 SRX4397351 Unrestricted 9.08 Metagenome 3300036833 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in New South Wales, Australia - Pi_10 DOE Joint Genome Institute (JGI) 3300036833 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil -34.5 150.0 1606479768 2619320 348 31 572 42 SRX8386959 Unrestricted 15.07 Metagenome 3300025560 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025560 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.045666 -121.866516 191068938 398980 187 0 304 0 SRX7142148 Unrestricted 0.0 Metagenome 3300021371 *Microbiome Permanent Draft Coastal seawater microbial communities from Pivers Island, North Carolina, United States Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497 DOE Joint Genome Institute (JGI) 3300021371 Metagenome Analysis spades v. 3.11.1-check Yes Yes dana.hunt@duke.edu Dana Hunt No Environmental Aquatic Coastal Marine Unclassified seawater 34.7181 -76.6707 938821632 1919441 586 254 823 472 SRX4010395 Unrestricted 18.25 Metagenome 3300025872 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025872 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 820033257 1795930 454 75 703 136 SRX2855130 Unrestricted 0.0 Metagenome 3300012443 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100105 University of Pennsylvania 3300012443 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 7371129 20086 13 0 20 0 SRX756725 0.0 Metagenome 3300007366 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763840445 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007366 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 20303432 44556 32 0 38 0 0.0 Metagenome 3300070433 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_001-O-20180731-COMP-DNA1 3300070433 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 79606356 229355 156 34 310 61 0.0 Metagenome 3300007017 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Final time point T65 (3) (live) benzoate enrichments of Methanogenic microbial communities using Athabasca oil sands as inoculum Shell Corporation 3300007017 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 40439275 66176 28 0 47 0 0.0 Metagenome 3300001022 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1096 DOE Joint Genome Institute (JGI) 3300001022 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 336010 1168 19 0 38 1 SRX3311885 Unrestricted 0.0 Metagenome 3300060603 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210529_02_01 DOE Joint Genome Institute (JGI) 3300060603 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 833943837 1197866 168 135 203 208 Unrestricted 20.0 Metagenome 3300035431 *Microbiome Permanent Draft Bioreactor microbial communities from dechlorination culture samples - Genome Institute of Singapore Bioreactor microbial communities from dechlorination culture samples - Genome Institute of Singapore - CG1-PCE Genome Institute of Singapore 3300035431 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Bioreactor Unclassified Unclassified Unclassified Bioreactor 25317986 37153 28 0 40 0 SRX392468 0.0 Metagenome 3300006002 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_NADW_ad_2505m_LV_A DOE Joint Genome Institute (JGI) 3300006002 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 770218799 2159405 873 33 1424 70 SRX2775743 Unrestricted 0.0 Metagenome 3300027855 *Microbiome Permanent Draft Soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, under manipulated climate change conditions. Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027855 Metagenome Analysis spades v. 3.11.1 Yes Yes jmtalbot@bu.edu; ptempler@bu.edu Jennifer Bhatnagar; Pamela Templer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 1291012102 3103444 471 66 826 92 SRX2838811 Unrestricted 0.0 Metagenome 3300044813 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_34BS DOE Joint Genome Institute (JGI) 3300044813 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4367 -106.0519 884947068 1455306 369 26 587 39 SRX20649526 Unrestricted 14.09 Metagenome 7000000372 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 404239096 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000372 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 92302703 157179 0 0 0 0 0.0 Metagenome 3300029154 *Microbiome Permanent Draft Infant fecal microbial communities from Pittsburgh, USA Infant fecal microbial communities from Pittsburgh, USA - NECEvent2014_6_3 Banfield Lab, University of California, Berkeley 3300029154 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant fecal 40.4308 -79.9598 20784426 24231 41 0 44 0 0.0 Metagenome 3300039161 *Microbiome Permanent Draft Freshwater microbial communities from various watersheds in Southwestern British Columbia, Canada Freshwater microbial communities from Southwestern British Columbia, Canada - PDS_067 University of British Columbia 3300039161 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 49.0 -123.0 26581420 55428 48 0 72 0 0.0 Metagenome 3300028380 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300028380 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 4875698530 11651267 1836 156 3406 257 SRX2837048 Unrestricted 0.0 Metagenome 3300038711 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample08 King Abdulaziz City for Science and Technology (KACST) 3300038711 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 17.59 39.47 26918920 67803 45 0 80 0 SRX1097617 0.0 Metagenome 3300050496 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation DOE Joint Genome Institute (JGI) 3300050496 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Host-associated Plants Endosphere Roots Unclassified Populus endosphere 35.8444 -83.9599 1844424565 4585293 1702 53 3160 91 SRX2840061 0.0 Metagenome 3300055143 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_70-s34 day 245 DOE Joint Genome Institute (JGI) 3300055143 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1654886320 2389133 313 183 408 206 Unrestricted 36.22 Metagenome 3300006464 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 160400887 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006464 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 213490666 298777 188 0 270 0 0.0 Metagenome 3300024953 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 94_HOW11 (SPAdes) DOE Joint Genome Institute (JGI) 3300024953 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 89838083 125812 27 0 42 0 SRX2721169 Unrestricted 0.0 Metagenome 3300057014 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F2L_40_42 DOE Joint Genome Institute (JGI) 3300057014 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9762234 -81.70738203 1458423290 2230708 688 0 1126 0 Unrestricted 13.59 Metagenome 3300033990 *Microbiome Finished AMD Thaumarchaeota Genomes recovered from metagenomes AMD sediment microbial communities from Longshenao Mine, Guangxi, China - LSA2 Magigene technology co., LTD. 3300033990 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes luozhh7@mail2.sysu.edu.cn zhenhao luo No Engineered Wastewater Mine water Industrial wastewater Sediment AMD Sediment 24.83354 107.56888 1049914184 1826439 482 15 616 20 0.0 Metagenome 3300059060 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Biomass microbial communities from acid-phase anaerobic digester in WWTP, Madison, WI, USA - 20210625_SampleC DOE Joint Genome Institute (JGI) 3300059060 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Sludge Anaerobic digester Unclassified Biomass 43.0333 -89.3563 55753688 62416 61 0 87 0 Unrestricted 11.01 Metagenome 3300026917 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN103 (SPAdes) DOE Joint Genome Institute (JGI) 3300026917 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 39.23550963 -121.2836963 18482697 60606 135 7 218 8 SRX3311736, SRX3311735 Unrestricted 0.0 Metagenome 3300050321 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_88 DOE Joint Genome Institute (JGI) 3300050321 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -76.91 160.935 617258040 984486 176 28 202 44 SRX18235942 Restricted 27.35 Metagenome 2100351003 *Microbiome Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI - Type I v3 (version 3) DOE Joint Genome Institute (JGI) 2100351003 Metagenome Analysis Newbler released based on JGI ITS No Yes tmcmahon@engr.wisc.edu, tmcmahon@engr.wisc.edu; 1422460556@qq.com; 15527825168@163.com Katherine McMahon, Katherine McMahon; Song Wei; GuoFeng Yes 20148930 Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Wastewater treatment 43.078418 -89.386482 7-7.5 89499365 198616 94 8 179 0 Unrestricted 0.0 Metagenome 3300026346 *Microbiome Permanent Draft Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 C5 DOE Joint Genome Institute (JGI) 3300026346 Metagenome Analysis spades v. 3.11.1 Yes Yes ccraft@indiana.edu Chris Craft No Environmental Aquatic Wetlands Freshwater Sediment sediment 31.3377 -81.4644 47202939 145841 252 7 472 12 SRX4796668 Unrestricted 5.88 Metagenome 3300013689 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100516 University of Pennsylvania 3300013689 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12959911 25085 18 0 37 1 SRX756238 0.0 Metagenome 3300024231 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 43D DOE Joint Genome Institute (JGI) 3300024231 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 288131667 554792 151 21 226 34 SRX4465349 Unrestricted 20.02 Metagenome 3300000106 *Microbiome Permanent Draft Hot Spring microbial communities from Great Boiling Spring, Nevada Hot spring sediment microbial communities from Great Boiling Spring, Nevada - cellulolytic enrichment CS 77C v2 (version 2) DOE Joint Genome Institute (JGI) 3300000106 Metagenome Analysis Newbler released based on JGI ITS Yes Yes brian.hedlund@unlv.edu Brian P. Hedlund, Brian Hedlund Yes 23555835, 23673639 Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot Spring 40.71458 -119.369659 6.37 83681831 159033 66 0 89 0 Unrestricted 0.0 Metagenome 3300042156 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 DOE Joint Genome Institute (JGI) 3300042156 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.8942 -103.685 812041381 2116689 899 56 1587 85 Unrestricted 6.38 Metagenome 3300005373 *Microbiome Permanent Draft Marine sediment archaeal communities from Eel River Basin, California, USA Marine sediment archaeal communities from Eel River Basin, California, USA DOE Joint Genome Institute (JGI) 3300005373 Metagenome Analysis Unkonwn No Yes delong@mit.edu Edward DeLong Yes 15353801 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Marine sediment 40.785 -124.596 2116258 2403 8 0 6 0 0.0 Metagenome 3300031851 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515 DOE Joint Genome Institute (JGI) 3300031851 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Coastal Marine Unclassified seawater 36.7468 -122.0193 1901938438 3892320 860 354 1371 609 SRX6423769 Unrestricted 17.75 Metagenome 3300032354 *Microbiome Permanent Draft Understanding the reciprocal impacts of modified plant cell wall and associated microbiome Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4 DOE Joint Genome Institute (JGI) 3300032354 Metagenome Analysis spades v. 3.13.0 Yes Yes kalluriudayc@ornl.gov Udaya C. Kalluri No Host-associated Plants Stem Phyllosphere Wood/Secondary xylem xylem 32.1348 -81.9657 536962557 557759 74 54 84 76 SRX6871347 Unrestricted 112.94 Metagenome 2084038001 *Microbiome Finished Sulfur spring sediment and crust microbial communities from Zodletone, Oklahoma, USA Sulfur spring sediment and crust microbial communities from Zodletone, Oklahoma, USA - B1_filtered Mogene LC 2084038001 Metagenome Analysis none (individual reads) released per JGI data release policy No Yes aspain@ou.edu Anne M. Spain, Anne Spain No Environmental Aquatic Warm (34-42C) Thermal springs Sediment Sulfur spring sediment and crust 35.100293 -98.749601 6.68-7.05 15412187 45206 7121 733 13124 0 0.0 Metagenome 3300010314 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 2 OAHU.JWI-98 metaG DOE Joint Genome Institute (JGI) 3300010314 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms 21.3935 -157.7156 654011872 882943 10 4 16 11 SRX2525633 Unrestricted 0.0 Metagenome 3300026658 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G09K4-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026658 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 6275265 20834 65 3 147 4 SRX1991812 Unrestricted 0.0 Metagenome 3300000757 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 27JUL2009 hypolimnion DOE Joint Genome Institute (JGI) 3300000757 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu, tmcmahon@engr.wisc.edu; rrmalmstrom@lbl.gov Katherine McMahon, Katherine McMahon; Rex Malmstrom Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300003894 *Microbiome Permanent Draft Marine microbial communities from the northern Gulf of Mexico hypoxic zone Marine microbial communities from the northern Gulf of Mexico hypoxic zone - Cultivation independent assessment Argonne National Laboratory 3300003894 Metagenome Analysis IDBA-UD released per Supratim No Yes joz.ennn@gmail.com Cameron Thrash Yes 30533941 Environmental Aquatic Coastal Marine Unclassified Marine 28.7167 -90.8333 217715956 224069 68 1 65 2 0.0 Metagenome 3300042707 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from Clueless hydrothermal vent, Atlantic Ocean - BspSym_Cl_5_11-6 Re-assembly Max Planck Institute for Marine Microbiology 3300042707 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills -4.803266 -12.3718 162752908 153977 1 6 6 15 ERX3367181 0.0 Metagenome 2035918006 *Microbiome Draft Soil microbial communities from FACE and OTC sites in USA Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2+ DOE Joint Genome Institute (JGI) 2035918006 Metagenome Analysis Newbler released based on JGI ITS No Yes kuske@lanl.gov Cheryl Kuske No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.85 -76.53 156317799 387519 117 0 186 0 Unrestricted 0.0 Metagenome 3300002039 *Microbiome Permanent Draft Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease - 2012_LB_B3 3300002039 Metagenome Analysis IDBA-UD + SOAPdenovo + GAA made public per user request (Enrique Zozaya - 05/02/16 email) No Yes t.thomas@unsw.edu.au Torsten Thomas Yes 28419766 Host-associated Algae Ectosymbionts Red algae Unclassified Delisea pulchra -33.57 151.15 1010422860 3581828 289 124 707 203 0.0 Metagenome 3300037240 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 P-1-D DOE Joint Genome Institute (JGI) 3300037240 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0473 789968913 1472788 288 3 438 6 SRX8147076 Unrestricted 10.61 Metagenome 3300027222 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1546B-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027222 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2311 -123.8825 164796058 341678 161 11 243 15 SRX2753623 Unrestricted 0.0 Metagenome 3300013667 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00969 Weill Cornell Medical College 3300013667 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.82 17386182 21170 10 0 27 0 SRX822931 0.0 Metagenome 3300009109 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 234m, 2.7-0.2um, replicate b Georgia Genomics Facility 3300009109 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 557920014 753866 325 10 443 10 0.0 Metagenome 3300013955 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01180 Weill Cornell Medical College 3300013955 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.69 -73.84 18055170 34479 17 0 26 0 SRX823135 0.0 Metagenome 3300012030 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 2 #697 DOE Joint Genome Institute (JGI) 3300012030 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 137242935 294215 188 59 350 64 SRX3296314 Unrestricted 0.0 Metagenome 3300027902 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from the University of Notre Dame, USA, of lakes that contribute to methane emissions Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027902 Metagenome Analysis spades v. 3.11.1 Yes Yes sjones20@nd.edu Stuart Jones No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 41.7 -86.23 2337905085 5375069 1598 123 2694 236 Unrestricted 0.0 Metagenome 3300027444 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A1w-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300027444 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 49311348 157407 153 3 270 1 SRX1991129 Unrestricted 0.0 Metagenome 3300070960 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Agroecosystem, Kansas, USA - KONA_048-M-20170809-COMP-DNA1 3300070960 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Agricultural land Soil 1531094 4879 15 0 14 1 0.0 Metagenome 3300009055 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1556B-3 DOE Joint Genome Institute (JGI) 3300009055 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2022 -123.941 194799706 390182 304 179 507 270 SRX2753743 Unrestricted 0.0 Metagenome 3300040548 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_043-M-20170802-COMP-DNA1 Battelle Memorial Institute 3300040548 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 2642454 7841 32 1 49 2 0.0 Metagenome 3300039251 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P11_D8 DOE Joint Genome Institute (JGI) 3300039251 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 289136767 402772 100 1 163 0 SRX9635304, SRX9635303 Unrestricted 0.0 Metagenome 3300029264 *Microbiome Permanent Draft ACE Virus Marine viral community from the Austral Polar Province, Southern Ocean - ACE 070AD University of Michigan 3300029264 Metagenome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes duhaimem@umich.edu Melissa Duhaime No Environmental Aquatic Unclassified Marine Unclassified Marine -67.0928 145.0131 158366801 247659 127 79 119 151 0.0 Metagenome 3300050514 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation DOE Joint Genome Institute (JGI) 3300050514 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Host-associated Plants Rhizosphere Roots Soil Populus rhizosphere 35.8444 -83.9599 2603517027 6230743 1480 53 2908 96 SRX2923914 0.0 Metagenome 3300001010 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from South of Eden, South Pacific Ocean - MP1434 DOE Joint Genome Institute (JGI) 3300001010 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -38.64 150.41 6742179 20821 41 23 63 35 SRX1982590 Unrestricted 0.0 Metagenome 3300018032 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG DOE Joint Genome Institute (JGI) 3300018032 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 4.2396 -73.2024 832863802 1927366 803 7 1561 14 SRX3939482 Unrestricted 4.7 Metagenome 3300009647 *Microbiome Permanent Draft Anaerobic biogas reactor microbial communites from Washington, USA Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_A C13 SIP DNA DOE Joint Genome Institute (JGI) 3300009647 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes dacb@uw.edu David Beck Yes 28895946 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic biogas reactor 47.6525 -122.3049 500201519 853600 546 2 797 2 SRX2339077 Unrestricted 0.0 Metagenome 3300043612 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 140-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043612 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9354 -107.0135 433289581 1154571 388 8 705 15 Unrestricted 6.71 Metagenome 3300042071 *Microbiome Permanent Draft Forest and sugarcane field soil microbial communities from Santa Rita do Passa , Quatro, Sao Paulo, Brazil Soil microbial communities from forest in Santa Rita do Passa , Quatro, Sao Paulo, Brazil - FOR-D_1 UNESP-FCAV 3300042071 Metagenome Analysis Custom JGI assembly. Yes Yes No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -21.708519 -47.582469 20190068 41665 26 3 35 7 SRX9176021 0.0 Metagenome 3300070664 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone National Park, Wyoming, USA - YELL_052-M-20190820-COMP-DNA1 3300070664 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 8936635 28098 68 15 107 27 0.0 Metagenome 3300054996 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_106-s41 day 91 DOE Joint Genome Institute (JGI) 3300054996 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1023589195 1533514 118 130 174 143 Unrestricted 55.12 Metagenome 3300035130 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0606M12 DOE Joint Genome Institute (JGI) 3300035130 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8962 -97.0386 841887886 1903976 725 5 1281 4 SRX8256154 Unrestricted 6.28 Metagenome 3300014603 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01170 Weill Cornell Medical College 3300014603 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.88 27377877 37781 12 0 21 0 SRX823125 0.0 Metagenome 3300020453 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100001758 (ERX556003-ERR598963) CEA Genoscope 3300020453 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 34.0491 -49.8315 1286654743 3197787 627 104 1178 201 0.0 Metagenome 3300047492 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lake Yojoa, Honduras - Yojoa_01_2020_R_epi (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047492 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Lake Freshwater Unclassified Freshwater 14.9144 -88.0205 683955311 1143404 280 93 499 114 Unrestricted 0.0 Metagenome 3300028741 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_4 DOE Joint Genome Institute (JGI) 3300028741 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 522197653 1354978 251 11 375 20 SRX5356658 Unrestricted 0.0 Metagenome 3300000517 *Microbiome Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine microbial community from Cabo Rojo, Puerto Rico - PR CR 10% Liquid 3 DOE Joint Genome Institute (JGI) 3300000517 Metagenome Analysis released based on JGI ITS Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Enviromental 17.950617 -67.193417 120470807 242233 71 8 115 4 Unrestricted 0.0 Metagenome 3300039182 *Microbiome Permanent Draft Freshwater microbial communities from various watersheds in Southwestern British Columbia, Canada Freshwater microbial communities from Southwestern British Columbia, Canada - MOCK_1 University of British Columbia 3300039182 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 49.0 -123.0 48491552 68595 25 0 17 0 0.0 Metagenome 3300008305 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159753524 replicate 1 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008305 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 63010513 92549 58 0 82 0 0.0 Metagenome 3300048813 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 P2 20-24 DOE Joint Genome Institute (JGI) 3300048813 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3534 19.0472 616712837 847997 125 2 180 6 Restricted 18.97 Metagenome 3300049665 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought DOE Joint Genome Institute (JGI) 3300049665 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 344537906 687148 440 22 888 28 Unrestricted 11.37 Metagenome 3300025653 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025653 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 380770343 812070 234 100 370 155 SRX2892663 Unrestricted 0.0 Metagenome 3300003984 *Microbiome Permanent Draft Camel calf fecal microbial communities fro Rajasthan desert, India A Pilot study on the gut/digestive tract metagenomes of camel Anand Agricultural University 3300003984 Metagenome Analysis Newbler released per JGI data release policy No Yes dssena26@gmail.com, Suchitra.Dande@icar.gov.in Suchitra Sena Dande No Host-associated Mammals Large intestine Digestive system Fecal Camel calf fecal 0 0 0 0 0 0 0.0 Metagenome 3300029531 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P033V6 Beijing Genomics Institute (BGI) 3300029531 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 126562993 154746 115 0 146 0 0.0 Metagenome 3300028953 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 527_4M Beijing Genomics Institute (BGI) 3300028953 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 18229226 18174 13 0 7 0 ERX491176 0.0 Metagenome 3300006633 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_10_11 DOE Joint Genome Institute (JGI) 3300006633 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 16549434 46338 71 0 106 0 SRX2924377 Unrestricted 0.0 Metagenome 7000000008 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159814214 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000008 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 26264299 54445 0 0 0 0 0.0 Metagenome 3300029817 *Microbiome Permanent Draft Soil microbial communities from Marcell Experimental Forest, Minnesota, USA Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25 Georgia Institute of Technology 3300029817 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Terrestrial Unclassified Soil Unclassified Soil 47.5062 -93.45426667 417985954 789468 133 3 210 4 0.0 Metagenome 3300011386 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00350 Weill Cornell Medical College 3300011386 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.55 -74.15 20774137 22225 10 0 6 0 SRX822322 0.0 Metagenome 3300001718 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-48 DOE Joint Genome Institute (JGI) 3300001718 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 50.0005 -144.9964 93568769 221665 48 0 81 1 Unrestricted 0.0 Metagenome 3300013296 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG DOE Joint Genome Institute (JGI) 3300013296 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil miscanthus rhizosphere 42.3948 -85.3738 4442547738 9444032 3287 428 5437 730 SRX3900118 Unrestricted 6.7 Metagenome 3300014287 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00205 Weill Cornell Medical College 3300014287 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.66 -73.98 28991316 35030 15 0 19 0 SRX822184 0.0 Metagenome 3300008150 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 246515023 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008150 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 237489386 343472 235 1 291 2 0.0 Metagenome 3300020258 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556061-ERR598949) CEA Genoscope 3300020258 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 19.0108 64.532 181327366 471685 111 9 217 6 0.0 Metagenome 3300028192 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m DOE Joint Genome Institute (JGI) 3300028192 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified marine 50.0 -145.0 456339552 1035815 268 42 435 64 SRX5244194 Unrestricted 21.76 Metagenome 3300001272 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 20MAY2010 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300001272 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 20132390 47324 35 18 54 31 SRX1981962 Unrestricted 0.0 Metagenome 3300031253 *Microbiome Permanent Draft Extreme environments viral communities from various locations Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SI3U DOE Joint Genome Institute (JGI) 3300031253 Metagenome Analysis spades v. 3.12.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Coastal Marine Unclassified sea-ice brine 71.3731 -156.5049 118909712 306687 99 115 216 227 SRX5650309 Unrestricted 401.43 Metagenome 3300043357 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 204-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043357 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.8565 -107.0923 751980023 1910490 478 12 763 30 Unrestricted 6.23 Metagenome 2016842003 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP16 Fairy Spring Red Layer v1 DOE Joint Genome Institute (JGI) 2016842003 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23761787 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.533365 -110.849887 9-9.2 36317514 55048 17 0 29 0 Unrestricted 0.0 Metagenome 2236876016 *Microbiome Permanent Draft Deep Underground Science and Engineering Laboratory groundwater microbial communities from South Dakota, US Mine water biofilm microbial communities from Lead, South Dakota, sample from rock fracture pool HS4850BF040511-1 University of Florida 2236876016 Metagenome Analysis released per PI No Yes dave.bergmann@bhsu.edu David Bergmann No Environmental Aquatic Groundwater Freshwater Unclassified Deep Underground Science and Engineering Laboratory groundwater 44.3427 -103.7606 8.53 9921452 15836 15 2 29 0 0.0 Metagenome 3300001765 *Microbiome Permanent Draft Sinkhole freshwater microbial communities from Lake Huron, US Sinkhole freshwater microbial communities from Lake Huron, USA - combined 2007-2012 University of Michigan 3300001765 Metagenome Analysis IDBA assemblies for each sample were combined with Minimus2 released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Sinkhole Freshwater Unclassified Sinkhole freshwater 45.19843 -83.32721 123496144 124073 19 5 20 6 0.0 Metagenome 3300027935 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S2_0_10 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027935 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228379 -119.2717467 34933180 102273 151 18 293 24 SRX2523282 Unrestricted 0.0 Metagenome 3300006972 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB136-A DOE Joint Genome Institute (JGI) 3300006972 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.299 -156.61 195625224 415677 249 2 440 6 SRX2895659 Unrestricted 0.0 Metagenome 3300041747 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_34 MetaG AgResearch, New Zealand, Mosgeil 3300041747 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 2288326862 4377339 287 27 1207 48 0.0 Metagenome 3300012339 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100668 University of Pennsylvania 3300012339 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 23393557 53575 17 0 30 0 SRX756426 0.0 Metagenome 3300003616 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.DN DOE Joint Genome Institute (JGI) 3300003616 Metagenome Analysis Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 284573934 633358 305 6 511 12 Unrestricted 0.0 Metagenome 3300043585 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 085-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043585 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9277 -106.9786 424929211 1124165 385 16 711 18 Unrestricted 8.01 Metagenome 3300003471 *Microbiome Permanent Draft Wetland sediment microbial communities from Dorn Creek, Dane County, Wisconsin, USA, enriched for Fe-cycling cultures Fe-reducing enrichment culture from wetland. Sample 5 with periodic nitrate additions. 3300003471 Metagenome Analysis CLC Genomic Workbench released by JGI data releasing policy Yes Yes jmejia@wisc.edu Jacqueline Mejia No Environmental Aquatic Creek Freshwater Sediment Wetland sediment 43.135131 -89.441777 370091479 822112 260 8 617 10 0.0 Metagenome 3300050017 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 P1 30-34 DOE Joint Genome Institute (JGI) 3300050017 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.047 812469532 1069789 170 2 242 7 Restricted 20.03 Metagenome 7000000700 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 158944319 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000700 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 25812460 45264 0 0 0 0 0.0 Metagenome 3300027709 *Microbiome Permanent Draft Marine microbial communities from oxygen minimum zone in the mesopelagic equatorial Pacific Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_150m (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027709 Metagenome Analysis spades v. 3.11.1 Yes Yes cdupont@jcvi.org Chris L. Dupont No Environmental Aquatic Oceanic Marine Unclassified Marine 8.0 -156.0 540923006 1234083 517 12 783 18 SRX1991079 Unrestricted 0.0 Metagenome 3300070349 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Colorado, USA - CPER_006-M-20200624-COMP-DNA1 3300070349 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 33694239 90337 82 7 189 10 0.0 Metagenome 3300013540 *Microbiome Permanent Draft Fecal viral communites from wild urban brown rats in Berlin, Germany Fecal viral communites from wild urban brown rats in Berlin, Germany - KS/11/0582 Freie University Berlin 3300013540 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 52.529611 13.401343 275343 659 0 0 0 0 SRX616526 0.0 Metagenome 3300002330 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP19-I5 3300002330 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300047381 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_110824.NP2 DOE Joint Genome Institute (JGI) 3300047381 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 1183325646 2505380 664 111 970 167 Unrestricted 13.85 Metagenome 3300015185 *Microbiome Permanent Draft Human fecal microbial communities from infant diaper, Dhaka, Bangladesh Human fecal microbial communities from infant diaper, Dhaka, Bangladesh - DMDT001S Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300015185 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes dhtaft@ucdavis.edu Diana Taft No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant feces 23.8103 90.4125 40172564 57373 49 1 77 3 0.0 Metagenome 3300014269 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D1 DOE Joint Genome Institute (JGI) 3300014269 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.04565 -121.866287 336148621 828273 277 2 570 4 SRX7180772 Unrestricted 0.0 Metagenome 3300022326 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Garden Lake, Rottnest Island (WA - Australia) - GL1GP2 JM86 AGRF 3300022326 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.995604 115.536873 26562374 52864 37 1 51 1 0.0 Metagenome 3300036953 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - 2A-I DOE Joint Genome Institute (JGI) 3300036953 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 630683287 1190905 671 11 1036 21 SRX8360248 Unrestricted 19.65 Metagenome 3300008332 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 159753524 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008332 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 3674444 8316 6 0 10 5 SRX023628, SRX023627 0.0 Metagenome 3300038346 *Microbiome Permanent Draft Deep-sea hydrothermal vent sediment bacterial and viral communities from Southwest Indian Ocean Deep-sea hydrothermal vent sediment bacterial and viral communities from Southwest Indian Ocean - SWIR-S004-M Zhejiang University 3300038346 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Oceanic Marine Sediment Deep-sea hydrothermal vent sediment -27.85 63.94 7680857 19961 8 2 5 1 0.0 Metagenome 3300020572 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020572 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 149475202 322738 107 9 198 4 SRX3307851 Unrestricted 0.0 Metagenome 3300039853 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA Prairie soil microbial communities from Boone County, Iowa, USA - P13-WS-July2012 Iowa State University 3300039853 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land Prairie soil 42.01375 -93.783837 27020447 87316 111 5 206 15 0.0 Metagenome 3300001558 *Microbiome Finished Human fecal microbial communities from the University of Tokyo, Japan, of healthy Japanese infants and adults Human fecal microbial communities from the University of Tokyo - healthy human sample F2-X, Child, Male 3300001558 Metagenome Analysis PCAP released per Nikos No Yes hattori@k.u-tokyo.ac.jp Hattori M Yes 17916580 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 35.71 139.76 0 0 0 0 0 0 0.0 Metagenome 3300059768 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1546A-3 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059768 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2311 -123.8825 104085022 239597 181 31 270 58 SRX2753618 Unrestricted 0.0 Metagenome 3300059715 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1562A-02 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059715 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2105 -123.7516 249402763 540048 168 7 254 13 SRX2753758 Unrestricted 0.0 Metagenome 3300002281 *Microbiome Permanent Draft Soil microbial communities from Capivara Sierra National Park, Brazil Soil microbial communities from soil sediment in Caatinga - Brazil 3300002281 Metagenome Analysis CLC Genomics Workbench released by JGI data releasing policy No Yes dfdomingos@uol.com.br Daniela Domingos, Daniela F. Domingos No Environmental Terrestrial Sand Soil Unclassified Soil -8.6625 -42.6784 40097 56 0 0 0 0 0.0 Metagenome 3300032085 *Microbiome Finished The variation of viral communities during algal boom from the coastal of Qingdao, China Marine viral communities from the Yellow sea, Qingdao, China - WS0614 Beijing Novogene Bioinformatics Technology Co., Ltd 3300032085 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes foodyqw_12@163.com Yang Qingwei No Environmental Aquatic Coastal Marine Unclassified marine 36.06 120.38 227777610 386081 66 1 91 1 0.0 Metagenome 3300001319 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A28-PF)- 6 month illumina University of Tennessee 3300001319 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 10932236 49498 162 20 312 49 0.0 Metagenome 3300024316 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 66D DOE Joint Genome Institute (JGI) 3300024316 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 173611581 457890 185 37 304 38 SRX4472677 Unrestricted 14.17 Metagenome 3300038658 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Lake Dingle, Antarctica - #19 Australian Centre for Ecogenomics 3300038658 Metagenome Analysis Spades v. 3.12.0 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.56452 78.051 650246161 1171332 342 45 527 74 0.0 Metagenome 3300024947 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 52_LOW8 (SPAdes) DOE Joint Genome Institute (JGI) 3300024947 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 67445374 113551 31 0 40 0 SRX2720605 Unrestricted 0.0 Metagenome 3300043439 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-408 Genome Quebec 3300043439 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.523238 -99.843794 954952509 2249630 292 63 483 121 0.0 Metagenome 3300070748 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Northern Great Plains Research Laboratory, North Dakota, USA - NOGP_001-M-20200701-COMP-DNA1 3300070748 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 14936439 42243 50 4 97 5 0.0 Metagenome 3300030417 *Microbiome Permanent Draft Cryoconite microbial communities from the surface of glaciers from various locations Cryoconite microbial communities from the surface of Forni Glacier, Lombardia, Italy - ERS1030530 University of Milan-Bicocca 3300030417 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Ice Freshwater Cryoconite cryoconite 46.39822222 10.58555556 42108950 67249 30 1 43 5 ERX1273396 0.0 Metagenome 3300012457 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100706 University of Pennsylvania 3300012457 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 13525316 25693 6 5 15 9 SRX756144 0.0 Metagenome 3300027308 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.725 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027308 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 228140883 472948 267 90 387 172 SRX2753515 Unrestricted 0.0 Metagenome 3300018005 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_150 DOE Joint Genome Institute (JGI) 3300018005 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 701375928 1256971 425 2 743 4 SRX3960436 Unrestricted 18.05 Metagenome 3300000233 *Microbiome Draft Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- FS06_10 DOE Joint Genome Institute (JGI) 3300000233 Metagenome Analysis released based on JGI ITS Yes Yes jlm80@psu.edu Jennifer Macalady Yes 25620962 Environmental Aquatic Groundwater Freshwater Cave water Groundwater 43.383333 12.95 242610534 471920 253 23 403 49 Unrestricted 0.0 Metagenome 3300026134 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3438_5245 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026134 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -9.4986 -25.9999 240583194 599100 148 105 198 177 SRX2524287 Unrestricted 0.0 Metagenome 3300032173 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top DOE Joint Genome Institute (JGI) 3300032173 Metagenome Analysis spades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5106 -110.3566 5311228161 12405131 4014 47 6954 103 SRX6379669 Unrestricted 7.31 Metagenome 3300071044 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_022-O-20160823-COMP-DNA1 3300071044 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 65108789 185328 87 10 177 14 0.0 Metagenome 3300040102 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Mid-Atlantic, VA, USA - SCBI_002-M-20140915-COMP-DNA1 Argonne National Laboratory 3300040102 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89292 -78.1395 12246622 35501 33 7 73 14 ERX2134025 0.0 Metagenome 3300001086 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 DOE Joint Genome Institute (JGI) 3300001086 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 65338933 171907 153 36 243 48 SRX3312091 Unrestricted 0.0 Metagenome 3300002152 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection A3 DOE Joint Genome Institute (JGI) 3300002152 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.53 -107.78 200118367 441302 289 23 494 45 SRX1990960 Unrestricted 0.0 Metagenome 3300022190 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N DOE Joint Genome Institute (JGI) 3300022190 Metagenome Analysis spades v. 3.11.1-check Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1881 -86.344 408251434 1016301 2 0 0 0 Unrestricted 0.0 Metagenome 3300005154 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F13 DOE Joint Genome Institute (JGI) 3300005154 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 52803602 75117 78 0 88 0 SRX3195101 Unrestricted 0.0 Metagenome 3300003878 *Microbiome Permanent Draft Plastic marine debris microbial communities from the Atlantic Ocean Plastic marine debris microbial communities from the Atlantic Ocean - SEA_0142_20120611_metagen Marine Biological Laboratory 3300003878 Metagenome Analysis CLC workbench 7 released per JGI data release policy No Yes amaral@mbl.edu Linda Amaral-Zettler No Environmental Aquatic Oceanic Marine Unclassified marine 39.978 -68.882 240189182 456854 110 34 153 55 0.0 Metagenome 3300036566 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C2-3B DOE Joint Genome Institute (JGI) 3300036566 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 50069199 162631 156 4 251 7 SRX8816812 Unrestricted 4.16 Metagenome 3300005823 *Microbiome Permanent Draft Marine sediment microbial communities from Aarhus Bay station M5, Denmark Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 75 cmbsf, MM2 Aarhus University 3300005823 Metagenome Analysis IDBA released per JGI data release policy No Yes starnas88@gmail.com Piotr Starnawski No Environmental Aquatic Coastal Marine Sediment Marine sediment 56.10555 10.463333 251116629 365319 114 2 180 2 0.0 Metagenome 3300006112 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH10Oct08 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006112 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 248709730 662324 160 63 240 86 SRX2565424 Unrestricted 0.0 Metagenome 3300009928 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R10 University of New South Wales 3300009928 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 94979648 154173 67 2 93 3 0.0 Metagenome 3300030078 *Microbiome Permanent Draft Human fecal microbial communities from healthy and liver cirrhosis patients in Hangzhou, China Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-27_Run3 Zhejiang University 3300030078 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 30.0 120.0 4229033 8271 7 0 12 0 0.0 Metagenome 3300021073 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo DOE Joint Genome Institute (JGI) 3300021073 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified groundwater sediment 38.9197 -106.9492 .6 765392853 1686713 451 9 798 18 SRX4020708 Unrestricted 21.38 Metagenome 3300001401 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012 DOE Joint Genome Institute (JGI) 3300001401 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 137234926 327474 133 9 199 10 SRX1987658 Unrestricted 0.0 Metagenome 3300067222 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 823 in Enchant, Alberta, Canada - S00JY_0320 Microbiome Insights 3300067222 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 50.1313992 -112.190483 77112983 116683 64 2 100 3 0.0 Metagenome 3300007756 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDBack_2015_DNA CLC_assembly Marine Biological Laboratory 3300007756 Metagenome Analysis CLC genomics workbench, v. 7.0 released by Caroline Fortunato No Yes cfortunato@mbl.edu, cfortunato@gmail.com; elks@mit.edu Caroline Fortunato, Caroline Fortunato; Sabrina Elkassas Yes 29205750 Environmental Aquatic Oceanic Marine Aphotic zone Background seawater 45.9372 -130.082 198165383 377027 80 33 131 72 0.0 Metagenome 3300044693 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R DOE Joint Genome Institute (JGI) 3300044693 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 14.75 -16.85 1089104504 1772598 397 38 637 50 Unrestricted 18.21 Metagenome 3300031774 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915 DOE Joint Genome Institute (JGI) 3300031774 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.7468 -122.0193 2149778761 4616062 1154 323 1798 573 SRX6423950 Unrestricted 12.79 Metagenome 3300056673 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - APS1_4C_T0 DOE Joint Genome Institute (JGI) 3300056673 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 1809242743 2477470 636 108 772 159 Unrestricted 32.86 Metagenome 3300043133 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5ST15 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043133 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 52589511 126174 148 12 240 24 SRX8379494 Unrestricted 14.21 Metagenome 3300006421 *Microbiome Permanent Draft Deep-sea sediment bacterial and archaeal communities Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten I Center for Biotechnology (CeBiTec), Bielefeld Univeristy 3300006421 Metagenome Analysis Spades 3.6.0 released per JGI data release policy Yes Yes jrapp@mpi-bremen.de Josephine Rapp No Environmental Aquatic Oceanic Marine Sediment sediment 78.153207 5.975413 913292326 2692379 376 68 713 122 0.0 Metagenome 3300017944 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG DOE Joint Genome Institute (JGI) 3300017944 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 4.2396 -73.2024 1012134911 2476903 1450 68 2747 99 SRX3936929 Unrestricted 4.59 Metagenome 3300005266 *Microbiome Draft Switchgrass rhizosphere microbial communities from Michigan, USA Switchgrass rhizosphere microbial communities from Rose Lake, Michigan, USA - BV2.2 v2 (version 2) DOE Joint Genome Institute (JGI) 3300005266 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 44.166906 -89.649965 9288316 40517 129 9 217 8 Unrestricted 0.0 Metagenome 7000000255 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human throat microbial communities from NIH, USA - visit 2, subject 765560005 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000255 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human 39.0042816 -77.1012173 35580322 75850 0 0 0 0 SRX024877 0.0 Metagenome 3300021185 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015 DOE Joint Genome Institute (JGI) 3300021185 Metagenome Analysis spades v. 3.10.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.6907 -122.3448 1035017927 2056858 467 208 609 325 SRX4010483 Unrestricted 29.07 Metagenome 2049941002 *Microbiome Permanent Draft Sinkhole freshwater microbial communities from Lake Huron, US Sinkhole freshwater microbial communities from Lake Huron, US, Sample 419 University of Michigan 2049941002 Metagenome Analysis MIRA 3 No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Sinkhole Freshwater Unclassified Sinkhole freshwater 45.19843 -83.32721 25653388 37409 25 0 30 0 0.0 Metagenome 3300049326 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MB40 DOE Joint Genome Institute (JGI) 3300049326 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 193008436 477246 360 5 713 15 Unrestricted 14.81 Metagenome 3300007107 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 158944319 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007107 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 154271979 223426 107 0 151 0 0.0 Metagenome 3300037825 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18B_6_9_4 mgh University of Alberta 3300037825 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 30096462 40098 21 1 28 2 0.0 Metagenome 3300034344 *Microbiome Permanent Draft Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China - KO1 Sun Yat-Sen University 3300034344 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy No Yes yuxiaoli92@163.com Xiaoli Yu No Environmental Aquatic Intertidal zone Marine Mangrove sediment mangrove sediment 23.45 116.43 490307277 1176436 396 19 861 29 0.0 Metagenome 3300024475 *Microbiome Permanent Draft Marine bacterial communities from Xiamen coast, China Marine bacterial communities from Xiamen coast, China - S07 State Key Laboratory of Marine Environmental Sciences, Xiamen University 3300024475 Metagenome Analysis denovo v. 3.3 released by JGI data releasing policy No Yes tangkai@xmu.edu.cn Kaitang No Environmental Aquatic Coastal Marine Sediment marine 24.54 118.19 284990543 515974 161 6 262 11 0.0 Metagenome 3300003202 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment Column2K4-90 454 Life Sciences 3300003202 Metagenome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.345947 40.484555 6-8 0 0 0 0 0 0 0.0 Metagenome 3300004791 *Microbiome Permanent Draft Porphyra umbilicalis symbiont microbial communities from the coast of Maine, USA, in Atlantic Ocean Porphyra umbilicalis microbial communities from the coast of Maine, USA, in Atlantic Ocean HudsonAlpha Institute for Biotechnology 3300004791 Metagenome Analysis Allpaths-LG released per JGI data release policy No Yes seprochnik@lbl.gov Simon Prochnik No Host-associated Algae Unclassified Red algae Unclassified Porphyra umbilicalis 44.4 -68.4 96305248 94853 4 3 3 5 0.0 Metagenome 3300039124 *Microbiome Permanent Draft Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA - kan4 University of Minnesota 3300039124 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic River Freshwater Unclassified Freshwater 44.917867 -93.128967 3923374 6095 5 0 3 0 0.0 Metagenome 3300069531 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_004-O-20131122-COMP-DNA1 re-annotation Argonne National Laboratory 3300069531 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 2145585 6315 58 14 118 24 ERX2134006 0.0 Metagenome 3300017640 *Microbiome Permanent Draft Sediment Microbiome Project Freshwater sediment microbial communities from Ashument Pond, Falmouth, MA, USA - AP1 Molecular Research LP (MR DNA) 3300017640 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes songb@vims.edu Bongkeun Song No Environmental Aquatic Sediment Freshwater Unclassified Sediment 41.632 -70.5339 315002112 736187 306 10 467 15 0.0 Metagenome 3300040728 *Microbiome Draft Simulated microbial communities from University of Goettingen, Goettingen, Germany Simulated microbial communities from University of Goettingen, Goettingen, Germany - LWMC Reanalysis2 Goettingen Genomics Laboratory 3300040728 Metagenome Analysis SPAdes v. 3.14.0 released by JGI data releasing policy No Yes akipnya@gwdg.de Alex Kipnyargis No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified simulated 51.52850795 9.93232604 8-11.5 47817430 51428 28 0 14 0 0.0 Metagenome 3300007649 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1560A-3 DOE Joint Genome Institute (JGI) 3300007649 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2638 -123.4649 336278933 621653 286 114 438 216 Unrestricted 5.85 Metagenome 3300037162 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 E1 10-14 DOE Joint Genome Institute (JGI) 3300037162 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.047 579990503 1355412 477 21 836 32 SRX8143268 Unrestricted 7.22 Metagenome 3300025310 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025310 Metagenome Analysis spades v. 3.11.1 Yes Yes pfdunfie@ucalgary.ca; rstepanauskas@bigelow.org; jkjarett@lbl.gov Peter Dunfield; Ramunas Stepanauskas; Jessica Jarett No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 60.1987 -125.5127 7.16 1283102380 2246436 795 18 1255 23 SRX2839452 Unrestricted 0.0 Metagenome 3300065653 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 828a in Etizkom, Alberta, Canada - S00JY_0010 Microbiome Insights 3300065653 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.3635388 -111.0815252 10677392 16729 13 0 35 2 0.0 Metagenome 3300007516 *Microbiome Permanent Draft Freshwater microbial communities from lake liftoff mats and glacier meltwater in Antarctica Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 DOE Joint Genome Institute (JGI) 3300007516 Metagenome Analysis MEGAHIT v.1.0.3 Yes Yes slonczewski@kenyon.edu Joan Slonczewski No Environmental Aquatic Ice Freshwater Glacier meltwater Freshwater -77.605 163.163 1540040192 2737709 614 166 948 222 SRX2522339 Unrestricted 0.0 Metagenome 3300050478 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - E17NW0 DOE Joint Genome Institute (JGI) 3300050478 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 142939213 251963 196 60 368 94 Unrestricted 17.48 Metagenome 3300037480 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_500m_C5_10cm15cm DOE Joint Genome Institute (JGI) 3300037480 Metagenome Analysis metaspades v. 3.13.0 Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 37.0366 -121.2986 1066313711 1763078 491 1 817 2 SRX9141401 Unrestricted 17.38 Metagenome 3300056905 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F2L_60_62 DOE Joint Genome Institute (JGI) 3300056905 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9762234 -81.70738203 1832887649 2667253 813 6 1298 0 Unrestricted 15.17 Metagenome 3300033814 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Sediment microbial communities from East River floodplain, Colorado, United States - 55_j17 DOE Joint Genome Institute (JGI) 3300033814 Metagenome Analysis spades v. 3.13.0 Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Aquatic Sediment Floodplain Unclassified sediment 38.9229 -106.9499 634856778 1475260 480 6 884 7 SRX7630718 Unrestricted 10.08 Metagenome 3300049190 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - E14_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049190 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 153195409 344522 315 10 584 16 Unrestricted 0.0 Metagenome 3300012797 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched chicken feces microbial communities from UW Madison campus, WI, USA - DID2898_E24_Xylan MG DOE Joint Genome Institute (JGI) 3300012797 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Birds Large intestine Digestive system Fecal feces 43.073 -89.4011 54474056 77518 88 0 153 0 SRX3564800 Unrestricted 0.0 Metagenome 3300043041 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10WB15 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043041 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 6157975 18732 45 2 81 7 SRX8379129 Unrestricted 19.43 Metagenome 3300046004 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater viral communities from Lake Mendota, Wisconsin, United States - ME_2020-08-25_23.5m_Virus_AB DOE Joint Genome Institute (JGI) 3300046004 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 632182106 1177893 213 11 279 10 Unrestricted 47.33 Metagenome 3300060453 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210616_20_05 DOE Joint Genome Institute (JGI) 3300060453 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 426715434 626263 188 119 270 155 Unrestricted 37.98 Metagenome 3300033289 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108 DOE Joint Genome Institute (JGI) 3300033289 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 3231830812 7019465 963 11 1732 37 SRX5820636 Unrestricted 9.67 Metagenome 3300043961 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TS20 DOE Joint Genome Institute (JGI) 3300043961 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.4139 81296824 112367 105 7 93 8 SRX12658904 Unrestricted 184.58 Metagenome 3300069264 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_002-M-20210728-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069264 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 40.041058 -105.547043 3359529678 7005309 948 146 1761 257 0.0 Metagenome 3300020032 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in Texas, USA - hydraulic fracturing test 4_PW_90 DOE Joint Genome Institute (JGI) 3300020032 Metagenome Analysis spades v. 3.10.1 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Fracking water 30.238 -102.628 31279278 41948 52 1 47 4 SRX3937639 Unrestricted 518.81 Metagenome 3300027284 *Microbiome Permanent Draft Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland, that are autotrophic Deep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/5 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027284 Metagenome Analysis spades v. 3.11.1 Yes Yes rizlan.bernier-latmani@epfl.ch Rizlan Bernier-Latmani Yes 27739431 Environmental Aquatic Groundwater Deep subsurface Porewater Deep surbsurface 47.379 7.1648 268262929 402285 151 1 225 1 SRX957907 Unrestricted 0.0 Metagenome 3300027819 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW37 contaminated, 5.8 m (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300027819 Metagenome Analysis spades v. 3.11.1 Yes Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.099444 -73.604444 1161803823 2007806 721 13 1135 24 SRX3307784 Unrestricted 0.0 Metagenome 3300046462 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere DOE Joint Genome Institute (JGI) 3300046462 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1212 -123.2708 1243962454 1973994 348 100 536 116 Unrestricted 14.12 Metagenome 3300070783 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_010-O-20190109-COMP-DNA1 3300070783 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 29885015 94248 88 7 139 6 0.0 Metagenome 3300005221 *Microbiome Permanent Draft Microbial communities from the Yellowstone National Park, bulk metagenomes as controls for mini-metagenomic methods Sylvan Springs Unknown 11.1A - Microbial communities from the Yellowstone National Park, bulk metagenomes as controls for mini-metagenomic methods Stanford University 3300005221 Metagenome Analysis SpadeV3 released per JGI data release policy No Yes brianyu@stanford.edu, brian.yu@czbiohub.or Brian Yu No Environmental Aquatic Warm (34-42C) Thermal springs Unclassified hotspring 44.699383 -110.767717 4.3 3542705 5642 4 0 9 0 0.0 Metagenome 3300050494 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation DOE Joint Genome Institute (JGI) 3300050494 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Host-associated Plants Endosphere Roots Unclassified Populus endosphere 35.8444 -83.9599 1977847183 4958237 1255 78 2208 119 SRX2748476 0.0 Metagenome 3300017435 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_12SEP2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017435 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 224747035 452373 201 216 283 373 SRX3926234 Unrestricted 6.33 Metagenome 2189573022 *Microbiome Permanent Draft Soil microbial communities from Puerto Rico rain forest, that decompose switchgrass Soil microbial communities from Puerto Rico rain forest, that decompose switchgrass - feedstock-adapted consortia SG only DOE Joint Genome Institute (JGI) 2189573022 Metagenome Analysis released based on JGI ITS No Yes tchazen@lbl.gov, tchazen@utk.edu Terry Hazen, Terry C. Hazen Yes 24019987 Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 18.3724 -65.7166 152660070 197271 75 1 112 0 Unrestricted 0.0 Metagenome 3300006466 *Microbiome Permanent Draft Deep-sea sediment bacterial and archaeal communities Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten VI Center for Biotechnology (CeBiTec), Bielefeld Univeristy 3300006466 Metagenome Analysis Spades 3.6.0 released per JGI data release policy Yes Yes jrapp@mpi-bremen.de Josephine Rapp No Environmental Aquatic Oceanic Marine Sediment sediment 77.978277 0.163645 821088288 2463706 377 35 685 84 0.0 Metagenome 3300035025 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - C7-7 Autonomous University of Barcelona 3300035025 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 80260736 330116 652 0 1174 0 0.0 Metagenome 3300008997 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 250-2.7um, replicate b Georgia Genomics Facility 3300008997 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 800879438 947186 298 31 393 34 0.0 Metagenome 3300012862 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - DID2937_E24 MG DOE Joint Genome Institute (JGI) 3300012862 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Grasslands Soil Unclassified soil 43.073 -89.4011 152610958 224072 172 1 249 1 SRX3564733 Unrestricted 0.0 Metagenome 3300057016 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E1L_60_62 DOE Joint Genome Institute (JGI) 3300057016 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.997158 -81.489236 1068593534 1705533 569 1 1023 1 Unrestricted 12.47 Metagenome 3300049361 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - 5-2 DOE Joint Genome Institute (JGI) 3300049361 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 262755775 693833 334 6 626 8 Unrestricted 7.62 Metagenome 3300050273 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_29 DOE Joint Genome Institute (JGI) 3300050273 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.492 160.907 429385855 667084 77 13 136 24 SRX18236979 Restricted 36.89 Metagenome 3300014115 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room spacecraft assembly facility microbial communities from NASA Jet Propulsion Laboratory, California, USA - Floor swab, replicate B, treated with PMA SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300014115 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1991 -118.1715 2173529 4242 2 0 2 0 Unrestricted 0.0 Metagenome 3300044827 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_12CD DOE Joint Genome Institute (JGI) 3300044827 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.3682 -106.1737 1560684413 2602000 416 74 632 99 SRX20649969 Unrestricted 14.52 Metagenome 3300005697 *Microbiome Finished Human fecal microbial communities from the State University of New York at Buffalo, New York, USA, of three healthy adults Human fecal microbial communities J Craig Venter Institute, Maryland, USA - Subject 8 J. Craig Venter Institute, Washington University in St. Louis 3300005697 Metagenome Analysis Celera No Yes srgill@buffalo.edu Steven R. Gill Yes 16741115 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 39.134321 -77.181702 20492925 28154 58 0 87 0 0.0 Metagenome 2081372011 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Singapore and Univ of Illinois at Urbana, that are terephthalate-degrading Wastewater bioreactor microbial communities from Singapore -Terephthalate degrading community (Batch bottle culture with BES DNA_dereplicate_75bp) DOE Joint Genome Institute (JGI) 2081372011 Metagenome Analysis newbler released per Simon -- IMGSUPP2949 No Yes sgtringe@lbl.gov Susannah Tringe Yes 20686509 Engineered Bioremediation Wastewater Terephthalate Activated sludge Wastewater bioreactor 1.332 103.756 53958122 157737 0 0 0 0 0.0 Metagenome 3300005901 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_201 DOE Joint Genome Institute (JGI) 3300005901 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 304998247 1030129 405 8 789 28 SRX2564567, SRX2581033 Unrestricted 0.0 Metagenome 3300014168 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin17_10_metaG DOE Joint Genome Institute (JGI) 3300014168 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1507895225 3247159 733 81 1313 155 SRX3293761 Unrestricted 5.11 Metagenome 3300031399 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #650 DOE Joint Genome Institute (JGI) 3300031399 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 445246760 768942 115 37 167 70 SRX5649501 Unrestricted 32.49 Metagenome 3300002579 *Microbiome Permanent Draft Ridgeia piscesae microbial communities from Northeast Pacific Ocean hydrothermal vents Host-associated microbial community of the tubeworm Ridgeia piscesae from hydrothermal vents Sample -index 13 (Hulk HF) Canada's Michael Smith Genome Sciences Centre 3300002579 Metagenome Analysis released per JGI data release policy No Yes maepz@hotmail.com Maeva Perez, maeva perez No Host-associated Annelida Trophosome Intracellular endosymbionts Unclassified Ridgeia piscesae 47.95 -129.083563 347780790 783736 5 5 8 11 0.0 Metagenome 3300029156 *Microbiome Permanent Draft Aquariaum water viral communities from Chicago, USA Aquariaum water viral communities from Chicago, USA - Oceanarium - OC2 Michigan State University 3300029156 Metagenome Analysis released Yes Yes No Environmental Aquatic Unclassified Aquaculture Unclassified Aquarium water 41.87 -87.61 9791825 23361 27 1 59 0 0.0 Metagenome 3300002441 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP13-I1 3300002441 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300003235 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05K1-12 DOE Joint Genome Institute (JGI) 3300003235 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 321315 1093 24 6 53 5 SRX2576117 Unrestricted 0.0 Metagenome 3300046507 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere DOE Joint Genome Institute (JGI) 3300046507 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5875 -123.1936 971394924 1424496 312 73 393 102 Unrestricted 20.04 Metagenome 3300000497 *Microbiome Permanent Draft Lentic microbial communities from Lake Waban, Wellesley MA, that are anoxygenic and photosynthetic Lentic microbial communities from Lake Waban, Wellesley MA, that are anoxygenic and photosynthetic, photosynthetic consortia incandescent light Marine Biological Laboratory 3300000497 Metagenome Analysis No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Lentic Freshwater Littoral zone Lentic 42.2876 -71.30117 39148893 76567 14 0 34 0 0.0 Metagenome 3300020159 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erken, Sweden Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1 SciLifeLab 3300020159 Metagenome Analysis megahit v. 1.0.3 released per PI No Yes rhiannon.mondav@gmail.com Rhiannon Mondav No Environmental Aquatic Lake Freshwater Unclassified Freshwater 59.83763399 18.6203826 897952469 1818764 530 166 749 289 0.0 Metagenome 3300047512 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lake Yojoa, Honduras - Yojoa_06_2019_Q_epi (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047512 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Lake Freshwater Unclassified Freshwater 14.8889 -87.9718 451395511 812149 265 66 435 94 Unrestricted 0.0 Metagenome 3300036521 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Symplocastrum torsivum CPER-KK1 and co-occurring heterotrophs from soil from Central Plains Experimental Range, Colorado, United States - 20190111_54 DOE Joint Genome Institute (JGI) 3300036521 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Grasslands Soil Unclassified Soil 40.822 -104.7128 55128177 57563 23 1 15 1 SRX8850040 Unrestricted 242.87 Metagenome 3300026177 *Microbiome Permanent Draft Anaerobic reactors microbiome study Activated sludge microbial communities from lab. scaled anaerobic digester in Belvaux, Luxembourg - ACS2-63 University of Luxembourg 3300026177 Metagenome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 49.506216 5.943617 273397294 334650 87 6 162 3 0.0 Metagenome 3300022876 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0907-MG DOE Joint Genome Institute (JGI) 3300022876 Metagenome Analysis spades v. 3.11.1 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 205068188 327539 139 3 221 1 SRX4370022 Unrestricted 37.86 Metagenome 3300007023 *Microbiome Permanent Draft Non-marine hypersaline water viral communities from Mallorca 2014 (Spain)E1 Non-marine hypersaline water viral communities from Mallorca, Spain, 2014 - E1 T9 University of Alicante 3300007023 Metagenome Analysis IDBA 1.1.1 PRE correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline water 39.338015 3.051796 28682918 79453 33 0 11 0 0.0 Metagenome 3300029707 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36698 Beijing Genomics Institute (BGI) 3300029707 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 208103661 266706 184 0 245 0 0.0 Metagenome 3300013720 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100461 University of Pennsylvania 3300013720 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12412514 34940 21 0 27 0 SRX756537 0.0 Metagenome 3300007364 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 809635352 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007364 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 1835642 3072 3 0 2 1 0.0 Metagenome 3300059832 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.1C.12 SIP fraction DOE Joint Genome Institute (JGI) 3300059832 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 322114915 572447 285 29 462 54 Unrestricted 0.0 Metagenome 3300043206 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_8 (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043206 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 215849999 356830 67 4 110 5 SRX9140450 Unrestricted 77.79 Metagenome 3300031798 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19 DOE Joint Genome Institute (JGI) 3300031798 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1304301835 3107250 348 3 608 7 SRX5818308 Unrestricted 11.97 Metagenome 3300029071 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 181_B Beijing Genomics Institute (BGI) 3300029071 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 19693820 21590 8 0 10 0 ERX490980 0.0 Metagenome 3300017567 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS378 with 0.8UM filter JGI facility at Oak Ridge National Laboratory 3300017567 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 39955805 84758 56 1 94 5 0.0 Metagenome 3300028566 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_2 DOE Joint Genome Institute (JGI) 3300028566 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 643086772 1419963 292 42 489 66 SRX5281066 Unrestricted 0.0 Metagenome 3300045775 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - G1-R1-A DOE Joint Genome Institute (JGI) 3300045775 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.048 393429502 774916 190 17 320 27 Unrestricted 8.17 Metagenome 3300025019 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-35 (SPAdes) DOE Joint Genome Institute (JGI) 3300025019 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 49.2831 -134.6656 57159424 71746 4 1 5 1 Unrestricted 0.0 Metagenome 3300002848 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA PDIso5.158Aa3July202012 McGill University 3300002848 Metagenome Analysis SPAdes3.1.0 released per JGI data release policy No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey No Environmental Aquatic Tepid (25-34C) Thermal springs Sediment Hydrocarbon resource environments -38.358926 176.368682 5.01 5709735 6397 2 0 2 0 0.0 Metagenome 3300009403 *Microbiome Permanent Draft Microbial communities in swimming pool backwashes Microbial communities from sand-filter backwash in Singapore swimming pools - KB-1 Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300009403 Metagenome Analysis megahit released per JGI data release policy Yes Yes martintayqx@gmail.com Martin Tay No Engineered Built environment Unclassified Unclassified Unclassified Swimming pool sandfilter backwash 1.28967 103.85007 183903459 382840 87 46 107 90 0.0 Metagenome 3300020005 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - L3m2 DOE Joint Genome Institute (JGI) 3300020005 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9138 -106.8952 282012268 598283 230 33 460 39 SRX3944037, SRX3944036 Unrestricted 0.0 Metagenome 3300008887 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T5 (2) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO Shell Corporation 3300008887 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl .ac.uk, ianhead@ncl .ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 110544130 373314 150 0 276 2 0.0 Metagenome 3300030094 *Microbiome Permanent Draft Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA - cet10 University of Minnesota 3300030094 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic River Freshwater Unclassified Freshwater 44.917867 -93.128967 4521680 4515 6 0 7 0 0.0 Metagenome 3300004142 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG09_land_8/20/14_0.10 DOE Joint Genome Institute (JGI) 3300004142 Metagenome Analysis MEGAHIT v. 0.2.0 revert back to private per Christa Yes Yes jbanfield@berkeley.edu, jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield, Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 349976090 865983 999 29 1623 57 SRX3348153 Unrestricted 0.0 Metagenome 3300034136 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 29HNS DOE Joint Genome Institute (JGI) 3300034136 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Sub-biocrust Soil Unclassified sub-biocrust soil 34.3778 -117.6098 205654125 515448 486 30 833 44 SRX7619827 Unrestricted 9.62 Metagenome 3300042264 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D168_1 DOE Joint Genome Institute (JGI) 3300042264 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 155139492 208451 96 7 121 14 Unrestricted 93.91 Metagenome 3300037671 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - 15S-I DOE Joint Genome Institute (JGI) 3300037671 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 1741536220 3431125 1316 186 1869 282 SRX9140871 Unrestricted 9.66 Metagenome 3300040583 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_003-M-3-10-20130701-GEN-DNA1 Argonne National Laboratory 3300040583 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 1973883 6059 28 0 50 0 ERX2134018 0.0 Metagenome 3300070528 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Arizona, USA - SRER_006-M-20190806-COMP-DNA1 Battelle Memorial Institute 3300070528 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.795656 -110.910239 6.45-8.57 10821772 34206 60 8 84 4 0.0 Metagenome 3300042531 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 DOE Joint Genome Institute (JGI) 3300042531 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.9457 -103.6985 310103772 823813 406 16 691 33 Unrestricted 8.36 Metagenome 3300034408 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Eunicella verrucosa from Algarve, Portugal - EV01H Molecular Research LP (MR DNA) 3300034408 Metagenome Analysis Metawrap workflow v. 1.0.6 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 45195038 47537 4 1 6 10 0.0 Metagenome 3300034687 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Soil microbial communities from Mojave Desert, California, United States - 1NOC DOE Joint Genome Institute (JGI) 3300034687 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Desert Soil Unclassified soil 34.7856 -115.66 198610457 517465 424 13 749 15 SRX7613674 Unrestricted 9.25 Metagenome 3300033696 *Microbiome Permanent Draft Marine Fish Microbial Metagenomes Atlantic cod gut microbial communities from Lofoten, Atlantic Ocean - L_03 Centre for Ecological and Evolutionary Synthesis (CEES), University of Oslo 3300033696 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton No Host-associated Fish Intestine Digestive system Unclassified fish gut 67.879188 14.106298 49914134 65513 46 3 45 12 0.0 Metagenome 3300012125 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Florida, USA - TSFL090 MetaG DOE Joint Genome Institute (JGI) 3300012125 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 30.3423 -84.2548 120329382 214949 159 42 261 74 SRX3539748 Unrestricted 0.0 Metagenome 3300042817 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116 NMDC pilot DOE Joint Genome Institute (JGI) 3300042817 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.91721605 -106.9559947 1410669878 3335579 622 22 1192 39 SRX5354614 0.0 Metagenome 3300025386 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 415-3 shallow-072012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025386 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 120229439 272673 165 64 331 85 SRX1987646 Unrestricted 0.0 Metagenome 3300064947 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 746 in Carstairs, Alberta, Canada - S00JY_0519 Microbiome Insights 3300064947 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.29325538 -114.0540409 4367434 6780 15 0 35 0 0.0 Metagenome 3300046116 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_195 DOE Joint Genome Institute (JGI) 3300046116 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 510960158 1296398 520 10 1007 26 Unrestricted 0.0 Metagenome 3300017589 *Microbiome Permanent Draft Chitin-enriched microbial communities from Haiyan Wetland Chitin-enriched microbial communities from Haiyan Wetland Chengdu Institute of Biology, Chinese Academy of Sciences 3300017589 Metagenome Analysis IDBA released by JGI data releasing policy No Yes daiym4033@hevttc.edu.cn Yumei DAI No Environmental Terrestrial Wetlands Soil Unclassified soil 36.53 101.0 391407680 622346 752 45 1036 44 0.0 Metagenome 3300011653 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00333 Weill Cornell Medical College 3300011653 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.99 30795489 46377 10 0 14 0 SRX822306 0.0 Metagenome 3300022665 *Microbiome Permanent Draft Deep seafloor sediment microbial communities from Yap Trench, western Pacific Ocean Marine sediment microbial community from Yap Trench, western Pacific Ocean - 37I-Yap-S01 Third Institute of Oceanography, State Oceanic Administration 3300022665 Metagenome Analysis idba v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Sediment Marine Unclassified sediment 9.661117 138.68097 517965717 789435 209 1 399 3 0.0 Metagenome 3300048827 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 S3 20-24 DOE Joint Genome Institute (JGI) 3300048827 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3532 19.0475 606113244 805442 159 2 183 4 Restricted 20.63 Metagenome 3300019718 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLT_5-6_MG DOE Joint Genome Institute (JGI) 3300019718 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 109363946 272018 228 23 408 36 Unrestricted 3.55 Metagenome 3300052909 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Wyoming, USA - R_L3_S1 DOE Joint Genome Institute (JGI) 3300052909 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 41.02599 -106.63601 59297044 110775 60 18 124 40 Unrestricted 122.48 Metagenome 3300049382 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - 13-3 DOE Joint Genome Institute (JGI) 3300049382 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 162944829 483376 286 6 488 7 Unrestricted 6.14 Metagenome 3300003986 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SN (v2) (version 2) DOE Joint Genome Institute (JGI) 3300003986 Metagenome Analysis MEGAHIT v. 0.1.3-bugfix2 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 675281338 1862928 432 128 780 270 SRX2565073, SRX2565074, SRX2565075 Unrestricted 0.0 Metagenome 3300055449 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.17W.7 SIP fraction DOE Joint Genome Institute (JGI) 3300055449 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 220470572 401723 100 6 149 13 Unrestricted 46.24 Metagenome 3300025208 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025208 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.9082 -79.0499 93606454 143926 49 0 69 0 SRX1991090 Unrestricted 0.0 Metagenome 3300028628 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Val DOE Joint Genome Institute (JGI) 3300028628 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 274397841 451796 212 0 284 0 SRX5282064 Unrestricted 30.59 Metagenome 3300020269 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556080-ERR599041) CEA Genoscope 3300020269 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 23.4017 37.2183 236961632 631568 264 25 412 56 0.0 Metagenome 3300011384 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01088 Weill Cornell Medical College 3300011384 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.95 16603216 21263 11 0 25 0 SRX823043 0.0 Metagenome 3300029823 *Microbiome Permanent Draft Liquor fermentation pit mud microbial communities from Chongqing University, China Liquor fermentation pit mud microbial communities from Luzhou, China - Meta-4-2-220-M Chongqing University 3300029823 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Engineered Bioreactor Unclassified Unclassified Unclassified Fermentation pit mud 28.88 105.45 165797189 229089 109 0 175 0 SRX691273 0.0 Metagenome 3300019765 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States - IW13Sep16_MG DOE Joint Genome Institute (JGI) 3300019765 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Unclassified freshwater 38.7906 -75.1638 289545636 680804 366 72 651 144 SRX3983639 Unrestricted 5.31 Metagenome 3300025928 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025928 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.4774 -85.451 3504050765 7978360 1109 82 2046 173 SRX2745054 Unrestricted 0.0 Metagenome 3300043388 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 249-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043388 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9615 -107.0285 580957728 1654871 600 23 1108 47 Unrestricted 7.16 Metagenome 3300013712 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00202 Weill Cornell Medical College 3300013712 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.57 -73.98 21244203 31889 12 0 13 1 SRX822181 0.0 Metagenome 3300002140 *Microbiome Permanent Draft Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t2FKB2 (112f) 3300002140 Metagenome Analysis released by JGI data releasing policy No Yes daniel.herlemann@io-warnemuende.de, daniel.herlemann@emu.ee Daniel Herlemann, Daniel P. Herlemann No Environmental Aquatic Unclassified Unclassified Unclassified Marine 57.305 20.0745 238978668 1052839 202 70 372 105 0.0 Metagenome 3300069373 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Ozarks Complex, AL, USA - LENO_001-M-20160829-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069373 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.85388 -88.16122 30340914 98033 115 4 201 10 0.0 Metagenome 3300046392 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA052-BCT DOE Joint Genome Institute (JGI) 3300046392 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6779 -83.4786 434838787 1076786 209 31 429 28 Unrestricted 8.87 Metagenome 3300013278 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100414 University of Pennsylvania 3300013278 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 35492863 72247 27 1 37 0 SRX756584 0.0 Metagenome 3300070666 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Bartlett Experimental Forest, New Hampshire, USA - BART_002-O-20170612-COMP-DNA1 3300070666 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 73305769 211296 123 29 241 39 0.0 Metagenome 3300044703 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_7BS DOE Joint Genome Institute (JGI) 3300044703 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.3852 -106.1862 1369944849 2173423 406 26 638 40 SRX20649963 Unrestricted 16.78 Metagenome 3300069638 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_001-M-20140715-COMP-DNA1 re-annotation Argonne National Laboratory 3300069638 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 1358409 4237 14 6 26 13 ERX2133923 0.0 Metagenome 3300050516 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation DOE Joint Genome Institute (JGI) 3300050516 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Host-associated Plants Endosphere Roots Unclassified Populus endosphere 35.8444 -83.9599 1298327243 3403313 982 53 1793 75 SRX2748494 0.0 Metagenome 3300029266 *Microbiome Permanent Draft ACE Virus Marine viral community from the Austral Polar Province, Southern Ocean - ACE 064ACD University of Michigan 3300029266 Metagenome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes duhaimem@umich.edu Melissa Duhaime No Environmental Aquatic Unclassified Marine Unclassified Marine -62.3239 147.4162 275652217 474780 144 41 174 61 0.0 Metagenome 3300012149 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ025 MetaG DOE Joint Genome Institute (JGI) 3300012149 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.872 -74.5207 185727887 344470 194 53 326 113 SRX3539459 Unrestricted 0.0 Metagenome 3300030335 *Microbiome Permanent Draft Acid mine drainage microbial biofilm communities from Richmond Mine, California, USA Acid mine drainage biofilm communities from Richmond mine site C75, Iron Mt, CA, USA - AMDC750608V1 University of California, Berkeley 3300030335 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 40.67542 -122.53025 16951062 21294 10 0 14 0 0.0 Metagenome 3300038801 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - ATL2 Michigan State University 3300038801 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 30.306667 -140.93 16943676 41640 5 1 19 2 0.0 Metagenome 3300014258 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleA_D1 DOE Joint Genome Institute (JGI) 3300014258 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.052509 -121.76873 228636343 578200 463 13 955 17 SRX7181929 Unrestricted 0.0 Metagenome 3300020287 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_A100001403 (ERX556018-ERR598969) CEA Genoscope 3300020287 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 34.835 34.8033 129265702 352732 149 11 273 21 0.0 Metagenome 3300001569 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP0960 DOE Joint Genome Institute (JGI) 3300001569 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -27.98 63.25 80805655 164107 125 8 199 12 SRX1982655 Unrestricted 0.0 Metagenome 3300060447 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210611_15_17 DOE Joint Genome Institute (JGI) 3300060447 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 674081887 974028 258 227 332 289 Unrestricted 34.09 Metagenome 3300043767 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Para, Brazil - F5-1A DOE Joint Genome Institute (JGI) 3300043767 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -3.2956 -54.9629 711404302 1741551 289 14 614 26 Unrestricted 9.9 Metagenome 3300021223 *Microbiome Permanent Draft Environmental DNA from river Freshwater microbial communities from Jinzu River in Toyama Prefecture, Japan-20170104_3, 0.02 Toyama Prefectural University 3300021223 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic River Freshwater Unclassified freshwater 36.70387 137.20502 52412925 116699 21 0 31 0 0.0 Metagenome 3300059759 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1548B-3 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059759 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2319 -123.8812 163852881 356777 168 21 260 39 SRX2753630 Unrestricted 0.0 Metagenome 3300027446 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A2a-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300027446 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 48164349 158367 110 0 217 2 SRX1991121 Unrestricted 0.0 Metagenome 3300023113 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #404 DOE Joint Genome Institute (JGI) 3300023113 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 50144479 84500 16 1 23 1 SRX4062626 Unrestricted 82.6 Metagenome 3300046670 *Microbiome Permanent Draft Soil microbial communities from Blodgett Forest Research Station, California, USA Soil microbial communities from Blodgett Forest Research Station, California, USA - BWE201412022H1020 DOE Joint Genome Institute (JGI) 3300046670 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.9122 -120.6612 27905645 55350 124 12 264 21 Unrestricted 25.39 Metagenome 3300001355 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic Microbial community sample from North Sea - COGITO 998_met_08 DOE Joint Genome Institute (JGI) 3300001355 Metagenome Analysis Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Pelagic marine 54.184167 7.9 573739670 1238873 406 107 766 142 SRX802076 Unrestricted 0.0 Metagenome 3300012991 *Microbiome Permanent Draft Pig Viral Communities from oral cavities and ears of healthy adults pigs from Denmark Pig viral communities from oral cavity of healthy adult pig - Individual 0 Autonomous University of Barcelona 3300012991 Metagenome Analysis SPAdes-3.9.1-Linux released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Oral cavity Digestive system Unclassified Pig oral cavity 56.0 10.0 180262498 450561 5 0 16 2 0.0 Metagenome 3300003896 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 m-RNA DAY 01 University of Sao Paulo, Virginia Bioinformatics Institute 3300003896 Metagenome Analysis SoapdeNovo 2 released per PI's request No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 43613951 95821 22 36 62 115 0.0 Metagenome 3300045281 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_1_D DOE Joint Genome Institute (JGI) 3300045281 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 127683049 156652 72 1 92 2 Unrestricted 125.6 Metagenome 3300012488 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.yng.030610 DOE Joint Genome Institute (JGI) 3300012488 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 92538489 254697 205 22 442 44 SRX3527495 Unrestricted 0.0 Metagenome 3300011560 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01054 Weill Cornell Medical College 3300011560 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.68 -73.95 25729735 35211 10 0 21 0 SRX823016 0.0 Metagenome 3300012607 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100535 University of Pennsylvania 3300012607 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17047444 43025 48 12 75 22 SRX756219 0.0 Metagenome 2035918004 *Microbiome Permanent Draft Soil microbial communities from FACE and OTC sites in USA Soil microbial communities from sample at FACE Site 2 North Carolina CO2- DOE Joint Genome Institute (JGI) 2035918004 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes kuske@lanl.gov Cheryl Kuske No Environmental Terrestrial Unclassified Soil Unclassified Soil 36.0 -80.934 124108791 266562 84 0 144 0 Unrestricted 0.0 Metagenome 3300047175 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Frasne, France - Sphagnum magellanicum 5C_MAG_FR DOE Joint Genome Institute (JGI) 3300047175 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 1441048732 2493883 551 133 885 208 SRX14787321 Unrestricted 9.01 Metagenome 3300035049 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B4.5_Sample4.Rodeo5.Well1209 DOE Joint Genome Institute (JGI) 3300035049 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 395402318 654405 305 0 496 0 SRX8353881 Unrestricted 28.22 Metagenome 3300038669 *Microbiome Draft Saline water viral communities of the coast of Qinghai Lake, Qinghai province, China Saline water viral communities of the coast of Qinghai Lake, Qinghai province, China - QHH11 Beijing Novogene Bioinformatics Technology Co., Ltd 3300038669 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes 1054738805@qq.com Chengxiang Gu No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 36.65397041 100.0933312 13014368 33736 43 5 86 7 0.0 Metagenome 3300011872 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00497 Weill Cornell Medical College 3300011872 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.85 -73.86 41647071 72577 25 1 30 1 SRX822466 0.0 Metagenome 3300030228 *Microbiome Permanent Draft Acid mine drainage microbial biofilm communities from Richmond Mine, California, USA Acid mine drainage biofilm communities from Richmond mine site C10, Iron Mt, CA, USA - AMDC101106 University of California, Berkeley 3300030228 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 40.67542 -122.53025 30367731 40927 22 3 29 7 0.0 Metagenome 3300008142 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159814214 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008142 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 248384959 338891 184 0 219 0 0.0 Metagenome 3300004887 *Microbiome Permanent Draft Ecklonia radiata associated microbial communities from Long Bay, Malabar Australia Ecklonia radiata associated microbial communities from Long Bay, Malabar Australia - B2 University of New South Wales 3300004887 Metagenome Analysis idba-ud released per JGI data release policy Yes Yes z.qiu@student.unsw.edu.au Zhiguang Qiu No Host-associated Algae Ectosymbionts Red algae Unclassified Ecklonia radiata associated 72605166 111842 53 22 62 29 0.0 Metagenome 3300013552 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Human oral microbial communities from various locations - University of British Columbia - SCG28 University of British Columbia 3300013552 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Unclassified Human oral 778516 1937 3 0 4 0 SRX143137 0.0 Metagenome 3300070875 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_005-M-20190715-COMP-DNA2 Battelle Memorial Institute 3300070875 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.149339 -99.251928 7.34-8.22 24134306 71565 60 3 97 7 0.0 Metagenome 3300038687 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Realigned salt marsh sediment microbial communities from Mersea Island, United Kingdom - W MIRM 3A University of York 3300038687 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Realigned salt marsh sediment 51.79675 0.921833 35227025 94107 76 0 155 1 0.0 Metagenome 3300026923 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN117 (SPAdes) DOE Joint Genome Institute (JGI) 3300026923 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 39.23550963 -121.2836963 1271366 4438 24 1 45 3 SRX1986448 Unrestricted 0.0 Metagenome 3300038408 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Sediment microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_West_2 DOE Joint Genome Institute (JGI) 3300038408 Metagenome Analysis metaspades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Wetlands Marine Sediment sediment 26.469 -80.4434 2204419926 3433276 742 8 1209 14 SRX9405591 Unrestricted 13.44 Metagenome 3300032356 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS50 DOE Joint Genome Institute (JGI) 3300032356 Metagenome Analysis spades v. 3.13.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5341 -110.798 514475468 937802 285 5 401 7 SRX6411845 Unrestricted 57.51 Metagenome 3300027505 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027505 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 248660443 593855 199 44 392 67 SRX3312026 Unrestricted 0.0 Metagenome 3300010316 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_DNA (version 2) DOE Joint Genome Institute (JGI) 3300010316 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes bcampb7@clemson.edu Barbara Campbell Yes 29703736 Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 38.0754 -76.1533 460933049 950662 262 201 406 298 SRX2526636 Unrestricted 0.0 Metagenome 3300053130 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere DOE Joint Genome Institute (JGI) 3300053130 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.587786 -123.193893 815647059 1444537 302 87 453 148 Unrestricted 9.19 Metagenome 3300045152 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_1_B DOE Joint Genome Institute (JGI) 3300045152 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 151877596 176187 92 1 105 2 Unrestricted 121.89 Metagenome 3300014572 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS65_6 University of Hohenheim 3300014572 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 112530702 187957 84 0 142 0 0.0 Metagenome 3300026344 *Microbiome Permanent Draft Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 C5 DOE Joint Genome Institute (JGI) 3300026344 Metagenome Analysis spades v. 3.11.1 Yes Yes ccraft@indiana.edu Chris Craft No Environmental Aquatic Wetlands Freshwater Sediment sediment 31.3377 -81.4644 61423343 191349 260 22 503 24 SRX4796405 Unrestricted 6.03 Metagenome 3300065647 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 823 in Enchant, Alberta, Canada - S00JY_0342 Microbiome Insights 3300065647 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 50.1313992 -112.190483 21958645 33112 32 0 70 0 0.0 Metagenome 3300001587 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP2634 DOE Joint Genome Institute (JGI) 3300001587 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 20.0 -52.63 70795660 167932 91 1 172 1 SRX1981964 Unrestricted 0.0 Metagenome 3300042154 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME25May2000-rr0732 DOE Joint Genome Institute (JGI) 3300042154 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 604611904 1041609 195 29 282 38 Unrestricted 19.15 Metagenome 3300026203 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV84 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026203 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Unclassified Marine Unclassified Marine 352594400 881117 286 14 454 37 SRX2781860 Unrestricted 0.0 Metagenome 3300014860 *Microbiome Permanent Draft Indoor microbial communities from home and occupant surfaces in Illinois, USA Indoor microbial communities from home surfaces in Illinois, USA - Bathroom Door Knob - House_04a-Bathroom_Door_Knob_Day4 University of Chicago 3300014860 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Built environment Unclassified House Unclassified Indoor 41.9 -87.6 3671073 8654 23 0 34 0 SRX661137 0.0 Metagenome 3300023301 *Microbiome Permanent Draft Hypersaline microbial communities from Lake Vida, Antarctica Hypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300023301 Metagenome Analysis spades v. 3.11.1 Yes Yes alison@dri.edu Alison Murray No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline -77.38861 161.931111 291778277 615900 70 2 95 0 SRX3181484 Unrestricted 0.0 Metagenome 3300001084 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 DOE Joint Genome Institute (JGI) 3300001084 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 93463616 262550 110 18 246 21 SRX3312034 Unrestricted 0.0 Metagenome 3300071046 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_026-M-20200708-COMP-DNA1 3300071046 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 10872494 34720 45 4 91 9 0.0 Metagenome 3300022837 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1699 DOE Joint Genome Institute (JGI) 3300022837 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 93765159 196498 41 3 77 4 SRX4397914 Unrestricted 31.36 Metagenome 3300045993 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Microbial mat bacterial communities from wetland, North Slope, Alaska, United States - OKS_WetSedge1_19June2019 DOE Joint Genome Institute (JGI) 3300045993 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes demerson@bigelow.org David Emerson No Environmental Aquatic Wetlands Freshwater Unclassified wetland microbial mat 68.6727 -149.1378 1832029598 3033133 1082 324 1656 475 Unrestricted 16.42 Metagenome 3300029901 *Microbiome Permanent Draft Cryoconite microbial communities around the Greenland ice sheet Cryoconite microbial communities from ice sheet in Kangerlussuaq, Greenland - KAN_P-B3a DMAC, Technical University of Denmark 3300029901 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Ice Freshwater Cryoconite Cryconite 67.09 -50.0 331649564 607153 114 5 193 11 SRX2579861 0.0 Metagenome 3300012283 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00604 Weill Cornell Medical College 3300012283 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.78 -73.95 74424770 128730 28 0 58 0 SRX822571 0.0 Metagenome 7000000165 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 764042746 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000165 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2698628 3582 0 0 0 0 0.0 Metagenome 3300030423 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces viral communities from adenoma patient in Toronto, Canada - MG100043 University of Michigan 3300030423 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 43.65 -79.38 3814820 7478 5 0 6 0 0.0 Metagenome 3300005156 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F01 DOE Joint Genome Institute (JGI) 3300005156 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 71021416 108191 150 0 212 0 SRX3195088 Unrestricted 0.0 Metagenome 3300042638 *Microbiome Draft Permafrost soil microbial communities from Adventdalen on Svalbard, Norway Permafrost soil microbial communities from Adventdalen on Svalbard, Norway - Sample6 Baseclear 3300042638 Metagenome Analysis Velvet v. 3.3 released by JGI data releasing policy No Yes thiele_biology@gmx.de Stefan Thiele No Environmental Terrestrial Unclassified Soil Permafrost Permafrost soil 78.18301 15.91776 1.35 25036047 78864 21 1 42 2 0.0 Metagenome 3300049898 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume viral communities from North Pacific Ocean - CTD-AT42-06-007-2500m-0.03 v DOE Joint Genome Institute (JGI) 3300049898 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 9.83807 -104.29118 28936667 87790 16 7 27 7 Restricted 403.07 Metagenome 3300042373 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME22Jun2012-rr0426 DOE Joint Genome Institute (JGI) 3300042373 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 719745642 1182621 242 23 359 47 Unrestricted 24.64 Metagenome 3300070621 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_003-M-20200716-COMP-DNA1 3300070621 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 40918793 123924 68 5 128 8 0.0 Metagenome 3300007625 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1546B-02 DOE Joint Genome Institute (JGI) 3300007625 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2311 -123.8825 340804846 653345 323 17 497 30 SRX2753623 Unrestricted 0.0 Metagenome 3300000788 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 29JUL2008 epilimnion DOE Joint Genome Institute (JGI) 3300000788 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300030302 *Microbiome Permanent Draft Coastal intertidal sediment microbial communities near Norwich, United Kingdom Coastal intertidal sediment microbial communities near Norwich, United Kingdom - DMSP12 University of Warwick 3300030302 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Intertidal zone Marine Sediment Coastal intertidal sediment 52.965278 0.925833 60012490 119756 25 6 60 10 0.0 Metagenome 3300048693 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lake Yojoa, Honduras - Yojoa_01_2020_R_meta (version 2) DOE Joint Genome Institute (JGI) 3300048693 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Lake Freshwater Unclassified Freshwater 14.9144 -88.0205 788219536 1359337 376 118 614 193 Unrestricted 0.0 Metagenome 7000000118 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 158944319 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000118 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 104088236 185172 0 0 0 0 0.0 Metagenome 3300029221 *Microbiome Permanent Draft Synthetic microbial community for library methods comparison from University of Liverpool, United Kingdom Synthetic microbial communities for library methods comparison from University of Liverpool, United Kingdom - Mg12 University of Liverpool 3300029221 Metagenome Analysis released Yes Yes No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 53.405936 -2.9677609 135458860 188460 95 0 102 0 ERX1325894 0.0 Metagenome 3300006120 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH25Aug08 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006120 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 335647672 913600 253 31 409 69 SRX2565523 Unrestricted 0.0 Metagenome 3300037097 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 P2 30-34 DOE Joint Genome Institute (JGI) 3300037097 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0472 441337954 701523 122 3 184 3 SRX8138666 Unrestricted 16.79 Metagenome 3300070297 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_001-M-20180924-COMP-DNA1 3300070297 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 59996411 163142 94 2 157 3 0.0 Metagenome 3300026669 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN619 (SPAdes) DOE Joint Genome Institute (JGI) 3300026669 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 5436863 18751 40 1 66 0 SRX1986992 Unrestricted 0.0 Metagenome 3300026136 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45B (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026136 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 182386245 434738 188 214 300 384 SRX3194967 Unrestricted 0.0 Metagenome 3300005707 *Microbiome Permanent Draft Freshwater microbial communities from Lake Kinneret, Israel Aquatic microbial communities from Lake Kinneret, Israel - sample 5 Macrogen 3300005707 Metagenome Analysis Unkonwn No Yes beja@tx.technion.ac.il Beja O No Environmental Aquatic Lentic Freshwater Unclassified Freshwater 32.7872 35.6176 41093 40 1 0 1 0 0.0 Metagenome 3300001100 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 DOE Joint Genome Institute (JGI) 3300001100 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 24452521 73376 105 28 168 36 SRX3312035 Unrestricted 0.0 Metagenome 2119805012 *Microbiome Draft Soil microbial communities from FACE and OTC sites in USA Soil microbial communities from sample at FACE Site NTS_067 Nevada Test Site DOE Joint Genome Institute (JGI) 2119805012 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes kuske@lanl.gov Cheryl Kuske No Environmental Terrestrial Sand Soil Desert Soil 36.766667 -115.95 390792833 1036364 601 25 1044 0 Unrestricted 0.0 Metagenome 3300045039 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Plains ecozone, Canada - Lake 04-621 Genome Quebec 3300045039 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 61.930612 -116.520168 1259116384 2890258 737 192 1328 310 0.0 Metagenome 3300024314 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 70D DOE Joint Genome Institute (JGI) 3300024314 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 252570215 536857 166 28 246 41 SRX4472907 Unrestricted 19.13 Metagenome 3300026687 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN413 (SPAdes) DOE Joint Genome Institute (JGI) 3300026687 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Soil 44.20517707 -122.1284473 10439355 33244 40 2 75 4 SRX3311835 Unrestricted 0.0 Metagenome 3300013919 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00722 Weill Cornell Medical College 3300013919 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -74.01 22303744 24891 13 0 17 0 SRX822689 0.0 Metagenome 2088090024 *Microbiome Permanent Draft Rumen microbial communities of musk oxen from Alaska Sample MXSH National Research Council of Canada 2088090024 Metagenome Analysis released per Rekha No Yes robert.forster@agr.gc.ca Robert Forster No Host-associated Mammals Stomach Digestive system Rumen Rumen 64.880776 -147.869984 90948594 245960 250 3 477 0 0.0 Metagenome 3300037578 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C7-7A DOE Joint Genome Institute (JGI) 3300037578 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 732609014 2089974 816 19 1540 39 SRX9166514 Unrestricted 6.09 Metagenome 3300028475 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_17JUL2017_LD1 DOE Joint Genome Institute (JGI) 3300028475 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 69132370 128925 20 36 27 59 SRX5345827 Unrestricted 19.97 Metagenome 3300038344 *Microbiome Permanent Draft Terrestrial microbial communites from a soil warming plot in Okalahoma, USA Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T4.rep1 Georgia Institute of Technology 3300038344 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial 34.975667 -97.519 3144555 9694 26 3 66 5 SRX352037 0.0 Metagenome 3300056852 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Activated sludge microbial communities from bioreactor in WWTP, Madison, WI, USA - RS_2021-08-26_SampleC (version 2) DOE Joint Genome Institute (JGI) 3300056852 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.03331 -89.35633 143794861 169771 73 17 99 18 Unrestricted 0.0 Metagenome 3300010231 *Microbiome Permanent Draft Soil microbial communities from Bangor area, North Wales, UK enriched with cashew seed oil Soil microbial communities from Bangor area, North Wales, UK enriched with cashew seed oil - week5, replicate 1 Fidelity Systems Inc 3300010231 Metagenome Analysis Phred/Phrap/Consed v. 23.0 released per JGI data release policy Yes Yes stepan.toshchakov@gmail.com Stepan Toshchakov No Engineered Lab enrichment Unclassified Unclassified Unclassified soil 53.24 -4.01 187358437 412911 73 10 136 15 0.0 Metagenome 3300003910 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from the University of Notre Dame, USA, of lakes that contribute to methane emissions Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW DOE Joint Genome Institute (JGI) 3300003910 Metagenome Analysis Yes Yes sjones20@nd.edu Stuart Jones No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 41.7 -86.23 412813261 985914 697 129 1083 196 SRX2576534 Unrestricted 0.0 Metagenome 3300022063 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022063 Metagenome Analysis spades v. 3.11.1-check Yes Yes bcampb7@clemson.edu Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 38.8455 -76.4191 130142268 376949 8 0 16 0 SRX3301745, SRX2753457, SRX3301744 Unrestricted 0.0 Metagenome 3300064953 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 739 in Chauvin, Alberta, Canada - S00JY_0631 Microbiome Insights 3300064953 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.4340656 -110.170687 252954721 358051 92 4 143 6 0.0 Metagenome 3300000389 *Microbiome Permanent Draft Porifera Rhopaloeides odorabile microbial communities from Palm Island, Great Barrier Reef Rhopaloeides odorabile microbial communities from Palm Island, Great Barrier Reef, Australia - replicate 2 J. Craig Venter Institute 3300000389 Metagenome Analysis No Yes t.thomas@unsw.edu.au Torsten Thomas Yes 22699508 Host-associated Porifera Unclassified Sponge Unclassified Porifera Rhopaloeides odorabile -18.68 146.58 19482316 43619 32 0 59 1 0.0 Metagenome 3300025322 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025322 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.534762 -107.782602 1914779833 3917261 1298 12 2321 11 SRX1991818 Unrestricted 0.0 Metagenome 3300040345 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Jornada LTER, Desert Southwest, NM, USA - JORN_005-M-20170808-COMP-DNA1 Battelle Memorial Institute 3300040345 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Desert Terrestrial soil 32.59068 -106.84254 4407868 12743 11 0 32 0 0.0 Metagenome 3300027532 *Microbiome Permanent Draft Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran, Adriatic Sea Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge mesohyl, lysed by proteinase K digestion (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027532 Metagenome Analysis spades v. 3.11.1 Yes Yes ute.hentschel@uni-wuerzburg.de Ute Hentschel No Host-associated Porifera Unclassified Sponge Unclassified Host-associated 45.5099 13.56 458766452 667127 130 14 180 24 SRX4919575 Unrestricted 0.0 Metagenome 3300022751 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L212-509R-1 DOE Joint Genome Institute (JGI) 3300022751 Metagenome Analysis spades v. 3.11.1-check Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 677246339 1431719 690 138 1070 228 SRX4801556 Unrestricted 10.12 Metagenome 3300022324 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Garden Lake, Rottnest Island (WA - Australia) - GL1GP1 JM43 AGRF 3300022324 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.995604 115.536873 25217684 50366 28 0 56 0 0.0 Metagenome 3300011647 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00499 Weill Cornell Medical College 3300011647 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.86 -73.86 28522545 44975 18 0 22 0 SRX822468 0.0 Metagenome 3300045883 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Geyser Creek, Yellowstone National Park, WY, United States - MSUNE_GC_07 University of Wisconsin, Madison 3300045883 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.69067 -110.72977 139500217 203056 75 2 102 0 0.0 Metagenome 3300005071 *Microbiome Permanent Draft Termite gut microbial communities from Australia Porotermes gut microbial communities from Mount Glorious, Queensland, Australia - TN01 University of Queensland 3300005071 Metagenome Analysis CLC released per JGI data release policy No Yes nurdyana.abdulrahman@uqconnect.edu.au, nurdyana.abdul.rahman@sgh.com.sg Abdul Rahman, Nurdyana Abdul Rahman No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Porotermes gut -27.330504 152.763993 582926549 997705 147 2 286 6 0.0 Metagenome 3300003614 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypoxic/sulfidic aquatic microbial communities from Monarch Geyser, Yellowstone National Park, USA - MG v3 (version 5) DOE Joint Genome Institute (JGI) 3300003614 Metagenome Analysis released based on JGI ITS Yes Yes jim.fredrickson@pnnl.gov, jim.fredrickson@pnnl.gov; binskeep@montana.edu Jim Fredrickson, Jim Fredrickson; William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hypoxic/sulfidic aquatic 44.376 -110.69 837787823 1538752 601 38 1081 0 SRX2553563 Unrestricted 0.0 Metagenome 3300037181 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-2-S DOE Joint Genome Institute (JGI) 3300037181 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 710997328 1295382 272 27 426 50 SRX8137206 Unrestricted 11.02 Metagenome 3300049988 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Leaf microbial communities from farm grass in Deerfield, Massachusetts, United States - Ryegrass_Phyllosphere_control5 (version 2) DOE Joint Genome Institute (JGI) 3300049988 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 42.4788 -72.5788 1344666763 2675940 773 319 1018 490 Restricted 0.0 Metagenome 3300050023 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 E2 20-24 DOE Joint Genome Institute (JGI) 3300050023 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.0467 590733981 885989 227 3 326 2 Restricted 14.22 Metagenome 3300049491 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Arizona, USA - marshallgulch_2019_sed_WHONDRS-S19S_0035 DOE Joint Genome Institute (JGI) 3300049491 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 32.42735 -110.757838 559430158 1172485 380 18 690 21 Unrestricted 14.15 Metagenome 3300040270 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountain National Park, Central Plains, CO, USA - RMNP_013-O-20170807-COMP-DNA1 Battelle Memorial Institute 3300040270 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.27591 -105.54592 7524353 17487 17 1 38 0 0.0 Metagenome 3300025403 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH23Jun09 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025403 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 147592602 299562 96 44 151 59 SRX2566712 Unrestricted 0.0 Metagenome 3300034177 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Sediment microbial communities from East River floodplain, Colorado, United States - 17_j17 DOE Joint Genome Institute (JGI) 3300034177 Metagenome Analysis metaspades v. 3.13.0 Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Aquatic Sediment Floodplain Unclassified sediment 38.9229 -106.9499 777187732 1810280 523 4 959 6 SRX7630721 Unrestricted 7.72 Metagenome 3300007273 *Microbiome Permanent Draft Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia - TJ14 time point Australian Centre for Ecogenomics 3300007273 Metagenome Analysis CLC released per JGI data release policy No Yes crinke@lbl.gov Christian Rinke No Environmental Aquatic Coastal Marine Unclassified marine surface water -34.1192 151.2267 94655182 133731 41 1 56 1 0.0 Metagenome 2010484004 *Microbiome Permanent Draft Acid Mine Drainage (AMD) microbial and viral communities from Richmond mine, Iron Mountain, CA Acid Mine Drainage (ARMAN) microbial communities from Richmond mine, Iron Mountain, CA, sample from Ultra Back A BS v1 DOE Joint Genome Institute (JGI), University of California, Berkeley 2010484004 Metagenome Analysis No Yes jill@eps.berkeley.edu, jbanfield@berkeley.edu Banfield, Jillian F., Jill Banfield Yes 14961025 Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid Mine Drainage (AMD) 40.678099 -122.515068 0.83-1.28 20656958 25801 0 0 0 0 Unrestricted 0.0 Metagenome 3300008508 *Microbiome Permanent Draft Freshwater microbial communities from catchments in Singapore Freshwater microbial communities from catchments in Singapore - Site BI Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300008508 Metagenome Analysis CLC genomics workbench 8 released per JGI data release policy No Yes erinscm@nus.edu.sg Charmaine Ng No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 1.3 103.8 101759895 261533 88 28 165 46 0.0 Metagenome 3300024521 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Amundsen Gulf, Northwest Territories, Canada - Cases_109_1 DOE Joint Genome Institute (JGI) 3300024521 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Gulf Marine Unclassified seawater 70.66 -123.0 1342396925 3435266 871 36 1443 52 SRX4480532 Unrestricted 9.52 Metagenome 3300020603 *Microbiome Permanent Draft Freshwater microbial communities from Lake Tanganyika, Tanzania Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015035 Kigoma Deep Cast 150m DOE Joint Genome Institute (JGI) 3300020603 Metagenome Analysis spades v. 3.10.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater lake -4.9054 29.4853 1892014684 3464415 1009 70 1590 103 SRX3983987 Unrestricted 25.04 Metagenome 3300046481 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvCe-C(2) 1-5 DOE Joint Genome Institute (JGI) 3300046481 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0434 159091090 261495 123 6 165 8 Restricted 14.44 Metagenome 3300033157 *Microbiome Permanent Draft Human fecal microbial communities from Ikoma, Japan Human adult male fecal microbial communities from Ikoma, Japan - F1-S The University of Tokyo 3300033157 Metagenome Analysis PCAP v. 1 No Yes masahira.hattori@riken.jp Masahira Hattori No Host-associated Mammals: Human Large intestine Digestive system Fecal Human adult male fecal 34.7321 135.7306 38008638 57703 71 0 108 0 0.0 Metagenome 3300031608 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #1 DOE Joint Genome Institute (JGI) 3300031608 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5735 77.9231 421902818 965406 225 348 328 547 SRX5650059 Unrestricted 14.53 Metagenome 3300013294 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A3_65cm_0M University of Tennessee 3300013294 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 231897525 551343 96 1 205 4 SRX710567 0.0 Metagenome 3300000367 *Microbiome Draft Alkaline sediment microbial communities from Soda lakes and Soda Solonchak soils Alkaline soda soil microbial communities from Kulunda Steppe, Russia - 2KS_010_SOIL DOE Joint Genome Institute (JGI) 3300000367 Metagenome Analysis released based on JGI ITS Yes Yes g.muijzer@uva.nl Gerard Muyzer No Environmental Aquatic Alkaline Non-marine Saline and Alkaline Sediment Alkaline sediment 52.1 79.14 488672021 1166904 637 11 1107 17 Unrestricted 0.0 Metagenome 3300054978 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_SEK2_2_to_SEK2 DOE Joint Genome Institute (JGI) 3300054978 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.245 1064797353 1917697 603 221 877 339 Unrestricted 0.0 Metagenome 3300013473 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00524 Weill Cornell Medical College 3300013473 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.97 8981573 14029 8 0 13 0 SRX822493 0.0 Metagenome 3300037252 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0817U12re DOE Joint Genome Institute (JGI) 3300037252 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.039 279188415 464941 181 2 317 6 SRX8670441 Unrestricted 14.94 Metagenome 3300026801 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A2a-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026801 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 26665488 86913 101 2 197 2 SRX1991197 Unrestricted 0.0 Metagenome 3300009386 *Microbiome Permanent Draft Microbial communities in swimming pool backwashes Microbial communities from sand-filter backwash in Singapore swimming pools - BD-1 Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300009386 Metagenome Analysis megahit released per JGI data release policy Yes Yes martintayqx@gmail.com Martin Tay No Engineered Built environment Unclassified Unclassified Unclassified Swimming pool sandfilter backwash 1.28967 103.85007 168410501 309533 71 41 60 66 0.0 Metagenome 2051774005 *Microbiome Permanent Draft Bovine rumen microbial communities from New Zealand Bovine rumen microbial communities from New Zealand - Cow723Adherent AgResearch Limited 2051774005 Metagenome Analysis released per JGI data release policy No Yes christina.moon@agresearch.co.nz Christina Moon No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -40.35 175.61 60002018 148992 0 0 0 0 0.0 Metagenome 3300049055 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - D20_B_BS (version 2) DOE Joint Genome Institute (JGI) 3300049055 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 221376422 504773 458 11 953 20 Unrestricted 0.0 Metagenome 3300027534 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepC_8d DOE Joint Genome Institute (JGI) 3300027534 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 262981280 588308 164 11 213 15 SRX5245247 Unrestricted 16.17 Metagenome 3300025063 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Sandy's Spring West, USA to study Microbial Dark Matter (Phase II) - SSWsed_matched (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025063 Metagenome Analysis spades v. 3.11.1 Yes Yes brian.hedlund@unlv.edu; rstepanauskas@bigelow.org Brian Hedlund; Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring 40.653 -119.3749 7.03 130607346 224776 91 0 116 0 SRX2753869 Unrestricted 0.0 Metagenome 3300053173 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S17_B_D45 hydrophilic DOE Joint Genome Institute (JGI) 3300053173 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 261644714 435481 236 1 301 3 Restricted 0.0 Metagenome 3300022322 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL2BM1 JM28 AGRF 3300022322 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.006972 115.520541 24527201 47952 24 2 33 1 0.0 Metagenome 3300041010 *Microbiome Permanent Draft Industrial fuel microbial communities from aircraft samples near Hamburg, Germany Industrial fuel microbial communities from aircraft samples near Hamburg, Germany - 180914_BF_01 HPI Heinrich-Pette-Institut 3300041010 Metagenome Analysis MetaSpades v. 3.1 released by JGI data releasing policy No Yes wolfgang.streit@uni-hamburg.de; ines.krohn@uni-hamburg.de Wolfgang Streit; Ines KROHN No Engineered Industrial production Unclassified Engineered product Unclassified Industrial fuel 53.338 9.5152 80776990 134575 20 7 40 22 0.0 Metagenome 3300025751 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025751 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 505439897 1122294 397 109 583 207 SRX2888119 Unrestricted 0.0 Metagenome 3300025324 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025324 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 2665805580 5913740 1745 9 3098 26 SRX1990945 Unrestricted 0.0 Metagenome 3300042883 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2005-rr0354 DOE Joint Genome Institute (JGI) 3300042883 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1098598960 1660537 401 152 521 226 Unrestricted 18.24 Metagenome 3300049647 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Mesophilic digester sludge microbial communities from biogas plant in Weichs, Bavaria, Germany - PB8_MG_220218 DOE Joint Genome Institute (JGI) 3300049647 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 48.39537892 11.44760761 791874460 1252999 900 9 1202 16 Unrestricted 24.74 Metagenome 3300032275 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom DOE Joint Genome Institute (JGI) 3300032275 Metagenome Analysis spades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5106 -110.3566 2388185029 5830942 1860 87 3129 159 SRX6379482 Unrestricted 8.42 Metagenome 3300000135 *Microbiome Draft Marine microbial communities from chronically polluted sediments in four geographic locations Marine microbial communities from chronically polluted sediments in Antarctica -King George Island site S1 sample ANT 03_9.5m DOE Joint Genome Institute (JGI) 3300000135 Metagenome Analysis released based on JGI ITS Yes Yes hdionisi@cenpat.edu.ar Hebe Dionisi No Environmental Aquatic Intertidal zone Marine Sediment Marine -62.230512 -58.656117 107809070 280781 336 41 572 47 Unrestricted 0.0 Metagenome 3300025943 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLA_D2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025943 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.209923 -122.033409 146313507 320807 248 1 405 5 SRX7142969 Unrestricted 0.0 Metagenome 3300011988 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S04-02-D University of California, Los Angeles 3300011988 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 227536978 385336 209 1 314 3 SRX858931 0.0 Metagenome 3300006976 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 158499257 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300006976 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 2525281 5582 5 0 6 0 SRX023577, SRX023578 0.0 Metagenome 3300066291 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_003-O-20170718-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066291 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 10956645 33322 80 26 131 51 0.0 Metagenome 3300011491 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01102 Weill Cornell Medical College 3300011491 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.66 -73.95 16586764 28050 16 0 32 0 SRX823057 0.0 Metagenome 3300029848 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37133 Beijing Genomics Institute (BGI) 3300029848 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 226297825 308352 196 0 277 0 0.0 Metagenome 3300022403 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Lake Baghdad, Rottnest Island (WA - Australia) - LBBM3 JM69 AGRF 3300022403 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.994794 115.523776 41804847 80747 39 2 61 4 0.0 Metagenome 3300050362 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Rock endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - YNP_Endolithic_3 DOE Joint Genome Institute (JGI) 3300050362 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rock 44.7986 -110.7207 446845277 651103 199 36 241 51 Unrestricted 210.25 Metagenome 3300027450 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G07K3-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300027450 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 17370141 57508 57 1 110 0 SRX1991263 Unrestricted 0.0 Metagenome 7000000459 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 158883629 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000459 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 33225381 43797 0 0 0 0 0.0 Metagenome 3300023259 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 20-24 DOE Joint Genome Institute (JGI) 3300023259 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3535 19.0472 197532099 478313 146 8 212 15 SRX4415345, SRX8128074 Unrestricted 0.0 Metagenome 3300009957 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 4 Autonomous University of Barcelona 3300009957 Metagenome Analysis SPAdes-3.8.1-Linux released per JGI data release policy Yes Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 5826987 10737 6 1 5 0 0.0 Metagenome 3300009665 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_20_10 DOE Joint Genome Institute (JGI) 3300009665 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 663245490 1297931 386 53 666 109 SRX3005975 Unrestricted 0.0 Metagenome 3300027261 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1563A-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027261 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2103 -123.7517 148284026 342860 167 32 293 50 SRX2753760 Unrestricted 0.0 Metagenome 3300037254 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_C2 DOE Joint Genome Institute (JGI) 3300037254 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 352269797 781949 178 32 306 60 SRX8397088 Unrestricted 6.69 Metagenome 3300009618 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_16_100 DOE Joint Genome Institute (JGI) 3300009618 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 328484557 562383 167 1 248 2 SRX3003646 Unrestricted 0.0 Metagenome 3300028196 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m DOE Joint Genome Institute (JGI) 3300028196 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified marine 48.6 -123.5 663588140 1309741 348 90 486 127 SRX5244623 Unrestricted 16.26 Metagenome 3300069281 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_006-O-20210804-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069281 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tundra Soil Unclassified Terrestrial soil 68.622127 -149.280182 4057418107 9034481 1896 319 3390 515 0.0 Metagenome 3300033820 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-2-D DOE Joint Genome Institute (JGI) 3300033820 Metagenome Analysis spades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 252781025 584167 241 2 434 6 SRX8137902, SRX8137901 Unrestricted 0.0 Metagenome 3300024279 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK33 DOE Joint Genome Institute (JGI) 3300024279 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 176699537 434602 244 17 454 28 SRX4547586 Unrestricted 8.71 Metagenome 3300014701 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00560 Weill Cornell Medical College 3300014701 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.66 -73.95 51476548 83096 30 2 44 1 SRX822527 0.0 Metagenome 3300013292 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Aquatic prokaryotic and eukaryotic communities from a canal in New York, USA: aquatic canal water -GCSS-08 Weill Cornell Medical College 3300013292 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Unclassified Canal Unclassified Aquatic canal 40.67 -73.98 80570099 238083 162 12 359 16 SRX823482 0.0 Metagenome 3300046378 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA031-BCT DOE Joint Genome Institute (JGI) 3300046378 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6779 -83.4786 343555804 894409 201 30 424 50 Unrestricted 8.64 Metagenome 3300053085 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere DOE Joint Genome Institute (JGI) 3300053085 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1213 -123.2709 1313891770 2191005 472 49 793 65 Unrestricted 0.0 Metagenome 3300025837 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG02_land_8/20/14_3.00 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025837 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 673750713 1135540 576 6 878 13 SRX3348123 Unrestricted 0.0 Metagenome 3300042993 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 DOE Joint Genome Institute (JGI) 3300042993 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.201 -97.9447 685479437 1873892 716 47 1252 82 Unrestricted 7.71 Metagenome 3300029579 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P017V1 Beijing Genomics Institute (BGI) 3300029579 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 197186014 265406 179 0 238 0 0.0 Metagenome 3300015283 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_12JUL2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015283 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 128499668 233654 4 32 10 43 SRX3923568 Unrestricted 10.57 Metagenome 3300002156 *Microbiome Permanent Draft Saline desert soil microbial communities from Kutch, Gujarat, India Saline desert soil microbial communities from Kutch, Gujarat, India - S2 3300002156 Metagenome Analysis Released per request from Aanal Pandit - March 31 2014 No Yes ggi_gsbtm@yahoo.com Snehal Bagatharia No Environmental Terrestrial Unclassified Soil Desert Saline desert soil 23.7925 71.008 296602962 1821882 1368 104 2654 172 0.0 Metagenome 3300001082 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 DOE Joint Genome Institute (JGI) 3300001082 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 35803705 86245 104 17 176 27 SRX3312368 Unrestricted 0.0 Metagenome 3300040106 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONZ_043-M-20160714-COMP-DNA1 Battelle Memorial Institute 3300040106 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.10077 -96.56309 12065565 36683 44 4 94 5 0.0 Metagenome 3300025511 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR11_8B_AprC (SPAdes) DOE Joint Genome Institute (JGI) 3300025511 Metagenome Analysis spades v. 3.11.1 Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 67092400 109892 52 0 84 0 SRX3318253 Unrestricted 0.0 Metagenome 3300011898 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00588 Weill Cornell Medical College 3300011898 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.72 -73.99 50602825 82529 30 0 56 0 SRX822555 0.0 Metagenome 3300013645 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100765 University of Pennsylvania 3300013645 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 10098843 17481 8 3 12 4 SRX756085 0.0 Metagenome 3300029441 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 029_10_30_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029441 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 272983430 345237 296 0 394 0 0.0 Metagenome 3300014077 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Vietnam to Iowa, USA - VN3 Iowa State University 3300014077 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 1986689 3183 0 1 0 0 SRX1150318 0.0 Metagenome 3300043680 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 427-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043680 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9756 -107.066 770118346 1917614 451 24 850 33 Unrestricted 6.92 Metagenome 3300061149 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IF5SW no PMA treatment Jet Propulsion Laboratory, California Institute of Technology 3300061149 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 40587318 84595 8 15 24 21 SRX3808532, SRX2249363, SRX3808522, SRX2249362 0.0 Metagenome 3300006857 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B host_MetaG DOE Joint Genome Institute (JGI) 3300006857 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes binskeep@montana.edu William Inskeep, William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.7219 -110.7021 120891084 345128 105 0 179 0 SRX2916801 Unrestricted 0.0 Metagenome 3300030243 *Microbiome Permanent Draft Coastal intertidal sediment microbial communities near Norwich, United Kingdom Coastal intertidal sediment microbial communities near Norwich, United Kingdom - DMSP7 University of Warwick 3300030243 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Intertidal zone Marine Sediment Coastal intertidal sediment 52.965278 0.925833 40566668 77925 19 2 24 1 0.0 Metagenome 3300020395 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000427 (ERX555987-ERR599133) CEA Genoscope 3300020395 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -8.7006 -17.9915 859085149 2251294 459 32 928 73 0.0 Metagenome 3300030304 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from healthy individual in Toronto, Canada - MG100153 University of Michigan 3300030304 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 43.65 -79.38 46498197 90926 75 0 130 0 0.0 Metagenome 3300000879 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and P2 (3) DOE Joint Genome Institute (JGI) 3300000879 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 61452488 100147 45 0 90 0 SRX3311623 Unrestricted 0.0 Metagenome 3300048938 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_4_F (version 2) DOE Joint Genome Institute (JGI) 3300048938 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 138342857 162191 90 1 101 2 Restricted 0.0 Metagenome 3300069330 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_002-O-20160809-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069330 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 20585715 63891 49 13 101 21 0.0 Metagenome 3300002707 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A3-11 DOE Joint Genome Institute (JGI) 3300002707 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 134354 461 24 0 36 0 SRX1991132 Unrestricted 0.0 Metagenome 3300024312 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Colum_RepA_8d DOE Joint Genome Institute (JGI) 3300024312 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 160861439 342153 161 14 225 15 SRX4547498 Unrestricted 13.57 Metagenome 3300009876 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA11 University of New South Wales 3300009876 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 34075755 52967 25 2 28 1 0.0 Metagenome 3300040757 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P11_D2 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300040757 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 380029092 623195 135 50 230 66 SRX9635094, SRX9635095 Unrestricted 0.0 Metagenome 3300042039 *Microbiome Permanent Draft Mollusc gills microbial communities from various hydrothermal vent in Atlantic Ocean Mollusc gills microbial communities from Lucky Strike-Montsegur hydrothermal vent, Atlantic Ocean - BazoSym_LS-MS_1_1048F Max Planck Institute for Marine Microbiology 3300042039 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 37.28806 -32.27557 8664676 11618 2 1 4 1 ERX3367193 0.0 Metagenome 3300039110 *Microbiome Permanent Draft Seagrass microbial communities from Seahorse Key, Florida, USA Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 University of Florida 3300039110 Metagenome Analysis Megahit v. 1.1.4 released by JGI data releasing policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Plants Unclassified Roots Unclassified seagrass root 29.23 -83.735 156536952 194563 28 3 30 5 0.0 Metagenome 3300026948 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - Naphthalene biodegradation metagenome 13C3doseC (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026948 Metagenome Analysis spades v. 3.11.1 Yes Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.292222 -73.604444 13642876 27486 16 1 17 1 Unrestricted 0.0 Metagenome 3300014598 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01395 Weill Cornell Medical College 3300014598 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.61 -73.98 26601516 34308 7 0 19 0 SRX823335 0.0 Metagenome 3300026015 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_401 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026015 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 54273229 151942 120 2 214 3 SRX2564941, SRX2581051 Unrestricted 0.0 Metagenome 3300046779 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Sangamon River, Fisher, Illinois, USA - sangamon_2019_sw_WHONDRS-S19S_0083 (version 2) DOE Joint Genome Institute (JGI) 3300046779 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 40.3108 -88.3227 394436934 613681 198 19 311 24 Unrestricted 0.0 Metagenome 7000000337 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765034022 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000337 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 6919907 11703 0 0 0 0 0.0 Metagenome 3300033485 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A DOE Joint Genome Institute (JGI) 3300033485 Metagenome Analysis spades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified soil 41.3792 -82.512 4164641368 10191683 2616 9 4674 26 SRX7584798 Unrestricted 7.97 Metagenome 3300056854 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Activated sludge microbial communities from bioreactor in WWTP, Madison, WI, USA - RS_2020-07-14_SampleB (version 2) DOE Joint Genome Institute (JGI) 3300056854 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.03331 -89.35633 157259673 195159 64 11 80 14 Unrestricted 0.0 Metagenome 3300026068 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleC_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026068 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.224476 -122.019341 72966976 193041 161 1 282 1 SRX7188162 Unrestricted 0.0 Metagenome 3300008336 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 638754422 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008336 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 27935327 57289 29 0 54 0 0.0 Metagenome 3300040438 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_009-M-20170627-COMP-DNA1 Battelle Memorial Institute 3300040438 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 4130608 12206 24 0 43 0 0.0 Metagenome 2088090022 *Microbiome Permanent Draft Rumen microbial communities of musk oxen from Alaska Sample MXST National Research Council of Canada 2088090022 Metagenome Analysis released per Rekha No Yes robert.forster@agr.gc.ca Robert Forster No Host-associated Mammals Stomach Digestive system Rumen Rumen 64.880776 -147.869984 86700198 234269 250 9 429 0 0.0 Metagenome 3300051668 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Frauenau, Bavaria, Germany - BW_CO_027D DOE Joint Genome Institute (JGI) 3300051668 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.997182 13.361302 1570404418 3529688 635 40 1201 83 Unrestricted 9.09 Metagenome 3300020576 *Microbiome Finished Seoul Wastewater Treatment Plant Virome, South Korea Activated sludge viral community from Seonam wastewater treatment plant, Seoul, South Korea - SWWTP-sludge2 Macrogen 3300020576 Metagenome Analysis SPAdes 3.10.1 released by JGI data releasing policy No Yes chojc@inha.ac.kr Jang-Cheon Cho No Engineered Wastewater Unclassified Activated Sludge Unclassified Activated sludge 37.577125 126.82583 454049630 1212051 15 2 31 5 0.0 Metagenome 3300038342 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A15_5cm_0M University of Tennessee 3300038342 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 35486910 98023 83 3 175 5 SRX710558 0.0 Metagenome 3300038760 *Microbiome Permanent Draft Marine microbial communities from North Atlantic, Canada Marine microbial communities from North Atlantic, Canada - TB19GW National Research Council, Canada Plant Biotechnology Institute 3300038760 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 47.0 -48.471 28507300 53313 36 1 71 4 0.0 Metagenome 3300027906 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027906 Metagenome Analysis spades v. 3.11.1 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 15.249 -20.515 2576951290 5712806 766 816 1159 1519 SRX2997972 Unrestricted 0.0 Metagenome 3300070717 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lajas Experimental Station, Puerto Rico, USA - LAJA_044-M-20160914-COMP-DNA1 3300070717 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 610405 2535 13 2 40 7 0.0 Metagenome 3300041558 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_355 MetaG AgResearch, New Zealand, Mosgeil 3300041558 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1715799820 3518183 266 23 1138 51 0.0 Metagenome 3300013430 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100387 University of Pennsylvania 3300013430 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 1063521 2923 4 4 4 7 SRX756270 0.0 Metagenome 3300042281 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA MBR feed microbial communities from membrane bioreactor in Denver, Colorado, USA - FD_D250 DOE Joint Genome Institute (JGI) 3300042281 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Wastewater Mine water Industrial wastewater Produced water MBR feed 39.7823 -104.9101 547427358 832282 430 0 641 1 Unrestricted 19.67 Metagenome 3300011874 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00749 Weill Cornell Medical College 3300011874 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.77 -73.91 47523869 73331 30 2 46 1 SRX822716 0.0 Metagenome 3300008144 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764143897 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008144 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 179210946 264296 146 0 234 0 0.0 Metagenome 3300015607 *Microbiome Permanent Draft Wastewater microbial communities from the domestic sewers Wastewater microbial communities from domestic sewers in Singapore - Site D Nov Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300015607 Metagenome Analysis CLC workbench released by JGI data releasing policy No Yes erinscm@nus.edu.sg Charmaine Ng No Engineered Wastewater Unclassified Sewage Unclassified Wastewater 1.28362 103.859825 147239647 232240 4 0 5 0 0.0 Metagenome 3300049560 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2017 MH01_25cm DOE Joint Genome Institute (JGI) 3300049560 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.358 19.0415 170105320 301598 202 4 349 6 Restricted 0.0 Metagenome 3300027226 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1550B-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027226 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2328 -123.878 92492668 212936 192 82 291 128 SRX2753722 Unrestricted 25.22 Metagenome 3300032049 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS60 DOE Joint Genome Institute (JGI) 3300032049 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5341 -110.798 212492301 431398 132 0 173 0 SRX6411875 Unrestricted 228.12 Metagenome 3300021443 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 12015 DOE Joint Genome Institute (JGI) 3300021443 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.7468 -122.0193 932922733 2252428 647 137 907 216 SRX4010482 Unrestricted 21.03 Metagenome 2035918002 *Microbiome Permanent Draft Activated sludge microbial communities from Commune de Morges, Switzerland Activated sludge microbial communities from Commune de Morges, Switzerland - plasmid pool Morges-2009 (Newbler) DOE Joint Genome Institute (JGI) 2035918002 Metagenome Analysis Newbler released per Simon -- IMGSUPP2949 No Yes sgtringe@lbl.gov Susannah Tringe Yes 23407308 Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Activated sludge Wastewater plasmid pools 46.51668 6.510145 7-7.2 13057318 30169 32 0 34 0 0.0 Metagenome 3300038948 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Natural salt marsh sediment microbial communities from Abbotts Hall, United Kingdom - W AHNM 2A University of York 3300038948 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Natural salt marsh sediment 51.7865 0.86085 80971243 202734 112 1 213 0 0.0 Metagenome 3300010407 *Microbiome Permanent Draft Microbial communities from soil contaminated with neutral mine drainage from mine area in Canaa dos Carajas, Brazil Microbial communities from soil contaminated with neutral mine drainage from mine area in Canaa dos Carajas, Brazil - beginning channel, sample P3 Illumina 3300010407 Metagenome Analysis IDBA UD released per JGI data release policy No Yes leticiabp11@gmail.com Leticia Pereira No Environmental Terrestrial Unclassified Soil Contaminated soil -6.42916667 -50.06611111 5467419 14291 2 0 5 4 0.0 Metagenome 3300024965 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 115_HOW13 (SPAdes) DOE Joint Genome Institute (JGI) 3300024965 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 107910626 162625 56 0 68 0 SRX2721192 Unrestricted 0.0 Metagenome 3300013554 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - seawater enrichment SCG63 University of British Columbia 3300013554 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 1017513 2306 1 0 6 0 SRX143172 0.0 Metagenome 3300044858 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME24Sep2002-rr0954 DOE Joint Genome Institute (JGI) 3300044858 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 944292049 1493435 331 44 435 58 Unrestricted 16.64 Metagenome 3300027863 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - OP-RAMG-01 (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300027863 Metagenome Analysis spades v. 3.11.1 Yes Yes rmkelly@ncsu.edu; twoyke@lbl.gov Robert Kelly; Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.611006 -110.440182 1826217283 3013666 1433 69 2055 103 SRX2554840, SRX2554839 Unrestricted 0.0 Metagenome 3300000102 *Microbiome Draft Shipworm microbial communities from Puget Sound, Washington USA, from multiple species of wood-boring bivalves (shipworms) Microbial communities from multiple species of Shipworm: Sample from Bankia setacea gill BSg3 v2 (version 2) DOE Joint Genome Institute (JGI) 3300000102 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS No Yes distel@oglf.org Daniel Distel, Dan Distel No Host-associated Mollusca Gills Respiratory system Extracellular Shipworm 47.957498 -122.529373 620222960 1371171 12 22 18 4 Unrestricted 0.0 Metagenome 3300024045 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-285 DOE Joint Genome Institute (JGI) 3300024045 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Unclassified Plant litter Unclassified leaf litter 40.2198 -122.9842 122490458 238052 30 26 38 50 SRX4392088 Unrestricted 42.62 Metagenome 3300035648 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS45_3 University of Hohenheim 3300035648 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 48002149 71763 53 0 96 0 0.0 Metagenome 3300026342 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_05_30cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026342 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 537000777 878749 307 1 447 2 SRX2728028 Unrestricted 0.0 Metagenome 3300045154 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_1_D DOE Joint Genome Institute (JGI) 3300045154 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 159921292 181061 100 1 114 2 Unrestricted 125.29 Metagenome 3300026760 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-B (SPAdes) DOE Joint Genome Institute (JGI) 3300026760 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 25002847 74585 57 7 120 13 SRX2575557 Unrestricted 0.0 Metagenome 3300014574 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR11_S1_MetaG DOE Joint Genome Institute (JGI) 3300014574 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 61.2413 21.4947 36233086 103435 48 3 92 4 SRX3603476 Unrestricted 288.99 Metagenome 3300017725 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 21 SPOT_SRF_2011-04-29 DOE Joint Genome Institute (JGI) 3300017725 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 293422456 697662 75 34 148 64 SRX7207132, SRX7207131 Unrestricted 0.0 Metagenome 3300024918 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 58_HOW8 (SPAdes) DOE Joint Genome Institute (JGI) 3300024918 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 53613574 81712 49 1 54 2 SRX2720608 Unrestricted 0.0 Metagenome 3300070557 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_002-O-20170721-COMP-DNA1 Battelle Memorial Institute 3300070557 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 68.627943 -149.347229 5.82-6.13 56147814 167502 112 5 216 9 0.0 Metagenome 3300041718 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_148 MetaG AgResearch, New Zealand, Mosgeil 3300041718 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1356844214 2719336 309 29 1050 32 0.0 Metagenome 3300036643 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C1-3A DOE Joint Genome Institute (JGI) 3300036643 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 236178155 702111 419 10 711 23 SRX8816742 Unrestricted 5.22 Metagenome 3300011382 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00729 Weill Cornell Medical College 3300011382 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.7 -74.0 15190453 19482 5 0 14 0 SRX822696 0.0 Metagenome 3300022208 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_4_1 DOE Joint Genome Institute (JGI) 3300022208 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Sediment Marine Unclassified sediment 38.05 -121.934 848837133 1751459 722 16 1268 31 SRX4053108 Unrestricted 10.6 Metagenome 3300003357 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A3-11 DOE Joint Genome Institute (JGI) 3300003357 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 295299 1032 16 0 37 0 SRX2576226 Unrestricted 0.0 Metagenome 3300022928 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011513CT metaG (version 2) DOE Joint Genome Institute (JGI) 3300022928 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 927127192 1740453 402 80 705 122 SRX4071582 Unrestricted 30.66 Metagenome 3300047496 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Southern Region, Iceland - Sphagnum teres 9_TE_ICE DOE Joint Genome Institute (JGI) 3300047496 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.1115 -20.561 1409122487 2498536 624 167 1062 276 SRX14786682 Unrestricted 7.58 Metagenome 3300041765 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_60 MetaG AgResearch, New Zealand, Mosgeil 3300041765 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1599206953 3126361 287 21 1138 26 0.0 Metagenome 3300039186 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Taynaya Bay, Antarctica - #412 Australian Centre for Ecogenomics 3300039186 Metagenome Analysis Spades v. 3.13.0 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.457867 78.220083 1039896900 2397804 639 15 1049 33 0.0 Metagenome 3300028029 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in the Atlantic and Pacific Ocean Tube worm associated microbial communities from hydrothermal vent at the East Pacific Rise, Pacific Ocean - Riftia DOE Joint Genome Institute (JGI) 3300028029 Metagenome Analysis spades v. 3.11.1 Yes Yes pgirguis@oeb.harvard.edu Peter Girguis No Host-associated Annelida Unclassified Integument Unclassified tube worm surface 9.8441 -104.2967 592228120 1094814 487 36 793 51 SRX5246490 Unrestricted 15.47 Metagenome 3300054992 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_CO_0C3D DOE Joint Genome Institute (JGI) 3300054992 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0482 10.46078 748240462 1765759 508 55 973 83 Unrestricted 0.0 Metagenome 3300046394 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA067b-TCB DOE Joint Genome Institute (JGI) 3300046394 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6875 -83.5012 346440746 934012 371 54 690 98 Unrestricted 7.56 Metagenome 3300001747 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A5-12 DOE Joint Genome Institute (JGI) 3300001747 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 474028 1698 21 0 42 3 SRX1990532 Unrestricted 0.0 Metagenome 3300005140 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Hot Lake Consortium UCC-RE (Hybrid Assembly) DOE Joint Genome Institute (JGI) 3300005140 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 114887060 151602 102 3 120 5 SRX2575224, SRX2575222, SRX2575223, SRX2575220, SRX2575221 Unrestricted 0.0 Metagenome 3300043549 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime ecozone, Canada - Lake 07-227 Genome Quebec 3300043549 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.219083 -63.31812 1076070361 2371306 375 166 678 293 0.0 Metagenome 3300003585 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_135m_DNA DOE Joint Genome Institute (JGI) 3300003585 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 175667182 373310 228 13 398 15 Unrestricted 0.0 Metagenome 3300043616 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 182-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043616 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9346 -107.0121 427918714 1169252 374 11 665 18 Unrestricted 6.56 Metagenome 3300044260 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - MER1-7-19-19 DOE Joint Genome Institute (JGI) 3300044260 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.3841 -120.4675 455585100 1116216 417 35 715 50 Restricted 7.4 Metagenome 2170459003 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm 454 Life Sciences 2170459003 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.804241 -0.372114 468178003 1273470 351 28 622 36 0.0 Metagenome 3300032897 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5 DOE Joint Genome Institute (JGI) 3300032897 Metagenome Analysis spades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified soil 26.5008 -80.2398 3737025497 7803687 1715 58 2945 119 SRX5666032 Unrestricted 7.95 Metagenome 3300013714 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01049 Weill Cornell Medical College 3300013714 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.67 -73.92 22046535 32314 17 0 22 0 SRX823011 0.0 Metagenome 3300043471 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 313-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043471 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9097 -107.0286 787295617 2143669 642 36 1230 60 Unrestricted 6.81 Metagenome 3300071050 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_031-M-20180710-COMP-DNA1 3300071050 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 2536617 8355 22 3 41 5 0.0 Metagenome 3300018036 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300018036 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1240460433 2668337 919 82 1713 114 SRX4074069 Unrestricted 20.27 Metagenome 3300027037 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027037 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 115133308 302392 199 130 372 212 SRX3311928 Unrestricted 0.0 Metagenome 3300070385 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_013-O-20180712-COMP-DNA1 3300070385 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 56079533 168074 84 6 164 11 0.0 Metagenome 3300042330 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME16Jun2017-rr0754 DOE Joint Genome Institute (JGI) 3300042330 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 459988156 702925 184 30 262 44 Unrestricted 24.84 Metagenome 3300044451 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_60m_2014 DOE Joint Genome Institute (JGI) 3300044451 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 499219936 889950 253 18 444 32 Unrestricted 34.17 Metagenome 3300001237 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and P1 DOE Joint Genome Institute (JGI) 3300001237 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 70743295 118090 83 0 108 0 SRX3311621 Unrestricted 0.0 Metagenome 3300014691 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00541 Weill Cornell Medical College 3300014691 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.68 -73.9 49997428 69841 21 0 29 0 SRX822508 0.0 Metagenome 3300031413 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLT.R2 DOE Joint Genome Institute (JGI) 3300031413 Metagenome Analysis spades v. 3.12.0 Yes Yes icelab@berkeley.edu Steven Lindow No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 37.8864 -122.2981 1145796244 2144131 433 32 602 45 SRX5656684 Unrestricted 45.83 Metagenome 3300042775 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S1_10_20 NMDC pilot DOE Joint Genome Institute (JGI) 3300042775 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37229149 -119.2718121 94877976 239232 163 18 321 23 SRX2523199 0.0 Metagenome 3300014907 *Microbiome Permanent Draft Danish lakes Microbial communities Depth profiles Lake Almind and Hund Freshwater microbial communities from Lake Almind, Silkeborg, Region Midtjylland, Denmark - ALS_03.08.12_15m re-submission with coverage Odense University Hospital 3300014907 Metagenome Analysis MEGAHIT v1.1.1 released by JGI data releasing policy Yes Yes atreusch@biology.sdu.dk; kamillasjogaard@biology.sdu.dk Alexander Treusch; Kamilla Sj?gaard No Environmental Aquatic Lake Freshwater Unclassified Freshwater 56.148 9.546 6.8 16608930 39814 21 7 46 10 0.0 Metagenome 3300005848 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - site 1 Avi (SPADES assembly) (version 3) DOE Joint Genome Institute (JGI) 3300005848 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, rmkelly@ncsu.edu Natasha Ivanova, Robert Kelly Yes 29475869 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6102 -110.4387 6063420 7509 17 0 6 0 SRX3317568, SRX7118881, SRX7118892, SRX7118880, SRX7118891, SRX7118890, SRX7118896, SRX7118885, SRX7118895, SRX7118884, SRX7118883, SRX7118894, SRX7118893, SRX7118882, SRX7118889, SRX7118888, SRX7118887, SRX7118886, SRX7118897 Unrestricted 0.0 Metagenome 3300020465 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000579 (ERX556060-ERR598961) CEA Genoscope 3300020465 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -16.9687 -100.7324 1553202158 3720685 704 43 1395 90 0.0 Metagenome 3300037307 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from Nevada, United States - Crystal Pool (CP_S1) DOE Joint Genome Institute (JGI) 3300037307 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified Desert spring 36.4202 -116.323 7.4 2936917984 4088962 1084 11 1585 22 SRX9167284 Unrestricted 16.44 Metagenome 3300020418 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100002051 (ERX556028-ERR599136) CEA Genoscope 3300020418 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 25.5416 -88.4044 1123274256 2597017 687 47 1271 102 0.0 Metagenome 3300014227 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 179_D2_2014-5-9 San Diego State University 3300014227 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 281634 1100 8 3 16 12 0.0 Metagenome 3300004144 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius ilvae PIANOSA.1 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300004144 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 685825323 1744618 16 4 28 10 SRX3299599, SRX3299600 Unrestricted 0.0 Metagenome 3300030092 *Microbiome Permanent Draft Serpentinized rock microbial communities from various locations Hydrothermal vent fluid microbial communities from New Bay of Prony, New Caledonia - Prony28 Marine Biological Laboratory 3300030092 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid -22.3609167 166.8799667 39826329 78127 53 1 75 2 0.0 Metagenome 3300055370 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Wyoming, USA - R_C2_S1 DOE Joint Genome Institute (JGI) 3300055370 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 41.02807 -106.63173 199038097 364559 215 31 429 50 Unrestricted 0.0 Metagenome 3300042262 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D27_1 DOE Joint Genome Institute (JGI) 3300042262 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 214204336 324076 130 15 185 28 Unrestricted 52.58 Metagenome 3300048858 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD13 DOE Joint Genome Institute (JGI) 3300048858 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.347657 -119.2808 833105637 1115906 147 78 172 95 Unrestricted 36.56 Metagenome 3300004211 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 34_HOW6 DOE Joint Genome Institute (JGI) 3300004211 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 82476643 215470 63 11 127 19 SRX2720411 Unrestricted 0.0 Metagenome 3300045531 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mississippi River, Louisiana, USA - NASQAN2011_231 DOE Joint Genome Institute (JGI) 3300045531 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 30.4456 -91.1915 318298054 756856 418 98 684 177 Unrestricted 0.0 Metagenome 3300025618 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC071_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025618 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 37.8 -122.27 405008700 712412 370 4 477 6 SRX2338986 Unrestricted 0.0 Metagenome 3300047321 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere DOE Joint Genome Institute (JGI) 3300047321 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1215 -123.2719 1349544190 2149487 445 155 711 212 Unrestricted 17.08 Metagenome 3300028965 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 39_4M Beijing Genomics Institute (BGI) 3300028965 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 55689057 62608 38 0 46 0 ERX491132 0.0 Metagenome 3300045817 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_3_D DOE Joint Genome Institute (JGI) 3300045817 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 163957693 205137 101 1 124 2 Unrestricted 99.25 Metagenome 3300017656 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015 DOE Joint Genome Institute (JGI) 3300017656 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 813653722 1848578 551 29 1011 46 SRX3048162 Unrestricted 5.48 Metagenome 3300034948 *Microbiome Permanent Draft Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China - SA5 Sun Yat-Sen University 3300034948 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy No Yes yuxiaoli92@163.com Xiaoli Yu No Environmental Aquatic Intertidal zone Marine Mangrove sediment mangrove sediment 23.45 116.43 410525385 957841 371 36 836 45 0.0 Metagenome 3300028918 *Microbiome Permanent Draft Dolichoderus ant bacterial communities Ant gut bacterial community from Dolichoderus sp. 2-PL2018, Madre de Dios, Puerto Maldonado, Peru - colony JSC085 Harvard University 3300028918 Metagenome Analysis IDBA-UD v. 1 released by JGI data releasing policy Yes Yes jar337@drexel.edu Jacob Russell No Host-associated Arthropoda: Insects Gut Digestive system Unclassified ant gut -12.5 -70.1 144609346 152719 2 15 2 24 SRX3936344 0.0 Metagenome 3300013131 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo - kab_092012_10m DOE Joint Genome Institute (JGI) 3300013131 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -1.64 29.05 1894451801 3734957 1449 206 2155 309 SRX7700216 Unrestricted 19.35 Metagenome 3300025957 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1 (SPAdes) DOE Joint Genome Institute (JGI) 3300025957 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.000637 -121.624207 92882411 220137 132 2 209 3 SRX7143250 Unrestricted 0.0 Metagenome 3300034068 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031 DOE Joint Genome Institute (JGI) 3300034068 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1240108856 2281677 379 132 540 224 SRX7621635 Unrestricted 10.86 Metagenome 3300043525 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield ecozone, Canada - Lake 06-309 Genome Quebec 3300043525 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.401284 -91.254248 1011334872 2401938 426 186 742 293 0.0 Metagenome 3300028045 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_10_MG DOE Joint Genome Institute (JGI) 3300028045 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Inlet Marine Unclassified seawater 48.58 -123.5 1307462827 3242638 1171 101 2065 197 SRX5244019 Unrestricted 8.5 Metagenome 2058419018 *Microbiome Permanent Draft Feline fecal microbial communities from Illinois, USA cat metagenome 8 Research and Testing Laboratory 2058419018 Metagenome Analysis seqman NGEN transcriptome released per JGI data release policy No Yes sdowd@pathogenresearch.org Scot E. Dowd No Host-associated Mammals Large intestine Digestive system Fecal Feline fecal 40.11 -88.4 90594606 267647 174 0 285 0 0.0 Metagenome 3300025665 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_130m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025665 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 437513189 838425 251 18 382 24 Unrestricted 0.0 Metagenome 3300049653 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D2_A_0_control DOE Joint Genome Institute (JGI) 3300049653 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 191629203 462840 390 30 728 48 Unrestricted 10.95 Metagenome 3300012864 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - HID1975I_E6 MG DOE Joint Genome Institute (JGI) 3300012864 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie Yes 29545786 Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 161008697 245156 169 3 215 4 SRX3564657 Unrestricted 0.0 Metagenome 3300002221 *Microbiome Permanent Draft Marine microbial communities from oxygen minimum zone in the mesopelagic equatorial Pacific Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_300m DOE Joint Genome Institute (JGI) 3300002221 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes cdupont@jcvi.org Chris Dupont, Chris L. Dupont No Environmental Aquatic Oceanic Marine Unclassified Marine 8.0 -156.0 177946573 409086 213 8 381 12 SRX1991080 Unrestricted 0.0 Metagenome 3300052880 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T88 S (v2) (version 2) DOE Joint Genome Institute (JGI) 3300052880 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7692 -64.3744 552242164 1341271 37 4 64 2 Restricted 0.0 Metagenome 3300032025 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20 DOE Joint Genome Institute (JGI) 3300032025 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1032938122 2513195 368 3 627 7 SRX5817499 Unrestricted 11.02 Metagenome 3300050492 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation DOE Joint Genome Institute (JGI) 3300050492 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Host-associated Plants Endosphere Roots Unclassified Populus endosphere 35.8443 -83.9607 2387560218 5919476 1134 65 2109 108 SRX2748474 0.0 Metagenome 3300020537 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 21SEP2011 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020537 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 115923106 239866 113 10 175 11 SRX1989651 Unrestricted 0.0 Metagenome 3300011361 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00288 Weill Cornell Medical College 3300011361 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.71 -74.0 39199871 58941 22 0 23 0 SRX822261 0.0 Metagenome 2189573024 *Microbiome Finished Speleothem and rock wall surfaces microbial communities from Kartchner Caverns, Benson, Arizona, USA Echo Passage metagenome Arizona Genomics Institute 2189573024 Metagenome Analysis Newbler Released to public per IMG data release policy (June 10 2014) No Yes moo@email.arizona.edu Marian Ortiz No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Speleothem and rock wall surfaces 31.837801 -110.350292 138499921 365407 135 3 254 3 0.0 Metagenome 3300040743 *Microbiome Permanent Draft Aquaculture water microbial communities from ponds in shrimp farm in Nellore, India Aquaculture water microbial communities from disease free pond in shrimp farm in Nellore, India - SGS1 AgriGenome Labs Pvt Ltd 3300040743 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy No Yes ashok@ciba.res.in Ashok Kumar Jangam No Environmental Aquatic Shrimp pond Aquaculture Unclassified aquaculture water 14.4494 79.9874 83087094 94582 10 2 15 2 0.0 Metagenome 3300002697 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Biofilm from sections of failed pipe of Encana Pipeline McGill University 3300002697 Metagenome Analysis Released because the data are published No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 55.07 -110.53 0 0 0 0 0 0 0.0 Metagenome 3300002901 *Microbiome Permanent Draft Soil microbial communities from Kansas (Konza Prairie Natural Area and Manhattan, Kansas, USA) Soil microbial communities from Manhattan, Kansas, USA - Sample 100um Nextera DOE Joint Genome Institute (JGI) 3300002901 Metagenome Analysis revert back to private per Christa Yes Yes elbrodie@lbl.gov, ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Unclassified Soil Unclassified Soil 39.214 -96.5852 50231221 177849 139 18 234 34 Unrestricted 0.0 Metagenome 3300043170 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_2000m_C6_10cm15cm (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043170 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.9138 -121.159 395790110 652608 227 1 430 1 SRX9141698 Unrestricted 38.23 Metagenome 3300026613 *Microbiome Permanent Draft Cephalochordate Microbial Metagenomes Florida lancelet gut microbial communities from Tampa Bay, Florida, USA - NH014 University of California, San Diego, Scripps Institute of Oceanography 3300026613 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton No Host-associated Cephalochordata Intestine Digestive system Fecal lancelet gut 27.847583 -82.552861 205669796 238084 72 4 72 6 0.0 Metagenome 3300013806 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - sediment SCG71 University of British Columbia 3300013806 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Sediment Marine 386641 1235 0 0 2 0 SRX143180 0.0 Metagenome 3300040951 *Microbiome Permanent Draft Sediment microbial communities from Haima cold seep, South China Sea, China Sediment microbial communities from Haima cold seep, South China Sea, China - SY70.5.12_HM2M Magigene technology co., LTD. 3300040951 Metagenome Analysis IDBA v. 1.1.3 released by JGI data releasing policy No Yes sulei@tongji.edu.cn Lei Su No Environmental Aquatic Cold seeps Marine Sediment Sediment 16.729163 110.473065 .22 to .24 398366024 467523 133 3 156 4 0.0 Metagenome 3300009837 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N1_20_30 DOE Joint Genome Institute (JGI) 3300009837 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380143 -119.2723688 249477213 534590 184 0 377 1 SRX2522697 Unrestricted 0.0 Metagenome 3300006006 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_12-Aug-14 DOE Joint Genome Institute (JGI) 3300006006 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 131149379 461745 340 117 641 200 SRX2838887 Unrestricted 0.0 Metagenome 3300005441 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG DOE Joint Genome Institute (JGI) 3300005441 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 4978652248 14321929 3611 223 6309 454 SRX2744973 Unrestricted 0.0 Metagenome 7000000376 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765094712 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000376 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 4172972 9039 0 0 0 0 0.0 Metagenome 3300023500 *Microbiome Permanent Draft Marine microbial mats from Loihi Seamount, Hawaii, USA Marine microbial mat from Loihi Seamount, Hawaii, USA - Marker 39_BS4 Individual Assembly Western Washington University 3300023500 Metagenome Analysis metaSPAdes v. 3.10.0 Metagenomes associated with bioRxiv doi:10.1101/722066 Yes Yes hfullerton@gmail.com; cmoyer@hydro.biol.wwu.edu; mcallis@uw.edu Heather Fullerton; Craig Moyer; Sean McAllister No Environmental Aquatic Hydrothermal vents Marine Microbial mats Marine 18.902 -155.257 158674430 228348 69 5 114 6 0.0 Metagenome 3300001026 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN630 DOE Joint Genome Institute (JGI) 3300001026 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 94474 304 17 1 27 0 SRX3311858 Unrestricted 0.0 Metagenome 3300017749 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 15 SPOT_SRF_2010-09-15 DOE Joint Genome Institute (JGI) 3300017749 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 404156836 925586 71 47 153 99 SRX7207095, SRX7207094 Unrestricted 0.0 Metagenome 3300013963 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - sediment SCG88 University of British Columbia 3300013963 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Sediment Marine 202296 631 0 0 3 0 SRX143197 0.0 Metagenome 3300056630 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.18W.9 SIP fraction DOE Joint Genome Institute (JGI) 3300056630 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 105104829 202004 67 11 102 12 Unrestricted 10.98 Metagenome 3300000641 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 20AUG2007 hypolimnion DOE Joint Genome Institute (JGI) 3300000641 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300047514 *Microbiome Permanent Draft Soil microbial communities from Blodgett Forest Research Station, California, USA Soil microbial communities from Blodgett Forest Research Station, California, USA - BWE201506021C1020 DOE Joint Genome Institute (JGI) 3300047514 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.912 -120.6615 13436316 27240 73 25 153 34 Unrestricted 51.11 Metagenome 3300052694 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Rock endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - YNP_Endolithic_4 DOE Joint Genome Institute (JGI) 3300052694 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rock 44.7986 -110.7207 219574867 342457 130 25 173 34 Unrestricted 413.04 Metagenome 3300025876 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic Microbial community sample from North Sea - COGITO 998_met_06 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025876 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Pelagic marine 54.184167 7.9 1000529026 1844801 517 103 946 180 SRX802143 Unrestricted 0.0 Metagenome 3300007362 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 675950834 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007362 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 145922181 185528 150 0 245 0 0.0 Metagenome 3300007740 *Microbiome Permanent Draft Permafrost core soil microbial communities from Svalbard, Norway Permafrost core soil microbial communities from Svalbard, Norway - sample 2-9-2 Soapdenovo Princeton University 3300007740 Metagenome Analysis soapdenovo1.06 released per JGI data release policy Yes Yes xue.ethan@gmail.com yaxin xue No Environmental Terrestrial Unclassified Soil Permafrost soil 78.11096 15.55294 65874901 88957 12 1 12 1 0.0 Metagenome 7000000595 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human palatine tonsils microbial communities from NIH, USA - visit 2, subject 763961826 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000595 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Tonsils Lymphatic system Palatine/Faucial Human 39.0042816 -77.1012173 79617890 146045 0 0 0 0 SRX024895 0.0 Metagenome 3300012217 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metalplastic -P01027 Weill Cornell Medical College 3300012217 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface City subway metal/plastic 40.68 -73.83 11942832 18567 11 0 11 0 SRX822989 0.0 Metagenome 3300006843 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT237_1_0075m University of Hawaii 3300006843 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 137636679 216211 170 4 230 7 0.0 Metagenome 3300055079 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_70-s34 day 182 DOE Joint Genome Institute (JGI) 3300055079 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1654157530 2376622 236 158 319 167 Unrestricted 39.33 Metagenome 3300003620 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI037_S3LV_10m_DNA DOE Joint Genome Institute (JGI) 3300003620 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 423942100 848459 378 118 651 157 Unrestricted 0.0 Metagenome 3300023169 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L081-202R-4 DOE Joint Genome Institute (JGI) 3300023169 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 508048963 1191628 592 124 1061 198 SRX4799637 Unrestricted 8.32 Metagenome 3300001513 *Microbiome Permanent Draft Human axilla skin microbial communities from the University of Liverpool, UK Human axilla skin microbial communities from the University of Liverpool, UK - AX18 3300001513 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Host-associated Mammals: Human Skin Integumentary system Axilla/Armpit Human axilla skin 53.3484 -3.009 22203167 47761 40 0 97 1 0.0 Metagenome 3300061125 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIF7SW PMA-treated Jet Propulsion Laboratory, California Institute of Technology 3300061125 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 21487133 29288 12 5 11 7 SRX2249353, SRX3808541, SRX3808518, SRX2249349 0.0 Metagenome 3300047366 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_161109.NP1 DOE Joint Genome Institute (JGI) 3300047366 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 903649091 1889966 534 55 865 94 Unrestricted 11.86 Metagenome 3300050381 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Alaska, USA - copperriver_2019_sed_WHONDRS-S19S_0091 DOE Joint Genome Institute (JGI) 3300050381 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 60.520868 -144.837472 562313349 1460361 749 6 1437 18 Restricted 20.51 Metagenome 3300013629 *Microbiome Permanent Draft Lung microbial and viral communities from cystic fibrosis patients in San Diego, USA Lung microbial and viral communities from cystic fibrosis patients in San Diego, USA - CF1-3-St-MgMD-nonhuman San Diego State University 3300013629 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Sputum/Phlegm Respiratory system Unclassified Human lung 7110846 14151 10 2 15 2 0.0 Metagenome 3300038613 *Microbiome Permanent Draft Seawater microbial communities from the Baltic Proper 10 km east of Oland, Sweden Seawater microbial communities from the Baltic Proper 10 km east of Oland, Sweden - LMO_120705 Royal Institute of Technology 3300038613 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 26667648 Environmental Aquatic Unclassified Marine Unclassified Seawater 56.93085 17.060667 34339927 87662 49 5 96 14 SRX1050747 0.0 Metagenome 3300022310 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1BM1 JM1 AGRF 3300022310 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 38405351 72298 27 0 33 1 0.0 Metagenome 3300037164 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 E1 30-34 DOE Joint Genome Institute (JGI) 3300037164 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.047 752720061 1552948 471 4 795 4 SRX8143358 Unrestricted 8.37 Metagenome 3300019363 *Microbiome Permanent Draft Mouse fecal microbial communities from Athens, Georgia, USA Mouse fecal microbial communities from Athens, Georgia, USA - 8A1E Georgia Genomics Facility 3300019363 Metagenome Analysis megahit released by JGI data releasing policy No Yes ptu@live.unc.edu Pengcheng Tu No Host-associated Mammals Large intestine Digestive system Fecal mouse fecal 33.9519 -83.3576 31596417 44965 71 0 80 0 0.0 Metagenome 3300027151 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepA_0h DOE Joint Genome Institute (JGI) 3300027151 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 160381024 317088 152 13 228 13 SRX5245100 Unrestricted 16.03 Metagenome 3300046002 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater viral communities from Lake Mendota, Wisconsin, United States - ME_2020-08-05_23.5m_Virus_AB DOE Joint Genome Institute (JGI) 3300046002 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 954444294 1917756 216 28 363 37 Unrestricted 30.08 Metagenome 3300011190 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 1 OAHU.JWI-30 metaG DOE Joint Genome Institute (JGI) 3300011190 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms 21.2704 -157.7748 716625453 1021396 11 27 16 33 SRX3007246 Unrestricted 0.0 Metagenome 3300007968 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764447348 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007968 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 94673152 154421 79 0 110 0 0.0 Metagenome 3300033812 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Sediment microbial communities from East River floodplain, Colorado, United States - 65_j17 DOE Joint Genome Institute (JGI) 3300033812 Metagenome Analysis spades v. 3.13.0 Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Aquatic Sediment Floodplain Unclassified sediment 38.9229 -106.9499 351769498 968275 420 20 789 27 SRX7630715 Unrestricted 8.73 Metagenome 3300044305 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T112 D DOE Joint Genome Institute (JGI) 3300044305 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.8272 -64.3811 361439336 910492 20 3 33 2 Unrestricted 42.82 Metagenome 2236876020 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Tailings pond microbial communities from Northern Alberta -Short chain hydrocarbon degrading methanogenic enrichment culture SCADC: McGill University 2236876020 Metagenome Analysis released per user request No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Built environment Petrochemical Tailings pond Wastewater Hydrocarbon resource environments 39.0042816 -77.1012173 7.26 124936635 345540 150 1 290 2 0.0 Metagenome 3300030733 *Microbiome Permanent Draft Wheat crown rot disease influences the structure and diversity of wheat-associated microbiome Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 University of Western Sydney 3300030733 Metagenome Analysis MEGAHIT v. 1.0 released by JGI data releasing policy No Yes h.liu2@westernsydney.edu.au hongwei liu No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soils -27.565194 151.864444 157500511 351101 215 21 428 39 0.0 Metagenome 3300070911 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lyndon B. Johnson National Grassland, Texas, USA - CLBJ_031-M-20190416-COMP-DNA1 3300070911 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 578638 2027 10 0 14 0 0.0 Metagenome 3300007915 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit number 3 of subject 159753524 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007915 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 20669258 35098 19 0 25 0 0.0 Metagenome 3300001199 *Microbiome Permanent Draft Lotic microbial communities from nuclear landfill site in Hanford, Washington, USA Lotic microbial communities from nuclear landfill site in Hanford, Washington, USA - IFRC combined assembly Pacific Northwest National Laboratory 3300001199 Metagenome Analysis IDBA_ud released per JGI data release policy No Yes william.nelson@pnnl.gov Bill Nelson, Bill C. Nelson No Environmental Aquatic Lotic Freshwater Unclassified Lotic 46.371184 -119.275414 633875668 1176529 437 55 891 84 0.0 Metagenome 3300046464 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_150527.NP1 DOE Joint Genome Institute (JGI) 3300046464 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 928701188 1997483 527 209 834 356 Unrestricted 11.69 Metagenome 3300051526 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - W14NW0 DOE Joint Genome Institute (JGI) 3300051526 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 198590196 376851 231 60 443 76 Unrestricted 19.05 Metagenome 3300023187 *Microbiome Finished PPCP degradation by aerobic enrichment cultures (carbon source) Activated sludge enriched bacterial communities from WWTP in Fort Collins, Colorado, USA - OA Argonne National Laboratory 3300023187 Metagenome Analysis MegaHit v. 1.0.6 released by Karen Rossmassler Yes Yes karen.rossmassler@gmail.com Karen Rossmassler No Engineered Wastewater Unclassified Activated Sludge Unclassified activated sludge 40.585258 -105.084419 161214213 353418 203 2 335 5 0.0 Metagenome 3300028279 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 14D DOE Joint Genome Institute (JGI) 3300028279 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 303320432 716071 223 26 353 52 SRX5171234 Unrestricted 16.67 Metagenome 3300069262 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Chase Lake Wetlands, North Dakota, USA - WOOD_001-M-20210714-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069262 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 47.128258 -99.257768 2581360018 6218587 1399 56 2631 90 0.0 Metagenome 3300007048 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina ""control"", cg14ic" University of New South Wales 3300007048 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aimsgov.au, e.botte@aims.gov.au; n.webster@aimsgov.au Nicole Webster, Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Cinachyra sp. (marine sponge) -9.828217 150.820517 71308945 142639 71 1 93 5 0.0 Metagenome 3300020034 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - H1c2 DOE Joint Genome Institute (JGI) 3300020034 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9767 -107.0044 882603734 1675284 338 18 610 43 SRX3958813, SRX3958812 Unrestricted 0.0 Metagenome 3300027282 *Microbiome Permanent Draft Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland, that are autotrophic Deep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/9 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027282 Metagenome Analysis spades v. 3.11.1 Yes Yes rizlan.bernier-latmani@epfl.ch Rizlan Bernier-Latmani Yes 27739431 Environmental Aquatic Groundwater Deep subsurface Porewater Deep subsurface 47.379 7.1648 185046412 297183 143 1 209 3 SRX957916 Unrestricted 0.0 Metagenome 3300027076 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF012 (SPAdes) DOE Joint Genome Institute (JGI) 3300027076 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 95524199 268523 71 2 122 4 SRX2014344 Unrestricted 0.0 Metagenome 3300018077 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1 DOE Joint Genome Institute (JGI) 3300018077 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 1.7 1025895608 2162026 708 8 1308 25 SRX3939697 Unrestricted 5.53 Metagenome 3300006114 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug09 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006114 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 262546515 670241 195 64 308 102 SRX2565201 Unrestricted 0.0 Metagenome 3300002823 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A1-11 DOE Joint Genome Institute (JGI) 3300002823 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 148614 512 15 0 30 0 SRX1991130 Unrestricted 0.0 Metagenome 3300001061 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1109 DOE Joint Genome Institute (JGI) 3300001061 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 41682 123 8 0 23 0 SRX3311882 Unrestricted 0.0 Metagenome 3300020213 *Microbiome Permanent Draft Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP8.IB-2 DOE Joint Genome Institute (JGI) 3300020213 Metagenome Analysis spades v. 3.10.1 Yes Yes dysumner@ucdavis.edu Dawn Sumner No Environmental Aquatic Lake Freshwater Microbial mats freshwater microbial mat -77.5281 161.59 1244927466 2188669 709 35 1113 68 SRX3539178 Unrestricted 19.82 Metagenome 3300001753 *Microbiome Permanent Draft Marine sediment microbial communities from White Oak River estuary, North Carolina Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-3-24_28 DOE Joint Genome Institute (JGI) 3300001753 Metagenome Analysis Yes Yes acidophile@gmail.com Brett Baker Yes 26824177 Environmental Aquatic Intertidal zone Marine Estuary: Microbial mat Marine sediment 34.640199 -77.109447 719684507 1773993 673 6 1298 12 SRX2554362 Unrestricted 0.0 Metagenome 3300033128 *Microbiome Permanent Draft Microbial communities from various environments in Magnetic Island Reef, Townsville, Australia Macroalgae surface microbial communities from Magnetic Island Reef, Townsville, Australia - 36439 AGRF 3300033128 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes b.glasl@aims.gov.au Bettina Glasl No Host-associated Algae Unclassified Brown Algae Unclassified Macroalgae surface -19.1531 146.8641 986367551 2483473 608 33 996 85 0.0 Metagenome 3300001941 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Browns Bank, Gulf of Maine - GS003 J. Craig Venter Institute (JCVI) 3300001941 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine 42.85278 -66.217224 43542027 80361 42 0 56 0 0.0 Metagenome 3300044938 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_6_E DOE Joint Genome Institute (JGI) 3300044938 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 207983964 238111 131 2 139 1 Unrestricted 105.44 Metagenome 3300031772 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20 DOE Joint Genome Institute (JGI) 3300031772 Metagenome Analysis spades v. 3.12.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5072 -110.3564 3266749369 6506019 1550 17 2490 18 SRX6380970 Unrestricted 15.13 Metagenome 3300035541 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B2.7_Sample2.Rodeo7.Well665 DOE Joint Genome Institute (JGI) 3300035541 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 239334800 399545 237 0 335 1 SRX8351835 Unrestricted 53.78 Metagenome 3300031218 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #919 DOE Joint Genome Institute (JGI) 3300031218 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4563 78.1898 285280396 543477 115 17 161 24 SRX5649546 Unrestricted 67.98 Metagenome 3300039411 *Microbiome Permanent Draft Terrestrial soil microbial communities from rice fields in China Terrestrial soil microbial communities from rice field in Changchun,Jilin, China - 3JCC Shanghai Personal Biotechnology Co., Ltd. 3300039411 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes xjzhang68@sjtu.edu.cn Xiaojun Zhang No Environmental Terrestrial Paddy field/soil Soil Unclassified Terrestrial soil 125.18 43.71 2693659879 6445594 1422 27 2631 38 0.0 Metagenome 3300002266 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP17-MA 3300002266 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300070543 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from North Sterling, Colorado, USA - STER_028-M-20170605-COMP-DNA1 Battelle Memorial Institute 3300070543 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Agricultural land Soil Unclassified Terrestrial soil 40.473273 -103.018333 7.12-7.35 1964805 6044 14 2 18 3 0.0 Metagenome 3300017404 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_12SEP2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017404 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 237727312 433482 43 80 61 117 SRX3926774 Unrestricted 9.37 Metagenome 3300017942 *Microbiome Permanent Draft Coastal wetland sediment microbial communities from the Mid-Atlantic and Southeast Atlantic Coast of USA, responding to salinity intrusion. Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3 DOE Joint Genome Institute (JGI) 3300017942 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Freshwater sediment 35.9061 -76.1569 900139526 1920982 535 12 849 18 SRX4367180 Unrestricted 5.82 Metagenome 3300036965 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - 2AD 43 II DOE Joint Genome Institute (JGI) 3300036965 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 510521285 943788 591 8 908 16 SRX8362475 Unrestricted 21.89 Metagenome 3300034760 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 44SMS DOE Joint Genome Institute (JGI) 3300034760 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Sub-biocrust Soil Unclassified sub-biocrust soil 34.3778 -117.6098 327488724 744677 449 14 839 20 SRX7621466 Unrestricted 10.08 Metagenome 3300034342 *Microbiome Permanent Draft Metagenome from bioreactors working in AMD treatment Acid mine drainage microbial communities from passive bioreactor in Bogota, Colombia - C5Bx Illumina 3300034342 Metagenome Analysis MEGAHIT v. 1.0.2 released by JGI data releasing policy No Yes mvillegas@microbiomas.org Marcela Villegas No Engineered Bioreactor Unclassified Anaerobic Unclassified Acid Mine Drainage 4.624335 -74.063644 117651112 266222 213 5 474 8 0.0 Metagenome 3300012533 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - KNB2014incub_MG DOE Joint Genome Institute (JGI) 3300012533 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Unclassified Activated sludge Unclassified Active sludge 48.3 16.2 2418010149 4560877 1711 23 2633 42 SRX3372566 Unrestricted 0.0 Metagenome 3300024320 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 38D DOE Joint Genome Institute (JGI) 3300024320 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 309928815 627122 215 45 315 85 SRX4459457 Unrestricted 17.25 Metagenome 3300003204 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01K5-12 DOE Joint Genome Institute (JGI) 3300003204 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 202152 642 18 1 39 3 SRX2576207 Unrestricted 0.0 Metagenome 3300036918 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5CP15 DOE Joint Genome Institute (JGI) 3300036918 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 747928568 1592412 475 13 821 15 SRX8379427 Unrestricted 8.42 Metagenome 3300023091 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 30-34 DOE Joint Genome Institute (JGI) 3300023091 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 622091128 1267336 342 14 540 28 SRX4415370 Unrestricted 10.72 Metagenome 3300039122 *Microbiome Permanent Draft Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA - kan1 University of Minnesota 3300039122 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic River Freshwater Unclassified Freshwater 44.917867 -93.128967 4452000 5305 3 0 3 0 0.0 Metagenome 3300029140 *Microbiome Permanent Draft Infant fecal microbial communities from Pittsburgh, USA Infant fecal microbial communities from Pittsburgh, USA - NECEvent2014_1_3 Banfield Lab, University of California, Berkeley 3300029140 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant fecal 40.4308 -79.9598 6438386 6471 8 0 13 0 0.0 Metagenome 3300021339 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - U3c1 DOE Joint Genome Institute (JGI) 3300021339 Metagenome Analysis spades v. 3.11.1-check Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9206 -106.9514 433174354 897991 440 24 867 41 SRX3944455 Unrestricted 10.34 Metagenome 3300036045 *Microbiome Permanent Draft Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Balambano_FR2_MetaG (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036045 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rlsimister@gmail.com Rachel Simister No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment -2.651 121.2318 1491124890 2774992 1074 47 1731 78 SRX4020278, SRX5645273 Unrestricted 0.0 Metagenome 3300050230 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Warrenville, Illinois, USA - 79_701_IL_DR_1m_c1_T0_16O DOE Joint Genome Institute (JGI) 3300050230 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 41.84145 -88.2298 946033291 1582526 328 4 541 3 Restricted 11.29 Metagenome 3300003343 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection D2 DOE Joint Genome Institute (JGI) 3300003343 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 27774985 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.534762 -107.782602 63081345 135194 139 1 257 0 SRX1085371, SRX2233511 Unrestricted 0.0 Metagenome 3300029497 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001974-105 Beijing Genomics Institute (BGI) 3300029497 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 105998001 137468 81 0 124 0 0.0 Metagenome 3300011168 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 13 - S13.2.55.1.a - transect 2, repeat 1, age 50-113 years, surface depth). University of Bristol 3300011168 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes EAEloeFadrosh@lbl.gov; maisie.nash@bristol.ac.uk; ama@envs.au.dk Emiley Eloe-Fadrosh; Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 78.90055556 12.07611111 272071 432 2 3 2 13 0.0 Metagenome 3300009159 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG DOE Joint Genome Institute (JGI) 3300009159 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh Yes 29921005 Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 48.2311 -71.2508 1310154043 2413277 759 102 1098 157 SRX2996495 Unrestricted 0.0 Metagenome 3300013905 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - sediment SCG83 University of British Columbia 3300013905 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Sediment Marine 159815 566 0 0 1 0 SRX143192 0.0 Metagenome 3300027952 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N1_0_10 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027952 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380143 -119.2723688 281394208 694546 257 3 478 6 SRX2523200 Unrestricted 0.0 Metagenome 3300042438 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311FE14Z081617_5533 DOE Joint Genome Institute (JGI) 3300042438 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.201 -97.9447 586894995 1632166 786 108 1595 193 Unrestricted 6.81 Metagenome 3300070421 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Alabama, USA - LENO_062-M-20180709-COMP-DNA1 3300070421 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 13130983 42367 60 2 101 4 0.0 Metagenome 3300022576 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 8 Selected contigs with viral hallmark genes Autonomous University of Barcelona 3300022576 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 2141600 2989 0 0 0 0 0.0 Metagenome 3300007990 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159915365 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007990 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 18275282 23428 24 0 40 0 0.0 Metagenome 3300000707 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 39 DOE Joint Genome Institute (JGI) 3300000707 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 10000255 32545 38 0 55 0 SRX4340827 Unrestricted 0.0 Metagenome 3300013225 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100679 University of Pennsylvania 3300013225 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 22197522 39600 15 0 22 0 SRX756415 0.0 Metagenome 3300042757 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S2_20_30 NMDC pilot DOE Joint Genome Institute (JGI) 3300042757 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228379 -119.2717467 50762396 139037 162 22 301 26 SRX2522451 0.0 Metagenome 3300011115 *Microbiome Finished Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May Chunlab, Inc 3300011115 Metagenome Analysis SPAdes 3.8.2 released by JGI data releasing policy No Yes krmoon518@gmail.com; chojc@inha.ac.kr Kira Moon; Jang-Cheon Cho No Environmental Aquatic Lake Freshwater Unclassified Freshwater 37.947421 127.818872 24544035 34373 1 0 0 0 0.0 Metagenome 3300036821 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in New South Wales, Australia - Pe_5 DOE Joint Genome Institute (JGI) 3300036821 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil -33.6 150.0 1053594180 1777691 215 26 369 46 SRX8386852 Unrestricted 15.92 Metagenome 3300041827 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_138 MetaG AgResearch, New Zealand, Mosgeil 3300041827 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1315006274 2639994 294 27 1021 52 0.0 Metagenome 3300060384 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210604_08_09 DOE Joint Genome Institute (JGI) 3300060384 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 604348673 903846 253 142 335 199 Unrestricted 24.55 Metagenome 3300026469 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-B DOE Joint Genome Institute (JGI) 3300026469 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 167044554 427735 165 6 333 15 SRX4803893 Unrestricted 9.52 Metagenome 3300017999 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG DOE Joint Genome Institute (JGI) 3300017999 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 3.8381 -73.3194 600373633 1470323 643 6 1273 11 SRX3936781 Unrestricted 4.0 Metagenome 3300025975 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025975 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.107536 -121.649704 64446846 147911 144 3 220 8 SRX7144658 Unrestricted 0.0 Metagenome 3300005788 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_Marker33_DNA 3300005788 Metagenome Analysis Ray v. 2.3.1, minimum contig length 1kb released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com; randerson@carleton.edu; elks@mit.edu Caroline Fortunato, Caroline Fortunato; Rika Anderson; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 17685726 24222 2 0 0 1 0.0 Metagenome 3300046807 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mores Creek, Idaho City, Idaho, USA - morescreek_2019_sw_WHONDRS-S19S_0085 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300046807 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 43.6481 -115.9889 133952534 211085 225 118 399 160 Unrestricted 0.0 Metagenome 3300031801 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986 DOE Joint Genome Institute (JGI) 3300031801 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 73.0038 -140.0007 1478115376 2981969 1012 81 1667 158 SRX5817066 Unrestricted 15.83 Metagenome 3300032243 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime Ecozone, Canada - Lake 07-028 Genome Quebec 3300032243 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.449413 -65.86015 662866871 1347498 435 91 714 194 0.0 Metagenome 3300022395 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Lake Baghdad, Rottnest Island (WA - Australia) - LBBM1 JM109 AGRF 3300022395 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.994794 115.523776 41343334 76730 33 2 60 4 0.0 Metagenome 3300032304 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 17-061 Genome Quebec 3300032304 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.358443 -68.152578 641716104 1269026 356 64 587 129 0.0 Metagenome 3300013739 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00674 Weill Cornell Medical College 3300013739 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.99 39240836 64453 31 1 29 2 SRX822641 0.0 Metagenome 3300043164 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_3000m_C5_0cm2cm (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043164 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.799 -121.0256 449557717 719719 191 2 350 6 SRX9141700 Unrestricted 69.12 Metagenome 3300049036 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - F2_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049036 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 280442076 582168 479 19 1041 31 Unrestricted 0.0 Metagenome 3300026487 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Leaf surface microbial communities from alfalfa plants in UC Gill Tract Community Farm, Albany, California, United States - DLSL A.R1 DOE Joint Genome Institute (JGI) 3300026487 Metagenome Analysis spades v. 3.11.1 Yes Yes icelab@berkeley.edu Steven Lindow No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf surface 37.8864 -122.2981 298298276 488944 208 20 269 20 SRX5295434, SRX5295435 Unrestricted 0.0 Metagenome 3300044527 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME13Aug2015-rr0981 DOE Joint Genome Institute (JGI) 3300044527 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 812651484 1196804 375 75 473 122 Unrestricted 15.67 Metagenome 3300053145 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere DOE Joint Genome Institute (JGI) 3300053145 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.120965 -123.271442 417540981 605991 101 82 115 97 Unrestricted 14.39 Metagenome 3300040993 *Microbiome Permanent Draft Freshwater lake viral communities from Lake Michigan, near Chicago, USA Freshwater lake viral communities from Lake Michigan, near Chicago, USA- 57Street140513..1V Genewiz Inc., Loyola University 3300040993 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.7904 -87.5781 13970487 29548 13 0 29 0 0.0 Metagenome 3300012562 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100427 University of Pennsylvania 3300012562 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9506627 26307 21 0 28 0 SRX756571 0.0 Metagenome 3300028675 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-003-1 DOE Joint Genome Institute (JGI) 3300028675 Metagenome Analysis spades v. 3.11.1 Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.5775 -110.7896 334458390 604563 209 7 310 14 SRX5356208 Unrestricted 106.88 Metagenome 3300000156 *Microbiome Permanent Draft Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic Ambry Genetics 3300000156 Metagenome Analysis Velvet 1.1.07 released per JGI data release policy No Yes prade@okstate.edu Rolf Prade No Engineered Solid waste Composting Grass Bioreactor Sugar cane bagasse incubating bioreactor -22.080556 -48.997778 1115759095 2019207 743 117 1406 192 0.0 Metagenome 3300035423 *Microbiome Permanent Draft Mouse fecal microbial communities from various locations Fecal microbial communities from mouse strain C57/BL6 in USA - 2-5 Beijing Genomics Institute (BGI) 3300035423 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 40.70606 -73.99703 67786252 102683 83 2 117 0 0.0 Metagenome 3300031669 *Microbiome Permanent Draft Soil microbial communities from Risofladan, Vaasa, Finland Soil microbial communities from Risofladan, Vaasa, Finland - TR-1 DOE Joint Genome Institute (JGI) 3300031669 Metagenome Analysis spades v. 3.12.0 Yes Yes eva.hogfors-ronnholm@novia.fi Eva Hogfors-Ronnholm Yes Environmental Terrestrial Coastal area Soil Acid sulfate soil soil 63.0472 21.7116 1700411937 3753350 539 9 798 20 SRX5356280 Unrestricted 35.98 Metagenome 2058419003 *Microbiome Permanent Draft Saline water microbial communities from Great Salt Lake, Utah Saline water microbial communities from Great Salt Lake, Utah, USA - North Arm Stromatolite DOE Joint Genome Institute (JGI) 2058419003 Metagenome Analysis released based on JGI ITS No Yes bcweimer@ucdavis.edu Bart Weimer, Bart C. Weimer No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline water 41.454358 -112.666397 52414178 130059 16 0 39 0 Unrestricted 0.0 Metagenome 3300001142 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M1 DOE Joint Genome Institute (JGI) 3300001142 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 1720555 4981 46 17 82 22 SRX3312004 Unrestricted 0.0 Metagenome 3300005367 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG DOE Joint Genome Institute (JGI) 3300005367 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 5450419969 14605934 3801 318 6415 610 SRX2740271 Unrestricted 0.0 Metagenome 7000000058 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764062976 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000058 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 110069711 191599 0 0 0 0 0.0 Metagenome 3300028903 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_RA_Asp DOE Joint Genome Institute (JGI) 3300028903 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 234987191 357582 169 0 245 1 SRX5355877 Unrestricted 35.26 Metagenome 3300036428 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T50 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036428 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 164512688 255220 78 11 108 12 SRX7705825, SRX7705826 Unrestricted 0.0 Metagenome 3300049227 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from South Carolina, USA - timsbranch_2019_sed_WHONDRS-S19S_0057 DOE Joint Genome Institute (JGI) 3300049227 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 33.337475 -81.718207 164762081 422778 462 2 947 3 Unrestricted 8.64 Metagenome 3300011447 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - seawater enrichment SCG57 University of British Columbia 3300011447 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 2125850 4475 3 0 6 0 SRX143166 0.0 Metagenome 3300042517 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Jul2017-rr0589 DOE Joint Genome Institute (JGI) 3300042517 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1049674037 1592302 353 108 506 151 Unrestricted 16.93 Metagenome 3300049907 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume viral communities from North Pacific Ocean - CTD-AT42-06-003-450m-0.03 v DOE Joint Genome Institute (JGI) 3300049907 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 8.39977 -104.9807 212865533 501464 136 13 271 16 Restricted 163.71 Metagenome 3300003414 *Microbiome Draft Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- FS08_3 v2 (version 2) DOE Joint Genome Institute (JGI) 3300003414 Metagenome Analysis released based on JGI ITS No Yes jlm80@psu.edu Jennifer Macalady Yes 25620962 Environmental Aquatic Groundwater Freshwater Cave water Groundwater 43.383333 12.95 1498780 1232 0 0 1 0 Unrestricted 0.0 Metagenome 3300007880 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 160643649 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007880 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 3485190 5991 4 0 10 0 0.0 Metagenome 3300042831 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150 NMDC pilot DOE Joint Genome Institute (JGI) 3300042831 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92045766 -106.94845279 802208047 1905048 438 9 772 27 SRX5354692 0.0 Metagenome 3300028223 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Organic Lake, Antarctica - Site 233 with 3.0UM filter - spades J. Craig Venter Institute 3300028223 Metagenome Analysis Spades v. 3.11.1 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 32528303 56177 15 5 16 7 0.0 Metagenome 3300070828 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_003-M-20200709-COMP-DNA1 3300070828 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 5455484 17790 36 9 76 14 0.0 Metagenome 3300025603 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKE (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025603 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline Lake -68.4725 78.188 387727814 654131 186 26 233 41 SRX2746863 Unrestricted 0.0 Metagenome 3300039921 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONZ_005-M-20160714-COMP-DNA1 Battelle Memorial Institute 3300039921 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.10077 -96.56309 21007611 61971 86 3 172 3 0.0 Metagenome 3300000071 *Microbiome Permanent Draft Freshwater microbial plankton communities from Lake Konstanz, Germany Freshwater microbial plankton communities from Lake Konstanz, Germany, sample GS698_0.8 um size class J. Craig Venter Institute (JCVI) 3300000071 Metagenome Analysis released per JGI data release policy No Yes david.schleheck@uni-konstanz.de David Schleheck No Environmental Aquatic Lentic Freshwater Epilimnion Freshwater 47.451381 9.073833 0 0 0 0 0 0 0.0 Metagenome 3300014653 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01197 Weill Cornell Medical College 3300014653 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.82 -73.92 28150470 47991 12 0 25 0 SRX823152 0.0 Metagenome 3300020403 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145) CEA Genoscope 3300020403 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 18.5679 66.4581 965596674 2410552 510 54 739 96 0.0 Metagenome 3300046681 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere DOE Joint Genome Institute (JGI) 3300046681 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.121 -123.2714 593585389 1052093 285 17 476 28 Unrestricted 13.78 Metagenome 3300002548 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert microbial communities from Antarctic Dry Valleys - UQ255 DOE Joint Genome Institute (JGI) 3300002548 Metagenome Analysis Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert -78.0486 163.8053 67279807 172054 158 0 275 1 SRX2555526 Unrestricted 0.0 Metagenome 3300031687 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #125 DOE Joint Genome Institute (JGI) 3300031687 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5596 77.8957 410396926 914988 224 281 263 477 SRX5650075 Unrestricted 0.0 Metagenome 3300039201 *Microbiome Permanent Draft Freshwater sediment microbial communities from Chandeleur Islands, USA Subtidal sediment core microbial communities from Chandeleur Islands, USA - ASubC4 University of Alabama 3300039201 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Wetlands Freshwater Sediment Subtidal sediment core 29.862806 -88.841194 23149034 63910 48 1 77 3 0.0 Metagenome 3300020322 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100002003 (ERX556138-ERR599051) CEA Genoscope 3300020322 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 6.3929 -103.0691 284343711 640468 238 12 397 36 0.0 Metagenome 3300028866 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2 DOE Joint Genome Institute (JGI) 3300028866 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 1035680738 1799873 330 14 442 29 SRX5356842 Unrestricted 0.0 Metagenome 3300013673 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100123 University of Pennsylvania 3300013673 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8795103 22088 10 0 20 0 SRX756709 0.0 Metagenome 3300069233 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Chase Lake Wetlands, North Dakota, USA - WOOD_002-M-20210708-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069233 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 47.136134 -99.232896 1966886417 4438217 1018 22 1868 38 0.0 Metagenome 7000000586 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 159753524 replicate 1 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000586 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 112108 209 0 0 0 0 SRX023395 0.0 Metagenome 3300009793 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S3_30_40 DOE Joint Genome Institute (JGI) 3300009793 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen Yes 29920461 Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228508 -119.2716818 40157676 92722 70 2 140 1 SRX2523204 Unrestricted 0.0 Metagenome 3300013338 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01243 Weill Cornell Medical College 3300013338 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.62 -73.97 18001333 31414 9 0 22 0 SRX823198 0.0 Metagenome 3300059446 *Microbiome Permanent Draft Sorghum rhizosphere and bulk soil microbial communities from University of Arizona Maricopa Agricultural Center, AZ, USA Soil microbial communities from unplanted plot in University of Arizona Maricopa Agricultural Center, AZ, USA - plot3ctr0-15_20210708 DOE Joint Genome Institute (JGI) 3300059446 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Agricultural land Soil Unclassified Soil 33.07735 -111.974819 672810403 1511803 661 15 1189 32 Unrestricted 8.49 Metagenome 3300027759 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027759 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 48.2311 -71.2508 788458514 1542650 277 33 383 53 SRX2996442 Unrestricted 0.0 Metagenome 3300055516 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.2W.8 SIP fraction DOE Joint Genome Institute (JGI) 3300055516 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 226507546 440688 99 4 173 1 Unrestricted 11.77 Metagenome 2199352024 *Microbiome Permanent Draft Soil microbial communities from Rothamsted, UK, for project Deep Soil Bare-fallow DEEP SOIL Argonne National Laboratory 2199352024 Metagenome Analysis CLC bioworkbench released per JGI data release policy No Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Soil 56.03 -2.82 227495341 399540 0 0 0 0 0.0 Metagenome 3300035335 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada -18E_3b_10_7 mgh University of Alberta 3300035335 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified wastewater 56.7292 -111.3885 44990320 57735 26 0 29 0 0.0 Metagenome 3300019938 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States - IW8Nov16_MG DOE Joint Genome Institute (JGI) 3300019938 Metagenome Analysis spades v. 3.10.1 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Unclassified freshwater 38.7906 -75.1638 73455286 187544 141 9 231 19 SRX3983686 Unrestricted 25.58 Metagenome 3300034774 *Microbiome Permanent Draft St. Lawrence estuary microbiome Marine microbial community of the St. Lawrence Estuary, Canada - S21_FL_PA_320_04D Genome Quebec 3300034774 Metagenome Analysis Megahit v. 1.0.6 released by JGI data releasing policy Yes Yes susanne.kraemer@ed.ac.uk; dwalsh@concordia.ca Susanne Kraemer; David Walsh No Environmental Aquatic Coastal Marine Unclassified marine 49.056 -67.17 808094400 1650101 428 335 783 589 0.0 Metagenome 3300037525 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR13_1 DOE Joint Genome Institute (JGI) 3300037525 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Crustal Fluids crustal fluids 47.7583 -127.7622 16257520 35850 27 4 53 6 SRX9096400 Unrestricted 1318.76 Metagenome 3300040330 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 067B_R1 University of Maryland 3300040330 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.53923 19.01723 4842502 12963 26 1 64 2 0.0 Metagenome 3300025287 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP-131 (SPAdes) DOE Joint Genome Institute (JGI) 3300025287 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es; mbsulli@gmail.com Silvia G. Acinas; Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 17.4274 -59.8286 177483095 373819 92 0 157 0 SRX4924344 Unrestricted 0.0 Metagenome 3300028428 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0048 megahit assembly University of Michigan 3300028428 Metagenome Analysis Megahit v. 1.1.2 IMGSUPP-3397 No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lentic Freshwater Unclassified Freshwater, plankton 41.7026 -83.236 343181729 536676 116 39 145 85 0.0 Metagenome 3300036903 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 P2 20-24 DOE Joint Genome Institute (JGI) 3300036903 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0472 543749782 960806 160 3 300 5 SRX8138497 Unrestricted 9.42 Metagenome 3300017792 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG DOE Joint Genome Institute (JGI) 3300017792 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil switchgrass rhizosphere 42.3948 -85.3738 3055113792 6603289 2503 203 4074 342 SRX4808760 Unrestricted 0.0 Metagenome 3300023053 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0898-MG DOE Joint Genome Institute (JGI) 3300023053 Metagenome Analysis spades v. 3.11.1 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 287424359 463852 208 15 238 17 SRX4370274 Unrestricted 24.78 Metagenome 3300032189 *Microbiome Permanent Draft Lab enriched soil microbial communities from farm land in Gulf Coast, Texas, United States Lab enriched soil microbial communities from farm land in Gulf Coast, Texas, United States - BPC Ehime University 3300032189 Metagenome Analysis Newbler v. 2.6 released by JGI data releasing policy No Yes morij@yokohama-cu.ac.jp Jiro Mori No Environmental Terrestrial Unclassified Soil Agricultural land Soil 29.0 -96.0 28346583 75652 20 0 24 0 0.0 Metagenome 3300034090 *Microbiome Permanent Draft Lab enriched peat soil microbial communities from two peatlands near Ithaca, NY, United States Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N DOE Joint Genome Institute (JGI) 3300034090 Metagenome Analysis spades v. 3.13.0 Yes Yes rer26@cornell.edu Ruth Richardson No Environmental Terrestrial Wetlands Soil Peat peat soil 42.3286 -76.4792 1310813297 3299488 990 6 1820 11 SRX7542980 Unrestricted 0.0 Metagenome 3300013932 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway plastic -P01258 Weill Cornell Medical College 3300013932 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Plastic surface city subway plastic 40.62 -73.97 24583329 46894 12 0 23 0 SRX823211 0.0 Metagenome 3300042014 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 DOE Joint Genome Institute (JGI) 3300042014 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.8942 -103.685 420036069 1021793 489 54 874 95 SRX14829263 Unrestricted 7.55 Metagenome 3300045012 *Microbiome Permanent Draft Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA - PH 28 years plot 9 DOE Joint Genome Institute (JGI) 3300045012 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes luizdomeignoz@gmail.com Luiz Domeignoz Horta No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 42.303 -72.1228 2175804334 3594401 357 23 604 44 SRX15792995 Unrestricted 13.38 Metagenome 3300070466 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_002-M-20190701-COMP-DNA1 3300070466 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 11698476 31195 31 10 41 15 0.0 Metagenome 3300031344 *Microbiome Permanent Draft Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG DOE Joint Genome Institute (JGI) 3300031344 Metagenome Analysis spades v. 3.12.0 Yes Yes rbneum@uw.edu Rebecca Neumann No Host-associated Plants Rhizosphere Roots Soil rhizosphere 47.6516 -122.3045 2633848214 5848023 1533 15 2608 36 SRX5345976 Unrestricted 9.32 Metagenome 3300021475 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O DOE Joint Genome Institute (JGI) 3300021475 Metagenome Analysis spades v. 3.11.1-check Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 2710494968 6266586 918 132 1745 222 SRX4023410 Unrestricted 7.86 Metagenome 3300069438 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone Northern Range (Frog Rock), Northern Rockies, WY, USA - YELL_052-M-20180711-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069438 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 44.95348 -110.53914 10331390 32510 57 9 130 19 0.0 Metagenome 3300050571 *Microbiome Permanent Draft Interactions between chemoautotrophic and heterotrophic bacteria Seawater microbial communities from North Pacific Ocean, California, USA - SR7_460 DOE Joint Genome Institute (JGI) 3300050571 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes asantoro@ucsb.edu Alyson Santoro No Environmental Aquatic Oceanic Marine Unclassified Seawater 34.25 -119.91 575865005 761946 203 4 259 4 Unrestricted 139.26 Metagenome 3300031923 *Microbiome Permanent Draft Microbial communities from the deep biosphere Spring water microbial communities from the Voltri Massif travertine in Liguria, Italy - LIG_GORupB_2013 re-assembly The Marine Biological Laboratory 3300031923 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Alkaline Non-marine Saline and Alkaline Unclassified Spring water 44.597 8.7833 384526484 953415 302 65 630 126 SRX748867, SRX1055341, SRX1055347, SRX1055348 0.0 Metagenome 3300008100 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 158944319 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008100 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 94952779 133926 92 0 137 0 0.0 Metagenome 3300005523 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265 DOE Joint Genome Institute (JGI) 3300005523 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 883976190 2518976 743 39 1359 54 SRX2782444 Unrestricted 0.0 Metagenome 3300024185 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 84D DOE Joint Genome Institute (JGI) 3300024185 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 237921706 486296 159 17 214 35 SRX4474204 Unrestricted 24.6 Metagenome 3300036866 *Microbiome Permanent Draft Soil microbial communities from a coastal freshwater wetland in North Carolina, United States Soil microbial communities from coastal freshwater wetland in North Carolina, United States - 8Pre DOE Joint Genome Institute (JGI) 3300036866 Metagenome Analysis metaspades v. 3.13.0 Yes Yes peraltaa@ecu.edu Ariane Peralta No Environmental Terrestrial Wetlands Soil Unclassified soil 35.8959 -76.1658 879160718 1465207 364 7 625 18 SRX8387630 Unrestricted 14.53 Metagenome 3300025269 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP2969 (SPAdes) DOE Joint Genome Institute (JGI) 3300025269 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 32.08 -17.26 135738443 253734 134 0 217 0 SRX1981966 Unrestricted 0.0 Metagenome 3300040152 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA Prairie soil microbial communities from Boone County, Iowa, USA - P31-LM-July2012 Iowa State University 3300040152 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land Prairie soil 42.01375 -93.783837 9563044 32816 88 10 157 18 0.0 Metagenome 3300060647 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Yellowstone NP, Wyoming, USA - YELL_009-M-20210706-comp-1 DOE Joint Genome Institute (JGI) 3300060647 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 44.970313 -110.501884 1136012974 1986999 520 82 911 101 Unrestricted 17.5 Metagenome 3300027519 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius vacuus BELIZE.2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027519 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 584567118 635143 55 2 65 1 SRX3340721 Unrestricted 0.0 Metagenome 7000000510 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 370425937 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000510 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 142498461 264987 0 0 0 0 0.0 Metagenome 3300039966 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 076B_R1 University of Maryland 3300039966 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.58763 19.0298 20251313 38638 47 3 54 3 0.0 Metagenome 3300015067 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G7A, Adjacent to main proglacial river, mid transect (Watson river)) University of Bristol 3300015067 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.082258 -50.322515 52942968 127580 84 20 164 30 0.0 Metagenome 3300027646 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027646 Metagenome Analysis spades v. 3.11.1 Yes Yes cpan@ou.edu Chongle Pan No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 9.1086 -79.8436 336227422 901027 221 5 397 19 SRX2779535 Unrestricted 0.0 Metagenome 3300005104 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgHAC DOE Joint Genome Institute (JGI) 3300005104 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 150407432 530041 324 12 680 24 SRX2521237 Unrestricted 0.0 Metagenome 3300039046 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample42 King Abdulaziz City for Science and Technology (KACST) 3300039046 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 27.53 34.3 58448582 123545 61 0 105 0 SRX1097611 0.0 Metagenome 3300027358 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F11 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027358 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 44651962 58200 51 0 50 0 SRX3195100 Unrestricted 0.0 Metagenome 3300009032 *Microbiome Permanent Draft Freshwater microbial communities from lake liftoff mats and glacier meltwater in Antarctica Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-05 DOE Joint Genome Institute (JGI) 3300009032 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes slonczewski@kenyon.edu Joan Slonczewski No Environmental Aquatic Ice Freshwater Liftoff microbial mat Freshwater -77.605 163.163 2995012491 5073696 1594 44 2302 99 SRX2522270 Unrestricted 0.0 Metagenome 3300018055 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coex DOE Joint Genome Institute (JGI) 3300018055 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 .9 652415120 1479276 723 11 1442 26 SRX3939033 Unrestricted 4.72 Metagenome 3300042233 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D222_3 DOE Joint Genome Institute (JGI) 3300042233 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 148041799 199506 98 7 145 14 Unrestricted 71.53 Metagenome 3300038469 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Sediment microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_West_4 DOE Joint Genome Institute (JGI) 3300038469 Metagenome Analysis metaspades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Wetlands Marine Sediment sediment 26.469 -80.4434 2949184298 4564579 957 5 1612 9 SRX9405629 Unrestricted 14.27 Metagenome 3300050188 *Microbiome Permanent Draft Plant-associated microbial communities from Atacama desert, Huara, Chile Plant-associated microbial communities from Atacama desert, Huara, Chile - Equisetum (HUA) University of Wisconsin, Madison 3300050188 Metagenome Analysis Custom JGI assembly. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Plants Unclassified Phyllosphere Unclassified Plant-associated -19.752535 -69.404068 135419275 237822 70 13 130 19 SRX6486517 0.0 Metagenome 3300015316 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_31MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015316 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 184297398 310071 5 72 14 134 SRX3922903 Unrestricted 7.67 Metagenome 3300033514 *Microbiome Permanent Draft Sinkhole microbial mat communities from Lake Huron, Michigan, USA Sinkhole microbial mat communities from Lake Huron, Michigan, USA - SG0421 University of Michigan 3300033514 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy Yes Yes sgrim01@gmail.com Sharon Grim No Environmental Aquatic Sinkhole Freshwater Unclassified microbial mat 45.19843 -83.32721 336714154 425978 150 7 186 4 0.0 Metagenome 3300004808 *Microbiome Permanent Draft Wetland sediment microbial communities from St. Louis River estuary, Michigan under dissolved organic matter induced mercury methylation Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh DOE Joint Genome Institute (JGI) 3300004808 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes diana.nemergut@duke.edu, diana.nemergut@duke.edu.deleted Diana Nemergut Yes 29632744 Environmental Aquatic Wetlands Freshwater Sediment Wetland sediment 46.6972164 -92.3279105 1293128678 3928941 1408 74 3486 143 SRX2775494 Unrestricted 0.0 Metagenome 3300028821 *Microbiome Permanent Draft Axial Seamount Reassemblies Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS908_Marker33_DNA IDBA_UD reassembly Marine Biological Laboratory 3300028821 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes cfortunato@gmail.com; randerson@carleton.edu; elks@mit.edu Caroline Fortunato; Rika Anderson; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 226318478 510325 614 16 962 37 0.0 Metagenome 3300040281 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Woodworth, Northern Plains, ND, USA - WOOD_044-O-20170711-COMP-DNA1 Battelle Memorial Institute 3300040281 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12823 -99.24136 6726656 19728 60 6 101 13 0.0 Metagenome 3300007816 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_9_15 DOE Joint Genome Institute (JGI) 3300007816 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jim.fredrickson@pnnl.gov, jim.fredrickson@pnnl.gov; binskeep@montana.edu Jim Fredrickson, Jim Fredrickson; William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.7315 -110.7113 3 53815935 190487 1 0 3 0 SRX2753793 Unrestricted 0.0 Metagenome 3300037170 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 S1 20-24 DOE Joint Genome Institute (JGI) 3300037170 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3531 19.0474 700053682 1143704 186 3 286 5 SRX8144475 Unrestricted 16.01 Metagenome 3300038608 *Microbiome Permanent Draft Oil contaminated soil microbial communities from a military base in Taszar, Hungary Oil contaminated soil microbial communities from a military base in Taszar, Hungary - F1_6 University of Szeged 3300038608 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Unclassified Soil Oil-contaminated Oil contaminated soil 46.37386 17.90063 10669360 19421 15 0 17 0 0.0 Metagenome 3300030049 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_1 DOE Joint Genome Institute (JGI) 3300030049 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 846125747 1761976 486 155 767 236 SRX5355759 Unrestricted 10.08 Metagenome 3300010371 *Microbiome Permanent Draft Terrestrial soil microbial communities with and without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1 DOE Joint Genome Institute (JGI) 3300010371 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tiedjej@msu.edu James Tiedje No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 42.3938 -85.3708 4854878320 10100282 3317 381 5453 699 SRX3295460 Unrestricted 0.0 Metagenome 3300038487 *Microbiome Permanent Draft Acid mine drainage microbial biofilm communities from Richmond Mine, California, USA Acid mine drainage biofilm communities from Richmond mine site C75, Iron Mt, CA, USA - AMDC750910 University of California, Berkeley 3300038487 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 40.67542 -122.53025 12568986 15639 9 1 17 0 0.0 Metagenome 3300035228 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P4_June_2011_10m DOE Joint Genome Institute (JGI) 3300035228 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 48.65 -126.6666 817384573 1907979 383 74 662 129 SRX8189296 Unrestricted 15.28 Metagenome 3300069517 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Woodworth, Northern Plains, ND, USA - WOOD_043-M-20170711-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069517 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12823 -99.24136 22540423 66491 57 4 117 9 0.0 Metagenome 3300036675 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - T0B DOE Joint Genome Institute (JGI) 3300036675 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 261083494 764087 449 20 831 31 SRX8815225 Unrestricted 5.34 Metagenome 3300001508 *Microbiome Permanent Draft Human axilla skin microbial communities from the University of Liverpool, UK Human axilla skin microbial communities from the University of Liverpool, UK - AX09 3300001508 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Host-associated Mammals: Human Skin Integumentary system Axilla/Armpit Human axilla skin 53.3484 -3.009 19258930 40928 18 0 24 0 0.0 Metagenome 3300015089 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8A, Adjacent to main proglacial river, end of transect (Watson river)) University of Bristol 3300015089 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.05702 -50.459796 128282042 304977 146 11 219 10 0.0 Metagenome 3300027193 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027193 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 135996761 361387 152 15 201 30 SRX2753583 Unrestricted 22.55 Metagenome 3300024428 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 32D DOE Joint Genome Institute (JGI) 3300024428 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 309853875 609747 195 18 284 28 SRX4459060 Unrestricted 17.21 Metagenome 3300017635 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - K13-07 University of Michigan 3300017635 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.52346 -83.666 29256286 40880 18 2 30 1 0.0 Metagenome 3300006666 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T14 (2) BES Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006666 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 44366778 80208 54 0 82 0 0.0 Metagenome 3300006139 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t14_683P_control - viral_metagenome University of Texas Southwestern Medical Center 3300006139 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 123966503 272649 85 0 149 0 0.0 Metagenome 3300038774 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog68 BILS 3300038774 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 3771916 9209 7 0 12 0 ERX1594890 0.0 Metagenome 3300015192 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Storglaciaren, Tarfala, Sweden (Sample st-2a, rock/snow interface) University of Bristol 3300015192 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Unclassified Soil Unclassified Glacier forefield soil 67.899243 18.344347 5.6 236040965 476844 164 16 280 25 0.0 Metagenome 3300054069 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_11_100 re-annotation DOE Joint Genome Institute (JGI) 3300054069 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 257442604 495967 188 3 279 4 SRX3003286 0.0 Metagenome 3300032257 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrite DOE Joint Genome Institute (JGI) 3300032257 Metagenome Analysis spades v. 3.13.0 Yes Yes jbeam@bigelow.org; demerson@bigelow.org Jake Beam; David Emerson No Environmental Aquatic Coastal Marine Sediment microbial mat 43.8603 -69.5781 854799189 1601779 616 40 883 67 SRX5822397 Unrestricted 27.57 Metagenome 3300028073 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Colum_RepB_8d DOE Joint Genome Institute (JGI) 3300028073 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 202213118 396619 175 6 266 10 SRX5245408 Unrestricted 11.76 Metagenome 3300010217 *Microbiome Permanent Draft Sitobion avenae (English Grain Aphid) hemolymph microbial communities from Henan Dengzhou, China - Region2 Sitobion avenae (English Grain Aphid) hemolymph microbial communities from Henan Dengzhou, China - Region2 DNAVision 3300010217 Metagenome Analysis velvet released per JGI data release policy No Yes sarerazack@icloud.com Abdoul Razack SARE No Host-associated Arthropoda: Insects Hemolymph Circulatory system Unclassified insect hemolymph 32.68 112.08 204455793 153131 3 2 0 1 0.0 Metagenome 3300012194 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00714 Weill Cornell Medical College 3300012194 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.87 -73.9 30395460 47814 13 4 31 4 SRX822681 0.0 Metagenome 3300025159 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 3 (version 2) DOE Joint Genome Institute (JGI) 3300025159 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 26033198 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 1226334314 2650960 1166 10 2046 17 SRX1984092 Unrestricted 0.0 Metagenome 3300043592 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 106-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043592 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9868 -107.0049 565562294 1431164 396 8 779 11 Unrestricted 7.27 Metagenome 3300049077 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - K2_A_BS (version 2) DOE Joint Genome Institute (JGI) 3300049077 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 131906684 299925 381 8 835 14 Unrestricted 0.0 Metagenome 3300026798 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A3-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026798 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 17679026 61012 74 1 111 2 SRX2576256 Unrestricted 0.0 Metagenome 3300000697 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 71 DOE Joint Genome Institute (JGI) 3300000697 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 8270441 25372 31 0 59 0 SRX4341346 Unrestricted 0.0 Metagenome 3300014109 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_110 The George Washington University (GWU) 3300014109 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 141754154 255713 141 1 229 3 SRX656248 0.0 Metagenome 3300000901 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 DOE Joint Genome Institute (JGI) 3300000901 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 12638430 41068 109 37 201 71 SRX2021672, SRX1985376, SRX1985375 Unrestricted 0.0 Metagenome 3300042951 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-321 Genome Quebec 3300042951 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.593529 -119.639537 1356810136 3002095 473 194 795 331 0.0 Metagenome 3300046056 *Microbiome Permanent Draft Halite microbial communities from Atacama Desert, Chile Halite microbial communities from Salar Grande, Atacama Desert, Chile - SG3 Novogene 3300046056 Metagenome Analysis metaWRAP v. 1.3.2 No Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Halite Rock-dwelling (endoliths) Unclassified Halite -20.952 -70.016 73937402 86818 9 3 13 3 0.0 Metagenome 3300055494 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.1W.8 SIP fraction DOE Joint Genome Institute (JGI) 3300055494 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 277766953 507706 168 13 303 22 Unrestricted 12.24 Metagenome 3300000221 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P12 2000m DOE Joint Genome Institute (JGI) 3300000221 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 25171894 Environmental Aquatic Oceanic Marine Aphotic zone Marine 48.97 -130.666667 40682411 113358 31 5 68 9 Unrestricted 0.0 Metagenome 3300049598 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA2 DOE Joint Genome Institute (JGI) 3300049598 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 427544183 1094465 416 6 768 10 Unrestricted 7.14 Metagenome 3300029788 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 027_10_28_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029788 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 235792127 330839 279 0 387 0 0.0 Metagenome 3300009975 *Microbiome Permanent Draft Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_187 metaG DOE Joint Genome Institute (JGI) 3300009975 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes esinger@lbl.gov; twoyke@lbl.gov Esther Singer; Tanja Woyke No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass associated 30.387 -97.7301 28034899 52842 15 81 16 146 SRX2524161 Unrestricted 0.0 Metagenome 3300054087 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100 re-annotation DOE Joint Genome Institute (JGI) 3300054087 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 631941076 1087765 280 4 464 2 SRX3959980 0.0 Metagenome 3300022811 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY5 Version 2 University of New South Wales 3300022811 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 26856339 51997 26 0 38 0 0.0 Metagenome 3300045020 *Microbiome Permanent Draft Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA - PH 28 years plot 6 DOE Joint Genome Institute (JGI) 3300045020 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes luizdomeignoz@gmail.com Luiz Domeignoz Horta No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 42.303 -72.1228 1635403884 2688221 391 72 629 116 SRX15792999 Unrestricted 14.33 Metagenome 3300022537 *Microbiome Permanent Draft Abyssal plain sediment microbial communities from Eastern Gulf of Mexico, Atlantic Ocean Abyssal plain sediment microbial communities from Eastern Gulf of Mexico, Atlantic Ocean - EGM026 re-assembly University of Calgary 3300022537 Metagenome Analysis SPAdes v. 3.11.0 released by JGI data releasing policy Yes Yes dongxiyang@tio.org.cn Xiyang DONG No Environmental Aquatic Sediment Marine Unclassified Abyssal plain sediment 25.3043 -90.0659 149859512 264505 93 9 189 14 0.0 Metagenome 3300053096 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere DOE Joint Genome Institute (JGI) 3300053096 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.588192 -123.19405 691503704 1202402 330 73 543 112 Unrestricted 8.82 Metagenome 3300042743 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T2_30-Apr-14 NMDC pilot DOE Joint Genome Institute (JGI) 3300042743 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 172050903 411153 384 129 663 205 SRX2838889 0.0 Metagenome 3300055273 *Microbiome Permanent Draft Soil microbial communities from various environments and locations in the USA Soil microbial communities from pasture in Falmouth, Massachusetts, USA - PETF_BTM DOE Joint Genome Institute (JGI) 3300055273 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nancy.hess@pnnl.gov Nancy Hess No Environmental Terrestrial Pasture Soil Unclassified Soil 41.5532 -70.6398 2126605349 3403626 640 10 1065 14 Unrestricted 13.88 Metagenome 3300026501 *Microbiome Permanent Draft Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 PR4 DOE Joint Genome Institute (JGI) 3300026501 Metagenome Analysis spades v. 3.11.1 Yes Yes ccraft@indiana.edu Chris Craft No Environmental Aquatic Wetlands Freshwater Sediment sediment 31.3377 -81.4644 241653245 618792 473 6 816 9 SRX4796516 Unrestricted 6.96 Metagenome 3300029016 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 272_12M Beijing Genomics Institute (BGI) 3300029016 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 82927920 90670 63 0 86 0 ERX491051 0.0 Metagenome 3300056712 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.4C.11 SIP fraction DOE Joint Genome Institute (JGI) 3300056712 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 147223080 261469 142 18 259 18 Unrestricted 16.98 Metagenome 3300014647 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01353 Weill Cornell Medical College 3300014647 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.84 -73.84 30889379 38525 12 0 17 0 SRX823293 0.0 Metagenome 3300048024 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_200122.NP1 DOE Joint Genome Institute (JGI) 3300048024 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 750884777 1636683 452 82 654 112 Unrestricted 12.31 Metagenome 3300006875 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA DOE Joint Genome Institute (JGI) 3300006875 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 991675807 2829961 750 128 1336 255 SRX2857879 Unrestricted 0.0 Metagenome 3300009603 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904 DOE Joint Genome Institute (JGI) 3300009603 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 43.49 7.9 371761810 739719 237 0 368 0 SRX2753835 Unrestricted 0.0 Metagenome 3300044298 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T4 D DOE Joint Genome Institute (JGI) 3300044298 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.6935 -64.1498 395046670 941746 17 0 21 2 Unrestricted 25.61 Metagenome 3300057156 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2020-0118 DOE Joint Genome Institute (JGI) 3300057156 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.76265 -83.329 692476921 1469042 382 126 611 179 Unrestricted 21.38 Metagenome 3300029367 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 082_5_2_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029367 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 57288180 67614 100 0 109 0 0.0 Metagenome 3300037549 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 1-5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037549 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0469 1272465259 2575906 627 89 1006 132 SRX4415317, SRX8127808 Unrestricted 0.0 Metagenome 3300014055 *Microbiome Permanent Draft Sewage treatment plant microbial communities from Vermont, USA Sewage treatment plant microbial communities from Vermont, USA - ANOX_W Norwich University 3300014055 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 27610223 Engineered Wastewater Unclassified Industrial wastewater Unclassified Sewage treatment plant 43.727094 -72.425964 417698152 975644 223 13 454 24 SRX1057363 0.0 Metagenome 7000000522 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159611913 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000522 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 16223 17 0 0 0 0 0.0 Metagenome 3300020386 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000609 (ERX555990-ERR599038) CEA Genoscope 3300020386 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 0.0095 -153.7143 874589468 2203507 448 31 771 70 0.0 Metagenome 3300037471 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 DOE Joint Genome Institute (JGI) 3300037471 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 37.9315 -122.0212 2238950161 3659765 745 66 1130 96 Unrestricted 18.11 Metagenome 3300035094 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - C5-14 Autonomous University of Barcelona 3300035094 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 74971571 309276 845 0 1483 0 0.0 Metagenome 3300025005 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 0.2 um filter (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025005 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 384652201 730055 543 8 881 11 SRX2770551 Unrestricted 0.0 Metagenome 3300022418 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1OPP1 JM115 AGRF 3300022418 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 49659538 87312 39 0 64 0 0.0 Metagenome 3300029389 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 094_5_3_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029389 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 204122158 285488 222 0 334 0 0.0 Metagenome 3300032092 *Microbiome Permanent Draft Freshwater fungal communities from various locations Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121 DOE Joint Genome Institute (JGI) 3300032092 Metagenome Analysis spades v. 3.12.0 Yes Yes tyjames@umich.edu Timothy Y. James No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.8268 -83.1913 3105944460 6328607 1189 277 1662 414 SRX6420491 Unrestricted 18.8 Metagenome 3300025793 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWB_D1 (SPAdes) DOE Joint Genome Institute (JGI) 3300025793 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 37.926434 -122.509186 181792879 364894 302 4 417 6 SRX7142928 Unrestricted 0.0 Metagenome 3300071124 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_001-O-20170802-COMP-DNA1 3300071124 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 47788155 139407 77 13 160 25 0.0 Metagenome 3300045583 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Ohio River, Illinois, USA - NASQAN2010_190 DOE Joint Genome Institute (JGI) 3300045583 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 37.2031 -89.0417 513244317 1310158 646 156 1085 275 Unrestricted 0.0 Metagenome 3300040262 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_002-M-20131024-COMP-DNA1 Argonne National Laboratory 3300040262 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 7831448 20388 17 2 30 2 ERX2133931 0.0 Metagenome 3300027832 *Microbiome Permanent Draft Freshwater microbial communities from lake liftoff mats and glacier meltwater in Antarctica Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027832 Metagenome Analysis spades v. 3.11.1 Yes Yes slonczewski@kenyon.edu Joan Slonczewski No Environmental Aquatic Ice Freshwater Glacier meltwater Freshwater -77.714 162.445 1706526291 2551898 307 65 367 79 SRX2753508 Unrestricted 0.0 Metagenome 3300046171 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_PBmetag_191002.NPB DOE Joint Genome Institute (JGI) 3300046171 Metagenome Analysis metaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 497841817 561321 244 5 226 5 Unrestricted 0.0 Metagenome 3300031177 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_8 DOE Joint Genome Institute (JGI) 3300031177 Metagenome Analysis spades v. 3.12.0 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 116126418 157795 106 0 135 0 SRX5661505 Unrestricted 116.37 Metagenome 3300020019 *Microbiome Permanent Draft Freshwater viral communities from Chicago Sanitary Ship Canal, USA Freshwater viral communities from Cal-Sag channel, Illinois, USA - 2 University of Illinois-Urbana Champaign 3300020019 Metagenome Analysis SPADES v3.10.1 released by JGI data releasing policy No Yes wtliu@illinois.edu Wen-Tso Liu No Environmental Aquatic River Freshwater Unclassified Freshwater 41.69666 -87.93583 30233539 49653 9 1 10 5 0.0 Metagenome 3300040775 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Etang de Berre, Marignane, France - D26a Genopole Toulouse Midi-Pyrenees 3300040775 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.4847 5.188 130097085 263959 154 20 270 35 0.0 Metagenome 3300013183 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100287 University of Pennsylvania 3300013183 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 15390023 37102 9 0 24 0 SRX756614 0.0 Metagenome 3300011453 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00967 Weill Cornell Medical College 3300011453 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.82 10759488 16926 11 0 14 0 SRX822929 0.0 Metagenome 3300046723 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 soil DOE Joint Genome Institute (JGI) 3300046723 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.588007 -123.192696 6.73 881924442 1473136 291 30 535 49 Unrestricted 13.74 Metagenome 3300043254 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_12 (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043254 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 605280800 1008484 121 8 221 7 SRX9140457 Unrestricted 42.85 Metagenome 3300038501 *Microbiome Draft Bacterial communities from Montipora foliosa, Hagenbeck Zoo, Hamburg, Germany Coral surface microbial communities from Montipora foliosa, Hagenbeck Zoo, Hamburg, Germany - S1 HPI Heinrich-Pette-Institut 3300038501 Metagenome Analysis Velvet v. 3.3 released by JGI data releasing policy Yes Yes wolfgang.streit@uni-hamburg.de Wolfgang Streit No Host-associated Invertebrates Unclassified Cnidaria Unclassified coral surface 53.596389 9.937778 42166744 48452 32 0 18 0 0.0 Metagenome 3300038399 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site2_nosalt_MIX_0 DOE Joint Genome Institute (JGI) 3300038399 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Salt marsh microbial mat 20.7452 58.6625 258286368 422674 109 6 167 7 SRX9169502 Unrestricted 43.91 Metagenome 3300044274 *Microbiome Permanent Draft Simulated microbial communities of Trichodesmium and heterotrophic bacteria from Gulf of Aqaba, Eilat, Israel Simulated microbial communities of Trichodesmium and heterotrophic bacteria from Gulf of Aqaba, Eilat, Israel - Tfinal-2 DOE Joint Genome Institute (JGI) 3300044274 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes yeala.shaked@mail.huji.ac.il Yeala Shaked No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified simulated 29.501 34.917 357982123 439613 158 15 203 22 Unrestricted 340.37 Metagenome 2170459018 *Microbiome Permanent Draft Switchgrass, maize and mischanthus litter microbial communities from University of Illinois Energy Farm, Urbana, IL Litter degradation MG2 University of Illinois, Urbana-Champaign 2170459018 Metagenome Analysis released per JGI data release policy No Yes lixz@illinois.edu Xiangzhen Li No Engineered Solid waste Composting Grass Unclassified Switchgrass, maize and mischanthus litter 40.1097 -88.2041 115842724 298723 138 15 268 24 0.0 Metagenome 3300000266 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_J_09_P20_500 DOE Joint Genome Institute (JGI) 3300000266 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 49.566667 -138.666667 68022008 164510 92 20 158 35 Unrestricted 0.0 Metagenome 3300001601 *Microbiome Draft Marine microbial communities from chronically polluted sediments in four geographic locations Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site MC sample ARG 03_11.3m v2 (version 2) DOE Joint Genome Institute (JGI) 3300001601 Metagenome Analysis released based on JGI ITS Yes Yes hdionisi@cenpat.edu.ar Hebe Dionisi No Environmental Aquatic Intertidal zone Marine Sediment Marine -54.810872 -68.295525 153670253 444833 256 63 429 78 Unrestricted 0.0 Metagenome 3300001997 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot9-2 3300001997 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 1721583 9939 36 0 80 0 0.0 Metagenome 3300044493 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 120-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044493 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9824 -107.0088 646902698 1754807 595 61 1171 102 Unrestricted 7.77 Metagenome 3300006621 *Microbiome Permanent Draft Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia - TJ07 time point Australian Centre for Ecogenomics 3300006621 Metagenome Analysis CLC released per JGI data release policy No Yes crinke@lbl.gov Christian Rinke No Environmental Aquatic Coastal Marine Unclassified marine surface water -34.1192 151.2267 205594597 260244 45 1 40 2 0.0 Metagenome 3300011258 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, permeate Toyama Prefectural University 3300011258 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Unclassified marine 36.97018 137.37008 7.7 145639161 335473 60 14 62 21 0.0 Metagenome 3300029523 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005388-57 Beijing Genomics Institute (BGI) 3300029523 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 188836334 261017 159 1 247 0 0.0 Metagenome 3300007188 *Microbiome Permanent Draft Cephalotes ants gut microbiomes Ant gut microbial communities from Cephalotes rohweri, Arizona, USA Harvard University 3300007188 Metagenome Analysis IDBA-UD released by Yi Hu Yes Yes pl356@drexel.edu, yihu.bnu@gmail.com Piotr Lukasik, Yi Hu No Host-associated Arthropoda: Insects Gut Digestive system Unclassified ant gut 32.2 -110.9 304900680 479944 48 0 64 0 0.0 Metagenome 3300006297 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160603188 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006297 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 71538075 149949 54 0 108 0 0.0 Metagenome 3300000823 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 28MAY2007 hypolimnion v7 (version 8) DOE Joint Genome Institute (JGI) 3300000823 Metagenome Analysis released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 2903509 2878 0 0 0 0 Unrestricted 0.0 Metagenome 3300022213 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_4_1 DOE Joint Genome Institute (JGI) 3300022213 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Sediment Marine Unclassified sediment 38.05 -121.934 790114515 1754167 717 29 1304 39 SRX4053573 Unrestricted 8.82 Metagenome 3300023047 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E2 DOE Joint Genome Institute (JGI) 3300023047 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Elk feces 38.04 -122.5 97370596 232448 353 12 582 22 SRX4415391 Unrestricted 7.54 Metagenome 3300012581 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100593 University of Pennsylvania 3300012581 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17635666 32497 6 4 15 9 SRX756161 0.0 Metagenome 3300035078 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - T8-0 Autonomous University of Barcelona 3300035078 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 54260101 221555 502 0 1043 0 0.0 Metagenome 3300051372 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - HDCR3C-21 DOE Joint Genome Institute (JGI) 3300051372 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 56841673 103372 87 6 129 10 Unrestricted 130.74 Metagenome 2070309002 *Microbiome Permanent Draft Concrete drainage pipe biofilm microbial communities from Ohio, US Concrete drainage pipe biofilm microbial communities from Ohio, US - sample 12382, Newbler assembly 454 Life Sciences 2070309002 Metagenome Analysis Newbler released per JGI data release policy No Yes matlib.robin@epamail.epa.gov Robin Matlib No Environmental Aquatic Storm water Freshwater Drainage pipe biofilm Concrete drainage pipe biofilm 39.8 -84.3 59718321 144400 54 0 113 0 0.0 Metagenome 3300048527 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_65 DOE Joint Genome Institute (JGI) 3300048527 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9802 -106.9905 26738611 77480 108 0 191 3 Restricted 0.0 Metagenome 3300026774 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01K1-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026774 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 24456696 79834 101 2 166 5 SRX2576116 Unrestricted 0.0 Metagenome 3300014560 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS51_12 University of Hohenheim 3300014560 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 112872405 174867 69 0 140 0 0.0 Metagenome 3300017440 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_03OCT2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017440 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 239225777 481873 230 166 341 312 SRX3927020 Unrestricted 6.47 Metagenome 3300025032 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-18 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025032 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 578450385 1013861 549 19 857 35 SRX3198557 Unrestricted 0.0 Metagenome 3300024903 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 130_HOW14 (SPAdes) DOE Joint Genome Institute (JGI) 3300024903 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 39387450 52253 23 0 32 0 SRX2723971 Unrestricted 0.0 Metagenome 3300001887 *Microbiome Permanent Draft Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils (2) Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils - Sample16 3300001887 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Terrestrial Unclassified Soil Grasslands Grassland soil 23.850674 69.734802 0 0 0 0 0 0 0.0 Metagenome 3300003375 *Microbiome Permanent Draft Lentic enriched actinobacterial communities from dystrophic bog Grosse Fuchskuhle, Brandenburg, Germany Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6 DOE Joint Genome Institute (JGI) 3300003375 Metagenome Analysis Yes Yes sarilog@gmail.com Sarahi Garcia Yes 29848762 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 46.0409 -89.686 171682398 355449 22 0 71 0 SRX3336642 Unrestricted 0.0 Metagenome 3300013249 *Microbiome Permanent Draft Microbial communities associated with sugarcane Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.3_F06 Universidade Estadual de Campinas 3300013249 Metagenome Analysis Spades released by JGI data releasing policy No Yes scs.rafael@gmail.com Rafael Souza No Host-associated Plants Rhizosphere Roots Soil rizhosphere -22.8187222 -47.05896667 6824481 6794 2 0 3 0 0.0 Metagenome 3300014872 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT790_16_10D DOE Joint Genome Institute (JGI) 3300014872 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9225 -106.9514 188554874 433118 283 19 523 31 SRX3780501 Unrestricted 4.71 Metagenome 3300012178 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E6 #832 DOE Joint Genome Institute (JGI) 3300012178 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 319376726 582292 385 15 621 31 SRX3241686 Unrestricted 0.0 Metagenome 3300027805 *Microbiome Permanent Draft Freshwater and sediment microbial communities from a dead zone in Lake Erie, USA Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027805 Metagenome Analysis spades v. 3.11.1 Yes Yes rmmckay@bgsu.edu Robert M. McKay No Environmental Aquatic Lentic Freshwater Sediment Freshwater and sediment 41.474889 -82.854137 917662337 2000747 536 113 948 201 SRX1991078 Unrestricted 0.0 Metagenome 3300024223 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 1D DOE Joint Genome Institute (JGI) 3300024223 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 167813364 472710 218 32 336 76 SRX4457271 Unrestricted 20.66 Metagenome 3300006052 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013 DOE Joint Genome Institute (JGI) 3300006052 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment watersheds 41.170727 -78.4726 4039296061 13036682 2750 252 5181 416 SRX2839558 Unrestricted 0.0 Metagenome 3300026090 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026090 Metagenome Analysis spades v. 3.11.1 released Yes Yes jzz0026@lbl.gov; sgtringe@lbl.gov Jinglie Zhou; Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.049904 -121.765358 137401860 335238 197 0 319 1 SRX7182420 Unrestricted 0.0 Metagenome 3300029104 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 137_M Beijing Genomics Institute (BGI) 3300029104 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 149110706 210311 130 0 231 0 ERX490955 0.0 Metagenome 3300038798 *Microbiome Permanent Draft Human fecal and environmental microbial communities from Peru and El Salvador Reservoir water microbial communities from El Salvador - 0404af Washington University in St. Louis 3300038798 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified Reservoir water 13.5050453 -89.2967661 10862245 15607 10 0 9 0 0.0 Metagenome 3300050333 *Microbiome Permanent Draft American moose and American beaver microbial community from Toronto, Canada American beaver droppings microbial community from Toronto, Canada - BD-C University of Toronto 3300050333 Metagenome Analysis Custom JGI assembly. These are public NCBI metagenomes erroneously loaded as private. Galina Ovchinnikova Yes Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Host-associated Mammals Large intestine Digestive system Fecal American beaver droppings 43.66 -79.4 334890661 443408 176 0 245 0 SRX13466131 0.0 Metagenome 3300039195 *Microbiome Finished Marine algae associated bacterial community from Sydney, Australia Marine algae associated bacterial community from Sydney, Australia - Ulva australis_CR3 Ramaciotti Centre for Genomics 3300039195 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes j.nappi@unsw.edu.au Jadranka Nappi No Host-associated Algae Unclassified Unclassified Unclassified Marine -33.990304 151.231529 438578225 632981 68 18 151 28 0.0 Metagenome 3300070575 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_001-O-20190715-COMP-DNA1 Battelle Memorial Institute 3300070575 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 46.234625 -89.560771 4.58-5.03 25372695 77436 38 8 90 16 0.0 Metagenome 3300013852 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway stone -PAB008 Weill Cornell Medical College 3300013852 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Stone surface city subway stone 40.7 -74.01 17986775 27918 16 0 13 1 SRX823436 0.0 Metagenome 3300047485 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lake Yojoa, Honduras - Yojoa_01_2020_B_hypo (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047485 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Lake Freshwater Unclassified Freshwater 14.8084 -87.9952 946143826 1310248 129 85 253 125 Unrestricted 0.0 Metagenome 3300021566 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - E2014-0066-100-LTR Downsampled Assembly University of Michigan 3300021566 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified freshwater lake 41.704967 -83.256283 7576711 15431 8 7 10 12 0.0 Metagenome 3300003240 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK03-C DOE Joint Genome Institute (JGI) 3300003240 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 288121 973 16 5 31 8 SRX2575245 Unrestricted 0.0 Metagenome 3300020310 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_X000000368 (ERX556067-ERR598950) CEA Genoscope 3300020310 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 35.5571 -6.5586 223876575 561296 281 1 483 1 0.0 Metagenome 3300011572 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00583 Weill Cornell Medical College 3300011572 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.98 24260761 36715 15 0 30 0 SRX822550 0.0 Metagenome 3300051219 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T75.r1 (v3) (version 3) DOE Joint Genome Institute (JGI) 3300051219 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 28461348 58865 61 8 81 8 SRX4550063 Unrestricted 0.0 Metagenome 3300011860 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metalplastic -P01399 Weill Cornell Medical College 3300011860 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface City subway metal/plastic 40.61 -73.98 35635567 70583 33 0 40 0 SRX823339 0.0 Metagenome 3300060653 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_004-M-20210726-comp-1 DOE Joint Genome Institute (JGI) 3300060653 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 40.043059 -105.581501 2543810068 4250979 608 121 1006 159 Unrestricted 17.8 Metagenome 3300003596 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI073_LV_120m_DNA DOE Joint Genome Institute (JGI) 3300003596 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 206167223 432393 263 4 425 9 Unrestricted 0.0 Metagenome 3300049574 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 DOE Joint Genome Institute (JGI) 3300049574 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.40849 -82.168434 1664479336 2649502 623 36 1027 66 Unrestricted 15.58 Metagenome 3300053129 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere DOE Joint Genome Institute (JGI) 3300053129 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.587593 -123.193547 482379967 984101 436 55 827 88 Unrestricted 0.0 Metagenome 3300055478 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Towuti Lake, South Sulawesi, Indonesia - Towuti_190m_2015 DOE Joint Genome Institute (JGI) 3300055478 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.7 121.4 1237461421 2357356 819 4 1326 12 Restricted 14.03 Metagenome 3300045728 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mississippi River, Louisiana, USA - NASQAN2011_236 DOE Joint Genome Institute (JGI) 3300045728 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 30.4456 -91.1915 254003087 709303 419 84 749 130 Unrestricted 0.0 Metagenome 3300029080 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 137_12M Beijing Genomics Institute (BGI) 3300029080 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 69646289 78275 55 0 108 0 ERX490952 0.0 Metagenome 3300001869 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Incubations 11-33A DOE Joint Genome Institute (JGI) 3300001869 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.290884 -156.788063 214654460 393208 217 0 353 2 SRX1990924 0.0 Metagenome 3300019858 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Sao Paulo, Brazil - ZCI4 Center for Advanced Technologies in Genomics, Sao Paulo University 3300019858 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Engineered Solid waste Composting Zoo waste Unclassified compost -23.651072 -46.620675 74725149 149252 92 2 131 2 0.0 Metagenome 3300070396 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_035-O-20180709-COMP-DNA1 3300070396 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 81071606 216991 90 20 148 27 0.0 Metagenome 3300003420 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Midwestern USA - DC3-125 DOE Joint Genome Institute (JGI) 3300003420 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 5264587 15877 21 7 38 21 SRX2770440 Unrestricted 0.0 Metagenome 3300043578 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 050-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043578 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9205 -106.9508 420722990 1078816 534 21 1008 36 Unrestricted 10.0 Metagenome 3300003995 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2 DOE Joint Genome Institute (JGI) 3300003995 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.04565 -121.866287 757498162 2268890 804 3 1703 14 SRX7142153 Unrestricted 0.0 Metagenome 3300026218 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Maryland, USA - DAQMD-001 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026218 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 27681290 48360 15 6 40 15 SRX2770402 Unrestricted 0.0 Metagenome 3300014874 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_2_16_10D DOE Joint Genome Institute (JGI) 3300014874 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9228 -106.9513 222144432 521927 288 24 557 46 SRX3780499 Unrestricted 4.54 Metagenome 3300026772 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A2-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026772 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 26628610 85079 99 4 186 5 SRX1991228 Unrestricted 0.0 Metagenome 3300017900 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Site 227 with 0.8UM filter J. Craig Venter Institute 3300017900 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater -68.4 78.18278 6.94 45468246 112930 70 1 103 0 0.0 Metagenome 3300069583 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, Pacific Southwest, CA, USA - SJER_002-M-20170314-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069583 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.10878 -119.73228 26809773 84710 152 10 318 22 0.0 Metagenome 7000000236 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764487809 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000236 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 40953020 75099 0 0 0 0 0.0 Metagenome 3300027563 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027563 Metagenome Analysis spades v. 3.11.1 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 356233766 746480 182 49 315 81 Unrestricted 0.0 Metagenome 3300025034 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-03 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025034 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 681992070 1223087 659 40 1003 49 SRX3197862 Unrestricted 0.0 Metagenome 3300024443 *Microbiome Permanent Draft Vaginal microbial communities from lab mice Vaginal microbial communities from lab mice with HSV-2 infection, Madrid, Spain - G2-S16 treatment D2, day 1 Polytechnic University of Valencia 3300024443 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Vagina Reproductive system Unclassified mice vagina 40.4191094 -3.6725753 206843 339 0 0 0 0 0.0 Metagenome 3300007229 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA DOE Joint Genome Institute (JGI) 3300007229 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 537844915 1388241 263 23 444 35 SRX2751900, SRX6754010 Unrestricted 0.0 Metagenome 3300029102 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 103_M Beijing Genomics Institute (BGI) 3300029102 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 123392942 168112 103 1 160 2 ERX490927 0.0 Metagenome 3300015178 *Microbiome Permanent Draft Human fecal microbial communities from infant diaper, Dhaka, Bangladesh Human fecal microbial communities from infant diaper, Dhaka, Bangladesh - DMDT001R Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300015178 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes dhtaft@ucdavis.edu Diana Taft No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant feces 23.8103 90.4125 17008766 29209 17 0 26 0 0.0 Metagenome 3300044558 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TS38 DOE Joint Genome Institute (JGI) 3300044558 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.4139 76232036 95547 78 2 84 5 SRX12664702 Unrestricted 243.94 Metagenome 3300013429 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100584 University of Pennsylvania 3300013429 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 139000 446 3 0 8 0 SRX756170 0.0 Metagenome 3300038413 *Microbiome Permanent Draft Acid mine drainage microbial communities from coal mines in Pennsylvania and Ohio, United States Lab enriched acid mine drainage microbial communities from Akron, Ohio, USA - WFPL2_21D DOE Joint Genome Institute (JGI) 3300038413 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shagun2260@gmail.com Shagun sharma No Engineered Wastewater Mine water Industrial wastewater Acid mine drainage acid mine drainage 41.0775 -81.5114 1024560889 2847241 1052 39 1932 73 SRX9404295 Unrestricted 6.37 Metagenome 3300013854 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00847 Weill Cornell Medical College 3300013854 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.71 -74.0 23505350 35670 19 0 31 0 SRX822813 0.0 Metagenome 3300007909 *Microbiome Permanent Draft Anaerobic oil degrading microbial communities from River Tyne estuarine sediment Microbial communities from sediment of the River Tyne Estuary, UK - Pasteurized_686d_2 University of Liverpool 3300007909 Metagenome Analysis IDBA-DB released per JGI data release policy No Yes ana.suarez-suarez@ncl.ac.uk, ian.head@ncl.ac.uk; ana.suarez-suarez@ncl.ac.uk Ana Su?rez-Su?rez, Ian Head; Ana Suarez-Suarez No Environmental Aquatic Unclassified Sediment Unclassified sediment 54.9632021 -1.6348029 134348971 248847 132 0 258 1 0.0 Metagenome 3300006054 *Microbiome Permanent Draft Hot Spring microbial communities from Great Boiling Spring, Nevada Hot spring microbial communities from Great Boiling Spring, Nevada - sample 1 v2 (version 2) DOE Joint Genome Institute (JGI) 3300006054 Metagenome Analysis SPADES v3.6.1 released based on JGI ITS Yes Yes nnivanova@lbl.gov, brian.hedlund@unlv.edu Natasha Ivanova, Brian Hedlund Yes 23555835 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot Spring 40.6614 -119.36622 6.37 131296876 328749 262999 8134 18 0 Unrestricted 0.0 Metagenome 3300026265 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV203 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026265 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 410787910 874189 465 8 717 15 SRX1877465 Unrestricted 0.0 Metagenome 3300055381 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.19C.12 SIP fraction DOE Joint Genome Institute (JGI) 3300055381 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 202872185 371298 154 27 284 42 Unrestricted 13.9 Metagenome 3300049572 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 DOE Joint Genome Institute (JGI) 3300049572 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.40849 -82.168434 1906419437 3139696 705 45 1238 75 Unrestricted 14.81 Metagenome 3300056645 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.20W.9 SIP fraction DOE Joint Genome Institute (JGI) 3300056645 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 96834492 184963 36 8 64 13 Unrestricted 15.89 Metagenome 3300043097 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver small intestine microbial communities from Maple Ridge, British Columbia, Canada - Beaver6Small.Intestine1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043097 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Small intestine Digestive system Unclassified small intestine 49.18 -122.54 345533745 552824 4 5 16 6 SRX8346483 Unrestricted 12.96 Metagenome 3300049860 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Kansas, USA - mcdi_2019_sed_WHONDRS-S19S_0017 DOE Joint Genome Institute (JGI) 3300049860 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 38.94668 -96.44355 422234161 1033215 715 1 1405 6 Restricted 0.0 Metagenome 3300011574 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00435 Weill Cornell Medical College 3300011574 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -73.83 24589697 36888 9 0 21 0 SRX822404 0.0 Metagenome 3300042728 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - G_a8.2 Re-assembly Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042728 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1237 -89.1404 53998234 54813 4 3 7 1 SRX5234789 0.0 Metagenome 3300021965 *Microbiome Permanent Draft Metagenomes from anaerobic digester of solid waste Food waste and fibre mixture microbial community, University of Toronto, Ontario, Canada - LBfeed1 spades University of Toronto 3300021965 Metagenome Analysis SPAdes-3.10.1 Yes Yes elizabeth.edwards@utoronto.ca; camillaln@gmail.com Elizabeth A. Edwards; Camilla Nesb? No Engineered Solid waste Unclassified Household waste Unclassified food waste 43.6629 -79.3957 1811595723 3608756 316 81 532 201 SRX4965139, SRX4986166 0.0 Metagenome 3300012953 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome DOE Joint Genome Institute (JGI) 3300012953 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified seawater 34.876 -13.1352 3480224628 7021553 1243 1486 1805 2313 SRX3565149 Unrestricted 0.0 Metagenome 3300046664 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere DOE Joint Genome Institute (JGI) 3300046664 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5883 -123.1939 531569078 933134 268 13 445 21 Unrestricted 17.21 Metagenome 3300070731 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Moab, Utah, USA - MOAB_006-M-20160728-COMP-DNA1 3300070731 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 1466526 4905 12 0 43 0 0.0 Metagenome 3300070976 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lajas Experimental Station, Puerto Rico, USA - LAJA_044-M-20171128-COMP-DNA1 3300070976 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 2203889 7513 11 0 18 0 0.0 Metagenome 3300023108 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaG (version 2) DOE Joint Genome Institute (JGI) 3300023108 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1083026884 2156287 454 51 698 94 SRX4071580 Unrestricted 23.77 Metagenome 3300007735 *Microbiome Finished Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - 2014Oct Chunlab, Inc 3300007735 Metagenome Analysis SPades version 3.1.1 released per JGI data release policy No Yes chojc@inha.edu, chojc@inha.edu; krmoon518@gmail.com Jang Cheon Cho, Jang Cheon Cho; Kira Moon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 37.953056 127.81721 23735463 35147 0 0 0 0 0.0 Metagenome 3300047157 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_PBmetag_110112.NPB DOE Joint Genome Institute (JGI) 3300047157 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 379816229 417888 180 6 167 6 Unrestricted 0.0 Metagenome 2013338001 *Microbiome Permanent Draft Macropus eugenii forestomach microbial communities from Canberra, Australia Macropus eugenii forestomach microbial communities from Canberra, Australia - Macropus_eugenii_May07 DOE Joint Genome Institute (JGI) 2013338001 Metagenome Analysis lucy / pga released per Simon -- IMGSUPP2949 No Yes mark.morrison@csiro.au Mark Morrison Yes 20668243 Host-associated Mammals Stomach Digestive system Forestomach Macropus eugenii forestomach -35.310643 149.124184 31138872 46805 77 0 113 0 0.0 Metagenome 3300027011 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 29 (SPAdes) DOE Joint Genome Institute (JGI) 3300027011 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 99345800 226343 105 0 186 1 SRX4340707 Unrestricted 0.0 Metagenome 3300038979 *Microbiome Permanent Draft Acid mine drainage microbial biofilm communities from Richmond Mine, California, USA Acid mine drainage biofilm communities from Richmond mine site Abmuck, Iron Mt, CA, USA - AMDABmuck0807 University of California, Berkeley 3300038979 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 40.67542 -122.53025 9564249 12583 9 2 12 2 0.0 Metagenome 3300043252 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_11 (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043252 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 586844127 976639 126 4 250 5 SRX9140449 Unrestricted 53.08 Metagenome 3300044765 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R DOE Joint Genome Institute (JGI) 3300044765 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 14.75 -16.85 966685852 1646286 474 58 712 90 Unrestricted 18.13 Metagenome 3300035679 *Microbiome Permanent Draft Lab enriched peat soil microbial communities from two peatlands near Ithaca, NY, United States Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF13MY DOE Joint Genome Institute (JGI) 3300035679 Metagenome Analysis spades v. 3.13.0 Yes Yes rer26@cornell.edu Ruth Richardson No Environmental Terrestrial Wetlands Soil Peat peat soil 42.3286 -76.4792 1859524837 4634418 1494 3 2665 4 SRX8167751 Unrestricted 0.0 Metagenome 3300001377 *Microbiome Permanent Draft Goat rumen microbial communities from Langston University, Oklahoma, USA Goat rumen fungal communities from Langston, Oklahoma, USA - Assemble1 Cornell University 3300001377 Metagenome Analysis released per Rekha No Yes zsuping@tnstate.edu Suping Zhou No Host-associated Mammals Stomach Digestive system Rumen Goat rumen 35.453976 -97.515884 83468785 230278 405 27 861 41 0.0 Metagenome 3300003885 *Microbiome Permanent Draft Black smoker hydrothermal vent sediment microbial communities from the Guaymas Basin, Mid-Atlantic Ridge, South Atlantic Ocean Black smoker hydrothermal vent sediment microbial communities from the Guaymas Basin, Mid-Atlantic Ridge, South Atlantic Ocean - Sample 1 Beijing Genomics Institute (BGI) 3300003885 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes limeng848@gmail.com Guaymas sediment, MENG LI No Environmental Aquatic Hydrothermal vents Marine Black smokers hydrothermal vents -15.160005 -13.350021 1415392384 2622442 935 25 1659 47 0.0 Metagenome 3300065598 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 793 in Claresholm, Alberta, Canada - S00JY_0189 Microbiome Insights 3300065598 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 50.0026073 -113.3303972 90640525 134385 51 0 100 0 0.0 Metagenome 3300044718 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_28BS DOE Joint Genome Institute (JGI) 3300044718 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4324 -106.0309 844431130 1388035 307 46 484 64 SRX20650050 Unrestricted 15.11 Metagenome 3300044272 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T88 S DOE Joint Genome Institute (JGI) 3300044272 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7692 -64.3744 285356906 658104 11 0 22 0 Unrestricted 29.04 Metagenome 3300060361 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210529_02_09 DOE Joint Genome Institute (JGI) 3300060361 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 1087209426 1525574 187 144 257 187 Unrestricted 21.93 Metagenome 3300042329 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME28May2013-rr0753 DOE Joint Genome Institute (JGI) 3300042329 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 449277336 682006 129 21 166 22 Unrestricted 24.09 Metagenome 7000000027 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2 of subject 764143897 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000027 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 94084830 156739 0 0 0 0 0.0 Metagenome 3300041451 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG AgResearch, New Zealand, Mosgeil 3300041451 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Rhizoplane Roots Dairy farm pasture -43.648506 172.343549 1113899790 2463315 249 82 767 176 0.0 Metagenome 3300051374 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - ATCR1D-21 DOE Joint Genome Institute (JGI) 3300051374 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 441805368 694032 370 27 562 32 Unrestricted 48.91 Metagenome 2070309004 *Microbiome Permanent Draft Green-waste compost microbial community at University of California, Davis, USA, from solid state bioreactor Green-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto Rico DOE Joint Genome Institute (JGI) 2070309004 Metagenome Analysis No Yes phugenholtz@lbl.gov Phil Hugenholtz Yes 20098679 Environmental Terrestrial Unclassified Soil Tropical rainforest Green-waste compost 18.311389 -65.8375 281407472 781631 52 0 180 0 0.0 Metagenome 3300025213 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP0960 (SPAdes) DOE Joint Genome Institute (JGI) 3300025213 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -27.98 63.25 96499077 175736 97 5 145 6 SRX1982655 Unrestricted 0.0 Metagenome 3300019703 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BRC_7-8_MG DOE Joint Genome Institute (JGI) 3300019703 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 97724418 247887 236 22 446 45 SRX3983590 Unrestricted 3.66 Metagenome 3300070857 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Treehaven, Wisconsin, USA - TREE_041-M-20200708-COMP-DNA1 3300070857 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 24289079 76328 120 10 188 17 0.0 Metagenome 3300028030 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in the Atlantic and Pacific Ocean Hydrothermal vent microbial communities from Lau Basin, Pacific Ocean - 132-544 DOE Joint Genome Institute (JGI) 3300028030 Metagenome Analysis spades v. 3.11.1 Yes Yes pgirguis@oeb.harvard.edu Peter Girguis No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent -21.9896 -176.568 640257898 1272930 786 9 1183 15 SRX5246454 Unrestricted 29.36 Metagenome 3300048022 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_191002.NP1 DOE Joint Genome Institute (JGI) 3300048022 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 754575650 1656593 464 85 803 155 Unrestricted 11.14 Metagenome 3300026979 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 13 (SPAdes) DOE Joint Genome Institute (JGI) 3300026979 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 81920775 197536 78 0 167 1 SRX4338614 Unrestricted 0.0 Metagenome 3300033520 *Microbiome Permanent Draft Sinkhole microbial mat communities from Lake Huron, Michigan, USA Sinkhole microbial mat communities from Lake Huron, Michigan, USA - SG0425 University of Michigan 3300033520 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy Yes Yes sgrim01@gmail.com Sharon Grim No Environmental Aquatic Sinkhole Freshwater Unclassified microbial mat 45.19843 -83.32721 312935809 416449 179 4 222 4 0.0 Metagenome 3300031613 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #1056 DOE Joint Genome Institute (JGI) 3300031613 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.457 78.1911 460100254 754195 174 64 195 96 SRX5649547 Unrestricted 40.32 Metagenome 3300014491 *Microbiome Permanent Draft Permafrost microbial communities from Stordalen Mire, Sweden Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG DOE Joint Genome Institute (JGI) 3300014491 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rich.270@osu.edu Virginia Rich Yes 30013118 Environmental Terrestrial Wetlands Soil Permafrost Bog 68.35 19.05 1208590358 2108554 564 33 945 58 SRX3581027 Unrestricted 11.82 Metagenome 3300034009 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 40SMS DOE Joint Genome Institute (JGI) 3300034009 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Sub-biocrust Soil Unclassified sub-biocrust soil 34.7856 -115.66 241891197 541618 334 13 646 13 SRX7621469 Unrestricted 9.92 Metagenome 3300056714 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.5C.7 SIP fraction DOE Joint Genome Institute (JGI) 3300056714 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 77389610 154948 71 0 89 0 Unrestricted 9.65 Metagenome 3300046748 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_170920.NP2 DOE Joint Genome Institute (JGI) 3300046748 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 604586350 1289374 415 82 689 151 Unrestricted 10.67 Metagenome 3300040531 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Barrow Environmental Observatory, Tundra, AK, USA - BARR_054-O-20170807-COMP-DNA1 Battelle Memorial Institute 3300040531 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 71.28241 -156.61936 3082014 8808 22 3 33 2 0.0 Metagenome 3300008513 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 160319967 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008513 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 115794576 136350 95 0 121 0 0.0 Metagenome 7000000524 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human throat microbial communities from NIH, USA - visit 2, subject 763496533 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000524 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human 39.0042816 -77.1012173 83711704 151035 0 0 0 0 SRX024939 0.0 Metagenome 3300004276 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_165m DOE Joint Genome Institute (JGI) 3300004276 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 684756279 1613373 556 46 1043 72 Unrestricted 0.0 Metagenome 3300029548 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P092V1 Beijing Genomics Institute (BGI) 3300029548 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 167728534 202314 126 0 165 0 0.0 Metagenome 3300032094 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25 DOE Joint Genome Institute (JGI) 3300032094 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1265616678 3032800 488 9 798 13 SRX5820071 Unrestricted 12.33 Metagenome 3300025418 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Oct08 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025418 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 173452157 338849 65 36 98 51 SRX2565220 Unrestricted 0.0 Metagenome 3300071122 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from KU Field Station, Kansas, USA - UKFS_031-M-20180813-COMP-DNA1 3300071122 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 6950335 22411 51 1 99 4 0.0 Metagenome 3300040264 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_044-O-20160815-COMP-DNA1 Battelle Memorial Institute 3300040264 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 7791391 23049 29 5 60 8 0.0 Metagenome 3300035092 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_11 DOE Joint Genome Institute (JGI) 3300035092 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 39.6589 -79.9058 726536190 2021111 855 69 1462 116 SRX8289635 Unrestricted 6.53 Metagenome 3300011701 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00721 Weill Cornell Medical College 3300011701 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.71 -74.0 38488719 47596 17 0 34 0 SRX822688 0.0 Metagenome 3300021279 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen10, Rep 1, Penicillin and Streptomycin DOE Joint Genome Institute (JGI) 3300021279 Metagenome Analysis spades v. 3.11.1-check Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4149 -119.841 80893262 107450 28 6 27 18 SRX4038386 Unrestricted 173.79 Metagenome 3300028457 *Microbiome Permanent Draft Endolithic Cyanobacteria Culture Enrichments Cultured Ingnimbrite endolithic microbial community from Monturaqui, Atacama Desert, Chile - I-MTQ-4 Johns Hopkins Bayview Research CORES 3300028457 Metagenome Analysis metaSPAdes v. 3.10, metawrap v. 0.5 released by JGI data releasing policy No Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Ignimbrite -23.6908 -70.407 6549241 6336 1 0 1 0 0.0 Metagenome 3300042583 *Microbiome Draft Microbial community shotgun study from Camalti Saltern, Izmir, Turkey Brine water microbial communities from a salt crystallizer pond in Camalti Saltern, Izmir, Turkey - 4KA spades_assembly Macrogen Inc 3300042583 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy No Yes albayrakece@gmail.com ece albayrak No Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Unclassified brine water 38.49 26.92 918516285 2116797 234 14 586 19 0.0 Metagenome 3300022793 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S4 Version 2 University of New South Wales 3300022793 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 35809329 63335 16 7 14 12 0.0 Metagenome 3300061178 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Santa Rita Experimental Range, Tucson, Arizona, USA - SRER_052-M-20210810-comp-1 DOE Joint Genome Institute (JGI) 3300061178 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Desert Soil Unclassified Terrestrial soil 31.909531 -110.833359 2196757439 3845659 855 9 1499 16 Unrestricted 16.48 Metagenome 3300029135 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012085-89 Beijing Genomics Institute (BGI) 3300029135 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 188420975 217307 121 0 189 0 0.0 Metagenome 3300032770 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5 DOE Joint Genome Institute (JGI) 3300032770 Metagenome Analysis spades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified soil 26.5052 -80.2345 4932582316 9940914 1968 65 3312 125 SRX5667567 Unrestricted 10.7 Metagenome 3300028738 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N2_1 DOE Joint Genome Institute (JGI) 3300028738 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 612919482 1164549 449 64 629 120 SRX5357455 Unrestricted 0.0 Metagenome 3300050245 *Microbiome Permanent Draft Freshwater microbial communities from Yellowstone Lake, Wyoming, United States Freshwater microbial communities from Yellowstone Lake, Wyoming, United States - 2017-07-24-11.5m DOE Joint Genome Institute (JGI) 3300050245 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.412 -110.335 809980652 1209283 264 36 339 50 Restricted 26.91 Metagenome 3300027834 *Microbiome Permanent Draft Marine microbial communities from the Santa Barbara Channel oil seeps Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Santa Barbara Oil Seep Sample 6 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027834 Metagenome Analysis spades v. 3.11.1 Yes Yes mhess@ucdavis.edu Matthias Hess Yes 25197496 Environmental Aquatic Oil seeps Marine Unclassified Marine 34.39225 -119.845662 1151072842 2155500 777 37 1159 55 SRX2554728 Unrestricted 0.0 Metagenome 3300000848 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from University of Liverpool Illum_XT1_IDBAUD University of Liverpool 3300000848 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 9723283 26332 72 0 110 0 0.0 Metagenome 3300049453 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 soil DOE Joint Genome Institute (JGI) 3300049453 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.587826 -123.193839 6.77 234800859 440259 191 13 411 26 Unrestricted 24.09 Metagenome 3300025465 *Microbiome Permanent Draft Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico and Hudson Canyon, USA Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN8C Hudson Canyon (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025465 Metagenome Analysis spades v. 3.11.1 Yes Yes mcredmond@uncc.edu Molly C. Redmond No Environmental Aquatic Cold seeps Marine Unclassified Methane seep mesocosm 39.29 -72.2 257123956 426696 192 1 262 0 SRX2754392 Unrestricted 0.0 Metagenome 3300069329 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Atlantic Neotropical, PR, USA - GUAN_004-M-20160927-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069329 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 17.96955 -66.8687 160324381 448900 180 5 381 4 0.0 Metagenome 3300037789 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - ARW7_20151203 DOE Joint Genome Institute (JGI) 3300037789 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 112423020 212208 87 18 134 24 SRX9140353 Unrestricted 77.88 Metagenome 3300012192 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00890 Weill Cornell Medical College 3300012192 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.9 23278718 27728 14 0 23 0 SRX822853 0.0 Metagenome 3300008941 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T8 (1) BES Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2) Shell Corporation 3300008941 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 124106565 424317 174 0 313 1 0.0 Metagenome 3300038772 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog73 BILS 3300038772 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 8226109 21395 18 2 19 2 ERX1594895 0.0 Metagenome 3300015194 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb1c, glacier snout) University of Bristol 3300015194 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.907119 18.447522 7.2 249845086 499940 219 17 358 33 0.0 Metagenome 3300022159 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v3) (version 3) DOE Joint Genome Institute (JGI) 3300022159 Metagenome Analysis spades v. 3.11.1-check Yes Yes chenf@umces.edu; bcampb7@clemson.edu Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.149325 -75.288339 68128502 200386 8 0 15 0 SRX3785816, SRX3785815, SRX2745104 Unrestricted 0.0 Metagenome 3300046349 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_132 DOE Joint Genome Institute (JGI) 3300046349 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9703 -106.997 291519627 730992 909 207 1790 253 Restricted 0.0 Metagenome 3300014898 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from two oxygen tension regimens in Lake Washington, USA Freshwater lake sediment microbial communities from low oxygen tension regimen in Lake Washington, USA - LO rep. 1 week 11 - L1_11_WGA University of Washington 3300014898 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 47.631156 -122.254601 16960693 29396 11 0 13 0 0.0 Metagenome 7000000311 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human attached/keratinized gingiva microbial communities from NIH, USA - visit 1, subject 763961826 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000311 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Attached/Keratinized gingiva Human 39.0042816 -77.1012173 10354520 17255 0 0 0 0 0.0 Metagenome 3300043594 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 116-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043594 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9885 -107.0055 589102409 1410993 389 22 737 21 Unrestricted 8.08 Metagenome 3300024248 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 48D_r DOE Joint Genome Institute (JGI) 3300024248 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 264799548 606764 203 55 315 92 SRX4474413 Unrestricted 16.31 Metagenome 3300009576 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day23 DOE Joint Genome Institute (JGI) 3300009576 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 39.849 -81.036 13117313 26329 36 0 56 0 SRX2996505 Unrestricted 0.0 Metagenome 2199352010 *Microbiome Permanent Draft Wastewater treatment microbial communities from EBPR bioreactor at Univ of Illinois, Urbana Champaign, that are accumulating glycogen and are tetrad forming Tetrad forming microbial communities from wastewater bioreactor at Univ of Illinois, Urbana Champaign: Sample 888 University of Illinois, Urbana-Champaign 2199352010 Metagenome Analysis Newbler Released per request from Masaru Nobu- Feb 23, 2014 No Yes t.hideyuki@gmail.com Hideyuki Tamaki No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Wastewater treatment 39.0042816 -77.1012173 29528629 43771 0 0 0 0 0.0 Metagenome 3300008061 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159571453 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008061 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 41713671 78999 38 0 71 0 0.0 Metagenome 3300061581 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_RHK2_1_to_SEK_2 DOE Joint Genome Institute (JGI) 3300061581 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.245 881333375 1484532 473 198 725 293 Unrestricted 0.0 Metagenome 3300028339 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF 2006 #2 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028339 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5627 78.1882 48405177 76522 19 1 27 1 SRX3242175 Unrestricted 0.0 Metagenome 3300045951 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Kowloon Bay, Hong Kong - P4PP DOE Joint Genome Institute (JGI) 3300045951 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Unclassified Marine Unclassified Seawater 22.3 114.2 1249837673 1477788 17 14 25 35 Restricted 13.34 Metagenome 3300000579 *Microbiome Draft Forest soil microbial communities from Amazon Forest, Brazil Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01 DOE Joint Genome Institute (JGI) 3300000579 Metagenome Analysis released based on JGI ITS Yes Yes jorge@uta.edu, jmrodrigues@ucdavis.edu Jorge Rodrigues, Jorge L. Rodrigues Yes 30083144 Environmental Terrestrial Tropical forest Soil Bulk soil Forest soil -10.171667 -62.7875 198863308 572460 585 36 961 55 Unrestricted 0.0 Metagenome 7000000103 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 1, subject 160603188 replicate 2 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000103 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 24897481 34396 0 0 0 0 SRX024535, SRX024536 0.0 Metagenome 3300033175 *Microbiome Permanent Draft Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_31_08-R1 DOE Joint Genome Institute (JGI) 3300033175 Metagenome Analysis spades v. 3.13.0 Yes Yes ziels@mail.ubc.ca Ryan Ziels Yes 35477253 Engineered Bioreactor Unclassified Anaerobic Unclassified sludge 51.9691 5.6654 536854289 834009 482 0 624 0 SRX7542611 Unrestricted 42.59 Metagenome 3300011598 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00227 Weill Cornell Medical College 3300011598 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway 40.88 -73.89 17945063 38934 27 0 42 0 SRX822206 0.0 Metagenome 3300025811 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/8/14 3 um filter (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025811 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 377551349 700496 383 8 583 19 SRX2770548 Unrestricted 0.0 Metagenome 3300027327 *Microbiome Permanent Draft Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran, Adriatic Sea Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge mesohyl, lysed by freeze-thaw cycling (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027327 Metagenome Analysis spades v. 3.11.1 Yes Yes ute.hentschel@uni-wuerzburg.de Ute Hentschel No Host-associated Porifera Unclassified Sponge Unclassified Host-associated 45.5099 13.56 328133411 479633 127 10 164 10 SRX4919574 Unrestricted 0.0 Metagenome 3300055492 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.1W.11 SIP fraction DOE Joint Genome Institute (JGI) 3300055492 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 194090389 319459 217 38 347 59 Unrestricted 26.34 Metagenome 3300034155 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_17 DOE Joint Genome Institute (JGI) 3300034155 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9142 -147.8349 454665171 1179459 619 7 1123 14 SRX7633857 Unrestricted 6.01 Metagenome 3300025537 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1 (SPAdes) DOE Joint Genome Institute (JGI) 3300025537 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.05241603 -121.76907401 152724635 324217 195 0 372 2 SRX7142751 Unrestricted 0.0 Metagenome 3300052273 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Colorado, USA - BV_L2_S2 DOE Joint Genome Institute (JGI) 3300052273 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 40.99156 -106.60468 254311933 469250 340 53 727 57 Unrestricted 27.95 Metagenome 3300045743 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Microbial mat bacterial communities from riparian zone, North Slope, Alaska, United States - OKS_BSeep2B_28June2019 DOE Joint Genome Institute (JGI) 3300045743 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes demerson@bigelow.org David Emerson No Environmental Terrestrial Unclassified Soil Riparian soil riparian zone microbial mat 68.6721 -149.1359 636342736 1078738 596 312 929 397 Unrestricted 22.5 Metagenome 3300070937 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_043-M-20191002-COMP-DNA1 3300070937 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 14198890 43828 41 3 81 3 0.0 Metagenome 3300005102 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_1/10/2011_ DNA DOE Joint Genome Institute (JGI) 3300005102 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 279740073 488504 315 7 432 13 SRX2518134 Unrestricted 0.0 Metagenome 3300040154 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_021-M-6-21-20130731-GEN-DNA1 Argonne National Laboratory 3300040154 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 9250312 27649 30 13 61 23 0.0 Metagenome 3300012067 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Georgia, USA - TSGA061 MetaG DOE Joint Genome Institute (JGI) 3300012067 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 33.0839 -81.7699 100679114 174861 104 152 142 312 SRX3539658 Unrestricted 0.0 Metagenome 3300002104 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.2 DOE Joint Genome Institute (JGI) 3300002104 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.53 -107.78 604335938 1469426 1098 8 2002 25 SRX1991821 Unrestricted 0.0 Metagenome 3300069270 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Santa Rita Experimental Range, Tucson, Arizona, USA - SRER_043-M-20210809-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069270 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Desert Soil Unclassified Terrestrial soil 31.910099 -110.837175 2792952645 6561823 2014 29 3832 46 0.0 Metagenome 3300013630 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01029 Weill Cornell Medical College 3300013630 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.68 -73.83 10411881 14219 6 2 16 0 SRX822991 0.0 Metagenome 3300048010 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_191009.NP1 DOE Joint Genome Institute (JGI) 3300048010 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 938719033 2060212 586 114 921 179 Unrestricted 13.53 Metagenome 3300033512 *Microbiome Permanent Draft Sinkhole microbial mat communities from Lake Huron, Michigan, USA Sinkhole microbial mat communities from Lake Huron, Michigan, USA - SG0414 University of Michigan 3300033512 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy Yes Yes sgrim01@gmail.com Sharon Grim No Environmental Aquatic Sinkhole Freshwater Unclassified microbial mat 45.19843 -83.32721 312779191 380156 112 14 137 12 0.0 Metagenome 3300015688 *Microbiome Permanent Draft Microbial communities associated with sugarcane Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Universidade Estadual de Campinas 3300015688 Metagenome Analysis SPADES released by JGI data releasing policy No Yes scs.rafael@gmail.com Rafael Souza No Host-associated Plants Rhizosphere Roots Unclassified rizhosphere -22.8187222 -47.05896667 10124206 9712 11 0 12 0 0.0 Metagenome 3300045233 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_5_E DOE Joint Genome Institute (JGI) 3300045233 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 218371861 257105 128 1 130 1 Unrestricted 111.95 Metagenome 3300003166 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Midwestern USA - DC3-104 DOE Joint Genome Institute (JGI) 3300003166 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 16101289 34260 26 12 34 14 SRX2770435 Unrestricted 0.0 Metagenome 3300012316 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100115 University of Pennsylvania 3300012316 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14446361 30507 13 1 25 0 SRX756715 0.0 Metagenome 3300012947 *Microbiome Permanent Draft Guam Dysideidae Sponge Holobiont Metagenomes Dysideidae sponge tissue microbial communities from Piti Bomb Holes, Guam, USA - SP4 SP4_idba_062515e University of California, San Diego, Scripps Institute of Oceanography 3300012947 Metagenome Analysis IDBA-UD v 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton Yes 28319100, 32576248 Host-associated Porifera Unclassified Sponge Unclassified sponge tissue 13.345738 144.638186 111335937 128057 32 1 42 1 SRX2617293, SRX1837357 0.0 Metagenome 3300003639 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 m-RNA DAY 64 University of Sao Paulo, Virginia Bioinformatics Institute 3300003639 Metagenome Analysis SoapDeNovo released per JGI data release policy No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 28678193 68407 18 43 48 133 0.0 Metagenome 3300009034 *Microbiome Permanent Draft Subsurface anoxic archaea in intertidal mud flat sediment Intertidal mud flat sediment archaeal communities from Garolim Bay, Chungcheongnam-do, Korea Macrogen 3300009034 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes mnter89@gmail.com Joo-Han, Gwak, Gwak Joo-Han No Environmental Aquatic Intertidal zone Marine Sediment sediment, intertidal 36.88 126.38 2047355608 2746451 746 9 789 9 0.0 Metagenome 3300069345 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_003-M-20130627-COMP-DNA1 re-annotation Argonne National Laboratory 3300069345 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 21348143 64387 61 6 121 5 ERX2133974 0.0 Metagenome 3300004199 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 33_HOW6 DOE Joint Genome Institute (JGI) 3300004199 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 75304138 180605 48 2 107 3 SRX2720410 Unrestricted 0.0 Metagenome 3300039359 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 590_B Beijing Genomics Institute (BGI) 3300039359 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 47291151 56793 34 0 32 0 ERX491249 0.0 Metagenome 3300010991 *Microbiome Permanent Draft CWC Coastal Marshes ELM10016_Aassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method A (2X250bp) Molecular Research LP (MR DNA) 3300010991 Metagenome Analysis SPAdes 3.9.0 released by JGI data releasing policy No Yes aengel1@utk.edu Annette Engel No Environmental Aquatic Wetlands Freshwater Sediment sediment 29.45497 -89.758933 15184819 28255 26 1 27 2 0.0 Metagenome 3300032228 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains Ecozone, Canada - Lake 08-097 Genome Quebec 3300032228 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.751029 -71.390073 237316921 552298 50 15 86 29 0.0 Metagenome 3300002080 *Microbiome Permanent Draft Saline desert soil microbial communities from Kutch, Gujarat, India Saline desert soil microbial communities from Kutch, Gujarat, India - S1 3300002080 Metagenome Analysis Released per request from Aanal Pandit - March 31 2014 No Yes ggi_gsbtm@yahoo.com Snehal Bagatharia No Environmental Terrestrial Unclassified Soil Desert Saline desert soil 23.8109 70.9831 0 0 0 0 0 0 0.0 Metagenome 3300008276 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763860675 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008276 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 118142399 212085 132 0 188 0 0.0 Metagenome 3300056806 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.18W.9 SIP fraction DOE Joint Genome Institute (JGI) 3300056806 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 76114667 148744 98 10 162 17 Unrestricted 10.94 Metagenome 3300001813 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_5A DOE Joint Genome Institute (JGI) 3300001813 Metagenome Analysis Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 105380265 169880 92 0 149 1 SRX3321862 Unrestricted 0.0 Metagenome 3300071110 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_003-O-20170726-COMP-DNA1 3300071110 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 21099934 67045 97 4 191 6 0.0 Metagenome 3300035448 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_1_33_6 mgh University of Alberta 3300035448 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 43252495 54612 27 0 34 0 0.0 Metagenome 3300012089 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ008 MetaG DOE Joint Genome Institute (JGI) 3300012089 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.7086 -74.664 267970640 531422 252 19 390 44 SRX3539436 Unrestricted 0.0 Metagenome 7000000277 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159490532 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000277 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 13074753 30569 0 0 0 0 0.0 Metagenome 3300010149 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG DOE Joint Genome Institute (JGI) 3300010149 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.509 -76.198 458910988 1107247 5 0 10 0 SRX3197246, SRX3197247 Unrestricted 0.0 Metagenome 3300004941 *Microbiome Permanent Draft Marine and wastewater microbial communities from Korea, with extracellular vesicles Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-0.2um Chunlab, Inc 3300004941 Metagenome Analysis IDBA-1.1.1 released per JGI data release policy No Yes s-jkim@kiost.ac Sang-Jin Kim No Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Marine water 36.03776 129.386 88385845 206506 215 57 354 104 0.0 Metagenome 3300041938 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Effluent pond microbial community from a dairy farm Lincoln, Canterbury, New Zealand - EFF18_2 MetaG AgResearch, New Zealand, Mosgeil 3300041938 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Engineered Wastewater Agricultural wastewater Industrial wastewater Unclassified Effluent pond -43.648506 172.343549 421900462 469878 28 9 72 38 0.0 Metagenome 3300036443 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Gloeocapsa sp. UFS-A4-WI-NPMV-4B04 and co-occurring heterotrophs from desert soil from Utah, United States - 20190125_19 DOE Joint Genome Institute (JGI) 3300036443 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Desert Soil Unclassified Desert soil 40.23 -112.4652 67964822 78717 29 0 19 0 SRX8847456 Unrestricted 127.41 Metagenome 3300032335 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 17-113 Genome Quebec 3300032335 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.738907 -72.145011 365436476 773033 249 67 401 203 0.0 Metagenome 3300003773 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 DOE Joint Genome Institute (JGI) 3300003773 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 134921944 229174 121 0 169 0 SRX2770680 Unrestricted 0.0 Metagenome 3300012833 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - DID2933_E24_Lignin MG DOE Joint Genome Institute (JGI) 3300012833 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 92910293 128456 148 0 211 0 SRX3564785 Unrestricted 0.0 Metagenome 3300004061 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqC_D2 DOE Joint Genome Institute (JGI) 3300004061 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.209766 -122.033424 405418658 1348631 677 10 1589 21 SRX7142970 Unrestricted 0.0 Metagenome 3300070843 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_042-M-20170719-COMP-DNA1 3300070843 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 97903404 280395 111 6 251 6 0.0 Metagenome 3300008082 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 158337416 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008082 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 116107478 198845 92 0 126 0 0.0 Metagenome 3300028248 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_05JUN2017_LD1 DOE Joint Genome Institute (JGI) 3300028248 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 86528748 161272 4 33 8 77 SRX5345792 Unrestricted 19.9 Metagenome 3300000140 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2009 P26 500m DOE Joint Genome Institute (JGI) 3300000140 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 50.0 -145.0 82331910 176245 70 48 160 69 Unrestricted 0.0 Metagenome 3300035189 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_08D_16 DOE Joint Genome Institute (JGI) 3300035189 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9123 -147.839 879396250 1935936 445 32 817 46 SRX7710678 Unrestricted 7.47 Metagenome 3300060898 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Guanica State Forest and Biosphere Reserve, Puerto Rico - GUAN_048-M-20210920-comp-1 DOE Joint Genome Institute (JGI) 3300060898 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tropical forest Soil Unclassified Terrestrial soil 17.96911 -66.864276 2373798091 4143520 651 31 1219 31 Unrestricted 19.8 Metagenome 3300007079 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 809635352 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007079 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 95569843 140769 70 0 101 0 0.0 Metagenome 3300004753 *Microbiome Permanent Draft Metagenomics analysis of sediments collected from Formosa Ridge Marine cold seep sediment microbial communities from Formosa Ridge, South China Sea - G1-1 Beijing Genomics Institute (BGI) 3300004753 Metagenome Analysis SOAPdenovo (version 1.05) released per JGI data release policy No Yes mclai01@gmail.com Mei-Chin Lai No Environmental Aquatic Cold seeps Marine Sediment Marine cold seep sediment 22.11546667 119.28443333 2744723 6644 7 0 10 0 0.0 Metagenome 3300026300 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026300 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.73825 -123.6301 499742644 975565 576 18 890 49 SRX2562219 Unrestricted 0.0 Metagenome 3300001336 *Microbiome Permanent Draft Benthic lake microbial communities from British Columbia, Canada, for chemocline samples ML7 Pennsylvania State University 3300001336 Metagenome Analysis IDBA released per PI No Yes tlh42@psu.edu Trinity No Environmental Aquatic Lake Freshwater Microbial mats Benthic lake 49.283333 -119.583333 640109814 993526 354 4 655 11 0.0 Metagenome 3300045014 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - CSC3D_TR DOE Joint Genome Institute (JGI) 3300045014 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 1222467713 2160229 564 25 911 47 Unrestricted 16.36 Metagenome 3300031760 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Bovine rumen microbial communities from UC Davis, California, United States - 2_2465_0518 DOE Joint Genome Institute (JGI) 3300031760 Metagenome Analysis spades v. 3.12.0 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen 38.5357 -121.7593 3073909412 6626189 4022 46 6133 60 SRX5813658 Unrestricted 13.86 Metagenome 3300035167 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 12_7.5_N_13_3 DOE Joint Genome Institute (JGI) 3300035167 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1863 -2.2145 1295017013 3132455 329 0 504 0 SRX8234223 Unrestricted 7.79 Metagenome 3300021320 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 DOE Joint Genome Institute (JGI) 3300021320 Metagenome Analysis spades v. 3.11.1-check Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Host-associated Plants Nodule Roots Unclassified root nodules 34.06 -118.44 492357462 444634 23 56 26 102 SRX4051810 Unrestricted 114.53 Metagenome 3300050229 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Warrenville, Illinois, USA - 75_717_IL_DR_0cm_c3_T0_16O DOE Joint Genome Institute (JGI) 3300050229 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 41.84145 -88.2298 578753667 1024580 223 7 385 16 Restricted 15.42 Metagenome 3300043416 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Gunnison River, Gunnison, Colorado, USA - gunnisonriver_2019_sw_WHONDRS-S19S_0062 DOE Joint Genome Institute (JGI) 3300043416 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.5447 -106.95 363110668 593740 310 39 456 68 Unrestricted 20.33 Metagenome 3300013934 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00685 Weill Cornell Medical College 3300013934 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.78 -73.97 41215436 63908 23 0 21 0 SRX822652 0.0 Metagenome 3300042012 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 DOE Joint Genome Institute (JGI) 3300042012 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.201 -97.9447 502935195 1265748 609 62 1128 95 SRX14829256 Unrestricted 7.32 Metagenome 3300043671 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 253-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043671 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9621 -107.0293 634456978 1705178 482 17 949 31 Unrestricted 7.49 Metagenome 3300024339 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_100_MG DOE Joint Genome Institute (JGI) 3300024339 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca; shallam@interchange.ubc.ca Sean Crowe; Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5847 -123.5008 543577458 1038446 330 11 517 17 SRX4488545 Unrestricted 43.93 Metagenome 3300039437 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 DOE Joint Genome Institute (JGI) 3300039437 Metagenome Analysis MEGAHIT v. 1.2.7 Released on PI's request No Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Host-associated Plants Unclassified Roots Unclassified plant roots -19.2822 -43.5936 2001140003 3329155 1250 77 2290 119 SRX4939668 0.0 Metagenome 3300037206 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 711 S-1-M DOE Joint Genome Institute (JGI) 3300037206 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0475 659943890 1186490 263 33 402 53 SRX8146356 Unrestricted 14.51 Metagenome 3300014326 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG DOE Joint Genome Institute (JGI) 3300014326 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil switchgrass rhizosphere 42.3948 -85.3738 5068850954 11478905 3059 161 5118 306 SRX3900318 Unrestricted 5.3 Metagenome 3300002523 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-1-D DOE Joint Genome Institute (JGI) 3300002523 Metagenome Analysis Yes Yes jsvander@ucdavis.edu Jean VanderGheynst Yes 27981239 Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 349365063 402720 266 12 375 21 SRX2557212 Unrestricted 0.0 Metagenome 3300044651 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Roots microbial communities from millet plant in semiarid region near Thies, Senegal - COC4E DOE Joint Genome Institute (JGI) 3300044651 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Unclassified Roots Unclassified Root 14.75 -16.85 903412990 1356760 24 32 46 69 Unrestricted 27.04 Metagenome 2124908041 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3 v2 (version 2) DOE Joint Genome Institute (JGI) 2124908041 Metagenome Analysis released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 168160852 288476 45 0 86 0 Unrestricted 0.0 Metagenome 3300017778 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D DOE Joint Genome Institute (JGI) 3300017778 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 554792855 1303079 22 5 29 5 SRX8048356 Unrestricted 41.01 Metagenome 3300002367 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 18MAY2011 deep hole epilimnion ns DOE Joint Genome Institute (JGI) 3300002367 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 26679178 60557 48 16 90 43 SRX1989293 Unrestricted 0.0 Metagenome 3300013117 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 900m, 250-2.7um, replicate b Georgia Genomics Facility 3300013117 Metagenome Analysis IDBA 1.1.1 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 510447161 618868 138 5 204 7 0.0 Metagenome 3300054561 *Microbiome Permanent Draft Soil microbial communities from pasture in Hopland Research and Extension Center, CA, USA Soil viral communities from pasture in Hopland Research and Extension Center, CA, USA - T2-H218O-C library kit 1SPlus DOE Joint Genome Institute (JGI) 3300054561 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes trubl1@llnl.gov Gareth Trubl No Environmental Terrestrial Pasture Soil Unclassified Soil 39.00177 -123.06967 63981302 168551 40 0 83 1 Unrestricted 307.54 Metagenome 3300011227 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 10 - S13.1.50.a - transect 1, age 50 years, surface depth). University of Bristol 3300011227 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes EAEloeFadrosh@lbl.gov; maisie.nash@bristol.ac.uk; ama@envs.au.dk Emiley Eloe-Fadrosh; Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 78.92777778 12.25416667 7.5 25394805 66150 61 9 139 21 0.0 Metagenome 3300001144 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1 DOE Joint Genome Institute (JGI) 3300001144 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 16235956 52557 94 24 163 52 SRX3312005 Unrestricted 0.0 Metagenome 3300049447 *Microbiome Permanent Draft Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA - 1_s_oct_JRB_CZO DOE Joint Genome Institute (JGI) 3300049447 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dawsonfairbanks@email.arizona.edu Dawson Fairbanks No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.88243 -106.5341008 888206532 1562331 328 16 546 19 Unrestricted 16.41 Metagenome 3300003412 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD DOE Joint Genome Institute (JGI) 3300003412 Metagenome Analysis Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 338282827 749649 200 11 390 18 SRX2565028 Unrestricted 0.0 Metagenome 3300037133 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPN1-2-S DOE Joint Genome Institute (JGI) 3300037133 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3568 19.0503 655327108 1204034 238 17 365 25 SRX8861442 Unrestricted 12.97 Metagenome 3300002016 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot21B 3300002016 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 10592466 60715 141 3 267 10 0.0 Metagenome 3300004237 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 115_HOW13 DOE Joint Genome Institute (JGI) 3300004237 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 122893003 243510 61 0 112 0 SRX2721192 Unrestricted 0.0 Metagenome 3300045517 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Cordillera ecozone, Canada - Lake 14-570 Genome Quebec 3300045517 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 63.809838 -137.894084 646853125 1274252 365 79 587 118 0.0 Metagenome 3300011907 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00510 Weill Cornell Medical College 3300011907 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.89 -73.85 62651824 93268 22 1 28 1 SRX822479 0.0 Metagenome 3300038300 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI147_2018_nov_10m DOE Joint Genome Institute (JGI) 3300038300 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 322714027 700990 339 145 552 251 SRX9402602 Unrestricted 9.84 Metagenome 3300045831 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_3_D DOE Joint Genome Institute (JGI) 3300045831 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 152616936 181101 96 1 110 1 Unrestricted 101.72 Metagenome 3300034413 *Microbiome Permanent Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Eunicella gazella from Algarve, Portugal - EG15H Molecular Research LP (MR DNA) 3300034413 Metagenome Analysis Metawrap workflow v. 1.0.5 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 8.1 25066347 25773 5 2 8 5 0.0 Metagenome 3300011691 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00971 Weill Cornell Medical College 3300011691 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.82 17034271 26199 9 1 6 1 SRX822933 0.0 Metagenome 3300048558 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Woodchip biofilm microbial communities from lab scale WBR in Cornell University, Ithaca, NY, USA - rep1_drw_p1_w0 DOE Joint Genome Institute (JGI) 3300048558 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 869477951 1636431 473 23 763 39 Unrestricted 9.34 Metagenome 3300007692 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.743 DOE Joint Genome Institute (JGI) 3300007692 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 321116447 628599 336 33 520 84 SRX2753575 Unrestricted 0.0 Metagenome 3300005135 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F14 DOE Joint Genome Institute (JGI) 3300005135 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 52620373 85028 92 0 124 0 SRX3195102 Unrestricted 0.0 Metagenome 7000000659 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 764002286 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000659 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 115598026 192435 0 0 0 0 0.0 Metagenome 3300027650 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67 HiSeq DOE Joint Genome Institute (JGI) 3300027650 Metagenome Analysis spades v. 3.11.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9888 -108.3994 390216164 908249 393 14 674 20 SRX5340870, SRX5340869 Unrestricted 0.0 Metagenome 3300048086 *Microbiome Permanent Draft Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA - 4_d_sep_JRB_CZO DOE Joint Genome Institute (JGI) 3300048086 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dawsonfairbanks@email.arizona.edu Dawson Fairbanks No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.8832033 -106.53744 928155778 1572652 283 4 495 10 Unrestricted 14.5 Metagenome 3300009465 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS842 no min length Marine Biological Laboratory 3300009465 Metagenome Analysis Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow marine hydrothermal vent 18.375164 -81.797067 6.26 152766066 614373 128 9 316 21 0.0 Metagenome 3300042270 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA MBR feed microbial communities from membrane bioreactor in Denver, Colorado, USA - FD_D168 DOE Joint Genome Institute (JGI) 3300042270 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Wastewater Mine water Industrial wastewater Produced water MBR feed 39.7823 -104.9101 637991951 946417 487 4 633 12 Unrestricted 22.04 Metagenome 3300026155 *Microbiome Permanent Draft Anaerobic reactors microbiome study Activated sludge microbial communities from lab. scaled anaerobic digester in Belvaux, Luxembourg - ACS2-11 University of Luxembourg 3300026155 Metagenome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 49.506216 5.943617 350059363 425164 76 4 210 1 0.0 Metagenome 3300005548 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG DOE Joint Genome Institute (JGI) 3300005548 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 5891282618 16143213 4044 429 6368 801 SRX2740171 Unrestricted 0.0 Metagenome 3300002389 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 21SEP2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002389 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 22906629 61919 72 3 130 5 SRX1989923 Unrestricted 0.0 Metagenome 3300009418 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17 DOE Joint Genome Institute (JGI) 3300009418 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 39.48 7.31 438756531 889032 132 0 265 0 SRX2753822 Unrestricted 0.0 Metagenome 3300003121 *Microbiome Finished Mouse gut microbial communities from Washington University in St Louis, Missouri, USA, of lean and obese mice Mouse gut microbial communities from Washington University in St Louis, Missouri, USA - Combined Gut Metagenome from Obese and Lean Mice Washington University in St. Louis 3300003121 Metagenome Analysis Made public because these are downloaded from Genbank No Yes jgordon@wustl.edu Human Gut Community Users Yes 17183312 Host-associated Mammals Large intestine Digestive system Cecum Mouse gut 38.63055 -90.194664 12152194 21621 50 1 102 0 0.0 Metagenome 3300042345 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME07Oct2009-rr0772 DOE Joint Genome Institute (JGI) 3300042345 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 548217767 910222 267 49 347 64 Unrestricted 20.77 Metagenome 3300031948 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060911_MSe1 DOE Joint Genome Institute (JGI) 3300031948 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 272224727 574192 198 0 277 0 SRX6411432 Unrestricted 179.76 Metagenome 3300039050 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample43 King Abdulaziz City for Science and Technology (KACST) 3300039050 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 27.53 34.3 25532917 60206 33 0 82 0 SRX1097612 0.0 Metagenome 3300020324 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000678 (ERX555936-ERR599033) CEA Genoscope 3300020324 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -8.978 -139.2432 260726061 661097 256 17 468 28 0.0 Metagenome 3300026009 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_401 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026009 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 47811615 128644 130 3 228 7 SRX2564781, SRX2581052 Unrestricted 0.0 Metagenome 3300027954 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S3_50_60 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027954 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen Yes 29920461 Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228508 -119.2716818 204577770 520287 220 1 360 4 SRX2523284 Unrestricted 0.0 Metagenome 3300049168 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S16_A_D89 hydrophilic DOE Joint Genome Institute (JGI) 3300049168 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 374139540 659123 229 26 385 31 Unrestricted 26.77 Metagenome 3300037961 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_039 - TARA_R100000482 CEA Genoscope 3300037961 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 18.5839 66.4727 244685478 522002 16 0 27 0 0.0 Metagenome 3300048765 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 P3 30-34 DOE Joint Genome Institute (JGI) 3300048765 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3535 19.0473 371029079 526400 96 8 135 15 Restricted 25.6 Metagenome 3300034979 *Microbiome Finished Coastal sediment microbial communities from Western Antarctica Coastal sediment microbial communities from Western Antarctica - 13_event57 Megahit 57 Michigan State University 3300034979 Metagenome Analysis Megahit v. 1.1 released by Deric Learman No Yes deric.learman@cmich.edu Deric Learman No Environmental Aquatic Coastal Marine Sediment marine sediment -73.2957 -129.5568 268747214 618105 197 23 441 33 0.0 Metagenome 3300045438 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-648 Genome Quebec 3300045438 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.799616 -123.662384 886986707 1894731 402 70 671 123 0.0 Metagenome 3300012231 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT828_2 DOE Joint Genome Institute (JGI) 3300012231 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9778 -107.0022 439594698 934611 361 33 724 57 SRX3539424 Unrestricted 0.0 Metagenome 3300013445 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100273 University of Pennsylvania 3300013445 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12829858 36226 21 4 35 4 SRX756628 0.0 Metagenome 3300029641 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37189R1 Beijing Genomics Institute (BGI) 3300029641 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 75155913 92784 49 0 67 0 0.0 Metagenome 3300025576 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_16_40 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025576 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 329371237 584095 123 0 180 0 SRX3003647 Unrestricted 0.0 Metagenome 3300070241 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_070-M-20200713-COMP-DNA1 3300070241 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 30919678 93246 68 17 123 29 0.0 Metagenome 3300043480 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 031-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043480 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9571 -106.9861 253795935 685816 437 15 756 23 Unrestricted 6.87 Metagenome 3300060382 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210529_02_13 DOE Joint Genome Institute (JGI) 3300060382 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 641071311 976545 267 129 348 180 Unrestricted 22.49 Metagenome 3300007245 *Microbiome Permanent Draft Microbial communities of drinking water treatment system in Champaign, IL, USA Microbial communities of drinking water treatment system from Champaign, IL, USA - before chlorination University of Illinois, Urbana-Champaign 3300007245 Metagenome Analysis Megahit released by JGI data releasing policy No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Built environment Unclassified Unclassified Unclassified Drinking water 40.129478 -88.3626 2271189 2091 0 0 0 0 0.0 Metagenome 3300037041 *Microbiome Permanent Draft Sediment microbial communities from various lakes in Switzerland Sediment microbial communities from Lake Greifen, Zurich, Switzerland - LG_13 DOE Joint Genome Institute (JGI) 3300037041 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mark.lever@usys.ethz.ch Mark Alexander Lever No Environmental Aquatic Lake Freshwater Sediment sediment 47.3519 8.6747 564660248 938989 291 6 459 18 SRX8398750 Unrestricted 14.83 Metagenome 3300019827 *Microbiome Permanent Draft Microbial mat bacterial communities from Rhone River delta, Camargue, France Microbial mat bacterial communities from Rhone River delta, Camargue, France - 4 University of Barcelona 3300019827 Metagenome Analysis velvet released by Mercedes Berlanga No Yes mberlanga@ub.edu Mercedes Berlanga No Environmental Aquatic Unclassified Sediment Unclassified Microbial mats 43.6 4.6 49732618 135448 53 0 91 0 0.0 Metagenome 3300047289 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Sacramento River, California, USA - NASQAN2015_208 DOE Joint Genome Institute (JGI) 3300047289 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 37.676 -121.2663 234628873 516635 420 176 725 281 Unrestricted 33.21 Metagenome 3300002788 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G09K2-12 DOE Joint Genome Institute (JGI) 3300002788 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 227905 778 13 1 27 1 SRX1991307 Unrestricted 0.0 Metagenome 3300032302 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 17-043 Genome Quebec 3300032302 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 47.010232 -66.967572 489442986 1051121 290 65 456 142 0.0 Metagenome 3300043162 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_10 (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043162 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 710529996 1142078 112 6 226 9 SRX8240583 Unrestricted 34.95 Metagenome 3300035243 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Soil microbial communities from West Virginia, United States - Field_WV_1 DOE Joint Genome Institute (JGI) 3300035243 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Environmental Terrestrial Agricultural land Soil Bulk soil soil 39.6589 -79.9058 528682264 1507728 660 37 1222 60 SRX8289793 Unrestricted 6.52 Metagenome 3300009811 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N3_20_30 DOE Joint Genome Institute (JGI) 3300009811 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37379502 -119.2722385 156259819 343233 180 7 313 18 SRX2523280 Unrestricted 0.0 Metagenome 3300009537 *Microbiome Permanent Draft Microbial Role in Biogeochemical Cycling in a Beach Aquifer System Microbial community of beach aquifer porewater from Cape Shores, Lewes, Delaware, USA - D-2W University of Delaware 3300009537 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes fielde14@ecu.edu Erin Field No Environmental Aquatic Unclassified Unclassified Unclassified beach aquifer porewater 38.7855 -75.1045 8.37 888070154 2090828 649 44 1100 75 0.0 Metagenome 3300005879 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_301 DOE Joint Genome Institute (JGI) 3300005879 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 241872915 849953 408 6 771 11 SRX2564884, SRX2581056 Unrestricted 0.0 Metagenome 3300025395 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Jul08 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025395 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 127608812 267398 110 21 183 36 SRX2565401 Unrestricted 0.0 Metagenome 3300059450 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.16W.10 SIP fraction DOE Joint Genome Institute (JGI) 3300059450 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 196477672 373260 166 21 258 25 Unrestricted 0.0 Metagenome 7000000746 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 1, subject 764042746 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000746 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 6322942 10011 0 0 0 0 SRX024108 0.0 Metagenome 3300056629 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.18W.8 SIP fraction DOE Joint Genome Institute (JGI) 3300056629 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 166377006 332013 101 32 165 42 Unrestricted 11.19 Metagenome 3300004026 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Bullhead_CordC_D2 DOE Joint Genome Institute (JGI) 3300004026 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.003361 -122.468277 871143714 2684361 839 11 1800 12 SRX7142159 Unrestricted 0.0 Metagenome 3300010283 *Microbiome Permanent Draft Animal gut microbial communities from fecal samples from Wisconsin, USA Orangutan group fecal microbial communities from Wisconsin, USA - O827 metagenome DOE Joint Genome Institute (JGI) 3300010283 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes apneumann2@wisc.edu Anthony Neumann No Host-associated Mammals Large intestine Digestive system Fecal Orangutan group fecal 43.07 -89.4 254915007 459677 1239 0 1891 0 SRX2505957 Unrestricted 0.0 Metagenome 3300020511 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 15JUL2010 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020511 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 84250011 195942 98 23 164 40 SRX1988903 Unrestricted 0.0 Metagenome 3300040638 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Mid-Atlantic, VA, USA - BLAN_002-M-20170713-COMP-DNA1 Battelle Memorial Institute 3300040638 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Farm Terrestrial soil 39.06026 -78.07164 2399907 7367 30 7 54 11 0.0 Metagenome 3300045106 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_7_A DOE Joint Genome Institute (JGI) 3300045106 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 192440287 237916 111 1 115 1 Unrestricted 91.58 Metagenome 3300012564 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100784 University of Pennsylvania 3300012564 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 16519023 26551 12 2 15 2 SRX756070 0.0 Metagenome 3300008747 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763982056 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008747 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 94446712 123968 79 0 97 0 0.0 Metagenome 3300046334 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_109 DOE Joint Genome Institute (JGI) 3300046334 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 282477091 824874 1401 18 2869 33 Restricted 0.0 Metagenome 3300001783 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from the Cayman Rise, Cayman Islands Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Vondamm Sites 3300001783 Metagenome Analysis IDBA_UD k52-k92 step10 released by JGI data releasing policy No Yes Gregory Dick, Sunit Jain No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 18.35 -81.85 319540913 490677 359 17 626 23 0.0 Metagenome 3300020423 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000315 (ERX556027-ERR599062) CEA Genoscope 3300020423 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 20.8188 63.6158 1068054726 2468961 730 4 1294 7 0.0 Metagenome 3300048670 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from British Columbia, Canada - souththompson_2019_sw_WHONDRS-S195_0004 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300048670 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 50.7753 -119.7215 459108615 742078 304 141 475 201 Unrestricted 0.0 Metagenome 3300039901 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 077_R1_022417 University of Maryland 3300039901 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.53897 19.01736 22366736 36728 50 3 62 2 0.0 Metagenome 3300039697 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 061_R1_022417 University of Maryland 3300039697 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.54482 19.00874 47996957 102440 86 2 127 1 0.0 Metagenome 3300045970 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Microbial mat bacterial communities from freshwater pond, North Slope, Alaska, United States - OKS_Pond6_19June2019 DOE Joint Genome Institute (JGI) 3300045970 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes demerson@bigelow.org David Emerson No Environmental Aquatic Pond Freshwater Unclassified freshwater ferric oxide microbial mat 68.6722 -149.1363 1706723874 2608034 677 129 1018 199 Unrestricted 15.26 Metagenome 3300036669 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Unnamed Lake-13 #426 DOE Joint Genome Institute (JGI) 3300036669 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4737 78.2546 274532395 465913 142 54 197 84 SRX8865257 Unrestricted 38.79 Metagenome 3300006142 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t14_693M_control - microbial_metagenome University of Texas Southwestern Medical Center 3300006142 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 148559318 278452 158 0 181 1 0.0 Metagenome 3300027097 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF019 (SPAdes) DOE Joint Genome Institute (JGI) 3300027097 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 31991470 93599 42 7 75 7 SRX2014343 Unrestricted 0.0 Metagenome 3300042390 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME04Dec2009-rr0859 DOE Joint Genome Institute (JGI) 3300042390 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 609739006 972679 237 32 318 35 Unrestricted 19.88 Metagenome 3300020302 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B000000441 (ERX555996-ERR599018) CEA Genoscope 3300020302 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -35.2528 26.317 87249322 237029 191 13 326 29 0.0 Metagenome 3300039221 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - WEM-3_at_6-7_cm Genome Quebec 3300039221 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89896 -73.80984 1493509642 3549356 1355 46 2844 55 0.0 Metagenome 3300015163 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb1b, glacier snout) University of Bristol 3300015163 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.907119 18.447522 6.6 181694382 378873 145 16 235 29 0.0 Metagenome 3300028923 *Microbiome Permanent Draft Metagenomes from methanogenic benzene-degrading cultures Lab enriched sediment microbial communities from oil refinery in Oklahoma, USA - DGG0 msp Beijing Genomics Institute (BGI) 3300028923 Metagenome Analysis spades v. 3.12.0 Yes Yes camillaln@gmail.com; elizabeth.edwards@utoronto.ca Camilla Nesb?; Elizabeth A. Edwards No Engineered Artificial ecosystem Contaminated soil Soil microcosm Hydrocarbon anaerobic enrichment culture 36.0 -97.0 230638149 493678 124 0 213 0 0.0 Metagenome 3300049207 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - E26_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049207 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 330377275 717695 449 18 862 20 Unrestricted 0.0 Metagenome 3300043563 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime ecozone, Canada - Lake 07-230 Genome Quebec 3300043563 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.831734 -63.719825 784695340 1790688 294 72 482 119 0.0 Metagenome 3300057201 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2020-0031 DOE Joint Genome Institute (JGI) 3300057201 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.70406 -83.25291 585480366 1165620 332 234 514 298 Unrestricted 15.72 Metagenome 3300049927 *Microbiome Permanent Draft Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA - 1_d_apr_JRB_CZO DOE Joint Genome Institute (JGI) 3300049927 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dawsonfairbanks@email.arizona.edu Dawson Fairbanks No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.88243 -106.5341008 750142546 1310852 286 15 496 27 Unrestricted 15.1 Metagenome 3300025623 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_100m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025623 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 382735651 725551 215 8 345 16 Unrestricted 0.0 Metagenome 3300028203 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Site 230 with 3.0UM filter - spades J. Craig Venter Institute 3300028203 Metagenome Analysis Spades v. 3.11.1 Released per Simon Roux. Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater -68.4 78.18278 8.31 10703483 20930 9 1 15 0 0.0 Metagenome 3300070808 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_067-M-20200721-COMP-DNA1 3300070808 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 20974277 67444 89 6 169 8 0.0 Metagenome 3300038475 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 E1 5-9 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300038475 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0467 864770448 1884625 627 10 1109 15 SRX8138224, SRX8138225 Unrestricted 0.0 Metagenome 3300028344 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Club Lake, Antarctica - Metagenome TFF #397 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028344 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5417 78.2467 52954107 87154 24 2 28 4 SRX3241972 Unrestricted 0.0 Metagenome 3300017914 *Microbiome Permanent Draft Marine microbial communities from Caribbean coral reef seawater Marine microbial communities from Caribbean coral reef seawater, Florida Keys, United States - site GB23 University of Illinois, Urbana-Champaign 3300017914 Metagenome Analysis MEGAHIT v1.1.1-2-g02102e1 released by JGI data releasing policy No Yes lweber@whoi.edu Laura Weber No Environmental Aquatic Intertidal zone Marine Coral reef seawater 24.55945 -81.50098 303818165 422949 110 20 122 21 0.0 Metagenome 3300027578 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepA_8h DOE Joint Genome Institute (JGI) 3300027578 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 149916910 303933 145 8 215 17 SRX5245175 Unrestricted 17.03 Metagenome 3300022764 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA16 Version 2 University of New South Wales 3300022764 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 31067558 55584 27 0 50 0 0.0 Metagenome 3300007546 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1547A-02 DOE Joint Genome Institute (JGI) 3300007546 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2314 -123.8828 386524834 738579 313 12 523 13 SRX2753626 Unrestricted 0.0 Metagenome 3300032324 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains Ecozone, Canada - Lake 08-194 Genome Quebec 3300032324 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.261952 -80.641057 534908688 1071847 286 114 454 241 0.0 Metagenome 2070309010 *Microbiome Permanent Draft Bankia setacea gill microbial communities from Puget Sound, Washington, USA Bankia setacea gill microbial communities from Puget Sound, Washington, USA - sunken wood 10383 DOE Joint Genome Institute (JGI) 2070309010 Metagenome Analysis Newbler and/or Velvet No Yes distel@oglf.org Daniel Distel, Dan Distel Yes 25385629 Host-associated Mollusca Gills Respiratory system Extracellular Bankia setacea gill 47.85072 -122.33843 26539887 43560 7 0 10 0 0.0 Metagenome 3300026628 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_10_22 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026628 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 27062018 37087 29 0 35 0 SRX2924868 Unrestricted 0.0 Metagenome 3300010711 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 (PacBio error correction) DOE Joint Genome Institute (JGI) 3300010711 Metagenome Analysis metalrec/blasr v. metalrec version 1.0.2/blasr 1.3.1 released based on JGI ITS Yes Yes cpan@ou.edu Chongle Pan No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 9.1086 -79.8436 39646327 74216 76 0 101 2 SRX5010645, SRX5010646, SRX5010643, SRX5010644, SRX5010641, SRX5010642 Unrestricted 0.0 Metagenome 3300037532 *Microbiome Permanent Draft Bacterial communities from sewage treatment works near Birtley, UK Wastewater bacterial communities from sewage treatment works near Birtley, UK - 01 Northumbria University 3300037532 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes martin.spurr@newcastle.ac.uk Martin Spurr No Engineered WWTP Unclassified Wastewater Unclassified wastewater 54.903212 -1.595078 17272620 34120 85 0 142 1 0.0 Metagenome 3300031821 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20 DOE Joint Genome Institute (JGI) 3300031821 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1750700138 4209181 701 26 1193 36 SRX5820388 Unrestricted 12.54 Metagenome 3300035322 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Seawater microbial communities from Algarve, Portugal - SW04 Euk Molecular Research LP (MR DNA) 3300035322 Metagenome Analysis Metawrap workflow v. 1.0.5 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Environmental Aquatic Oceanic Marine Unclassified seawater 36.979778 -7.989111 4034289 5622 0 1 0 1 0.0 Metagenome 3300040293 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 096_R1_022417 University of Maryland 3300040293 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.71677778 27.10111111 6220930 9743 10 1 14 6 0.0 Metagenome 3300025340 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE20Aug07 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025340 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 53892610 128637 44 37 72 98 SRX2565228 Unrestricted 0.0 Metagenome 3300025762 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC083_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025762 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 39.88 -75.22 663163918 1165894 636 4 934 6 SRX2338909 Unrestricted 0.0 Metagenome 3300007619 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_D2_MG DOE Joint Genome Institute (JGI) 3300007619 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Terrestrial Wetlands Soil Unclassified Soil 37.4962 -122.1329 612966947 1283195 505 23 927 25 SRX2753767 Unrestricted 0.0 Metagenome 2044078002 *Microbiome Permanent Draft Switchgrass, Maize and Miscanthus rhizosphere microbial communities from University of Illinois Energy Farm, Urbana, IL Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL University of Illinois, Urbana-Champaign 2044078002 Metagenome Analysis No Yes lixz@illinois.edu Xiangzhen Li No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass, Maize and Miscanthus rhizosphere 40.109 -88.204 27992371 81222 33 0 54 0 0.0 Metagenome 3300021469 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-4-5_MG DOE Joint Genome Institute (JGI) 3300021469 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.0114 -110.5956 417006857 883977 477 2 722 3 SRX3982332 Unrestricted 19.19 Metagenome 3300032063 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17 DOE Joint Genome Institute (JGI) 3300032063 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1300828805 3227603 436 10 772 12 SRX5817466 Unrestricted 12.27 Metagenome 3300042126 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0218F_E14_070516_87 DOE Joint Genome Institute (JGI) 3300042126 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.1836 -97.9974 226173753 660862 327 14 639 23 Unrestricted 7.36 Metagenome 3300035403 *Microbiome Permanent Draft Extreme environments viral communities from various locations Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 535_ROV-KIPs DOE Joint Genome Institute (JGI) 3300035403 Metagenome Analysis spades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified filtered seawater 13.3447 -44.9133 20905489 30485 13 7 31 19 SRX7709984 Unrestricted 684.88 Metagenome 3300027181 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027181 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 150970889 400547 257 36 499 68 SRX2021675, SRX1985857, SRX1985856 Unrestricted 0.0 Metagenome 3300050351 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 S3 1-5 DOE Joint Genome Institute (JGI) 3300050351 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3532 19.0475 719492701 1158592 236 22 359 39 Restricted 11.53 Metagenome 3300044507 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - WIN12-9-12-19 DOE Joint Genome Institute (JGI) 3300044507 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.4552 -120.5194 663181412 1626225 616 22 1100 27 Restricted 6.82 Metagenome 3300025275 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP1649 (SPAdes) DOE Joint Genome Institute (JGI) 3300025275 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -5.74 -170.77 144170637 289279 181 2 281 2 SRX1982440 Unrestricted 0.0 Metagenome 3300034521 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from deep shales in Oklahoma, United States - M2-7-2 DOE Joint Genome Institute (JGI) 3300034521 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back fracking water 35.784 -98.26 208117037 310198 258 4 283 4 SRX8135601 Unrestricted 280.58 Metagenome 3300027849 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027849 Metagenome Analysis spades v. 3.11.1 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 79.0225 -9.5247 1572477610 2981981 488 429 530 598 SRX2997752 Unrestricted 0.0 Metagenome 3300070401 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_037-O-20190715-COMP-DNA1 3300070401 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 22703127 69414 57 10 95 11 0.0 Metagenome 3300013490 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01004 Weill Cornell Medical College 3300013490 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.59 -73.8 20211445 33253 13 4 15 7 SRX822966 0.0 Metagenome 3300013925 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00694 Weill Cornell Medical College 3300013925 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.82 -73.94 25195107 31712 20 0 24 0 SRX822661 0.0 Metagenome 3300024177 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK27 DOE Joint Genome Institute (JGI) 3300024177 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 130433202 348878 278 22 517 41 SRX4547524 Unrestricted 8.29 Metagenome 3300041807 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - A_31_wk_4 DOE Joint Genome Institute (JGI) 3300041807 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9659 -106.983 281828780 747990 338 11 578 18 SRX14808480 Unrestricted 8.85 Metagenome 3300007290 *Microbiome Permanent Draft Hydrothermal vent microbial communities from Crab Spa hydrothermal vent, East Pacific Rise Hydrothermal vent microbial communities from Crab Spa hydrothermal vent, East Pacific Rise - large volume pump, sample 2 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300007290 Metagenome Analysis MEGAHit released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Hydrothermal fluid 9.844167 -104.296667 109826745 295524 741 27 1279 59 0.0 Metagenome 3300036801 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in California, United States - CAS_6 DOE Joint Genome Institute (JGI) 3300036801 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil 37.0 -122.2 1855056957 2948067 469 23 771 33 SRX8385988 Unrestricted 12.27 Metagenome 3300027252 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S PM (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027252 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 165525723 403464 323 25 624 49 SRX2574900 Unrestricted 0.0 Metagenome 3300013205 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100240 University of Pennsylvania 3300013205 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 20395713 35336 18 0 32 0 SRX756661 0.0 Metagenome 3300043011 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver stomach microbial communities from Maple Ridge, British Columbia, Canada - Beaver4Stomach1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043011 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Stomach Digestive system Unclassified stomach 49.18 -122.54 98061076 173776 2 2 10 3 SRX8345910 Unrestricted 39.84 Metagenome 3300000727 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 5 DOE Joint Genome Institute (JGI) 3300000727 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 30239716 75846 69 1 132 1 SRX4338206 Unrestricted 0.0 Metagenome 3300003499 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN DOE Joint Genome Institute (JGI) 3300003499 Metagenome Analysis Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 199851071 479020 429 111 738 161 Unrestricted 0.0 Metagenome 3300021487 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Coastal seawater microbial communities from Marineland, Florida, United States - SWA TP1 #1 DOE Joint Genome Institute (JGI) 3300021487 Metagenome Analysis spades v. 3.11.1-check Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6703 -81.2145 152654475 237063 172 0 194 0 SRX3985496 Unrestricted 52.52 Metagenome 3300035208 *Microbiome Draft Leachate and groundwater microbial communities from a municipal landfill and adjacent aquifer in Southern Ontario, Canada Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - LW64-88 2017 University of Waterloo 3300035208 Metagenome Analysis spades v. 3.11.1 released by JGI data releasing policy No Yes laura.hug@uwaterloo.ca Laura Hug No Engineered Solid waste Unclassified Landfill Unclassified Leachate 43.442 -80.577 1662740112 3782563 1184 7 2285 4 0.0 Metagenome 3300038628 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-2-S (v2) (version 2) DOE Joint Genome Institute (JGI) 3300038628 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 532621090 1310649 527 11 949 11 SRX8137876, SRX8137875 Unrestricted 0.0 Metagenome 2209111003 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC1 University of Sao Paulo, Virginia Bioinformatics Institute 2209111003 Metagenome Analysis newbler No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 23637931 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 506013979 1520190 0 0 0 0 0.0 Metagenome 3300002411 *Microbiome Permanent Draft Phenol degrading bioreactor microbial communities from Hong Kong Phenol degrading bioreactor microbial communities from Hong Kong - Uncultured Sulfurovum Beijing Genomics Institute (BGI) 3300002411 Metagenome Analysis released per JGI data release policy No Yes richieju520@gmail.com Feng Ju No Engineered Bioreactor Unclassified Wastewater Unclassified Phenol degrading bioreactor 1793186 1891 1 0 1 0 0.0 Metagenome 3300014538 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS60_6 University of Hohenheim 3300014538 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 87641835 136201 66 0 103 0 0.0 Metagenome 7000000397 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159733294 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000397 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 148130080 227705 0 0 0 0 0.0 Metagenome 3300014145 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, USA - P5_0mM MetaG DOE Joint Genome Institute (JGI) 3300014145 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 86920228 94621 11 11 9 26 SRX3780029 Unrestricted 102.95 Metagenome 2065487005 *Microbiome Permanent Draft Human fecal microbial communities from Baylor College of Medicine, Texas, USA, mock community Human fecal microbial communities from Baylor College of Medicine, Texas, USA, mock community - Mock Staggered Illumina CeleraAssembler Baylor College of Medicine 2065487005 Metagenome Analysis released per JGI data release policy No Yes xqin@bcm.tmc.edu Xiang Qin No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 29.7 -95.38 32610999 81812 99 0 188 0 0.0 Metagenome 3300040498 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Temperate deciduous broadleaf forest soil microbial communities from Baltimore, USA - 003_R1_022417 University of Maryland 3300040498 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate deciduous broadleaf forest soil 39.35503333 -76.60903333 3556678 11229 32 3 66 4 0.0 Metagenome 3300040981 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A28_80cm_6M University of Tennessee 3300040981 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 45481632 101582 61 3 136 3 SRX710594 0.0 Metagenome 3300041470 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover leaf microbial community from Lincoln, Canterbury, New Zealand - WCL17_4 MetaG AgResearch, New Zealand, Mosgeil 3300041470 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 881476476 1697296 288 42 979 91 0.0 Metagenome 3300039823 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 030_R1_022417 University of Maryland 3300039823 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.26724167 25.01248056 31436641 56054 60 0 82 0 0.0 Metagenome 3300001528 *Microbiome Permanent Draft Primate fecal viral communities from Gombe National Park, Tanzania Virome of Chimps sample 1 3300001528 Metagenome Analysis IDBA-ud released by JGI data releasing policy No Yes yogeshwar.kelkar@yale.edu Yogeshwar Kelkar No Host-associated Mammals Large intestine Digestive system Fecal Primate fecal -4.4 29.38 448696896 784934 375 12 784 21 0.0 Metagenome 3300031675 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - CB21_SCM DOE Joint Genome Institute (JGI) 3300031675 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified Marine 74.0136 -139.5971 705228464 1390964 480 139 861 277 SRX5797762 Unrestricted 19.06 Metagenome 3300015247 *Microbiome Permanent Draft Seawater microbial communities from hydrothermal vent in East China Sea, Taiwan, China Seawater microbial communities from hydrothermal vent in East China Sea, Taiwan, China - gui-2014 bottom metaG Shanghai Hanyu Bio-Tech Co., Ltd 3300015247 Metagenome Analysis SOAPdenovo v2.04 released by JGI data releasing policy No Yes zhanglianbao425@outlook.com lin zhang No Environmental Aquatic Unclassified Thermal springs Unclassified seawater 25.0 128.0 84132390 310055 29 5 71 6 0.0 Metagenome 3300025897 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025897 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de; raperrier@lbl.gov; agrieb@mpi-bremen.de Hanno Teeling; Rene A. Perrier; Anissa Grieb Yes 31316134 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Pelagic marine 54.184167 7.9 1275340420 2649529 688 129 1343 202 SRX802189 Unrestricted 0.0 Metagenome 3300042933 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-322 Genome Quebec 3300042933 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.536695 -119.499488 1690053819 3720386 710 171 1128 274 0.0 Metagenome 3300002122 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_2 DOE Joint Genome Institute (JGI) 3300002122 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 511636308 1375138 823 3 1361 8 SRX1990948 Unrestricted 0.0 Metagenome 3300045698 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - COA4D DOE Joint Genome Institute (JGI) 3300045698 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 407539783 776142 283 20 564 18 Unrestricted 21.66 Metagenome 3300011838 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00683 Weill Cornell Medical College 3300011838 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.78 -73.97 36535779 64848 24 0 44 0 SRX822650 0.0 Metagenome 3300028801 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3 DOE Joint Genome Institute (JGI) 3300028801 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 1068971849 2341653 317 60 472 91 SRX5355868 Unrestricted 0.0 Metagenome 3300004828 *Microbiome Permanent Draft Dynamics of growth and succession of bacterial and fungal communities during composting of sugarcane filter cake Sugarcane filter cake compost microbial communities from Ribeirao Preto, Sao Paulo State, Brazil. Center for Advanced Technologies in Genomics, Sao Paulo University 3300004828 Metagenome Analysis Newbler 2.9 released per JGI data release policy No Yes renatoacsantos@gmail.com Renato Santos, Renato A. Santos No Engineered Solid waste Composting Agricultural waste Sugarcane filter cake Sugarcane filter cake compost -21.17 -47.8 6.6-8.8 44842082 78157 167 2 276 3 0.0 Metagenome 3300044462 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_128 DOE Joint Genome Institute (JGI) 3300044462 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 523783112 1241469 332 8 608 18 Unrestricted 7.53 Metagenome 3300047542 *Microbiome Permanent Draft Floating fern leaf microbial communities from various locations Floating fern leaf microbial communities from Santa Maria, State of Rio Grande do Sul, Brazil - 3017_IRRI DOE Joint Genome Institute (JGI) 3300047542 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dave.armitage@gmail.com David Armitage No Host-associated Plants Phylloplane/Leaf Phyllosphere Endophytes Leaf -29.6713 -53.781 30594943 32910 11 1 14 2 Unrestricted 686.71 Metagenome 3300056700 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.5W.11 SIP fraction DOE Joint Genome Institute (JGI) 3300056700 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 212690613 365095 182 41 311 66 Unrestricted 14.09 Metagenome 3300020335 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000768 (ERX556030-ERR599035) CEA Genoscope 3300020335 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -47.1906 -58.2682 308967777 685264 204 39 264 75 0.0 Metagenome 3300069390 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Mountain Lake Biological Station, Appalachians & Cumberland Plateau, VA, USA - MLBS_001-M-20180611-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069390 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.37828 -80.52484 34073603 103712 72 4 139 7 0.0 Metagenome 3300048998 *Microbiome Permanent Draft Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA - CNF8ET6 DOE Joint Genome Institute (JGI) 3300048998 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sydneyg@ucr.edu Sydney Glassman No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 33.6681 -117.456 1147710995 1919062 546 111 868 150 Unrestricted 13.21 Metagenome 3300012427 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100254 University of Pennsylvania 3300012427 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4839157 12678 5 0 8 0 SRX756647 0.0 Metagenome 3300008575 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764083206 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008575 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 164309080 228317 109 0 149 0 0.0 Metagenome 3300025969 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_CordB_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025969 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.13147 -122.265465 97023445 210475 160 0 273 0 SRX7146200 Unrestricted 0.0 Metagenome 3300033113 *Microbiome Permanent Draft Microbial communities from various environments in Magnetic Island Reef, Townsville, Australia Sponge tissue microbial communities from Magnetic Island Reef, Townsville, Australia - 36387 AGRF 3300033113 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes b.glasl@aims.gov.au Bettina Glasl No Host-associated Porifera Unclassified Sponge Unclassified Sponge tissue -19.1531 146.8641 443313634 988773 116 6 203 20 0.0 Metagenome 3300037446 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - HLP_050217 DOE Joint Genome Institute (JGI) 3300037446 Metagenome Analysis metaspades v. 3.13.0 Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.896 -89.3636 299782019 758626 350 18 656 37 SRX9381728 Unrestricted 7.0 Metagenome 3300043327 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-348 Genome Quebec 3300043327 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.068451 -112.718615 1237216055 2917563 247 25 395 50 0.0 Metagenome 3300031223 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #987 DOE Joint Genome Institute (JGI) 3300031223 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.457 78.1911 443679279 721006 151 44 180 81 SRX5649548 Unrestricted 33.07 Metagenome 3300004112 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2) (version 3) DOE Joint Genome Institute (JGI) 3300004112 Metagenome Analysis Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 1233816129 3557478 706 167 1300 443 SRX2565077, SRX2565078, SRX2565079 Unrestricted 0.0 Metagenome 3300008120 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA University of Michigan 3300008120 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7026 -83.2538 8.738 543389618 948536 226 162 333 218 0.0 Metagenome 3300002818 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A2a-10 DOE Joint Genome Institute (JGI) 3300002818 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 367562 1295 26 0 43 0 SRX1991121 Unrestricted 0.0 Metagenome 3300009781 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_STIC12_MetaG DOE Joint Genome Institute (JGI) 3300009781 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 41.84 -87.68 1141446515 2269833 873 3 1369 10 SRX2338948 Unrestricted 0.0 Metagenome 3300025049 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-55 (SPAdes) DOE Joint Genome Institute (JGI) 3300025049 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 49.567 -138.6676 106437599 312108 8 1 14 5 Unrestricted 0.0 Metagenome 3300028136 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 9D DOE Joint Genome Institute (JGI) 3300028136 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 378306580 829837 289 33 435 51 SRX5171239 Unrestricted 18.35 Metagenome 3300020228 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-10m DOE Joint Genome Institute (JGI) 3300020228 Metagenome Analysis spades v. 3.10.1 Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.688 -93.689 478130128 1095764 439 9 788 12 SRX3984345 Unrestricted 19.12 Metagenome 3300028669 *Microbiome Permanent Draft Sewage microbial communities from Oakland, California, United States Sewage microbial communities from Oakland, California, United States - Biofuel 10 (PacBio Assembly) DOE Joint Genome Institute (JGI) 3300028669 Metagenome Analysis HGAP4 v. HGAP4;SMRT Link 5.1.0.26412 Yes Yes hrbeller@lbl.gov Harry Beller No Engineered Wastewater Unclassified Sewage Unclassified sewage 37.82 -122.29 27107914 31719 33 0 34 0 SRX8667830, SRX8667831 Unrestricted 231.45 Metagenome 3300046693 *Microbiome Permanent Draft Soil microbial communities from Blodgett Forest Research Station, California, USA Soil microbial communities from Blodgett Forest Research Station, California, USA - BWE201406031H1020 DOE Joint Genome Institute (JGI) 3300046693 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.912 -120.6615 247541678 460843 307 82 638 125 Unrestricted 17.07 Metagenome 3300013232 *Microbiome Permanent Draft Sediment microbial communities from Acid Mine Drainage (AMD) holding pond in Pittsburgh, PA, USA Sediment microbial communities from Acid Mine Drainage holding pond in Pittsburgh, PA, USA - S1 University of California, Davis 3300013232 Metagenome Analysis MegaHit released per PI's request No Yes mclimcj13@juniata.edu Christopher McLimans No Engineered Wastewater Mine water Industrial wastewater Sediment sediment 40.44 -79.99 984164845 1983920 811 32 1616 52 0.0 Metagenome 3300031903 *Microbiome Permanent Draft Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 DOE Joint Genome Institute (JGI) 3300031903 Metagenome Analysis spades v. 3.12.0 Yes Yes agaudin@ucdavis.edu Amelie Gaudin No Host-associated Plants Rhizosphere Roots Soil rhizosphere 38.5 -121.7 3356044670 8543336 2106 119 3701 200 SRX5799628 Unrestricted 8.4 Metagenome 3300027594 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Colum_RepA_8h DOE Joint Genome Institute (JGI) 3300027594 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 152479499 285290 108 9 148 9 SRX5245241 Unrestricted 19.34 Metagenome 3300017686 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_12SEP2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017686 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 245525664 456195 93 117 135 173 SRX3926926 Unrestricted 8.62 Metagenome 3300028408 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #430 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028408 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 124249850 195723 46 19 62 29 SRX2526859 Unrestricted 0.0 Metagenome 3300036923 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5WB15 DOE Joint Genome Institute (JGI) 3300036923 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 622218571 1531231 534 40 1038 72 SRX8379509 Unrestricted 5.54 Metagenome 3300022356 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL2BM2 JM29 AGRF 3300022356 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.006972 115.520541 34974312 64582 28 2 44 3 0.0 Metagenome 3300048888 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Soil microbial communities from greenhouse in W.K. Kellogg Biological Station, Michigan, USA - CIR soil_7s unlabeled DOE Joint Genome Institute (JGI) 3300048888 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Environmental Terrestrial Unclassified Soil Unclassified Soil 42.40581 -85.40228 1418887420 2383953 565 34 853 52 Unrestricted 14.27 Metagenome 2199352004 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion v1 DOE Joint Genome Institute (JGI) 2199352004 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 71094217 160817 91 0 176 0 Unrestricted 0.0 Metagenome 3300025987 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_203 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025987 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 61703542 168162 158 4 305 6 SRX2564565, SRX2581062 Unrestricted 0.0 Metagenome 3300064917 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 727 in Wetaskiwin, Alberta, Canada - S00JY_0302 Microbiome Insights 3300064917 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.53069413 -113.1733318 7580392 11974 19 0 20 0 0.0 Metagenome 3300049683 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_B_3_control DOE Joint Genome Institute (JGI) 3300049683 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 321051275 706120 408 38 819 62 Unrestricted 11.65 Metagenome 3300042847 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193 NMDC pilot DOE Joint Genome Institute (JGI) 3300042847 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040592 -106.9484972 779041942 2040903 589 26 1143 52 SRX5354725 0.0 Metagenome 3300042161 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A1 University of California, Davis 3300042161 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 277620251 766157 372 9 618 9 0.0 Metagenome 3300000195 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 150m DOE Joint Genome Institute (JGI) 3300000195 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.35 -123.29 70968149 160709 47 4 106 5 Unrestricted 0.0 Metagenome 3300006791 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_02_40cm DOE Joint Genome Institute (JGI) 3300006791 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 1216295312 2802608 1201 72 2135 108 SRX2726145 Unrestricted 0.0 Metagenome 3300026475 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-A DOE Joint Genome Institute (JGI) 3300026475 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 170286574 444873 214 19 404 23 SRX4801697 Unrestricted 9.63 Metagenome 3300011431 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT157_2 DOE Joint Genome Institute (JGI) 3300011431 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9775 -107.0028 439920383 963009 446 21 850 51 SRX3539332 Unrestricted 0.0 Metagenome 3300071104 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_044-M-20200707-COMP-DNA1 3300071104 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 7824548 25550 47 6 81 25 0.0 Metagenome 3300040042 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, Pacific Southwest, CA, USA - SJER_048-M-20170314-COMP-DNA1 Battelle Memorial Institute 3300040042 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.10878 -119.73228 14656928 40337 79 3 136 11 0.0 Metagenome 3300049354 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MCF3 DOE Joint Genome Institute (JGI) 3300049354 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 243865808 701592 341 6 592 10 Unrestricted 6.51 Metagenome 3300049721 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 E2 10-14 DOE Joint Genome Institute (JGI) 3300049721 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3534 19.0467 446876386 723563 235 4 360 7 Restricted 13.12 Metagenome 3300070587 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_042-M-20180723-COMP-DNA1 Battelle Memorial Institute 3300070587 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.129092 -99.245921 6.07-6.37 19346645 60382 52 5 96 7 0.0 Metagenome 3300025025 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 4m metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025025 Metagenome Analysis spades v. 3.11.1 Yes Yes eaeloefadrosh@lbl.gov; rstepanauskas@bigelow.org; sari.peura@slu.se; jkjarett@lbl.gov Emiley Eloe-Fadrosh; Ramunas Stepanauskas; Sari Peura; Jessica Jarett No Environmental Aquatic Lake Freshwater Unclassified freshwater lake hypolimnion 61.5637 22.044 7538799 19430 17 1 35 4 SRX2839451 Unrestricted 0.0 Metagenome 3300011352 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100705 University of Pennsylvania 3300011352 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9466596 17076 6 4 15 5 SRX756145 0.0 Metagenome 3300034628 *Microbiome Permanent Draft Extreme environments viral communities from various locations Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2961 DOE Joint Genome Institute (JGI) 3300034628 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified filtered seawater 14.7528 -44.9788 84114220 222684 16 8 33 10 SRX7583410 Unrestricted 82.49 Metagenome 3300047477 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Flint River, Newton, Georgia, USA - flintriver_2019_sw_WHONDRS-S19S_0015 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047477 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 31.1858 -84.4372 528534414 835096 430 75 668 74 Unrestricted 0.0 Metagenome 3300040962 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Seawater microbial communities from Western North Atlantic Ocean - Oce5_SurfDC DOE Joint Genome Institute (JGI) 3300040962 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Oceanic Marine Unclassified seawater 35.0018 -73.5968 249037583 440921 153 50 225 74 SRX9641547 Unrestricted 19.8 Metagenome 3300021501 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FRT_1-2_MG DOE Joint Genome Institute (JGI) 3300021501 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 145747551 366618 255 20 407 27 SRX3982387 Unrestricted 7.13 Metagenome 3300012593 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100582 University of Pennsylvania 3300012593 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 18665916 37922 31 2 50 5 SRX756172 0.0 Metagenome 2225789004 *Microbiome Draft Passalidae beetle gut microbial communities from Costa Rica Passalidae beetle gut microbial communities from Costa Rica -Larvae (4BL+4ML+4MSL) DOE Joint Genome Institute (JGI) 2225789004 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS No Yes davidhs@lsi.umich.edu, davidhs@umich.edu David Sherman No Host-associated Arthropoda: Insects Gut Larva Unclassified Passalidae beetle gut 10.207151 -84.007673 402413667 832561 671 0 1162 0 Unrestricted 0.0 Metagenome 3300039156 *Microbiome Permanent Draft Organic and conventional farm associated microbial communities from Canada and USA Wastewater microbial communities from conventional feedlot in Alberta, Canada - WW126 Colorado State University 3300039156 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 50.34 -113.77 164915359 304801 204 0 344 0 0.0 Metagenome 3300023031 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-313 DOE Joint Genome Institute (JGI) 3300023031 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Unclassified Plant litter Unclassified leaf litter 40.2526 -123.026 79404890 155617 38 34 50 54 SRX4392940 Unrestricted 47.46 Metagenome 3300050290 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_51 DOE Joint Genome Institute (JGI) 3300050290 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -75.482 159.591 403011290 610990 102 11 145 17 SRX18236973 Restricted 27.04 Metagenome 3300003387 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A2w-12 DOE Joint Genome Institute (JGI) 3300003387 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 335218 1120 20 1 42 3 SRX2576252 Unrestricted 0.0 Metagenome 3300001875 *Microbiome Permanent Draft Desert and grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils - Sample 1 3300001875 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Terrestrial Unclassified Soil Grasslands Desert and grassland soil 23.850674 69.734802 0 0 0 0 0 0 0.0 Metagenome 3300021399 *Microbiome Draft Cattle and sheep rumen microbial communities from New Zealand, for comparative studies Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly DOE Joint Genome Institute (JGI) 3300021399 Metagenome Analysis SPADES 3.11.0 released per Natalia and Tijana Yes Yes cfan@lbl.gov; NNIvanova@lbl.gov Hei Fan; Natalia Ivanova No Host-associated Mammals Stomach Digestive system Rumen Cattle and sheep rumen -42.26 171.6 2322534639 4329615 1525 25 2681 37 0.0 Metagenome 3300019748 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BRC_4-5_MG DOE Joint Genome Institute (JGI) 3300019748 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 160351220 384498 241 12 489 23 Unrestricted 3.66 Metagenome 3300048004 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_120912.NP2 DOE Joint Genome Institute (JGI) 3300048004 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 705768773 1523414 469 122 695 214 Unrestricted 10.49 Metagenome 3300071080 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_045-M-20210310-COMP-DNA1 3300071080 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 59523 210 7 0 11 0 0.0 Metagenome 3300009623 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_19_10 DOE Joint Genome Institute (JGI) 3300009623 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 305622201 597987 241 27 406 41 SRX3005979 Unrestricted 0.0 Metagenome 3300026521 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in the Atlantic and Pacific Ocean Hydrothermal vent microbial communities from East Pacific Rise, Pacific Ocean - CV88 DOE Joint Genome Institute (JGI) 3300026521 Metagenome Analysis spades v. 3.11.1 Yes Yes pgirguis@oeb.harvard.edu Peter Girguis No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent 9.8441 -104.2967 395783452 750764 401 9 614 8 SRX4801599 Unrestricted 33.71 Metagenome 3300050546 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf microbial communities from Olympic Peninsula, Washington, USA - D0_SEK1_2 DOE Joint Genome Institute (JGI) 3300050546 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Alder tree leaf 48.165 -124.244 227257293 299640 50 51 80 67 Unrestricted 37.26 Metagenome 3300003369 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Incubations 002-22A DOE Joint Genome Institute (JGI) 3300003369 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.28381 -156.5985 586138903 1294191 488 10 820 14 SRX1990916 Unrestricted 0.0 Metagenome 3300012119 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC072 MetaG DOE Joint Genome Institute (JGI) 3300012119 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 34.6815 -78.5955 116528175 195052 15 37 15 71 SRX3539711 Unrestricted 0.0 Metagenome 3300044998 *Microbiome Permanent Draft Microbial mat bacterial communities from hot springs in Waikite Valley, Taupo Volcanic Zone, New Zealand Microbial mat bacterial communities from hot spring in Waikite Valley, New Zealand - LMW_ETR_NZ_2018_Waikite_S_2 DOE Joint Genome Institute (JGI) 3300044998 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes LMWARD@post.harvard.edu Lewis Ward No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats microbial mat -38.3276 176.3016 1151136385 1462829 437 10 540 10 Unrestricted 34.12 Metagenome 3300070355 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Alaska, USA - DEJU_001-O-20170619-COMP-DNA1 3300070355 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 969234 3387 14 3 25 5 0.0 Metagenome 3300007724 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763961826 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007724 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 126660697 162993 84 0 95 0 0.0 Metagenome 3300070569 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Treehaven, Wisconsin, USA - TREE_003-M-20170707-COMP-DNA1 Battelle Memorial Institute 3300070569 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 45.490243 -89.577675 5.78-6.12 23484324 73796 104 5 178 12 0.0 Metagenome 3300013360 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01308 Weill Cornell Medical College 3300013360 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.78 -73.94 17261857 31643 6 0 15 0 SRX823248 0.0 Metagenome 3300013742 *Microbiome Permanent Draft Oral microbial communities from fossilized dental plaque from Dalheim, Germany Oral microbial communities from fossilized dental plaque from Dalheim, Germany - S3-Shot-B61-calc University of Oklahoma 3300013742 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skeletonized remains Remains Dental calculus Fossilized dental plaque 51.565093 8.849015 47898252 122582 86 0 194 0 SRX340012 0.0 Metagenome 3300002110 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A1-10 DOE Joint Genome Institute (JGI) 3300002110 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 460743 1654 28 0 51 0 SRX1990305, SRX1990306 Unrestricted 0.0 Metagenome 7000000502 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765560005 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000502 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 48087350 100441 0 0 0 0 0.0 Metagenome 3300039707 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_016-M-20131114-COMP-DNA1 Argonne National Laboratory 3300039707 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 45777419 123365 69 16 119 19 0.0 Metagenome 3300008112 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-100-LTR University of Michigan 3300008112 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.8271 -83.1945 9.128 452155489 604051 25 38 34 70 0.0 Metagenome 3300011130 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01340 Weill Cornell Medical College 3300011130 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.84 -73.83 19877631 23240 5 0 15 0 SRX823280 0.0 Metagenome 3300035019 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Myxacorys californica WJT36-NPBG1 and co-occurring heterotrophs from soil from Joshua Tree National Park, Mojave Desert, California, United States - 20181207_30 DOE Joint Genome Institute (JGI) 3300035019 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Desert Soil Unclassified Soil 34.0413 -116.145 39808379 45589 28 3 29 3 SRX8239128 Unrestricted 243.98 Metagenome 3300039071 *Microbiome Permanent Draft Freshwater lake viral communities from Lake Michigan, near Chicago, USA Freshwater lake viral communities from Lake Michigan, near Chicago, USA- 95Street140708.1V Genewiz Inc., Loyola University 3300039071 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.7189 -87.5256 22017830 47044 32 0 47 0 0.0 Metagenome 3300038566 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - CAR3 Michigan State University 3300038566 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 31.0 -117.0 32348354 80776 5 0 14 0 0.0 Metagenome 3300014129 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_001 The George Washington University (GWU) 3300014129 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 11418766 26841 21 10 26 20 SRX656259 0.0 Metagenome 3300042460 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21May2013-rr0439 DOE Joint Genome Institute (JGI) 3300042460 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 758174263 1170203 243 33 303 39 Unrestricted 20.9 Metagenome 3300000921 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and P2 (1) DOE Joint Genome Institute (JGI) 3300000921 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 37446857 57835 41 0 80 0 SRX3311660 Unrestricted 0.0 Metagenome 3300027671 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027671 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Host-associated Plants Rhizosphere Roots Soil Vadose zone soil 39.7291 -123.6419 477410113 1042850 261 20 430 31 SRX2933099 Unrestricted 0.0 Metagenome 3300045000 *Microbiome Permanent Draft Soil microbial communities from Blodgett Forest Research Station, California, USA Soil microbial communities from Blodgett Forest Research Station, California, USA - BWE201406033C1020_TS DOE Joint Genome Institute (JGI) 3300045000 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.912 -120.6612 1043704120 1710868 433 33 661 40 Unrestricted 13.7 Metagenome 3300027416 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary, USA - metaG S.757 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027416 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.234 -123.9135 243652508 554235 349 64 607 121 SRX2838000 Unrestricted 23.47 Metagenome 3300018417 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300018417 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1495661230 3283914 1397 147 2780 267 SRX4068617 Unrestricted 19.25 Metagenome 3300001666 *Microbiome Permanent Draft Marine microbial communities from the Santa Barbara Basin, California, USA barBioS 3300001666 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes dsjones@umn.edu, daniel.s.jones@nmt.edu Daniel Jones No Environmental Aquatic Cold seeps Marine Sediment Marine 13.2648 -59.4253 6472219 19173 138 21 2392 183 0.0 Metagenome 3300001139 *Microbiome Permanent Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil v2 (version 2) DOE Joint Genome Institute (JGI) 3300001139 Metagenome Analysis Velvet released based on JGI ITS Yes Yes janet.jansson@pnnl.gov Janet Jansson Yes 30158906 Environmental Terrestrial Unclassified Soil Grasslands Soil 43.303333 -89.3325 6.8 1904119593 8302685 3658 139 7562 231 Unrestricted 0.0 Metagenome 3300009762 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_17_40 DOE Joint Genome Institute (JGI) 3300009762 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 444612018 813092 232 9 377 9 SRX3005980 Unrestricted 0.0 Metagenome 3300042251 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D326_1 DOE Joint Genome Institute (JGI) 3300042251 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 205097720 293342 165 6 215 7 Unrestricted 74.11 Metagenome 3300060417 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210601_05_21 DOE Joint Genome Institute (JGI) 3300060417 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 1118234117 1672696 395 126 499 185 Unrestricted 33.8 Metagenome 3300000201 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 54 02/08/11 135m DOE Joint Genome Institute (JGI) 3300000201 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 76691166 163854 59 0 110 2 Unrestricted 0.0 Metagenome 3300030005 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N3_2 DOE Joint Genome Institute (JGI) 3300030005 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 590862182 1513347 1203 204 2075 307 SRX5355626 Unrestricted 8.96 Metagenome 3300013584 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100199 University of Pennsylvania 3300013584 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 2569820 6709 7 0 17 0 SRX756700 0.0 Metagenome 3300008421 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 763961826 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008421 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 102126364 139258 111 0 144 0 0.0 Metagenome 3300065617 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 806 in Chinook, Alberta, Canada - S00JY_0260 Microbiome Insights 3300065617 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.26457862 -110.5952179 31013001 46117 30 1 72 0 0.0 Metagenome 3300026314 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_02_30cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026314 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 354706586 631022 237 17 391 23 SRX2727979 Unrestricted 0.0 Metagenome 3300045184 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_4_C DOE Joint Genome Institute (JGI) 3300045184 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 148326541 183044 80 1 99 2 Unrestricted 91.36 Metagenome 3300032665 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18007 DOE Joint Genome Institute (JGI) 3300032665 Metagenome Analysis spades v. 3.13.0 Yes Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.0411 -89.6861 651125801 1224821 333 36 458 67 SRX7891182 Unrestricted 22.66 Metagenome 2035265001 *Microbiome Permanent Draft Insect gut microbial communities from Hangzhou, China Acrididae gut microbial communities from Texas A and M University, USA - Sample 321 Texas A and M University 2035265001 Metagenome Analysis Velvet v. 1.0.4 released per Nikos No Yes syuan@tamu.edu Joshua S. Yuan, Joshua Yuan Yes 23326236 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Insect gut 30.166667 -120.116667 16328690 19210 108 0 163 0 0.0 Metagenome 3300041056 *Microbiome Permanent Draft Contaminated soil microbial communities from Humid Pampas, Chascomus Partido, Argentina Control soil microbial communities from Humid Pampas, Chascomus Partido, Argentina - L2_297 Illumina 3300041056 Metagenome Analysis Megahit v. 1.2.10 released by JGI data releasing policy No Yes valeria.imperato@uhasselt.be Valeria Imperato No Environmental Terrestrial Unclassified Soil Agricultural land Control soil -35.5787 -58.0138 20768960 47457 54 2 67 3 0.0 Metagenome 3300042182 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Marine sediment microbial communities from Algarve, Portugal - SD03 v2 Molecular Research LP (MR DNA) 3300042182 Metagenome Analysis Metawrap workflow v. 1.0.8 released by JGI data releasing policy Yes Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Environmental Aquatic Oceanic Marine Sediment marine sediment 36.979778 -7.989111 248680 342 4 2 3 2 0.0 Metagenome 3300003768 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_7/15/2010_ DNA DOE Joint Genome Institute (JGI) 3300003768 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 105949034 205503 125 12 220 20 SRX2714330 Unrestricted 0.0 Metagenome 3300001052 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN118 DOE Joint Genome Institute (JGI) 3300001052 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 39.23550963 -121.2836963 16931 50 7 3 18 4 SRX3311730 Unrestricted 0.0 Metagenome 3300002186 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Marine eukaryotic phytoplankton communities from the Norwegian Sea - 10m ARK-5M Metagenome DOE Joint Genome Institute (JGI) 3300002186 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 71.2008 8.8666 559495569 1333897 397 496 627 736 SRX2554359, SRX2554357, SRX2554358, SRX2554356 Unrestricted 0.0 Metagenome 3300021090 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo DOE Joint Genome Institute (JGI) 3300021090 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified groundwater sediment 38.9208 -106.9484 .65 1458780706 2886447 678 15 1108 24 SRX4020689 Unrestricted 16.33 Metagenome 3300053109 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere DOE Joint Genome Institute (JGI) 3300053109 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.587669 -123.193301 494771542 867119 154 97 265 170 Unrestricted 10.91 Metagenome 3300044670 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Estuarine water microbial communities from San Francisco Bay, California, United States - Dec19_SB_10_27D DOE Joint Genome Institute (JGI) 3300044670 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 37.6183 -122.2916 807007198 1300974 291 160 453 259 Unrestricted 29.03 Metagenome 3300056690 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.5W.11 SIP fraction DOE Joint Genome Institute (JGI) 3300056690 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 148162712 275396 203 16 316 28 Unrestricted 15.57 Metagenome 7000000148 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human subgingival plaque microbial communities from NIH, USA - visit 1, subject 763961826 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000148 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human 39.0042816 -77.1012173 88678518 176422 0 0 0 0 0.0 Metagenome 3300015253 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT590_16_10D DOE Joint Genome Institute (JGI) 3300015253 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9227 -106.9509 178159231 432787 354 28 726 47 SRX3780504 Unrestricted 4.79 Metagenome 3300013087 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L DOE Joint Genome Institute (JGI) 3300013087 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; sean.crowe@ubc.ca; jkjarett@lbl.gov Ramunas Stepanauskas; Sean Crowe; Jessica Jarett No Environmental Aquatic Lake Freshwater Unclassified freshwater -13.5167 34.7703 531732363 1145616 544 53 949 101 SRX3571179 Unrestricted 16.32 Metagenome 3300014096 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_210 The George Washington University (GWU) 3300014096 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 59032487 107054 57 2 97 3 SRX656257 0.0 Metagenome 3300043650 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 356-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043650 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9537 -107.0697 579033028 1539843 464 16 923 33 Unrestricted 7.49 Metagenome 3300040769 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Etang de Berre, Marignane, France - D171 Genopole Toulouse Midi-Pyrenees 3300040769 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.4847 5.188 231980867 470154 264 57 498 88 0.0 Metagenome 7000000535 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human subgingival plaque microbial communities from NIH, USA - visit 2, subject 763496533 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000535 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human 39.0042816 -77.1012173 64317967 135127 0 0 0 0 0.0 Metagenome 3300071016 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_043-M-20190619-COMP-DNA1 3300071016 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 390839 1344 9 0 16 0 0.0 Metagenome 3300057195 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2021-2015 DOE Joint Genome Institute (JGI) 3300057195 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.70406 -83.25291 433425387 931973 395 195 658 291 Unrestricted 13.04 Metagenome 3300022479 *Microbiome Permanent Draft Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain - individual 10 Autonomous University of Barcelona 3300022479 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.38 -0.51 14084879 17378 20 0 25 0 0.0 Metagenome 3300049766 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought DOE Joint Genome Institute (JGI) 3300049766 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 122837968 262667 280 18 531 41 Unrestricted 12.03 Metagenome 3300031185 *Microbiome Permanent Draft Testing DNA extraction from Arctic samples project reference metagenomes Permafrost active layer microbial community from Axel Heiberg Island, Nunavut, Canada - polygon interior 5cm, replicate 3 eDNA McGill University 3300031185 Metagenome Analysis Canu v. 1.7.1 released by JGI data releasing policy No Yes isabelle.raymond-bouchard@mail.mcgill.ca Isabelle Raymond-Bouchard No Environmental Terrestrial Unclassified Soil Permafrost Permafrost active layer 79.416111 -90.758333 283321 484 15 0 24 0 0.0 Metagenome 3300040787 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Etang de Berre, Marignane, France - D303 Genopole Toulouse Midi-Pyrenees 3300040787 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.4847 5.188 182130468 303944 115 9 205 13 0.0 Metagenome 3300038314 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_038 - TARA_R100000093 CEA Genoscope 3300038314 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 19.0351 64.5638 113753066 225046 32 0 44 0 0.0 Metagenome 3300006869 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA DOE Joint Genome Institute (JGI) 3300006869 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 944969006 2543713 648 249 1071 416 SRX2862380 Unrestricted 0.0 Metagenome 3300024923 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 51_LOW8 (SPAdes) DOE Joint Genome Institute (JGI) 3300024923 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 57767492 87361 19 0 36 0 SRX2720598 Unrestricted 0.0 Metagenome 3300041662 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Hand Lake #5 DOE Joint Genome Institute (JGI) 3300041662 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5511 78.3064 321566214 696011 124 44 177 81 SRX10085865 Unrestricted 19.77 Metagenome 3300017763 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 33 SPOT_SRF_2012-06-20 DOE Joint Genome Institute (JGI) 3300017763 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 396703525 906454 59 35 103 61 SRX7207414 Unrestricted 40.45 Metagenome 3300002637 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G05K2-12 DOE Joint Genome Institute (JGI) 3300002637 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 763698 2564 40 6 81 9 SRX1991292 Unrestricted 0.0 Metagenome 3300029124 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 180_M Beijing Genomics Institute (BGI) 3300029124 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 171917659 252590 175 0 290 0 ERX490976 0.0 Metagenome 3300024344 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300024344 Metagenome Analysis spades v. 3.11.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Volcanic Marine Unclassified Deep subsurface 36.5264 25.4868 889222769 1795399 492 63 783 90 SRX2524452 Unrestricted 0.0 Metagenome 3300009897 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S10 University of New South Wales 3300009897 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 36822250 65610 17 2 21 4 0.0 Metagenome 3300027825 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027825 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 51.62 -128.09 942212073 2058119 431 27 680 43 SRX2575206 Unrestricted 0.0 Metagenome 3300056884 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F1P_30_32 DOE Joint Genome Institute (JGI) 3300056884 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9544076 -81.67361068 1531528444 2341133 641 2 994 3 Unrestricted 12.88 Metagenome 3300048116 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_130109.NP1 DOE Joint Genome Institute (JGI) 3300048116 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 452865003 989464 339 47 520 89 Unrestricted 17.19 Metagenome 3300029503 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI003272-105 Beijing Genomics Institute (BGI) 3300029503 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 179378810 226571 135 0 203 0 0.0 Metagenome 3300025781 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH16Oct07 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025781 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 138541291 310758 93 14 139 29 SRX2565418 Unrestricted 0.0 Metagenome 3300009049 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1558A-02 DOE Joint Genome Institute (JGI) 3300009049 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2763 -124.0055 342752154 668599 365 14 555 30 SRX2753757 Unrestricted 0.0 Metagenome 3300045591 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_CSTR_036 DOE Joint Genome Institute (JGI) 3300045591 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 192750872 299643 221 1 292 2 SRX12654483 Unrestricted 74.97 Metagenome 3300022913 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_2_MG DOE Joint Genome Institute (JGI) 3300022913 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Inlet Marine Unclassified seawater 48.64 -123.5 469340894 1191475 723 102 1190 159 SRX4480132 Unrestricted 9.76 Metagenome 3300006997 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Final time point T34 (2) (live) benzoate enrichments of Methanogenic microbial communities using Athabasca oil sands as inoculum Shell Corporation 3300006997 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 38944387 63829 33 0 48 1 0.0 Metagenome 3300045309 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-485 Genome Quebec 3300045309 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 53.810107 -125.913779 1087041260 2451355 510 122 849 270 0.0 Metagenome 3300011617 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00355 Weill Cornell Medical College 3300011617 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.52 -40.52 25018504 41484 21 0 24 0 SRX822327 0.0 Metagenome 3300017622 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - F13-15 University of Michigan 3300017622 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.20619 -83.5666 11097508 14663 5 0 4 0 0.0 Metagenome 3300040368 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_035-O-20160803-COMP-DNA1 Battelle Memorial Institute 3300040368 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 6291224 18752 32 5 54 5 0.0 Metagenome 3300008466 *Microbiome Permanent Draft Marine sediment microbial communities from shallow-sea hydrothermal vent, Milos, Greece Marine sediment microbial communities from shallow-sea hydrothermal vent, Milos, Greece - WM7 National Aeronautics and Space Administration (NASA) 3300008466 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes janamend@usc.edu Jan Amend No Environmental Aquatic Hydrothermal vents Marine Sediment Marine sediment 36.674869 24.520916 4-7 13680492 29044 13 0 22 0 0.0 Metagenome 3300023267 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L197-509C-6 DOE Joint Genome Institute (JGI) 3300023267 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 520240616 1140856 496 141 911 220 SRX4801085 Unrestricted 7.65 Metagenome 3300011958 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00614 Weill Cornell Medical College 3300011958 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.81 -73.92 40181650 64290 18 0 27 0 SRX822581 0.0 Metagenome 3300040315 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_009-M-20140910-COMP-DNA1 Argonne National Laboratory 3300040315 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 5398202 16752 29 4 53 10 ERX2133952 0.0 Metagenome 3300013191 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100301 University of Pennsylvania 3300013191 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 32024321 61652 27 0 32 0 SRX756600 0.0 Metagenome 3300048507 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_120808.NP1 DOE Joint Genome Institute (JGI) 3300048507 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 707559079 1541838 399 72 639 125 Unrestricted 13.01 Metagenome 3300035310 *Microbiome Permanent Draft Freshwater microbial communities from subterranean cave lakes in Wind Cave and Jewel Cave, South Dakota, USA Freshwater microbial community from subterranean cave lake Piso Mojado in Jewel Cave National Monument, South Dakota, USA - LVC2018 Massachusetts Institute of Technology 3300035310 Metagenome Analysis metaSPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes ose1@zips.uakron.edu Olivia Hershey No Environmental Aquatic Subterranean lake Freshwater Unclassified Subterranean freshwater lake 43.730483 -103.827227 235723839 362795 217 3 343 0 0.0 Metagenome 3300027162 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Yuk_RepC_8d DOE Joint Genome Institute (JGI) 3300027162 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 175274017 364406 155 14 233 28 SRX5245440 Unrestricted 15.44 Metagenome 3300042853 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204 NMDC pilot DOE Joint Genome Institute (JGI) 3300042853 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92044255 -106.94881797 939295822 2548928 732 26 1438 56 SRX5355402 0.0 Metagenome 7000000467 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 159591683 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000467 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 93253 173 0 0 0 0 SRX022927, SRX022926 0.0 Metagenome 3300009987 *Microbiome Permanent Draft Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_213 metaG DOE Joint Genome Institute (JGI) 3300009987 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes esinger@lbl.gov; twoyke@lbl.gov Esther Singer; Tanja Woyke No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 30.387 -97.7301 40139895 87155 88 9 151 14 SRX3886466 Unrestricted 0.0 Metagenome 3300023289 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA -- CDI_193A University of California, Irvine 3300023289 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 68509110 69932 7 0 16 0 0.0 Metagenome 3300028177 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_120 DOE Joint Genome Institute (JGI) 3300028177 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified marine 48.6 -123.5 408634935 735188 278 6 399 5 SRX5244710 Unrestricted 31.61 Metagenome 3300001297 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - Naphthalene biodegradation metagenome 13C8doseA DOE Joint Genome Institute (JGI) 3300001297 Metagenome Analysis No Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.292222 -73.604444 721900 2579 5 3 8 2 Unrestricted 0.0 Metagenome 3300046095 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_8 DOE Joint Genome Institute (JGI) 3300046095 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 149055337 461821 404 22 756 32 Unrestricted 0.0 Metagenome 2013515002 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP13 Bechler Spring v1 DOE Joint Genome Institute (JGI) 2013515002 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23755042 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.286 -110.8785 18087467 27144 13 0 30 0 Unrestricted 0.0 Metagenome 3300054075 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin11_60_metaG re-annotation DOE Joint Genome Institute (JGI) 3300054075 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 658595744 1066009 227 1 344 1 SRX3293658 0.0 Metagenome 3300000966 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0145 DOE Joint Genome Institute (JGI) 3300000966 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 14.52 -26.0 15807645 37087 29 0 63 0 SRX1983335 Unrestricted 0.0 Metagenome 3300046703 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-C2 50-54 DOE Joint Genome Institute (JGI) 3300046703 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0434 618149588 958024 323 0 505 0 Restricted 13.32 Metagenome 3300014631 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00344 Weill Cornell Medical College 3300014631 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.7 -74.01 22504385 29412 8 0 10 0 SRX822317 0.0 Metagenome 3300069460 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_004-M-20160823-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069460 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 6269137 20229 31 6 48 13 0.0 Metagenome 7000000489 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 160704339 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000489 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2318875 2596 0 0 0 0 0.0 Metagenome 3300038521 *Microbiome Permanent Draft Organic and conventional farm associated microbial communities from Canada and USA Wastewater microbial communities from conventional feedlot in Alberta, Canada - WW123 Colorado State University 3300038521 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 50.34 -113.77 173508760 321545 226 0 382 0 0.0 Metagenome 3300027480 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027480 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 222376612 574459 342 31 610 67 SRX1985852, SRX2021670, SRX1985853 Unrestricted 0.0 Metagenome 3300044974 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Oct2016-rr0324 DOE Joint Genome Institute (JGI) 3300044974 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 807027599 1172677 347 97 501 134 Unrestricted 17.9 Metagenome 3300049173 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S40_B_D45 hydrophobic DOE Joint Genome Institute (JGI) 3300049173 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 331714684 487926 111 16 164 16 Unrestricted 45.95 Metagenome 3300001621 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF019 DOE Joint Genome Institute (JGI) 3300001621 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 1567620 5503 19 8 29 10 SRX2014343 Unrestricted 0.0 Metagenome 3300037819 *Microbiome Permanent Draft Bacterial communities from sewage treatment works near Birtley, UK Bioelectrochemical system biofilm bacterial communities from sewage treatment works near Birtley, UK - 26 Northumbria University 3300037819 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes martin.spurr@newcastle.ac.uk Martin Spurr No Engineered Bioreactor Unclassified Anaerobic Unclassified wastewater 54.903212 -1.595078 14530645 30745 65 0 111 0 0.0 Metagenome 3300030032 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36000 Beijing Genomics Institute (BGI) 3300030032 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 246332027 292400 175 0 264 0 0.0 Metagenome 3300037284 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site1_salt_MIII_3 DOE Joint Genome Institute (JGI) 3300037284 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Salt marsh microbial mat 20.7609 58.6478 405252292 769945 127 0 194 0 SRX9169868 Unrestricted 11.51 Metagenome 3300069251 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_049-M-20170621-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069251 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 31327346 95572 81 12 155 19 0.0 Metagenome 3300029818 *Microbiome Permanent Draft Groundwater microbial communities from Horonobe Underground Research Laboratory (URL), Japan Groundwater microbial communities from Horonobe Underground Research Laboratory (URL), Japan - horonobe_ig2699 University of California, Berkeley 3300029818 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Released because its Published Yes Yes Yes 28350393 Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 45.045278 141.859444 148821655 187485 67 0 86 0 0.0 Metagenome 3300050710 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water viral communities from Sandhills, Nebraska, United States - NSL_Island_2018_V DOE Joint Genome Institute (JGI) 3300050710 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.73473 -102.41005 352376408 929687 98 8 165 15 Unrestricted 86.62 Metagenome 3300041960 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS907_Anemone_DNA SE_2020 Marine Biological Laboratory 3300041960 Metagenome Analysis IDBA_UD v. 1.1.3 released by JGI data releasing policy No Yes cfortunato@gmail.com; randerson@carleton.edu; elks@mit.edu Caroline Fortunato; Rika Anderson; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933231 -130.013645 320566317 603070 323 31 554 66 0.0 Metagenome 7000000007 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159551223 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000007 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 130602022 241990 0 0 0 0 0.0 Metagenome 3300042591 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Coptotermes formosanus from BAM Federal Institute for Materials Research and Testing, Berlin, Germany - Cf509 Eurofins MWG Operon 3300042591 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 52.443245 13.287523 1084637653 1015241 116 19 148 35 0.0 Metagenome 3300022781 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY3 Version 2 University of New South Wales 3300022781 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 20577541 38224 15 0 25 1 0.0 Metagenome 3300017624 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - LE13-04 University of Michigan 3300017624 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.17991 -85.11844 12910915 15919 5 0 11 0 0.0 Metagenome 3300000565 *Microbiome Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Iowa, Native Prairie soil v5 (version 5) DOE Joint Genome Institute (JGI) 3300000565 Metagenome Analysis Artifact filter, partition at k=32, assemble with Velvet at k19-45, Minimus2 released based on JGI ITS No Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.0042816 -77.1012173 6.2 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300025913 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025913 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 3395306940 6928992 1285 139 2248 244 SRX3203322 Unrestricted 0.0 Metagenome 3300033169 *Microbiome Permanent Draft Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_18_07-R1 DOE Joint Genome Institute (JGI) 3300033169 Metagenome Analysis spades v. 3.13.0 Yes Yes ziels@mail.ubc.ca Ryan Ziels Yes 35477253 Engineered Bioreactor Unclassified Anaerobic Unclassified sludge 51.9691 5.6654 526856496 826242 470 0 642 0 SRX7542601 Unrestricted 40.43 Metagenome 3300042309 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Jul2001D7-rr0452 DOE Joint Genome Institute (JGI) 3300042309 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1291298672 2010301 481 51 638 83 Unrestricted 20.42 Metagenome 3300000359 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM204 Beijing Genomics Institute (BGI), Macrogen 3300000359 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 82498706 109514 361 0 557 0 0.0 Metagenome 3300049617 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Western Region, Iceland - Sphagnum magellanicum C3_MAG_ICE DOE Joint Genome Institute (JGI) 3300049617 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 2274863676 3020901 564 144 766 197 SRX14752523 Unrestricted 19.91 Metagenome 3300027164 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027164 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 151956175 399113 287 120 523 196 SRX1986006, SRX2021688, SRX1986007 Unrestricted 0.0 Metagenome 3300037151 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPON2-1-S DOE Joint Genome Institute (JGI) 3300037151 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3578 19.0528 819120759 1560566 217 32 420 57 SRX8167114 Unrestricted 8.42 Metagenome 3300019723 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLC_0-1_MG DOE Joint Genome Institute (JGI) 3300019723 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 115961740 282190 226 31 384 50 SRX3983486 Unrestricted 3.62 Metagenome 3300041040 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - T4D2 IDBA-UD 60x Baseclear 3300041040 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 92713910 133545 104 3 200 5 0.0 Metagenome 3300032310 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains Ecozone, Canada - Lake 08-144 Genome Quebec 3300032310 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.544714 -75.998585 641303704 1361088 300 71 554 134 0.0 Metagenome 3300000518 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 DOE Joint Genome Institute (JGI) 3300000518 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 3361323 11030 71 11 114 16 SRX2021671, SRX1986454, SRX1986453 0.0 Metagenome 3300028613 *Microbiome Permanent Draft Microbial communities from Yellowstone National Park hot springs 2017 Hot spring sediment microbial communities from Bison pool fringe, Yellowstone National Park, USA - 170627A University of Minnesota 3300028613 Metagenome Analysis SPAdes v. 3.11.0 released by JGI data releasing policy Yes Yes trinityh@umn.edu Trinity Hamilton No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.5697 -110.865 7.949 316999032 710899 205 6 356 5 0.0 Metagenome 3300044972 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME24May2018-rr0928 DOE Joint Genome Institute (JGI) 3300044972 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 713490300 1113183 241 32 307 48 Unrestricted 17.24 Metagenome 3300009648 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC125_MetaG DOE Joint Genome Institute (JGI) 3300009648 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 37.78 -122.42 511529296 941304 843 2 1314 0 SRX2338907 Unrestricted 0.0 Metagenome 3300053491 *Microbiome Permanent Draft Simulated microbial communities from Berkeley Lab, California, USA Simulated microbial communities from Berkeley Lab, California, USA - palsmid-contigs Lawrence Berkeley National Laboratory 3300053491 Metagenome Analysis Multiple v. 0 released per PI No Yes lcall@lbl.gov Lee Call No Engineered Modeled Unclassified Simulated communities (contig mixture) Unclassified Simulated 37.8774 -122.251 1000692929 1275392 2 0 0 1 0.0 Metagenome 3300030034 *Microbiome Permanent Draft Sewage treatment plant microbial communities from Vermont, USA Sewage treatment plant microbial communities from Vermont, USA - HR2_B Norwich University 3300030034 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes Yes 27610223 Engineered Wastewater Unclassified Industrial wastewater Unclassified Sewage treatment plant 43.727094 -72.425964 89060696 163721 66 3 102 4 SRX1058466 0.0 Metagenome 3300011173 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 20 - S13.2.70.2.a - transect 2, repeat2, age 2,000 years, surface depth) University of Bristol 3300011173 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes EAEloeFadrosh@lbl.gov; maisie.nash@bristol.ac.uk; ama@envs.au.dk Emiley Eloe-Fadrosh; Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 79.76833333 12.14361111 7.5 859271 2932 14 0 20 1 0.0 Metagenome 3300034196 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_18 DOE Joint Genome Institute (JGI) 3300034196 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9142 -147.835 932691485 2390875 850 12 1425 20 SRX7633908 Unrestricted 8.07 Metagenome 3300040547 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 035_R1_022417 University of Maryland 3300040547 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.19149722 24.926775 2648583 7776 27 0 30 0 0.0 Metagenome 3300046451 *Microbiome Permanent Draft Seawater and ice microbial communities from Arctic Ocean Seawater microbial communities from Arctic Ocean - MOSAiC PS122_424 DOE Joint Genome Institute (JGI) 3300046451 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Seawater 87.5953 94.0846 1154677693 1722331 368 231 490 288 Unrestricted 23.04 Metagenome 3300020733 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 12JUL2007 epilimnion DOE Joint Genome Institute (JGI) 3300020733 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 146453544 306397 95 15 162 42 Unrestricted 0.0 Metagenome 3300005186 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0927_05_40cm DOE Joint Genome Institute (JGI) 3300005186 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2940960973 8441686 2920 74 4968 131 SRX2520361 Unrestricted 0.0 Metagenome 3300000437 *Microbiome Draft Soil microbial communities from Kansas Great Prairie, USA, amended with BrdU Amended soil microbial communities from Kansas Great Prairies, USA - acetate DNA F2.3B clc assemly DOE Joint Genome Institute (JGI) 3300000437 Metagenome Analysis Clc-workbench released by JGI data releasing policy No Yes maude.david@yahoo.fr Maude David No Environmental Terrestrial Loam Soil Grasslands Soil 39.100992 -96.608258 650776161 2990662 199 19 546 58 0.0 Metagenome 3300050550 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf microbial communities from Olympic Peninsula, Washington, USA - D0_SEK2_2 DOE Joint Genome Institute (JGI) 3300050550 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Alder tree leaf 48.165 -124.245 311415807 391155 8 5 21 5 Unrestricted 47.34 Metagenome 3300013668 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100136 University of Pennsylvania 3300013668 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 11545019 21250 7 2 6 5 SRX756396 0.0 Metagenome 3300070276 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Alaska, USA - DEJU_009-O-20180619-COMP-DNA1 3300070276 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 32167000 98104 88 25 157 32 0.0 Metagenome 3300001054 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0104 DOE Joint Genome Institute (JGI) 3300001054 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 21.51 -23.45 22937310 57796 24 16 52 35 SRX1983452 Unrestricted 0.0 Metagenome 3300030213 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from colorectal cancer patient in Boston, USA - MG100126 University of Michigan 3300030213 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 42.36 -71.06 25486251 40752 36 0 69 0 0.0 Metagenome 3300012253 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00323 Weill Cornell Medical College 3300012253 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.79 -73.96 34902542 53243 21 0 26 0 SRX822296 0.0 Metagenome 3300037076 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 P1 30-34 DOE Joint Genome Institute (JGI) 3300037076 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0466 713448881 1242121 376 9 579 8 SRX8853670 Unrestricted 13.79 Metagenome 3300048035 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_150106.NP1 DOE Joint Genome Institute (JGI) 3300048035 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 478991139 998568 398 33 564 56 Unrestricted 23.44 Metagenome 3300021265 *Microbiome Permanent Draft Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States - Hobet_Shaw_3 DOE Joint Genome Institute (JGI) 3300021265 Metagenome Analysis spades v. 3.11.1-check Yes Yes zachary.freedman@mail.wvu.edu Zachary Freedman No Environmental Terrestrial Surface mine Soil Reclaimed soil 38.083 -81.98 16700167 46685 65 13 99 14 SRX4034661 Unrestricted 5.34 Metagenome 3300061119 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIIF2SW PMA-treated Jet Propulsion Laboratory, California Institute of Technology 3300061119 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 43935511 83856 7 7 10 10 SRX3808511, SRX3244870, SRX3244859, SRX3808504 0.0 Metagenome 3300029411 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 063_3_13_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029411 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 171049157 231156 207 0 301 0 0.0 Metagenome 3300013615 *Microbiome Permanent Draft Insectivorous bat viral communities from France Insectivorous bat viral communities from France - b7 Institut Pasteur, Paris, France 3300013615 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Multiple organs Multiple systems Pooled tissues Bat tissue 6570545 11756 5 3 8 7 SRX590193 0.0 Metagenome 3300029676 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 047_3_11_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029676 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 140114599 171922 194 0 279 0 0.0 Metagenome 3300025541 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-4-D (SPAdes) DOE Joint Genome Institute (JGI) 3300025541 Metagenome Analysis spades v. 3.11.1 Yes Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 197191093 409801 257 38 383 56 SRX2568352 Unrestricted 0.0 Metagenome 3300042708 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from Lilliput hydrothermal vent, Atlantic Ocean - BspSym_Li_3_10-5 Re-assembly Max Planck Institute for Marine Microbiology 3300042708 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills -9.5481672 -13.2088327 189210821 178551 7 3 8 4 ERX3367178 0.0 Metagenome 3300000758 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 23OCT2008 epilimnion DOE Joint Genome Institute (JGI) 3300000758 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300064893 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0689 Microbiome Insights 3300064893 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.33140284 -114.1207075 242054754 354860 85 2 137 9 0.0 Metagenome 3300025479 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 415-3 shallow-092012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025479 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 223226873 489250 179 25 318 25 SRX1987696 Unrestricted 0.0 Metagenome 3300017920 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in Ohio, USA - hydraulic fracturing test GB_TF_B DOE Joint Genome Institute (JGI) 3300017920 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Fracking water 40.178 -81.073 29941371 58356 282 0 740 1 SRX3937688 Unrestricted 370.75 Metagenome 3300011766 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00257 Weill Cornell Medical College 3300011766 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.68 -74.01 31108835 55695 20 0 25 0 SRX822231 0.0 Metagenome 3300038312 *Microbiome Permanent Draft Liquor fermentation pit mud microbial communities from Chongqing University, China Liquor fermentation pit mud microbial communities from Luzhou, China - Meta-1-3-440-T Chongqing University 3300038312 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Bioreactor Unclassified Unclassified Unclassified Fermentation pit mud 28.88 105.45 207833515 295292 173 0 259 0 SRX691265 0.0 Metagenome 3300026965 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - A23 P2 (SPAdes) DOE Joint Genome Institute (JGI) 3300026965 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 78980377 119429 63 0 71 0 SRX3311543 Unrestricted 0.0 Metagenome 3300041664 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_475 MetaG AgResearch, New Zealand, Mosgeil 3300041664 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1913287129 3910241 305 33 1137 44 0.0 Metagenome 3300026657 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN584 (SPAdes) DOE Joint Genome Institute (JGI) 3300026657 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.070856 -96.582821 605874 2220 4 0 7 0 SRX1986969 Unrestricted 0.0 Metagenome 3300003400 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM DOE Joint Genome Institute (JGI) 3300003400 Metagenome Analysis revert back to private per Christa Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 16150598 47399 162 6 321 8 SRX2574189 Unrestricted 0.0 Metagenome 3300071135 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_004-M-20180723-COMP-DNA1 3300071135 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 740231 2490 19 2 19 3 0.0 Metagenome 3300020679 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 13JUN2008 hypolimnion DOE Joint Genome Institute (JGI) 3300020679 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 31359678 66171 36 3 60 5 Unrestricted 0.0 Metagenome 3300007929 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 160502038 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007929 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 3004949 4235 2 0 6 0 0.0 Metagenome 3300056882 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E2L_20_22 DOE Joint Genome Institute (JGI) 3300056882 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9934494 -81.4907807 259652578 451013 194 3 350 4 Unrestricted 13.98 Metagenome 3300031339 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #48 DOE Joint Genome Institute (JGI) 3300031339 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.457 78.1911 375262840 802737 308 32 417 40 SRX5649318 Unrestricted 28.26 Metagenome 3300026045 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026045 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.052479 -121.7687 67027514 166292 151 1 298 1 SRX7181934 Unrestricted 0.0 Metagenome 3300013409 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100166 University of Pennsylvania 3300013409 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9460181 15472 20 0 29 1 SRX756366 0.0 Metagenome 3300051645 *Microbiome Permanent Draft Sediment microbial communities from various environments and locations in Europe Sediment microbial communities from Baltic Sea, Sweden - H5D5S (IMG v5.1) (version 2) DOE Joint Genome Institute (JGI) 3300051645 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes o.eyice@qmul.ac.uk Ozge Eyice No Environmental Aquatic Sediment Marine Unclassified Sediment 59.0386 17.7277 685617291 1624508 555 1 933 4 Unrestricted 0.0 Metagenome 3300026918 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN95 (SPAdes) DOE Joint Genome Institute (JGI) 3300026918 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Temperate forest Soil Unclassified Forest Soil 39.23550963 -121.2836963 16586232 52920 95 4 152 7 SRX3311734, SRX3311733 Unrestricted 0.0 Metagenome 3300029122 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019857-129 Beijing Genomics Institute (BGI) 3300029122 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 182586195 257905 188 0 253 0 0.0 Metagenome 3300039140 *Microbiome Permanent Draft Organic and conventional farm associated microbial communities from Canada and USA Wastewater microbial communities from Conventional dairy farm in Colorado, USA - WW28 Colorado State University 3300039140 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 40.7 -105.0 130362864 252122 184 2 343 2 0.0 Metagenome 3300059789 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059789 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.234 -123.9135 147806590 326111 204 23 297 38 SRX2753606 Unrestricted 0.0 Metagenome 7000000123 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 158944319 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000123 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 14370266 26247 0 0 0 0 0.0 Metagenome 3300030465 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from colorectal cancer patient in Houston, USA - MG100131 University of Michigan 3300030465 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 29.76 -95.37 36015361 58264 48 0 59 0 0.0 Metagenome 3300007663 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765701615 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007663 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 99690635 188407 129 0 202 1 0.0 Metagenome 3300003877 *Microbiome Permanent Draft Black smoker hydrothermal chimney microbial communities from Manus Basin, Bismarck Sea Black smoker hydrothermal chimney microbial communities from Manus Basin, Bismarck Sea - 373A_norm Max Planck Institute for Marine Microbiology 3300003877 Metagenome Analysis IDBA-UD/BBNorm released per JGI data release policy No Yes ppjevac@mpi-bremen.de, pjevac@microbial-ecology.net Petra Pjevac No Environmental Aquatic Hydrothermal vents Marine Black smokers Black smoker hydrothermal chimney 146170108 193464 118 10 173 14 0.0 Metagenome 3300021413 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - L1c1 DOE Joint Genome Institute (JGI) 3300021413 Metagenome Analysis spades v. 3.11.1-check Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.8924 -106.9111 192109721 380768 172 4 344 13 SRX3958803, SRX3958804 Unrestricted 0.0 Metagenome 3300001385 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 210-2 deep-092012 DOE Joint Genome Institute (JGI) 3300001385 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 116159710 244382 85 0 127 0 SRX1987665 Unrestricted 0.0 Metagenome 3300032019 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 21515 DOE Joint Genome Institute (JGI) 3300032019 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.7468 -122.0193 724612129 1650117 574 99 962 144 SRX6423770 Unrestricted 19.19 Metagenome 3300008114 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA University of Michigan 3300008114 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7635 -83.3309 8.835 547979219 909162 391 140 529 216 0.0 Metagenome 3300009764 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_19_40 DOE Joint Genome Institute (JGI) 3300009764 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 514369900 922773 280 6 462 8 SRX3005978 Unrestricted 0.0 Metagenome 3300000050 *Microbiome Permanent Draft Porifera Cymbastela concentrica microbial communities from Botany Bay near Bare Island, Sydney, Australia Porifera Cymbastela concentrica microbial communities from Botany Bay, Australia - sample 1 University of New South Wales 3300000050 Metagenome Analysis released per JGI data release policy No Yes t.thomas@unsw.edu.au Torsten Thomas Yes 20520651 Host-associated Porifera Unclassified Unclassified Unclassified Porifera Cymbastela concentrica -33.990833 151.23195 8.05 8515464 14956 3 2 6 1 0.0 Metagenome 3300042000 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z081617_5539 DOE Joint Genome Institute (JGI) 3300042000 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.201 -97.9447 169223146 477900 366 32 637 55 SRX14827145 Unrestricted 6.08 Metagenome 3300045251 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_1_F DOE Joint Genome Institute (JGI) 3300045251 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 121771143 144727 73 1 97 1 Unrestricted 144.89 Metagenome 3300030418 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from healthy individual in Boston, USA - MG100179 University of Michigan 3300030418 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 42.36 -71.06 50574637 93085 94 0 153 0 0.0 Metagenome 3300070747 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_043-O-20180731-COMP-DNA1 3300070747 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 7999833 23618 48 6 78 13 0.0 Metagenome 3300027307 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027307 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 166188609 453884 356 137 555 231 SRX3311922 Unrestricted 0.0 Metagenome 3300012458 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100746 University of Pennsylvania 3300012458 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 16123338 26266 9 4 19 7 SRX756104 0.0 Metagenome 3300038657 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Swamp Lake, Antarctica - #32 Australian Centre for Ecogenomics 3300038657 Metagenome Analysis Spades v. 3.13.0 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.622417 78.22545 580309705 1057792 194 59 329 85 0.0 Metagenome 3300024948 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 57_HOW8 (SPAdes) DOE Joint Genome Institute (JGI) 3300024948 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 67572481 117549 55 2 77 5 SRX2720609 Unrestricted 0.0 Metagenome 3300069591 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Barrow Environmental Observatory, Tundra, AK, USA - BARR_052-O-20170808-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069591 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 71.28241 -156.61936 9310011 27370 22 0 44 0 0.0 Metagenome 3300038965 *Microbiome Permanent Draft Freshwater sediment microbial communities from Alaska Lake sediment microbial communtites from St. Paul Island, Alaska - PH157_489 University of California, Santa Cruz 3300038965 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Sediment Lake sediment 57.18 -170.25 3321668 10884 9 0 12 0 0.0 Metagenome 3300026312 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0919_09_20cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026312 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 524438419 1037020 487 31 922 38 SRX2518975 Unrestricted 0.0 Metagenome 3300013582 *Microbiome Permanent Draft Insectivorous bat viral communities from France Insectivorous bat viral communities from France - b5 Institut Pasteur, Paris, France 3300013582 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Multiple organs Multiple systems Pooled tissues Bat tissue 2235350 6338 23 22 34 19 SRX590187 0.0 Metagenome 3300047053 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 soil DOE Joint Genome Institute (JGI) 3300047053 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.587688 -123.193613 6.9 204805814 377149 204 20 389 32 Unrestricted 24.11 Metagenome 3300044779 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - I_P72_A001 DOE Joint Genome Institute (JGI) 3300044779 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Pasture Soil Agricultural land Soil -10.163 -62.8363 557179483 1598378 537 14 927 15 Unrestricted 6.88 Metagenome 3300056799 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - APS1_3W_TP2_16O DOE Joint Genome Institute (JGI) 3300056799 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 1671954902 2283223 561 90 771 121 Unrestricted 25.03 Metagenome 3300059767 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1546B-3 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059767 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2311 -123.8825 122161107 281976 185 42 278 67 SRX2753620 Unrestricted 0.0 Metagenome 3300035665 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2014-rr0020 DOE Joint Genome Institute (JGI) 3300035665 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1358985856 2562732 619 162 1026 265 SRX8201787 Unrestricted 10.92 Metagenome 3300042184 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 DOE Joint Genome Institute (JGI) 3300042184 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.9457 -103.6985 260592749 672764 295 29 558 47 Unrestricted 8.01 Metagenome 3300045182 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_4_A DOE Joint Genome Institute (JGI) 3300045182 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 185963061 222142 125 1 127 1 Unrestricted 93.35 Metagenome 3300001557 *Microbiome Finished Human fecal microbial communities from the University of Tokyo, Japan, of healthy Japanese infants and adults Human fecal microbial communities from the University of Tokyo - healthy human sample F2-W, Adult, Female 3300001557 Metagenome Analysis PCAP released per Nikos No Yes hattori@k.u-tokyo.ac.jp Hattori M Yes 17916580 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 35.71 139.76 0 0 0 0 0 0 0.0 Metagenome 3300043759 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Para, Brazil - P23 DOE Joint Genome Institute (JGI) 3300043759 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -3.3138 -54.9097 485636299 1264217 333 3 673 11 Unrestricted 8.48 Metagenome 3300040660 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 057_R1_022417 University of Maryland 3300040660 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 61.00980556 25.67746389 1544481 4457 6 2 11 4 0.0 Metagenome 3300011354 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100469 University of Pennsylvania 3300011354 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 25179672 61395 27 1 38 3 SRX756529 0.0 Metagenome 3300011721 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00677 Weill Cornell Medical College 3300011721 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.98 32843108 50985 23 0 33 0 SRX822644 0.0 Metagenome 3300050018 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 P2 10-14 DOE Joint Genome Institute (JGI) 3300050018 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3535 19.0472 650666736 1004103 194 18 312 23 Restricted 11.8 Metagenome 3300071102 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_004-M-20200707-COMP-DNA1 3300071102 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 3669334 11778 27 3 52 6 0.0 Metagenome 3300003956 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Enrichment cultures from Harmful Algal Blooms in Lake Erie, HABS-00-39858 University of Michigan 3300003956 Metagenome Analysis IDBA-UD v1.1.1 released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lentic Freshwater Unclassified Freshwater -77.611214 163.119356 18526926 17968 5 0 4 0 0.0 Metagenome 3300049352 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MCF1 DOE Joint Genome Institute (JGI) 3300049352 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 209835111 593523 320 7 580 12 Unrestricted 6.81 Metagenome 3300012851 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - HID1975K_E1 MG DOE Joint Genome Institute (JGI) 3300012851 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 108250078 168850 123 0 143 0 SRX3564633 Unrestricted 0.0 Metagenome 3300021979 *Microbiome Permanent Draft Characterization of microbial community from Mariana Back Arc Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Hafa_FS926 _150kmer Marine Biological Laboratory 3300021979 Metagenome Analysis IDBA-UD 1.1.3 Trembath-Reichert et al. ?Active subseafloor microbial communities from Mariana back-arc venting fluids share metabolic strategies across different thermal niches and taxa?, ISMEJ 2019 No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Hydrothermal vent fluids 16.96131294 144.8678188 607031046 1220947 774 17 1135 26 0.0 Metagenome 3300041748 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_387 MetaG AgResearch, New Zealand, Mosgeil 3300041748 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1996800826 3794976 324 31 1335 33 0.0 Metagenome 3300034029 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 47SNC DOE Joint Genome Institute (JGI) 3300034029 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological biocrust 34.7856 -115.66 364172495 774949 475 11 802 32 SRX7621460 Unrestricted 10.17 Metagenome 3300048002 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_131030.NP2 DOE Joint Genome Institute (JGI) 3300048002 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 746083096 1628686 524 64 805 96 Unrestricted 13.11 Metagenome 3300043358 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 211-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043358 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.857 -107.0919 534477543 1453149 412 29 737 54 Unrestricted 7.26 Metagenome 3300033500 *Microbiome Permanent Draft Lab enriched peat soil microbial communities from two peatlands near Ithaca, NY, United States Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF7AN SIP fraction DOE Joint Genome Institute (JGI) 3300033500 Metagenome Analysis spades v. 3.13.0 Yes Yes rer26@cornell.edu Ruth Richardson No Environmental Terrestrial Wetlands Soil Peat peat soil 42.3286 -76.4792 223967854 506133 106 0 202 0 SRX6469118 Unrestricted 9.29 Metagenome 3300013744 *Microbiome Permanent Draft Oral microbial communities from fossilized dental plaque from Dalheim, Germany Oral microbial communities from fossilized dental plaque from Dalheim, Germany - S8-Shot-G12-calc University of Oklahoma 3300013744 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skeletonized remains Remains Dental calculus Fossilized dental plaque 51.565093 8.849015 60148504 152280 118 0 218 0 SRX340017 0.0 Metagenome 3300014288 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00191 Weill Cornell Medical College 3300014288 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.63 -73.99 16695303 37835 16 6 32 11 SRX822170 0.0 Metagenome 7000000504 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159611913 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000504 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 55485847 102962 0 0 0 0 0.0 Metagenome 3300020257 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000508 (ERX555911-ERR599048) CEA Genoscope 3300020257 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -8.7887 -17.9142 174398766 468722 172 38 375 49 0.0 Metagenome 3300043646 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 291-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043646 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.98 -107.0363 725235812 1974958 591 46 1062 90 Unrestricted 7.66 Metagenome 3300043519 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime ecozone, Canada - Lake 07-248 Genome Quebec 3300043519 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.522507 -61.560681 1092420624 2407143 441 164 765 304 0.0 Metagenome 3300005110 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage D2F10 DOE Joint Genome Institute (JGI) 3300005110 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 43957941 71355 56 0 70 0 SRX3195125 Unrestricted 0.0 Metagenome 3300001717 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-47 DOE Joint Genome Institute (JGI) 3300001717 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 50.0008 -145.0003 49253914 96926 28 0 50 0 Unrestricted 0.0 Metagenome 3300007722 *Microbiome Permanent Draft Freshwater microbial communities from lake liftoff mats and glacier meltwater in Antarctica Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (megahit assembly) DOE Joint Genome Institute (JGI) 3300007722 Metagenome Analysis MEGAHIT v.1.0.3 Yes Yes slonczewski@kenyon.edu Joan Slonczewski No Environmental Aquatic Ice Freshwater Glacier meltwater Freshwater -77.605 163.163 2082816759 3634996 499 251 769 413 SRX2753510 Unrestricted 24.4 Metagenome 3300026279 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026279 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 455366210 959071 450 3 687 5 SRX2782448 Unrestricted 0.0 Metagenome 3300044633 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME01Dec2017-rr0929 DOE Joint Genome Institute (JGI) 3300044633 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 991900276 1443892 263 43 306 53 Unrestricted 22.25 Metagenome 3300005865 *Microbiome Permanent Draft Synthestic metagenomes for simulated communities Synthestic metagenome for simulated communities - sample 1 Anand Agricultural University 3300005865 Metagenome Analysis assembly method released per JGI data release policy No Yes ssunil48@gmail.com Sunil Bhavsar No Engineered Modeled Unclassified Simulated communities (sequence read mixture) Unclassified Simulated communities 21.1539871 72.7889031 0 0 0 0 0 0 0.0 Metagenome 3300020448 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000941 (ERX555919-ERR598954) CEA Genoscope 3300020448 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -23.24 -129.4851 1295737896 3387198 631 65 1350 176 0.0 Metagenome 3300050209 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water microbial communities from Sandhills, Nebraska, United States - NSL_Smith_2019_MMG DOE Joint Genome Institute (JGI) 3300050209 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.78581 -102.52354 1841432989 2934845 663 41 978 56 Unrestricted 22.18 Metagenome 3300021300 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen10, Rep 3, Penicillin and Streptomycin DOE Joint Genome Institute (JGI) 3300021300 Metagenome Analysis spades v. 3.11.1-check Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4149 -119.841 144614818 151458 25 7 26 13 SRX4038388 Unrestricted 175.33 Metagenome 3300014306 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLB_D1 DOE Joint Genome Institute (JGI) 3300014306 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.224518 -122.019257 296467714 721173 363 6 703 8 SRX7187068 Unrestricted 0.0 Metagenome 3300005818 *Microbiome Permanent Draft Macropus eugenii forestomach microbial communities from Canberra, Australia Macropus eugenii forestomach microbial communities from Canberra, Australia - Macropus_eugenii_combined DOE Joint Genome Institute (JGI) 3300005818 Metagenome Analysis LUCY, PGA Assembler Yes Yes mark.morrison@csiro.au Mark Morrison Yes 20668243 Host-associated Mammals Stomach Digestive system Forestomach Macropus eugenii forestomach -35.310643 149.124184 52808473 98023 94 1 133 1 0.0 Metagenome 3300040553 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from LBJ National Grassland , Southern Plains, TX, USA - CLBJ_002-M-20170411-COMP-DNA1 Battelle Memorial Institute 3300040553 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 33.40123 -97.57 2610907 8759 25 0 50 3 0.0 Metagenome 2051223000 *Microbiome Permanent Draft Human fecal microbial communities from Orebro University Hospital, Sweden, of individuals with Crohns disease Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10368 University of Maryland School of Medicine 2051223000 Metagenome Analysis released per JGI data release policy No Yes cmfraser@som.umaryland.edu Claire Fraser No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 59.274717 15.230656 39595538 64309 0 0 0 0 0.0 Metagenome 3300013234 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100604 University of Pennsylvania 3300013234 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 53788634 102400 25 0 40 0 SRX756490 0.0 Metagenome 3300002503 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 DOE Joint Genome Institute (JGI) 3300002503 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.534762 -107.782602 561640519 1363975 1080 3 1908 12 SRX1991820 Unrestricted 0.0 Metagenome 3300037226 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 C-1-M DOE Joint Genome Institute (JGI) 3300037226 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3544 19.048 561978075 1110219 418 10 692 11 SRX8161299 Unrestricted 8.41 Metagenome 3300009913 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S1 University of New South Wales 3300009913 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes z5119396@unsw.edu.au; h.luter@aims.gov.au Hung Nguyen; Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 49235183 86811 20 4 26 8 0.0 Metagenome 3300028015 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Soil microbial communities from Maridalen valley, Oslo, Norway - NSE6 DOE Joint Genome Institute (JGI) 3300028015 Metagenome Analysis spades v. 3.11.1 Yes Yes baldrian@biomed.cas.cz; kostelecke.uzeniny@seznam.cz Petr Baldrian; Tomas Vetrovsky No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 59.997 10.7902 69949663 180385 97 23 189 33 SRX5272049 Unrestricted 8.05 Metagenome 3300048779 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 S3 1-5 DOE Joint Genome Institute (JGI) 3300048779 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.353292 19.0475 460771274 663397 138 8 217 18 Restricted 14.71 Metagenome 3300013561 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - seawater enrichment SCG51 University of British Columbia 3300013561 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 1727781 3512 2 0 1 0 SRX143160 0.0 Metagenome 3300025356 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Aug07 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025356 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 78860190 166819 57 21 87 29 SRX2565367 Unrestricted 0.0 Metagenome 3300027592 *Microbiome Permanent Draft Enrichment culture microbial communities from Rutgers university that are MTBE-degrading Enrichment culture microbial communities from Arthur Kill intertidal strait, New Jersey, USA, that are MTBE-degrading - MTBE-AKS1 (Arthur Kill Sulfidogenic replicate 1) MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027592 Metagenome Analysis spades v. 3.11.1 Yes Yes haggblom@rutgers.edu Max M. Haggblom No Environmental Aquatic Intertidal zone Marine Sediment Enrichment culture 40.58 -74.01 509018477 774083 243 0 326 0 SRX2782481 Unrestricted 0.0 Metagenome 3300034965 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_04D_17 DOE Joint Genome Institute (JGI) 3300034965 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9141 -147.834 546991599 1506157 716 15 1187 27 SRX7633859 Unrestricted 6.6 Metagenome 3300034657 *Microbiome Permanent Draft Extreme environments viral communities from various locations Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 513_2600 DOE Joint Genome Institute (JGI) 3300034657 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified filtered seawater 13.355 -44.909 29241938 52820 19 3 38 3 SRX7583413 Unrestricted 323.34 Metagenome 3300007550 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1549A-3 DOE Joint Genome Institute (JGI) 3300007550 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2322 -123.8817 296400304 574551 334 45 551 97 SRX2753719 Unrestricted 0.0 Metagenome 2124908037 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3 v1 (version 3) DOE Joint Genome Institute (JGI) 2124908037 Metagenome Analysis Velvet released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 22292634 34167 23 0 32 0 Unrestricted 0.0 Metagenome 3300006336 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500m University of Hawaii 3300006336 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Aphotic zone Marine 22.75 -158.0 638837708 1437936 793 60 1215 95 0.0 Metagenome 3300026320 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026320 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 27843720, 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 775335351 1350906 341 19 563 19 SRX2563717 Unrestricted 0.0 Metagenome 3300036760 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL18G_03-S DOE Joint Genome Institute (JGI) 3300036760 Metagenome Analysis metaspades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5106 -110.3566 2915796007 4350319 1157 1 1815 2 SRX8273765 Unrestricted 14.81 Metagenome 3300011683 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00271 Weill Cornell Medical College 3300011683 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.98 28456127 41540 29 0 32 0 SRX822244 0.0 Metagenome 3300045161 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_1_E DOE Joint Genome Institute (JGI) 3300045161 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 160678686 192377 99 1 117 1 Unrestricted 122.41 Metagenome 3300028068 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T75 DOE Joint Genome Institute (JGI) 3300028068 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 153077068 240246 65 12 83 14 SRX8128124, SRX8128123 Unrestricted 0.0 Metagenome 3300004241 *Microbiome Permanent Draft Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - High cellulose week 11 DOE Joint Genome Institute (JGI) 3300004241 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes rallen2@staffmail.ed.ac.uk Rosalind Allen No Environmental Aquatic Pond Freshwater Sediment Freshwater 55.9225 -3.1724 1140158812 2983294 1272 51 2700 89 SRX7158166 Unrestricted 0.0 Metagenome 3300025648 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09.1 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025648 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 419036985 793977 199 17 312 26 SRX2566717 Unrestricted 0.0 Metagenome 3300049431 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River, Colorado, USA - RiverWater_Long DOE Joint Genome Institute (JGI) 3300049431 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 261233565 714051 578 40 933 90 Restricted 13.33 Metagenome 3300037863 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Lake Cowan #31 DOE Joint Genome Institute (JGI) 3300037863 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5244 78.4083 210468205 361523 169 85 246 116 SRX9173468 Unrestricted 55.17 Metagenome 3300034045 *Microbiome Permanent Draft Deception Metagenome Fumarole sediment microbial communities from Fumarole Bay, Deception Island, Antarctica - FBB2 The Brazilian National Council for Scientific and Technological Development (CNPq) 3300034045 Metagenome Analysis IDBA-ud v. 1.1.1 released per Amanda Bendia -- GOLD-1013 No Yes amandagbendia@gmail.com Amanda Bendia No Environmental Aquatic Volcanic Marine Unclassified fumarole sediment -62.96 -60.71 119013599 149834 71 1 136 0 0.0 Metagenome 3300032208 *Microbiome Permanent Draft Microbial communities from various environments in Magnetic Island Reef, Townsville, Australia Seawater microbial communities from Magnetic Island Reef, Townsville, Australia - 36310 AGRF 3300032208 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes b.glasl@aims.gov.au Bettina Glasl No Environmental Aquatic Coastal Marine Unclassified Seawater -19.1531 146.8641 963964040 2243140 471 68 706 146 0.0 Metagenome 3300005676 *Microbiome Permanent Draft Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia Enhanced biological phosphorus removal bioreactor viral communities from the University of Queensland, Australia - SBR4-V90903 Phage Sequencing University of Queensland 3300005676 Metagenome Analysis CLC 6.0 Released per Connor Skennerton (Sep 15, 2015) No Yes c.skennerton@gmail.com Connor Skennerton No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor lab-scale EBPR bioreactor -27.49999 153.012098 23262446 49300 9 2 14 1 0.0 Metagenome 3300045099 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_7_D DOE Joint Genome Institute (JGI) 3300045099 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 176666512 228771 102 1 120 2 Unrestricted 95.42 Metagenome 3300026643 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN338 (SPAdes) DOE Joint Genome Institute (JGI) 3300026643 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 3260842 10870 36 4 67 7 SRX1986561 Unrestricted 0.0 Metagenome 3300009479 *Microbiome Permanent Draft Host-associated microbial communities of aphids from plants in several locations around USA Microbial communities of aphids from Triticum aestivum in Marana, AZ, USA - Sitobion avenae seqcov University of Texas, Austin 3300009479 Metagenome Analysis CLC Genomics released per JGI data release policy Yes Yes becky.chong@utexas.edu Rebecca Chong No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified wheat 32.436857 -111.228276 255311039 136313 1 1 1 1 0.0 Metagenome 3300008976 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T18 (1) (BES), Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2) Shell Corporation 3300008976 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, nicolas.tsesmetzis@shell.com; ianhead@ncl.ac.uk Ian Head, Nicolas Tsesmetzis; Ian Head No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 121482598 449421 193 5 322 4 0.0 Metagenome 3300029186 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021587-57 Beijing Genomics Institute (BGI) 3300029186 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 91364404 106312 70 0 95 0 0.0 Metagenome 3300008731 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 1, subject 764042746 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008731 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 8469984 14735 8 5 10 6 SRX024108 0.0 Metagenome 3300040713 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Ozarks Complex, AL, USA - LENO_004-M-20160830-COMP-DNA1 Battelle Memorial Institute 3300040713 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.85388 -88.16122 6267611 19758 43 0 66 0 0.0 Metagenome 3300020167 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L239-20m DOE Joint Genome Institute (JGI) 3300020167 Metagenome Analysis spades v. 3.10.1 Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.663 -93.723 523497799 1083960 369 64 576 126 SRX3984341 Unrestricted 20.94 Metagenome 3300056826 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - LS01-2021-023 DOE Joint Genome Institute (JGI) 3300056826 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 274254810 280471 92 10 103 6 Unrestricted 37.17 Metagenome 3300019470 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 1 Autonomous University of Barcelona 3300019470 Metagenome Analysis SPAdes 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 1661481 2992 0 0 1 0 0.0 Metagenome 3300010291 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment bacterial and archeal communities from California, USA to study Microbial Dark Matter (Phase II) - Blank Spring sediment metaG DOE Joint Genome Institute (JGI) 3300010291 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jkjarett@lbl.gov; rstepanauskas@bigelow.org Jessica Jarett; Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 39.0314 -122.4323 7.48 507999722 893655 519 3 789 5 SRX2526466 Unrestricted 0.0 Metagenome 3300002124 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_3 DOE Joint Genome Institute (JGI) 3300002124 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 694927644 1786976 1150 10 2063 22 SRX1990947 Unrestricted 0.0 Metagenome 3300012247 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01368 Weill Cornell Medical College 3300012247 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.66 -73.99 29118122 44170 17 0 22 0 SRX823308 0.0 Metagenome 3300045933 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P26SSC2_190918_i DOE Joint Genome Institute (JGI) 3300045933 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 688255296 1092331 216 0 347 0 SRX20650325 Unrestricted 11.98 Metagenome 3300022897 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L051-202B-4 DOE Joint Genome Institute (JGI) 3300022897 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 559439517 1224061 495 132 838 235 SRX4799635 Unrestricted 8.31 Metagenome 3300042698 *Microbiome Permanent Draft Soil microbial communities from Wonju, South Korea Soil microbial communities from Wonju, South Korea - Sample SP1 New assembly Macrogen Inc 3300042698 Metagenome Analysis MEGAHIT v. 2.4.2 released per request -- IMGSUPP-3417 No Yes mistiers2@gmail.com Jin-Kyung Hong No Environmental Terrestrial Unclassified Soil Unclassified Soil 37.277123 127.903091 220964266 261186 38 2 40 2 0.0 Metagenome 3300020189 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071401CT metaG (spades assembly) DOE Joint Genome Institute (JGI) 3300020189 Metagenome Analysis spades v. 3.10.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1027984467 1956502 490 40 705 64 SRX3920023 Unrestricted 25.58 Metagenome 3300013013 *Microbiome Permanent Draft Gypsum rock endolithic and hypoendolithic microbial communities Gypsum rock endolithic microbial communities from the Atacama Desert, Chile - Monturaqui Johns Hopkins Bayview Research CORES 3300013013 Metagenome Analysis metaSPAdes released by JGI data releasing policy Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock -23.57431 -68.10215 421190435 1128448 235 5 381 8 0.0 Metagenome 3300046305 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_46 DOE Joint Genome Institute (JGI) 3300046305 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9703 -106.997 120070373 286648 345 148 662 210 Restricted 0.0 Metagenome 3300048633 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from North Pacific Ocean - CTD009B DOE Joint Genome Institute (JGI) 3300048633 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 9.839 -104.2909 470391459 789070 246 48 368 59 Unrestricted 30.62 Metagenome 3300044464 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_21 DOE Joint Genome Institute (JGI) 3300044464 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 563302323 1295958 368 11 644 15 Unrestricted 8.07 Metagenome 3300000611 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 08JUL2008 hypolimnion DOE Joint Genome Institute (JGI) 3300000611 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300047544 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Hope, British Columbia, Canada - fraser_2019_sw_WHONDRS-S195_0001 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047544 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 49.3863 -121.4506 775849807 1134407 250 37 411 82 Unrestricted 0.0 Metagenome 3300060288 *Microbiome Permanent Draft Sediment microbial communities from the PNNL SFA Hanford 300 Area, Columbia River, WA, USA Sediment microbial communities from in situ POM Reactor at the PNNL SFA Hanford 300 Area, Columbia River, WA, USA - Deep Unashed with POM DOE Joint Genome Institute (JGI) 3300060288 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes eroden@geology.wisc.edu Eric Roden No Environmental Aquatic River Freshwater Sediment Sediment 46.467778 -119.464444 1588745711 2418602 630 76 722 124 Unrestricted 27.56 Metagenome 3300000476 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil ZC3D78 University of Sao Paulo 3300000476 Metagenome Analysis Newbler released per PI's request No Yes almsilva@iq.usp.br Aline Maria da Silva Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651079 -46.620668 19180390 39032 86 3 147 1 0.0 Metagenome 3300017719 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 13 SPOT_SRF_2010-07-21 DOE Joint Genome Institute (JGI) 3300017719 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 338676071 747774 33 48 48 81 SRX7207084, SRX7207085 Unrestricted 0.0 Metagenome 3300026196 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_D2_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026196 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Terrestrial Wetlands Soil Unclassified Soil 37.4965 -122.1329 423605485 872787 361 1 589 11 SRX2523926 Unrestricted 0.0 Metagenome 3300070237 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountains, Colorado, USA - RMNP_013-O-20200629-COMP-DNA1 3300070237 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 6970720 22613 76 9 137 23 0.0 Metagenome 2199352035 *Microbiome Draft Decomposing wood compost microbial communities from rain forest habitat in Puerto Rico, that are thermophilic Thermal compost microbial communities from rain forest in Puerto Rico DOE Joint Genome Institute (JGI) 2199352035 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS No Yes dmead@lucigen.com, dmead@varigenbio.com David Mead No Engineered Solid waste Composting Wood Bioreactor Decomposing wood 18.316667 -65.75 51405246 71460 47 0 59 0 Unrestricted 0.0 Metagenome 3300035324 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Marine sediment microbial communities from Algarve, Portugal - SD02 Euk Molecular Research LP (MR DNA) 3300035324 Metagenome Analysis Metawrap workflow v. 1.0.5 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Environmental Aquatic Oceanic Marine Sediment marine sediment 36.979778 -7.989111 242103 222 0 2 0 2 0.0 Metagenome 3300025764 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-312 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025764 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.28381 -156.5985 623259383 1220003 299 2 522 3 SRX1990915 Unrestricted 0.0 Metagenome 2044078004 *Microbiome Permanent Draft Switchgrass, Maize and Miscanthus rhizosphere microbial communities from University of Illinois Energy Farm, Urbana, IL Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL University of Illinois, Urbana-Champaign 2044078004 Metagenome Analysis No Yes lixz@illinois.edu Xiangzhen Li No Host-associated Plants Rhizosphere Roots Soil Switchgrass, Maize and Miscanthus rhizosphere 40.109722 -88.204167 27453735 79586 36 0 80 0 0.0 Metagenome 3300022762 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S13 Version 2 University of New South Wales 3300022762 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes z5119396@unsw.edu.au; h.luter@aims.gov.au Hung Nguyen; Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Microbial -18.833 147.683 8.1 36968265 66351 17 8 16 20 0.0 Metagenome 3300022340 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Lake Vincent, Rottnest Island (WA - Australia) - LVBGP2 JM32 AGRF 3300022340 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.999838 115.51448 32755130 63084 32 0 66 1 0.0 Metagenome 3300032322 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains Ecozone, Canada - Lake 08-189 Genome Quebec 3300032322 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.167631 -81.310244 738122889 1453694 382 44 555 85 0.0 Metagenome 3300038643 *Microbiome Permanent Draft Seawater archaeal communities from North Pacific Subtropical Gyre, Pacific Ocean Seawater archaeal communities from North Pacific Subtropical Gyre, Pacific Ocean - 131_0_3 Massachusetts Institute of Technology 3300038643 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Seawater 25.0335 -157.3334 13918558 34052 32 4 54 7 0.0 Metagenome 3300037534 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18B_2_15_6 mgh University of Alberta 3300037534 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 68031993 85898 18 1 35 1 0.0 Metagenome 3300035063 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - T5-7 Autonomous University of Barcelona 3300035063 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 83497777 341830 903 1 1543 0 0.0 Metagenome 3300040472 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 036_R1_022417 University of Maryland 3300040472 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.20158611 24.85868611 4099315 13332 42 10 74 16 0.0 Metagenome 3300047655 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BT11-07_D100 (version 2) DOE Joint Genome Institute (JGI) 3300047655 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3555 19.0492 209849782 330615 111 30 162 36 Restricted 0.0 Metagenome 3300004006 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragA_D2 DOE Joint Genome Institute (JGI) 3300004006 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.080353 -122.108833 726294395 2090483 859 8 1833 16 SRX7225230 Unrestricted 0.0 Metagenome 3300056609 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.16W.12 SIP fraction DOE Joint Genome Institute (JGI) 3300056609 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 155958575 303525 129 40 244 64 Unrestricted 8.99 Metagenome 3300007018 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Final time point T65 (1) (BES) benzoate enrichments of Methanogenic microbial communities using Athabasca oil sands as inoculum Shell Corporation 3300007018 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 38844392 66915 42 2 70 4 0.0 Metagenome 3300026029 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026029 Metagenome Analysis spades v. 3.11.1 released Yes Yes jzz0026@lbl.gov; sgtringe@lbl.gov Jinglie Zhou; Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.052479 -121.7687 65028317 163478 126 0 264 0 SRX7181209 Unrestricted 0.0 Metagenome 3300037450 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_100m_C4_0cm5cm DOE Joint Genome Institute (JGI) 3300037450 Metagenome Analysis metaspades v. 3.13.0 Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 37.1343 -121.4557 1290204649 2085766 345 16 583 17 SRX9141054 Unrestricted 16.26 Metagenome 3300007945 *Microbiome Permanent Draft Comparative analysis of microbial communities from hot springs Hot spring water microbial communities from Unkeshwar, Maharashtra, India Genotypic Technology 3300007945 Metagenome Analysis Velvet released per JGI data release policy No Yes paranjpeaditi@gmail.com Aditi Paranjpe No Environmental Aquatic Warm (34-42C) Thermal springs Unclassified water 19.8559 78.2498 3694573 20551 8 1 16 5 0.0 Metagenome 3300070941 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_001-M-20180710-COMP-DNA1 3300070941 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 183680 651 4 2 7 2 0.0 Metagenome 3300018483 *Microbiome Permanent Draft Bovine feces microbial communities from beef and dairy calves in Davis, CA, USA Bovine feces microbial communities from dairy calf in Davis, CA, USA - DMJL001C re-assembly QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018483 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes jxnliu@ucdavis.edu Jinxin Liu No Host-associated Mammals Large intestine Digestive system Fecal feces 38.5449 -121.7405 22470692 39090 50 0 90 0 0.0 Metagenome 3300012931 *Microbiome Permanent Draft Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG DOE Joint Genome Institute (JGI) 3300012931 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes christopher.s.miller@ucdenver.edu Christopher S. Miller Yes 29146959 Environmental Aquatic Wetlands Freshwater Unclassified freshwater wetlands 41.3778 -82.5108 5336785317 11262254 3467 13 5922 24 SRX3527544 Unrestricted 0.0 Metagenome 3300070753 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Marvin Klemme Range Research Station, Oklahoma, USA - OAES_043-M-20180530-COMP-DNA1 3300070753 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 37429366 110329 77 5 148 5 0.0 Metagenome 3300034279 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2014-rr0163 DOE Joint Genome Institute (JGI) 3300034279 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1222831704 2495039 569 50 870 96 SRX7622337 Unrestricted 11.93 Metagenome 3300042674 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A49 University of California, Davis 3300042674 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 310816651 842852 395 7 715 8 0.0 Metagenome 3300007065 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159207311 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007065 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 44978358 75377 36 1 38 1 0.0 Metagenome 3300037261 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 711 P-1-D DOE Joint Genome Institute (JGI) 3300037261 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0473 678810884 1332402 286 3 528 1 SRX8145075 Unrestricted 17.87 Metagenome 3300027254 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1561A-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027254 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2637 -123.4651 167362245 335983 148 65 250 104 SRX2753752 Unrestricted 0.0 Metagenome 3300039441 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02 v2 DOE Joint Genome Institute (JGI) 3300039441 Metagenome Analysis MEGAHIT v. 1.2.7 Released on PI's request No Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Environmental Terrestrial Grasslands Soil Bulk soil bulk soil -19.28 -43.5919 1672832387 2931906 1202 49 2368 91 SRX4020418 0.0 Metagenome 3300031248 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5 DOE Joint Genome Institute (JGI) 3300031248 Metagenome Analysis spades v. 3.12.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sandy soil 49.2598372 -123.2459363 433681926 1117470 645 19 1255 41 SRX5338656 Unrestricted 8.42 Metagenome 3300035511 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver proximal colon microbial communities from Maple Ridge, British Columbia, Canada - Beaver4Prox.Colon1 DOE Joint Genome Institute (JGI) 3300035511 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Proximal colon proximal colon 49.18 -122.54 622987544 1106169 995 23 1411 33 SRX8346076 Unrestricted 15.16 Metagenome 3300046332 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_106 DOE Joint Genome Institute (JGI) 3300046332 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9802 -106.9905 271853495 696404 1007 18 1939 37 Restricted 0.0 Metagenome 3300052795 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_CO_018D DOE Joint Genome Institute (JGI) 3300052795 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0554 10.44765 539486090 1399414 437 53 825 89 Unrestricted 9.98 Metagenome 3300001911 *Microbiome Permanent Draft Enriched soil microbial communities from the University of Wisconsin-Madison, USA, enriched with a pyrite oxidizing culture Enriched soil microbial communities from the University of Wisconsin-Madison, USA, enriched with a pyrite oxidizing culture - Culture 26: Neutral pH aerobic pyrite oxidizer 3300001911 Metagenome Analysis released by JGI data releasing policy Yes Yes Eric Roden; Shaomei He No Environmental Terrestrial Sediment Geologic Pyrite containing Enriched soil 46.547528 -119.521866 26441674 37860 24 2 12 2 0.0 Metagenome 3300007786 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human attached/keratinized gingiva microbial communities from NIH, USA - visit 1, subject 763961826 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007786 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Attached/Keratinized gingiva Human 39.0042816 -77.1012173 20638031 27496 13 0 12 0 0.0 Metagenome 3300003101 *Microbiome Permanent Draft Sea squirt microbial communities from various locations Lissoclinum patella microbial communities from the Solomon Islands - P3 3300003101 Metagenome Analysis Celera assembler v. July 2009 Made public because these are downloaded from Genbank No Yes ews1@utah.edu Eric Schmidt Yes 22123943 Host-associated Tunicates Unclassified Ascidians Unclassified Sea squirt -8.384952 158.846815 7034884 10081 6 1 8 2 0.0 Metagenome 3300042970 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TS32 (downsampled for mapping) DOE Joint Genome Institute (JGI) 3300042970 Metagenome Analysis metaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.4139 54486058 54442 82 2 82 1 SRX12729177, SRX12729176, SRX12729178 Unrestricted 0.0 Metagenome 3300030395 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine giant viral communities collected during Tara Oceans survey from station TARA_039 - TARA_Y100000033 CEA Genoscope 3300030395 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine 18.5918 66.622 168086310 399714 19 2 45 4 0.0 Metagenome 3300020304 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000787 (ERX556110-ERR599176) CEA Genoscope 3300020304 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -62.1363 -49.3331 158404517 385390 88 39 138 81 0.0 Metagenome 3300020243 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000953 (ERX556050-ERR599055) CEA Genoscope 3300020243 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -5.2771 -85.2995 115701133 273837 155 8 244 17 0.0 Metagenome 3300045390 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-483 Genome Quebec 3300045390 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 54.186152 -125.428674 1206731279 2654481 596 186 1001 312 0.0 Metagenome 3300055463 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.4W.10 SIP fraction DOE Joint Genome Institute (JGI) 3300055463 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 129010848 231053 178 15 252 17 Unrestricted 14.36 Metagenome 3300006144 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t14_690M_inflammed - microbial_metagenome University of Texas Southwestern Medical Center 3300006144 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 186121406 334951 190 0 218 1 0.0 Metagenome 3300006211 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - GF2 control_feces - viral_metagenome University of Texas Southwestern Medical Center 3300006211 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 781058 2540 2 0 6 2 0.0 Metagenome 3300023485 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_143C University of California, Irvine 3300023485 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 88984957 85584 9 0 12 0 0.0 Metagenome 3300003313 *Microbiome Permanent Draft Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil, in a copper mine Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P3 sample University of Campinas 3300003313 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes danba.castro@gmail.com Daniel Castro No Environmental Terrestrial Unclassified Soil Unclassified Ore pile and mine drainage contaminated soil -6.426389 -50.051389 264633630 395017 129 0 201 1 0.0 Metagenome 3300012163 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT800_2 DOE Joint Genome Institute (JGI) 3300012163 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9231 -106.9521 191643751 439935 247 27 535 32 SRX3369025 Unrestricted 0.0 Metagenome 3300011207 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00204 Weill Cornell Medical College 3300011207 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.57 -73.98 27088257 47186 21 0 24 0 SRX822183 0.0 Metagenome 3300029110 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 103_B Beijing Genomics Institute (BGI) 3300029110 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 46221134 46824 24 1 30 2 ERX490926 0.0 Metagenome 3300041433 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass leaf microbial community from Lincoln, Canterbury, New Zealand - RGL18_10 MetaG AgResearch, New Zealand, Mosgeil 3300041433 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 576489140 914032 87 893 224 876 0.0 Metagenome 3300036948 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - SCT 32 I DOE Joint Genome Institute (JGI) 3300036948 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 683463975 1453294 715 178 1046 247 SRX8359894 Unrestricted 9.01 Metagenome 7000000285 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159005010 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000285 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 198125826 390735 0 0 0 0 0.0 Metagenome 3300038320 *Microbiome Permanent Draft Activated sludge microbial communities from nutrient removal reactor in Madison, Wisconsin, USA Activated sludge microbial communities from nutrient removal reactor in Madison, Wisconsin, USA - LS-SBR_LowDO_D671 University of Wisconsin 3300038320 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 30944872 Engineered Wastewater Unclassified Nutrient removal Unclassified Activated sludge 43.07 -89.4 106016776 155036 47 2 79 4 0.0 Metagenome 3300011927 *Microbiome Permanent Draft Aquatic microbial communities from drinking water treatment system in Nanjing, China Aquatic microbial communities from drinking water treatment system in Nanjing, China - Tap water - TW Nanjing University 3300011927 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Drinking water Freshwater Unclassified Aquatic 65505121 139446 28 4 52 12 SRX130437 0.0 Metagenome 3300070513 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_046-M-20190311-COMP-DNA1 Battelle Memorial Institute 3300070513 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 37.111276 -119.728168 6.12-6.49 3097426 9080 10 0 19 0 0.0 Metagenome 3300017912 *Microbiome Permanent Draft Marine microbial communities from Caribbean coral reef seawater Marine microbial communities from Caribbean coral reef seawater, Cuba - site E University of Illinois, Urbana-Champaign 3300017912 Metagenome Analysis MEGAHIT v1.1.1-2-g02102e1 released by JGI data releasing policy No Yes lweber@whoi.edu Laura Weber No Environmental Aquatic Intertidal zone Marine Coral reef seawater 21.09232 -78.73354 260396265 375721 88 19 95 15 0.0 Metagenome 3300028342 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #81 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028342 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 56143776 89382 24 1 27 1 SRX3241666 Unrestricted 0.0 Metagenome 3300057050 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F2P_18_20 DOE Joint Genome Institute (JGI) 3300057050 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.97683846 -81.7074257 1644304496 2506640 749 1 1138 1 Unrestricted 13.12 Metagenome 3300028399 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in the Atlantic and Pacific Ocean Hydrothermal vent microbial communities from Lau Basin, Pacific Ocean - 128-326 DOE Joint Genome Institute (JGI) 3300028399 Metagenome Analysis spades v. 3.11.1 Yes Yes pgirguis@oeb.harvard.edu Peter Girguis No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent -20.761 -176.1909 512596221 922795 367 10 525 16 SRX5246451 Unrestricted 22.95 Metagenome 3300011145 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01010 Weill Cornell Medical College 3300011145 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.58 -73.82 32325895 43874 12 0 21 0 SRX822972 0.0 Metagenome 3300044470 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Soil microbial communities from peatland in Alberta, Canada - SB-12-sedgy 40-50 cm DOE Joint Genome Institute (JGI) 3300044470 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4549 -114.8842 429151136 573509 111 1 178 1 Unrestricted 32.59 Metagenome 3300027984 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Cubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027984 Metagenome Analysis spades v. 3.11.1 Yes Yes brune@mpi-marburg.mpg.de Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 0.2917 34.856 1869771769 2465217 514 20 857 22 SRX3315527 Unrestricted 0.0 Metagenome 3300046363 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_16 DOE Joint Genome Institute (JGI) 3300046363 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9223 -106.9493 79573199 217750 467 81 918 115 Restricted 0.0 Metagenome 3300011538 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00451 Weill Cornell Medical College 3300011538 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -73.8 11758297 15790 9 0 21 0 SRX822420 0.0 Metagenome 3300033989 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 20HNC DOE Joint Genome Institute (JGI) 3300033989 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological hypolithic biocrust 34.7856 -115.66 129159367 339449 366 21 675 47 SRX7618053 Unrestricted 8.35 Metagenome 3300013008 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_host_9_15 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300013008 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jim.fredrickson@pnnl.gov; binskeep@montana.edu Jim Fredrickson; William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.733 -110.709 3 153007315 395655 105 0 213 0 SRX2939926 Unrestricted 0.0 Metagenome 3300025597 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC113_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025597 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 22.28 114.17 358287752 633817 356 11 489 13 SRX2164574 Unrestricted 0.0 Metagenome 3300009335 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 198m, 2.7-0.2um, replicate a Georgia Genomics Facility 3300009335 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 386612276 518550 229 7 296 12 0.0 Metagenome 3300045787 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - CP-10B DOE Joint Genome Institute (JGI) 3300045787 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.0477 428382190 835783 173 7 282 9 Unrestricted 7.87 Metagenome 3300071071 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_049-M-20200721-COMP-DNA1 3300071071 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 2825580 9405 25 7 40 8 0.0 Metagenome 3300043450 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Columbia River, Richland, Washington, USA - columbiariver2_2019_sw_WHONDRS-S19S_0076 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043450 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 46.6793 -119.4626 580706734 974246 259 94 341 129 Unrestricted 20.02 Metagenome 3300022679 *Microbiome Permanent Draft Carpinteria Salt Marsh Metagenomes 2014 to 2017 Marine microbialite microbial communities from marsh intertidal zone in Carpinteria, CA, United States - B3 University of California, Irvine 3300022679 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Aquatic Intertidal zone Marine Microbialites Microbialites 34.401 -119.534 42170263 48229 11 4 16 2 0.0 Metagenome 3300001828 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM3, ROCA_DNA076_2.0um_10f 3300001828 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River plume Marine Plankton Marine plankton 4.8818 -51.3608 52708118 97325 39 12 57 20 0.0 Metagenome 3300012132 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Georgia, USA - TSGA062 MetaG DOE Joint Genome Institute (JGI) 3300012132 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 33.0837 -81.7714 129460864 239266 78 585 106 1097 SRX3539656 Unrestricted 0.0 Metagenome 3300051225 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_SEK1_1_to_RHK1 DOE Joint Genome Institute (JGI) 3300051225 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.154 -124.211 590001695 1066464 424 129 667 213 Unrestricted 21.61 Metagenome 3300045769 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - P2-R2-B DOE Joint Genome Institute (JGI) 3300045769 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.357 19.047 398590540 860162 221 39 375 61 Unrestricted 7.21 Metagenome 3300002758 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-E DOE Joint Genome Institute (JGI) 3300002758 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.33 627197 2105 16 7 43 15 SRX1991443 Unrestricted 0.0 Metagenome 3300041462 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_8 MetaG AgResearch, New Zealand, Mosgeil 3300041462 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Rhizoplane Roots Dairy farm pasture -43.648506 172.343549 684618873 1083692 103 175 267 145 0.0 Metagenome 3300053115 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 endosphere DOE Joint Genome Institute (JGI) 3300053115 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121345 -123.270991 475259783 600098 109 140 132 156 Unrestricted 0.0 Metagenome 3300025078 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025078 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -16.21 -76.61 195834662 483365 27 0 37 0 SRX2929232 Unrestricted 0.0 Metagenome 3300002437 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP19-I1 3300002437 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300053168 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S53_A_D89 hydrophobic DOE Joint Genome Institute (JGI) 3300053168 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 530824973 795026 275 1 359 2 Restricted 0.0 Metagenome 3300033047 *Microbiome Permanent Draft Characterization of microbial community from North Pond CORK fluids Aquifer fluid microbial communities from North Pond CORKs, Mid-Atlantic Ridge, Atlantic Ocean - Hole 1382A Marine Biological Laboratory 3300033047 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Aquatic Oceanic Marine Oceanic crust Aquifer fluid 22.78 -46.09 196703162 275184 140 10 219 7 0.0 Metagenome 3300014838 *Microbiome Permanent Draft Permafrost microbial communities from Stordalen Mire, Sweden Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300014838 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rich.270@osu.edu Virginia Rich Yes 30013118 Environmental Terrestrial Wetlands Soil Permafrost Bog 68.35 19.05 3400884350 5864298 1667 52 2756 103 SRX3903278, SRX3903277, SRX3903279, SRX3903281, SRX3903280, SRX3903283, SRX3903282, SRX3903284 Unrestricted 14.28 Metagenome 3300032213 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada - Lake 06-136 Genome Quebec 3300032213 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.720459 -75.437217 536847173 1100794 272 47 455 94 0.0 Metagenome 3300043534 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield ecozone, Canada - Lake 06-259 Genome Quebec 3300043534 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 47.623501 -52.825599 663111457 1526115 265 54 387 79 0.0 Metagenome 3300026073 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_250_ad_252m_LV_B (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026073 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -0.015038 -22.962334 316160314 779403 351 30 724 29 SRX2719401 Unrestricted 0.0 Metagenome 3300032034 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060911_MSe2 DOE Joint Genome Institute (JGI) 3300032034 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 306668012 627606 204 0 299 0 SRX6411435 Unrestricted 190.19 Metagenome 3300064931 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 739 in Chauvin, Alberta, Canada - S00JY_0651 Microbiome Insights 3300064931 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.4340656 -110.170687 8163124 11743 17 0 36 0 0.0 Metagenome 3300003902 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring water microbial communities from Wilbur Hot Springs, California, USA - Wilbur Geyser tube - 6/17/14 DOE Joint Genome Institute (JGI) 3300003902 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes rstepanauskas@bigelow.org, rstepanauskas@bigelow.org; jkjarett@lbl.gov Ramunas Stepanauskas, Ramunas Stepanauskas; Jessica Jarett No Environmental Aquatic Unclassified Thermal springs Unclassified Hot spring water 39.039162 -122.42147 7.98 22469760 42155 31 0 50 0 Unrestricted 0.0 Metagenome 3300003444 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 m-RNA DAY 30 University of Sao Paulo, Virginia Bioinformatics Institute 3300003444 Metagenome Analysis SoapDeNovo released per JGI data release policy No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 33065705 81632 18 40 57 144 0.0 Metagenome 3300049306 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA16 DOE Joint Genome Institute (JGI) 3300049306 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 604939400 1334843 420 3 736 4 Unrestricted 8.3 Metagenome 3300035032 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - T8-7 Autonomous University of Barcelona 3300035032 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 81195505 330883 648 0 1222 1 0.0 Metagenome 3300042547 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME10Aug2016-rr0692 DOE Joint Genome Institute (JGI) 3300042547 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 941220301 1422464 365 64 527 80 Unrestricted 13.98 Metagenome 3300036774 *Microbiome Permanent Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - WEM-1_at_6-7_cm Genome Quebec 3300036774 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89896 -73.80984 1227456894 3029790 910 15 2169 19 0.0 Metagenome 3300008139 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human subgingival plaque microbial communities from NIH, USA - visit 2, subject 763961826 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008139 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human 39.0042816 -77.1012173 195881775 349108 165 3 255 2 0.0 Metagenome 3300022733 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Soil microbial communities from Bohemian Forest, Czech Republic - CSU3 DOE Joint Genome Institute (JGI) 3300022733 Metagenome Analysis spades v. 3.11.1-check Yes Yes baldrian@biomed.cas.cz; kostelecke.uzeniny@seznam.cz Petr Baldrian; Tomas Vetrovsky No Environmental Terrestrial Temperate forest Soil Unclassified soil 49.0431 13.617 49924398 127525 75 14 136 22 SRX4456296 Unrestricted 7.72 Metagenome 3300017422 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12SEP2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017422 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 208121115 407788 118 195 191 323 SRX3926424 Unrestricted 6.32 Metagenome 3300011417 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT500_2 DOE Joint Genome Institute (JGI) 3300011417 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8896 -106.9085 290563125 642624 264 16 573 32 SRX3368485 Unrestricted 0.0 Metagenome 3300031566 *Microbiome Permanent Draft Soil microbial communities from Risofladan, Vaasa, Finland Soil microbial communities from Risofladan, Vaasa, Finland - UN-1 DOE Joint Genome Institute (JGI) 3300031566 Metagenome Analysis spades v. 3.12.0 Yes Yes eva.hogfors-ronnholm@novia.fi Eva Hogfors-Ronnholm Yes Environmental Terrestrial Coastal area Soil Acid sulfate soil soil 63.0472 21.7116 2999746662 6287774 896 22 1402 25 SRX5356289 Unrestricted 19.97 Metagenome 3300003222 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO21-C DOE Joint Genome Institute (JGI) 3300003222 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 490928 1618 13 4 27 5 SRX2575533 Unrestricted 0.0 Metagenome 3300028798 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2 DOE Joint Genome Institute (JGI) 3300028798 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 935699039 2112960 451 113 734 168 SRX5355862 Unrestricted 0.0 Metagenome 3300039104 *Microbiome Permanent Draft Marine microbial communities from mesoscale eddies in Eastern Mediterranean Sea Marine microbial communities from mesoscale eddies in Eastern Mediterranean Sea - G5 Haifa University- The Leon H. Charney School of Marine Sciences 3300039104 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Oceanic Marine Photic zone Marine 32.90567 33.90073 108473226 226363 135 5 278 12 0.0 Metagenome 3300048588 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Sediment microbial communities from brackish wetlands in San Jose, California, USA - ROC5_2 DOE Joint Genome Institute (JGI) 3300048588 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Intertidal zone Marine Salt marsh sediment Sediment 37.427598 -121.938678 1872445926 2755678 636 95 918 141 Unrestricted 19.84 Metagenome 3300029195 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021314-123 Beijing Genomics Institute (BGI) 3300029195 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 100513384 134406 91 0 150 0 0.0 Metagenome 3300007127 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763435843 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007127 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 47732744 95059 40 0 70 0 0.0 Metagenome 3300001112 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Section #3 DOE Joint Genome Institute (JGI) 3300001112 Metagenome Analysis Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.973481 -119.476345 61791375 115167 114 10 210 29 SRX3311902 Unrestricted 0.0 Metagenome 3300005966 *Microbiome Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring and microbial mat streamer communities from Octopus Spring Streamers, Yellowstone National Park, USA - T=80-84 v2 (version 2) DOE Joint Genome Institute (JGI) 3300005966 Metagenome Analysis SPADES v3.5.0 released based on JGI ITS Yes Yes nnivanova@lbl.gov, jim.fredrickson@pnnl.gov Natasha Ivanova, Jim Fredrickson Yes 26140529 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring and microbial mat 44.5340836 -110.7978895 7.8 71045757 131700 39 0 49 0 Unrestricted 0.0 Metagenome 3300037805 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI146_2018_oct_200m DOE Joint Genome Institute (JGI) 3300037805 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 329441594 617105 250 6 349 9 SRX9402606 Unrestricted 23.58 Metagenome 7000000667 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 638754422 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000667 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 81676028 162510 0 0 0 0 0.0 Metagenome 3300027894 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027894 Metagenome Analysis spades v. 3.11.1 Yes Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment watersheds 41.1289 -78.4195 1985935801 4921121 976 67 1867 135 SRX2745779 Unrestricted 0.0 Metagenome 3300048056 *Microbiome Permanent Draft Marine and freshwater sediment microbial communities from various locations Marine sediment microbial communities from Caspian Sea - Caspian_Core_2_4-8_cm DOE Joint Genome Institute (JGI) 3300048056 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes smtechtm@mtu.edu Stephen Techtmann No Environmental Aquatic Sediment Marine Unclassified Marine sediment 39.9902 51.5008 984243347 2491775 745 14 1207 35 Unrestricted 8.15 Metagenome 3300030310 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from adenoma patient in Toronto, Canada - MG100194 University of Michigan 3300030310 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 43.65 -79.38 6636008 9335 17 0 33 0 0.0 Metagenome 3300002518 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - ETNP_6_100 DOE Joint Genome Institute (JGI) 3300002518 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 18.92 -104.89 295474243 660677 9 2 16 0 SRX2557421 Unrestricted 0.0 Metagenome 3300027680 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes) DOE Joint Genome Institute (JGI) 3300027680 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 432323638 1023061 278 2 541 4 SRX4341708 Unrestricted 0.0 Metagenome 7000000689 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159591683 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000689 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 6455245 11417 0 0 0 0 0.0 Metagenome 3300012350 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG DOE Joint Genome Institute (JGI) 3300012350 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.5673 -123.4758 2031919745 3754286 1174 44 1892 86 SRX3372734 Unrestricted 0.0 Metagenome 3300001421 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN120 DOE Joint Genome Institute (JGI) 3300001421 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 39.23550963 -121.2836963 24336 76 11 3 19 3 SRX3311728 Unrestricted 0.0 Metagenome 3300067202 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210527_00_17 DOE Joint Genome Institute (JGI) 3300067202 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 371096975 573228 145 93 207 130 Unrestricted 79.91 Metagenome 3300039080 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-1_at_0-1_cm Genome Quebec 3300039080 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89934 -73.72822 421994358 1114820 614 61 1223 98 0.0 Metagenome 3300040591 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Jones Ecological Research Center, Southeast, GA, USA - JERC_047-M-20170725-COMP-DNA1 Battelle Memorial Institute 3300040591 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.19484 -84.46861 1831308 6590 14 0 29 3 0.0 Metagenome 3300002565 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-311 DOE Joint Genome Institute (JGI) 3300002565 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.290565 -156.788622 274202369 590858 247 0 380 2 SRX1990914 Unrestricted 0.0 Metagenome 3300026185 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_C_black_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026185 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4958 -122.1331 367086926 704083 371 12 590 11 SRX2523666 Unrestricted 0.0 Metagenome 3300057124 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2021-2002 DOE Joint Genome Institute (JGI) 3300057124 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.7269 -83.42329 696629679 1531662 457 191 786 302 Unrestricted 18.54 Metagenome 3300061658 *Microbiome Draft Ultra-acidic sulfur-rich Arctic ponds from Smoking Hills, Northwest Territories, Canada Sediment microbial communites from ultra-acidic sulfur-rich Arctic pond from Smoking Hills, Northwest Territories, Canada - SH11 Reassembly University of Calgary 3300061658 Metagenome Analysis SPAdes v. 3.15.5 released per submitter -- IMGSUPP-4130 Yes Yes pfdunfie@ucalgary.ca; dunfield.bio@gmail.com Peter Dunfield; Dunfield Laboratory No Environmental Aquatic Unclassified Sediment Unclassified Sediment 69.66524327 -126.57943518 0 60562466 79032 20 7 29 6 0.0 Metagenome 3300040309 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONZ_024-M-20160711-COMP-DNA1 Battelle Memorial Institute 3300040309 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.10077 -96.56309 5548887 16839 23 0 39 0 0.0 Metagenome 3300002359 *Microbiome Permanent Draft Microbial community impact on carbon sequestration in managed wetland Carbon farming Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk v2 (version 5) DOE Joint Genome Institute (JGI) 3300002359 Metagenome Analysis Metagenome Standard Draft released based on JGI ITS No Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Sediment Wetland 38.1072 -121.6485 0 0 0 0 0 0 SRX2514378, SRX2514377, SRX2514379, SRX2514380 Unrestricted 0.0 Metagenome 3300027878 *Microbiome Permanent Draft Freshwater microbial communities from lake liftoff mats and glacier meltwater in Antarctica Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-05 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027878 Metagenome Analysis spades v. 3.11.1 Yes Yes slonczewski@kenyon.edu Joan Slonczewski No Environmental Aquatic Ice Freshwater Liftoff microbial mat Freshwater -77.605 163.163 2154455599 3655626 919 30 1282 36 SRX2522270 Unrestricted 0.0 Metagenome 3300012105 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Georgia, USA - TSGA070 MetaG DOE Joint Genome Institute (JGI) 3300012105 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 33.0113 -81.8995 74611640 143692 43 64 57 95 SRX3539713 Unrestricted 0.0 Metagenome 3300070508 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_004-M-20180227-COMP-DNA1 Battelle Memorial Institute 3300070508 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.108972 -119.746305 6.07-6.81 8963843 29925 101 3 181 11 0.0 Metagenome 3300061134 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IF7SW no PMA treatment Jet Propulsion Laboratory, California Institute of Technology 3300061134 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 97908683 155779 18 19 20 31 SRX3808521, SRX3808533, SRX2249339, SRX2249336 0.0 Metagenome 3300028774 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E2_3 DOE Joint Genome Institute (JGI) 3300028774 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 539601642 1325944 690 52 1112 95 SRX5799340 Unrestricted 0.0 Metagenome 3300036798 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in New South Wales, Australia - Pi_5 DOE Joint Genome Institute (JGI) 3300036798 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil -33.6 150.0 1921276847 3185478 364 40 580 52 SRX8385490 Unrestricted 14.56 Metagenome 3300008052 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1553A-02 DOE Joint Genome Institute (JGI) 3300008052 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.1867 -123.8835 345648973 661893 341 20 562 45 SRX2753729 Unrestricted 7.55 Metagenome 3300055546 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.19W.15 SIP fraction DOE Joint Genome Institute (JGI) 3300055546 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 228848575 374396 45 15 92 27 Unrestricted 11.29 Metagenome 3300028090 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25.v15 DOE Joint Genome Institute (JGI) 3300028090 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 216305928 416447 136 16 201 25 SRX8128122, SRX8128121 Unrestricted 0.0 Metagenome 3300059416 *Microbiome Permanent Draft Sorghum rhizosphere and bulk soil microbial communities from University of Arizona Maricopa Agricultural Center, AZ, USA Soil microbial communities from sorghum plot in University of Arizona Maricopa Agricultural Center, AZ, USA - plot10_0-15_20210709 DOE Joint Genome Institute (JGI) 3300059416 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Agricultural land Soil Unclassified Soil 33.07735 -111.974819 417851098 1154637 668 38 1321 52 Unrestricted 6.61 Metagenome 3300045962 *Microbiome Permanent Draft Sediment microbial communities from various rivers and their estuaries in the United States Sediment microbial communities from Parker River estuary, Massachusetts, United States - BTRS19_Sengupta_10S DOE Joint Genome Institute (JGI) 3300045962 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sg.aditi@gmail.com Aditi Sengupta No Environmental Aquatic Intertidal zone Marine Estuary sediment 42.7284 -70.8179 2320454431 3561802 851 56 1305 82 Unrestricted 15.59 Metagenome 3300009423 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423 DOE Joint Genome Institute (JGI) 3300009423 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 27054497, 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 484234419 945196 481 88 686 162 SRX2999540 Unrestricted 0.0 Metagenome 3300042964 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-404 Genome Quebec 3300042964 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 53.417396 -112.911743 867871942 2011755 395 84 658 148 0.0 Metagenome 3300055290 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_43-s37 day 91 DOE Joint Genome Institute (JGI) 3300055290 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1101786847 1603179 192 135 275 166 Unrestricted 65.53 Metagenome 3300016653 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Site 231 with 3.0UM filter J. Craig Venter Institute 3300016653 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater -68.4 78.18278 8.81 32059583 64926 18 9 27 11 0.0 Metagenome 3300044681 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Shark River Slough, Flamingo, Florida, USA - sharkriverslough_2019_sw_WHONDRS-S19S_0042 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300044681 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 25.4098 -80.9642 674782896 1136023 280 62 415 99 Unrestricted 28.2 Metagenome 3300045042 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 003-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300045042 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9573 -106.9861 393803422 976044 352 26 631 33 Unrestricted 7.91 Metagenome 3300020025 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in Ohio, USA - hydraulic fracturing test GB_TM_A DOE Joint Genome Institute (JGI) 3300020025 Metagenome Analysis spades v. 3.10.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 29941576 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Fracking water 40.178 -81.073 19567677 22338 18 0 26 1 SRX3937553 Unrestricted 733.57 Metagenome 3300042044 *Microbiome Permanent Draft Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - Dsc1_a13.6 Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042044 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1237 -89.1404 482228765 649923 5 12 11 18 SRX5234787 0.0 Metagenome 3300039788 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_002-M-38-5-20130701-GEN-DNA1 Argonne National Laboratory 3300039788 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 35533934 78308 44 4 70 2 ERX2134020 0.0 Metagenome 3300015346 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_20JUN2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015346 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 331397070 570560 23 58 51 88 SRX3923123 Unrestricted 10.42 Metagenome 3300033544 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE5 DOE Joint Genome Institute (JGI) 3300033544 Metagenome Analysis spades v. 3.13.0 Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 59.9989 10.7903 84699709 181528 63 44 133 80 SRX7531716 Unrestricted 36.91 Metagenome 3300040184 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 065B_R1 University of Maryland 3300040184 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.51557 18.97242 7991237 14123 22 2 31 3 0.0 Metagenome 3300036399 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Jun2016-rr0036 DOE Joint Genome Institute (JGI) 3300036399 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1564515442 2886618 497 136 750 192 SRX8201836 Unrestricted 14.72 Metagenome 3300043037 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Shale gas microbial communities from Fort St. John, British Columbia, Canada - UGR 12 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043037 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back shale gas 56.0 -122.0 73116044 115542 86 0 119 0 SRX8356884 Unrestricted 162.38 Metagenome 3300039016 *Microbiome Permanent Draft Activated sludge bacterial and viral communities from EBPR bioreactors in Australia Activated sludge bacterial and viral communities from EBPR bioreactors in Queensland, Australia - SBR4-V92704 California Institute of Technology 3300039016 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Activated sludge -27.49999 153.01209 8905245 20051 2 0 4 0 SRX1100509 0.0 Metagenome 3300041507 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG AgResearch, New Zealand, Mosgeil 3300041507 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Unclassified Roots Unclassified White clover root -43.648506 172.343549 887488581 1590124 148 26 518 82 0.0 Metagenome 3300042660 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A21 University of California, Davis 3300042660 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 190029666 536702 276 6 464 4 0.0 Metagenome 3300027471 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027471 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 215047433 573395 398 15 678 19 SRX2574368 Unrestricted 0.0 Metagenome 3300001466 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Nasutitermes corniger midgut segment microbial community from laboratory colony in Florida, USA - Nc150M DOE Joint Genome Institute (JGI) 3300001466 Metagenome Analysis Yes Yes brune@mpi-marburg.mpg.de Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 26.0625 -80.2332 129224034 430338 1 7 4 5 SRX2553508 Unrestricted 0.0 Metagenome 3300007795 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 158458797 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007795 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 74647771 100712 60 1 84 2 0.0 Metagenome 3300027616 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027616 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 315592779 801752 429 41 779 79 SRX3305187 Unrestricted 0.0 Metagenome 3300070791 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountains, Colorado, USA - RMNP_006-O-20170808-COMP-DNA1 3300070791 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 2825763 9199 21 3 42 7 0.0 Metagenome 3300039367 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 263_4M Beijing Genomics Institute (BGI) 3300039367 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 59896924 73823 34 0 47 0 ERX491037 0.0 Metagenome 3300007003 *Microbiome Permanent Draft Mining for adhesins from protozoa-associated epibionts Protozoa-associated epibionts from sheep rumen, Palmerston North, New Zealand - adhesins screened Leibniz Institute 3300007003 Metagenome Analysis Unknown released per JGI data release policy No Yes filomena.ng@agresearch.co.nz Filomena Ng No Host-associated Mammals Stomach Digestive system Rumen Rumen -40.355 175.6117 700825 2686 0 1 4 2 0.0 Metagenome 3300024469 *Microbiome Permanent Draft Permafrost microbial communities from glacier foreland in Svalbard, Norway Permafrost microbial communities from glacier foreland in Svalbard, Norway - ML47 KOREA POLAR RESEARCH INSTITUTE 3300024469 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes sarbjeet.niraula@mavs.uta.edu Sarbjeet Niraula No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 78.90395419 12.07814444 7.9 8503187 25243 68 8 144 14 0.0 Metagenome 3300029727 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37283 Beijing Genomics Institute (BGI) 3300029727 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 154534234 181167 99 0 150 1 0.0 Metagenome 3300027549 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus manae LIZARD ISLAND (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027549 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 528791590 703795 5 3 7 6 SRX2712089 Unrestricted 0.0 Metagenome 7000000540 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 246515023 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000540 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 52642027 79357 0 0 0 0 0.0 Metagenome 3300013700 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100119 University of Pennsylvania 3300013700 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12427669 27695 9 0 20 1 SRX756711 0.0 Metagenome 3300002050 *Microbiome Permanent Draft Soil microbial communities from Amlakhadi River, Gujarat, India Soil microbial communities from Amlakhadi River, Gujarat, India - Sample 4 3300002050 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Aquatic River Freshwater Sediment Soil 21.636337 72.989458 0 0 0 0 0 0 0.0 Metagenome 3300044807 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_12BS DOE Joint Genome Institute (JGI) 3300044807 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.3682 -106.1737 1044582830 1623319 286 43 430 62 SRX20649960 Unrestricted 15.28 Metagenome 3300023496 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_24B University of California, Irvine 3300023496 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 129432477 126852 19 0 21 0 0.0 Metagenome 7000000296 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 159247771 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000296 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 82506363 119471 0 0 0 0 0.0 Metagenome 3300008621 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763536994 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008621 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 172906680 233295 119 0 171 0 0.0 Metagenome 3300005201 *Microbiome Permanent Draft Termite gut microbial communities from Australia Microcerotermes gut microbial communities from Indooroopilly, Australia - IN01 metagenome University of Queensland 3300005201 Metagenome Analysis CLC assembly released per JGI data release policy No Yes nurdyana.abdulrahman@uqconnect.edu.au, nurdyana.abdul.rahman@sgh.com.sg Abdul Rahman, Nurdyana Abdul Rahman No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut -27.5 152.9 1010945619 1665694 131 4 249 1 0.0 Metagenome 3300039389 *Microbiome Permanent Draft Soil microbial communities from the crude oil polluted soil from Bobrka and the control soil from Bialowieza national park, Poland Contaminated soil microbial communities from oil field in Bobrka, Poland - X1A1 Illumina 3300039389 Metagenome Analysis metaSPAdes v. 1.2.4 released by JGI data releasing policy No Yes valeria.imperato@uhasselt.be Valeria Imperato No Environmental Terrestrial Unclassified Soil Oil-contaminated Contaminated soil 49.62633083 21.69249723 23526858 53026 33 7 57 9 0.0 Metagenome 2189573002 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - FE1 (NaCl 30g/L 5ml) 454 Life Sciences 2189573002 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.804241 -0.372114 339493515 953407 375 10 689 22 0.0 Metagenome 3300025094 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC8 2012 metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025094 Metagenome Analysis spades v. 3.11.1 Yes Yes jkjarett@lbl.gov; rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca Jessica Jarett; Ramunas Stepanauskas; Peter Dunfield No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 49.9543 -116.5155 7.94 215279623 286210 154 0 172 0 SRX2839019 Unrestricted 0.0 Metagenome 3300069547 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Ozarks Complex, AL, USA - LENO_003-M-20160829-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069547 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.85388 -88.16122 122882306 346159 173 9 311 15 0.0 Metagenome 3300035005 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Trichormus sp. ATA11-4-KO1 and co-occurring heterotrophs from soil from Atacama Desert, Chile - 20181105_1A DOE Joint Genome Institute (JGI) 3300035005 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Desert Soil Unclassified Soil -21.0129 -69.3515 12586516 12944 4 0 2 0 SRX8237840 Unrestricted 758.06 Metagenome 3300012059 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC075 MetaG DOE Joint Genome Institute (JGI) 3300012059 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 34.5814 -78.4485 143708860 253385 56 59 85 79 SRX3539717 Unrestricted 0.0 Metagenome 3300037832 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site2_nosalt_MVIII_3 DOE Joint Genome Institute (JGI) 3300037832 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Salt marsh microbial mat 20.7452 58.6625 528520388 1090223 224 0 328 0 SRX9169881 Unrestricted 9.76 Metagenome 3300025770 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI037_S3LV_110m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025770 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 625996850 1226193 343 43 504 77 Unrestricted 0.0 Metagenome 3300021177 *Microbiome Permanent Draft Wetland sediment microbial communities from Dorn Creek Dane County, Wisconsin, USA, enriched under anaerobic Fe-reducing conditions Wetland sediment microbial communities from Wisconsin, USA, enriched under anaerobic conditions and in the presence of Ferrihydrite-Humic Acid Coprecipitates and Glucose - 1AB University of Wisconsin, Madison 3300021177 Metagenome Analysis Spades 3.10.0 released by JGI data releasing policy Yes Yes jmejia@wisc.edu Jacqueline Mejia No Environmental Aquatic Wetlands Freshwater Sediment Wetland Sediment 43.144933 -89.471218 1199553686 2809658 499 10 855 16 0.0 Metagenome 3300007846 *Microbiome Permanent Draft Clones from fosmidial library constructed using mangrove sediment Mangrove sediment microbial communities from Bertioga, Sao Paulo, Brazil - Clones from fosmid library, F7_contig3 Molecular Research LP (MR DNA) 3300007846 Metagenome Analysis IDBA released per JGI data release policy No Yes luc.g.cabral@gmail.com Luc?lia Cabral, Lucelia Cabral No Environmental Aquatic Unclassified Sediment Unclassified sediment -23.8553 -46.1394 10746 15 0 0 0 0 0.0 Metagenome 3300005921 *Microbiome Permanent Draft Soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, under manipulated climate change conditions. Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 DOE Joint Genome Institute (JGI) 3300005921 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jmtalbot@bu.edu, jmtalbot@bu.edu; ptempler@bu.edu Jennifer Talbot, Jennifer Bhatnagar; Pamela Templer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 2953428149 8571932 1337 92 2338 165 SRX2838818 Unrestricted 0.0 Metagenome 3300035287 *Microbiome Permanent Draft Extreme environments viral communities from various locations Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 490_2000 DOE Joint Genome Institute (JGI) 3300035287 Metagenome Analysis spades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified filtered seawater 13.3498 -44.8801 174724882 471465 22 10 47 18 SRX7709951 Unrestricted 100.77 Metagenome 3300002611 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A4-12 DOE Joint Genome Institute (JGI) 3300002611 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 157828 546 5 1 31 1 SRX1991287 Unrestricted 0.0 Metagenome 3300026903 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A1-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300026903 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 35644193 117040 97 0 206 0 SRX1990514 Unrestricted 0.0 Metagenome 3300038428 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P8_D8 DOE Joint Genome Institute (JGI) 3300038428 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 570942459 768315 159 2 202 1 SRX9472174 Unrestricted 37.26 Metagenome 3300027525 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027525 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 294746596 654005 355 50 511 81 SRX2753513 Unrestricted 21.3 Metagenome 3300002476 *Microbiome Permanent Draft Freshwater microbial community from Sao Paulo Zoo Lake, Brazil Freshwater microbial communities from San Paulo Zoo lake, Brazil - NOV 2012 3300002476 Metagenome Analysis SoapDeNovo released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Lake -23.651072 -46.620675 409787458 1074618 15 5 107 8 0.0 Metagenome 3300034073 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL DOE Joint Genome Institute (JGI) 3300034073 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back fracking water 35.784 -98.26 716305697 1679885 612 102 1027 210 SRX7524904 Unrestricted 64.86 Metagenome 3300025335 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIRHL08 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025335 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5602 78.1968 4608562 6489 4 0 5 0 SRX2747201 Unrestricted 0.0 Metagenome 3300009597 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299 DOE Joint Genome Institute (JGI) 3300009597 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8895 -106.9086 235057007 497192 247 16 500 31 SRX2754309 Unrestricted 0.0 Metagenome 3300000124 *Microbiome Draft Marine microbial communities from chronically polluted sediments in four geographic locations Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 12_21m DOE Joint Genome Institute (JGI) 3300000124 Metagenome Analysis released based on JGI ITS Yes Yes hdionisi@cenpat.edu.ar Hebe Dionisi No Environmental Aquatic Wetlands Marine Sediment Marine 59.363333 18.119167 421162879 1084178 710 63 1263 104 Unrestricted 0.0 Metagenome 3300004052 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D2 DOE Joint Genome Institute (JGI) 3300004052 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.198971 -122.026955 914804914 2938323 834 18 1889 34 SRX7142965 Unrestricted 0.0 Metagenome 3300026223 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026223 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Permafrost Soil 68.6137 -149.3144 263695825 593882 185 7 340 7 SRX2739470 Unrestricted 0.0 Metagenome 3300040698 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Jones Ecological Research Center, Southeast, GA, USA - JERC_002-M-20140910-COMP-DNA1 Argonne National Laboratory 3300040698 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.19484 -84.46861 1099041 3361 16 4 35 5 ERX2133964 0.0 Metagenome 3300033053 *Microbiome Permanent Draft Characterization of microbial community from aquifers in Araihazar, Bangladesh Aquifer sediment microbial communities from Pleistocene sands, Araihazar, Bangladesh - F4 Site sediment University of Manchester 3300033053 Metagenome Analysis Megahit v. 1.0.6 released by JGI data releasing policy No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Terrestrial Aquifer Deep subsurface Unclassified Aquifer sediment 23.774 90.606 108058598 227518 238 12 463 16 0.0 Metagenome 3300041670 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_15 MetaG AgResearch, New Zealand, Mosgeil 3300041670 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1021453937 2257321 346 41 1122 51 0.0 Metagenome 3300021344 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - U2a2 DOE Joint Genome Institute (JGI) 3300021344 Metagenome Analysis spades v. 3.11.1-check Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9362 -106.9425 798625692 1702744 438 22 815 35 SRX3948172 Unrestricted 23.05 Metagenome 3300009078 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015 DOE Joint Genome Institute (JGI) 3300009078 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wilkins.231@osu.edu, mike.wilkins@colostate.edu Michael Wilkins No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0991 -99.1044 1872132869 3550220 1183 10 2005 15 SRX2753791 Unrestricted 0.0 Metagenome 3300042713 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from Lucky Strike-Eifeltower hydrothermal vent, Atlantic Ocean - BazoSym_LS-ET_5_1048J Re-assembly Max Planck Institute for Marine Microbiology 3300042713 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 37.28292 -32.27561 7451933 11422 5 1 8 3 ERX3367189 0.0 Metagenome 3300045498 *Microbiome Permanent Draft Florida Reef Tract Coral Disease Outbreak Coral surface microbial communities from Montastraea cavernosa, offshore reef, Ft. Lauderdale, FL, USA - McLGI -2 University of Florida 3300045498 Metagenome Analysis MEGAHIT v. 1.1.4 released per PI No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified coral surface 26.16 -80.1 214423760 247774 83 3 85 1 0.0 Metagenome 3300022167 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022167 Metagenome Analysis spades v. 3.11.1-check Yes Yes chenf@umces.edu; bcampb7@clemson.edu Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.12 -75.25 145010132 381034 13 0 13 1 SRX3786009, SRX2838063, SRX3786010 Unrestricted 0.0 Metagenome 3300022841 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #291 DOE Joint Genome Institute (JGI) 3300022841 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 109878484 206746 67 18 81 23 SRX4396754 Unrestricted 23.27 Metagenome 3300045981 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_7_E DOE Joint Genome Institute (JGI) 3300045981 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 214350091 250936 119 1 149 1 Restricted 118.85 Metagenome 3300021203 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge C. singaporensis associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - co35is 200bp-microeukaryotes University of New South Wales 3300021203 Metagenome Analysis IDBA-UD released by JGI data releasing policy Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Coelocarteria singaporensis -9.8241 150.825833 235351 551 0 0 0 0 0.0 Metagenome 3300012291 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100382 University of Pennsylvania 3300012291 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 5146611 9191 8 3 23 8 SRX756275 0.0 Metagenome 3300030208 *Microbiome Permanent Draft Chicken ceca and crop associated microbial communities from Bologna, Italy Chicken ceca associated microbial communities from Bologna, Italy - LSA_XT_57 University of Bologna 3300030208 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Birds Large intestine Digestive system Ceca Chicken ceca associated 44.26 11.28 18856452 34409 28 0 40 0 ERX1795363 0.0 Metagenome 3300050127 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim2 10-14 DOE Joint Genome Institute (JGI) 3300050127 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.353634 19.04734 610111825 917844 178 26 312 29 Restricted 12.11 Metagenome 3300026866 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 76 (SPAdes) DOE Joint Genome Institute (JGI) 3300026866 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 49957135 119340 69 0 127 0 SRX4341375 Unrestricted 0.0 Metagenome 3300044662 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Roots microbial communities from millet plant in semiarid region near Thies, Senegal - COA4E DOE Joint Genome Institute (JGI) 3300044662 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Unclassified Roots Unclassified Root 14.75 -16.85 796516859 1208773 13 21 36 58 Unrestricted 25.56 Metagenome 3300012627 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100570 University of Pennsylvania 3300012627 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 22882855 51546 44 7 77 14 SRX756184 0.0 Metagenome 3300007632 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1554A-3 DOE Joint Genome Institute (JGI) 3300007632 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2871 -123.9424 281823671 552722 344 54 539 113 Unrestricted 0.0 Metagenome 3300005195 *Microbiome Permanent Draft Mallorca 2014 E2 E2 T8 University of Alicante 3300005195 Metagenome Analysis IDBA 1.1.1 PRE correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline 39.338015 3.051796 43205892 120485 6 0 10 0 0.0 Metagenome 3300044723 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Estuarine water microbial communities from San Francisco Bay, California, United States - Oct18_FB_1_27S DOE Joint Genome Institute (JGI) 3300044723 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 37.6183 -122.2916 929327922 1552668 308 92 422 143 Unrestricted 73.22 Metagenome 3300014958 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS53_24 University of Hohenheim 3300014958 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 151400607 235305 97 0 168 1 0.0 Metagenome 3300037519 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03May2011-rr0142 DOE Joint Genome Institute (JGI) 3300037519 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 768576033 1044353 172 102 236 139 SRX9139780 Unrestricted 19.55 Metagenome 3300029966 *Microbiome Permanent Draft Fecal microbial communities from free-living howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from free-living howler monkeys from Sao Paulo Zoo, Brazil - Ind. 1-3, S3 Reanalysis Center for Advanced Technologies in Genomics, Sao Paulo University 3300029966 Metagenome Analysis metaSPAdes v. 3.12.0 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 94963014 167274 142 2 144 5 0.0 Metagenome 3300038821 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog16 BILS 3300038821 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 4084215 10214 8 3 19 3 ERX1594838 0.0 Metagenome 3300013978 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00943 Weill Cornell Medical College 3300013978 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -73.9 7198825 11211 4 0 6 0 SRX822906 0.0 Metagenome 3300028469 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_07AUG2017_LD1 DOE Joint Genome Institute (JGI) 3300028469 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 54267166 101400 32 54 44 94 SRX5345830 Unrestricted 20.1 Metagenome 3300046493 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvCe-F(1) 10-14 DOE Joint Genome Institute (JGI) 3300046493 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3547 19.0433 620109132 985189 254 4 359 3 Restricted 12.63 Metagenome 3300069472 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_046-M-20140716-COMP-DNA1 re-annotation Argonne National Laboratory 3300069472 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 8518023 24234 23 0 54 3 ERX2133946 0.0 Metagenome 3300037358 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPON1-1-M DOE Joint Genome Institute (JGI) 3300037358 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3569 19.0501 1141191724 2121141 372 9 678 19 SRX9097224 Unrestricted 9.57 Metagenome 3300014617 *Microbiome Permanent Draft Human skin microbial communities from psoriasis patients in Trento, Italy Human skin microbial communities from psoriasis patients in Trento, Italy - SKCT13_b2_33 University of Trento 3300014617 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Skin surface Human skin 46.0667 11.1167 12416835 23675 14 2 32 5 SRX1015753 0.0 Metagenome 3300047500 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_1_A DOE Joint Genome Institute (JGI) 3300047500 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 166606124 190703 86 1 108 2 Restricted 0.0 Metagenome 3300056360 *Microbiome Permanent Draft Freshwater microbial communities from high-altitude lakes in Yosemite National Park, California, USA Freshwater microbial communities from Lukens Lake, Yosemite National Park, California, USA - Y16_303_L2_tf DOE Joint Genome Institute (JGI) 3300056360 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmbeman@gmail.com J Michael Beman No Environmental Aquatic Lake Freshwater Unclassified Freshwater 37.8598 -119.616 65435488 162416 63 9 114 15 Unrestricted 92.2 Metagenome 3300029046 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 326_M Beijing Genomics Institute (BGI) 3300029046 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 123490001 166555 110 1 154 1 ERX491078 0.0 Metagenome 3300020049 *Microbiome Permanent Draft Freshwater viral communities from Chicago Sanitary Ship Canal, USA Freshwater viral communities from Romeoville, Illinois, USA - 1 University of Illinois-Urbana Champaign 3300020049 Metagenome Analysis SPADES v3.10.1 released by JGI data releasing policy No Yes wtliu@illinois.edu Wen-Tso Liu No Environmental Aquatic River Freshwater Unclassified Freshwater 41.64 -88.059722 639763689 1331676 4 0 7 0 0.0 Metagenome 3300028608 *Microbiome Permanent Draft Soil microbial communities from agricultural site in Penn Yan, New York, United States Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6 DOE Joint Genome Institute (JGI) 3300028608 Metagenome Analysis spades v. 3.11.1 Yes Yes dbuckley@cornell.edu Dan Buckley No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.673 -77.032 2587669006 6924187 1692 90 3003 158 SRX5246690 Unrestricted 29.3 Metagenome 3300028487 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_2000m DOE Joint Genome Institute (JGI) 3300028487 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified marine 50.0 -145.0 443500965 969637 300 36 459 62 SRX5244196 Unrestricted 23.66 Metagenome 3300042553 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06Sep2013-rr0606 DOE Joint Genome Institute (JGI) 3300042553 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1049786533 1621989 394 50 577 73 Unrestricted 16.16 Metagenome 3300025228 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025228 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 110864649 145381 73 0 73 0 SRX2770669 Unrestricted 0.0 Metagenome 3300000503 *Microbiome Permanent Draft Salt marsh microbial communities from Little Sippewissett, Woods Hole, MA that are anoxygenic and photosynthetic Microbial Communities from Little Sippewissett Salt Marsh, Woods Hole, MA that are anoxygenic and photosynthetic, Photosynthetic Consortia grown using light of 750nm Marine Biological Laboratory 3300000503 Metagenome Analysis No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Intertidal zone Marine Salt marsh Salt Marsh 41.5758508 -70.635807 81212271 161897 56 0 120 0 0.0 Metagenome 3300027170 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C43A7_35 (SPAdes) DOE Joint Genome Institute (JGI) 3300027170 Metagenome Analysis spades v. 3.11.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 173785748 406862 214 40 306 102 SRX1990987 Unrestricted 0.0 Metagenome 7000000179 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 159814214 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000179 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 72021 190 0 0 0 0 SRX023562, SRX023561 0.0 Metagenome 3300048807 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 P1 1-5 DOE Joint Genome Institute (JGI) 3300048807 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.0471 495147631 799305 146 21 278 32 Restricted 11.67 Metagenome 3300025908 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025908 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 2281378737 5727862 1338 90 2323 181 SRX2832623 Unrestricted 0.0 Metagenome 3300049483 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Burlington, Massachusetts, USA - sawmillbrook_2019_sed_WHONDRS-S19S_0072 DOE Joint Genome Institute (JGI) 3300049483 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 42.5235645 -71.1848201 321551829 698855 582 33 1072 45 Unrestricted 9.33 Metagenome 3300045891 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Geyser Creek, Yellowstone National Park, WY, United States - MSUNE_GC_06 University of Wisconsin, Madison 3300045891 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.688757 -110.727987 131470745 191771 104 6 134 0 0.0 Metagenome 3300041974 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego desert, Southern California, United States - 2020_S2v DOE Joint Genome Institute (JGI) 3300041974 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified Soil 33.3052 -116.2547 223332935 592333 569 29 1015 47 SRX14810482 Unrestricted 9.87 Metagenome 3300029803 *Microbiome Permanent Draft Crustal fluid microbial communities from North Pond, Mid-Atlantic Ridge, Atlantic Ocean 2014 cruise Crustal fluid microbial communities from North Pond, Mid-Atlantic Ridge, Atlantic Ocean - 1383CS 2014 Marine Biological Laboratory 3300029803 Metagenome Analysis IDBA-UD v. 1.1.2 released by JGI data releasing policy No Yes lmseyler@gmail.com Lauren Seyler No Environmental Aquatic Oceanic Marine Crustal Fluids Oceanic crustal fluids 22.75 -46.083 2925864 5172 7 0 11 0 0.0 Metagenome 3300022448 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Lake Baghdad, Rottnest Island (WA - Australia) - LBBM2 JM68 AGRF 3300022448 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.994794 115.523776 42717321 83546 48 2 64 0 0.0 Metagenome 3300026675 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN344 (SPAdes) DOE Joint Genome Institute (JGI) 3300026675 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 8508674 26768 54 7 67 6 SRX1986734 Unrestricted 0.0 Metagenome 3300011631 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00270 Weill Cornell Medical College 3300011631 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.97 28102484 43644 17 0 29 0 SRX822243 0.0 Metagenome 3300001396 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 210-2 deep-072012 DOE Joint Genome Institute (JGI) 3300001396 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 99463914 232680 76 1 91 2 SRX1987240 Unrestricted 0.0 Metagenome 3300070869 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_043-M-20170801-COMP-DNA1 Battelle Memorial Institute 3300070869 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 46.234247 -89.542459 4.91-5.65 3052010 9959 21 1 42 2 0.0 Metagenome 3300024501 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Miss_RepB_8d DOE Joint Genome Institute (JGI) 3300024501 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 127970482 277988 130 8 222 19 SRX4547489 Unrestricted 17.9 Metagenome 3300013994 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -PAB004 Weill Cornell Medical College 3300013994 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -74.01 14459104 22607 14 1 13 1 SRX823432 0.0 Metagenome 3300047187 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2018 MH01_10cm DOE Joint Genome Institute (JGI) 3300047187 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.358 19.0415 157698208 262847 135 9 232 9 Restricted 36.14 Metagenome 3300026821 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B nyco_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026821 Metagenome Analysis spades v. 3.11.1 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.7219 -110.7021 61002976 101249 35 0 55 0 SRX2917363, SRX2917362 Unrestricted 0.0 Metagenome 3300014352 *Microbiome Finished Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India - point GR3 85 Life Technologies 3300014352 Metagenome Analysis MetaVelvet v1.2.01 released by JGI data releasing policy No Yes sarkar.jayeeta12@gmail.com, psar@hijli.iitkgp.ernet.in Pinaki Sar No Engineered Built environment Petroleum sludge Oil refinery Unclassified petroleum sludge 26.18471 91.80725 120334940 359185 275 1 457 2 SRX2510723 0.0 Metagenome 3300031628 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #229 DOE Joint Genome Institute (JGI) 3300031628 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5596 77.8957 362971026 805286 274 269 349 497 SRX5650088 Unrestricted 14.27 Metagenome 3300007973 *Microbiome Permanent Draft Microbial communities from Columbia River Estuary, Oregon, USA Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um Oregon State University 3300007973 Metagenome Analysis megahit released per JGI data release policy Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Coastal Marine Unclassified estuary water 46.2357 -123.9153 492815387 1063647 435 19 666 29 0.0 Metagenome 3300003855 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius ullae BAHAMAS.2 DOE Joint Genome Institute (JGI) 3300003855 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 146407232 410353 8 2 3 0 SRX3299598 Unrestricted 0.0 Metagenome 3300052663 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Photosynthetic mat viral communities from Mushroom Spring, YNP, Wyoming, United States - MS 20050701 t4 DOE Joint Genome Institute (JGI) 3300052663 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 31573506 49338 17 1 32 2 Unrestricted 0.0 Metagenome 3300040970 *Microbiome Permanent Draft Freshwater microbial communities from various watersheds in Southwestern British Columbia, Canada Freshwater microbial communities from Southwestern British Columbia, Canada - NEG_070 University of British Columbia 3300040970 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 49.0 -123.0 6363753 9970 2 0 6 0 0.0 Metagenome 3300043151 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - CCW_080817 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043151 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.9035 -89.3341 26028825 83255 110 8 190 18 SRX8889439 Unrestricted 12.53 Metagenome 3300001575 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP2914 DOE Joint Genome Institute (JGI) 3300001575 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 29.97 -23.69 60091275 137155 86 7 130 9 SRX1981967 Unrestricted 0.0 Metagenome 3300022304 *Microbiome Permanent Draft Lab enrichment of oil well rock microbial communities from petroleum reservoir, Carmopolis, SE, Brazil - Rocha G46 - 1053 Lab enrichment of oil well rock microbial communities from petroleum reservoir, Carmopolis, SE, Brazil - Rocha G46 - 1053 Federal University of Rio Grande do Norte 3300022304 Metagenome Analysis Geneious10.2.3 released by JGI data releasing policy No Yes lfagnez@ufrnet.br Lucymara Agnez-Lima No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil reservoir sediment -10.6453 -36.9891 790916610 2958365 6371 0 12111 135 0.0 Metagenome 3300049288 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MB13 DOE Joint Genome Institute (JGI) 3300049288 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 8828554 23946 44 0 88 0 Unrestricted 12.39 Metagenome 3300023017 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU3 DOE Joint Genome Institute (JGI) 3300023017 Metagenome Analysis spades v. 3.11.1 Yes Yes baldrian@biomed.cas.cz; kostelecke.uzeniny@seznam.cz Petr Baldrian; Tomas Vetrovsky No Host-associated Plants Unclassified Roots Unclassified roots 49.0431 13.617 28554557 53773 18 14 23 29 SRX4456786 Unrestricted 84.9 Metagenome 3300022243 *Microbiome Permanent Draft Anaerobic microbial community of wastewater bioreactor in Changsha, Hunan, China Activated sludge microbial communities from anaerobic bioreactor in Hunan University, Changsha, China - 2 Beijing Novogene Bioinformatics Technology Co., Ltd 3300022243 Metagenome Analysis IDBA v.1.1.1 released by JGI data releasing policy No Yes yuezheng@uw.edu Yue Zheng No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 28.179 112.9438 544089445 1026068 526 3 817 5 0.0 Metagenome 3300025302 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025302 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.9082 -79.0499 414835864 658617 129 2 164 6 SRX2562212 Unrestricted 0.0 Metagenome 3300019378 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Alfalfa, Gen0, Rep 2, Chloramphenicol DOE Joint Genome Institute (JGI) 3300019378 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4148 -119.8405 2274013038 4118715 4385 1944 6743 3600 SRX3963291 Unrestricted 11.86 Metagenome 3300012893 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1 DOE Joint Genome Institute (JGI) 3300012893 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 557710518 1397192 650 51 1147 103 SRX3297070 Unrestricted 4.08 Metagenome 3300050003 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CAF3 DOE Joint Genome Institute (JGI) 3300050003 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 305343304 827562 444 14 841 20 Restricted 0.0 Metagenome 3300025423 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH15Jun09 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025423 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 155499476 313145 83 21 129 35 SRX2566687 Unrestricted 0.0 Metagenome 3300070887 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone National Park, Wyoming, USA - YELL_003-M-20180710-COMP-DNA1 Battelle Memorial Institute 3300070887 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 44.954777 -110.533202 15179795 49124 80 7 200 9 0.0 Metagenome 3300047169 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Southern Region, Iceland - Sphagnum auriculatum 5_AUR_ICE DOE Joint Genome Institute (JGI) 3300047169 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.1141 -20.4961 1341391381 1962522 400 85 551 217 SRX14786705 Unrestricted 9.6 Metagenome 3300047636 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA112b-BCH DOE Joint Genome Institute (JGI) 3300047636 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6792 -83.4776 646303833 1532122 394 44 703 53 Unrestricted 8.69 Metagenome 3300038675 *Microbiome Permanent Draft Metagenomes from Anaerobic Digestors at Pulp and Paper Mills Anaerobic lagoon sludge microbial community from a pulp and paper mill in Alberta, Canada - WF170825 MSP University of Toronto 3300038675 Metagenome Analysis spades v. 3.12.0 Yes Yes elizabeth.edwards@utoronto.ca; camillaln@gmail.com Elizabeth A. Edwards; Camilla Nesb? No Engineered Bioreactor Unclassified Anaerobic Unclassified anaerobic sludge 55.3025 -114.7598 368258267 436922 101 3 162 3 0.0 Metagenome 3300017734 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 4 SPOT_SRF_2009-09-24 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017734 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 266697697 633192 73 36 153 68 SRX7207076, SRX7207077 Unrestricted 0.0 Metagenome 3300003210 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10K2-12 DOE Joint Genome Institute (JGI) 3300003210 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 223049 744 32 1 54 3 SRX2576202 Unrestricted 0.0 Metagenome 3300069553 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Moab, Southern Rockies & Colorado Plateau, UT, USA - MOAB_045-M-20170523-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069553 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.24833 -109.38827 11839798 37535 35 3 83 1 0.0 Metagenome 3300010931 *Microbiome Permanent Draft Marine sediment microbial communities from North Pond, Atlantic Mid-Ocean Ridge. Marine sediment microbial communities from North Pond, Atlantic Mid-Ocean Ridge - NP_U1383E_lower_OATZ Marine Biological Laboratory 3300010931 Metagenome Analysis SPAdes released by JGI data releasing policy No Yes rui.zhao@uib.no Rui Zhao No Environmental Aquatic Sediment Marine Unclassified Marine sediment 22.8 -46.05 101693936 204288 80 11 140 17 0.0 Metagenome 3300040674 *Microbiome Permanent Draft Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada - diffuse fluids EMf3 Dalhousie University 3300040674 Metagenome Analysis Megahit v. 1.2.8 released by JGI data releasing policy No Yes smurdock@uvic.ca Sheryl Murdock No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Marine 47.95 -129.0971 550598728 1238515 424 128 729 246 0.0 Metagenome 3300047091 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 soil DOE Joint Genome Institute (JGI) 3300047091 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.588219 -123.193899 6.54 473124700 894515 306 13 576 28 Unrestricted 21.2 Metagenome 3300001120 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 DOE Joint Genome Institute (JGI) 3300001120 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 16435888 51159 157 24 266 36 SRX2021673, SRX1985855, SRX1985854 Unrestricted 0.0 Metagenome 3300005727 *Microbiome Permanent Draft Microbial assemblages from M. leidyi gut Fall M. leidyi microbial assemblages Auburn University 3300005727 Metagenome Analysis CLC Genomics Workbench 8.0.1 released per JGI data release policy No Yes mossant@auburn.edu Anthony Moss No Host-associated Invertebrates Unclassified Ctenophora Unclassified Gut -88.083318 30.234331 20477574 65780 0 6 0 6 0.0 Metagenome 3300021136 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 hypolimnion v3 DOE Joint Genome Institute (JGI) 3300021136 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.0412 -89.6864 242798092 500175 202 16 365 26 Unrestricted 0.0 Metagenome 3300006084 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTD1200_DNA Marine Biological Laboratory 3300006084 Metagenome Analysis CLC genomics wb7 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Unclassified Water from within volcano caldera 45.9332 -129.9988 35162592 104644 32 10 78 19 0.0 Metagenome 3300013219 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100532 University of Pennsylvania 3300013219 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 23698314 60943 42 17 91 27 SRX756222 0.0 Metagenome 3300035603 *Microbiome Permanent Draft Marine microbial communities from Baffin Bay, Canada Marine microbial communities from Baffin Bay, Canada - S132_68m Genome Quebec 3300035603 Metagenome Analysis Spades v. 3.12.0 released by JGI data releasing policy Yes Yes thomas.grevesse@gmail.com Thomas Grevesse No Environmental Aquatic Oceanic Marine Photic zone marine 78.59677 -72.15558 528871176 1288796 191 120 296 223 0.0 Metagenome 3300014130 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Venezuela to Iowa, USA - V12 Iowa State University 3300014130 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 17195099 35851 3 2 7 3 SRX1150307 0.0 Metagenome 2029527001 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - 10325 DOE Joint Genome Institute (JGI) 2029527001 Metagenome Analysis lucy / pga Released because it is more than 5 years old dataset No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.393704 -110.567703 9737318 19519 6 0 11 0 0.0 Metagenome 2088090004 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P1 v1 DOE Joint Genome Institute (JGI) 2088090004 Metagenome Analysis released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 73273509 122148 41 0 54 0 Unrestricted 0.0 Metagenome 3300011129 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, 0.02 Toyama Prefectural University 3300011129 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Unclassified marine 37.36555 137.72861 8.1 46358163 118999 22 1 28 6 0.0 Metagenome 3300065631 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 812 in Tilley, Alberta, Canada - S00JY_0131 Microbiome Insights 3300065631 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 50.2538415 -111.39339 570584 935 8 0 31 0 0.0 Metagenome 3300017410 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_12SEP2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017410 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 251779423 449231 47 95 65 113 SRX3927014 Unrestricted 9.35 Metagenome 3300013884 *Microbiome Permanent Draft Microbial communities from methanogenic microcosms from oil petroleum samples laboratory microbial enrichments from Reconcavo Basin petroleum reservoir, Newcastle Upon Tyne, UK - DNA Enri 1 DNA Enri1 UNIVERSIDADE DE SAO PAULO 3300013884 Metagenome Analysis METASPADES k=79 No Yes inatalia.sierra@gmail.com Isabel Natalia Sierra Garcia No Engineered Lab enrichment Anaerobic media Defined media Unclassified Laboratory microcosms 54.97825278 -1.61778056 42142927 66765 47 0 55 0 0.0 Metagenome 3300030403 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from adenoma patient in Toronto, Canada - MG100191 University of Michigan 3300030403 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 43.65 -79.38 25426241 43834 32 0 56 0 0.0 Metagenome 3300070997 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_003-M-20190618-COMP-DNA1 3300070997 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 107337 383 3 0 8 0 0.0 Metagenome 3300018431 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_05_30cm DOE Joint Genome Institute (JGI) 3300018431 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2526630165 6002611 2008 69 3472 118 SRX3105576 Unrestricted 0.0 Metagenome 3300070601 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone National Park, Wyoming, USA - YELL_002-M-20190819-COMP-DNA1 Battelle Memorial Institute 3300070601 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 44.932467 -110.634896 6.18-6.33 9592742 29646 50 5 125 7 0.0 Metagenome 3300055351 *Microbiome Permanent Draft Co-cultures of unialgal cyanobacteria with co-existing heterotrophic bacteria from Dresden University of Technology, Germany Co-culture of unialgal cyanobacterium with co-existing heterotrophic bacterium from Dresden University of Technology, Germany - Nostoc_73.1/Streptobacillus DOE Joint Genome Institute (JGI) 3300055351 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes paul.dagostino@tu-dresden.de Paul M. D'Agostino No Host-associated Microbial Unclassified Bacteria Unclassified Lab culture 51.028586 13.73135 91899515 88773 35 0 35 0 Restricted 109.92 Metagenome 3300009770 *Microbiome Permanent Draft Anaerobic biogas reactor microbial communites from Washington, USA Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2_A C12 SIP DNA DOE Joint Genome Institute (JGI) 3300009770 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dacb@uw.edu David Beck Yes 28895946 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic biogas reactor 47.6525 -122.3049 855615378 1528422 564 2 869 0 SRX2339139 Unrestricted 0.0 Metagenome 3300055724 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.2W.6 SIP fraction DOE Joint Genome Institute (JGI) 3300055724 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 219615480 447433 206 18 327 26 Unrestricted 11.03 Metagenome 3300051852 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Butler, South Dakota, USA - 115_881_SD_DR_1m_c1_T0_16O DOE Joint Genome Institute (JGI) 3300051852 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 45.27223 -97.8369 2017697807 3046904 600 5 977 5 Restricted 0.0 Metagenome 3300060431 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210605_09_01 DOE Joint Genome Institute (JGI) 3300060431 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 464256124 689262 245 140 304 200 Unrestricted 22.3 Metagenome 3300029921 *Microbiome Permanent Draft Sediment archaeal communities from Los Azufres geothermal field, Michoacan, Mexico Sediment archaeal communities from Los Azufres geothermal field, Michoacan, Mexico - S1 National Universisty of Mexico (UNAM) 3300029921 Metagenome Analysis SPAdes v. 3.8.2 released by Roberto Marin No Yes roberto.marin.ibq@gmail.com Roberto Marin No Environmental Aquatic Sediment Thermal springs Unclassified sediments 19.47 -100.32 11295088 13617 6 1 7 2 0.0 Metagenome 3300013690 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01044 Weill Cornell Medical College 3300013690 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.67 -73.9 19128079 25513 16 0 29 1 SRX823006 0.0 Metagenome 3300020275 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100002003 (ERX555991-ERR599175) CEA Genoscope 3300020275 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 6.3929 -103.0691 285807013 643976 209 19 397 41 0.0 Metagenome 3300006100 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006100 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 254926879 675600 165 66 242 93 SRX2565196 Unrestricted 0.0 Metagenome 3300059578 *Microbiome Permanent Draft Soil microbial communities from Blodgett Forest Research Station, California, USA Soil microbial communities from Blodgett Forest Research Station, California, USA - BWE201406032H8090 DOE Joint Genome Institute (JGI) 3300059578 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.9122 -120.6612 1577308645 2635370 475 26 874 35 Unrestricted 32.24 Metagenome 3300045474 *Microbiome Permanent Draft Sediment microbial communities from various rivers and their estuaries in the United States Sediment microbial communities from Beaver Creek, Washington, United States - BTRS19_Sengupta_1F DOE Joint Genome Institute (JGI) 3300045474 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sg.aditi@gmail.com Aditi Sengupta No Environmental Aquatic River Freshwater Sediment sediment 46.9042 -123.965 389488840 741401 353 25 696 53 Unrestricted 26.6 Metagenome 3300012983 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C2 Day 2 Metagenome DOE Joint Genome Institute (JGI) 3300012983 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Fecal 38.04 -122.5 2164568987 4618631 4736 39 7864 59 SRX3205794 Unrestricted 0.0 Metagenome 3300029201 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human oral microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002619-34 Beijing Genomics Institute (BGI) 3300029201 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Dental plaque Host-associated 39.911947 116.4156125 111724315 147917 115 0 130 0 ERX547457 0.0 Metagenome 3300020340 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX555960-ERR599119) CEA Genoscope 3300020340 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -8.895 -142.6228 297777182 747742 215 15 369 17 0.0 Metagenome 3300030322 *Microbiome Permanent Draft Activated sludge microbial communities from CSTR anaerobic reactor in Belvaux, Luxembourg Activated sludge microbial communities from CSTR anaerobic reactor in Belvaux, Luxembourg - CSTR_M20 Luxembourg Institute of Science and Technology 3300030322 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Bioreactor Unclassified Anaerobic Unclassified Activated sludge 49.508281 5.943742 19881759 29766 36 0 51 0 0.0 Metagenome 3300009094 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300009094 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Host-associated Plants Rhizosphere Roots Soil Populus rhizosphere 35.8444 -83.9599 4739869925 8989354 2238 108 3504 173 SRX2748709, SRX2748708, SRX2748710 Unrestricted 0.0 Metagenome 3300043076 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver small intestine microbial communities from Maple Ridge, British Columbia, Canada - Beaver1Small.Intestine1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043076 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Small intestine Digestive system Unclassified small intestine 49.18 -122.54 333606819 527716 24 6 51 10 SRX8344185 Unrestricted 21.86 Metagenome 3300021408 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - H3c1 DOE Joint Genome Institute (JGI) 3300021408 Metagenome Analysis spades v. 3.11.1-check Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9821 -107.0102 187045460 381197 212 17 412 23 SRX3944462, SRX3944461 Unrestricted 0.0 Metagenome 3300042472 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2016-rr0684 DOE Joint Genome Institute (JGI) 3300042472 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 755776702 1153278 215 72 290 103 Unrestricted 15.27 Metagenome 3300001857 *Microbiome Permanent Draft Trichloroethene dechlorinating bioreactor microbial communities from Berkeley, California, USA Trichloroethene dechlorinating bioreactor microbial communities from Berkeley, California, USA - LACBS006A 3300001857 Metagenome Analysis released by JGI data releasing policy No Yes benstenuit@gmail.com Benoit stenuit, Ben A. Stenuit No Engineered Bioremediation Chloroethene Tetrachloroethylene and derivatives Bioreactor Trichloroethene dechlorinating bioreactor 37.87 -122.26 12225682 26238 0 0 0 0 0.0 Metagenome 2022920017 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP19 Cistern Spring v2 (version 2) DOE Joint Genome Institute (JGI) 2022920017 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23720654 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.7230812 -110.7040247 4.4 13622363 20366 253 0 13 0 Unrestricted 0.0 Metagenome 3300002727 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection B1 DOE Joint Genome Institute (JGI) 3300002727 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.534762 -107.782602 105275472 232174 231 2 372 3 SRX1990956 Unrestricted 0.0 Metagenome 3300038443 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 DOE Joint Genome Institute (JGI) 3300038443 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 37.9315 -122.0212 2559506045 4202199 759 121 1154 198 Unrestricted 21.14 Metagenome 2088090002 *Microbiome Permanent Draft Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNA Beijing Genomics Institute (BGI), Lifesequencing S.L. 2088090002 Metagenome Analysis Not Assembled released per JGI data release policy No Yes manuel.fernandez@eez.csic.es Fernandez-Lopez, Manuel No Host-associated Plants Rhizosphere Roots Soil Quercus rhizosphere 36.96213 -3.41928 64513196 181237 76 9 195 0 0.0 Metagenome 3300065483 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Abby Road, Pacific Northwest, WA, USA - ABBY_023-M-20170607-COMP-DNA1 re-annotation Battelle Memorial Institute 3300065483 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.76243 -122.33033 18121936 57615 64 3 116 5 0.0 Metagenome 3300024413 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 21D DOE Joint Genome Institute (JGI) 3300024413 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 270900706 570831 174 13 268 23 SRX4457541 Unrestricted 19.59 Metagenome 3300003098 *Microbiome Permanent Draft Marine microbial communities from surface seawater at Gulf of Maine Marine microbial communities from surface seawater at Gulf of Maine 3300003098 Metagenome Analysis Celera Assembler v. 6.0 Made public because these are downloaded from Genbank No Yes jheidelb@usc.edu Heidelberg JF Yes 22050608 Environmental Aquatic Oceanic Marine Photic zone Marine 43.14 -68.33 5278992 8597 1 0 1 0 0.0 Metagenome 3300028300 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Organic Lake, Antarctica - Site 233 with 0.8UM filter - spades J. Craig Venter Institute 3300028300 Metagenome Analysis Spades v. 3.11.1 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli Yes 21124488 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 11704153 20665 14 1 11 2 0.0 Metagenome 3300047455 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_170208.NP1 DOE Joint Genome Institute (JGI) 3300047455 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 324780554 679696 342 47 566 100 Unrestricted 8.26 Metagenome 3300013882 *Microbiome Permanent Draft Microbial communities from methanogenic microcosms from oil petroleum samples laboratory microbial enrichments from Reconcavo Basin petroleum reservoir, Newcastle Upon Tyne, UK - Enrich 2 Enrich 2 UNIVERSIDADE DE SAO PAULO 3300013882 Metagenome Analysis METASPADES k=79 No Yes inatalia.sierra@gmail.com Isabel Natalia Sierra Garcia No Engineered Lab enrichment Anaerobic media Defined media Unclassified Laboratory microcosms 54.97825278 -1.61778056 35595108 57888 47 0 42 0 0.0 Metagenome 3300006082 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS907_Anemone_DNA Marine Biological Laboratory 3300006082 Metagenome Analysis CLC genomics wb7 released by Caroline Fortunato No Yes cfortunato@mbl.edu, cfortunato@gmail.com; randerson@carleton.edu; elks@mit.edu Caroline Fortunato, Caroline Fortunato; Rika Anderson; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933231 -130.013645 343028848 898291 173 26 391 41 0.0 Metagenome 3300026248 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Louisiana-East Texas, USA - DC3-131 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026248 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 29091819 93129 96 8 173 16 SRX2770437 Unrestricted 0.0 Metagenome 3300058131 *Microbiome Permanent Draft Lake microbial communities from Canada Sediment microbial communities from the Mixedwood Plains Ecozone, Canada - bottom sediment 08-148 metaSPAdes Genome Quebec 3300058131 Metagenome Analysis SPAdes v. 3.11.1 metaSPAdes mode Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Sediment 44.49841 -76.408316 1088318755 3041978 518 12 1104 18 0.0 Metagenome 3300027133 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepB_8h DOE Joint Genome Institute (JGI) 3300027133 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 120439775 245822 116 10 196 16 SRX5245174 Unrestricted 17.54 Metagenome 3300040126 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 076_R1_022417 University of Maryland 3300040126 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.58763 19.0298 11266572 26325 30 3 47 5 0.0 Metagenome 3300021068 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 100m 12015 DOE Joint Genome Institute (JGI) 3300021068 Metagenome Analysis spades v. 3.10.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.6907 -122.3448 534333267 1178341 435 95 684 168 SRX4010484 Unrestricted 28.5 Metagenome 3300055722 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.17C.7 SIP fraction DOE Joint Genome Institute (JGI) 3300055722 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 225385997 404928 81 25 161 40 Unrestricted 39.19 Metagenome 3300070377 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_002-O-20180711-COMP-DNA1 3300070377 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 30759591 95512 77 9 161 21 0.0 Metagenome 3300019888 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - L1c2 DOE Joint Genome Institute (JGI) 3300019888 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.8924 -106.9111 578118880 1106312 302 10 528 18 SRX3958809, SRX3958808 Unrestricted 0.0 Metagenome 3300029050 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 276_M Beijing Genomics Institute (BGI) 3300029050 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 155339999 197541 113 0 186 0 ERX491066 0.0 Metagenome 3300030324 *Microbiome Permanent Draft Activated sludge microbial communities from CSTR anaerobic reactor in Belvaux, Luxembourg Activated sludge microbial communities from CSTR anaerobic reactor in Belvaux, Luxembourg - CSTR_M44 Luxembourg Institute of Science and Technology 3300030324 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Bioreactor Unclassified Anaerobic Unclassified Activated sludge 49.508281 5.943742 30312930 51524 55 0 81 0 0.0 Metagenome 3300009092 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG DOE Joint Genome Institute (JGI) 3300009092 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 921275276 1946391 2774 67 4880 115 SRX3203369 Unrestricted 0.0 Metagenome 3300056615 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.5C.13 SIP fraction DOE Joint Genome Institute (JGI) 3300056615 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 202158817 364114 182 12 316 26 Unrestricted 13.95 Metagenome 3300042474 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Nov2002-rr0690 DOE Joint Genome Institute (JGI) 3300042474 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 523959210 845910 205 26 275 24 Unrestricted 18.84 Metagenome 3300041779 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - A_36_wk_2 DOE Joint Genome Institute (JGI) 3300041779 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9841 -106.97 161444863 481750 301 23 497 45 SRX14808249 Unrestricted 6.98 Metagenome 3300042293 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Apr2012-rr0403 DOE Joint Genome Institute (JGI) 3300042293 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 730560648 1118178 177 106 251 154 Unrestricted 18.65 Metagenome 3300030063 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces viral communities from healthy individual in Houston, USA - MG100117 University of Michigan 3300030063 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 29.76 -95.37 2605684 5762 11 0 18 0 0.0 Metagenome 3300013992 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway plastic -P00794 Weill Cornell Medical College 3300013992 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Plastic surface city subway plastic 40.83 -73.92 16145373 22314 7 0 17 1 SRX822760 0.0 Metagenome 3300013374 *Microbiome Permanent Draft Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong - Treated_water_201107 University of Hong Kong 3300013374 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Drinking water Freshwater Unclassified Drinking water treatment plant 18306510 28685 7 3 8 7 SRX390513 0.0 Metagenome 3300024979 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 4_LOW4 (SPAdes) DOE Joint Genome Institute (JGI) 3300024979 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 146542960 271254 83 0 107 0 SRX2719627 Unrestricted 0.0 Metagenome 3300044748 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 217-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044748 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.8576 -107.0917 480075267 1431052 699 32 1337 70 Unrestricted 7.47 Metagenome 3300001731 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-37 DOE Joint Genome Institute (JGI) 3300001731 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 50.0 -145.0 76683598 160334 28 0 54 2 Unrestricted 0.0 Metagenome 3300001976 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7 DOE Joint Genome Institute (JGI) 3300001976 Metagenome Analysis Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 185557620 541838 607 21 1095 47 SRX1990946 Unrestricted 0.0 Metagenome 3300069498 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_005-M-20140325-COMP-DNA1 re-annotation Argonne National Laboratory 3300069498 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 18844014 50300 58 4 110 5 ERX2134052 0.0 Metagenome 3300027961 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S1_30_40 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027961 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37229149 -119.2718121 368944861 865375 248 2 471 5 SRX2523174 Unrestricted 0.0 Metagenome 3300014721 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 549_B Beijing Genomics Institute (BGI) 3300014721 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 10393245 10661 5 0 5 0 ERX491201 0.0 Metagenome 3300046010 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater viral communities from Lake Mendota, Wisconsin, United States - ME_2020-10-19_15m_Virus_AB DOE Joint Genome Institute (JGI) 3300046010 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 755398223 1554625 143 20 211 30 Unrestricted 45.97 Metagenome 3300027041 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N2_30_40 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027041 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380273 -119.2723038 100879456 318925 223 10 444 19 SRX2523175 Unrestricted 0.0 Metagenome 3300019481 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Sao Paulo, Brazil - Zoo compost C15 Center for Advanced Technologies in Genomics, Sao Paulo University 3300019481 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Engineered Solid waste Composting Zoo waste Unclassified compost -23.651072 -46.620675 17192365 42931 24 0 27 1 0.0 Metagenome 3300025304 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025304 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 461935468 694623 149 5 192 4 SRX2770672 Unrestricted 0.0 Metagenome 3300019998 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - H3m1 DOE Joint Genome Institute (JGI) 3300019998 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9825 -107.0101 70839924 172604 177 17 391 32 SRX3944464, SRX3944463 Unrestricted 0.0 Metagenome 3300035395 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from Middle Island sinkhole, Lake Huron, Michigan, United States - MIS.2016.202 reassembly DOE Joint Genome Institute (JGI) 3300035395 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes macgregb@umn.edu; sgrim@umich.edu Barbara MacGregor; Sharon Grim No Environmental Aquatic Lake Freshwater Sediment microbial mat 45.1993 -83.3279 225241954 274989 92 8 110 9 SRX7582715 0.0 Metagenome 3300040390 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_053-M-20170621-COMP-DNA1 Battelle Memorial Institute 3300040390 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 5561435 15969 57 9 87 17 0.0 Metagenome 3300025243 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0759 (SPAdes) DOE Joint Genome Institute (JGI) 3300025243 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -32.81 12.77 121405408 242613 152 1 213 1 SRX1982979 Unrestricted 0.0 Metagenome 3300050463 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - W13NW16 DOE Joint Genome Institute (JGI) 3300050463 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 167254222 310401 214 42 410 65 Unrestricted 16.8 Metagenome 3300022302 *Microbiome Permanent Draft Anaerobic microbial community of wastewater bioreactor in Changsha, Hunan, China Activated sludge microbial communities from anaerobic bioreactor in Hunan University, Changsha, China - 3 Beijing Novogene Bioinformatics Technology Co., Ltd 3300022302 Metagenome Analysis IDBA v.1.1.1 released by JGI data releasing policy No Yes yuezheng@uw.edu Yue Zheng No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 28.2127 113.0106 568117038 1063962 526 3 810 6 0.0 Metagenome 3300012551 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100328 University of Pennsylvania 3300012551 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 10167169 21659 15 10 29 8 SRX756329 0.0 Metagenome 3300022423 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1OPP1 JM94 AGRF 3300022423 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 60065302 95219 43 0 68 1 0.0 Metagenome 3300030511 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Bulk soil microbial communities from Mexico - Amatitan (Am) metaG (v2) (version 2) DOE Joint Genome Institute (JGI) 3300030511 Metagenome Analysis spades v. 3.12.0 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Environmental Terrestrial Agricultural land Soil Unclassified Soil 21.053 -103.902 489358821 1343249 1203 46 2192 81 SRX6855688 Unrestricted 8.62 Metagenome 3300017732 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 38 SPOT_SRF_2012-12-11 DOE Joint Genome Institute (JGI) 3300017732 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 260855072 639126 59 12 92 25 SRX7207489, SRX7207490 Unrestricted 0.0 Metagenome 2017108002 *Microbiome Draft Bioreactor Anammox bacterial community from Nijmegen, The Netherlands Bioreactor Anammox bacterial community from Nijmegen, The Netherlands - Scalindua species enirchment v1 DOE Joint Genome Institute (JGI) 2017108002 Metagenome Analysis released based on JGI ITS No Yes sgtringe@lbl.gov, m.jetten@science.ru.nl; m.jetten@microbiology.ru.nl Susannah Tringe, Mike Jetten; mike jetten Yes 22103529 Engineered Wastewater Nitrogen removal Nutrient removal Anammox Bioreactor 51.842 5.858 20878222 22586 13 0 10 0 Unrestricted 0.0 Metagenome 3300007158 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_10_12 DOE Joint Genome Institute (JGI) 3300007158 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 22175348 44519 53 0 90 0 SRX2752461 Unrestricted 0.0 Metagenome 3300034030 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 48SNC DOE Joint Genome Institute (JGI) 3300034030 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological biocrust 34.7856 -115.66 316244874 692006 435 20 790 31 SRX7621462 Unrestricted 8.25 Metagenome 2170459023 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - FA3 (control condition) 454 Life Sciences 2170459023 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.804241 -0.372114 430493607 1223552 411 19 851 24 0.0 Metagenome 3300040161 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_034-M-20160811-COMP-DNA1 Battelle Memorial Institute 3300040161 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 8762046 26094 34 6 66 5 0.0 Metagenome 3300002195 *Microbiome Permanent Draft Freshwater microbial community from Sao Paulo Zoo Lake, Brazil Freshwater microbial communities from San Paulo Zoo lake, Brazil - AUG 2013 3300002195 Metagenome Analysis SoapDeNovo released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Lake -23.651072 -46.620675 94755924 283381 4 3 33 4 0.0 Metagenome 3300046765 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from White River, Indiana, USA - NASQAN2011_172 DOE Joint Genome Institute (JGI) 3300046765 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.4897 -87.55 7120072 22721 35 18 78 24 Unrestricted 0.0 Metagenome 3300028009 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE6 DOE Joint Genome Institute (JGI) 3300028009 Metagenome Analysis spades v. 3.11.1 Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 59.997 10.7902 16420698 47441 94 41 201 83 SRX5271697 Unrestricted 7.39 Metagenome 3300007634 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1555A-02 DOE Joint Genome Institute (JGI) 3300007634 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2024 -123.9409 337512030 658226 333 21 516 17 SRX2753737 Unrestricted 0.0 Metagenome 3300046718 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 soil DOE Joint Genome Institute (JGI) 3300046718 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121586 -123.269608 5.21 1449937707 2253046 380 18 608 28 Unrestricted 14.08 Metagenome 3300069474 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_004-M-20140117-COMP-DNA1 re-annotation Argonne National Laboratory 3300069474 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 6877879 20894 49 3 101 7 ERX2133942 0.0 Metagenome 3300056744 *Microbiome Permanent Draft Soil microbial communities from various environments and locations in the USA Soil microbial communities from farm land in Prosser, Washington, USA - PRS1_TOP DOE Joint Genome Institute (JGI) 3300056744 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nancy.hess@pnnl.gov Nancy Hess No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.2517 -119.7287 1377151842 2604528 797 40 1507 72 Unrestricted 36.49 Metagenome 3300031643 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-30 DOE Joint Genome Institute (JGI) 3300031643 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh sediment 42.722 -70.847 419527777 749240 322 6 491 13 SRX6458651 Unrestricted 22.45 Metagenome 3300044960 *Microbiome Permanent Draft Microbial mat bacterial communities from hot springs in Waikite Valley, Taupo Volcanic Zone, New Zealand Microbial mat bacterial communities from hot spring in Waikite Valley, New Zealand - LMW_ETR_NZ_2018_Waikite_6_2b DOE Joint Genome Institute (JGI) 3300044960 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes LMWARD@post.harvard.edu Lewis Ward No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats microbial mat -38.3276 176.3016 998916686 1314326 449 12 579 14 Unrestricted 37.4 Metagenome 3300020356 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000686 (ERX555994-ERR599157) CEA Genoscope 3300020356 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -8.896 -140.2861 366457724 946985 303 16 583 27 0.0 Metagenome 3300014085 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_088 The George Washington University (GWU) 3300014085 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 11383336 24344 27 6 31 5 SRX655726 0.0 Metagenome 3300013398 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100186 University of Pennsylvania 3300013398 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 2988678 3992 1 2 5 6 SRX756347 0.0 Metagenome 3300069293 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Konza Prairie Bio Station, Kansas, USA - KONZ_045-M-20210721-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069293 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Grasslands Soil Unclassified Terrestrial soil 39.103827 -96.561811 4222123379 8616298 1434 35 2583 59 0.0 Metagenome 3300000818 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 28MAY2007 hypolimnion v4 (version 6) DOE Joint Genome Institute (JGI) 3300000818 Metagenome Analysis released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 1202517 1234 0 0 0 0 Unrestricted 0.0 Metagenome 3300045553 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Cordillera ecozone, Canada - Lake 13-517 Genome Quebec 3300045553 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 60.062737 -128.680252 1038848788 2381052 464 173 705 335 0.0 Metagenome 3300050215 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Leeds, Wisconsin, USA - 27_777_WI_DR_0cm_c3_T1_16O DOE Joint Genome Institute (JGI) 3300050215 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 43.30485 -89.3309 693679444 1224343 307 9 560 12 Restricted 14.62 Metagenome 3300029565 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI022006-90 Beijing Genomics Institute (BGI) 3300029565 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 178492483 233861 153 0 226 0 0.0 Metagenome 3300029359 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 048_3_11_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029359 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 214729136 303644 294 0 394 1 0.0 Metagenome 3300022908 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L221-509R-5 DOE Joint Genome Institute (JGI) 3300022908 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 468890989 1039560 516 73 922 111 SRX4801150 Unrestricted 11.61 Metagenome 3300066283 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_046-O-20170621-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066283 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 5955975 19573 52 11 92 28 0.0 Metagenome 3300041972 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego desert, Southern California, United States - 2020_S3 DOE Joint Genome Institute (JGI) 3300041972 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified Soil 33.3052 -116.2547 432037925 1105554 576 13 1008 15 SRX14810458 Unrestricted 7.07 Metagenome 3300011483 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01144 Weill Cornell Medical College 3300011483 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.67 -73.9 22240365 26742 11 0 26 0 SRX823099 0.0 Metagenome 3300006747 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 160218816 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006747 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 118798596 163654 109 0 172 0 0.0 Metagenome 3300013153 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100707 University of Pennsylvania 3300013153 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 18214861 37708 25 7 48 14 SRX756143 0.0 Metagenome 3300042891 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME01Nov2007-rr0907 DOE Joint Genome Institute (JGI) 3300042891 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 812855906 1303231 291 41 413 48 Unrestricted 25.22 Metagenome 3300000865 *Microbiome Permanent Draft Hot springs sediment microbial communities from Tengchong, China, analyzing PIRE metagenomes Hot spring sediment from Gongxiaoshe in Tengchong, China Stanford University 3300000865 Metagenome Analysis released per Supratim Yes Yes brian.hedlund@unlv.edu, brian.hedlund@unlv.edu; eaeloefadrosh@lbl.gov Brian P. Hedlund, Brian Hedlund; Emiley Eloe-Fadrosh No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot springs sediment 25.44012 98.44081 7.29 71805996 93343 27 0 50 0 0.0 Metagenome 3300025448 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_13_100 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025448 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 212452748 378070 112 1 204 1 SRX3003642 Unrestricted 0.0 Metagenome 3300029518 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005362-18 Beijing Genomics Institute (BGI) 3300029518 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 169493774 217395 120 0 205 0 0.0 Metagenome 3300049631 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_1_B DOE Joint Genome Institute (JGI) 3300049631 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 85965082 116114 57 0 81 0 Restricted 151.91 Metagenome 3300050268 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_23 DOE Joint Genome Institute (JGI) 3300050268 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.491 160.905 520407478 866502 55 46 82 77 SRX18235912 Restricted 22.78 Metagenome 3300032287 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 17-073 Genome Quebec 3300032287 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.284702 -68.869635 588992208 1275372 257 59 489 133 0.0 Metagenome 3300024218 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant dump, University of Wisconsin, Madison, United States - 2B200A (version 2) DOE Joint Genome Institute (JGI) 3300024218 Metagenome Analysis spades v. 3.11.1 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0758 -89.4125 94898862 125727 56 4 72 9 SRX4821870 Unrestricted 0.0 Metagenome 3300005611 *Microbiome Draft Saline water and sediment microbial community from Etoliko Lagoon, Greece Saline surface water microbial communities from Etoliko Lagoon, Greece DOE Joint Genome Institute (JGI) 3300005611 Metagenome Analysis SPADES v3.5.0 released Yes Yes nnivanova@lbl.gov, NNIvanova@lbl.gov Natasha Ivanova, Natalia Ivanova No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline water and sediment 38.4825 21.315 129022987 258815 89 6 149 7 0.0 Metagenome 7000000341 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 160319967 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000341 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 12642193 15901 0 0 0 0 0.0 Metagenome 3300005476 *Microbiome Permanent Draft Hoatzin crop microbial communities from Cojedes, Venezuela Hoatzin crop microbial communities from Cojedes, Venezuel, sample from Protozoan 21 v2 (version 2) DOE Joint Genome Institute (JGI) 3300005476 Metagenome Analysis Newbler and/or Velvet released based on JGI ITS Yes Yes sgtringe@lbl.gov, maria.dominguez1@upr.edu; fgodoyvitorino@gmail.com Susannah Tringe, Maria Gloria Dominguez-Bello; Filipa Godoy Vitorino No Host-associated Birds Esophagus Digestive system Crop Hoatzin crop 8.956944 -68.299167 9679612 32222 13 29 37 43 Unrestricted 0.0 Metagenome 3300046319 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_74 DOE Joint Genome Institute (JGI) 3300046319 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9236 -106.9499 204138222 569990 711 5 1402 9 Restricted 0.0 Metagenome 3300013799 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS848 IDBA reassembly Marine Biological Laboratory 3300013799 Metagenome Analysis reassembly with IDBA_UD released by JGI data releasing policy No Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow hydrothermal vent diffuse flow 18.376929 -81.797906 6.65 135175138 288842 183 9 300 12 0.0 Metagenome 3300022335 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Garden Lake, Rottnest Island (WA - Australia) - GL1GP3 JM12 AGRF 3300022335 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.995604 115.536873 25423414 53450 34 1 55 0 0.0 Metagenome 3300003074 *Microbiome Finished Human fecal viral communities from the Genome Institute of Singapore, of healthy adults Human fecal microbial communities from the Genome Institute of Singapore - Sample 3 3300003074 Metagenome Analysis Made public because these are downloaded from Genbank No Yes ruanyj@gis.a-star.edu.sg Yijun Ruan Yes 16336043 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 32.716586 -117.162455 466613 1906 125 38 324 34 0.0 Metagenome 3300017705 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - Lowphox_08 viral metaG DOE Joint Genome Institute (JGI) 3300017705 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -20.1 -70.419 166835551 403709 34 0 54 0 SRX7206582 Unrestricted 12.92 Metagenome 3300046558 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere DOE Joint Genome Institute (JGI) 3300046558 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5882 -123.1925 701185273 1103087 350 66 480 87 Unrestricted 17.0 Metagenome 3300040933 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - FS5_Cellobiose_2 DOE Joint Genome Institute (JGI) 3300040933 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.5324 -110.7974 156234191 263483 84 0 117 0 SRX9633566 Unrestricted 456.77 Metagenome 3300000122 *Microbiome Draft Marine microbial communities from chronically polluted sediments in four geographic locations Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site OR sample ARG 04_12.3m DOE Joint Genome Institute (JGI) 3300000122 Metagenome Analysis released based on JGI ITS Yes Yes hdionisi@cenpat.edu.ar Hebe Dionisi No Environmental Aquatic Intertidal zone Marine Sediment Marine -54.80407 -68.288208 90812053 280565 173 44 309 60 Unrestricted 0.0 Metagenome 3300003790 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 DOE Joint Genome Institute (JGI) 3300003790 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 262858972 458525 166 6 229 4 SRX2770673 Unrestricted 0.0 Metagenome 3300024265 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00157 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300024265 Metagenome Analysis spades v. 3.11.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Oceanic Marine Sediment Deep subsurface 1.759 96.774 1387437190 3241927 949 0 1631 10 SRX2524380 Unrestricted 0.0 Metagenome 3300025189 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0144 (SPAdes) DOE Joint Genome Institute (JGI) 3300025189 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 14.52 -26.0 26552052 52782 38 11 70 17 SRX1983309 Unrestricted 0.0 Metagenome 3300004054 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (v2) (version 2) DOE Joint Genome Institute (JGI) 3300004054 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 713220279 2069654 541 133 958 299 SRX2565054, SRX2565055, SRX2565056 Unrestricted 0.0 Metagenome 3300046086 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_44 DOE Joint Genome Institute (JGI) 3300046086 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9802 -106.9905 90431959 306223 373 13 705 20 Unrestricted 0.0 Metagenome 3300034339 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Marine sediment microbial communities from Algarve, Portugal - SD02 Molecular Research LP (MR DNA) 3300034339 Metagenome Analysis Metawrap workflow v. 1.0.11 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Environmental Aquatic Oceanic Marine Sediment marine sediment 36.979778 -7.989111 1027764 1180 1 1 8 3 0.0 Metagenome 3300029437 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 015_6_4_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029437 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 252700959 329437 213 0 303 0 0.0 Metagenome 3300025167 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025167 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 1344589407 2874124 1173 35 2197 75 SRX1991816 Unrestricted 0.0 Metagenome 3300027926 *Microbiome Permanent Draft Deep subsurface rock core microbial communities from Deccan traps, Ukhalu, Maharashtra, India Deep subsurface rock core microbial communities from Deccan traps, Ukhalu, Maharashtra, India - U6_55 trimmed_55_20 Marine Biological Laboratory 3300027926 Metagenome Analysis Spades v. 3.11.1 released by JGI data releasing policy No Yes avishekdutta14@gmail.com; psar@hijli.iitkgp.ernet.in Avishek Dutta; Pinaki Sar No Environmental Terrestrial Rock Deep subsurface Unclassified Deep subsurface rock core 17.125867 73.869133 882616630 2138548 236 29 530 78 0.0 Metagenome 3300025841 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-13 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025841 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 603379185 1150877 719 19 1169 33 SRX3198187 Unrestricted 0.0 Metagenome 3300053077 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere DOE Joint Genome Institute (JGI) 3300053077 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1214 -123.2694 1171846199 1964248 411 30 647 53 Unrestricted 0.0 Metagenome 3300042981 *Microbiome Permanent Draft Soil microbial communities from Wonju, South Korea Soil microbial communities from Wonju, South Korea - P2 Macrogen Inc 3300042981 Metagenome Analysis MEGAHIT v. 2.4.2 No Yes mistiers2@gmail.com Jin-Kyung Hong No Environmental Terrestrial Unclassified Soil Unclassified Soil 37.27112 127.904301 388274927 449170 72 11 88 11 0.0 Metagenome 3300007930 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 764508039 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007930 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 1097385 2984 3 0 9 0 SRX024216 0.0 Metagenome 3300015291 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_31MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015291 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 139118823 253381 10 30 31 30 SRX3922905 Unrestricted 10.58 Metagenome 3300048433 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_110713.NP2 DOE Joint Genome Institute (JGI) 3300048433 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 593283962 1260784 345 75 492 113 Unrestricted 10.93 Metagenome 3300044664 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Leaf microbial communities from farm grass in Deerfield, Massachusetts, United States - Orchardgrass_Phyllosphere_Control2 DOE Joint Genome Institute (JGI) 3300044664 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 42.4788 -72.5788 1371395338 2045309 231 278 387 405 Unrestricted 18.58 Metagenome 3300032269 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada - Lake 06-126 Genome Quebec 3300032269 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.99124 -74.02811 750751778 1585938 425 90 751 196 0.0 Metagenome 3300000411 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3 v4 (version 4) DOE Joint Genome Institute (JGI) 3300000411 Metagenome Analysis released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300014766 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_114 The George Washington University (GWU) 3300014766 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 98653097 152842 108 4 141 8 SRX656249 0.0 Metagenome 3300040099 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONZ_004-M-20170710-COMP-DNA1 Battelle Memorial Institute 3300040099 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.10077 -96.56309 12285972 35867 53 7 107 9 0.0 Metagenome 3300000676 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 27 DOE Joint Genome Institute (JGI) 3300000676 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 5585350 16893 32 0 52 0 SRX4340640 Unrestricted 0.0 Metagenome 3300029758 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 008_6_1_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029758 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 159734658 218388 144 0 230 0 0.0 Metagenome 3300028155 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_18SEP2017_LD1 DOE Joint Genome Institute (JGI) 3300028155 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 95000953 191703 86 77 102 108 SRX5345916 Unrestricted 13.44 Metagenome 3300027206 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027206 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.234 -123.9135 147749216 319356 206 24 296 37 SRX2753606 Unrestricted 0.0 Metagenome 3300017939 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG DOE Joint Genome Institute (JGI) 3300017939 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 4.2396 -73.2024 776161852 1812096 800 4 1544 10 SRX3936915 Unrestricted 4.66 Metagenome 3300054057 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_11_40 re-annotation DOE Joint Genome Institute (JGI) 3300054057 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 399510415 822127 173 0 299 0 SRX3003288 0.0 Metagenome 3300069315 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dead Lake, Ozarks Complex, AL, USA - DELA_001-M-20160825-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069315 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 32.54172 -87.80389 4723279 15918 53 1 95 1 0.0 Metagenome 3300012917 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG DOE Joint Genome Institute (JGI) 3300012917 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 1897940603 3929692 1035 32 1952 60 SRX3373051 Unrestricted 0.0 Metagenome 3300012346 *Microbiome Permanent Draft Freshwater microbial communities from rivers and streams along an organic matter gradient associated with agriculture in Ontario, Canada Freshwater microbial communities from Emily Creek, Ontario, Canada - S29 Molecular Research LP (MR DNA) 3300012346 Metagenome Analysis metaSPAdes released by JGI data releasing policy No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lotic Freshwater Unclassified Freshwater 44.46181 -78.6228 8.01 227339983 739258 62 5 97 13 0.0 Metagenome 3300001006 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0758 DOE Joint Genome Institute (JGI) 3300001006 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -32.81 12.77 9110632 16795 34 16 63 19 SRX1982968 Unrestricted 0.0 Metagenome 3300048040 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - EG-13_pre-inc (version 2) DOE Joint Genome Institute (JGI) 3300048040 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3533 19.0466 221351306 464201 327 15 558 27 Restricted 0.0 Metagenome 3300003536 *Microbiome Permanent Draft Petroleum reservoir microbial communities from Reconcavo Basin, Brazil, analyzing oil degradation Petroleum reservoir microbial communities from Reconcavo Basin, Brazil, analyzing oil degradation - Bahia-well BA-2 Water 3300003536 Metagenome Analysis de novo assembly with CLC genomics released by JGI data releasing policy No Yes inatalia.sierra@gmail.com Isabel Natalia Sierra Garcia No Environmental Terrestrial Produced water Oil reservoir Unclassified Petroleum reservoir -12.2 -38.11 106668796 198109 38 2 99 3 0.0 Metagenome 3300036979 *Microbiome Permanent Draft Sediment microbial communities from various lakes in Switzerland Sediment microbial communities from Lake Greifen, Zurich, Switzerland - LG_7 DOE Joint Genome Institute (JGI) 3300036979 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mark.lever@usys.ethz.ch Mark Alexander Lever No Environmental Aquatic Lake Freshwater Sediment sediment 47.3519 8.6747 602970047 1007158 349 12 551 16 SRX8398650 Unrestricted 14.53 Metagenome 3300050158 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D10_SEK1_4_to_RHK1 DOE Joint Genome Institute (JGI) 3300050158 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.154 -124.211 594173941 913602 313 139 556 211 Unrestricted 20.55 Metagenome 3300018085 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG DOE Joint Genome Institute (JGI) 3300018085 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 4.0627 -73.195 2140457576 4547748 1229 13 2119 18 SRX3936786 Unrestricted 5.42 Metagenome 3300013263 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100492 University of Pennsylvania 3300013263 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17045553 37785 20 0 30 0 SRX756506 0.0 Metagenome 3300069368 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Woodworth, Northern Plains, ND, USA - WOOD_003-M-20140702-COMP-DNA1 re-annotation Argonne National Laboratory 3300069368 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12823 -99.24136 5991029 16982 37 5 86 11 ERX2134002 0.0 Metagenome 3300027388 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027388 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 194835489 491470 264 22 538 30 SRX1986446, SRX2021679, SRX1986447 Unrestricted 0.0 Metagenome 3300012658 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100654 University of Pennsylvania 3300012658 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 38544108 82076 25 0 36 0 SRX756440 0.0 Metagenome 3300070336 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_044-O-20180724-COMP-DNA1 3300070336 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 197336186 555821 263 39 546 79 0.0 Metagenome 3300038457 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300038457 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0473 724071354 1186393 190 8 289 11 SRX8137027, SRX8137026 Unrestricted 0.0 Metagenome 3300025092 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Little Hot Creek, USA to study Microbial Dark Matter (Phase II) - LHC4sed_matched (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025092 Metagenome Analysis spades v. 3.11.1 Yes Yes brian.hedlund@unlv.edu; rstepanauskas@bigelow.org Brian Hedlund; Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring 37.6906 -118.8442 6.83 233126515 433001 139 0 180 0 SRX2753913 Unrestricted 0.0 Metagenome 2189573004 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - FG2 (Nitrogen) 454 Life Sciences 2189573004 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.804241 -0.372114 373050939 1024627 389 2 694 16 0.0 Metagenome 3300035418 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Leptogorgia sarmentosa from Algarve, Portugal - LS08H Euk Molecular Research LP (MR DNA) 3300035418 Metagenome Analysis Metawrap workflow v. 1.0.5 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 41438716 43116 0 1 0 2 0.0 Metagenome 2140918016 *Microbiome Permanent Draft Marine microbial communities from Monterey Bay, California, USA, from BMFC electrogenic anode BMFC anode metagenome Harvard University 2140918016 Metagenome Analysis raw reads released per JGI data release policy No Yes psong@oeb.harvard.edu Pengfei Song No Environmental Aquatic Cold seeps Marine Unclassified Marine 36.77667 -122.085 61914740 98463 158 2 237 0 0.0 Metagenome 3300002201 *Microbiome Permanent Draft Freshwater microbial community from Sao Paulo Zoo Lake, Brazil Freshwater microbial communities from San Paulo Zoo lake, Brazil - SEP 2013 3300002201 Metagenome Analysis SoapDeNovo released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Lake -23.651072 -46.620675 119151478 351397 4 1 27 4 0.0 Metagenome 3300071140 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_005-O-20200719-COMP-DNA1 3300071140 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 56568770 153382 127 47 237 65 0.0 Metagenome 3300001843 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM34, ROCA_DNA218_2.0um_bLM_C_2b 3300001843 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Lotic Freshwater Unclassified Marine plankton -1.519367 -48.91795 124948480 274878 48 16 109 29 0.0 Metagenome 3300032005 *Microbiome Permanent Draft Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 DOE Joint Genome Institute (JGI) 3300032005 Metagenome Analysis spades v. 3.12.0 Yes Yes agaudin@ucdavis.edu Amelie Gaudin No Host-associated Plants Rhizosphere Roots Soil rhizosphere 38.5 -121.7 4562966121 11585705 2504 128 4198 228 SRX5799629 Unrestricted 8.45 Metagenome 3300037834 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Cyanosarcina radialis HA8281-LM2 and co-occurring heterotrophs from damp rock surface from Makauwahi cave, Hawaii, United States - 20190225_14 DOE Joint Genome Institute (JGI) 3300037834 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Damp rock surface 21.8883 -159.4188 109667627 143748 35 3 42 5 SRX9168370 Unrestricted 105.12 Metagenome 3300015059 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01224 Weill Cornell Medical College 3300015059 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.69 -73.98 19387780 29701 13 0 22 0 SRX823179 0.0 Metagenome 3300006026 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA DOE Joint Genome Institute (JGI) 3300006026 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 554060335 1503373 336 10 601 18 SRX2864166 Unrestricted 0.0 Metagenome 3300026030 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D1_rd (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026030 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.197227 -122.010124 64803763 165585 164 0 281 4 SRX7181187 Unrestricted 0.0 Metagenome 3300039135 *Microbiome Permanent Draft Freshwater microbial communities from various watersheds in Southwestern British Columbia, Canada Freshwater microbial communities from Southwestern British Columbia, Canada - PDS_083 University of British Columbia 3300039135 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 49.0 -123.0 17340110 38651 45 0 70 0 0.0 Metagenome 3300050393 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BT18-02_D100 (version 3) DOE Joint Genome Institute (JGI) 3300050393 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3555 19.0492 237623235 334114 98 22 136 32 Restricted 0.0 Metagenome 3300022770 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA3 Version 2 University of New South Wales 3300022770 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 34679322 50143 19 0 29 1 0.0 Metagenome 3300038738 *Microbiome Permanent Draft Soil bacterial communites from Shixing, China to study cellulose degradation Soil microbial communites from Shixing, China - F1RT Beijing Genomics Institute (BGI) 3300038738 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Unclassified Soil Unclassified Soil 24.918333 114.132778 30834240 36659 26 0 42 0 0.0 Metagenome 3300013826 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01147 Weill Cornell Medical College 3300013826 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.9 28775320 48227 25 0 31 0 SRX823102 0.0 Metagenome 3300040460 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 080B_R1 University of Maryland 3300040460 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.5163 18.98259 3379144 7543 9 0 11 2 0.0 Metagenome 3300002921 *Microbiome Permanent Draft Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease - 2012_BI_H8 3300002921 Metagenome Analysis IDBA-UD + SOAPdenovo + GAA made public per user request (Enrique Zozaya - 05/02/16 email) No Yes t.thomas@unsw.edu.au Torsten Thomas Yes 28419766 Host-associated Algae Unclassified Red algae Unclassified Delisea pulchra -33.59 151.13 1045660305 4221667 243 115 531 148 0.0 Metagenome 3300061132 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIF4SW no PMA treatment Jet Propulsion Laboratory, California Institute of Technology 3300061132 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 29701798 55183 10 5 16 10 SRX3808543, SRX2249356, SRX3808516, SRX2249359 0.0 Metagenome 3300028772 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E3_1 DOE Joint Genome Institute (JGI) 3300028772 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 551908238 1215469 593 85 881 141 SRX5355853 Unrestricted 0.0 Metagenome 3300047301 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Yukon River, Alaska, USA - Yukon 2004-1 DOE Joint Genome Institute (JGI) 3300047301 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 61.9333 -162.8666 405407912 815266 244 43 367 42 Unrestricted 26.29 Metagenome 3300025257 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP-134 (SPAdes) DOE Joint Genome Institute (JGI) 3300025257 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es; mbsulli@gmail.com Silvia G. Acinas; Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 18.3272 -52.639 157178492 321116 110 0 160 0 SRX4924714 Unrestricted 0.0 Metagenome 3300027789 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 9/18/14 B DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027789 Metagenome Analysis spades v. 3.11.1 Yes Yes ebyoung@uwm.edu Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 937322328 1870242 529 124 797 197 SRX2748447 Unrestricted 0.0 Metagenome 3300000110 *Microbiome Draft Shipworm microbial communities from Puget Sound, Washington USA, from multiple species of wood-boring bivalves (shipworms) Microbial communities from multiple species of Shipworm: Sample from Bankia setacea gill BSg2 DOE Joint Genome Institute (JGI) 3300000110 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes distel@oglf.org Daniel Distel, Dan Distel No Host-associated Mollusca Gills Respiratory system Extracellular Shipworm 47.957498 -122.529373 540217764 1354806 12 12 22 4 Unrestricted 0.0 Metagenome 3300070813 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_045-M-20170316-COMP-DNA1 3300070813 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 30191054 92747 219 14 439 43 0.0 Metagenome 3300028218 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS375 with 0.1UM filter - spades JGI facility at Oak Ridge National Laboratory 3300028218 Metagenome Analysis Spades v. 3.11.1 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 22353199 43565 9 5 10 7 0.0 Metagenome 3300006237 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300006237 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.405765 -85.399014 5479999950 15806239 4273 271 7188 494 SRX2740079, SRX2740080 Unrestricted 0.0 Metagenome 3300043505 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime ecozone, Canada - Lake 07-234 Genome Quebec 3300043505 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.745336 -63.785165 979310682 2135980 449 121 720 229 0.0 Metagenome 3300041035 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - T4D8 IDBA-UD 60x Baseclear 3300041035 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 83126522 124476 99 4 162 3 0.0 Metagenome 3300028265 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepB_8h DOE Joint Genome Institute (JGI) 3300028265 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 109754573 250564 130 7 209 14 SRX5245416 Unrestricted 15.18 Metagenome 3300036413 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - IR.F.S.T-25 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036413 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 110585915 217526 132 4 203 6 SRX4415252, SRX7705505 Unrestricted 0.0 Metagenome 3300032159 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2) (version 2) DOE Joint Genome Institute (JGI) 3300032159 Metagenome Analysis spades v. 3.12.0 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.7658 -100.163 1541794765 3621863 1254 219 2367 414 SRX2124717 Unrestricted 0.0 Metagenome 3300023083 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L103-311B-2 DOE Joint Genome Institute (JGI) 3300023083 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 488221391 995302 517 123 883 188 SRX4797614 Unrestricted 12.5 Metagenome 3300042962 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-441 Genome Quebec 3300042962 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 52.979083 -107.813473 1353462602 3170499 413 69 631 119 0.0 Metagenome 3300023175 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG (version 2) DOE Joint Genome Institute (JGI) 3300023175 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1283846445 2524478 506 59 751 102 SRX4071581 Unrestricted 25.91 Metagenome 3300014927 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 546_4M Beijing Genomics Institute (BGI) 3300014927 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 74840501 90140 53 0 64 0 ERX491196 0.0 Metagenome 3300045964 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P15SSC1_191107_f DOE Joint Genome Institute (JGI) 3300045964 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 668433421 1119160 256 3 404 2 SRX20650986 Unrestricted 12.21 Metagenome 3300038339 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Natural salt marsh sediment microbial communities from Mersea Island, United Kingdom - S MINM 1A University of York 3300038339 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Natural salt marsh sediment 51.797167 0.920967 27362498 73876 62 0 106 0 0.0 Metagenome 3300042042 *Microbiome Permanent Draft Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - R_b24.1 Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042042 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1241 -89.1401 917067312 927560 2 8 4 12 SRX5234793 0.0 Metagenome 3300043446 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Pamunkey River, New Kent, Virginia, USA - pamunkeyriver_2019_sw_WHONDRS-S19S_0054 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043446 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 37.5728 -77.0239 803474551 1382994 335 67 487 84 Unrestricted 18.88 Metagenome 3300035537 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B2.3_Sample2.Rodeo3.Well1210 DOE Joint Genome Institute (JGI) 3300035537 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 330429457 531040 280 0 418 0 SRX8351190 Unrestricted 27.16 Metagenome 3300009304 *Microbiome Permanent Draft Anaerobic oil degrading microbial communities from River Tyne estuarine sediment Microbial communities from sediment of the River Tyne Estuary, UK - Pasteurized_176d_2 SPAdes University of Liverpool 3300009304 Metagenome Analysis SPAdes released per JGI data release policy No Yes ian.head@ncl.ac.uk, ana.suarez-suarez@ncl.ac.uk; ian.head@ncl.ac.uk Ian Head, Ana Suarez-Suarez; Ian Head No Environmental Aquatic Unclassified Sediment Unclassified sediment 54.9632021 -1.6348029 359547264 777919 189 4 320 11 0.0 Metagenome 3300055018 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_110921.NP1 DOE Joint Genome Institute (JGI) 3300055018 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 1008862963 2115539 601 97 899 148 Restricted 0.0 Metagenome 3300027767 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027767 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 51.62 -128.09 664561238 1585910 415 179 772 266 SRX2575205 Unrestricted 0.0 Metagenome 3300037327 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Unnamed Lake-6 #420 DOE Joint Genome Institute (JGI) 3300037327 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4707 78.2516 620625588 1087430 243 56 382 101 SRX9174021 Unrestricted 22.74 Metagenome 3300045044 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - Rondonia_Pasture_2_A10m DOE Joint Genome Institute (JGI) 3300045044 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Pasture Soil Agricultural land Soil -10.17 -62.833 925342076 2146791 447 7 792 17 Unrestricted 8.92 Metagenome 3300001937 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from the Equatorial Pacific Ocean - GS037 J. Craig Venter Institute (JCVI) 3300001937 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Oceanic Marine Unclassified Marine -1.9738889 -95.014725 36191958 63262 30 0 54 1 0.0 Metagenome 3300006941 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Root nodule microbial communities of legume samples collected from California, USA - Siratro red BW DOE Joint Genome Institute (JGI) 3300006941 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Host-associated Plants Nodule Roots Unclassified Root nodules 34.0722 -118.4441 405134348 683849 93 1969 76 3891 SRX2752623 Unrestricted 0.0 Metagenome 3300037563 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 20-24 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037563 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0474 642228247 1048981 199 7 288 10 SRX4415364, SRX8658336 Unrestricted 0.0 Metagenome 7000000088 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 370425937 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000088 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 1970280 1979 0 0 0 0 0.0 Metagenome 3300036772 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in New South Wales, Australia - Pf_4 DOE Joint Genome Institute (JGI) 3300036772 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil -33.6 150.0 1650983180 2793967 412 51 692 96 SRX8383311 Unrestricted 17.21 Metagenome 3300017424 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_03OCT2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017424 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 218555418 415223 96 88 103 136 SRX3927224 Unrestricted 9.34 Metagenome 3300032032 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 32315 DOE Joint Genome Institute (JGI) 3300032032 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Coastal Marine Unclassified seawater 36.7468 -122.0193 1758512390 3996973 1128 253 1895 442 SRX6423885 Unrestricted 14.95 Metagenome 3300045547 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-461 Genome Quebec 3300045547 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.243327 -122.946538 1250596873 2984162 705 160 1199 261 0.0 Metagenome 3300002046 *Microbiome Permanent Draft Soil microbial communities from Amlakhadi River, Gujarat, India Soil microbial communities from Amlakhadi River, Gujarat, India - Sample 6 3300002046 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Aquatic River Freshwater Sediment Soil 21.636337 72.989458 0 0 0 0 0 0 0.0 Metagenome 3300003904 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius albidus HERON ISLAND.2 DOE Joint Genome Institute (JGI) 3300003904 Metagenome Analysis Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 53.109679 8.847516 364426174 933281 6 3 9 7 SRX2577599 Unrestricted 0.0 Metagenome 3300007850 *Microbiome Permanent Draft Subglacial sediment microbial communities from East Antarctica Subglacial sediment microbial communities from East Antarctica Beijing Genomics Institute (BGI) 3300007850 Metagenome Analysis idba-ud released per JGI data release policy No Yes 666ywk@163.com Wenkai Yan No Environmental Terrestrial Unclassified Soil Unclassified subglacial sediment -69.416092 76.269958 9837 2 0 0 0 0 0.0 Metagenome 3300001114 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP1648 DOE Joint Genome Institute (JGI) 3300001114 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -5.74 -170.77 26512352 64037 41 8 72 11 SRX1982439 Unrestricted 0.0 Metagenome 3300006061 *Microbiome Permanent Draft Microbial communities from petroleum pipeline sediment, Khambat, Gujarat, India Microbial communities from petroleum pipeline sediment, Khambat, Gujarat, India Anand Agricultural University 3300006061 Metagenome Analysis Velvet released per JGI data release policy No Yes qnal.jain@gmail.com Kunal Jain No Engineered Industrial production Unclassified Engineered product Unclassified Petroleum Sediment 22.172778 72.983333 33242648 62463 36 3 76 5 0.0 Metagenome 3300027892 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes) (version 5) DOE Joint Genome Institute (JGI) 3300027892 Metagenome Analysis spades v. 3.11.1 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 1905073435 4193050 820 232 1258 375 SRX2565054, SRX2565055, SRX2565056 Unrestricted 0.0 Metagenome 3300002966 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - OP-RAMG-01 DOE Joint Genome Institute (JGI) 3300002966 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes rmkelly@ncsu.edu, rmkelly@ncsu.edu; twoyke@lbl.gov Robert Kelly, Robert Kelly; Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.611006 -110.440182 1213896977 2118793 1370 49 2155 85 SRX2554840, SRX2554839 0.0 Metagenome 3300013147 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100298 University of Pennsylvania 3300013147 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12684466 31419 21 0 24 1 SRX756603 0.0 Metagenome 3300013861 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room spacecraft assembly facility microbial communities from NASA Jet Propulsion Laboratory, California, USA - Floor swab, replicate A SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300013861 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1991 -118.1715 16988950 30781 18 0 29 2 Unrestricted 0.0 Metagenome 3300003224 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 DOE Joint Genome Institute (JGI) 3300003224 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 51.62 -128.09 65503514 179033 194 49 276 63 SRX2575216 Unrestricted 0.0 Metagenome 3300006753 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG DOE Joint Genome Institute (JGI) 3300006753 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -11.499 -81.405 485327911 1099986 67 0 89 1 SRX2926761 Unrestricted 0.0 Metagenome 3300024300 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Lake Matano, South Sulawesi, Indonesia - Watercolumn_Matano_2014_102_MG DOE Joint Genome Institute (JGI) 3300024300 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 719763255 1760652 743 12 1262 42 SRX4480643 Unrestricted 31.59 Metagenome 3300039102 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - WEM-2_at_6-7_cm Genome Quebec 3300039102 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89896 -73.80984 606557292 1545519 815 28 1731 46 0.0 Metagenome 3300008385 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit number 3 of subject 763536994 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008385 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 71645908 96995 65 0 96 0 0.0 Metagenome 3300028413 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #496 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028413 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 209826729 404242 82 30 108 30 SRX3295826 Unrestricted 0.0 Metagenome 2124908011 *Microbiome Permanent Draft Human saliva microbial communities from Los Alamos National Lab, USA Human Saliva microbiome from visit number 1 of subject 763496533 Los Alamos National Laboratory 2124908011 Metagenome Analysis released per JGI data release policy No Yes BCM No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human saliva 38.646 -90.224 90288620 206232 4 0 46 0 0.0 Metagenome 3300014683 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00483 Weill Cornell Medical College 3300014683 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.82 -73.89 39237999 58338 28 0 31 0 SRX822452 0.0 Metagenome 3300042315 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME22Oct2012-rr0629 DOE Joint Genome Institute (JGI) 3300042315 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 446756246 768780 200 31 295 34 Unrestricted 26.33 Metagenome 3300009448 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Groundwater microbial communities from Cold Creek, Nevada to study Microbial Dark Matter (Phase II) - Cold Creek Source DOE Joint Genome Institute (JGI) 3300009448 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes rstepanauskas@bigelow.org, rstepanauskas@bigelow.org; duane.moser@dri.edu Ramunas Stepanauskas, Ramunas Stepanauskas; Duane Moser No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 36.41 -115.74 819667025 1541169 677 141 1266 245 SRX2948574 Unrestricted 0.0 Metagenome 3300002803 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A1-10 DOE Joint Genome Institute (JGI) 3300002803 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 306007 1045 12 0 26 0 SRX1991105 Unrestricted 0.0 Metagenome 3300026339 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen10, Rep 2 DOE Joint Genome Institute (JGI) 3300026339 Metagenome Analysis spades v. 3.11.1 Yes Yes xpeng@seoe.sc.edu; momalley@engineering.ucsb.edu Xuefeng (Nick) Peng; Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 22002412 26190 40 0 56 0 SRX5645628 Unrestricted 0.0 Metagenome 3300044238 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T112 S DOE Joint Genome Institute (JGI) 3300044238 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.8272 -64.3811 339684549 802483 28 3 44 6 Unrestricted 45.17 Metagenome 3300005518 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG DOE Joint Genome Institute (JGI) 3300005518 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 4907825049 12829096 2993 72 5116 142 SRX2744902 Unrestricted 0.0 Metagenome 3300015350 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_01AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015350 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 383572455 619298 56 272 92 490 SRX3923580 Unrestricted 8.19 Metagenome 3300057122 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2020-0030 DOE Joint Genome Institute (JGI) 3300057122 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.7269 -83.42329 183743211 468825 230 71 450 134 Unrestricted 39.96 Metagenome 7000000556 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764224817 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000556 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 127499043 228354 0 0 0 0 0.0 Metagenome 3300031657 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from Ellis Fjord, Antarctic Ocean - #131 DOE Joint Genome Institute (JGI) 3300031657 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5958 78.1913 508273244 918050 398 3 588 4 SRX5649647 Unrestricted 27.23 Metagenome 3300053227 *Microbiome Permanent Draft Soil microbial communities from various environments and locations in the USA Soil microbial communities from forest in Falmouth, Massachusetts, USA - OKPF_BTM DOE Joint Genome Institute (JGI) 3300053227 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nancy.hess@pnnl.gov Nancy Hess No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 41.5519 -70.6354 254404782 479922 98 6 149 6 Unrestricted 95.71 Metagenome 3300033108 *Microbiome Permanent Draft Characterization of microbial community from aquifers in Araihazar, Bangladesh Aquifer sediment microbial communities from Pleistocene sands, Araihazar, Bangladesh - B3 Site sediment University of Manchester 3300033108 Metagenome Analysis Megahit v. 1.0.6 released by JGI data releasing policy No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Terrestrial Aquifer Deep subsurface Unclassified Aquifer sediment 23.78 90.64 276085113 597965 526 32 1100 41 0.0 Metagenome 3300031965 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185 DOE Joint Genome Institute (JGI) 3300031965 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9888 -108.3994 4263537345 8754373 2147 13 3493 27 SRX5786914 Unrestricted 14.83 Metagenome 3300042368 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME27Jul2014-rr0821 DOE Joint Genome Institute (JGI) 3300042368 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 658818858 1059007 265 68 362 86 Unrestricted 15.25 Metagenome 3300005359 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone Obsidian Hot Spring - Sample 10594 DOE Joint Genome Institute (JGI) 3300005359 Metagenome Analysis lucy / pga No Yes dmead@lucigen.com David Mead No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6100594 -110.4388217 6.37 4270275 7085 1 0 7 0 0.0 Metagenome 3300000637 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 20AUG2007 epilimnion DOE Joint Genome Institute (JGI) 3300000637 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300049145 *Microbiome Permanent Draft Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama - S051_CH7_control DOE Joint Genome Institute (JGI) 3300049145 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes njbouskill@lbl.gov Nicholas Bouskill No Environmental Terrestrial Tropical forest Soil Bulk soil Soil 9.17936 -79.8296 407195093 1030201 273 19 486 32 Unrestricted 8.49 Metagenome 3300037011 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL18G_09-S DOE Joint Genome Institute (JGI) 3300037011 Metagenome Analysis metaspades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5106 -110.3566 2898313314 4505332 761 3 1204 3 SRX8273854 Unrestricted 17.68 Metagenome 3300009189 *Microbiome Permanent Draft Estuarine microbial communities from Mobile Bay, Alabama Estuarine microbial communities from Mobile Bay, Alabama - WINU Auburn University 3300009189 Metagenome Analysis CLC 9 De novo released per JGI data release policy No Yes mariitarichard@gmail.com Richard Mariita No Environmental Aquatic Intertidal zone Marine Estuary Aquatic, Marine 30.4464641 -87.9922684 717 2 0 0 0 0 0.0 Metagenome 3300028979 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 350_4M Beijing Genomics Institute (BGI) 3300028979 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 29487237 34372 25 0 31 0 ERX491104 0.0 Metagenome 3300013468 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00811 Weill Cornell Medical College 3300013468 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.97 11406269 14198 4 0 7 0 SRX822777 0.0 Metagenome 3300046022 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TST12 DOE Joint Genome Institute (JGI) 3300046022 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nwfortney@gmail.com; dnoguera@wisc.edu Nathaniel Fortney; Daniel Noguera Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.414 70063912 99847 82 2 104 6 SRX12687768 Unrestricted 0.0 Metagenome 3300029611 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36440 Beijing Genomics Institute (BGI) 3300029611 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 183502191 230531 156 0 222 0 0.0 Metagenome 3300060354 *Microbiome Permanent Draft Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA - CNF8WT2 DOE Joint Genome Institute (JGI) 3300060354 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sydneyg@ucr.edu Sydney Glassman No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 33.6681 -117.456 1826005170 3195241 748 129 1337 192 Unrestricted 18.91 Metagenome 3300054043 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_6_10 re-annotation DOE Joint Genome Institute (JGI) 3300054043 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 220646956 508485 177 25 344 52 SRX3002043 0.0 Metagenome 3300029476 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001904-94 Beijing Genomics Institute (BGI) 3300029476 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 158475688 188074 129 0 173 0 0.0 Metagenome 3300007268 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763840445 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007268 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 27143538 57683 26 0 54 0 0.0 Metagenome 3300042787 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_12_17 NMDC pilot DOE Joint Genome Institute (JGI) 3300042787 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 9143824 10838 10 0 26 0 SRX2924866 0.0 Metagenome 3300025679 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample F53-3 deep-092012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025679 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 474337048 871489 244 9 356 16 SRX1987723 Unrestricted 0.0 Metagenome 3300017695 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ540 (21.06) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017695 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.024 163.9124 709927842 1552546 610 21 1046 29 SRX3048467, SRX3048468 Unrestricted 3.11 Metagenome 3300008717 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 158479027 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008717 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 132246979 188646 118 0 148 0 0.0 Metagenome 3300026457 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Colum_RepB_8h DOE Joint Genome Institute (JGI) 3300026457 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 166921656 376394 218 19 316 33 SRX4547334 Unrestricted 12.07 Metagenome 3300020541 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 26AUG2009 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020541 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 122811527 257801 146 35 217 61 SRX1988276 Unrestricted 0.0 Metagenome 3300006199 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t30_691M_inflammed - microbial_metagenome University of Texas Southwestern Medical Center 3300006199 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 194636452 435710 161 0 239 3 0.0 Metagenome 3300003600 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_200m_DNA DOE Joint Genome Institute (JGI) 3300003600 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 173073952 342903 143 8 280 7 Unrestricted 0.0 Metagenome 3300042769 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N1_10_20 NMDC pilot DOE Joint Genome Institute (JGI) 3300042769 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380143 -119.2723688 103841617 260267 153 5 300 7 SRX2523177 0.0 Metagenome 3300005758 *Microbiome Permanent Draft Cyanobacterial Bloom Metagenomics Project Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300005758 Metagenome Analysis CLC Genomics Workbench released per JGI data release policy No Yes boonfei@ualberta.ca, janelle@mit.edu; boonfei@ualberta.ca BOONFEI TAN, Janelle Thompson; BOONFEI TAN No Environmental Aquatic Lake Freshwater Unclassified lake water 1.411221 103.905587 310036521 454119 55 26 52 28 0.0 Metagenome 3300012134 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT142_2 DOE Joint Genome Institute (JGI) 3300012134 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9225 -106.9509 101244376 247410 225 37 512 64 SRX3368763 Unrestricted 0.0 Metagenome 7000000716 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 370425937 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000716 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 73971811 131958 0 0 0 0 0.0 Metagenome 3300005437 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG DOE Joint Genome Institute (JGI) 3300005437 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.4774 -85.451 3777149543 10836808 2641 244 4673 483 SRX2745043 Unrestricted 0.0 Metagenome 3300000186 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2010 P16 2000m DOE Joint Genome Institute (JGI) 3300000186 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 49.283333 -134.666667 31667212 80181 34 2 62 8 Unrestricted 0.0 Metagenome 3300055550 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.16C.15 SIP fraction DOE Joint Genome Institute (JGI) 3300055550 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 272413796 454737 91 21 138 41 Unrestricted 11.78 Metagenome 3300043532 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield ecozone, Canada - Lake 06-264 Genome Quebec 3300043532 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.647501 -53.729392 639425003 1472632 197 32 359 61 0.0 Metagenome 2209111018 *Microbiome Finished Microbial communities from bioreactor at West Virginia State University,USA and at Bielefeld, Germany Mesophilic bioreactor microbial communities at Bielefeld, Germany West Virginia State University 2209111018 Metagenome Analysis Newbler released per JGI data release policy No Yes dsharma@wvstateu.edu Deepak Sharma No Engineered Solid waste Composting Grass Bioreactor Solid waste from Bioreactor 52.09722606 8.43561172 7.78 506480822 1468041 1715 0 2633 0 0.0 Metagenome 3300009841 *Microbiome Permanent Draft Wood falls microbial communities from Lacaze-Duthiers Canyon, Mediterranean Sea, France Wood falls microbial communities from Lacaze-Duthiers Canyon, Mediterranean Sea, France - SF1CC Molecular Research LP (MR DNA) 3300009841 Metagenome Analysis IDBA_UD released per JGI data release policy Yes Yes pierre.galand@obs-banyuls.fr Pierre Galand No Environmental Aquatic Benthic Marine Wood fall Wood falls 42.4666667 3.4666667 16078057 28990 21 6 21 14 0.0 Metagenome 3300013609 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100100 University of Pennsylvania 3300013609 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3930606 10287 4 0 10 0 SRX756730 0.0 Metagenome 2012990006 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring microbial communities from Joseph's Coat Spring Transect A, Yellowstone National Park, USA - YSTONE1 (JC3A) 2012990006 Metagenome Analysis released per Ryan Jennings No Yes binskeep@montana.edu William Inskeep, William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.731451 -110.7113131 6-6.2 8157880 10153 0 0 0 0 0.0 Metagenome 3300009167 *Microbiome Permanent Draft Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300009167 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes christopher.s.miller@ucdenver.edu Christopher Miller, Christopher S. Miller Yes 29146959 Environmental Aquatic Wetlands Freshwater Unclassified Freshwater wetlands 41.384 -82.513 4923714269 10000384 2737 15 4749 19 SRX5010719, SRX5010717, SRX5010718, SRX5010715, SRX5010716, SRX5010713, SRX5010714, SRX5010711, SRX5010712, SRX5010720, SRX5010710, SRX5010721 Unrestricted 0.0 Metagenome 3300035213 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2010_2000m DOE Joint Genome Institute (JGI) 3300035213 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 50.0 -145.0 445864594 1063391 334 53 598 93 SRX8187627 Unrestricted 15.28 Metagenome 3300026738 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A5-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300026738 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 21495309 71564 70 0 135 0 SRX1991123 Unrestricted 0.0 Metagenome 3300047632 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA107-CHB DOE Joint Genome Institute (JGI) 3300047632 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6359 -83.4952 334547146 861644 295 13 502 27 Unrestricted 8.7 Metagenome 3300045195 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_4_D DOE Joint Genome Institute (JGI) 3300045195 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 141593210 166172 92 1 98 2 Unrestricted 142.62 Metagenome 3300031178 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_7 DOE Joint Genome Institute (JGI) 3300031178 Metagenome Analysis spades v. 3.12.0 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 117318405 152616 115 0 139 1 SRX5661471 Unrestricted 154.79 Metagenome 3300020173 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041408US metaG (spades assembly) DOE Joint Genome Institute (JGI) 3300020173 Metagenome Analysis spades v. 3.10.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 870376052 1648540 389 31 606 47 SRX3920895 Unrestricted 30.59 Metagenome 3300013595 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100296 University of Pennsylvania 3300013595 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3478125 9084 11 1 21 0 SRX756605 0.0 Metagenome 3300025306 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_200m (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025306 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; shallam@interchange.ubc.ca; jkjarett@lbl.gov Ramunas Stepanauskas; Steven Hallam; Jessica Jarett No Environmental Aquatic Lake Freshwater Unclassified freshwater 50.0621 -124.7214 326701388 771454 463 1 760 7 SRX3570957 Unrestricted 15.06 Metagenome 3300034991 *Microbiome Finished Bovine rumen microbiome Rumen bacterial community from a cow in Toulouse, France - MLR University of Toulouse 3300034991 Metagenome Analysis Denovo v. 3.2 released by JGI data releasing policy No Yes emnabouhajja@gmail.com Emna Bouhajja No Host-associated Mammals Stomach Digestive system Rumen rumen 43.604652 1.444209 366145 330 1 0 1 0 0.0 Metagenome 3300006493 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 763901136 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006493 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 8378619 17704 9 0 11 0 0.0 Metagenome 3300011733 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01134 Weill Cornell Medical College 3300011733 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.7 -73.93 15035652 17554 9 0 16 0 SRX823089 0.0 Metagenome 7000000043 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2 of subject 158883629 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000043 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 4093351 8902 0 0 0 0 0.0 Metagenome 3300007500 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763840445 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007500 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 162480213 231325 130 0 183 0 0.0 Metagenome 3300022417 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1OPP3 JM27 AGRF 3300022417 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 47777028 89267 36 0 62 1 0.0 Metagenome 3300014356 *Microbiome Permanent Draft Human fecal and colon tissue microbial communities from Howard University Cancer Center, USA Human colon tissue microbial communities from Howard University Cancer Center, USA - CC0908 HiThru Analytics LLC 3300014356 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Colon mucosa Human colon tissue 17266286 23328 15 0 17 0 SRX1620403 0.0 Metagenome 3300044621 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME27Jul2018-rr0973 DOE Joint Genome Institute (JGI) 3300044621 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 915192573 1388430 325 65 432 103 Unrestricted 14.07 Metagenome 3300002553 *Microbiome Permanent Draft Freshwater jakobid flagellates associated microbial communities from Zagora City, Morocco Bacteria associated with jakobid flagellates Genome Quebec 3300002553 Metagenome Analysis released per JGI data release policy No Yes strassert@protist.eu, strassert@gmx.net Juergen Strassert, Jurgen Strassert No Host-associated Protists Jakobids Excavata Unclassified Freshwater jakobid flagellates associated 30.350367 -5.836196 364065350 1394937 68 22 175 41 0.0 Metagenome 3300008807 *Microbiome Permanent Draft Role of bacteriophages in aerobic granulation Wastewater viral communities from SBR reactor in SCELSE, Singapore - ContigAbv1k Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300008807 Metagenome Analysis Velvet released per JGI data release policy No Yes muha0200@e.ntu.edu.sg Muhammad Hafiz Ismail No Engineered Bioreactor Marine sediment inoculum Continuous culture SBR_Wastewater 1.345254 103.678179 52138146 84674 7 0 7 2 0.0 Metagenome 3300029368 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 082_4_27_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029368 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 97511626 119766 116 0 142 0 0.0 Metagenome 3300013376 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100302 University of Pennsylvania 3300013376 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 13607247 35843 10 0 15 0 SRX756599 0.0 Metagenome 3300044297 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Congo - River, Brazzaville, Congo - CONGO_067 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300044297 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater -4.3092 15.2356 405087603 1064982 510 72 782 124 Unrestricted 7.53 Metagenome 3300029315 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 001_6_5_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029315 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 157316190 184222 124 0 206 0 0.0 Metagenome 3300009483 *Microbiome Permanent Draft Host-associated microbial communities of aphids from plants in several locations around USA Microbial communities of aphids from Rhus glabra galls in Chiricahua Mtns, AZ, USA - Melaphis rhois NM090294 seqcov University of Texas, Austin 3300009483 Metagenome Analysis CLC Genomics released per JGI data release policy Yes Yes becky.chong@utexas.edu Rebecca Chong No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Rhus glabra 31.934752 -109.3828 250743935 146134 1 1 1 2 0.0 Metagenome 3300001974 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Upwelling, Fernandina Island, Equador - GS031 J. Craig Venter Institute (JCVI) 3300001974 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine -0.3011111 -91.651665 269217765 475367 283 0 479 1 0.0 Metagenome 3300001392 *Microbiome Permanent Draft Black smokers hydrothermal plume microbial communities from the Eastern Lau Spreading Center ELSC Metagenome 3300001392 Metagenome Analysis released by JGI data releasing policy No Yes akarthik@umich.edu Karthik Anantharaman No Environmental Aquatic Hydrothermal vents Marine Black smokers Black smokers hydrothermal plume -20.0 176.0 380869738 508679 30 10 64 9 0.0 Metagenome 3300005891 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_304 DOE Joint Genome Institute (JGI) 3300005891 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 348808672 1141099 486 14 876 20 SRX2564780, SRX2581053 Unrestricted 0.0 Metagenome 3300050259 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_11 DOE Joint Genome Institute (JGI) 3300050259 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -76.901 160.91 262044534 403049 42 10 51 19 SRX18235887 Restricted 51.58 Metagenome 3300014648 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01533 Weill Cornell Medical College 3300014648 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.99 32085059 38995 15 0 26 0 SRX823409 0.0 Metagenome 3300022538 *Microbiome Permanent Draft Abyssal plain sediment microbial communities from Eastern Gulf of Mexico, Atlantic Ocean Abyssal plain sediment microbial communities from Eastern Gulf of Mexico, Atlantic Ocean - EGM044 University of Calgary 3300022538 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy Yes Yes dongxiyang@tio.org.cn Xiyang DONG No Environmental Aquatic Sediment Marine Unclassified Abyssal plain sediment 25.3043 -90.0659 862340301 1490084 496 21 782 31 0.0 Metagenome 3300038570 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark - 1538-PRJ1066-RL-Sewage-92_S5_L001 Technical University of Denmark 3300038570 Metagenome Analysis Yes Yes No Engineered Wastewater Unclassified Sewage Unclassified Sewage 55.694986 12.615026 16854339 37064 101 0 156 0 ERX1584033 0.0 Metagenome 3300030326 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes in Niagara, Canada Freshwater lake microbial communities from the Great Lakes in Niagara, Canada - LS-1P-Aug21-2013 McMaster University 3300030326 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.2043 -79.2669 6122745 10331 11 1 22 0 0.0 Metagenome 3300042611 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Cubitermes c.f. sulcifrons from Ebogo II, Mbalmayo, Cameroon - Cus372 Eurofins MWG Operon 3300042611 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 3.381958 11.463214 438971915 510394 155 10 249 24 0.0 Metagenome 3300042476 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME27Sep2007-rr0701 DOE Joint Genome Institute (JGI) 3300042476 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 781797078 1277845 363 66 542 87 Unrestricted 18.46 Metagenome 3300043072 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - WH_080817 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043072 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.8725 -89.3578 5237692 15720 39 8 76 8 SRX9382053 Unrestricted 37.99 Metagenome 3300049597 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Jun2003-ww0233 (version 2) DOE Joint Genome Institute (JGI) 3300049597 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 742023491 1099049 190 72 264 95 Unrestricted 0.0 Metagenome 3300029787 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172 CEA Genoscope 3300029787 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 35.7528 14.2765 166571751 330152 16 3 26 4 0.0 Metagenome 3300054088 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40 re-annotation DOE Joint Genome Institute (JGI) 3300054088 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 630995506 1165540 236 6 414 14 SRX3959983 0.0 Metagenome 3300038862 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada - Lake 06-126 metaSPAdes Genome Quebec 3300038862 Metagenome Analysis SPAdes v. 3.11.1 metaSPAdes mode released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.99124 -74.02811 1075058136 2579758 493 125 905 246 0.0 Metagenome 3300011679 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00345 Weill Cornell Medical College 3300011679 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.64 -74.07 26147166 36391 12 0 24 0 SRX822318 0.0 Metagenome 3300040124 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_032-M-20160720-COMP-DNA1 Battelle Memorial Institute 3300040124 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 11598851 35398 58 8 110 9 0.0 Metagenome 3300028593 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant24 DOE Joint Genome Institute (JGI) 3300028593 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1150727 -123.147 1013434897 1704560 925 18 1359 21 SRX5248704 Unrestricted 36.79 Metagenome 7000000131 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 246515023 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000131 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 45039060 68524 0 0 0 0 0.0 Metagenome 3300048783 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 006-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300048783 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9578 -106.9848 896356387 2213143 775 48 1366 75 Unrestricted 0.0 Metagenome 3300000698 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 57 DOE Joint Genome Institute (JGI) 3300000698 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 9377701 26984 47 0 58 0 SRX4341059 Unrestricted 0.0 Metagenome 3300046355 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_148 DOE Joint Genome Institute (JGI) 3300046355 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9802 -106.9905 243467441 840353 565 12 1111 21 Restricted 0.0 Metagenome 3300001670 *Microbiome Permanent Draft Wastewater treatment plant microbial communities from Luxembourg B2rrna 3300001670 Metagenome Analysis idba-tran released by JGI data releasing policy No Yes magdalena.calusinska@list.lu Magdalena Calusinska No Engineered WWTP Unclassified Wastewater Unclassified Wastewater treatment plant 49.726047 5.920576 8.05 3421806 11387 2424 184 8225 379 0.0 Metagenome 3300002713 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A4-11 DOE Joint Genome Institute (JGI) 3300002713 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 917047 3089 33 0 53 0 SRX1991159 Unrestricted 0.0 Metagenome 3300026797 *Microbiome Permanent Draft Cyanobacterial communities from the Joint Genome Institute, California, USA Cyanobacterial communities from the Joint Genome Institute, California, USA - FECB-21 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026797 Metagenome Analysis spades v. 3.11.1 Yes Yes mhess@ucdavis.edu Matthias Hess No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Cyanobacterial 37.9313884 -122.0239394 38576980 51328 10 2 10 1 SRX7697641 Unrestricted 0.0 Metagenome 3300010265 *Microbiome Permanent Draft Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 9_31_10_142_A3 metaG DOE Joint Genome Institute (JGI) 3300010265 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes Steve.Brown@lanzatech.com Steven Brown Yes 30202438 Engineered Bioreactor Anaerobic Semi-continuous Digestate Switchgrass degrading 43.726 -72.1429 225419778 353930 466 2 633 7 SRX3290037 Unrestricted 0.0 Metagenome 3300005981 *Microbiome Permanent Draft Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 DOE Joint Genome Institute (JGI) 3300005981 Metagenome Analysis SPADES v3.5.0 Released upon Christa's approval Yes Yes nnivanova@lbl.gov, NNIvanova@lbl.gov; filipagodoyvitorino@gmail.com; fgodoyvitorino@gmail.com Natasha Ivanova, Natalia Ivanova; Filipa Godoy-Vitorino; Filipa Godoy Vitorino No Host-associated Plants Rhizosphere Roots Unclassified Tabebuia heterophylla rhizosphere 18.402889 -66.050054 939574701 1901719 575 24 1166 41 SRX2562478 0.0 Metagenome 3300032258 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Coastal sediment microbial communities from Maine, United States - Eddy worm burrow 2 cm DOE Joint Genome Institute (JGI) 3300032258 Metagenome Analysis spades v. 3.13.0 Yes Yes jbeam@bigelow.org; demerson@bigelow.org Jake Beam; David Emerson No Environmental Aquatic Coastal Marine Sediment worm burrow 43.9948 -69.6486 2909048800 6819640 1862 66 3184 120 SRX6412379 Unrestricted 8.95 Metagenome 3300021132 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 25AUG2008 epilimnion DOE Joint Genome Institute (JGI) 3300021132 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 115393027 231982 125 26 196 36 Unrestricted 0.0 Metagenome 3300010218 *Microbiome Permanent Draft Soil microbial communities from Bangor area, North Wales, UK enriched with cashew seed oil Soil microbial communities from Bangor area, North Wales, UK enriched with cashew seed oil - week1, replicate 1 Fidelity Systems Inc 3300010218 Metagenome Analysis Phred/Phrap/Consed v. 23.0 released per JGI data release policy Yes Yes stepan.toshchakov@gmail.com Stepan Toshchakov No Engineered Lab enrichment Unclassified Unclassified Unclassified soil 53.24 -4.01 87759337 174725 35 1 58 4 0.0 Metagenome 3300029769 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 063_3_14_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029769 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 192115930 247857 238 0 333 0 0.0 Metagenome 3300039329 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 7_M Beijing Genomics Institute (BGI) 3300039329 Metagenome Analysis Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 115716562 161807 85 0 139 0 ERX491310 0.0 Metagenome 3300034149 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17 DOE Joint Genome Institute (JGI) 3300034149 Metagenome Analysis metaspades v. 3.13.0 Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Aquatic Sediment Floodplain Unclassified sediment 38.9229 -106.9499 738342344 1881179 555 14 1038 28 SRX7630714 Unrestricted 6.72 Metagenome 3300019857 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Sao Paulo, Brazil - ZCI3 Center for Advanced Technologies in Genomics, Sao Paulo University 3300019857 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Engineered Solid waste Composting Zoo waste Unclassified compost -23.651072 -46.620675 52641963 94788 61 1 91 3 0.0 Metagenome 3300044666 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1E DOE Joint Genome Institute (JGI) 3300044666 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Unclassified Roots Unclassified Root 14.75 -16.85 891646789 1353107 19 35 52 86 Unrestricted 28.75 Metagenome 3300027343 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F04 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027343 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 41770974 51391 57 0 43 0 SRX3195092 Unrestricted 0.0 Metagenome 3300043210 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_12 (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043210 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 170603898 293525 67 3 110 3 SRX9140457 Unrestricted 98.79 Metagenome 3300000674 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 52 DOE Joint Genome Institute (JGI) 3300000674 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 4941622 16205 21 0 40 0 SRX4340975 Unrestricted 0.0 Metagenome 3300070703 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_005-M-20200803-COMP-DNA1 3300070703 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 31817207 97404 100 9 167 16 0.0 Metagenome 3300014764 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 615_B Beijing Genomics Institute (BGI) 3300014764 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 27624631 31092 14 0 21 0 ERX491269 0.0 Metagenome 3300026862 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 31 (SPAdes) DOE Joint Genome Institute (JGI) 3300026862 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 53533266 131145 55 0 121 0 SRX4340704 Unrestricted 0.0 Metagenome 3300007091 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764042746 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007091 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 60079782 100836 50 0 67 0 0.0 Metagenome 3300060913 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_004-O-20210805-comp-1 DOE Joint Genome Institute (JGI) 3300060913 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tundra Soil Unclassified Terrestrial soil 68.616768 -149.629355 2723218105 4154624 494 166 759 229 Unrestricted 15.68 Metagenome 3300037295 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Extra Lake-4 #416 DOE Joint Genome Institute (JGI) 3300037295 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4378 78.2886 631884031 1238812 349 65 530 102 SRX9173550 Unrestricted 20.41 Metagenome 3300027204 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027204 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.234 -123.9135 52518381 119934 151 52 264 76 SRX2753607 Unrestricted 48.63 Metagenome 3300037400 *Microbiome Permanent Draft Rumen fluid microbial communities from dairy cows in UC Davis, California, USA Rumen fluid microbial communities from dairy cow in UC Davis, California, USA - UCD_Rumen_Seaweed_2631 DOE Joint Genome Institute (JGI) 3300037400 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bmroque@ucdavis.edu Breanna Roque No Host-associated Mammals Stomach Digestive system Rumen fluid rumen fluid 38.5368 -121.7595 2282287641 3394301 1208 31 1805 30 SRX9149542 Unrestricted 17.19 Metagenome 3300027924 *Microbiome Permanent Draft Wastewater bacterial communities from water purifying plant in Alicante, Spain Wastewater bacterial communities from water purifying plant in Alicante, Spain - Replicate C1 Polytechnic University of Valencia 3300027924 Metagenome Analysis metaSPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 38.43 -0.42 288259094 474473 250 19 332 17 0.0 Metagenome 3300036593 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B6.5_Sample6.Rodeo5.Well1210 DOE Joint Genome Institute (JGI) 3300036593 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 233047734 422222 225 0 384 0 SRX8356120 Unrestricted 46.47 Metagenome 3300021059 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5a_8mM DOE Joint Genome Institute (JGI) 3300021059 Metagenome Analysis spades v. 3.10.1 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 85852507 75360 6 1 7 2 SRX4010509 Unrestricted 66.45 Metagenome 3300038797 *Microbiome Permanent Draft Oil enriched soil microbial communities from a restaurant grease-deposit-site in Germany Olive oil enriched soil microbial communities from a restaurant grease-deposit-site in Germany - 1 Ruhr University Bochum 3300038797 Metagenome Analysis Yes Yes No Engineered Lab enrichment Unclassified Defined media Unclassified Olive oil enriched soil 125390427 177572 65 0 55 0 0.0 Metagenome 3300010413 *Microbiome Permanent Draft Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_9 Beijing Novogene Bioinformatics Technology Co., Ltd 3300010413 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Intertidal zone Marine Mangrove sediment Mangrove sediment 22.0 114.0 3300161726 5819539 1679 24 3056 25 0.0 Metagenome 3300036119 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - IR.F.S.T0 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036119 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 40287127 80754 56 2 119 3 SRX4415254, SRX7705506 Unrestricted 0.0 Metagenome 3300049770 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F12_B_4_control DOE Joint Genome Institute (JGI) 3300049770 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 163749788 399297 369 22 757 30 Unrestricted 9.92 Metagenome 3300012177 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ027 MetaG DOE Joint Genome Institute (JGI) 3300012177 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.8721 -74.5205 268102847 565851 279 18 528 46 SRX3539460 Unrestricted 0.0 Metagenome 3300004056 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWB_D1 DOE Joint Genome Institute (JGI) 3300004056 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 37.926434 -122.509186 745987756 2210874 768 16 1519 28 SRX7142928 Unrestricted 0.0 Metagenome 3300056659 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.20C.8 SIP fraction DOE Joint Genome Institute (JGI) 3300056659 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 118248006 231411 109 11 148 15 Unrestricted 9.61 Metagenome 3300035701 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL18G_12-A DOE Joint Genome Institute (JGI) 3300035701 Metagenome Analysis metaspades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5106 -110.3566 4663420121 9406578 2330 23 3978 15 SRX8279223 Unrestricted 15.57 Metagenome 3300039583 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Taiga, AK, USA - HEAL_025-O-20170726-COMP-DNA1 Battelle Memorial Institute 3300039583 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.87569 -149.21334 96336234 229956 71 0 164 2 0.0 Metagenome 3300001888 *Microbiome Permanent Draft Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils (2) Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils - Sample17 3300001888 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Terrestrial Unclassified Soil Grasslands Grassland soil 23.850674 69.734802 0 0 0 0 0 0 0.0 Metagenome 3300059420 *Microbiome Permanent Draft Sorghum rhizosphere and bulk soil microbial communities from University of Arizona Maricopa Agricultural Center, AZ, USA Soil microbial communities from sorghum plot in University of Arizona Maricopa Agricultural Center, AZ, USA - 4_0-15_MAC_20210810 DOE Joint Genome Institute (JGI) 3300059420 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Agricultural land Soil Unclassified Soil 33.07735 -111.974819 658671808 1616957 752 26 1426 50 Unrestricted 7.92 Metagenome 3300005293 *Microbiome Permanent Draft Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan State University, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) DOE Joint Genome Institute (JGI) 3300005293 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Miscanthus rhizosphere 42.406189 -85.40016 2324669068 5721892 2089 32 3802 94 Unrestricted 0.0 Metagenome 3300002472 *Microbiome Permanent Draft Fumarolic subsurface microbial communities from Tramway Ridge at Mt. Erebus, Antarctica for carbon cycling studies in geothermal environments Geothermal fumarole subsurface microbial communities from Mt. Erebus, Antarctica - 1A2A DOE Joint Genome Institute (JGI) 3300002472 Metagenome Analysis revert back to private per Christa Yes Yes twoyke@lbl.gov, craig.herbold@microbial-ecology.net Tanja Woyke, Craig Herbold No Environmental Terrestrial Fumaroles Volcanic Unclassified Fumarolic subsurface -77.5182 167.1113 5406195 9286 3 0 7 0 SRX2555313 Unrestricted 0.0 Metagenome 3300003076 *Microbiome Permanent Draft Hot spring microbial communities from Five Geothermal Springs in Yellowstone National Park, USA Hot spring microbial communities from Five Geothermal Springs in Yellowstone National Park, USA - Mammoth Hot Springs-Narrow Gauge J. Craig Venter Institute 3300003076 Metagenome Analysis Made public because these are downloaded from Genbank No Yes Rusch, D No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.969421 -110.709833 6.6 1722505 2060 2 0 3 0 0.0 Metagenome 3300043699 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - Rondonia_Pasture_3_B100m DOE Joint Genome Institute (JGI) 3300043699 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.204 -62.774 511960931 1416646 438 2 795 7 Unrestricted 7.36 Metagenome 3300023048 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-247 DOE Joint Genome Institute (JGI) 3300023048 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Unclassified Plant litter Unclassified leaf litter 40.2198 -122.9842 146497556 296144 119 132 157 177 SRX4392077 Unrestricted 15.18 Metagenome 3300003282 *Microbiome Permanent Draft Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia- Sample FLOC Australian Centre for Ecogenomics 3300003282 Metagenome Analysis CLC de novo assembler No Yes c.skennerton@gmail.com Connor Skennerton No Engineered Wastewater Biological phosphorus removal Nutrient removal Activated sludge Enhanced biological phosphorus removal bioreactor -27.485973 153.190699 57817623 95892 28 0 41 0 SRX404361 0.0 Metagenome 3300048528 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA008-CHU DOE Joint Genome Institute (JGI) 3300048528 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6365 -83.4956 270786283 688765 244 14 516 21 Unrestricted 9.37 Metagenome 3300035077 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 30_7.5_M_3 DOE Joint Genome Institute (JGI) 3300035077 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1863 -2.2145 846538232 2275732 731 18 1337 31 SRX8235045 Unrestricted 7.15 Metagenome 3300019731 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BLT_3-4_MG DOE Joint Genome Institute (JGI) 3300019731 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 118769153 292507 248 27 433 37 SRX3983232 Unrestricted 3.59 Metagenome 3300057000 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F1L_0_1 DOE Joint Genome Institute (JGI) 3300057000 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.95358208 -81.6734609 2915583515 4759543 1129 45 1978 52 Unrestricted 12.88 Metagenome 3300006298 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 737052003 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006298 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 85053889 110898 74 1 105 0 0.0 Metagenome 3300056895 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F2L_18_20 DOE Joint Genome Institute (JGI) 3300056895 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9762234 -81.70738203 1346209049 2197592 504 5 857 8 Unrestricted 15.1 Metagenome 3300034283 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061 DOE Joint Genome Institute (JGI) 3300034283 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1528868021 3042315 742 68 1089 137 SRX7621971 Unrestricted 12.78 Metagenome 3300031194 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States - P4_Day56_Rep3 DOE Joint Genome Institute (JGI) 3300031194 Metagenome Analysis spades v. 3.12.0 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass growth medium 37.8406 -122.2901 131459577 181407 134 0 140 1 SRX5661192 Unrestricted 135.06 Metagenome 3300018479 *Microbiome Permanent Draft Bovine feces microbial communities from beef and dairy calves in Davis, CA, USA Bovine feces microbial communities from dairy calf in Davis, CA, USA - DMJL001G re-assembly QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018479 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes jxnliu@ucdavis.edu Jinxin Liu No Host-associated Mammals Large intestine Digestive system Fecal feces 38.5449 -121.7405 167538811 251213 167 1 295 0 0.0 Metagenome 3300011257 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_3, 0.2 Toyama Prefectural University 3300011257 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Unclassified marine 37.1316 137.71844 166072000 331106 106 0 161 0 0.0 Metagenome 3300069476 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_009-O-20160818-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069476 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 83739895 188791 50 15 77 27 0.0 Metagenome 3300003151 *Microbiome Finished Alvinella pompejana epibiont microbial communities from the East Pacific Rise hydrothermal vent Alvinella pompejana epibiont microbial communities from the East Pacific Rise hydrothermal vent SymBio Corporation 3300003151 Metagenome Analysis PCAP Made public because these are downloaded from Genbank No Yes caryc@udel.edu Stephen Cary Yes 18987310 Host-associated Annelida Cuticle Integument Epibionts Alvinella pompejana epibiont 9.8344 -104.2844 147567453 266247 473 13 772 11 0.0 Metagenome 3300000970 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY66 J. Craig Venter Institute (JCVI) 3300000970 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 653523679 2218337 113 57 315 82 0.0 Metagenome 3300001481 *Microbiome Permanent Draft Sheep rumen microbial communities from New Zealand from high and low methane emitting sheep Sheep rumen microbial communities from New Zealand - Rank01_low DOE Joint Genome Institute (JGI) 3300001481 Metagenome Analysis Velvet Released because these are assemblies from SRA data No Yes janine.kamke@agresearch.co.nz, janine.kamke@uni-wuerzburg.de Janine Kamke No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen -40.352 175.608 365075575 727706 740 34 1212 52 0.0 Metagenome 3300069611 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_003-O-20160720-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069611 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 13409919 46996 57 8 107 17 0.0 Metagenome 3300020354 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000408 (ERX555905-ERR599164) CEA Genoscope 3300020354 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -29.5082 37.9202 345769636 870084 346 44 646 79 0.0 Metagenome 3300029042 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 39_M Beijing Genomics Institute (BGI) 3300029042 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 155103478 219578 178 1 277 1 ERX491138 0.0 Metagenome 3300039020 *Microbiome Permanent Draft Coastal seawater microbial communities from Massachusetts, USA Coastal seawater microbial communities from Nahant, Massachusetts, USA - M2.T76 Massachusetts Institute of Technology 3300039020 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Coastal seawater 42.0 -70.0 4839224 9355 23 1 38 1 0.0 Metagenome 3300030361 *Microbiome Permanent Draft Oyster larvae and tank water microbial communities from oyster tank in Dauphin Island, Alabama, USA Water microbial communities from oyster tank in Dauphin Island, Alabama, USA - 104W U.S. Food and Drug Administration 3300030361 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Unclassified Aquaculture Unclassified Water 30.25 -88.11 57867543 100036 70 0 102 0 0.0 Metagenome 3300001998 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot19A 3300001998 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 1760737 9940 51 1 102 5 0.0 Metagenome 3300020721 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 28JUL2008 hypolimnion DOE Joint Genome Institute (JGI) 3300020721 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 118711634 245007 111 13 164 13 Unrestricted 0.0 Metagenome 3300026125 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_H2O_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026125 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Water 37.4965 -122.1329 166282029 372046 286 28 457 48 SRX2523923 Unrestricted 0.0 Metagenome 2170459017 *Microbiome Permanent Draft Switchgrass, maize and mischanthus litter microbial communities from University of Illinois Energy Farm, Urbana, IL Litter degradation ZMR4 University of Illinois, Urbana-Champaign 2170459017 Metagenome Analysis released per JGI data release policy No Yes lixz@illinois.edu Xiangzhen Li No Engineered Solid waste Composting Grass Unclassified Switchgrass, maize and mischanthus litter 40.1097 -88.2041 223312193 545212 197 25 393 40 0.0 Metagenome 2166559015 *Microbiome Permanent Draft Microbial communities from the Atlantic Ocean and human feces from France, grouped together for a comparative study Marine microbial communities from the Atlantic Ocean, for comparison studies - Ocean3 (mb2001jd115_1 3714) 454 Life Sciences 2166559015 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Aquatic Oceanic Marine Unclassified Environmental and host-associated 42840920 71290 125 3 237 4 0.0 Metagenome 3300029962 *Microbiome Permanent Draft Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil - Buba_C3 Reanalysis Center for Advanced Technologies in Genomics, Sao Paulo University 3300029962 Metagenome Analysis metaSPAdes v. 3.12.0 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 43026943 75535 74 0 74 0 0.0 Metagenome 3300004171 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 43_HOW7 DOE Joint Genome Institute (JGI) 3300004171 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 138201001 311633 97 19 192 30 SRX2720572 Unrestricted 0.0 Metagenome 3300007636 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1371A-3 DOE Joint Genome Institute (JGI) 3300007636 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2342 -123.9167 115455168 242364 220 78 406 118 SRX2753608 Unrestricted 5.25 Metagenome 3300027620 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius algarvensis Type G CAVOLI (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027620 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 582619443 836994 11 6 18 3 SRX2712475 Unrestricted 0.0 Metagenome 7000000629 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 404239096 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000629 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 4985780 8135 0 0 0 0 SRX024100 0.0 Metagenome 3300016665 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water catchment in Singapore - WC_Site 1c, Oct Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016665 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 1.35 103.87 85126726 114387 14 19 20 22 0.0 Metagenome 3300043444 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Pringle Creek, Alvord, Texas, USA - pringlecreek_2019_sw_WHONDRS-S19S_0025 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043444 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 33.3783 -97.7833 376168803 604683 163 22 218 31 Unrestricted 45.53 Metagenome 3300013337 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100239 University of Pennsylvania 3300013337 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9552724 28306 25 1 27 0 SRX756662 0.0 Metagenome 3300026881 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 15 (SPAdes) DOE Joint Genome Institute (JGI) 3300026881 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 63397280 138824 86 7 146 12 SRX4338977 Unrestricted 0.0 Metagenome 3300002547 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert microbial communities from Antarctic Dry Valleys - UQ889 DOE Joint Genome Institute (JGI) 3300002547 Metagenome Analysis Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert -78.1358 164.1187 132562235 315096 159 0 250 0 SRX2555337 Unrestricted 0.0 Metagenome 3300031688 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #177 DOE Joint Genome Institute (JGI) 3300031688 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5596 77.8957 709144007 1595090 339 396 524 641 SRX5650082 Unrestricted 0.0 Metagenome 3300046401 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA085-TCU DOE Joint Genome Institute (JGI) 3300046401 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6876 -83.5019 199906617 580023 260 17 509 34 Unrestricted 7.58 Metagenome 3300014913 *Microbiome Permanent Draft Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay1, Core 4569-9, 0-3 cm DOE Joint Genome Institute (JGI) 3300014913 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nd.microbiota@gmail.com Nina Dombrowski Yes 30479325 Environmental Aquatic Hydrothermal vents Marine Sediment marine sediment 27.0151 -111.3798 1541311432 3433281 1381 16 2454 21 SRX3568615 Unrestricted 17.13 Metagenome 3300045046 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - WIN8-9-12-19 DOE Joint Genome Institute (JGI) 3300045046 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.4455 -120.5394 280039696 743010 388 21 731 24 Restricted 6.91 Metagenome 3300037313 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from bulk soil in EcoFAB chamber, Walnut Creek, California, United States - Soil-Control_D SG_16 DOE Joint Genome Institute (JGI) 3300037313 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9315 -122.0212 2145864388 3504383 722 69 1126 93 Unrestricted 18.06 Metagenome 3300020683 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 08JUL2008 hypolimnion DOE Joint Genome Institute (JGI) 3300020683 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 50543708 100630 54 1 77 1 Unrestricted 0.0 Metagenome 3300017815 *Microbiome Permanent Draft Archevir - Metagenome and diversity of hyperhalophilic archaeoviruses Saline water viral communities from hypersaline pond near village of Ngallou, Senegal - P5 GATC-Biotech AG, Konstanz, Germany 3300017815 Metagenome Analysis Idba_ud No Yes sroux@lbl.gov Simon Roux Yes 26472517 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified saline water 14.0491 -16.7624 7259880 14725 0 0 0 0 0.0 Metagenome 3300045966 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P35SSC1_190914_c DOE Joint Genome Institute (JGI) 3300045966 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 790146582 1203229 254 0 394 0 SRX20650317 Unrestricted 11.91 Metagenome 3300055542 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.19W.7 SIP fraction DOE Joint Genome Institute (JGI) 3300055542 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 212226431 384616 94 5 135 12 Unrestricted 20.38 Metagenome 7000000645 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 159753524 replicate 1 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000645 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 2115677 2220 0 0 0 0 0.0 Metagenome 3300037101 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 S-2-X DOE Joint Genome Institute (JGI) 3300037101 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 467447358 741529 152 4 232 4 SRX8160252 Unrestricted 22.35 Metagenome 3300008056 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 638754422 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008056 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 16130669 29194 20 0 31 0 0.0 Metagenome 3300049908 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - D8_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049908 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 90470435 221009 101 9 216 11 Unrestricted 0.0 Metagenome 3300059412 *Microbiome Permanent Draft Sorghum rhizosphere and bulk soil microbial communities from University of Arizona Maricopa Agricultural Center, AZ, USA Soil microbial communities from unplanted plot in University of Arizona Maricopa Agricultural Center, AZ, USA - plot1ctr0-15_20210708 DOE Joint Genome Institute (JGI) 3300059412 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Agricultural land Soil Unclassified Soil 33.07735 -111.974819 454919257 1153676 586 18 1138 29 Unrestricted 7.19 Metagenome 3300025483 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_10m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025483 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 270304439 479104 185 29 251 59 Unrestricted 0.0 Metagenome 3300005315 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila suzukii female 2 gut Cornell University 3300005315 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy No Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila suzukii female adult gut 42.875296 -77.006403 145364988 267022 7 7 3 12 0.0 Metagenome 3300070827 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_003-M-20190617-COMP-DNA1 3300070827 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 18923680 59556 53 3 109 7 0.0 Metagenome 3300071039 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_002-M-20160825-COMP-DNA1 3300071039 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 6950684 22209 42 4 73 9 0.0 Metagenome 3300029891 *Microbiome Permanent Draft Groundwater microbial communities from Horonobe Underground Research Laboratory (URL), Japan Groundwater microbial communities from Horonobe Underground Research Laboratory (URL), Japan - horonobe_ig2158 University of California, Berkeley 3300029891 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Released because its Published Yes Yes Yes 28350393 Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 45.045278 141.859444 179595433 241488 103 1 124 1 0.0 Metagenome 3300011448 *Microbiome Permanent Draft Fecal viral communites from wild urban brown rats in Berlin, Germany Fecal viral communites from wild urban brown rats in Berlin, Germany - Mu/10/1772 Freie University Berlin 3300011448 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 52.529611 13.401343 2379585 6118 0 0 1 0 SRX616517 0.0 Metagenome 3300045803 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - P3-R3-B DOE Joint Genome Institute (JGI) 3300045803 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.0477 370441975 690543 153 9 220 17 Unrestricted 10.64 Metagenome 3300010300 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNA DOE Joint Genome Institute (JGI) 3300010300 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes bcampb7@clemson.edu Barbara Campbell Yes 29703736 Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 37.0306 -76.0464 657494744 1505253 271 8 494 7 SRX2526854 Unrestricted 0.0 Metagenome 3300042518 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2017-rr0637 DOE Joint Genome Institute (JGI) 3300042518 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1217860781 1847699 501 122 693 175 Unrestricted 17.51 Metagenome 7000000057 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159571453 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000057 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 74505445 140014 0 0 0 0 0.0 Metagenome 3300036427 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T0 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036427 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 101050893 152444 71 11 88 11 SRX8128118, SRX8128117 Unrestricted 0.0 Metagenome 3300042565 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Aug2002-ww0182 DOE Joint Genome Institute (JGI) 3300042565 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 964185699 1472270 330 35 443 42 Unrestricted 15.98 Metagenome 3300026149 *Microbiome Permanent Draft Anaerobic reactors microbiome study Activated sludge microbial communities from full scale anaerobic digester from Wastewater Treatment Plant in Schifflange, Luxembourg - Seeding Sludge University of Luxembourg 3300026149 Metagenome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 49.514015 6.017262 307426136 384755 99 7 341 36 0.0 Metagenome 3300000591 *Microbiome Permanent Draft Groundwater microbial communities from well in New Jersey, USA Groundwater microbial communities from well in New Jersey, USA, that are chlorine contaminated, sample 1 University of California, Berkeley 3300000591 Metagenome Analysis released per JGI data release policy No Yes jtremblay@lbl.gov Julien Tremblay No Environmental Aquatic Drinking water Freshwater Chlorinated Groundwater 39.86 -74.34 41408347 70978 0 1 0 0 0.0 Metagenome 3300049228 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Oregon, USA - watershed01_2019_sed_WHONDRS-S19S_0068 DOE Joint Genome Institute (JGI) 3300049228 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 44.207316 -122.258091 349992187 789367 403 19 660 38 Unrestricted 10.91 Metagenome 3300042359 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME19Oct2016-rr0805 DOE Joint Genome Institute (JGI) 3300042359 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 545717647 879991 294 68 415 121 Unrestricted 17.71 Metagenome 3300005368 *Microbiome Permanent Draft Human periodontal pocket microbial communities from Stanford, California, USA Human periodontal pocket microbial communities from Stanford, California, USA - TM7b DOE Joint Genome Institute (JGI) 3300005368 Metagenome Analysis Newbler and Forge Assembly No Yes JGI automated process Yes 17620602 Host-associated Mammals: Human Oral cavity Digestive system Periodontal pockets Human oral 37.429308 -122.169514 112753 226 0 0 2 0 0.0 Metagenome 3300000309 *Microbiome Draft Wetland microbial communities from Twitchell Island in the Sacramento Delta Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk v2 DOE Joint Genome Institute (JGI) 3300000309 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes stringe@lbl.gov Susannah Tringe Yes 25991679 Environmental Aquatic Wetlands Marine Sediment Wetland 38.107057 -121.647578 208340005 570282 431 6 897 15 Unrestricted 0.0 Metagenome 3300006024 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B DOE Joint Genome Institute (JGI) 3300006024 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 631212662 1815610 665 37 1065 53 SRX2775955 Unrestricted 0.0 Metagenome 3300048875 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - P3-R2-B DOE Joint Genome Institute (JGI) 3300048875 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.0477 313856856 641519 124 8 227 9 Unrestricted 0.0 Metagenome 3300037836 *Microbiome Permanent Draft Seawater and sediment microbial communities from various locations Seawater microbial communities from eastern tropical North Pacific Ocean - AMALJGI-DNA-13 DOE Joint Genome Institute (JGI) 3300037836 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bbw@princeton.edu Bess Ward No Environmental Aquatic Oceanic Marine Unclassified seawater 16.0 -105.0 338270019 822772 416 324 716 542 SRX9400582 Unrestricted 9.64 Metagenome 3300007842 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 764447348 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007842 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 836123 2661 4 0 5 0 SRX024062 0.0 Metagenome 3300013459 *Microbiome Permanent Draft Lung microbial and viral communities from cystic fibrosis patients in San Diego, USA Lung microbial and viral communities from cystic fibrosis patients in San Diego, USA - CF1-2A-St-MgMD-nonhuman San Diego State University 3300013459 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Sputum/Phlegm Respiratory system Unclassified Human lung 7583924 14340 22 0 24 4 0.0 Metagenome 3300044528 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - FA_A001 DOE Joint Genome Institute (JGI) 3300044528 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.133 -62.888 983474137 2532818 384 5 801 7 Unrestricted 8.53 Metagenome 3300011189 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E6 #833 DOE Joint Genome Institute (JGI) 3300011189 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 329351461 641894 483 27 824 50 SRX2526863 Unrestricted 0.0 Metagenome 3300033065 *Microbiome Finished Seoul Wastewater Treatment Plant Virome, South Korea Freshwater viral community from Jungnang river, downstream of Jungnang wastewater treatment plant effluent, Seoul, South Korea - JLR-down v2 Macrogen 3300033065 Metagenome Analysis SPAdes v. 3.10.1 released by JGI data releasing policy No Yes chojc@inha.ac.kr Jang-Cheon Cho No Environmental Aquatic River Freshwater Unclassified freshwater 37.552545 127.052926 94843706 135919 0 0 0 0 0.0 Metagenome 3300013824 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01116 Weill Cornell Medical College 3300013824 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.89 20436842 34394 13 0 20 0 SRX823071 0.0 Metagenome 3300014541 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS44_12 University of Hohenheim 3300014541 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 94611170 139801 41 2 105 4 0.0 Metagenome 3300026991 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 M3 (2) (SPAdes) DOE Joint Genome Institute (JGI) 3300026991 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 66649125 92614 45 0 50 0 SRX3311650 Unrestricted 0.0 Metagenome 7000000292 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159369152 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000292 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 78148901 129808 0 0 0 0 0.0 Metagenome 3300007259 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 158337416 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007259 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 21757153 40109 16 0 29 0 0.0 Metagenome 3300026488 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in the Atlantic and Pacific Ocean Hydrothermal vent microbial communities from Guaymas Basin, Mexico - 4571-419 DOE Joint Genome Institute (JGI) 3300026488 Metagenome Analysis spades v. 3.11.1 Yes Yes pgirguis@oeb.harvard.edu Peter Girguis No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent 27.0105 111.40683 304035269 494359 217 3 253 3 SRX4801605 Unrestricted 50.93 Metagenome 3300003450 *Microbiome Permanent Draft Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S7-DC07A 3300003450 Metagenome Analysis released per JGI data releasing policy No Yes julie.champagne@cnrc-nrc.gc.ca Julie Champagne No Environmental Aquatic Neritic zone/Coastal water Marine Sediment Marine sediment 53.6667 -129.1333 35322702 131933 42 1 83 2 0.0 Metagenome 3300001180 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 DOE Joint Genome Institute (JGI) 3300001180 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 53220358 150117 127 15 224 23 SRX3312092 Unrestricted 0.0 Metagenome 3300049335 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC20 DOE Joint Genome Institute (JGI) 3300049335 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 64382431 184634 210 7 456 18 Unrestricted 28.13 Metagenome 3300005787 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS903_Marker113_DNA 3300005787 Metagenome Analysis Ray v. 2.3.1, minimum contig length 1kb released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com; elks@mit.edu Caroline Fortunato, Caroline Fortunato; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.92274 -129.988104 5625083 7668 2 1 3 2 0.0 Metagenome 2140918014 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in Juan de Fuca Ridge, Pacific Ocean Marine microbial communities from hydrothermal vents in Juan de Fuca Ridge - 3A2 Outer Chimney Duke University 2140918014 Metagenome Analysis released per JGI data release policy No Yes kfrank@mcb.harvard.edu Kiana Frank No Environmental Aquatic Hydrothermal vents Marine Unclassified Marine 47.9237593 -129.1090043 279430833 842566 124 1 475 0 0.0 Metagenome 3300046808 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Dobson Creek, Boise, Idaho, USA - dobsoncreek_2019_sw_WHONDRS-S19S_0087 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300046808 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 43.1231 -116.7745 668558150 1022386 232 133 368 170 Unrestricted 0.0 Metagenome 3300023492 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_158B University of California, Irvine 3300023492 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 104928652 101948 12 0 19 0 0.0 Metagenome 3300041828 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - A_35_wk_2 DOE Joint Genome Institute (JGI) 3300041828 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9785 -106.974 120433777 402298 271 12 450 19 SRX14808251 Unrestricted 5.92 Metagenome 3300012923 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG DOE Joint Genome Institute (JGI) 3300012923 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 2773006990 5555209 1412 55 2602 82 SRX3372603 Unrestricted 0.0 Metagenome 3300042758 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N3_10_20 NMDC pilot DOE Joint Genome Institute (JGI) 3300042758 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37379502 -119.2722385 88102698 233580 154 2 283 2 SRX2522537 0.0 Metagenome 3300005769 *Microbiome Permanent Draft Human lung microbial communities from healthy (non-smokers and smokers) and HIV infected subjects Human lung microbial communities from HIV infected subject HIV6-1 New York University Langone Medical Center 3300005769 Metagenome Analysis Shotgun released per JGI data release policy No Yes leopoldo.segal@nyumc.org Leopoldo N Segal No Host-associated Mammals: Human Lung Respiratory system Unclassified Lung Microbiome 40.7127 -74.0059 22758297 66286 0 2 0 1 0.0 Metagenome 3300000708 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 8 DOE Joint Genome Institute (JGI) 3300000708 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 17534181 33668 76 5 109 10 SRX4338377 Unrestricted 0.0 Metagenome 3300030382 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001530 CEA Genoscope 3300030382 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -12.9794 -96.0232 222126243 464142 27 0 38 0 0.0 Metagenome 3300070334 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_038-O-20180726-COMP-DNA1 3300070334 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 28807209 84720 45 0 69 0 0.0 Metagenome 3300027612 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_125SG_5_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027612 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 361117786 814325 314 80 558 137 Unrestricted 0.0 Metagenome 3300001462 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN112 DOE Joint Genome Institute (JGI) 3300001462 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 39.23550963 -121.2836963 66813 193 13 0 32 1 SRX3311727, SRX3311726 Unrestricted 0.0 Metagenome 3300012344 *Microbiome Permanent Draft Baboon gut microbial communities from fecal samples in Kenya Baboon gut microbial communities from fecal samples in Kenya - M10 Duke University 3300012344 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Baboon gut 2.717 37.1 108673165 216146 112 6 188 12 SRX834640 0.0 Metagenome 3300042437 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z081617_5554 DOE Joint Genome Institute (JGI) 3300042437 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.201 -97.9447 453644107 1242389 617 35 1205 70 Unrestricted 6.98 Metagenome 3300050500 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Bulk soil microbial communities from a Populus tree surrounding site in Tennessee, USA - Soil MetaG P. deltoides SBSDD4 re-annotation DOE Joint Genome Institute (JGI) 3300050500 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Environmental Terrestrial Tree plantation Soil Unclassified Bulk soil 35.8443 -83.9607 3227296715 7323322 1459 50 2640 67 SRX2840449 0.0 Metagenome 3300029498 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001976-107 Beijing Genomics Institute (BGI) 3300029498 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 80877085 83633 39 0 58 0 0.0 Metagenome 3300011167 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00434 Weill Cornell Medical College 3300011167 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.71 -73.83 23993914 44899 14 0 34 0 SRX822403 0.0 Metagenome 3300015342 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_09MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015342 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 302887834 520328 17 36 50 51 SRX3922230 Unrestricted 10.24 Metagenome 3300011841 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00609 Weill Cornell Medical College 3300011841 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.79 -73.94 43859540 65636 27 0 31 0 SRX822576 0.0 Metagenome 3300001004 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MMD3.0 DOE Joint Genome Institute (JGI) 3300001004 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 40.83194 2.44806 334105 953 3 11 3 22 SRX1981963 Unrestricted 0.0 Metagenome 3300029981 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N2_2 DOE Joint Genome Institute (JGI) 3300029981 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 628039879 1381379 964 117 1538 210 SRX5357459 Unrestricted 11.03 Metagenome 3300003534 *Microbiome Permanent Draft Petroleum reservoir microbial communities from Reconcavo Basin, Brazil, analyzing oil degradation Petroleum reservoir microbial communities from Reconcavo Basin, Brazil, analyzing oil degradation - Bahia-well BA-2 3300003534 Metagenome Analysis de novo assembly with CLC genomics released by JGI data releasing policy No Yes inatalia.sierra@gmail.com Isabel Natalia Sierra Garcia No Environmental Terrestrial Oil Oil reservoir Unclassified Petroleum reservoir -12.2 -38.11 58797639 112050 16 0 48 1 0.0 Metagenome 3300012203 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG DOE Joint Genome Institute (JGI) 3300012203 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 2589591295 5382654 1405 73 2621 141 SRX3373576 Unrestricted 0.0 Metagenome 3300035691 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 DOE Joint Genome Institute (JGI) 3300035691 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 39.6589 -79.9058 2526470863 6265999 1699 150 3064 251 SRX8289104 Unrestricted 7.63 Metagenome 3300000184 *Microbiome Permanent Draft Groundwater microbial communities from Oak Ridge Integrated Field Research Center, Tennessee, that are pristine and uranium contaminated Uranium contaminated groundwater from Oak Ridge Integrated Field Research Center, Tennessee (resequenced) DOE Joint Genome Institute (JGI) 3300000184 Metagenome Analysis Multi-kmar (19-31 bp kmer's) (soapdenovo) Released because this is a published project No Yes jzhou@ou.edu Zhou, Jizhong Yes 20182523 Environmental Aquatic Groundwater Freshwater Contaminated Groundwater 36.11569 -84.248657 3.7 59149803 119806 51 6 99 20 0.0 Metagenome 7000000714 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 158337416 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000714 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 1790000 1754 0 0 0 0 0.0 Metagenome 3300026283 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_4/24/2008_ DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026283 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 202807161 343212 133 9 177 15 SRX2518135 Unrestricted 0.0 Metagenome 3300069518 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_016-O-20170717-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069518 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 16964794 53409 56 8 109 9 0.0 Metagenome 3300001507 *Microbiome Permanent Draft Human axilla skin microbial communities from the University of Liverpool, UK Human axilla skin microbial communities from the University of Liverpool, UK - AX10 3300001507 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Host-associated Mammals: Human Skin Integumentary system Axilla/Armpit Human axilla skin 53.3484 -3.009 22342826 40209 25 0 57 1 0.0 Metagenome 3300043709 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - Rondonia_Forest_2_A10m DOE Joint Genome Institute (JGI) 3300043709 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.134 -62.889 642836432 1692781 292 7 598 8 Unrestricted 9.0 Metagenome 3300035227 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P4_June_2011_1000m DOE Joint Genome Institute (JGI) 3300035227 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 48.65 -126.6666 483840355 1203645 343 29 629 63 SRX8189196 Unrestricted 14.64 Metagenome 3300069565 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_001-M-20160809-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069565 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 17788115 52672 44 8 121 12 0.0 Metagenome 3300038607 *Microbiome Permanent Draft Oyster larvae and tank water microbial communities from oyster tank in Dauphin Island, Alabama, USA Water microbial communities from oyster tank in Dauphin Island, Alabama, USA - 125W U.S. Food and Drug Administration 3300038607 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Aquaculture Unclassified Water 30.25 -88.11 48556765 84280 78 1 69 0 0.0 Metagenome 3300038488 *Microbiome Permanent Draft Human fecal and environmental microbial communities from Peru and El Salvador Wastewater microbial communities from Lima, Peru - SW181 Washington University in St. Louis 3300038488 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27172044 Engineered WWTP Unclassified Wastewater Unclassified Wastewater -12.108 -77.056 26109236 60300 45 5 51 11 SRX1440998, SRX1441283 0.0 Metagenome 3300027585 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius algarvensis Type A CAVOLI.3 (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300027585 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 582813252 702148 6 1 6 1 SRX2713110 Unrestricted 0.0 Metagenome 3300041466 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover leaf microbial community from Lincoln, Canterbury, New Zealand - WCL17_2 MetaG AgResearch, New Zealand, Mosgeil 3300041466 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 544717024 627681 53 1254 110 1896 0.0 Metagenome 3300038991 *Microbiome Finished Crude oil contaminated agricultural soil mecrobial communities from various regions in India Soil microbial community of crude oil contaminated soil of Duliajan region, Assam, India - D3 Eurofins Genomics India Pvt Ltd. 3300038991 Metagenome Analysis CLC Genomic workbench v. 9.5.2 released by JGI data releasing policy No Yes nanditadas753@gmail.com nandita das No Environmental Terrestrial Unclassified Soil Oil-contaminated Soil 27.3572 95.3223 236090401 378528 72 13 125 14 0.0 Metagenome 3300069359 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_005-M-20160726-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069359 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 15506594 49360 69 0 159 1 0.0 Metagenome 3300012669 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ487 (21.06) DOE Joint Genome Institute (JGI) 3300012669 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.0845 163.7452 18604340 46280 29 0 17 0 SRX3372244 Unrestricted 0.0 Metagenome 3300012136 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Georgia, USA - TSGA069 MetaG DOE Joint Genome Institute (JGI) 3300012136 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 33.0113 -81.8994 145567995 253198 73 44 101 73 SRX3539712 Unrestricted 0.0 Metagenome 3300050187 *Microbiome Permanent Draft Plant-associated microbial communities from Atacama desert, Huara, Chile Plant-associated microbial communities from Atacama desert, Huara, Chile - Equisetum (CHI) University of Wisconsin, Madison 3300050187 Metagenome Analysis Custom JGI assembly. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Plants Unclassified Phyllosphere Unclassified Plant-associated -19.198696 -70.043582 80041890 160747 39 5 72 4 SRX6486516 0.0 Metagenome 3300034125 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15 DOE Joint Genome Institute (JGI) 3300034125 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9095 -147.9448 500143475 1286544 420 0 734 2 SRX7633776 Unrestricted 8.47 Metagenome 3300042050 *Microbiome Permanent Draft Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - I_c8.4 Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042050 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1237 -89.1404 748028191 765355 2 6 4 14 SRX5234775 0.0 Metagenome 3300060356 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_27CD DOE Joint Genome Institute (JGI) 3300060356 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.3761 -106.1002 2635470088 4488668 803 97 1418 121 SRX20650062 Unrestricted 0.0 Metagenome 3300029474 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001893-50 Beijing Genomics Institute (BGI) 3300029474 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 137905142 168214 108 0 177 0 0.0 Metagenome 3300039345 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 18_B Beijing Genomics Institute (BGI) 3300039345 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 35330446 35207 15 0 28 0 ERX490987 0.0 Metagenome 3300004807 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug07 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300004807 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 625040368 1578148 328 213 507 651 SRX2518391 Unrestricted 0.0 Metagenome 3300045201 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_4_E DOE Joint Genome Institute (JGI) 3300045201 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 184427302 220876 108 1 139 2 Unrestricted 97.75 Metagenome 3300053034 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - ATCcR2D-21 DOE Joint Genome Institute (JGI) 3300053034 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 606772037 1022302 380 37 546 53 Unrestricted 0.0 Metagenome 3300048621 *Microbiome Permanent Draft Enriched green algae-associated microbial communities from Montana State University, Bozeman, MT, USA Enriched green algae-associated microbial communities from Montana State University, Bozeman, MT, USA - SLA-IM-Rep2 DOE Joint Genome Institute (JGI) 3300048621 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes robin_g@montana.edu Robin Gerlach No Host-associated Algae Unclassified Green algae Unclassified green algae 45.6655 -111.0466 66877522 93237 12 1 16 5 Unrestricted 695.54 Metagenome 3300029293 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Indian Ocean - SCH2 Michigan State University 3300029293 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 1.26600833 103.8333333 71446103 193775 16 1 62 7 0.0 Metagenome 3300052899 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Colorado, USA - CP_C3_S1 DOE Joint Genome Institute (JGI) 3300052899 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 39.94414 -105.93544 175086362 342181 185 22 363 31 Unrestricted 38.08 Metagenome 3300027357 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027357 Metagenome Analysis spades v. 3.11.1 Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Host-associated Plants Nodule Roots Unclassified Root nodules 34.0722 -118.4441 485645794 438727 21 21 23 39 SRX2752612 Unrestricted 0.0 Metagenome 3300019843 *Microbiome Permanent Draft Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil - Edson_C3 Center for Advanced Technologies in Genomics, Sao Paulo University 3300019843 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 32205459 57534 60 0 83 0 0.0 Metagenome 3300030491 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E3_3 DOE Joint Genome Institute (JGI) 3300030491 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 586454378 1427420 690 76 1026 89 SRX5799337 Unrestricted 9.75 Metagenome 3300015068 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8C, Adjacent to main proglacial river, end of transect (Watson river)) University of Bristol 3300015068 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.056923 -50.459608 60773858 134658 85 12 132 17 0.0 Metagenome 3300070693 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Colorado, USA - CPER_048-M-20180702-COMP-DNA1 3300070693 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 61746199 173805 133 11 273 7 0.0 Metagenome 3300006527 *Microbiome Permanent Draft Microbial communities of sponge Agelas tubulata from Florida Keys, Florida, USA Microbial communities of sponge Agelas tubulata from Florida Keys, Florida, USA University of California, San Diego 3300006527 Metagenome Analysis IDBA released by JGI data releasing policy No Yes abrahim.eg@gmail.com, spodell@ucsd.edu Abrahim El Gamal, Sheila Podell Yes 30291328 Host-associated Porifera Unclassified Sponge Unclassified marine 24.6017187 -82.4936922 248244242 314071 52 1 47 2 0.0 Metagenome 3300045921 *Microbiome Permanent Draft Microbial mat bacterial communities from hot springs in Waikite Valley, Taupo Volcanic Zone, New Zealand Microbial mat bacterial communities from hot spring in Waikite Valley, New Zealand - LMW_ETR_NZ_2018_Waikite_2_2 DOE Joint Genome Institute (JGI) 3300045921 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes LMWARD@post.harvard.edu Lewis Ward No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats microbial mat -38.3276 176.3016 768274586 994973 349 10 432 14 Unrestricted 56.66 Metagenome 3300060648 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Yellowstone NP, Wyoming, USA - YELL_002-M-20210706-comp-1 DOE Joint Genome Institute (JGI) 3300060648 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 44.932467 -110.634896 559493798 1017974 363 32 716 52 Unrestricted 20.87 Metagenome 3300010155 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG DOE Joint Genome Institute (JGI) 3300010155 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.509 -76.201 664948506 1577015 67 0 88 0 SRX3197249, SRX3197248 Unrestricted 0.0 Metagenome 3300032115 *Microbiome Permanent Draft Microbial communities from the deep biosphere Marine sediment microbial communities from the Haakon Mosby mud volcano in the Barents Sea, Arctic Ocean - MSM16_2_855_1_MUC re-assembly The Marine Biological Laboratory 3300032115 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Mud volcano Marine Sediment Sediment 72.003 14.732 257015747 732404 214 42 344 62 SRX993399, SRX549994, SRX550010 0.0 Metagenome 7000000554 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764447348 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000554 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 100318872 172461 0 0 0 0 0.0 Metagenome 3300020207 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101406AT metaG (spades assembly) DOE Joint Genome Institute (JGI) 3300020207 Metagenome Analysis spades v. 3.10.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1097368404 2188366 423 50 650 80 SRX3919531 Unrestricted 30.67 Metagenome 3300052655 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Photosynthetic mat viral communities from Mushroom Spring, YNP, Wyoming, United States - MS20090730 R6b DOE Joint Genome Institute (JGI) 3300052655 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified hot spring phototrophic mat 44.5387 -110.798 14850527 24833 7 0 16 0 Unrestricted 1349.18 Metagenome 3300069437 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Mid-Atlantic, VA, USA - SCBI_003-M-20140915-COMP-DNA1 re-annotation Argonne National Laboratory 3300069437 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89292 -78.1395 3048404 9771 45 4 83 6 ERX2133983 0.0 Metagenome 3300044783 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_124 DOE Joint Genome Institute (JGI) 3300044783 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 875247091 1960973 468 16 869 14 Unrestricted 8.32 Metagenome 3300033550 *Microbiome Permanent Draft Soil microbial communities from agricultural site in Penn Yan, New York, United States Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4 DOE Joint Genome Institute (JGI) 3300033550 Metagenome Analysis spades v. 3.12.0 Yes Yes dbuckley@cornell.edu Dan Buckley No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.673 -77.032 3649666348 9139951 1626 49 2693 97 SRX5785986 Unrestricted 28.99 Metagenome 7000000430 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763435843 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000430 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 18115405 34901 0 0 0 0 0.0 Metagenome 3300027439 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027439 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 221873889 527438 205 46 354 71 SRX3312035 Unrestricted 0.0 Metagenome 3300001116 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 DOE Joint Genome Institute (JGI) 3300001116 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 23208599 45243 83 13 164 8 SRX3311916 Unrestricted 0.0 Metagenome 3300005962 *Microbiome Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring cone microbial streamer communities from Mammoth Hot Spring (Liberty Cap Streamers), Yellowstone National Park, USA - T=72 v2 (version 2) DOE Joint Genome Institute (JGI) 3300005962 Metagenome Analysis SPADES v3.5.0 released based on JGI ITS Yes Yes nnivanova@lbl.gov, jim.fredrickson@pnnl.gov Natasha Ivanova, Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring cone 44.972867 -110.704443 6.5 28591104 47558 26 0 46 0 Unrestricted 0.0 Metagenome 3300049423 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River, Colorado, USA - Glucose_Short DOE Joint Genome Institute (JGI) 3300049423 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 233770957 586713 358 9 503 15 Restricted 13.87 Metagenome 3300003226 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-B DOE Joint Genome Institute (JGI) 3300003226 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 1560099 4992 19 3 34 10 SRX2575557 Unrestricted 0.0 Metagenome 3300031562 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3 DOE Joint Genome Institute (JGI) 3300031562 Metagenome Analysis spades v. 3.12.0 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Bulk soil soil 39.6475 -79.9369 2150449660 5429091 1404 30 2668 64 SRX5661732 Unrestricted 7.4 Metagenome 3300023230 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1692 DOE Joint Genome Institute (JGI) 3300023230 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 116684467 220882 77 53 93 60 SRX4397718 Unrestricted 17.59 Metagenome 3300035036 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B3.4_Sample3.Rodeo4.Well667 DOE Joint Genome Institute (JGI) 3300035036 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 69829225 111336 72 0 128 0 SRX8353091 Unrestricted 177.37 Metagenome 3300025288 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 3 um filter (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025288 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 1227808791 1988459 1014 26 1418 33 SRX2770553 Unrestricted 0.0 Metagenome 3300011243 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00481 Weill Cornell Medical College 3300011243 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.81 -73.9 53939321 97932 39 0 59 0 SRX822450 0.0 Metagenome 3300059773 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059773 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2327 -123.9168 125524286 300975 166 23 269 37 SRX2753611 Unrestricted 0.0 Metagenome 3300033434 *Microbiome Permanent Draft Wetland soil microbial communities from various locations Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_b DOE Joint Genome Institute (JGI) 3300033434 Metagenome Analysis spades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified soil 41.3777 -82.5117 2675889204 6554350 1876 16 3170 28 SRX6871054 Unrestricted 25.14 Metagenome 3300049302 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA5 DOE Joint Genome Institute (JGI) 3300049302 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 258272679 653677 300 5 553 6 Unrestricted 7.1 Metagenome 3300003906 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius vacuus BAHAMAS.2 DOE Joint Genome Institute (JGI) 3300003906 Metagenome Analysis Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 53.109679 8.847516 453547918 1107404 3 2 8 16 SRX2577643 Unrestricted 0.0 Metagenome 3300019937 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States - IW29Aug16_MG DOE Joint Genome Institute (JGI) 3300019937 Metagenome Analysis spades v. 3.10.1 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Unclassified freshwater 38.7906 -75.1638 112397186 287245 214 24 312 36 SRX3983589 Unrestricted 22.59 Metagenome 3300002044 *Microbiome Permanent Draft Soil microbial communities from Amlakhadi River, Gujarat, India Soil microbial communities from Amlakhadi River, Gujarat, India - Sample 7 3300002044 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Aquatic River Freshwater Sediment Soil 21.636337 72.989458 0 0 0 0 0 0 0.0 Metagenome 3300012801 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - DID2878_E24_Lignin MG DOE Joint Genome Institute (JGI) 3300012801 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie Yes 29545786 Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 57746371 80856 60 0 85 0 SRX3564732 Unrestricted 0.0 Metagenome 3300007301 *Microbiome Permanent Draft Hydrothermal vent microbial communities from Teddy Bear hydrothermal vent, East Pacific Rise Hydrothermal vent microbial communities from Teddy Bear hydrothermal vent, East Pacific Rise - large volume pump, sample 5 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300007301 Metagenome Analysis MEGAHit released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal fluid 9.847222 -104.2975 249394076 681701 943 38 1672 69 0.0 Metagenome 3300070305 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_006-M-20191003-COMP-DNA1 3300070305 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 9843011 30885 46 0 88 5 0.0 Metagenome 3300027745 *Microbiome Permanent Draft Thawing permafrost microbial communities from the Arctic, studying carbon transformations Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2M (version 2) DOE Joint Genome Institute (JGI) 3300027745 Metagenome Analysis spades v. 3.11.1 Yes Yes rich.270@osu.edu Virginia Rich Yes 30013118 Environmental Terrestrial Wetlands Soil Permafrost Thawing permafrost 68.3534 19.0473 520247919 1459012 130 9 203 38 SRX2774886 Unrestricted 0.0 Metagenome 3300035115 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 DOE Joint Genome Institute (JGI) 3300035115 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 39.6589 -79.9058 1201773974 3241507 1179 100 2116 188 SRX8289427 Unrestricted 6.6 Metagenome 3300057126 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2019-0011 DOE Joint Genome Institute (JGI) 3300057126 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.75722222 -83.32833333 362064974 662347 109 99 171 130 Unrestricted 39.86 Metagenome 7000000552 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit number 3 of subject 158883629 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000552 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 18688392 37567 0 0 0 0 0.0 Metagenome 3300014025 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S13-04-R University of California, Los Angeles 3300014025 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 162485660 228102 127 0 178 0 SRX862787 0.0 Metagenome 3300001035 *Microbiome Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI - Accumulibacter clade IA genome-pooled fosmids DOE Joint Genome Institute (JGI) 3300001035 Metagenome Analysis released based on JGI ITS No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Wastewater treatment 43.078418 -89.386482 7-7.5 3467620 3488 2 0 4 0 Unrestricted 0.0 Metagenome 3300039438 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 DOE Joint Genome Institute (JGI) 3300039438 Metagenome Analysis MEGAHIT v. 1.2.7 Released on PI's request No Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Host-associated Plants Rhizosphere Roots Unclassified rhizosphere -19.2822 -43.5936 1193292699 2129097 916 54 1753 94 SRX4020302 0.0 Metagenome 3300044911 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME08Aug2017-rr0936 DOE Joint Genome Institute (JGI) 3300044911 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1250268813 1852944 444 128 609 173 Unrestricted 15.56 Metagenome 3300061203 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Great Basin, Onaqui, Utah, USA - ONAQ_005-M-20210527-comp-1 DOE Joint Genome Institute (JGI) 3300061203 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Shrubland Soil Unclassified Terrestrial soil 40.180775 -112.431854 705527840 1294377 407 10 784 11 Unrestricted 20.51 Metagenome 3300030109 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_068 - TARA_R100000995 CEA Genoscope 3300030109 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -31.027 4.6802 204984262 429726 11 1 21 5 0.0 Metagenome 3300035168 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 17_7.5_C_13_2 DOE Joint Genome Institute (JGI) 3300035168 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1863 -2.2145 1591101004 3781975 397 3 674 12 SRX8234407 Unrestricted 10.15 Metagenome 3300021551 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge Stylissa sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - st43is 200bp no Eukaryotes last University of New South Wales 3300021551 Metagenome Analysis IDBA-UD released by Emmanuelle BOTTE Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Sylissa sp. (marine sponge) -9.8241 150.825833 124148667 202273 22 9 49 18 0.0 Metagenome 3300031564 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21 DOE Joint Genome Institute (JGI) 3300031564 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1567031224 3778747 536 6 984 12 SRX5665952 Unrestricted 12.41 Metagenome 3300060897 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Chase Lake Wetlands, North Dakota, USA - WOOD_001-M-20210714-comp-1 DOE Joint Genome Institute (JGI) 3300060897 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 47.128258 -99.257768 1477232773 2601334 525 21 925 37 Unrestricted 16.25 Metagenome 3300002962 *Microbiome Permanent Draft Human blood microbial communities from Yonsei University, South Korea, of septic patients Human blood microbial communities from Yonsei University, South Korea 3300002962 Metagenome Analysis released by JGI data releasing policy No Yes roshanbernard@gmail.com Roshan D'Souza No Host-associated Mammals: Human Blood Circulatory system Unclassified Human blood 37.5612 126.939 0 0 0 0 0 0 0.0 Metagenome 3300011423 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2 DOE Joint Genome Institute (JGI) 3300011423 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9778 -107.003 351760556 767562 339 29 679 48 SRX3539321 Unrestricted 0.0 Metagenome 3300039106 *Microbiome Permanent Draft Freshwater microbial communities from Klamath Basin, USA Freshwater microbial communities from Iron Gate Dam, Klamath Basin, California, USA - IR118 Oregon State University 3300039106 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.93 -122.44 120711374 275118 60 13 119 17 0.0 Metagenome 3300005964 *Microbiome Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Ferrous microbial mat and aquatic microbial communities from Echinus Geyser, Yellowstone National Park, USA - transect B T=78-80 C v2 (version 2) DOE Joint Genome Institute (JGI) 3300005964 Metagenome Analysis SPADES v3.5.0 released based on JGI ITS Yes Yes nnivanova@lbl.gov, jim.fredrickson@pnnl.gov Natasha Ivanova, Jim Fredrickson No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Ferrous microbial mat and aquatic 44.7220558 -110.7021057 71870672 112613 36 0 47 0 Unrestricted 0.0 Metagenome 3300027896 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from the University of Notre Dame, USA, of lakes that contribute to methane emissions Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027896 Metagenome Analysis spades v. 3.11.1 Yes Yes sjones20@nd.edu Stuart Jones No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 41.7 -86.23 2356727548 4869260 1305 57 2206 71 SRX2576302 Unrestricted 0.0 Metagenome 3300033432 *Microbiome Permanent Draft Lab enriched peat soil microbial communities from two peatlands near Ithaca, NY, United States Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF6AY SIP fraction DOE Joint Genome Institute (JGI) 3300033432 Metagenome Analysis spades v. 3.13.0 Yes Yes rer26@cornell.edu Ruth Richardson No Environmental Terrestrial Wetlands Soil Peat peat soil 42.3286 -76.4792 164693393 375451 73 0 109 0 SRX6468744 Unrestricted 11.97 Metagenome 3300007113 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina ""bubble"" site, Water-is" University of New South Wales 3300007113 Metagenome Analysis IDBA-UD released by Emmanuelle BOTTE Yes Yes n.webster@aims.gov.au Nicole Webster No Environmental Aquatic Volcanic Marine Unclassified Volcanic CO2 seep seawater -9.8241 150.825833 174775042 438268 158 1 335 2 0.0 Metagenome 3300049304 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA9 DOE Joint Genome Institute (JGI) 3300049304 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 170471141 453958 280 3 522 3 Unrestricted 6.27 Metagenome 3300003446 *Microbiome Permanent Draft Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S18-KH04C 3300003446 Metagenome Analysis released per JGI data releasing policy No Yes julie.champagne@cnrc-nrc.gc.ca Julie Champagne No Environmental Aquatic Neritic zone/Coastal water Marine Sediment Marine sediment 53.6667 -129.1333 30334332 106791 39 0 79 0 0.0 Metagenome 3300002042 *Microbiome Permanent Draft Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease - 2012_LB_B1 3300002042 Metagenome Analysis IDBA-UD + SOAPdenovo + GAA made public per user request (Enrique Zozaya - 05/02/16 email) No Yes t.thomas@unsw.edu.au Torsten Thomas Yes 28419766 Host-associated Algae Ectosymbionts Red algae Unclassified Delisea pulchra -33.57 151.15 895471522 3029783 193 84 442 153 0.0 Metagenome 3300049243 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB25 DOE Joint Genome Institute (JGI) 3300049243 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 219147203 547067 438 8 935 15 Unrestricted 26.59 Metagenome 3300041937 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from the Rocky Mountain Biological Laboratory (RMBL), Gothic, Colorado, United States - 2009WM_9C DOE Joint Genome Institute (JGI) 3300041937 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9595 -106.99 71584992 234298 171 26 374 36 SRX14811910 Unrestricted 6.35 Metagenome 3300008664 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 158337416 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008664 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 175870299 217923 147 0 171 0 0.0 Metagenome 3300050455 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - W4W0 DOE Joint Genome Institute (JGI) 3300050455 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 129505852 240329 216 65 391 81 Unrestricted 17.69 Metagenome 3300036931 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 E1 20-24 DOE Joint Genome Institute (JGI) 3300036931 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0467 1127692107 2187730 535 11 950 18 SRX8138390 Unrestricted 10.15 Metagenome 3300005044 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0048 University of Michigan 3300005044 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lentic Freshwater Unclassified Freshwater, plankton 41.7026 -83.236 188474259 321161 92 50 147 98 0.0 Metagenome 3300036776 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C5-9A DOE Joint Genome Institute (JGI) 3300036776 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 149497760 467310 315 5 530 8 SRX8803307 Unrestricted 4.7 Metagenome 7000000278 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 160158126 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000278 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 66125498 109547 0 0 0 0 0.0 Metagenome 3300044543 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_CSTR_072 DOE Joint Genome Institute (JGI) 3300044543 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 96053020 138641 88 1 137 2 SRX12655142 Unrestricted 166.36 Metagenome 3300039831 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Taiga, AK, USA - HEAL_011-O-20170726-COMP-DNA1 Battelle Memorial Institute 3300039831 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.87569 -149.21334 28437370 79501 77 1 132 2 0.0 Metagenome 3300047463 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Amazon River, Obidos, Brazil - ROCA156 DOE Joint Genome Institute (JGI) 3300047463 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater -1.919 -55.5257 553012203 1245195 467 32 817 50 Unrestricted 17.43 Metagenome 3300000182 *Microbiome Permanent Draft Wastewater treatment microbial communities from EBPR bioreactor at Univ of Illinois, Urbana Champaign, that are accumulating glycogen and are tetrad forming Tetrad forming microbial communities from wastewater bioreactor at Univ of Illinois, Urbana Champaign - 888 (TFO_454_Illumina) Bin University of Illinois, Urbana-Champaign 3300000182 Metagenome Analysis Newbler released per JGI data release policy No Yes t.hideyuki@gmail.com Hideyuki Tamaki No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Wastewater treatment 40.114101 -88.227124 11116812 14113 0 0 0 0 0.0 Metagenome 3300023478 *Microbiome Permanent Draft Marine microbial mats from Loihi Seamount, Hawaii, USA Marine microbial mats from Loihi Seamount, Hawaii, USA - Marker 57 Individual Assembly Oregon Health and Science University (OHSU) 3300023478 Metagenome Analysis metaSPAdes v. 3.10.0 Metagenomes associated with bioRxiv doi:10.1101/722066 Yes Yes hfullerton@gmail.com; cmoyer@hydro.biol.wwu.edu; mcallis@uw.edu Heather Fullerton; Craig Moyer; Sean McAllister No Environmental Aquatic Hydrothermal vents Marine Microbial mats Marine 18.903 -155.257 48373600 87549 25 0 40 0 0.0 Metagenome 7000000712 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 370425937 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000712 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 62953293 95357 0 0 0 0 0.0 Metagenome 3300025129 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-10 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025129 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 674186663 1200297 623 24 980 36 SRX3198137 Unrestricted 0.0 Metagenome 3300035447 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_1_27_6 mgh University of Alberta 3300035447 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 73099331 91707 31 1 38 1 0.0 Metagenome 3300043536 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P10_D5 (version 2) DOE Joint Genome Institute (JGI) 3300043536 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 617588118 853133 160 3 229 5 Unrestricted 0.0 Metagenome 3300005660 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB14_precipitate DOE Joint Genome Institute (JGI) 3300005660 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 1665244569 4127313 1485 69 2396 109 SRX2838877 Unrestricted 0.0 Metagenome 3300032227 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime Ecozone, Canada - Lake 07-049 Genome Quebec 3300032227 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.896289 -67.430162 815108847 1605539 465 107 788 198 0.0 Metagenome 3300024458 *Microbiome Permanent Draft Vaginal microbial communities from lab mice Vaginal microbial communities from healthy lab mice, Madrid, Spain - A3, day 1 Polytechnic University of Valencia 3300024458 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Vagina Reproductive system Unclassified mice vagina 40.4191094 -3.6725753 934140 1454 0 0 0 0 0.0 Metagenome 3300038371 *Microbiome Permanent Draft Ice-cream associated microbial communities from Maryland, United States Ice-cream associated microbial communities from Maryland, United States - 8 _R2 U.S. Food and Drug Administration 3300038371 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Ice-cream associated 38.98 -76.93 17140337 36873 32 0 44 0 0.0 Metagenome 3300018049 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300018049 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1707127601 3792485 1180 96 1906 158 SRX4071900 Unrestricted 16.41 Metagenome 3300012948 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama - MetaG Plot_14 DOE Joint Genome Institute (JGI) 3300012948 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes cpan@ou.edu Chongle Pan No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 9.1086 -79.8436 3063152868 7115837 1659 45 3327 115 SRX3291960 Unrestricted 0.0 Metagenome 3300042201 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D0_2 DOE Joint Genome Institute (JGI) 3300042201 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 355531541 551130 179 0 242 0 Unrestricted 19.06 Metagenome 3300012015 *Microbiome Permanent Draft Terrestrial microbial communites from a soil warming plot in Okalahoma, USA Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C3.rep1 Georgia Institute of Technology 3300012015 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial 34.975667 -97.519 298933169 1009484 104 3 252 15 SRX352027 0.0 Metagenome 3300000251 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P16 500m DOE Joint Genome Institute (JGI) 3300000251 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 49.283333 -134.666667 97916811 258103 116 24 204 35 Unrestricted 0.0 Metagenome 3300015687 *Microbiome Permanent Draft Microbial communities associated with sugarcane Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 002.1_G08 Universidade Estadual de Campinas 3300015687 Metagenome Analysis SPADES released by JGI data releasing policy No Yes scs.rafael@gmail.com Rafael Souza No Host-associated Plants Rhizosphere Roots Unclassified rizhosphere -22.8187222 -47.05896667 9868285 9477 9 0 10 0 0.0 Metagenome 3300029472 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001955-57 Beijing Genomics Institute (BGI) 3300029472 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 129477436 155095 94 0 143 0 0.0 Metagenome 3300030055 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N3_1 DOE Joint Genome Institute (JGI) 3300030055 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 876419832 1844579 794 160 1194 231 SRX5799148 Unrestricted 12.65 Metagenome 3300046026 *Microbiome Permanent Draft Halite microbial communities from Atacama Desert, Chile Halite microbial communities from Alma, Atacama Desert, Chile - AL3 Novogene 3300046026 Metagenome Analysis metaWRAP v. 1.3.2 No Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Halite Rock-dwelling (endoliths) Unclassified Halite -23.076 -67.982 149041078 178759 19 1 25 1 0.0 Metagenome 3300012068 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC073 MetaG DOE Joint Genome Institute (JGI) 3300012068 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 34.6816 -78.5956 93613006 175144 88 114 141 215 SRX3539714 Unrestricted 0.0 Metagenome 3300027986 *Microbiome Permanent Draft Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027986 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade Yes 30397342 Environmental Terrestrial Unclassified Soil Unclassified Surface soil 40.7999 -76.3402 1233484435 2628428 676 27 1217 66 SRX2837984 Unrestricted 0.0 Metagenome 3300070938 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_048-M-20171107-COMP-DNA1 3300070938 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 58532983 160297 79 2 169 9 0.0 Metagenome 3300042921 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D185_1 DOE Joint Genome Institute (JGI) 3300042921 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 142741883 189576 82 8 109 14 Unrestricted 74.79 Metagenome 3300000460 *Microbiome Permanent Draft Honey bee gut microbial communities from West Haven, Conneticut, USA Honey bee gut microbial communities from West Haven, Conneticut, USA - Snodgrassella SCG AB-598-O02 Broad Institute 3300000460 Metagenome Analysis released per JGI data release policy No Yes philipp.engel@yale.edu Philipp Engel No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Honey bee gut 32.2743 -110.9388 2057077 3408 2 0 3 0 0.0 Metagenome 3300040637 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Moab, Southern Rockies & Colorado Plateau, UT, USA - MOAB_003-M-20160727-COMP-DNA1 Battelle Memorial Institute 3300040637 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.24833 -109.38827 2425795 7565 42 5 74 12 0.0 Metagenome 3300033290 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15 DOE Joint Genome Institute (JGI) 3300033290 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 2191566731 5545034 747 4 1313 19 SRX5818054 Unrestricted 14.69 Metagenome 3300009145 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_D1_MG DOE Joint Genome Institute (JGI) 3300009145 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Soil 37.4973 -122.1295 344897500 745508 446 20 880 36 SRX2523924 Unrestricted 0.0 Metagenome 3300008748 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160178356 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008748 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 131008860 183057 100 0 124 0 0.0 Metagenome 3300013822 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00894 Weill Cornell Medical College 3300013822 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.94 18113605 25523 18 0 24 0 SRX822857 0.0 Metagenome 3300006022 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-1 DOE Joint Genome Institute (JGI) 3300006022 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Host-associated Plants Endosphere Roots Unclassified Populus endosphere 35.8443 -83.9607 14524272 63908 61 12 92 29 SRX2748471 Unrestricted 0.0 Metagenome 3300024253 *Microbiome Permanent Draft Metagenomes from 1,2,4-trichlorobenzene dechlorinating enrichment cultures Lab enriched microbial communities from a contaminated site in Ontario, Canada - KB1TCB_rich_medium University of Toronto 3300024253 Metagenome Analysis megahit v. 1.1.1 released by Luz Puentes Jacome Yes Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Engineered Lab enrichment Anaerobic media Defined media Unclassified Laboratory enrichment culture 43.65699737 79.39033177 77393267 115041 100 0 113 0 0.0 Metagenome 3300049189 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - A25_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049189 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 366860613 801927 483 16 801 27 Unrestricted 0.0 Metagenome 3300037499 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_051817_80_90_jgi DOE Joint Genome Institute (JGI) 3300037499 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 1920023951 3013865 594 15 946 17 SRX9162001 Unrestricted 13.86 Metagenome 3300007844 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 686765762 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007844 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 3412892 9255 4 0 9 0 0.0 Metagenome 3300059730 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059730 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.234 -123.9135 350056807 869351 194 19 310 37 SRX2838061 Unrestricted 0.0 Metagenome 3300031833 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178 DOE Joint Genome Institute (JGI) 3300031833 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 2063484449 4627610 661 28 1234 52 SRX5820640 Unrestricted 9.7 Metagenome 3300009538 *Microbiome Permanent Draft Microbial Role in Biogeochemical Cycling in a Beach Aquifer System Microbial community of beach aquifer porewater from Cape Shores, Lewes, Delaware, USA - H-2W University of Delaware 3300009538 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes fielde14@ecu.edu Erin Field No Environmental Aquatic Unclassified Unclassified Unclassified beach aquifer porewater 38.7855 -75.1045 6.5 989655170 2213722 1858 40 3256 53 0.0 Metagenome 2140918012 *Microbiome Permanent Draft Freshwater sediment microbial communities from Lake Washington, Seattle, USA, for methane and nitrogen cycles Sediment microbial communities from Lake Washington, Seattle, for Methane and Nitrogen Cycles, sample from flow sorted anaerobic no nitrate DOE Joint Genome Institute (JGI) 2140918012 Metagenome Analysis Newbler released based on JGI ITS No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova Yes 23638358 Environmental Aquatic Lentic Freshwater Sediment Freshwater sediment 47.676484 -122.228394 47869084 96914 72 1 168 0 Unrestricted 0.0 Metagenome 7000000473 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit number 3 of subject 159510762 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000473 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 3063682 7273 0 0 0 0 SRX023371 0.0 Metagenome 3300023494 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_85A University of California, Irvine 3300023494 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 105276581 104534 16 1 17 1 0.0 Metagenome 3300033405 *Microbiome Permanent Draft Lab enriched peat soil microbial communities from two peatlands near Ithaca, NY, United States Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY DOE Joint Genome Institute (JGI) 3300033405 Metagenome Analysis spades v. 3.13.0 Yes Yes rer26@cornell.edu Ruth Richardson No Environmental Terrestrial Wetlands Soil Peat peat soil 42.5488 -76.2662 3110244180 4898838 1134 23 1606 37 SRX6469109 Unrestricted 22.22 Metagenome 3300026371 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-B DOE Joint Genome Institute (JGI) 3300026371 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 126906006 342519 193 9 374 15 SRX4804098 Unrestricted 10.16 Metagenome 3300011335 *Microbiome Finished Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman Chunlab, Inc 3300011335 Metagenome Analysis SPAdes 3.8.2 released by JGI data releasing policy No Yes chojc@inha.ac.kr; krmoon518@gmail.com Jang-Cheon Cho; Kira Moon No Environmental Aquatic River Freshwater Unclassified Freshwater 38.0874861 127.761456 20831307 29694 0 0 0 0 0.0 Metagenome 3300002787 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A3a-10 DOE Joint Genome Institute (JGI) 3300002787 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 1000947 3376 48 2 81 2 SRX1991107 Unrestricted 0.0 Metagenome 7000000294 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 246515023 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000294 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 5129443 12036 0 0 0 0 0.0 Metagenome 3300023273 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (version 2) DOE Joint Genome Institute (JGI) 3300023273 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 749273445 1358689 330 42 478 58 SRX4074069 Unrestricted 32.75 Metagenome 3300025096 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025096 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -11.499 -81.405 259916078 589635 30 0 44 0 SRX2926778 Unrestricted 0.0 Metagenome 3300046513 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere DOE Joint Genome Institute (JGI) 3300046513 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5878 -123.1936 619319536 949136 201 57 315 77 Unrestricted 19.12 Metagenome 3300030384 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Sweden Biosolids microbial communities from sewage treatment plant in Sweden - SWESTP60 - Kappala-digested 216 University of Gothenburg 3300030384 Metagenome Analysis Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified biosolids 59.355554 18.227079 242949597 401419 204 2 376 1 0.0 Metagenome 3300070332 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt-Chequamegon, Wisconsin, USA - STEI_059-M-20160720-COMP-DNA1 3300070332 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 1636618 5397 19 0 37 3 0.0 Metagenome 3300027614 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027614 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 288186957 798553 469 33 861 71 SRX2574410 Unrestricted 0.0 Metagenome 3300001464 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN91 DOE Joint Genome Institute (JGI) 3300001464 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 39.23550963 -121.2836963 8234805 9296 24 0 42 2 SRX1986450, SRX1986449 Unrestricted 0.0 Metagenome 3300043600 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains ecozone, Canada - Lake 08-148 Genome Quebec 3300043600 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.494194 -76.413815 1159563714 2586081 415 182 671 312 0.0 Metagenome 3300040186 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Moab, Southern Rockies & Colorado Plateau, UT, USA - MOAB_047-M-20170523-COMP-DNA1 Battelle Memorial Institute 3300040186 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.24833 -109.38827 11651905 34874 72 1 135 2 0.0 Metagenome 3300033546 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE2 DOE Joint Genome Institute (JGI) 3300033546 Metagenome Analysis spades v. 3.13.0 Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 59.9982 10.7894 58054920 120047 54 58 101 75 SRX7531671 Unrestricted 51.74 Metagenome 3300045437 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-643 Genome Quebec 3300045437 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.437398 -123.522473 1073869330 2330274 485 135 842 252 0.0 Metagenome 3300015344 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_22AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015344 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 307379670 550360 74 88 108 156 SRX3926820 Unrestricted 9.4 Metagenome 3300029713 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37182R1 Beijing Genomics Institute (BGI) 3300029713 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 228168148 300070 195 0 258 1 0.0 Metagenome 3300001002 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN413 DOE Joint Genome Institute (JGI) 3300001002 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Soil 44.20517707 -122.1284473 283340 794 15 0 25 0 SRX3311835 Unrestricted 0.0 Metagenome 3300053159 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 endosphere DOE Joint Genome Institute (JGI) 3300053159 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.12116 -123.270413 537564646 683884 92 119 118 125 Unrestricted 26.46 Metagenome 3300012342 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100477 University of Pennsylvania 3300012342 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 25860542 62847 24 0 36 1 SRX756521 0.0 Metagenome 3300049167 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S32_A_D45 hydrophilic DOE Joint Genome Institute (JGI) 3300049167 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 750101140 1144967 290 51 426 63 Unrestricted 53.86 Metagenome 3300049841 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Virginia, USA - cobbmillcreek_2019_sed_WHONDRS-S19S_0090 DOE Joint Genome Institute (JGI) 3300049841 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 37.291383 -75.930606 1028081868 2420434 1102 36 2155 55 Restricted 0.0 Metagenome 3300015203 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Storglaciaren, Tarfala, Sweden (Sample st-3c, vegetated patch on medial moraine) University of Bristol 3300015203 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.900853 18.44175 6.2 275297528 606681 220 7 380 13 0.0 Metagenome 3300027910 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027910 Metagenome Analysis spades v. 3.11.1 Yes Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment watersheds 41.5935 -78.5142 2440913806 7481535 1801 82 3524 152 SRX2839552 Unrestricted 0.0 Metagenome 3300031947 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H DOE Joint Genome Institute (JGI) 3300031947 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 2884197615 6334392 859 29 1494 44 SRX5820400 Unrestricted 9.75 Metagenome 3300014781 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS62_24 University of Hohenheim 3300014781 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 122576755 190642 72 0 120 1 0.0 Metagenome 3300039233 *Microbiome Permanent Draft Diffuse flow microbial communities from hydrothermal vent near Loihi Seamount, Hawaii, USA Diffuse flow microbial communities from hydrothermal vent near Loihi Seamount, Hawaii, USA - 29 The Marine Biological Laboratory 3300039233 Metagenome Analysis IDBA-UD v. 1.1.3 released by JGI data releasing policy No Yes asmith@simons-rock.edu Amy Smith No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse Flow 18.92 -155.27 5-6 136720305 202806 139 1 233 0 0.0 Metagenome 3300005547 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG DOE Joint Genome Institute (JGI) 3300005547 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 4234461470 12311474 3745 224 6381 417 SRX2744771 Unrestricted 0.0 Metagenome 3300061687 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0603 Microbiome Insights 3300061687 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 218945004 306920 112 3 168 4 0.0 Metagenome 3300043442 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Alabama, United States - blackwarrior_2019_sw_WHONDRS-S19S_0021 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043442 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 32.541 -87.7982 465696957 806693 226 38 352 69 Unrestricted 22.04 Metagenome 3300009417 *Microbiome Permanent Draft Genome and metagenome analysis of marine red algae Porphyra Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male2 metaG DOE Joint Genome Institute (JGI) 3300009417 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes brawley@maine.edu, Brawley@maine.edu Susan Brawley No Host-associated Algae Unclassified Red algae Unclassified Marine 50.677 -3.24 431488959 715148 643 4 936 7 SRX2954899 Unrestricted 0.0 Metagenome 3300060340 *Microbiome Permanent Draft Soil microbial communities from Blodgett Forest Research Station, California, USA Soil microbial communities from Blodgett Forest Research Station, California, USA - BWE201406032C8090 DOE Joint Genome Institute (JGI) 3300060340 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.9122 -120.6612 790884273 1385329 298 25 568 42 Unrestricted 63.67 Metagenome 3300042046 *Microbiome Permanent Draft Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - K_c14.1 Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042046 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1247 -89.1411 812248238 831448 3 8 4 13 SRX5234796 0.0 Metagenome 3300008349 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 159490532 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008349 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 17221720 26492 16 0 18 5 SRX024638, SRX024637 0.0 Metagenome 3300031067 *Microbiome Permanent Draft Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-26 metaG DOE Joint Genome Institute (JGI) 3300031067 Metagenome Analysis spades v. 3.12.0 Yes Yes rbneum@uw.edu Rebecca Neumann No Host-associated Plants Rhizosphere Roots Soil rhizosphere 47.6516 -122.3045 5315572 18131 12 1 25 4 SRX5345978 Unrestricted 769.14 Metagenome 3300046061 *Microbiome Permanent Draft Halite microbial communities from Atacama Desert, Chile Halite microbial communities from Yungay, Atacama Desert, Chile - YG2 Novogene 3300046061 Metagenome Analysis metaWRAP v. 1.3.2 No Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Halite -24.086 -69.904 127486620 152162 18 1 20 1 0.0 Metagenome 3300046753 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_160608.NP1 DOE Joint Genome Institute (JGI) 3300046753 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 580360870 1212744 390 76 595 148 Unrestricted 13.0 Metagenome 3300042966 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-399 Genome Quebec 3300042966 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 53.110315 -111.699187 1518165203 3136807 552 85 835 175 0.0 Metagenome 3300020431 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983) CEA Genoscope 3300020431 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 39.2173 -72.0327 1259112898 2946562 688 121 1124 284 0.0 Metagenome 3300011908 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01330 Weill Cornell Medical College 3300011908 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.83 -73.86 50703373 94537 43 0 60 0 SRX823270 0.0 Metagenome 3300048557 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_200826.NP1 DOE Joint Genome Institute (JGI) 3300048557 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 744585649 1584820 475 87 720 177 Unrestricted 11.54 Metagenome 3300022483 *Microbiome Permanent Draft Human saliva microbial communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva microbial communities from oral cavities of IgA immunodeficiency people from Alicante, Spain - individual 4 Autonomous University of Barcelona 3300022483 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.38 -0.51 19339156 24447 20 0 20 0 0.0 Metagenome 3300013165 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100603 University of Pennsylvania 3300013165 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 30029467 63263 27 0 40 0 SRX756491 0.0 Metagenome 3300002315 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP07-I5 3300002315 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300000853 *Microbiome Permanent Draft Freshwater and marine microbial communities from the Columbia River, USA, of estuaries and plumes across salinity gradients Marine plume microbial communities from the Columbia River - Metatranscriptome 15 PSU University of Maryland 3300000853 Metagenome Analysis released per PI's request No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato Yes 26536246 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Freshwater and marine 46.239 -124.161 7327946 18177 625 279 1532 896 0.0 Metagenome 3300055544 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.19W.13 SIP fraction DOE Joint Genome Institute (JGI) 3300055544 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 194335794 364318 86 55 125 80 Unrestricted 10.69 Metagenome 3300042803 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_10_11 NMDC pilot DOE Joint Genome Institute (JGI) 3300042803 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 11473811 19865 14 0 41 0 SRX2924377 0.0 Metagenome 3300049448 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 soil DOE Joint Genome Institute (JGI) 3300049448 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.12162 -123.269023 5.21 956337293 1598722 334 20 583 32 Unrestricted 13.23 Metagenome 3300059414 *Microbiome Permanent Draft Sorghum rhizosphere and bulk soil microbial communities from University of Arizona Maricopa Agricultural Center, AZ, USA Soil microbial communities from sorghum plot in University of Arizona Maricopa Agricultural Center, AZ, USA - plot4_0-15_20210708 DOE Joint Genome Institute (JGI) 3300059414 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Agricultural land Soil Unclassified Soil 33.07735 -111.974819 407002287 997111 553 19 1071 30 Unrestricted 7.48 Metagenome 3300045518 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Cordillera ecozone, Canada - Lake 14-584 Genome Quebec 3300045518 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 64.650174 -138.392056 879638846 1911278 443 96 686 167 0.0 Metagenome 3300004238 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG06_land_8/20/14_3.00 DOE Joint Genome Institute (JGI) 3300004238 Metagenome Analysis MEGAHIT v. 0.2.0 revert back to private per Christa Yes Yes jbanfield@berkeley.edu, jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield, Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 1015148906 2419900 1772 32 2839 61 SRX3348126 Unrestricted 0.0 Metagenome 3300025631 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR2_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025631 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 36.29 139.38 431811873 735584 387 0 561 1 SRX2338868 Unrestricted 0.0 Metagenome 3300029553 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35657 Beijing Genomics Institute (BGI) 3300029553 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 149493630 193369 129 0 184 0 0.0 Metagenome 3300045565 *Microbiome Draft Lake microbial communities from Canada Lake sediment microbial communities from the Prairies ecozone, Canada - Lake 10-433 Genome Quebec 3300045565 Metagenome Analysis MEGAHIT v1.0.6 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Lake Sediment 52.635863 -108.567479 130593712 182684 87 12 152 13 0.0 Metagenome 3300011228 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00479 Weill Cornell Medical College 3300011228 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.81 -73.9 45832310 67768 42 0 43 0 SRX822448 0.0 Metagenome 3300061669 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0463 Microbiome Insights 3300061669 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 259281507 372711 62 8 106 8 0.0 Metagenome 3300006651 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T8 (1) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006651 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 56267129 108051 63 0 107 0 0.0 Metagenome 3300017777 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N DOE Joint Genome Institute (JGI) 3300017777 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 562395390 1333034 0 0 2 0 SRX7205065 Unrestricted 37.08 Metagenome 3300028776 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_1 DOE Joint Genome Institute (JGI) 3300028776 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 692219783 1361254 385 100 568 158 SRX5357475 Unrestricted 0.0 Metagenome 3300061136 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IF5SW PMA-treated Jet Propulsion Laboratory, California Institute of Technology 3300061136 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 48064001 89552 8 11 14 12 SRX3808532, SRX2249363, SRX3808522, SRX2249362 0.0 Metagenome 3300002368 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 14SEP2009 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002368 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 13732113 39896 69 8 117 21 SRX1988271 Unrestricted 0.0 Metagenome 3300013118 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 314m, 250-2.7um, replicate b Georgia Genomics Facility 3300013118 Metagenome Analysis IDBA 1.1.1 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 706928241 767599 188 2 251 3 0.0 Metagenome 2140918020 *Microbiome Finished Sulfur spring sediment and crust microbial communities from Zodletone, Oklahoma, USA Sulfur spring sediment and crust microbial communities from Zodletone, Oklahoma, USA - D1_filtered Mogene LC 2140918020 Metagenome Analysis released per JGI data release policy No Yes aspain@ou.edu Anne M. Spain, Anne Spain No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Sulfur spring sediment and crust 35.100293 -98.749601 7 5698129 16445 3313 296 4811 0 0.0 Metagenome 3300003819 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH23Jun09 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003819 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 60165265 134643 101 56 165 93 SRX2566712 Unrestricted 0.0 Metagenome 3300070858 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Treehaven, Wisconsin, USA - TREE_046-M-20200706-COMP-DNA1 3300070858 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 34366792 106897 94 7 181 10 0.0 Metagenome 3300028253 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_26JUN2017_LD1 DOE Joint Genome Institute (JGI) 3300028253 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 63346438 121497 5 34 3 63 SRX5345794 Unrestricted 21.37 Metagenome 3300041976 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from the Rocky Mountain Biological Laboratory (RMBL), Gothic, Colorado, United States - 2018WM_4W DOE Joint Genome Institute (JGI) 3300041976 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9595 -106.99 82635998 250353 224 6 428 13 SRX14810766 Unrestricted 7.55 Metagenome 3300041731 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_283 MetaG AgResearch, New Zealand, Mosgeil 3300041731 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1540677942 3080074 299 21 1098 57 0.0 Metagenome 3300008325 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 1, subject 160603188 replicate 1 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008325 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 29856145 35535 11 5 16 11 SRX024537, SRX024538 0.0 Metagenome 3300047393 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Potomac River, Virginia, USA - NASQAN2015_114 DOE Joint Genome Institute (JGI) 3300047393 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9295 -77.1169 139199408 274082 152 35 227 43 Unrestricted 128.28 Metagenome 7000000028 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2 of subject 159207311 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000028 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 94229012 168855 0 0 0 0 0.0 Metagenome 3300013810 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00838 Weill Cornell Medical College 3300013810 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.98 6369518 6256 2 0 7 0 SRX822804 0.0 Metagenome 3300006010 *Microbiome Permanent Draft Rhizosphere and bulk soil microbial communities from Harvard Forest, USA Bulk soil microbial communities from Harvard Forest, USA - 4Bulk_unsorted metaG DOE Joint Genome Institute (JGI) 3300006010 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes deangelis@microbio.umass.edu Kristen M DeAngelis PhD, Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Bulk soil bulk soil 42.3912 -72.1737 22481735 96017 39 5 81 6 SRX2718036 Unrestricted 0.0 Metagenome 3300039743 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_002-O-20170717-COMP-DNA1 Battelle Memorial Institute 3300039743 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 40505267 101523 56 14 113 17 0.0 Metagenome 3300057182 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - LE-23-1 DOE Joint Genome Institute (JGI) 3300057182 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.827 -83.193 48936501 127296 236 10 441 8 Unrestricted 7.52 Metagenome 3300001633 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF007 DOE Joint Genome Institute (JGI) 3300001633 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 10679763 33572 25 9 31 18 SRX2014319 Unrestricted 0.0 Metagenome 3300000390 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from the University of Liverpool 1.5ng_454_Nextera University of Liverpool 3300000390 Metagenome Analysis released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 0 0 0 0 0 0 0.0 Metagenome 3300020352 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556084-ERR599144) CEA Genoscope 3300020352 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 32.1 17.7 353122448 865590 241 45 406 98 0.0 Metagenome 3300065597 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 793 in Claresholm, Alberta, Canada - S00JY_0266 Microbiome Insights 3300065597 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 50.0026073 -113.3303972 191147449 279175 70 1 117 2 0.0 Metagenome 3300029044 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 377_M Beijing Genomics Institute (BGI) 3300029044 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 184635178 255472 170 0 230 0 ERX491114 0.0 Metagenome 3300044717 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_18CD DOE Joint Genome Institute (JGI) 3300044717 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4242 -106.2374 1109734363 1954283 428 38 721 56 SRX20650022 Unrestricted 17.41 Metagenome 2046860001 *Microbiome Permanent Draft Concrete drainage pipe biofilm microbial communities from Ohio, US Concrete drainage pipe biofilm microbial communities from Ohio, US - sample 12382 454 Life Sciences 2046860001 Metagenome Analysis released per JGI data release policy No Yes matlib.robin@epamail.epa.gov Robin Matlib No Environmental Aquatic Storm water Freshwater Drainage pipe biofilm Concrete drainage pipe biofilm 39.8 -84.3 240235330 638094 142 0 249 0 0.0 Metagenome 3300001378 *Microbiome Permanent Draft Goat rumen microbial communities from Langston University, Oklahoma, USA Goat rumen fungal communities from Langston, Oklahoma, USA Cornell University 3300001378 Metagenome Analysis released per JGI data release policy No Yes zsuping@tnstate.edu Suping Zhou No Host-associated Mammals Stomach Digestive system Rumen Goat rumen 35.453976 -97.515884 83468785 230278 405 27 861 41 0.0 Metagenome 3300014623 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01357 Weill Cornell Medical College 3300014623 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.83 -73.84 16172327 22522 5 0 11 0 SRX823297 0.0 Metagenome 3300038533 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - SAG3 Michigan State University 3300038533 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 38.0 -124.0 40893666 116863 1 0 0 0 0.0 Metagenome 3300029964 *Microbiome Permanent Draft Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil - Buba_C1 Reanalysis Center for Advanced Technologies in Genomics, Sao Paulo University 3300029964 Metagenome Analysis metaSPAdes v. 3.12.0 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 40488525 71172 56 1 72 2 0.0 Metagenome 3300010399 *Microbiome Permanent Draft Terrestrial soil microbial communities with and without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3 DOE Joint Genome Institute (JGI) 3300010399 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tiedjej@msu.edu James Tiedje No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 42.3938 -85.3708 5338708425 11914595 3164 187 5526 339 SRX3295621 Unrestricted 0.0 Metagenome 3300039951 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 028_R1_022417 University of Maryland 3300039951 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.193975 24.97747778 18874945 28871 26 3 51 1 0.0 Metagenome 3300070260 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lyndon B. Johnson National Grassland, Texas, USA - CLBJ_002-M-20180410-COMP-DNA1 3300070260 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 9486144 30913 0 0 0 0 0.0 Metagenome 3300026864 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_O3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026864 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 51998141 145989 181 65 356 108 SRX3311918 Unrestricted 0.0 Metagenome 3300036851 *Microbiome Permanent Draft Soil microbial communities from fields in the western Corn Belt region, Nebraska, United States Metatranscriptome of soil microbial communities from fields in the western Corn Belt region, Nebraska, United States - Switchgrass plot 121, no N, depth 2 DOE Joint Genome Institute (JGI) 3300036851 Metagenome Analysis metaspades v. 3.13.0 Yes Yes marty.schmer@ars.usda.gov Marty Schmer No Environmental Terrestrial Agricultural land Soil Unclassified soil 41.1673 -96.4119 1690706611 2698519 578 18 936 21 SRX8380214 Unrestricted 12.98 Metagenome 3300037060 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 S2 20-24 DOE Joint Genome Institute (JGI) 3300037060 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0475 541733987 906333 163 8 289 17 SRX8138787 Unrestricted 15.85 Metagenome 3300027202 *Microbiome Permanent Draft Rhizosphere and bulk soil microbial communities from Harvard Forest, USA Bulk soil microbial communities from Harvard Forest, USA - 5Bulk_NRpos metaG (SPAdes) DOE Joint Genome Institute (JGI) 3300027202 Metagenome Analysis spades v. 3.11.1 Yes Yes deangelis@microbio.umass.edu Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Bulk soil bulk soil 42.5502 -72.1737 2675423 8632 11 1 14 7 Unrestricted 0.0 Metagenome 3300042727 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - J_a8.7 Re-assembly Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042727 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1237 -89.1404 35499300 35521 2 2 5 2 SRX5234790 0.0 Metagenome 3300023107 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L133-311R-2 DOE Joint Genome Institute (JGI) 3300023107 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 691982176 1539211 670 146 1095 218 SRX4797468 Unrestricted 9.47 Metagenome 3300000672 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M1 DOE Joint Genome Institute (JGI) 3300000672 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 4623216 15296 120 16 252 34 SRX2021675, SRX1985857, SRX1985856 Unrestricted 0.0 Metagenome 3300014762 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS51_24 University of Hohenheim 3300014762 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 84230976 146505 60 0 106 0 0.0 Metagenome 3300012613 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100559 University of Pennsylvania 3300012613 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 20588966 43694 32 3 52 5 SRX756195 0.0 Metagenome 3300070451 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_042-M-20200712-COMP-DNA1 3300070451 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 13714572 42483 89 3 190 8 0.0 Metagenome 3300014275 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 219_D1_2014-6-23 San Diego State University 3300014275 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 5258621 16184 14 7 25 9 0.0 Metagenome 3300029660 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 009_6_8_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029660 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 117682041 143476 63 1 86 1 0.0 Metagenome 3300035453 *Microbiome Permanent Draft STAs constructed wetland biome Wetland sediment microbial communities from Everglades, Florida, USA - STA88-Sample08_1 Merge08 University of Florida 3300035453 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy No Yes ng.hanh24@gmail.com Hanh Nguyen No Environmental Aquatic Wetlands Freshwater Sediment sediment 26.38 -80.51 6.6-8.4 76904819 104564 44 0 68 1 0.0 Metagenome 3300000126 *Microbiome Draft Marine microbial communities from chronically polluted sediments in four geographic locations Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBB sample SWE 26_20.5m DOE Joint Genome Institute (JGI) 3300000126 Metagenome Analysis released based on JGI ITS Yes Yes hdionisi@cenpat.edu.ar Hebe Dionisi No Environmental Aquatic Wetlands Marine Sediment Marine 59.350163 18.107847 192914623 543176 377 51 633 70 Unrestricted 0.0 Metagenome 3300050301 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_63 DOE Joint Genome Institute (JGI) 3300050301 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -75.858 159.974 624077747 982458 163 51 216 58 SRX18236989 Restricted 24.97 Metagenome 3300044557 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_USB_015 DOE Joint Genome Institute (JGI) 3300044557 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 281829519 486171 297 2 460 4 SRX12655988 Unrestricted 57.4 Metagenome 3300015177 *Microbiome Permanent Draft Human fecal microbial communities from infant diaper, Dhaka, Bangladesh Human fecal microbial communities from infant diaper, Dhaka, Bangladesh - DMDT001H Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300015177 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes dhtaft@ucdavis.edu Diana Taft No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant feces 23.8103 90.4125 21049568 27452 24 0 22 0 0.0 Metagenome 3300011770 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00616 Weill Cornell Medical College 3300011770 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.8 -73.91 45972827 56944 17 0 35 0 SRX822583 0.0 Metagenome 2084038021 *Microbiome Permanent Draft Marine sediment archaeal communities from Santa Barbara Basin, CA, that are anaerobic and methane-oxidizing Marine sediment archaeal communities from Santa Barbara Basin, CA, that are methane-oxidizing, sample 9-12 cm DOE Joint Genome Institute (JGI) 2084038021 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Sediment Marine sediment 34.21 -119.5 90913355 239177 86 2 146 0 Unrestricted 0.0 Metagenome 3300002474 *Microbiome Permanent Draft Fumarolic subsurface microbial communities from Tramway Ridge at Mt. Erebus, Antarctica for carbon cycling studies in geothermal environments Geothermal fumarole subsurface microbial communities from Mt. Erebus, Antarctica - 1A2D DOE Joint Genome Institute (JGI) 3300002474 Metagenome Analysis revert back to private per Christa Yes Yes twoyke@lbl.gov, craig.herbold@microbial-ecology.net Tanja Woyke, Craig Herbold No Environmental Terrestrial Fumaroles Volcanic Unclassified Fumarolic subsurface -77.5182 167.1113 2544753 4410 2 0 4 0 SRX2555369 Unrestricted 0.0 Metagenome 3300024931 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 49_LOW8 (SPAdes) DOE Joint Genome Institute (JGI) 3300024931 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 63887197 90351 24 0 27 0 SRX2720581 Unrestricted 0.0 Metagenome 3300043577 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 048-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043577 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.92064976 -106.9489694 393744958 994890 413 21 880 24 Unrestricted 8.67 Metagenome 3300001779 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA -CR12Jun_QV11 DOE Joint Genome Institute (JGI) 3300001779 Metagenome Analysis Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 19772287 32958 17 0 25 0 SRX3321592 Unrestricted 0.0 Metagenome 3300005472 *Microbiome Draft Wetland microbial communities from Twitchell Island in the Sacramento Delta Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site L1 Cattail v2 (version 2) DOE Joint Genome Institute (JGI) 3300005472 Metagenome Analysis Unkonwn released based on JGI ITS Yes Yes stringe@lbl.gov Susannah Tringe Yes 25991679 Environmental Aquatic Wetlands Marine Sediment Wetland 38.106796 -121.646457 2364101 2630 2 0 3 0 Unrestricted 0.0 Metagenome 3300026217 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026217 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Permafrost soil 68.6139 -149.3145 323303379 876127 218 20 399 26 SRX2739144 Unrestricted 0.0 Metagenome 3300045611 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_500m_2015 DOE Joint Genome Institute (JGI) 3300045611 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 728305815 1531076 681 3 1245 3 Unrestricted 10.44 Metagenome 3300025538 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025538 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.04565 -121.866287 110191964 234739 162 2 252 3 SRX7142155 Unrestricted 0.0 Metagenome 3300018025 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100 DOE Joint Genome Institute (JGI) 3300018025 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 994196240 1879889 628 24 984 44 SRX3960617 Unrestricted 12.03 Metagenome 3300045476 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-468 Genome Quebec 3300045476 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.643861 -122.401882 848069660 1875366 366 120 587 200 0.0 Metagenome 3300006319 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764062976 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006319 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 149413726 213837 95 0 128 0 0.0 Metagenome 3300011597 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00268 Weill Cornell Medical College 3300011597 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.75 -73.97 26670204 38823 13 0 14 0 SRX822241 0.0 Metagenome 3300056750 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - APS1_5C_T0 DOE Joint Genome Institute (JGI) 3300056750 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 1773141933 2473837 613 85 806 133 Unrestricted 25.88 Metagenome 3300027328 *Microbiome Permanent Draft Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran, Adriatic Sea Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge pinacoderm, lysed by bead beating (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027328 Metagenome Analysis spades v. 3.11.1 Yes Yes ute.hentschel@uni-wuerzburg.de Ute Hentschel No Host-associated Porifera Unclassified Sponge Unclassified Host-associated 45.5099 13.56 296225412 441834 152 8 232 8 SRX3323213 Unrestricted 0.0 Metagenome 3300049679 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought DOE Joint Genome Institute (JGI) 3300049679 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 361016071 826696 571 34 1137 58 Unrestricted 10.8 Metagenome 3300009096 *Microbiome Permanent Draft Rhizosphere and bulk soil microbial communities from Harvard Forest, USA Bulk soil microbial communities from Harvard Forest, USA - 5Bulk_unsorted metaG DOE Joint Genome Institute (JGI) 3300009096 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes deangelis@microbio.umass.edu Kristen M DeAngelis PhD, Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Bulk soil bulk soil 42.5502 -72.1737 939084 2534 9 2 10 0 SRX2718138 Unrestricted 0.0 Metagenome 3300043074 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - MU_050217 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043074 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.8784 -89.3541 6701165 21349 44 7 65 8 SRX8889438 Unrestricted 21.04 Metagenome 3300000933 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 M1 (3) DOE Joint Genome Institute (JGI) 3300000933 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 97571136 159224 93 0 112 0 SRX3311648 Unrestricted 0.0 Metagenome 3300025145 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 325m metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025145 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; sean.crowe@ubc.ca Ramunas Stepanauskas; Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Anoxic lake water -2.0288 29.1756 658870869 1452203 883 9 1453 11 SRX2525295 Unrestricted 0.0 Metagenome 3300048911 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled DOE Joint Genome Institute (JGI) 3300048911 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Rhizoplane Roots Unclassified Rhizoplane soil 42.40581 -85.40228 1998145826 3295324 692 36 1074 70 Unrestricted 13.4 Metagenome 3300040122 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA FertPrarie soil microbial communities from Boone County, Iowa, USA - PF23-WS-July2012 Iowa State University 3300040122 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land FertPrarie soil 42.01375 -93.783837 11666499 40348 78 3 150 1 0.0 Metagenome 3300005713 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2) DOE Joint Genome Institute (JGI) 3300005713 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov, cpan@ou.edu Susannah Tringe, Chongle Pan No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 9.1086 -79.8436 5981366449 19181198 4023 70 7167 94 SRX3886444, SRX3886442, SRX3886443, SRX3886440, SRX3886441 Unrestricted 0.0 Metagenome 3300014897 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00305 Weill Cornell Medical College 3300014897 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.98 19813896 25680 14 0 13 1 SRX822278 0.0 Metagenome 3300006086 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 DOE Joint Genome Institute (JGI) 3300006086 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment watersheds 41.1289 -78.4195 3528750680 11369289 2544 625 4613 1035 SRX2745724 Unrestricted 0.0 Metagenome 3300024247 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 36D_r DOE Joint Genome Institute (JGI) 3300024247 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 217129339 418418 176 42 242 79 SRX4474305 Unrestricted 15.99 Metagenome 2067725000 *Microbiome Permanent Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil v1 DOE Joint Genome Institute (JGI) 2067725000 Metagenome Analysis Velvet released based on JGI ITS No Yes janet.jansson@pnnl.gov Janet Jansson Yes 30158906 Environmental Terrestrial Unclassified Soil Grasslands Soil 43.303611 -89.332778 6.8 149161609 409243 62 0 96 0 Unrestricted 0.0 Metagenome 3300002498 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Hydrocarbon resource environments microbial communities from Canada and USA - Toluene degrading community from Alberta, Canada McGill University 3300002498 Metagenome Analysis 139801 No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 54.0 -114.0 736029846 1125990 189 1 485 3 0.0 Metagenome 2088090006 *Microbiome Permanent Draft Freshwater sediment microbial communities from Lake Washington, Seattle, USA, for methane and nitrogen cycles Sediment microbial communities from Lake Washington, Seattle, for Methane and Nitrogen Cycles, original sample replicate 2 DOE Joint Genome Institute (JGI) 2088090006 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova Yes 23638358 Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.052 -122.267889 412615791 1147398 406 52 687 0 Unrestricted 0.0 Metagenome 3300013886 *Microbiome Permanent Draft Microbial communities from methanogenic microcosms from oil petroleum samples laboratory microbial enrichments from Reconcavo Basin petroleum reservoir, Newcastle Upon Tyne, UK - 15 gl 40C L1 15gl 40C L1 UNIVERSIDADE DE SAO PAULO 3300013886 Metagenome Analysis METASPADES k=79 No Yes inatalia.sierra@gmail.com Isabel Natalia Sierra Garcia No Engineered Lab enrichment Anaerobic media Defined media Unclassified Laboratory microcosms 54.97825278 -1.61778056 49775595 84709 57 2 81 1 0.0 Metagenome 3300002981 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - DAWN at KSC (megahit assembly) DOE Joint Genome Institute (JGI) 3300002981 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes nnivanova@lbl.gov, NNIvanova@lbl.gov Natasha Ivanova, Natalia Ivanova No Engineered Built environment Unclassified Spacecraft Assembly Cleanrooms Unclassified Clean room 28.5853 -80.6508 228826 540 14 0 1 0 Unrestricted 0.0 Metagenome 3300008433 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159753524 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008433 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 22139089 33388 18 0 22 0 0.0 Metagenome 3300040676 *Microbiome Permanent Draft Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada - diffuse fluids EMf2 Dalhousie University 3300040676 Metagenome Analysis Megahit v. 1.2.8 released by JGI data releasing policy No Yes smurdock@uvic.ca Sheryl Murdock No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Marine 47.9501 -129.0961 596613407 1303725 463 123 731 207 0.0 Metagenome 3300052800 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_CO_034D DOE Joint Genome Institute (JGI) 3300052800 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0698 10.43033 255802261 661319 303 14 590 24 Unrestricted 8.63 Metagenome 3300021134 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 02JUL2007 epilimnion DOE Joint Genome Institute (JGI) 3300021134 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 124746360 255216 99 28 154 54 Unrestricted 0.0 Metagenome 3300042195 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_051817_60_f DOE Joint Genome Institute (JGI) 3300042195 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2524342141 4116813 698 1 1148 5 Unrestricted 13.1 Metagenome 3300014969 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG DOE Joint Genome Institute (JGI) 3300014969 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil miscanthus rhizosphere 42.3948 -85.3738 4567748404 10048985 2748 251 4809 448 SRX4808396 Unrestricted 5.71 Metagenome 3300000161 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P12 2000m DOE Joint Genome Institute (JGI) 3300000161 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 48.97 -130.666667 148199099 313773 116 4 260 6 Unrestricted 0.0 Metagenome 3300000847 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from University of Liverpool Illum_standard_Meta-Velvet University of Liverpool 3300000847 Metagenome Analysis Meta-Velvet released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 21534786 26162 60 0 85 0 0.0 Metagenome 3300047634 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA110-TCB DOE Joint Genome Institute (JGI) 3300047634 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6875 -83.5012 315014888 864049 357 34 636 66 Unrestricted 7.15 Metagenome 3300048543 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - Jacob23 DOE Joint Genome Institute (JGI) 3300048543 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Sand Soil Desert sand -78.0122 163.8037 252927427 651517 353 8 673 11 Unrestricted 0.0 Metagenome 3300017971 *Microbiome Permanent Draft Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_2 metaG DOE Joint Genome Institute (JGI) 3300017971 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes valentine@geol.ucsb.edu David Valentine No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Sediment Hypersaline lake sediment 33.3 -115.8 2435798494 4718530 1415 6 2469 15 SRX3905779 Unrestricted 8.61 Metagenome 3300017736 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N DOE Joint Genome Institute (JGI) 3300017736 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 277337349 685990 4 0 6 1 SRX8127183, SRX8127182 Unrestricted 0.0 Metagenome 3300028737 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Lake Matano, South Sulawesi, Indonesia - Watercolumn_Matano_2014_100_MG DOE Joint Genome Institute (JGI) 3300028737 Metagenome Analysis spades v. 3.12.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 454035341 1147138 485 23 869 34 SRX5337904 Unrestricted 33.65 Metagenome 3300023023 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-296 DOE Joint Genome Institute (JGI) 3300023023 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Unclassified Plant litter Unclassified leaf litter 40.2198 -122.9842 68106032 123675 20 27 33 34 SRX4392091 Unrestricted 61.28 Metagenome 3300061177 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Santa Rita Experimental Range, Tucson, Arizona, USA - SRER_043-M-20210809-comp-1 DOE Joint Genome Institute (JGI) 3300061177 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Desert Soil Unclassified Terrestrial soil 31.910099 -110.837175 1699073393 3015886 714 14 1270 23 Unrestricted 17.86 Metagenome 3300051397 *Microbiome Permanent Draft Sediment archaeal communities from Los Azufres geothermal field, Michoacan, Mexico Sediment microbial communities from Los Azufres geothermal field, Michoacan, Mexico - S3 National Autonomous University of Mexico 3300051397 Metagenome Analysis SPAdes v. 3.12.0 No Yes roberto.marin.ibq@gmail.com Roberto Marin No Environmental Aquatic Sediment Thermal springs Unclassified Sediment 19.78158323 -100.65812998 144161343 214880 88 8 103 13 0.0 Metagenome 3300014049 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00643 Weill Cornell Medical College 3300014049 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.79 -73.96 37062534 64193 26 3 38 4 SRX822610 0.0 Metagenome 3300037555 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR09_21 DOE Joint Genome Institute (JGI) 3300037555 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Crustal Fluids crustal fluids 47.7534 -127.7638 1270944955 2915901 895 146 1456 268 SRX9096393 Unrestricted 20.02 Metagenome 3300028458 *Microbiome Permanent Draft Endolithic Cyanobacteria Culture Enrichments Cultured Sandstone endolithic microbial community from Negev Desert, Israel - S-NGV-2 Johns Hopkins Bayview Research CORES 3300028458 Metagenome Analysis metaSPAdes v. 3.10, metawrap v. 0.5 released by JGI data releasing policy No Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified sandstone 30.7141 34.8757 5396797 5278 3 0 3 0 0.0 Metagenome 3300022306 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_24 DOE Joint Genome Institute (JGI) 3300022306 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Sediment Marine Unclassified sediment 37.7 -122.34 817508365 1931673 662 60 1245 89 SRX4054345 Unrestricted 7.73 Metagenome 3300037369 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_C2 DOE Joint Genome Institute (JGI) 3300037369 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 334110389 832428 221 29 392 58 SRX9146688 Unrestricted 6.34 Metagenome 7000000720 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 765094712 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000720 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 138184723 253977 0 0 0 0 0.0 Metagenome 3300027729 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027729 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 51.62 -128.09 548009557 1307525 309 137 588 190 SRX2575212 Unrestricted 0.0 Metagenome 3300029547 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35551 Beijing Genomics Institute (BGI) 3300029547 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 127984887 158518 126 0 153 0 0.0 Metagenome 3300049733 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P26SSC2_191112_i DOE Joint Genome Institute (JGI) 3300049733 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 1294848703 1940757 402 2 639 2 SRX20650433 Unrestricted 0.0 Metagenome 2013954001 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - YNP14 OSP Spring v1 DOE Joint Genome Institute (JGI) 2013954001 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23720654, 23755042 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.733473 -110.70007 3.5 16164785 24189 0 0 0 0 Unrestricted 0.0 Metagenome 3300006272 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2 of subject 158337416 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006272 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 1900938 2278 1 0 1 0 0.0 Metagenome 3300025417 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Oct07 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025417 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 146722455 309435 83 32 136 41 SRX2565292 Unrestricted 0.0 Metagenome 3300027235 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1553A-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027235 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.1867 -123.8835 63719267 143585 172 50 274 85 SRX2753730 Unrestricted 31.06 Metagenome 3300005553 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_02_40cm DOE Joint Genome Institute (JGI) 3300005553 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2199289760 6366283 2012 72 3351 121 SRX2727968 Unrestricted 0.0 Metagenome 3300037387 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 E2 10-14 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037387 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0468 779953443 1821466 593 11 1036 21 SRX4415322, SRX8127944 Unrestricted 0.0 Metagenome 3300031953 *Microbiome Permanent Draft Extreme environments viral communities from various locations Cryopeg brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 CB1W DOE Joint Genome Institute (JGI) 3300031953 Metagenome Analysis spades v. 3.12.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Coastal Marine Unclassified cryopeg brine 71.2943 -156.7153 22202352 43271 1 0 3 0 SRX6379663 Unrestricted 594.71 Metagenome 3300001972 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from the Sargasso Sea - GS000d J. Craig Venter Institute (JCVI) 3300001972 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Oceanic Marine Unclassified Marine 31.175 -64.32433 238012998 443409 225 25 382 36 0.0 Metagenome 3300001394 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 210 deep-092012 DOE Joint Genome Institute (JGI) 3300001394 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 130203500 266127 83 0 140 0 SRX1987659 Unrestricted 0.0 Metagenome 3300026533 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in the Atlantic and Pacific Ocean Hydrothermal vent microbial communities from East Pacific Rise, Pacific Ocean - CV79 DOE Joint Genome Institute (JGI) 3300026533 Metagenome Analysis spades v. 3.11.1 Yes Yes pgirguis@oeb.harvard.edu Peter Girguis No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent 9.8472 -104.2975 612734278 1223151 547 18 800 32 SRX4801559 Unrestricted 21.26 Metagenome 3300031741 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from Ellis Fjord, Antarctic Ocean - #183 DOE Joint Genome Institute (JGI) 3300031741 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5958 78.1913 295045072 513802 227 11 299 18 SRX5649646 Unrestricted 58.25 Metagenome 3300046747 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 soil DOE Joint Genome Institute (JGI) 3300046747 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.120901 -123.269789 5.07 1579581963 2495291 436 15 716 20 Unrestricted 13.03 Metagenome 3300013996 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00839 Weill Cornell Medical College 3300013996 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.98 12349471 22807 7 0 12 0 SRX822805 0.0 Metagenome 3300002891 *Microbiome Permanent Draft Contaminated subsurface sediment microbial communities from Dusseldorf, Germany, analyzing toluene degradation Tol_26 3300002891 Metagenome Analysis released by JGI data releasing policy No Yes emnabouhajja@gmail.com Emna Bouhajja No Environmental Terrestrial Sediment Geologic Unclassified Contaminated subsurface sediment 51.21 6.46 11238 19 0 0 0 0 0.0 Metagenome 3300009631 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_10_100 DOE Joint Genome Institute (JGI) 3300009631 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 307660574 548891 191 7 342 6 SRX3003285 Unrestricted 0.0 Metagenome 3300048112 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_120321.NP2 DOE Joint Genome Institute (JGI) 3300048112 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 635970906 1381856 396 90 636 137 Unrestricted 13.35 Metagenome 3300035491 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Tar microbial communities from Pitch Lake, Trinidad and Tobago - PitchLake_TarA DOE Joint Genome Institute (JGI) 3300035491 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Tar Asphalt lakes Unclassified tar 10.23 -61.62 167554023 269364 120 0 202 2 SRX8343789 Unrestricted 63.23 Metagenome 3300001588 *Microbiome Permanent Draft Marine sediment microbial communities from Cape Matapan matapan sed 3300001588 Metagenome Analysis released by JGI data releasing policy No Yes francescosmedile@hotmail.com, francesco.smedile14@gmail.com francesco smedile, Francesco Smedile No Environmental Aquatic Ocean trench Marine Sediment Marine sediment 36.56667 21.124 0 0 0 0 0 0 0.0 Metagenome 3300002460 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle CSP2_plank highO2_1.2 DOE Joint Genome Institute (JGI) 3300002460 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.534762 -107.782602 908988387 2093683 1458 65 2649 109 SRX1991813 Unrestricted 0.0 Metagenome 3300049275 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA27 DOE Joint Genome Institute (JGI) 3300049275 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 194456009 472440 251 7 466 3 Unrestricted 7.7 Metagenome 3300065648 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 823 in Enchant, Alberta, Canada - S00JY_0196 Microbiome Insights 3300065648 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 50.1313992 -112.190483 1446090 2407 18 0 29 0 0.0 Metagenome 3300038688 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Realigned salt marsh sediment microbial communities from Mersea Island, United Kingdom - W MIRM 1A University of York 3300038688 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Realigned salt marsh sediment 51.79675 0.921833 59890413 158616 102 0 192 2 0.0 Metagenome 3300011764 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway plastic -P00378 Weill Cornell Medical College 3300011764 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Plastic surface city subway plastic 40.76 -73.92 35435110 55668 28 0 29 0 SRX822349 0.0 Metagenome 3300038407 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site1_salt_MII_3 DOE Joint Genome Institute (JGI) 3300038407 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Salt marsh microbial mat 20.7609 58.6478 770725478 1826769 358 10 658 9 SRX9169800 Unrestricted 51.19 Metagenome 3300040201 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 091B_R1 University of Maryland 3300040201 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.69458333 27.09366667 10054007 23527 33 0 55 0 0.0 Metagenome 3300002251 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP08-MA 3300002251 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300049762 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E11_A_4_control DOE Joint Genome Institute (JGI) 3300049762 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 187887079 422804 327 39 604 46 Unrestricted 11.89 Metagenome 3300049340 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CCF1 DOE Joint Genome Institute (JGI) 3300049340 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 138681069 410085 295 4 507 5 Unrestricted 7.02 Metagenome 3300032055 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23 DOE Joint Genome Institute (JGI) 3300032055 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1365388344 3291100 529 7 888 9 SRX5820396 Unrestricted 10.93 Metagenome 3300036893 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 S3 1-5 DOE Joint Genome Institute (JGI) 3300036893 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3531 19.0476 638507005 1267752 281 25 496 40 SRX8138155 Unrestricted 7.32 Metagenome 3300030227 *Microbiome Permanent Draft Marine Fish Microbial Metagenomes Coastal fish gut microbial communities from Southern California Bight, Pacific Ocean - GN2A University of California, San Diego, Scripps Institute of Oceanography 3300030227 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton No Host-associated Fish Intestine Digestive system Unclassified fish gut 33.44520833 -118.4855722 1086332 1961 4 2 4 3 0.0 Metagenome 3300014092 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01383 Weill Cornell Medical College 3300014092 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.63 -74.01 30204452 52312 15 1 26 0 SRX823323 0.0 Metagenome 3300043715 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - I_P72_A200 DOE Joint Genome Institute (JGI) 3300043715 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.1612 -62.8369 577798979 1605609 534 11 1024 23 Unrestricted 7.03 Metagenome 3300071012 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_008-M-20210524-COMP-DNA1 3300071012 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 10662 39 1 0 3 0 0.0 Metagenome 3300023079 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L156-409C-4 DOE Joint Genome Institute (JGI) 3300023079 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 516708213 1157537 477 115 914 162 SRX4799439 Unrestricted 9.21 Metagenome 3300004888 *Microbiome Permanent Draft Ecklonia radiata associated microbial communities from Long Bay, Malabar Australia Ecklonia radiata associated microbial communities from Long Bay, Malabar Australia Y1 University of New South Wales 3300004888 Metagenome Analysis idba-ud released per JGI data release policy Yes Yes z.qiu@student.unsw.edu.au Zhiguang Qiu No Host-associated Algae Unclassified Unclassified Unclassified Ecklonia radiata associated 79897668 124867 41 13 55 12 0.0 Metagenome 3300037790 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - ARW1_20151027 DOE Joint Genome Institute (JGI) 3300037790 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 286524684 436666 153 13 225 3 SRX9140352 Unrestricted 34.48 Metagenome 3300012487 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.old.130510 DOE Joint Genome Institute (JGI) 3300012487 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 94264405 254420 222 28 470 46 SRX3527360 Unrestricted 0.0 Metagenome 3300012608 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100264 University of Pennsylvania 3300012608 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 18625495 43040 18 0 28 0 SRX756637 0.0 Metagenome 3300005184 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0919_09_20cm DOE Joint Genome Institute (JGI) 3300005184 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2786112854 8154822 3274 126 5846 223 SRX2518975 Unrestricted 0.0 Metagenome 3300027773 *Microbiome Permanent Draft Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027773 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade Yes 30397342 Environmental Terrestrial Unclassified Soil Unclassified Surface soil 40.7999 -76.3402 922194601 1607210 514 15 802 19 SRX2837996 Unrestricted 0.0 Metagenome 3300070493 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_006-M-20190729-COMP-DNA1 Battelle Memorial Institute 3300070493 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Grasslands Soil Pasture Terrestrial soil 38.897609 -78.152007 5.85-6.48 11671964 36874 59 5 110 12 0.0 Metagenome 3300024059 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2 DOE Joint Genome Institute (JGI) 3300024059 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Strait Marine Unclassified seawater 49.2166667 -123.5333333 1056075475 2643572 795 76 1396 132 SRX4097022 Unrestricted 8.13 Metagenome 3300026870 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgLMC (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026870 Metagenome Analysis spades v. 3.11.1 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 41906213 140873 128 8 219 11 SRX2521242 Unrestricted 0.0 Metagenome 3300002182 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - OP-RAMG-01 DOE Joint Genome Institute (JGI) 3300002182 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes rmkelly@ncsu.edu, rmkelly@ncsu.edu; twoyke@lbl.gov Robert Kelly, Robert Kelly; Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.611006 -110.440182 849468172 1633191 989 37 1577 57 SRX2554840, SRX2554839 Unrestricted 0.0 Metagenome 3300070274 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Alaska, USA - DEJU_006-O-20180618-COMP-DNA1 3300070274 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 163418728 442126 171 54 321 91 0.0 Metagenome 3300001056 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN581 DOE Joint Genome Institute (JGI) 3300001056 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.070856 -96.582821 409720 1427 8 0 16 0 SRX1986914 Unrestricted 0.0 Metagenome 3300043768 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Para, Brazil - F5-2A DOE Joint Genome Institute (JGI) 3300043768 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -3.2959 -54.963 571007098 1403074 277 17 542 23 Unrestricted 9.47 Metagenome 3300037074 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C6-3C DOE Joint Genome Institute (JGI) 3300037074 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 282386727 843071 479 9 792 15 SRX8804135 Unrestricted 5.27 Metagenome 3300060448 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210611_15_21 DOE Joint Genome Institute (JGI) 3300060448 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 527297158 801191 253 141 340 211 Unrestricted 31.73 Metagenome 3300029970 *Microbiome Permanent Draft Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil - Edson_C3 Reanalysis Center for Advanced Technologies in Genomics, Sao Paulo University 3300029970 Metagenome Analysis metaSPAdes v. 3.12.0 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 43779674 79300 97 2 103 1 0.0 Metagenome 3300014257 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleC_D1 DOE Joint Genome Institute (JGI) 3300014257 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.052509 -121.76873 265044364 658686 468 13 839 27 SRX7182404 Unrestricted 0.0 Metagenome 3300030036 *Microbiome Permanent Draft Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong - Treated_water_201202 University of Hong Kong 3300030036 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Drinking water Freshwater Unclassified Drinking water treatment plant 60762280 114077 37 12 59 23 SRX390515 0.0 Metagenome 3300000042 *Microbiome Draft Arabidopsis rhizosphere microbial communities from the University of North Carolina Arabidopsis rhizosphere soil microbial communities from the University of North Carolina, USA - sample from Arabidopsis soil young DOE Joint Genome Institute (JGI) 3300000042 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes sgtringe@lbl.gov, sgtringe@lbl.gov; dangl@email.unc.edu Susannah Tringe, Susannah Tringe; Jeff Dangl Yes 22859206 Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 39.0042816 -77.1012173 21850780 58832 159 1 327 2 Unrestricted 0.0 Metagenome 3300034194 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_06D_17 DOE Joint Genome Institute (JGI) 3300034194 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9144 -147.8354 618386102 1689254 866 5 1516 16 SRX7633858 Unrestricted 5.8 Metagenome 3300009354 *Microbiome Permanent Draft Microbial communities in swimming pool backwashes Microbial communities from sand-filter backwash in Singapore swimming pools - PR-2 Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300009354 Metagenome Analysis megahit released per JGI data release policy Yes Yes martintayqx@gmail.com Martin Tay No Engineered Built environment Unclassified Unclassified Unclassified Swimming pool sandfilter backwash 1.28967 103.85007 929270051 1576897 492 296 756 464 0.0 Metagenome 3300020288 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000161 (ERX556132-ERR599045) CEA Genoscope 3300020288 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 0.0033 71.6428 138178145 360489 196 4 321 9 0.0 Metagenome 3300013277 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100274 University of Pennsylvania 3300013277 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 35183745 71326 17 0 25 0 SRX756627 0.0 Metagenome 3300055091 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_4-s115 day 308 DOE Joint Genome Institute (JGI) 3300055091 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1540909306 2277486 509 145 631 152 Unrestricted 32.08 Metagenome 3300069637 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_003-M-20140116-COMP-DNA1 re-annotation Argonne National Laboratory 3300069637 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 24512768 75187 69 5 181 8 ERX2133937 0.0 Metagenome 3300043387 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 228-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043387 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9615 -107.0305 513203795 1443706 492 22 963 55 Unrestricted 6.58 Metagenome 3300059585 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_SEK2_5_to_SEK2 DOE Joint Genome Institute (JGI) 3300059585 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.245 1029010839 1740598 486 226 726 319 Unrestricted 0.0 Metagenome 7000000630 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit number 3 of subject 763536994 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000630 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 67939361 98717 0 0 0 0 0.0 Metagenome 3300043555 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield ecozone, Canada - Lake 06-307 Genome Quebec 3300043555 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.687897 -93.688896 544398923 1084313 225 46 332 73 0.0 Metagenome 3300008004 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-19 DOE Joint Genome Institute (JGI) 3300008004 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 746834785 1347058 840 16 1341 24 SRX3198634 Unrestricted 0.0 Metagenome 3300027639 *Microbiome Permanent Draft Agricultural soil microbial communities from Utah and Georgia to study Nitrogen management Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027639 Metagenome Analysis spades v. 3.11.1 Yes Yes jeanette.norton@usu.edu Jeanette Norton No Environmental Terrestrial Agricultural land Soil Unclassified Agricultural soil 41.7655 -111.8143 394658670 893880 494 20 902 42 SRX2922492 Unrestricted 0.0 Metagenome 3300027166 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF033 (SPAdes) DOE Joint Genome Institute (JGI) 3300027166 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 34433020 100706 27 4 50 9 SRX2014321 Unrestricted 0.0 Metagenome 3300025927 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025927 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 3413766764 7989486 1248 76 2324 133 SRX3203330 Unrestricted 0.0 Metagenome 3300028291 *Microbiome Permanent Draft Gypsum Hill Spring sediment microbiome from environmental samples in Axel Heiberg Island, Canada Gypsum Hill Spring filament microbial communities from Axel Heiberg Island, Canada - GHF McGill University 3300028291 Metagenome Analysis canu v. 1.7 released by JGI data releasing policy No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Subzero spring 79.408333 -90.71805556 2367544 4070 0 0 0 0 0.0 Metagenome 3300001171 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 DOE Joint Genome Institute (JGI) 3300001171 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 9372384 29976 88 14 166 14 SRX3311915 Unrestricted 0.0 Metagenome 3300043369 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 292-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043369 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.978 -107.0392 437911133 1202881 413 59 807 85 Unrestricted 6.19 Metagenome 3300032109 *Microbiome Permanent Draft Microbial communities from the deep biosphere Serpentinite fluid microbial communities from Manleluag Spring National Park, Philippines - Sample_121018_ML1_sterivex_filter re-assembly The Marine Biological Laboratory 3300032109 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Alkaline Non-marine Saline and Alkaline Unclassified Freshwater 15.67 120.24 50155433 127392 61 4 149 5 SRX2058446 0.0 Metagenome 3300044575 *Microbiome Permanent Draft Marine microbial communities from various hydrothermal vent chimneys in Pacific Ocean Marine hydrothermal vent microbial communities from Snap Snap chimney, Urashima Vent Field, Pacific Ocean - 797SSC Western Washington University 3300044575 Metagenome Analysis MegaHIT v. 1.2.9 released by Laura A Murray No Yes lmurray0918@gmail.com Laura Murray No Environmental Aquatic Hydrothermal vents Marine Black smokers Marine hydrothermal vent 13.0 144.0 267460965 543682 283 8 432 12 0.0 Metagenome 3300047351 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TSTR11 DOE Joint Genome Institute (JGI) 3300047351 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dnoguera@wisc.edu Daniel Noguera Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.073847 -89.414083 32949800 38451 36 5 44 4 SRX12729463 Unrestricted 359.7 Metagenome 3300015155 *Microbiome Permanent Draft Human fecal microbial communities from infant diaper, Dhaka, Bangladesh Human fecal microbial communities from infant diaper, Dhaka, Bangladesh - DMDT001B Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300015155 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes dhtaft@ucdavis.edu Diana Taft No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant feces 23.8103 90.4125 29441801 42724 33 0 30 0 0.0 Metagenome 3300017626 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - S11-01 University of Michigan 3300017626 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.35212 -85.38545 10917502 17910 5 0 11 0 0.0 Metagenome 3300008462 *Microbiome Permanent Draft Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - July 8, 2014 virsorter University of Michigan 3300008462 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes duhaimem@umich.edu Melissa Duhaime No Environmental Aquatic Lake Freshwater Unclassified freshwater lake 41.7032 -83.2575 8.33 92375540 143112 0 0 0 0 0.0 Metagenome 3300028627 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Met DOE Joint Genome Institute (JGI) 3300028627 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 274648289 454667 221 0 339 2 SRX5281854 Unrestricted 28.6 Metagenome 3300036983 *Microbiome Permanent Draft Sediment microbial communities from various lakes in Switzerland Sediment microbial communities from Lake Zug, Canton of Zug, Switzerland - LZug_0.25 DOE Joint Genome Institute (JGI) 3300036983 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mark.lever@usys.ethz.ch Mark Alexander Lever No Environmental Aquatic Lake Freshwater Sediment sediment 47.1639 8.4969 671581576 1127729 255 12 381 17 SRX8398951 Unrestricted 15.94 Metagenome 3300025207 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025207 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.9082 -79.0499 41040384 58857 36 0 45 0 SRX1991086 Unrestricted 0.0 Metagenome 3300039039 *Microbiome Permanent Draft Nursing home wastewater effluent microbial communities near Freiburg, Germany Downstream nursing home wastewater effluent microbial communities near Freiburg, Germany - C1756 University of Freiburg 3300039039 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Hospital wastewater Industrial wastewater Unclassified Downstream nursing home wastewater 48.0 8.0 112659979 210696 171 2 305 1 SRX516606 0.0 Metagenome 3300042110 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lake Yojoa, Honduras - Yojoa_01_2020_E_epi (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300042110 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Lake Freshwater Unclassified Freshwater 14.8744 -87.9835 906607280 1805000 446 129 735 214 Unrestricted 12.12 Metagenome 3300019717 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BRT_8-9_MG DOE Joint Genome Institute (JGI) 3300019717 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 107768819 272234 253 20 490 31 SRX3982710 Unrestricted 3.48 Metagenome 3300048828 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_120404.NP1 DOE Joint Genome Institute (JGI) 3300048828 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 600113786 1202097 434 108 620 186 Unrestricted 15.21 Metagenome 3300013746 *Microbiome Permanent Draft Oral microbial communities from fossilized dental plaque from Dalheim, Germany Oral microbial communities from fossilized dental plaque from Dalheim, Germany - S7-Shot-G12-calc University of Oklahoma 3300013746 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skeletonized remains Remains Dental calculus Fossilized dental plaque 51.565093 8.849015 62702673 163715 114 0 204 0 SRX340016 0.0 Metagenome 3300005591 *Microbiome Permanent Draft Soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, under manipulated climate change conditions. Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 DOE Joint Genome Institute (JGI) 3300005591 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jmtalbot@bu.edu, jmtalbot@bu.edu; ptempler@bu.edu Jennifer Talbot, Jennifer Bhatnagar; Pamela Templer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 2629695112 7577367 1357 82 2203 187 SRX2838776 Unrestricted 0.0 Metagenome 3300043644 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 266-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043644 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9809 -107.0401 306382968 921814 460 19 820 41 Unrestricted 7.15 Metagenome 3300049049 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - D12_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049049 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 524603309 1226339 551 14 1109 22 Unrestricted 0.0 Metagenome 7000000506 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 158256496 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000506 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 9894940 19641 0 0 0 0 0.0 Metagenome 3300014733 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01386 Weill Cornell Medical College 3300014733 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.63 -74.0 27219546 41811 19 0 26 0 SRX823326 0.0 Metagenome 3300032560 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18009 DOE Joint Genome Institute (JGI) 3300032560 Metagenome Analysis spades v. 3.13.0 Yes Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.0411 -89.6861 617740807 1152952 376 45 522 77 SRX7891179 Unrestricted 17.67 Metagenome 3300031607 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #646 DOE Joint Genome Institute (JGI) 3300031607 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 770900706 1386800 381 54 514 79 SRX5649499 Unrestricted 34.93 Metagenome 3300009085 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015 DOE Joint Genome Institute (JGI) 3300009085 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wilkins.231@osu.edu, mike.wilkins@colostate.edu Michael Wilkins No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0956 -99.1001 1277825114 2634056 950 25 1733 44 SRX2753785 Unrestricted 0.0 Metagenome 3300033158 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1 DOE Joint Genome Institute (JGI) 3300033158 Metagenome Analysis spades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified soil 26.5065 -80.2537 4006278165 8008113 1425 49 2413 76 SRX5666827 Unrestricted 8.83 Metagenome 3300031991 *Microbiome Finished Cave microbial communities from biofilms and mineral spring water, Bavaria, Germany Wall biofilm microbial communities from Sulzbrunn cave, Bavaria, Germany - subaerial Snottites The Keck Facility at the Josephine Bay Paul Center 3300031991 Metagenome Analysis metaspades v. 3.11 released by JGI data releasing policy Yes Yes clemuenchen@gmail.com clemens karwautz No Environmental Terrestrial Wall Cave Biofilm cave wall biofilm 47.67 10.39 507321668 1007066 218 12 352 18 0.0 Metagenome 3300005309 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila neotestacea male 1 gut Cornell University 3300005309 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy No Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila neotestacea male adult gut 43.025606 -77.572811 80470193 205284 63 17 118 18 0.0 Metagenome 3300050542 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf microbial communities from Olympic Peninsula, Washington, USA - D0_RHK1_5 DOE Joint Genome Institute (JGI) 3300050542 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Alder tree leaf 48.154 -124.211 371830197 443491 91 45 153 71 Unrestricted 50.81 Metagenome 3300001723 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP-144 DOE Joint Genome Institute (JGI) 3300001723 Metagenome Analysis Yes Yes mbsulli@gmail.com, sacinas@icm.csic.es; mbsulli@gmail.com Matthew Sullivan, Silvia G. Acinas; Matthew Sullivan Yes 27654921 Environmental Aquatic Oceanic Marine Unclassified Deep ocean 29.1475 -23.6838 106309061 202910 93 1 149 0 SRX4924340 Unrestricted 0.0 Metagenome 3300020483 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 05AUG2008 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020483 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.099444 -89.404444 37262621 82595 60 14 101 10 SRX3307837 Unrestricted 0.0 Metagenome 3300008507 *Microbiome Permanent Draft Wastewater microbial communities from the domestic sewers Wastewater microbial communities from the domestic sewers in Singapore - Site 2 Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300008507 Metagenome Analysis CLC genomics workbench 8 released per JGI data release policy No Yes erinscm@nus.edu.sg Charmaine Ng No Engineered Wastewater Unclassified Sewage Unclassified wastewater 1.3 103.8 123134772 326339 71 15 138 28 0.0 Metagenome 3300000315 *Microbiome Draft Forest soil microbial communities from the Amazon forest, Brazil, of fosmid clones Fosmid Clones Derived from Amazon Forest Soil Microbial Communities DOE Joint Genome Institute (JGI) 3300000315 Metagenome Analysis released per Simon -- IMGSUPP2953 Yes Yes jmgladden@lbl.gov, JMGladden@lbl.gov John Gladden No Environmental Terrestrial Tropical forest Soil Bulk soil Forest soil -2.5871 -49.041 3693361 4135 0 0 0 0 0.0 Metagenome 3300034178 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17 DOE Joint Genome Institute (JGI) 3300034178 Metagenome Analysis metaspades v. 3.13.0 Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Aquatic Sediment Floodplain Unclassified sediment 38.9229 -106.9499 753630889 1754794 442 12 788 22 SRX7630817 Unrestricted 7.81 Metagenome 3300002853 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA PDIso9.ppmwps2 McGill University 3300002853 Metagenome Analysis SPAdes3.1.0 released per JGI data release policy No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey No Environmental Terrestrial Unclassified Soil Unclassified Hydrocarbon resource environments 51.17 -116.16 4 83902857 237985 44 1 80 2 0.0 Metagenome 3300040803 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Salins du Lion, Vitrolles, France - D97a Genopole Toulouse Midi-Pyrenees 3300040803 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.45 5.2264 251188876 487694 296 25 551 38 0.0 Metagenome 3300015300 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_09MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015300 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 153408635 276187 13 21 12 34 SRX3922229 Unrestricted 11.07 Metagenome 7000000445 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 706846339 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000445 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 24962763 50350 0 0 0 0 0.0 Metagenome 3300007800 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human hard palate microbial communities from NIH, USA - visit 2, subject 765560005 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007800 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Hard palate Human 39.0042816 -77.1012173 95694775 150417 78 0 138 0 0.0 Metagenome 3300033393 *Microbiome Permanent Draft Metagenomic SGS 2x251 Riparian soil bacterial communities from Cottonwood Creek Park, Encinitas, CA, USA - R15 Illumina 3300033393 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Riparian soil Soil 33.051604 -117.289363 266359968 977719 231 13 471 35 0.0 Metagenome 3300049987 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 014-ER18-SC-SDNA (version 2) DOE Joint Genome Institute (JGI) 3300049987 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9217 -106.9526 793281837 2104800 794 45 1540 58 Unrestricted 0.0 Metagenome 3300025683 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC073_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025683 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 37.8 -122.27 491473661 875017 400 6 609 12 SRX2157904 Unrestricted 0.0 Metagenome 3300006095 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_500_biof - 1398105538000 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300006095 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 546140106 1020160 344 174 477 169 SRX2770511, SRX2770512 Unrestricted 0.0 Metagenome 3300011648 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100684 University of Pennsylvania 3300011648 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17411709 45223 25 0 32 0 SRX756410 0.0 Metagenome 3300024350 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8d DOE Joint Genome Institute (JGI) 3300024350 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 177667240 385258 171 7 267 20 SRX4547349 Unrestricted 12.73 Metagenome 3300040966 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18B_4_11_9 mgh University of Alberta 3300040966 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 53913456 69771 27 3 28 5 0.0 Metagenome 3300039152 *Microbiome Permanent Draft Organic and conventional farm associated microbial communities from Canada and USA Wastewater microbial communities from Conventional dairy farm in Colorado, USA - WW30 Colorado State University 3300039152 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 40.7 -105.0 109281562 209968 160 1 267 3 0.0 Metagenome 3300023245 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #423 DOE Joint Genome Institute (JGI) 3300023245 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 141659134 287839 71 0 120 0 SRX4396803 Unrestricted 26.97 Metagenome 3300022431 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1OPP2 JM53 AGRF 3300022431 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 54031455 96658 36 0 77 0 0.0 Metagenome 3300009173 *Microbiome Permanent Draft Marine microbial communities from western Arctic Ocean Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 DOE Joint Genome Institute (JGI) 3300009173 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh Yes 30271971 Environmental Aquatic Oceanic Marine Unclassified Marine 75.2588 -156.0227 2187599091 4200075 1397 190 2183 338 SRX2997166 Unrestricted 0.0 Metagenome 3300028983 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 274_12M Beijing Genomics Institute (BGI) 3300028983 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 40478492 47328 41 0 59 0 ERX491055 0.0 Metagenome 3300011356 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01021 Weill Cornell Medical College 3300011356 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.67 -73.83 13653647 18065 10 0 17 0 SRX822983 0.0 Metagenome 3300003954 *Microbiome Permanent Draft Hot spring microbial communities from Copahue Geothermal field, Neuquen, Argentina Thermophiles HPI Heinrich-Pette-Institut 3300003954 Metagenome Analysis SPAdes released per JGI data release policy No Yes wolfgang.streit@uni-hamburg.de Wolfgang Streit No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring -37.783873 -71.121062 4379057 6285 12 2 18 1 0.0 Metagenome 3300042186 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A4 University of California, Davis 3300042186 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 226422748 625616 309 5 567 12 0.0 Metagenome 3300041052 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand- T3D6 IDBA-UD 100x Baseclear 3300041052 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 80013698 124521 110 14 211 8 0.0 Metagenome 3300027121 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h DOE Joint Genome Institute (JGI) 3300027121 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 83163646 183899 100 12 180 22 SRX5245177 Unrestricted 15.65 Metagenome 3300055500 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.1C.10 SIP fraction DOE Joint Genome Institute (JGI) 3300055500 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 106545676 185543 106 0 193 2 Unrestricted 13.45 Metagenome 3300013659 *Microbiome Permanent Draft Insectivorous bat viral communities from France Insectivorous bat viral communities from France - b6 Institut Pasteur, Paris, France 3300013659 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Multiple organs Multiple systems Pooled tissues Bat tissue 11232160 19451 11 4 38 12 SRX590191 0.0 Metagenome 3300037577 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C7-1C DOE Joint Genome Institute (JGI) 3300037577 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 755963254 2190143 887 38 1625 51 SRX9166496 Unrestricted 5.96 Metagenome 3300017661 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - G13-09 University of Michigan 3300017661 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.39651 -85.40936 9375491 12483 8 0 10 0 0.0 Metagenome 3300026688 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN589 (SPAdes) DOE Joint Genome Institute (JGI) 3300026688 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.070856 -96.582821 9830828 33412 34 4 80 4 SRX1986973 Unrestricted 0.0 Metagenome 3300000769 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 29MAY2009 epilimnion DOE Joint Genome Institute (JGI) 3300000769 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300003650 *Microbiome Permanent Draft Subglacial freshwater microbial communities from Lake Whillans, Antarctica Subglacial freshwater microbial communities from Lake Whillans, Antarctica - 3.0 micron filter 3300003650 Metagenome Analysis released by JGI data releasing policy No Yes xner@lsu.edu Brent Christner No Environmental Aquatic Subglacial lake Deep subsurface Unclassified Subglacial freshwater -84.24 -153.694 19186035 30683 11 0 22 0 0.0 Metagenome 3300035382 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_1_5_3 mgh University of Alberta 3300035382 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified wastewater 56.7292 -111.3885 52828230 68675 28 1 49 2 0.0 Metagenome 3300005708 *Microbiome Permanent Draft Freshwater microbial communities from Lake Kinneret, Israel Aquatic microbial communities from Lake Kinneret, Israel - sample 6 Macrogen 3300005708 Metagenome Analysis Unkonwn No Yes beja@tx.technion.ac.il Beja O No Environmental Aquatic Lentic Freshwater Unclassified Freshwater 32.7872 35.6176 38585 34 0 0 0 0 0.0 Metagenome 3300014679 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00380 Weill Cornell Medical College 3300014679 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.77 -73.91 30996941 55904 21 1 34 0 SRX822351 0.0 Metagenome 3300037098 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 S2 10-14 DOE Joint Genome Institute (JGI) 3300037098 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0475 489397157 841234 156 8 243 22 SRX8138789 Unrestricted 13.16 Metagenome 3300009766 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico white nodule DOE Joint Genome Institute (JGI) 3300009766 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Host-associated Plants Nodule Roots Unclassified Root nodule 19.09098 -98.87936 585350143 818250 870 3524 1478 6644 SRX3006946 Unrestricted 0.0 Metagenome 3300039330 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 622_4M Beijing Genomics Institute (BGI) 3300039330 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 26454976 35444 39 0 48 0 ERX491272 0.0 Metagenome 3300028893 *Microbiome Permanent Draft Microbial communities from Yellowstone National Park hot springs 2017 Hot spring sediment microbial communities from Boulder Geyser Outflow 2, Yellowstone National Park, USA - 170629B University of Minnesota 3300028893 Metagenome Analysis SPAdes v. 3.11.0 released by JGI data releasing policy Yes Yes trinityh@umn.edu Trinity Hamilton No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.5589 -110.8436 8.675 196918189 436827 117 1 130 1 0.0 Metagenome 3300070298 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_001-M-20190930-COMP-DNA1 3300070298 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 10432477 32892 28 2 53 5 0.0 Metagenome 7000000117 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 765013792 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000117 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 461848 1171 0 0 0 0 SRX024102 0.0 Metagenome 3300000787 *Microbiome Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil v7 (version 7) DOE Joint Genome Institute (JGI) 3300000787 Metagenome Analysis Artifact filter, partition at k=32, assemble with Velvet at k19-45, Minimus2 released based on JGI ITS Yes Yes janet.jansson@pnnl.gov Janet Jansson Yes 30158906 Environmental Terrestrial Unclassified Soil Grasslands Soil 39.0042816 -77.1012173 907268494 2560548 5 2 50 15 Unrestricted 0.0 Metagenome 3300001662 *Microbiome Permanent Draft Marine microbial communities from the Santa Barbara Basin, California, USA sbbS 3300001662 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes dsjones@umn.edu, daniel.s.jones@nmt.edu Daniel Jones No Environmental Aquatic Unclassified Marine Unclassified Marine 34.2500169 -122.2912323 3376410 10936 45 12 360 97 0.0 Metagenome 3300021427 *Microbiome Permanent Draft Wetland sediment microbial communities from Dorn Creek Dane County, Wisconsin, USA, enriched under anaerobic Fe-reducing conditions Wetland sediment microbial communities from Wisconsin, USA, enriched under anaerobic conditions - Initial Inoculum University of Wisconsin, Madison 3300021427 Metagenome Analysis SPAdes 3.10.0 released by JGI data releasing policy Yes Yes jmejia@wisc.edu Jacqueline Mejia No Environmental Aquatic Wetlands Freshwater Sediment Wetland Sediment 43.144933 -89.471218 2317221239 5603581 803 24 1407 62 0.0 Metagenome 3300027412 *Microbiome Permanent Draft Deep subsurface and oceanic microbial communities from Witwatersrand Basin, South Africa, and the Canadian and Fennoscandian shields and at the Lost City Hydrothermal Field Deep subsurface microbial communities from North Pacific Ocean - 450_OLKR46/470m Metagenome (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027412 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Terrestrial Unclassified Deep subsurface Unclassified Deep subsurface 47.88611 -127.75 144576246 242822 104 4 162 4 Unrestricted 0.0 Metagenome 3300038562 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - ILB1 Michigan State University 3300038562 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 33.75307 -118.2206 27867104 76573 0 0 1 0 0.0 Metagenome 3300042637 *Microbiome Draft Permafrost soil microbial communities from Adventdalen on Svalbard, Norway Permafrost soil microbial communities from Adventdalen on Svalbard, Norway - Sample4 Baseclear 3300042637 Metagenome Analysis Velvet v. 3.3 released by JGI data releasing policy No Yes thiele_biology@gmx.de Stefan Thiele No Environmental Terrestrial Unclassified Soil Permafrost Permafrost soil 78.18301 15.91776 1.35 93790048 231556 30 0 77 0 0.0 Metagenome 3300049897 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC5 DOE Joint Genome Institute (JGI) 3300049897 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 192951374 488767 398 9 824 11 Restricted 17.03 Metagenome 3300043060 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8WB15 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043060 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 11854000 34643 59 7 95 14 SRX8379796 Unrestricted 31.4 Metagenome 3300029698 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37194 Beijing Genomics Institute (BGI) 3300029698 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 197377191 230835 137 0 241 0 0.0 Metagenome 3300008116 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA University of Michigan 3300008116 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7635 -83.3309 8.835 409228001 725057 235 111 315 188 0.0 Metagenome 3300013985 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00833 Weill Cornell Medical College 3300013985 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.72 -73.99 14864993 16963 9 0 12 0 SRX822799 0.0 Metagenome 3300022838 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1006 DOE Joint Genome Institute (JGI) 3300022838 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 158062637 301869 147 0 234 0 SRX4397246 Unrestricted 11.79 Metagenome 3300047546 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Georgia, United States - altamaha_2019_sw_WHONDRS-S19S_0010 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047546 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 31.6679 -81.8403 303672479 521964 160 33 246 49 Unrestricted 0.0 Metagenome 3300039262 *Microbiome Permanent Draft Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada - diffuse fluids MVf12 Dalhousie University 3300039262 Metagenome Analysis Megahit v. 1.2.8 released by JGI data releasing policy No Yes smurdock@uvic.ca Sheryl Murdock No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Marine 48.4303 -128.6821 370203585 646488 263 28 425 46 0.0 Metagenome 3300044466 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_251 DOE Joint Genome Institute (JGI) 3300044466 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 493736539 1201084 370 15 705 19 Unrestricted 6.88 Metagenome 3300029000 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 345_4M Beijing Genomics Institute (BGI) 3300029000 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 68349314 77669 40 0 48 0 ERX491100 0.0 Metagenome 3300013027 *Microbiome Permanent Draft Gypsum rock endolithic and hypoendolithic microbial communities Gypsum rock hypoendolithic microbial communities from the Atacama Desert, Chile - Monturaqui Johns Hopkins Bayview Research CORES 3300013027 Metagenome Analysis metaSPAdes released by JGI data releasing policy Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock -23.57431 -68.10215 605895631 1719387 272 5 444 13 0.0 Metagenome 3300000293 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM308 Beijing Genomics Institute (BGI), Macrogen 3300000293 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 84119616 111628 295 0 399 0 0.0 Metagenome 3300026194 *Microbiome Permanent Draft Anaerobic biogas reactor microbial communites from Washington, USA Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_A C13 SIP DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026194 Metagenome Analysis spades v. 3.11.1 Yes Yes dacb@uw.edu David Beck Yes 28895946 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic biogas reactor 47.6525 -122.3049 346253432 594919 321 2 436 2 SRX2339077 Unrestricted 0.0 Metagenome 3300002126 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 DOE Joint Genome Institute (JGI) 3300002126 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 109288292 315607 399 3 680 14 SRX1989935, SRX1989936, SRX1989937, SRX1989938 Unrestricted 0.0 Metagenome 3300039775 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Moab, Southern Rockies & Colorado Plateau, UT, USA - MOAB_001-M-20170521-COMP-DNA1 Battelle Memorial Institute 3300039775 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.24833 -109.38827 37278379 105880 133 3 246 8 0.0 Metagenome 3300052301 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - E8W8 DOE Joint Genome Institute (JGI) 3300052301 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 200785480 389235 217 54 419 88 Unrestricted 22.88 Metagenome 3300037600 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR11_13 DOE Joint Genome Institute (JGI) 3300037600 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Crustal Fluids crustal fluids 47.7583 -127.7622 58507780 135562 87 6 158 15 SRX9096399 Unrestricted 440.2 Metagenome 3300012798 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched millipede-associated microbial communities from UW Madison campus, WI, USA - HID1971M_E6 MG DOE Joint Genome Institute (JGI) 3300012798 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 56126636 62441 44 0 75 0 SRX3564632 Unrestricted 0.0 Metagenome 3300029184 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 133_4M Beijing Genomics Institute (BGI) 3300029184 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 68174511 79282 39 0 51 0 ERX490949 0.0 Metagenome 3300008974 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T10 (3) BES Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2) Shell Corporation 3300008974 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 94681490 338813 111 0 221 2 0.0 Metagenome 3300050477 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - E16W8 DOE Joint Genome Institute (JGI) 3300050477 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 155462817 301903 206 64 398 98 Unrestricted 17.36 Metagenome 3300028350 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #51 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028350 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 34870377 65127 18 3 28 1 SRX2526860 Unrestricted 0.0 Metagenome 3300067164 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210614_18_13 DOE Joint Genome Institute (JGI) 3300067164 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 464896352 714488 227 160 377 214 Unrestricted 0.0 Metagenome 3300047405 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Congo River, Brazzaville, Congo - CONGO_051 DOE Joint Genome Institute (JGI) 3300047405 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater -4.3092 15.2356 13102473 42418 54 6 112 15 Unrestricted 54.15 Metagenome 3300027885 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from the University of Notre Dame, USA, of lakes that contribute to methane emissions Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027885 Metagenome Analysis spades v. 3.11.1 Yes Yes sjones20@nd.edu Stuart Jones No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 41.7 -86.23 2104205794 4113604 1250 139 2152 229 SRX2576534 Unrestricted 0.0 Metagenome 3300056824 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - APS4_16W_TP2_16O DOE Joint Genome Institute (JGI) 3300056824 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 2241218827 2999686 506 143 623 214 Unrestricted 25.21 Metagenome 3300057042 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E2L_40_42 DOE Joint Genome Institute (JGI) 3300057042 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9934494 -81.4907807 1005475696 1620885 391 3 681 6 Unrestricted 12.9 Metagenome 3300047290 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Apalachicola River, Florida, USA - NASQAN2015_227 DOE Joint Genome Institute (JGI) 3300047290 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 29.9493 -85.0154 439352304 947348 430 68 769 110 Unrestricted 15.0 Metagenome 3300001807 *Microbiome Permanent Draft Bioremediated contaminated groundwater microbial communities from North Railroad Avenue plume (NRAP), New Mexico Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-00 DOE Joint Genome Institute (JGI) 3300001807 Metagenome Analysis Yes Yes reiss@nmt.edu, NNIvanova@lbl.gov; rebecca.reiss@nmt.edu Rebecca Reiss, Natalia Ivanova; Rebecca Reiss Yes 27980706 Environmental Aquatic Groundwater Deep subsurface Contaminated Bioremediated contaminated groundwater 35.992 -106.0797 13042521 16192 4 0 13 0 SRX2554384 Unrestricted 0.0 Metagenome 3300005674 *Microbiome Permanent Draft Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia Enhanced biological phosphorus removal bioreactor viral communities from the University of Queensland, Australia - SBR4-V90709 Phage Sequencing University of Queensland 3300005674 Metagenome Analysis CLC 6.0 Released per Connor Skennerton (Sep 15, 2015) No Yes c.skennerton@gmail.com Connor Skennerton No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor lab-scale EBPR bioreactor -27.49999 153.012098 11468718 24071 5 1 10 2 0.0 Metagenome 3300040727 *Microbiome Permanent Draft Deep subsurface microbial community underneath the Deccan traps, India Deep subsurface rock microbial communities from Deccan Traps, India - C4 CeGaT 3300040727 Metagenome Analysis MEGAHIT v. 1.2.9 released by JGI data releasing policy No Yes sprajendra94@gmail.com rajendra prasad No Environmental Terrestrial Rock Deep subsurface Unclassified deep subsurface rock 17.299167 73.738611 6471475 10208 9 1 12 6 0.0 Metagenome 3300024983 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_inoc_biof (SPAdes) DOE Joint Genome Institute (JGI) 3300024983 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioremediation Unclassified Thiocyanate Unclassified Wastewater bioreactor -33.936637 18.478905 225773098 303349 156 6 192 3 SRX2576691 Unrestricted 0.0 Metagenome 3300043499 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 023-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043499 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.957 -106.9868 765937375 1825094 616 29 1070 61 Unrestricted 7.76 Metagenome 3300012501 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610 DOE Joint Genome Institute (JGI) 3300012501 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Environmental Terrestrial Unclassified Soil Unclassified unplanted soil 35.9076 -79.0506 132863323 352020 235 13 516 31 SRX3527483 Unrestricted 0.0 Metagenome 3300041783 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - C_37_wk_2 DOE Joint Genome Institute (JGI) 3300041783 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9949 -107.07 187541261 488003 209 11 384 27 SRX14808259 Unrestricted 7.9 Metagenome 3300006334 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m University of Hawaii 3300006334 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes ktennessen@lbl.gov Kristin Tennessen No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 562590024 1285083 529 40 763 68 0.0 Metagenome 3300021593 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0126-100-LTR Downsampled Assembly University of Michigan 3300021593 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7026 -83.2538 7.983 326895963 577913 44 52 66 38 0.0 Metagenome 2166559009 *Microbiome Permanent Draft Microbial communities from the Atlantic Ocean and human feces from France, grouped together for a comparative study Human fecal microbial communities from France, for comparison studies - Human3 (F2-w 0943) 454 Life Sciences 2166559009 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Host-associated Mammals: Human Large intestine Digestive system Fecal Environmental and host-associated 45.460129 4.495284 9266757 18599 12 0 39 0 0.0 Metagenome 3300064760 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 590 in Spirit river, Alberta, Canada - S00JY_0708 Microbiome Insights 3300064760 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 56.14294627 -117.3944095 130006048 185715 72 4 111 4 0.0 Metagenome 3300007108 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 160421117 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007108 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 70538577 79663 53 0 81 0 0.0 Metagenome 3300005970 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus leukodermatus Group 2 BELIZE.2 DOE Joint Genome Institute (JGI) 3300005970 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 739102008 1863390 14 5 14 11 SRX2712312 Unrestricted 0.0 Metagenome 3300031862 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40 DOE Joint Genome Institute (JGI) 3300031862 Metagenome Analysis spades v. 3.12.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5094 -110.5094 1321812730 2281906 803 9 1276 14 SRX6380689 Unrestricted 39.72 Metagenome 3300025354 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Section #1 (SPAdes) DOE Joint Genome Institute (JGI) 3300025354 Metagenome Analysis spades v. 3.11.1 Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.973481 -119.476345 73447272 129920 105 19 145 25 SRX3311903 Unrestricted 0.0 Metagenome 3300025721 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL1-D (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025721 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.299 -156.61 452846138 1016204 403 17 666 35 SRX2916185 Unrestricted 0.0 Metagenome 3300035361 *Microbiome Permanent Draft Cathode biofilm microbial communities from solar microbial fuel cell (MFC) in Washington, DC, USA Cathode biofilm microbial communities from solar microbial fuel cell (MFC) in Washington, DC, USA - Sample 8 Naval Research Laboratory 3300035361 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Industrial production Unclassified Engineered product Unclassified Cathode biofilm 38.823126 -77.017947 65179311 88181 27 0 27 0 0.0 Metagenome 3300049025 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - A21_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049025 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 655419302 1467820 444 11 902 11 Unrestricted 0.0 Metagenome 3300002390 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 02APR2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002390 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 25565697 63175 54 53 91 95 SRX1989752 Unrestricted 0.0 Metagenome 3300022352 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1OPP1 JM37 AGRF 3300022352 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 44004216 71777 29 0 36 0 0.0 Metagenome 3300017682 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_07NOV2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017682 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 185831597 363358 198 136 304 225 SRX3927725 Unrestricted 6.93 Metagenome 3300014304 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqA_D1 DOE Joint Genome Institute (JGI) 3300014304 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.209766 -122.033424 274022087 700949 362 3 777 6 SRX7182424 Unrestricted 0.0 Metagenome 3300070363 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dead Lake, Alabama, USA - DELA_002-M-20190624-COMP-DNA1 3300070363 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 37182128 106380 97 3 183 5 0.0 Metagenome 3300001681 *Microbiome Permanent Draft Black smokers hydrothermal plume microbial communities from Abe, Lau Basin, Pacific Ocean Black smokers hydrothermal plume microbial communities from Abe, Lau Basin, Pacific Ocean - IDBA 3300001681 Metagenome Analysis IDBA-UD Public release per request from Karthik Anantharaman (April 15, 2014) No Yes akarthik@umich.edu Karthik Anantharaman No Environmental Aquatic Hydrothermal vents Marine Black smokers Black smokers hydrothermal plume -20.111307 -176.989014 429147887 672341 42 10 58 15 0.0 Metagenome 3300013236 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100723 University of Pennsylvania 3300013236 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 15924340 28663 25 2 35 11 SRX756127 0.0 Metagenome 3300069411 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_003-M-20170619-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069411 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 159954929 450865 178 13 280 20 0.0 Metagenome 3300037224 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 E-1-D DOE Joint Genome Institute (JGI) 3300037224 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0467 743519483 1392927 345 0 615 1 SRX8160343 Unrestricted 11.95 Metagenome 3300024893 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 22_HOW5 (SPAdes) DOE Joint Genome Institute (JGI) 3300024893 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 75282919 136168 46 2 58 6 SRX2720159 Unrestricted 0.0 Metagenome 3300014243 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 174_L1_2014-4-30 San Diego State University 3300014243 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 2144229 7203 15 12 46 40 0.0 Metagenome 3300028132 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 61D DOE Joint Genome Institute (JGI) 3300028132 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 333927967 709646 248 29 400 71 SRX5172022 Unrestricted 15.54 Metagenome 3300009927 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R3 University of New South Wales 3300009927 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 72817145 129424 38 3 54 4 0.0 Metagenome 3300023229 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #551 DOE Joint Genome Institute (JGI) 3300023229 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 112903843 221281 56 0 77 0 SRX4397126 Unrestricted 27.84 Metagenome 3300030077 *Microbiome Permanent Draft Human fecal microbial communities from healthy and liver cirrhosis patients in Hangzhou, China Human fecal microbial communities from healthy subjects in Hangzhou, China - HV15_Run3 Zhejiang University 3300030077 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 30.0 120.0 9164594 14496 9 0 7 0 0.0 Metagenome 3300021119 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 23JUN2009 epilimnion DOE Joint Genome Institute (JGI) 3300021119 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 63314174 134384 82 41 124 73 Unrestricted 0.0 Metagenome 3300038581 *Microbiome Permanent Draft Bacterial communities from sewage treatment works near Birtley, UK Bioelectrochemical system biofilm bacterial communities from sewage treatment works near Birtley, UK - 27B 4M Northumbria University 3300038581 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes martin.spurr@newcastle.ac.uk Martin Spurr No Engineered Bioreactor Unclassified Anaerobic Unclassified wastewater 54.903212 -1.595078 34892878 72268 108 0 182 0 0.0 Metagenome 3300027420 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A1-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300027420 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 20888711 70230 73 2 135 2 SRX1991105 Unrestricted 0.0 Metagenome 7000000429 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 604812005 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000429 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 123201502 203295 0 0 0 0 0.0 Metagenome 3300027995 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_1_MG DOE Joint Genome Institute (JGI) 3300027995 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.7 121.4042 1042063237 2961352 770 5 1398 8 SRX5244058 Unrestricted 9.13 Metagenome 3300013103 *Microbiome Permanent Draft Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay9, Core 4571-4, 0-3 cm DOE Joint Genome Institute (JGI) 3300013103 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nd.microbiota@gmail.com Nina Dombrowski Yes 30479325 Environmental Aquatic Hydrothermal vents Marine Sediment marine sediment 27.0183 -111.3802 2826948006 5892385 2621 33 4355 39 SRX3568921 Unrestricted 9.91 Metagenome 3300042865 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Nov2002-ww0341 DOE Joint Genome Institute (JGI) 3300042865 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1083502255 1581649 352 63 462 75 Unrestricted 22.92 Metagenome 3300000891 *Microbiome Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil DOE Joint Genome Institute (JGI) 3300000891 Metagenome Analysis Velvet released based on JGI ITS Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Grasslands Soil 43.303333 -89.334167 6.7 1463277025 4632915 4013 118 7868 195 Unrestricted 0.0 Metagenome 3300042818 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119 NMDC pilot DOE Joint Genome Institute (JGI) 3300042818 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92039953 -106.94828697 1160876800 2958340 525 16 1015 33 SRX5354621 0.0 Metagenome 3300048120 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_111116.NP2 DOE Joint Genome Institute (JGI) 3300048120 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 687256424 1624599 560 46 898 75 Unrestricted 12.16 Metagenome 3300049781 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S40_C_D89 hydrophobic DOE Joint Genome Institute (JGI) 3300049781 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 318783405 476785 87 19 187 12 Unrestricted 25.15 Metagenome 3300064948 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 687 in Warspite, Alberta, Canada - S00JY_0764 Microbiome Insights 3300064948 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 54.0558482 -112.3659904 342037666 486636 90 1 158 0 0.0 Metagenome 3300070527 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Arizona, USA - SRER_004-M-20190806-COMP-DNA1 Battelle Memorial Institute 3300070527 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.906778 -110.815262 6.56-8.54 16788699 50112 37 8 80 9 0.0 Metagenome 3300011913 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00367 Weill Cornell Medical College 3300011913 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.64 -74.07 52687497 96981 32 0 35 1 SRX822338 0.0 Metagenome 3300025085 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025085 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.51 -76.2 205695526 487301 24 0 34 0 SRX2927703 Unrestricted 0.0 Metagenome 3300034407 *Microbiome Finished Marine viral communities of the coast of Yellow Sea, Qingdao, China Marine viral communities of the coast of Yellow Sea, Qingdao, China - zq Ocean University of China 3300034407 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes 1054738805@qq.com Chengxiang Gu No Environmental Aquatic Coastal Marine Unclassified marine 36.062 120.315 329258188 604292 86 4 131 6 0.0 Metagenome 3300029309 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440 CEA Genoscope 3300029309 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -13.0023 -95.9759 144149196 280940 27 0 42 0 0.0 Metagenome 3300034688 *Microbiome Permanent Draft Understanding the reciprocal impacts of modified plant cell wall and associated microbiome Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-PdIQD-R1 DOE Joint Genome Institute (JGI) 3300034688 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kalluriudayc@ornl.gov Udaya C. Kalluri No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 32.1348 -81.9657 509121461 542101 57 278 72 135 SRX7584240 Unrestricted 0.0 Metagenome 3300025173 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025173 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; paul.van.der.wielen@kwrwater.nl; brian.hedlund@unlv.edu Ramunas Stepanauskas; Paul van der Wielen; Brian Hedlund No Environmental Aquatic Drinking water Freshwater Unchlorinated Wastewater 52.2278 5.919 8 693596283 1521213 819 18 1318 34 SRX2753925 Unrestricted 0.0 Metagenome 3300007784 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_D1_MG DOE Joint Genome Institute (JGI) 3300007784 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Soil 37.4971 -122.129 362191115 774486 398 18 719 33 SRX10967101 Unrestricted 0.0 Metagenome 3300020306 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000212 (ERX556014-ERR599098) CEA Genoscope 3300020306 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -17.2387 53.9775 146553802 383935 135 2 190 8 0.0 Metagenome 3300008888 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T5 (3) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO Shell Corporation 3300008888 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl .ac.uk, ianhead@ncl .ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 68715363 246502 72 0 163 1 0.0 Metagenome 3300053751 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FL_02 DOE Joint Genome Institute (JGI) 3300053751 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.407926 -82.180036 90043355 140823 4 9 3 6 Restricted 411.66 Metagenome 3300006146 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t14_691M_inflammed - microbial_metagenome University of Texas Southwestern Medical Center 3300006146 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 156215087 291974 128 3 177 0 0.0 Metagenome 3300013311 *Microbiome Permanent Draft Solar panel surface microbial communities from Valencia, Spain Solar panel surface microbial communities from Valencia, Spain - panel 1 Lifesequencing S.L. 3300013311 Metagenome Analysis Abyss released by JGI data releasing policy No Yes manuel.porcar@uv.es Manuel Porcar No Engineered Built environment Unclassified Solar panel Unclassified Solar panel surfaces 39.4561165 -0.3545661 70861408 145294 41 17 77 45 0.0 Metagenome 3300071020 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_044-M-20210525-COMP-DNA1 3300071020 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 84638 296 5 0 11 0 0.0 Metagenome 3300002161 *Microbiome Permanent Draft Freshwater and sediment microbial communities from a dead zone in Lake Erie, USA Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA DOE Joint Genome Institute (JGI) 3300002161 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes rmmckay@bgsu.edu Robert McKay, Robert M. McKay No Environmental Aquatic Lentic Freshwater Sediment Freshwater and sediment 41.474889 -82.854137 309519846 783379 414 146 707 234 SRX1991078 Unrestricted 0.0 Metagenome 3300002847 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Shell albian Sands tailings microbial communities from Canada and USA - PDIso4.JFRhodoferax McGill University 3300002847 Metagenome Analysis SPAdes3.1.0 released per JGI data release policy No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey No Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 4113436 5736 3 0 6 0 0.0 Metagenome 3300009683 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG DOE Joint Genome Institute (JGI) 3300009683 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes loy@microbial-ecology.net; Michael.Pester@dsmz.de Alexander Loy; Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.1318 11.881 917571601 1710376 290 1 441 4 Unrestricted 0.0 Metagenome 3300031797 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23 DOE Joint Genome Institute (JGI) 3300031797 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1234894760 2954365 400 2 656 8 SRX5820221 Unrestricted 12.25 Metagenome 3300035190 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Nov2015-rr0059 DOE Joint Genome Institute (JGI) 3300035190 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 989215651 1986268 507 171 715 263 SRX7710007 Unrestricted 12.3 Metagenome 3300028059 *Microbiome Permanent Draft Soil microbial communities from hillslopes of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-1-W_D DOE Joint Genome Institute (JGI) 3300028059 Metagenome Analysis spades v. 3.11.1 Yes Yes laurameredith@email.arizona.edu Laura Meredith No Engineered Artificial ecosystem Soil Mesocosm Unclassified soil 32.5789 -110.8512 9576239 27286 12 0 23 0 SRX5246414 Unrestricted 283.6 Metagenome 3300046791 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 soil DOE Joint Genome Institute (JGI) 3300046791 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.120814 -123.269165 5.86 1013953637 1638524 314 14 527 16 Unrestricted 11.78 Metagenome 3300017568 *Microbiome Permanent Draft Fecal microbial communities from free-living howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from free-living howler monkeys from Sao Paulo Zoo, Brazil - Ind. 1-3, S1 Center for Advanced Technologies in Genomics, Sao Paulo University 3300017568 Metagenome Analysis SPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 48262223 88906 80 1 94 1 0.0 Metagenome 3300011541 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00521 Weill Cornell Medical College 3300011541 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.97 17539073 20178 14 0 19 0 SRX822490 0.0 Metagenome 3300002099 *Microbiome Permanent Draft Soil microbial communities from Kansas (Konza Prairie Natural Area and Manhattan, Kansas, USA) Soil microbial communities from Manhattan, Kansas, USA - Sample 400um MDA DOE Joint Genome Institute (JGI) 3300002099 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 revert back to private per Christa Yes Yes sgtringe@lbl.gov, sgtringe@lbl.gov; ELBrodie@lbl.gov Susannah Tringe, Susannah Tringe; Eoin Brodie No Environmental Terrestrial Unclassified Soil Unclassified Soil 39.214 -96.5852 141066729 302747 78 7 171 15 Unrestricted 0.0 Metagenome 3300042676 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A41 University of California, Davis 3300042676 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 313499593 822793 447 9 721 11 0.0 Metagenome 3300066279 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONZ_003-M-20160714-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066279 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.10077 -96.56309 63723867 198972 124 3 245 4 0.0 Metagenome 3300029708 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37210 Beijing Genomics Institute (BGI) 3300029708 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 213753280 268300 164 0 235 0 0.0 Metagenome 3300027256 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1560A-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027256 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2638 -123.4649 155681341 312054 150 66 216 105 Unrestricted 17.02 Metagenome 3300004180 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 10_HOW4 DOE Joint Genome Institute (JGI) 3300004180 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 204994919 548340 151 11 245 17 SRX2720119 Unrestricted 0.0 Metagenome 3300011479 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00375 Weill Cornell Medical College 3300011479 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.92 15909453 26397 16 0 21 0 SRX822346 0.0 Metagenome 3300026178 *Microbiome Permanent Draft Anaerobic reactors microbiome study Activated sludge microbial communities from lab. scaled anaerobic digester in Belvaux, Luxembourg - ACS0-37 University of Luxembourg 3300026178 Metagenome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 49.506216 5.943617 297529671 344691 78 7 253 8 0.0 Metagenome 3300012090 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Florida, USA - TSFL040 MetaG DOE Joint Genome Institute (JGI) 3300012090 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 28.7105 -81.4844 487263542 845459 406 19 653 32 SRX3539479 Unrestricted 0.0 Metagenome 3300000498 *Microbiome Permanent Draft Deep mine microbial communities from Beatrix mine, South Africa, that are thermophilic Deep mine microbial communities from Beatrix mine, South Africa, that are thermophilic, sample1 Inqaba Biotechnologies 3300000498 Metagenome Analysis released per JGI data release policy No Yes litthad@ufs.ac.za Derek Litthauer No Environmental Terrestrial Unclassified Soil Mine Deep mine -28.3 26.75 0 0 0 0 0 0 0.0 Metagenome 3300015265 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG DOE Joint Genome Institute (JGI) 3300015265 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.1613 -96.6752 559543434 1269441 657 65 1089 115 SRX3579708 Unrestricted 12.67 Metagenome 3300000981 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP1201 DOE Joint Genome Institute (JGI) 3300000981 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -30.33 103.31 10584864 32039 34 11 69 23 SRX1982585 Unrestricted 0.0 Metagenome 3300014189 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Indonesia to Iowa, USA - IO4 Iowa State University 3300014189 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 14940438 30507 0 2 0 1 SRX1150291 0.0 Metagenome 3300017755 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 34 SPOT_SRF_2012-07-09 DOE Joint Genome Institute (JGI) 3300017755 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 400256818 944059 66 54 119 105 SRX7207415 Unrestricted 34.54 Metagenome 3300046508 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvCe-F(1) 20-24 DOE Joint Genome Institute (JGI) 3300046508 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3547 19.0433 630415039 961112 264 2 367 7 Restricted 14.06 Metagenome 3300005698 *Microbiome Permanent Draft Marine microbial communities from six Antarctic regions Marine microbial communities from six Antarctic regions - DNA Fragments Technion-Israel Institute of Technology 3300005698 Metagenome Analysis Unkonwn No Yes alison@dri.edu Alison Murray No Environmental Aquatic Unclassified Marine Unclassified Marine -64.766667 -64.05 43087 39 1 0 1 0 0.0 Metagenome 3300042122 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 DOE Joint Genome Institute (JGI) 3300042122 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.9457 -103.6985 288157873 736535 309 13 609 24 Unrestricted 8.82 Metagenome 3300024291 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 74D DOE Joint Genome Institute (JGI) 3300024291 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 263389401 663581 220 37 352 47 SRX4473129 Unrestricted 19.58 Metagenome 3300014167 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin10_10_metaG DOE Joint Genome Institute (JGI) 3300014167 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1404112669 2808359 686 63 1209 114 SRX3293030 Unrestricted 6.17 Metagenome 3300014841 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01394 Weill Cornell Medical College 3300014841 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.61 -73.98 8672124 10530 5 0 10 2 SRX823334 0.0 Metagenome 3300004004 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWB_D2 DOE Joint Genome Institute (JGI) 3300004004 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.015041 -122.501831 1009470002 2600401 908 8 1643 14 SRX7142757 Unrestricted 0.0 Metagenome 3300025766 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-three (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025766 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.299 -156.61 42210641 121633 57 7 129 9 SRX2901418 Unrestricted 0.0 Metagenome 3300035326 *Microbiome Permanent Draft Mouse fecal microbial communities from various locations Fecal microbial communities from mouse strain Swiss web in Sweden - S Fe20 Beijing Genomics Institute (BGI) 3300035326 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 57.69745 11.98583 175706060 243359 181 0 256 0 0.0 Metagenome 3300044828 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_15CS DOE Joint Genome Institute (JGI) 3300044828 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4337 -106.2481 1264656436 2107361 334 44 510 55 SRX20649968 Unrestricted 13.96 Metagenome 2044078006 *Microbiome Permanent Draft Dendroctonus frontalis microbial communities from southwest Mississippi, USA Dendroctonus frontalis bacterial communities from Mississippi, USA DOE Joint Genome Institute (JGI) 2044078006 Metagenome Analysis Newbler No Yes gsuen@wisc.edu Garret Suen Yes 25406380 Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Dendroctonus frontalis 31.5 -90.9 41255331 82571 19 0 32 0 0.0 Metagenome 3300033463 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300033463 Metagenome Analysis spades v. 3.13.0 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -19.6574 146.8351 4987554452 10515467 6450 83 10288 131 SRX7093511, SRX7093512 Unrestricted 0.0 Metagenome 3300007542 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG DOE Joint Genome Institute (JGI) 3300007542 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 38.8455 -76.4191 512250538 1181994 0 0 0 0 SRX3301745, SRX2753457, SRX3301744 Unrestricted 0.0 Metagenome 3300008481 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160400887 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008481 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 162580286 228613 133 0 170 0 0.0 Metagenome 3300004462 *Microbiome Permanent Draft Human oral biofilm microbial communities from Columbus, Ohio, USA, following smoke exposure Human oral biofilm microbial communities from Columbus, Ohio, USA, following smoke exposure Molecular Research LP (MR DNA) 3300004462 Metagenome Analysis Unknown released per JGI data release policy No Yes sukirth.ganesan@gmail.com Sukirth Ganesan No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral biofilm 39.9 -82.9 415212941 2197064 440 8 3015 17 0.0 Metagenome 3300048575 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Wood chips microbial communities from bioreactor in Golden, Colorado, USA - AB_TrOCs_4 DOE Joint Genome Institute (JGI) 3300048575 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Unclassified Wood chips 39.7555 -105.2211 940156552 1113715 328 8 397 8 Unrestricted 47.84 Metagenome 3300037536 *Microbiome Permanent Draft Soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA Soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA - S2.2016.400 DOE Joint Genome Institute (JGI) 3300037536 Metagenome Analysis metaspades v. 3.13.0 Yes Yes adina@iastate.edu Adina Howe No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.0127 -93.7445 1809986171 3086939 547 7 936 4 SRX9161665 Unrestricted 14.78 Metagenome 3300045411 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_200m_2015 DOE Joint Genome Institute (JGI) 3300045411 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 1052242016 1857203 795 6 1444 9 Unrestricted 12.35 Metagenome 3300045676 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-465 Genome Quebec 3300045676 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.114032 -122.981403 1010823525 2226641 453 356 791 741 0.0 Metagenome 3300005099 *Microbiome Permanent Draft Hydrothermal sediment in Guaymas Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 10, 8-11cmbsf Beijing Genomics Institute (BGI) 3300005099 Metagenome Analysis IDBA-UD v. 1.1.1 released per JGI data release policy No Yes asdfeng131@sjtu.edu.cn, asdfeng188@gmail.com Feng Xiaoyuan No Environmental Aquatic Unclassified Marine Unclassified marine 234918618 276075 165 0 166 0 0.0 Metagenome 3300012218 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100109 University of Pennsylvania 3300012218 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 7153837 19216 15 1 22 2 SRX756721 0.0 Metagenome 3300049479 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Austin, Texas, USA - lowercolorado_2019_sed_WHONDRS-S19S_0063 DOE Joint Genome Institute (JGI) 3300049479 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 30.250335 -97.709399 364276365 876585 571 24 985 47 Unrestricted 11.24 Metagenome 3300064801 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 595 in Falher, Alberta, Canada - S00JY_0704 Microbiome Insights 3300064801 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 55.45243753 -117.122471 134110501 198183 41 1 86 3 0.0 Metagenome 3300000713 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 18 DOE Joint Genome Institute (JGI) 3300000713 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 13018733 34648 81 7 118 15 SRX4339351 Unrestricted 0.0 Metagenome 3300059729 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059729 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 677115885 1515544 694 115 1205 191 SRX2753522 Unrestricted 0.0 Metagenome 7000000183 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159551223 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000183 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 21628728 36950 0 0 0 0 0.0 Metagenome 3300015090 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G5A, Northern proglacial tributary margin, adjacent to top of river) University of Bristol 3300015090 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.15642 -50.083651 6.1 123396624 312602 124 5 208 7 0.0 Metagenome 3300001325 *Microbiome Permanent Draft Marine microbial communities from the Red Sea Marine microbial communities from the Red Sea - Atlantis II brine metagenomic assembly 3300001325 Metagenome Analysis De Novo released by JGI data releasing policy No Yes bioosama@aucegypt.edu Osama Ali No Environmental Aquatic Unclassified Marine Unclassified Marine 21.351508 38.078207 47151885 97391 13 0 15 0 0.0 Metagenome 3300012265 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF #695 DOE Joint Genome Institute (JGI) 3300012265 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5602 78.1968 102592878 200651 51 1 108 4 SRX3296351 Unrestricted 0.0 Metagenome 3300046813 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 soil DOE Joint Genome Institute (JGI) 3300046813 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121423 -123.271523 5.07 638253948 1091316 239 20 440 18 Unrestricted 14.45 Metagenome 3300042124 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_082716_2423 DOE Joint Genome Institute (JGI) 3300042124 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.9457 -103.6985 121939281 344833 232 6 452 17 Unrestricted 6.64 Metagenome 3300005933 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKE DOE Joint Genome Institute (JGI) 3300005933 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli, Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline Lake -68.4725 78.188 613006575 1363889 384 76 601 98 SRX2746863 Unrestricted 0.0 Metagenome 3300020145 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sediment microbial communities from Great Boiling Springs, Gerlach, Nevada, United States - GBS 85_MetaG DOE Joint Genome Institute (JGI) 3300020145 Metagenome Analysis spades v. 3.10.1 Yes Yes rstepanauskas@bigelow.org; brian.hedlund@unlv.edu Ramunas Stepanauskas; Brian Hedlund Yes 31333598 Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 40.6614 -119.3661 80294486 145754 53 0 61 1 SRX3998731 Unrestricted 203.83 Metagenome 3300004002 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWA_D2 DOE Joint Genome Institute (JGI) 3300004002 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 37.926434 -122.509186 944399426 2450884 775 3 1518 16 SRX7142929 Unrestricted 0.0 Metagenome 3300026741 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO21-C (SPAdes) DOE Joint Genome Institute (JGI) 3300026741 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 21146901 69465 72 4 109 5 SRX2575533 Unrestricted 0.0 Metagenome 7000000075 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 764508039 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000075 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 71094101 99129 0 0 0 0 0.0 Metagenome 3300002698 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Biofilm from sections of failed pipe - PAS_821 McGill University 3300002698 Metagenome Analysis released per JGI data release policy No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey No Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 55.07 -110.53 0 0 0 0 0 0 0.0 Metagenome 3300009838 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC028_MetaG DOE Joint Genome Institute (JGI) 3300009838 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.3 -88.15 872051895 1721392 683 7 1154 9 SRX2165244 Unrestricted 0.0 Metagenome 3300006305 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m University of Hawaii 3300006305 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 261125646 431432 287 24 388 38 0.0 Metagenome 3300032326 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains Ecozone, Canada - Lake 08-210 Genome Quebec 3300032326 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.575988 -81.659668 649733478 1275588 333 60 588 111 0.0 Metagenome 3300007544 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3 DOE Joint Genome Institute (JGI) 3300007544 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2327 -123.9168 310640461 649217 341 39 567 69 SRX2753611 Unrestricted 0.0 Metagenome 3300020538 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 28JUN2011 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020538 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 127120224 247840 106 30 141 37 SRX1989646 Unrestricted 0.0 Metagenome 3300022766 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S1 Version 2 University of New South Wales 3300022766 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes z5119396@unsw.edu.au; h.luter@aims.gov.au Hung Nguyen; Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 46320393 80952 20 4 26 8 0.0 Metagenome 3300040611 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Jornada LTER, Desert Southwest, NM, USA - JORN_006-M-20170808-COMP-DNA1 Battelle Memorial Institute 3300040611 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Desert Terrestrial soil 32.59068 -106.84254 1575847 4858 21 0 33 0 0.0 Metagenome 3300026953 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 8 (SPAdes) DOE Joint Genome Institute (JGI) 3300026953 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 102442467 221797 98 7 190 11 SRX4338377 Unrestricted 0.0 Metagenome 3300040476 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Abby Road, Pacific Northwest, WA, USA - ABBY_002-O-20170605-COMP-DNA1 Battelle Memorial Institute 3300040476 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.76243 -122.33033 4022076 13437 43 4 70 9 0.0 Metagenome 2004247005 *Microbiome Permanent Draft Hypersaline mat microbial communities from Guerrero Negro, Baja California Sur, Mexico Hypersaline mat microbial communities from Guerrero Negro, Mexico - 5-6 mm depth into microbial mat DOE Joint Genome Institute (JGI) 2004247005 Metagenome Analysis No Yes nrpace@colorado.edu Pace, Norman Yes 18523433 Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Microbial mats Hypersaline mat 27.68908 -113.917 6-9 8377132 13462 7 0 4 0 0.0 Metagenome 3300034067 *Microbiome Permanent Draft Deception Metagenome Fumarole sediment microbial communities from Whalers Bay, Deception Island, Antarctica - WBB2 The Brazilian National Council for Scientific and Technological Development (CNPq) 3300034067 Metagenome Analysis IDBA-ud v. 1.1.1 released per Amanda Bendia -- GOLD-1013 No Yes amandagbendia@gmail.com Amanda Bendia No Environmental Aquatic Volcanic Marine Unclassified fumarole sediment -63.18 -60.67 121735624 161707 70 1 187 1 0.0 Metagenome 3300025958 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleB_D2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025958 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.224476 -122.019341 113304731 245230 184 0 305 1 SRX7143105 Unrestricted 0.0 Metagenome 2058419017 *Microbiome Permanent Draft Feline fecal microbial communities from Illinois, USA cat metagenome 7 Research and Testing Laboratory 2058419017 Metagenome Analysis seqman NGEN transcriptome released per JGI data release policy No Yes sdowd@pathogenresearch.org Scot E. Dowd No Host-associated Mammals Large intestine Digestive system Fecal Feline fecal 40.11 -88.4 81417717 237029 167 0 291 0 0.0 Metagenome 3300017916 *Microbiome Permanent Draft Marine microbial communities from Caribbean coral reef seawater Marine microbial communities from Caribbean coral reef seawater, Cuba - A. cervicornis University of Illinois, Urbana-Champaign 3300017916 Metagenome Analysis MEGAHIT v1.1.1-2-g02102e1 released by JGI data releasing policy No Yes lweber@whoi.edu Laura Weber No Environmental Aquatic Intertidal zone Marine Coral reef seawater 21.10845 -78.7208 98418136 132728 60 13 72 13 0.0 Metagenome 3300028346 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #1 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028346 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 62247422 103382 36 2 57 2 SRX3241665 Unrestricted 0.0 Metagenome 3300028917 *Microbiome Permanent Draft Seawater microbial communities from Yap Trench, western Pacific Ocean Seawater microbial communities from Yap Trench, western Pacific Ocean - 37I-Yap-CTD02-0-4m 2000bp_Newsun Novogene 3300028917 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes newsun1987@126.com Xinxu Zhang No Environmental Aquatic Ocean trench Marine Unclassified seawater 9.87 138.5 930590604 1054818 351 0 373 0 0.0 Metagenome 3300029853 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37209 Beijing Genomics Institute (BGI) 3300029853 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 207365493 257482 175 0 249 0 0.0 Metagenome 3300045865 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from the Norris Geyser Basin, Yellowstone National Park, WY, United States - MSUNE_N_04 University of Wisconsin, Madison 3300045865 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.732445 -110.709871 66619381 139123 32 4 38 6 0.0 Metagenome 3300045818 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_3_E DOE Joint Genome Institute (JGI) 3300045818 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 185955271 228319 109 1 137 2 Unrestricted 121.14 Metagenome 3300042503 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jul2001D8-rr0197 DOE Joint Genome Institute (JGI) 3300042503 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 940346584 1394481 321 22 405 34 Unrestricted 24.64 Metagenome 3300034947 *Microbiome Permanent Draft Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China - SA1 Sun Yat-Sen University 3300034947 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy No Yes yuxiaoli92@163.com Xiaoli Yu No Environmental Aquatic Intertidal zone Marine Mangrove sediment mangrove sediment 23.45 116.43 424529911 994511 383 18 830 33 0.0 Metagenome 3300011781 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - seawater enrichment SCG50 University of British Columbia 3300011781 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 2779965 5415 3 0 4 0 SRX143159 0.0 Metagenome 3300049913 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2013 MD1-MC_10cm DOE Joint Genome Institute (JGI) 3300049913 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.2114 19.031 368036431 608417 312 3 525 3 Restricted 15.92 Metagenome 3300048857 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD12 DOE Joint Genome Institute (JGI) 3300048857 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.347657 -119.2808 266346221 335220 61 36 78 52 Unrestricted 106.67 Metagenome 3300025617 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025617 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 425519242 716535 230 11 313 24 SRX2569221 Unrestricted 0.0 Metagenome 3300022173 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM15.D.D DOE Joint Genome Institute (JGI) 3300022173 Metagenome Analysis spades v. 3.11.1-check Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1881 -86.344 104139372 289983 5 0 8 4 SRX8125281 Unrestricted 100.31 Metagenome 3300014228 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 211_L1_2014-6-9 San Diego State University 3300014228 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 489416 1634 13 4 30 19 0.0 Metagenome 3300037308 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from Nevada, United States - Crystal Pool (CP_S2) DOE Joint Genome Institute (JGI) 3300037308 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified Desert spring 36.4202 -116.323 7.4 2886546871 3950698 1117 14 1649 19 SRX9167301 Unrestricted 20.46 Metagenome 3300007782 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159591683 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007782 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 39149840 66495 28 0 53 0 0.0 Metagenome 3300047550 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Alabama, United States - tombigeeriver_2019_sw_WHONDRS-S19S_0020 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047550 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 31.8531 -88.1574 649353019 1115734 334 78 517 109 Unrestricted 0.0 Metagenome 3300020417 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082) CEA Genoscope 3300020417 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 19.0108 64.532 944217999 2426755 455 38 722 83 0.0 Metagenome 3300046336 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_82 DOE Joint Genome Institute (JGI) 3300046336 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9703 -106.997 692526566 1473633 989 393 1852 591 Restricted 0.0 Metagenome 3300034089 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B5A4.2 DOE Joint Genome Institute (JGI) 3300034089 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 614705881 1617045 823 3 1447 1 SRX7658966 Unrestricted 7.37 Metagenome 3300005161 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgLPA DOE Joint Genome Institute (JGI) 3300005161 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 206345588 703399 386 12 818 22 SRX2521043 Unrestricted 0.0 Metagenome 3300014908 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01290 Weill Cornell Medical College 3300014908 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.81 -73.91 23421961 44616 12 0 22 1 SRX823230 0.0 Metagenome 3300005847 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - site 2 B7 (SPADES assembly) (version 2) DOE Joint Genome Institute (JGI) 3300005847 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, rmkelly@ncsu.edu Natasha Ivanova, Robert Kelly No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6102 -110.4387 4497122 5374 8 0 6 1 SRX7118911, SRX7118910 Unrestricted 0.0 Metagenome 3300032190 *Microbiome Permanent Draft Microbial communities from the deep biosphere Subsurface marine sediment microbial communities from the Pacific Ocean - 1301_3a3b basalt glass+obsidian re-assembly Marine Biological Laboratory 3300032190 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Oceanic Marine Sediment Marine subsurface sediement 47.7535 -127.763883 68062081 155910 83 6 160 18 0.0 Metagenome 3300001238 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - A23 P2 DOE Joint Genome Institute (JGI) 3300001238 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 47955772 91902 70 0 78 0 SRX3311543 Unrestricted 0.0 Metagenome 3300012979 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung B1 Day 1 Metagenome DOE Joint Genome Institute (JGI) 3300012979 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Fecal 38.04 -122.5 1405344782 3000482 3367 35 5394 51 SRX3205480 Unrestricted 0.0 Metagenome 3300019783 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM110.S.N DOE Joint Genome Institute (JGI) 3300019783 Metagenome Analysis spades v. 3.10.1 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 40528494 111336 13 0 10 1 SRX7205072 Unrestricted 0.0 Metagenome 3300006332 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0200m University of Hawaii 3300006332 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 531018722 1198835 744 87 1141 136 0.0 Metagenome 3300041911 *Microbiome Finished Microbial communities from various locations in Russia Hot spring sediment microbial communities from Arkashin spring, Uzon, Kamchatka - 3811s Winogradsky Institute of Microbiology 3300041911 Metagenome Analysis MegaHit v. 1.2.9 released by JGI data releasing policy No Yes kublanov.ilya@gmail.com Ilya V. Kublanov No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 54.5000267 160.0033683 36055658 68879 43 0 37 0 0.0 Metagenome 3300036346 *Microbiome Permanent Draft Hot spring microbial communities from different geyser basins in Yellowstone National Park, WY, United States Hot spring water microbial communities from Norris-Mammoth Corridor, Yellowstone National Park, WY, United States - NMC.RSN_P DOE Joint Genome Institute (JGI) 3300036346 Metagenome Analysis metaspades v. 3.13.0 Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Unclassified Thermal springs Unclassified hot spring water 44.754 -110.7257 89903173 160965 79 10 142 15 SRX8735304 Unrestricted 611.76 Metagenome 3300036917 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10WT15 DOE Joint Genome Institute (JGI) 3300036917 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 542784270 1485996 698 66 1259 104 SRX8379337 Unrestricted 5.0 Metagenome 3300027596 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepC_8h DOE Joint Genome Institute (JGI) 3300027596 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 162454814 307205 105 6 150 11 SRX5245243 Unrestricted 18.64 Metagenome 3300043101 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver proximal colon microbial communities from Maple Ridge, British Columbia, Canada - Beaver2Prox.Colon1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043101 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Proximal colon proximal colon 49.18 -122.54 136843404 269544 374 15 601 14 SRX8345782 Unrestricted 44.05 Metagenome 3300022354 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Garden Lake, Rottnest Island (WA - Australia) - GL2WO1 JM13 AGRF 3300022354 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.99737 115.536569 41078422 73845 42 0 49 0 0.0 Metagenome 3300032361 *Microbiome Permanent Draft STAs constructed wetland biome Wetland sediment microbial communities from Everglades, Florida, USA - STA34-Sample03_1 Combine3 University of Florida 3300032361 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy No Yes ng.hanh24@gmail.com Hanh Nguyen No Environmental Aquatic Wetlands Freshwater Sediment sediment 26.38 -80.51 6.6-8.4 69016728 99960 59 0 143 0 0.0 Metagenome 3300017684 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_03OCT2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017684 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 224249203 430564 93 98 137 166 SRX3927696 Unrestricted 8.72 Metagenome 3300064923 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 730 in Mannville, Alberta, Canada - S00JY_0693 Microbiome Insights 3300064923 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.1127756 -111.0758746 21679662 32906 31 0 68 1 0.0 Metagenome 3300031864 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-230 DOE Joint Genome Institute (JGI) 3300031864 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh sediment 42.722 -70.847 331915479 614518 301 3 481 8 SRX6458556 Unrestricted 14.05 Metagenome 3300025352 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica - Antarctic Deep Lake Metagenome 022AM (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025352 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5627 78.1882 68214218 126657 50 2 72 4 SRX2746572 Unrestricted 0.0 Metagenome 7000000249 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765701615 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000249 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 43982010 89550 0 0 0 0 0.0 Metagenome 3300027240 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1555A-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027240 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2024 -123.9409 108469876 234662 201 25 287 45 SRX2753732 Unrestricted 0.0 Metagenome 3300031217 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #124 DOE Joint Genome Institute (JGI) 3300031217 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 258872929 489501 125 22 156 35 SRX5649417 Unrestricted 78.44 Metagenome 3300037222 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 P-3-D DOE Joint Genome Institute (JGI) 3300037222 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0472 639014590 1273499 277 4 488 1 SRX8148590 Unrestricted 10.65 Metagenome 3300044937 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_6_D DOE Joint Genome Institute (JGI) 3300044937 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 201948489 230213 106 1 132 2 Unrestricted 87.09 Metagenome 3300014302 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D2 DOE Joint Genome Institute (JGI) 3300014302 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jzz0026@lbl.gov; sgtringe@lbl.gov Jinglie Zhou; Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.052479 -121.7687 287967307 695292 328 0 664 1 SRX7181209 Unrestricted 0.0 Metagenome 3300001433 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 DOE Joint Genome Institute (JGI) 3300001433 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tiedjej@msu.edu James Tiedje No Environmental Terrestrial Unclassified Soil Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 12795419 37369 93 3 163 2 SRX1989946, SRX1989947, SRX1989948, SRX1989949 0.0 Metagenome 3300033127 *Microbiome Permanent Draft Microbial communities from various environments in Magnetic Island Reef, Townsville, Australia Macroalgae surface microbial communities from Magnetic Island Reef, Townsville, Australia - 36427 AGRF 3300033127 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes b.glasl@aims.gov.au Bettina Glasl No Host-associated Algae Unclassified Brown Algae Unclassified Macroalgae surface -19.1531 146.8641 1996669693 4732540 1384 88 2485 177 0.0 Metagenome 3300003805 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jun08 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003805 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 34667477 87254 62 31 117 45 SRX2565359 Unrestricted 0.0 Metagenome 3300027375 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepC_8d DOE Joint Genome Institute (JGI) 3300027375 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 168003143 307893 107 12 155 10 SRX5245320 Unrestricted 21.12 Metagenome 3300007899 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 160582958 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007899 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 7203343 14849 13 0 9 0 SRX023269, SRX023268 0.0 Metagenome 3300037444 *Microbiome Permanent Draft Soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA Soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA - S5.2017.400 DOE Joint Genome Institute (JGI) 3300037444 Metagenome Analysis metaspades v. 3.13.0 Yes Yes adina@iastate.edu Adina Howe No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.0127 -93.7445 1600923953 2795109 520 7 933 10 SRX9161659 Unrestricted 14.17 Metagenome 3300018078 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex DOE Joint Genome Institute (JGI) 3300018078 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 .6 1039924552 2142588 644 13 1221 17 SRX3938971 Unrestricted 5.77 Metagenome 3300006150 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t30_683M_control - microbial_metagenome University of Texas Southwestern Medical Center 3300006150 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 210872858 392282 181 0 222 0 0.0 Metagenome 3300007047 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160643649 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007047 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 31803617 65679 34 0 59 0 0.0 Metagenome 3300026192 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV89 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026192 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 268281897 529396 185 0 314 1 SRX2781883 Unrestricted 0.0 Metagenome 3300029251 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021233-93 Beijing Genomics Institute (BGI) 3300029251 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 202175734 270321 183 1 298 0 0.0 Metagenome 3300000472 *Microbiome Permanent Draft Honey bee gut microbial communities from West Haven, Conneticut, USA Honey bee gut microbial communities from West Haven, Conneticut, USA - Gilliamella SCG AB-598-B02 Broad Institute 3300000472 Metagenome Analysis released per JGI data release policy No Yes philipp.engel@yale.edu Philipp Engel No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Honey bee gut 32.2743 -110.9388 2290794 3914 2 0 4 0 0.0 Metagenome 3300021458 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BRT_1-2_MG DOE Joint Genome Institute (JGI) 3300021458 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 99921167 262544 185 11 325 27 SRX3982361 Unrestricted 6.72 Metagenome 3300041543 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Bulk soil microbial community from Lincoln, Canterbury, New Zealand - BS17_3 MetaG AgResearch, New Zealand, Mosgeil 3300041543 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Environmental Terrestrial Unclassified Soil Agricultural land Dairy farm pasture soil -43.648506 172.343549 989261647 2382911 256 26 842 51 0.0 Metagenome 3300007967 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160582958 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007967 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 52911828 99681 43 0 75 0 0.0 Metagenome 3300030453 *Microbiome Permanent Draft Marine deep subsurface microbial communities from Pacific Ocean near coastal Oregon, USA Marine deep subsurface microbial communities from Pacific Ocean near coastal Oregon, USA - F2H4a Georgia Institute of Technology 3300030453 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Deep subsurface Marine Deep subsurface Marine deep subsurface 44.6 -125.1 21248998 39599 8 1 15 1 SRX1251861 0.0 Metagenome 3300007655 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - High salinity metaG S.579 DOE Joint Genome Institute (JGI) 3300007655 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 195926721 386554 287 103 447 200 SRX2753577 Unrestricted 7.15 Metagenome 3300025130 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Groundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Crystal Spring (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025130 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; duane.moser@dri.edu Ramunas Stepanauskas; Duane Moser No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 36.42 -116.32 546584141 1179482 613 66 1028 95 SRX2948572 Unrestricted 0.0 Metagenome 3300070651 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_001-M-20190715-COMP-DNA1 3300070651 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 2995894 9794 21 5 42 12 0.0 Metagenome 3300029460 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001895-57 Beijing Genomics Institute (BGI) 3300029460 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 125255333 145388 77 0 104 0 0.0 Metagenome 3300035653 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS64_6 University of Hohenheim 3300035653 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 78807709 109188 73 0 116 0 0.0 Metagenome 3300057044 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M1P_50_52 DOE Joint Genome Institute (JGI) 3300057044 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0045281 -81.5645485 1790241055 2735050 876 7 1412 0 Unrestricted 17.75 Metagenome 3300029182 *Microbiome Permanent Draft Deep subsurface microbial communities from shale gas basins in Pennsylvania, USA Deep subsurface microbial communities from shale gas basins in Pennsylvania, USA - 2A_Day6.5 Marine Biological Laboratory 3300029182 Metagenome Analysis released Yes Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Unclassified Deep subsurface Unclassified Deep subsurface 39.898 -79.976 45198459 66928 33 0 26 0 0.0 Metagenome 3300008972 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada T0 (2) T65 (live) enrichments of Methanogenic microbial communities using Athabascan oil sands DE NOVO (2) Shell Corporation 3300008972 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 85314641 321911 86 0 206 2 0.0 Metagenome 3300034380 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from diseased Eunicella gazella from Algarve, Portugal - EG15N Molecular Research LP (MR DNA) 3300034380 Metagenome Analysis Metawrap workflow v. 1.0.6 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 43135085 58769 9 5 22 5 0.0 Metagenome 3300038741 *Microbiome Permanent Draft Seagrass microbial communities from Seahorse Key, Florida, USA Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 University of Florida 3300038741 Metagenome Analysis Megahit v. 1.1.4 released by JGI data releasing policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Plants Unclassified Roots Unclassified seagrass root 29.23 -83.735 140066034 173898 30 3 51 2 0.0 Metagenome 3300069503 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Woodworth, Northern Plains, ND, USA - WOOD_045-M-20170711-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069503 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12823 -99.24136 19246649 54857 42 3 76 7 0.0 Metagenome 3300038953 *Microbiome Draft Underwater bacterial biofilms from submerged iron mine in Quebec, Canada ? MF-C-100 Biofilms microbial communities from submerged iron mine in Gatineau, Quebec, Canada - MF-C-100 University of Quebec 3300038953 Metagenome Analysis IDBA v. 3 released by JGI data releasing policy No Yes karine.villeneuve12@gmail.com Karine villeneuve No Environmental Aquatic Groundwater Freshwater Mine Biofilms 45.47437 -75.7849 1182779222 2497264 916 8 1587 8 0.0 Metagenome 3300039817 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 087B_R1 University of Maryland 3300039817 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.69044444 27.07222222 29330813 44033 45 2 74 2 0.0 Metagenome 3300044843 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2016-rr0289 DOE Joint Genome Institute (JGI) 3300044843 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 858715074 1273976 386 55 515 76 Unrestricted 15.29 Metagenome 3300005672 *Microbiome Permanent Draft Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia Enhanced biological phosphorus removal bioreactor viral communities from the University of Queensland, Australia - SBR4-V90308 Phage Sequencing University of Queensland 3300005672 Metagenome Analysis CLC 6.0 Released per Connor Skennerton (Sep 15, 2015) No Yes c.skennerton@gmail.com Connor Skennerton No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor lab-scale EBPR bioreactor -27.49999 153.012098 18298035 36544 11 1 29 2 0.0 Metagenome 3300040437 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_001-O-22-2-20130709-GEN-DNA1 Argonne National Laboratory 3300040437 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 3214957 7510 47 24 82 40 ERX2134017 0.0 Metagenome 3300065623 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 809 in Oyen, Alberta, Canada - S00JY_0031 Microbiome Insights 3300065623 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.10302812 -110.3235998 118177349 180077 68 2 134 4 0.0 Metagenome 3300045186 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_4_F DOE Joint Genome Institute (JGI) 3300045186 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 158891931 194932 92 1 107 2 Unrestricted 97.15 Metagenome 3300051667 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Frauenau, Bavaria, Germany - BW_TH_020D DOE Joint Genome Institute (JGI) 3300051667 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.997887 13.360953 842982058 2057751 461 32 900 66 Unrestricted 9.11 Metagenome 3300026067 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026067 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 4116356054 10171416 2302 263 4071 422 SRX2740160 Unrestricted 0.0 Metagenome 3300041054 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - T5D6 IDBA-UD 100x Baseclear 3300041054 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 81086766 115404 141 8 209 9 0.0 Metagenome 2015219002 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP15 Mushroom Spring v1 DOE Joint Genome Institute (JGI) 2015219002 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23761787 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.538694 -110.797972 8.2 45311652 76046 15 0 1 0 Unrestricted 0.0 Metagenome 3300010203 *Microbiome Permanent Draft Phototrophic microbial communities Littoral zone phototrophic microbial communities from Lake Waban, Wellesley, MA - FCF6TC3 Marine Biological Laboratory 3300010203 Metagenome Analysis CLC released per JGI data release policy No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Lake Freshwater Sediment littoral 42.2876 -71.30117 43934860 51826 8 0 21 0 0.0 Metagenome 7000000338 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 508703490 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000338 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 4022 11 0 0 0 0 SRX024057 0.0 Metagenome 3300013586 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00854 Weill Cornell Medical College 3300013586 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -73.99 5543560 7723 12 0 12 0 SRX822820 0.0 Metagenome 3300029099 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 128_12M Beijing Genomics Institute (BGI) 3300029099 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 149863184 185312 118 0 169 0 ERX490938 0.0 Metagenome 7000000673 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159490532 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000673 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 62028994 113886 0 0 0 0 0.0 Metagenome 3300040758 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P13_D8 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300040758 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 737236980 1048971 190 2 271 3 SRX9635097, SRX9635096 Unrestricted 0.0 Metagenome 3300002708 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A5-12 DOE Joint Genome Institute (JGI) 3300002708 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 367492 1249 21 1 40 0 SRX1991274 Unrestricted 0.0 Metagenome 3300026947 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 6 (SPAdes) DOE Joint Genome Institute (JGI) 3300026947 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 105586595 219527 140 30 263 41 SRX4337691 Unrestricted 0.0 Metagenome 3300026316 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0927_02_20cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026316 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 513989634 982078 504 28 831 47 SRX2519704 Unrestricted 0.0 Metagenome 3300014597 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 635_B Beijing Genomics Institute (BGI) 3300014597 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 26126677 33261 14 1 14 2 ERX491289 0.0 Metagenome 3300001664 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - 5cm_reassembled University of Tennessee 3300001664 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 93391221 166087 26 0 113 8 0.0 Metagenome 3300027414 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert microbial communities from Antarctic Dry Valleys - UQ493 (SPAdes) DOE Joint Genome Institute (JGI) 3300027414 Metagenome Analysis spades v. 3.11.1 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert -78.0836 164.2839 20692400 22777 13 2 20 7 SRX2555336 Unrestricted 0.0 Metagenome 3300048937 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_3_D (version 2) DOE Joint Genome Institute (JGI) 3300048937 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 159190067 191119 105 2 127 3 Restricted 0.0 Metagenome 3300006858 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - OSPB_host_MetaG DOE Joint Genome Institute (JGI) 3300006858 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes binskeep@montana.edu William Inskeep, William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.733 -110.709 146438579 434733 131 1 258 1 SRX2918138 Unrestricted 0.0 Metagenome 3300060302 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.3C.6 SIP fraction DOE Joint Genome Institute (JGI) 3300060302 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 393099796 799446 220 4 383 8 Unrestricted 0.0 Metagenome 3300043400 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Kansas, United States - king_2019_sw_WHONDRS-S19S_0016 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043400 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 39.1041 -96.6027 238514546 422834 368 191 596 346 Unrestricted 28.42 Metagenome 3300060423 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210603_07_01 DOE Joint Genome Institute (JGI) 3300060423 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 742265881 1121761 220 123 307 168 Unrestricted 21.0 Metagenome 3300037210 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 711 E-1-D DOE Joint Genome Institute (JGI) 3300037210 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 661252111 1330510 349 5 647 5 SRX8146605 Unrestricted 8.66 Metagenome 3300021247 *Microbiome Permanent Draft Environmental DNA from pond Freshwater microbial communities from Taiko Pond in Toyama Prefecture, Japan-20161115, 0.2 Toyama Prefectural University 3300021247 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Pond Freshwater Unclassified freshwater 36.70814 137.09773 306959305 695753 123 9 188 23 0.0 Metagenome 3300014078 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Vietnam to Iowa, USA - VN8 Iowa State University 3300014078 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 2347607 3762 0 1 0 0 SRX1150321 0.0 Metagenome 3300011897 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01285 Weill Cornell Medical College 3300011897 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.72 -73.95 57153974 82265 19 0 35 0 SRX823221 0.0 Metagenome 3300029933 *Microbiome Permanent Draft Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727_2 University of Hong Kong 3300029933 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Drinking water Freshwater Unclassified Aquatic 77836995 192464 88 5 193 13 SRX246993 0.0 Metagenome 3300038564 *Microbiome Permanent Draft Sediment and seawater microbial communities from hydrothermal vent in Taiwan, China Seawater microbial communities from hydrothermal vent in Taiwan, China - Y3 Xiamen university 3300038564 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Coastal Marine Unclassified Seawater 24.83499 121.96207 66594930 104813 65 1 84 0 0.0 Metagenome 3300026089 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026089 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 4650339433 11527658 2237 117 3867 249 SRX2834452 Unrestricted 0.0 Metagenome 3300028551 *Microbiome Permanent Draft Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States - Hobet_Shaw_2 DOE Joint Genome Institute (JGI) 3300028551 Metagenome Analysis spades v. 3.11.1 Yes Yes zachary.freedman@mail.wvu.edu Zachary Freedman No Environmental Terrestrial Surface mine Soil Reclaimed soil 38.083 -81.98 24503749 72570 100 18 159 25 SRX5086750 Unrestricted 4.95 Metagenome 3300033419 *Microbiome Permanent Draft Wetland soil microbial communities from various locations Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT DOE Joint Genome Institute (JGI) 3300033419 Metagenome Analysis spades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified soil 41.3777 -82.5117 5055917069 12327232 2901 47 5210 60 SRX7532000 Unrestricted 0.0 Metagenome 3300043295 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P21_D8 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300043295 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 526427586 727333 156 0 243 4 Unrestricted 0.0 Metagenome 3300018423 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413AT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300018423 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 2207676245 4632144 2255 92 3867 182 SRX4074131 Unrestricted 15.27 Metagenome 3300025838 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025838 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 602599875 1136732 339 59 458 83 SRX2518428 Unrestricted 0.0 Metagenome 3300001960 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from South of Charleston, South Carolina, USA - GS014 J. Craig Venter Institute (JCVI) 3300001960 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine 32.506943 -79.263885 90953628 159679 90 1 158 4 0.0 Metagenome 3300040565 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Woodworth, Northern Plains, ND, USA - WOOD_001-M-20140925-COMP-DNA1 Argonne National Laboratory 3300040565 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12823 -99.24136 2378704 7850 34 1 62 6 ERX2134063 0.0 Metagenome 3300027730 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8m DOE Joint Genome Institute (JGI) 3300027730 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater 39.9879 -1.8737 820174804 1322916 422 64 541 114 SRX5248796 Unrestricted 29.99 Metagenome 7000000739 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 763820215 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000739 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 3015281 5046 0 0 0 0 0.0 Metagenome 3300031371 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-10 DOE Joint Genome Institute (JGI) 3300031371 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.759 -70.891 493119008 1002110 338 3 545 6 SRX5358335 Unrestricted 11.13 Metagenome 3300046377 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA026-TCU DOE Joint Genome Institute (JGI) 3300046377 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6876 -83.5019 114246769 359113 241 15 496 18 Unrestricted 6.59 Metagenome 3300035560 *Microbiome Permanent Draft Microbial communities from sediments and seawater samples from Gulf of Mexico Marine sediment microbial communities from Coatzacoalco region, Gulf of Mexico, Mexico - D18_station Ensenada Center for Scientific Research and Higher Education, Baja California 3300035560 Metagenome Analysis megahit v. 1.1.2 released by JGI data releasing policy Yes Yes metagenomics.group@gmail.com Asuncion Lago No Environmental Aquatic Sediment Marine Unclassified Marine Sediments 19.9309 -94.3391 151383773 362297 162 0 322 1 0.0 Metagenome 3300009617 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_13_100 DOE Joint Genome Institute (JGI) 3300009617 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 326855319 558070 199 4 351 5 SRX3003642 Unrestricted 0.0 Metagenome 3300040359 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 034_R1_022417 University of Maryland 3300040359 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.17378611 24.93292778 6557690 13531 17 0 33 0 0.0 Metagenome 3300043642 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 256-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043642 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9633 -107.0283 682975905 1663717 417 39 810 69 Unrestricted 6.8 Metagenome 3300026833 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 54 (SPAdes) DOE Joint Genome Institute (JGI) 3300026833 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 54511658 123968 45 0 98 0 SRX4340980 Unrestricted 0.0 Metagenome 3300002309 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP01-I5 3300002309 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300048006 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_190130.NP1 DOE Joint Genome Institute (JGI) 3300048006 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 609851414 1277640 415 27 584 40 Unrestricted 22.69 Metagenome 3300009958 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 8 Autonomous University of Barcelona 3300009958 Metagenome Analysis SPAdes-3.8.1-Linux released per JGI data release policy Yes Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 6929565 11545 6 0 2 0 0.0 Metagenome 3300011969 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A23_80cm_12M University of Tennessee 3300011969 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 84650482 185212 28 1 45 3 SRX710609 0.0 Metagenome 3300001040 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized -NN621 DOE Joint Genome Institute (JGI) 3300001040 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 90750 307 11 0 22 0 SRX3311855 Unrestricted 0.0 Metagenome 3300005853 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Archaeal communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter C (PS_C) MetaG (SPADES assembly) (version 2) DOE Joint Genome Institute (JGI) 3300005853 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, jim.fredrickson@pnnl.gov Natasha Ivanova, Jim Fredrickson No Environmental Aquatic Unclassified Thermal springs Unclassified Hot spring 44.376 -110.69 98624073 133267 57 0 64 0 SRX2577286 Unrestricted 0.0 Metagenome 3300050544 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf microbial communities from Olympic Peninsula, Washington, USA - D0_RHK2_4 DOE Joint Genome Institute (JGI) 3300050544 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Alder tree leaf 48.153 -124.211 288536806 359106 38 30 70 51 Unrestricted 66.31 Metagenome 3300012300 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100283 University of Pennsylvania 3300012300 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 7656659 18290 12 0 20 0 SRX756618 0.0 Metagenome 3300040518 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountain National Park, Central Plains, CO, USA - RMNP_019-M-20170807-COMP-DNA1 Battelle Memorial Institute 3300040518 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.27591 -105.54592 2826276 9536 10 0 26 3 0.0 Metagenome 3300011987 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A20_80cm_0M University of Tennessee 3300011987 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 164076072 355185 74 6 138 12 SRX710557 0.0 Metagenome 3300038380 *Microbiome Permanent Draft Diffuse flow microbial communities from hydrothermal vent near Loihi Seamount, Hawaii, USA Diffuse flow microbial communities from hydrothermal vent near Loihi Seamount, Hawaii, USA - 41 The Marine Biological Laboratory 3300038380 Metagenome Analysis IDBA-UD v. 1.1.3 released by JGI data releasing policy No Yes asmith@simons-rock.edu Amy Smith No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse Flow 18.92 -155.27 5-6 466393386 609881 410 2 549 2 0.0 Metagenome 3300029847 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36055 Beijing Genomics Institute (BGI) 3300029847 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 221254088 289512 196 0 274 0 0.0 Metagenome 3300039154 *Microbiome Permanent Draft Organic and conventional farm associated microbial communities from Canada and USA Wastewater microbial communities from Conventional dairy farm in Colorado, USA - WW32 Colorado State University 3300039154 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 40.7 -105.0 175338201 325984 232 2 380 4 0.0 Metagenome 3300022683 *Microbiome Permanent Draft Carpinteria Salt Marsh Metagenomes 2014 to 2017 Sediment microbial communities from hypersaline pond in Carpinteria, CA, United States - Winter B University of California, Irvine 3300022683 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Aquatic Intertidal zone Marine Sediment Sediment 34.401 -119.534 3377623 4945 4 0 4 0 0.0 Metagenome 3300029161 *Microbiome Permanent Draft Infant fecal microbial communities from Pittsburgh, USA Infant fecal microbial communities from Pittsburgh, USA - NECEvent2014_3_1 Banfield Lab, University of California, Berkeley 3300029161 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant fecal 40.4308 -79.9598 34588850 41721 42 0 39 0 0.0 Metagenome 3300049648 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Mesophilic digester sludge microbial communities from biogas plant in Weichs, Bavaria, Germany - PB8_MG_240418 DOE Joint Genome Institute (JGI) 3300049648 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 48.39537892 11.44760761 534742486 919190 787 7 1141 10 Unrestricted 21.84 Metagenome 3300025431 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI073_LV_200m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025431 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 208687104 373422 154 3 221 8 Unrestricted 0.0 Metagenome 3300037855 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - Pt-17 DOE Joint Genome Institute (JGI) 3300037855 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 115560103 144707 40 4 43 3 SRX9140386 Unrestricted 96.51 Metagenome 3300006260 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159915365 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006260 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 129283641 168143 85 0 131 0 0.0 Metagenome 3300056810 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - APS4_17W_T0 DOE Joint Genome Institute (JGI) 3300056810 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 2375403802 3181609 566 141 739 225 Unrestricted 25.58 Metagenome 3300049356 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MDF2 DOE Joint Genome Institute (JGI) 3300049356 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 187017839 533208 338 12 696 7 Unrestricted 9.24 Metagenome 3300071106 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_051-M-20180618-COMP-DNA1 3300071106 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 19741536 61992 71 6 132 11 0.0 Metagenome 3300000547 *Microbiome Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine microbial community from Cabo Rojo, Puerto Rico -PR CR 10% Liquid 2 DOE Joint Genome Institute (JGI) 3300000547 Metagenome Analysis released based on JGI ITS Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Enviromental 17.950367 -67.19295 103359360 208092 66 5 110 5 Unrestricted 0.0 Metagenome 3300034953 *Microbiome Permanent Draft Marine microbial communities from Baffin Bay, Canada Marine microbial communities from Baffin Bay, Canada - S132_229m Genome Quebec 3300034953 Metagenome Analysis Spades v. 3.12.0 released by JGI data releasing policy Yes Yes thomas.grevesse@gmail.com Thomas Grevesse No Environmental Aquatic Oceanic Marine Photic zone marine 78.59677 -72.15558 789337626 1883332 515 156 898 297 0.0 Metagenome 7000000225 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763820215 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000225 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 59449688 122532 0 0 0 0 0.0 Metagenome 3300028711 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150 DOE Joint Genome Institute (JGI) 3300028711 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92045766 -106.94845279 589324846 1450291 310 6 536 14 SRX5354692 Unrestricted 11.61 Metagenome 3300003193 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment Column7K5-60 454 Life Sciences 3300003193 Metagenome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.342219 40.479289 6-8 0 0 0 0 0 0 0.0 Metagenome 3300029390 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 094_4_30_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029390 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 182712619 244313 189 0 253 0 0.0 Metagenome 3300038833 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Natural salt marsh sediment microbial communities from Mersea Island, United Kingdom - Sp MINM 1A University of York 3300038833 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Natural salt marsh sediment 51.797167 0.920967 71648612 186723 104 0 187 0 0.0 Metagenome 3300037286 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Coal bed water microbial communities from the Powder River Basin, Montana, United States - FGM DOE Joint Genome Institute (JGI) 3300037286 Metagenome Analysis metaspades v. 3.13.0 Yes Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Aquatic Groundwater Deep subsurface Coalbed methane well water coal bed water 45.4351 -106.3922 563831261 719334 240 1 317 4 SRX9146692 Unrestricted 37.25 Metagenome 3300055455 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.17C.11 SIP fraction DOE Joint Genome Institute (JGI) 3300055455 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 212748677 387597 121 24 195 39 Unrestricted 15.09 Metagenome 3300034192 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A4A4.3 DOE Joint Genome Institute (JGI) 3300034192 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 244885524 788078 600 9 999 11 SRX7658910 Unrestricted 5.82 Metagenome 3300027038 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - Naphthalene biodegradation metagenome 13C8doseC (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027038 Metagenome Analysis spades v. 3.11.1 Yes Yes elm3@cornell.edu Eugene Madsen Yes 30051558 Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.292222 -73.604444 84049921 255409 127 6 156 14 Unrestricted 0.0 Metagenome 3300000044 *Microbiome Draft Arabidopsis rhizosphere microbial communities from the University of North Carolina Arabidopsis rhizosphere microbial communities from the University of North Carolina, USA - sample from Arabidopsis soil old DOE Joint Genome Institute (JGI) 3300000044 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes sgtringe@lbl.gov, sgtringe@lbl.gov; dangl@email.unc.edu Susannah Tringe, Susannah Tringe; Jeff Dangl Yes 22859206 Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9 -79.05 92517998 280064 383 8 713 10 Unrestricted 0.0 Metagenome 3300039373 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 589_B Beijing Genomics Institute (BGI) 3300039373 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 21659621 25176 12 0 25 0 ERX491245 0.0 Metagenome 3300032898 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1 DOE Joint Genome Institute (JGI) 3300032898 Metagenome Analysis spades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified soil 26.5059 -80.2517 3496727857 6447274 1074 177 1691 282 SRX5666030 Unrestricted 12.54 Metagenome 3300039638 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA Prairie soil microbial communities from Boone County, Iowa, USA - P46-LM-July2012 Iowa State University 3300039638 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land Prairie soil 42.01375 -93.783837 70568519 211820 134 8 341 23 0.0 Metagenome 3300019875 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - U3s2 DOE Joint Genome Institute (JGI) 3300019875 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9203 -106.9486 195051862 440029 230 13 495 13 SRX3944408, SRX3944409 Unrestricted 0.0 Metagenome 3300044976 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - WIN5-9-12-19 DOE Joint Genome Institute (JGI) 3300044976 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.4255 -120.5758 543531369 1428529 422 74 731 145 Restricted 6.76 Metagenome 3300044731 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME10Oct2015-rr0873 DOE Joint Genome Institute (JGI) 3300044731 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1099116763 1609375 497 147 664 193 Unrestricted 20.06 Metagenome 3300001748 *Microbiome Draft Saline water and sediment microbial community from Etoliko Lagoon, Greece Saline surface water microbial communities from Etoliko Lagoon, Greece - surface water (0 m) DOE Joint Genome Institute (JGI) 3300001748 Metagenome Analysis released based on JGI ITS Yes Yes sgtringe@lbl.gov, nckyrpides@lbl.gov Susannah Tringe, Nikos Kyrpides No Environmental Aquatic Saline Non-marine Saline and Alkaline Epilimnion Saline water and sediment 38.4825 21.315 109757507 274724 86 7 166 5 Unrestricted 0.0 Metagenome 3300056996 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F1L_18_20 DOE Joint Genome Institute (JGI) 3300056996 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.95358208 -81.6734609 2652024390 3947402 911 4 1414 5 Unrestricted 15.63 Metagenome 3300022927 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (version 2) DOE Joint Genome Institute (JGI) 3300022927 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 923506178 1716928 381 32 585 61 SRX4081052 Unrestricted 33.71 Metagenome 3300011623 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00659 Weill Cornell Medical College 3300011623 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.79 -73.95 28635590 42288 12 0 26 0 SRX822626 0.0 Metagenome 3300003358 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection D1 DOE Joint Genome Institute (JGI) 3300003358 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 27774985 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.534762 -107.782602 153090153 327491 335 2 558 1 SRX2233338, SRX1085370 Unrestricted 0.0 Metagenome 3300008002 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-14 DOE Joint Genome Institute (JGI) 3300008002 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 989815294 1719410 984 32 1573 64 SRX3198293 Unrestricted 0.0 Metagenome 3300035109 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 15_4.5_C_13_3 DOE Joint Genome Institute (JGI) 3300035109 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1866 -2.2146 942143380 2206355 273 4 433 12 SRX8233763 Unrestricted 13.05 Metagenome 3300012155 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ034 MetaG DOE Joint Genome Institute (JGI) 3300012155 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.7127 -74.5644 208494931 402978 172 21 250 46 SRX3539473 Unrestricted 0.0 Metagenome 3300030115 *Microbiome Permanent Draft Cryoconite microbial communities around the Greenland ice sheet Cryoconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_U-A1a DMAC, Technical University of Denmark 3300030115 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Ice Freshwater Cryoconite Cryconite 65.41 -38.51 221635391 396581 107 6 161 15 SRX2579837 0.0 Metagenome 3300070558 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_002-O-20180807-COMP-DNA1 Battelle Memorial Institute 3300070558 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 68.627943 -149.347229 5.14-5.78 1195585 4182 33 0 47 2 0.0 Metagenome 3300045110 *Microbiome Permanent Draft Forest soil microbial communities from boreal-temperate forests in Minnesota, USA Forest soil microbial communities from Cloquet Forestry Center, Minnesota, USA - Cloquet DRY DO F7 DOE Joint Genome Institute (JGI) 3300045110 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pankaj.trivedi@colostate.edu Pankaj Trivedi No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 46.31 -92.3 559089551 986051 216 6 385 20 Unrestricted 14.79 Metagenome 3300041717 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_138 MetaG AgResearch, New Zealand, Mosgeil 3300041717 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1358633162 2611281 266 24 946 45 0.0 Metagenome 3300003519 *Microbiome Permanent Draft Estuarine microbial communities from Mobile Bay, Alabama Estuarine microbial communities from Mobile Bay, Alabama - Sample Fl Auburn University 3300003519 Metagenome Analysis released per JGI data release policy No Yes rmm0025@auburn.edu, rmm0025@auburn.edu; mariitarichard@gmail.com Richard M. Mariita, Richard M. Mariita; Richard Mariita No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 30.4464641 -87.9922684 50479201 262339 208 31 390 38 0.0 Metagenome 3300036711 *Microbiome Permanent Draft Microbial communities from Yellowstone National Park hot springs 2018 Hot spring sediment microbial communities from Mitch's Last Stand Outflow 1, Yellowstone National Park, USA - 180603O University of Minnesota Genomics Center 3300036711 Metagenome Analysis SPAdes v. 3.11.0 released by JGI data releasing policy Yes Yes trinityh@umn.edu Trinity Hamilton No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.54669606 -110.85017802 117128738 264866 65 0 128 0 0.0 Metagenome 3300008464 *Microbiome Permanent Draft Deep sea sediment microbial communities from the Gulf of Mexico Deep sea sediment microbial communities from the Gulf of Mexico - treatment with crude oil and Corexit University of Texas, Austin 3300008464 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes derdner@utexas.edu, derdner@utexas.edu; hernando.bacosa@utexas.edu Deana Erdner, Deana Erdner; Hernando Bacosa No Environmental Aquatic Sediment Marine Unclassified sediment 27.0 -88.0 132614316 177706 40 4 63 6 0.0 Metagenome 3300004633 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio DOE Joint Genome Institute (JGI) 3300004633 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes sgtringe@lbl.gov, cpan@ou.edu Susannah Tringe, Chongle Pan No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 9.1086 -79.8436 2430516400 6898168 1130 19 1962 50 SRX2779536 Unrestricted 0.0 Metagenome 3300029126 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019844-87 Beijing Genomics Institute (BGI) 3300029126 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 116584546 137982 64 2 126 2 0.0 Metagenome 3300012009 *Microbiome Permanent Draft Saline lake microbial mat microbial communities from La Brava Lake, II Region de Antofagasta, Chile Saline lake microbial mat microbial communities from La Brava Lake, II Region de Antofagasta, Chile - La Brava 201312 INDEAR Instituto de Agrobiotecnologia Rosario 3300012009 Metagenome Analysis SPAdes 3.8.0 released by JGI data releasing policy Yes Yes dgkurt@gmail.com Daniel Kurth No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats saline lake microbial mat -23.730056 -68.246861 8.01 752080516 810551 167 2 247 4 0.0 Metagenome 3300047663 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Apalachicola River, Florida, USA - NASQAN2015_002 DOE Joint Genome Institute (JGI) 3300047663 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 29.9493 -85.0154 9492318 29194 52 13 82 18 Unrestricted 100.53 Metagenome 3300024917 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 112_LOW13 (SPAdes) DOE Joint Genome Institute (JGI) 3300024917 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 54670825 77776 32 0 40 0 SRX2721191 Unrestricted 0.0 Metagenome 3300048114 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_120822.NP1 DOE Joint Genome Institute (JGI) 3300048114 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 638167648 1479556 496 153 738 250 Unrestricted 10.66 Metagenome 3300001349 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic Microbial community sample from North Sea - COGITO 998_met_10 DOE Joint Genome Institute (JGI) 3300001349 Metagenome Analysis Yes Yes hteeling@mpi-bremen.de, hteeling@mpi-bremen.de; raperrier@lbl.gov; agrieb@mpi-bremen.de Hanno Teeling, Hanno Teeling; Rene A. Perrier; Anissa Grieb Yes 31316134 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Pelagic marine 54.184167 7.9 613988405 1247009 410 67 652 121 SRX802073 Unrestricted 0.0 Metagenome 3300056886 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M2L_50_52 DOE Joint Genome Institute (JGI) 3300056886 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0084363 -81.5683388 1327148954 2182666 643 1 1104 3 Unrestricted 12.66 Metagenome 3300005460 *Microbiome Permanent Draft Mouse cecum microbial communities from Vienna, Austria Mouse cecum microbial communities from Vienna, Austria - Mucus amended microcosms incubated with D2O DOE Joint Genome Institute (JGI) 3300005460 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes wagner@microbial-ecology.net, wagner@microbial-ecology.net; romans@mit.edu Michael Wagner, Michael Wagner; Roman Stocker No Host-associated Mammals Large intestine Digestive system Cecum Mouse cecum 48.2 16.37 438687249 699992 983 4 1451 6 SRX2838881 Unrestricted 0.0 Metagenome 3300026231 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from California, USA - DAQCA-005 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026231 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 41306342 131329 119 16 192 21 SRX2770421 Unrestricted 0.0 Metagenome 3300035647 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS43_3 University of Hohenheim 3300035647 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 134516130 173734 137 0 175 0 0.0 Metagenome 3300059745 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1554A-3 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059745 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2871 -123.9424 107096047 240083 158 41 238 63 Unrestricted 0.0 Metagenome 3300002000 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot12-2 3300002000 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 2192227 12652 56 5 143 10 0.0 Metagenome 3300049764 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J12_A_4_control DOE Joint Genome Institute (JGI) 3300049764 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 109732533 265239 258 17 526 22 Unrestricted 10.75 Metagenome 3300044857 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_USB_021 DOE Joint Genome Institute (JGI) 3300044857 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 309220457 528428 272 7 422 6 SRX12655989 Unrestricted 48.87 Metagenome 3300038316 *Microbiome Permanent Draft Liquor fermentation pit mud microbial communities from Chongqing University, China Liquor fermentation pit mud microbial communities from Luzhou, China - Meta-5-2-140-M Chongqing University 3300038316 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Bioreactor Unclassified Unclassified Unclassified Fermentation pit mud 28.88 105.45 246819911 363418 187 1 312 0 SRX691276 0.0 Metagenome 3300038947 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Natural salt marsh sediment microbial communities from Mersea Island, United Kingdom - W MINM 3A University of York 3300038947 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Natural salt marsh sediment 51.797167 0.920967 67580046 225402 121 1 233 0 0.0 Metagenome 3300011762 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00398 Weill Cornell Medical College 3300011762 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -73.95 36651813 55571 13 0 18 0 SRX822369 0.0 Metagenome 3300035055 *Microbiome Permanent Draft Forest soil microbial communities from Eldorado National Forest, California, USA Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_CLV_3.1 DOE Joint Genome Institute (JGI) 3300035055 Metagenome Analysis metaspades v. 3.13.0 Yes Yes ndove7@gmail.com Nicholas Dove No Environmental Terrestrial Temperate forest Soil Bulk soil soil 38.7966 -120.3833 1035049606 2869415 1084 92 2057 157 SRX7659673 Unrestricted 8.17 Metagenome 3300010408 *Microbiome Permanent Draft Microbial communities from soil contaminated with neutral mine drainage from mine area in Canaa dos Carajas, Brazil Microbial communities from soil contaminated with neutral mine drainage from mine area in Canaa dos Carajas, Brazil - End of the channel, sample P5-2012 Illumina 3300010408 Metagenome Analysis IDBA UD released per JGI data release policy No Yes leticiabp11@gmail.com Leticia Pereira No Environmental Terrestrial Unclassified Soil Contaminated soil -6.42916667 -50.06611111 15348415 38644 5 0 6 1 0.0 Metagenome 3300070765 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_002-O-20160727-COMP-DNA1 3300070765 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 133125984 364291 137 39 252 60 0.0 Metagenome 3300007761 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 158479027 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007761 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 3685768 9303 7 0 16 3 SRX023229, SRX023228 0.0 Metagenome 3300007053 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge C. singaporensis associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - co35is University of New South Wales 3300007053 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au, e.botte@aims.gov.au; n.webster@aims.gov.au Nicole Webster, Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Coelocarteria singaporensis -9.8241 150.825833 70141868 158799 43 4 82 5 0.0 Metagenome 3300014094 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00639 Weill Cornell Medical College 3300014094 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.81 -73.94 41127279 68930 29 1 43 0 SRX822606 0.0 Metagenome 3300013750 *Microbiome Permanent Draft Oral microbial communities from fossilized dental plaque from Dalheim, Germany Oral microbial communities from fossilized dental plaque from Dalheim, Germany - S2-Shot-B61-calc University of Oklahoma 3300013750 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skeletonized remains Remains Dental calculus Fossilized dental plaque 51.565093 8.849015 81076626 200400 142 0 264 0 SRX340011 0.0 Metagenome 3300071014 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_010-M-20190617-COMP-DNA1 3300071014 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 1854757 6202 22 0 40 0 0.0 Metagenome 3300015608 *Microbiome Permanent Draft Wastewater microbial communities from the domestic sewers Wastewater microbial communities from domestic sewers in Singapore - Site E Nov Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300015608 Metagenome Analysis CLC workbench released by JGI data releasing policy No Yes erinscm@nus.edu.sg Charmaine Ng No Engineered Wastewater Unclassified Sewage Unclassified Wastewater 1.28362 103.859825 157612938 247192 14 0 25 0 0.0 Metagenome 3300004779 *Microbiome Permanent Draft Wetland sediment microbial communities from St. Louis River estuary, Michigan under dissolved organic matter induced mercury methylation Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh DOE Joint Genome Institute (JGI) 3300004779 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes diana.nemergut@duke.edu, diana.nemergut@duke.edu.deleted Diana Nemergut No Environmental Aquatic Wetlands Freshwater Sediment Wetland sediment 46.6972164 -92.3279105 1397414514 4037768 972 37 2257 94 SRX2775466 Unrestricted 0.0 Metagenome 3300029672 *Microbiome Permanent Draft Human fecal microbial communities from healthy and liver cirrhosis patients in Hangzhou, China Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-47_Run3 Zhejiang University 3300029672 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 30.0 120.0 126457409 165366 110 0 163 0 0.0 Metagenome 3300002184 *Microbiome Permanent Draft Freshwater and sediment microbial communities from a dead zone in Lake Erie, USA Freshwater and sediment microbial communities from Lake Erie, Canada DOE Joint Genome Institute (JGI) 3300002184 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes rmmckay@bgsu.edu Robert McKay, Robert M. McKay No Environmental Aquatic Lentic Freshwater Unclassified Freshwater and sediment 42.285437 -81.355591 743990132 1652188 826 14 1377 19 SRX1991098 Unrestricted 0.0 Metagenome 3300070272 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Alaska, USA - DEJU_001-O-20180619-COMP-DNA1 3300070272 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 7457855 22440 46 10 80 19 0.0 Metagenome 3300005182 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Tolay_CordA_D2 DOE Joint Genome Institute (JGI) 3300005182 Metagenome Analysis Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.15012 -122.438774 628657804 1945823 733 19 1432 11 SRX7144827 Unrestricted 0.0 Metagenome 3300020129 *Microbiome Permanent Draft Soil bacterial communities from Switchgrass agricultural field in Lux Arbor, Michigan, USA Soil bacterial communities from Switchgrass agricultural field in Lux Arbor, Michigan, USA - site F2, fertilized Michigan State University 3300020129 Metagenome Analysis Megahit released by JGI data releasing policy Yes Yes aarongaroutte@gmail.com Aaron J. Garoutte No Environmental Terrestrial Unclassified Soil Agricultural land Soil 42.4891 -85.4641 5984243958 10277215 1375 33 2136 63 0.0 Metagenome 3300003759 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 DOE Joint Genome Institute (JGI) 3300003759 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 99127822 154323 65 0 106 1 SRX2770588 Unrestricted 0.0 Metagenome 3300000660 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 16 DOE Joint Genome Institute (JGI) 3300000660 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 1426043 4572 18 0 30 0 SRX4338976 Unrestricted 0.0 Metagenome 3300030447 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021300-75 Beijing Genomics Institute (BGI) 3300030447 Metagenome Analysis Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 240718488 297721 181 0 285 0 0.0 Metagenome 3300070718 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Alabama, USA - LENO_002-M-20180709-COMP-DNA1 3300070718 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 9354787 26160 18 5 35 7 0.0 Metagenome 3300014770 *Microbiome Permanent Draft Human fecal microbial community of Hadza hunter-gatherer and regular subjects from Tanzania and Italy Human fecal microbial community of Hadza hunter-gatherer populations from Tanzania - 10012 University of Bologna 3300014770 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal -3.6347588 35.0828588 70540332 156116 83 0 181 2 0.0 Metagenome 3300028224 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS376 with 0.8UM filter - spades JGI facility at Oak Ridge National Laboratory 3300028224 Metagenome Analysis Spades v. 3.11.1 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 32298597 58260 29 2 36 5 0.0 Metagenome 3300035695 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 DOE Joint Genome Institute (JGI) 3300035695 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1125 -122.987 2282064212 5231191 1172 137 2078 234 SRX8288947 Unrestricted 8.11 Metagenome 3300007146 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Stylissa sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina ""control"", st36ic" University of New South Wales 3300007146 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au, e.botte@aims.gov.au; n.webster@aims.gov.au Nicole Webster, Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Stylissa sp. -9.828217 150.820517 133622235 330712 40 9 55 20 0.0 Metagenome 3300025604 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 210-3 shallow-092012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025604 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 296519657 647456 188 12 285 12 SRX1987663 Unrestricted 0.0 Metagenome 3300003413 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD DOE Joint Genome Institute (JGI) 3300003413 Metagenome Analysis Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 306973563 723039 309 97 547 158 SRX2565072 Unrestricted 0.0 Metagenome 3300037132 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPN1-1-X4 DOE Joint Genome Institute (JGI) 3300037132 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3569 19.0502 480845375 806950 237 5 380 3 SRX8861432 Unrestricted 17.63 Metagenome 3300066307 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lajas Experimental Station, Atlantic Neotropical, PR, USA - LAJA_042-M-20160914-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066307 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 18.02125 -67.0769 6347491 19879 22 0 44 0 0.0 Metagenome 3300034412 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from diseased Eunicella gazella from Algarve, Portugal - EG18N Molecular Research LP (MR DNA) 3300034412 Metagenome Analysis Metawrap workflow v. 1.0.6 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 54970514 72591 20 4 29 2 0.0 Metagenome 3300049216 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Western Region, Iceland - Sphagnum teres C3_TE_ICE DOE Joint Genome Institute (JGI) 3300049216 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 2586173113 3219834 699 146 933 222 SRX14752730 Unrestricted 23.24 Metagenome 3300022602 *Microbiome Permanent Draft Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion DOE Joint Genome Institute (JGI) 3300022602 Metagenome Analysis spades v. 3.11.1 No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 46.0412 -89.6861 348392524 389997 94 15 93 16 0.0 Metagenome 3300041678 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_278 MetaG AgResearch, New Zealand, Mosgeil 3300041678 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1663992792 3630976 326 23 1233 57 0.0 Metagenome 3300040690 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_053-M-20160721-COMP-DNA1 Battelle Memorial Institute 3300040690 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 1049364 3252 16 3 18 4 0.0 Metagenome 3300042526 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18May2011-rr0675 DOE Joint Genome Institute (JGI) 3300042526 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 955411710 1436380 284 66 383 64 Unrestricted 21.26 Metagenome 3300069561 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - NIWO_008-M-20160829-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069561 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.05425 -105.58237 84434772 244983 180 32 372 50 0.0 Metagenome 3300027581 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027581 Metagenome Analysis spades v. 3.11.1 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 378048457 772289 175 55 284 94 Unrestricted 0.0 Metagenome 3300038420 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P10_D8 DOE Joint Genome Institute (JGI) 3300038420 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 862015496 1218926 220 10 335 15 SRX9404376 Unrestricted 25.7 Metagenome 3300038995 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - RDC-1_at_5-6_cm Genome Quebec 3300038995 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.80159 -73.41443 611973878 1586301 844 14 1805 22 0.0 Metagenome 2058419004 *Microbiome Permanent Draft Hot Spring microbial communities from Great Boiling Spring, Nevada Hot spring viral communities from Great Boiling Spring, Nevada - DOE Joint Genome Institute (JGI) 2058419004 Metagenome Analysis Newbler released based on JGI ITS No Yes brian.hedlund@unlv.edu Brian P. Hedlund, Brian Hedlund Yes 23555835 Environmental Aquatic Unclassified Thermal springs Unclassified Hot Spring 40.65833 -119.37772 6.37 27375388 74224 5 0 6 0 Unrestricted 0.0 Metagenome 3300056769 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB36 DOE Joint Genome Institute (JGI) 3300056769 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 25121814 64343 123 4 239 6 Restricted 17.05 Metagenome 3300009794 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3438_5245 DOE Joint Genome Institute (JGI) 3300009794 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -9.4986 -25.9999 62387210 144451 70 53 58 91 SRX2524287 Unrestricted 0.0 Metagenome 3300043776 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - Aug2018WEW_P20_D8 (version 2) DOE Joint Genome Institute (JGI) 3300043776 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 1352998797 1880992 311 14 426 18 Unrestricted 0.0 Metagenome 3300069234 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Yellowstone NP, Wyoming, USA - YELL_016-M-20210708-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069234 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 44.965771 -110.583711 1697741488 3962632 1182 49 2309 84 0.0 Metagenome 3300034121 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174 DOE Joint Genome Institute (JGI) 3300034121 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1462536162 2904682 526 134 743 231 SRX7622347 Unrestricted 10.62 Metagenome 3300013674 *Microbiome Permanent Draft Coral viral communities from the Great Barrier Reef, Australia Coral viral communities from the Great Barrier Reef, Australia - Pocillopora damicornis (fresh isolate) - PDam_NLN_DNA_SISPA Australian Institute of Marine Science 3300013674 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral tissue 9986723 22221 0 2 1 0 SRX503394 0.0 Metagenome 3300039341 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 587_B Beijing Genomics Institute (BGI) 3300039341 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 22692009 23495 15 0 17 0 ERX491241 0.0 Metagenome 3300020062 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - H2a1 DOE Joint Genome Institute (JGI) 3300020062 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9866 -107.0007 231500768 515759 243 28 461 54 SRX3958502, SRX3958503 Unrestricted 0.0 Metagenome 3300048625 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Little Wolf Creek, Tyee, Oregon, USA - littlewolfcreek_2019_sw_WHONDRS-S19S_0078 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300048625 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 43.4313 -123.5855 250947492 358254 165 63 252 73 Unrestricted 0.0 Metagenome 3300045205 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_4_E DOE Joint Genome Institute (JGI) 3300045205 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 193296525 236691 124 1 124 1 Unrestricted 102.92 Metagenome 3300024577 *Microbiome Permanent Draft Marine Fish Microbial Metagenomes Hadal fish gut microbial communities from Mariana Trench, Pacific ocean - MT200027 University of California, San Diego, Scripps Institute of Oceanography 3300024577 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton No Host-associated Fish Intestine Digestive system Unclassified fish gut 12.6339 144.7508 285517873 320401 22 0 1 4 0.0 Metagenome 3300030495 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - Or.Sf.e (v2) (version 2) DOE Joint Genome Institute (JGI) 3300030495 Metagenome Analysis spades v. 3.12.0 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.7658 -100.163 631553214 1246953 378 181 626 284 SRX2124746 Unrestricted 0.0 Metagenome 3300020404 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978) CEA Genoscope 3300020404 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -5.254 -85.2248 1052781202 2560406 416 28 684 54 0.0 Metagenome 3300044756 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 422-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044756 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9759 -107.0655 574583281 1481460 442 24 839 47 Unrestricted 6.94 Metagenome 3300009070 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_1000_biof (version 2) DOE Joint Genome Institute (JGI) 3300009070 Metagenome Analysis spades v. 3.6.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 473466628 577450 196 16 239 11 SRX2576714, SRX2576713, SRX2576712, SRX2576711, SRX2576715 Unrestricted 0.0 Metagenome 3300014654 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin06_10_metaG DOE Joint Genome Institute (JGI) 3300014654 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1449291736 2951983 734 126 1371 203 SRX3292992 Unrestricted 5.41 Metagenome 3300045925 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P12SS CTRL_191116_i DOE Joint Genome Institute (JGI) 3300045925 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 504660507 790158 179 0 286 0 SRX20650724 Unrestricted 12.13 Metagenome 3300045490 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-555 Genome Quebec 3300045490 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.859036 -121.053029 791219961 1738837 328 71 582 103 0.0 Metagenome 3300010151 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG DOE Joint Genome Institute (JGI) 3300010151 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -15.59 -75.37 582980362 1340721 27 0 33 0 SRX3197407, SRX3197408 Unrestricted 0.0 Metagenome 3300013970 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Human oral microbial communities from various locations - University of British Columbia - SCG37 University of British Columbia 3300013970 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Unclassified Human oral 608696 1653 1 0 3 0 SRX143146 0.0 Metagenome 3300032111 *Microbiome Permanent Draft Microbial communities from the deep biosphere Fracture water microbial communities from Death valley, California, USA - BLM_1 re-assembly The Marine Biological Laboratory 3300032111 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Fracking water Deep subsurface Unclassified Fracture water 36.4011 -116.468 78960508 178072 72 1 120 1 SRX791551, SRX791557, SRX1004493 0.0 Metagenome 3300060383 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210531_04_21 DOE Joint Genome Institute (JGI) 3300060383 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 1038564157 1592242 353 175 491 264 Unrestricted 29.08 Metagenome 3300047508 *Microbiome Permanent Draft Forest soil microbial communities from boreal-temperate forests in Minnesota, USA Forest soil microbial communities from Cloquet Forestry Center, Minnesota, USA - Cloquet AMB WD F5 DOE Joint Genome Institute (JGI) 3300047508 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pankaj.trivedi@colostate.edu Pankaj Trivedi No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 46.31 -92.3 681714672 1147056 263 11 465 11 Unrestricted 0.0 Metagenome 3300070677 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_001-O-20190830-COMP-DNA1 3300070677 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 12907313 41049 56 16 117 35 0.0 Metagenome 3300021956 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG DOE Joint Genome Institute (JGI) 3300021956 Metagenome Analysis spades v. 3.11.1-check Yes Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 265230573 582226 157 19 272 40 SRX4036931 Unrestricted 13.87 Metagenome 3300037350 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - HF_050217 DOE Joint Genome Institute (JGI) 3300037350 Metagenome Analysis metaspades v. 3.13.0 Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.9002 -89.352 448208787 1243376 449 33 901 62 SRX9381658 Unrestricted 6.07 Metagenome 3300048494 *Microbiome Permanent Draft Marine and freshwater sediment microbial communities from various locations Marine sediment microbial communities from Caspian Sea - Caspian_Core_2_0-4_cm DOE Joint Genome Institute (JGI) 3300048494 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes smtechtm@mtu.edu Stephen Techtmann No Environmental Aquatic Sediment Marine Unclassified Marine sediment 39.9902 51.5008 426750377 1050638 363 8 570 21 Unrestricted 6.21 Metagenome 3300014950 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 637_12M Beijing Genomics Institute (BGI) 3300014950 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 122466455 167907 89 0 115 0 ERX491291 0.0 Metagenome 3300003979 *Microbiome Permanent Draft Diffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge Diffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge - MGW_B Max Planck Institute for Plant Breeding Research 3300003979 Metagenome Analysis idba_ud500 released per JGI data release policy Yes Yes dmeier@mpi-bremen.de, dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal vent 81812881 95573 78 36 92 29 0.0 Metagenome 3300041816 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - TR_27_wk_4 DOE Joint Genome Institute (JGI) 3300041816 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9186 -107.036 138196026 424694 260 11 528 12 SRX14809568 Unrestricted 7.4 Metagenome 3300010282 *Microbiome Permanent Draft Animal gut microbial communities from fecal samples from Wisconsin, USA Capybara group fecal microbial communities from Wisconsin, USA - P1105 metagenome DOE Joint Genome Institute (JGI) 3300010282 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes apneumann2@wisc.edu Anthony Neumann No Host-associated Mammals Large intestine Digestive system Fecal Capybara group fecal 43.07 -89.4 298610105 438804 616 0 970 0 SRX2505949 Unrestricted 0.0 Metagenome 3300026256 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV76 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026256 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 392654399 819586 440 6 655 13 SRX2782315 Unrestricted 0.0 Metagenome 3300035424 *Microbiome Permanent Draft Mouse fecal microbial communities from various locations Fecal microbial communities from mouse strain SJL-C57BL/6 in USA - 7-5 Beijing Genomics Institute (BGI) 3300035424 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 40.70606 -73.99703 162896704 242113 158 0 254 0 0.0 Metagenome 3300025900 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025900 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 1456224065 3430530 857 135 1640 254 SRX3203338 Unrestricted 0.0 Metagenome 3300040994 *Microbiome Permanent Draft Freshwater lake viral communities from Lake Michigan, near Chicago, USA Freshwater lake viral communities from Lake Michigan, near Chicago, USA- 95Street140722.1V Genewiz Inc., Loyola University 3300040994 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.7189 -87.5256 30364839 57574 46 0 65 0 0.0 Metagenome 3300040372 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 052B_R1 University of Maryland 3300040372 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 61.01533611 25.66536667 6159939 12365 14 0 25 0 0.0 Metagenome 3300022440 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Lake Baghdad, Rottnest Island (WA - Australia) - LBBM2 JM89 AGRF 3300022440 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.994794 115.523776 53746517 101022 58 3 91 2 0.0 Metagenome 3300035242 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 DOE Joint Genome Institute (JGI) 3300035242 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 39.6589 -79.9058 921784719 2470917 900 78 1741 123 SRX8289792 Unrestricted 6.91 Metagenome 3300043163 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_100m_C4_0cm5cm (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043163 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 37.1343 -121.4557 410340804 671970 144 5 279 6 SRX9141054 Unrestricted 37.83 Metagenome 3300025220 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP2159 (SPAdes) DOE Joint Genome Institute (JGI) 3300025220 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 12.0 -108.06 85082372 171616 87 1 157 0 SRX1982137 Unrestricted 0.0 Metagenome 3300028600 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160317 (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300028600 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling No Environmental Aquatic Subtidal zone Marine Sediment sediment 54.1817 7.9018 3512005744 8210122 1623 144 3024 258 SRX9088753, SRX9088755, SRX9088754 Unrestricted 7.18 Metagenome 3300032303 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 17-056 Genome Quebec 3300032303 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.673607 -67.734732 620029427 1273273 302 66 521 128 0.0 Metagenome 3300044516 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME08Nov2018-rr0969 DOE Joint Genome Institute (JGI) 3300044516 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 734176389 1080474 281 51 360 66 Unrestricted 19.78 Metagenome 3300005236 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG07_land_8/20/14_0.80 DOE Joint Genome Institute (JGI) 3300005236 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu, jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield, Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 1004880326 2274986 1038 23 1809 51 SRX2725931 Unrestricted 0.0 Metagenome 3300004685 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul08 (version 2) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300004685 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 253398252 674940 215 75 375 160 SRX2565365 Unrestricted 0.0 Metagenome 3300032244 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime Ecozone, Canada - Lake 07-029 Genome Quebec 3300032244 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.415281 -65.968124 790595313 1546287 442 141 695 284 0.0 Metagenome 3300044649 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4E DOE Joint Genome Institute (JGI) 3300044649 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Unclassified Roots Unclassified Root 14.75 -16.85 932805047 1394426 18 31 43 72 Unrestricted 26.4 Metagenome 3300023717 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_128B University of California, Irvine 3300023717 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 89158579 87905 15 0 19 0 0.0 Metagenome 3300012805 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched millipede-associated microbial communities from UW Madison campus, WI, USA - HID1971I_E11 MG DOE Joint Genome Institute (JGI) 3300012805 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 75468607 88498 76 0 86 0 SRX3564669 Unrestricted 0.0 Metagenome 3300027178 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A5-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300027178 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 30042109 99723 109 3 198 4 SRX2576242 Unrestricted 0.0 Metagenome 3300033513 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C DOE Joint Genome Institute (JGI) 3300033513 Metagenome Analysis spades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified soil 41.3769 -82.5097 7823548911 17855080 3661 10 6788 22 SRX6871101 Unrestricted 8.01 Metagenome 3300029746 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37136 Beijing Genomics Institute (BGI) 3300029746 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 210871142 281382 198 0 270 0 0.0 Metagenome 3300042234 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D235_1 DOE Joint Genome Institute (JGI) 3300042234 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 168605114 237811 106 9 179 13 Unrestricted 73.51 Metagenome 3300034166 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079 DOE Joint Genome Institute (JGI) 3300034166 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1509338379 2866854 745 183 1165 307 SRX7622041 Unrestricted 12.56 Metagenome 3300026885 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - OSPB_host_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026885 Metagenome Analysis spades v. 3.11.1 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.733 -110.709 79864591 138611 26 0 41 0 SRX2918138 Unrestricted 0.0 Metagenome 3300046405 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA091-CHU DOE Joint Genome Institute (JGI) 3300046405 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6365 -83.4956 340899926 973261 358 19 669 27 Unrestricted 7.55 Metagenome 3300045232 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_5_C DOE Joint Genome Institute (JGI) 3300045232 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 209742377 243282 119 1 143 2 Unrestricted 100.23 Metagenome 3300031620 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-70 DOE Joint Genome Institute (JGI) 3300031620 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh sediment 42.722 -70.847 503175426 933610 442 1 663 1 SRX6468436 Unrestricted 12.85 Metagenome 3300008520 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 764487809 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008520 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 203612297 247224 154 0 211 0 0.0 Metagenome 3300000376 *Microbiome Draft Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA - Biofuel metagenome 3 version 4 (version 5) DOE Joint Genome Institute (JGI) 3300000376 Metagenome Analysis released based on JGI ITS No Yes hrbeller@lbl.gov Harry Beller Yes 29556105 Engineered Bioreactor Unclassified Anaerobic Unclassified Bioreactor 37.8754404 -122.2477251 4744428 4722 10 0 13 0 Unrestricted 0.0 Metagenome 3300028536 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly) DOE Joint Genome Institute (JGI) 3300028536 Metagenome Analysis SPAdes v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 3608771190 8769804 754 110 1461 163 SRX4808260, SRX4808258, SRX4808259, SRX4808255, SRX4808256, SRX4808257, SRX4808261, SRX4808262, SRX4808263 Unrestricted 0.0 Metagenome 3300017537 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS376 with 3.0UM filter JGI facility at Oak Ridge National Laboratory 3300017537 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 21123845 46334 31 3 27 8 0.0 Metagenome 3300005103 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgLAA DOE Joint Genome Institute (JGI) 3300005103 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 130016216 475465 288 13 575 13 SRX2521240 Unrestricted 0.0 Metagenome 3300015327 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_31MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015327 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 200777023 337570 4 82 6 138 SRX3922007 Unrestricted 7.57 Metagenome 3300037105 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 E-2-D DOE Joint Genome Institute (JGI) 3300037105 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 838538272 1642233 464 5 732 5 SRX9097217 Unrestricted 9.34 Metagenome 3300027194 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG S.751 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027194 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 128432589 303066 196 55 318 90 SRX2753581 Unrestricted 21.42 Metagenome 7000000641 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 160178356 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000641 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 109209679 170090 0 0 0 0 0.0 Metagenome 3300005311 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila falleni male 1 gut Cornell University 3300005311 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy No Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila falleni male adult gut 43.025606 -77.572811 84166576 226689 88 26 162 59 0.0 Metagenome 3300007827 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 764649650 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007827 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 3101195 5032 3 0 10 0 0.0 Metagenome 3300001812 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_8Aab DOE Joint Genome Institute (JGI) 3300001812 Metagenome Analysis Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 42804769 75621 48 0 89 1 SRX3322221 Unrestricted 0.0 Metagenome 3300009379 *Microbiome Permanent Draft Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 1 cmbsf Oregon State University 3300009379 Metagenome Analysis MetaSPAdes released per JGI data release policy No Yes rcolwell@coas.oregonstate.edu Frederick Colwell No Environmental Aquatic Unclassified Sediment Unclassified Marine Sediment 38.05018333 -73.82193333 458512762 1137770 351 16 596 36 0.0 Metagenome 3300039804 *Microbiome Permanent Draft Glacier soil microbial communities from Mackay Glacier, Antarctica Glacier soil microbial communities from Mackay Glacier, Antarctica - FI-1 University of Pretoria 3300039804 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Terrestrial Glacier Soil Unclassified Glacier soil -77.006 162.395 32242486 58097 17 4 32 5 0.0 Metagenome 3300029895 *Microbiome Permanent Draft Cryoconite microbial communities around the Greenland ice sheet Cryoconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_L-C3a DMAC, Technical University of Denmark 3300029895 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Ice Freshwater Cryoconite Cryconite 65.38 -38.53 211196280 377483 98 16 131 27 SRX2579839 0.0 Metagenome 3300049280 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA35 DOE Joint Genome Institute (JGI) 3300049280 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 377997896 1028067 436 0 824 0 Unrestricted 5.92 Metagenome 3300041425 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass leaf microbial community from Lincoln, Canterbury, New Zealand - RGL17_4 MetaG AgResearch, New Zealand, Mosgeil 3300041425 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 269703833 434537 38 337 75 140 0.0 Metagenome 3300069526 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Atlantic Neotropical, PR, USA - GUAN_042-M-20161004-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069526 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 17.96955 -66.8687 27358168 82946 75 3 148 6 0.0 Metagenome 3300042561 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Sep2018-rr0672 DOE Joint Genome Institute (JGI) 3300042561 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1402654571 2118984 527 83 674 123 Unrestricted 16.17 Metagenome 3300000595 *Microbiome Draft Soil microbial communities from the Kellog Biological Station, Michigan, US, in response to alternate cropping systems Switchgrass N0 pre-fert 2011 DOE Joint Genome Institute (JGI) 3300000595 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes tschmidt@msu.edu Thomas Schmidt, Thomas M. Schmidt No Environmental Terrestrial Unclassified Soil Agricultural land Soil 42.405722 -85.38702 167141875 495302 563 38 938 61 Unrestricted 0.0 Metagenome 3300019370 *Microbiome Permanent Draft Mouse fecal microbial communities from Athens, Georgia, USA Mouse fecal microbial communities from Athens, Georgia, USA - 8J1A Georgia Genomics Facility 3300019370 Metagenome Analysis megahit released by JGI data releasing policy No Yes ptu@live.unc.edu Pengcheng Tu No Host-associated Mammals Large intestine Digestive system Fecal mouse fecal 33.9519 -83.3576 103693920 163844 140 1 188 3 0.0 Metagenome 3300025456 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI073_LV_165m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025456 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 230196590 424754 174 6 245 8 Unrestricted 0.0 Metagenome 3300048871 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 079-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300048871 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.927 -106.9726 79234406 251043 158 25 308 35 Unrestricted 0.0 Metagenome 3300014138 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Venezuela to Iowa, USA - V3 Iowa State University 3300014138 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 20059708 41657 0 2 0 2 SRX1150310 0.0 Metagenome 3300008083 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764447348 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008083 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 84869181 115280 80 0 94 0 0.0 Metagenome 3300070842 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_006-O-20180807-COMP-DNA1 3300070842 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 4208112 14276 48 1 86 3 0.0 Metagenome 3300023054 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #335 DOE Joint Genome Institute (JGI) 3300023054 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 186668359 263932 75 24 92 31 SRX4396772 Unrestricted 17.99 Metagenome 3300003265 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_66_BLW_10 DOE Joint Genome Institute (JGI) 3300003265 Metagenome Analysis Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 106658482 248888 221 37 384 58 SRX2572620 Unrestricted 0.0 Metagenome 3300044580 *Microbiome Permanent Draft Lab-enriched pulp mill granules microbial communities from University of Toronto, Ontario, Canada Lab-enriched pulp mill granules microbial communities from University of Toronto, Ontario, Canada - AG-PH msp Genome Quebec 3300044580 Metagenome Analysis spades v. 3.12.0 Yes Yes emma.master@utoronto.ca Emma Master No Engineered Bioreactor Settled granule Anaerobic Unclassified pulp mill granules 43.6535 -79.3839 1054208976 2220926 373 1 998 2 0.0 Metagenome 3300017465 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS374 with 0.8UM filter JGI facility at Oak Ridge National Laboratory 3300017465 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 27272524 60327 29 6 62 12 0.0 Metagenome 3300011796 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00974 Weill Cornell Medical College 3300011796 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.6 -73.81 26007198 33744 14 0 13 0 SRX822936 0.0 Metagenome 3300014545 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS45_12 University of Hohenheim 3300014545 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 81122351 147927 62 0 128 0 0.0 Metagenome 3300036904 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 S1 1-5 DOE Joint Genome Institute (JGI) 3300036904 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0475 538056534 1106763 239 21 371 35 SRX8138671 Unrestricted 8.71 Metagenome 3300037059 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - SCT 38 III DOE Joint Genome Institute (JGI) 3300037059 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 904634853 1899858 829 114 1311 161 SRX8361567 Unrestricted 8.24 Metagenome 3300026995 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgLAB (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026995 Metagenome Analysis spades v. 3.11.1 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 88919712 252036 208 6 443 17 SRX2521235 Unrestricted 0.0 Metagenome 3300036442 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_C3 DOE Joint Genome Institute (JGI) 3300036442 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 95229338 295243 274 34 469 36 SRX8397089 Unrestricted 4.62 Metagenome 3300034773 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Sediment microbial communities from East River floodplain, Colorado, United States - 4_s17 DOE Joint Genome Institute (JGI) 3300034773 Metagenome Analysis metaspades v. 3.13.0 Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Aquatic Sediment Floodplain Unclassified sediment 38.9229 -106.9499 341247106 947064 456 15 781 22 SRX7631458 Unrestricted 6.93 Metagenome 3300070259 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_071-O-20200915-COMP-DNA1 3300070259 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 4722 16 0 1 0 0 0.0 Metagenome 3300041694 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_46 MetaG AgResearch, New Zealand, Mosgeil 3300041694 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 2048256709 4370651 297 24 1337 43 0.0 Metagenome 3300003218 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 DOE Joint Genome Institute (JGI) 3300003218 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 51.62 -128.09 323142018 683315 232 8 344 10 SRX2575206 Unrestricted 0.0 Metagenome 3300003772 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus exumae BAHAMAS.2 DOE Joint Genome Institute (JGI) 3300003772 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 519081506 1084387 6 4 7 15 SRX3340327 Unrestricted 0.0 Metagenome 3300049331 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC16 DOE Joint Genome Institute (JGI) 3300049331 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 230673573 574675 437 11 869 11 Unrestricted 16.03 Metagenome 2199352023 *Microbiome Permanent Draft Chaetoceros gracilis enriched algal communities from Idaho National Lab, USA C. gracilis enrichment Eurofins Medigenomix GmbH 2199352023 Metagenome Analysis released per JGI data release policy No Yes james.henriksen@inl.gov James Henriksen No Engineered Lab enrichment Marine media Defined media Unclassified Chaetoceros gracilis enriched 43.4666667 -112.0333333 45062473 41320 0 0 0 0 0.0 Metagenome 3300012832 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched mosquito-associated microbial communities from UW Madison campus, WI, USA - HID1973I_E6 MG DOE Joint Genome Institute (JGI) 3300012832 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 84768520 126756 75 0 109 0 SRX3564644 Unrestricted 0.0 Metagenome 3300064906 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 688 in Beauvallon, Alberta, Canada - S00JY_0399 Microbiome Insights 3300064906 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.394731 -111.1955062 58196409 86529 21 0 37 0 0.0 Metagenome 3300005524 *Microbiome Permanent Draft Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1 DOE Joint Genome Institute (JGI) 3300005524 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shadeash@msu.edu, shade.ashley@gmail.com Ashley Shade Yes 30397342 Environmental Terrestrial Unclassified Soil Unclassified Surface soil 40.7999 -76.3402 1169860983 2649266 1226 78 1795 157 SRX2837987 Unrestricted 0.0 Metagenome 3300006108 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH20Aug07 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006108 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 246691410 644772 187 36 313 78 SRX2565417 Unrestricted 0.0 Metagenome 3300002522 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert microbial communities from Antarctic Dry Valleys - UQ493 DOE Joint Genome Institute (JGI) 3300002522 Metagenome Analysis Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert -78.0836 164.2839 19512069 20040 13 2 13 1 SRX2555336 Unrestricted 0.0 Metagenome 3300031924 *Microbiome Permanent Draft Microbial communities from the deep biosphere Spring water microbial communities from the Voltri Massif travertine in Liguria, Italy - LIG_GOR_up_A1_2012 re-assembly The Marine Biological Laboratory 3300031924 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Alkaline Non-marine Saline and Alkaline Unclassified Spring water 44.597 8.7833 328104385 1030017 525 143 956 341 SRX1055339, SRX1055084, SRX1055344, SRX1055345 0.0 Metagenome 3300021400 *Microbiome Draft Cattle and sheep rumen microbial communities from New Zealand, for comparative studies Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly DOE Joint Genome Institute (JGI) 3300021400 Metagenome Analysis SPADES 3.11.0 released per Natalia and Tijana Yes Yes cfan@lbl.gov; NNIvanova@lbl.gov Hei Fan; Natalia Ivanova No Host-associated Mammals Stomach Digestive system Rumen Cattle and sheep rumen -42.26 171.6 2510896117 4516420 2149 19 3388 24 0.0 Metagenome 3300020348 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000676 (ERX556089-ERR599161) CEA Genoscope 3300020348 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -9.067 -140.6346 366824770 904227 458 3 741 14 0.0 Metagenome 3300043247 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_2 (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043247 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 606750959 1005771 124 6 220 6 SRX9140447 Unrestricted 39.65 Metagenome 3300031343 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #376 DOE Joint Genome Institute (JGI) 3300031343 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 361473041 605664 116 17 176 34 SRX5649477 Unrestricted 47.64 Metagenome 3300011845 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00698 Weill Cornell Medical College 3300011845 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.84 -73.93 42449713 66955 25 0 35 1 SRX822665 0.0 Metagenome 3300013698 *Microbiome Permanent Draft Insectivorous bat viral communities from France Insectivorous bat viral communities from France - b2 Institut Pasteur, Paris, France 3300013698 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Multiple organs Multiple systems Pooled tissues Bat tissue 15077635 26912 9 20 28 25 SRX590183 0.0 Metagenome 3300021295 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen10, Rep 3, Penicillin and Streptomycin DOE Joint Genome Institute (JGI) 3300021295 Metagenome Analysis spades v. 3.11.1-check Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4149 -119.841 136952975 134027 15 9 26 26 SRX4038402 Unrestricted 173.15 Metagenome 3300009778 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC117_MetaG DOE Joint Genome Institute (JGI) 3300009778 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 22.28 114.17 1055932134 1933070 972 5 1485 11 SRX2338797 Unrestricted 0.0 Metagenome 3300042013 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z071817_5339 DOE Joint Genome Institute (JGI) 3300042013 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.201 -97.9447 385806350 993923 470 33 839 56 Unrestricted 10.63 Metagenome 3300029985 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_1 DOE Joint Genome Institute (JGI) 3300029985 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 674894981 1267763 401 155 631 239 SRX5356846 Unrestricted 10.39 Metagenome 3300013000 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM1 DOE Joint Genome Institute (JGI) 3300013000 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Fungi Unclassified Mycelium Unclassified fungus garden -21.165 -47.848 513701281 876401 283 216 493 409 Unrestricted 51.34 Metagenome 3300008512 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 160643649 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008512 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 96226593 125143 74 0 113 0 0.0 Metagenome 3300029027 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 274_M Beijing Genomics Institute (BGI) 3300029027 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 132769321 166761 107 0 154 0 ERX491058 0.0 Metagenome 3300011530 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00516 Weill Cornell Medical College 3300011530 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.9 -73.84 23578459 32990 10 0 12 0 SRX822485 0.0 Metagenome 3300038639 *Microbiome Permanent Draft Freshwater sediment microbial communities from Chandeleur Islands, USA Subtidal sediment core microbial communities from Chandeleur Islands, USA - JSubC2 University of Alabama 3300038639 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Wetlands Freshwater Sediment Subtidal sediment core 29.862806 -88.841194 6683250 21024 29 0 51 1 0.0 Metagenome 3300007095 *Microbiome Permanent Draft Cephalotes ants gut microbiomes Ant gut microbial communities from Cephalotes minutus, Brazil Harvard University 3300007095 Metagenome Analysis IDBA-UD released by Yi Hu Yes Yes pl356@drexel.edu, yihu.bnu@gmail.com Piotr Lukasik, Yi Hu No Host-associated Arthropoda: Insects Gut Digestive system Unclassified ant gut -19.11 -48.24 115122484 239198 38 1 59 1 0.0 Metagenome 3300043458 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-395 Genome Quebec 3300043458 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 54.143992 -111.499621 976522528 2307728 377 42 597 90 0.0 Metagenome 3300014529 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 78_4M Beijing Genomics Institute (BGI) 3300014529 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 78391073 83579 36 0 45 0 ERX491306 0.0 Metagenome 3300006800 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_12_20cm DOE Joint Genome Institute (JGI) 3300006800 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2597734515 5742384 2415 75 4005 122 SRX2727525 Unrestricted 0.0 Metagenome 3300039716 *Microbiome Permanent Draft AMD sediment microbial communities from mine in Fankou, China AMD sediment microbial communities from mine in Fankou, China - FK5 Magigene technology co., LTD. 3300039716 Metagenome Analysis Spades v. 3.14.0 released by JGI data releasing policy No Yes zhouyk5@mail2.sysu.edu.cn Yangkai Chou No Engineered Wastewater Mine water Industrial wastewater Sediment acid mine drainage sediment 25.116 113.632 1235840874 2150040 570 57 823 70 0.0 Metagenome 3300009604 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 DOE Joint Genome Institute (JGI) 3300009604 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 39.48 7.24 420410119 825861 269 0 423 0 SRX2753803 Unrestricted 0.0 Metagenome 3300023543 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_42C University of California, Irvine 3300023543 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 130628124 131580 14 0 25 0 0.0 Metagenome 3300043737 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - III_P72_A100 DOE Joint Genome Institute (JGI) 3300043737 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.2041 -62.7741 685820397 1960430 496 8 1000 22 Unrestricted 7.2 Metagenome 3300048023 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_201007.NP1 DOE Joint Genome Institute (JGI) 3300048023 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 976230728 2100550 577 144 952 212 Unrestricted 12.03 Metagenome 3300001539 *Microbiome Permanent Draft Ecteinascidia turbinata symbiotic microbial communities from the Caribbean mangrove Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 2 DOE Joint Genome Institute (JGI) 3300001539 Metagenome Analysis Yes Yes davidhs@lsi.umich.edu David Sherman No Host-associated Tunicates Unclassified Ascidians Unclassified Ecteinascidia turbinata 24.5512 -81.8083 808986041 1595678 13 8 22 35 SRX2553647 Unrestricted 0.0 Metagenome 3300031612 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #127 DOE Joint Genome Institute (JGI) 3300031612 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5596 77.8957 757620576 1528498 273 127 398 219 SRX5650081 Unrestricted 0.0 Metagenome 3300044478 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - LOSB15-9-18-19 DOE Joint Genome Institute (JGI) 3300044478 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.0527 -120.8547 539376232 1331180 387 39 735 84 Restricted 7.68 Metagenome 3300047997 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_130911.NP2 DOE Joint Genome Institute (JGI) 3300047997 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 703583862 1504855 505 94 800 162 Unrestricted 11.92 Metagenome 3300013184 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100489 University of Pennsylvania 3300013184 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 19931844 42201 18 0 31 1 SRX756509 0.0 Metagenome 3300011454 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01078 Weill Cornell Medical College 3300011454 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.97 13582250 17341 9 0 8 0 SRX823033 0.0 Metagenome 3300053160 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere DOE Joint Genome Institute (JGI) 3300053160 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.587688 -123.193613 625644110 1136820 316 135 479 189 Unrestricted 13.47 Metagenome 3300011829 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00244 Weill Cornell Medical College 3300011829 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.77 -73.98 36669311 63057 22 0 33 1 SRX822223 0.0 Metagenome 3300025070 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025070 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.21 -77.52 162566764 365462 2 0 7 0 SRX2927447 Unrestricted 0.0 Metagenome 3300010037 *Microbiome Permanent Draft Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25 DOE Joint Genome Institute (JGI) 3300010037 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes klgravuer@ucdavis.edu Kelly Gravuer No Environmental Terrestrial Grasslands Soil Unclassified Serpentine soil 38.8693 -122.4282 1874530997 4065529 1501 34 2691 50 SRX2525415 Unrestricted 0.0 Metagenome 3300049452 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 soil DOE Joint Genome Institute (JGI) 3300049452 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.587894 -123.192683 6.88 225584040 402368 159 10 334 20 Unrestricted 19.55 Metagenome 3300014830 *Microbiome Permanent Draft Activated sludge bacterial and viral communities from EBPR bioreactors in Australia Activated sludge bacterial and viral communities from EBPR bioreactors in Brisbane, Australia - M92511 California Institute of Technology 3300014830 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Activated sludge -27.485973 153.190699 467432116 969528 260 20 424 29 SRX646158 0.0 Metagenome 3300045584 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Platte River, Nebraska, USA - NASQAN2011_435 DOE Joint Genome Institute (JGI) 3300045584 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 41.0152 -96.1577 192386909 612531 328 42 594 101 Unrestricted 0.0 Metagenome 3300071123 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_001-M-20200804-COMP-DNA1 3300071123 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 109950108 298670 97 9 201 11 0.0 Metagenome 3300025794 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial mat communities from California, USA to study Microbial Dark Matter (Phase II) - Cone Pool mat layer H metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025794 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; jspear@mines.edu; jkjarett@lbl.gov Ramunas Stepanauskas; John Spear; Jessica Jarett No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 226036176 435640 320 3 456 6 SRX2526467 Unrestricted 0.0 Metagenome 3300001820 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM5, ROCA_DNA135_2.0um_27f 3300001820 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River plume Marine Plankton Marine plankton 12.4145 -52.2197 13330863 27463 17 4 22 14 0.0 Metagenome 3300033276 *Microbiome Permanent Draft Meromitic Lake A Freshwater microbial communities from meromitic lake A, Ellesmere Island, Canada - Sample 40m re-sequencing Laval University 3300033276 Metagenome Analysis SPADES v. 3.10.1 released by JGI data releasing policy Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 82.99445 -75.443367 717507590 3095754 924 7 1863 4 0.0 Metagenome 3300022792 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S15 Version 2 University of New South Wales 3300022792 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 35594763 63495 18 7 18 10 0.0 Metagenome 3300042582 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Astalotermes quietus from Ebogo II, Mbalmayo, Cameroon - Ast373 Eurofins MWG Operon 3300042582 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 3.381958 11.463214 798541653 799463 140 21 227 30 0.0 Metagenome 3300002750 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-C DOE Joint Genome Institute (JGI) 3300002750 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.33 84384 269 12 3 24 5 SRX1991444 Unrestricted 0.0 Metagenome 3300035093 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_03D_17 DOE Joint Genome Institute (JGI) 3300035093 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9141 -147.8344 605345240 1451313 435 5 834 9 SRX7633854 Unrestricted 6.98 Metagenome 3300040700 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 059_R1_022417 University of Maryland 3300040700 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.99243056 25.70189444 1127356 3401 7 0 11 0 0.0 Metagenome 3300005277 *Microbiome Permanent Draft Arabidopsis rhizosphere microbial communities from the University of North Carolina Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0 v2 (version 2) DOE Joint Genome Institute (JGI) 3300005277 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes sgtringe@lbl.gov, sgtringe@lbl.gov; dangl@email.unc.edu Susannah Tringe, Susannah Tringe; Jeff Dangl Yes 22859206 Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9 -79.05 78555370 236783 546 23 1136 38 Unrestricted 0.0 Metagenome 3300048580 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater bacterial communities from Lake Mendota, Wisconsin, United States - ME_2020-08-05_10m_Bacteria_A DOE Joint Genome Institute (JGI) 3300048580 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 873506674 1305220 347 34 494 43 Unrestricted 0.0 Metagenome 3300028790 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122 DOE Joint Genome Institute (JGI) 3300028790 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.920406 -106.94828662 667283397 1872454 441 22 801 26 SRX5354615 Unrestricted 8.5 Metagenome 3300033082 *Microbiome Permanent Draft Mercury Periphyton Project Periphyton microbial communities from the St. Maurice River, Quebec, Canada - S2.F1 Genome Quebec 3300033082 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Periphyton Freshwater periphyton 47.893588 -73.756927 270967798 625424 338 121 667 236 0.0 Metagenome 3300065606 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 800 in Cowley, Alberta, Canada - S00JY_0170 Microbiome Insights 3300065606 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.2618822 -113.3619356 153919736 224428 60 0 108 0 0.0 Metagenome 3300010226 *Microbiome Permanent Draft Soil microbial communities from Bangor area, North Wales, UK enriched with cashew seed oil Soil microbial communities from Bangor area, North Wales, UK enriched with cashew seed oil - week3, replicate 2 Fidelity Systems Inc 3300010226 Metagenome Analysis Phred/Phrap/Consed v. 23.0 released per JGI data release policy Yes Yes stepan.toshchakov@gmail.com Stepan Toshchakov No Engineered Lab enrichment Unclassified Unclassified Unclassified soil 53.24 -4.01 101834609 232321 51 2 76 4 0.0 Metagenome 3300019735 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BLC_1-2_MG DOE Joint Genome Institute (JGI) 3300019735 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 127879788 315256 241 19 525 30 Unrestricted 3.66 Metagenome 3300056891 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_84-s20 day 365 DOE Joint Genome Institute (JGI) 3300056891 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1709391025 2439033 349 194 437 202 Unrestricted 42.28 Metagenome 3300069409 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_002-O-20170619-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069409 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 264721565 672854 226 27 423 57 0.0 Metagenome 3300012193 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00898 Weill Cornell Medical College 3300012193 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.92 19168255 30311 12 0 17 0 SRX822861 0.0 Metagenome 3300038773 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog70 BILS 3300038773 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 2503990 6591 9 3 12 3 ERX1594892 0.0 Metagenome 3300020239 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000003 (ERX555909-ERR598959) CEA Genoscope 3300020239 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 18.4017 39.855 245689549 611413 187 13 300 21 0.0 Metagenome 3300051330 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water viral communities from Sandhills, Nebraska, United States - NSL_Border_2018_V DOE Joint Genome Institute (JGI) 3300051330 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.79185 -102.53404 235041742 630465 92 3 145 6 Unrestricted 134.89 Metagenome 3300001485 *Microbiome Permanent Draft Sheep rumen microbial communities from New Zealand from high and low methane emitting sheep Sheep rumen microbial communities from New Zealand - Rank08_low DOE Joint Genome Institute (JGI) 3300001485 Metagenome Analysis Velvet Released because these are assemblies from SRA data No Yes janine.kamke@agresearch.co.nz, janine.kamke@uni-wuerzburg.de Janine Kamke No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen -40.352 175.608 452572733 958504 932 42 1611 69 0.0 Metagenome 3300042744 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T3_23-Sept-14 NMDC pilot DOE Joint Genome Institute (JGI) 3300042744 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 58735100 145850 178 34 322 68 SRX2838891 0.0 Metagenome 3300039088 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - RDC-2_at_5-6_cm Genome Quebec 3300039088 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.80159 -73.41443 898129868 2182791 917 8 1957 17 0.0 Metagenome 3300003155 *Microbiome Permanent Draft Broiler chicken cecum microbial communities from the University of Warwick, United Kingdom Broiler Chicken cecum microbial communities from the University of Birmingham, UK University of Birmingham 3300003155 Metagenome Analysis CLC NGS Cell v. 5.1 Made public because these are downloaded from Genbank No Yes m.j.sergeant@warwick.ac.uk Sergeant,M. Yes 24657972 Host-associated Birds Large intestine Digestive system Ceca Broiler chicken cecum 50.9047 -3.5233 286286924 627024 359 1 561 3 0.0 Metagenome 3300030365 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35541 Beijing Genomics Institute (BGI) 3300030365 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 163752682 220688 151 1 212 2 0.0 Metagenome 3300012646 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100663 University of Pennsylvania 3300012646 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 25514982 61016 20 0 20 0 SRX756431 0.0 Metagenome 3300041571 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_290 MetaG AgResearch, New Zealand, Mosgeil 3300041571 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 2518176381 5071045 332 40 1307 79 0.0 Metagenome 3300020725 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 23OCT2008 epilimnion DOE Joint Genome Institute (JGI) 3300020725 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 133408301 265187 121 27 198 41 Unrestricted 0.0 Metagenome 3300029236 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 507_M Beijing Genomics Institute (BGI) 3300029236 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 179612334 225306 121 0 218 0 ERX491158 0.0 Metagenome 3300069615 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_002-M-20170705-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069615 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 25061503 75081 89 2 163 6 0.0 Metagenome 3300045742 *Microbiome Permanent Draft Sediment microbial communities from various rivers and their estuaries in the United States Sediment microbial communities from Eel River, Massachusetts, United States - BTRS19_Sengupta_11F DOE Joint Genome Institute (JGI) 3300045742 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sg.aditi@gmail.com Aditi Sengupta No Environmental Aquatic River Freshwater Sediment sediment 41.9107 -70.6439 2160199824 3498331 1165 98 1874 141 Unrestricted 13.08 Metagenome 3300050146 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_SEK2_2_to_RHK2 DOE Joint Genome Institute (JGI) 3300050146 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.153 -124.211 389423146 523412 96 34 151 48 Unrestricted 16.55 Metagenome 3300026121 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026121 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 4478987780 11086922 2288 183 4081 260 SRX2740406 Unrestricted 0.0 Metagenome 3300012519 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610 DOE Joint Genome Institute (JGI) 3300012519 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Environmental Terrestrial Unclassified Soil Unclassified unplanted soil 35.9076 -79.0506 206081743 548699 285 9 632 11 SRX3527517 Unrestricted 0.0 Metagenome 2166559011 *Microbiome Permanent Draft Microbial communities from the Atlantic Ocean and human feces from France, grouped together for a comparative study Human fecal microbial communities from France, for comparison studies - Human5 (TS28 0613) 454 Life Sciences 2166559011 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Host-associated Mammals: Human Large intestine Digestive system Fecal Environmental and host-associated 45.460129 4.495284 95343112 261570 604 0 1279 1 0.0 Metagenome 3300055493 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.1W.6 SIP fraction DOE Joint Genome Institute (JGI) 3300055493 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 157658477 297201 82 1 133 8 Unrestricted 15.63 Metagenome 3300061650 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0081 Microbiome Insights 3300061650 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 114297633 163220 42 0 59 0 0.0 Metagenome 3300010863 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction) DOE Joint Genome Institute (JGI) 3300010863 Metagenome Analysis metalrec/blasr v. metalrec version 1.0.2/blasr 1.3.1 Yes Yes cpan@ou.edu Chongle Pan Yes 29358607 Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 9.1086 -79.8436 232586881 389958 90 6 135 11 SRX3886490, SRX3886489, SRX3886493, SRX3886494, SRX3886491, SRX3886492 Unrestricted 0.0 Metagenome 3300041449 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass leaf microbial community from Lincoln, Canterbury, New Zealand - RGL18_7 MetaG AgResearch, New Zealand, Mosgeil 3300041449 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 736619410 1186382 109 105 292 145 0.0 Metagenome 3300004175 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 13_LOW5 DOE Joint Genome Institute (JGI) 3300004175 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 180063411 476941 93 1 176 0 SRX2720116 Unrestricted 0.0 Metagenome 3300009900 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S15 University of New South Wales 3300009900 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 37232009 67040 18 7 18 10 0.0 Metagenome 3300070636 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_005-M-20180801-COMP-DNA1 3300070636 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 34725582 105730 156 26 279 50 0.0 Metagenome 3300012358 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG DOE Joint Genome Institute (JGI) 3300012358 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.5673 -123.4758 1733188791 3237415 1044 27 1769 53 SRX3372709 Unrestricted 0.0 Metagenome 3300027688 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.DN (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027688 Metagenome Analysis spades v. 3.11.1 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 547013093 1107057 259 10 369 18 Unrestricted 0.0 Metagenome 3300027407 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A5-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300027407 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 17522440 58485 82 4 155 6 SRX1990529 Unrestricted 0.0 Metagenome 3300002510 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS upper layer 2012 DOE Joint Genome Institute (JGI) 3300002510 Metagenome Analysis Yes Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic microbial mat 44.534 -110.7978 138130633 258379 90 0 151 0 SRX2554539 Unrestricted 0.0 Metagenome 3300016661 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water catchment in Singapore - WC_Site 2a, Aug Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016661 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 1.35 103.87 71141932 99094 12 3 18 3 0.0 Metagenome 7000000102 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 158458797 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000102 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 28914888 44119 0 0 0 0 0.0 Metagenome 3300030318 *Microbiome Permanent Draft Nasopharyngeal microbial communities from infants in Muntinlupa City, Philippines and Johannesburg, South Africa Nasopharyngeal microbial communities from infants in Muntinlupa City, Philippines - RITM077I10 J. Craig Venter Institute 3300030318 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Respiratory system Nasopharynx Nasopharyngeal 14.4098512 121.034836 4184198 4534 6 0 4 0 SRX1670510 0.0 Metagenome 3300050334 *Microbiome Permanent Draft American moose and American beaver microbial community from Toronto, Canada American moose rumen microbial community from Toronto, Canada - MR-C University of Toronto 3300050334 Metagenome Analysis Custom JGI assembly. These are public NCBI metagenomes erroneously loaded as private. Galina Ovchinnikova Yes Yes camillaln@gmail.com Camilla Nesb? No Host-associated Mammals Stomach Digestive system Rumen American moose rumen 43.66 -79.4 224274237 293603 198 0 259 0 SRX13466129 0.0 Metagenome 3300036790 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in California, United States - CAC_9 DOE Joint Genome Institute (JGI) 3300036790 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil 35.5 -121.0 2421893946 3454080 575 94 831 128 SRX8384332 Unrestricted 14.67 Metagenome 3300029103 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 179_M Beijing Genomics Institute (BGI) 3300029103 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 143634350 204706 160 0 237 0 ERX490972 0.0 Metagenome 3300045191 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_1_D DOE Joint Genome Institute (JGI) 3300045191 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 155095066 181679 99 1 106 2 Unrestricted 115.51 Metagenome 3300038412 *Microbiome Permanent Draft Acid mine drainage microbial communities from coal mines in Pennsylvania and Ohio, United States Lab enriched acid mine drainage microbial communities from Akron, Ohio, USA - PML1_21D DOE Joint Genome Institute (JGI) 3300038412 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shagun2260@gmail.com Shagun sharma No Engineered Wastewater Mine water Industrial wastewater Acid mine drainage acid mine drainage 41.0775 -81.5114 851026495 1977956 718 41 1263 76 SRX9404291 Unrestricted 14.15 Metagenome 2149837019 *Microbiome Permanent Draft Human fecal microbial communities from the University of Arizona, for HMP training Human fecal microbial communities from the University of Arizona (HMP) - Em2 Chinese National Human Genome Center, Beijing 2149837019 Metagenome Analysis released per JGI data release policy No Yes mbsulli@email.arizona.edu, mbsulli@gmail.com Matthew Sullivan No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 56.13 9.24 24499042 35752 155 1 290 0 0.0 Metagenome 3300024224 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK14 DOE Joint Genome Institute (JGI) 3300024224 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 181228920 497361 347 24 499 37 SRX4547514 Unrestricted 7.2 Metagenome 3300005746 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS848 Marine Biological Laboratory 3300005746 Metagenome Analysis Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow hydrothermal vent diffuse flow 18.376929 -81.797906 6.65 14754474 19942 1 0 6 0 0.0 Metagenome 3300013591 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100334 University of Pennsylvania 3300013591 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3549078 8304 8 5 7 9 SRX756323 0.0 Metagenome 3300048107 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_110427.NP2 DOE Joint Genome Institute (JGI) 3300048107 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 463117422 969684 394 80 544 156 Unrestricted 10.7 Metagenome 3300027870 *Microbiome Permanent Draft Freshwater and sediment microbial communities from a dead zone in Lake Erie, USA Freshwater and sediment microbial communities from Lake Erie, Canada (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027870 Metagenome Analysis spades v. 3.11.1 Yes Yes rmmckay@bgsu.edu Robert M. McKay No Environmental Aquatic Lentic Freshwater Unclassified Freshwater and sediment 42.285437 -81.355591 1731294623 3394051 895 16 1433 33 SRX1991098 Unrestricted 0.0 Metagenome 3300027562 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027562 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 299194425 755671 244 21 429 28 SRX3312717 Unrestricted 0.0 Metagenome 3300024442 *Microbiome Permanent Draft Vaginal microbial communities from lab mice Vaginal microbial communities from lab mice with HSV-2 infection, Madrid, Spain - C1, stage 2 Polytechnic University of Valencia 3300024442 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Vagina Reproductive system Unclassified mice vagina 40.4191094 -3.6725753 860548 1326 0 0 1 0 0.0 Metagenome 3300034995 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - C5-0 Autonomous University of Barcelona 3300034995 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 89034133 362278 1004 0 1882 0 0.0 Metagenome 3300024904 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 122_LOW14 (SPAdes) DOE Joint Genome Institute (JGI) 3300024904 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 32710381 51116 20 0 13 0 SRX2721595 Unrestricted 0.0 Metagenome 3300034420 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A1A4.1 DOE Joint Genome Institute (JGI) 3300034420 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 512579103 1363850 676 5 1179 13 SRX7658985 Unrestricted 7.42 Metagenome 3300026773 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A5-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300026773 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 23673299 77565 113 4 211 4 SRX1991149 Unrestricted 0.0 Metagenome 3300069582 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, Pacific Southwest, CA, USA - SJER_001-O-20170314-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069582 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.10878 -119.73228 122952916 349612 281 45 543 61 0.0 Metagenome 3300070500 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_067-M-20190730-COMP-DNA1 Battelle Memorial Institute 3300070500 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 38.893949 -78.135536 6.17-6.73 1338181 4489 19 4 25 4 0.0 Metagenome 3300028577 *Microbiome Permanent Draft Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG DOE Joint Genome Institute (JGI) 3300028577 Metagenome Analysis spades v. 3.11.1 Yes Yes rbneum@uw.edu Rebecca Neumann No Host-associated Plants Rhizosphere Roots Soil rhizosphere 47.6516 -122.3045 825308829 1882206 523 9 826 20 SRX5271536 Unrestricted 10.06 Metagenome 3300065530 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 809 in Oyen, Alberta, Canada - S00JY_0317 Microbiome Insights 3300065530 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.10302812 -110.3235998 15743710 24593 19 0 38 0 0.0 Metagenome 3300012952 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome DOE Joint Genome Institute (JGI) 3300012952 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified seawater 26.049 -17.4585 2976120333 6078271 1039 1500 1512 2458 SRX3565215 Unrestricted 0.0 Metagenome 3300044625 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME10Oct2005-rr0878 DOE Joint Genome Institute (JGI) 3300044625 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1153780880 1756223 487 71 643 92 Unrestricted 19.72 Metagenome 3300049573 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 DOE Joint Genome Institute (JGI) 3300049573 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.40849 -82.168434 1329129869 2138474 559 28 897 41 Unrestricted 15.03 Metagenome 3300071007 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_005-M-20210527-COMP-DNA1 3300071007 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 67792 240 7 0 10 0 0.0 Metagenome 3300029311 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Sweden Biosolids microbial communities from sewage treatment plant in Sweden - SWESTP12 - Kappala-digested 113 University of Gothenburg 3300029311 Metagenome Analysis released Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified biosolids 59.355554 18.227079 232803619 384660 219 0 308 1 0.0 Metagenome 3300060654 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_002-M-20210728-comp-1 DOE Joint Genome Institute (JGI) 3300060654 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 40.041058 -105.547043 2385927688 3841105 436 93 717 126 Unrestricted 16.23 Metagenome 3300005895 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_101 DOE Joint Genome Institute (JGI) 3300005895 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 308047603 1038716 418 8 748 16 SRX2564566, SRX2581038 Unrestricted 0.0 Metagenome 3300025379 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025379 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 124953457 258505 63 13 94 28 SRX2518392 Unrestricted 0.0 Metagenome 3300044494 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 257-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044494 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9634 -107.0273 763496329 1956160 503 36 904 73 Unrestricted 7.13 Metagenome 3300042615 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Kalotermes flavicollis from BAM Federal Institute for Materials Research and Testing, Berlin, Germany - Kf353 Eurofins MWG Operon 3300042615 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 52.443245 13.287523 1465952863 1534885 223 36 236 83 0.0 Metagenome 3300045087 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal system in Merced County, California, USA - WIN4-9-19-19 DOE Joint Genome Institute (JGI) 3300045087 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.4258 -120.6125 331071486 816402 407 27 736 46 Restricted 12.95 Metagenome 3300013708 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100255 University of Pennsylvania 3300013708 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 11203612 30634 25 1 29 1 SRX756646 0.0 Metagenome 3300026166 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF91A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026166 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 136975063 338414 144 235 225 418 SRX2781886 Unrestricted 0.0 Metagenome 7000000548 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 764143897 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000548 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 227268 583 0 0 0 0 SRX025203 0.0 Metagenome 3300044273 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from YNP geothermal spring, Wyoming, USA - Washburn DOE Joint Genome Institute (JGI) 3300044273 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Sediment 44.7649 -110.4303 409712853 553018 282 3 337 0 Unrestricted 116.57 Metagenome 3300026639 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1104 (SPAdes) DOE Joint Genome Institute (JGI) 3300026639 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 3019424 10101 35 3 78 4 SRX1987003 Unrestricted 0.0 Metagenome 3300009456 *Microbiome Permanent Draft Host-associated microbial communities of aphids from plants in several locations around USA Microbial communities of aphids from Ribes sp. in Pocatello, ID, USA - Hyperomyzus lactucae CVD94-86 seqcov University of Texas, Austin 3300009456 Metagenome Analysis CLC Genomics released per JGI data release policy Yes Yes becky.chong@utexas.edu Rebecca Chong No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Ribes sp. 42.899137 -112.461301 151513780 78958 1 1 1 1 0.0 Metagenome 3300022867 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1 DOE Joint Genome Institute (JGI) 3300022867 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 144719058 290869 51 19 66 35 SRX4396127 Unrestricted 20.57 Metagenome 3300042668 *Microbiome Draft Microbial community shotgun study from Ayvalik Saltern, Turkey Non-marine hypersaline microbial communities of Ayvalik Saltern, Turkey - BM8 spades_assembly Macrogen Inc 3300042668 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy No Yes albayrakece@gmail.com ece albayrak No Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Unclassified brine water 39.3192 26.6924 1318308801 3016398 361 34 812 48 0.0 Metagenome 3300005659 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB5-Kit DOE Joint Genome Institute (JGI) 3300005659 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 1215664355 3208437 1299 45 2167 95 SRX2838871 Unrestricted 0.0 Metagenome 7000000135 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 158499257 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000135 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 834041 2188 0 0 0 0 SRX023577, SRX023578 0.0 Metagenome 3300046351 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_138 DOE Joint Genome Institute (JGI) 3300046351 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9236 -106.9499 193356974 496672 594 123 1121 175 Restricted 0.0 Metagenome 3300043253 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_8 (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043253 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 632863960 1022933 126 9 210 14 SRX9140450 Unrestricted 38.34 Metagenome 3300046724 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 soil DOE Joint Genome Institute (JGI) 3300046724 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121531 -123.271098 5.16 1452501463 2337495 378 17 617 23 Unrestricted 14.11 Metagenome 3300031357 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-70 DOE Joint Genome Institute (JGI) 3300031357 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.759 -70.891 321298680 673545 359 9 596 16 SRX5358432 Unrestricted 11.38 Metagenome 3300011606 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00754 Weill Cornell Medical College 3300011606 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.96 25577522 40019 10 0 24 0 SRX822720 0.0 Metagenome 3300045949 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - P1-R2-B DOE Joint Genome Institute (JGI) 3300045949 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.355 19.0438 536611631 1053803 211 34 363 48 Unrestricted 8.64 Metagenome 3300025212 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP1141 (SPAdes) DOE Joint Genome Institute (JGI) 3300025212 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -29.65 92.99 94789918 227747 133 1 234 3 SRX1982625 Unrestricted 0.0 Metagenome 3300006477 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2 of subject 158883629 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006477 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 127012939 183457 95 0 149 0 0.0 Metagenome 3300022889 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S096-311B-4 DOE Joint Genome Institute (JGI) 3300022889 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 152650067 429994 410 24 759 48 SRX4801279 Unrestricted 7.65 Metagenome 3300031585 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-40 DOE Joint Genome Institute (JGI) 3300031585 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh sediment 42.722 -70.847 654417262 1275335 475 1 790 6 SRX6458714 Unrestricted 10.15 Metagenome 3300041704 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_490 MetaG AgResearch, New Zealand, Mosgeil 3300041704 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1445996455 3172247 272 30 1166 54 0.0 Metagenome 3300000459 *Microbiome Permanent Draft Honey bee gut microbial communities from West Haven, Conneticut, USA Honey bee gut microbial communities from West Haven, Conneticut, USA - Frischia SCG AB-598-C04 Broad Institute 3300000459 Metagenome Analysis released per JGI data release policy No Yes philipp.engel@yale.edu Philipp Engel No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Honey bee gut 32.2743 -110.9388 1267858 3051 21 0 137 1 0.0 Metagenome 3300020197 *Microbiome Permanent Draft Freshwater microbial communities from Lake Tanganyika, Tanzania Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015037 Kigoma Deep Cast 65m DOE Joint Genome Institute (JGI) 3300020197 Metagenome Analysis spades v. 3.10.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater lake -4.9054 29.4853 1380338900 2497338 653 79 920 95 SRX4821665 Unrestricted 31.53 Metagenome 3300033747 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from gas well in Marcellus Shale, West Virginia, United States - MIP3H_02172016 Ohio State University 3300033747 Metagenome Analysis IDBA-UD v. 1.1.1 No Yes rebdaly@colostate.edu Rebecca Daly No Environmental Terrestrial Fracking water Deep subsurface Unclassified Fracking Water 39.6017 -79.9761 27943434 26885 3 0 3 0 0.0 Metagenome 3300022214 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_4_1 DOE Joint Genome Institute (JGI) 3300022214 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Sediment Marine Unclassified sediment 38.05 -121.934 856859634 1891749 825 33 1391 50 SRX4053754 Unrestricted 8.73 Metagenome 3300019702 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLT_3-4_MG DOE Joint Genome Institute (JGI) 3300019702 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 99020150 246346 209 17 382 26 Unrestricted 3.44 Metagenome 3300025778 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Jul07 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025778 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 125345196 273242 91 43 138 70 SRX2565524 Unrestricted 0.0 Metagenome 3300005985 *Microbiome Permanent Draft Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 DOE Joint Genome Institute (JGI) 3300005985 Metagenome Analysis SPADES v3.5.0 Released upon Christa's approval Yes Yes nnivanova@lbl.gov, NNIvanova@lbl.gov; filipagodoyvitorino@gmail.com; fgodoyvitorino@gmail.com Natasha Ivanova, Natalia Ivanova; Filipa Godoy-Vitorino; Filipa Godoy Vitorino No Host-associated Plants Rhizosphere Roots Unclassified Tabebuia heterophylla rhizosphere 18.402889 -66.050054 1054416962 1909746 725 43 1343 71 SRX2562477 0.0 Metagenome 3300000824 *Microbiome Permanent Draft Subaerial biofilm microbial communities from sulfidic caves, Italy, that are extremely acidic Subaerial biofilm microbial communities from sulfidic caves, Italy, that are extremely acidic - Ramo Sulfureo RS9 Pennsylvania State University 3300000824 Metagenome Analysis Public release - Daniel Jones (April 29, 2016) No Yes djones@psu.edu Daniel Jones No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Subaerial biofilm 43.398358 12.962139 6740218 12825 7 0 5 1 0.0 Metagenome 3300010261 *Microbiome Permanent Draft Animal gut microbial communities from fecal samples from Wisconsin, USA Ring-tailed lemur group fecal microbial communities from Wisconsin, USA - L1105 metagenome DOE Joint Genome Institute (JGI) 3300010261 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes apneumann2@wisc.edu Anthony Neumann No Host-associated Mammals Large intestine Digestive system Fecal Ring-tailed lemur group fecal 43.07 -89.4 151555493 261199 681 0 1184 0 SRX2505956 Unrestricted 0.0 Metagenome 3300029524 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005361-17 Beijing Genomics Institute (BGI) 3300029524 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 210473706 269716 143 0 169 0 0.0 Metagenome 3300002058 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Galicia, Spain - SR1-P2 J. Craig Venter Institute (JCVI) 3300002058 Metagenome Analysis Released per Alexandra J. Roth Schulze (April 1, 2016) No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface 42.52 -8.82 228606952 769106 56 14 180 24 0.0 Metagenome 3300045069 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-476 Genome Quebec 3300045069 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 54.077005 -125.757675 960543174 2189550 285 51 515 112 0.0 Metagenome 3300048516 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - Maria360 DOE Joint Genome Institute (JGI) 3300048516 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Sand Soil Desert sand -78.0648 163.7664 367633053 739670 276 13 472 18 Unrestricted 0.0 Metagenome 3300018021 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_150 DOE Joint Genome Institute (JGI) 3300018021 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 797099261 1467172 533 11 861 12 SRX3960481 Unrestricted 15.2 Metagenome 3300005586 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_12_30cm DOE Joint Genome Institute (JGI) 3300005586 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2320550460 6992991 1870 39 3249 69 SRX2727816 Unrestricted 0.0 Metagenome 3300053736 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 endosphere DOE Joint Genome Institute (JGI) 3300053736 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.587648 -123.193914 228266959 437770 93 51 119 82 Unrestricted 25.89 Metagenome 3300042087 *Microbiome Permanent Draft Sediment microbial communities from Haima cold seep, South China Sea, China Sediment microbial communities from Haima cold seep, South China Sea, China - SY70.4.8_HM2C Shanghai Majorbio Bio-pharm Technology Co. 3300042087 Metagenome Analysis IDBA v. 1.1.3 released by JGI data releasing policy No Yes sulei@tongji.edu.cn Lei Su No Environmental Aquatic Cold seeps Marine Sediment Sediment 16.729915 110.473367 .16 to .18 402944679 479018 104 2 126 1 0.0 Metagenome 3300028855 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N1_4 DOE Joint Genome Institute (JGI) 3300028855 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 369247147 954664 218 22 378 21 SRX5356657 Unrestricted 0.0 Metagenome 3300050150 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D10_RHK1_4_to_RHK1 DOE Joint Genome Institute (JGI) 3300050150 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.154 -124.211 587173639 920618 282 87 453 130 Unrestricted 17.6 Metagenome 3300044492 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 052-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044492 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9208 -106.9508 732422037 1776429 572 25 1001 40 Unrestricted 8.34 Metagenome 3300012650 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100677 University of Pennsylvania 3300012650 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 28727599 63760 21 3 31 6 SRX756417 0.0 Metagenome 3300031986 *Microbiome Permanent Draft Microbial communities from the deep biosphere Freshwater microbial communities in the subglacial waters of the Vatnajokull ice cap, Iceland - Enr re-assembly Marine Biological Laboratory 3300031986 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet Yes 22975882 Environmental Aquatic Subglacial lake Freshwater Unclassified Freshwater 64.48702 -17.50583 69716342 123246 45 0 77 2 0.0 Metagenome 7000000389 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160319967 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000389 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 80181244 153124 0 0 0 0 0.0 Metagenome 3300027380 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Lake water microbial communities from Ohio, USA - Utica-2 Time Series LW 2014_7_11 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027380 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Lake Freshwater Unclassified Lake water 40.178 -81.073 0 194959502 478847 173 46 312 63 SRX2925262 Unrestricted 0.0 Metagenome 3300069360 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_021-M-20170619-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069360 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 4805523 15197 45 4 76 6 0.0 Metagenome 3300048915 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 DOE Joint Genome Institute (JGI) 3300048915 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Rhizoplane Roots Unclassified Rhizoplane soil 42.40581 -85.40228 2241637436 3619445 659 41 1033 61 Unrestricted 14.47 Metagenome 3300025141 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025141 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 18.92 -104.89 725244457 1557555 4 0 5 0 SRX2557420 Unrestricted 0.0 Metagenome 3300046722 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 soil DOE Joint Genome Institute (JGI) 3300046722 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.587593 -123.193547 6.69 1115544329 1743651 317 11 513 21 Unrestricted 13.61 Metagenome 3300025867 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW1_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025867 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 35.92 139.63 804659355 1483826 608 6 965 12 SRX2157902 Unrestricted 0.0 Metagenome 3300040609 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_015-O-20160830-COMP-DNA1 Battelle Memorial Institute 3300040609 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 1604553 4582 21 12 36 12 0.0 Metagenome 3300048048 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - N.F.S.T-18 (version 2) DOE Joint Genome Institute (JGI) 3300048048 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3533 19.0466 181997485 354777 246 12 421 11 Restricted 0.0 Metagenome 3300049606 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA14 DOE Joint Genome Institute (JGI) 3300049606 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 424421391 1124900 450 6 851 6 Unrestricted 7.28 Metagenome 3300026038 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleC_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026038 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.052509 -121.76873 54284679 149884 190 8 326 9 SRX7182404 Unrestricted 0.0 Metagenome 3300042949 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-442 Genome Quebec 3300042949 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 52.003037 -108.784517 1022044896 2404588 426 57 682 78 0.0 Metagenome 3300022212 *Microbiome Permanent Draft Anaerobic microbial community of wastewater bioreactor in Changsha, Hunan, China Activated sludge microbial communities from anaerobic bioreactor in Hunan University, Changsha, China - 10 Beijing Novogene Bioinformatics Technology Co., Ltd 3300022212 Metagenome Analysis IDBA v.1.1.1 released by JGI data releasing policy No Yes yuezheng@uw.edu Yue Zheng No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 28.2127 113.0106 450396222 812256 531 3 806 5 0.0 Metagenome 3300019704 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BLT_0-1_MG DOE Joint Genome Institute (JGI) 3300019704 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 101631371 244703 195 29 381 53 SRX3983243 Unrestricted 3.96 Metagenome 3300025889 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025889 Metagenome Analysis spades v. 3.11.1 Yes Yes chenf@umces.edu; bcampb7@clemson.edu Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.12 -75.25 806002720 1809548 1 0 1 0 SRX2838765 Unrestricted 0.0 Metagenome 3300064819 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 681 in Dapp, Alberta, Canada - S00JY_0212 Microbiome Insights 3300064819 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 54.22361285 -113.5355333 49741281 76076 60 3 106 4 0.0 Metagenome 3300000822 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 28MAY2007 hypolimnion v5 (version 7) DOE Joint Genome Institute (JGI) 3300000822 Metagenome Analysis released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 2078374 2046 0 0 0 0 Unrestricted 0.0 Metagenome 2070309003 *Microbiome Permanent Draft Concrete drainage pipe biofilm microbial communities from Ohio, US Concrete drainage pipe biofilm microbial communities from Ohio, US - sample 12383, Newbler assembly 454 Life Sciences 2070309003 Metagenome Analysis Newbler released per JGI data release policy No Yes matlib.robin@epamail.epa.gov Robin Matlib No Environmental Aquatic Storm water Freshwater Drainage pipe biofilm Concrete drainage pipe biofilm 39.8 -84.3 77842783 181911 97 0 142 0 0.0 Metagenome 3300051373 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - ATCR1D-14 DOE Joint Genome Institute (JGI) 3300051373 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 172851658 304823 216 19 291 21 Unrestricted 66.46 Metagenome 3300025214 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0371 (SPAdes) DOE Joint Genome Institute (JGI) 3300025214 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -15.83 -33.41 66258099 145670 104 27 147 37 SRX1983247 Unrestricted 0.0 Metagenome 3300045409 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-539 Genome Quebec 3300045409 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 53.95755 -124.191784 1167438569 2710883 373 44 604 97 0.0 Metagenome 3300038730 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - WLA3 Michigan State University 3300038730 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 33.72215 -118.2662 24667202 68493 0 0 2 0 0.0 Metagenome 3300002985 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Louisiana-East Texas, USA - DC3-131 DOE Joint Genome Institute (JGI) 3300002985 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 4254905 13608 46 3 34 5 SRX2770437 Unrestricted 0.0 Metagenome 7000000016 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2 of subject 158802708 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000016 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 58966414 104667 0 0 0 0 0.0 Metagenome 3300022778 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA7 Version 2 University of New South Wales 3300022778 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au; z5119396@unsw.edu.au Holly Bennett; Viet Hung Nguyen No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 37740929 56454 36 6 56 6 0.0 Metagenome 3300040415 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 056_R1_022417 University of Maryland 3300040415 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 61.01368333 25.68161944 4822915 11913 15 3 27 3 0.0 Metagenome 3300005058 *Microbiome Permanent Draft Down-flow hanging sponge reactor microbial communities from the University of Illinois at Urbana-Champaign, USA Co-DHS sludge microbial communities from Urbana, Illinois, USA University of Illinois, Urbana-Champaign 3300005058 Metagenome Analysis Newbler released per JGI data release policy No Yes nkim41@illinois.edu Kim, Na Kyung Kim No Engineered Bioreactor Sludge DHS reactor Unclassified Down-flow hanging sponge reactor 40.114056 -88.226756 440549816 429513 93 15 144 10 0.0 Metagenome 3300042069 *Microbiome Permanent Draft Forest and sugarcane field soil microbial communities from Santa Rita do Passa , Quatro, Sao Paulo, Brazil Soil microbial communities from sugarcane field in Santa Rita do Passa , Quatro, Sao Paulo, Brazil - SUG-D_2 UNESP-FCAV 3300042069 Metagenome Analysis Custom JGI assembly. Yes Yes No Environmental Terrestrial Unclassified Soil Agricultural land Soil -21.708519 -47.582469 11817655 32163 28 0 45 0 SRX9176014 0.0 Metagenome 7000000367 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 638754422 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000367 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 97089439 178326 0 0 0 0 0.0 Metagenome 3300029522 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI012170-74 Beijing Genomics Institute (BGI) 3300029522 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 173160368 256042 135 0 224 0 0.0 Metagenome 3300008017 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-07 DOE Joint Genome Institute (JGI) 3300008017 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 570249382 1034250 535 41 869 46 SRX3197919 Unrestricted 0.0 Metagenome 3300071148 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone National Park, Wyoming, USA - YELL_012-M-20190822-COMP-DNA1 3300071148 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 15673520 49928 58 5 123 6 0.0 Metagenome 3300035410 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 DOE Joint Genome Institute (JGI) 3300035410 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1125 -122.987 1062104933 2508489 615 62 1169 97 SRX8287888 Unrestricted 7.36 Metagenome 3300042191 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_051817_130_140_jgi DOE Joint Genome Institute (JGI) 3300042191 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2817987724 4658362 824 12 1366 22 Unrestricted 11.96 Metagenome 3300024222 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK32 DOE Joint Genome Institute (JGI) 3300024222 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 174291145 412469 214 14 398 33 SRX4547582 Unrestricted 8.81 Metagenome 3300000165 *Microbiome Permanent Draft Delisea pulchra's surface microbial communities from Botany Bay, Sydney, Australia Delisea pulchra's surface microbial communities from Botany Bay, Sydney, Australia - BBAY59_SOAP_k21_Abyss_k55_GAA J. Craig Venter Institute 3300000165 Metagenome Analysis Assembled with SOAPdenovo and Abyss separately and then joined with GAA released per JGI data release policy No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Red algae Unclassified Delisea pulchra's surface -33.991017 151.232433 465053456 965027 0 0 0 0 0.0 Metagenome 3300013853 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00948 Weill Cornell Medical College 3300013853 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.69 -73.91 19282287 27433 7 0 15 0 SRX822910 0.0 Metagenome 3300033569 *Microbiome Permanent Draft Columbia Riverbed POM Degredation Experiment Lab enriched sediment microbial communities from the Columbia River near Richland, WA, USA - CRF-POM O2 University of Wisconsin, Madison 3300033569 Metagenome Analysis Metaspades v. 3.13.0 released by JGI data releasing policy Yes Yes nstern2@wisc.edu Noah Stern No Environmental Aquatic Sediment Freshwater Unclassified Sediment 46.28045 -119.27368 1568106385 3460251 584 10 882 17 0.0 Metagenome 3300050332 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Kansas, USA - king_2019_sed_WHONDRS-S19S_0016 DOE Joint Genome Institute (JGI) 3300050332 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 39.10445 -96.6025 714122501 1822293 898 12 1761 21 Restricted 15.95 Metagenome 3300017975 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG DOE Joint Genome Institute (JGI) 3300017975 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 4.0627 -73.195 2535803177 5283288 1628 28 2736 48 SRX3936924 Unrestricted 5.9 Metagenome 3300038414 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - FS5_t0 DOE Joint Genome Institute (JGI) 3300038414 Metagenome Analysis metaspades v. 3.13.0 Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.5324 -110.7974 227892155 372650 122 1 158 1 SRX9402871 Unrestricted 177.58 Metagenome 3300002746 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK07-C DOE Joint Genome Institute (JGI) 3300002746 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.43 -89.41 54212 156 12 4 22 9 SRX1991353 Unrestricted 0.0 Metagenome 3300025033 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-09 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025033 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 645252847 1130854 525 33 797 47 SRX3198099 Unrestricted 0.0 Metagenome 3300027564 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Olavius algarvensis symbiont microbial communities from Tuscany, Italy - Type G ELBA extract 1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027564 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 42.8072 10.1411 650476005 749076 8 2 7 6 SRX2554372 Unrestricted 0.0 Metagenome 3300024444 *Microbiome Permanent Draft Vaginal microbial communities from lab mice Vaginal microbial communities from healthy lab mice, Madrid, Spain - G2-S16 treatment B1, day 1 Polytechnic University of Valencia 3300024444 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Vagina Reproductive system Unclassified mice vagina 40.4191094 -3.6725753 586364 954 0 0 0 0 0.0 Metagenome 3300037551 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 E2 20-24 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037551 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0468 633520324 1404943 487 4 888 11 SRX4415323, SRX8657961 Unrestricted 0.0 Metagenome 3300024902 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 121_LOW14 (SPAdes) DOE Joint Genome Institute (JGI) 3300024902 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 30180249 45941 15 0 18 0 SRX2721240 Unrestricted 0.0 Metagenome 3300034375 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4) (version 4) DOE Joint Genome Institute (JGI) 3300034375 Metagenome Analysis metaspades v. 3.13.0 Yes Yes chenf@umces.edu; bcampb7@clemson.edu Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.130153 -75.249887 491734114 932005 51 2 65 6 SRX2745131, SRX3785818, SRX3785817 Unrestricted 0.0 Metagenome 3300069584 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Abby Road, Pacific Northwest, WA, USA - ABBY_004-M-20170605-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069584 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.76243 -122.33033 35747718 110937 83 18 187 19 0.0 Metagenome 3300028210 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS378 with 3.0UM filter - spades JGI facility at Oak Ridge National Laboratory 3300028210 Metagenome Analysis Spades v. 3.11.1 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 12869036 23461 9 1 11 1 0.0 Metagenome 3300014873 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200B_16_10D DOE Joint Genome Institute (JGI) 3300014873 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9224 -106.9518 212130595 495130 287 9 582 23 SRX3780467 Unrestricted 4.78 Metagenome 3300000118 *Microbiome Draft Marine microbial communities from chronically polluted sediments in four geographic locations Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site OR sample ARG 06_12.3m v1 DOE Joint Genome Institute (JGI) 3300000118 Metagenome Analysis released based on JGI ITS Yes Yes hdionisi@cenpat.edu.ar Hebe Dionisi Yes 28702706 Environmental Aquatic Intertidal zone Marine Sediment Marine -54.80407 -68.288208 65605680 188499 170 25 324 28 Unrestricted 0.0 Metagenome 3300031896 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19 DOE Joint Genome Institute (JGI) 3300031896 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1942660524 4855743 551 9 888 13 SRX5820227 Unrestricted 15.41 Metagenome 3300027231 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1552A-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027231 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.1869 -123.8842 158920312 318873 160 10 234 16 SRX2753728 Unrestricted 20.23 Metagenome 3300046663 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere DOE Joint Genome Institute (JGI) 3300046663 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1215 -123.2712 1248369878 2029423 419 133 666 165 Unrestricted 13.42 Metagenome 3300055010 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_140122.NP1 DOE Joint Genome Institute (JGI) 3300055010 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 1142031254 2538341 640 122 1079 190 Restricted 0.0 Metagenome 3300012954 *Microbiome Permanent Draft Marine microbial communities from the Costa Rica Dome and surrounding waters Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG DOE Joint Genome Institute (JGI) 3300012954 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes msaito@whoi.edu Mak Saito No Environmental Aquatic Oceanic Marine Photic zone surface seawater 0.8736 -97.0511 4274994468 9545890 2778 1022 4623 1584 SRX3375295 Unrestricted 0.0 Metagenome 3300025999 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_201 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025999 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 30148802 90247 110 2 177 5 SRX2564939, SRX2581048 Unrestricted 0.0 Metagenome 3300011573 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00628 Weill Cornell Medical College 3300011573 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.83 -73.93 26626347 36751 27 0 32 0 SRX822595 0.0 Metagenome 3300031745 *Microbiome Permanent Draft Soil microbial communities Soil bacterial communities from Elfin Forest Preserve, Escondido, CA, USA - EC Illumina 3300031745 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Loam Soil Forest soil Soil 33.086939 -117.145323 1202393462 4351575 791 59 1565 97 0.0 Metagenome 3300002895 *Microbiome Permanent Draft Iron-reducing enrichment culture microbial communities from Chocolate Pots hot spring, Yellowstone National Park, Wyoming, USA Midway enrichment cultures of iron-reducing bacteria from Chocolate Pots hot spring, Yellowstone National Park University of Wisconsin, Madison 3300002895 Metagenome Analysis released by Nathaniel Fortney Yes Yes nwfortney@gmail.com, eroden@geology.wisc.edu Nathaniel Fortney, Eric Roden No Environmental Aquatic Hot (42-90C) Thermal springs Neutral Iron-reducing enrichment culture 44.71538 -110.73627 7.8 86008788 146024 75 0 116 1 0.0 Metagenome 3300040147 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 071B_R1 University of Maryland 3300040147 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.58746 19.03558 10246563 19262 38 5 63 6 0.0 Metagenome 3300009635 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_11_10 DOE Joint Genome Institute (JGI) 3300009635 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 307498014 606496 217 19 395 22 SRX3003282 Unrestricted 0.0 Metagenome 3300060652 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_005-M-20210726-comp-1 DOE Joint Genome Institute (JGI) 3300060652 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 40.043663 -105.569904 1624183217 2828150 424 162 754 231 Unrestricted 17.37 Metagenome 3300002277 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002277 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 17054743 47465 34 1 54 0 SRX1989916 Unrestricted 0.0 Metagenome 3300043593 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 115-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043593 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9874 -107.0039 210537454 584341 328 30 616 33 Unrestricted 9.1 Metagenome 3300007858 *Microbiome Permanent Draft Lichen Metagenomics Project Crustose type lichen communities on tree bark from the forest in Ratan Mahal, India - RM06 Biogene, Gujarat Biodiversity Gene Bank 3300007858 Metagenome Analysis SPAdes 3.6.2 released per JGI data release policy No Yes apurvapunvar@yahoo.com Apurva Punvar No Host-associated Fungi Unclassified Lichen Unclassified Growing on tree bark 22.56985 74.13424 99426191 598618 1046 1500 1322 2065 0.0 Metagenome 3300039689 *Microbiome Permanent Draft Glacier soil microbial communities from Mackay Glacier, Antarctica Glacier soil microbial communities from Mackay Glacier, Antarctica - MG6-4 University of Pretoria 3300039689 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Terrestrial Glacier Soil Unclassified Glacier soil -76.822 162.104 50368700 100629 22 1 49 1 0.0 Metagenome 3300008754 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human palatine tonsils microbial communities from NIH, USA - visit 2, subject 763496533 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008754 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Tonsils Lymphatic system Palatine/Faucial Human 39.0042816 -77.1012173 117380557 155196 87 0 94 0 SRX024898 0.0 Metagenome 3300024308 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-FT3-sol DOE Joint Genome Institute (JGI) 3300024308 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified deep subsurface sediment 35.7 -98.594 200826213 316440 102 2 111 2 SRX4549811 Unrestricted 31.61 Metagenome 3300015193 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream) University of Bristol 3300015193 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.872223 16.713705 5.7 213265070 487379 178 6 289 7 0.0 Metagenome 3300027089 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF015 (SPAdes) DOE Joint Genome Institute (JGI) 3300027089 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 38972373 105425 31 2 49 5 SRX2014323 Unrestricted 0.0 Metagenome 7000000080 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 158256496 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000080 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2245909 2483 0 0 0 0 0.0 Metagenome 3300028072 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK16 DOE Joint Genome Institute (JGI) 3300028072 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 168883360 445936 288 27 523 32 SRX5245458 Unrestricted 8.23 Metagenome 3300052274 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Colorado, USA - CP_C2_S1 DOE Joint Genome Institute (JGI) 3300052274 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 39.93805 -105.9615 132647868 250414 265 55 526 83 Unrestricted 21.94 Metagenome 3300045744 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - COC2S DOE Joint Genome Institute (JGI) 3300045744 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 1113606496 1944187 515 28 994 32 Unrestricted 14.97 Metagenome 3300027067 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF007 (SPAdes) DOE Joint Genome Institute (JGI) 3300027067 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 78879878 207913 46 13 73 25 SRX2014319 Unrestricted 0.0 Metagenome 3300018066 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1 DOE Joint Genome Institute (JGI) 3300018066 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 444336969 1068493 623 14 1279 24 SRX3939289 Unrestricted 5.57 Metagenome 3300042360 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME28Jun2011-rr0810 DOE Joint Genome Institute (JGI) 3300042360 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 392665022 632784 168 43 226 45 Unrestricted 21.56 Metagenome 3300042742 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T2_25-Nov-14 NMDC pilot DOE Joint Genome Institute (JGI) 3300042742 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 33088752 91916 128 20 227 30 SRX2838882 0.0 Metagenome 2046860005 *Microbiome Permanent Draft Freshwater sediment microbial communities from Lake Washington, Seattle, USA, for methane and nitrogen cycles Sediment microbial communities from Lake Washington, Seattle, for Methane and Nitrogen Cycles, sample from SIP 13C-methane aerobic no nitrate additional fraction DOE Joint Genome Institute (JGI) 2046860005 Metagenome Analysis Newbler released based on JGI ITS No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova Yes 23638358 Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.07 -122.27889 58805457 157525 40 0 60 0 Unrestricted 0.0 Metagenome 3300031910 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031910 Metagenome Analysis spades v. 3.13.0 Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Unclassified Soil 18.321 -65.8172 4401919585 9129410 1124 20 1899 29 SRX5313694, SRX3604229 Unrestricted 0.0 Metagenome 3300027316 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F01 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027316 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 61319591 70567 79 0 61 0 SRX3195088 Unrestricted 0.0 Metagenome 3300018946 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - mid-late stage, 0 min after wetting v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018946 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 494559904 971102 394 29 713 42 0.0 Metagenome 3300027947 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N3_40_50 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027947 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37379502 -119.2722385 112996545 328279 194 3 367 7 SRX2522696 Unrestricted 0.0 Metagenome 7000000104 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765034022 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000104 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 54813094 97304 0 0 0 0 0.0 Metagenome 3300030686 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from healthy individual in Houston, USA - MG100172 University of Michigan 3300030686 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 29.76 -95.37 27852423 50220 40 0 73 0 0.0 Metagenome 3300015358 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG DOE Joint Genome Institute (JGI) 3300015358 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 861210463 1978730 580 25 1128 28 SRX3048035 Unrestricted 0.0 Metagenome 3300043119 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Shale gas microbial communities from Fort St. John, British Columbia, Canada - UGR 1-1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043119 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back shale gas 56.0 -122.0 208792468 385390 159 39 250 68 SRX8356733 Unrestricted 41.53 Metagenome 3300005510 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45 DOE Joint Genome Institute (JGI) 3300005510 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 809655950 2062389 823 58 1378 88 SRX2781556 Unrestricted 0.0 Metagenome 3300044230 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T72 S DOE Joint Genome Institute (JGI) 3300044230 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7588 -64.3326 304519412 752937 18 3 28 12 Unrestricted 80.63 Metagenome 3300009440 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512 DOE Joint Genome Institute (JGI) 3300009440 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 27054497, 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 668734330 1238170 642 131 939 201 SRX2999683 Unrestricted 0.0 Metagenome 3300036855 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in California, United States - CAC_4 DOE Joint Genome Institute (JGI) 3300036855 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil 35.5 -121.0 1699494293 2781819 491 81 805 105 SRX8386054 Unrestricted 12.16 Metagenome 3300007260 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 765337473 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007260 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 3796061 10090 6 0 15 0 SRX024872 0.0 Metagenome 7000000523 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human palatine tonsils microbial communities from NIH, USA - visit 2, subject 763496533 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000523 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Tonsils Lymphatic system Palatine/Faucial Human 39.0042816 -77.1012173 91718760 160174 0 0 0 0 SRX024898 0.0 Metagenome 3300008514 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160765029 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008514 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 109748450 152578 80 0 120 0 0.0 Metagenome 3300013251 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100310 University of Pennsylvania 3300013251 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 43351542 87494 23 0 37 0 SRX756591 0.0 Metagenome 3300003469 *Microbiome Permanent Draft Air microbial communities from Cairo, Egypt Air microbial communities from Cairo, Egypt - Sample from the Khamsin wind - New Cairo 3300003469 Metagenome Analysis released by JGI data releasing policy No Yes s.elgogary@aucegypt.edu Sawsan El Gogary, Sawsan ElGogary No Environmental Air Unclassified Outdoor Air Unclassified Air 30.02 31.5 0 0 0 0 0 0 0.0 Metagenome 2236876008 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Marine microbial communities from Columbia River, CM, sample from Cape Meares, GS311-3LG-Deep1200 University of South Carolina 2236876008 Metagenome Analysis No Yes mariyasmit@hotmail.com Mariya Smit, Mariya W. Smit No Environmental Aquatic Intertidal zone Marine Unclassified Marine estuarine 45.483 -124.918 221436501 573344 185 420 427 837 0.0 Metagenome 2038011000 *Microbiome Permanent Draft Fungus garden microbial communities from leaf-cutting ants in Gamboa, Panama Fungus garden microbial communities from Atta colombica in Panama - from dump top 454 Life Sciences, DOE Joint Genome Institute (JGI) 2038011000 Metagenome Analysis Newbler No Yes gsuen@wisc.edu Garret Suen Yes 20885794 Environmental Terrestrial Insects nest Nest Fungus garden/Fungus gallery Fungus garden 9.1167 -79.7 465469652 1292128 151 0 327 0 0.0 Metagenome 3300055086 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_1-s30 day 245 DOE Joint Genome Institute (JGI) 3300055086 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1636055964 2338064 279 186 355 226 Unrestricted 37.82 Metagenome 3300001706 *Microbiome Permanent Draft Marine sediment microbial communities from White Oak River estuary, North Carolina Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-3-8_10 DOE Joint Genome Institute (JGI) 3300001706 Metagenome Analysis Yes Yes acidophile@gmail.com Brett Baker No Environmental Aquatic Intertidal zone Marine Estuary: Microbial mat Marine sediment 34.640199 -77.109447 101540249 271677 168 2 286 0 SRX2554352 Unrestricted 0.0 Metagenome 3300070455 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_043-M-20210525-COMP-DNA1 3300070455 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 59081 211 4 0 9 0 0.0 Metagenome 3300056713 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.4C.12 SIP fraction DOE Joint Genome Institute (JGI) 3300056713 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 237632797 410533 221 34 360 59 Unrestricted 14.74 Metagenome 3300009602 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231 DOE Joint Genome Institute (JGI) 3300009602 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 38.48 10.16 349249003 645932 241 0 375 0 SRX2753802 Unrestricted 0.0 Metagenome 3300014271 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D2 DOE Joint Genome Institute (JGI) 3300014271 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jzz0026@lbl.gov; sgtringe@lbl.gov Jinglie Zhou; Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.049904 -121.765358 454188530 1041167 372 2 718 1 SRX7182420 Unrestricted 0.0 Metagenome 3300013460 *Microbiome Permanent Draft Insectivorous bat viral communities from France Insectivorous bat viral communities from France - b9 Institut Pasteur, Paris, France 3300013460 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Multiple organs Multiple systems Pooled tissues Bat tissue 46.0917726 1.9889977 10229956 18219 14 7 28 13 SRX590197 0.0 Metagenome 3300027833 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027833 Metagenome Analysis spades v. 3.11.1 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 69.2303 7.7302 1407588760 2568353 500 462 534 715 SRX2997872 Unrestricted 0.0 Metagenome 3300055558 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.17C.12 SIP fraction DOE Joint Genome Institute (JGI) 3300055558 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 194961150 356836 146 27 225 31 Unrestricted 18.91 Metagenome 3300049454 *Microbiome Permanent Draft Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA - 3_s_oct_JRB_CZO DOE Joint Genome Institute (JGI) 3300049454 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dawsonfairbanks@email.arizona.edu Dawson Fairbanks No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.882743 -105.537439 907869022 1640260 329 7 600 7 Unrestricted 17.55 Metagenome 3300049829 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Maryland, USA - muddycreek_2019_sed_WHONDRS-S19S_0082 DOE Joint Genome Institute (JGI) 3300049829 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 38.8748619 -76.5465418 1280748223 2836732 1414 1 2713 0 Unrestricted 11.22 Metagenome 3300013182 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100367 University of Pennsylvania 3300013182 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 95805534 225278 138 17 273 56 SRX756290 0.0 Metagenome 3300047377 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_170823.NP2 DOE Joint Genome Institute (JGI) 3300047377 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 712101431 1444005 388 76 600 135 Unrestricted 13.64 Metagenome 3300026730 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A5-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300026730 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 17719300 61978 74 4 123 8 SRX1991125 Unrestricted 0.0 Metagenome 3300050305 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_67 DOE Joint Genome Institute (JGI) 3300050305 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.598 161.007 580297172 924350 189 27 234 47 SRX18236985 Restricted 28.88 Metagenome 3300011452 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00594 Weill Cornell Medical College 3300011452 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.72 -73.99 14462736 16800 7 0 13 0 SRX822561 0.0 Metagenome 3300006726 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from Cariaco Basin, Caribbean Sea - 28_WHOI_OMZ DOE Joint Genome Institute (JGI) 3300006726 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 10.847 -65.114 34402341 45303 51 5 108 9 SRX2929443 Unrestricted 0.0 Metagenome 3300022794 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S2 Version 2 University of New South Wales 3300022794 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 53015199 88528 17 10 10 16 0.0 Metagenome 3300042584 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A15 University of California, Davis 3300042584 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 260970724 736294 330 11 630 17 0.0 Metagenome 3300024935 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 116_HOW13 (SPAdes) DOE Joint Genome Institute (JGI) 3300024935 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 65757144 92758 31 0 42 0 SRX2721193 Unrestricted 0.0 Metagenome 3300040263 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 046B_R1 University of Maryland 3300040263 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 61.00563056 25.65590833 7798136 14172 18 0 22 3 0.0 Metagenome 3300045582 *Microbiome Permanent Draft Forest soil microbial communities from boreal-temperate forests in Minnesota, USA Forest soil microbial communities from Hubachek Wilderness Research Center, Ely, Minnesota, USA - Ely AMB WO L3 DOE Joint Genome Institute (JGI) 3300045582 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pankaj.trivedi@colostate.edu Pankaj Trivedi No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 47.55 -92.3 511064921 867987 213 13 381 16 Unrestricted 16.93 Metagenome 3300025792 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025792 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.05246563 -121.76914021 175564326 358697 196 1 337 0 SRX7142754 Unrestricted 0.0 Metagenome 3300005750 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS851 Marine Biological Laboratory 3300005750 Metagenome Analysis Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow diffuse flow hydrothermal vent 18.547192 -81.71817 6.98 9116160 11747 2 0 5 0 0.0 Metagenome 3300001157 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_O2 DOE Joint Genome Institute (JGI) 3300001157 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 25993306 64481 134 48 248 65 SRX3311919 Unrestricted 0.0 Metagenome 3300021499 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-10-11_MG DOE Joint Genome Institute (JGI) 3300021499 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.0114 -110.5956 144358644 327090 169 1 304 1 SRX3982280 Unrestricted 13.82 Metagenome 3300032093 *Microbiome Permanent Draft Freshwater fungal communities from various locations Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117 DOE Joint Genome Institute (JGI) 3300032093 Metagenome Analysis spades v. 3.12.0 Yes Yes tyjames@umich.edu Timothy Y. James No Environmental Aquatic Lake Freshwater Lake biofilm freshwater 41.6898 -83.2813 2758240058 5395004 975 245 1384 378 SRX6420480 Unrestricted 23.5 Metagenome 3300003487 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_1000_biof DOE Joint Genome Institute (JGI) 3300003487 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 216843443 345451 104 25 191 53 SRX2867382, SRX2867383 Unrestricted 0.0 Metagenome 3300022456 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Lake Baghdad, Rottnest Island (WA - Australia) - LBBM2 JM110 AGRF 3300022456 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.994794 115.523776 51754750 95407 45 3 67 4 0.0 Metagenome 3300023052 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-205 DOE Joint Genome Institute (JGI) 3300023052 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Unclassified Plant litter Unclassified leaf litter 40.2526 -123.026 135282213 264035 39 43 39 62 SRX4392059 Unrestricted 38.26 Metagenome 3300003090 *Microbiome Permanent Draft Hot spring microbial communities from Five Geothermal Springs in Yellowstone National Park, USA Hot spring microbial communities from Five Geothermal Springs in Yellowstone National Park, USA - Calcite Springs-Scary Spring J. Craig Venter Institute 3300003090 Metagenome Analysis Made public because these are downloaded from Genbank No Yes Rusch, D No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.907703 -110.394845 7.8 3750619 5120 2 0 3 0 0.0 Metagenome 3300009141 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1550A-3 DOE Joint Genome Institute (JGI) 3300009141 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2328 -123.878 271789709 533566 420 163 636 254 SRX2753720 Unrestricted 0.0 Metagenome 3300054106 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_11_150 re-annotation DOE Joint Genome Institute (JGI) 3300054106 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 390100288 731090 237 4 395 6 SRX3003643 0.0 Metagenome 3300000886 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-65cm-3A)- 1 week illumina University of Tennessee 3300000886 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 244274742 986766 795 44 1387 74 0.0 Metagenome 3300026240 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from above oceans and continental USA - SDPR-002 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026240 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 9750819 24346 11 1 17 9 Unrestricted 0.0 Metagenome 3300070844 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_042-O-20170719-COMP-DNA1 3300070844 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 72618960 205551 85 3 194 11 0.0 Metagenome 3300003774 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus exumae BAHAMAS.3 DOE Joint Genome Institute (JGI) 3300003774 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 420579411 990529 5 4 7 11 SRX3340328 Unrestricted 0.0 Metagenome 3300049796 *Microbiome Permanent Draft Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA - 4_d_oct_JRB_CZO DOE Joint Genome Institute (JGI) 3300049796 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dawsonfairbanks@email.arizona.edu Dawson Fairbanks No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.8832033 -106.53744 1097505719 1814300 370 6 652 10 Unrestricted 13.77 Metagenome 3300029586 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 063_3_9_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029586 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 210012247 291976 236 1 322 0 0.0 Metagenome 3300012834 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched millipede-associated microbial communities from UW Madison campus, WI, USA - HID1971I_E6 MG DOE Joint Genome Institute (JGI) 3300012834 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 95947169 128729 97 0 133 0 SRX3564631 Unrestricted 0.0 Metagenome 3300013099 *Microbiome Permanent Draft Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay6, Core 4569-2, 0-3 cm DOE Joint Genome Institute (JGI) 3300013099 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nd.microbiota@gmail.com Nina Dombrowski Yes 30479325 Environmental Aquatic Hydrothermal vents Marine Sediment marine sediment 27.0151 -111.3798 2590923714 5198976 1707 30 3020 50 SRX3568727 Unrestricted 7.28 Metagenome 3300033401 *Microbiome Permanent Draft Metagenomic SGS 2x251 Riparian soil bacterial communities from Cottonwood Creek Park, Encinitas, CA, USA - R3 Illumina 3300033401 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Riparian soil Soil 33.051604 -117.289363 1413033648 3925334 794 35 1244 77 0.0 Metagenome 3300036902 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 P2 10-14 DOE Joint Genome Institute (JGI) 3300036902 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0472 597565727 1114529 209 6 326 18 SRX8138496 Unrestricted 9.73 Metagenome 3300026375 *Microbiome Permanent Draft Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 CS6 DOE Joint Genome Institute (JGI) 3300026375 Metagenome Analysis spades v. 3.11.1 Yes Yes ccraft@indiana.edu Chris Craft No Environmental Aquatic Wetlands Freshwater Sediment sediment 31.3377 -81.4644 141094309 403258 364 6 667 10 SRX4796514 Unrestricted 6.49 Metagenome 3300036444 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Nostoc desertorum CM1-VF14 and co-occurring heterotrophs from soil from Clark Mountains, San Bernardino, California, United States - 20190125_33 DOE Joint Genome Institute (JGI) 3300036444 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.635 -115.5124 101206395 102994 37 0 32 0 SRX8848785 Unrestricted 159.13 Metagenome 3300006899 *Microbiome Permanent Draft Marine and wastewater microbial communities from Korea, with extracellular vesicles Wastewater microbial communities from Nanji, Korea with extracellular vesicles - Nanji-0.2um Chunlab, Inc 3300006899 Metagenome Analysis IDBA-1.1.1 released per JGI data release policy No Yes s-jkim@kiost.ac Sang-Jin Kim No Engineered Wastewater Unclassified Unclassified Unclassified Wastewater 37.3132 126.828 260452717 600496 526 9 776 17 0.0 Metagenome 3300041692 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_45 MetaG AgResearch, New Zealand, Mosgeil 3300041692 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1397734740 3057608 292 36 1206 74 0.0 Metagenome 3300002524 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C49A8_35 DOE Joint Genome Institute (JGI) 3300002524 Metagenome Analysis Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 52767936 126395 142 21 242 34 SRX1990963 Unrestricted 0.0 Metagenome 3300037346 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Watts Lake #994 DOE Joint Genome Institute (JGI) 3300037346 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.606 78.2217 403264879 756300 342 25 510 48 SRX9378918 Unrestricted 23.01 Metagenome 3300031922 *Microbiome Permanent Draft Microbial communities from the deep biosphere Spring water microbial communities from the Voltri Massif travertine in Liguria, Italy - LIG_GOR1CDEF_2013 re-assembly The Marine Biological Laboratory 3300031922 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Alkaline Non-marine Saline and Alkaline Unclassified Spring water 44.597 8.7833 244465973 593398 201 13 396 27 SRX748866, SRX1055340, SRX1055346 0.0 Metagenome 3300029058 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 268_M Beijing Genomics Institute (BGI) 3300029058 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 189266659 245753 179 0 259 0 ERX491048 0.0 Metagenome 3300019880 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - H3a1 DOE Joint Genome Institute (JGI) 3300019880 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9827 -107.0102 241108753 544450 260 9 508 12 SRX3944905, SRX3944906 Unrestricted 0.0 Metagenome 3300014066 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00780 Weill Cornell Medical College 3300014066 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.98 23912982 39252 13 0 16 0 SRX822746 0.0 Metagenome 3300005522 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV257 DOE Joint Genome Institute (JGI) 3300005522 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 738924216 1993728 824 36 1388 57 SRX2782418 Unrestricted 0.0 Metagenome 3300020589 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States - Redfir_Yose_1 DOE Joint Genome Institute (JGI) 3300020589 Metagenome Analysis spades v. 3.10.1 Yes Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.6622 -119.6197 468575290 971213 7 11 2 25 SRX4002647 Unrestricted 37.14 Metagenome 3300040799 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Etang de Berre, Marignane, France - D305L2 Genopole Toulouse Midi-Pyrenees 3300040799 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.4847 5.188 106004860 176610 70 8 117 8 0.0 Metagenome 3300043427 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Icacos River, Naguabo, Naguabo, Puerto Rico - icacos_2019_sw_WHONDRS-S19S_0094 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043427 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 18.2758 -65.7853 771694914 1271840 314 92 444 135 Unrestricted 20.5 Metagenome 3300053777 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S53_B_D89 hydrophobic DOE Joint Genome Institute (JGI) 3300053777 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 455182141 736157 238 0 309 0 Restricted 0.0 Metagenome 3300013933 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00690 Weill Cornell Medical College 3300013933 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.81 -73.95 31616424 48945 20 0 41 0 SRX822657 0.0 Metagenome 3300021060 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from miscanthus, Michigan, USA - G6R3_NF_07NOV2016_LD2 MG DOE Joint Genome Institute (JGI) 3300021060 Metagenome Analysis spades v. 3.10.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Phyllosphere 42.39 -85.37 177078892 357533 113 78 140 116 SRX4080941 Unrestricted 31.44 Metagenome 3300009889 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY10 University of New South Wales 3300009889 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 38397536 66501 26 0 49 1 0.0 Metagenome 3300049845 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Oklahoma, USA - blueriver_2019_sed_WHONDRS-S19S_0024 DOE Joint Genome Institute (JGI) 3300049845 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 34.44205 -96.6227 559339074 1351517 848 25 1582 41 Restricted 0.0 Metagenome 3300056660 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.20C.9 SIP fraction DOE Joint Genome Institute (JGI) 3300056660 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 136442275 259935 126 14 219 20 Unrestricted 10.55 Metagenome 3300046786 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Farmington River, Simsbury, Connecticut, USA - farmington_2019_sw_WHONDRS-S19S_0053 (version 2) DOE Joint Genome Institute (JGI) 3300046786 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 41.8695 -72.7967 600378818 950763 385 84 621 153 Unrestricted 0.0 Metagenome 3300014317 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D1 DOE Joint Genome Institute (JGI) 3300014317 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.198971 -122.026955 361656808 894894 465 5 832 8 SRX7187017 Unrestricted 0.0 Metagenome 3300014946 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 635_12M Beijing Genomics Institute (BGI) 3300014946 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 118964674 156483 66 0 103 0 ERX491287 0.0 Metagenome 3300045013 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - CSC3D DOE Joint Genome Institute (JGI) 3300045013 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 1657327759 2911230 612 44 1110 68 Unrestricted 16.08 Metagenome 3300014785 *Microbiome Permanent Draft Human fecal microbial commmunities from Fecal Microbiota Transplantation (FMT) for ulcerative colitis - University of Washington Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P788T2 University of Washington 3300014785 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26288277 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 113432307 194331 89 0 149 0 SRX1131767 0.0 Metagenome 3300009033 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_D2_MG DOE Joint Genome Institute (JGI) 3300009033 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Soil 37.4971 -122.129 507500111 1024446 464 11 909 27 SRX2523922 Unrestricted 0.0 Metagenome 3300033808 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_20 DOE Joint Genome Institute (JGI) 3300033808 Metagenome Analysis spades v. 3.13.0 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Unclassified peatland -6.3272 -74.8136 403865356 1037549 422 8 698 9 SRX7525209 Unrestricted 6.91 Metagenome 3300045234 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_5_A DOE Joint Genome Institute (JGI) 3300045234 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 214395037 242115 117 1 136 1 Unrestricted 127.37 Metagenome 3300042232 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D222_2 DOE Joint Genome Institute (JGI) 3300042232 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 159050430 216975 101 4 153 10 Unrestricted 76.5 Metagenome 3300069205 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_005-M-20210726-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069205 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 40.043663 -105.569904 2847161623 6839571 1290 272 2344 490 0.0 Metagenome 3300046018 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Microbial mat bacterial communities from wetland, North Slope, Alaska, United States - TFS_WetSedge10_22June2019 DOE Joint Genome Institute (JGI) 3300046018 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes demerson@bigelow.org David Emerson No Environmental Aquatic Wetlands Freshwater Unclassified wetland microbial mat 68.6254 -149.5895 1590930493 2584843 816 342 1286 530 Unrestricted 18.49 Metagenome 3300001267 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300001267 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 14139961 33776 19 5 44 4 SRX3310951 Unrestricted 0.0 Metagenome 3300040153 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 031_R1_022417 University of Maryland 3300040153 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.22748333 25.01173889 9543628 20170 31 0 27 0 0.0 Metagenome 3300028709 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_118 DOE Joint Genome Institute (JGI) 3300028709 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92039953 -106.94828697 386115847 1157656 357 10 639 28 SRX5354616 Unrestricted 9.31 Metagenome 3300002103 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Incubations 11-33A DOE Joint Genome Institute (JGI) 3300002103 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.290884 -156.788063 219931192 432064 232 0 438 2 SRX1990924 Unrestricted 0.0 Metagenome 3300000996 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1093 DOE Joint Genome Institute (JGI) 3300000996 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 27926 81 12 1 25 5 SRX3311881 Unrestricted 0.0 Metagenome 3300012327 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100562 University of Pennsylvania 3300012327 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 15251276 39208 55 6 144 18 SRX756192 0.0 Metagenome 3300069490 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_001-O-20160809-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069490 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 24219217 85170 69 17 143 25 0.0 Metagenome 3300020435 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000586 (ERX556070-ERR599086) CEA Genoscope 3300020435 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -16.9727 -100.6633 1076961837 2703977 611 110 1071 187 0.0 Metagenome 3300044740 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - COC1S DOE Joint Genome Institute (JGI) 3300044740 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 2203773769 3889081 636 28 1215 41 Unrestricted 13.22 Metagenome 3300001289 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - Naphthalene biodegradation metagenome 13C5doseA DOE Joint Genome Institute (JGI) 3300001289 Metagenome Analysis No Yes elm3@cornell.edu Eugene Madsen Yes 30051558 Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.292222 -73.604444 19536072 31706 12 0 16 0 Unrestricted 0.0 Metagenome 3300023297 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #187 DOE Joint Genome Institute (JGI) 3300023297 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 236042504 574397 152 0 260 2 SRX4396749 Unrestricted 9.91 Metagenome 3300009999 *Microbiome Finished Microbiology of confined controlled built environments Public buildings (several types of infrastructure) floor microbial communities from the Eekholt wildlife park, Eekholt, Germany - public buildings L Eurofins MWG Operon 3300009999 Metagenome Analysis Ray Meta released per JGI data release policy No Yes alexander.mahnert@gmail.com Alexander Mahnert No Engineered Built environment Unclassified House Unclassified built environment 53.95025767 10.03109478 27684733 32857 6 0 8 1 0.0 Metagenome 3300013161 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100638 University of Pennsylvania 3300013161 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 21569421 55471 34 0 58 1 SRX756456 0.0 Metagenome 3300002311 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP09-I4 3300002311 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300013847 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - seawater enrichment SCG58 University of British Columbia 3300013847 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 1635654 3434 1 0 6 0 SRX143167 0.0 Metagenome 3300006047 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 DOE Joint Genome Institute (JGI) 3300006047 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment watersheds 41.5935 -78.5142 3852207051 13735531 2921 219 5654 409 SRX2839553 Unrestricted 0.0 Metagenome 3300034038 *Microbiome Permanent Draft Deception Metagenome Fumarole sediment microbial communities from Whalers Bay, Deception Island, Antarctica - WBA2 The Brazilian National Council for Scientific and Technological Development (CNPq) 3300034038 Metagenome Analysis IDBA-ud v. 1.1.1 released per Amanda Bendia -- GOLD-1013 No Yes amandagbendia@gmail.com Amanda Bendia No Environmental Aquatic Volcanic Marine Unclassified fumarole sediment -63.18 -60.67 63790015 81951 31 1 71 1 0.0 Metagenome 3300027192 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.715 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027192 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 160769832 359486 162 34 268 53 SRX2753576 Unrestricted 19.27 Metagenome 3300025635 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025635 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 314297710 746077 158 3 248 4 SRX2751897 Unrestricted 0.0 Metagenome 3300024286 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK28 DOE Joint Genome Institute (JGI) 3300024286 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 169017228 437163 262 23 444 34 SRX4547584 Unrestricted 7.87 Metagenome 3300007150 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila falleni female 3 gut Cornell University 3300007150 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy Yes Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila falleni female adult gut 43.025606 -77.572811 142238349 351146 92 4 154 5 0.0 Metagenome 7000000497 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 160502038 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000497 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2434659 2832 0 0 0 0 0.0 Metagenome 3300001814 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_CSW13A DOE Joint Genome Institute (JGI) 3300001814 Metagenome Analysis Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 73246877 119215 89 1 176 1 SRX3321665 Unrestricted 0.0 Metagenome 3300045561 *Microbiome Draft Lake microbial communities from Canada Lake sediment microbial communities from the Prairies ecozone, Canada - Lake 10-361 Genome Quebec 3300045561 Metagenome Analysis MEGAHIT v1.0.6 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Lake Sediment 49.839573 -102.425933 220514575 297029 83 10 128 9 0.0 Metagenome 3300006655 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T8 (3) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006655 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 36367100 73501 42 0 70 0 0.0 Metagenome 2209111022 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - Chitin enrichment 454 Life Sciences 2209111022 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.481481 0.222231 5.2 35436790 80612 50 0 92 0 0.0 Metagenome 3300006967 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada T0 (1) T34 (live) enrichments of Methanogenic microbial communities using Athabascan oil sands Shell Corporation 3300006967 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 25648119 44401 26 0 32 0 0.0 Metagenome 3300008496 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 160178356 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008496 Metagenome Analysis SPADES 3.6.1 released per Rekha Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 125865402 156646 89 0 105 0 0.0 Metagenome 3300040398 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_034-O-20160811-COMP-DNA1 Battelle Memorial Institute 3300040398 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 5429090 16209 40 3 77 7 0.0 Metagenome 3300070301 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_002-M-20180924-COMP-DNA1 3300070301 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 23695185 72189 105 20 203 24 0.0 Metagenome 3300044968 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - MERF-8-26-19 DOE Joint Genome Institute (JGI) 3300044968 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.2436 -120.3775 534093184 1405852 623 55 1088 93 Restricted 7.18 Metagenome 3300007305 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 158802708 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007305 Metagenome Analysis SPADES 3.6.1 released per Rekha Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 172170219 225964 156 0 231 0 0.0 Metagenome 3300046710 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-C1 60-64 DOE Joint Genome Institute (JGI) 3300046710 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0435 577281113 896153 291 1 468 2 Restricted 13.56 Metagenome 3300027741 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027741 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 46.8319 -72.5 704418065 1387901 330 115 527 175 SRX2955012 Unrestricted 0.0 Metagenome 3300035111 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 DOE Joint Genome Institute (JGI) 3300035111 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1125 -122.987 1316382173 3232608 905 71 1588 136 SRX8287265 Unrestricted 7.35 Metagenome 3300039179 *Microbiome Finished Marine algae associated bacterial community from Sydney, Australia Marine algae associated bacterial community from Sydney, Australia - Ulva australis_CR4 Ramaciotti Centre for Genomics 3300039179 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes j.nappi@unsw.edu.au Jadranka Nappi No Host-associated Algae Unclassified Unclassified Unclassified Marine -33.990304 151.231529 351070053 500440 44 9 79 11 0.0 Metagenome 3300013390 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100174 University of Pennsylvania 3300013390 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 1333265 3412 2 2 4 4 SRX756359 0.0 Metagenome 3300070599 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_071-M-20180627-COMP-DNA2 Battelle Memorial Institute 3300070599 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 45.829046 -121.958541 5.39-5.83 3568542 11944 24 6 51 7 0.0 Metagenome 3300014021 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00941 Weill Cornell Medical College 3300014021 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.69 -73.91 26179537 44056 14 0 18 0 SRX822904 0.0 Metagenome 3300003501 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_130m_DNA DOE Joint Genome Institute (JGI) 3300003501 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 228431425 468019 275 31 442 41 Unrestricted 0.0 Metagenome 3300036709 *Microbiome Permanent Draft Lab enriched sediment microbial communities from Bremen, Germany Lab enriched sediment microbial communities from Bremen, Germany - KS CeGaT 3300036709 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy No Yes yu-ming.huang@outlook.com; sara.kleindienst@uni-tuebingen.de Yu-Ming Huang; Sara Kleindienst Yes 34020935 Engineered Lab enrichment Anaerobic media Defined media Unclassified Freshwater sediment 53.110315 8.847388 18525762 25559 14 0 47 0 0.0 Metagenome 3300031235 *Microbiome Permanent Draft Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG DOE Joint Genome Institute (JGI) 3300031235 Metagenome Analysis spades v. 3.12.0 Yes Yes rbneum@uw.edu Rebecca Neumann No Host-associated Plants Rhizosphere Roots Soil rhizosphere 47.6516 -122.3045 1134181555 2666274 806 9 1302 26 SRX5346108 Unrestricted 9.07 Metagenome 3300001031 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1116 DOE Joint Genome Institute (JGI) 3300001031 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 236327 711 23 0 36 0 SRX1987161 Unrestricted 0.0 Metagenome 3300021387 *Microbiome Draft Cattle and sheep rumen microbial communities from New Zealand, for comparative studies Sheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly DOE Joint Genome Institute (JGI) 3300021387 Metagenome Analysis SPADES 3.11.0 released per Natalia and Tijana Yes Yes NNIvanova@lbl.gov; cfan@lbl.gov Natalia Ivanova; Hei Fan No Host-associated Mammals Stomach Digestive system Rumen Cattle and sheep rumen -42.26 171.6 2597902892 4577964 2274 20 3529 32 0.0 Metagenome 3300044915 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_6_E DOE Joint Genome Institute (JGI) 3300044915 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 160379628 203507 86 1 112 1 Unrestricted 75.55 Metagenome 3300003399 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 PM DOE Joint Genome Institute (JGI) 3300003399 Metagenome Analysis revert back to private per Christa Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 10787973 30415 135 11 230 14 SRX2574397 Unrestricted 0.0 Metagenome 3300040992 *Microbiome Permanent Draft Freshwater lake viral communities from Lake Michigan, near Chicago, USA Freshwater lake viral communities from Lake Michigan, near Chicago, USA - Montrose 5-Jul-13 Genewiz Inc., Loyola University 3300040992 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.58 -87.38 39826843 79220 45 1 67 1 0.0 Metagenome 3300040374 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA FertPrarie soil microbial communities from Boone County, Iowa, USA - PF41-WS-July2012 Iowa State University 3300040374 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land FertPrarie soil 42.01375 -93.783837 6140819 21119 76 3 197 17 0.0 Metagenome 3300021555 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge Stylissa sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - st20is 200bp no Eukaryotes last University of New South Wales 3300021555 Metagenome Analysis IDBA-UD released by Emmanuelle BOTTE Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Stylissa sp. (marine sponge) -9.40556 150.816667 142482247 218292 30 9 42 15 0.0 Metagenome 3300012563 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100271 University of Pennsylvania 3300012563 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9518397 26388 15 3 32 2 SRX756630 0.0 Metagenome 3300022900 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011510BT metaG (version 2) DOE Joint Genome Institute (JGI) 3300022900 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 732029513 1261424 428 40 736 59 SRX4070917 Unrestricted 39.42 Metagenome 3300050260 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_12 DOE Joint Genome Institute (JGI) 3300050260 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -76.901 160.91 176722298 279180 10 7 23 8 SRX18235984 Restricted 60.82 Metagenome 3300029510 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI003273-106 Beijing Genomics Institute (BGI) 3300029510 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 134947802 152719 107 0 154 0 0.0 Metagenome 3300010284 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial mat communities from California, USA to study Microbial Dark Matter (Phase II) - Cone Pool mat layer H metaG DOE Joint Genome Institute (JGI) 3300010284 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; jspear@mines.edu; jkjarett@lbl.gov Ramunas Stepanauskas; John Spear; Jessica Jarett No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 245652558 469554 330 3 532 5 SRX2526467 Unrestricted 0.0 Metagenome 3300021369 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2016_3, parmeate Toyama Prefectural University 3300021369 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Sediment marine 37.36076 137.95754 58355262 170562 27 1 71 0 0.0 Metagenome 3300035422 *Microbiome Permanent Draft Mouse fecal microbial communities from various locations Fecal microbial communities from mouse strain C57/BL6 in USA - 1-6 Beijing Genomics Institute (BGI) 3300035422 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 40.70606 -73.99703 81561217 138775 71 0 129 1 0.0 Metagenome 3300025440 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring and microbial mat streamer communities from Octopus Spring Streamers, Yellowstone National Park, USA - OCT_B (SPAdes) (version 4) DOE Joint Genome Institute (JGI) 3300025440 Metagenome Analysis spades v. 3.11.1 Yes Yes binskeep@montana.edu; jim.fredrickson@pnnl.gov William P. Inskeep; Jim Fredrickson Yes 26140529 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring and microbial mat streamer 44.376 -110.69 8.6 152818410 356023 119 0 108 0 SRX2553561 Unrestricted 0.0 Metagenome 3300022220 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_21 DOE Joint Genome Institute (JGI) 3300022220 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Sediment Marine Unclassified sediment 37.79 -122.36 955714040 2292665 858 57 1473 103 SRX4055349 Unrestricted 7.79 Metagenome 3300032242 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime Ecozone, Canada - Lake 07-026 Genome Quebec 3300032242 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.89213 -65.726518 607415899 1144817 266 65 444 132 0.0 Metagenome 3300004017 *Microbiome Permanent Draft Oil sludge microbial communities from Kazan, Tatarstan Republic, Russia Oil sludge microbial communities from Kazan, Tatarstan Republic, Russia - Industrial hydrocarbon sludge4 Kazan Federal University 3300004017 Metagenome Analysis Velvet released per JGI data release policy No Yes boulygina@gmail.com Evgenia Boulygina, Eugenia Boulygina No Engineered Wastewater Unclassified Industrial wastewater Unclassified Oil sludge 55.860572 48.996319 0 0 0 0 0 0 0.0 Metagenome 3300035244 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Soil microbial communities from West Virginia, United States - Field_WV_2 DOE Joint Genome Institute (JGI) 3300035244 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Environmental Terrestrial Agricultural land Soil Bulk soil soil 39.6589 -79.9058 605632808 1712011 712 33 1341 66 SRX8289794 Unrestricted 6.66 Metagenome 3300036935 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8SP15 DOE Joint Genome Institute (JGI) 3300036935 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 826653138 1838450 518 15 962 22 SRX8379682 Unrestricted 8.48 Metagenome 3300034414 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B1A4.3 DOE Joint Genome Institute (JGI) 3300034414 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 264342347 751676 538 2 1015 1 SRX7658936 Unrestricted 6.21 Metagenome 3300013126 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo - kab_022012_10m DOE Joint Genome Institute (JGI) 3300013126 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -1.64 29.05 1517372937 2858994 1276 139 1988 197 SRX7699242 Unrestricted 23.19 Metagenome 3300006782 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_10_10 DOE Joint Genome Institute (JGI) 3300006782 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 19799876 51737 50 0 55 0 SRX2924360 Unrestricted 0.0 Metagenome 3300011216 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00484 Weill Cornell Medical College 3300011216 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.82 -73.89 38910850 56434 16 0 31 0 SRX822453 0.0 Metagenome 3300025602 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_200m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025602 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 366371078 662651 276 4 402 4 SRX2518460 Unrestricted 0.0 Metagenome 3300037134 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPN1-2-M DOE Joint Genome Institute (JGI) 3300037134 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3568 19.0503 719285555 1332197 245 16 410 41 SRX8861858 Unrestricted 13.32 Metagenome 3300003798 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003798 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 31613754 79901 36 8 61 17 SRX2565366 Unrestricted 0.0 Metagenome 3300045526 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Brazos River, Texas, USA - NASQAN2014_035 DOE Joint Genome Institute (JGI) 3300045526 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 29.3496 -95.5824 451977862 1008379 418 95 690 140 Unrestricted 0.0 Metagenome 3300001143 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 DOE Joint Genome Institute (JGI) 3300001143 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 15453478 48948 126 16 252 24 SRX2552951, SRX2552950 Unrestricted 0.0 Metagenome 3300002027 *Microbiome Permanent Draft Sinkhole freshwater microbial communities from Lake Huron, US Sinkhole freshwater microbial communities from Lake Huron, USA - Flux 1.5k-5k University of Michigan 3300002027 Metagenome Analysis IDBA UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Sinkhole Freshwater Unclassified Sinkhole freshwater 45.19843 -83.32721 492507486 660077 136 36 170 21 0.0 Metagenome 3300038375 *Microbiome Permanent Draft Marine microbial communities from Northern Baffin Bay, Arctic Ocean Marine microbial communities from Northern Baffin Bay, Arctic Ocean - surface_st115_2018 CEA Genoscope 3300038375 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy Yes Yes nastasia.freyria.1@ulaval.ca Nastasia Freyria No Environmental Aquatic Oceanic Marine Photic zone marine 76.58 -71.4 3410012004 9535588 3237 1241 3494 2537 0.0 Metagenome 3300020323 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001027 (ERX555979-ERR599120) CEA Genoscope 3300020323 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -25.8126 -111.7386 240280623 625923 224 17 366 30 0.0 Metagenome 3300001696 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A4-11 DOE Joint Genome Institute (JGI) 3300001696 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 391587 1425 21 0 48 0 SRX1990511 Unrestricted 0.0 Metagenome 3300000255 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_F_10_SI03_135 DOE Joint Genome Institute (JGI) 3300000255 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Oceanic Marine Photic zone Marine 48.35 -123.3 167905077 368662 124 2 251 4 Unrestricted 0.0 Metagenome 3300009792 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama - MetaG Plot_12 DOE Joint Genome Institute (JGI) 3300009792 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes cpan@ou.edu Chongle Pan No Environmental Terrestrial Tropical forest Soil Bulk soil Tropical forest soil 9.1086 -79.8436 2688977764 6158930 1094 54 2051 118 SRX2525679 Unrestricted 0.0 Metagenome 3300069232 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_029-O-20170621-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069232 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 32354729 102324 87 5 149 11 0.0 Metagenome 3300042205 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D10_3 DOE Joint Genome Institute (JGI) 3300042205 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 397478216 628704 206 21 255 31 Unrestricted 25.14 Metagenome 3300012011 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M University of Tennessee 3300012011 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 408377547 845141 108 5 171 5 SRX710597 0.0 Metagenome 3300013672 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100200 University of Pennsylvania 3300013672 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8178348 22085 10 1 11 3 SRX756699 0.0 Metagenome 3300030051 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_2 DOE Joint Genome Institute (JGI) 3300030051 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 1063940206 2153030 373 31 614 43 SRX5355783 Unrestricted 12.25 Metagenome 3300029750 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 016_6_10_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029750 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 141904690 183995 112 0 182 0 0.0 Metagenome 3300007938 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 158479027 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007938 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 41243635 80752 40 0 72 0 0.0 Metagenome 3300038596 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from Daisy Lake, Ontario, Canada Freshwater lake sediment microbial communities from Daisy Lake, Ontario, Canada - D51 University of Cambridge 3300038596 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 46.27199 -80.52479 22005639 52576 47 0 61 0 0.0 Metagenome 3300020402 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B000000609 (ERX555971-ERR599057) CEA Genoscope 3300020402 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -15.331 43.2908 834991093 2204608 576 57 902 157 ERX555971 0.0 Metagenome 3300055022 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_43-s37 day 365 DOE Joint Genome Institute (JGI) 3300055022 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 714419876 1052890 204 130 320 161 Unrestricted 29.06 Metagenome 3300014652 *Microbiome Permanent Draft Alkaline hot spring microbial communities from Galicia, Spain Alkaline hot spring microbial communities from Galicia, Spain - Lobios hot spring The University of A Coru?a 3300014652 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26635759 Environmental Aquatic Hot (42-90C) Thermal springs Alkaline Alkaline hot spring 41.86113 -8.1062 28972921 46850 23 0 37 0 SRX1181970 0.0 Metagenome 3300042925 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-332 Genome Quebec 3300042925 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.896614 -120.564326 1201794982 2545723 484 214 868 381 0.0 Metagenome 3300026357 *Microbiome Permanent Draft Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 PU5 DOE Joint Genome Institute (JGI) 3300026357 Metagenome Analysis spades v. 3.11.1 Yes Yes ccraft@indiana.edu Chris Craft No Environmental Aquatic Wetlands Freshwater Sediment sediment 31.3377 -81.4644 149464742 403244 206 2 379 8 SRX4796524 Unrestricted 7.81 Metagenome 3300038612 *Microbiome Permanent Draft Seawater microbial communities from the Baltic Proper 10 km east of Oland, Sweden Seawater microbial communities from the Baltic Proper 10 km east of Oland, Sweden - LMO_120604 Royal Institute of Technology 3300038612 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 26667648 Environmental Aquatic Unclassified Marine Unclassified Seawater 56.93085 17.060667 11527832 30855 32 1 41 4 SRX1050743 0.0 Metagenome 3300065654 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 828a in Etizkom, Alberta, Canada - S00JY_0482 Microbiome Insights 3300065654 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.3635388 -111.0815252 125524780 174718 56 3 98 3 0.0 Metagenome 3300020379 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168) CEA Genoscope 3300020379 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -5.2476 -85.3343 659876403 1827140 353 11 568 26 0.0 Metagenome 3300042861 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Oct2001-rr0231 DOE Joint Genome Institute (JGI) 3300042861 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1044007246 1539583 376 10 483 20 Unrestricted 24.14 Metagenome 3300000895 *Microbiome Draft Wetland microbial communities from Twitchell Island in the Sacramento Delta Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk v7 (version 7) DOE Joint Genome Institute (JGI) 3300000895 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes stringe@lbl.gov Susannah Tringe Yes 25991679 Environmental Aquatic Wetlands Marine Sediment Wetland 38.107057 -121.647578 243213055 583095 576 5 922 11 Unrestricted 0.0 Metagenome 3300019362 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300019362 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 1382590105 3404078 1318 83 2618 144 SRX3899442, SRX3899441 Unrestricted 0.0 Metagenome 3300042147 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_080116_2618 DOE Joint Genome Institute (JGI) 3300042147 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.9457 -103.6985 241910941 660516 346 12 549 15 Unrestricted 8.15 Metagenome 3300019740 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FRC_4-5_MG DOE Joint Genome Institute (JGI) 3300019740 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 142294969 339118 181 10 429 16 SRX3983338 Unrestricted 3.82 Metagenome 3300041023 *Microbiome Permanent Draft Contaminated soil microbial communities from Humid Pampas, Chascomus Partido, Argentina Contaminated soil microbial communities from Humid Pampas, Chascomus Partido, Argentina - L1_935 Illumina 3300041023 Metagenome Analysis Megahit v. 1.2.10 released by JGI data releasing policy No Yes valeria.imperato@uhasselt.be Valeria Imperato No Environmental Terrestrial Unclassified Soil Agricultural land Contaminated soil -35.5787 -58.0138 16534299 35115 28 1 51 2 0.0 Metagenome 3300050298 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_60 DOE Joint Genome Institute (JGI) 3300050298 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -75.858 159.974 390823429 597110 96 6 128 11 SRX18235989 Restricted 30.21 Metagenome 3300031639 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - AG5_32.2 DOE Joint Genome Institute (JGI) 3300031639 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified Marine 70.5467 -122.9077 792841108 1631713 721 232 1069 392 SRX5797746 Unrestricted 16.04 Metagenome 3300049785 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Woodchip biofilm microbial communities from field WBR in Freeville, NY, USA - field_wbr_p2 DOE Joint Genome Institute (JGI) 3300049785 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.516658 -76.333335 661349803 1594673 708 23 1194 43 Unrestricted 7.08 Metagenome 3300005337 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG DOE Joint Genome Institute (JGI) 3300005337 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn rhizosphere 42.3948 -85.3738 5317734870 15468083 4880 527 8345 862 SRX2740413 Unrestricted 0.0 Metagenome 3300029595 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36057 Beijing Genomics Institute (BGI) 3300029595 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 181760386 231445 169 0 232 0 0.0 Metagenome 3300007527 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human subgingival plaque microbial communities from NIH, USA - visit 1, subject 763496533 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007527 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human 39.0042816 -77.1012173 159677406 274477 223 1 288 4 0.0 Metagenome 3300001512 *Microbiome Permanent Draft Human axilla skin microbial communities from the University of Liverpool, UK Human axilla skin microbial communities from the University of Liverpool, UK - AX12 3300001512 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Host-associated Mammals: Human Skin Integumentary system Axilla/Armpit Human axilla skin 53.3484 -3.009 25018144 46789 10 3 15 11 0.0 Metagenome 3300025081 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection B2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025081 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.53 -107.78 280875036 497656 337 1 488 6 SRX1990958 Unrestricted 0.0 Metagenome 3300000746 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 05AUG2008 hypolimnion DOE Joint Genome Institute (JGI) 3300000746 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300070784 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_010-O-20200106-COMP-DNA1 3300070784 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 14156151 45778 59 2 72 0 0.0 Metagenome 3300017511 *Microbiome Permanent Draft Bras del Port Mayo 2015 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CCAB May 2015 University of Valencia 3300017511 Metagenome Analysis idba.1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Non-marine hypersaline water 38.1922 -0.5918 47551978 139286 0 0 3 0 0.0 Metagenome 3300056970 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E1P_0_1 DOE Joint Genome Institute (JGI) 3300056970 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.996961 -81.487381 1908744486 3004028 727 22 1149 37 Unrestricted 15.27 Metagenome 3300030732 *Microbiome Permanent Draft Wheat crown rot disease influences the structure and diversity of wheat-associated microbiome Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 University of Western Sydney 3300030732 Metagenome Analysis MEGAHIT v. 1.0 released by JGI data releasing policy No Yes h.liu2@westernsydney.edu.au hongwei liu No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soils -27.565194 151.864444 134614212 296936 160 15 329 47 0.0 Metagenome 3300044990 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater bacterial communities from Lake Mendota, Wisconsin, United States - ME_2020-09-11_15m_Bacteria_A DOE Joint Genome Institute (JGI) 3300044990 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 1072249321 1583330 396 17 569 20 Unrestricted 15.47 Metagenome 3300027283 *Microbiome Permanent Draft Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland, that are autotrophic Deep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/37_all (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027283 Metagenome Analysis spades v. 3.11.1 Yes Yes rizlan.bernier-latmani@epfl.ch Rizlan Bernier-Latmani Yes 27739431 Environmental Aquatic Groundwater Deep subsurface Porewater Deep surbsurface 47.379 7.1648 287083245 414815 198 2 262 2 SRX957932 Unrestricted 0.0 Metagenome 3300053755 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FL_01 DOE Joint Genome Institute (JGI) 3300053755 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.407926 -82.180036 358942248 529686 12 27 20 16 Restricted 163.93 Metagenome 3300028836 *Microbiome Permanent Draft Axial Seamount Reassemblies Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS891_Anemone_DNA IDBA_reassembly 3300028836 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes cfortunato@gmail.com; randerson@carleton.edu; elks@mit.edu Caroline Fortunato; Rika Anderson; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933231 -130.013645 347950772 807213 689 37 1146 55 0.0 Metagenome 3300002118 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_1 DOE Joint Genome Institute (JGI) 3300002118 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 65576540 188909 275 17 562 29 SRX1990984 Unrestricted 0.0 Metagenome 3300013368 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway water -PAB005 Weill Cornell Medical College 3300013368 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Unclassified city subway water 40.7 -74.01 35547495 72685 36 0 51 0 SRX823433 0.0 Metagenome 3300069263 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_041-O-20210803-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069263 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tundra Soil Unclassified Terrestrial soil 68.666666 -149.369752 3221413903 6875234 1217 169 2232 249 0.0 Metagenome 3300071088 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Arizona, USA - SRER_003-M-20180801-COMP-DNA1 3300071088 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 4066 17 0 0 1 0 0.0 Metagenome 3300004812 *Microbiome Permanent Draft Salt marsh microbial communities from Little Sippewissett, Woods Hole, MA that are anoxygenic and photosynthetic Marine anoxygenic phototrophic community R2 sample Marine Biological Laboratory 3300004812 Metagenome Analysis CLC released per JGI data release policy No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Intertidal zone Marine Salt marsh marine 41.5758508 -70.635807 7587679 12026 4 0 12 0 0.0 Metagenome 3300029376 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 091_4_29_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029376 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 240717361 326773 237 0 303 0 0.0 Metagenome 3300046003 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater viral communities from Lake Mendota, Wisconsin, United States - ME_2020-08-25_15m_Virus_AB DOE Joint Genome Institute (JGI) 3300046003 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 710160669 1361936 148 7 232 11 Unrestricted 47.08 Metagenome 3300013315 *Microbiome Permanent Draft Sediment microbial communities from Acid Mine Drainage (AMD) holding pond in Pittsburgh, PA, USA Sediment microbial communities from Acid Mine Drainage holding pond in Pittsburgh, PA, USA - 1B University of California, Davis 3300013315 Metagenome Analysis MegaHit released per PI's request No Yes mclimcj13@juniata.edu Christopher McLimans No Engineered Wastewater Mine water Industrial wastewater Sediment Sediment 40.4406 -79.9959 663748475 1381741 424 36 822 55 0.0 Metagenome 3300060454 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210616_20_09 DOE Joint Genome Institute (JGI) 3300060454 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 403898719 593319 199 115 256 127 Unrestricted 40.04 Metagenome 3300040191 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA FertPrarie soil microbial communities from Boone County, Iowa, USA - PF41-MM-July2012 Iowa State University 3300040191 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land FertPrarie soil 42.01375 -93.783837 10406461 33998 36 4 104 8 0.0 Metagenome 3300002165 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - LP-52 DOE Joint Genome Institute (JGI) 3300002165 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 50.0003 -144.9996 39994156 69702 39 0 57 0 Unrestricted 0.0 Metagenome 3300046795 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 soil DOE Joint Genome Institute (JGI) 3300046795 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Botanical garden Soil Bulk soil Soil 44.5882 -123.1925 637070941 1130746 276 15 527 25 Unrestricted 15.35 Metagenome 3300033813 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Sediment microbial communities from East River floodplain, Colorado, United States - 30_j17 DOE Joint Genome Institute (JGI) 3300033813 Metagenome Analysis spades v. 3.13.0 Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Aquatic Sediment Floodplain Unclassified sediment 38.9229 -106.9499 440687027 1193678 454 5 934 7 SRX7630719 Unrestricted 9.19 Metagenome 3300031773 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915 DOE Joint Genome Institute (JGI) 3300031773 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.7468 -122.0193 1745498940 3861960 1216 231 1858 419 SRX6423949 Unrestricted 12.74 Metagenome 3300044694 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R DOE Joint Genome Institute (JGI) 3300044694 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 14.75 -16.85 1384093257 2365089 447 44 810 48 Unrestricted 15.48 Metagenome 3300056674 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - APS1_3W_T0 DOE Joint Genome Institute (JGI) 3300056674 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 1793130552 2340062 569 85 710 122 Unrestricted 34.46 Metagenome 3300032299 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains Ecozone, Canada - Lake 08-216 Genome Quebec 3300032299 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.87875 -82.886544 606020916 1199286 321 64 593 159 0.0 Metagenome 3300045008 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_550m_2014 DOE Joint Genome Institute (JGI) 3300045008 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 1209037550 2321822 965 5 1731 11 Unrestricted 12.18 Metagenome 3300014796 *Microbiome Permanent Draft Bacterial communities from hot springs in Japan Sediment microbial communities from hot springs in Jinata Onsen, Shikinejima, Japan - Pool 3 California Institute of Technology 3300014796 Metagenome Analysis MegaHit v. 1.02 released by JGI data releasing policy Yes Yes LMWARD@post.harvard.edu Lewis Ward No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 34.326111 139.21 6.7 131681623 215397 143 0 179 0 0.0 Metagenome 3300011545 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00634 Weill Cornell Medical College 3300011545 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.83 -73.94 19851241 28300 9 0 15 0 SRX822601 0.0 Metagenome 3300004128 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SN (version 2) (version 3) DOE Joint Genome Institute (JGI) 3300004128 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 1074262896 2935136 594 173 1063 412 SRX2565073, SRX2565074, SRX2565075 Unrestricted 0.0 Metagenome 3300013787 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS852 IDBA reassembly Marine Biological Laboratory 3300013787 Metagenome Analysis reassembly with IDBA-UD released by JGI data releasing policy No Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow marine hydrothermal vent 18.547101 -81.71817 6.45 24101210 29797 20 1 27 1 0.0 Metagenome 3300021074 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L442-17m DOE Joint Genome Institute (JGI) 3300021074 Metagenome Analysis spades v. 3.10.1 Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.775 -93.818 795245318 1753900 737 23 1254 43 SRX3984549 Unrestricted 15.92 Metagenome 3300011138 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01020 Weill Cornell Medical College 3300011138 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.67 -73.83 15638950 20623 5 0 18 0 SRX822982 0.0 Metagenome 3300009656 *Microbiome Permanent Draft Anaerobic biogas reactor microbial communites from Washington, USA Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_B C12 SIP DNA DOE Joint Genome Institute (JGI) 3300009656 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes dacb@uw.edu David Beck Yes 28895946 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic biogas reactor 47.6525 -122.3049 631999526 1062802 505 0 727 3 SRX2339135 Unrestricted 0.0 Metagenome 3300020212 *Microbiome Permanent Draft Processed tobacco microbial communities from USA domestic dry snuff Processed tobacco microbial communities from USA domestic dry snuff from retail store in Atlanta, GA, USA - Dry Snuff D2 SPADES Meta re-assembly Centers for Disease Control and Prevention (CDC), USA 3300020212 Metagenome Analysis SPADES Meta 3.10.0 released by Tyx Yes Yes wyu3@cdc.gov Robert E. Tyx No Engineered Food production Unclassified Unclassified Unclassified Processed Tobacco 33.881 -84.294 134249595 172772 155 28 193 46 0.0 Metagenome 3300040949 *Microbiome Permanent Draft Marine microbial communities from the Puerto Rico Trench, Atlantic Ocean Marine microbial communities from the Puerto Rico Trench, Atlantic Ocean - 6000m Tfinal Michigan State University 3300040949 Metagenome Analysis metaSPAdes v. 3.0 released by JGI data releasing policy No Yes alm067@ucsd.edu; dhondt@uri.edu Alvaro M. Plominsky; Steven D'Hondt No Environmental Aquatic Hadalpelagic Marine Unclassified Marine 19.3592 -65.346517 1248252838 2421326 205 46 635 89 0.0 Metagenome 3300002822 *Microbiome Permanent Draft Mangrove soil microbial communities from Bertioga, Brazil, sampling enzymes Illumina_Fosmid_Bertioga 3300002822 Metagenome Analysis CLC Bio released by JGI data releasing policy No Yes dfdomingos@uol.com.br Daniela Domingos, Daniela F. Domingos No Environmental Aquatic Intertidal zone Marine Mangrove sediment Mangrove soil -23.89694 -46.20778 256544320 417925 10 0 33 1 0.0 Metagenome 3300025197 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0262 (SPAdes) DOE Joint Genome Institute (JGI) 3300025197 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -3.03 -27.33 55173768 116727 77 2 120 1 SRX1983272 Unrestricted 0.0 Metagenome 3300042468 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Aug2015-rr0469 DOE Joint Genome Institute (JGI) 3300042468 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1071650708 1664787 380 78 595 133 Unrestricted 16.5 Metagenome 3300005459 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 DOE Joint Genome Institute (JGI) 3300005459 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 5602943103 15547862 3954 252 6559 490 SRX2834452 Unrestricted 0.0 Metagenome 3300000985 *Microbiome Permanent Draft Sinkhole freshwater microbial communities from Lake Huron, US Sinkhole freshwater microbial communities from Lake Huron, USA - r2gDNA Night3 University of Michigan 3300000985 Metagenome Analysis released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Sinkhole Freshwater Unclassified Sinkhole freshwater 45.19843 -83.32721 35639022 72152 82 29 116 35 0.0 Metagenome 3300015261 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG DOE Joint Genome Institute (JGI) 3300015261 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.1591 -96.4086 617059037 1224698 780 40 1096 50 SRX3579733 Unrestricted 17.95 Metagenome 3300001752 *Microbiome Permanent Draft Marine sediment microbial communities from White Oak River estuary, North Carolina Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-36_30 DOE Joint Genome Institute (JGI) 3300001752 Metagenome Analysis Yes Yes acidophile@gmail.com Brett Baker Yes 26824177 Environmental Aquatic Intertidal zone Marine Estuary: Microbial mat Marine sediment 34.640199 -77.109447 546713840 1387307 514 10 943 6 SRX3317630 0.0 Metagenome 3300005824 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.180_BBC Oregon Health and Science University (OHSU) 3300005824 Metagenome Analysis unassembled released per JGI data release policy No Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Unclassified Sediment Unclassified sediment (intertidal) 46.26975 -123.94603 520431382 1058017 526 79 989 129 0.0 Metagenome 3300011406 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT539_2 DOE Joint Genome Institute (JGI) 3300011406 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9781 -107.0029 183000096 472994 416 22 981 50 SRX3539345 Unrestricted 0.0 Metagenome 3300006677 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human right retroauricular crease microbial communities from NIH, USA - visit 2 of subject 764083206 replicate 2 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300006677 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 29059331 71925 13 5 25 14 SRX024911 0.0 Metagenome 3300039123 *Microbiome Permanent Draft Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA - pen10 University of Minnesota 3300039123 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic River Freshwater Unclassified Freshwater 44.917867 -93.128967 4427544 5108 5 0 3 0 0.0 Metagenome 3300017751 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 13 SPOT_SRF_2010-07-21 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017751 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 421162286 936670 41 68 68 113 SRX7207084, SRX7207085 Unrestricted 0.0 Metagenome 3300012532 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG DOE Joint Genome Institute (JGI) 3300012532 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.5673 -123.4758 2179858532 4021147 1119 23 2025 59 SRX3372740 Unrestricted 0.0 Metagenome 3300049317 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA34 DOE Joint Genome Institute (JGI) 3300049317 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 711092532 1788191 482 5 1018 7 Unrestricted 7.48 Metagenome 3300000659 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 69 DOE Joint Genome Institute (JGI) 3300000659 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 1347347 4277 7 0 22 0 SRX4341332 Unrestricted 0.0 Metagenome 3300003342 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection D3 DOE Joint Genome Institute (JGI) 3300003342 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 27774985 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.534762 -107.782602 72342658 145665 103 10 203 8 SRX1085372, SRX2233596 Unrestricted 0.0 Metagenome 3300024295 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5 DOE Joint Genome Institute (JGI) 3300024295 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 351134968 796363 204 14 350 26 SRX4415366, SRX8128072 Unrestricted 0.0 Metagenome 3300003760 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 DOE Joint Genome Institute (JGI) 3300003760 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 86896242 143700 73 0 98 0 SRX2770669 Unrestricted 0.0 Metagenome 3300042609 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Prorhinotermes canalifrons from BAM Federal Institute for Materials Research and Testing, Berlin, Germany - Pc512 Eurofins MWG Operon 3300042609 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 52.443245 13.287523 1260052470 1263674 184 19 227 18 0.0 Metagenome 3300014845 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01534 Weill Cornell Medical College 3300014845 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.99 22331349 34554 14 3 24 4 SRX823410 0.0 Metagenome 3300017943 *Microbiome Permanent Draft Coastal wetland sediment microbial communities from the Mid-Atlantic and Southeast Atlantic Coast of USA, responding to salinity intrusion. Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4 DOE Joint Genome Institute (JGI) 3300017943 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Freshwater sediment 35.9061 -76.1569 1322533142 2637640 650 5 1081 5 SRX4368696 Unrestricted 6.43 Metagenome 3300070542 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from North Sterling, Colorado, USA - STER_028-M-20160816-COMP-DNA1 Battelle Memorial Institute 3300070542 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Agricultural land Soil Unclassified Terrestrial soil 40.473273 -103.018333 6.32-8.16 1533865 5646 11 0 21 1 0.0 Metagenome 3300013769 *Microbiome Permanent Draft Sewage treatment plant microbial communities from Vermont, USA Sewage treatment plant microbial communities from Vermont, USA - Sand_B Norwich University 3300013769 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 27610223 Engineered Wastewater Unclassified Industrial wastewater Unclassified Sewage treatment plant 43.727094 -72.425964 448800868 1008521 132 1 276 5 SRX1058470 0.0 Metagenome 3300008485 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764325968 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008485 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 78831192 136206 78 0 99 0 0.0 Metagenome 3300049066 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - K6_A_BS (version 2) DOE Joint Genome Institute (JGI) 3300049066 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 57627203 138790 224 10 486 10 Unrestricted 0.0 Metagenome 3300048571 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_40 DOE Joint Genome Institute (JGI) 3300048571 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9703 -106.997 219242152 495360 556 144 1039 204 Restricted 0.0 Metagenome 3300043134 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5WB15 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043134 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 54905810 148366 122 9 191 24 SRX8379509 Unrestricted 16.55 Metagenome 3300040584 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_006-O-20160830-COMP-DNA1 Battelle Memorial Institute 3300040584 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 1965218 5870 19 11 29 16 0.0 Metagenome 3300038439 *Microbiome Permanent Draft Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA - DeMMO2 v2 Argonne National Laboratory 3300038439 Metagenome Analysis Megahit v. 1.0.6.1 Release as per PI request (GOLD-1409) SM 8.16.2021 No Yes lmmomper@gmail.com; maggie@northwestern.edu Caitlin Casar; Magdalena Osburn No Environmental Terrestrial Aquifer Deep subsurface Unclassified terrestrial subsurface fluids 44.350833 -103.765833 7.44 326679984 394143 168 2 239 6 0.0 Metagenome 3300042263 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D56_3 DOE Joint Genome Institute (JGI) 3300042263 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 199391940 303343 136 9 193 14 Unrestricted 62.84 Metagenome 3300043658 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 104-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043658 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.987 -107.0054 549220613 1343189 324 13 618 28 Unrestricted 8.0 Metagenome 3300030093 *Microbiome Permanent Draft Human feces microbial communities from Tubingen, Germany Human feces microbial communities from Tubingen, Germany - A2 University of Tuebingen 3300030093 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 48.52 9.05 43384688 52437 43 0 76 0 0.0 Metagenome 3300043346 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 149-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043346 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9874 -107.0031 511561635 1491362 668 33 1139 54 Unrestricted 7.21 Metagenome 3300039936 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Atlantic Neotropical, PR, USA - GUAN_049-M-20161004-COMP-DNA1 Battelle Memorial Institute 3300039936 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 17.96955 -66.8687 20553651 57613 44 0 74 1 0.0 Metagenome 2040502003 *Microbiome Permanent Draft Marine microbial communities from the Landsort deep, Baltic Sea 80 m water depth Soedertoern University 2040502003 Metagenome Analysis Newbler released per JGI data release policy No Yes petter.thureborn@sh.se Petter Thureborn No Environmental Aquatic Oceanic Marine Unclassified Marine 58.58333333 18.23333333 97114545 241278 109 0 221 0 0.0 Metagenome 7000000140 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 550534656 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000140 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 106511185 185975 0 0 0 0 0.0 Metagenome 3300027149 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepA_8h DOE Joint Genome Institute (JGI) 3300027149 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 159382219 300261 108 11 147 17 SRX5245221 Unrestricted 18.71 Metagenome 3300056698 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.5W.9 SIP fraction DOE Joint Genome Institute (JGI) 3300056698 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 202254372 375961 222 19 336 35 Unrestricted 15.91 Metagenome 3300037427 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 32315 DOE Joint Genome Institute (JGI) 3300037427 Metagenome Analysis metaspades v. 3.13.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Coastal Marine Unclassified seawater 36.7468 -122.0193 3929041289 8793075 1921 540 2980 903 SRX9097226, SRX9097225 Unrestricted 0.0 Metagenome 3300044678 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME29Aug2002-rr0778 DOE Joint Genome Institute (JGI) 3300044678 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 900680460 1436474 346 31 479 51 Unrestricted 15.4 Metagenome 3300003068 *Microbiome Permanent Draft Acid mine drainage microbial communities from Carnoules, Gard, France Acid Mine Drainage microbial communities from Carnoules, Gard, France, bin 3 CEA Genoscope 3300003068 Metagenome Analysis Made public because these are downloaded from Genbank No Yes ipagani@lbl.gov Pelletier,E., Ionna Pagani No Environmental Aquatic Groundwater Freshwater Contaminated Acid mine drainage 43.303 6.188 1407831 1352 1 0 1 0 0.0 Metagenome 3300011654 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01091 Weill Cornell Medical College 3300011654 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.65 -73.94 28888303 46456 21 0 19 0 SRX823046 0.0 Metagenome 3300047401 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Amazon River, Obidos, Brazil - ROCA244 DOE Joint Genome Institute (JGI) 3300047401 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater -1.919 -55.5257 275320874 673422 364 15 610 33 Unrestricted 12.04 Metagenome 3300041756 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_491 MetaG AgResearch, New Zealand, Mosgeil 3300041756 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1379406135 2866641 331 38 1207 60 0.0 Metagenome 3300049652 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought DOE Joint Genome Institute (JGI) 3300049652 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 372236071 846387 532 38 1055 54 Unrestricted 12.83 Metagenome 3300027881 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_27 DOE Joint Genome Institute (JGI) 3300027881 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Inlet Marine Unclassified seawater 50.0528611 -123.8211389 1596251774 3690448 1075 7 1877 14 SRX5244020 Unrestricted 9.58 Metagenome 3300042826 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123 NMDC pilot DOE Joint Genome Institute (JGI) 3300042826 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.920406 -106.94828662 1139166509 2747414 585 15 1132 30 SRX5354618 0.0 Metagenome 3300059688 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2016-0042 DOE Joint Genome Institute (JGI) 3300059688 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.703 -83.254 2007309727 4410800 937 375 1469 572 Unrestricted 0.0 Metagenome 3300021577 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample HABS-E2014-0124-100-LTR Downsampled Assembly University of Michigan 3300021577 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7635 -83.3309 8.042 66345051 110543 35 43 62 38 0.0 Metagenome 3300012505 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.10.yng.090610 DOE Joint Genome Institute (JGI) 3300012505 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 139302599 370936 282 39 596 53 SRX3527434 Unrestricted 0.0 Metagenome 3300038357 *Microbiome Permanent Draft Freshwater sediment microbial communities from Alaska Lake sediment microbial communtites from St. Paul Island, Alaska - PH153_519 University of California, Santa Cruz 3300038357 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Sediment Lake sediment 57.18 -170.25 3134651 8815 1 0 1 0 0.0 Metagenome 3300011950 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00537 Weill Cornell Medical College 3300011950 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -73.91 35912799 54801 17 0 16 0 SRX822504 0.0 Metagenome 3300044816 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_42BD DOE Joint Genome Institute (JGI) 3300044816 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4983 -106.0735 1393625479 2245091 435 60 696 73 SRX20649832 Unrestricted 14.37 Metagenome 3300069609 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from LBJ National Grassland , Southern Plains, TX, USA - CLBJ_002-M-20170411-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069609 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 33.40123 -97.57 10119428 32555 76 4 143 4 0.0 Metagenome 3300035318 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Eunicella verrucosa from Algarve, Portugal - EV04H Euk Molecular Research LP (MR DNA) 3300035318 Metagenome Analysis Metawrap workflow v. 1.0.5 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 3648637 2581 0 2 2 1 0.0 Metagenome 3300057027 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E2L_77_79 DOE Joint Genome Institute (JGI) 3300057027 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9934494 -81.4907807 1080963869 1783088 478 3 838 1 Unrestricted 12.51 Metagenome 3300050274 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_30 DOE Joint Genome Institute (JGI) 3300050274 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.492 160.907 379007706 618537 74 34 82 47 SRX18235916 Restricted 31.16 Metagenome 3300001959 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Mangrove swamp microbial communities from Isabella Island, Equador - GS032 J. Craig Venter Institute (JCVI) 3300001959 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine -0.5938889 -91.06944 89398486 153552 84 1 174 6 0.0 Metagenome 3300025725 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-211 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025725 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.28381 -156.5985 542856770 1066769 372 1 590 3 SRX1990803 Unrestricted 0.0 Metagenome 3300035365 *Microbiome Permanent Draft Fecal microbial communities from lean and fat line chickens in Harbin, China Fecal microbial communities from Fat line chicken in Harbin, China - MGJ20 Inner Mongolia Agricultural University 3300035365 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Birds Large intestine Digestive system Fecal Fecal 45.73 126.73 192205574 312162 284 2 499 5 SRX2066123 0.0 Metagenome 3300040360 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 072_R1_022417 University of Maryland 3300040360 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.53924 19.01614 6505657 11529 19 2 19 2 0.0 Metagenome 3300040742 *Microbiome Permanent Draft Lab enriched deep subsurface rock microbial communities from Deccan Traps, India Lab enriched deep subsurface rock microbial communities from Deccan Traps, India - S1 CeGaT 3300040742 Metagenome Analysis MEGAHIT v. 1.2.9 released by JGI data releasing policy No Yes himaash2007@gmail.com HIMADRI BOSE No Environmental Terrestrial Rock Deep subsurface Unclassified deep subsurface rock 22.318 87.3115 7 1590 9751550 10332 8 0 13 0 0.0 Metagenome 3300024956 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 91_HOW11 (SPAdes) DOE Joint Genome Institute (JGI) 3300024956 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 89525525 130538 44 0 45 0 SRX2721163 Unrestricted 0.0 Metagenome 3300049021 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - C19_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049021 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 325559128 792942 485 9 913 18 Unrestricted 0.0 Metagenome 3300035559 *Microbiome Permanent Draft Metagenomes from methanogenic octacosane-degrading microbial community from a gas condensated-contaminated aquifer Lab-enriched alluvial aquifer microbial community from South Platte River Basin near Fort Lupton, Colorado, USA - C28 mgh University of Calgary 3300035559 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Lab enrichment Anaerobic media Defined media Unclassified Aquifer 40.3921 -104.7158 62770355 72196 28 0 39 0 0.0 Metagenome 3300050493 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation DOE Joint Genome Institute (JGI) 3300050493 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Host-associated Plants Endosphere Roots Unclassified Populus endosphere 35.8444 -83.9599 1834729917 4425652 1868 28 3166 42 SRX2840056 0.0 Metagenome 3300041516 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Bulk soil microbial community from Lincoln, Canterbury, New Zealand - BS17_4 MetaG AgResearch, New Zealand, Mosgeil 3300041516 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Environmental Terrestrial Unclassified Soil Agricultural land Dairy farm pasture soil -43.648506 172.343549 527300070 1149406 158 27 544 67 0.0 Metagenome 3300001685 *Microbiome Permanent Draft Marine microbial communities from the Santa Barbara Channel oil seeps Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 2 DOE Joint Genome Institute (JGI) 3300001685 Metagenome Analysis SOAPdenovo v1.05, Newbler v2.5, minimus2 Yes Yes mhess@lbl.gov, mhess@ucdavis.edu Matthias Hess Yes 25197496 Environmental Aquatic Oil seeps Marine Unclassified Marine 34.39192 -119.84578 495862225 1143552 520 12 866 9 SRX802075 Unrestricted 0.0 Metagenome 3300007363 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA DOE Joint Genome Institute (JGI) 3300007363 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 634177038 1818555 457 5 805 10 SRX2751897 Unrestricted 0.0 Metagenome 3300012446 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100476 University of Pennsylvania 3300012446 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 7946856 21735 12 0 27 0 SRX756522 0.0 Metagenome 3300069415 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_049-O-20170621-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069415 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 17749139 55591 124 31 252 51 0.0 Metagenome 3300006842 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT237_1_0025m University of Hawaii 3300006842 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 114862101 183884 195 10 285 17 0.0 Metagenome 3300025239 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0556 (SPAdes) DOE Joint Genome Institute (JGI) 3300025239 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -26.91 -21.43 95164097 196941 97 6 158 9 SRX1982930 Unrestricted 0.0 Metagenome 3300036836 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_July_plot3_rep1 DOE Joint Genome Institute (JGI) 3300036836 Metagenome Analysis metaspades v. 3.13.0 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6591 -80.6279 1770401222 3001438 656 12 1228 32 SRX8179616 Unrestricted 13.95 Metagenome 3300007024 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 158458797 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007024 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 15280144 30674 23 2 39 0 0.0 Metagenome 3300000277 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM208 Beijing Genomics Institute (BGI), Macrogen 3300000277 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 42651994 45840 134 0 180 0 0.0 Metagenome 3300032137 *Microbiome Permanent Draft Rhizosphere microbial communities from salt marsh grasses in Alabama, United States Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC DOE Joint Genome Institute (JGI) 3300032137 Metagenome Analysis spades v. 3.12.0 Yes Yes omason@fsu.edu Olivia Mason No Host-associated Plants Rhizosphere Roots Unclassified rhizosphere 30.2619 -88.2383 627538688 1470764 550 7 981 11 SRX5821835 Unrestricted 8.88 Metagenome 3300070436 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_002-O-20170731-COMP-DNA1 3300070436 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 63869003 187171 112 46 257 63 0.0 Metagenome 3300027607 *Microbiome Permanent Draft Marine cyanobacterial communities from Panama, similar to Oscillatoria species Marine cyanobacterial communities from Panama - species 1 Leptolyngbya sp. (SPAdes) DOE Joint Genome Institute (JGI) 3300027607 Metagenome Analysis spades v. 3.11.1 Yes Yes lgerwick@ucsd.edu Lena Gerwick No Environmental Aquatic Unclassified Marine Unclassified Marine 9.28 -79.97 530403628 721555 192 10 271 14 SRX8048359, SRX8048358 Unrestricted 0.0 Metagenome 3300006259 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765034022 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006259 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 141558891 197787 124 0 133 0 0.0 Metagenome 3300027488 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepA_8d DOE Joint Genome Institute (JGI) 3300027488 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 142548013 280720 136 7 197 14 SRX5245187 Unrestricted 15.08 Metagenome 3300069468 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_002-M-20170801-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069468 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 61604660 190861 207 6 365 17 0.0 Metagenome 3300016461 *Microbiome Permanent Draft Continental margin sediment microbial communities from various locations Continental margin sediment microbial communities from North Pacific Ocean - ANME2c_DSS_Sorted DOE Joint Genome Institute (JGI) 3300016461 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rcolwell@coas.oregonstate.edu; michaelgraw@gmail.com Frederick Colwell; Michael Graw No Environmental Aquatic Continental margin Marine Sediment Continental margin sediment 47.5233 -125.0078 735816303 1315958 35 21 50 46 SRX3048160, SRX3048159 Unrestricted 0.0 Metagenome 3300038585 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - TUL3 Michigan State University 3300038585 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 26.653333 -121.296667 47254643 129285 1 0 0 0 0.0 Metagenome 3300027991 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK24 DOE Joint Genome Institute (JGI) 3300027991 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 89745250 255831 241 25 439 34 SRX5245475 Unrestricted 7.83 Metagenome 3300005595 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF47B DOE Joint Genome Institute (JGI) 3300005595 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 589070361 1638619 351 167 569 309 SRX2781818 Unrestricted 0.0 Metagenome 3300029337 *Microbiome Permanent Draft Human fecal microbial communities from healthy and liver cirrhosis patients in Hangzhou, China Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-22_Run5 Zhejiang University 3300029337 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 30.0 120.0 220038957 309600 168 0 289 0 0.0 Metagenome 3300045978 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P11SSC1_191119_i DOE Joint Genome Institute (JGI) 3300045978 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 1829176855 2693561 529 2 746 5 SRX20651021 Unrestricted 13.63 Metagenome 2035918003 *Microbiome Permanent Draft Mountain Pine Beetle microbial communities from Alberta and British Columbia, Canada Mountain Pine Beetle microbial communities from McBride, British Columbia, Canada - Lodgepole pine DOE Joint Genome Institute (JGI) 2035918003 Metagenome Analysis Newbler No Yes gsuen@wisc.edu Garret Suen Yes 25406380 Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Mountain Pine Beetle 53.304672 -120.319233 58839471 87336 21 0 39 0 0.0 Metagenome 3300037119 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil viral communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 24_7.5_V_3 DOE Joint Genome Institute (JGI) 3300037119 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1863 -2.2145 702213639 1796569 11 3 18 6 SRX8234721 Unrestricted 39.52 Metagenome 3300009081 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 DOE Joint Genome Institute (JGI) 3300009081 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wilkins.231@osu.edu, mike.wilkins@colostate.edu Michael Wilkins No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0956 -99.1001 1049920163 2257102 912 37 1754 56 SRX2753780 Unrestricted 0.0 Metagenome 3300039285 *Microbiome Draft Fumarole sediment bacterial commnuities from geothermic field Los Azufres, Michoacan, Mexico Fumarole sediment bacterial commnuities from Los Azufres Spa, Michoacan, Mexico - B Macrogen Inc 3300039285 Metagenome Analysis SPAdes v. 3.8 released by JGI data releasing policy No Yes hhbolivart@unal.edu.co Hermes Hernan Bolivar-Torres No Environmental Terrestrial Fumaroles Volcanic Unclassified Fumarole sediment 19.7816 -100.6577 161864249 208058 94 8 104 13 0.0 Metagenome 3300031995 *Microbiome Permanent Draft Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 DOE Joint Genome Institute (JGI) 3300031995 Metagenome Analysis spades v. 3.12.0 Yes Yes agaudin@ucdavis.edu Amelie Gaudin No Host-associated Plants Rhizosphere Roots Soil rhizosphere 38.5 -121.7 5630144328 14028848 2770 150 4779 232 SRX5799627 Unrestricted 9.08 Metagenome 3300021442 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015 DOE Joint Genome Institute (JGI) 3300021442 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.6907 -122.3448 775759192 1998701 593 128 985 238 SRX4010486 Unrestricted 16.02 Metagenome 3300031420 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLSB.R1 DOE Joint Genome Institute (JGI) 3300031420 Metagenome Analysis spades v. 3.12.0 Yes Yes icelab@berkeley.edu Steven Lindow No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 37.8864 -122.2981 1050342125 1854814 472 62 667 78 SRX5658573 Unrestricted 49.32 Metagenome 3300042398 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME12Jul2011-rr0862 DOE Joint Genome Institute (JGI) 3300042398 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 668253678 1062313 287 34 387 45 Unrestricted 21.77 Metagenome 3300023114 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_3_MG DOE Joint Genome Institute (JGI) 3300023114 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Inlet Marine Unclassified seawater 48.64 -123.5 529526471 1568289 732 140 1308 185 SRX4480134 Unrestricted 9.31 Metagenome 3300000311 *Microbiome Draft Wetland microbial communities from Twitchell Island in the Sacramento Delta Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk v3 (version 3) DOE Joint Genome Institute (JGI) 3300000311 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes stringe@lbl.gov Susannah Tringe Yes 25991679 Environmental Aquatic Wetlands Marine Sediment Wetland 38.107057 -121.647578 243213055 583100 576 5 922 11 Unrestricted 0.0 Metagenome 3300021224 *Microbiome Permanent Draft Environmental DNA from river Freshwater microbial communities from Jinzu River in Toyama Prefecture, Japan-20170104_3, permeate Toyama Prefectural University 3300021224 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic River Freshwater Unclassified freshwater 36.70387 137.20502 40576771 91259 7 1 28 0 0.0 Metagenome 3300028877 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3 DOE Joint Genome Institute (JGI) 3300028877 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 1090771969 2398315 223 18 333 37 SRX5355878 Unrestricted 0.0 Metagenome 3300005376 *Microbiome Permanent Draft Human periodontal pocket microbial communities from Stanford, California, USA Human periodontal pocket microbial communities from Stanford, California, USA - TM7a Stanford University 3300005376 Metagenome Analysis Newbler and Forge Assembly No Yes JGI automated process Yes 17620602 Host-associated Mammals: Human Oral cavity Digestive system Periodontal pockets Human oral 37.429308 -122.169514 2514184 6864 8 0 6 0 0.0 Metagenome 3300070800 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_005-M-20190729-COMP-DNA1 3300070800 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 17947454 54119 84 21 135 32 0.0 Metagenome 3300026204 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV47 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026204 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 361841325 701132 264 3 348 7 SRX2781819 Unrestricted 0.0 Metagenome 7000000441 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 763435843 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000441 Metagenome Analysis No Yes ipagani@lbl.gov Ionna Pagani No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 90021877 133295 0 0 0 0 0.0 Metagenome 3300006091 *Microbiome Finished Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 - sample NBP125 Major University, Chile 3300006091 Metagenome Analysis IDBA-UD in reveiw for publication No Yes oulloa@udec.cl Osvaldo Ulloa Yes 29575531 Environmental Aquatic Oceanic Marine Unclassified Marine -13.71 -81.389 156059324 360301 175 5 263 8 0.0 Metagenome 3300027862 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027862 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 1461737819 3226270 728 17 1295 30 SRX2933635 Unrestricted 0.0 Metagenome 3300000103 *Microbiome Draft Passalidae beetle gut microbial communities from Costa Rica Passalidae beetle gut microbial communities from Costa Rica -Larvae (5ML+5BL) v1 DOE Joint Genome Institute (JGI) 3300000103 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes davidhs@lsi.umich.edu, davidhs@umich.edu David Sherman No Host-associated Arthropoda: Insects Gut Larva Unclassified Passalidae beetle gut 10.207151 -84.007673 77567223 206349 218 10 433 17 Unrestricted 0.0 Metagenome 3300027570 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027570 Metagenome Analysis spades v. 3.11.1 Yes Yes loy@microbial-ecology.net; Michael.Pester@dsmz.de Alexander Loy; Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.1318 11.881 380940720 761698 118 1 192 2 Unrestricted 0.0 Metagenome 7000000579 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159551223 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000579 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 159439170 266560 0 0 0 0 0.0 Metagenome 3300026343 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_02_40cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026343 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 595700915 1002588 334 12 503 20 SRX2727968 Unrestricted 0.0 Metagenome 3300022435 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1OPP2 JM101 AGRF 3300022435 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 45889068 74712 37 0 57 0 0.0 Metagenome 3300023241 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #474 DOE Joint Genome Institute (JGI) 3300023241 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 176108874 319234 120 0 176 0 SRX4396804 Unrestricted 17.03 Metagenome 3300026924 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -Nitrogen NN332 (SPAdes) DOE Joint Genome Institute (JGI) 3300026924 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 5000550 16928 54 4 96 13 SRX3311729 Unrestricted 0.0 Metagenome 3300065529 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 806 in Chinook, Alberta, Canada - S00JY_0143 Microbiome Insights 3300065529 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.26457862 -110.5952179 15277689 22446 17 1 32 1 0.0 Metagenome 3300025656 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_200m (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025656 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 408891081 813477 275 22 409 36 Unrestricted 0.0 Metagenome 3300048816 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 P3 10-14 DOE Joint Genome Institute (JGI) 3300048816 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3535 19.0473 650610506 955334 159 16 225 27 Restricted 12.09 Metagenome 3300027125 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepB_8h DOE Joint Genome Institute (JGI) 3300027125 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 101499711 204617 102 11 141 8 SRX5245219 Unrestricted 20.87 Metagenome 3300029459 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001849-99 Beijing Genomics Institute (BGI) 3300029459 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 96362334 113429 86 0 105 0 0.0 Metagenome 3300034357 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME12May2017-rr0187 DOE Joint Genome Institute (JGI) 3300034357 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1589300795 2942319 479 125 712 188 SRX7622346 Unrestricted 9.73 Metagenome 3300017618 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - SX13-11 University of Michigan 3300017618 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.56518 -85.61352 7513657 12073 2 0 6 0 0.0 Metagenome 3300029824 *Microbiome Permanent Draft Liquor fermentation pit mud microbial communities from Chongqing University, China Liquor fermentation pit mud microbial communities from Chengdu, China - Meta-7-1-30-B Chongqing University 3300029824 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Engineered Bioreactor Unclassified Unclassified Unclassified Fermentation pit mud 30.65 104.06 14601299 24302 18 0 39 0 SRX691281 0.0 Metagenome 3300000524 *Microbiome Permanent Draft Bovine rumen microbial communities from New Zealand Bovine rumen microbial communities from New Zealand - Cows 722+723 Adherent AgResearch Limited 3300000524 Metagenome Analysis Released per request from Milica Ciric - March 10 2014 No Yes christina.moon@agresearch.co.nz Christina Moon No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -40.35 175.61 0 0 0 0 0 0 0.0 Metagenome 3300017665 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - LG13-12 University of Michigan 3300017665 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.76324 -84.405 23749519 28488 10 0 9 0 0.0 Metagenome 3300011383 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01024 Weill Cornell Medical College 3300011383 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.68 -73.82 15262273 20576 9 0 10 0 SRX822986 0.0 Metagenome 3300036642 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0817S20re DOE Joint Genome Institute (JGI) 3300036642 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0388 54795287 97681 38 0 83 0 SRX8670434 Unrestricted 40.24 Metagenome 3300026620 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_10_12 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026620 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 17854049 24842 26 0 30 1 SRX2752461 Unrestricted 0.0 Metagenome 3300054039 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10 re-annotation DOE Joint Genome Institute (JGI) 3300054039 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 1018858889 2184457 508 28 962 61 SRX3960036 0.0 Metagenome 3300041494 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG AgResearch, New Zealand, Mosgeil 3300041494 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Unclassified Roots Unclassified White clover root -43.648506 172.343549 1135677800 2288410 259 65 1004 143 0.0 Metagenome 3300006169 *Microbiome Permanent Draft Termite nest microbial communities from Madurai, India Termite nest microbial communities from Madurai, India BGI Tech Solutions Co., Ltd. 3300006169 Metagenome Analysis Mega Hit released per JGI data release policy No Yes manjubtek@gmail.com Manjula Arumugam No Environmental Terrestrial Unclassified Soil Unclassified Termite nest 9.941418 78.008896 895587468 1483719 428 20 794 30 0.0 Metagenome 3300017957 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300017957 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1719781338 3733952 1428 108 2376 169 SRX4071814 Unrestricted 17.52 Metagenome 3300028956 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 45_4M Beijing Genomics Institute (BGI) 3300028956 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 33650946 36521 24 0 31 0 ERX491144 0.0 Metagenome 3300006636 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-two DOE Joint Genome Institute (JGI) 3300006636 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.299 -156.61 444898215 1457463 465 35 906 60 SRX2901268 Unrestricted 0.0 Metagenome 3300022589 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Bagasse, Gen0, Rep 2, Chloramphenicol (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022589 Metagenome Analysis spades v. 3.11.1-check Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4148 -119.8405 1674336836 3024736 2201 52 3102 96 SRX3963290 Unrestricted 15.92 Metagenome 3300031885 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36 DOE Joint Genome Institute (JGI) 3300031885 Metagenome Analysis spades v. 3.12.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.508 -110.3268 1945820785 3813076 1006 12 1581 12 SRX6380912 Unrestricted 16.3 Metagenome 3300042799 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S2_40_50 NMDC pilot DOE Joint Genome Institute (JGI) 3300042799 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228379 -119.2717467 85731750 235453 206 2 384 4 SRX2523285 0.0 Metagenome 3300025348 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Section #2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025348 Metagenome Analysis spades v. 3.11.1 Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.973481 -119.476345 62626105 104451 98 16 141 20 SRX3311901 Unrestricted 0.0 Metagenome 3300051020 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA River water microbial communities from Olympic Peninsula, Washington, USA - W_RHK2_D15 DOE Joint Genome Institute (JGI) 3300051020 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Aquatic River Freshwater Unclassified River water 48.153 -124.211 354422174 607865 179 28 289 48 Unrestricted 92.55 Metagenome 3300007298 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 160603188 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007298 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 150744950 206184 164 3 260 2 0.0 Metagenome 3300006187 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_500_plan - 1398105537976 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300006187 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919, 28386012 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 477868214 945742 285 93 364 103 SRX2705195, SRX2705194 Unrestricted 0.0 Metagenome 3300021600 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L626-11m DOE Joint Genome Institute (JGI) 3300021600 Metagenome Analysis spades v. 3.11.1-check Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.753 -93.798 566477546 1287919 443 51 716 93 SRX3984577 Unrestricted 51.23 Metagenome 3300022567 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 14 Selected contigs with viral hallmark genes Autonomous University of Barcelona 3300022567 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 1098202 1714 0 0 0 0 0.0 Metagenome 3300016482 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water catchment in Singapore - WC_Site 2c, Aug Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016482 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 1.35 103.87 104940139 138357 31 4 21 4 0.0 Metagenome 3300044704 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_27BS DOE Joint Genome Institute (JGI) 3300044704 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.3761 -106.1002 876631813 1455584 320 38 456 57 SRX20650040 Unrestricted 13.73 Metagenome 3300020456 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100001741 (ERX555984-ERR599123) CEA Genoscope 3300020456 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 31.8366 -64.109 1287152480 3204384 661 80 1284 149 0.0 Metagenome 3300069374 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Ozarks Complex, AL, USA - LENO_062-M-20160830-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069374 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.85388 -88.16122 71878802 216464 156 4 278 10 0.0 Metagenome 3300014606 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -PFALL34 Weill Cornell Medical College 3300014606 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.73 -73.98 27219928 40205 15 0 27 0 SRX823460 0.0 Metagenome 3300013498 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00492 Weill Cornell Medical College 3300013498 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.84 -73.88 39145190 59995 13 0 17 0 SRX822461 0.0 Metagenome 3300002886 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm DOE Joint Genome Institute (JGI) 3300002886 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 168957454 433967 288 51 578 67 SRX2563716 Unrestricted 0.0 Metagenome 2170459002 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm 454 Life Sciences 2170459002 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.804241 -0.372114 356103673 962290 240 24 474 52 0.0 Metagenome 3300013981 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00556 Weill Cornell Medical College 3300013981 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.67 -73.95 9723279 14225 10 0 21 0 SRX822523 0.0 Metagenome 3300025404 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_10_10 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025404 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 118173958 275529 96 13 192 22 SRX3003284 Unrestricted 0.0 Metagenome 3300025942 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025942 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 3657747409 8835007 1784 119 3100 206 SRX2832622 Unrestricted 0.0 Metagenome 3300045219 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_5_F DOE Joint Genome Institute (JGI) 3300045219 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 153241124 192478 102 1 122 2 Unrestricted 76.22 Metagenome 3300035495 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver stomach microbial communities from Maple Ridge, British Columbia, Canada - Beaver1Stomach1 DOE Joint Genome Institute (JGI) 3300035495 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Stomach Digestive system Unclassified stomach 49.18 -122.54 776981422 1470744 927 36 1424 39 SRX8344119 Unrestricted 8.62 Metagenome 3300042882 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Nov2016-rr0348 DOE Joint Genome Institute (JGI) 3300042882 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 783152902 1167150 297 87 378 97 Unrestricted 20.37 Metagenome 3300019381 *Microbiome Finished Freshwater microbial communities from Serido River, Parelhas, Brazil - Caseiro Freshwater microbial communities from Serido River, Parelhas, Brazil - Caseiro Federal University of Rio Grande do Norte 3300019381 Metagenome Analysis Geneious released by JGI data releasing policy No Yes marzinha1@gmail.com Marbella Fonseca No Environmental Aquatic River Freshwater Unclassified freshwater -6.6855 -36.6593 891810601 3205301 4203 2 6769 1 0.0 Metagenome 3300050024 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 E3 10-14 DOE Joint Genome Institute (JGI) 3300050024 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3532 19.0469 804237318 1180642 296 12 463 15 Restricted 12.99 Metagenome 3300001520 *Microbiome Permanent Draft Sheep rumen microbial communities from New Zealand from high and low methane emitting sheep Sheep rumen microbial communities from New Zealand - Rank44_high DOE Joint Genome Institute (JGI) 3300001520 Metagenome Analysis Velvet Released because these are assemblies from SRA data No Yes janine.kamke@agresearch.co.nz, janine.kamke@uni-wuerzburg.de Janine Kamke No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen -40.352 175.608 165851437 357289 666 43 978 76 0.0 Metagenome 3300022402 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1BM2 JM113 AGRF 3300022402 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 44813625 81491 24 1 50 2 0.0 Metagenome 3300045884 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P11SSC1_191119_f DOE Joint Genome Institute (JGI) 3300045884 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 946425624 1410781 273 0 439 0 SRX20650703 Unrestricted 11.71 Metagenome 3300063974 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 586 in LaCrete, Alberta, Canada - S00JY_0080 Microbiome Insights 3300063974 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 58.01130917 -116.1709417 6.19-6.2 109404914 157998 54 3 91 1 0.0 Metagenome 3300049271 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA22 DOE Joint Genome Institute (JGI) 3300049271 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 409748177 1012737 523 9 959 16 Unrestricted 8.06 Metagenome 3300040490 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_043-M-20160815-COMP-DNA1 Battelle Memorial Institute 3300040490 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 3714809 11298 17 1 35 3 0.0 Metagenome 3300036956 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - 9S-II DOE Joint Genome Institute (JGI) 3300036956 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 1043002969 2149730 968 142 1416 215 SRX8361114 Unrestricted 8.28 Metagenome 3300053172 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S32_B_D45 hydrophilic DOE Joint Genome Institute (JGI) 3300053172 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 341275498 550762 161 17 225 27 Restricted 0.0 Metagenome 3300022323 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Garden Lake, Rottnest Island (WA - Australia) - GL1GP3 JM45 AGRF 3300022323 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.995604 115.536873 18856303 40156 31 0 50 0 0.0 Metagenome 3300014530 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 511_4M Beijing Genomics Institute (BGI) 3300014530 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 95510007 103012 49 0 53 0 ERX491161 0.0 Metagenome 3300038620 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site1_salt_MV_0 DOE Joint Genome Institute (JGI) 3300038620 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Tidal flats microbial mat 20.7609 58.6478 695752883 986916 225 13 316 30 SRX9169490 Unrestricted 57.11 Metagenome 3300025062 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from Cariaco Basin, Caribbean Sea - 25_WHOI_OMZ (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025062 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 10.847 -65.114 118621493 182150 58 0 56 0 SRX2929261 Unrestricted 0.0 Metagenome 3300035200 *Microbiome Permanent Draft Sediment microbiome project Sediment microbial communities from wetland pond in Xixi Nat. Park in Hangzhou, Zhejiang, China - 12 Beijing Genomics Institute (BGI) 3300035200 Metagenome Analysis megahit v. 1.1.3 released by JGI data releasing policy No Yes 17826834892@163.com wang binhao No Environmental Aquatic Pond Freshwater Sediment sediment 30.268 120.04 1182661409 1565472 342 24 453 26 0.0 Metagenome 3300002255 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP07-MA 3300002255 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300040205 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_002-M-20170801-COMP-DNA1 Battelle Memorial Institute 3300040205 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 9987246 30107 90 3 145 6 0.0 Metagenome 3300011529 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00851 Weill Cornell Medical College 3300011529 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -73.99 22473175 32780 13 0 20 0 SRX822817 0.0 Metagenome 3300010011 *Microbiome Permanent Draft Draft genomes reconstructed from beer lees fermenting consortia Beer lees fermenting microbial communities from anaerobic reactor in biotech lab of the University of Hong Kong, China - sample2_75d Beijing Genomics Institute (BGI) 3300010011 Metagenome Analysis CLCBio released per JGI data release policy No Yes irenelambiel@gmail.com Yubo Wang No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic reactor 22.3964 114.1095 92889813 106492 19 0 28 0 0.0 Metagenome 3300032051 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26 DOE Joint Genome Institute (JGI) 3300032051 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 735566906 1783595 368 7 602 9 SRX5820070 Unrestricted 11.56 Metagenome 3300064954 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 740 in Bashaw, Alberta, Canada - S00JY_0439 Microbiome Insights 3300064954 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.40477497 -112.5728765 257731486 363517 92 1 130 2 0.0 Metagenome 3300022064 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 29 SPOT_SRF_2011-12-20 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022064 Metagenome Analysis spades v. 3.11.1-check Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 7368312 24608 8 1 22 4 SRX5471783, SRX5471782, SRX5471781 Unrestricted 0.0 Metagenome 3300004820 *Microbiome Permanent Draft Chicken cecum microbial communities from Brno, Czech Republic, of chickens treated with various antibiotics Chicken cecum microbial communities from Brno, Czech Republic, of chickens treated with various antibiotics - Non treated Masaryk University 3300004820 Metagenome Analysis IDBA released per JGI data release policy No Yes djurdjica.marosevic@gmail.com Durdica Marosevic No Host-associated Birds Large intestine Digestive system Ceca chicken cecum 49.19522 16.60796 13322752 30842 37 2 51 3 0.0 Metagenome 3300043711 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - Rondonia_Forest_3_A10cm DOE Joint Genome Institute (JGI) 3300043711 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.142 -62.882 1103988101 3056932 599 11 1148 11 Unrestricted 8.6 Metagenome 3300013474 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - sediment SCG76 University of British Columbia 3300013474 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Sediment Marine 150881 452 0 0 4 0 SRX143185 0.0 Metagenome 3300013293 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Aquatic prokaryotic and eukaryotic communities from a canal in New York, USA: aquatic canal water -GCSS-13 Weill Cornell Medical College 3300013293 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Unclassified Canal Unclassified Aquatic canal 40.67 -73.99 101482816 289827 122 4 256 10 SRX823487 0.0 Metagenome 3300001839 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM40, ROCA_DNA238_2.0um_Ob_C_3b 3300001839 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Lotic Freshwater Unclassified Marine plankton -1.919017 -55.525717 75535628 184998 22 11 85 14 0.0 Metagenome 3300048990 *Microbiome Permanent Draft Marine and freshwater sediment microbial communities from various locations Marine sediment microbial communities from Caspian Sea - Caspian_Core_2_32-35_cm DOE Joint Genome Institute (JGI) 3300048990 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes smtechtm@mtu.edu Stephen Techtmann No Environmental Aquatic Sediment Marine Unclassified Marine sediment 39.9902 51.5008 719909026 1597036 544 0 876 1 Unrestricted 8.36 Metagenome 3300069398 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - NIWO_042-M-20160828-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069398 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.05425 -105.58237 8226100 27309 53 2 68 8 0.0 Metagenome 3300056708 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.4C.7 SIP fraction DOE Joint Genome Institute (JGI) 3300056708 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 170781570 333330 105 1 171 6 Unrestricted 16.49 Metagenome 3300067030 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from Gulf of California, Mexico - CTD-FK190211-18-72m-0.1 DOE Joint Genome Institute (JGI) 3300067030 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 27.01072 -111.40693 786486655 1364297 337 2 506 0 Restricted 0.0 Metagenome 3300015076 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Storglaciaren, Tarfala, Sweden (Sample st-6a, vegetation/snow interface) University of Bristol 3300015076 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.865505 16.714941 6.3 83396680 192473 137 14 201 22 0.0 Metagenome 3300014829 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A10_35cm_6M University of Tennessee 3300014829 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 279492801 758212 77 2 167 5 SRX710600 0.0 Metagenome 3300007274 *Microbiome Permanent Draft Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia - TJ13 time point Australian Centre for Ecogenomics 3300007274 Metagenome Analysis CLC released per JGI data release policy No Yes crinke@lbl.gov Christian Rinke No Environmental Aquatic Coastal Marine Unclassified marine surface water -34.1192 151.2267 110685581 142718 35 7 31 5 0.0 Metagenome 3300011830 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00070 Weill Cornell Medical College 3300011830 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.63 -73.96 47708594 63097 13 6 23 6 SRX822070 0.0 Metagenome 3300031256 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1603-10 DOE Joint Genome Institute (JGI) 3300031256 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh sediment 42.722 -70.847 621653564 1229779 405 2 670 5 SRX6468615 Unrestricted 11.48 Metagenome 3300045690 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_2_A DOE Joint Genome Institute (JGI) 3300045690 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 161717726 195732 104 1 113 2 Unrestricted 99.21 Metagenome 3300020220 *Microbiome Permanent Draft Freshwater microbial communities from Lake Tanganyika, Tanzania Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015018 Mahale Deep Cast 100m DOE Joint Genome Institute (JGI) 3300020220 Metagenome Analysis spades v. 3.10.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater lake -6.1786 29.658 1951145379 3322972 723 62 1112 78 SRX3984085 Unrestricted 31.88 Metagenome 3300030242 *Microbiome Permanent Draft Acid mine drainage microbial biofilm communities from Richmond Mine, California, USA Acid mine drainage biofilm communities from Richmond mine site AB20, Iron Mt, CA, USA - AMDAB200606DS3 University of California, Berkeley 3300030242 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 40.67542 -122.53025 34461797 47464 21 1 30 4 0.0 Metagenome 3300032176 *Microbiome Permanent Draft Microbial communities from the deep biosphere Hydrothermal vent fluid microbial communities from Atlantic Lost City Hydrothermal Field, Atlantic Ocean - LC_HO8_2_2 re-assembly Marine Biological Laboratory 3300032176 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.124051 -42.120113 255018991 622963 200 7 353 19 0.0 Metagenome 3300051329 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water viral communities from Sandhills, Nebraska, United States - NSL_Bean_2020_V DOE Joint Genome Institute (JGI) 3300051329 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.7748 -102.5295 401122724 1063049 50 0 65 1 Unrestricted 75.56 Metagenome 3300000236 *Microbiome Draft Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- FS08_3 v1 DOE Joint Genome Institute (JGI) 3300000236 Metagenome Analysis released based on JGI ITS Yes Yes jlm80@psu.edu Jennifer Macalady Yes 25620962 Environmental Aquatic Groundwater Freshwater Cave water Groundwater 43.383333 12.95 181303868 400347 407 25 727 45 Unrestricted 0.0 Metagenome 3300002810 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A5a-12 DOE Joint Genome Institute (JGI) 3300002810 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 1300228 4329 43 2 85 7 SRX1991308 Unrestricted 0.0 Metagenome 3300008128 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159713063 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008128 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 96914932 137592 65 0 88 1 0.0 Metagenome 3300027797 *Microbiome Permanent Draft Freshwater and sediment microbial communities from a dead zone in Lake Erie, USA Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027797 Metagenome Analysis spades v. 3.11.1 Yes Yes rmmckay@bgsu.edu Robert M. McKay No Environmental Aquatic Lentic Freshwater Hypolimnion Freshwater and sediment 41.77 -81.73 1030765032 1836846 359 127 453 161 SRX3311442 Unrestricted 0.0 Metagenome 3300070477 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_029-M-20200708-COMP-DNA1 Battelle Memorial Institute 3300070477 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 29.692504 -81.989891 5.19-5.49 21971026 69975 54 4 96 10 0.0 Metagenome 3300048694 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Congo - River, Brazzaville, Congo - CONGO_067 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300048694 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater -4.3092 15.2356 547048223 1338489 654 110 1227 165 Unrestricted 0.0 Metagenome 3300042992 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME26Jun2014-rr0415 DOE Joint Genome Institute (JGI) 3300042992 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 853686321 1313302 268 30 362 48 Unrestricted 21.05 Metagenome 3300042374 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06Jul2016-rr0461 DOE Joint Genome Institute (JGI) 3300042374 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 942694523 1438575 313 75 405 92 Unrestricted 25.45 Metagenome 3300055095 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_1-s30 day 365 DOE Joint Genome Institute (JGI) 3300055095 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1915095272 2771458 394 210 478 221 Unrestricted 40.17 Metagenome 3300015282 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_31MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015282 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 126214723 231976 9 31 24 28 SRX3922906 Unrestricted 11.44 Metagenome 3300012819 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched pill bug-associated microbial communities from UW Madison campus, WI, USA - HID1972K_E11 MG DOE Joint Genome Institute (JGI) 3300012819 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 79106640 110916 80 2 127 4 SRX3564673 Unrestricted 0.0 Metagenome 3300030424 *Microbiome Permanent Draft Deep subsurface porewater microbial communities from Mt Terri URL, St-Ursanne, Switzerland Deep subsurface porewater microbial communities from Mt Terri URL, St-Ursanne, Switzerland - BRH_30 Swiss Federal Institute of Technology in Lausanne 3300030424 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Groundwater Freshwater Unclassified Deep subsurface porewater 47.37892341 7.16496703 142455921 201240 102 1 125 0 0.0 Metagenome 3300036877 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-1-D DOE Joint Genome Institute (JGI) 3300036877 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0474 480389355 770313 146 6 174 8 SRX8137204 Unrestricted 17.2 Metagenome 3300045994 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Microbial mat bacterial communities from riparian zone, North Slope, Alaska, United States - OKS_BSeep2D_28June2019 DOE Joint Genome Institute (JGI) 3300045994 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes demerson@bigelow.org David Emerson No Environmental Terrestrial Unclassified Soil Riparian soil riparian zone microbial mat 68.6721 -149.1359 1353253083 2342132 924 289 1548 381 Unrestricted 22.11 Metagenome 3300012284 *Microbiome Permanent Draft Beach sand microbial communities from Municipal Pensacola Beach, Florida Beach sand microbial communities from Municipal Pensacola Beach, Florida - OS-S2 Georgia Institute of Technology 3300012284 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Terrestrial Sand Soil Unclassified Beach sand 30.3262 -87.1745 276351076 664301 199 1 340 6 SRX695904 0.0 Metagenome 3300001083 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 DOE Joint Genome Institute (JGI) 3300001083 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 29759307 94198 114 9 202 23 SRX3312033 Unrestricted 0.0 Metagenome 3300043551 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime ecozone, Canada - Lake 07-223 Genome Quebec 3300043551 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.716514 -63.228122 1024656267 2353079 412 55 679 128 0.0 Metagenome 3300001175 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 DOE Joint Genome Institute (JGI) 3300001175 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 88658279 223071 155 30 268 50 SRX3312093 Unrestricted 0.0 Metagenome 3300028295 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS379 with 0.8UM filter - spades JGI facility at Oak Ridge National Laboratory 3300028295 Metagenome Analysis Spades v. 3.11.1 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 25363252 46569 25 2 26 2 0.0 Metagenome 3300038343 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A20_5cm_0.25M University of Tennessee 3300038343 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 102710080 239962 135 5 247 11 SRX710569 0.0 Metagenome 2088090023 *Microbiome Permanent Draft Rumen microbial communities of musk oxen from Alaska Sample MXFH National Research Council of Canada 2088090023 Metagenome Analysis released per Rekha No Yes robert.forster@agr.gc.ca Robert Forster No Host-associated Mammals Stomach Digestive system Rumen Rumen 64.880776 -147.869984 86883302 241601 253 11 428 0 0.0 Metagenome 3300047355 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_170309.NP2 DOE Joint Genome Institute (JGI) 3300047355 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 708826363 1473271 427 79 607 135 Unrestricted 16.76 Metagenome 3300028400 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in the Atlantic and Pacific Ocean Hydrothermal vent microbial communities from Lau Basin, Pacific Ocean - 134-614 DOE Joint Genome Institute (JGI) 3300028400 Metagenome Analysis spades v. 3.11.1 Yes Yes pgirguis@oeb.harvard.edu Peter Girguis No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent -21.9879 -176.5676 762786935 1402025 667 10 959 11 SRX5246485 Unrestricted 17.34 Metagenome 3300056591 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf microbial communities from Olympic Peninsula, Washington, USA - D0_RHK1_1 DOE Joint Genome Institute (JGI) 3300056591 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Alder tree leaf 48.154 -124.211 352281647 482435 129 79 218 131 Unrestricted 0.0 Metagenome 3300024313 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 29D DOE Joint Genome Institute (JGI) 3300024313 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 225203715 452468 123 12 196 14 SRX4458827 Unrestricted 21.07 Metagenome 3300044449 *Microbiome Permanent Draft Simulated microbial communities of Trichodesmium and heterotrophic bacteria from Gulf of Aqaba, Eilat, Israel Simulated microbial communities of Trichodesmium and heterotrophic bacteria from Gulf of Aqaba, Eilat, Israel - Tfinal-1 DOE Joint Genome Institute (JGI) 3300044449 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes yeala.shaked@mail.huji.ac.il Yeala Shaked No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified simulated 29.501 34.917 387562019 483366 156 14 203 22 Unrestricted 252.9 Metagenome 3300048880 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from Gulf of California, Mexico - CTD-FK190211-008-700m-0.1 DOE Joint Genome Institute (JGI) 3300048880 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 27.58323 -111.4645 414391792 756149 211 4 279 3 Unrestricted 60.4 Metagenome 2051223008 *Microbiome Permanent Draft Human fecal microbial communities from Orebro University Hospital, Sweden, of individuals with Crohns disease Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10377 University of Maryland School of Medicine 2051223008 Metagenome Analysis released per JGI data release policy No Yes cmfraser@som.umaryland.edu Claire Fraser No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 59.274717 15.230656 25434635 58748 0 0 0 0 0.0 Metagenome 3300035176 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 5_4.5_N_13_2 DOE Joint Genome Institute (JGI) 3300035176 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1866 -2.2146 1553256228 3511076 425 2 715 3 SRX8232507 Unrestricted 8.99 Metagenome 3300030303 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces viral communities from adenoma patient in Toronto, Canada - MG100045 University of Michigan 3300030303 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 43.65 -79.38 6917340 11469 7 0 11 0 0.0 Metagenome 3300048692 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_117 DOE Joint Genome Institute (JGI) 3300048692 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 56764267 154591 613 80 1215 112 Restricted 0.0 Metagenome 3300030244 *Microbiome Permanent Draft Human feces microbial communities from Tubingen, Germany Human feces microbial communities from Tubingen, Germany - C3 University of Tuebingen 3300030244 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 48.52 9.05 41152856 52607 43 0 60 0 0.0 Metagenome 3300007086 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human saliva microbial communities from NIH, USA - visit 1, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007086 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human 39.0042816 -77.1012173 23608688 62061 31 0 66 0 0.0 Metagenome 3300055451 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.17W.16 SIP fraction DOE Joint Genome Institute (JGI) 3300055451 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 209562073 335207 35 9 54 21 Unrestricted 11.97 Metagenome 3300012282 *Microbiome Permanent Draft Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada Freshwater microbial communities from Central Basin Methane Hotpot in Lake Erie, Ontario, Canada - Station 1365 - Bottom - Depth 20.5m Molecular Research LP (MR DNA) 3300012282 Metagenome Analysis metaSPAdes released by JGI data releasing policy No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.097417 -82.141111 8.38 38778487 122954 13 0 23 3 0.0 Metagenome 3300042994 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Microcoleus vaginatus WJT46-NPBG5 and co-occurring heterotrophs from desert soil from Joshua Tree National Park, Colorado Desert, CA, United States - 20190301_28B DOE Joint Genome Institute (JGI) 3300042994 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Desert Soil Unclassified Desert soil 33.8188 -115.7638 84895876 93387 49 1 57 1 Unrestricted 112.78 Metagenome 3300042372 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME29Nov2012D4-rr0830 DOE Joint Genome Institute (JGI) 3300042372 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 518137548 809907 237 41 303 57 Unrestricted 23.52 Metagenome 3300019871 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - U3a1 DOE Joint Genome Institute (JGI) 3300019871 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9205 -106.9513 106492023 214820 228 45 489 59 SRX3944406, SRX3944407 Unrestricted 0.0 Metagenome 3300015284 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_09MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015284 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 133176183 235183 16 90 15 167 SRX3921977 Unrestricted 8.93 Metagenome 3300020440 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043) CEA Genoscope 3300020440 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 39.3599 19.4084 1200875745 2750999 477 49 907 98 0.0 Metagenome 3300030422 *Microbiome Permanent Draft Human feces microbial communities from Tubingen, Germany Human feces microbial communities from Tubingen, Germany - A1 University of Tuebingen 3300030422 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 48.52 9.05 43870350 53492 44 0 75 0 0.0 Metagenome 3300044735 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R DOE Joint Genome Institute (JGI) 3300044735 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 14.75 -16.85 701684061 1233628 340 49 620 66 Unrestricted 17.98 Metagenome 3300036768 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Filamentous streamer microbial communities from Yellowstone Lake, YNP, Wyoming, USA - WestThumb_B02_2/2 DOE Joint Genome Institute (JGI) 3300036768 Metagenome Analysis metaspades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Microbial mats filamentous streamer 44.4328 -110.5352 1631122366 2178620 704 37 967 58 SRX8287431 Unrestricted 44.68 Metagenome 3300026328 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0927_12_40cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026328 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 633321502 1090512 326 8 506 12 SRX2521035 Unrestricted 0.0 Metagenome 3300044229 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T48 S DOE Joint Genome Institute (JGI) 3300044229 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.745 -64.2736 315860792 783380 63 6 108 10 Unrestricted 60.6 Metagenome 2022920006 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP13 Bechler Spring v2 (version 2) DOE Joint Genome Institute (JGI) 2022920006 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23755042 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.286 -110.8785 11778110 19407 82 0 10 0 Unrestricted 0.0 Metagenome 3300025640 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025640 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 445578516 766970 251 55 302 79 SRX2999685 Unrestricted 0.0 Metagenome 3300028060 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T25 DOE Joint Genome Institute (JGI) 3300028060 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 62811171 126007 81 11 162 13 Unrestricted 62.2 Metagenome 3300056853 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Activated sludge microbial communities from bioreactor in WWTP, Madison, WI, USA - RS_2021-06-24_SampleA (version 2) DOE Joint Genome Institute (JGI) 3300056853 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.03331 -89.35633 190303146 223437 93 20 105 25 Unrestricted 0.0 Metagenome 3300012151 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ022 MetaG DOE Joint Genome Institute (JGI) 3300012151 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified fungus gardens 39.8727 -74.5215 191104305 377504 193 15 261 29 SRX3539456 Unrestricted 0.0 Metagenome 3300030111 *Microbiome Permanent Draft Deep subsurface porewater microbial communities from Mt Terri URL, St-Ursanne, Switzerland Deep subsurface porewater microbial communities from Mt Terri URL, St-Ursanne, Switzerland - BRH_40 Swiss Federal Institute of Technology in Lausanne 3300030111 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Groundwater Freshwater Unclassified Deep subsurface porewater 47.37892341 7.16496703 227870922 298935 97 1 117 0 0.0 Metagenome 3300036715 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - RO1DNA_8/2/18_2/3_sediment DOE Joint Genome Institute (JGI) 3300036715 Metagenome Analysis metaspades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5106 -110.3566 1917329357 2579010 683 147 932 213 SRX8283038 Unrestricted 26.35 Metagenome 3300007558 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.733 DOE Joint Genome Institute (JGI) 3300007558 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 253071920 492383 317 66 481 134 SRX2753574 Unrestricted 0.0 Metagenome 3300042219 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D154_3 DOE Joint Genome Institute (JGI) 3300042219 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 132968631 180600 78 6 110 13 Unrestricted 68.35 Metagenome 3300022404 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1OPP3 JM39 AGRF 3300022404 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 48500025 82296 32 0 41 0 0.0 Metagenome 3300045882 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Geyser Creek, Yellowstone National Park, WY, United States - MSUNE_GC_11 University of Wisconsin, Madison 3300045882 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.68915 -110.7285 126630576 202458 102 1 158 0 0.0 Metagenome 3300036387 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_C3 DOE Joint Genome Institute (JGI) 3300036387 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 112354413 347518 296 28 541 44 SRX8397011 Unrestricted 5.02 Metagenome 3300008267 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR University of Michigan 3300008267 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7026 -83.2538 8.334 408330776 800773 0 0 0 0 0.0 Metagenome 3300025402 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH03Jun09 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025402 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 155343946 299137 78 26 110 25 SRX2565526 Unrestricted 0.0 Metagenome 3300025944 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025944 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn rhizosphere 42.3948 -85.3738 3856590347 8897280 1797 116 3265 222 SRX2740417 Unrestricted 0.0 Metagenome 3300019478 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Soil microbial communities from Sao Paulo Zoo composting, S?o Paulo, Brazil - Soil Center for Advanced Technologies in Genomics, Sao Paulo University 3300019478 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Environmental Terrestrial Unclassified Soil Unclassified soil -23.651072 -46.620675 7445173 21970 12 0 14 0 0.0 Metagenome 3300011271 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG DOE Joint Genome Institute (JGI) 3300011271 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Saprolite Vadose zone soil 39.7291 -123.6419 2622369115 5336497 1258 32 2310 71 SRX2526894 Unrestricted 0.0 Metagenome 3300059741 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1555A-3 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059741 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2024 -123.9409 108494806 242067 199 24 291 45 SRX2753732 Unrestricted 0.0 Metagenome 3300042884 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jun2003-ww0363 DOE Joint Genome Institute (JGI) 3300042884 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 869246949 1244023 247 39 306 60 Unrestricted 27.5 Metagenome 3300050022 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 E1 10-14 DOE Joint Genome Institute (JGI) 3300050022 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.0467 539451840 862653 246 2 404 6 Restricted 0.0 Metagenome 3300026235 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Midwestern USA - DC3-114 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026235 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 42455276 129021 109 22 188 16 SRX2770433 Unrestricted 0.0 Metagenome 3300025323 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle CSP2_plank highO2_0.1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025323 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.534762 -107.782602 2291696989 4091278 3341 34 5359 57 SRX1990991 Unrestricted 0.0 Metagenome 3300064952 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 739 in Chauvin, Alberta, Canada - S00JY_0662 Microbiome Insights 3300064952 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.4340656 -110.170687 328255597 445970 126 5 165 7 0.0 Metagenome 3300032200 *Microbiome Permanent Draft STAs constructed wetland biome Wetland sediment microbial communities from Everglades, Florida, USA - STA79-Sample07_1 University of Florida 3300032200 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy No Yes ng.hanh24@gmail.com Hanh Nguyen No Environmental Aquatic Wetlands Freshwater Sediment sediment 26.38 -80.51 6.6-8.4 26605126 37731 22 2 50 0 0.0 Metagenome 3300022062 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 35 SPOT_SRF_2012-08-15 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022062 Metagenome Analysis spades v. 3.11.1-check Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 6155730 18866 4 0 8 0 SRX5471774, SRX5471773 Unrestricted 0.0 Metagenome 7000000266 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160502038 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000266 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 5456512 9633 0 0 0 0 0.0 Metagenome 3300005255 *Microbiome Permanent Draft Hot Spring microbial communities from Great Boiling Spring, Nevada Hot spring sediment microbial communities from Great Boiling Spring, Nevada - surface sediment v2 (version 2) DOE Joint Genome Institute (JGI) 3300005255 Metagenome Analysis SPADES v3.5.0 released based on JGI ITS Yes Yes nnivanova@lbl.gov, brian.hedlund@unlv.edu Natasha Ivanova, Brian Hedlund Yes 23555835 Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot Spring 40.65833 -119.37772 6.37 20855182 26500 15 0 17 0 Unrestricted 0.0 Metagenome 3300053174 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S40_B_D89 hydrophobic DOE Joint Genome Institute (JGI) 3300053174 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 468776214 747187 165 16 239 11 Restricted 0.0 Metagenome 3300035051 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B4.7_Sample4.Rodeo7.Well667 DOE Joint Genome Institute (JGI) 3300035051 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 197810266 330441 193 0 272 0 SRX8354033 Unrestricted 50.7 Metagenome 3300028644 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Asn DOE Joint Genome Institute (JGI) 3300028644 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 371680703 612168 253 1 370 1 SRX5281751 Unrestricted 22.13 Metagenome 3300025064 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from Cariaco Basin, Caribbean Sea - 25B_WHOI_OMZ_CsCl (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025064 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 10.847 -65.114 101667092 195693 51 0 83 1 SRX2929477 Unrestricted 0.0 Metagenome 3300027533 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027533 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9232 -106.9519 305871710 666477 290 16 511 36 SRX2754306 Unrestricted 0.0 Metagenome 3300040526 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA FertPrarie soil microbial communities from Boone County, Iowa, USA - PF41-Micro-July2012 Iowa State University 3300040526 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land FertPrarie soil 42.01375 -93.783837 2508116 8084 63 5 125 6 0.0 Metagenome 3300001496 *Microbiome Permanent Draft Human axilla skin microbial communities from the University of Liverpool, UK Human axilla skin microbial communities from the University of Liverpool, UK - AX05 3300001496 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Host-associated Mammals: Human Skin Integumentary system Axilla/Armpit Human axilla skin 53.3484 -3.009 9381648 20192 16 3 19 5 0.0 Metagenome 3300060280 *Microbiome Permanent Draft Sediment microbial communities from the PNNL SFA Hanford 300 Area, Columbia River, WA, USA Sediment microbial communities from in situ POM Reactor at the PNNL SFA Hanford 300 Area, Columbia River, WA, USA - Shallow Ashed with POM DOE Joint Genome Institute (JGI) 3300060280 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes eroden@geology.wisc.edu Eric Roden No Environmental Aquatic River Freshwater Sediment Sediment 46.467778 -119.464444 1766501459 2694813 594 133 677 186 Unrestricted 24.92 Metagenome 3300007765 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 2.7-0.2um, replicate b Georgia Genomics Facility 3300007765 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 365283051 475897 195 1 237 0 0.0 Metagenome 3300070761 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_042-M-20180530-COMP-DNA1 3300070761 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 14671587 46338 87 3 165 5 0.0 Metagenome 3300024499 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Yuk_RepC_8h DOE Joint Genome Institute (JGI) 3300024499 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 124449897 277128 143 2 211 12 SRX4547478 Unrestricted 16.5 Metagenome 3300013472 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Human oral microbial communities from various locations - University of British Columbia - SCG33 University of British Columbia 3300013472 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Unclassified Human oral 239377 591 3 0 4 0 SRX143142 0.0 Metagenome 3300037253 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0817U20re DOE Joint Genome Institute (JGI) 3300037253 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.039 129757076 215691 105 0 200 0 SRX8670438 Unrestricted 13.89 Metagenome 3300012076 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Georgia, USA - TSGA055 MetaG DOE Joint Genome Institute (JGI) 3300012076 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 32.5453 -82.1226 169321355 307734 76 214 114 418 SRX3539531 Unrestricted 0.0 Metagenome 3300007272 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 159005010 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007272 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 57900492 61098 55 0 65 0 0.0 Metagenome 3300026729 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A3-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026729 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 19779906 66104 95 3 184 8 SRX1991261 Unrestricted 0.0 Metagenome 3300049830 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Woodstock, New Hampshire, USA - watershed3_2019_sed_WHONDRS-S19S_0084 DOE Joint Genome Institute (JGI) 3300049830 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 43.954722 -71.722778 825367750 1750058 337 12 710 17 Unrestricted 58.46 Metagenome 3300020602 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States - Redfir_Yose_2 DOE Joint Genome Institute (JGI) 3300020602 Metagenome Analysis spades v. 3.10.1 Yes Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.6622 -119.6197 727303767 1495034 10 11 3 25 SRX4002657 Unrestricted 30.02 Metagenome 3300003177 *Microbiome Permanent Draft Black smoker hydrothermal chimney microbial communities from Manus Basin, Bismarck Sea 373B Max Planck Institute for Marine Microbiology 3300003177 Metagenome Analysis released by Petra Pjevac No Yes ppjevac@mpi-bremen.de, pjevac@microbial-ecology.net Petra Pjevac Yes 29696004 Environmental Aquatic Hydrothermal vents Marine Black smokers Black smoker hydrothermal chimney -3.565 149.989 97844771 138783 26 8 28 10 0.0 Metagenome 3300007718 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1370A-3 DOE Joint Genome Institute (JGI) 3300007718 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.234 -123.9135 183015709 374377 352 105 593 153 SRX2753584 Unrestricted 0.0 Metagenome 3300029822 *Microbiome Permanent Draft Liquor fermentation pit mud microbial communities from Chongqing University, China Liquor fermentation pit mud microbial communities from Chengdu, China - Meta-7-3-30-T Chongqing University 3300029822 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Engineered Bioreactor Unclassified Unclassified Unclassified Fermentation pit mud 30.65 104.06 278586435 410450 187 0 296 0 SRX691283 0.0 Metagenome 3300039840 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Abby Road, Pacific Northwest, WA, USA - ABBY_061-M-20170606-COMP-DNA1 Battelle Memorial Institute 3300039840 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.76243 -122.33033 27420440 78455 89 10 161 22 0.0 Metagenome 3300047276 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Altamaha River, Georgia, USA - NASQAN2014_193 DOE Joint Genome Institute (JGI) 3300047276 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 501865807 988024 342 32 625 51 Unrestricted 18.14 Metagenome 3300040013 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_031-M-20160718-COMP-DNA1 Battelle Memorial Institute 3300040013 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 16059177 49667 87 1 181 3 0.0 Metagenome 3300033997 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from deep shales in Oklahoma, United States - MC-FT7-sol DOE Joint Genome Institute (JGI) 3300033997 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back fracking water 35.784 -98.26 294793070 454431 116 0 151 0 SRX7525007 Unrestricted 174.23 Metagenome 3300049383 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - 14-1 DOE Joint Genome Institute (JGI) 3300049383 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 178619178 531513 315 7 570 9 Unrestricted 6.75 Metagenome 3300033601 *Microbiome Permanent Draft Metagenomic SGS 2x251 Staggered mock microbial community from ATCC, Manassa, VA, USA - ATCC7 Illumina 3300033601 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Laboratory 38.752303 -77.519989 27104506 34669 14 0 27 0 0.0 Metagenome 3300000522 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3 v5 (version 5) DOE Joint Genome Institute (JGI) 3300000522 Metagenome Analysis released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300036644 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C1-7A DOE Joint Genome Institute (JGI) 3300036644 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 232032210 680240 384 8 690 12 SRX8816768 Unrestricted 5.27 Metagenome 3300045799 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - G3-R3-A DOE Joint Genome Institute (JGI) 3300045799 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3549 19.0438 197897538 451429 181 9 322 17 Unrestricted 5.98 Metagenome 3300025589 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR1_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025589 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 36.29 139.38 366479614 620965 328 0 464 2 SRX2157909 Unrestricted 0.0 Metagenome 3300041492 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_2 MetaG AgResearch, New Zealand, Mosgeil 3300041492 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Unclassified Roots Unclassified White clover root -43.648506 172.343549 773533019 1455839 159 22 540 89 0.0 Metagenome 3300022348 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Lake Baghdad, Rottnest Island (WA - Australia) - LBBM1 JM16 AGRF 3300022348 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.994794 115.523776 37596313 70309 33 1 47 1 0.0 Metagenome 3300034986 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D1105U02 DOE Joint Genome Institute (JGI) 3300034986 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0387 382237581 954841 421 13 711 17 SRX8255984 Unrestricted 6.18 Metagenome 2022827001 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of healthy infants and adults Gut Microbiota of 1 Month Old Human Infant DOE Joint Genome Institute (JGI) 2022827001 Metagenome Analysis Released by Nikos bc they were more than 5 years old No Yes francino_pil@gva.es M. Pilar Francino Yes 20333224 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 43228554 85906 0 0 0 0 0.0 Metagenome 3300025567 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025567 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.05241603 -121.76907401 234726827 484898 267 1 513 2 SRX7142755 Unrestricted 0.0 Metagenome 3300043627 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 273-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043627 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9794 -107.0377 652326695 1760870 479 28 881 47 Unrestricted 6.45 Metagenome 3300028369 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #562 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028369 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 168770957 345623 76 26 95 34 SRX3242023 Unrestricted 0.0 Metagenome 3300038729 *Microbiome Permanent Draft Acid mine drainage microbial biofilm communities from Richmond Mine, California, USA Acid mine drainage biofilm communities from Richmond mine site C75, Iron Mt, CA, USA - AMDC751210 University of California, Berkeley 3300038729 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 40.67542 -122.53025 12650586 16143 8 0 14 0 0.0 Metagenome 3300013713 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00520 Weill Cornell Medical College 3300013713 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.69 -73.99 19070420 32133 12 0 19 0 SRX822489 0.0 Metagenome 3300007010 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 764042746 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007010 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 3101749 4304 1 0 6 0 0.0 Metagenome 2170459004 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm (2) 454 Life Sciences 2170459004 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.804241 -0.372114 319123000 859339 261 13 458 21 0.0 Metagenome 3300016484 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water catchment in Singapore - WC_ Site 4b, Oct Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016484 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 1.35 103.87 91505148 135669 12 6 22 9 0.0 Metagenome 3300044702 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - COC3D DOE Joint Genome Institute (JGI) 3300044702 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 732617924 1328332 367 27 747 29 Unrestricted 16.27 Metagenome 3300005886 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_205 DOE Joint Genome Institute (JGI) 3300005886 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 242268860 810287 383 7 773 7 SRX2564782, SRX2581060 Unrestricted 0.0 Metagenome 3300037458 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Sediment microbial communities from wetlands near Prado wetlands, California, USA - CSM_Prado_Oct18_PM_0.5z2 DOE Joint Genome Institute (JGI) 3300037458 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 2125791694 3354839 546 32 841 52 SRX9164572 Unrestricted 18.05 Metagenome 3300069372 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lajas Experimental Station, Atlantic Neotropical, PR, USA - LAJA_046-M-20160920-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069372 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 18.02125 -67.0769 11099424 35616 39 3 77 4 0.0 Metagenome 3300046393 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA066-TCU DOE Joint Genome Institute (JGI) 3300046393 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6876 -83.5019 284604486 750068 287 19 539 28 Unrestricted 8.88 Metagenome 3300070726 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Mountain Lake Biological Station, Virginia, USA - MLBS_061-O-20180612-COMP-DNA1 3300070726 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 49979280 148073 85 11 140 9 0.0 Metagenome 3300033887 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1 DOE Joint Genome Institute (JGI) 3300033887 Metagenome Analysis spades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0473 512292958 917482 164 6 301 10 SRX8137025, SRX8137024 Unrestricted 0.0 Metagenome 3300021444 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02 DOE Joint Genome Institute (JGI) 3300021444 Metagenome Analysis spades v. 3.11.1-check Yes Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Environmental Terrestrial Grasslands Soil Bulk soil bulk soil -19.28 -43.5919 1151465892 2802832 786 40 1477 75 SRX4020418 Unrestricted 8.82 Metagenome 3300040561 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_009-M-20160719-COMP-DNA1 Battelle Memorial Institute 3300040561 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 2535082 7838 15 2 25 0 0.0 Metagenome 3300042978 *Microbiome Permanent Draft Soil microbial communities from Wonju, South Korea Soil microbial communities from Wonju, South Korea - Sample B1 Macrogen Inc 3300042978 Metagenome Analysis MEGAHIT v. 2.4.2 No Yes mistiers2@gmail.com Jin-Kyung Hong No Environmental Terrestrial Unclassified Soil Unclassified Soil 37.291845 127.915891 33554845 41400 9 2 17 2 0.0 Metagenome 3300002595 *Microbiome Permanent Draft Biogas reactor microbial communities from Swedish University of Agricultural Sciences, Alnarp, Sweden, and As, Norway that are enriched on cellulose Biogas reactor microbial communities from SLU, Sweden, that are enriched on cellulose - Sample No4 3300002595 Metagenome Analysis released by JGI data releasing policy No Yes phil.pope@nmbu.no Phil Pope No Engineered Bioreactor Biogas Anaerobic Unclassified Biogas reactor 55.656904 13.082968 19920125 21098 15 0 19 0 0.0 Metagenome 3300008143 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158499257 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008143 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 154655250 208380 93 0 131 0 0.0 Metagenome 3300011873 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01120 Weill Cornell Medical College 3300011873 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.66 -73.88 44677504 72685 18 0 36 0 SRX823075 0.0 Metagenome 3300031240 *Microbiome Permanent Draft Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG DOE Joint Genome Institute (JGI) 3300031240 Metagenome Analysis spades v. 3.12.0 Yes Yes rbneum@uw.edu Rebecca Neumann No Host-associated Plants Rhizosphere Roots Soil rhizosphere 47.6516 -122.3045 1183341682 2665334 794 16 1313 25 SRX5345975 Unrestricted 9.43 Metagenome 3300027217 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1547A-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027217 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2314 -123.8828 117931715 246758 112 25 210 32 SRX2753624 Unrestricted 0.0 Metagenome 3300023112 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_2_MG DOE Joint Genome Institute (JGI) 3300023112 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Inlet Marine Unclassified seawater 48.58 -123.5 770394218 1977399 816 115 1452 215 SRX4480223 Unrestricted 8.23 Metagenome 3300064759 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 590 in Spirit river, Alberta, Canada - S00JY_0675 Microbiome Insights 3300064759 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 56.14294627 -117.3944095 6279741 9759 15 0 28 0 0.0 Metagenome 3300031596 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - CB9_SCM DOE Joint Genome Institute (JGI) 3300031596 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified Marine 77.9995 -150.0065 763715883 1582936 633 174 929 341 SRX5797855 Unrestricted 16.17 Metagenome 3300045153 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_1_C DOE Joint Genome Institute (JGI) 3300045153 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 165760672 191162 101 1 128 1 Unrestricted 116.41 Metagenome 3300014573 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS58_24 University of Hohenheim 3300014573 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 111820318 188224 79 0 157 0 0.0 Metagenome 3300028768 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119 DOE Joint Genome Institute (JGI) 3300028768 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92039953 -106.94828697 901119146 2384354 402 19 732 32 SRX5354621 Unrestricted 9.65 Metagenome 3300029165 *Microbiome Permanent Draft Infant fecal microbial communities from Pittsburgh, USA Infant fecal microbial communities from Pittsburgh, USA - NECEvent2014_5_2 Banfield Lab, University of California, Berkeley 3300029165 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant fecal 40.4308 -79.9598 32647395 50104 55 0 45 0 0.0 Metagenome 3300038328 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI150_2019_feb_10m DOE Joint Genome Institute (JGI) 3300038328 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 339370502 751005 333 96 488 161 SRX9402599 Unrestricted 9.51 Metagenome 3300069219 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Chase Lake Wetlands, North Dakota, USA - WOOD_003-M-20210708-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069219 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 47.118581 -99.239944 2284585919 5547138 1520 43 2812 68 0.0 Metagenome 3300026202 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF43B (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026202 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 368211926 749322 255 161 366 246 SRX2781861 Unrestricted 0.0 Metagenome 3300005996 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Hot Lake Consortium UCC-RE (version 3) (version 3) DOE Joint Genome Institute (JGI) 3300005996 Metagenome Analysis spades v. 3.1.0 Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 122396017 173880 83 6 82 2 SRX2575224, SRX2575222, SRX2575223, SRX2575220, SRX2575221 Unrestricted 0.0 Metagenome 3300025435 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul08 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025435 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 188179627 380505 125 35 200 60 SRX2565365 Unrestricted 0.0 Metagenome 3300037851 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from Nevada, United States - South Indian Spring (SIS_S3) DOE Joint Genome Institute (JGI) 3300037851 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified Desert spring 36.4265 -116.3098 7.37 3139944486 4664768 1315 29 2053 38 SRX9167564 Unrestricted 12.85 Metagenome 7000000697 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 159247771 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000697 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 942042 2301 0 0 0 0 SRX024619, SRX024620 0.0 Metagenome 3300027864 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Cornitermes sp. P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Co191P1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027864 Metagenome Analysis spades v. 3.11.1 Yes Yes brune@mpi-marburg.mpg.de Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 5.0626 -53.0462 2312152600 3340641 913 40 1391 59 SRX3327885 Unrestricted 0.0 Metagenome 3300040234 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_055-O-20170718-COMP-DNA1 Battelle Memorial Institute 3300040234 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 7506103 22037 53 14 80 14 0.0 Metagenome 3300013553 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100326 University of Pennsylvania 3300013553 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 736708 2213 6 2 8 3 SRX756331 0.0 Metagenome 3300026922 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN118 (SPAdes) DOE Joint Genome Institute (JGI) 3300026922 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 39.23550963 -121.2836963 1213133 4236 31 2 52 9 SRX3311730 Unrestricted 0.0 Metagenome 3300036940 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B6.10_Sample6.Rodeo10.Well662 DOE Joint Genome Institute (JGI) 3300036940 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 416869539 667172 363 0 474 0 SRX8355719 Unrestricted 34.7 Metagenome 3300048079 *Microbiome Permanent Draft Marine and freshwater sediment microbial communities from various locations Freshwater sediment microbial communities from Lake Michigan, United States - MI141 (c) DOE Joint Genome Institute (JGI) 3300048079 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes smtechtm@mtu.edu Stephen Techtmann No Environmental Aquatic Sediment Freshwater Unclassified Freshwater sediment 44.7363 -86.7218 805266850 2017567 596 1 1034 1 Unrestricted 8.3 Metagenome 3300029118 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021286-32 Beijing Genomics Institute (BGI) 3300029118 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 158197447 206800 137 0 215 0 0.0 Metagenome 7000000221 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763820215 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000221 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 21393023 43059 0 0 0 0 0.0 Metagenome 3300028715 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203 DOE Joint Genome Institute (JGI) 3300028715 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92044255 -106.94881797 574944474 1453261 328 9 602 16 SRX5355397 Unrestricted 11.24 Metagenome 3300041048 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - T4D1 IDBA-UD 100x Baseclear 3300041048 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 104720495 171787 166 11 284 14 0.0 Metagenome 3300034235 *Microbiome Permanent Draft Metagenomic SGS 2x251 Cornfield soil microbial communities from Madison, WI, USA - CF3 Illumina 3300034235 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Agricultural land Soil 43.056543 -89.477477 1926449885 5335432 707 20 1189 32 0.0 Metagenome 3300035686 *Microbiome Permanent Draft Biological soil crust microbial communities from Mojave Desert, California, United States Biological soil crust microbial communities from Mojave Desert, California, United States - LAC_S2 DOE Joint Genome Institute (JGI) 3300035686 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erik@olemiss.edu Erik Hom No Environmental Terrestrial Soil crust Soil Biological soil crust 34.1733 -115.3858 1699934604 3581752 1299 37 2191 55 SRX8380706 Unrestricted 14.31 Metagenome 2140918007 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from Bonanza Creek, Alaska, USA - Active_all DOE Joint Genome Institute (JGI) 2140918007 Metagenome Analysis Velvet & CLC released per Tijana's request (7/1/15) No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 192471583 353237 45 6 64 0 0.0 Metagenome 3300047199 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2014 IH-SH_8cm DOE Joint Genome Institute (JGI) 3300047199 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.2129 19.0247 152003087 284440 171 3 346 9 Restricted 32.64 Metagenome 3300010358 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama - MetaG Plot_3 DOE Joint Genome Institute (JGI) 3300010358 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes cpan@ou.edu Chongle Pan No Environmental Terrestrial Tropical forest Soil Bulk soil Tropical forest soil 9.1086 -79.8436 3798727675 8593725 1843 64 3520 126 SRX2525678 Unrestricted 0.0 Metagenome 3300000510 *Microbiome Permanent Draft Anaerobic digester microbial communities from Soeholt, Denmark Anaerobic digester microbial communities from Northern Denmark, sample from Foulum manure Aalborg University 3300000510 Metagenome Analysis released per JGI data release policy No Yes starnas88@gmail.com Piotr Starnawski No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic digester 56.496244 9.599689 165123238 210087 78 0 121 0 0.0 Metagenome 3300032318 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 17-072 Genome Quebec 3300032318 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.266623 -68.864121 817913863 1723496 450 120 774 235 0.0 Metagenome 2189573023 *Microbiome Permanent Draft Freshwater microbial communities from LaBonte Lake, Laramie, Wyoming, USA Fresh water microbial communities from LaBonte Lake, Laramie, Wyoming, sample from algal/cyanobacterial bloom material peak-bloom 2 DOE Joint Genome Institute (JGI) 2189573023 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes sgtringe@lbl.gov, nlward@uwyo.edu Susannah Tringe, Naomi Ward No Environmental Aquatic Lake Freshwater Algal bloom Freshwater 41.321 -105.586 268405022 669817 200 65 405 133 Unrestricted 0.0 Metagenome 3300038986 *Microbiome Permanent Draft Paddy soil microbial communities from Vercelli, Italy Paddy soil microbial communities from Vercelli, Italy - timepoint5 Max Planck Institute for Terrestrial Microbiology 3300038986 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes bei@mpi-marburg.mpg.de Qicheng Bei No Environmental Terrestrial Paddy field/soil Soil Unclassified Paddy soil 45.3241611 8.37385833 456328365 643855 77 4 185 6 0.0 Metagenome 3300043105 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - Beaver2Cecum1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043105 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.18 -122.54 298614215 569123 584 20 946 21 SRX8345784 Unrestricted 35.53 Metagenome 3300032365 *Microbiome Permanent Draft Lake microbial communities from Canada Sediment microbial communities from the Atlantic Maritime Ecozone, Canada - bottom sediment 07-025 Genome Quebec 3300032365 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Sediment 43.6497 -65.7118 716886795 1606684 459 1 877 5 0.0 Metagenome 3300022725 *Microbiome Permanent Draft Solar saltern microbial communities from the Namib Desert Sediment microbial communities from solar saltern in the Namib Desert, Gobabeb, Namibia - Hosabes source 2017 Genewiz Inc. 3300022725 Metagenome Analysis SPAdes v. 3.6.0 released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat and sediment -23.5071528 15.07125 7.6-7.8 692001242 983448 249 11 335 12 0.0 Metagenome 3300041968 *Microbiome Permanent Draft Termite hindgut microbial communities from Coptotermes formosanus workers in Fort Lauderdale, Florida, USA Termite hindgut microbial communities from Coptotermes formosanus workers in Fort Lauderdale, Florida, USA - CFCB1 Arizona State University 3300041968 Metagenome Analysis Spades v. 3.11.1 released by JGI data releasing policy No Yes jthilema@asu.edu Jonathon Hileman No Host-associated Arthropoda: Insects Hindgut Digestive system Unclassified termite hindgut 26.1 -80.17 198298058 454473 44 5 153 15 0.0 Metagenome 3300050718 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water viral communities from Sandhills, Nebraska, United States - NSL_Border_2019_V DOE Joint Genome Institute (JGI) 3300050718 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.79185 -102.53404 260769454 670721 38 2 54 1 Unrestricted 110.02 Metagenome 3300029810 *Microbiome Permanent Draft Dolichoderus ant bacterial communities Ant gut bacterial community from Dolichoderus sp. 4-PL2018, Madre de Dios, Puerto Maldonado, Peru - colony JSC189 Harvard University 3300029810 Metagenome Analysis IDBA-UD v. 1.0 released by JGI data releasing policy Yes Yes jar337@drexel.edu Jacob Russell No Host-associated Arthropoda: Insects Gut Digestive system Unclassified ant gut -12.5 -70.1 133634504 150158 3 1 4 6 SRX3936342 0.0 Metagenome 3300050272 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_28 DOE Joint Genome Institute (JGI) 3300050272 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.492 160.907 362869832 560249 96 14 124 37 SRX18236971 Restricted 32.65 Metagenome 3300012863 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - HID1975K_E0 MG DOE Joint Genome Institute (JGI) 3300012863 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 128597306 224852 123 0 171 0 SRX3564465 Unrestricted 0.0 Metagenome 3300006844 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 DOE Joint Genome Institute (JGI) 3300006844 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Host-associated Plants Rhizosphere Roots Soil Populus rhizosphere 35.8443 -83.9607 5764253203 15120406 3101 129 5151 248 SRX2843301 Unrestricted 0.0 Metagenome 3300007022 *Microbiome Permanent Draft Non-marine hypersaline water viral communities from Mallorca 2014 (Spain)E1 Non-marine hypersaline water viral communities from Mallorca, Spain, 2014 - E1 T6 University of Alicante 3300007022 Metagenome Analysis IDBA 1.1.1 PRE correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline water 39.338015 3.051796 25619601 74630 22 0 2 0 0.0 Metagenome 3300001017 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN609 DOE Joint Genome Institute (JGI) 3300001017 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 278111 831 15 0 20 1 SRX1986977 Unrestricted 0.0 Metagenome 3300012906 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1 DOE Joint Genome Institute (JGI) 3300012906 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 700316764 1790516 712 46 1436 82 SRX3297423 Unrestricted 3.96 Metagenome 3300003801 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius algarvensis Type A CAVOLI.1 DOE Joint Genome Institute (JGI) 3300003801 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 220517222 552669 11 3 15 2 SRX2712534 Unrestricted 0.0 Metagenome 3300047513 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 soil DOE Joint Genome Institute (JGI) 3300047513 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.588162 -123.19393 6.64 325630746 621307 255 22 527 33 Unrestricted 23.97 Metagenome 3300001366 *Microbiome Permanent Draft Kakapo fecal microbial communities from Codfish Island, New Zealand Kakapo fecal microbial communities from Codfish Island, New Zealand - Kakapo Adult2 New Zealand Genomics Limited 3300001366 Metagenome Analysis released per JGI data release policy No Yes dwai012@aucklanduni.ac.nz, d.waite1986@gmail.com David Waite No Host-associated Birds Large intestine Digestive system Fecal Kakapo fecal -46.77 167.63 334405551 1448757 3291 12 5620 35 0.0 Metagenome 3300027371 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027371 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 203832804 521897 214 31 434 46 SRX3311915 Unrestricted 0.0 Metagenome 3300031730 *Microbiome Permanent Draft Soil and ectomycorrhiza microbial communities from Populus trichocarpa stands in riparian zones in the Pacific Northwest, United States Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM DOE Joint Genome Institute (JGI) 3300031730 Metagenome Analysis spades v. 3.12.0 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Plants Unclassified Roots Unclassified ectomycorrhiza 47.5302 -121.825 2156867895 3727517 524 169 803 203 SRX5650769 Unrestricted 25.62 Metagenome 3300035137 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0608M12 DOE Joint Genome Institute (JGI) 3300035137 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8962 -97.0386 589426243 1465782 625 4 1164 5 SRX8257431 Unrestricted 5.72 Metagenome 3300012226 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT400_2 DOE Joint Genome Institute (JGI) 3300012226 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9779 -107.0024 220075462 542873 452 2 952 6 SRX3539342 Unrestricted 0.0 Metagenome 3300013964 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Human oral microbial communities from various locations - University of British Columbia - SCG26 University of British Columbia 3300013964 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Unclassified Human oral 266532 714 2 0 5 0 SRX143135 0.0 Metagenome 3300009640 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_16_40 DOE Joint Genome Institute (JGI) 3300009640 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 474754225 793229 205 3 341 3 SRX3003647 Unrestricted 0.0 Metagenome 3300037247 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_4500m_C5_20cm25cm DOE Joint Genome Institute (JGI) 3300037247 Metagenome Analysis metaspades v. 3.13.0 Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 35.689 -123.0778 1574504789 2553704 614 4 941 4 SRX8383001 Unrestricted 15.86 Metagenome 3300021210 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge Cinachyra sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - cg24is 200bp-microeukaryotes University of New South Wales 3300021210 Metagenome Analysis IDBA-UD released by JGI data releasing policy Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Cinachyra sp. (marine sponge) -9.8241 150.825833 382988 814 0 0 0 0 0.0 Metagenome 3300050319 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_85 DOE Joint Genome Institute (JGI) 3300050319 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.875 160.739 357585321 556196 54 14 65 23 SRX18235936 Restricted 44.08 Metagenome 3300004143 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG01_land_8/20/14_3.00 DOE Joint Genome Institute (JGI) 3300004143 Metagenome Analysis MEGAHIT v. 0.2.0 revert back to private per Christa Yes Yes jbanfield@berkeley.edu, jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield, Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 386246012 967898 601 23 1096 38 SRX3348116 Unrestricted 0.0 Metagenome 3300029255 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Sweden Biosolids microbial communities from sewage treatment plant in Sweden - SWESTP9 - Uppsala-digested 110 University of Gothenburg 3300029255 Metagenome Analysis released Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified biosolids 59.844519 17.659844 222472952 387935 221 0 345 0 0.0 Metagenome 3300040582 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 093B_R1 University of Maryland 3300040582 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.729 27.09625 1974302 5944 37 1 44 1 0.0 Metagenome 3300003669 *Microbiome Permanent Draft Coalbed water microbial communities from the Lithgow State Coal Mine, New South Wales, Australia Coalbed water microbial communities from the Lithgow State Coal Mine, New South Wales, Australia (LSCM4 Early Sample 3) 3300003669 Metagenome Analysis LSCM4E released by JGI data releasing policy Yes Yes john_webster89@hotmail.com John Webster No Environmental Aquatic Groundwater Freshwater Coalbed water Coalbed water -33.460524 150.168149 169839258 307478 189 4 262 4 0.0 Metagenome 3300042700 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from Semeiov-Ash lighthouse hydrothermal vent, Atlantic Ocean - BputSym_Se-AL_2_1115B Re-assembly Max Planck Institute for Marine Microbiology 3300042700 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 13.513467 -44.963133 95645230 93012 8 3 10 3 ERX3367187 0.0 Metagenome 3300003136 *Microbiome Permanent Draft Marine microbial communities from the Lost City Hydrothermal Field Marine microbial communities from the Lost City Hydrothermal Field DOE Joint Genome Institute (JGI) 3300003136 Metagenome Analysis released based on JGI ITS No Yes bbrazelton@gmail.com, william.brazelton@utah.edu; wbrazelton@gmail.com Brazelton, William J., William J. Brazelton; William Brazelton Yes 19571895 Environmental Aquatic Hydrothermal vents Marine Unclassified Marine 30.12 -42.12 9-11 24827591 45285 19 1 32 4 Unrestricted 0.0 Metagenome 3300050558 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_RHK2_4_to_RHK2 DOE Joint Genome Institute (JGI) 3300050558 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.153 -124.211 452051148 564761 105 69 185 110 Unrestricted 26.4 Metagenome 3300070967 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_001-M-20190716-COMP-DNA1 3300070967 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 5131164 16680 30 4 63 6 0.0 Metagenome 3300031414 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLRC.R2 DOE Joint Genome Institute (JGI) 3300031414 Metagenome Analysis spades v. 3.12.0 Yes Yes icelab@berkeley.edu Steven Lindow No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 37.8864 -122.2981 584653435 985663 512 25 718 29 SRX5658575 Unrestricted 57.47 Metagenome 3300070655 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_003-O-20200806-COMP-DNA1 3300070655 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 19912575 64452 116 5 234 10 0.0 Metagenome 3300007651 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1555C-3 DOE Joint Genome Institute (JGI) 3300007651 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2024 -123.9409 215494442 428714 327 48 554 67 SRX2753736 Unrestricted 0.0 Metagenome 3300009944 *Microbiome Permanent Draft Bacterial communities from Atta sexdens rubropilosa (Attini ant) fungus gardens Atta sexdens rubropilosa (Attini ant) fungus garden bacterial communities from Botucatu, Sao Paulo State, Brazil Macrogen Inc 3300009944 Metagenome Analysis Megahit v1.0.6 (a single node assembler which makes use of succinct de Bruijn graph - SdBG) released per JGI data release policy No Yes m.barcoto@hotmail.com Mariana de Oliveira Barcoto No Host-associated Microbial Unclassified Bacteria Unclassified Attini ant fungus garden -22.819167 -48.427778 228894198 271871 60 3 72 3 0.0 Metagenome 3300012037 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #496 DOE Joint Genome Institute (JGI) 3300012037 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 391563075 724525 141 51 216 86 SRX3295826 Unrestricted 0.0 Metagenome 3300013660 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00842 Weill Cornell Medical College 3300013660 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.96 12727605 19570 12 0 17 0 SRX822808 0.0 Metagenome 3300070989 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Northern Great Plains Research Laboratory, North Dakota, USA - NOGP_005-M-20200706-COMP-DNA1 3300070989 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 10293358 29453 50 4 69 6 0.0 Metagenome 3300043059 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8ST15 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043059 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 6558742 19604 47 8 74 16 SRX8379683 Unrestricted 23.56 Metagenome 3300049654 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_A_0_control DOE Joint Genome Institute (JGI) 3300049654 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 223931244 503934 407 29 795 47 Unrestricted 11.08 Metagenome 3300019756 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States - IW6Sep16_MG DOE Joint Genome Institute (JGI) 3300019756 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Unclassified freshwater 38.7906 -75.1638 216320795 493782 244 39 440 69 Unrestricted 4.87 Metagenome 3300011652 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00728 Weill Cornell Medical College 3300011652 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -74.0 30632571 46099 25 0 34 0 SRX822695 0.0 Metagenome 3300039148 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Realigned salt marsh sediment microbial communities from Fingringhoe Range, United Kingdom - S FRRM 1A University of York 3300039148 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Realigned salt marsh sediment 51.83015 0.9503 61290434 133332 104 0 174 0 0.0 Metagenome 3300038745 *Microbiome Finished Freshwater and sediment microbial communities from Tucurui Dam reservoir, Para, Brazil Freshwater microbial communities from Tucurui Dam reservoir, Para, Brazil - aphotic Federal University of Para 3300038745 Metagenome Analysis Spades v. 3.9 released by JGI data releasing policy No Yes savscosta@gmail.com savio costa No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater -3.76953 -49.6741 216271363 690836 38 1 145 0 0.0 Metagenome 3300026910 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 65 (SPAdes) DOE Joint Genome Institute (JGI) 3300026910 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 78225448 194369 87 0 179 1 SRX4341313 Unrestricted 0.0 Metagenome 3300045826 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_3_E DOE Joint Genome Institute (JGI) 3300045826 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 157603837 200404 91 1 119 2 Unrestricted 107.65 Metagenome 3300017928 *Microbiome Permanent Draft Coastal wetland sediment microbial communities from the Mid-Atlantic and Southeast Atlantic Coast of USA, responding to salinity intrusion. Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1 DOE Joint Genome Institute (JGI) 3300017928 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Freshwater sediment 35.9061 -76.1569 569341036 1273041 379 20 698 43 SRX4367175 Unrestricted 5.33 Metagenome 3300039535 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Ozarks Complex, AL, USA - LENO_006-M-20160830-COMP-DNA1 Battelle Memorial Institute 3300039535 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.85388 -88.16122 176460169 456861 227 11 463 19 0.0 Metagenome 3300003408 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_inoc_plan DOE Joint Genome Institute (JGI) 3300003408 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioremediation Unclassified Thiocyanate Unclassified Wastewater bioreactor -33.936637 18.478905 284901232 430061 227 17 373 20 SRX2576692 Unrestricted 0.0 Metagenome 3300026896 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 71 (SPAdes) DOE Joint Genome Institute (JGI) 3300026896 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 66113254 167924 97 1 201 3 SRX4341346 Unrestricted 0.0 Metagenome 3300045415 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-545 Genome Quebec 3300045415 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 54.051353 -124.777216 1057948545 2434705 445 53 702 105 0.0 Metagenome 3300021072 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L442-15m DOE Joint Genome Institute (JGI) 3300021072 Metagenome Analysis spades v. 3.10.1 Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.775 -93.818 677046203 1471786 597 7 946 10 SRX3984573 Unrestricted 15.46 Metagenome 3300042008 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z062817_5219 DOE Joint Genome Institute (JGI) 3300042008 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.201 -97.9447 443388893 1145325 515 35 970 69 SRX14828591 Unrestricted 7.47 Metagenome 3300012450 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100106 University of Pennsylvania 3300012450 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9089555 22963 8 0 19 0 SRX756724 0.0 Metagenome 3300044692 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - CSC2S DOE Joint Genome Institute (JGI) 3300044692 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 1187650009 2009866 407 26 678 32 Unrestricted 15.81 Metagenome 3300064805 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 615 in Smith, Alberta, Canada - S00JY_0650 Microbiome Insights 3300064805 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 55.07270132 -113.545927 107740933 155080 60 3 99 2 0.0 Metagenome 3300030410 *Microbiome Permanent Draft Cryoconite microbial communities around the Greenland ice sheet Cryoconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_L-B1a DMAC, Technical University of Denmark 3300030410 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Ice Freshwater Cryoconite Cryconite 65.38 -38.53 379358357 687028 192 25 275 43 SRX2579849 0.0 Metagenome 3300049138 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S16_B_D89 hydrophilic DOE Joint Genome Institute (JGI) 3300049138 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 457903209 787262 235 61 387 76 Unrestricted 23.14 Metagenome 3300001321 *Microbiome Permanent Draft Bioengineered switchgrass rhizosphere microbial community from Knoxville, Tennessee, USA Bioengineered switchgrass rhizosphere microbial community from Knoxville, Tennessee, USA - 15 Joint 3300001321 Metagenome Analysis released by JGI data releasing policy No Yes jliu36@utk.edu Jiang Liu No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 35.98 -83.92 17265362 58171 21 6 46 7 0.0 Metagenome 3300001754 *Microbiome Permanent Draft Wastewater microbial communities from Belvaux, Luxembourg Wastewater microbial communities from Belvaux, Luxembourg - M28 3300001754 Metagenome Analysis CLC genomics Workbench released by JGI data releasing policy Yes Yes goux@lippmann.lu, xavier.goux@list.lu Xavier Goux No Engineered Bioreactor Sludge Anaerobic Unclassified Wastewater 49.506095 5.943536 15500648 17335 7 0 11 0 0.0 Metagenome 3300005822 *Microbiome Permanent Draft Marine sediment microbial communities from Aarhus Bay station M5, Denmark Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 25 cmbsf, MM1 Aarhus University 3300005822 Metagenome Analysis IDBA released per JGI data release policy No Yes starnas88@gmail.com Piotr Starnawski No Environmental Aquatic Coastal Marine Sediment Marine sediment 56.10555 10.463333 147481847 232245 104 2 187 3 0.0 Metagenome 3300002459 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 DOE Joint Genome Institute (JGI) 3300002459 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 334371171 831898 666 43 1220 45 SRX1990943 Unrestricted 0.0 Metagenome 3300040409 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_047-O-20160816-COMP-DNA1 Battelle Memorial Institute 3300040409 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 5058512 15425 37 6 71 6 0.0 Metagenome 3300020214 *Microbiome Permanent Draft Freshwater microbial communities from Lake Tanganyika, Tanzania Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015054 Kigoma Offshore 80m DOE Joint Genome Institute (JGI) 3300020214 Metagenome Analysis spades v. 3.10.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater lake -4.8915 29.586 1492204550 2521350 573 49 871 80 SRX4821666 Unrestricted 32.05 Metagenome 3300006113 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH08Aug08 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006113 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 302541425 799795 306 51 502 96 SRX2565419 Unrestricted 0.0 Metagenome 3300002824 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A5-10 DOE Joint Genome Institute (JGI) 3300002824 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 114866 380 22 1 25 0 SRX1991126 Unrestricted 0.0 Metagenome 3300051106 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_55 DOE Joint Genome Institute (JGI) 3300051106 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -75.662 158.876 296066037 494387 36 19 58 25 SRX18236974 Restricted 0.0 Metagenome 3300012261 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Club lake, Antarctica - Metagenome #315 DOE Joint Genome Institute (JGI) 3300012261 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5417 78.2467 71167471 129796 51 1 102 1 SRX3241664 Unrestricted 0.0 Metagenome 3300003344 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from above oceans and continental USA - SEAC4RS-RF7-005 DOE Joint Genome Institute (JGI) 3300003344 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 1715956 5574 15 3 12 4 Unrestricted 0.0 Metagenome 3300024060 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from Kermadec Trench to uncover new lineages of life (NeLLi) - N074 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300024060 Metagenome Analysis spades v. 3.11.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Ocean trench Marine Sediment Deep subsurface -34.3456 -178.1771 1282893490 2663714 640 12 1036 37 SRX3203976 Unrestricted 0.0 Metagenome 3300020141 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erken, Sweden Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1 SciLifeLab 3300020141 Metagenome Analysis megahit v. 1.0.3 released per PI No Yes rhiannon.mondav@gmail.com Rhiannon Mondav No Environmental Aquatic Lake Freshwater Unclassified Freshwater 59.83763399 18.6203826 403602160 830325 330 109 501 197 0.0 Metagenome 7000000071 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 764062976 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000071 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Ivanova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 171838322 279617 0 0 0 0 0.0 Metagenome 3300040668 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountain National Park, Central Plains, CO, USA - RMNP_045-O-20170807-COMP-DNA1 Battelle Memorial Institute 3300040668 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.27591 -105.54592 1356172 4152 7 1 18 1 0.0 Metagenome 3300011946 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00192 Weill Cornell Medical College 3300011946 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.61 -73.99 28651234 44436 19 0 26 0 SRX822171 0.0 Metagenome 3300045609 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_USB_000 DOE Joint Genome Institute (JGI) 3300045609 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 915911076 1824230 927 13 1467 16 SRX12655975 Unrestricted 9.27 Metagenome 3300026745 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08K1-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026745 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 20487780 68084 75 3 120 7 SRX2576176 Unrestricted 0.0 Metagenome 3300003203 *Microbiome Permanent Draft Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 DOE Joint Genome Institute (JGI) 3300003203 Metagenome Analysis manual release request from Christa Yes Yes filipagodoyvitorino@gmail.com, NNIvanova@lbl.gov; filipagodoyvitorino@gmail.com; fgodoyvitorino@gmail.com Filipa Godoy Vitorino, Natalia Ivanova; Filipa Godoy-Vitorino; Filipa Godoy Vitorino No Host-associated Plants Rhizosphere Roots Unclassified Tabebuia heterophylla rhizosphere 18.402889 -66.050054 655453516 1538178 610 45 960 83 SRX2562477 Unrestricted 0.0 Metagenome 3300029886 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35724 Beijing Genomics Institute (BGI) 3300029886 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 114113992 128282 84 1 102 0 0.0 Metagenome 3300006301 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2 of subject 764224817 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006301 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 79615556 157637 64 0 91 0 0.0 Metagenome 3300070544 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from North Sterling, Colorado, USA - STER_035-M-20160817-COMP-DNA1 Battelle Memorial Institute 3300070544 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Agricultural land Soil Unclassified Terrestrial soil 40.469719 -103.016662 8.21-8.31 264496 913 4 0 3 0 0.0 Metagenome 3300000586 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Coal bed microbial communities from San Jean Basin, New Mexico, USA - production water: CG7: McGill University 3300000586 Metagenome Analysis No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 37.0 -108.0 7.74 6638892 10839 6 0 8 0 0.0 Metagenome 3300024940 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 37_LOW7 (SPAdes) DOE Joint Genome Institute (JGI) 3300024940 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 75535534 117959 29 0 29 0 SRX2720521 Unrestricted 0.0 Metagenome 3300043132 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5SP15 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043132 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 116442883 279781 156 5 254 9 SRX8379444 Unrestricted 19.91 Metagenome 3300048909 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 DOE Joint Genome Institute (JGI) 3300048909 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Rhizoplane Roots Unclassified Rhizoplane soil 42.40581 -85.40228 1725263837 2862306 616 54 954 66 Unrestricted 13.64 Metagenome 2004247001 *Microbiome Permanent Draft Hypersaline mat microbial communities from Guerrero Negro, Baja California Sur, Mexico Hypersaline mat microbial communities from Guerrero Negro, Mexico - 1-2mm depth into microbial mat DOE Joint Genome Institute (JGI) 2004247001 Metagenome Analysis No Yes nrpace@colorado.edu Pace, Norman Yes 18523433 Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Microbial mats Hypersaline mat 27.68908 -113.917 6-9 7469572 12153 6 0 5 0 0.0 Metagenome 3300037163 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 E1 20-24 DOE Joint Genome Institute (JGI) 3300037163 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.047 682186208 1477964 460 2 794 4 SRX8143269 Unrestricted 7.58 Metagenome 3300019364 *Microbiome Permanent Draft Mouse fecal microbial communities from Athens, Georgia, USA Mouse fecal microbial communities from Athens, Georgia, USA - 8A1D Georgia Genomics Facility 3300019364 Metagenome Analysis megahit released by JGI data releasing policy No Yes ptu@live.unc.edu Pengcheng Tu No Host-associated Mammals Large intestine Digestive system Fecal mouse fecal 33.9519 -83.3576 34925949 45920 76 0 78 0 0.0 Metagenome 3300004267 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio DOE Joint Genome Institute (JGI) 3300004267 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes sgtringe@lbl.gov, cpan@ou.edu Susannah Tringe, Chongle Pan No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 9.1086 -79.8436 491010646 1632131 325 23 901 38 SRX2779534 Unrestricted 0.0 Metagenome 3300041740 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_355 MetaG AgResearch, New Zealand, Mosgeil 3300041740 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1539653523 3068945 277 26 1106 40 0.0 Metagenome 3300045147 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_1_B DOE Joint Genome Institute (JGI) 3300045147 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 128997015 144461 86 2 92 3 Unrestricted 104.69 Metagenome 3300065652 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 828a in Etizkom, Alberta, Canada - S00JY_0375 Microbiome Insights 3300065652 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.3635388 -111.0815252 57535623 87996 48 1 100 2 0.0 Metagenome 3300038614 *Microbiome Permanent Draft Seawater microbial communities from the Baltic Proper 10 km east of Oland, Sweden Seawater microbial communities from the Baltic Proper 10 km east of Oland, Sweden - LMO_120806 Royal Institute of Technology 3300038614 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 26667648 Environmental Aquatic Unclassified Marine Unclassified Seawater 56.93085 17.060667 16357454 39846 23 7 48 9 SRX1050751 0.0 Metagenome 3300001514 *Microbiome Permanent Draft Human axilla skin microbial communities from the University of Liverpool, UK Human axilla skin microbial communities from the University of Liverpool, UK - AX14 3300001514 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Host-associated Mammals: Human Skin Integumentary system Axilla/Armpit Human axilla skin 53.3484 -3.009 25192857 49097 65 0 124 0 0.0 Metagenome 3300011785 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00660 Weill Cornell Medical College 3300011785 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.79 -73.95 42805061 58778 16 0 17 0 SRX822627 0.0 Metagenome 3300026986 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 E3 (3) (SPAdes) DOE Joint Genome Institute (JGI) 3300026986 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 83148408 121482 104 0 98 0 SRX3311651 Unrestricted 0.0 Metagenome 3300013547 *Microbiome Permanent Draft Indoor microbial communities from home and occupant surfaces in Illinois, USA Indoor microbial communities from pet occupant in Illinois, USA - Dog Nose - Dog_04.2-Dog_Nose_Day4 University of Chicago 3300013547 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Skin Integumentary system Rhinarium Dog 41.9 -87.6 442451 1073 7 0 7 0 SRX661119 0.0 Metagenome 3300050010 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 E1 10-14 DOE Joint Genome Institute (JGI) 3300050010 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3533 19.047 580021342 806864 180 12 226 19 Restricted 17.0 Metagenome 7000000707 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763961826 replicate 2 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000707 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 72662484 125926 0 0 0 0 0.0 Metagenome 3300020033 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_12JUL2016_LD2 MG DOE Joint Genome Institute (JGI) 3300020033 Metagenome Analysis spades v. 3.10.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 21594925 41968 2 18 1 16 SRX3923147 Unrestricted 116.75 Metagenome 3300014280 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00193 Weill Cornell Medical College 3300014280 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.61 -73.99 14254855 18779 11 0 17 0 SRX822172 0.0 Metagenome 3300046463 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere DOE Joint Genome Institute (JGI) 3300046463 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1215 -123.271 1214845260 1939526 385 152 599 390 Unrestricted 15.29 Metagenome 3300070782 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_010-M-20190109-COMP-DNA1 3300070782 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 37544184 111850 99 6 160 12 0.0 Metagenome 3300030734 *Microbiome Permanent Draft Wheat crown rot disease influences the structure and diversity of wheat-associated microbiome Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 5 University of Western Sydney 3300030734 Metagenome Analysis MEGAHIT v. 1.0 released by JGI data releasing policy No Yes h.liu2@westernsydney.edu.au hongwei liu No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soils -27.565194 151.864444 65421858 155917 169 17 323 49 0.0 Metagenome 3300005165 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgHMC DOE Joint Genome Institute (JGI) 3300005165 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Agricultural land Soil Unclassified Soil 45.54 -73.72 532210331 1722737 635 32 1208 73 SRX2739586 Unrestricted 0.0 Metagenome 7000000156 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763901136 replicate 1 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000156 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 112068546 186501 0 0 0 0 0.0 Metagenome 3300029996 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P106V1 Beijing Genomics Institute (BGI) 3300029996 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 212135591 273218 142 0 255 0 0.0 Metagenome 3300033508 *Microbiome Permanent Draft Sinkhole microbial mat communities from Lake Huron, Michigan, USA Sinkhole microbial mat communities from Lake Huron, Michigan, USA - SG0290 University of Michigan 3300033508 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy Yes Yes sgrim01@gmail.com Sharon Grim No Environmental Aquatic Sinkhole Freshwater Unclassified microbial mat 45.19843 -83.32721 423313157 527195 156 19 177 24 0.0 Metagenome 3300043350 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 169-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043350 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9374 -107.0117 456965281 1281540 487 17 885 26 Unrestricted 6.42 Metagenome 3300060452 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210615_19_13 DOE Joint Genome Institute (JGI) 3300060452 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 468754047 689733 230 113 305 147 Unrestricted 40.11 Metagenome 3300009435 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 DOE Joint Genome Institute (JGI) 3300009435 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 578783628 1149796 489 170 658 282 SRX2999529 Unrestricted 0.0 Metagenome 3300031252 *Microbiome Permanent Draft Extreme environments viral communities from various locations Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SW 0.2 DOE Joint Genome Institute (JGI) 3300031252 Metagenome Analysis spades v. 3.12.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Coastal Marine Unclassified sackhole brine 71.3731 -156.5049 147296238 393678 221 113 347 188 SRX5650439 Unrestricted 213.26 Metagenome 3300012790 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - DID2925_E24_FP4 MG DOE Joint Genome Institute (JGI) 3300012790 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 9673476 11065 8 0 18 0 SRX3564788 Unrestricted 0.0 Metagenome 3300049197 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - A14_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049197 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 183845144 409946 365 13 696 24 Unrestricted 0.0 Metagenome 3300037608 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Coal bed water microbial communities from the Powder River Basin, Montana, United States - T1YRFGP DOE Joint Genome Institute (JGI) 3300037608 Metagenome Analysis metaspades v. 3.13.0 Yes Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Aquatic Groundwater Deep subsurface Coalbed methane well water coal bed water 45.435 -106.392 605169585 790841 307 4 416 3 SRX9382708 Unrestricted 24.44 Metagenome 3300037487 *Microbiome Permanent Draft Sediment microbial communities from various lakes in Switzerland Sediment microbial communities from Lake Zurich, Zurich, Switzerland - LZ_5 DOE Joint Genome Institute (JGI) 3300037487 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mark.lever@usys.ethz.ch Mark Alexander Lever No Environmental Aquatic Lake Freshwater Sediment sediment 47.2832 8.5937 512442809 878790 289 3 472 7 SRX9148069 Unrestricted 15.05 Metagenome 3300040524 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 024_R1_022417 University of Maryland 3300040524 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.29190833 25.14645 2668818 7131 5 0 9 2 0.0 Metagenome 3300029008 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 326_12M Beijing Genomics Institute (BGI) 3300029008 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 67282830 79759 73 0 114 0 ERX491075 0.0 Metagenome 3300015072 *Microbiome Permanent Draft Danish lakes Microbial communities Depth profiles Lake Almind and Hund Freshwater microbial communities from Lake Almind, Silkeborg, Region Midtjylland, Denmark - ALS_03.08.12_15m metaSPAdes assemblies Odense University Hospital 3300015072 Metagenome Analysis metaSPAdes 3.7.1 released by JGI data releasing policy Yes Yes atreusch@biology.sdu.dk; kamillasjogaard@biology.sdu.dk Alexander Treusch; Kamilla Sj?gaard No Environmental Aquatic Lake Freshwater Unclassified Freshwater 56.148 9.546 6.8 44558440 159464 34 12 91 23 0.0 Metagenome 3300046169 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_PBmetag_120718.NP1 DOE Joint Genome Institute (JGI) 3300046169 Metagenome Analysis metaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 346873443 366436 160 14 151 11 Unrestricted 0.0 Metagenome 3300001494 *Microbiome Permanent Draft Human axilla skin microbial communities from the University of Liverpool, UK Human axilla skin microbial communities from the University of Liverpool, UK - AX19 3300001494 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Host-associated Mammals: Human Skin Integumentary system Axilla/Armpit Human axilla skin 53.3484 -3.009 9055454 18106 22 0 40 0 0.0 Metagenome 3300028193 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_80m DOE Joint Genome Institute (JGI) 3300028193 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 564740461 1095904 649 1 1035 3 SRX5244775 Unrestricted 17.18 Metagenome 3300002799 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G07K4-12 DOE Joint Genome Institute (JGI) 3300002799 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 39812 138 12 0 19 1 SRX1991265 Unrestricted 0.0 Metagenome 7000000531 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 765701615 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000531 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 221407043 360776 0 0 0 0 0.0 Metagenome 3300001273 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion v3 (version 3) DOE Joint Genome Institute (JGI) 3300001273 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 21720603 45923 24 40 65 70 Unrestricted 0.0 Metagenome 3300057191 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2016-0043 DOE Joint Genome Institute (JGI) 3300057191 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.617 -83.009 539169883 1157226 431 142 696 199 Unrestricted 23.78 Metagenome 3300012074 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ085 MetaG DOE Joint Genome Institute (JGI) 3300012074 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.7459 -74.761 160062413 291679 146 118 289 198 SRX3539724 Unrestricted 0.0 Metagenome 3300028519 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 5 Selected contigs with viral hallmark genes 2 Autonomous University of Barcelona 3300028519 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 2863798 4137 0 0 0 0 0.0 Metagenome 3300047298 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mae Ngao, Mae Hong Son, Thailand - ME060032 DOE Joint Genome Institute (JGI) 3300047298 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 17.846 97.9764 76131788 180766 259 22 456 26 Unrestricted 51.32 Metagenome 3300031181 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_3 DOE Joint Genome Institute (JGI) 3300031181 Metagenome Analysis spades v. 3.12.0 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 100029150 140277 114 0 168 0 SRX5661310 Unrestricted 165.55 Metagenome 3300053176 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S29_B_D45 hydrophobic DOE Joint Genome Institute (JGI) 3300053176 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 548134415 798737 257 8 363 6 Restricted 0.0 Metagenome 3300036952 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - SCT 26 II DOE Joint Genome Institute (JGI) 3300036952 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 808628617 1603262 730 93 1070 168 SRX8360247 Unrestricted 10.29 Metagenome 7000000264 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 370425937 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000264 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 30752515 66955 0 0 0 0 0.0 Metagenome 3300025066 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025066 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.51 -76.2 142666492 342418 1 0 6 0 SRX2928474 Unrestricted 0.0 Metagenome 3300017647 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Organic Plus compost microbial communities from Emeryville, California, USA - eDNA 3rd pass 37_C Kraft OP (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017647 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes JMGladden@lbl.gov John Gladden No Engineered Solid waste Composting Mixed feedstock Commercial compost compost 37.83 -122.29 448939775 705231 472 3 655 9 SRX3901663, SRX3901664 Unrestricted 0.0 Metagenome 3300028646 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_2 DOE Joint Genome Institute (JGI) 3300028646 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 499280535 1341012 851 113 1556 183 SRX5281170 Unrestricted 0.0 Metagenome 3300022406 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL3WBGP3 JM84 AGRF 3300022406 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996531 115.533257 50273371 83262 40 1 53 2 0.0 Metagenome 3300028358 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF #472 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028358 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 58948163 101963 21 1 42 1 SRX3296276 Unrestricted 0.0 Metagenome 3300006973 *Microbiome Permanent Draft Non-marine hypersaline water viral communities from Mallorca, Spain, POOL 1-2-3 virus M8 Mallorca 14 Non-marine hypersaline water viral communities from Mallorca, Spain, 2014 - Pool_2_ virus M8 University of Alicante 3300006973 Metagenome Analysis Spades_3.6 released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline water 39.333 3.05 416628 1007 14 0 3 0 0.0 Metagenome 3300025946 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqC_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025946 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.209766 -122.033424 56107505 129421 131 1 202 0 SRX7142970 Unrestricted 0.0 Metagenome 3300025317 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025317 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.53 -107.78 1974598719 3497109 2822 20 4608 42 SRX1990989 Unrestricted 0.0 Metagenome 3300027821 *Microbiome Permanent Draft Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027821 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade Yes 30397342 Environmental Terrestrial Unclassified Soil Unclassified Surface soil 40.7999 -76.3402 907276888 2335070 648 16 1331 41 SRX2838883 Unrestricted 0.0 Metagenome 3300037469 *Microbiome Permanent Draft Soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA Soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA - S5.2017.0 DOE Joint Genome Institute (JGI) 3300037469 Metagenome Analysis metaspades v. 3.13.0 Yes Yes adina@iastate.edu Adina Howe No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.0127 -93.7445 2096961584 3615646 573 3 984 6 SRX9161661 Unrestricted 15.17 Metagenome 3300042886 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME10Apr2001-rr0397 DOE Joint Genome Institute (JGI) 3300042886 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 921011067 1437936 181 150 251 159 Unrestricted 25.34 Metagenome 3300039249 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P7_D5 DOE Joint Genome Institute (JGI) 3300039249 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 262538712 378562 66 1 108 4 SRX9635042, SRX9635041 Unrestricted 0.0 Metagenome 3300005978 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius loisae LIZARD ISLAND.1 DOE Joint Genome Institute (JGI) 3300005978 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 617874741 1321419 57 8 101 10 SRX2712110 Unrestricted 0.0 Metagenome 3300025785 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE12Aug09 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025785 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 150669824 310312 75 49 146 62 SRX2565199 Unrestricted 0.0 Metagenome 3300045595 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_USB_063 DOE Joint Genome Institute (JGI) 3300045595 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 214745800 340027 242 5 346 9 SRX12656289 Unrestricted 55.68 Metagenome 3300009873 *Microbiome Permanent Draft Activated sludge microbial community analysis in wastewater treatment plant from Tai Wan Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plant Beijing Novogene Bioinformatics Technology Co., Ltd 3300009873 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes limeng848@gmail.com MENG LI No Engineered Wastewater Unclassified Activated Sludge Unclassified Wastewater 24.0 120.0 3176721533 5175785 1582 41 2602 81 0.0 Metagenome 3300031578 *Microbiome Permanent Draft Soil microbial communities from Risofladan, Vaasa, Finland Soil microbial communities from Risofladan, Vaasa, Finland - TR-2 DOE Joint Genome Institute (JGI) 3300031578 Metagenome Analysis spades v. 3.12.0 Yes Yes eva.hogfors-ronnholm@novia.fi Eva Hogfors-Ronnholm Yes Environmental Terrestrial Coastal area Soil Acid sulfate soil soil 63.0472 21.7116 1885094386 4390133 496 12 749 22 SRX5356281 Unrestricted 17.8 Metagenome 3300002398 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 10AUG2009 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002398 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu, tmcmahon@engr.wisc.edu; NNIvanova@lbl.gov Katherine McMahon, Katherine McMahon; Natalia Ivanova Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 51073725 113638 71 23 156 42 SRX1987803 Unrestricted 0.0 Metagenome 3300020573 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 17JUL2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020573 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 165546311 333974 122 18 217 29 SRX1989905 Unrestricted 0.0 Metagenome 3300008678 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 159753524 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008678 Metagenome Analysis SPADES 3.7.0 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 2369511 2714 1 0 2 0 0.0 Metagenome 3300008333 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 508703490 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008333 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 123636095 167978 80 0 98 0 0.0 Metagenome 3300040311 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, Pacific Southwest, CA, USA - SJER_002-M-20170314-COMP-DNA1 Battelle Memorial Institute 3300040311 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.10878 -119.73228 5528780 17603 80 6 134 10 0.0 Metagenome 3300013195 *Microbiome Permanent Draft Marine hypoxic microbial communities from the Gulf of Mexico, USA Marine hypoxic microbial communities from the Gulf of Mexico, USA - 10m_Station7_GOM_Metagenome Georgia Institute of Technology 3300013195 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 122690751 295984 87 3 131 8 SRX958767 0.0 Metagenome 2022920004 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP6 White Creek Site 3 v2 (version 2) DOE Joint Genome Institute (JGI) 2022920004 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23761787 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.733519 -110.404033 29209878 49180 590 0 27 0 Unrestricted 0.0 Metagenome 3300064768 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 595 in Falher, Alberta, Canada - S00JY_0765 Microbiome Insights 3300064768 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 55.45243753 -117.122471 215550460 295463 57 2 101 4 0.0 Metagenome 3300007100 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764305738 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007100 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 121526301 163635 114 0 122 0 0.0 Metagenome 3300040103 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_004-O-20160803-COMP-DNA1 Battelle Memorial Institute 3300040103 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 12182787 33118 36 9 60 16 0.0 Metagenome 3300054071 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_8_40 re-annotation DOE Joint Genome Institute (JGI) 3300054071 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 405153957 784798 172 2 295 1 SRX3002152 0.0 Metagenome 3300046091 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_17 DOE Joint Genome Institute (JGI) 3300046091 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9223 -106.9493 29961041 107966 111 5 178 7 Unrestricted 0.0 Metagenome 3300028759 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1 DOE Joint Genome Institute (JGI) 3300028759 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 975066726 2203565 495 150 810 235 SRX5355865 Unrestricted 0.0 Metagenome 3300002153 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Marine eukaryotic phytoplankton communities from the Norwegian Sea - 20m ARK-7M Metagenome DOE Joint Genome Institute (JGI) 3300002153 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 500866322 1164511 413 404 624 684 SRX2554366, SRX2554364, SRX2554365 Unrestricted 0.0 Metagenome 3300014635 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01358 Weill Cornell Medical College 3300014635 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.85 -73.82 22459558 31082 6 0 8 0 SRX823298 0.0 Metagenome 3300015286 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_NF_01AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015286 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 128539816 239517 28 44 48 60 SRX3925938 Unrestricted 9.72 Metagenome 3300042996 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Oculatella coburnii WJT66-NPBG6A and co-occurring heterotrophs from granitic soil from Wonderland of Rocks, Joshua Tree National Park, Mojave Desert, CA, USA - 20200702_35 DOE Joint Genome Institute (JGI) 3300042996 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Desert Soil Unclassified Granitic soil 34.0655 -116.1702 32111367 41048 18 5 26 3 SRX14871059 Unrestricted 377.55 Metagenome 3300027428 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A2-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300027428 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 26008736 83912 131 2 236 4 SRX1991137 Unrestricted 0.0 Metagenome 3300038525 *Microbiome Permanent Draft Organic and conventional farm associated microbial communities from Canada and USA Wastewater microbial communities from natural feedlot in Alberta, Canada - WW93 Colorado State University 3300038525 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 53.5 -112.06 133002349 259252 196 6 321 8 0.0 Metagenome 3300035174 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 3_4.5_N_12_3 DOE Joint Genome Institute (JGI) 3300035174 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1866 -2.2146 1798292561 3948502 428 2 702 4 SRX8232511 Unrestricted 9.56 Metagenome 3300001625 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF014 DOE Joint Genome Institute (JGI) 3300001625 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 2128820 6474 20 1 51 0 SRX2014325 Unrestricted 0.0 Metagenome 3300032172 *Microbiome Permanent Draft Microbial communities from the deep biosphere Subsurface marine sediment microbial communities from the Pacific Ocean - 1301_1a1b Forsterite+Fo90 olivine re-assembly Marine Biological Laboratory 3300032172 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Oceanic Marine Sediment Marine subsurface sediement 47.7535 -127.763883 64787728 149216 88 14 159 31 0.0 Metagenome 3300030246 *Microbiome Permanent Draft Homeothermic animals guts microbial communities from various locations Human feces microbial communities from China - H4_S24-7 University of Queensland 3300030246 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces -27.4954258 153.0098361 2574953 2153 1 0 1 0 0.0 Metagenome 3300069255 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_003-M-20210622-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069255 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 45.831516 -122.018608 3072198400 6638642 1049 168 1904 241 0.0 Metagenome 3300007084 *Microbiome Permanent Draft Non-marine hypersaline water viral communities from Salar of UYUNI 2014 (Chile) Non-marine hypersaline water viral communities from Salar Uyuni, Bolivia - ZN 5 Uyuni 2014 University of Alicante 3300007084 Metagenome Analysis IDBA 1.1.1 PRE correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline water -20.333333 -67.7 69488854 211144 0 0 3 1 0.0 Metagenome 3300000232 *Microbiome Draft Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- PC08_64 DOE Joint Genome Institute (JGI) 3300000232 Metagenome Analysis released based on JGI ITS Yes Yes jlm80@psu.edu Jennifer Macalady Yes 25620962 Environmental Aquatic Groundwater Freshwater Cave water Groundwater 43.383333 12.95 270071044 568490 289 14 489 30 Unrestricted 0.0 Metagenome 3300064940 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 744 in Lacombe, Alberta, Canada - S00JY_0215 Microbiome Insights 3300064940 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.27312777 -113.310707 1788350 2926 14 0 22 0 0.0 Metagenome 3300049725 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 E3 30-34 DOE Joint Genome Institute (JGI) 3300049725 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.0466 518930320 796103 213 1 328 1 Restricted 13.49 Metagenome 3300048128 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_151014.NP1 DOE Joint Genome Institute (JGI) 3300048128 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 741947696 1756976 558 94 909 177 Unrestricted 11.4 Metagenome 3300042810 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Enriched soil microbial communities from Old Woman Creek wetland in Ohio, USA - Methanotroph_Enrichment_5 NMDC pilot DOE Joint Genome Institute (JGI) 3300042810 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified Enriched soil 40.178 -81.073 321823548 557171 252 5 373 7 SRX2752460 0.0 Metagenome 3300040236 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_013-O-31-27-20131122-GEN-DNA1 Argonne National Laboratory 3300040236 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 7496307 23821 39 8 86 15 ERX2134001 0.0 Metagenome 3300025021 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG08_land_8/20/14_0.20 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025021 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 599423599 1071045 689 10 1020 19 SRX2725929 Unrestricted 0.0 Metagenome 3300031594 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - CB9_20m DOE Joint Genome Institute (JGI) 3300031594 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified Marine 77.9995 -150.0065 615589049 1236563 353 254 629 411 SRX5797840 Unrestricted 19.38 Metagenome 3300002374 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 04SEP2011 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002374 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 36573826 95985 60 13 140 29 SRX1989659 Unrestricted 0.0 Metagenome 3300021505 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-0-1_MG DOE Joint Genome Institute (JGI) 3300021505 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.0114 -110.5956 158973755 401829 288 4 511 5 SRX3982244 Unrestricted 8.84 Metagenome 3300023035 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-273 DOE Joint Genome Institute (JGI) 3300023035 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Unclassified Plant litter Unclassified leaf litter 40.2198 -122.9842 93072583 166325 55 27 58 65 SRX4392076 Unrestricted 47.03 Metagenome 3300001871 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-311 DOE Joint Genome Institute (JGI) 3300001871 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.28381 -156.5985 214665457 474712 218 3 358 7 SRX1990905 Unrestricted 0.0 Metagenome 3300005994 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 DOE Joint Genome Institute (JGI) 3300005994 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Soil 68.6135 -149.3144 1176759502 3302883 694 41 1256 74 SRX2739344 Unrestricted 0.0 Metagenome 3300005372 *Microbiome Permanent Draft Marine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica Marine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica - Winter Sample 10334 DOE Joint Genome Institute (JGI) 3300005372 Metagenome Analysis LUCY, PGA Assembler No Yes alison.murray@dri.edu Alison Murray No Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Marine -64.067 -64.767 1933492 2272 0 0 0 0 0.0 Metagenome 3300027866 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027866 Metagenome Analysis spades v. 3.11.1 Yes Yes pelletierda@ornl.gov Dale Pelletier No Host-associated Plants Endosphere Roots Unclassified Populus endosphere 35.8444 -83.9599 1135485256 3080772 544 41 1064 78 SRX2748475 Unrestricted 0.0 Metagenome 3300036759 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_Dec_plot1_rep2 DOE Joint Genome Institute (JGI) 3300036759 Metagenome Analysis metaspades v. 3.13.0 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6539 -80.6288 1350282917 2187191 397 20 689 20 SRX8181457 Unrestricted 14.85 Metagenome 3300060889 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_004-O-20210622-comp-1 DOE Joint Genome Institute (JGI) 3300060889 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 45.822941 -121.998707 917531332 1560190 302 68 498 101 Unrestricted 14.96 Metagenome 3300071028 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_043-O-20180718-COMP-DNA1 3300071028 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 5326014 17655 28 4 62 10 0.0 Metagenome 3300017560 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched backyard soil microbial communities from Emeryville, California, USA - eDNA 3rd pass 30_C BE-Lig BY (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017560 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes JMGladden@lbl.gov John Gladden No Environmental Terrestrial Unclassified Soil Unclassified soil 37.83 -122.29 714019368 1281233 963 52 1317 76 SRX4808940, SRX4808941 Unrestricted 0.0 Metagenome 3300027903 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027903 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Saprolite Vadose zone soil 39.7291 -123.6419 2426906201 5568031 901 45 1673 90 SRX2933105 Unrestricted 0.0 Metagenome 3300035198 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_middle DOE Joint Genome Institute (JGI) 3300035198 Metagenome Analysis metaspades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5106 -110.3566 1528848242 3790516 1706 90 3027 128 SRX7707105, SRX7707106 Unrestricted 0.0 Metagenome 3300070351 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dakota Coteau Field Site, North Dakota, USA - DCFS_004-M-20190729-COMP-DNA1 3300070351 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 6745275 21829 50 7 101 15 0.0 Metagenome 3300070724 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Mountain Lake Biological Station, Virginia, USA - MLBS_002-O-20180612-COMP-DNA1 3300070724 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 1877287 6299 21 2 44 5 0.0 Metagenome 3300007355 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765640925 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007355 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 109878523 189410 87 0 117 1 0.0 Metagenome 3300021446 *Microbiome Permanent Draft Longitudinal study of halite endolithic microbial communities Halite endolithic microbial communities from Salar Grande N, Atacama Desert, Chile - SG1-N-2015-12 Johns Hopkins University 3300021446 Metagenome Analysis metaSPAdes v.3.11.1 released by JGI data releasing policy Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Halite pinnacle -20.930197 -70.013428 790976118 1164211 159 12 276 9 0.0 Metagenome 3300044485 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - WIN2-9-19-19 DOE Joint Genome Institute (JGI) 3300044485 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.4183 -120.5944 531955684 1362841 551 49 970 91 Restricted 6.4 Metagenome 3300004449 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Marine microbial communities from Galveston Bay (CSEDA12C HDTS- fraction 12) Shell Corporation 3300004449 Metagenome Analysis SOAPdenovo released per JGI data release policy No Yes ebalsop@lbl.gov, nicolas.tsesmetzis@shell.com Eric Alsop, Nicolas Tsesmetzis No Environmental Aquatic Oceanic Marine Sediment sediment 29.5 -94.76 101858732 371154 220 3 502 14 0.0 Metagenome 3300034894 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A1A0.2 DOE Joint Genome Institute (JGI) 3300034894 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 368121116 1147963 780 12 1404 28 SRX7658968 Unrestricted 5.8 Metagenome 3300027223 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1548B-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027223 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2319 -123.8812 163824372 349510 175 20 256 38 SRX2753630 Unrestricted 0.0 Metagenome 3300049239 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB17 DOE Joint Genome Institute (JGI) 3300049239 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 11397459 30290 70 4 153 4 Unrestricted 15.12 Metagenome 3300005219 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailB_D2 DOE Joint Genome Institute (JGI) 3300005219 Metagenome Analysis Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.107536 -121.649704 1262966923 4344126 1324 61 2960 112 SRX7144831 Unrestricted 0.0 Metagenome 3300044539 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME15Mar2000-rr0884 DOE Joint Genome Institute (JGI) 3300044539 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 726723629 1121668 262 103 337 113 Unrestricted 24.35 Metagenome 3300012098 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Florida, USA - TSFL050 MetaG DOE Joint Genome Institute (JGI) 3300012098 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 27.6228 -81.8037 52586601 86539 33 37 48 79 SRX3539522 Unrestricted 0.0 Metagenome 2170459006 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 0-10cm 454 Life Sciences 2170459006 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.804241 -0.372114 309490820 848613 336 15 620 24 0.0 Metagenome 3300043613 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 142-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043613 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9363 -107.013 681849010 1626815 451 40 774 62 Unrestricted 6.9 Metagenome 3300026170 *Microbiome Permanent Draft Utah desert microbiome from environmental samples near Hanksville, Utah, USA Dry sediment microbial communities from Utah desert near Hanksville, Utah, USA - RSL4 McGill University 3300026170 Metagenome Analysis canu v. 1.7 released by Catherine Maggiori No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Terrestrial Unclassified Soil Desert Dry sediment 38.41662884 -110.78428642 4569671 7055 0 0 0 0 0.0 Metagenome 3300041520 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Bulk soil microbial community from Lincoln, Canterbury, New Zealand - BS18_11 MetaG AgResearch, New Zealand, Mosgeil 3300041520 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Environmental Terrestrial Unclassified Soil Agricultural land Dairy farm pasture soil -43.648506 172.343549 624279006 1290114 156 16 549 61 0.0 Metagenome 3300001478 *Microbiome Permanent Draft Sheep rumen microbial communities from New Zealand from high and low methane emitting sheep Sheep rumen microbial communities from New Zealand - Rank06_low DOE Joint Genome Institute (JGI) 3300001478 Metagenome Analysis Velvet Released because these are assemblies from SRA data No Yes janine.kamke@agresearch.co.nz, janine.kamke@uni-wuerzburg.de Janine Kamke No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen -40.352 175.608 245215971 491132 543 21 892 37 0.0 Metagenome 3300020452 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078) CEA Genoscope 3300020452 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 43.6906 -16.8555 1189970410 2893665 497 68 862 149 0.0 Metagenome 3300039075 *Microbiome Permanent Draft Freshwater lake viral communities from Lake Michigan, near Chicago, USA Freshwater lake viral communities from Lake Michigan, near Chicago, USA- Wilmette140610..1V Genewiz Inc., Loyola University 3300039075 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 42.0791 -87.683 33885190 62320 24 0 31 0 0.0 Metagenome 3300000925 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 E3 (2) DOE Joint Genome Institute (JGI) 3300000925 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 62995442 117360 73 1 114 0 SRX3311654 Unrestricted 0.0 Metagenome 3300000490 *Microbiome Permanent Draft Honey bee gut microbial communities from West Haven, Conneticut, USA Honey bee gut microbial communities from West Haven, Conneticut, USA - Gilliamella SCG AB-598-L16 Broad Institute 3300000490 Metagenome Analysis released per JGI data release policy No Yes philipp.engel@yale.edu Philipp Engel No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Honey bee gut 32.2743 -110.9388 6754833 16076 17 0 321 0 0.0 Metagenome 3300014602 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01352 Weill Cornell Medical College 3300014602 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.85 -73.82 23322747 37777 19 0 23 0 SRX823292 0.0 Metagenome 3300005884 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_302 DOE Joint Genome Institute (JGI) 3300005884 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 227711316 774118 410 12 800 24 SRX2564885, SRX2581047 Unrestricted 0.0 Metagenome 3300027675 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027675 Metagenome Analysis spades v. 3.11.1 Yes Yes mike.wilkins@colostate.edu Michael Wilkins Yes 30086797 Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0956 -99.1001 430644862 990671 501 13 889 18 SRX2753772 Unrestricted 0.0 Metagenome 3300000205 *Microbiome Draft Feedstock adapted compost microbial communities from Newby Island compost facility, Milpitas CA Feedstock adapted compost microbial communities from Newby Island compost facility, Milpitas, CA, USA - Passage 4_Xylan DOE Joint Genome Institute (JGI) 3300000205 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Solid waste Composting Feedstock Unclassified Feedstock adapted compost 37.454581 -121.928712 125878829 182439 96 4 129 2 Unrestricted 0.0 Metagenome 3300004188 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 64_LOW9 DOE Joint Genome Institute (JGI) 3300004188 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 76312073 178188 37 0 51 0 SRX2720764 Unrestricted 0.0 Metagenome 3300013727 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100397 University of Pennsylvania 3300013727 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14923928 37833 41 21 91 35 SRX756260 0.0 Metagenome 3300018033 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10 DOE Joint Genome Institute (JGI) 3300018033 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 1312260430 2508828 671 32 1100 60 SRX3960104 Unrestricted 7.59 Metagenome 3300042255 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA MBR feed microbial communities from membrane bioreactor in Denver, Colorado, USA - FD_D10_01 DOE Joint Genome Institute (JGI) 3300042255 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Wastewater Mine water Industrial wastewater Produced water MBR feed 39.7823 -104.9101 60209266 96978 80 3 92 4 Unrestricted 165.22 Metagenome 3300030001 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N1_2 DOE Joint Genome Institute (JGI) 3300030001 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 470258055 989391 642 52 1061 95 SRX5356681 Unrestricted 13.42 Metagenome 3300029700 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37322 Beijing Genomics Institute (BGI) 3300029700 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 186064096 234922 170 0 233 2 0.0 Metagenome 3300044820 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Soil microbial communities from peatland in Alberta, Canada - SB-91-sedgy 0-10 cm DOE Joint Genome Institute (JGI) 3300044820 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4732 -114.8724 518863696 869136 270 23 438 46 Unrestricted 13.45 Metagenome 3300040027 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONZ_003-M-20160714-COMP-DNA1 Battelle Memorial Institute 3300040027 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.10077 -96.56309 15712126 48095 56 4 144 3 0.0 Metagenome 3300036519 *Microbiome Permanent Draft Extreme environments viral communities from various locations Glacier ice viral communities from Ngari, Tibet, China - 45_GP2_126.8 NXT DOE Joint Genome Institute (JGI) 3300036519 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Ice Freshwater Glacier ice 35.2833 81.4833 191684871 372524 127 12 188 16 SRX8846357 Unrestricted 14.04 Metagenome 3300041839 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - TR_29_wk_5 DOE Joint Genome Institute (JGI) 3300041839 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9726 -107.062 92418160 280869 206 10 373 19 SRX14809916 Unrestricted 6.66 Metagenome 3300012577 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100256 University of Pennsylvania 3300012577 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14644786 31446 7 0 11 0 SRX756645 0.0 Metagenome 3300006632 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_10_16 DOE Joint Genome Institute (JGI) 3300006632 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 12577384 33418 81 0 172 0 SRX2924397 Unrestricted 0.0 Metagenome 3300034984 *Microbiome Permanent Draft Extreme environments viral communities from various locations Sediment microbial communities from Lake Vrana, Zadar, Croatia - 11 bact DOE Joint Genome Institute (JGI) 3300034984 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Lake Freshwater Sediment sediment 43.9359 15.5428 195286934 421728 152 2 298 0 SRX8201786 Unrestricted 29.89 Metagenome 3300028952 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 397_4M Beijing Genomics Institute (BGI) 3300028952 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 19999250 22803 17 0 29 0 ERX491134 0.0 Metagenome 3300046500 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere DOE Joint Genome Institute (JGI) 3300046500 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.588 -123.194 506238461 829526 248 71 425 95 Unrestricted 22.01 Metagenome 3300022654 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Alfalfa, Gen0, Rep 2, Chloramphenicol (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022654 Metagenome Analysis spades v. 3.11.1-check Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4148 -119.8405 1505795329 2747476 2092 29 2859 46 SRX3963291 Unrestricted 17.02 Metagenome 3300039183 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Natural salt marsh sediment microbial communities from Fingringhoe Range, United Kingdom - W FRNM 1A University of York 3300039183 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Natural salt marsh sediment 51.831817 0.9687 65620565 158639 113 0 194 0 0.0 Metagenome 3300036358 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C4-9B DOE Joint Genome Institute (JGI) 3300036358 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 123379074 384770 272 4 453 12 SRX8786922 Unrestricted 4.65 Metagenome 3300047493 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Western Region, Iceland - Sphagnum magellanicum C_MAG_ICE DOE Joint Genome Institute (JGI) 3300047493 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 1509563563 2481487 559 156 828 282 SRX14786511 Unrestricted 8.27 Metagenome 3300025652 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes) (version 4) DOE Joint Genome Institute (JGI) 3300025652 Metagenome Analysis spades v. 3.11.1 Yes Yes chenf@umces.edu; bcampb7@clemson.edu Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.124826 -75.260873 371102140 807442 47 4 75 6 SRX3300988, SRX3300989, SRX2745058 Unrestricted 0.0 Metagenome 3300047274 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Colorado River, Arizona, USA - NASQAN2014_185 DOE Joint Genome Institute (JGI) 3300047274 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 32.7186 -114.7188 431128693 795015 334 33 532 47 Unrestricted 18.12 Metagenome 3300005690 *Microbiome Permanent Draft Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia Enhanced biological phosphorus removal bioreactor viral communities from the University of Queensland, Australia - SBR4-V93108 Phage Sequencing University of Queensland 3300005690 Metagenome Analysis CLC 6.0 Released per Connor Skennerton (Sep 15, 2015) No Yes c.skennerton@gmail.com Connor Skennerton No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor lab-scale EBPR bioreactor -27.49999 153.012098 17316013 32991 6 0 15 0 0.0 Metagenome 3300048812 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 P2 10-14 DOE Joint Genome Institute (JGI) 3300048812 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3534 19.0472 671854964 1016245 152 4 249 12 Restricted 12.9 Metagenome 3300010940 *Microbiome Permanent Draft Wastewater viral communities and vesicles from water purifying plant in Alicante,Spain Wastewater viral communities and vesicles from water purifying plant in Alicante,Spain - replicate C0 Autonomous University of Barcelona 3300010940 Metagenome Analysis SPAdes-3.8.1-Linux released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Engineered Wastewater Unclassified Industrial wastewater Unclassified wastewater 38.34 -0.48 3499041 8479 3 0 2 0 0.0 Metagenome 3300017653 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched backyard soil microbial communities from Emeryville, California, USA - eDNA 3rd pass 37_C BE-Lig BY (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017653 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes JMGladden@lbl.gov John Gladden No Environmental Terrestrial Unclassified Soil Unclassified soil 37.83 -122.29 765389497 1280428 1269 16 1706 36 SRX3901613, SRX3901614 Unrestricted 0.0 Metagenome 3300002415 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP16-I2 3300002415 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300004694 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE17Sep08 (version 2) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300004694 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 201969955 632673 137 108 276 411 SRX2565223 Unrestricted 0.0 Metagenome 3300038680 *Microbiome Permanent Draft Host-associated bacterial communities of pinewood nematode - Chinese Academy of Agricultural Sciences Pinewood nematode-associated bacterial communities from Chinese Academy of Agricultural Sciences, China - symbio_PWN Irkutsk Antiplague Research Institute of Rospotrebnadzor 3300038680 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Host-associated Invertebrates Unclassified Nematoda Unclassified Pinewood nematode-associated 39.96 116.32 62478328 116452 30 1 58 2 SRX111044 0.0 Metagenome 3300011589 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00895 Weill Cornell Medical College 3300011589 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.74 -73.93 27660604 37921 8 0 13 0 SRX822858 0.0 Metagenome 3300049348 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MAF3 DOE Joint Genome Institute (JGI) 3300049348 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 250132235 721114 372 4 614 9 Unrestricted 7.03 Metagenome 3300000949 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY94 J. Craig Venter Institute (JCVI) 3300000949 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 763008964 2947437 151 61 368 107 0.0 Metagenome 2065487001 *Microbiome Permanent Draft Human fecal microbial communities from Baylor College of Medicine, Texas, USA, mock community Human fecal microbial communities from Baylor College of Medicine, Texas, USA, mock community - bke_il_soap Baylor College of Medicine 2065487001 Metagenome Analysis released per JGI data release policy No Yes xqin@bcm.tmc.edu Xiang Qin No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 29.7 -95.38 132938616 290423 104 0 141 0 0.0 Metagenome 3300049656 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_B_0_drought DOE Joint Genome Institute (JGI) 3300049656 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 427292186 889693 456 28 992 44 Unrestricted 15.83 Metagenome 3300014867 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT433_16_10D DOE Joint Genome Institute (JGI) 3300014867 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9228 -106.9519 172959612 404319 211 11 453 16 SRX3780473 Unrestricted 4.34 Metagenome 3300042822 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140 NMDC pilot DOE Joint Genome Institute (JGI) 3300042822 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92028116 -106.94891893 1100959365 2761289 653 24 1188 40 SRX5354675 0.0 Metagenome 3300019754 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - BB_7_MG DOE Joint Genome Institute (JGI) 3300019754 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Microbial mats Freshwater microbial mat 38.7906 -75.1644 219737795 401486 515 42 823 52 SRX3982599 Unrestricted 12.21 Metagenome 3300001580 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes from Suncor taillings pond 6 2012TP6_6 McGill University 3300001580 Metagenome Analysis released per user request No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 57.05 -111.55 6.8-7.1 1282178941 3205687 1185 18 2164 34 0.0 Metagenome 3300002468 *Microbiome Permanent Draft Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland, that are sulfate-reducing Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland - 10_samples_coassembly 3300002468 Metagenome Analysis Ray, k=41 Released to public per Bagnoud Alexandre (March 10 2015) No Yes rizlan.bernier-latmani@epfl.ch Rizlan Bernier-Latmani Yes 27739431 Environmental Terrestrial Clay Deep subsurface Unclassified Deep subsurface 47.379 7.1648 7.5-8.5 143773111 146707 60 1 59 0 0.0 Metagenome 3300045824 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_3_D DOE Joint Genome Institute (JGI) 3300045824 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 163559099 196804 95 1 104 2 Unrestricted 134.67 Metagenome 3300053137 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere DOE Joint Genome Institute (JGI) 3300053137 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.588014 -123.194065 521274871 1067086 183 103 297 145 Unrestricted 9.18 Metagenome 3300040985 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - SI40M (SPAdes) Columbia University 3300040985 Metagenome Analysis spades v. 3.11.1 released by Simon Roux Yes Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Inlet Marine Unclassified marine 48.6 -123.5 85158244 122814 7 0 8 0 0.0 Metagenome 3300014889 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from two oxygen tension regimens in Lake Washington, USA Freshwater lake sediment microbial communities from high oxygen tension regimen in Lake Washington, USA - HO rep. 1 week 7 - H1_7_WGA University of Washington 3300014889 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 47.631156 -122.254601 8747617 11065 2 0 6 0 0.0 Metagenome 3300031671 *Microbiome Permanent Draft Soil microbial communities from Risofladan, Vaasa, Finland Soil microbial communities from Risofladan, Vaasa, Finland - OX-1 DOE Joint Genome Institute (JGI) 3300031671 Metagenome Analysis spades v. 3.12.0 Yes Yes eva.hogfors-ronnholm@novia.fi Eva Hogfors-Ronnholm Yes Environmental Terrestrial Coastal area Soil Acid sulfate soil soil 63.0472 21.7116 1395121319 2271269 529 7 834 9 SRX5356260 Unrestricted 31.81 Metagenome 3300031416 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLSG.R1 DOE Joint Genome Institute (JGI) 3300031416 Metagenome Analysis spades v. 3.12.0 Yes Yes icelab@berkeley.edu Steven Lindow No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 37.8864 -122.2981 489419221 700865 255 15 371 23 SRX5658948 Unrestricted 152.3 Metagenome 3300060440 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210608_12_13 DOE Joint Genome Institute (JGI) 3300060440 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 977297672 1440430 377 264 451 363 Unrestricted 29.68 Metagenome 3300040659 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_008-M-20170627-COMP-DNA1 Battelle Memorial Institute 3300040659 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 1543243 5103 24 0 28 3 0.0 Metagenome 3300043760 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Para, Brazil - P25 DOE Joint Genome Institute (JGI) 3300043760 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -3.3147 -54.9096 1125010976 2722763 676 8 1151 15 Unrestricted 7.23 Metagenome 3300043342 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-429 Genome Quebec 3300043342 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 51.149824 -101.079988 1471500190 3511691 365 35 603 79 0.0 Metagenome 3300009946 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 03 mira Center for Advanced Technologies in Genomics, Sao Paulo University 3300009946 Metagenome Analysis mira released per JGI data release policy No Yes joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 77991053 120938 399 3 537 5 0.0 Metagenome 3300053686 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_SEK2_3_to_SEK2 DOE Joint Genome Institute (JGI) 3300053686 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.245 1218596748 2160109 528 154 730 236 Unrestricted 0.0 Metagenome 3300039932 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_002-M-20160719-COMP-DNA1 Battelle Memorial Institute 3300039932 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 21796544 58384 51 2 98 2 0.0 Metagenome 3300026878 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgHPC (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026878 Metagenome Analysis spades v. 3.11.1 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 40933453 138282 120 1 237 8 SRX2521234 Unrestricted 0.0 Metagenome 3300004880 *Microbiome Permanent Draft Ecklonia radiata associated microbial communities from Long Bay, Malabar Australia Ecklonia radiata associated microbial communities from Long Bay, Malabar Australia H4 University of New South Wales 3300004880 Metagenome Analysis idba-ud released per JGI data release policy Yes Yes z.qiu@student.unsw.edu.au Zhiguang Qiu No Host-associated Algae Unclassified Unclassified Unclassified Ecklonia radiata associated 38980568 65183 27 5 40 11 0.0 Metagenome 3300028805 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 DNA GHGlow gp2 DOE Joint Genome Institute (JGI) 3300028805 Metagenome Analysis spades v. 3.11.1 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -40.3794 175.6106 3185923025 6084214 2890 48 4338 61 SRX5784957, SRX5784956 Unrestricted 0.0 Metagenome 3300008449 *Microbiome Permanent Draft Coastal sediment microbial communities from intertidal sand flat, Janssand, Germany Coastal sediment microbial communities from intertidal sand flat, Janssand, Germany_1868_binD Max Planck Institute for Plant Breeding Research 3300008449 Metagenome Analysis SPades released per JGI data release policy No Yes mmussman@gmail.com Marc Mussmann No Environmental Aquatic Coastal Marine Sediment sediment 53.736 7.6989 6903956 6459 1 0 1 0 0.0 Metagenome 3300012600 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100442 University of Pennsylvania 3300012600 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17725651 40175 24 1 37 0 SRX756556 0.0 Metagenome 3300011567 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00911 Weill Cornell Medical College 3300011567 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.74 -73.88 25618864 36122 13 0 18 0 SRX822874 0.0 Metagenome 3300020331 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100001971 (ERX555910-ERR599076) CEA Genoscope 3300020331 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 14.1468 -116.6821 297449221 689784 264 8 449 7 0.0 Metagenome 3300003134 *Microbiome Permanent Draft Continuous culture Bioreactor microbial community with low C:N ratio inoculated with sediment from German Wadden Sea Continuous culture Bioreactor microbial community with low C:N ratio inoculated with sediment from Wadden Sea, Germany - sample 4, day 46 3300003134 Metagenome Analysis MetaVelvet v. 0.3 Made public because these are downloaded from Genbank No Yes mstrous@mpi-bremen.de Marc Strous No Engineered Bioreactor Marine sediment inoculum Continuous culture Unclassified Continuous culture Bioreactor 54.53754 8.400555 14733635 40549 16 0 37 0 0.0 Metagenome 3300008571 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 763901136 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008571 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 163086704 220519 153 0 254 0 0.0 Metagenome 3300001364 *Microbiome Permanent Draft Kakapo fecal microbial communities from Codfish Island, New Zealand Kakapo fecal microbial communities from Codfish Island, New Zealand - Kakapo Adult1 New Zealand Genomics Limited 3300001364 Metagenome Analysis released per JGI data release policy No Yes dwai012@aucklanduni.ac.nz, d.waite1986@gmail.com David Waite No Host-associated Birds Large intestine Digestive system Fecal Kakapo fecal -46.77 167.63 297742666 1308920 2912 17 5578 37 0.0 Metagenome 3300070432 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Moab, Utah, USA - MOAB_045-M-20160725-COMP-DNA1 3300070432 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 5441125 17851 26 1 59 1 0.0 Metagenome 3300002147 *Microbiome Permanent Draft Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran, Adriatic Sea Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge mesohyl, lysed by freeze-thaw cycling DOE Joint Genome Institute (JGI) 3300002147 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes ute.hentschel@uni-wuerzburg.de Ute Hentschel Humeida No Host-associated Porifera Unclassified Sponge Unclassified Host-associated 45.5099 13.56 217661949 418527 163 4 240 5 SRX4919574 Unrestricted 0.0 Metagenome 3300013966 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Human oral microbial communities from various locations - University of British Columbia - SCG38 University of British Columbia 3300013966 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Unclassified Human oral 342242 964 5 0 2 0 SRX143147 0.0 Metagenome 3300001023 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN611 DOE Joint Genome Institute (JGI) 3300001023 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 99862 342 19 0 19 0 SRX1986991 Unrestricted 0.0 Metagenome 3300020280 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX556044-ERR599114) CEA Genoscope 3300020280 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -8.895 -142.6228 291733178 732032 198 10 313 19 0.0 Metagenome 3300006846 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 DOE Joint Genome Institute (JGI) 3300006846 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Host-associated Plants Rhizosphere Roots Soil Populus rhizosphere 35.8443 -83.9607 4342727936 12392880 2186 69 3687 141 SRX2843500 Unrestricted 0.0 Metagenome 3300051389 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - HDCcR2D-14 DOE Joint Genome Institute (JGI) 3300051389 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 1204521829 2201482 1017 92 1648 151 Unrestricted 23.64 Metagenome 3300036832 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Eucalyptus forests in New South Wales, Australia - Eu_1 DOE Joint Genome Institute (JGI) 3300036832 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Tropical forest Soil Bulk soil soil -33.6 150.0 2097145344 3498540 429 11 697 17 SRX8386861 Unrestricted 14.42 Metagenome 3300009785 *Microbiome Permanent Draft Marine microbial communities from western Arctic Ocean Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 DOE Joint Genome Institute (JGI) 3300009785 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh Yes 30271971 Environmental Aquatic Oceanic Marine Unclassified Marine 77.0991 -150.2252 1545238145 3053379 739 425 1242 599 SRX2997471 Unrestricted 0.0 Metagenome 3300049749 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB35 DOE Joint Genome Institute (JGI) 3300049749 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 337978339 833691 490 10 950 12 Unrestricted 8.53 Metagenome 3300041512 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG AgResearch, New Zealand, Mosgeil 3300041512 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Unclassified Roots Unclassified White clover root -43.648506 172.343549 2540321971 5304450 351 58 1135 153 0.0 Metagenome 3300047527 *Microbiome Permanent Draft Floating fern leaf microbial communities from various locations Floating fern leaf microbial communities from Dublin, Ireland - 1530_IRRI DOE Joint Genome Institute (JGI) 3300047527 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dave.armitage@gmail.com David Armitage No Host-associated Plants Phylloplane/Leaf Phyllosphere Endophytes Leaf 53.3673 -6.3415 42823174 71609 9 13 14 10 Unrestricted 545.29 Metagenome 3300012442 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100233 University of Pennsylvania 3300012442 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 6836442 19592 18 1 18 3 SRX756668 0.0 Metagenome 3300012904 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1 DOE Joint Genome Institute (JGI) 3300012904 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 697714472 1757887 650 48 1327 79 SRX3296756 Unrestricted 3.85 Metagenome 3300025873 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025873 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 18.92 -104.89 565147528 1518015 9 0 7 0 Unrestricted 0.0 Metagenome 3300055142 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_28-s55 day 245 DOE Joint Genome Institute (JGI) 3300055142 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1447371772 2083408 243 132 327 174 Unrestricted 36.88 Metagenome 3300051367 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - ATCR2C-14 DOE Joint Genome Institute (JGI) 3300051367 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 104366139 150893 94 3 134 6 Unrestricted 284.07 Metagenome 3300038984 *Microbiome Permanent Draft Bacterial communities from sewage treatment works near Birtley, UK Sludge bacterial communities from sewage treatment works near Birtley, UK - 43A 4M Northumbria University 3300038984 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes martin.spurr@newcastle.ac.uk Martin Spurr No Engineered Bioreactor Sludge Wastewater Unclassified wastewater 54.903212 -1.595078 5923047 12949 22 0 32 0 0.0 Metagenome 3300024952 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 38_LOW7 (SPAdes) DOE Joint Genome Institute (JGI) 3300024952 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 82766884 138268 39 0 48 0 SRX2720522 Unrestricted 0.0 Metagenome 3300037501 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from California, United States - Mound Spring (MOS_S1) DOE Joint Genome Institute (JGI) 3300037501 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Warm (34-42C) Thermal springs Unclassified Desert spring 37.0233 -117.3845 6.89 1050891657 1435530 440 4 675 6 SRX9166659 Unrestricted 14.3 Metagenome 3300040746 *Microbiome Permanent Draft Microbial community composition of arsenic contaminated rice paddy soil collected from severe arsenic contaminated areas of West Bengal, India Contaminated soil microbial communities from rice paddy field in Bethuadahari, West Bengal, India - S4 CeGaT 3300040746 Metagenome Analysis MEGAHIT v. 1.2.9 released by JGI data releasing policy No Yes himaash2007@gmail.com HIMADRI BOSE No Environmental Terrestrial Paddy field/soil Soil Contaminated contaminated soil 23.40218 88.24646 7-8 249659091 513776 326 2 639 8 0.0 Metagenome 3300037399 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10ST15 DOE Joint Genome Institute (JGI) 3300037399 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 650826283 1737300 892 61 1576 116 SRX9140870 Unrestricted 5.79 Metagenome 3300048820 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 S1 10-14 DOE Joint Genome Institute (JGI) 3300048820 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3532 19.0474 547951952 741802 142 7 170 10 Restricted 22.03 Metagenome 3300042118 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913F_E14_082316_2156 DOE Joint Genome Institute (JGI) 3300042118 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.1836 -97.9974 162090332 477449 293 11 539 19 Unrestricted 6.79 Metagenome 3300044812 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_33BS DOE Joint Genome Institute (JGI) 3300044812 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4391 -106.0507 997168787 1644555 355 36 571 51 SRX20649524 Unrestricted 15.32 Metagenome 7000000373 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159490532 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000373 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 88398627 133398 0 0 0 0 0.0 Metagenome 3300042165 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Seawater microbial communities from Algarve, Portugal - SW03 v2 Molecular Research LP (MR DNA) 3300042165 Metagenome Analysis Metawrap workflow v. 1.0.8 released by JGI data releasing policy Yes Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Environmental Aquatic Oceanic Marine Unclassified seawater 36.979778 -7.989111 33957420 48120 10 4 15 3 0.0 Metagenome 3300026549 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_01 DOE Joint Genome Institute (JGI) 3300026549 Metagenome Analysis spades v. 3.11.1 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen 49.6935 -112.8418 1135002002 1682150 1310 4 1714 12 SRX4804158 Unrestricted 58.76 Metagenome 3300035684 *Microbiome Permanent Draft Biological soil crust microbial communities from Mojave Desert, California, United States Biological soil crust microbial communities from Mojave Desert, California, United States - CLC_S3 DOE Joint Genome Institute (JGI) 3300035684 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erik@olemiss.edu Erik Hom No Environmental Terrestrial Soil crust Soil Biological soil crust 34.1758 -115.3866 1959164204 4134494 1582 66 2584 99 SRX8380273 Unrestricted 10.86 Metagenome 3300000191 *Microbiome Permanent Draft Delisea pulchra's surface microbial communities from Botany Bay, Sydney, Australia Delisea pulchra's surface microbial communities from Botany Bay, Sydney, Australia - BBAY61_SOAP_k21_Abyss_k55_GAA J. Craig Venter Institute 3300000191 Metagenome Analysis Assembled with SOAPdenovo and Abyss separately and then joined with GAA released per JGI data release policy No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Red algae Unclassified Delisea pulchra's surface -33.991017 151.232433 12576085 33880 0 0 0 0 0.0 Metagenome 3300006003 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_2-Sept-14 DOE Joint Genome Institute (JGI) 3300006003 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 98989268 334970 282 73 508 146 SRX2838885 Unrestricted 0.0 Metagenome 7000000638 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human attached/keratinized gingiva microbial communities from NIH, USA - visit 2, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000638 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Attached/Keratinized gingiva Human 41927138 79566 0 0 0 0 0.0 Metagenome 3300006795 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B DOE Joint Genome Institute (JGI) 3300006795 Metagenome Analysis MEGAHIT v. 0.1.3 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.299 -156.61 688576954 1338111 404 4 720 4 SRX2899914 Unrestricted 0.0 Metagenome 3300026616 *Microbiome Permanent Draft Marine Fish Microbial Metagenomes Catshark gut microbial communities from Southern California Bight, Pacific ocean - XAB1A University of California, San Diego, Scripps Institute of Oceanography 3300026616 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton No Host-associated Fish Intestine Digestive system Unclassified fish gut 32.50699 -117.28929 18154307 22734 7 6 3 7 0.0 Metagenome 3300011435 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT660_2 DOE Joint Genome Institute (JGI) 3300011435 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8893 -106.9078 442286394 1024613 436 70 881 118 SRX3539184 Unrestricted 0.0 Metagenome 7000000154 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 764042746 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000154 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2601385 3461 0 0 0 0 0.0 Metagenome 3300029372 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 081_5_2_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029372 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 171585035 221568 183 0 271 0 0.0 Metagenome 3300004816 *Microbiome Permanent Draft Salt marsh microbial communities from Little Sippewissett, Woods Hole, MA that are anoxygenic and photosynthetic Marine anoxygenic phototrophic community R3 sample Marine Biological Laboratory 3300004816 Metagenome Analysis CLC released per JGI data release policy No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Intertidal zone Marine Salt marsh marine 41.5758508 -70.635807 14578935 20909 6 0 13 0 0.0 Metagenome 3300029994 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_4 DOE Joint Genome Institute (JGI) 3300029994 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 686585930 1251807 181 15 292 19 SRX5357442 Unrestricted 10.56 Metagenome 3300015308 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_20JUN2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015308 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 166838124 300368 6 24 7 48 SRX3923146 Unrestricted 10.26 Metagenome 3300010369 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 3) (version 3) DOE Joint Genome Institute (JGI) 3300010369 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 5.0626 -53.0462 2063494974 2924159 1114 147 1964 272 SRX2525399, SRX2525398 Unrestricted 0.0 Metagenome 3300034170 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_03D_16 DOE Joint Genome Institute (JGI) 3300034170 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9141 -147.8344 732689946 1849005 620 21 1086 31 SRX7633791 Unrestricted 7.63 Metagenome 3300028832 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_01 DOE Joint Genome Institute (JGI) 3300028832 Metagenome Analysis spades v. 3.11.1 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -19.6574 146.8351 3318270658 6814247 3960 44 5957 60 SRX5345260, SRX7705999 Unrestricted 0.0 Metagenome 3300041959 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS906_Marker113_DNA SE_2020 Marine Biological Laboratory 3300041959 Metagenome Analysis IDBA_UD v. 1.1.3 released by JGI data releasing policy No Yes cfortunato@gmail.com; randerson@carleton.edu; elks@mit.edu Caroline Fortunato; Rika Anderson; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.92274 -129.988104 223476790 438339 328 17 602 29 0.0 Metagenome 3300000742 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 05AUG2008 epilimnion DOE Joint Genome Institute (JGI) 3300000742 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300000360 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM205 Beijing Genomics Institute (BGI), Macrogen 3300000360 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 155322416 351410 694 2 1096 1 0.0 Metagenome 3300039225 *Microbiome Draft Lab enrichment of oil microbial communities from petroleum reservoir, Saquarema, RJ, Brazil Lab enrichment of oil microbial communities from petroleum reservoir, Saquarema, RJ, Brazil - Saqua3 Federal University of Rio Grande do Norte 3300039225 Metagenome Analysis Spades v. 3.10.1 released by JGI data releasing policy No Yes lfagnez@ufrnet.br Lucymara Agnez-Lima No Environmental Terrestrial Unclassified Oil reservoir Unclassified oil reservoir -22.9258 -42.5076 4453342 5064 3 0 5 0 0.0 Metagenome 3300030736 *Microbiome Permanent Draft Wheat crown rot disease influences the structure and diversity of wheat-associated microbiome Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 6 University of Western Sydney 3300030736 Metagenome Analysis MEGAHIT v. 1.0 released by JGI data releasing policy No Yes h.liu2@westernsydney.edu.au hongwei liu No Host-associated Plants Rhizosphere Roots Soil rhizosphere soils -27.565194 151.864444 104832712 246745 178 18 358 36 0.0 Metagenome 3300047363 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_160330.NP1 DOE Joint Genome Institute (JGI) 3300047363 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 861859566 1840798 590 76 920 125 Unrestricted 13.05 Metagenome 3300001516 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from Tahi Moana, Pacific Ocean, of black smokers Hydrothermal vent plume microbial communities from Tahi Moana, Pacific Ocean, of black smokers 3300001516 Metagenome Analysis MetaVelvet 1.2.02 released by JGI data releasing policy No Yes akarthik@umich.edu Karthik Anantharaman No Environmental Aquatic Hydrothermal vents Marine Black smokers Hydrothermal vent plume -20.064428 -176.171974 178791248 300470 27 5 89 5 0.0 Metagenome 3300026984 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF048 (SPAdes) DOE Joint Genome Institute (JGI) 3300026984 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 82558844 238416 75 5 142 6 SRX2014386 Unrestricted 0.0 Metagenome 3300031162 *Microbiome Finished The meta-genome of marine becteria from oil-drilling area Marine microbial communities around an oil-drilling rig in Bohai Gulf, China - 0 Hebei Provincial Institute 3300031162 Metagenome Analysis soap v. 2.21 released by Si Li No Yes jackeikee@aliyun.com Si Li No Environmental Aquatic Oil seeps Marine Unclassified seawater 38.26 118.24 10 708128296 1764242 563 225 879 412 0.0 Metagenome 3300001649 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF038 DOE Joint Genome Institute (JGI) 3300001649 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 4882491 15488 27 4 62 6 SRX2014394 Unrestricted 0.0 Metagenome 3300024519 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_27 DOE Joint Genome Institute (JGI) 3300024519 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Strait Marine Unclassified seawater 49.2166667 -123.5333333 1281503828 3177011 767 43 1292 72 SRX4480240 Unrestricted 10.09 Metagenome 3300065589 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 786 in Hanna, Alberta, Canada - S00JY_0252 Microbiome Insights 3300065589 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.31527169 -112.0508909 385716549 548295 113 4 162 5 0.0 Metagenome 3300057205 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Michigan, United States - E2019-0039 DOE Joint Genome Institute (JGI) 3300057205 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.96916667 -83.37611111 151688374 347036 146 30 237 40 Unrestricted 45.54 Metagenome 3300019366 *Microbiome Permanent Draft Mouse fecal microbial communities from Athens, Georgia, USA Mouse fecal microbial communities from Athens, Georgia, USA - 8J1E Georgia Genomics Facility 3300019366 Metagenome Analysis megahit released by JGI data releasing policy No Yes ptu@live.unc.edu Pengcheng Tu No Host-associated Mammals Large intestine Digestive system Fecal mouse fecal 33.9519 -83.3576 40417330 52152 76 0 81 2 0.0 Metagenome 3300038549 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Sediment microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_South_2 DOE Joint Genome Institute (JGI) 3300038549 Metagenome Analysis metaspades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Wetlands Marine Sediment sediment 26.3584 -80.2982 1139719206 1989303 622 15 1187 27 SRX9405192 Unrestricted 13.92 Metagenome 3300040277 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik, Tundra, AK, USA - TOOL_043-M-20170719-COMP-DNA1 Battelle Memorial Institute 3300040277 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 68.66109 -149.37047 7100595 19420 19 0 31 1 0.0 Metagenome 3300038471 *Microbiome Permanent Draft Acid mine drainage microbial communities from coal mines in Pennsylvania and Ohio, United States Lab enriched acid mine drainage microbial communities from Akron, Ohio, USA - WFPL1_0D DOE Joint Genome Institute (JGI) 3300038471 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shagun2260@gmail.com Shagun sharma No Engineered Wastewater Mine water Industrial wastewater Acid mine drainage acid mine drainage 41.0775 -81.5114 1334001539 3810603 1199 37 2178 49 SRX9404293 Unrestricted 7.2 Metagenome 3300010387 *Microbiome Permanent Draft Acid mine drainage microbial communities from Malanjkhand copper mine, India Acid mine drainage microbial communities from Malanjkhand copper mine, India - M8 k-mer 51 Xcelris labs Ltd 3300010387 Metagenome Analysis Metavelvet released per JGI data release policy No Yes psar@hijli.iitkgp.ernet.in Pinaki Sar No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage sediment 21.9985 80.697983 289793165 718824 363 54 567 103 0.0 Metagenome 3300024358 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepA_8d DOE Joint Genome Institute (JGI) 3300024358 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 175927750 398329 221 8 341 14 SRX4547355 Unrestricted 11.02 Metagenome 3300038616 *Microbiome Permanent Draft Seawater microbial communities from the Baltic Proper 10 km east of Oland, Sweden Seawater microbial communities from the Baltic Proper 10 km east of Oland, Sweden - LMO_121004 Royal Institute of Technology 3300038616 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 26667648 Environmental Aquatic Unclassified Marine Unclassified Seawater 56.93085 17.060667 16911542 44910 45 6 90 13 SRX1050762 0.0 Metagenome 3300011640 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00329 Weill Cornell Medical College 3300011640 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.71 -74.0 31275931 44014 11 0 18 0 SRX822302 0.0 Metagenome 3300000584 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Coal bed microbial communities from San Jean Basin, New Mexico, USA - CG13 McGill University 3300000584 Metagenome Analysis No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 37.0 -108.0 7.88 2155597 3734 1 0 1 0 0.0 Metagenome 3300070546 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_002-M-20180620-COMP-DNA1 Battelle Memorial Institute 3300070546 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 32.922166 -87.428895 5.66-5.98 8441006 26741 58 5 97 8 0.0 Metagenome 3300026680 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN609 (SPAdes) DOE Joint Genome Institute (JGI) 3300026680 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 9497626 27910 41 3 64 6 SRX1986977 Unrestricted 0.0 Metagenome 3300049062 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - A25_A_BS (version 2) DOE Joint Genome Institute (JGI) 3300049062 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 161585256 369689 340 11 736 16 Unrestricted 0.0 Metagenome 3300002263 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP13-MA 3300002263 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300031825 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - MeOH1_35cm_T4_195 DOE Joint Genome Institute (JGI) 3300031825 Metagenome Analysis spades v. 3.12.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sandy soil 49.2598372 -123.2459363 720309542 1114032 440 31 601 45 SRX5785770 Unrestricted 52.14 Metagenome 3300001107 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_O2 DOE Joint Genome Institute (JGI) 3300001107 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 3675266 11826 136 45 215 81 SRX3311914 Unrestricted 0.0 Metagenome 3300070619 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_001-O-20200719-COMP-DNA1 3300070619 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 84536 296 1 1 3 2 0.0 Metagenome 3300005700 *Microbiome Permanent Draft Freshwater microbial communities from Lake Kinneret, Israel Aquatic microbial communities from Lake Kinneret, Israel - sample 1 Macrogen 3300005700 Metagenome Analysis Unkonwn No Yes beja@tx.technion.ac.il Beja O, Oded Beja No Environmental Aquatic Lentic Freshwater Unclassified Freshwater 32.8244 35.588 40450 37 0 0 0 0 0.0 Metagenome 3300003658 *Microbiome Permanent Draft Hypersaline viral and bacterial communities from Bras del Port, Santa Pola, Spain Hypersaline viral and bacterial communities from Bras del Port, Santa Pola, Spain - HQ1totalprecorrection Lifesequencing S.L. 3300003658 Metagenome Analysis released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline samples 2979539 9688 7 0 0 0 0.0 Metagenome 3300055508 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.3C.10 SIP fraction DOE Joint Genome Institute (JGI) 3300055508 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 235906477 440316 233 14 353 24 Unrestricted 12.76 Metagenome 3300003346 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNA DOE Joint Genome Institute (JGI) 3300003346 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 237986934 491330 294 145 534 249 SRX2569217 Unrestricted 0.0 Metagenome 3300029219 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011712-136 Beijing Genomics Institute (BGI) 3300029219 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 133008612 191621 119 3 191 1 0.0 Metagenome 3300027185 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.689 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027185 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 69881219 158446 102 22 157 43 SRX2753566 Unrestricted 0.0 Metagenome 3300011944 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00223 Weill Cornell Medical College 3300011944 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.87 -73.91 25192336 38917 13 0 20 0 SRX822202 0.0 Metagenome 3300050355 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - YNP_Soil_2 DOE Joint Genome Institute (JGI) 3300050355 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Adjacent soil Adjacent soil 44.7986 -110.7207 574588311 880964 154 55 178 87 Unrestricted 138.5 Metagenome 3300011402 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT830_2 DOE Joint Genome Institute (JGI) 3300011402 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9228 -106.952 188221445 429926 236 30 478 52 SRX3369046 Unrestricted 0.0 Metagenome 3300029884 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35703 Beijing Genomics Institute (BGI) 3300029884 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 163290603 203361 136 0 173 0 0.0 Metagenome 3300025271 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025271 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 180798330 479312 210 4 425 7 SRX1989934 Unrestricted 0.0 Metagenome 3300012536 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100212 University of Pennsylvania 3300012536 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 1669787 4891 12 0 12 0 SRX756687 0.0 Metagenome 3300016422 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 DOE Joint Genome Institute (JGI) 3300016422 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Unclassified Soil 18.321 -65.8172 3249212201 7077954 1196 15 2128 31 SRX3604231, SRX5634846 Unrestricted 0.0 Metagenome 3300043068 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - HLP_050217 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043068 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.896 -89.3636 3353438 10051 35 1 67 1 SRX9381728 Unrestricted 35.63 Metagenome 3300050587 *Microbiome Permanent Draft Lab-enriched moose rumen microbial communities from Nabakwasi Lake, Ontario, Canada American moose rumen microbial community from Toronto, Canada - MR-C msp University of Toronto 3300050587 Metagenome Analysis Spades v. 3.14.1 Yes Yes camillaln@gmail.com Camilla Nesb? No Host-associated Mammals Stomach Digestive system Rumen American moose rumen 43.66 -79.4 297351322 469196 103 2 243 0 SRX13466129 0.0 Metagenome 3300070405 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_004-M-20190715-COMP-DNA1 3300070405 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 4931714 16081 26 3 56 8 0.0 Metagenome 3300001756 *Microbiome Permanent Draft Wastewater microbial communities from Belvaux, Luxembourg Wastewater microbial communities from Belvaux, Luxembourg - M20 3300001756 Metagenome Analysis CLC genomics Workbench released by JGI data releasing policy Yes Yes goux@lippmann.lu, xavier.goux@list.lu Xavier Goux No Engineered Bioreactor Sludge Anaerobic Unclassified Wastewater 49.506095 5.943536 17467348 19387 8 0 8 0 0.0 Metagenome 3300020216 *Microbiome Permanent Draft Processed tobacco microbial communities from Domestic Moist Snuff USA Processed tobacco microbial communities from USA domestic moist snuff from retail store in Atlanta, GA, USA - Moist Snuff M1 Second Assembly SPADES Meta Centers for Disease Control and Prevention (CDC), USA 3300020216 Metagenome Analysis SPADES Meta 3.10.0 released by Tyx Yes Yes wyu3@cdc.gov Robert E. Tyx No Engineered Food production Unclassified Unclassified Unclassified Processed Tobacco 33.881 -84.294 26331995 26350 22 1 27 1 0.0 Metagenome 3300022830 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - IR.F.S.T-25 DOE Joint Genome Institute (JGI) 3300022830 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 123641472 271023 136 4 240 10 SRX4415252, SRX7705505 Unrestricted 0.0 Metagenome 3300009652 *Microbiome Permanent Draft Anaerobic biogas reactor microbial communites from Washington, USA Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2_A C13 SIP DNA DOE Joint Genome Institute (JGI) 3300009652 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes dacb@uw.edu David Beck Yes 28895946 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic biogas reactor 47.6525 -122.3049 621860275 1019236 547 0 852 3 SRX2339136 Unrestricted 0.0 Metagenome 3300051104 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Leeds, Wisconsin, USA - 122_767_WI_DR_0cm_c2_T0_16O DOE Joint Genome Institute (JGI) 3300051104 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 43.30485 -89.3309 774837880 1381612 353 3 650 8 Restricted 14.05 Metagenome 3300002826 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A5-10 DOE Joint Genome Institute (JGI) 3300002826 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 116030 388 21 1 36 0 SRX1991125 Unrestricted 0.0 Metagenome 3300027073 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF010 (SPAdes) DOE Joint Genome Institute (JGI) 3300027073 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 95771758 259303 66 2 124 4 SRX2014335 Unrestricted 0.0 Metagenome 3300029690 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37352 Beijing Genomics Institute (BGI) 3300029690 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 180651171 216971 133 0 190 0 0.0 Metagenome 3300013921 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -PQiagenBeadWash928-8 Weill Cornell Medical College 3300013921 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.96 20949840 27477 14 0 19 0 SRX823472 0.0 Metagenome 3300070290 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Florida, USA - DSNY_042-M-20180820-COMP-DNA1 3300070290 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 24983618 79391 104 6 184 12 0.0 Metagenome 3300036805 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in California, United States - CAM_3 DOE Joint Genome Institute (JGI) 3300036805 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil 36.5 -121.8 2463598505 3795319 551 110 833 132 SRX8386193 Unrestricted 16.19 Metagenome 3300026894 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgLPA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026894 Metagenome Analysis spades v. 3.11.1 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 52632197 162398 137 2 269 9 SRX2521043 Unrestricted 0.0 Metagenome 3300006127 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE24Aug09 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006127 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 317049821 839614 215 93 314 140 SRX2565125 Unrestricted 0.0 Metagenome 3300037090 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-3-X0 DOE Joint Genome Institute (JGI) 3300037090 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0467 486469135 882718 327 2 506 5 SRX8138060 Unrestricted 8.95 Metagenome 3300013201 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100351 University of Pennsylvania 3300013201 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12476158 24976 16 2 13 5 SRX756306 0.0 Metagenome 3300043015 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Estuary water microbial communities from Narragansett Bay, Rhode Island, USA - E1_negO2CPB DOE Joint Genome Institute (JGI) 3300043015 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.9078 -71.5683 697123629 1081129 311 16 428 22 Unrestricted 0.0 Metagenome 3300014792 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS63_24 University of Hohenheim 3300014792 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 133304745 202820 88 2 148 6 0.0 Metagenome 2199352031 *Microbiome Permanent Draft Speleothem and rock wall surfaces microbial communities from Kartchner Caverns, Benson, Arizona, USA Cave microbial community (Speleothem B) Arizona Genomics Institute 2199352031 Metagenome Analysis Newbler released per JGI data release policy No Yes moo@email.arizona.edu Marian Ortiz No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Speleothem and rock wall surfaces 31.837801 -110.350292 181900666 529910 136 0 313 0 0.0 Metagenome 3300049323 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 263-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300049323 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.980202 -107.04028 251740047 692144 416 23 815 41 Unrestricted 9.3 Metagenome 3300027339 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Yuk_RepA_8d DOE Joint Genome Institute (JGI) 3300027339 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 220159803 454498 196 13 265 34 SRX5245439 Unrestricted 15.28 Metagenome 7000000330 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159591683 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000330 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 19409996 37128 0 0 0 0 0.0 Metagenome 3300039117 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from Daisy Lake, Ontario, Canada Freshwater lake sediment microbial communities from Daisy Lake, Ontario, Canada - C1 University of Cambridge 3300039117 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 46.27199 -80.52479 2316440 7493 23 7 38 4 0.0 Metagenome 3300005263 *Microbiome Permanent Draft Freshwater pond sediment microbial communities from Middleton WI, enriched by Humic Acid and/or Glucose under anaerobic conditions Freshwater pond sediment microbial communities from Middleton WI, enriched with Humic Acid Only under anaerobic conditions - HA Sample 3 University of Wisconsin, Madison 3300005263 Metagenome Analysis CLC Genomic Workbench released per JGI data release policy Yes Yes nstern2@wisc.edu Noah Stern No Environmental Aquatic Sediment Freshwater Unclassified Anaerobic Enrichment Culture 43.0603 -89.5717 340646692 686891 271 3 444 0 0.0 Metagenome 3300000582 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 28MAY2007 hypolimnion v1 (version 2) DOE Joint Genome Institute (JGI) 3300000582 Metagenome Analysis released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 2140779 2359 0 0 0 0 Unrestricted 0.0 Metagenome 3300025529 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-4-D (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025529 Metagenome Analysis spades v. 3.11.1 Yes Yes jsvander@ucdavis.edu Jean VanderGheynst Yes 27981239 Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 161245640 218633 224 11 217 20 SRX2557143 Unrestricted 0.0 Metagenome 3300043136 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8CB15 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043136 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 38530502 104224 120 5 182 6 SRX8379536 Unrestricted 11.54 Metagenome 3300002700 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Biofilm from sections of failed pipe - PAS_821 McGill University 3300002700 Metagenome Analysis released per JGI data release policy No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey No Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 55.07 -110.53 273059129 582800 262 6 440 6 0.0 Metagenome 3300049064 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - C17_B_BS (version 2) DOE Joint Genome Institute (JGI) 3300049064 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 158594089 346441 338 11 713 12 Unrestricted 0.0 Metagenome 3300043669 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 409-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043669 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9749 -107.0655 649426977 1711961 579 23 999 33 Unrestricted 7.54 Metagenome 3300038767 *Microbiome Permanent Draft Beach sand microbial communities from Municipal Pensacola Beach, Florida Beach sand microbial communities from Municipal Pensacola Beach, Florida - OS-S1 Georgia Institute of Technology 3300038767 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Sand Soil Unclassified Beach sand 30.3262 -87.1745 16312926 41528 36 1 67 1 SRX692936 0.0 Metagenome 3300011942 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00508 Weill Cornell Medical College 3300011942 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.88 -73.86 26265138 38437 18 0 38 0 SRX822477 0.0 Metagenome 3300028327 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Nasutitermes corniger P3 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300028327 Metagenome Analysis spades v. 3.11.1 Yes Yes brune@mpi-marburg.mpg.de Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 26.0625 -80.2332 1301161126 2363896 762 5 1143 5 SRX2553513, SRX2553514 Unrestricted 0.0 Metagenome 3300011404 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ035 MetaG DOE Joint Genome Institute (JGI) 3300011404 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.7458 -74.7615 211017477 457540 243 26 433 49 SRX3539472 Unrestricted 0.0 Metagenome 3300047651 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BT04-03_D100 (version 2) DOE Joint Genome Institute (JGI) 3300047651 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3555 19.0492 221740017 334946 137 40 177 48 Restricted 0.0 Metagenome 3300009654 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR3_MetaG DOE Joint Genome Institute (JGI) 3300009654 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 36.29 139.38 583389595 1061881 604 0 953 1 SRX2157910 Unrestricted 0.0 Metagenome 3300038789 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-1_at_6-7_cm Genome Quebec 3300038789 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89934 -73.72822 655391535 1693836 780 15 1596 24 0.0 Metagenome 3300014070 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01086 Weill Cornell Medical College 3300014070 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.66 -73.95 32425988 45096 17 0 21 0 SRX823041 0.0 Metagenome 3300051102 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Warrenville, Illinois, USA - 73_697_IL_DR_0cm_c1_T0_16O DOE Joint Genome Institute (JGI) 3300051102 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 41.84145 -88.2298 543644389 967197 223 8 414 10 Restricted 14.82 Metagenome 3300037218 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 P-1-M DOE Joint Genome Institute (JGI) 3300037218 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0473 1082503703 2156398 432 27 728 43 SRX8146975 Unrestricted 8.2 Metagenome 3300025830 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025830 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 470614127 919481 285 51 431 87 SRX2999667 Unrestricted 0.0 Metagenome 3300005826 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.186_BBA Oregon Health and Science University (OHSU) 3300005826 Metagenome Analysis unassembled released per JGI data release policy No Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Unclassified Sediment Unclassified sediment (intertidal) 46.31286 -123.99663 671043486 1239361 400 82 769 132 0.0 Metagenome 3300070945 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_005-M-20180711-COMP-DNA1 3300070945 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 21616769 66685 53 3 96 7 0.0 Metagenome 3300036563 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C4-5C DOE Joint Genome Institute (JGI) 3300036563 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 82518709 269720 192 7 343 11 SRX8786844 Unrestricted 4.33 Metagenome 3300061224 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Santa Rita Experimental Range, Tucson, Arizona, USA - SRER_053-M-20210810-comp-1 DOE Joint Genome Institute (JGI) 3300061224 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Desert Soil Unclassified Terrestrial soil 31.909824 -110.835912 2244598773 4019754 726 7 1257 15 Unrestricted 19.79 Metagenome 3300007941 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 550534656 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007941 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 3202167 4863 2 0 7 0 0.0 Metagenome 3300056676 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - APS1_1C_TP2_16O DOE Joint Genome Institute (JGI) 3300056676 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 1253919837 1753297 437 31 573 61 Unrestricted 32.75 Metagenome 3300004079 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleC_D2 DOE Joint Genome Institute (JGI) 3300004079 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.107521 -121.649681 1076930654 3691855 1177 63 2607 108 SRX7146203 Unrestricted 0.0 Metagenome 3300044696 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - Rondonia_Forest_2_C100m DOE Joint Genome Institute (JGI) 3300044696 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.134 -62.889 1334887275 3459169 407 7 906 20 Unrestricted 9.3 Metagenome 3300069337 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Taiga, AK, USA - HEAL_010-O-20170724-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069337 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.87569 -149.21334 16632785 52501 60 1 107 4 0.0 Metagenome 3300007753 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159591683 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007753 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 78653717 115554 70 0 101 0 0.0 Metagenome 3300014794 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS50_6 University of Hohenheim 3300014794 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 129911592 207310 93 0 141 0 0.0 Metagenome 3300026892 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_12-Aug-14 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026892 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 52550651 155752 127 53 222 90 SRX2838887 Unrestricted 0.0 Metagenome 3300043408 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from White Clay Creek, Avondale, Pennsylvania, USA - whiteclaycreek1_2019_sw_WHONDRS-S19S_0037 DOE Joint Genome Institute (JGI) 3300043408 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 39.8579 -75.7831 347659012 580450 428 137 689 212 Unrestricted 18.21 Metagenome 3300043687 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - Rondonia_Pasture_1_A100m DOE Joint Genome Institute (JGI) 3300043687 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.163 -62.836 605452870 1769382 597 17 1202 20 Unrestricted 7.51 Metagenome 3300037265 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_C2 DOE Joint Genome Institute (JGI) 3300037265 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 783303658 1882928 441 57 781 86 SRX8397090 Unrestricted 6.33 Metagenome 3300021076 *Microbiome Permanent Draft Peat bog microbial communities from Stordalen Mire, Abisko, Sweden Peat bog microbial communities from Stordalen Mire, Abisko, Sweden - Day 50 Australian Centre for Ecogenomics 3300021076 Metagenome Analysis metaSPAdes released by JGI data releasing policy No Yes crossen.14@buckeyemail.osu.edu Kelsey Crossen No Environmental Terrestrial Peat Soil Bog peat bog 68.3531685 19.0467201 1349034830 2986092 572 56 930 99 0.0 Metagenome 3300029374 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 080_4_27_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029374 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 209246216 279520 219 0 293 0 0.0 Metagenome 3300029992 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_3 DOE Joint Genome Institute (JGI) 3300029992 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 917609464 1629425 270 13 398 29 SRX5356901 Unrestricted 11.37 Metagenome 3300001048 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN117 DOE Joint Genome Institute (JGI) 3300001048 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 39.23550963 -121.2836963 29850 92 11 0 16 0 SRX1986448 Unrestricted 0.0 Metagenome 3300035515 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - Beaver5Cecum1 DOE Joint Genome Institute (JGI) 3300035515 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.18 -122.54 805084185 1584149 990 29 1590 48 SRX8346442 Unrestricted 9.72 Metagenome 3300060456 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210618_22_01 DOE Joint Genome Institute (JGI) 3300060456 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 464810948 666086 213 77 253 101 Unrestricted 42.36 Metagenome 3300009950 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 64 mira Center for Advanced Technologies in Genomics, Sao Paulo University 3300009950 Metagenome Analysis mira released per JGI data release policy No Yes joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 115845660 191034 581 12 790 13 0.0 Metagenome 3300012308 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100589 University of Pennsylvania 3300012308 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 13398946 24034 14 7 20 7 SRX756165 0.0 Metagenome 3300027457 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE17-D (SPAdes) DOE Joint Genome Institute (JGI) 3300027457 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.32 19142665 55302 89 5 176 7 SRX1991452 Unrestricted 0.0 Metagenome 7000000152 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit number 3 of subject 763536994 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000152 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 19485928 39647 0 0 0 0 0.0 Metagenome 3300001915 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 DOE Joint Genome Institute (JGI) 3300001915 Metagenome Analysis Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn rhizosphere 42.3948 -85.3738 220220936 603196 705 63 1171 103 SRX1990934 Unrestricted 0.0 Metagenome 3300070786 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_014-O-20190107-COMP-DNA1 3300070786 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 51328711 160053 110 2 160 5 0.0 Metagenome 3300003105 *Microbiome Finished Fresh water viral communities from Lake Needwood, MD Fresh water viral communities from Lake Needwood, MD J. Craig Venter Institute (JCVI) 3300003105 Metagenome Analysis Made public because these are downloaded from Genbank No Yes ipagani@lbl.gov Spiro,D., Ionna Pagani No Environmental Aquatic Lentic Freshwater Unclassified Fresh water 39.121 -77.129 3617333 13290 38 5 38 14 0.0 Metagenome 3300027738 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027738 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 584674167 1368390 383 52 708 90 SRX2021680, SRX1986250, SRX1986251 Unrestricted 0.0 Metagenome 3300000744 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 03AUG2009 hypolimnion DOE Joint Genome Institute (JGI) 3300000744 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu, tmcmahon@engr.wisc.edu; rrmalmstrom@lbl.gov Katherine McMahon, Katherine McMahon; Rex Malmstrom Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300033827 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 E2 5-9 DOE Joint Genome Institute (JGI) 3300033827 Metagenome Analysis spades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0466 236029703 531881 189 6 372 13 SRX8138423, SRX8138422 Unrestricted 0.0 Metagenome 3300001968 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Lake Gatun, Panama - GS020 J. Craig Venter Institute (JCVI) 3300001968 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine 9.164444 -79.83611 166403274 296358 128 1 198 0 0.0 Metagenome 3300028834 *Microbiome Permanent Draft Axial Seamount Reassemblies Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_Marker33_DNA IDBA_UD reassembly 3300028834 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes cfortunato@gmail.com; randerson@carleton.edu; elks@mit.edu Caroline Fortunato; Rika Anderson; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 184252502 394710 499 22 809 47 0.0 Metagenome 3300061600 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - Jacob81 (version 2) DOE Joint Genome Institute (JGI) 3300061600 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Sand Soil Desert sand -78.0236 163.8347 794403 2814 3 1 7 3 Unrestricted 1473.18 Metagenome 3300030509 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2 DOE Joint Genome Institute (JGI) 3300030509 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 830546601 1863429 343 40 645 62 SRX5355663 Unrestricted 9.16 Metagenome 3300031164 *Microbiome Permanent Draft Soil and ectomycorrhiza microbial communities from Populus trichocarpa stands in riparian zones in the Pacific Northwest, United States Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 16_S DOE Joint Genome Institute (JGI) 3300031164 Metagenome Analysis spades v. 3.12.0 Yes Yes kpeay@stanford.edu Kabir Peay No Environmental Terrestrial Riparian zone Soil Trees stand soil 46.6253 -120.532 772468144 2374614 819 61 1618 112 SRX5650589 Unrestricted 8.98 Metagenome 3300023481 *Microbiome Permanent Draft Marine microbial mats from Loihi Seamount, Hawaii, USA Marine microbial mat from Loihi Seamount, Hawaii, USA - Ku'kulu Base Individual Assembly Western Washington University 3300023481 Metagenome Analysis metaSPAdes v. 3.10.0 Metagenomes associated with bioRxiv doi:10.1101/722066 Yes Yes hfullerton@gmail.com; cmoyer@hydro.biol.wwu.edu; mcallis@uw.edu Heather Fullerton; Craig Moyer; Sean McAllister No Environmental Aquatic Hydrothermal vents Marine Microbial mats Marine 18.903 -155.257 156417102 333962 62 2 122 3 0.0 Metagenome 3300006215 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 158883629 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300006215 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 9422277 10950 7 0 7 1 SRX024553, SRX024554 0.0 Metagenome 3300056818 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - LS01-2021-024 DOE Joint Genome Institute (JGI) 3300056818 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 180775542 187151 84 9 82 10 Unrestricted 57.25 Metagenome 3300026982 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 7 (SPAdes) DOE Joint Genome Institute (JGI) 3300026982 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 91604956 201516 82 5 180 9 SRX1984135 Unrestricted 0.0 Metagenome 7000000281 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764325968 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000281 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 63828318 130514 0 0 0 0 0.0 Metagenome 3300007513 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate b Georgia Genomics Facility 3300007513 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 701476397 874921 246 64 303 90 0.0 Metagenome 3300065656 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 828a in Etizkom, Alberta, Canada - S00JY_0174 Microbiome Insights 3300065656 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.3635388 -111.0815252 31117 53 2 0 1 0 0.0 Metagenome 3300038388 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18A_1b_4_3 mgh University of Alberta 3300038388 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 85013818 107734 45 3 73 2 0.0 Metagenome 3300049640 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MG_260218 DOE Joint Genome Institute (JGI) 3300049640 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 781296960 1240989 901 7 1288 10 Unrestricted 20.79 Metagenome 3300056865 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M1P_0_1 DOE Joint Genome Institute (JGI) 3300056865 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0045281 -81.5645485 1428169292 2300365 684 26 1089 29 Unrestricted 13.26 Metagenome 3300069459 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Taiga, AK, USA - HEAL_045-O-20170725-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069459 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.87569 -149.21334 183108070 457927 107 1 201 3 0.0 Metagenome 3300012222 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100793 University of Pennsylvania 3300012222 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 11156819 22828 17 4 60 7 SRX756061 0.0 Metagenome 3300071057 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_015-O-20190110-COMP-DNA1 3300071057 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 1019137 3551 12 3 32 5 0.0 Metagenome 3300044267 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T40 D DOE Joint Genome Institute (JGI) 3300044267 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7008 -64.2497 462430843 1079926 15 2 26 3 Unrestricted 35.14 Metagenome 3300060604 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210531_04_01 DOE Joint Genome Institute (JGI) 3300060604 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 421184228 673482 212 86 290 130 Unrestricted 32.54 Metagenome 3300001740 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP-114 DOE Joint Genome Institute (JGI) 3300001740 Metagenome Analysis Yes Yes mbsulli@gmail.com, sacinas@icm.csic.es; mbsulli@gmail.com Matthew Sullivan, Silvia G. Acinas; Matthew Sullivan Yes 27654921 Environmental Aquatic Oceanic Marine Unclassified Deep ocean 14.5287 -118.7737 93308186 231531 58 1 92 1 SRX4915163 Unrestricted 0.0 Metagenome 3300005147 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgLMC DOE Joint Genome Institute (JGI) 3300005147 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 175026468 616715 304 16 640 27 SRX2521242 Unrestricted 0.0 Metagenome 3300070434 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_001-O-20200706-COMP-DNA1 3300070434 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 5799880 18729 83 13 162 22 0.0 Metagenome 3300005861 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPADES assembly) (version 2) DOE Joint Genome Institute (JGI) 3300005861 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, binskeep@montana.edu; jim.fredrickson@pnnl.gov Natasha Ivanova, William P. Inskeep; Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hypersaline mat 44.376 -110.69 391079800 623474 202 4 288 4 SRX3316449 Unrestricted 0.0 Metagenome 3300041514 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Bulk soil microbial community from Lincoln, Canterbury, New Zealand - BS17_2 MetaG AgResearch, New Zealand, Mosgeil 3300041514 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Environmental Terrestrial Unclassified Soil Agricultural land Dairy farm pasture soil -43.648506 172.343549 812719218 1715075 214 90 776 124 0.0 Metagenome 3300012444 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100709 University of Pennsylvania 3300012444 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9881973 20591 21 5 37 7 SRX756141 0.0 Metagenome 3300042337 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME10Oct2000-rr0673 DOE Joint Genome Institute (JGI) 3300042337 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 831304641 1288544 324 43 489 57 Unrestricted 23.58 Metagenome 3300012902 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1 DOE Joint Genome Institute (JGI) 3300012902 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Soil Agricultural land soil 43.3 -89.38 680953277 1745502 751 61 1454 113 SRX3297453 Unrestricted 3.97 Metagenome 3300011749 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00473 Weill Cornell Medical College 3300011749 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.81 -73.94 24672338 36556 14 0 23 0 SRX822442 0.0 Metagenome 7000000039 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159369152 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000039 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 85733121 148104 0 0 0 0 0.0 Metagenome 3300027030 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF041 (SPAdes) DOE Joint Genome Institute (JGI) 3300027030 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 105564830 289228 69 4 137 6 SRX2014387 Unrestricted 0.0 Metagenome 3300007026 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T18 (2) (BES), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300007026 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 48400883 81703 66 0 86 0 0.0 Metagenome 3300036834 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in New South Wales, Australia - Pi_9 DOE Joint Genome Institute (JGI) 3300036834 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil -34.5 150.0 1562662657 2597400 361 56 633 87 SRX8386979 Unrestricted 17.9 Metagenome 3300029398 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 009_6_9_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029398 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 132333506 157948 72 0 105 0 0.0 Metagenome 3300022873 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 10-14 DOE Joint Genome Institute (JGI) 3300022873 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3535 19.0472 136747800 316415 121 12 169 19 SRX4415344, SRX8128073 Unrestricted 0.0 Metagenome 3300028011 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE1 DOE Joint Genome Institute (JGI) 3300028011 Metagenome Analysis spades v. 3.11.1 Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 59.9979 10.7895 22795068 64536 109 57 201 88 SRX5271607 Unrestricted 9.7 Metagenome 3300050276 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_32 DOE Joint Genome Institute (JGI) 3300050276 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.492 160.907 579001719 972249 91 39 116 54 SRX18236983 Restricted 18.81 Metagenome 3300057013 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E2P_40_42 DOE Joint Genome Institute (JGI) 3300057013 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9927826 -81.4891309 1487553822 2167041 678 1 1110 0 Unrestricted 14.98 Metagenome 3300013565 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - seawater enrichment SCG59 University of British Columbia 3300013565 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 1829609 4177 2 0 4 0 SRX143168 0.0 Metagenome 3300055144 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_106-s41 day 308 DOE Joint Genome Institute (JGI) 3300055144 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1720327033 2490984 370 209 467 215 Unrestricted 50.4 Metagenome 3300038982 *Microbiome Draft Bras del Port CELL metagenomes September 2016 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - BRAS_EDUARDO CELL September 2016 FISABIO - Public Health 3300038982 Metagenome Analysis MEGAHIT v. 1.0 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline water 38.1912 -0.5947 119210248 151121 38 3 50 2 0.0 Metagenome 3300024954 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 55_HOW8 (SPAdes) DOE Joint Genome Institute (JGI) 3300024954 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 74121394 126111 54 3 55 7 SRX2720606 Unrestricted 0.0 Metagenome 3300006463 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2 of subject 159207311 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006463 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 212850221 293809 243 0 368 1 0.0 Metagenome 3300045118 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_110m_2015 DOE Joint Genome Institute (JGI) 3300045118 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 940298272 1667136 781 4 1313 10 Unrestricted 11.22 Metagenome 3300070550 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_006-M-20190617-COMP-DNA1 Battelle Memorial Institute 3300070550 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 32.898842 -87.446131 5.28-5.37 12812094 41612 57 4 96 4 0.0 Metagenome 3300013359 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01250 Weill Cornell Medical College 3300013359 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.58 -73.97 21266884 29202 15 0 30 0 SRX823205 0.0 Metagenome 3300029153 *Microbiome Permanent Draft Deep subsurface microbial communities from shale gas basins in Pennsylvania, USA Deep subsurface microbial communities from shale gas basins in Pennsylvania, USA - 3_Day13.3 Marine Biological Laboratory 3300029153 Metagenome Analysis released Yes Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Unclassified Deep subsurface Unclassified Deep subsurface 39.898 -79.976 13771055 21007 8 0 9 0 0.0 Metagenome 3300045165 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_7_C DOE Joint Genome Institute (JGI) 3300045165 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 231509263 266385 142 1 170 2 Unrestricted 125.44 Metagenome 3300044814 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_34CD DOE Joint Genome Institute (JGI) 3300044814 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4367 -106.0519 1254588416 2042488 292 39 473 60 SRX20649829 Unrestricted 13.54 Metagenome 3300004245 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 121_LOW14 DOE Joint Genome Institute (JGI) 3300004245 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 41620507 87605 27 0 50 0 SRX2721240 Unrestricted 0.0 Metagenome 3300061536 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from National Grasslands LBJ, Texas, USA - CLBJ_032-M-20210504-comp-1 DOE Joint Genome Institute (JGI) 3300061536 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Grasslands Soil Unclassified Terrestrial soil 33.40613 -97.594 3255498829 5251302 868 36 1398 42 Unrestricted 15.17 Metagenome 3300049435 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_27BD DOE Joint Genome Institute (JGI) 3300049435 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.3761 -106.1002 1103463338 1846473 428 40 746 61 SRX20650052 Unrestricted 0.0 Metagenome 3300034041 *Microbiome Permanent Draft Deception Metagenome Fumarole sediment microbial communities from Whalers Bay, Deception Island, Antarctica - WBB3 The Brazilian National Council for Scientific and Technological Development (CNPq) 3300034041 Metagenome Analysis IDBA-ud v. 1.1.1 released per Amanda Bendia -- GOLD-1013 No Yes amandagbendia@gmail.com Amanda Bendia No Environmental Aquatic Volcanic Marine Unclassified fumarole sediment -63.18 -60.67 56416754 71682 25 0 43 0 0.0 Metagenome 3300035682 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02May2015-rr0144 DOE Joint Genome Institute (JGI) 3300035682 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1454227882 2740998 580 110 787 196 SRX8207596 Unrestricted 11.05 Metagenome 3300003350 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 DOE Joint Genome Institute (JGI) 3300003350 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 51.62 -128.09 109123538 292858 243 60 423 113 SRX2581297 Unrestricted 0.0 Metagenome 3300025383 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025383 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 132856745 269365 69 24 109 39 SRX2565196 Unrestricted 0.0 Metagenome 3300009545 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG DOE Joint Genome Institute (JGI) 3300009545 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 3855048485 7477738 2380 260 3879 487 SRX3203320 Unrestricted 0.0 Metagenome 3300033693 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from gas well in Marcellus Shale, West Virginia, United States - MIP3H_03152017 Ohio State University 3300033693 Metagenome Analysis IDBA-UD v. 1.1.1 No Yes rebdaly@colostate.edu Rebecca Daly No Environmental Terrestrial Fracking water Deep subsurface Unclassified Fracking Water 39.6017 -79.9761 3492303 3855 1 0 0 0 0.0 Metagenome 3300002008 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot5-2 3300002008 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 4702452 27301 87 6 172 15 0.0 Metagenome 3300010400 *Microbiome Permanent Draft Terrestrial soil microbial communities with and without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2 DOE Joint Genome Institute (JGI) 3300010400 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tiedjej@msu.edu James Tiedje No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 42.3938 -85.3708 5077819547 11718665 3021 179 5418 324 SRX3295443 Unrestricted 0.0 Metagenome 3300004692 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jun07 (version 2) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300004692 Metagenome Analysis MEGAHIT v0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 216396669 624407 155 105 272 357 SRX2565226 Unrestricted 0.0 Metagenome 3300049589 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 DOE Joint Genome Institute (JGI) 3300049589 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.407926 -82.180036 1396389711 2301922 579 27 961 33 Unrestricted 15.27 Metagenome 3300011348 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100710 University of Pennsylvania 3300011348 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 15216695 26879 9 5 14 6 SRX756140 0.0 Metagenome 3300011656 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00777 Weill Cornell Medical College 3300011656 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.75 -73.98 25348859 46765 22 0 39 0 SRX822743 0.0 Metagenome 3300009138 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_D2_MG DOE Joint Genome Institute (JGI) 3300009138 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Soil 37.4972 -122.1293 465454026 982796 487 6 850 13 SRX2523925 Unrestricted 0.0 Metagenome 3300008735 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um Georgia Genomics Facility 3300008735 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 821291623 1073224 380 1 520 4 0.0 Metagenome 3300045822 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_2_F DOE Joint Genome Institute (JGI) 3300045822 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 135163748 160458 89 1 99 1 Unrestricted 126.6 Metagenome 3300026767 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A1-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300026767 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 11614497 39406 72 0 128 0 SRX1991130 Unrestricted 0.0 Metagenome 3300000409 *Microbiome Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine sediment microbial community from Union City, CA, USA - Pond 2C Sediment 1 DOE Joint Genome Institute (JGI) 3300000409 Metagenome Analysis released based on JGI ITS Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Enviromental 37.569167 -122.1019 24779847 77851 87 0 144 0 Unrestricted 0.0 Metagenome 3300042459 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME27Jun2006D10-rr0719 DOE Joint Genome Institute (JGI) 3300042459 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 501326461 843676 194 29 298 55 Unrestricted 22.59 Metagenome 3300005468 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG DOE Joint Genome Institute (JGI) 3300005468 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 5108425512 13019115 2987 93 5292 193 SRX2745039 Unrestricted 0.0 Metagenome 3300042824 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117 NMDC pilot DOE Joint Genome Institute (JGI) 3300042824 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.91721605 -106.9559947 1333591618 3055075 547 20 974 38 SRX5354619 0.0 Metagenome 3300019752 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_1_MG DOE Joint Genome Institute (JGI) 3300019752 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Microbial mats Freshwater microbial mat 38.7906 -75.1644 241554440 482971 483 41 760 67 SRX3982598 Unrestricted 9.13 Metagenome 3300010295 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 2 OAHU.JWI-49 metaG DOE Joint Genome Institute (JGI) 3300010295 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms 21.4686 -157.8184 803909837 1156204 9 26 14 33 Unrestricted 0.0 Metagenome 3300060900 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210610_14_09 DOE Joint Genome Institute (JGI) 3300060900 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 382061937 542862 186 182 250 247 Unrestricted 33.88 Metagenome 3300013437 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100612 University of Pennsylvania 3300013437 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14364095 38637 18 0 34 0 SRX756482 0.0 Metagenome 3300043344 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 146-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043344 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9876 -107.0026 493280443 1393121 495 32 891 53 Unrestricted 6.74 Metagenome 3300009406 *Microbiome Permanent Draft Anaerobic oil degrading microbial communities from River Tyne estuarine sediment Microbial communities from sediment of the River Tyne Estuary, UK - Pasteurized_176d_1 SPAdes University of Liverpool 3300009406 Metagenome Analysis SPAdes released per JGI data release policy No Yes ian.head@ncl.ac.uk, ana.suarez-suarez@ncl.ac.uk; ian.head@ncl.ac.uk Ian Head, Ana Suarez-Suarez; Ian Head No Environmental Aquatic Unclassified Sediment Unclassified sediment 54.9632021 -1.6348029 195220738 403064 130 3 179 7 0.0 Metagenome 3300026789 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A2a-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300026789 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 20929890 72710 65 0 153 1 SRX2576216 Unrestricted 0.0 Metagenome 3300028563 *Microbiome Permanent Draft Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG DOE Joint Genome Institute (JGI) 3300028563 Metagenome Analysis spades v. 3.11.1 Yes Yes rbneum@uw.edu Rebecca Neumann No Host-associated Plants Rhizosphere Roots Soil rhizosphere 47.6516 -122.3045 606614826 1350800 397 5 654 7 SRX5271535 Unrestricted 11.62 Metagenome 3300014778 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS53_18 University of Hohenheim 3300014778 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 130497068 188439 71 0 136 0 0.0 Metagenome 3300070710 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lajas Experimental Station, Puerto Rico, USA - LAJA_003-M-20171129-COMP-DNA1 3300070710 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 1187 3 0 0 0 0 0.0 Metagenome 3300005609 *Microbiome Permanent Draft Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.1 DOE Joint Genome Institute (JGI) 3300005609 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jeremy.rich@maine.edu Jeremy Rich No Environmental Aquatic Coastal Marine Sediment Marine sediment 1478705300 4216414 1828 40 2995 88 SRX2837926 Unrestricted 0.0 Metagenome 3300000668 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 19 DOE Joint Genome Institute (JGI) 3300000668 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 3725998 11908 23 0 34 0 SRX4339511 Unrestricted 0.0 Metagenome 3300043203 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_4 (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043203 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 174817180 300105 58 4 99 5 SRX9140446 Unrestricted 79.59 Metagenome 3300000615 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 25JUL2007 epilimnion DOE Joint Genome Institute (JGI) 3300000615 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300040586 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_001-M-20140708-COMP-DNA1 Argonne National Laboratory 3300040586 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 1932243 5956 16 3 24 6 ERX2133992 0.0 Metagenome 3300003132 *Microbiome Permanent Draft Continuous culture Bioreactor microbial community inoculated with sediment from German Wadden Sea Bioreactor microbial community inoculated from Wadden Sea, Germany - 74 days of incubation Bielefeld University, Max Planck Institute for Marine Microbiology 3300003132 Metagenome Analysis MetaVelvet v. v0.3 Made public because these are downloaded from Genbank No Yes mstrous@mpi-bremen.de Marc Strous Yes 23227024 Engineered Bioreactor Marine sediment inoculum Continuous culture Unclassified Continuous culture Bioreactor 53.303 5.405473 18821199 33961 17 0 33 0 0.0 Metagenome 3300049567 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - AG_080817 DOE Joint Genome Institute (JGI) 3300049567 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Unclassified Soil Grasslands soil 41.893 -89.305 595571958 1652447 627 39 1282 76 Unrestricted 0.0 Metagenome 3300034133 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 12HMC DOE Joint Genome Institute (JGI) 3300034133 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological hypolithic biocrust 34.7856 -115.66 152635325 401203 381 24 697 36 SRX7614855 Unrestricted 8.71 Metagenome 3300015600 *Microbiome Permanent Draft Wastewater microbial communities from the domestic sewers Wastewater microbial communities from domestic sewers in Singapore - Site B Oct re-analysis Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300015600 Metagenome Analysis CLC workbench released by JGI data releasing policy No Yes erinscm@nus.edu.sg Charmaine Ng No Engineered Wastewater Unclassified Sewage Unclassified Wastewater 1.28362 103.859825 119867884 151753 32 1 29 0 0.0 Metagenome 3300013758 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A24_65cm_12M University of Tennessee 3300013758 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 214838416 505363 65 3 154 5 SRX710620 0.0 Metagenome 3300030461 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from healthy individual in Ann Arbor, USA - MG100167 University of Michigan 3300030461 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 42.28 -83.74 30578646 58349 73 0 113 0 0.0 Metagenome 3300002219 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Tailings pond microbial communities from Northern Alberta -Short chain hydrocarbon degrading methanogenic enrichment culture SCADC: McGill University 3300002219 Metagenome Analysis 139801 No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Built environment Petrochemical Tailings pond Wastewater Hydrocarbon resource environments 39.0042816 -77.1012173 7.26 621143985 859896 126 2 267 2 0.0 Metagenome 3300044706 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R DOE Joint Genome Institute (JGI) 3300044706 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 14.75 -16.85 807902859 1450953 364 47 650 66 Unrestricted 22.32 Metagenome 3300020454 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100001769 (ERX556037-ERR599170) CEA Genoscope 3300020454 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 35.8591 -37.1728 1352224439 3453624 577 73 1094 152 0.0 Metagenome 3300001381 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O2 DOE Joint Genome Institute (JGI) 3300001381 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 3307816 10536 129 48 200 91 SRX1985398, SRX1985399, SRX2021676 Unrestricted 0.0 Metagenome 3300070663 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_037-O-20200804-COMP-DNA1 3300070663 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 56253654 149145 71 0 153 1 0.0 Metagenome 3300056637 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.18C.14 SIP fraction DOE Joint Genome Institute (JGI) 3300056637 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 40000837 82951 34 13 70 18 Unrestricted 14.7 Metagenome 3300014604 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01348 Weill Cornell Medical College 3300014604 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.85 -73.82 26366378 39313 13 0 19 0 SRX823288 0.0 Metagenome 3300005882 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Hydrocarbon microbial community from Halfdan Field, North Sea, Denmark - MHF Shell Corporation 3300005882 Metagenome Analysis idba_ud released per JGI data release policy No Yes ebalsop@lbl.gov, nicolas.tsesmetzis@shell.com Eric Alsop, Nicolas Tsesmetzis No Environmental Aquatic Deep subsurface Marine Hydrocarbon water 55.49 7.42 404948961 639975 713 1 1028 2 0.0 Metagenome 3300069376 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Mountain Lake Biological Station, Appalachians & Cumberland Plateau, VA, USA - MLBS_005-M-20180611-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069376 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.37828 -80.52484 70861063 201167 79 6 159 12 0.0 Metagenome 3300023507 *Microbiome Permanent Draft Marine microbial mats from Loihi Seamount, Hawaii, USA Marine microbial mat from Loihi Seamout, Hawaii, USA - Marker 31 Individual Assembly Western Washington University 3300023507 Metagenome Analysis metaSPAdes v. 3.10.0 Metagenomes associated with bioRxiv doi:10.1101/722066 Yes Yes hfullerton@gmail.com; cmoyer@hydro.biol.wwu.edu; mcallis@uw.edu Heather Fullerton; Craig Moyer; Sean McAllister No Environmental Aquatic Hydrothermal vents Marine Microbial mats Marine 18.902 -155.257 259766108 334564 130 0 177 2 0.0 Metagenome 3300012210 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG DOE Joint Genome Institute (JGI) 3300012210 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.5673 -123.4758 2895359942 5682046 1846 74 3214 145 SRX3372765 Unrestricted 0.0 Metagenome 3300030250 *Microbiome Permanent Draft Human fecal microbial community of Hadza hunter-gatherer and regular subjects from Tanzania and Italy Human fecal microbial community of Hadza hunter-gatherer populations from Tanzania - 10011 University of Bologna 3300030250 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal -3.6347588 35.0828588 48386201 86996 105 0 188 0 0.0 Metagenome 3300009529 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG DOE Joint Genome Institute (JGI) 3300009529 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Oceanic Marine Sediment Deep subsurface 44.288 34.983 1764433912 3546323 960 80 1547 137 SRX7699232 Unrestricted 0.0 Metagenome 3300045255 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_4_D DOE Joint Genome Institute (JGI) 3300045255 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 174671368 215261 107 1 137 2 Unrestricted 102.69 Metagenome 3300050513 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation DOE Joint Genome Institute (JGI) 3300050513 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Host-associated Plants Rhizosphere Roots Soil Populus rhizosphere 35.8444 -83.9599 3590291033 8608230 1700 51 3314 95 SRX2923913 0.0 Metagenome 3300029263 *Microbiome Permanent Draft ACE Virus Marine viral community from the Austral Polar Province, Southern Ocean - ACE 064VCD University of Michigan 3300029263 Metagenome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes duhaimem@umich.edu Melissa Duhaime No Environmental Aquatic Unclassified Marine Unclassified Marine -62.3239 147.4162 213124356 368222 108 26 151 45 0.0 Metagenome 3300007747 *Microbiome Permanent Draft Fate of urine microbiome during the process of nutrient recovery Urine microbial communities from portable toilets in Brattleboro, Vermont, USA - before treatment The National High-throughput DNA Sequencing Centre, University of Michigan 3300007747 Metagenome Analysis Velvet 1.2.07 No Yes adey.desta@gmail.com Adey Desta No Engineered Wastewater Unclassified Unclassified Unclassified Collected urine from portable toilets 42.85 -72.55 103294813 179498 151 1 243 2 0.0 Metagenome 3300069595 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, Pacific Southwest, CA, USA - SJER_048-M-20170314-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069595 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.10878 -119.73228 47510579 137589 168 11 330 21 0.0 Metagenome 3300050199 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D15_SEK2_2_to_SEK2 DOE Joint Genome Institute (JGI) 3300050199 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.245 340463204 566717 153 49 217 63 Unrestricted 11.36 Metagenome 3300000526 *Microbiome Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Salt pond microbial community from Fremont, CA, USA - Pond A23 Liquid 2 DOE Joint Genome Institute (JGI) 3300000526 Metagenome Analysis released based on JGI ITS Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Salt pond 37.474067 -121.973033 56340557 121526 39 1 79 3 Unrestricted 0.0 Metagenome 3300006634 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_10_22 DOE Joint Genome Institute (JGI) 3300006634 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 37366011 80682 183 0 361 0 SRX2924868 Unrestricted 0.0 Metagenome 3300034982 *Microbiome Permanent Draft Extreme environments viral communities from various locations Sediment microbial communities from Lake Vrana, Zadar, Croatia - 22 bact DOE Joint Genome Institute (JGI) 3300034982 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Lake Freshwater Sediment sediment 43.8596 15.6388 212672559 437109 140 3 271 7 SRX8201731 Unrestricted 41.65 Metagenome 3300028954 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 504_B Beijing Genomics Institute (BGI) 3300028954 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 17005175 20231 18 0 21 0 ERX491153 0.0 Metagenome 3300038961 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample25 King Abdulaziz City for Science and Technology (KACST) 3300038961 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 22.2 37.55 19234303 52533 28 0 66 0 SRX1097592 0.0 Metagenome 3300041496 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG AgResearch, New Zealand, Mosgeil 3300041496 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Unclassified Roots Unclassified White clover root -43.648506 172.343549 938933464 1998386 224 23 718 79 0.0 Metagenome 3300020530 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020530 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 96528091 233107 64 7 122 8 SRX1989921 Unrestricted 0.0 Metagenome 3300003983 *Microbiome Permanent Draft Permafrost soil microbial communities from the Upper Dry Valleys, Antarctica University Valley permafrost Molecular Research LP (MR DNA) 3300003983 Metagenome Analysis unassembled released per JGI data release policy No Yes jackiegoordial@gmail.com Jackie Goordial No Environmental Terrestrial Sand Soil Desert Permafrost soil -82.95955 -132.89062 0 0 0 0 0 0 0.0 Metagenome 3300019839 *Microbiome Permanent Draft Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil - Babi_C2 Center for Advanced Technologies in Genomics, Sao Paulo University 3300019839 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 31807245 66986 61 1 99 1 0.0 Metagenome 3300035661 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Filamentous streamer microbial communities from Yellowstone Lake, YNP, Wyoming, USA - RO1DNA_8/2/18_2/3_streamer DOE Joint Genome Institute (JGI) 3300035661 Metagenome Analysis metaspades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Microbial mats filamentous streamer 44.5106 -110.3566 2192347008 3734689 1085 265 1621 384 SRX8282442 Unrestricted 23.22 Metagenome 3300025654 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110509 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025654 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de; agrieb@mpi-bremen.de Hanno Teeling; Anissa Grieb Yes 27054497, 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 444267515 816054 297 57 382 106 SRX2999670 Unrestricted 0.0 Metagenome 3300047272 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Potomac River, Virginia, USA - NASQAN2014_188 DOE Joint Genome Institute (JGI) 3300047272 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9295 -77.1169 596316687 1138618 194 9 264 13 Unrestricted 29.84 Metagenome 3300048814 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 P2 30-34 DOE Joint Genome Institute (JGI) 3300048814 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3534 19.0472 532345315 697922 111 2 131 1 Restricted 23.72 Metagenome 3300043177 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from California, United States - Mound Spring (MOS_S1) (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043177 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Warm (34-42C) Thermal springs Unclassified Desert spring 37.0233 -117.3845 6.89 879683410 1216630 375 5 582 4 SRX9166659 Unrestricted 16.54 Metagenome 3300009830 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 07 mira Center for Advanced Technologies in Genomics, Sao Paulo University 3300009830 Metagenome Analysis mira released per JGI data release policy No Yes joao.c.setubal@gmail.com Joao Setubal No Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 74945241 117013 265 4 325 8 0.0 Metagenome 3300060379 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210611_15_05 DOE Joint Genome Institute (JGI) 3300060379 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 559329192 794774 243 157 316 228 Unrestricted 38.64 Metagenome 3300029826 *Microbiome Permanent Draft Marine sediment microbial communities from New Orleans, USA to study impact of Deep Water Horizon explosion Marine sediment microbial communities from Jimmy Bay, New Orleans, USA to study impact of Deep Water Horizon explosion - N0247 Battelle Memorial Institute 3300029826 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Coastal Marine Sediment Marine sediment 29.44 -89.903 299701242 714336 307 3 581 5 0.0 Metagenome 3300028650 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N2_1 DOE Joint Genome Institute (JGI) 3300028650 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 545518785 1352536 744 95 1139 174 SRX5281746 Unrestricted 0.0 Metagenome 3300010313 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from South Africa to study Microbial Dark Matter (Phase II) - Sagole hot spring metaG DOE Joint Genome Institute (JGI) 3300010313 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring -22.5304 30.6814 407828631 843449 566 49 923 101 SRX2525296 Unrestricted 0.0 Metagenome 3300006930 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Enriched soil microbial communities from Old Woman Creek wetland in Ohio, USA - Methanogen_OWC DOE Joint Genome Institute (JGI) 3300006930 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified Enriched soil 40.178 -81.073 1429935107 4467463 1645 29 3050 49 SRX2925912 Unrestricted 0.0 Metagenome 3300008692 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 809635352 SPADES reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008692 Metagenome Analysis SPADES v3.7.0 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 175694558 448698 295 0 423 3 0.0 Metagenome 3300011725 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00198 Weill Cornell Medical College 3300011725 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.6 -74.0 34871544 51592 32 0 35 0 SRX822177 0.0 Metagenome 3300045810 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_3_A DOE Joint Genome Institute (JGI) 3300045810 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 167608716 205297 111 2 130 1 Unrestricted 110.75 Metagenome 3300026926 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized - NN335 (SPAdes) DOE Joint Genome Institute (JGI) 3300026926 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 7641167 25064 55 8 108 4 SRX1986451 Unrestricted 0.0 Metagenome 3300012855 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from TAMU algal ponds, Corpus Christi, Texas, USA - TAMU ARW-7 10/27 metagenome pilot DOE Joint Genome Institute (JGI) 3300012855 Metagenome Analysis MEGAHIT v. 1.0.6 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Engineered Artificial ecosystem Algae raceway pond Aquaculture Unclassified phycosphere 27.7828 -97.5621 118182846 191356 85 7 128 3 SRX7204008 Unrestricted 0.0 Metagenome 3300005992 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_14-Oct-14 DOE Joint Genome Institute (JGI) 3300005992 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 247555130 790846 471 77 916 156 SRX2838985 Unrestricted 0.0 Metagenome 3300026206 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV74 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026206 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 331953582 724895 256 5 467 15 SRX2782316 Unrestricted 0.0 Metagenome 3300005374 *Microbiome Permanent Draft Activated sludge microbial communities from Commune de Morges, Switzerland Activated sludge microbial communities from Commune de Morges, Switzerland - plasmid pool Morges (MIRA contigs) DOE Joint Genome Institute (JGI) 3300005374 Metagenome Analysis Newbler No Yes sgtringe@lbl.gov Susannah Tringe Yes 23407308 Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Activated sludge Wastewater plasmid pools 46.561314 6.536765 7.2 2205548 3344 1 0 1 0 0.0 Metagenome 3300025950 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLB_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025950 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.224518 -122.019257 120816346 267226 207 1 313 1 SRX7142933 Unrestricted 0.0 Metagenome 3300002372 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002372 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 16684808 47037 70 18 115 31 SRX1989922 Unrestricted 0.0 Metagenome 3300014900 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01261 Weill Cornell Medical College 3300014900 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.59 -73.97 18001861 32383 10 0 22 0 SRX823214 0.0 Metagenome 3300023116 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (version 2) DOE Joint Genome Institute (JGI) 3300023116 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1182290229 2342527 514 53 702 76 SRX4074030 Unrestricted 22.44 Metagenome 3300027443 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G05K4-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300027443 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 19542208 65079 80 3 137 4 SRX1991289 Unrestricted 0.0 Metagenome 3300004229 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 93_HOW11 DOE Joint Genome Institute (JGI) 3300004229 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 88258507 201043 40 0 79 1 SRX2721170 Unrestricted 0.0 Metagenome 3300047319 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere DOE Joint Genome Institute (JGI) 3300047319 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1212 -123.2695 1769581700 2852765 427 118 658 148 Unrestricted 14.76 Metagenome 3300021226 *Microbiome Permanent Draft Environmental DNA from pond Freshwater microbial communities from Taiko Pond in Toyama Prefecture, Japan-20161115, permeate Toyama Prefectural University 3300021226 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Pond Freshwater Unclassified freshwater 36.70814 137.09773 59235821 149199 20 5 43 11 0.0 Metagenome 3300032198 *Microbiome Permanent Draft STAs constructed wetland biome Wetland sediment microbial communities from Everglades, Florida, USA - STA34-Sample03_1 University of Florida 3300032198 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy No Yes ng.hanh24@gmail.com Hanh Nguyen No Environmental Aquatic Wetlands Freshwater Sediment sediment 26.38 -80.51 6.6-8.4 17315349 25030 15 0 36 0 0.0 Metagenome 3300055377 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.18C.13 SIP fraction DOE Joint Genome Institute (JGI) 3300055377 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 76750996 151996 61 35 107 36 Unrestricted 10.92 Metagenome 3300014220 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 256_L5_2014-7-7 San Diego State University 3300014220 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 159590 342 0 2 1 2 0.0 Metagenome 2228664012 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Tar lake microbial communities from La Brea, Trinidad and Tobago McGill University 2228664012 Metagenome Analysis released per user request No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Environmental Terrestrial Tar Asphalt lakes Unclassified Hydrocarbon resource environments 10.239333 -61.604991 67614831 195772 139 0 235 0 0.0 Metagenome 3300070722 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Mountain Lake Biological Station, Virginia, USA - MLBS_001-O-20180611-COMP-DNA1 3300070722 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 41099533 125361 91 3 162 9 0.0 Metagenome 3300047558 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Northeast Branch Anacostia River, Riverdale, Maryland, USA - nebranchanacostia_2019_sw_WHONDRS-S19S_0081 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047558 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9603 -76.9259 471397636 744974 301 159 553 204 Unrestricted 0.0 Metagenome 3300003893 *Microbiome Permanent Draft Rhopaloeides odorabile microbial communities from Davies Reef, Great Barrier Reef, Australia Rhopaloeides odorabile microbial communities from Davies Reef, Great Barrier Reef, Australia - sample3 3300003893 Metagenome Analysis IDBA-UD released by JGI data releasing policy Yes Yes n.webster@aims.gov.au Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Rhopaloeides odorabile -18.51 147.39 1340100969 5103054 2684 59 4770 115 0.0 Metagenome 3300037300 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Highway Lake #984 DOE Joint Genome Institute (JGI) 3300037300 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4599 78.2353 322350258 515686 147 68 205 81 SRX9174551 Unrestricted 28.09 Metagenome 3300011239 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 1 - S13.2.10.a - transect 2, age 0 years, surface depth) University of Bristol 3300011239 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes EAEloeFadrosh@lbl.gov; maisie.nash@bristol.ac.uk; ama@envs.au.dk Emiley Eloe-Fadrosh; Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 79.1005 12.15611 7.5 33376241 87933 126 9 170 15 0.0 Metagenome 3300042595 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Crepititermes verruculosus from Petit Saut, French Guiana, France - Crp329 Eurofins MWG Operon 3300042595 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 5.071383 -53.039049 833062148 827225 75 9 141 22 0.0 Metagenome 2088090017 *Microbiome Permanent Draft Marine microbial communities from Deepwater Horizon Oil Spill Marine microbial communities from Deepwater Horizon Oil Spill, sample DHOS BM58 plume DOE Joint Genome Institute (JGI) 2088090017 Metagenome Analysis released based on JGI ITS No Yes janet.jansson@pnnl.gov, janet.jansson@pnnl.gov; omason@fsu.edu Janet Jansson, Janet Jansson; Olivia Mason Yes 22717885 Environmental Aquatic Oceanic Marine Oil-contaminated Marine 28.672222 -88.4375 25346668 41802 30 4 61 0 Unrestricted 0.0 Metagenome 3300000561 *Microbiome Permanent Draft Soil microbial communities from Kansas Great Prairie, USA, amended with BrdU Amended soil microbial communities from Kansas Great Prairies, USA - acetate DNA F2.1B clc assemly DOE Joint Genome Institute (JGI) 3300000561 Metagenome Analysis Clc-workbench Released on PI's approval No Yes maude.david@yahoo.fr Maude David No Environmental Terrestrial Loam Soil Grasslands Soil 39.100992 -96.608258 890834920 4547943 340 125 767 199 0.0 Metagenome 3300022785 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY18 Version 2 University of New South Wales 3300022785 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 15972522 28121 12 0 26 0 0.0 Metagenome 3300005398 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV201 DOE Joint Genome Institute (JGI) 3300005398 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes frank.stewart@biology.gatech.edu Frank Stewart Yes 27487207 Environmental Aquatic Oceanic Marine Unclassified Marine 545205242 1385375 580 8 1062 14 SRX2782416 Unrestricted 0.0 Metagenome 3300037155 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 P1 40-44 DOE Joint Genome Institute (JGI) 3300037155 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0466 802467134 1411660 394 4 640 7 SRX8853766 Unrestricted 12.18 Metagenome 2022920002 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP3 Monarch Geyser, Norris Geyser Basin v3 (version 3) DOE Joint Genome Institute (JGI) 2022920002 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23720654 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.7242925 -110.7056131 4 17214260 31080 105 0 20 0 Unrestricted 0.0 Metagenome 3300050237 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Butler, South Dakota, USA - 98_887_SD_DR_0cm_c2_T1_18O DOE Joint Genome Institute (JGI) 3300050237 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 45.27223 -97.8369 932715547 1677970 389 13 732 38 Restricted 18.0 Metagenome 3300029861 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37399 Beijing Genomics Institute (BGI) 3300029861 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 191219001 238560 130 0 208 0 0.0 Metagenome 3300029147 *Microbiome Permanent Draft Environmental microbial communities from various locations to study antibiotic resistance - The University of Hong Kong Estuary sediment microbial communities from University of Hong Kong - Estuary Sediment University of Hong Kong 3300029147 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Unclassified Sediment Unclassified Estuary Sediment 4702194 14818 31 2 46 0 SRX371703 0.0 Metagenome 3300024327 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_120_MG DOE Joint Genome Institute (JGI) 3300024327 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca; shallam@interchange.ubc.ca Sean Crowe; Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5847 -123.5008 714600859 1342058 398 24 599 33 SRX4482640 Unrestricted 41.69 Metagenome 3300042376 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME01Aug2017-rr0783 DOE Joint Genome Institute (JGI) 3300042376 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 915436625 1448441 379 92 553 148 Unrestricted 14.62 Metagenome 3300030426 *Microbiome Permanent Draft Deep subsurface porewater microbial communities from Mt Terri URL, St-Ursanne, Switzerland Deep subsurface porewater microbial communities from Mt Terri URL, St-Ursanne, Switzerland - BRH_32 Swiss Federal Institute of Technology in Lausanne 3300030426 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Groundwater Freshwater Unclassified Deep subsurface porewater 47.37892341 7.16496703 196468518 259797 113 1 130 0 0.0 Metagenome 3300005153 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F07 DOE Joint Genome Institute (JGI) 3300005153 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 49534684 71161 79 0 123 0 SRX3195099 Unrestricted 0.0 Metagenome 3300012286 *Microbiome Permanent Draft Freshwater microbial communities from rivers and streams along an organic matter gradient associated with agriculture in Ontario, Canada Freshwater microbial communities from Ausable River, Ontario, Canada - S47 Molecular Research LP (MR DNA) 3300012286 Metagenome Analysis metaSPAdes released by JGI data releasing policy No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Unclassified Freshwater 43.22713 -81.5225 8.2 25345883 69497 14 0 25 1 0.0 Metagenome 3300045996 *Microbiome Permanent Draft Wetland soil microbial communities from various locations Soil microbial communities from agricultural land in Fort Collins, Colorado, USA - C_No_T20_C DOE Joint Genome Institute (JGI) 3300045996 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6529 -104.9995 10397802377 16683251 2485 319 3603 446 SRX11477538 Unrestricted 29.75 Metagenome 3300018070 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b1 DOE Joint Genome Institute (JGI) 3300018070 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 .9 771559447 1745079 989 25 1793 47 SRX3939618 Unrestricted 4.77 Metagenome 3300071043 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_004-M-20200708-COMP-DNA1 3300071043 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 233090 811 6 3 8 5 0.0 Metagenome 3300034789 *Microbiome Permanent Draft Marine planktonic microbial communities from Bay of Bengal, Indian Ocean Marine planktonic microbial communities from Bay of Bengal, Indian Ocean - 3M (SRX5580385-SRR8790590) Nanyang Technological University 3300034789 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released by JGI data releasing policy Yes Yes flauro@ntu.edu.sg Federico Lauro No Environmental Aquatic Unclassified Marine Unclassified Marine planktonic 4.43 88.2 613002439 1389374 465 266 805 360 0.0 Metagenome 3300026133 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_D1_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026133 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Soil 37.4972 -122.1293 169963205 401264 204 3 390 8 SRX3203233 Unrestricted 0.0 Metagenome 3300032174 *Microbiome Permanent Draft Hardwood forest soil microbial communities from various locations in the United States Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05 DOE Joint Genome Institute (JGI) 3300032174 Metagenome Analysis spades v. 3.12.0 Yes Yes jdraff@indiana.edu Jonathan Raff No Environmental Terrestrial Temperate forest Soil Bulk soil hardwood forest soil 39.0844 -86.4705 3867367305 9948975 1721 38 3155 82 SRX6409943 Unrestricted 7.01 Metagenome 2124908009 *Microbiome Draft Soil microbial communities from FACE and OTC sites in USA Soil microbial communities from sample at FACE Site Metagenome WIR_Amb2 DOE Joint Genome Institute (JGI) 2124908009 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes kuske@lanl.gov Cheryl Kuske No Environmental Terrestrial Unclassified Soil Unclassified Soil 45.68 -89.63 380912680 1057446 499 47 725 0 Unrestricted 0.0 Metagenome 3300007082 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina ""control"", cg10ic" University of New South Wales 3300007082 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au, n.webster@aims.gov.au; e.botte@aims.gov.au Nicole Webster, Nicole Webster; Emmanuelle BOTTE No Host-associated Porifera Unclassified Unclassified Unclassified Cinachyra sp. (marine sponge) -9.828217 150.820517 94869861 206412 79 5 129 6 0.0 Metagenome 3300027248 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1558A-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027248 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2763 -124.0055 105415515 239322 170 56 279 75 SRX2753755 Unrestricted 0.0 Metagenome 3300000234 *Microbiome Draft Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- GS09_5 DOE Joint Genome Institute (JGI) 3300000234 Metagenome Analysis released based on JGI ITS Yes Yes jlm80@psu.edu Jennifer Macalady No Environmental Aquatic Groundwater Freshwater Cave water Groundwater 43.383333 12.95 539638524 1025572 355 43 592 46 Unrestricted 0.0 Metagenome 3300035172 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 DOE Joint Genome Institute (JGI) 3300035172 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1125 -122.987 1925468497 4522530 1099 77 1844 130 SRX8289758 Unrestricted 7.2 Metagenome 3300046455 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere DOE Joint Genome Institute (JGI) 3300046455 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1208 -123.2692 981461166 1624176 298 86 556 98 Unrestricted 15.25 Metagenome 3300008079 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 160582958 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008079 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 120264565 146880 94 2 129 3 0.0 Metagenome 3300025138 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-40 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025138 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 50.0 -145.0 704794122 1453419 157 190 184 321 SRX2553662 Unrestricted 0.0 Metagenome 3300029468 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001965-95 Beijing Genomics Institute (BGI) 3300029468 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 118842701 131272 62 0 85 0 0.0 Metagenome 3300011197 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 5 - S13.2.30.a - transect 2, age 5 years, surface depth) University of Bristol 3300011197 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes EAEloeFadrosh@lbl.gov; maisie.nash@bristol.ac.uk; ama@envs.au.dk Emiley Eloe-Fadrosh; Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 79.11361111 12.19583333 6.5 10899365 30686 35 4 67 6 0.0 Metagenome 3300007276 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 DOE Joint Genome Institute (JGI) 3300007276 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes chenf@umces.edu, chenf@umces.edu; bcampb7@clemson.edu Feng Chen, Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.124826 -75.260873 595786635 1429713 86 4 156 6 SRX3300988, SRX3300989, SRX2745058 Unrestricted 0.0 Metagenome 2016842004 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP18 Washburn Springs #1 v1 DOE Joint Genome Institute (JGI) 2016842004 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23720654 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.7649458 -110.4303679 6.4 38709330 62242 24 0 44 0 Unrestricted 0.0 Metagenome 3300031254 *Microbiome Permanent Draft Extreme environments viral communities from various locations Sea salt microbial communities from Beaufort Sea near Barrow, Alaska, United States - SSS 0.2 DOE Joint Genome Institute (JGI) 3300031254 Metagenome Analysis spades v. 3.12.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Coastal Marine Unclassified sea salt 71.3731 -156.5049 13712487 27732 18 6 29 8 SRX5650310 Unrestricted 4956.78 Metagenome 3300048031 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_180328.NP2 DOE Joint Genome Institute (JGI) 3300048031 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 583447606 1247219 354 8 472 5 Unrestricted 18.49 Metagenome 3300021261 *Microbiome Permanent Draft Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States - Hamp_Cave_2 DOE Joint Genome Institute (JGI) 3300021261 Metagenome Analysis spades v. 3.11.1-check Yes Yes zachary.freedman@mail.wvu.edu Zachary Freedman No Environmental Terrestrial Surface mine Soil Reclaimed soil 39.458 -79.073 10838498 36115 89 8 182 18 SRX4029975 Unrestricted 6.64 Metagenome 3300009383 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS879 no minimum length Marine Biological Laboratory 3300009383 Metagenome Analysis Ray 2.3.1 (no min length) released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow diffuse flow hydrothermal vent 18.375 -81.797 6.91 68927963 275874 105 14 244 19 0.0 Metagenome 3300029415 *Microbiome Permanent Draft Human fecal microbial communities from healthy and liver cirrhosis patients in Hangzhou, China Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-6_Run5 Zhejiang University 3300029415 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 30.0 120.0 161769457 239617 172 0 296 0 0.0 Metagenome 3300013611 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100519 University of Pennsylvania 3300013611 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 6384199 10672 12 6 23 9 SRX756235 0.0 Metagenome 3300012072 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Georgia, USA - TSGA059 MetaG DOE Joint Genome Institute (JGI) 3300012072 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 33.0838 -81.7702 155922321 271010 61 148 102 295 SRX3539653 Unrestricted 0.0 Metagenome 3300013476 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Human oral microbial communities from various locations - University of British Columbia - SCG39 University of British Columbia 3300013476 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Unclassified Human oral 314300 942 2 0 3 0 SRX143148 0.0 Metagenome 3300025545 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_200m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025545 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 310090348 563325 232 9 319 9 Unrestricted 0.0 Metagenome 3300006158 *Microbiome Finished Marine microbial communities from the Red Sea brine-pools Marine microbial communities from the Red Sea brine-pool interfase layer Atlantis II King Abdullah University of Science and Technology 3300006158 Metagenome Analysis Newbler released per PI No Yes redcancerbero@gmail.com, alm067@ucsd.edu Alvaro M. Plominsky No Environmental Aquatic Unclassified Marine Unclassified Marine 21.60528 38.2025 591205 2498 0 0 4 0 0.0 Metagenome 3300005799 *Microbiome Permanent Draft Sediment microbial communities of hot springs in Rotorua, New Zealand Sediment microbial communities of hot springs in Rotorua, New Zealand - Waimangu hot spring, NZ8 Oak Ridge National Laboratory 3300005799 Metagenome Analysis IDBA_UD v. 1.1.0 released per JGI data release policy No Yes bwar@pdx.edu Anna-Louise Reysenbach No Environmental Aquatic Sediment Thermal springs Unclassified thermal hot springs -38.282851 176.398825 7.5 81744932 156815 63 1 73 0 0.0 Metagenome 3300023180 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (version 2) DOE Joint Genome Institute (JGI) 3300023180 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1299351976 2540716 526 64 761 99 SRX4074063 Unrestricted 23.66 Metagenome 3300040522 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_003-M-35-15-20140415-GEN-DNA1 Argonne National Laboratory 3300040522 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 2717478 8362 21 1 38 1 ERX2133934 0.0 Metagenome 3300001492 *Microbiome Permanent Draft Human axilla skin microbial communities from the University of Liverpool, UK Human axilla skin microbial communities from the University of Liverpool, UK - AX20 3300001492 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Host-associated Mammals: Human Skin Integumentary system Axilla/Armpit Human axilla skin 53.3484 -3.009 9323077 15181 18 0 45 0 0.0 Metagenome 3300026961 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media from Eden Landing Ponds, California, USA - A23 M3 (SPAdes) DOE Joint Genome Institute (JGI) 3300026961 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Enviromental 37.840854 -122.289843 68127305 107230 50 0 57 0 SRX2865306 Unrestricted 0.0 Metagenome 3300036954 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - 2S-I DOE Joint Genome Institute (JGI) 3300036954 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 1166845817 2302771 950 174 1462 278 SRX8361023 Unrestricted 8.44 Metagenome 7000000262 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 764224817 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000262 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 105893443 166729 0 0 0 0 0.0 Metagenome 3300017988 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin02_30_metaG DOE Joint Genome Institute (JGI) 3300017988 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 2121570615 3693799 1153 13 1950 27 SRX3890438 Unrestricted 11.27 Metagenome 3300071131 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_044-M-20190717-COMP-DNA1 3300071131 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 8418805 25925 31 5 71 6 0.0 Metagenome 3300022066 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 37 SPOT_SRF_2012-11-28 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022066 Metagenome Analysis spades v. 3.11.1-check Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 25310228 76826 16 1 29 4 SRX5471844, SRX5471843, SRX5471842 Unrestricted 0.0 Metagenome 3300064956 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 744 in Lacombe, Alberta, Canada - S00JY_0524 Microbiome Insights 3300064956 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.27312777 -113.310707 442673437 601410 111 0 168 0 0.0 Metagenome 3300025406 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_11_10 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025406 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 141448281 312028 122 13 203 20 SRX3003282 Unrestricted 0.0 Metagenome 3300070929 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_002-M-20190930-COMP-DNA1 3300070929 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 8075275 24274 34 0 74 1 0.0 Metagenome 3300050026 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 S1 50-54 DOE Joint Genome Institute (JGI) 3300050026 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.0474 514146049 692436 134 2 159 0 Restricted 31.19 Metagenome 3300026041 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026041 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 4068315428 9508504 1590 146 2992 231 SRX2782926 Unrestricted 0.0 Metagenome 3300022317 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1OPP3 JM102 AGRF 3300022317 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 43652324 72998 37 0 64 0 0.0 Metagenome 3300029609 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36439 Beijing Genomics Institute (BGI) 3300029609 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 215490466 265561 180 1 266 0 0.0 Metagenome 3300034388 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B3A4.2 DOE Joint Genome Institute (JGI) 3300034388 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 414487500 1072613 550 0 1033 0 SRX7658949 Unrestricted 6.86 Metagenome 3300033095 *Microbiome Permanent Draft Mercury Periphyton Project Periphyton microbial communities from the St. Maurice River, Quebec, Canada - S1.A.t0 reanalysis Genome Quebec 3300033095 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Periphyton Freshwater periphyton 47.885464 -73.754885 665719195 1173516 425 164 826 331 0.0 Metagenome 3300045886 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P12SS CTRL_191116_f DOE Joint Genome Institute (JGI) 3300045886 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 598396577 959012 242 2 389 2 SRX20650851 Unrestricted 12.36 Metagenome 3300045277 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_5_D DOE Joint Genome Institute (JGI) 3300045277 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 192598737 225970 115 1 137 1 Unrestricted 109.8 Metagenome 3300007869 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764305738 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007869 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 54376829 97643 38 0 61 0 0.0 Metagenome 3300024505 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepA_8h DOE Joint Genome Institute (JGI) 3300024505 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 151727743 342305 163 15 260 26 SRX4547327 Unrestricted 12.27 Metagenome 3300026825 *Microbiome Permanent Draft Cyanobacterial communities from the Joint Genome Institute, California, USA Cyanobacterial communities from the Joint Genome Institute, California, USA - FECB-22 (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300026825 Metagenome Analysis spades v. 3.11.1 Yes Yes mhess@ucdavis.edu Matthias Hess No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Cyanobacterial 37.9313884 -122.0239394 82345343 102105 36 0 33 1 SRX7697656 Unrestricted 0.0 Metagenome 3300070973 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_046-M-20180717-COMP-DNA1 3300070973 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 15866154 47522 40 4 82 7 0.0 Metagenome 3300030347 *Microbiome Permanent Draft Nasopharyngeal microbial communities from infants in Muntinlupa City, Philippines and Johannesburg, South Africa Nasopharyngeal microbial communities from infants in Muntinlupa City, Philippines - RITM081I12 J. Craig Venter Institute 3300030347 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Respiratory system Nasopharynx Nasopharyngeal 14.4098512 121.034836 11443752 13217 9 0 3 0 SRX1670512 0.0 Metagenome 3300012956 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater, Klosterneuburg, Austria - Klosneuvirus_20160825_MG DOE Joint Genome Institute (JGI) 3300012956 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified active sludge 48.3 16.2 2478304964 4576883 1506 86 2331 174 SRX3539846 Unrestricted 9.43 Metagenome 3300031680 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22 DOE Joint Genome Institute (JGI) 3300031680 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1854918225 4493404 608 12 1035 12 SRX5665913 Unrestricted 12.31 Metagenome 3300060589 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210614_18_21 DOE Joint Genome Institute (JGI) 3300060589 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 499133991 707088 233 176 332 231 Unrestricted 35.34 Metagenome 3300003851 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius ullae BAHAMAS.1 DOE Joint Genome Institute (JGI) 3300003851 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 99535582 288170 3 3 3 2 SRX3340610 Unrestricted 0.0 Metagenome 3300043155 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - HLP_101317 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043155 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.896 -89.3636 17987242 55491 76 9 157 10 SRX9381783 Unrestricted 20.65 Metagenome 3300039919 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_004-M-20170801-COMP-DNA1 Battelle Memorial Institute 3300039919 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 22256698 61676 58 5 91 12 0.0 Metagenome 3300024446 *Microbiome Permanent Draft Vaginal microbial communities from lab mice Vaginal microbial communities from healthy lab mice, Madrid, Spain - A3, day 20 Polytechnic University of Valencia 3300024446 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Vagina Reproductive system Unclassified mice vagina 40.4191094 -3.6725753 934984 1431 0 0 0 0 0.0 Metagenome 3300049220 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - C9_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049220 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 129016495 276222 221 7 432 14 Unrestricted 0.0 Metagenome 3300027566 *Microbiome Permanent Draft Bioremediated contaminated groundwater microbial communities from North Railroad Avenue plume (NRAP), New Mexico Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample HSE6-05 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027566 Metagenome Analysis spades v. 3.11.1 Yes Yes NNIvanova@lbl.gov; rebecca.reiss@nmt.edu Natalia Ivanova; Rebecca Reiss Yes 27980706 Environmental Aquatic Groundwater Deep subsurface Contaminated Bioremediated contaminated groundwater 35.9918 -106.0796 398670463 657956 355 5 547 5 SRX2554406 Unrestricted 0.0 Metagenome 3300002744 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK07-B DOE Joint Genome Institute (JGI) 3300002744 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.43 -89.41 45813 140 13 1 23 3 SRX1991347 Unrestricted 0.0 Metagenome 3300041485 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_PF_150_PacBio MetaG (version 2) DOE Joint Genome Institute (JGI) 3300041485 Metagenome Analysis metaFlye v. 2.5-release released based on JGI ITS Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Seawater 18.2 -104.2 1100379 1296 0 2 0 0 SRX8127206 Unrestricted 0.0 Metagenome 3300069586 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Abby Road, Pacific Northwest, WA, USA - ABBY_062-M-20170606-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069586 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.76243 -122.33033 57385998 176333 107 9 196 6 0.0 Metagenome 7000000233 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765094712 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000233 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 81430023 149727 0 0 0 0 0.0 Metagenome 3300001571 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP1493 DOE Joint Genome Institute (JGI) 3300001571 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -25.49 -179.52 17352071 40504 40 33 59 36 SRX1982444 Unrestricted 0.0 Metagenome 3300005360 *Microbiome Permanent Draft Acid Mine Drainage (AMD) microbial and viral communities from Richmond mine, Iron Mountain, CA Acid Mine Drainage (ARMAN) microbial communities from Richmond mine, Iron Mountain, CA, sample from Ultra Back A BS v2 (version 2) DOE Joint Genome Institute (JGI), University of California, Berkeley 3300005360 Metagenome Analysis Unkonwn released based on JGI ITS No Yes jill@eps.berkeley.edu, jbanfield@berkeley.edu Banfield, Jillian F., Jill Banfield Yes 14961025 Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid Mine Drainage (AMD) 40.678099 -122.515068 0.83-1.28 10830875 12568 5 0 9 0 Unrestricted 0.0 Metagenome 3300005742 *Microbiome Permanent Draft Microbial community analysis of soil from Ankleshwar, Gujarat, India Microbial community analysis of soil from Ankleshwar, Gujarat, India - Polluted 1 Anand Agricultural University 3300005742 Metagenome Analysis Unknown released per JGI data release policy No Yes jennyjohnsongreat@gmail.com Jenny Johnson No Environmental Terrestrial Unclassified Soil Unclassified soil 21.6 73.0 0 0 0 0 0 0 0.0 Metagenome 3300001449 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample F53-3 shallow DOE Joint Genome Institute (JGI) 3300001449 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 90618094 215475 101 19 168 35 SRX1987724 Unrestricted 0.0 Metagenome 3300031894 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18 DOE Joint Genome Institute (JGI) 3300031894 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 813354885 1988891 291 2 435 3 SRX5818183 Unrestricted 12.01 Metagenome 3300049900 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume viral communities from Gulf of California, Mexico - CTD-FK190211-01-585m-0.03 v DOE Joint Genome Institute (JGI) 3300049900 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 27.00134 -111.41153 46448297 136660 13 3 15 5 Restricted 175.49 Metagenome 3300007887 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765094712 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007887 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 16439112 36096 19 0 37 0 0.0 Metagenome 3300010308 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial mat communities from California, USA to study Microbial Dark Matter (Phase II) - Cone Pool mat layer E metaG (version 2) DOE Joint Genome Institute (JGI) 3300010308 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; jspear@mines.edu Ramunas Stepanauskas; John Spear No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 221865887 412766 262 4 435 6 SRX7204507 Unrestricted 0.0 Metagenome 3300042510 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR pl3 DOE Joint Genome Institute (JGI) 3300042510 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 753951823 1154529 287 74 376 96 Unrestricted 19.13 Metagenome 3300038671 *Microbiome Finished Marine algae associated bacterial community from Sydney, Australia Marine algae associated bacterial community from Sydney, Australia - Ulva australis_3R1 Ramaciotti Centre for Genomics 3300038671 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes j.nappi@unsw.edu.au Jadranka Nappi No Host-associated Algae Unclassified Unclassified Unclassified Marine -33.990304 151.231529 517452732 745221 91 16 202 18 0.0 Metagenome 3300038416 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P13_D10 DOE Joint Genome Institute (JGI) 3300038416 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 647442961 898018 220 2 295 4 SRX9404368 Unrestricted 44.38 Metagenome 3300011440 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT840_2 DOE Joint Genome Institute (JGI) 3300011440 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8895 -106.9075 525510084 1140028 397 39 721 77 SRX3539216 Unrestricted 0.0 Metagenome 3300010935 *Microbiome Permanent Draft Marine microbial community from intertidal zone in Alaska, USA Marine microbial community from intertidal zone in Alaska, USA - Site 13 University of Delaware 3300010935 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes heather.fullerton@wwu.edu, hfullerton@gmail.com Heather Fullerton No Environmental Aquatic Fossil Marine Whale fall Marine 55.205 -132.825 356463300 502483 224 23 330 26 0.0 Metagenome 3300048512 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - Jacob461 DOE Joint Genome Institute (JGI) 3300048512 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Sand Soil Desert sand -78.0786 164.1091 442017031 943491 376 1 638 1 Unrestricted 20.41 Metagenome 3300026480 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-B DOE Joint Genome Institute (JGI) 3300026480 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 189066356 498596 274 10 505 15 SRX4803889 Unrestricted 9.98 Metagenome 3300047095 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME22Aug2008-rr0980 DOE Joint Genome Institute (JGI) 3300047095 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1010314215 1518579 425 31 561 48 Unrestricted 0.0 Metagenome 3300070419 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Alabama, USA - LENO_006-M-20180709-COMP-DNA1 3300070419 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 9749340 29785 34 5 65 8 0.0 Metagenome 3300001188 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from University of Liverpool Illum_500pgPark_IDBAUD University of Liverpool 3300001188 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 5291852 14170 28 0 58 0 0.0 Metagenome 3300003458 *Microbiome Permanent Draft Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S4-DC05A 3300003458 Metagenome Analysis released per JGI data releasing policy No Yes julie.champagne@cnrc-nrc.gc.ca Julie Champagne No Environmental Aquatic Neritic zone/Coastal water Marine Sediment Marine sediment 53.6667 -129.1333 54900500 203011 84 0 146 2 0.0 Metagenome 3300049604 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA8 DOE Joint Genome Institute (JGI) 3300049604 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 412505996 1036465 398 3 766 4 Unrestricted 7.69 Metagenome 3300043009 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver proximal colon microbial communities from Maple Ridge, British Columbia, Canada - Beaver3Prox.Colon1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043009 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Proximal colon proximal colon 49.18 -122.54 54166487 88209 105 2 158 5 SRX8345899 Unrestricted 133.26 Metagenome 3300041539 *Microbiome Draft Fumarole sediment bacterial commnuities from geothermic field Los Azufres, Michoacan, Mexico Fumarole sediment bacterial commnuities from Los Azufres Spa, Michoacan, Mexico - B v.2 Macrogen Inc 3300041539 Metagenome Analysis SPAdes v. 3.8 released by JGI data releasing policy No Yes hhbolivart@unal.edu.co Hermes Hernan Bolivar-Torres No Environmental Terrestrial Fumaroles Volcanic Unclassified Fumarole sediment 19.7816 -100.6577 212483465 319741 97 13 124 24 0.0 Metagenome 2029527005 *Microbiome Permanent Draft Leaf cutter ant microbial communities from the University of Wisconsin-Madison, USA, from fungus growing ant-garden Atta colombica fungus garden Top DOE Joint Genome Institute (JGI) 2029527005 Metagenome Analysis Newbler released based on JGI ITS No Yes currie@bact.wisc.edu Cameron Currie Yes 22378535 Environmental Terrestrial Insects nest Nest Fungus garden/Fungus gallery Leaf cutter ant 9.1167 -79.7 100904834 241664 27 0 58 0 Unrestricted 0.0 Metagenome 3300019706 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLT_1-2_MG DOE Joint Genome Institute (JGI) 3300019706 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 103250114 256383 222 21 401 35 Unrestricted 3.54 Metagenome 3300036819 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in California, United States - CAM_4 DOE Joint Genome Institute (JGI) 3300036819 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil 36.5 -121.8 2524130182 3769478 595 84 814 121 SRX8386824 Unrestricted 14.15 Metagenome 3300025216 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP-109 (SPAdes) DOE Joint Genome Institute (JGI) 3300025216 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es; mbsulli@gmail.com Silvia G. Acinas; Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 18.064 -133.3152 103850879 196521 72 0 88 0 SRX4915167 Unrestricted 0.0 Metagenome 3300065635 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 815 in Dunmore, Alberta, Canada - S00JY_0042 Microbiome Insights 3300065635 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.5656823 -110.2741187 277848133 394829 78 2 136 0 0.0 Metagenome 3300008364 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763577454 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008364 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 105224851 161985 58 0 79 0 0.0 Metagenome 3300011602 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00753 Weill Cornell Medical College 3300011602 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.76 -73.97 28763006 39385 17 0 24 0 SRX822719 0.0 Metagenome 3300044520 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - LOSB17-9-18-19 DOE Joint Genome Institute (JGI) 3300044520 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 36.0052 -120.8555 528007602 1255361 511 35 827 61 Restricted 7.09 Metagenome 7000000014 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160603188 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000014 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 40118741 84406 0 0 0 0 0.0 Metagenome 3300050508 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation DOE Joint Genome Institute (JGI) 3300050508 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Host-associated Plants Rhizosphere Roots Soil Populus rhizosphere 35.8443 -83.9607 3171614382 7047224 1445 44 2705 91 SRX2843348 0.0 Metagenome 3300007997 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764083206 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007997 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 152661998 210433 114 0 117 0 0.0 Metagenome 3300070605 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone National Park, Wyoming, USA - YELL_016-M-20190819-COMP-DNA1 Battelle Memorial Institute 3300070605 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 44.965771 -110.583711 6.39-7.63 15726891 47541 93 5 152 7 0.0 Metagenome 3300009452 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge C. singaporensis. microbiome, Papua New Guinea CO2 seep, Upa-Upasina ""bubble"", co31is 06june2016" University of New South Wales 3300009452 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au; e.botte@aims.gov.au Nicole Webster; Emmanuelle BOTTE No Host-associated Porifera Unclassified Unclassified Unclassified Coelocarteria singaporensis (marine sponge) -9.8241 150.825833 12073252 29031 22 0 24 5 0.0 Metagenome 3300060435 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210606_10_09 DOE Joint Genome Institute (JGI) 3300060435 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 788607085 1173812 335 232 435 303 Unrestricted 26.36 Metagenome 3300020271 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000678 (ERX556013-ERR599096) CEA Genoscope 3300020271 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -8.978 -139.2432 255555755 648629 268 12 482 33 0.0 Metagenome 3300029925 *Microbiome Permanent Draft Crustal fluid microbial communities from North Pond, Mid-Atlantic Ridge, Atlantic Ocean 2014 cruise Crustal fluid microbial communities from North Pond, Mid-Atlantic Ridge, Atlantic Ocean - 1383CD 2014 kmer 100 Marine Biological Laboratory 3300029925 Metagenome Analysis IDBA-UD v. 1.1.2 released by JGI data releasing policy No Yes lmseyler@gmail.com Lauren Seyler No Environmental Aquatic Oceanic Marine Unclassified Oceanic crustal fluids 22.75 -46.083 94357218 133540 88 4 138 4 0.0 Metagenome 3300029490 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001929-16 Beijing Genomics Institute (BGI) 3300029490 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 198116432 238319 141 0 215 0 0.0 Metagenome 3300005584 *Microbiome Permanent Draft Freshwater lentic microbial communities from the great Laurentian Lakes, MI, USA for biogeochemical studies Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF DOE Joint Genome Institute (JGI) 3300005584 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified Freshwater lentic 44.701094 -82.854085 658324428 1752557 444 54 719 79 SRX2577338 Unrestricted 0.0 Metagenome 3300061644 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_003-O-20210622-comp-1 DOE Joint Genome Institute (JGI) 3300061644 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 45.831516 -122.018608 2765904913 4327173 400 87 620 139 Unrestricted 14.95 Metagenome 3300053734 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 endosphere DOE Joint Genome Institute (JGI) 3300053734 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.120803 -123.271378 195265586 391449 105 69 153 88 Unrestricted 0.0 Metagenome 3300026162 *Microbiome Permanent Draft Anaerobic reactors microbiome study Activated sludge microbial communities from lab. scaled anaerobic digester in Belvaux, Luxembourg - ACS0-21 University of Luxembourg 3300026162 Metagenome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 49.506216 5.943617 345679882 413568 116 3 236 4 0.0 Metagenome 3300041820 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - TR_35_wk_4 DOE Joint Genome Institute (JGI) 3300041820 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9957 -107.075 199520776 520877 164 13 339 17 SRX14809571 Unrestricted 7.37 Metagenome 3300002582 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Downstream of discharge Sample CS4-25 454 Life Sciences 3300002582 Metagenome Analysis Genomes released to public per request from Dong Li (May 30 2014) No Yes lidong460@gmail.com Dong Li No Environmental Aquatic River Freshwater Sediment Freshwater sediment 21.34876 40.487145 6-8 0 0 0 0 0 0 0.0 Metagenome 3300031984 *Microbiome Permanent Draft Microbial communities from the deep biosphere Subseafloor sediment microbial communities from the Andaman Sea, Indian Ocean - Site17A_554mbsf re-assembly The Marine Biological Laboratory 3300031984 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Sediment Marine Unclassified Sediment 11.2811 93.1 67790004 183474 92 19 170 50 SRX986764, SRX342193 0.0 Metagenome 3300029205 *Microbiome Permanent Draft Synthetic microbial community for library methods comparison from University of Liverpool, United Kingdom Synthetic microbial communities for library methods comparison from University of Liverpool, United Kingdom - Mg47 University of Liverpool 3300029205 Metagenome Analysis released Yes Yes No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 53.405936 -2.9677609 111541954 166796 121 0 121 0 ERX1325909 0.0 Metagenome 3300000700 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 56 DOE Joint Genome Institute (JGI) 3300000700 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 9381243 28305 35 0 61 0 SRX4341057 Unrestricted 0.0 Metagenome 3300042750 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_2-Sept-14 NMDC pilot DOE Joint Genome Institute (JGI) 3300042750 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 46120146 112255 133 37 227 76 SRX2838885 0.0 Metagenome 3300044839 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_42BS DOE Joint Genome Institute (JGI) 3300044839 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4983 -106.0735 815620834 1317685 295 47 490 72 SRX20649726 Unrestricted 14.98 Metagenome 3300002615 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A1-12 DOE Joint Genome Institute (JGI) 3300002615 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 284033 979 26 0 44 0 SRX1991135 Unrestricted 0.0 Metagenome 3300042586 *Microbiome Permanent Draft Whole genome sequencing of bacteria isolated from intertidal zone macroalgae Co-culture of Algibacter sp. and Cellulophaga sp. from the University of Maine, Orono, USA - 25 Marine Biological Laboratory 3300042586 Metagenome Analysis SPAdes v. 3.14.0 released by JGI data releasing policy No Yes vfrazier@mbl.edu Victoria Frazier No Host-associated Algae Unclassified Brown Algae Unclassified defined medium 44.89404733 -68.67282384 8.2 8647125 7786 4 0 3 0 0.0 Metagenome 3300022796 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY6 Version 2 University of New South Wales 3300022796 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 19869514 35250 11 0 15 0 0.0 Metagenome 3300033272 *Microbiome Permanent Draft Meromitic Lake A Freshwater microbial communities from meromitic lake A, Ellesmere Island, Canada - Sample 2m re-sequencing Laval University 3300033272 Metagenome Analysis SPADES v. 3.10.1 released by JGI data releasing policy Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 82.99445 -75.443367 548460451 2274238 253 58 506 150 0.0 Metagenome 3300038480 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 E3 1-5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300038480 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0468 309609227 853161 475 33 821 41 SRX8138930, SRX8138929 Unrestricted 0.0 Metagenome 3300027521 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027521 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 264778874 650226 190 32 355 53 SRX3312008 Unrestricted 0.0 Metagenome 3300005087 *Microbiome Permanent Draft Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich - 106-01I-102 University of Cincinnati 3300005087 Metagenome Analysis Velvet v. 0.7.57 released per JGI data release policy No Yes rlamendella@lbl.gov Regina Lamendella No Environmental Aquatic Groundwater Freshwater Contaminated Groundwater 40.0 -74.5 0 0 0 0 0 0 0.0 Metagenome 3300037177 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 P1 10-14 DOE Joint Genome Institute (JGI) 3300037177 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3545 19.0465 724261970 1493922 280 38 506 66 SRX8144880 Unrestricted 7.25 Metagenome 3300004273 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_135m DOE Joint Genome Institute (JGI) 3300004273 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 418952076 955985 404 8 691 13 Unrestricted 0.0 Metagenome 3300049456 *Microbiome Permanent Draft Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA - 4_s_oct_JRB_CZO DOE Joint Genome Institute (JGI) 3300049456 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dawsonfairbanks@email.arizona.edu Dawson Fairbanks No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.8832033 -106.53744 1503879832 2393835 337 13 546 21 Unrestricted 14.81 Metagenome 3300028284 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_10 DOE Joint Genome Institute (JGI) 3300028284 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified marine 48.6 -123.5 298555404 512665 195 23 231 42 SRX5244709 Unrestricted 38.11 Metagenome 3300069510 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_047-O-20170621-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069510 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 28613204 83670 39 11 68 16 0.0 Metagenome 3300006724 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 160218816 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300006724 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 2844761 7062 9 0 24 0 SRX023265, SRX023264 0.0 Metagenome 3300028819 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153 DOE Joint Genome Institute (JGI) 3300028819 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92057636 -106.94874802 1582820995 3769260 574 23 1112 27 SRX5354695 Unrestricted 11.71 Metagenome 3300006351 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0045m University of Hawaii 3300006351 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 527776734 1185828 518 21 767 38 0.0 Metagenome 3300046477 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere DOE Joint Genome Institute (JGI) 3300046477 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1216 -123.269 1026131354 1710930 314 94 496 132 Unrestricted 13.13 Metagenome 3300005949 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil leachate replicate DNA2013-051 DOE Joint Genome Institute (JGI) 3300005949 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Soil 68.6137 -149.3144 416556375 1282477 520 6 1023 15 SRX2739460 Unrestricted 0.0 Metagenome 3300031471 *Microbiome Permanent Draft Rock endolithic microbial communities from Victoria Land, Antarctica Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead sud DOE Joint Genome Institute (JGI) 3300031471 Metagenome Analysis spades v. 3.12.0 Yes Yes selbmann@unitus.it Laura Selbmann Yes 32139564 Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock -77.9 161.58 977104653 1475671 169 64 208 75 SRX5229343 Unrestricted 23.38 Metagenome 3300015060 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01259 Weill Cornell Medical College 3300015060 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.63 -73.97 29408697 48137 17 0 26 0 SRX823212 0.0 Metagenome 3300039278 *Microbiome Permanent Draft Soil microbial communities from the crude oil polluted soil from Bobrka and the control soil from Bialowieza national park, Poland Contaminated soil microbial communities from oil field in Bobrka, Poland - X1A3 Illumina 3300039278 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy No Yes valeria.imperato@uhasselt.be Valeria Imperato No Environmental Terrestrial Unclassified Soil Oil-contaminated Contaminated soil 49.62633083 21.69249723 65302 69 1 0 1 0 0.0 Metagenome 3300055084 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_43-s37 day 210 DOE Joint Genome Institute (JGI) 3300055084 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1216414071 1726588 213 145 307 161 Unrestricted 45.63 Metagenome 3300031616 *Microbiome Permanent Draft Soil and ectomycorrhiza microbial communities from Populus trichocarpa stands in riparian zones in the Pacific Northwest, United States Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM DOE Joint Genome Institute (JGI) 3300031616 Metagenome Analysis spades v. 3.12.0 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Plants Unclassified Roots Unclassified ectomycorrhiza 45.0822 -123.061 1919108759 3340680 504 117 766 204 SRX5650617 Unrestricted 18.92 Metagenome 3300001704 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3-11 DOE Joint Genome Institute (JGI) 3300001704 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 445191 1615 30 0 56 1 SRX1990523 Unrestricted 0.0 Metagenome 3300022845 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #602 DOE Joint Genome Institute (JGI) 3300022845 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 127278965 242577 110 4 141 13 SRX4397123 Unrestricted 19.77 Metagenome 7000000517 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 159591683 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000517 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 44743 67 0 0 0 0 SRX022949, SRX022948 0.0 Metagenome 3300002409 *Microbiome Permanent Draft Oral microbial communities of human periodontal tissues causing gingivitis or periodontitis Human oral microbial communities of human periodontal tissues causing gingivitis - test sample 3300002409 Metagenome Analysis released per JGI data releasing policy No Yes fjliao@gmail.com Ji-Liao Park No Host-associated Mammals: Human Oral cavity Digestive system Unclassified Oral 23.7 120.9 58194 165 2 0 0 0 0.0 Metagenome 3300031549 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24 DOE Joint Genome Institute (JGI) 3300031549 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1110820267 3024633 332 1 553 12 SRX5665942 Unrestricted 24.69 Metagenome 3300040459 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_001-M-20140116-COMP-DNA1 Argonne National Laboratory 3300040459 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 3412905 10610 26 3 55 7 ERX2133927 0.0 Metagenome 3300039712 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - NIWO_006-M-20160829-COMP-DNA1 Battelle Memorial Institute 3300039712 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.05425 -105.58237 49371625 130883 109 6 181 11 0.0 Metagenome 3300012295 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100722 University of Pennsylvania 3300012295 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 5911529 11146 18 5 36 9 SRX756128 0.0 Metagenome 3300034181 *Microbiome Permanent Draft Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China - SA4 Sun Yat-Sen University 3300034181 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy No Yes yuxiaoli92@163.com Xiaoli Yu No Environmental Aquatic Intertidal zone Marine Mangrove sediment mangrove sediment 23.45 116.43 535566813 1231704 440 42 973 97 0.0 Metagenome 3300005069 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024 University of Michigan 3300005069 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lentic Freshwater Unclassified Freshwater -77.611214 163.119356 488136759 921353 36 44 49 68 0.0 Metagenome 3300056727 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.18W.6 SIP fraction DOE Joint Genome Institute (JGI) 3300056727 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 152230371 281544 82 6 150 9 Unrestricted 15.96 Metagenome 3300027314 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1561A-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027314 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2637 -123.4651 218287227 460540 160 27 272 30 SRX2753756 Unrestricted 0.0 Metagenome 3300070632 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Florida, USA - DSNY_043-M-20170830-COMP-DNA1 3300070632 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 2529018 8125 24 5 35 7 0.0 Metagenome 3300005191 *Microbiome Permanent Draft Mallorca 2014 E5 E5 T8 University of Alicante 3300005191 Metagenome Analysis IDBA 1.1.1 PRE correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline 39.338015 3.051796 31595259 91127 0 0 2 0 0.0 Metagenome 7000000106 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 2, subject 15961191 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000106 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 5056674 6975 0 0 0 0 SRX023317, SRX023316 0.0 Metagenome 3300033558 *Microbiome Permanent Draft Sinkhole microbial mat communities from Lake Huron, Michigan, USA Sinkhole microbial mat from Lake Huron, Michigan, USA - SG0345 University of Michigan 3300033558 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy Yes Yes sgrim01@gmail.com Sharon Grim No Environmental Aquatic Sinkhole Freshwater Unclassified microbial mat 45.19843 -83.32721 174770305 226730 131 21 166 26 0.0 Metagenome 3300038825 *Microbiome Permanent Draft Seawater viral communities from various locations Seawater viral communities from Goseong bay, Korea - Goseong_December Korea Institute of Ocean Science and Technology (KIOST) 3300038825 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Seawater 34.912 128.2576 102124107 184300 35 4 56 13 0.0 Metagenome 3300050142 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_RHK1_5_to_SEK1 DOE Joint Genome Institute (JGI) 3300050142 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.244 377341823 514046 163 61 235 105 Unrestricted 33.94 Metagenome 3300018064 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG DOE Joint Genome Institute (JGI) 3300018064 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 4.2396 -73.2024 1876670421 4358214 1415 8 2618 16 SRX3936788 Unrestricted 4.79 Metagenome 3300008107 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA University of Michigan 3300008107 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7635 -83.3309 9.195 537737913 985182 187 68 325 103 0.0 Metagenome 3300029232 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012054-13 Beijing Genomics Institute (BGI) 3300029232 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 154514167 200217 125 0 193 0 0.0 Metagenome 3300012642 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100354 University of Pennsylvania 3300012642 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 26913222 58140 46 3 74 5 SRX756303 0.0 Metagenome 3300025280 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025280 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 39.48 7.31 319719787 664082 56 0 78 1 SRX2753822 Unrestricted 0.0 Metagenome 3300004625 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 DOE Joint Genome Institute (JGI) 3300004625 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 199299933 412493 185 5 266 8 SRX2770685, SRX2770686 Unrestricted 0.0 Metagenome 3300039552 *Microbiome Permanent Draft Glacier soil microbial communities from Mackay Glacier, Antarctica Glacier soil microbial communities from Mackay Glacier, Antarctica - MS4-1 University of Pretoria 3300039552 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Terrestrial Glacier Soil Unclassified Glacier soil -77.023 161.711 134935267 264193 55 2 114 5 0.0 Metagenome 3300034097 *Microbiome Permanent Draft Amphipod Gut Microbiome Amphipod gut microbial communities in Hirondellea gigas from Japan Trench, Pacific Ocean - J8 Beijing Novogene Bioinformatics Technology Co., Ltd 3300034097 Metagenome Analysis IDBA v. 1.1.1 released by JGI data releasing policy No Yes alm067@ucsd.edu Alvaro M. Plominsky No Host-associated Arthropoda: Crustaceans Gut Digestive system Unclassified Amphipod gut 34.21555556 142.10666667 6313991 6627 0 1 0 1 0.0 Metagenome 3300010222 *Microbiome Permanent Draft Halite endoliths microbial communities diversity study Halite microbial communities from Salar Grande, Atacama Desert, Chile, 2013 Institute for Genome Sciences, University of Maryland School of Medicine 3300010222 Metagenome Analysis metaSPAdes released per PI Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero Yes 26914534 Environmental Terrestrial Unclassified Geologic Unclassified evaporite -21.0011111 -70.07138889 144082123 183399 38 1 35 2 0.0 Metagenome 3300031878 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4 DOE Joint Genome Institute (JGI) 3300031878 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5341 -110.798 272091421 652495 154 0 216 0 SRX6411430 Unrestricted 181.75 Metagenome 7000000438 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763496533 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000438 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 35046266 65625 0 0 0 0 0.0 Metagenome 3300023238 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #868 DOE Joint Genome Institute (JGI) 3300023238 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 140908866 264353 125 5 168 17 SRX4397199 Unrestricted 17.77 Metagenome 3300011635 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00675 Weill Cornell Medical College 3300011635 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.74 -73.99 31740518 43754 9 0 24 0 SRX822642 0.0 Metagenome 3300008756 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763496533 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008756 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 71893678 113943 42 0 69 0 0.0 Metagenome 3300065602 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 798 in Beiseker, Alberta, Canada - S00JY_0523 Microbiome Insights 3300065602 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.24546833 -113.3320866 92247295 138750 39 0 82 1 0.0 Metagenome 3300026671 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN603 (SPAdes) DOE Joint Genome Institute (JGI) 3300026671 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 6609742 22643 45 4 92 7 SRX3311851 Unrestricted 0.0 Metagenome 3300008273 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 158883629 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008273 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 126591385 178060 137 0 188 0 0.0 Metagenome 3300012101 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Georgia, USA - TSGA003 MetaG DOE Joint Genome Institute (JGI) 3300012101 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 41.8102 -72.2564 61675266 110715 17 746 20 1236 SRX3539439 Unrestricted 0.0 Metagenome 3300044959 *Microbiome Permanent Draft Microbial mat bacterial communities from hot springs in Waikite Valley, Taupo Volcanic Zone, New Zealand Microbial mat bacterial communities from hot spring in Waikite Valley, New Zealand - LMW_ETR_NZ_2018_Waikite_5_2 DOE Joint Genome Institute (JGI) 3300044959 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes LMWARD@post.harvard.edu Lewis Ward No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats microbial mat -38.3276 176.3016 422828043 593392 187 3 254 3 Unrestricted 78.85 Metagenome 3300007508 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um, replicate a Georgia Genomics Facility 3300007508 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 441347427 575741 256 1 280 1 0.0 Metagenome 3300038849 *Microbiome Permanent Draft Activated sludge microbial communities from mesophilic anaerobic reactor in Belgium Activated sludge microbial communities from mesophilic anaerobic reactor in Belgium - LL_2 Ku Leuven 3300038849 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Bioreactor Unclassified Anaerobic Unclassified Activated sludge 50.9 4.7 174673431 282206 178 0 236 1 0.0 Metagenome 3300008494 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human palatine tonsils microbial communities from NIH, USA - visit 2, subject 763577454 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008494 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Tonsils Lymphatic system Palatine/Faucial Human 37101382 77437 54 0 93 1 SRX024935 0.0 Metagenome 3300069522 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_058-O-20160719-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069522 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 70020982 215079 158 8 344 14 0.0 Metagenome 3300046542 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere DOE Joint Genome Institute (JGI) 3300046542 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5876 -123.1933 540761138 847227 251 34 394 63 Unrestricted 21.16 Metagenome 3300031170 *Microbiome Permanent Draft Soil and ectomycorrhiza microbial communities from Populus trichocarpa stands in riparian zones in the Pacific Northwest, United States Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S DOE Joint Genome Institute (JGI) 3300031170 Metagenome Analysis spades v. 3.12.0 Yes Yes kpeay@stanford.edu Kabir Peay No Environmental Terrestrial Riparian zone Soil Trees stand soil 45.654 -122.839 1258729857 3625015 950 34 1683 71 SRX5650487 Unrestricted 7.81 Metagenome 3300001816 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM41, ROCA_DNA031_2.0um_3k 3300001816 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River plume Marine Plankton Marine plankton 7.2875 -53.0005 3496775 9295 7 10 18 25 0.0 Metagenome 3300056803 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - APS4_19W_T0 DOE Joint Genome Institute (JGI) 3300056803 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 1928034322 2595815 450 130 572 200 Unrestricted 19.28 Metagenome 3300024284 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK12 DOE Joint Genome Institute (JGI) 3300024284 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 234297416 596066 281 19 539 31 SRX4547516 Unrestricted 8.11 Metagenome 3300014640 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01319 Weill Cornell Medical College 3300014640 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.81 -73.9 22762224 32652 8 0 18 0 SRX823259 0.0 Metagenome 3300021358 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 DOE Joint Genome Institute (JGI) 3300021358 Metagenome Analysis spades v. 3.11.1-check Yes Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Host-associated Plants Rhizosphere Roots Unclassified rhizosphere -19.2822 -43.5936 728370397 1934321 699 42 1394 61 SRX4020304 Unrestricted 7.84 Metagenome 3300000994 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0739 DOE Joint Genome Institute (JGI) 3300000994 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -31.81 6.84 4457938 13451 20 7 31 7 SRX1982939 Unrestricted 0.0 Metagenome 3300028532 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C16 DOE Joint Genome Institute (JGI) 3300028532 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Elk feces 38.04 -122.5 179394277 310657 140 37 200 45 SRX5090776, SRX5090775 Unrestricted 0.0 Metagenome 3300056966 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Utah, USA - redbuttecreek_2019_sed_WHONDRS-S19S_0029 DOE Joint Genome Institute (JGI) 3300056966 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 40.78319 -111.80126 1848379824 4542010 1546 47 2813 82 Restricted 0.0 Metagenome 3300012313 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100739 University of Pennsylvania 3300012313 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 11105768 26068 32 2 75 7 SRX756111 0.0 Metagenome 3300044685 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - COC1D DOE Joint Genome Institute (JGI) 3300044685 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 1101896848 1904757 508 35 958 58 Unrestricted 14.98 Metagenome 3300045236 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_5_C DOE Joint Genome Institute (JGI) 3300045236 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 196015523 228206 107 1 137 1 Unrestricted 94.62 Metagenome 3300029742 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36390 Beijing Genomics Institute (BGI) 3300029742 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 216035443 262209 171 0 244 0 0.0 Metagenome 3300029360 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 045_3_9_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029360 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 253523974 315665 269 0 371 0 0.0 Metagenome 3300020021 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - H2c1 DOE Joint Genome Institute (JGI) 3300020021 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9871 -107.0011 770739456 1449103 313 33 557 40 SRX3958505, SRX3958504 Unrestricted 0.0 Metagenome 3300021519 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m DOE Joint Genome Institute (JGI) 3300021519 Metagenome Analysis spades v. 3.11.1-check Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.697 -93.722 715644017 1585880 440 27 703 58 SRX3984562 Unrestricted 14.8 Metagenome 3300034162 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A1A0.1 DOE Joint Genome Institute (JGI) 3300034162 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 140475384 460998 390 12 633 18 SRX7658967 Unrestricted 4.64 Metagenome 3300043413 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Rio Guilarte, Adjuntas, Adjuntas, Puerto Rico - guil_2019_sw_WHONDRS-S19S_0049 DOE Joint Genome Institute (JGI) 3300043413 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 18.1741 -66.7996 537311500 950714 670 241 1217 354 Unrestricted 16.73 Metagenome 3300001678 *Microbiome Permanent Draft Black smokers hydrothermal plume microbial communities from Mariner, Lau Basin, Pacific Ocean Black smokers hydrothermal plume microbial communities from Mariner, Lau Basin, Pacific Ocean -IDBA 3300001678 Metagenome Analysis Public release per request from Karthik Anantharaman (April 15, 2014) No Yes akarthik@umich.edu Karthik Anantharaman No Environmental Aquatic Hydrothermal vents Marine Black smokers Black smokers hydrothermal plume -20.180059 -176.601242 160783924 205440 43 8 70 7 0.0 Metagenome 3300000690 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 75 DOE Joint Genome Institute (JGI) 3300000690 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 7101410 21347 39 0 72 0 SRX4341376 Unrestricted 0.0 Metagenome 3300014944 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS63_3 University of Hohenheim 3300014944 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 99713756 154285 58 0 84 0 0.0 Metagenome 3300046784 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 soil DOE Joint Genome Institute (JGI) 3300046784 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.588172 -123.19295 6.95 525438867 944746 213 3 450 7 Unrestricted 17.28 Metagenome 3300001333 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-PF)- 6 month illumina University of Tennessee 3300001333 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 147393140 550161 367 10 689 14 0.0 Metagenome 3300027475 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06.2A5a-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300027475 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 22492033 76196 95 2 153 5 SRX2576243 Unrestricted 0.0 Metagenome 3300002526 *Microbiome Permanent Draft Marine microbial communities from oxygen minimum zone in the mesopelagic equatorial Pacific Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_550m DOE Joint Genome Institute (JGI) 3300002526 Metagenome Analysis Yes Yes cdupont@jcvi.org Chris Dupont, Chris L. Dupont No Environmental Aquatic Oceanic Marine Unclassified Marine 8.0 -156.0 137359742 296942 185 12 310 18 SRX1991076 Unrestricted 0.0 Metagenome 3300037344 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Williams Lake #987 DOE Joint Genome Institute (JGI) 3300037344 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4782 78.1627 339203813 686792 316 114 498 172 SRX9378916 Unrestricted 12.94 Metagenome 3300045027 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Plains ecozone, Canada - Lake 04-580 Genome Quebec 3300045027 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 67.46993 -134.72108 1167084395 2815975 518 96 873 187 0.0 Metagenome 3300070795 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountains, Colorado, USA - RMNP_043-O-20170807-COMP-DNA1 3300070795 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 7821925 24824 35 1 64 5 0.0 Metagenome 3300007791 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159268001 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007791 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 173851277 246990 138 0 167 0 0.0 Metagenome 3300014323 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailB_D1 DOE Joint Genome Institute (JGI) 3300014323 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.107536 -121.649704 391579058 964323 455 12 872 28 SRX7188926 Unrestricted 0.0 Metagenome 3300038578 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark - 1616-PRJ1066-RA-Sewage-8_S15 Technical University of Denmark 3300038578 Metagenome Analysis Yes Yes No Engineered Wastewater Unclassified Sewage Unclassified Sewage 55.608534 12.450516 23284299 49330 133 0 196 1 ERX1596351 0.0 Metagenome 3300067231 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210608_12_01 DOE Joint Genome Institute (JGI) 3300067231 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 340510074 552034 201 98 283 129 Unrestricted 0.0 Metagenome 3300004107 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/8/14 3 um filter (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300004107 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu, jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield, Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 509932544 1204448 934 18 1512 39 SRX2770548 Unrestricted 0.0 Metagenome 3300054080 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_10_10 re-annotation DOE Joint Genome Institute (JGI) 3300054080 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 198020906 456370 190 16 363 30 SRX3003284 0.0 Metagenome 3300014064 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00213 Weill Cornell Medical College 3300014064 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.98 14863353 19144 7 0 12 0 SRX822192 0.0 Metagenome 3300037203 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 711 P-3-S DOE Joint Genome Institute (JGI) 3300037203 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0473 607167187 1279885 231 43 435 60 SRX8145675 Unrestricted 7.23 Metagenome 3300012836 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched chicken feces microbial communities from UW Madison campus, WI, USA - DID2874_E49_Stillage MG DOE Joint Genome Institute (JGI) 3300012836 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Birds Large intestine Digestive system Fecal feces 43.073 -89.4011 107960405 130444 80 51 135 118 SRX3565014 Unrestricted 0.0 Metagenome 3300010210 *Microbiome Permanent Draft Phototrophic microbial communities Intertidal zone phototrophic microbial communities from Little Sippewissett Salt Marsh, Woods Hole, MA - SCD17c Marine Biological Laboratory 3300010210 Metagenome Analysis CLC released per JGI data release policy No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Intertidal zone Marine Salt marsh salt marsh 41.5758508 -70.635807 81074672 84507 24 0 41 0 0.0 Metagenome 3300029584 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35583 Beijing Genomics Institute (BGI) 3300029584 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 211055018 277432 172 3 291 3 0.0 Metagenome 3300049794 *Microbiome Permanent Draft Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA - 1_d_sep_JRB_CZO DOE Joint Genome Institute (JGI) 3300049794 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dawsonfairbanks@email.arizona.edu Dawson Fairbanks No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.88243 -106.5341008 1177219476 1908604 341 19 599 25 Unrestricted 14.65 Metagenome 3300003776 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus makropetalos BAHAMAS.1 DOE Joint Genome Institute (JGI) 3300003776 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 439237721 980620 8 1 17 6 SRX3340579 Unrestricted 0.0 Metagenome 3300032250 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime Ecozone, Canada - Lake 07-057 Genome Quebec 3300032250 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.934091 -67.761037 733149514 1403648 437 97 671 203 0.0 Metagenome 3300064902 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 687 in Warspite, Alberta, Canada - S00JY_0806 Microbiome Insights 3300064902 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 54.0558482 -112.3659904 122503150 181608 62 0 120 3 0.0 Metagenome 3300019696 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BRC_3-4_MG DOE Joint Genome Institute (JGI) 3300019696 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 94655029 236959 193 13 394 32 SRX3983591 Unrestricted 3.41 Metagenome 3300005205 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D2 DOE Joint Genome Institute (JGI) 3300005205 Metagenome Analysis Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.000706 -121.624306 458798746 1485717 687 6 1509 10 SRX7144829 Unrestricted 0.0 Metagenome 3300036446 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Stenomitos rutilans HA7619-LM2 and co-occurring heterotrophs from cave wall surface from Waikapalae cave, Hawaii, United States - 20190126_53 DOE Joint Genome Institute (JGI) 3300036446 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Cave Deep subsurface Wall surface Cave wall surface 22.2202 -159.5794 97448996 114389 37 0 32 1 SRX8849857 Unrestricted 118.46 Metagenome 3300011792 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00760 Weill Cornell Medical College 3300011792 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.73 -73.98 19813346 26221 12 0 23 0 SRX822726 0.0 Metagenome 3300008625 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um Georgia Genomics Facility 3300008625 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 688503037 882054 339 1 425 1 0.0 Metagenome 3300006432 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T18 (2) (BES), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006432 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 38053253 65755 67 0 72 0 0.0 Metagenome 3300035001 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Nodosilinea sp. WJT8-NPBG4 and co-occurring heterotrophs from soil from Pinto Basin, Colorado Desert, California, United States - 20181029_32A DOE Joint Genome Institute (JGI) 3300035001 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Soil crust Soil Biological Soil 33.893 -115.798 32801540 34454 19 1 14 1 SRX8237552 Unrestricted 331.02 Metagenome 3300004756 *Microbiome Permanent Draft Metagenomics analysis of sediments collected from Formosa Ridge Marine sediment microbial communities from Formosa Ridge, offshore Taiwan - G2-1 Beijing Genomics Institute (BGI) 3300004756 Metagenome Analysis SOAPdenovo (version 1.05) released per JGI data release policy No Yes mclai01@gmail.com Mei-Chin Lai No Environmental Aquatic Cold seeps Marine Sediment Marine Sediment 22.10811667 119.29126667 3981202 8507 7 0 10 0 0.0 Metagenome 3300000219 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2010 P16 1000m DOE Joint Genome Institute (JGI) 3300000219 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 49.283333 -134.666667 168607881 384376 179 14 360 13 Unrestricted 0.0 Metagenome 3300022454 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1BM3 JM78 AGRF 3300022454 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 50287042 89987 40 0 61 0 0.0 Metagenome 3300022829 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1572 DOE Joint Genome Institute (JGI) 3300022829 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 78301103 153766 66 26 80 39 SRX4397690 Unrestricted 25.64 Metagenome 3300031525 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3 DOE Joint Genome Institute (JGI) 3300031525 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3532 19.0477 7261182966 14162038 1865 187 2999 304 SRX5358061 Unrestricted 11.36 Metagenome 3300049070 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - F7_A_BS (version 2) DOE Joint Genome Institute (JGI) 3300049070 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 558986312 1159274 617 8 1317 17 Unrestricted 0.0 Metagenome 3300054104 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin02_60_metaG re-annotation DOE Joint Genome Institute (JGI) 3300054104 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1001503944 1731873 322 0 524 0 SRX3291957 0.0 Metagenome 3300025452 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI073_LV_150m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025452 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 212354084 398682 148 5 211 14 Unrestricted 0.0 Metagenome 3300070846 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_042-O-20190806-COMP-DNA1 3300070846 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 18042053 56455 45 3 77 3 0.0 Metagenome 3300005925 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 1 Metagenome Rauer1 DOE Joint Genome Institute (JGI) 3300005925 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli, Rick Cavicchioli Yes 31253704 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.8136 77.9341 32211054 56551 48 0 130 0 SRX2747269 Unrestricted 0.0 Metagenome 3300000884 *Microbiome Permanent Draft Cold seep sediment microbial communities from Nyegga field, Norway Cold seep sediment microbial communities from the Nyegga Seep, Norway University of Uppsala 3300000884 Metagenome Analysis Newbler v. 2.3 Released because it is published: http://www.ncbi.nlm.nih.gov/nuccore/AHKK00000000 No Yes ida.steen@bio.uib.no Ida Steen Yes 22404914 Environmental Aquatic Cold seeps Marine Sediment Cold seep sediment 64.799 5.279 0 0 0 0 0 0 0.0 Metagenome 3300048083 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Woodchip biofilm microbial communities from field WBR in Freeville, NY, USA - field_wbr_p3 DOE Joint Genome Institute (JGI) 3300048083 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.516658 -76.333335 809160661 1768961 598 9 973 13 Unrestricted 8.24 Metagenome 3300011141 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00782 Weill Cornell Medical College 3300011141 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.78 -73.95 17048269 35164 11 0 24 0 SRX822748 0.0 Metagenome 3300011867 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00475 Weill Cornell Medical College 3300011867 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.81 -73.92 52443950 71731 20 3 25 8 SRX822444 0.0 Metagenome 3300044752 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 385-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044752 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.992 -107.0644 480855335 1259240 356 21 666 42 Unrestricted 6.86 Metagenome 3300028505 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 10 Selected contigs with viral hallmark genes 2 Autonomous University of Barcelona 3300028505 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 276922 461 0 0 0 0 0.0 Metagenome 3300020317 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000767 (ERX555998-ERR599027) CEA Genoscope 3300020317 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -47.1208 -57.8265 241429487 537516 196 25 260 49 0.0 Metagenome 3300038594 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from Daisy Lake, Ontario, Canada Freshwater lake sediment microbial communities from Daisy Lake, Ontario, Canada - B5 University of Cambridge 3300038594 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 46.27199 -80.52479 6803238 15753 16 0 26 0 0.0 Metagenome 3300037408 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Sediment microbial communities from wetlands near Prado wetlands, California, USA - CSM_Prado_Oct18_PM_2.5z2 DOE Joint Genome Institute (JGI) 3300037408 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 1854673592 2955363 592 20 921 43 SRX9164574 Unrestricted 16.77 Metagenome 3300043265 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from Nevada, United States - Crystal Pool (CP_S2) (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043265 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified Desert spring 36.4202 -116.323 7.4 411024117 608907 198 2 304 3 SRX9167301 Unrestricted 100.13 Metagenome 3300043218 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_3000m_C5_15cm20cm (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043218 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.799 -121.0256 167837421 273252 125 0 221 0 SRX8382851 Unrestricted 42.18 Metagenome 3300029087 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 103_12M Beijing Genomics Institute (BGI) 3300029087 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 70024170 95789 58 0 82 0 ERX490924 0.0 Metagenome 3300001694 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A1-12 DOE Joint Genome Institute (JGI) 3300001694 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 142320 513 15 3 30 5 SRX1990519 Unrestricted 0.0 Metagenome 3300071075 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_002-M-20180222-COMP-DNA1 3300071075 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 11464899 36247 86 12 187 19 0.0 Metagenome 3300043772 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Jul2014-rr0246 DOE Joint Genome Institute (JGI) 3300043772 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1588824198 2385748 498 74 646 104 Unrestricted 20.24 Metagenome 3300014589 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01354 Weill Cornell Medical College 3300014589 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.85 -73.82 18362426 26577 12 0 16 0 SRX823294 0.0 Metagenome 3300059428 *Microbiome Permanent Draft Sorghum rhizosphere and bulk soil microbial communities from University of Arizona Maricopa Agricultural Center, AZ, USA Soil microbial communities from sorghum plot in University of Arizona Maricopa Agricultural Center, AZ, USA - plot6_0-15_20210708 DOE Joint Genome Institute (JGI) 3300059428 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Agricultural land Soil Unclassified Soil 33.07735 -111.974819 405364166 1051542 581 20 1131 39 Unrestricted 7.37 Metagenome 3300045524 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Yazoo River, Mississippi, USA - NASQAN2012_107 DOE Joint Genome Institute (JGI) 3300045524 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 32.4441 -90.9141 61849871 180949 151 27 315 52 Unrestricted 0.0 Metagenome 3300001880 *Microbiome Permanent Draft Termite hindgut microbial communities from the Max Planck Institute, Bremen, Germany, analyzing fibers in the hindgut lumen Termite hindgut microbial communities from the Max Planck Institute, Bremen, Germany, analyzing fibers in the hindgut lumen - ASSEMBLED Fiber-Associated Metagenome 3300001880 Metagenome Analysis released by JGI data releasing policy No Yes karen.rossmassler@gmail.com Karen Rossmassler No Host-associated Arthropoda: Insects Hindgut Digestive system Unclassified Termite hindgut 53.109695 8.847543 369323497 1176588 694 2 1157 4 0.0 Metagenome 3300051221 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf microbial communities from Olympic Peninsula, Washington, USA - D0_RHK2_2 DOE Joint Genome Institute (JGI) 3300051221 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Alder tree leaf 48.153 -124.211 294835844 357272 68 45 121 82 Unrestricted 55.52 Metagenome 3300029069 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 130_4M Beijing Genomics Institute (BGI) 3300029069 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 28167456 29276 15 0 29 0 ERX490945 0.0 Metagenome 3300042522 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06Jul2018-rr0662 DOE Joint Genome Institute (JGI) 3300042522 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 749957131 1184230 316 96 419 151 Unrestricted 17.65 Metagenome 3300053111 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere DOE Joint Genome Institute (JGI) 3300053111 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121096 -123.270783 481830683 840714 218 109 323 157 Unrestricted 0.0 Metagenome 3300014567 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01168 Weill Cornell Medical College 3300014567 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.67 -73.89 14312486 16294 6 0 11 0 SRX823123 0.0 Metagenome 3300047334 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Frasne, France - Sphagnum fallax 7C_SF_FR DOE Joint Genome Institute (JGI) 3300047334 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 1995728797 3611091 833 146 1245 230 SRX14787478 Unrestricted 9.4 Metagenome 3300017447 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_03OCT2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017447 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 257839206 515116 238 172 372 336 SRX3927217 Unrestricted 6.47 Metagenome 3300013124 *Microbiome Finished Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India - point GR3 91 Life Technologies 3300013124 Metagenome Analysis MetaVelvet v1.2.01 released by JGI data releasing policy No Yes sarkar.jayeeta12@gmail.com, psar@hijli.iitkgp.ernet.in Pinaki Sar No Engineered Built environment Petroleum sludge Oil refinery Unclassified petroleum sludge 26.18471 91.80725 110364391 317607 270 1 434 1 SRX2510723 0.0 Metagenome 3300029949 *Microbiome Permanent Draft Crustal fluid microbial communities from North Pond, Mid-Atlantic Ridge, Atlantic Ocean 2014 cruise Crustal fluid microbial communities from North Pond, Mid-Atlantic Ridge, Atlantic Ocean - 1383CS 2014 kmer 100 Marine Biological Laboratory 3300029949 Metagenome Analysis IDBA-UD v. 1.1.2 released by JGI data releasing policy No Yes lmseyler@gmail.com Lauren Seyler No Environmental Aquatic Oceanic Marine Crustal Fluids Oceanic crustal fluids 22.75 -46.083 18682803 28510 20 0 30 0 0.0 Metagenome 3300049212 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - L4_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049212 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 392856056 890740 572 16 1043 37 Unrestricted 0.0 Metagenome 3300003247 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_03_M0_10 DOE Joint Genome Institute (JGI) 3300003247 Metagenome Analysis Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 66680935 155141 143 23 260 25 SRX2570688 Unrestricted 0.0 Metagenome 3300034416 *Microbiome Permanent Draft Metagenomes of anaerobic enrichment cultures that dechlorinate hexachlorocyclohexane isomers Lab-enriched soil microbial communities from a contaminated agricultural site, Guadeloupe, France - GT4SUHCH MSP Beijing Genomics Institute (BGI), Genome Quebec 3300034416 Metagenome Analysis spades v. 3.12.0 210459 Yes Yes elizabeth.edwards@utoronto.ca; camillaln@gmail.com Elizabeth A. Edwards; Camilla Nesb? No Environmental Terrestrial Unclassified Soil Contaminated soil 16.249 -61.565 136907277 210376 56 3 94 6 0.0 Metagenome 3300011889 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00696 Weill Cornell Medical College 3300011889 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.83 -73.94 55040253 79959 33 0 46 0 SRX822663 0.0 Metagenome 3300007142 *Microbiome Permanent Draft Cephalotes ants gut microbiomes Ant gut microbial communities from Cephalotes grandinosus, Brazil Harvard University 3300007142 Metagenome Analysis IDBA-UD released by Yi Hu Yes Yes pl356@drexel.edu, yihu.bnu@gmail.com Piotr Lukasik, Yi Hu No Host-associated Arthropoda: Insects Gut Digestive system Unclassified ant gut -19.11 -48.24 155706851 311952 42 1 69 3 0.0 Metagenome 3300026097 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026097 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Pond water 37.4958 -122.1331 122361967 242026 17 2 25 6 SRX2523665 Unrestricted 0.0 Metagenome 3300011214 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00478 Weill Cornell Medical College 3300011214 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.81 -73.91 33710021 52829 16 0 24 0 SRX822447 0.0 Metagenome 3300037136 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPON1-2-M DOE Joint Genome Institute (JGI) 3300037136 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3569 19.0502 780526371 1509641 309 15 491 26 SRX8862041 Unrestricted 9.68 Metagenome 3300049778 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I22_A_5_control DOE Joint Genome Institute (JGI) 3300049778 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 97368861 228785 223 27 437 35 Unrestricted 14.4 Metagenome 3300002013 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot9-1 3300002013 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 7699682 44398 133 6 239 9 0.0 Metagenome 7000000743 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763759525 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000743 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 16807331 31495 0 0 0 0 0.0 Metagenome 3300064935 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 740 in Bashaw, Alberta, Canada - S00JY_0154 Microbiome Insights 3300064935 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.40477497 -112.5728765 2825083 4436 9 0 23 0 0.0 Metagenome 3300013503 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A23_5cm_12M University of Tennessee 3300013503 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 432187859 1253492 146 2 340 1 SRX710606 0.0 Metagenome 3300026849 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 46 (SPAdes) DOE Joint Genome Institute (JGI) 3300026849 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 53346278 126046 61 1 126 2 SRX4340968 Unrestricted 0.0 Metagenome 2189573031 *Microbiome Permanent Draft Apis mellifera gut microbial communities from the Carl Hayden Bee Research Center, Tuscon, Arizona, USA Gamma-1 phylotype from Apis mellifera gut collected at the Carl Hayden Bee Research Center, Tucson, AZ. Yale University 2189573031 Metagenome Analysis Velvet v. 1.1.04 released per JGI data release policy No Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Hindgut Digestive system Unclassified Apis mellifera gut 39.0042816 -77.1012173 15778121 18477 0 0 0 0 0.0 Metagenome 3300035246 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Soil microbial communities from Oregon, United States - Field_Oregon_1 DOE Joint Genome Institute (JGI) 3300035246 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Environmental Terrestrial Agricultural land Soil Bulk soil soil 46.1125 -122.987 659064767 1691225 536 19 980 21 SRX8290695 Unrestricted 6.77 Metagenome 3300044512 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Estuarine water microbial communities from San Francisco Bay, California, United States - Oct18_SB_2_27D DOE Joint Genome Institute (JGI) 3300044512 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 37.6183 -122.2916 426193065 755846 180 84 268 133 Unrestricted 127.7 Metagenome 3300005232 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies JGI facility at Oak Ridge National Laboratory 3300005232 Metagenome Analysis default JGI released per JGI data release policy No Yes grace.pold@gmail.com, grace.pold@slu.se Grace Pold No Environmental Terrestrial Loam Soil Forest soil Soil 42.550409 -72.180244 2765620200 17805264 4338 310 7308 764 0.0 Metagenome 3300008478 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 763982056 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008478 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 102525982 127255 72 0 117 0 0.0 Metagenome 3300045103 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_7_F DOE Joint Genome Institute (JGI) 3300045103 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 175203566 226928 99 1 107 2 Unrestricted 99.6 Metagenome 3300023040 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung G2 DOE Joint Genome Institute (JGI) 3300023040 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Elk feces 38.04 -122.5 85933037 210837 306 5 543 4 SRX4415398 Unrestricted 7.45 Metagenome 3300029191 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011686-142 Beijing Genomics Institute (BGI) 3300029191 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 102659111 125418 75 0 108 0 0.0 Metagenome 3300026252 *Microbiome Permanent Draft Anaerobic biogas reactor microbial communites from Washington, USA Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_A C12 SIP DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026252 Metagenome Analysis spades v. 3.11.1 Yes Yes dacb@uw.edu David Beck Yes 28895946 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic biogas reactor 47.6525 -122.3049 465378870 803647 345 1 512 3 SRX2339138 Unrestricted 0.0 Metagenome 2044078017 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Singapore and Univ of Illinois at Urbana, that are terephthalate-degrading Wastewater bioreactor microbial communities from Singapore - Sample 373 DOE Joint Genome Institute (JGI) 2044078017 Metagenome Analysis not assembled released per Simon -- IMGSUPP2949 No Yes sgtringe@lbl.gov Susannah Tringe Yes 20686509 Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater bioreactor 1.29973 103.771791 39519914 102638 66 0 109 0 0.0 Metagenome 3300004023 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Bullhead_CordA_D2 DOE Joint Genome Institute (JGI) 3300004023 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.003361 -122.468277 704928689 2196668 767 2 1648 15 SRX7142154 Unrestricted 0.0 Metagenome 3300010286 *Microbiome Permanent Draft Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 3_6_20_6_A3 metaG DOE Joint Genome Institute (JGI) 3300010286 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes Steve.Brown@lanzatech.com Steven Brown Yes 30202438 Engineered Bioreactor Anaerobic Semi-continuous Digestate Switchgrass degrading 43.726 -72.1429 288715018 484913 826 2 1109 5 SRX3290026 Unrestricted 0.0 Metagenome 3300037801 *Microbiome Permanent Draft Seawater and sediment microbial communities from various locations Seawater microbial communities from eastern tropical North Pacific Ocean - AMALJGI-DNA-17 DOE Joint Genome Institute (JGI) 3300037801 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bbw@princeton.edu Bess Ward No Environmental Aquatic Oceanic Marine Unclassified seawater 18.0 -102.0 319637137 754980 383 158 670 254 SRX9401060 Unrestricted 12.32 Metagenome 3300006290 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 550534656 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006290 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 40759806 76887 46 0 76 0 0.0 Metagenome 3300011999 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A28_65cm_6M University of Tennessee 3300011999 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 260402110 611905 81 2 163 2 SRX710593 0.0 Metagenome 3300025573 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqC_D1 (SPAdes) DOE Joint Genome Institute (JGI) 3300025573 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.197227 -122.010124 253595396 517938 270 3 456 4 SRX7142752 Unrestricted 0.0 Metagenome 3300019289 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Extremophilic microbial mat communities from Yellowstone National Park, Wyoming, USA - OCT_B_HostDNA DOE Joint Genome Institute (JGI) 3300019289 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jim.fredrickson@pnnl.gov; binskeep@montana.edu Jim Fredrickson; William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 44.534 -110.7978 371976741 1282857 528 3 929 14 SRX3940814 Unrestricted 60.59 Metagenome 3300006619 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-4B DOE Joint Genome Institute (JGI) 3300006619 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.299 -156.61 125601434 455434 160 7 303 14 SRX2910105 Unrestricted 0.0 Metagenome 3300041812 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - C_31_wk_4 DOE Joint Genome Institute (JGI) 3300041812 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9617 -107.031 119091072 368445 229 15 433 21 SRX14808529 Unrestricted 7.18 Metagenome 3300049379 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - 12-3 DOE Joint Genome Institute (JGI) 3300049379 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 316112498 843986 386 9 713 18 Unrestricted 7.43 Metagenome 3300027628 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - Mg.Sf.rz (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027628 Metagenome Analysis spades v. 3.11.1 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.7658 -100.163 420874915 851367 574 38 688 64 SRX2124705 Unrestricted 0.0 Metagenome 3300001425 *Microbiome Permanent Draft Goat rumen microbial communities from Langston University, Oklahoma, USA Goat rumen bacterial communities from Langston, Oklahoma, USA - velvet Cornell University 3300001425 Metagenome Analysis released per Rekha No Yes zsuping@tnstate.edu Suping Zhou No Host-associated Mammals Stomach Digestive system Rumen Goat rumen 35.453976 -97.515884 1986802579 10291528 2261 135 5291 138 0.0 Metagenome 3300048839 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Sediment microbial communities from brackish wetlands in San Jose, California, USA - ROC14_1 DOE Joint Genome Institute (JGI) 3300048839 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Intertidal zone Marine Salt marsh sediment Sediment 37.427598 -121.938678 2161808563 3161669 865 70 1332 96 Unrestricted 19.48 Metagenome 3300001990 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 DOE Joint Genome Institute (JGI) 3300001990 Metagenome Analysis Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn rhizosphere 42.3948 -85.3738 591915408 1530919 987 77 1893 141 SRX1990927 Unrestricted 0.0 Metagenome 3300039028 *Microbiome Permanent Draft Lab enriched sediment microbial communities from Lake Superior, Michigan and Burr Oak Reservoir, Ohio, USA Lab enriched sediment microbial communities from Lake Superior, Michigan, USA - Sup1 Miami University 3300039028 Metagenome Analysis MetaSPAdes v. 3.13 released by JGI data releasing policy No Yes bollmaa@miamioh.edu Annette Bollmann No Engineered Lab enrichment Aerobic media Defined media Unclassified Sediment 46.846944 -90.175833 55741582 57973 6 0 8 0 0.0 Metagenome 3300040595 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Desert Southwest, AZ, USA - SRER_052-M-20170815-COMP-DNA1 Battelle Memorial Institute 3300040595 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.91068 -110.83549 1772977 5586 23 0 37 0 0.0 Metagenome 3300000978 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP1140 DOE Joint Genome Institute (JGI) 3300000978 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -29.65 92.99 1166769 3574 19 11 31 24 SRX1982626 Unrestricted 0.0 Metagenome 3300002561 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm DOE Joint Genome Institute (JGI) 3300002561 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.718176 -123.652732 507792538 1099704 87 7 364 18 SRX1991101 Unrestricted 0.0 Metagenome 3300021952 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG DOE Joint Genome Institute (JGI) 3300021952 Metagenome Analysis spades v. 3.11.1-check Yes Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9266 -83.4611 151571016 338309 148 37 214 67 SRX4036846 Unrestricted 14.69 Metagenome 3300026181 *Microbiome Permanent Draft Anaerobic reactors microbiome study Activated sludge microbial communities from lab. scaled anaerobic digester in Belvaux, Luxembourg - ACS0-63 University of Luxembourg 3300026181 Metagenome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 49.506216 5.943617 406190641 478455 82 2 218 4 0.0 Metagenome 3300049033 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - B14_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049033 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 464169757 1101699 414 14 774 16 Unrestricted 0.0 Metagenome 3300006945 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC16 2012 metaG DOE Joint Genome Institute (JGI) 3300006945 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jkjarett@lbl.gov, rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca; jkjarett@lbl.gov Jessica Jarett, Ramunas Stepanauskas; Peter Dunfield; Jessica Jarett No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 49.9543 -116.5155 8.15 338563328 495648 319 0 422 0 SRX2839021 Unrestricted 0.0 Metagenome 3300013818 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01241 Weill Cornell Medical College 3300013818 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.62 -73.97 15205778 23041 11 0 15 0 SRX823196 0.0 Metagenome 3300027029 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF045 (SPAdes) DOE Joint Genome Institute (JGI) 3300027029 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 89968956 246200 64 3 106 2 SRX2014397 Unrestricted 0.0 Metagenome 7000000020 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2 of subject 158802708 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000020 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 2529375 6145 0 0 0 0 0.0 Metagenome 3300036450 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C6-7C DOE Joint Genome Institute (JGI) 3300036450 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 160345171 486514 318 9 570 15 SRX8806652 Unrestricted 4.97 Metagenome 3300044514 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_264 DOE Joint Genome Institute (JGI) 3300044514 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 922349902 2257678 641 2 1272 5 Unrestricted 7.91 Metagenome 3300032246 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime Ecozone, Canada - Lake 07-032 Genome Quebec 3300032246 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.191192 -66.103933 710649380 1418439 436 63 783 137 0.0 Metagenome 3300006018 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom. Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel4S_1600h metaG DOE Joint Genome Institute (JGI) 3300006018 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov, rmmckay@bgsu.edu Susannah Tringe, Robert M. McKay No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.69957 -83.2941 129752729 460635 144 37 283 78 Unrestricted 0.0 Metagenome 3300014749 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 567_12M Beijing Genomics Institute (BGI) 3300014749 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 68577753 84785 41 1 48 0 ERX491215 0.0 Metagenome 3300028037 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Soil microbial communities from Maridalen valley, Oslo, Norway - NSE1 DOE Joint Genome Institute (JGI) 3300028037 Metagenome Analysis spades v. 3.11.1 Yes Yes baldrian@biomed.cas.cz; kostelecke.uzeniny@seznam.cz Petr Baldrian; Tomas Vetrovsky No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 59.9979 10.7895 66480927 163983 97 18 176 37 SRX5271698 Unrestricted 7.33 Metagenome 3300026254 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV86 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026254 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 435686385 909101 462 4 727 12 SRX2781859 Unrestricted 0.0 Metagenome 3300070850 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Treehaven, Wisconsin, USA - TREE_001-M-20200708-COMP-DNA1 3300070850 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 35576558 110941 89 2 152 8 0.0 Metagenome 3300000153 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 135m DOE Joint Genome Institute (JGI) 3300000153 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.35 -123.29 161992569 328376 120 7 222 9 Unrestricted 0.0 Metagenome 3300035426 *Microbiome Permanent Draft Mouse fecal microbial communities from various locations Fecal microbial communities from mouse strain C57/BL6 in Denmark - 1B-dyr11-07 Beijing Genomics Institute (BGI) 3300035426 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 55.676097 12.568337 30506250 51884 53 0 108 0 0.0 Metagenome 3300006065 *Microbiome Permanent Draft Mini-Metagenome - Microbial communities from the Yellowstone National Park Hotspring Microbial Communities from Lower Geyser Basin, Spring Unknown 43 (Mound Spring), Yellowstone National Park, Wyoming, USA - Sample 3, Mini-Metagenomics Stanford University 3300006065 Metagenome Analysis spades 3.0 released by Brian Yu No Yes brianyu@stanford.edu, brian.yu@czbiohub.or Brian Yu Yes 28678007 Environmental Aquatic Near-boiling (>90C) Thermal springs Alkaline hotspring 44.564833 -110.86325 107195016 180698 81 0 132 2 0.0 Metagenome 3300013865 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In5p-11 gowning area SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300013865 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1 -118.1 42842632 67681 28 11 46 18 Unrestricted 0.0 Metagenome 3300040996 *Microbiome Permanent Draft Coastal seawater microbial communities from Massachusetts, USA Coastal seawater microbial communities from Nahant, Massachusetts, USA - M2.T24 Massachusetts Institute of Technology 3300040996 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Coastal seawater 42.0 -70.0 7356450 12111 43 0 57 0 0.0 Metagenome 2124908015 *Microbiome Permanent Draft Human tongue microbial communities from Los Alamos National Lab, USA Tongue_dorsum_contig300 Los Alamos National Laboratory 2124908015 Metagenome Analysis released per JGI data release policy No Yes BCM No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum Human tongue 29.774 -95.361032 406291643 1188492 2958 2 4959 0 0.0 Metagenome 3300008381 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 763840445 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008381 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 11622159 21854 13 0 18 0 SRX024980 0.0 Metagenome 3300049999 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume viral communities from Gulf of California, Mexico - CTD-FK190211-03-2004m-0.03 v DOE Joint Genome Institute (JGI) 3300049999 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 26.01663 -111.00697 121158590 291788 40 13 55 17 Restricted 107.19 Metagenome 3300022573 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 1 Selected contigs with viral hallmark genes Autonomous University of Barcelona 3300022573 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 1702328 2505 0 0 0 0 0.0 Metagenome 3300042311 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2017-rr0471 DOE Joint Genome Institute (JGI) 3300042311 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 845515166 1263506 287 54 401 75 Unrestricted 21.45 Metagenome 3300053695 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_CO_0C1D DOE Joint Genome Institute (JGI) 3300053695 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0683 10.4331 485369198 1284474 386 33 846 60 Unrestricted 0.0 Metagenome 3300011379 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00515 Weill Cornell Medical College 3300011379 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.9 -73.85 15895741 19650 5 0 10 0 SRX822484 0.0 Metagenome 3300051848 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_9B2_100318_1536 DOE Joint Genome Institute (JGI) 3300051848 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 1449493079 2332132 501 286 768 356 Unrestricted 26.29 Metagenome 3300046047 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_USB_105 DOE Joint Genome Institute (JGI) 3300046047 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 179009763 273949 190 3 257 7 SRX12656339 Unrestricted 71.56 Metagenome 3300041814 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - C_35_wk_4 DOE Joint Genome Institute (JGI) 3300041814 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9936 -107.068 271085505 717151 266 16 485 42 SRX14809569 Unrestricted 7.12 Metagenome 3300005561 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_09_20cm DOE Joint Genome Institute (JGI) 3300005561 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2901513585 8379324 2870 68 4820 135 SRX2728047 Unrestricted 0.0 Metagenome 3300001370 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 25SEP2008 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300001370 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.099444 -89.404444 4006525 10184 12 1 20 1 SRX3310965 Unrestricted 0.0 Metagenome 3300046655 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_171018.NP2 DOE Joint Genome Institute (JGI) 3300046655 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 866014436 1801727 541 129 812 237 Unrestricted 10.94 Metagenome 3300048496 *Microbiome Permanent Draft Marine and freshwater sediment microbial communities from various locations Marine sediment microbial communities from Mediterranean Sea - Mediterranean_Core_1_8-12_cm DOE Joint Genome Institute (JGI) 3300048496 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes smtechtm@mtu.edu Stephen Techtmann No Environmental Aquatic Sediment Marine Unclassified Marine sediment 31.971 30.142 405871254 1252286 531 1 854 1 Unrestricted 7.18 Metagenome 3300000398 *Microbiome Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypoxic/sulfidic aquatic microbial communities from Cistern Spring, Yellowstone National Park, USA v1 DOE Joint Genome Institute (JGI) 3300000398 Metagenome Analysis released based on JGI ITS Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hypoxic/sulfidic aquatic 44.7230812 -110.7040247 4.4 47958071 99270 30 2 44 0 Unrestricted 0.0 Metagenome 3300020406 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000886 (ERX555926-ERR599024) CEA Genoscope 3300020406 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -21.1556 -104.8217 949151937 2423051 474 53 798 106 0.0 Metagenome 3300044754 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 398-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044754 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.989 -107.0631 531414654 1340801 381 38 723 49 Unrestricted 6.97 Metagenome 3300038592 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from Daisy Lake, Ontario, Canada Freshwater lake sediment microbial communities from Daisy Lake, Ontario, Canada - B11 University of Cambridge 3300038592 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 46.27199 -80.52479 36723233 83755 53 5 92 6 0.0 Metagenome 3300014656 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PC_MetaG DOE Joint Genome Institute (JGI) 3300014656 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 57.4344 16.66 1680321336 3571302 1334 10 1998 19 SRX3602289 Unrestricted 12.28 Metagenome 3300049141 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S53_A_D45 hydrophobic DOE Joint Genome Institute (JGI) 3300049141 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 293072075 460585 166 0 235 0 Unrestricted 24.7 Metagenome 3300043090 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - Beaver4Rectum1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043090 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Rectum rectum 49.18 -122.54 260907720 473052 464 8 691 15 SRX8346146 Unrestricted 43.8 Metagenome 3300029668 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36119 Beijing Genomics Institute (BGI) 3300029668 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 146982308 187093 150 0 204 0 0.0 Metagenome 3300070215 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_042-M-20200706-COMP-DNA1 3300070215 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 24218044 69861 85 16 142 14 0.0 Metagenome 3300037068 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 DOE Joint Genome Institute (JGI) 3300037068 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1125 -122.987 3219393929 7277342 1589 134 2680 258 SRX8288912 Unrestricted 8.14 Metagenome 7000000583 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160643649 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000583 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 93707176 162234 0 0 0 0 0.0 Metagenome 3300013411 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100179 University of Pennsylvania 3300013411 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8816067 18785 3 2 8 7 SRX756354 0.0 Metagenome 3300069236 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Mid-Atlantic, VA, USA - SCBI_002-M-20140915-COMP-DNA1 re-annotation Argonne National Laboratory 3300069236 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89292 -78.1395 26112407 79701 37 8 92 18 ERX2134025 0.0 Metagenome 3300029615 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36212 Beijing Genomics Institute (BGI) 3300029615 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 229786016 283187 191 0 273 0 0.0 Metagenome 3300043774 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jun2007D7-rr0328 DOE Joint Genome Institute (JGI) 3300043774 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1074806189 1601899 348 123 515 165 Unrestricted 23.21 Metagenome 3300009796 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S2_0_10 DOE Joint Genome Institute (JGI) 3300009796 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228379 -119.2717467 38093636 92538 152 18 328 27 SRX2523282 Unrestricted 0.0 Metagenome 3300028863 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_1 DOE Joint Genome Institute (JGI) 3300028863 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 668260898 1513146 448 120 686 211 SRX5355861 Unrestricted 0.0 Metagenome 3300070268 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Colorado, USA - CPER_047-M-20190624-COMP-DNA1 3300070268 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 34889589 97053 74 6 100 9 0.0 Metagenome 3300013676 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01325 Weill Cornell Medical College 3300013676 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.82 -73.88 14378353 22253 12 0 16 0 SRX823265 0.0 Metagenome 3300014348 *Microbiome Permanent Draft Wastewater microbial communities from lab-scale CANDO bioreactor activated sludge, Evanston, Illinois, US Wastewater microbial communities from lab-scale CANDO bioreactor activated sludge, Evanston, Illinois, US - Nov_13_2015 Beijing Genomics Institute (BGI) 3300014348 Metagenome Analysis CLC Bio 6.0.2 released by JGI data releasing policy Yes Yes hangao2017@u.northwestern.edu Han Gao No Engineered Bioreactor Unclassified Aerobic Unclassified synthetic wastewater 42.057879 -87.67651 410976769 591214 71 1 101 6 0.0 Metagenome 3300001692 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A1-11 DOE Joint Genome Institute (JGI) 3300001692 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 1549058 5323 16 0 31 0 SRX1990522 Unrestricted 0.0 Metagenome 3300017691 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_03OCT2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017691 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 235635732 489078 294 141 422 262 SRX3927019 Unrestricted 5.81 Metagenome 3300042524 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Mar2013s1D0-rr0664 DOE Joint Genome Institute (JGI) 3300042524 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 691249712 1110711 244 107 306 142 Unrestricted 22.89 Metagenome 3300047332 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Frasne, France - Sphagnum magellanicum 3OTC_MAG_FR DOE Joint Genome Institute (JGI) 3300047332 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 1162471199 2428868 576 162 955 217 SRX14787542 Unrestricted 7.03 Metagenome 3300017907 *Microbiome Permanent Draft Marine microbial communities from Caribbean coral reef seawater Marine microbial communities from Caribbean coral reef seawater, Cuba - P. astreoides University of Illinois, Urbana-Champaign 3300017907 Metagenome Analysis MEGAHIT v1.1.1-2-g02102e1 released by JGI data releasing policy No Yes lweber@whoi.edu Laura Weber No Environmental Aquatic Intertidal zone Marine Coral reef seawater 20.82598 -78.97931 342650271 330668 28 4 41 6 0.0 Metagenome 3300028906 *Microbiome Permanent Draft Soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, under manipulated climate change conditions. Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028906 Metagenome Analysis spades v. 3.11.1 Yes Yes jmtalbot@bu.edu; ptempler@bu.edu Jennifer Bhatnagar; Pamela Templer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 3346743165 7523404 801 71 1571 124 SRX2838822 Unrestricted 8.15 Metagenome 2025206003 *Microbiome Permanent Draft Hypersaline water metagenomes of microbial communities from Lake Tyrrell, Victoria, Australia Hypersaline water microbial communities from Lake Tyrrell, Victoria, Australia, sample J07AB- all scaffolds J. Craig Venter Institute (JCVI) 2025206003 Metagenome Analysis Celera, Phrap No Yes eallen@ucsd.edu Eric Allen Yes 24335829 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline water -35.309 142.7795 62549170 62915 15 0 17 0 0.0 Metagenome 3300045522 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_2_B DOE Joint Genome Institute (JGI) 3300045522 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 168686245 195734 102 1 112 1 Unrestricted 148.96 Metagenome 3300031133 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLT.R1 DOE Joint Genome Institute (JGI) 3300031133 Metagenome Analysis spades v. 3.12.0 Yes Yes icelab@berkeley.edu Steven Lindow No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 37.8864 -122.2981 930118898 1690109 434 30 543 49 SRX5656685 Unrestricted 47.1 Metagenome 3300003427 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA DOE Joint Genome Institute (JGI) 3300003427 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 288703079 551218 286 22 522 33 SRX2569220 Unrestricted 0.0 Metagenome 3300007144 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina ""control"", waterEBic1" University of New South Wales 3300007144 Metagenome Analysis IDBA-UD released by Emmanuelle BOTTE Yes Yes n.webster@aims.gov.au Nicole Webster No Environmental Aquatic Volcanic Marine Unclassified Volcanic CO2 seep -9.828217 150.820517 134070003 315565 178 0 290 0 0.0 Metagenome 3300025606 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0M (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025606 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu; shaomei.he@gmail.com Katherine McMahon; Shaomei He No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 326310531 662591 195 57 314 72 SRX2518389 Unrestricted 0.0 Metagenome 3300020138 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant dump, University of Wisconsin, Madison, United States - 1B0 DOE Joint Genome Institute (JGI) 3300020138 Metagenome Analysis spades v. 3.10.1 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0758 -89.4125 127339579 255435 161 13 288 18 SRX3988153 Unrestricted 19.39 Metagenome 3300028226 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Site 227 with 0.8UM filter - spades J. Craig Venter Institute 3300028226 Metagenome Analysis Spades v. 3.11.1 Released per Simon Roux. Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater -68.4 78.18278 6.94 33899871 72180 35 0 54 0 0.0 Metagenome 3300011212 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01213 Weill Cornell Medical College 3300011212 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.86 -73.89 31923833 51932 18 0 31 0 SRX823168 0.0 Metagenome 3300049889 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 302-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300049889 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.90806 -107.028737 361480632 901552 448 52 767 79 Unrestricted 7.35 Metagenome 3300013122 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo - kab_092012_10.3m DOE Joint Genome Institute (JGI) 3300013122 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -1.64 29.05 676155583 1355484 800 5 1237 8 SRX7700394 Unrestricted 26.06 Metagenome 3300049214 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Frasne, France - Sphagnum fallax 1C_SF_FR DOE Joint Genome Institute (JGI) 3300049214 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 1410991839 2566270 572 145 911 225 SRX14794117 Unrestricted 8.65 Metagenome 3300029409 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 063_3_11_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029409 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 164492465 218298 173 0 227 0 0.0 Metagenome 3300011778 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00486 Weill Cornell Medical College 3300011778 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.82 -73.89 41939195 58148 10 0 20 0 SRX822455 0.0 Metagenome 3300069311 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_060-M-20160726-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069311 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 9510699 30396 35 5 65 5 0.0 Metagenome 3300070463 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_027-M-20200601-COMP-DNA1 3300070463 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 25995265 84259 90 7 155 8 0.0 Metagenome 3300014942 *Microbiome Permanent Draft Synthetic microbial community for library methods comparison from University of Liverpool, United Kingdom Synthetic microbial communities for library methods comparison from University of Liverpool, United Kingdom - Mg5 University of Liverpool 3300014942 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 53.405936 -2.9677609 68894424 145198 71 0 121 3 ERX1325888 0.0 Metagenome 3300046782 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 soil DOE Joint Genome Institute (JGI) 3300046782 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121006 -123.270477 5.41 1536285845 2467284 403 28 647 43 Unrestricted 13.13 Metagenome 3300036863 *Microbiome Permanent Draft Soil microbial communities from fields in the western Corn Belt region, Nebraska, United States Soil microbial communities from fields in the western Corn Belt region, Nebraska, United States - Switchgrass plot 313, 120 kg/ha N, depth 3 DOE Joint Genome Institute (JGI) 3300036863 Metagenome Analysis metaspades v. 3.13.0 Yes Yes marty.schmer@ars.usda.gov Marty Schmer No Environmental Terrestrial Agricultural land Soil Unclassified soil 41.1681 -96.4109 1709049161 2689521 399 6 709 12 SRX8296445 Unrestricted 17.0 Metagenome 3300018081 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1 DOE Joint Genome Institute (JGI) 3300018081 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 .3 1056885882 2210781 706 10 1259 20 SRX3939453 Unrestricted 5.59 Metagenome 3300005526 *Microbiome Permanent Draft Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 DOE Joint Genome Institute (JGI) 3300005526 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shadeash@msu.edu, shade.ashley@gmail.com Ashley Shade Yes 30397342 Environmental Terrestrial Unclassified Soil Unclassified Surface soil 40.7999 -76.3402 1897507056 6001372 1397 38 2530 90 SRX2838883 Unrestricted 0.0 Metagenome 3300014062 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00433 Weill Cornell Medical College 3300014062 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.88 10490481 13409 8 0 14 0 SRX822402 0.0 Metagenome 3300025530 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-3-D (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025530 Metagenome Analysis spades v. 3.11.1 Yes Yes jsvander@ucdavis.edu Jean VanderGheynst Yes 27981239 Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 212247773 283424 246 7 277 16 SRX2557249 Unrestricted 0.0 Metagenome 3300031926 *Microbiome Permanent Draft Microbial communities from the deep biosphere Freshwater microbial communities from methane shale flowback fluids - Sample_08292012 re-assembly Marine Biological Laboratory 3300031926 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Groundwater Freshwater Unclassified Freshwater 6.2 2518 47998028 83228 28 1 57 1 SRX1008491 0.0 Metagenome 7000000329 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159753524 replicate 1 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000329 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 87538572 149382 0 0 0 0 0.0 Metagenome 3300027320 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027320 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 197996006 483172 187 33 296 72 SRX2753579 Unrestricted 0.0 Metagenome 3300037760 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVT2_Jul25_35_f DOE Joint Genome Institute (JGI) 3300037760 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2315654356 3559982 621 10 967 10 SRX9162537 Unrestricted 17.18 Metagenome 3300037342 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 1-5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037342 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0474 817342196 1754143 325 18 549 38 SRX4415362, SRX8128068 Unrestricted 0.0 Metagenome 3300036906 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 S1 30-34 DOE Joint Genome Institute (JGI) 3300036906 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0475 409995942 632570 139 0 173 0 SRX8138786 Unrestricted 25.19 Metagenome 3300011794 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00960 Weill Cornell Medical College 3300011794 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.92 18342702 30848 11 0 19 0 SRX822922 0.0 Metagenome 3300006434 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T18 (2) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006434 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 40497493 78929 44 0 104 0 0.0 Metagenome 3300001079 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_O1 DOE Joint Genome Institute (JGI) 3300001079 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 4108226 12891 124 80 205 139 SRX3311920 Unrestricted 0.0 Metagenome 3300035250 *Microbiome Permanent Draft Seawater and sediment microbial communities from various locations Seawater microbial communities from, Arabian Sea, Indian Ocean - AMALJGI-DNA-10 DOE Joint Genome Institute (JGI) 3300035250 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bbw@princeton.edu Bess Ward No Environmental Aquatic Oceanic Marine Unclassified seawater 15.15 64.0 1333339749 2622043 914 73 1569 141 SRX8298357 Unrestricted 14.35 Metagenome 3300002205 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 day 07 University of Sao Paulo, Virginia Bioinformatics Institute 3300002205 Metagenome Analysis SoapDeNovo released per PI's request No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 151586253 417985 4 3 23 14 0.0 Metagenome 3300029582 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35666 Beijing Genomics Institute (BGI) 3300029582 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 197947485 271991 191 1 254 3 0.0 Metagenome 3300055513 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.3C.11 SIP fraction DOE Joint Genome Institute (JGI) 3300055513 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 194214561 317341 152 17 277 34 Unrestricted 18.1 Metagenome 3300049792 *Microbiome Permanent Draft Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA - 6_s_apr_JRB_CZO DOE Joint Genome Institute (JGI) 3300049792 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dawsonfairbanks@email.arizona.edu Dawson Fairbanks No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.88299428 -106.5342526 226932037 404279 237 24 419 37 Unrestricted 17.77 Metagenome 3300040255 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_001-M-20160720-COMP-DNA1 Battelle Memorial Institute 3300040255 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 8105361 24796 56 0 108 0 0.0 Metagenome 3300032001 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300032001 Metagenome Analysis spades v. 3.13.0 Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Unclassified Soil 18.321 -65.8172 4149675499 8729832 1060 37 1804 71 SRX5634820, SRX3604196 Unrestricted 0.0 Metagenome 3300012499 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.yng.030610 DOE Joint Genome Institute (JGI) 3300012499 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Environmental Terrestrial Unclassified Soil Unclassified unplanted soil 35.9076 -79.0506 124660043 337326 213 10 413 15 SRX3527493 Unrestricted 0.0 Metagenome 3300064904 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 688 in Beauvallon, Alberta, Canada - S00JY_0300 Microbiome Insights 3300064904 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.394731 -111.1955062 63104437 97202 36 0 97 1 0.0 Metagenome 2006543006 *Microbiome Finished Marine microbial communities from anoxic basin of Saanich Inlet in Vancouver, Canada Marine microbial communities from anoxic basin of Saanich Inlet - SI040908_100 DOE Joint Genome Institute (JGI) 2006543006 Metagenome Analysis No Yes sgtringe@lbl.gov, shallam@interchange.ubc.ca Susannah Tringe, Steven Hallam Yes 19900896 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.616667 -123.5 57116388 89785 36 0 38 0 Unrestricted 0.0 Metagenome 3300054102 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10 re-annotation DOE Joint Genome Institute (JGI) 3300054102 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 1076718625 2238594 593 47 975 92 SRX3959976 0.0 Metagenome 3300025454 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_20_150 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025454 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 224345902 423914 136 7 211 8 SRX3006110 Unrestricted 0.0 Metagenome 3300025829 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-16B (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025829 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.299 -156.61 460723844 1216607 392 17 692 14 SRX2910045 Unrestricted 0.0 Metagenome 3300000882 *Microbiome Permanent Draft Freshwater and marine microbial communities from the Columbia River, USA, of estuaries and plumes across salinity gradients Freshwater microbial communities from the Columbia River University of Maryland 3300000882 Metagenome Analysis released per PI's request No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato Yes 26536246 Environmental Aquatic Lotic Freshwater Unclassified Freshwater and marine 46.18 -123.18 292906435 767282 108 26 260 63 0.0 Metagenome 3300039131 *Microbiome Permanent Draft Freshwater sediment microbial communities from Alaska Lake sediment microbial communtites from St. Paul Island, Alaska - PH116-PH182_265 University of California, Santa Cruz 3300039131 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Sediment Lake sediment 57.18 -170.25 5589680 16925 13 3 26 3 0.0 Metagenome 3300023056 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS2 DOE Joint Genome Institute (JGI) 3300023056 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.3809 -123.4135 114841735 297850 154 39 306 51 SRX4393145 Unrestricted 8.72 Metagenome 3300022452 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1OPP3 JM60 AGRF 3300022452 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 54242691 85815 38 0 60 0 0.0 Metagenome 3300002925 *Microbiome Permanent Draft Hot springs facies microbial communities from Mammoth Hot Springs, Yellowstone National Park, Wyoming, USA Hot springs facies microbial communities from Mammoth Hot Springs, Yellowstone National Park, Wyoming, USA - MHS-Pond Facies_GO University of Illinois, Urbana-Champaign 3300002925 Metagenome Analysis released per JGI data release policy No Yes ; dongyiran79@gmail.com Dr. Bruce W. Fouke, Dr. Bruce W. Fouke; Yiran Dong No Environmental Aquatic Unclassified Thermal springs Unclassified Hot springs facies 44.9766 -110.7016 172800543 264845 132 2 194 4 0.0 Metagenome 3300002490 *Microbiome Permanent Draft Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland, that are autotrophic Deep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/5 DOE Joint Genome Institute (JGI) 3300002490 Metagenome Analysis Yes Yes rizlan.bernier-latmani@epfl.ch Rizlan Bernier-Latmani Yes 27739431 Environmental Aquatic Groundwater Deep subsurface Porewater Deep surbsurface 47.379 7.1648 205087518 350317 203 1 289 2 SRX957907 Unrestricted 0.0 Metagenome 3300047305 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mackenzie River, Tsiigehtchic, Northwest Territories, Canada - Mackenzie 2004-4 DOE Joint Genome Institute (JGI) 3300047305 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 67.4333 -133.75 240155265 564995 370 42 639 76 Unrestricted 16.45 Metagenome 3300008492 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human throat microbial communities from NIH, USA - visit 2, subject 763577454 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008492 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human 12088394 21930 21 0 46 1 SRX024956 0.0 Metagenome 3300069524 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_059-O-20160719-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069524 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 155808805 422593 143 59 273 97 0.0 Metagenome 3300056359 *Microbiome Permanent Draft Freshwater microbial communities from high-altitude lakes in Yosemite National Park, California, USA Freshwater microbial communities from Upper Cathedral Lake in Yosemite National Park, California, USA - Y16_189_UC1_tf DOE Joint Genome Institute (JGI) 3300056359 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmbeman@gmail.com J Michael Beman No Environmental Aquatic Lake Freshwater Unclassified Freshwater 37.8395 -119.4154 9651124 27945 17 0 27 4 Unrestricted 327.57 Metagenome 3300007813 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_6_15 DOE Joint Genome Institute (JGI) 3300007813 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jim.fredrickson@pnnl.gov, jim.fredrickson@pnnl.gov; binskeep@montana.edu Jim Fredrickson, Jim Fredrickson; William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.7315 -110.7113 3 23724083 84202 3 0 5 0 SRX2753792 Unrestricted 0.0 Metagenome 7000000728 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 550534656 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000728 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 8233654 15371 0 0 0 0 SRX098551, SRX024908 0.0 Metagenome 3300027196 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027196 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 167043262 370621 192 38 272 79 SRX2753548 Unrestricted 31.4 Metagenome 3300043501 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 037-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043501 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9204 -106.9513 417009306 1107554 535 21 1015 36 Unrestricted 8.94 Metagenome 3300041031 *Microbiome Permanent Draft Hydraulic fracturing wastewater impacted soil microbiome project Amended soil microbial communities from Grande Prairie, Alberta, Canada - GP500 University of British Columbia 3300041031 Metagenome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy Yes Yes alessi@ualberta.ca Daniel S. Alessi No Environmental Terrestrial Unclassified Soil Unclassified Soil 55.1707 -118.7884 4539729 6541 16 1 31 1 0.0 Metagenome 3300016719 *Microbiome Permanent Draft Viral community in wastewater in Singapore Influent viral communities from WWT plant in Singapore - INF_Nov16 Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016719 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Engineered WWTP Unclassified Activated sludge Unclassified wastewater 1.28 103.74 37391513 62444 0 1 18 1 0.0 Metagenome 3300024282 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Atlam_RepB_8d DOE Joint Genome Institute (JGI) 3300024282 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 137642399 294750 145 14 204 18 SRX4547497 Unrestricted 14.52 Metagenome 3300004048 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleA_D2 DOE Joint Genome Institute (JGI) 3300004048 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.224476 -122.019341 545380819 1748786 753 4 1615 9 SRX7143106 Unrestricted 0.0 Metagenome 3300039806 *Microbiome Permanent Draft Glacier soil microbial communities from Mackay Glacier, Antarctica Glacier soil microbial communities from Mackay Glacier, Antarctica - MS7-5 University of Pretoria 3300039806 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Terrestrial Glacier Soil Unclassified Glacier soil -77.024 161.756 31926004 56927 16 0 27 0 0.0 Metagenome 3300043399 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Virginia, United States - lewisrun_2019_sw_WHONDRS-S19S_0014 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043399 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 39.0944 -77.9815 342504506 592208 363 52 543 71 Unrestricted 24.54 Metagenome 3300000374 *Microbiome Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine sediment microbial community from Union City, CA, USA - Pond 1C Sediment 2 DOE Joint Genome Institute (JGI) 3300000374 Metagenome Analysis released based on JGI ITS Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Saline Non-marine Saline and Alkaline Sediment Salt pond 37.569083 -122.103267 214760258 550194 459 16 767 27 Unrestricted 0.0 Metagenome 3300027643 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027643 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Saprolite Vadose zone soil 39.7291 -123.6419 375605483 833095 204 15 378 12 SRX2752507 Unrestricted 0.0 Metagenome 3300028534 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in the Atlantic and Pacific Ocean Pompeii worm associated microbial communities from hydrothermal vent at the East Pacific Rise, Pacific Ocean - Alvinella DOE Joint Genome Institute (JGI) 3300028534 Metagenome Analysis spades v. 3.11.1 Yes Yes pgirguis@oeb.harvard.edu Peter Girguis No Host-associated Annelida Unclassified Integument Unclassified Pompeii worm surface 9.8416 -104.2917 584750284 1130233 763 20 1080 12 SRX5246602 Unrestricted 22.04 Metagenome 3300023171 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L169-409C-1 DOE Joint Genome Institute (JGI) 3300023171 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 786445810 1570955 621 156 968 203 SRX4801553 Unrestricted 10.93 Metagenome 3300039963 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA FertPrarie soil microbial communities from Boone County, Iowa, USA - PF15-WS-July2012 Iowa State University 3300039963 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land FertPrarie soil 42.01375 -93.783837 20379067 61864 98 1 198 3 0.0 Metagenome 3300029744 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36674 Beijing Genomics Institute (BGI) 3300029744 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 201613473 273159 185 0 262 0 0.0 Metagenome 3300015313 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_01AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015313 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 176368866 303160 21 119 30 207 SRX3923694 Unrestricted 7.65 Metagenome 3300034164 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Sediment microbial communities from East River floodplain, Colorado, United States - 14_s17 DOE Joint Genome Institute (JGI) 3300034164 Metagenome Analysis metaspades v. 3.13.0 Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Aquatic Sediment Floodplain Unclassified sediment 38.9229 -106.9499 524002199 1321524 430 10 824 15 SRX7631462 Unrestricted 7.4 Metagenome 3300040810 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Estuary water microbial communities from Narragansett Bay, Rhode Island, USA - E3_AmbB DOE Joint Genome Institute (JGI) 3300040810 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.9078 -71.5683 469685851 735513 260 130 350 192 SRX9641342 Unrestricted 17.77 Metagenome 3300042236 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D250_1 DOE Joint Genome Institute (JGI) 3300042236 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 160269112 222207 117 5 160 12 Unrestricted 72.15 Metagenome 3300039043 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample36 King Abdulaziz City for Science and Technology (KACST) 3300039043 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 25.46 36.6 54522748 130197 58 0 128 0 SRX1097604 0.0 Metagenome 3300002191 *Microbiome Permanent Draft Marine microbial communities from the Red Sea LCL_V3 3300002191 Metagenome Analysis De Novo released by JGI data releasing policy No Yes bioosama@aucegypt.edu Osama Ali No Environmental Aquatic Unclassified Marine Unclassified Marine 21.34383 38.07683 45977870 94700 10 0 13 0 0.0 Metagenome 3300046053 *Microbiome Permanent Draft Halite microbial communities from Atacama Desert, Chile Halite microbial communities from Chanaral, Atacama Desert, Chile - CH3 Novogene 3300046053 Metagenome Analysis metaWRAP v. 1.3.2 No Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Halite Rock-dwelling (endoliths) Unclassified Halite -26.167 -70.302 53340974 64950 13 0 9 0 0.0 Metagenome 3300021327 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 DOE Joint Genome Institute (JGI) 3300021327 Metagenome Analysis spades v. 3.11.1-check Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Host-associated Plants Nodule Roots Unclassified root nodules 34.06 -118.44 499082219 456174 28 34 30 70 SRX4051791 Unrestricted 86.17 Metagenome 3300027312 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027312 Metagenome Analysis spades v. 3.11.1 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Host-associated Plants Rhizosphere Roots Unclassified Agave 21.0411 -103.9083 284066904 473369 233 17 361 34 SRX2122698 Unrestricted 0.0 Metagenome 3300035160 *Microbiome Permanent Draft Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China - KO2 Sun Yat-Sen University 3300035160 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy No Yes yuxiaoli92@163.com Xiaoli Yu No Environmental Aquatic Intertidal zone Marine Mangrove sediment mangrove sediment 23.45 116.43 562926650 1284356 388 5 826 5 0.0 Metagenome 3300031767 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1 DOE Joint Genome Institute (JGI) 3300031767 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5341 -110.798 250263772 586185 102 0 158 0 SRX5651014 Unrestricted 258.49 Metagenome 3300070634 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_001-M-20190807-COMP-DNA1 3300070634 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 16862752 50880 35 13 85 20 0.0 Metagenome 3300042746 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_1-July-14 NMDC pilot DOE Joint Genome Institute (JGI) 3300042746 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 54567383 135201 197 56 336 91 SRX2838890 0.0 Metagenome 3300055276 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_SEK2_1_to_SEK2 DOE Joint Genome Institute (JGI) 3300055276 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.245 1221751685 2513360 748 211 1166 342 Unrestricted 0.0 Metagenome 3300029234 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011691-140 Beijing Genomics Institute (BGI) 3300029234 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 176414892 211749 137 0 219 0 0.0 Metagenome 3300053093 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere DOE Joint Genome Institute (JGI) 3300053093 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.587532 -123.193385 1460549429 2734856 516 189 860 249 Unrestricted 17.35 Metagenome 3300012644 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100781 University of Pennsylvania 3300012644 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 25134395 60012 35 5 51 12 SRX756072 0.0 Metagenome 3300050144 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_RHK2_5_to_SEK2 DOE Joint Genome Institute (JGI) 3300050144 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.245 392247530 703868 299 106 494 177 Unrestricted 26.08 Metagenome 3300018062 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG DOE Joint Genome Institute (JGI) 3300018062 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 4.0627 -73.195 2599779430 5270603 1576 30 2725 69 SRX3936926 Unrestricted 6.51 Metagenome 3300014081 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Vietnam to Iowa, USA - VN9 Iowa State University 3300014081 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 3258123 5347 0 1 0 0 SRX1150322 0.0 Metagenome 3300039554 *Microbiome Permanent Draft Glacier soil microbial communities from Mackay Glacier, Antarctica Glacier soil microbial communities from Mackay Glacier, Antarctica - PT-2 University of Pretoria 3300039554 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Terrestrial Glacier Soil Unclassified Glacier soil -77.046 161.357 133513126 244688 68 0 89 0 0.0 Metagenome 3300050211 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water microbial communities from Sandhills, Nebraska, United States - NSL_Bean_2019_MMG DOE Joint Genome Institute (JGI) 3300050211 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.7748 -102.5295 1828926053 2827708 586 29 805 44 Unrestricted 23.49 Metagenome 3300029561 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI021997-32 Beijing Genomics Institute (BGI) 3300029561 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 168214220 225530 150 0 213 0 0.0 Metagenome 3300006663 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T5 (1) BES, Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006663 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl .ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 34112711 64759 52 0 55 0 0.0 Metagenome 3300026307 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0927_02_40cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026307 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 313379763 528357 221 9 336 16 SRX2519698 Unrestricted 0.0 Metagenome 2088090031 *Microbiome Permanent Draft Brackish water microbial communities from Lake Sakinaw,Canada Brackish water microbial communities from Lake Sakinaw in Canada: eDNA_2 (120m) v1 DOE Joint Genome Institute (JGI) 2088090031 Metagenome Analysis released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Brackish water 49.682207 -124.005217 120376854 299533 246 4 490 0 Unrestricted 0.0 Metagenome 3300065604 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 800 in Cowley, Alberta, Canada - S00JY_0139 Microbiome Insights 3300065604 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.2618822 -113.3619356 234846329 334076 78 4 129 5 0.0 Metagenome 3300000147 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 54 02/08/11 150m DOE Joint Genome Institute (JGI) 3300000147 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 40969333 90983 23 0 54 0 Unrestricted 0.0 Metagenome 3300042895 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME18May2016-rr0561 DOE Joint Genome Institute (JGI) 3300042895 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 748784454 1130484 184 21 265 29 Unrestricted 24.32 Metagenome 3300010224 *Microbiome Permanent Draft Soil microbial communities from Bangor area, North Wales, UK enriched with cashew seed oil Soil microbial communities from Bangor area, North Wales, UK enriched with cashew seed oil - week1, replicate 2 Fidelity Systems Inc 3300010224 Metagenome Analysis Phred/Phrap/Consed v. 23.0 released per JGI data release policy Yes Yes stepan.toshchakov@gmail.com Stepan Toshchakov No Engineered Lab enrichment Unclassified Unclassified Unclassified soil 53.24 -4.01 95618183 191484 46 3 54 2 0.0 Metagenome 3300000861 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from University of Liverpool Illum_XT3_MetaVelvet University of Liverpool 3300000861 Metagenome Analysis Meta-Velvet released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 18203456 35267 67 0 110 0 0.0 Metagenome 3300049635 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_6_D DOE Joint Genome Institute (JGI) 3300049635 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 191090595 223266 112 1 143 2 Restricted 96.94 Metagenome 3300025796 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025796 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.05241603 -121.76907401 195089375 391844 178 0 392 0 SRX7142760 Unrestricted 0.0 Metagenome 3300045586 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Des Moines River, Iowa, USA - NASQAN2011_265 DOE Joint Genome Institute (JGI) 3300045586 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 40.7278 -91.9596 592360968 1338318 456 124 726 218 Unrestricted 0.0 Metagenome 3300005615 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG DOE Joint Genome Institute (JGI) 3300005615 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 4772794475 13984694 3646 230 6279 422 SRX2745015 Unrestricted 0.0 Metagenome 7000000345 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764305738 replicate 2 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000345 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 19111296 32694 0 0 0 0 0.0 Metagenome 3300002087 *Microbiome Permanent Draft Soil microbial communities from Kansas (Konza Prairie Natural Area and Manhattan, Kansas, USA) Soil microbial communities from Manhattan, Kansas, USA - Sample 300um emPCR DOE Joint Genome Institute (JGI) 3300002087 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 revert back to private per Christa Yes Yes sgtringe@lbl.gov, sgtringe@lbl.gov; ELBrodie@lbl.gov Susannah Tringe, Susannah Tringe; Eoin Brodie No Environmental Terrestrial Unclassified Soil Unclassified Soil 39.214 -96.5852 35689 91 1 0 0 0 Unrestricted 0.0 Metagenome 3300033493 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D3_A DOE Joint Genome Institute (JGI) 3300033493 Metagenome Analysis spades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified soil 41.3776 -82.5117 1068088564 2775585 1165 6 2045 11 SRX7584242 Unrestricted 0.0 Metagenome 3300022331 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Garden Lake, Rottnest Island (WA - Australia) - GL1GP2 JM11 AGRF 3300022331 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.995604 115.536873 19153660 40956 35 3 56 3 0.0 Metagenome 3300033274 *Microbiome Permanent Draft Meromitic Lake A Freshwater microbial communities from meromitic lake A, Ellesmere Island, Canada - Sample 22m re-sequencing Laval University 3300033274 Metagenome Analysis SPADES v. 3.10.1 released by JGI data releasing policy Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 82.99445 -75.443367 487452376 1795154 463 3 735 18 0.0 Metagenome 3300024450 *Microbiome Permanent Draft Vaginal microbial communities from lab mice Vaginal microbial communities from lab mice with HSV-2 infection, Madrid, Spain - G2-S16 treatment D1, day 20 Polytechnic University of Valencia 3300024450 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Vagina Reproductive system Unclassified mice vagina 40.4191094 -3.6725753 766455 1186 0 0 0 0 0.0 Metagenome 3300008968 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada T0 (3) T34 (live) enrichments of Methanogenic microbial communities using Athabascan oil sands DE NOVO (2) Shell Corporation 3300008968 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 74094274 283301 105 2 150 6 0.0 Metagenome 3300011456 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01114 Weill Cornell Medical College 3300011456 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.9 15948430 21125 10 0 10 0 SRX823069 0.0 Metagenome 3300013186 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100268 University of Pennsylvania 3300013186 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 24137919 57795 18 0 28 0 SRX756633 0.0 Metagenome 7000000270 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764325968 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000270 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 85651467 173531 0 0 0 0 0.0 Metagenome 3300027279 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027279 Metagenome Analysis spades v. 3.11.1 Yes Yes dab14@psu.edu Donald Bryant Yes 27379049 Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 229767490 414374 146 0 186 0 SRX2740067 Unrestricted 0.0 Metagenome 3300017701 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N DOE Joint Genome Institute (JGI) 3300017701 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 125950562 311395 4 1 11 2 SRX7205565 Unrestricted 49.28 Metagenome 3300006722 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 686765762 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006722 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 58638823 81847 37 0 52 0 0.0 Metagenome 3300000609 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 31JUL2007 epilimnion DOE Joint Genome Institute (JGI) 3300000609 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300071117 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from KU Field Station, Kansas, USA - UKFS_003-M-20180814-COMP-DNA1 3300071117 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 18275061 56602 69 7 141 7 0.0 Metagenome 3300042659 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Odontotermes sp. from Kajiado County, Kenya - TD116 Eurofins MWG Operon 3300042659 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut -1.8343333 36.8191724 461428083 532789 187 6 224 16 0.0 Metagenome 3300005668 *Microbiome Permanent Draft Microbial communiries from Sachin Industrial Area Industrial polluted soil microbial communities from Sachin, Gujarat, India Anand Agricultural University 3300005668 Metagenome Analysis not assembled released per JGI data release policy No Yes ndneelam13@gmail.com Neelam Devpura No Environmental Terrestrial Unclassified Soil Contaminated soil and sediment 21.08 72.88 9015935 34938 35 73 100 150 0.0 Metagenome 3300024261 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MG DOE Joint Genome Institute (JGI) 3300024261 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca; shallam@interchange.ubc.ca Sean Crowe; Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5847 -123.5008 999519175 1893705 534 42 779 81 SRX4484598 Unrestricted 26.19 Metagenome 3300002949 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-3-D DOE Joint Genome Institute (JGI) 3300002949 Metagenome Analysis Yes Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 100370668 197253 191 18 350 37 SRX2568351 Unrestricted 0.0 Metagenome 3300039714 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_001-M-20170802-COMP-DNA1 Battelle Memorial Institute 3300039714 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 71831974 201849 176 4 324 1 0.0 Metagenome 3300013637 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100553 University of Pennsylvania 3300013637 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9901067 15471 12 3 10 5 SRX756201 0.0 Metagenome 3300012060 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New York, USA - TSNY021 MetaG DOE Joint Genome Institute (JGI) 3300012060 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 40.8926 -72.8224 207060220 380552 157 20 210 30 SRX3539454 Unrestricted 0.0 Metagenome 3300069277 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_001-O-20210728-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069277 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 40.042345 -105.558975 2360663848 5740347 993 265 1988 463 0.0 Metagenome 3300025845 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-12 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025845 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 670366198 1217158 660 33 1069 46 SRX3198186 Unrestricted 0.0 Metagenome 3300015295 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_01AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015295 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 142742301 262676 26 30 34 54 SRX3923850 Unrestricted 10.01 Metagenome 3300070930 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_003-M-20160928-COMP-DNA1 3300070930 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 64282497 185885 105 12 244 16 0.0 Metagenome 3300055082 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_4-s115 day 210 DOE Joint Genome Institute (JGI) 3300055082 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1367919059 1982966 210 143 299 156 Unrestricted 36.56 Metagenome 3300001702 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2-12 DOE Joint Genome Institute (JGI) 3300001702 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 241607 854 16 1 53 2 SRX1990533 Unrestricted 0.0 Metagenome 3300029013 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 26_12M Beijing Genomics Institute (BGI) 3300029013 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 98118804 110313 76 0 103 0 ERX491035 0.0 Metagenome 3300042985 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_PF_400_PacBio MetaG (version 2) DOE Joint Genome Institute (JGI) 3300042985 Metagenome Analysis metaFlye v. 2.5-release released based on JGI ITS Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Seawater 20.3333 -107.0 31337062 43809 19 3 17 2 SRX8127379, SRX8127378, SRX8127377 Unrestricted 0.0 Metagenome 3300012940 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Organic Plus compost microbial communities from Emeryville, California, USA - Original compost - Organic plus compost (OP) DOE Joint Genome Institute (JGI) 3300012940 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes JMGladden@lbl.gov John Gladden No Engineered Solid waste Composting Mixed feedstock Commercial compost compost 37.83 -122.29 1883118104 3135742 1843 120 2797 149 SRX4808933 Unrestricted 0.0 Metagenome 3300020383 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000929 (ERX556043-ERR598971) CEA Genoscope 3300020383 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 2.1008 -84.5107 852902191 2132119 475 69 918 126 0.0 Metagenome 3300028151 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_05JUN2017_LD1 DOE Joint Genome Institute (JGI) 3300028151 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 77630135 145034 18 61 22 135 SRX5345785 Unrestricted 20.48 Metagenome 3300057153 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2021-0082 DOE Joint Genome Institute (JGI) 3300057153 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.82726 -83.19041 350109784 755058 202 122 374 160 Unrestricted 20.18 Metagenome 3300048017 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_141 DOE Joint Genome Institute (JGI) 3300048017 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9223 -106.9493 400818837 956307 1040 108 1920 194 Restricted 0.0 Metagenome 3300029526 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P051V1 Beijing Genomics Institute (BGI) 3300029526 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 59256829 80562 63 0 90 0 0.0 Metagenome 3300059457 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.18W.7 SIP fraction DOE Joint Genome Institute (JGI) 3300059457 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 200094631 367042 119 9 211 18 Unrestricted 0.0 Metagenome 3300048514 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - Maria566 DOE Joint Genome Institute (JGI) 3300048514 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Sand Soil Desert sand -78.0974 163.9628 263537721 563332 232 2 396 3 Unrestricted 24.0 Metagenome 2004178001 *Microbiome Permanent Draft Olavius algarvensis microbial communities from Capo di Sant'Andrea bay, Elba, Italy Olavius algarvensis microbial communities from Capo di Sant'Andrea bay, Elba, Italy - Delta1 DOE Joint Genome Institute (JGI), Max Planck Institute 2004178001 Metagenome Analysis No Yes ndubilie@mpi-bremen.de Nicole Dubilier Yes 16980956 Host-associated Annelida Unclassified Integument Unclassified Olavius algarvensis 42.807222 10.141111 .3 13536737 12132 1 0 1 0 0.0 Metagenome 3300043469 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Jun2017-rr0315 DOE Joint Genome Institute (JGI) 3300043469 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 777045525 1162804 240 34 334 46 Unrestricted 19.41 Metagenome 3300008740 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um, replicate a Georgia Genomics Facility 3300008740 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 248035084 335702 138 114 191 142 0.0 Metagenome 3300008362 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160400887 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008362 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 128921695 185841 96 0 142 0 0.0 Metagenome 3300011604 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00947 Weill Cornell Medical College 3300011604 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -73.9 25892104 39794 28 0 25 0 SRX822909 0.0 Metagenome 3300047451 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_170719.NP2 DOE Joint Genome Institute (JGI) 3300047451 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 317292102 670632 269 50 409 97 Unrestricted 9.56 Metagenome 7000000012 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 160380657 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000012 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 66711640 118067 0 0 0 0 0.0 Metagenome 3300059738 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1555A-02 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059738 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2024 -123.9409 178239308 374657 153 7 220 10 SRX2753737 Unrestricted 0.0 Metagenome 3300022216 *Microbiome Permanent Draft Anaerobic microbial community of wastewater bioreactor in Changsha, Hunan, China Activated sludge microbial communities from anaerobic bioreactor in Hunan University, Changsha, China - 1 Beijing Novogene Bioinformatics Technology Co., Ltd 3300022216 Metagenome Analysis IDBA v.1.1.1 released by JGI data releasing policy No Yes yuezheng@uw.edu Yue Zheng No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 28.2282 112.9388 602803548 1126454 553 2 899 2 0.0 Metagenome 3300049602 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA31 DOE Joint Genome Institute (JGI) 3300049602 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 292964582 800829 363 8 677 8 Unrestricted 6.93 Metagenome 3300000826 *Microbiome Permanent Draft Compost microbial communities from Hongzhou City, China Compost microbial communities from Hongzhou City, China, sample 1 Beijing Genomics Institute (BGI) 3300000826 Metagenome Analysis released by Cheng Wang No Yes wangcheng0530@126.com Cheng Wang No Engineered Solid waste Composting Grass Unclassified Compost 30.295869 120.102097 114252819 173949 7 2 23 3 0.0 Metagenome 3300024037 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-Q75 DOE Joint Genome Institute (JGI) 3300024037 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.2523 -123.026 22778671 73123 143 27 239 28 SRX4392951 Unrestricted 8.61 Metagenome 3300009454 *Microbiome Permanent Draft Host-associated microbial communities of aphids from plants in several locations around USA Microbial communities of aphids from sagebrush in Onefour, Alberta, CA - Artemisaphis artemisicola CNC#HEM063374 seqcov University of Texas, Austin 3300009454 Metagenome Analysis CLC Genomics released per JGI data release policy Yes Yes becky.chong@utexas.edu Rebecca Chong No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified sagebrush 49.115537 -110.468757 111290478 66121 7 1 9 1 0.0 Metagenome 3300046726 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 soil DOE Joint Genome Institute (JGI) 3300046726 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.588071 -123.193978 6.61 163406423 310853 169 8 324 14 Unrestricted 24.03 Metagenome 3300031982 *Microbiome Permanent Draft Microbial communities from the deep biosphere Drill fluid microbial communities from Louisville Seamount Chain, Pacific Ocean - 1373-DF re-assembly The Marine Biological Laboratory 3300031982 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Oceanic Marine Crustal Fluids Drill fluid -28.596 -173.28 17144720 49214 34 6 42 10 SRX869324, SRX834467 0.0 Metagenome 3300044496 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_120 DOE Joint Genome Institute (JGI) 3300044496 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 549051475 1429329 511 11 974 41 Unrestricted 6.94 Metagenome 3300019820 *Microbiome Permanent Draft Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil - Edson_C1 Center for Advanced Technologies in Genomics, Sao Paulo University 3300019820 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 14194084 30148 34 0 61 0 0.0 Metagenome 3300005582 *Microbiome Permanent Draft Freshwater lentic microbial communities from the great Laurentian Lakes, MI, USA for biogeochemical studies Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF DOE Joint Genome Institute (JGI) 3300005582 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified Freshwater lentic 44.504638 -83.045851 623415764 1701009 267 25 482 56 SRX2577337 Unrestricted 0.0 Metagenome 3300000263 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_1000 DOE Joint Genome Institute (JGI) 3300000263 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 48.65 -126.666667 57375237 146291 23 1 83 3 Unrestricted 0.0 Metagenome 3300020529 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 07SEP2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020529 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 100725457 228678 136 20 217 29 SRX1989908 Unrestricted 0.0 Metagenome 3300061642 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Guanica State Forest and Biosphere Reserve, Puerto Rico - GUAN_006-M-20210922-comp-1 DOE Joint Genome Institute (JGI) 3300061642 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tropical forest Soil Unclassified Terrestrial soil 17.963818 -66.875667 1436075524 2481733 254 6 481 8 Unrestricted 19.56 Metagenome 3300043487 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-383 Genome Quebec 3300043487 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 55.871434 -117.173848 972224074 2296077 310 29 437 53 0.0 Metagenome 3300043608 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 110-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043608 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9854 -107.0049 442617465 1223426 421 31 823 51 Unrestricted 7.0 Metagenome 3300053732 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 endosphere DOE Joint Genome Institute (JGI) 3300053732 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.588067 -123.193099 165115820 338537 167 42 257 55 Unrestricted 9.49 Metagenome 3300026164 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_C_D1_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026164 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4971 -122.133 302277617 597776 351 10 564 19 SRX10967256 Unrestricted 0.0 Metagenome 3300003593 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI073_LV_200m_DNA DOE Joint Genome Institute (JGI) 3300003593 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 126115718 236535 115 6 195 8 Unrestricted 0.0 Metagenome 3300042277 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA MBR feed microbial communities from membrane bioreactor in Denver, Colorado, USA - FD_D222 DOE Joint Genome Institute (JGI) 3300042277 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Wastewater Mine water Industrial wastewater Produced water MBR feed 39.7823 -104.9101 471511781 689335 359 0 493 0 Unrestricted 22.2 Metagenome 3300060656 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_005-O-20210806-comp-1 DOE Joint Genome Institute (JGI) 3300060656 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tundra Soil Unclassified Terrestrial soil 68.560148 -149.528532 1853998825 2993133 483 181 831 272 Unrestricted 14.53 Metagenome 3300001735 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-45 DOE Joint Genome Institute (JGI) 3300001735 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 50.0454 -144.8791 38951084 94751 7 0 15 0 Unrestricted 0.0 Metagenome 3300027657 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125 HiSeq DOE Joint Genome Institute (JGI) 3300027657 Metagenome Analysis spades v. 3.11.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9888 -108.3994 423647082 986901 487 11 839 14 SRX5340339, SRX5340338 Unrestricted 0.0 Metagenome 3300006209 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 764143897 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006209 Metagenome Analysis SPADES v3.6.1 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 6183706 8663 7 0 15 0 0.0 Metagenome 3300027965 *Microbiome Permanent Draft Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027965 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade Yes 30397342 Environmental Terrestrial Unclassified Soil Unclassified Surface soil 40.7999 -76.3402 858410333 1366483 447 13 671 25 SRX2837995 Unrestricted 0.0 Metagenome 3300014725 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01535 Weill Cornell Medical College 3300014725 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.99 18231516 31729 14 0 20 0 SRX823411 0.0 Metagenome 3300070393 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_034-O-20200713-COMP-DNA1 3300070393 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 261653 738 4 4 9 3 0.0 Metagenome 3300039057 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - CEB3 Michigan State University 3300039057 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 36.75 175.833333 32020590 88724 3 0 9 1 0.0 Metagenome 3300027918 *Microbiome Permanent Draft Whole metagenome sequencing of microbial communities exiting in soils from Lucknow, Uttar Pradesh, India Soil microbial communities from Dewa Road, Lucknow, Uttar Pradesh, India - S7 National Bureau of Agriculturally Important Microorganisms, Indian Council of Agricultural Research 3300027918 Metagenome Analysis MetaSPAdes v. 3.10.1 released by JGI data releasing policy No Yes arjun.iari@gmail.com Arjun Singh No Environmental Terrestrial Contaminated Soil Pesticide soil 26.98333333 81.15 956516736 2621165 939 26 1302 71 0.0 Metagenome 3300027045 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 40 (SPAdes) DOE Joint Genome Institute (JGI) 3300027045 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 123999126 278297 109 0 194 0 SRX1985055 Unrestricted 0.0 Metagenome 3300006929 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG DOE Joint Genome Institute (JGI) 3300006929 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -13.003 -80.809 397082692 902041 45 1 41 0 SRX2752464, SRX2752463 Unrestricted 0.0 Metagenome 3300011220 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00107 Weill Cornell Medical College 3300011220 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.74 -73.86 36681961 58583 14 0 24 1 SRX822095 0.0 Metagenome 3300005744 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS842 Marine Biological Laboratory 3300005744 Metagenome Analysis Ray 2.3.1 kmer size 31 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow marine hydrothermal vent 18.375164 -81.797067 6.26 26859940 33289 5 0 6 0 0.0 Metagenome 3300031892 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2 DOE Joint Genome Institute (JGI) 3300031892 Metagenome Analysis spades v. 3.12.0 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Bulk soil soil 39.6475 -79.9369 1152269571 2964388 940 10 1764 30 SRX5809465 Unrestricted 7.68 Metagenome 3300001909 *Microbiome Permanent Draft Contaminated subsurface sediment microbial communities from Dusseldorf, Germany, analyzing toluene degradation Contaminated subsurface sediment microbial communities from Dusseldorf, Germany, analyzing toluene degradation - Fos_Dus_82 3300001909 Metagenome Analysis de novo assembly algorithm of CLC Genomics Workbench released by JGI data releasing policy No Yes emnabouhajja@gmail.com Emna Bouhajja No Environmental Terrestrial Sediment Geologic Unclassified Contaminated subsurface sediment 51.2166667 6.46 35287 41 0 0 0 0 0.0 Metagenome 3300035391 *Microbiome Permanent Draft Marine sediment microbial community from Mar Menor, Spain Marine sediment microbial community from Mar Menor, Spain - M73 FISABIO - Public Health 3300035391 Metagenome Analysis Metaspades v. 3.13.1 released by JGI data releasing policy No Yes borja.aldeguer@ua.es Borja Aldeguer No Environmental Aquatic Coastal Marine Sediment Marine sediment 37.67303698 -0.78374087 149630683 315995 54 4 129 6 0.0 Metagenome 3300024906 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 80_HOW10 (SPAdes) DOE Joint Genome Institute (JGI) 3300024906 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 35525675 55261 24 3 31 6 SRX2721064 Unrestricted 0.0 Metagenome 3300014239 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 233_L4_2014-7-2 San Diego State University 3300014239 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 1013629 3957 17 7 31 22 0.0 Metagenome 3300013110 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 234m, 250-2.7um, replicate b Georgia Genomics Facility 3300013110 Metagenome Analysis IDBA 1.1.1 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 208153343 260427 135 82 169 102 0.0 Metagenome 3300002742 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE17-B DOE Joint Genome Institute (JGI) 3300002742 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.32 244327 756 18 7 30 11 SRX1991450 Unrestricted 0.0 Metagenome 3300002360 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 02JUN2010 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002360 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 30665124 78159 66 26 127 63 SRX1988690 Unrestricted 0.0 Metagenome 3300035509 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver small intestine microbial communities from Maple Ridge, British Columbia, Canada - Beaver4Small.Intestine1 DOE Joint Genome Institute (JGI) 3300035509 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Small intestine Digestive system Unclassified small intestine 49.18 -122.54 1995291566 2660636 11 14 44 40 SRX8345948 Unrestricted 6.35 Metagenome 3300032736 *Microbiome Permanent Draft Meromitic Lake A Freshwater microbial communities from meromitic lake A, Ellesmere Island, Canada - Sample 14m Laval University 3300032736 Metagenome Analysis Megahit v. 1.0.5 released by JGI data releasing policy Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 82.99445 -75.443367 755054298 1342123 298 15 556 28 0.0 Metagenome 3300012555 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100727 University of Pennsylvania 3300012555 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 10637145 24803 42 9 79 27 SRX756123 0.0 Metagenome 3300021563 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-11-12_MG DOE Joint Genome Institute (JGI) 3300021563 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.0114 -110.5956 35541007 102672 61 1 118 0 SRX3982314 Unrestricted 46.64 Metagenome 3300030515 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - Or.Sf.rz (v2) (version 3) DOE Joint Genome Institute (JGI) 3300030515 Metagenome Analysis spades v. 3.12.0 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.7658 -100.163 681601678 1589345 916 109 1554 190 SRX2124703 Unrestricted 0.0 Metagenome 3300011900 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00612 Weill Cornell Medical College 3300011900 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.8 -73.93 56843253 83476 38 0 52 0 SRX822579 0.0 Metagenome 3300038307 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI152_2019_jun_120m DOE Joint Genome Institute (JGI) 3300038307 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 301263347 636688 246 22 399 53 SRX9402808 Unrestricted 11.44 Metagenome 3300050336 *Microbiome Permanent Draft American moose and American beaver microbial community from Toronto, Canada American moose rumen microbial community from Toronto, Canada - MR-PH University of Toronto 3300050336 Metagenome Analysis Custom JGI assembly. These are public NCBI metagenomes erroneously loaded as private. Galina Ovchinnikova Yes Yes camillaln@gmail.com Camilla Nesb? No Host-associated Mammals Stomach Digestive system Rumen American moose rumen 43.66 -79.4 361934211 516158 308 0 387 0 SRX13466128 0.0 Metagenome 2007309001 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring planktonic communities from Yellowstone Bath Hot Springs, Wyoming, USA DOE Joint Genome Institute (JGI) 2007309001 Metagenome Analysis Plankton collected from outflow channel No Yes binskeep@montana.edu, dmead@varigenbio.com William Inskeep, David Mead Yes 23653623 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.560318 -110.8338344 9.3 20451936 29804 12 0 11 0 Unrestricted 0.0 Metagenome 3300004230 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 76_LOW10 DOE Joint Genome Institute (JGI) 3300004230 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 67693773 154856 41 0 63 0 SRX2720798 Unrestricted 0.0 Metagenome 3300045510 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Cordillera ecozone, Canada - Lake 13-587 Genome Quebec 3300045510 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 60.450307 -134.265322 605249511 1329385 242 50 373 71 0.0 Metagenome 3300003119 *Microbiome Permanent Draft Continuous culture Bioreactor microbial community inoculated with sediment from German Wadden Sea Bioreactor microbial community inoculated from the Wadden Sea, Germany - 185 days of incubation Bielefeld University, Max Planck Institute for Marine Microbiology 3300003119 Metagenome Analysis MetaVelvet v. v0.3 Made public because these are downloaded from Genbank No Yes mstrous@mpi-bremen.de Marc Strous Yes 23227024 Engineered Bioreactor Marine sediment inoculum Continuous culture Unclassified Continuous culture Bioreactor 53.273446 5.347795 12816875 20939 9 0 23 0 0.0 Metagenome 3300012369 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100243 University of Pennsylvania 3300012369 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 2244023 5884 12 0 14 0 SRX756658 0.0 Metagenome 3300024226 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 81D DOE Joint Genome Institute (JGI) 3300024226 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 233339974 543371 143 21 256 30 SRX4474036 Unrestricted 26.02 Metagenome 3300049440 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 soil DOE Joint Genome Institute (JGI) 3300049440 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121529 -123.27034 4.96 1285381437 2005977 387 15 618 27 Unrestricted 13.59 Metagenome 3300027213 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027213 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2327 -123.9168 137337129 321270 196 23 291 45 SRX2753610 Unrestricted 0.0 Metagenome 3300043762 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Para, Brazil - F24 DOE Joint Genome Institute (JGI) 3300043762 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -2.855 -54.9571 853173645 2152800 354 22 689 28 Unrestricted 8.94 Metagenome 3300043340 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-447 Genome Quebec 3300043340 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 53.089241 -107.236949 1789474931 3988475 802 227 1427 422 0.0 Metagenome 3300071065 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_010-M-20200720-COMP-DNA1 3300071065 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 2817416 9733 42 3 68 3 0.0 Metagenome 3300060442 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210609_13_05 DOE Joint Genome Institute (JGI) 3300060442 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 471721574 689156 217 158 280 222 Unrestricted 44.06 Metagenome 3300002188 *Microbiome Permanent Draft Soil-wheat microbial communities from Canadian soil - Hydroxyproline Soil-wheat microbial communities from Ontario, Canada - Hydroxyproline 3300002188 Metagenome Analysis released by JGI data releasing policy No Yes finan@mcmaster.ca Turlough Finan No Environmental Terrestrial Unclassified Soil Agricultural land 43.64083333 -80.40972222 7.4 263801 245 0 0 0 0 0.0 Metagenome 3300044255 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 391-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044255 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9906 -107.0613 445236854 1229478 529 45 963 71 Unrestricted 7.55 Metagenome 2228664024 *Microbiome Permanent Draft Pygmy loris fecal microbial communities from DaWei mountain, Ping Bian, China Pygmy loris fecal microbial communities from DaWei mountain, Ping Bian, China - WFH Chinese Academy of Sciences 2228664024 Metagenome Analysis released per JGI data release policy No Yes xubo128028@163.com Bo Xu No Host-associated Mammals Large intestine Digestive system Fecal Pygmy loris fecal 22.910178 103.700388 27164731 72135 327 0 211 0 0.0 Metagenome 7000000146 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human saliva microbial communities from NIH, USA - visit 1, subject 763961826 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000146 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human 39.0042816 -77.1012173 41896612 81925 0 0 0 0 0.0 Metagenome 3300070714 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lajas Experimental Station, Puerto Rico, USA - LAJA_005-M-20171129-COMP-DNA1 3300070714 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 27762049 85079 53 13 126 16 0.0 Metagenome 3300026515 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A DOE Joint Genome Institute (JGI) 3300026515 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 256309543 649584 223 32 395 56 SRX4802253 Unrestricted 9.49 Metagenome 3300012602 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100635 University of Pennsylvania 3300012602 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 18995405 40932 12 0 18 0 SRX756459 0.0 Metagenome 3300071018 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_044-M-20190619-COMP-DNA1 3300071018 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 3572089 11955 44 5 86 5 0.0 Metagenome 3300015604 *Microbiome Permanent Draft Wastewater microbial communities from the domestic sewers Wastewater microbial communities from domestic sewers in Singapore - Site A Nov Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300015604 Metagenome Analysis CLC workbench released by JGI data releasing policy No Yes erinscm@nus.edu.sg Charmaine Ng No Engineered Wastewater Unclassified Sewage Unclassified Wastewater 1.28362 103.859825 136071343 181159 24 0 22 0 0.0 Metagenome 3300008147 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763961826 replicate 1 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008147 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 130104672 183977 89 0 105 1 0.0 Metagenome 3300004882 *Microbiome Permanent Draft Ecklonia radiata associated microbial communities from Long Bay, Malabar Australia Ecklonia radiata associated microbial communities from Long Bay, Malabar Australia B1 University of New South Wales 3300004882 Metagenome Analysis idba-ud released per JGI data release policy Yes Yes z.qiu@student.unsw.edu.au Zhiguang Qiu No Host-associated Algae Ectosymbionts Red algae Unclassified Ecklonia radiata associated -33.965 151.253 40934480 89719 69 14 131 29 0.0 Metagenome 3300042539 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Sep2008D10-rr0084 DOE Joint Genome Institute (JGI) 3300042539 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1054835384 1575838 409 41 528 69 Unrestricted 17.41 Metagenome 3300011877 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01075 Weill Cornell Medical College 3300011877 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.69 -73.98 54786545 74005 16 0 27 0 SRX823030 0.0 Metagenome 3300013385 *Microbiome Permanent Draft Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada - high-flow bush Genome Quebec 3300013385 Metagenome Analysis MEGAN released by JGI data releasing policy No Yes smurdock@uvic.ca Sheryl Murdock No Environmental Aquatic Hydrothermal vents Marine Tubeworm bush High-flow tubeworm bush 48.1775 -129.336667 130781816 397358 259 27 471 63 0.0 Metagenome 3300014098 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Thailand to Iowa, USA - T3 Iowa State University 3300014098 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 1248490 2377 0 2 0 0 SRX1150300 0.0 Metagenome 3300013557 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100422 University of Pennsylvania 3300013557 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 876768 2834 8 0 16 0 SRX756576 0.0 Metagenome 3300049768 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G13_B_4_drought DOE Joint Genome Institute (JGI) 3300049768 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 123430178 305194 324 15 627 30 Unrestricted 11.04 Metagenome 3300010942 *Microbiome Permanent Draft Wastewater viral communities and vesicles from water purifying plant in Alicante,Spain Wastewater viral communities and vesicles from water purifying plant in Alicante,Spain - replicate C3 Autonomous University of Barcelona 3300010942 Metagenome Analysis SPAdes-3.8.1-Linux released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Engineered Wastewater Unclassified Industrial wastewater Unclassified wastewater 38.34 -0.48 48075053 107696 5 0 2 0 0.0 Metagenome 3300038682 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - CAR1 Michigan State University 3300038682 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 31.0 -117.0 30100253 76476 7 0 18 0 0.0 Metagenome 3300001582 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP1788 DOE Joint Genome Institute (JGI) 3300001582 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 9.22 -163.53 50860644 127157 93 0 178 1 SRX1982357 Unrestricted 0.0 Metagenome 3300025011 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado, USA - Groundwater D2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025011 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 26083755 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.53 -107.78 252788029 420576 200 1 308 1 SRX764829, SRX1668433 Unrestricted 0.0 Metagenome 3300014577 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 209_D1_2014-6-6 San Diego State University 3300014577 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 2869928 9366 10 4 16 5 0.0 Metagenome 3300045157 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_1_D DOE Joint Genome Institute (JGI) 3300045157 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 163279549 192912 100 1 112 2 Unrestricted 140.6 Metagenome 3300041750 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_442 MetaG AgResearch, New Zealand, Mosgeil 3300041750 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1198883125 2287918 220 18 842 33 0.0 Metagenome 3300049715 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Para, Brazil - FS34 DOE Joint Genome Institute (JGI) 3300049715 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -3.3 -54.8907 110969213 282264 135 4 250 4 Restricted 0.0 Metagenome 3300048118 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_130424.NP1 DOE Joint Genome Institute (JGI) 3300048118 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 559574009 1153842 340 60 494 109 Unrestricted 17.09 Metagenome 7000000693 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 158458797 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000693 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 87038629 173933 0 0 0 0 0.0 Metagenome 3300029079 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 181_4M Beijing Genomics Institute (BGI) 3300029079 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 39232395 56154 38 2 41 0 ERX490979 0.0 Metagenome 3300042820 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122 NMDC pilot DOE Joint Genome Institute (JGI) 3300042820 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.920406 -106.94828662 898204999 2410801 554 25 1054 34 SRX5354615 0.0 Metagenome 3300005735 *Microbiome Permanent Draft Microbial degradation of oil Seawater microbial communities from Vineyard Sound, MA, USA - control T0 University of Wisconsin, Madison 3300005735 Metagenome Analysis velvet released per JGI data release policy No Yes rsimiste@haverford.edu, rlsimister@gmail.com rachel simister, Rachel Simister No Environmental Aquatic Unclassified Marine Unclassified marine 41.4417 -70.7744 35125879 68780 92 1 133 0 0.0 Metagenome 3300033993 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037 DOE Joint Genome Institute (JGI) 3300033993 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1098533657 2162892 453 61 773 126 SRX7621642 Unrestricted 10.94 Metagenome 3300048822 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 S2 1-5 DOE Joint Genome Institute (JGI) 3300048822 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3532 19.0474 622616925 974476 204 10 358 15 Restricted 13.0 Metagenome 3300008468 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Sea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC10T Shell Corporation 3300008468 Metagenome Analysis idba_ud Released on PI's request No Yes ebalsop@lbl.gov, nicolas.tsesmetzis@shell.com Eric Alsop, Nicolas Tsesmetzis No Environmental Aquatic Cold seeps Marine Sediment Sediment 27.4 -93.2 422857366 1470248 478 1 973 6 0.0 Metagenome 3300040366 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Mid-Atlantic, VA, USA - BLAN_004-M-20170713-COMP-DNA1 Battelle Memorial Institute 3300040366 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Farm Terrestrial soil 39.06026 -78.07164 6309254 17364 33 4 59 6 0.0 Metagenome 3300024950 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 103_HOW12 (SPAdes) DOE Joint Genome Institute (JGI) 3300024950 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 80072315 126178 36 0 46 0 SRX2721176 Unrestricted 0.0 Metagenome 3300055140 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_106-s41 day 182 DOE Joint Genome Institute (JGI) 3300055140 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1473440804 2185139 266 205 373 234 Unrestricted 45.16 Metagenome 3300070554 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_044-M-20190617-COMP-DNA1 Battelle Memorial Institute 3300070554 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 32.952869 -87.397606 5.04-5.72 7634363 24671 48 3 75 3 0.0 Metagenome 2077657019 *Microbiome Permanent Draft Marine sediment archaeal communities from Santa Barbara Basin, CA, that are anaerobic and methane-oxidizing Marine sediment archaeal communities from Santa Barbara Basin, CA, that are methane-oxidizing, sample 3-6 cm DOE Joint Genome Institute (JGI) 2077657019 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Sediment Marine sediment 34.21 -119.5 58173635 122543 0 0 0 0 Unrestricted 0.0 Metagenome 3300028383 *Microbiome Permanent Draft Bras del Port September 2017 Non-marine hypersaline water viral communities from Bras del Port saltern ponds, Alicante, Spain - CO71_September 2016 University of Alicante 3300028383 Metagenome Analysis IDBA v. 1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Mar?a Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline water 38.1904 -0.5948 40675776 129551 0 0 1 0 0.0 Metagenome 3300008415 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765013792 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008415 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 63663195 95205 54 0 85 0 0.0 Metagenome 3300011956 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00273 Weill Cornell Medical College 3300011956 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.98 39301300 63729 21 0 25 0 SRX822246 0.0 Metagenome 3300026755 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01K5-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026755 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 17624739 59838 80 3 146 4 SRX2576207 Unrestricted 0.0 Metagenome 3300020151 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erken, Sweden Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1 SciLifeLab 3300020151 Metagenome Analysis megahit v. 1.0.3 released per PI No Yes rhiannon.mondav@gmail.com Rhiannon Mondav No Environmental Aquatic Lake Freshwater Unclassified Freshwater 59.83763399 18.6203826 679636302 1396484 436 192 714 310 0.0 Metagenome 3300044810 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_21CS DOE Joint Genome Institute (JGI) 3300044810 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.3689 -106.1051 912233316 1533726 273 51 444 64 SRX20649986 Unrestricted 15.79 Metagenome 3300003354 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS DOE Joint Genome Institute (JGI) 3300003354 Metagenome Analysis Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.9082 -79.0499 265322457 472496 136 6 233 11 SRX2562212 Unrestricted 0.0 Metagenome 3300040017 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 050_R1_022417 University of Maryland 3300040017 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.97074722 25.70374444 15432516 24160 21 4 21 7 0.0 Metagenome 3300013717 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01121 Weill Cornell Medical College 3300013717 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.88 22021036 33710 11 1 15 1 SRX823076 0.0 Metagenome 3300022805 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R5 Version 2 University of New South Wales 3300022805 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au; z5119396@unsw.edu.au Holly Bennett; Viet Hung Nguyen No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 102099247 179593 66 2 105 2 0.0 Metagenome 3300031509 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60 DOE Joint Genome Institute (JGI) 3300031509 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5341 -110.798 267456757 597246 157 0 214 1 SRX5650955 Unrestricted 181.27 Metagenome 3300002449 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Microcerotermes parvus P3 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Mp193 P3 DOE Joint Genome Institute (JGI) 3300002449 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes karen.rossmassler@gmail.com, brune@mpi-marburg.mpg.de Karen Rossmassler, Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut -4.7 11.83 712348561 1431701 486 4 1182 7 SRX3327965 Unrestricted 0.0 Metagenome 3300070430 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Mountain Lake Biological Station, Virginia, USA - MLBS_067-M-20180612-COMP-DNA1 3300070430 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 29629114 92564 80 8 143 10 0.0 Metagenome 3300001744 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Olavius algarvensis symbiont microbial communities from Tuscany, Italy - Type A ELBA extract 2 DOE Joint Genome Institute (JGI) 3300001744 Metagenome Analysis Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 42.8072 10.1411 369374462 1083498 14 7 20 4 SRX2554371 Unrestricted 0.0 Metagenome 3300042485 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME11Feb2005S-rr0421 DOE Joint Genome Institute (JGI) 3300042485 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1007134793 1539522 274 52 370 66 Unrestricted 24.78 Metagenome 3300046397 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA070-BCT DOE Joint Genome Institute (JGI) 3300046397 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6779 -83.4786 350732838 914357 276 30 466 56 Unrestricted 8.74 Metagenome 3300005909 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKF DOE Joint Genome Institute (JGI) 3300005909 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli, Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 186558379 430345 156 4 282 7 SRX2746696 Unrestricted 0.0 Metagenome 3300031391 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #437 DOE Joint Genome Institute (JGI) 3300031391 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 321780746 546378 99 21 117 41 SRX5649476 Unrestricted 42.88 Metagenome 3300000968 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY80 J. Craig Venter Institute (JCVI) 3300000968 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 532793868 1962331 86 50 247 85 0.0 Metagenome 3300002571 *Microbiome Permanent Draft Ridgeia piscesae microbial communities from Northeast Pacific Ocean hydrothermal vents Host-associated microbial community of the tubeworm Ridgeia piscesae from hydrothermal vents Sample -index 14 (Axial LF) Canada's Michael Smith Genome Sciences Centre 3300002571 Metagenome Analysis released per JGI data release policy No Yes maepz@hotmail.com Maeva Perez, maeva perez No Host-associated Annelida Trophosome Intracellular endosymbionts Unclassified Ridgeia piscesae 47.933377 -129.966914 233449720 625911 2 2 9 3 0.0 Metagenome 3300049369 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC37 DOE Joint Genome Institute (JGI) 3300049369 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 69698972 194011 220 6 413 8 Unrestricted 32.29 Metagenome 3300000915 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 E3 DOE Joint Genome Institute (JGI) 3300000915 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 49642699 89221 63 0 90 0 SRX3311652 Unrestricted 0.0 Metagenome 3300012440 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100552 University of Pennsylvania 3300012440 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9170283 19375 24 2 36 7 SRX756202 0.0 Metagenome 3300005229 *Microbiome Permanent Draft Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich - 47s-100 University of Cincinnati 3300005229 Metagenome Analysis Velvet v. 0.7.57 released per JGI data release policy No Yes rlamendella@lbl.gov Regina Lamendella No Environmental Aquatic Groundwater Freshwater Contaminated Groundwater 40.0 -74.5 0 0 0 0 0 0 0.0 Metagenome 3300027034 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027034 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 107605937 299165 167 24 331 33 SRX3311935 Unrestricted 0.0 Metagenome 3300025563 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqC_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025563 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.197227 -122.010124 215514192 432087 226 2 400 5 SRX7142758 Unrestricted 0.0 Metagenome 3300020282 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX556074-ERR599169) CEA Genoscope 3300020282 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -12.9488 -96.0293 348939654 851714 162 7 310 9 0.0 Metagenome 3300036830 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in California, United States - CAS_4 DOE Joint Genome Institute (JGI) 3300036830 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil 37.0 -122.2 2345390377 3719576 585 61 1006 97 SRX8385157 Unrestricted 11.79 Metagenome 3300043623 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 222-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043623 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.962 -107.0301 655378905 1695626 414 6 777 7 Unrestricted 6.6 Metagenome 3300025327 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025327 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 2339397471 4683727 1403 5 2356 12 SRX1990954 Unrestricted 0.0 Metagenome 3300031160 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_2 DOE Joint Genome Institute (JGI) 3300031160 Metagenome Analysis spades v. 3.12.0 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 152072335 183726 154 1 175 0 SRX5661306 Unrestricted 140.79 Metagenome 3300027811 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT92D227 HiSeq DOE Joint Genome Institute (JGI) 3300027811 Metagenome Analysis spades v. 3.11.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9888 -108.3994 879458664 1898824 635 8 1190 16 SRX5341361, SRX5341360 Unrestricted 0.0 Metagenome 3300027537 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027537 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 262695762 684718 222 49 399 75 SRX3312027 Unrestricted 0.0 Metagenome 3300003085 *Microbiome Permanent Draft Acid mine drainage microbial communities from Carnoules, Gard, France Acid Mine Drainage microbial communities from Carnoules, Gard, France, bin 5 CEA Genoscope 3300003085 Metagenome Analysis Made public because these are downloaded from Genbank No Yes ipagani@lbl.gov Pelletier,E., Ionna Pagani No Environmental Aquatic Groundwater Freshwater Contaminated Acid mine drainage 43.303 6.188 2794465 3127 1 0 1 0 0.0 Metagenome 3300038755 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Sweden Activated sludge microbial communities from sewage treatment plant in Sweden - SWESTP6 - Uppsala-surplus 107 University of Gothenburg 3300038755 Metagenome Analysis Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified activated sludge 59.844519 17.659844 143556932 253442 154 9 272 8 0.0 Metagenome 3300039158 *Microbiome Permanent Draft Lake microbial communities from Canada Sediment microbial communities from the Boreal Shield Ecozone, Canada - top sediment 06-126 metaSPAdes Genome Quebec 3300039158 Metagenome Analysis SPAdes v. 3.11.1 metaSPAdes mode released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Sediment 48.99124 -74.02811 1276807819 3420326 455 16 872 27 0.0 Metagenome 3300036383 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T100 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036383 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 142710858 208925 47 3 67 7 SRX8128128, SRX8128127 Unrestricted 0.0 Metagenome 3300011642 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00489 Weill Cornell Medical College 3300011642 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.83 -73.88 21932151 44184 20 0 41 0 SRX822458 0.0 Metagenome 3300028529 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_05JUN2017_LD1 DOE Joint Genome Institute (JGI) 3300028529 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 70459342 128040 4 38 9 89 SRX5345790 Unrestricted 22.15 Metagenome 3300008263 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-53-LTR University of Michigan 3300008263 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7635 -83.3309 8.835 550341544 796992 85 48 138 102 0.0 Metagenome 3300019746 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLC_4-5_MG DOE Joint Genome Institute (JGI) 3300019746 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 141842999 341316 189 11 426 17 Unrestricted 3.74 Metagenome 3300043049 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5SP15 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043049 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 36868442 90721 66 2 108 4 SRX8379444 Unrestricted 37.09 Metagenome 3300049644 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MG_030718 DOE Joint Genome Institute (JGI) 3300049644 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 557425344 920572 762 3 1097 3 Unrestricted 20.68 Metagenome 3300029370 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 081_4_27_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029370 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 141757611 180699 196 0 265 0 0.0 Metagenome 3300034172 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS DOE Joint Genome Institute (JGI) 3300034172 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Sub-biocrust Soil Unclassified sub-biocrust soil 34.7856 -115.66 334051833 740145 367 11 723 4 SRX7615528 Unrestricted 9.95 Metagenome 3300009954 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 6 Autonomous University of Barcelona 3300009954 Metagenome Analysis SPAdes-3.8.1-Linux released per JGI data release policy Yes Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 5865750 10316 3 0 3 0 0.0 Metagenome 3300003173 *Microbiome Permanent Draft Whitefly associated endosymbiont microbial communities from Neve Yaar, Israel Whitefly Bemisia tabaci associated secondary symbiont microbial communities from Neve Yaar, Israel - sample Cardinium_whitefly 3300003173 Metagenome Analysis released by JGI data releasing policy No Yes itaiopa6@gmail.com Itai Opatovsky No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Whitefly Bemisia tabaci associated 32.708101 35.179264 357472 338 1 0 1 0 0.0 Metagenome 3300070645 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_005-O-20160824-COMP-DNA1 3300070645 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 325430795 789123 185 5 390 14 0.0 Metagenome 3300007641 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit number 3 of subject 159227541 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007641 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 133576380 172896 139 0 190 0 0.0 Metagenome 3300040514 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Mid-Atlantic, VA, USA - SCBI_004-M-20170717-COMP-DNA1 Battelle Memorial Institute 3300040514 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89292 -78.1395 3010158 9198 26 3 55 6 0.0 Metagenome 3300050548 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf microbial communities from Olympic Peninsula, Washington, USA - D0_SEK1_5 DOE Joint Genome Institute (JGI) 3300050548 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Alder tree leaf 48.165 -124.244 130315325 181362 8 6 18 7 Unrestricted 96.48 Metagenome 3300000362 *Microbiome Draft Alkaline sediment microbial communities from Soda lakes and Soda Solonchak soils Alkaline sediment microbial communities from Cock Soda Lake, Kulunda Steppe, Russia - 1KL_011_SED DOE Joint Genome Institute (JGI) 3300000362 Metagenome Analysis released based on JGI ITS Yes Yes g.muijzer@uva.nl Gerard Muyzer No Environmental Aquatic Alkaline Non-marine Saline and Alkaline Sediment Alkaline sediment 52.06 79.09 641318510 1394818 695 15 1228 27 Unrestricted 0.0 Metagenome 3300000740 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 16OCT2007 epilimnion DOE Joint Genome Institute (JGI) 3300000740 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300056731 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.18W.12 SIP fraction DOE Joint Genome Institute (JGI) 3300056731 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 179826707 330792 136 50 205 97 Unrestricted 10.82 Metagenome 3300012635 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100376 University of Pennsylvania 3300012635 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 28627738 54901 36 2 73 6 SRX756281 0.0 Metagenome 3300044996 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Towuti Lake, South Sulawesi, Indonesia - Towuti_150m_2014 DOE Joint Genome Institute (JGI) 3300044996 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.7 121.4 1064762980 1895693 721 11 1197 19 Unrestricted 14.16 Metagenome 3300029245 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019817-21 Beijing Genomics Institute (BGI) 3300029245 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 209666752 258378 173 0 269 0 0.0 Metagenome 3300069539 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Taiga, AK, USA - HEAL_025-O-20160803-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069539 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.87569 -149.21334 5871062 17403 40 7 82 6 0.0 Metagenome 3300039393 *Microbiome Permanent Draft Terrestrial soil microbial communities from rice fields in China Terrestrial soil microbial communities from rice field in Guangzhou, China - 27GGZ Shanghai Personal Biotechnology Co., Ltd. 3300039393 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes xjzhang68@sjtu.edu.cn Xiaojun Zhang No Environmental Terrestrial Paddy field/soil Soil Unclassified Terrestrial soil 113.25 23.13 3748130257 9167862 1728 34 3291 39 0.0 Metagenome 3300050135 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim3 5-9 DOE Joint Genome Institute (JGI) 3300050135 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.352963 19.04747 545865301 817777 135 32 239 37 Restricted 13.47 Metagenome 3300004153 *Microbiome Permanent Draft Soil microbial communities from Mediterranean grasslands, California Grasslands soil microbial communities from Hopland, California, USA (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300004153 Metagenome Analysis MEGAHIT v. 0.1.3-bugfix2 Yes Yes elbrodie@lbl.gov, ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 38.99297339 -123.0674491 4558805344 13616653 2427 242 4587 591 SRX1978726, SRX1978725, SRX1978736, SRX1978728, SRX1978727, SRX1978729, SRX1978731, SRX1978730, SRX1978733, SRX1978732, SRX1978735, SRX1978724, SRX2041382, SRX1978734 Unrestricted 0.0 Metagenome 3300037257 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - IV_Fen_F1 DOE Joint Genome Institute (JGI) 3300037257 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 461146241 1290052 725 68 1255 106 SRX8398203 Unrestricted 5.8 Metagenome 3300014074 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Honduras to Iowa, USA - H12 Iowa State University 3300014074 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 840959 1634 0 3 0 0 SRX1150283 0.0 Metagenome 3300009650 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-061 DOE Joint Genome Institute (JGI) 3300009650 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Permafrost soil 68.6137 -149.3144 408747743 858820 533 7 988 17 SRX2755647 Unrestricted 0.0 Metagenome 3300022832 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1574 DOE Joint Genome Institute (JGI) 3300022832 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 136667441 271789 85 33 104 45 SRX4397711 Unrestricted 19.26 Metagenome 3300029692 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37105 Beijing Genomics Institute (BGI) 3300029692 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 162335690 217011 138 1 210 0 0.0 Metagenome 3300027465 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK03-A (SPAdes) DOE Joint Genome Institute (JGI) 3300027465 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 30848037 102307 106 9 176 13 SRX2575242 Unrestricted 0.0 Metagenome 3300001615 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF020 DOE Joint Genome Institute (JGI) 3300001615 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 1199291 3385 15 2 28 4 SRX2014337 Unrestricted 0.0 Metagenome 3300041586 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Ephyra Lake #996 DOE Joint Genome Institute (JGI) 3300041586 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5765 78.2339 303491391 616927 288 62 500 98 SRX10085950 Unrestricted 15.66 Metagenome 3300025834 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - lysozymeSSSS metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025834 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca Ramunas Stepanauskas; Peter Dunfield No Environmental Aquatic Ice Freshwater Glacier Glacier valley 81.017 -81.583 585805720 1104188 392 8 547 12 SRX3006941 Unrestricted 0.0 Metagenome 3300038568 *Microbiome Permanent Draft Uranium tailings and control soil microbial communities from Southeast China Uranium tailings soil microbial communities from Southeast China - SML3 Qiqihar University 3300038568 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Contaminated Soil Uranium contaminated Uranium tailings soil 26415154 59621 38 22 89 26 SRX1093191 0.0 Metagenome 3300069485 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_002-M-20160719-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069485 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 39204399 124497 145 6 245 10 0.0 Metagenome 3300001668 *Microbiome Permanent Draft Alviniconcha endosymbiont microbial communities from the Eastern Lau Spreading center hydrothermal vents, Pacific Ocean Epsilon_v2 Harvard University 3300001668 Metagenome Analysis released per JGI data release policy No Yes rbeinart@fas.harvard.edu Roxanne Beinart No Host-associated Mollusca Gills Respiratory system Intracellular Alviniconcha endosymbiont -20.05361 -176.13333 2007484 2254 1 1 1 2 0.0 Metagenome 3300027418 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027418 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 242211544 524197 193 13 280 15 SRX2753582 Unrestricted 20.31 Metagenome 3300014790 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS50_24 University of Hohenheim 3300014790 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 121400157 200966 100 0 169 0 0.0 Metagenome 3300038515 *Microbiome Permanent Draft Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China - SA5 v2 Sun Yat-Sen University 3300038515 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy No Yes yuxiaoli92@163.com Xiaoli Yu No Environmental Aquatic Intertidal zone Marine Mangrove sediment mangrove sediment 23.45 116.43 84925554 114307 54 10 92 14 0.0 Metagenome 3300030307 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from adenoma patient in Toronto, Canada - MG100188 University of Michigan 3300030307 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 43.65 -79.38 7869835 13481 32 0 44 0 0.0 Metagenome 3300006429 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 763435843 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300006429 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 No Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 12259470 18061 12 0 21 3 SRX025201 0.0 Metagenome 3300070292 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Florida, USA - DSNY_044-M-20160712-COMP-DNA3 3300070292 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 5408180 16762 17 1 51 2 0.0 Metagenome 3300006854 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Bulk soil microbial communities from a Populus tree surrounding site in Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4 DOE Joint Genome Institute (JGI) 3300006854 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Environmental Terrestrial Tree plantation Soil Unclassified Bulk soil 35.8444 -83.9599 6678887127 17854901 3874 110 6615 182 SRX2843299 Unrestricted 0.0 Metagenome 3300037092 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 40-44 DOE Joint Genome Institute (JGI) 3300037092 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 410488066 676223 138 3 226 4 SRX8138152 Unrestricted 19.32 Metagenome 3300001409 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 53-1 deep-072012 DOE Joint Genome Institute (JGI) 3300001409 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 37572941 93424 74 15 142 17 SRX1987652 Unrestricted 0.0 Metagenome 7000000334 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 764143897 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000334 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 162323102 245092 0 0 0 0 0.0 Metagenome 3300035388 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Marine sediment microbial communities from Garden Banks mud volcano, Gulf of Mexico, United States - st louis1 DOE Joint Genome Institute (JGI) 3300035388 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Mud volcano Marine Sediment sediment 27.5 -92.5 129616635 166499 103 0 131 0 SRX8342973 Unrestricted 98.59 Metagenome 3300005702 *Microbiome Permanent Draft Rangifer tarandus platyrhynchus rumen microbial communities from Svalbard, Norway Rangifer tarandus platyrhynchus rumen microbial communities from Svalbard, Norway - Sample 549 Macrogen 3300005702 Metagenome Analysis Newbler No Yes phillip.b.pope@gmail.com Phillip Pope, Phil B. Pope Yes 22701672 Host-associated Mammals Stomach Digestive system Rumen Rangifer tarandus platyrhynchus rumen 78.2166667 15.6333333 1150694 953 0 0 0 0 0.0 Metagenome 3300026682 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_1_29 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026682 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 14232479 28619 33 4 69 5 SRX2924864 Unrestricted 0.0 Metagenome 3300049060 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - G6_A_BS (version 2) DOE Joint Genome Institute (JGI) 3300049060 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 182221340 407161 512 9 1117 9 Unrestricted 0.0 Metagenome 3300040321 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_005-M-20170626-COMP-DNA1 Battelle Memorial Institute 3300040321 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 5008631 15156 31 0 48 0 0.0 Metagenome 3300002704 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB DOE Joint Genome Institute (JGI) 3300002704 Metagenome Analysis Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Unclassified Roots Unclassified Arabidopsis root 35.9082 -79.0499 37601042 65406 75 0 100 0 SRX1991095 Unrestricted 0.0 Metagenome 3300011400 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT133_2 DOE Joint Genome Institute (JGI) 3300011400 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8897 -106.908 167647714 414103 261 26 536 51 SRX3368461 Unrestricted 0.0 Metagenome 3300003766 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus triangulatus BAHAMAS.2 DOE Joint Genome Institute (JGI) 3300003766 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 20770946 36218 7 5 8 5 SRX3340581 Unrestricted 0.0 Metagenome 3300056857 *Microbiome Permanent Draft Mealworm larvae gut microbial communities from Newark, Delaware, USA Mealworm larvae gut microbial communities from Newark, Delaware, USA - Gut-D30_PS (version 2) DOE Joint Genome Institute (JGI) 3300056857 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes blenner@udel.edu Mark Blenner No Host-associated Arthropoda: Insects Gut Larva Unclassified Mealworm larvae gut 39.663708 -75.755838 216057317 213117 239 3 257 4 Unrestricted 0.0 Metagenome 3300041058 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - AD8 IDBA-UD 100x Baseclear 3300041058 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 107342776 182502 129 2 239 1 0.0 Metagenome 7000000095 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764305738 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000095 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 90743470 152094 0 0 0 0 0.0 Metagenome 3300036950 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - CEPT 26 II DOE Joint Genome Institute (JGI) 3300036950 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 570269424 1257456 733 19 1212 17 SRX8359969 Unrestricted 13.6 Metagenome 3300014536 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS58_12 University of Hohenheim 3300014536 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 79698411 130660 55 0 92 0 0.0 Metagenome 3300038626 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Realigned salt marsh sediment microbial communities from Fingringhoe Range, United Kingdom - S FRRM 3A University of York 3300038626 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Realigned salt marsh sediment 51.83015 0.9503 57101751 146805 130 0 206 0 0.0 Metagenome 3300002333 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP09-I5 3300002333 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300026809 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 47 (SPAdes) DOE Joint Genome Institute (JGI) 3300026809 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 39501656 91558 49 0 95 0 SRX1985059 Unrestricted 0.0 Metagenome 3300035206 *Microbiome Permanent Draft Seawater and sediment microbial communities from various locations Seawater microbial communities from, Arabian Sea, Indian Ocean - AMALJGI-DNA-12 DOE Joint Genome Institute (JGI) 3300035206 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bbw@princeton.edu Bess Ward No Environmental Aquatic Oceanic Marine Unclassified seawater 15.15 64.0 1249975564 2572526 883 83 1580 143 SRX8343057 Unrestricted 12.78 Metagenome 3300006445 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2 of subject 764325968 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300006445 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 4119256 12409 6 0 8 0 SRX024130 0.0 Metagenome 3300046489 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvCe-C(3) 40-44 DOE Joint Genome Institute (JGI) 3300046489 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0434 141593247 235241 108 0 174 0 Restricted 11.83 Metagenome 3300013543 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - sediment SCG86 University of British Columbia 3300013543 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Sediment Marine 239088 765 0 0 2 0 SRX143195 0.0 Metagenome 7000000703 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 763496533 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000703 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 780408 1792 0 0 0 0 SRX024919 0.0 Metagenome 3300037167 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 E3 10-14 DOE Joint Genome Institute (JGI) 3300037167 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0467 724343513 1562993 499 9 879 13 SRX8144471 Unrestricted 7.77 Metagenome 3300057048 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F1P_9_10 DOE Joint Genome Institute (JGI) 3300057048 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9544076 -81.67361068 1549366260 2377071 592 16 995 20 Unrestricted 13.01 Metagenome 3300024529 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_21 DOE Joint Genome Institute (JGI) 3300024529 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Strait Marine Unclassified seawater 49.2166667 -123.5333333 1060242506 2715312 835 59 1473 108 SRX4480233 Unrestricted 9.66 Metagenome 3300045143 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - LOSB9-9-6-19 DOE Joint Genome Institute (JGI) 3300045143 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.0986 -120.7197 653225887 1568437 753 30 1306 74 Restricted 8.82 Metagenome 3300001526 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-5cm-1A)- 1 week illumina University of Tennessee 3300001526 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 162483929 690872 761 35 1337 64 0.0 Metagenome 3300051199 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Butler, South Dakota, USA - 111_897_SD_DR_0cm_c3_T0_16O DOE Joint Genome Institute (JGI) 3300051199 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 45.27223 -97.8369 532746744 1000489 269 14 505 17 Restricted 17.63 Metagenome 3300040496 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Abby Road, Pacific Northwest, WA, USA - ABBY_023-M-20170607-COMP-DNA1 Battelle Memorial Institute 3300040496 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.76243 -122.33033 3606938 10733 27 1 51 4 0.0 Metagenome 3300009011 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG DOE Joint Genome Institute (JGI) 3300009011 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 1049653923 2141514 1801 50 3090 78 SRX3203372 Unrestricted 0.0 Metagenome 3300012792 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - DID2925_E24_Lignin MG DOE Joint Genome Institute (JGI) 3300012792 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 10282172 15310 35 0 63 0 SRX3564734 Unrestricted 0.0 Metagenome 3300039215 *Microbiome Permanent Draft Wedge-polygon permafrost microbial communities from Axel Heiberg Island, Canada Wedge-polygon permafrost microbial communities from Axel Heiberg Island, Canada - P3_Claremont McGill University 3300039215 Metagenome Analysis canu v. 1.8 released by JGI data releasing policy No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.24 -90.45 636046 1045 0 0 0 2 0.0 Metagenome 3300049499 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC30 DOE Joint Genome Institute (JGI) 3300049499 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 12099957 30671 48 3 105 0 Unrestricted 30.65 Metagenome 3300011836 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00611 Weill Cornell Medical College 3300011836 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.79 -73.94 45417935 64305 25 0 32 0 SRX822578 0.0 Metagenome 3300045696 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - C6-8-23-19 DOE Joint Genome Institute (JGI) 3300045696 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.3319 -120.423 412459465 1099121 553 62 999 112 Restricted 6.73 Metagenome 3300031250 *Microbiome Permanent Draft Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG DOE Joint Genome Institute (JGI) 3300031250 Metagenome Analysis spades v. 3.12.0 Yes Yes rbneum@uw.edu Rebecca Neumann No Host-associated Plants Rhizosphere Roots Soil rhizosphere 47.6516 -122.3045 1249288132 2835316 832 30 1372 32 SRX5787930 Unrestricted 8.8 Metagenome 3300005079 *Microbiome Permanent Draft Termite gut microbial communities from Australia Mastotermes darwiniensis gut microbial communities from Townsville, Australia - TV02 University of Queensland 3300005079 Metagenome Analysis CLC released per JGI data release policy No Yes nurdyana.abdulrahman@uqconnect.edu.au, nurdyana.abdul.rahman@sgh.com.sg Abdul Rahman, Nurdyana Abdul Rahman No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Mastotermes gut -19.280075 146.824457 818444088 1480812 67 7 123 6 0.0 Metagenome 3300004826 *Microbiome Permanent Draft Microbial communities from the Yellowstone National Park, bulk metagenomes as controls for mini-metagenomic methods Microbial communities from the Yellowstone National Park, bulk metagenomes as controls for mini-metagenomic methods - Norris Mammoth Corridor Bijah Roadside hotspring 3 Stanford University 3300004826 Metagenome Analysis SpadeV3 released per JGI data release policy No Yes brianyu@stanford.edu, brian.yu@czbiohub.or Brian Yu No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified hotspring 44.761133 -110.7309 7 34437390 65423 45 0 66 0 0.0 Metagenome 3300020037 *Microbiome Permanent Draft Freshwater viral communities from Chicago Sanitary Ship Canal, USA Freshwater viral communities from Stickney, Illinois, USA - 1 University of Illinois-Urbana Champaign 3300020037 Metagenome Analysis SPADES v3.10.1 released by JGI data releasing policy No Yes wtliu@illinois.edu Wen-Tso Liu No Environmental Aquatic River Freshwater Unclassified Freshwater 41.813611 -87.77138 424157405 981653 0 0 3 0 0.0 Metagenome 3300008153 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 158499257 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008153 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 124954814 191029 107 0 129 0 0.0 Metagenome 3300022759 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA11 Version 2 University of New South Wales 3300022759 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 33998574 52991 25 2 28 1 0.0 Metagenome 3300023184 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503 DOE Joint Genome Institute (JGI) 3300023184 Metagenome Analysis spades v. 3.11.1-check Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.95 1752763471 3137177 579 72 771 111 SRX4822628, SRX4822629 Unrestricted 24.24 Metagenome 3300048996 *Microbiome Permanent Draft Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA - CNF2WT6 DOE Joint Genome Institute (JGI) 3300048996 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sydneyg@ucr.edu Sydney Glassman No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 33.6953 -117.4713 2017954633 3385346 637 48 990 81 Unrestricted 15.27 Metagenome 3300046467 *Microbiome Permanent Draft Seawater and ice microbial communities from Arctic Ocean Seawater microbial communities from Arctic Ocean - MOSAiC PS122_418 DOE Joint Genome Institute (JGI) 3300046467 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Seawater 87.5953 94.0846 1615973438 2473468 649 257 956 333 Unrestricted 23.61 Metagenome 3300000381 *Microbiome Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Salt pond microbial community from Fremont, CA, USA - Pond A23 Liquid 1 DOE Joint Genome Institute (JGI) 3300000381 Metagenome Analysis released based on JGI ITS Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Salt pond 37.475383 -121.9729 42856762 93075 44 1 82 4 Unrestricted 0.0 Metagenome 3300037448 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - MU_080817 DOE Joint Genome Institute (JGI) 3300037448 Metagenome Analysis metaspades v. 3.13.0 Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.8784 -89.3541 440598287 1214204 501 55 863 85 SRX9382427 Unrestricted 6.06 Metagenome 3300043025 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver proximal colon microbial communities from Maple Ridge, British Columbia, Canada - Beaver6Prox.Colon1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043025 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Proximal colon proximal colon 49.18 -122.54 76227623 156304 202 14 326 29 SRX8346533 Unrestricted 38.53 Metagenome 3300010239 *Microbiome Permanent Draft Terrestrial oil reservoir microbial communities from Alaska Terrestrial oil reservoir microbial community from Kuparuk Formation, Alaska - K3 Yale Center for Genome Analysis 3300010239 Metagenome Analysis idba-ud released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis Yes 26787827 Environmental Terrestrial Unclassified Oil reservoir Unclassified produced fluid 70.4 -148.7 1368912897 6970012 1115 377 2082 895 0.0 Metagenome 3300006117 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE08Jun09 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006117 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 247127191 659394 201 67 303 102 SRX2565224 Unrestricted 0.0 Metagenome 3300018074 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2 DOE Joint Genome Institute (JGI) 3300018074 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 2 857740544 1893268 730 15 1382 25 SRX3939728 Unrestricted 5.31 Metagenome 3300020226 *Microbiome Permanent Draft Acid mine drainage microbial communities from Malanjkhand copper mine, India Acid mine drainage microbial communities from Malanjkhand copper mine, India - T5 Kmer_63 Indian Institute of Technology, kharagpur 3300020226 Metagenome Analysis Metavelvet released by JGI data releasing policy No Yes psar@hijli.iitkgp.ernet.in Pinaki Sar No Environmental Terrestrial Unclassified Soil Mine drainage sediment 21.998617 80.701317 129638503 453821 303 13 529 23 0.0 Metagenome 3300028138 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK25 DOE Joint Genome Institute (JGI) 3300028138 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 209102763 536396 297 17 489 33 SRX5245480 Unrestricted 8.16 Metagenome 3300032170 *Microbiome Permanent Draft Microbial communities from the deep biosphere Marine subsurface sediment microbial communities from Costa Rica - 1378_B04H6_32p39mbsf re-assembly Marine Biological Laboratory 3300032170 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Coastal Marine Sediment Marine subsurface sediment 8.59234667 -84.07735833 270452943 733259 134 11 239 16 SRX740703 0.0 Metagenome 3300029735 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37222 Beijing Genomics Institute (BGI) 3300029735 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 176964547 224787 149 0 192 0 0.0 Metagenome 3300000230 *Microbiome Draft Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- GS10_10 DOE Joint Genome Institute (JGI) 3300000230 Metagenome Analysis released based on JGI ITS Yes Yes jlm80@psu.edu Jennifer Macalady Yes 25620962 Environmental Aquatic Groundwater Freshwater Cave water Groundwater 43.383333 12.95 581077747 1209977 396 27 617 47 Unrestricted 0.0 Metagenome 3300002816 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G06K3-12 DOE Joint Genome Institute (JGI) 3300002816 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 446404 1525 25 2 47 2 SRX1991310 Unrestricted 0.0 Metagenome 3300013911 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00877 Weill Cornell Medical College 3300013911 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.69 -73.84 7155864 13192 4 0 11 0 SRX822843 0.0 Metagenome 3300018790 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_41 DOE Joint Genome Institute (JGI) 3300018790 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 468310144 998630 530 2 929 3 SRX3942526 Unrestricted 114.15 Metagenome 3300045031 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Plains ecozone, Canada - Lake 04-613 Genome Quebec 3300045031 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 60.813148 -114.589631 848111169 2047929 523 169 893 238 0.0 Metagenome 3300061212 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from National Grasslands LBJ, Texas, USA - CLBJ_038-M-20210504-comp-1 DOE Joint Genome Institute (JGI) 3300061212 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Grasslands Soil Unclassified Terrestrial soil 33.41426 -97.5971 1294620558 2361851 524 19 1029 29 Unrestricted 17.06 Metagenome 3300022358 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1OPP2 JM5 AGRF 3300022358 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 43505075 75148 25 0 41 0 0.0 Metagenome 3300028406 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #285 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028406 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 52129103 84986 25 1 43 2 SRX2526865 Unrestricted 0.0 Metagenome 3300017407 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_03OCT2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017407 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 170387261 321084 34 76 47 113 SRX3927225 Unrestricted 9.94 Metagenome 3300017688 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR46_S_MetaG DOE Joint Genome Institute (JGI) 3300017688 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 61.242 21.4899 48728547 80296 97 0 154 1 SRX3604113 Unrestricted 217.59 Metagenome 3300026661 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-B (SPAdes) DOE Joint Genome Institute (JGI) 3300026661 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.33 7049434 21694 68 3 109 6 SRX1991379 Unrestricted 0.0 Metagenome 3300029229 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021220-43 Beijing Genomics Institute (BGI) 3300029229 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 160920486 196114 110 0 153 0 0.0 Metagenome 3300048886 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from Gulf of California, Mexico - CTD-FK190211-025-250m-0.65 DOE Joint Genome Institute (JGI) 3300048886 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 23.95663 -108.86187 1161373367 1778588 439 95 675 146 Unrestricted 29.75 Metagenome 3300022519 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 1-5 DOE Joint Genome Institute (JGI) 3300022519 Metagenome Analysis spades v. 3.11.1-check Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0471 43479815 132045 93 5 188 4 SRX4415328, SRX8128000 Unrestricted 0.0 Metagenome 3300070629 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_072-M-20180628-COMP-DNA1 3300070629 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 88108987 246571 90 23 150 32 0.0 Metagenome 3300039850 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_004-M-20170705-COMP-DNA1 Battelle Memorial Institute 3300039850 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 24270221 69340 84 7 156 7 0.0 Metagenome 3300003207 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05K5-12 DOE Joint Genome Institute (JGI) 3300003207 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 891735 2879 47 1 80 7 SRX2576208 Unrestricted 0.0 Metagenome 3300046535 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere DOE Joint Genome Institute (JGI) 3300046535 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1213 -123.2692 966938176 1647313 343 78 590 92 Unrestricted 13.48 Metagenome 3300070963 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Agroecosystem, Kansas, USA - KONA_057-M-20170809-COMP-DNA1 3300070963 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Agricultural land Soil 503130 1593 12 3 21 3 0.0 Metagenome 3300014904 *Microbiome Permanent Draft Danish lakes Microbial communities Depth profiles Lake Almind and Hund Freshwater microbial communities from Lake Hund, Silkeborg, Region Midtjylland, Denmark - HUS_14.08.12_1m re-submission with coverage Odense University Hospital 3300014904 Metagenome Analysis MEGAHIT v1.1.1 released by JGI data releasing policy Yes Yes atreusch@biology.sdu.dk Alexander Treusch No Environmental Aquatic Lake Freshwater Unclassified Freshwater 56.04 9.54 6.4 14942848 33539 18 8 30 7 0.0 Metagenome 3300012033 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 3 #764 DOE Joint Genome Institute (JGI) 3300012033 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 282086351 506435 239 37 379 61 SRX3241973 Unrestricted 0.0 Metagenome 3300043781 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - DMB5_1SRT_B DOE Joint Genome Institute (JGI) 3300043781 Metagenome Analysis metaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.414 29285838 30833 69 2 73 2 SRX12687775 Unrestricted 0.0 Metagenome 3300037243 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPN2-1-M DOE Joint Genome Institute (JGI) 3300037243 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3628 19.0528 1235000987 2263390 352 50 553 64 SRX8166964 Unrestricted 10.4 Metagenome 3300004147 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_CordA_D2 DOE Joint Genome Institute (JGI) 3300004147 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.13147 -122.265465 772096454 2405659 817 11 1745 7 SRX7146199 Unrestricted 0.0 Metagenome 3300014224 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 216_D1_2014-6-18 San Diego State University 3300014224 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 204520 796 8 3 17 2 0.0 Metagenome 2162886011 *Microbiome Permanent Draft Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan State University, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v2 (version 2) DOE Joint Genome Institute (JGI) 2162886011 Metagenome Analysis released based on JGI ITS No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Miscanthus rhizosphere 42.406189 -85.40016 75060759 119584 4 0 8 0 Unrestricted 0.0 Metagenome 3300027395 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 PM (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027395 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 193706294 542343 433 29 769 38 SRX2574397 Unrestricted 0.0 Metagenome 2156126001 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - C5 University of Sao Paulo, Virginia Bioinformatics Institute 2156126001 Metagenome Analysis newbler Released per IMG Data Release Policy (March 19 2015) No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 23637931 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 374660292 942804 591 16 1299 0 0.0 Metagenome 3300007879 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 763961826 replicate 1 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007879 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 12061860 25750 11 2 24 6 SRX024915 0.0 Metagenome 3300034682 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from deep shales in Oklahoma, United States - MC-4-A DOE Joint Genome Institute (JGI) 3300034682 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back fracking water 35.784 -98.26 322029956 557449 245 3 310 6 SRX8135498 Unrestricted 178.06 Metagenome 3300035041 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B3.9_Sample3.Rodeo9.Well667 DOE Joint Genome Institute (JGI) 3300035041 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 135561758 219946 126 0 186 0 SRX8353451 Unrestricted 75.97 Metagenome 3300028654 *Microbiome Permanent Draft Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG DOE Joint Genome Institute (JGI) 3300028654 Metagenome Analysis spades v. 3.11.1 Yes Yes rbneum@uw.edu Rebecca Neumann No Host-associated Plants Rhizosphere Roots Soil rhizosphere 47.6516 -122.3045 537208322 1309610 393 3 708 11 SRX5271537 Unrestricted 9.24 Metagenome 3300038661 *Microbiome Permanent Draft Lake microbial communities from Canada Sediment microbial communities from the Atlantic Highlands, Canada - top sediment 17-054 metaSPAdes Genome Quebec 3300038661 Metagenome Analysis SPAdes v. 3.11.1 metaSPAdes mode released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Sediment 47.694086 -67.642841 1182898171 3372963 701 7 1497 8 0.0 Metagenome 3300045814 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - S2-R1-B DOE Joint Genome Institute (JGI) 3300045814 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS No Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3571 19.051 300137382 674967 160 12 321 25 Unrestricted 7.4 Metagenome 3300036406 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Jul2015-rr0122 DOE Joint Genome Institute (JGI) 3300036406 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1523275016 2981885 745 133 1112 210 SRX8202671 Unrestricted 11.61 Metagenome 3300012999 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta sexdens ASBM1 DOE Joint Genome Institute (JGI) 3300012999 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Fungi Unclassified Mycelium Unclassified fungus garden -21.164 -47.857 702519501 826874 263 171 468 320 Unrestricted 32.96 Metagenome 3300064942 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 746 in Carstairs, Alberta, Canada - S00JY_0186 Microbiome Insights 3300064942 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.29325538 -114.0540409 53328544 79636 41 2 90 2 0.0 Metagenome 3300042812 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S3_50_60 NMDC pilot DOE Joint Genome Institute (JGI) 3300042812 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen Yes 29920461 Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228508 -119.2716818 108575090 273644 167 1 282 2 SRX2523284 0.0 Metagenome 3300070806 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_047-M-20190730-COMP-DNA2 3300070806 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 2728702 8551 44 3 56 2 0.0 Metagenome 3300005370 *Microbiome Permanent Draft PCE-dechlorinating microbial communities from Ithaca, New York, USA PCE-dechlorinating microbial communities from Ithaca, New York, USA - Untrimmed contigs DOE Joint Genome Institute (JGI) 3300005370 Metagenome Analysis Unkonwn No Yes rer26@cornell.edu Ruth Richardson No Engineered Bioremediation Tetrachloroethylene Tetrachloroethylene and derivatives Bioreactor PCE-dechlorinating 42.4405556 -76.4969444 1341646 1488 1 0 1 0 0.0 Metagenome 3300059751 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1551A-3 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059751 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.187 -123.8837 61019817 145524 175 61 290 97 SRX2753727 Unrestricted 0.0 Metagenome 3300025954 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D1 (SPAdes) DOE Joint Genome Institute (JGI) 3300025954 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.000637 -121.624207 69843548 167435 106 1 184 0 SRX7143401 Unrestricted 0.0 Metagenome 3300027576 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027576 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 275040067 762941 325 31 586 62 SRX3311925 Unrestricted 0.0 Metagenome 3300002425 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP07-I1 3300002425 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 2100351000 *Microbiome Draft Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA Microbial communities from bioreactor (seeded with anoxic lake sediment) at LBNL, California, USA - Biofuel metagenome 1 version 2 (version 3) DOE Joint Genome Institute (JGI) 2100351000 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes hrbeller@lbl.gov Harry Beller Yes 29556105 Engineered Bioreactor Unclassified Anaerobic Unclassified Bioreactor 37.8754404 -122.2477251 1275044948 2706009 1895 116 3784 0 Unrestricted 0.0 Metagenome 3300001561 *Microbiome Finished Human fecal microbial communities from the University of Tokyo, Japan, of healthy Japanese infants and adults Human fecal microbial communities from the University of Tokyo - healthy human sample F1-U, Infant, Female 3300001561 Metagenome Analysis PCAP released per Nikos No Yes hattori@k.u-tokyo.ac.jp Hattori M Yes 17916580 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 35.71 139.76 0 0 0 0 0 0 0.0 Metagenome 3300038809 *Microbiome Permanent Draft Industrial fuel microbial communities from aircraft samples near Hamburg, Germany Industrial fuel microbial communities from aircraft samples near Hamburg, Germany - 190925_025_001 re-assembly HPI Heinrich-Pette-Institut 3300038809 Metagenome Analysis metaSpades v. 3.1 released by Ines Krohn-Molt No Yes wolfgang.streit@uni-hamburg.de; ines.krohn@uni-hamburg.de Wolfgang Streit; Ines KROHN No Engineered Industrial production Unclassified Engineered product Unclassified Industrial fuel 53.338 9.5152 75743064 86436 15 7 21 8 0.0 Metagenome 2189573027 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Estuarine microbial communities from Columbia River, sample from CR-7km from mouth, GS312-FOS-0p8-CR7-chlmax University of South Carolina 2189573027 Metagenome Analysis released per JGI data release policy No Yes mariyasmit@hotmail.com Mariya Smit, Mariya W. Smit No Environmental Aquatic Intertidal zone Marine Estuary Marine estuarine 46.167 -124.158 23631470 47655 33 0 64 0 0.0 Metagenome 3300026626 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_10_20 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026626 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 26141227 36342 22 0 30 0 SRX2924399 Unrestricted 0.0 Metagenome 3300007548 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1548B-3 DOE Joint Genome Institute (JGI) 3300007548 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2319 -123.8812 342675583 671083 352 34 527 62 SRX2753630 Unrestricted 0.0 Metagenome 3300020534 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 12JUL2011 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020534 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 115035682 232285 94 8 119 14 SRX1989657 Unrestricted 0.0 Metagenome 3300028950 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 38_B Beijing Genomics Institute (BGI) 3300028950 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 12140933 15652 7 0 12 0 ERX491129 0.0 Metagenome 3300006630 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_11_5 DOE Joint Genome Institute (JGI) 3300006630 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 20821072 52322 156 8 265 19 SRX2924867 Unrestricted 0.0 Metagenome 3300044822 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Soil microbial communities from peatland in Alberta, Canada - SB-NH 0-10 cm DOE Joint Genome Institute (JGI) 3300044822 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4768 -114.8775 1176816983 1805875 303 78 454 112 Unrestricted 12.73 Metagenome 3300012141 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Florida, USA - TSFL042 MetaG DOE Joint Genome Institute (JGI) 3300012141 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 28.709 -81.4873 176725285 298552 43 60 53 104 SRX3539480 Unrestricted 0.0 Metagenome 3300025650 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025650 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.299 -156.61 426471453 806935 199 3 311 2 SRX2899914 Unrestricted 0.0 Metagenome 3300007135 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158458797 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007135 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 95715543 146386 87 0 118 0 0.0 Metagenome 3300048810 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 P1 30-34 DOE Joint Genome Institute (JGI) 3300048810 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.0471 622184537 845674 138 3 210 4 Restricted 17.31 Metagenome 2140918003 *Microbiome Permanent Draft Marine sediment archaeal communities from Santa Barbara Basin, CA, that are anaerobic and methane-oxidizing Marine sediment archaeal communities from Santa Barbara Basin, CA, that are methane-oxidizing, sample 12-15 cm DOE Joint Genome Institute (JGI) 2140918003 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Sediment Marine sediment 34.21 -119.5 30097641 70150 30 0 61 0 Unrestricted 0.0 Metagenome 3300005692 *Microbiome Finished Human fecal microbial communities from the State University of New York at Buffalo, New York, USA, of three healthy adults Human fecal microbial communities J. Craig Venter Institute, Maryland, USA - Subject 7 J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300005692 Metagenome Analysis Celera No Yes srgill@buffalo.edu Steven R. Gill Yes 16741115 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 39.134321 -77.181702 15833534 22319 56 0 80 0 0.0 Metagenome 3300016639 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Site 228 with 0.1UM filter J. Craig Venter Institute 3300016639 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Unclassified Marine Unclassified marine -68.4 78.18278 7.29 9626964 31553 26 0 33 0 0.0 Metagenome 3300042128 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0117W_E14_070716_123 DOE Joint Genome Institute (JGI) 3300042128 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.9457 -103.6985 108442447 300798 210 21 364 24 Unrestricted 7.06 Metagenome 3300046502 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvCe-C(1) 10-14 DOE Joint Genome Institute (JGI) 3300046502 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0434 265047969 433068 152 2 234 5 Restricted 12.21 Metagenome 3300002694 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Biofilm from sections of failed pipe - PAS_821 McGill University 3300002694 Metagenome Analysis released per JGI data release policy No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey No Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 55.07 -110.53 15070624 20213 11 0 16 0 0.0 Metagenome 3300020450 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077) CEA Genoscope 3300020450 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -16.9554 -100.6925 1276955272 3043205 457 80 894 142 0.0 Metagenome 3300041522 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Bulk soil microbial community from Lincoln, Canterbury, New Zealand - BS18_12 MetaG AgResearch, New Zealand, Mosgeil 3300041522 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Environmental Terrestrial Unclassified Soil Agricultural land Dairy farm pasture soil -43.648506 172.343549 969373716 2367569 230 17 874 41 0.0 Metagenome 3300035133 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0606U02 DOE Joint Genome Institute (JGI) 3300035133 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8973 -97.0409 601094941 1466990 601 11 1062 13 SRX8257320 Unrestricted 6.35 Metagenome 3300014600 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00601 Weill Cornell Medical College 3300014600 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.77 -73.95 29931726 37203 12 0 20 0 SRX822568 0.0 Metagenome 3300000492 *Microbiome Permanent Draft Turbot gut microbial communities from Qingdao, China Turbot gut microbe from Qingdao, China Chinese Academy of Sciences 3300000492 Metagenome Analysis released per JGI data release policy No Yes sxxxmx@126.com Xing Mengxin, Mengxin Xing No Host-associated Fish Unclassified Digestive system Unclassified Turbot gut 35.873472 120.044632 0 0 0 0 0 0 0.0 Metagenome 3300026172 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_D1_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026172 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4961 -122.1331 312785759 668799 401 11 690 14 SRX2523448 Unrestricted 0.0 Metagenome 3300012214 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100704 University of Pennsylvania 3300012214 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 6136307 8599 5 3 14 6 SRX756146 0.0 Metagenome 3300001013 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0326 DOE Joint Genome Institute (JGI) 3300001013 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -9.12 -30.19 15390833 39504 53 10 86 18 SRX1983271 Unrestricted 0.0 Metagenome 3300029702 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37293 Beijing Genomics Institute (BGI) 3300029702 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 198498295 236088 151 0 213 0 0.0 Metagenome 3300020261 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000401 (ERX556096-ERR598970) CEA Genoscope 3300020261 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -29.5023 37.9965 194429435 520341 240 8 400 14 ERX556127, ERX556096, ERX556012 0.0 Metagenome 3300059837 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.1C.9 SIP fraction DOE Joint Genome Institute (JGI) 3300059837 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 575005516 1144280 252 3 414 8 Unrestricted 0.0 Metagenome 3300052901 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Colorado, USA - CP_L1_S1 DOE Joint Genome Institute (JGI) 3300052901 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 39.93806 -105.96602 286901050 509788 379 51 727 65 Unrestricted 23.77 Metagenome 3300012889 *Microbiome Permanent Draft Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA Microbial communities from bioreactor (seeded with sewage sludge) at Lawrence Berkeley National Lab, California, USA - Biofuel Metagenome 9 (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300012889 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes hrbeller@lbl.gov Harry Beller Yes 29556105 Engineered Bioreactor Unclassified Anaerobic Unclassified Bioreactor 37.82 -122.29 441405061 754525 1719 0 2974 0 SRX2769838, SRX2769839, SRX2769840, SRX2769841 Unrestricted 0.0 Metagenome 3300044824 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Soil microbial communities from peatland in Alberta, Canada - SB-NW 40-50 cm DOE Joint Genome Institute (JGI) 3300044824 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4768 -114.8775 511843520 698465 124 0 173 0 Unrestricted 23.47 Metagenome 3300044459 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 419-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044459 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.977 -107.0664 645478328 1613688 486 19 923 39 Unrestricted 7.72 Metagenome 3300053729 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 endosphere DOE Joint Genome Institute (JGI) 3300053729 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121406 -123.270107 450174471 559779 69 80 97 142 Unrestricted 16.4 Metagenome 3300020532 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 09NOV2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020532 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.098333 -89.405278 107063978 233002 138 4 210 4 SRX1989931 Unrestricted 0.0 Metagenome 3300034980 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #6 DOE Joint Genome Institute (JGI) 3300034980 Metagenome Analysis metaspades v. 3.13.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.6953 -122.3565 423801660 666622 239 9 338 9 SRX8669314 Unrestricted 96.87 Metagenome 3300050497 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Bulk soil microbial communities from a Populus tree surrounding site in Tennessee, USA - Soil MetaG P. deltoides SBSDD1 re-annotation DOE Joint Genome Institute (JGI) 3300050497 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Environmental Terrestrial Tree plantation Soil Unclassified Bulk soil 35.8443 -83.9607 1094076201 2694709 810 14 1498 22 SRX2776983, SRX2776982 0.0 Metagenome 3300022650 *Microbiome Permanent Draft Thermokarst lakes Summer vs Winter Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Winter W3 Laval University 3300022650 Metagenome Analysis IDBA-UD 1.1 released by Adrien Vigneron No Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 55.1491 -77.4866 345978568 815884 403 2 679 10 0.0 Metagenome 3300046504 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvCe-C(1) 30-34 DOE Joint Genome Institute (JGI) 3300046504 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0434 530462528 837896 284 0 452 0 Restricted 12.99 Metagenome 3300036785 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in New South Wales, Australia - Pi_3 DOE Joint Genome Institute (JGI) 3300036785 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil -33.6 150.0 1188608120 1946612 235 26 413 35 SRX8384158 Unrestricted 25.8 Metagenome 3300043479 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 030-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043479 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9567 -106.9859 222773733 632599 369 10 693 28 Unrestricted 7.98 Metagenome 3300038353 *Microbiome Permanent Draft Marine microbial communities from North Pacific Gyre, Pacific Ocean Marine microbial communities from North Pacific Gyre, Pacific Ocean - CSHLIID00-20a-S61C001-0015 Oceanography, University of Hawaii at Manoa 3300038353 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 28758990 Environmental Aquatic Oceanic Marine Unclassified Marine 24.4 -156.36 34574037 79944 77 10 107 13 SRX2445715 0.0 Metagenome 3300028021 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 DOE Joint Genome Institute (JGI) 3300028021 Metagenome Analysis spades v. 3.11.1 Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 59.9989 10.7903 44419675 123897 94 20 175 44 SRX5272047 Unrestricted 7.93 Metagenome 3300004008 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_CordB_D2 DOE Joint Genome Institute (JGI) 3300004008 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.015896 -122.501663 828769977 2602477 834 19 1560 32 SRX7142161 Unrestricted 0.0 Metagenome 3300057023 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M1L_9_10 DOE Joint Genome Institute (JGI) 3300057023 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0036317 -81.5659748 1025257195 1769083 530 16 948 22 Unrestricted 13.76 Metagenome 3300005694 *Microbiome Finished Mouse gut microbial communities from Washington University in St Louis, Missouri, USA, of lean and obese mice Mouse gut microbial communities from Washington University in St Louis, Missouri, USA - Lean Mouse 3 Gut Washington University in St. Louis 3300005694 Metagenome Analysis Newbler No Yes jgordon@wustl.edu Human Gut Community Users Yes 17183312 Host-associated Mammals Large intestine Digestive system Cecum Mouse gut 38.63055 -90.194664 2143888 4129 0 0 1 0 0.0 Metagenome 3300043541 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNPCB058 DOE Joint Genome Institute (JGI) 3300043541 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes viola.krukenberg@montana.edu Viola Krukenberg No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.5704 -110.8052 513943372 813094 351 4 500 2 Unrestricted 68.11 Metagenome 3300000273 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM039 Beijing Genomics Institute (BGI), Macrogen 3300000273 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 119242887 212002 304 1 472 4 0.0 Metagenome 3300026174 *Microbiome Permanent Draft Utah desert microbiome from environmental samples near Hanksville, Utah, USA Rock biofilm microbial communities from Utah desert near Hanksville, Utah, USA - DV McGill University 3300026174 Metagenome Analysis canu v. 1.7 released by Catherine Maggiori No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Terrestrial Unclassified Soil Desert Rock biofilm 38.41538991 -110.78677342 14361317 18902 9 0 13 1 0.0 Metagenome 3300032133 *Microbiome Permanent Draft Rhizosphere microbial communities from salt marsh grasses in Alabama, United States Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA DOE Joint Genome Institute (JGI) 3300032133 Metagenome Analysis spades v. 3.12.0 Yes Yes omason@fsu.edu Olivia Mason No Host-associated Plants Rhizosphere Roots Unclassified rhizosphere 30.2619 -88.2383 683653355 1561687 586 13 1039 19 SRX5821834 Unrestricted 9.25 Metagenome 3300007016 *Microbiome Permanent Draft Biogas reactor microbial communities from Swedish University of Agricultural Sciences, Alnarp, Sweden, and As, Norway that are enriched on cellulose Biogas reactor microbial communities from As, Norway - D1BOC_Hiseq_PacBio7C99_UnincorpCap3 undefined Coprothermobacter group of bacteria Genomics Core Facility (Oslo University Hospital and University of Oslo) 3300007016 Metagenome Analysis Cap3 IDBA Mira released per JGI data release policy No Yes phillip.b.pope@gmail.com Phillip Pope, Phil B. Pope No Engineered Bioreactor Biogas Anaerobic Unclassified Biogas reactor 59.6 10.8 30484165 59251 16 0 82 0 0.0 Metagenome 3300027603 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027603 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 343018215 783609 208 57 391 84 SRX3312032 Unrestricted 0.0 Metagenome 3300005880 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_201 DOE Joint Genome Institute (JGI) 3300005880 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 185732975 683994 404 7 766 9 SRX2564939, SRX2581048 Unrestricted 0.0 Metagenome 3300000494 *Microbiome Permanent Draft Anaerobic digester microbial communities from Soeholt, Denmark Anaerobic digester microbial communities from Northern Denmark, sample from West Aalborg sludge Aalborg University 3300000494 Metagenome Analysis released per JGI data release policy No Yes starnas88@gmail.com Piotr Starnawski No Engineered Wastewater Dissolved organics (anaerobic) Nutrient removal Activated sludge Anaerobic digester 57.045078 10.047414 39999792 56166 31 0 70 0 0.0 Metagenome 3300007367 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763820215 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007367 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 52011166 90415 38 0 56 0 0.0 Metagenome 3300039003 *Microbiome Finished Crude oil contaminated agricultural soil mecrobial communities from various regions in India Soil microbial community of crude oil contaminated soil of Noonmati region, Assam, India - N2 Eurofins Genomics India Pvt Ltd. 3300039003 Metagenome Analysis CLC Genomic workbench v. 9.5.2 released by JGI data releasing policy No Yes nanditadas753@gmail.com nandita das No Environmental Terrestrial Unclassified Soil Oil-contaminated Soil 26.1986 91.8001 211870674 367776 65 4 110 6 0.0 Metagenome 3300015214 *Microbiome Permanent Draft Leachate and groundwater microbial communities from a municipal landfill and adjacent aquifer in Southern Ontario, Canada Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138R metaG DOE Joint Genome Institute (JGI) 3300015214 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes laura.hug@uwaterloo.ca Laura Hug No Engineered Solid waste Unclassified Landfill Unclassified landfill leachate 43.442 -80.577 2151718941 3941155 2555 7 3904 10 SRX3574178 Unrestricted 12.15 Metagenome 3300003838 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - At.P.rz DOE Joint Genome Institute (JGI) 3300003838 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes avisel@lbl.gov, laila.partida@cinvestav.mx Axel Visel, Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 20.6863 -101.8747 253365543 412350 307 11 494 32 SRX2122697 Unrestricted 0.0 Metagenome 3300039795 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA Prairie soil microbial communities from Boone County, Iowa, USA - P13-Micro-July2012 Iowa State University 3300039795 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land Prairie soil 42.01375 -93.783837 33651868 113921 95 8 212 11 0.0 Metagenome 3300029704 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37461 Beijing Genomics Institute (BGI) 3300029704 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 176402899 241823 169 2 242 0 0.0 Metagenome 3300031246 *Microbiome Permanent Draft Soil microbial communities Riparian soil bacterial communities from Cottonwood Creek Park, Encinitas, CA, USA - R Illumina 3300031246 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Riparian soil Soil 33.051658 -117.289363 519272546 1942948 247 21 558 54 0.0 Metagenome 3300001232 *Microbiome Permanent Draft Comparative metagneomics of mesophilic and thermophilic cellulose-adapted consortia Cellulose adapted compost microbial communities from Newby Island Compost Facility, Milpitas, CA, USA - Passage2 60A DOE Joint Genome Institute (JGI) 3300001232 Metagenome Analysis Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Solid waste Composting Bio- and green waste (BGW) Unclassified Feedstock adapted compost 37.840898 -122.289614 33898870 50489 48 0 68 0 SRX3782578 Unrestricted 0.0 Metagenome 3300017564 *Microbiome Permanent Draft Bras del Port Febrero 2015 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CR41 Febrary 2015 University of Valencia 3300017564 Metagenome Analysis idba.1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Non-marine hypersaline water 38.1922 -0.5918 23799065 83349 3 0 1 0 0.0 Metagenome 3300000625 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 09AUG2007 hypolimnion DOE Joint Genome Institute (JGI) 3300000625 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300014902 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 608_B Beijing Genomics Institute (BGI) 3300014902 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 27586117 33103 12 0 16 0 ERX491265 0.0 Metagenome 3300037423 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from bulk soil in EcoFAB chamber, Walnut Creek, California, United States - Soil-Control_C SG_15 DOE Joint Genome Institute (JGI) 3300037423 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9315 -122.0212 2330878621 3834898 749 66 1160 88 Unrestricted 19.07 Metagenome 3300070720 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Alabama, USA - LENO_004-M-20180709-COMP-DNA1 3300070720 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 17100977 52032 54 2 91 4 0.0 Metagenome 2228664010 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Hydrocarbon resource environments microbial communities from Canada and USA - Toluene degrading community from Alberta, Canada McGill University 2228664010 Metagenome Analysis released per user request No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 54.0 -114.0 87534765 226696 109 0 193 0 0.0 Metagenome 3300008219 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05 DOE Joint Genome Institute (JGI) 3300008219 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 40.24 2.3 467982578 942640 187 0 300 0 SRX2753823 Unrestricted 0.0 Metagenome 3300027975 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027975 Metagenome Analysis spades v. 3.11.1 Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0956 -99.1001 799462326 1655526 558 42 947 69 SRX2753770 Unrestricted 0.0 Metagenome 3300007788 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 DOE Joint Genome Institute (JGI) 3300007788 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield No Host-associated Plants Rhizosphere Roots Soil Vadose zone soil 39.7291 -123.6419 789065644 1639228 434 33 829 76 SRX2933107 Unrestricted 0.0 Metagenome 3300042267 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA MBR feed microbial communities from membrane bioreactor in Denver, Colorado, USA - FD_D56_02 DOE Joint Genome Institute (JGI) 3300042267 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Wastewater Mine water Industrial wastewater Produced water MBR feed 39.7823 -104.9101 338903638 508878 338 5 424 10 Unrestricted 27.46 Metagenome 3300030097 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_137 - TARA_R100000750 CEA Genoscope 3300030097 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine 14.2025 -116.6433 157245718 313476 66 0 101 0 0.0 Metagenome 3300014222 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 258_L4_2014-7-9 San Diego State University 3300014222 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 212363 465 0 2 3 5 0.0 Metagenome 3300032041 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22 DOE Joint Genome Institute (JGI) 3300032041 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1093653445 2646486 375 5 684 8 SRX5820220 Unrestricted 11.19 Metagenome 3300064944 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 746 in Carstairs, Alberta, Canada - S00JY_0219 Microbiome Insights 3300064944 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.29325538 -114.0540409 61591899 94417 49 0 76 0 0.0 Metagenome 3300042814 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120 NMDC pilot DOE Joint Genome Institute (JGI) 3300042814 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92039953 -106.94828697 1206011502 3018363 537 13 1033 31 SRX5354622 0.0 Metagenome 3300003431 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN DOE Joint Genome Institute (JGI) 3300003431 Metagenome Analysis Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 177907947 442314 284 21 513 60 SRX2565049 Unrestricted 0.0 Metagenome 3300034684 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from deep shales in Oklahoma, United States - K-7-4 DOE Joint Genome Institute (JGI) 3300034684 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back fracking water 35.812 -98.262 307638595 463452 355 4 400 5 SRX8136093 Unrestricted 179.11 Metagenome 3300021573 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - E2014-0044-100LTR Downsampled Assembly University of Michigan 3300021573 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified freshwater lake 41.827283 -83.195217 14102112 26518 14 5 18 7 0.0 Metagenome 3300028652 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_3 DOE Joint Genome Institute (JGI) 3300028652 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 506806031 1410285 690 26 1200 47 SRX5281728 Unrestricted 0.0 Metagenome 3300042289 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2015-rr0402 DOE Joint Genome Institute (JGI) 3300042289 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1458776231 2141661 500 139 692 207 Unrestricted 19.09 Metagenome 3300045812 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_3_A DOE Joint Genome Institute (JGI) 3300045812 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 173863502 218828 93 1 106 2 Unrestricted 106.11 Metagenome 3300036317 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B6.3_Sample6.Rodeo3.Well662 DOE Joint Genome Institute (JGI) 3300036317 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 57638688 93989 61 0 96 0 SRX8356084 Unrestricted 201.85 Metagenome 3300036946 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - SCT 52 I DOE Joint Genome Institute (JGI) 3300036946 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 894521012 1809223 756 90 1137 147 SRX8356966 Unrestricted 7.61 Metagenome 3300002370 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 03MAY2011 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002370 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 21364712 55058 33 27 68 56 SRX1989295 Unrestricted 0.0 Metagenome 3300005425 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV199 DOE Joint Genome Institute (JGI) 3300005425 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 569537654 1459670 687 7 1158 8 SRX2782414 Unrestricted 0.0 Metagenome 3300005990 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T3_30-Apr-14 DOE Joint Genome Institute (JGI) 3300005990 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 318959394 951531 451 263 808 455 SRX2838893 Unrestricted 0.0 Metagenome 3300025952 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLB_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025952 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.209923 -122.033409 223549081 422830 238 1 342 2 SRX7142964 Unrestricted 0.0 Metagenome 3300018072 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2 DOE Joint Genome Institute (JGI) 3300018072 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 .3 660887631 1414978 675 20 1252 34 SRX3939695 Unrestricted 5.09 Metagenome 3300025193 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0555 (SPAdes) DOE Joint Genome Institute (JGI) 3300025193 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -26.91 -21.43 56088055 103117 68 18 103 14 SRX1982948 Unrestricted 0.0 Metagenome 3300020446 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001287 (ERX556031-ERR598989) CEA Genoscope 3300020446 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 14.2017 -116.6336 1108966832 2781406 397 45 701 84 0.0 Metagenome 3300046771 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mississippi River, Iowa, USA - NASQAN2011_277 DOE Joint Genome Institute (JGI) 3300046771 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 41.7805 -90.252 7264106 24346 65 7 78 12 Unrestricted 0.0 Metagenome 3300031777 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24 DOE Joint Genome Institute (JGI) 3300031777 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1098619472 2654623 420 4 689 12 SRX5820066 Unrestricted 11.92 Metagenome 3300035170 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 DOE Joint Genome Institute (JGI) 3300035170 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1125 -122.987 1856918986 4481011 1106 89 1940 153 SRX8289429 Unrestricted 7.22 Metagenome 3300005816 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS881 Marine Biological Laboratory 3300005816 Metagenome Analysis Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow diffuse flow hydrothermal vent 18.375 -81.797 42477432 55451 6 0 15 0 0.0 Metagenome 3300014308 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1 DOE Joint Genome Institute (JGI) 3300014308 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.000706 -121.624306 295352678 748751 366 3 672 8 SRX7188929 Unrestricted 0.0 Metagenome 3300013783 *Microbiome Permanent Draft Marine Prochlorococcus and Synechococcus communites from Sargasso sea and California currents Marine microbial communites from Sargasso Sea - Prochlorococcus B258 80m rep 1 UCI 3300013783 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 5113175 14011 1 0 12 0 0.0 Metagenome 3300042031 *Microbiome Permanent Draft Mollusc gills microbial communities from various hydrothermal vent in Atlantic Ocean Mollusc gills microbial communities from Clueless hydrothermal vent, Atlantic Ocean - BspSym_Cl_1_11-2 Max Planck Institute for Marine Microbiology 3300042031 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills -4.803266 -12.3718 280092846 322605 3 2 5 8 ERX3367185 0.0 Metagenome 3300037228 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPON1-1-S DOE Joint Genome Institute (JGI) 3300037228 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3569 19.0501 944980517 1753003 306 5 556 12 SRX8163538 Unrestricted 8.53 Metagenome 3300007080 *Microbiome Permanent Draft Cephalotes ants gut microbiomes Ant gut microbial communities from Cephalotes clypeatus, Brazil Harvard University 3300007080 Metagenome Analysis IDBA-UD released by Yi Hu Yes Yes pl356@drexel.edu, yihu.bnu@gmail.com Piotr Lukasik, Yi Hu No Host-associated Arthropoda: Insects Gut Digestive system Unclassified ant gut -19.11 -48.24 103844936 203544 28 1 38 2 0.0 Metagenome 3300025358 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025358 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 92518102 188305 52 17 78 28 SRX2565403 Unrestricted 0.0 Metagenome 3300000871 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and M2 (3) DOE Joint Genome Institute (JGI) 3300000871 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 49518428 77265 34 0 52 0 SRX3311620 Unrestricted 0.0 Metagenome 3300061141 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IF3SW no PMA treatment Jet Propulsion Laboratory, California Institute of Technology 3300061141 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 33960835 62823 24 6 27 10 SRX2249367, SRX2249366, SRX3808538, SRX3808528 0.0 Metagenome 3300020505 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 02APR2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020505 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 92671562 187180 79 55 106 87 SRX1989752 Unrestricted 0.0 Metagenome 3300017947 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG DOE Joint Genome Institute (JGI) 3300017947 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 4.2396 -73.2024 1209969270 2833593 1400 68 2599 110 SRX3936927 Unrestricted 4.75 Metagenome 3300036652 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil viral communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 21_4.5_V_3 DOE Joint Genome Institute (JGI) 3300036652 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1866 -2.2146 280223210 744054 33 6 61 11 SRX8234411 Unrestricted 48.33 Metagenome 3300039127 *Microbiome Permanent Draft Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA - kan9 University of Minnesota 3300039127 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic River Freshwater Unclassified Freshwater 44.917867 -93.128967 4455377 4901 5 0 3 0 0.0 Metagenome 3300006673 *Microbiome Permanent Draft Marine benthic sponge associated microbial communities from Guam, USA SP1 Lamellodysidea herbacea marine benthic sponge microbial communities from Piti Bomb Holes, Guam, USA - SP1 University of California, San Diego, Scripps Institute of Oceanography 3300006673 Metagenome Analysis IDBA-ud version 1.1.1 released per JGI data release policy No Yes spodell@ucsd.edu Sheila Podell No Host-associated Porifera Unclassified Unclassified Unclassified marine benthic 13.446391 144.682388 4988197 5460 1 0 1 0 0.0 Metagenome 3300025519 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-2-D (SPAdes) DOE Joint Genome Institute (JGI) 3300025519 Metagenome Analysis spades v. 3.11.1 Yes Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 137556296 262649 216 22 245 34 SRX2568350 Unrestricted 0.0 Metagenome 3300034347 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Eunicella gazella from Algarve, Portugal - EG18H Molecular Research LP (MR DNA) 3300034347 Metagenome Analysis Metawrap workflow v. 1.0.5 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 6248284 5694 2 5 2 3 0.0 Metagenome 3300009805 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N3_0_10 DOE Joint Genome Institute (JGI) 3300009805 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37379502 -119.2722385 72471651 170258 178 25 398 23 SRX2523215 Unrestricted 0.0 Metagenome 3300029449 *Microbiome Permanent Draft Sediment microbial communities from Yellow Sea, Weihai, China Sediment microbial communities from Yellow Sea, Weihai, China - HGD.1 Shandong University 3300029449 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Coastal Marine Unclassified Sediment 37.31 122.0 291499191 522727 339 3 529 2 0.0 Metagenome 3300006338 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_0770m University of Hawaii 3300006338 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Aphotic zone Marine 22.75 -158.0 721816078 1519284 953 42 1529 81 0.0 Metagenome 2022920000 *Microbiome Permanent Draft Saline water microbial communities from a Tibetan plateau lake Saline water microbial communities from Qinghai Lake, Tibetan Plateau - High mountain lake (unassembled) University of Illinois, Urbana-Champaign 2022920000 Metagenome Analysis not assembled released per JGI data release policy No Yes wtliu@illinois.edu Wen-Tso Liu No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline water 36.381 100.218 571737779 1606123 0 0 0 0 0.0 Metagenome 3300049313 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA26 DOE Joint Genome Institute (JGI) 3300049313 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 168931507 475935 305 1 524 1 Unrestricted 8.18 Metagenome 3300007104 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765034022 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007104 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 90015388 156211 82 0 115 1 0.0 Metagenome 3300025646 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes) (version 4) DOE Joint Genome Institute (JGI) 3300025646 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 38.9819 -76.3716 356305174 780081 0 0 0 0 SRX2935246, SRX3362802, SRX3362803 Unrestricted 0.0 Metagenome 3300029571 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P034V6 Beijing Genomics Institute (BGI) 3300029571 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 203561832 242020 136 0 212 0 0.0 Metagenome 3300028066 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Atlam_RepB_8h DOE Joint Genome Institute (JGI) 3300028066 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 115274527 243366 152 5 188 9 SRX5245418 Unrestricted 14.07 Metagenome 3300005678 *Microbiome Permanent Draft Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia Enhanced biological phosphorus removal bioreactor viral communities from the University of Queensland, Australia - SBR4-V91307 Phage Sequencing University of Queensland 3300005678 Metagenome Analysis CLC 6.0 Released per Connor Skennerton (Sep 15, 2015) No Yes c.skennerton@gmail.com Connor Skennerton No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor lab-scale EBPR bioreactor -27.49999 153.012098 30190100 65598 5 1 22 3 0.0 Metagenome 3300014709 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS60_24 University of Hohenheim 3300014709 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 64998144 104654 47 0 90 0 0.0 Metagenome 3300024271 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Soil microbial communities from Bohemian Forest, Czech Republic - CSU5 DOE Joint Genome Institute (JGI) 3300024271 Metagenome Analysis spades v. 3.11.1 Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Environmental Terrestrial Temperate forest Soil Unclassified soil 49.0448 13.618 247881539 597587 180 22 292 40 SRX4456303 Unrestricted 8.19 Metagenome 3300032206 *Microbiome Permanent Draft STAs constructed wetland biome Wetland sediment microbial communities from Everglades, Florida, USA - STA19-Sample02_1 University of Florida 3300032206 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy No Yes ng.hanh24@gmail.com Hanh Nguyen No Environmental Aquatic Wetlands Freshwater Sediment sediment 26.38 -80.51 6.6-8.4 8430942 10796 7 0 19 0 0.0 Metagenome 3300005333 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG DOE Joint Genome Institute (JGI) 3300005333 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 2297506296 6635809 1941 65 3395 141 SRX2740384 Unrestricted 0.0 Metagenome 7000000260 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765074482 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000260 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 102029856 204627 0 0 0 0 0.0 Metagenome 3300007523 *Microbiome Permanent Draft Freshwater microbial communities from lake liftoff mats and glacier meltwater in Antarctica Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-03 DOE Joint Genome Institute (JGI) 3300007523 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes slonczewski@kenyon.edu Joan Slonczewski No Environmental Aquatic Ice Freshwater Glacier meltwater Freshwater -77.605 163.163 1644336496 2814271 435 182 645 294 SRX2522452 Unrestricted 0.0 Metagenome 3300069289 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Lower Teakettle, Sierra National Forest, California, USA - TEAK_005-M-20210728-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069289 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 37.058229 -118.988578 3430924048 8202903 1839 271 3515 424 0.0 Metagenome 3300026353 *Microbiome Permanent Draft Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PR4 DOE Joint Genome Institute (JGI) 3300026353 Metagenome Analysis spades v. 3.11.1 Yes Yes ccraft@indiana.edu Chris Craft No Environmental Aquatic Wetlands Freshwater Sediment sediment 31.3377 -81.4644 122453872 366839 323 4 681 5 SRX4796697 Unrestricted 5.63 Metagenome 3300023251 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1073 DOE Joint Genome Institute (JGI) 3300023251 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 149036067 309716 147 0 245 0 SRX4397247 Unrestricted 11.32 Metagenome 3300048595 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Soil microbial communities from Washington Gulch, Colorado, USA - LS_G_07192018 DOE Joint Genome Institute (JGI) 3300048595 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.95 -107.03 1245399844 2233354 516 74 918 86 Unrestricted 17.87 Metagenome 3300029188 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 133_12M Beijing Genomics Institute (BGI) 3300029188 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 107666727 121463 93 0 121 0 ERX490948 0.0 Metagenome 3300008978 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Final time point T65 (1) (live) benzoate enrichments of Methanogenic microbial communities using Athabasca oil sands as inoculum DE NOVO (2) Shell Corporation 3300008978 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 77186187 185883 123 3 178 13 0.0 Metagenome 3300028785 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_2 DOE Joint Genome Institute (JGI) 3300028785 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 878835119 1734710 323 63 483 90 SRX5799206 Unrestricted 0.0 Metagenome 3300042143 *Microbiome Permanent Draft Sediment microbial communities from sulfidic stream in Frasassi Caves, Marche, Italy Biofilm microbial communities from sulfidic stream in Frasassi Caves, Marche, Italy - PC19_111 DOE Joint Genome Institute (JGI) 3300042143 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes heidiaronson@berkeley.edu Heidi Aronson No Environmental Terrestrial Cave Deep subsurface Wall biofilm Biofilm 43.4012 12.9656 446887041 935923 393 14 672 29 Unrestricted 27.04 Metagenome 3300006225 *Microbiome Permanent Draft Biogas reactor microbial communities from Swedish University of Agricultural Sciences, Alnarp, Sweden, and As, Norway that are enriched on cellulose Biogas reactor microbial communities from SLU, Alnarp, Sweden - PacBio 99 accuracy Norwegian Sequencing Centre (NSC) 3300006225 Metagenome Analysis MIRA 4.0 with unincorporated reads released per submitter No Yes phillip.b.pope@gmail.com Phillip Pope, Phil B. Pope Yes 27822555 Engineered Bioreactor Marine sediment inoculum Continuous culture Unclassified mixed substrate biogas reactor 59.8152338 17.6620518 60225119 126526 84 0 126 0 0.0 Metagenome 3300041027 *Microbiome Permanent Draft Hydraulic fracturing wastewater impacted soil microbiome project Amended soil microbial communities from Fox Creek, Alberta, Canada - FC500 University of British Columbia 3300041027 Metagenome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy Yes Yes alessi@ualberta.ca Daniel S. Alessi No Environmental Terrestrial Unclassified Soil Unclassified Soil 54.401 -116.8043 11820294 15028 22 9 43 14 0.0 Metagenome 3300056828 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - APS4_16C_TP2_16O DOE Joint Genome Institute (JGI) 3300056828 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 2634203447 3486739 706 140 851 205 Unrestricted 18.33 Metagenome 7000000451 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human Mid vagina microbial communities from NIH, USA - visit 2, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000451 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Midpoint, Midpoint vagina Human 39.0042816 -77.1012173 3643514 4180 0 0 0 0 0.0 Metagenome 3300001205 *Microbiome Permanent Draft Soil microbial communities from Mediterranean grasslands, California Grasslands soil microbial communities from Hopland, California, USA - 2 DOE Joint Genome Institute (JGI) 3300001205 Metagenome Analysis Yes Yes elbrodie@lbl.gov, ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 38.99297339 -123.0674491 217197900 689301 847 67 1577 98 SRX1978715, SRX1978704, SRX1978714, SRX1978706, SRX1978705, SRX1978716, SRX1978707, SRX1978709, SRX2041365, SRX2041364, SRX1978711, SRX1978710, SRX1978713 Unrestricted 0.0 Metagenome 3300066299 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Mid-Atlantic, VA, USA - BLAN_031-M-20170714-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066299 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Farm Terrestrial soil 39.06026 -78.07164 16242182 51030 99 3 146 4 0.0 Metagenome 3300006739 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159632143 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006739 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; snayfach@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 138830122 179744 111 0 199 0 0.0 Metagenome 3300011499 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway plastic -P00715 Weill Cornell Medical College 3300011499 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Plastic surface city subway plastic 40.86 -73.91 16282952 28903 20 0 26 0 SRX822682 0.0 Metagenome 3300046007 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater viral communities from Lake Mendota, Wisconsin, United States - ME_2020-10-08_15m_Virus_AB DOE Joint Genome Institute (JGI) 3300046007 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 800837186 1648572 191 23 316 51 Unrestricted 41.24 Metagenome 3300012794 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - DID2878_E24_FP2 MG DOE Joint Genome Institute (JGI) 3300012794 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie Yes 29545786 Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 43100521 61909 34 0 52 0 SRX3564789 Unrestricted 0.0 Metagenome 3300033817 *Microbiome Permanent Draft Metagenomes from 1,2,4-trichlorobenzene dechlorinating enrichment cultures Laboratory-enriched microbial communities from a contaminated site in Ontario, Canada - KB1_TCB MSP Beijing Genomics Institute (BGI) 3300033817 Metagenome Analysis spades v. 3.12.0 released by Camilla Nesbo Yes Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Engineered Bioremediation Unclassified Persistent organic pollutants (POP) Unclassified anaerobic enrichment culture 43.65699737 -79.3957 190659356 324799 86 1 183 3 0.0 Metagenome 3300014935 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 598_12M Beijing Genomics Institute (BGI) 3300014935 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 91346478 119798 61 0 78 0 ERX491255 0.0 Metagenome 3300042696 *Microbiome Permanent Draft Soil microbial communities from Wonju, South Korea Soil microbial communities from Wonju, South Korea - Sample C1 New assembly Macrogen Inc 3300042696 Metagenome Analysis MEGAHIT v. 2.4.2 released per request -- IMGSUPP-3417 No Yes mistiers2@gmail.com Jin-Kyung Hong No Environmental Terrestrial Unclassified Soil Unclassified Soil 37.277123 127.903091 529802373 600301 130 7 99 9 0.0 Metagenome 3300002079 *Microbiome Permanent Draft Wastewater treatment plant microbial communities from Luxembourg Wastewater treatment plant microbial communities from Luxembourg - CSTRmetagenomics 3300002079 Metagenome Analysis CLC genomics workbench released by JGI data releasing policy Yes Yes magdalena.calusinska@list.lu Magdalena Calusinska No Engineered Wastewater Unclassified Unclassified Unclassified Wastewater treatment plant 49.507864 5.943557 8.05 89693915 104777 40 0 83 0 0.0 Metagenome 3300000478 *Microbiome Permanent Draft Deep mine microbial communities from Beatrix mine, South Africa, that are thermophilic Deep mine microbial communities from Beatrix mine, South Africa, that are thermophilic, sample 2 Inqaba Biotechnologies 3300000478 Metagenome Analysis Newbler released per JGI data release policy No Yes litthad@ufs.ac.za Derek Litthauer No Environmental Terrestrial Unclassified Soil Mine Deep mine -28.3 26.75 1876407 5378 2 0 1 0 0.0 Metagenome 3300023182 *Microbiome Permanent Draft Holocene marine sediment microbial communities from Aarhus Bay, Denmark Holocene marine sediment microbial communities from Aarhus Bay, Denmark - M5 Unknown 3300023182 Metagenome Analysis SPAdes v3.5.0 released by JGI data releasing policy No Yes felix.beulig@bios.au.dk Felix Beulig No Environmental Aquatic Sediment Marine Unclassified Holocene Marine Sediment 56.10555556 10.46305556 1907460 2447 1 0 1 0 0.0 Metagenome 3300037335 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 10-14 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037335 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0471 855678876 1656075 307 11 499 13 SRX4415329, SRX8128001 Unrestricted 0.0 Metagenome 3300001490 *Microbiome Draft Forest soil microbial communities from the Amazon forest, Brazil, of fosmid clones Fosmid Clones Derived from Amazon Forest Soil Microbial Communities DOE Joint Genome Institute (JGI) 3300001490 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jmgladden@lbl.gov, JMGladden@lbl.gov John Gladden No Environmental Terrestrial Tropical forest Soil Bulk soil Forest soil -2.5871 -49.041 3532881 3698 0 0 0 0 0.0 Metagenome 3300001925 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from the Tropical South Pacific Ocean - GS041 J. Craig Venter Institute (JCVI) 3300001925 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Oceanic Marine Unclassified Marine -5.93 -108.68694 494549 909 0 0 0 0 0.0 Metagenome 3300025759 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes) (version 4) DOE Joint Genome Institute (JGI) 3300025759 Metagenome Analysis spades v. 3.11.1 Yes Yes chenf@umces.edu; bcampb7@clemson.edu Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.12 -75.25 535056047 1165161 0 0 0 0 SRX3301140, SRX2838766, SRX3301139 Unrestricted 0.0 Metagenome 3300027287 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepA_8d DOE Joint Genome Institute (JGI) 3300027287 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 81608018 168535 81 4 108 5 SRX5245297 Unrestricted 24.42 Metagenome 3300026198 *Microbiome Permanent Draft Anaerobic biogas reactor microbial communites from Washington, USA Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2_B C13 SIP DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026198 Metagenome Analysis spades v. 3.11.1 Yes Yes dacb@uw.edu David Beck Yes 28895946 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic biogas reactor 47.6525 -122.3049 321724704 558953 231 0 383 0 SRX2339137 Unrestricted 0.0 Metagenome 3300069267 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, Pacific Southwest, CA, USA - SJER_025-M-20170315-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069267 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.10878 -119.73228 14176954 45039 174 11 290 21 0.0 Metagenome 3300035525 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B1.10_Sample1.Rodeo10.Well1209 DOE Joint Genome Institute (JGI) 3300035525 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 370374772 635014 313 0 532 0 SRX8346910 Unrestricted 33.97 Metagenome 3300012070 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Florida, USA - TSFL047 MetaG DOE Joint Genome Institute (JGI) 3300012070 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 28.5711 -82.2848 140448343 267593 94 82 183 145 SRX3539499 Unrestricted 0.0 Metagenome 3300025832 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025832 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 27054497, 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 512442302 965645 326 78 469 129 SRX2999738 Unrestricted 0.0 Metagenome 3300006249 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764508039 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006249 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 155433720 256807 112 0 134 0 0.0 Metagenome 3300014072 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00638 Weill Cornell Medical College 3300014072 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.81 -73.94 38024178 58561 26 0 36 0 SRX822605 0.0 Metagenome 3300036873 *Microbiome Permanent Draft Soil microbial communities from a coastal freshwater wetland in North Carolina, United States Soil microbial communities from coastal freshwater wetland in North Carolina, United States - 8NFC DOE Joint Genome Institute (JGI) 3300036873 Metagenome Analysis metaspades v. 3.13.0 Yes Yes peraltaa@ecu.edu Ariane Peralta No Environmental Terrestrial Wetlands Soil Unclassified soil 35.8959 -76.1658 910175577 1548141 355 15 612 19 SRX8387842 Unrestricted 14.45 Metagenome 3300022834 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #472 DOE Joint Genome Institute (JGI) 3300022834 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 150334734 281197 133 4 223 5 SRX4396798 Unrestricted 12.49 Metagenome 3300039605 *Microbiome Permanent Draft Glacier soil microbial communities from Mackay Glacier, Antarctica Glacier soil microbial communities from Mackay Glacier, Antarctica - MGM-3 University of Pretoria 3300039605 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Terrestrial Glacier Soil Unclassified Glacier soil -76.16 162.013 83441362 166055 61 0 106 0 0.0 Metagenome 3300029694 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36982 Beijing Genomics Institute (BGI) 3300029694 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 183342655 224367 118 0 183 0 0.0 Metagenome 3300023099 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L014-104B-1 DOE Joint Genome Institute (JGI) 3300023099 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 637855321 1357314 537 112 782 166 SRX4801456 Unrestricted 10.57 Metagenome 3300001087 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 DOE Joint Genome Institute (JGI) 3300001087 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 47611826 119844 139 43 256 93 SRX3312030 Unrestricted 0.0 Metagenome 3300051100 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Warrenville, Illinois, USA - 51_717_IL_DR_0cm_c3_T1_16O DOE Joint Genome Institute (JGI) 3300051100 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 41.84145 -88.2298 1005409855 1739870 279 0 425 0 Restricted 14.31 Metagenome 3300026890 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 51 (SPAdes) DOE Joint Genome Institute (JGI) 3300026890 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 68233342 155321 64 0 123 0 SRX4340974 Unrestricted 0.0 Metagenome 3300070294 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, Tennessee, USA - GRSM_055-O-20160719-COMP-DNA1 3300070294 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 584769209 1616152 456 30 925 42 0.0 Metagenome 3300006852 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 DOE Joint Genome Institute (JGI) 3300006852 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Host-associated Plants Rhizosphere Roots Soil Populus rhizosphere 35.8444 -83.9599 4145787622 11138798 2622 58 4388 125 SRX2923912 Unrestricted 0.0 Metagenome 3300037094 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 S3 20-24 DOE Joint Genome Institute (JGI) 3300037094 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3531 19.0476 441179175 711624 155 4 227 12 SRX8138174 Unrestricted 19.76 Metagenome 3300012456 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100460 University of Pennsylvania 3300012456 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9200051 25207 14 1 22 1 SRX756538 0.0 Metagenome 3300027793 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom. Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027793 Metagenome Analysis spades v. 3.11.1 Yes Yes rmmckay@bgsu.edu Robert M. McKay No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.69957 -83.2941 978163517 1907834 542 130 778 207 SRX2832453 Unrestricted 0.0 Metagenome 3300070473 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_026-M-20160822-COMP-DNA1 Battelle Memorial Institute 3300070473 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 29.693584 -81.992056 5.43 877377 2938 22 1 22 3 0.0 Metagenome 3300026684 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK08-E (SPAdes) DOE Joint Genome Institute (JGI) 3300026684 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.4 9105426 28276 59 3 114 4 SRX1991360 Unrestricted 0.0 Metagenome 3300035549 *Microbiome Permanent Draft Marine sponge microbial communities from Cabo Pulmo, Mexico Marine sponge microbial communities from Cabo Pulmo, Mexico - S1 Ensenada Center for Scientific Research and Higher Education, Baja California 3300035549 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes fracicala@gmail.com Francesco Cicala No Host-associated Porifera Unclassified Sponge Unclassified marine sponge mesenchyme 24.7899 -110.8903 261748120 449838 130 3 200 2 0.0 Metagenome 3300000580 *Microbiome Draft Forest soil microbial communities from Amazon Forest, Brazil Forest soil microbial communities from Amazon forest - 2010 replicate II A01 DOE Joint Genome Institute (JGI) 3300000580 Metagenome Analysis released based on JGI ITS Yes Yes jorge@uta.edu, jmrodrigues@ucdavis.edu Jorge Rodrigues, Jorge L. Rodrigues Yes 30083144 Environmental Terrestrial Tropical forest Soil Bulk soil Forest soil -10.171667 -62.7875 155587673 419065 241 3 476 7 Unrestricted 0.0 Metagenome 3300024317 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK01 DOE Joint Genome Institute (JGI) 3300024317 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 210507738 553873 275 24 558 36 SRX4547501 Unrestricted 7.34 Metagenome 3300024946 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 32_HOW6 (SPAdes) DOE Joint Genome Institute (JGI) 3300024946 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 74659747 125145 57 7 65 9 SRX2720210 Unrestricted 0.0 Metagenome 3300049295 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA37 DOE Joint Genome Institute (JGI) 3300049295 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 489992525 1240793 573 9 1035 15 Unrestricted 7.4 Metagenome 3300002702 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Biofilm from sections of failed pipe of Encana Pipeline McGill University 3300002702 Metagenome Analysis Released because the data are published No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 55.07 -110.53 289715476 624167 288 1 513 1 0.0 Metagenome 3300001949 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Panama City, Panama - GS022 J. Craig Venter Institute (JCVI) 3300001949 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Oceanic Marine Unclassified Marine 6.492778 -82.90389 76322024 131400 100 0 117 0 0.0 Metagenome 7000000332 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 763901136 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000332 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 150141932 244986 0 0 0 0 0.0 Metagenome 3300005704 *Microbiome Permanent Draft Freshwater microbial communities from Lake Kinneret, Israel Aquatic microbial communities from Lake Kinneret, Israel - sample 2 Macrogen 3300005704 Metagenome Analysis Unkonwn No Yes beja@tx.technion.ac.il Beja O No Environmental Aquatic Lentic Freshwater Unclassified Freshwater 32.7872 35.6176 38140 46 0 0 0 0 0.0 Metagenome 3300011940 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00622 Weill Cornell Medical College 3300011940 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.8 -73.91 25736884 35476 14 0 13 0 SRX822589 0.0 Metagenome 3300038916 *Microbiome Draft Saline water viral communities of the coast of Qinghai Lake, Qinghai province, China Saline water viral communities of the coast of Qinghai Lake, Qinghai province, China - QHH3 Beijing Novogene Bioinformatics Technology Co., Ltd 3300038916 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes 1054738805@qq.com Chengxiang Gu No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 37.19527249 99.82905854 28713445 72572 48 9 136 17 0.0 Metagenome 3300038347 *Microbiome Permanent Draft Laboratory enrichment broth microbial communities from Maryland, USA Laboratory enrichment broth microbial communities from Maryland, USA - RV2 U.S. Food and Drug Administration (FDA) 3300038347 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Lab enrichment Unclassified Defined media Unclassified Laboratory enrichment broth 8430074 14954 19 0 22 0 0.0 Metagenome 3300001069 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN395 DOE Joint Genome Institute (JGI) 3300001069 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Soil 44.20517707 -122.1284473 489359 1531 24 0 49 0 SRX1986910 Unrestricted 0.0 Metagenome 3300029880 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37202R1 Beijing Genomics Institute (BGI) 3300029880 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 169077483 212568 130 0 181 1 0.0 Metagenome 3300022327 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Garden Lake, Rottnest Island (WA - Australia) - GL1GP1 JM85 AGRF 3300022327 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.995604 115.536873 24123057 48159 34 1 54 6 0.0 Metagenome 3300060709 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Santa Rita Experimental Range, Tucson, Arizona, USA - SRER_006-M-20210809-comp-1 DOE Joint Genome Institute (JGI) 3300060709 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Desert Soil Unclassified Terrestrial soil 31.795656 -110.910239 1197382962 2123081 500 12 930 20 Unrestricted 19.91 Metagenome 3300026980 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and P1 (SPAdes) DOE Joint Genome Institute (JGI) 3300026980 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 114973586 168321 71 0 96 0 SRX3311621 Unrestricted 0.0 Metagenome 3300070919 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Alaska, USA - DEJU_045-M-20180621-COMP-DNA1 3300070919 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 15032934 46875 68 20 118 42 0.0 Metagenome 3300003958 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Enrichment cultures from Harmful Algal Blooms in Lake Erie, HABS-00-39863 University of Michigan 3300003958 Metagenome Analysis IDBA-UD v1.1.1 released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lentic Freshwater Unclassified Freshwater -77.611214 163.119356 22522339 25065 17 0 17 0 0.0 Metagenome 3300050016 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 P2 20-24 DOE Joint Genome Institute (JGI) 3300050016 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3535 19.0472 848499664 1294588 242 2 394 5 Restricted 14.29 Metagenome 3300001191 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from University of Liverpool 454_standard_assembled University of Liverpool 3300001191 Metagenome Analysis Newbler v2.8 released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 18337648 28478 19 0 26 0 0.0 Metagenome 3300003617 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNA DOE Joint Genome Institute (JGI) 3300003617 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 379824039 707895 391 35 677 59 SRX2569219 Unrestricted 0.0 Metagenome 3300049642 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MG_050418 DOE Joint Genome Institute (JGI) 3300049642 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 554204014 902097 745 0 1117 3 Unrestricted 21.36 Metagenome 3300008700 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159753524 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008700 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 74308127 116165 113 3 134 4 0.0 Metagenome 3300011644 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00978 Weill Cornell Medical College 3300011644 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.62 -73.81 31569378 44748 8 0 20 0 SRX822940 0.0 Metagenome 3300040512 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_005-M-20160726-COMP-DNA1 Battelle Memorial Institute 3300040512 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 3066063 9326 40 0 45 0 0.0 Metagenome 2236876017 *Microbiome Permanent Draft Saline water concentrator pond microbial communities from Bras del Port saltern, Santa Pola, Spain Saline water concentrator pond microbial communities from Bras del Port saltern, Spain - SS13 GATC-Biotech AG, Konstanz, Germany 2236876017 Metagenome Analysis released per JGI data release policy No Yes abf@us.es Ana Fernandez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline water concentrator pond 38.11 -0.36 370217159 1121319 1215 14 2277 28 0.0 Metagenome 3300007497 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 404239096 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007497 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 71681077 131263 61 0 123 0 0.0 Metagenome 3300027159 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027159 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 170551119 369295 198 50 300 81 SRX2753514 Unrestricted 0.0 Metagenome 7000000150 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human subgingival plaque microbial communities from NIH, USA - visit 1, subject 763435843 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000150 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human 39.0042816 -77.1012173 33879839 75004 0 0 0 0 0.0 Metagenome 3300021280 *Microbiome Permanent Draft Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States - Hamp_Shaw_3 DOE Joint Genome Institute (JGI) 3300021280 Metagenome Analysis spades v. 3.11.1-check Yes Yes zachary.freedman@mail.wvu.edu Zachary Freedman No Environmental Terrestrial Surface mine Soil Reclaimed soil 39.458 -79.073 18953694 54920 84 8 144 10 SRX4031089 Unrestricted 6.93 Metagenome 3300029425 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 079_4_29_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029425 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 207077637 269649 289 0 333 1 0.0 Metagenome 3300013621 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00717 Weill Cornell Medical College 3300013621 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.99 7634238 12910 13 0 14 0 SRX822684 0.0 Metagenome 3300034174 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 28HNS DOE Joint Genome Institute (JGI) 3300034174 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Sub-biocrust Soil Unclassified sub-biocrust soil 34.7856 -115.66 221001259 530722 387 7 710 10 SRX7619821 Unrestricted 8.8 Metagenome 3300043356 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 202-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043356 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.8576 -107.0971 430113923 1224474 467 28 813 70 Unrestricted 6.72 Metagenome 3300009952 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 12 Autonomous University of Barcelona 3300009952 Metagenome Analysis SPAdes-3.8.1-Linux released per JGI data release policy Yes Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 3163288 6044 2 0 3 0 0.0 Metagenome 3300043648 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 349-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043648 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9537 -107.0675 487419314 1362241 646 26 1183 49 Unrestricted 10.28 Metagenome 3300039973 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_014-O-20170620-COMP-DNA1 Battelle Memorial Institute 3300039973 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 19521482 45400 52 4 109 7 0.0 Metagenome 3300041895 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_442 MetaG AgResearch, New Zealand, Mosgeil 3300041895 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1423685325 2898932 290 28 1056 48 0.0 Metagenome 3300014286 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 246_L1_2014-8-29 San Diego State University 3300014286 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 14839561 33367 6 2 14 4 0.0 Metagenome 3300000364 *Microbiome Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Iowa, Native Prairie soil v4 (version 4) DOE Joint Genome Institute (JGI) 3300000364 Metagenome Analysis Artifact filter, partition at k=32, assemble with Velvet at k19-45, Minimus2 released based on JGI ITS Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.0042816 -77.1012173 6.2 3522441772 8508638 55 64 241 55 Unrestricted 0.0 Metagenome 3300013297 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG DOE Joint Genome Institute (JGI) 3300013297 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil miscanthus rhizosphere 42.3948 -85.3738 4811640160 10459582 3447 296 5843 517 SRX3900116 Unrestricted 6.01 Metagenome 3300011387 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00701 Weill Cornell Medical College 3300011387 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.85 -73.92 17159521 22365 6 0 9 0 SRX822668 0.0 Metagenome 3300038980 *Microbiome Permanent Draft Microbial communities from Yellowstone National Park hot springs 2018 Hot spring sediment microbial communities from Steep Cone Outflow 1, Yellowstone National Park, USA - 180602L University of Minnesota Genomics Center 3300038980 Metagenome Analysis SPAdes v. 3.11.0 released by JGI data releasing policy Yes Yes trinityh@umn.edu Trinity Hamilton No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.5666263 -110.8632743 76631469 142361 30 0 46 0 0.0 Metagenome 3300002735 *Microbiome Permanent Draft Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland, that are sulfate-reducing Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland - BIC-A1 borehole 3300002735 Metagenome Analysis 31k Released per Bagnoud Alexandre (Jan 30 2015) No Yes rizlan.bernier-latmani@epfl.ch Rizlan Bernier-Latmani Yes 27739431 Environmental Terrestrial Clay Deep subsurface Unclassified Deep subsurface 47.379 7.1648 7.5-8.5 101737461 210735 85 8 157 22 0.0 Metagenome 3300013875 *Microbiome Permanent Draft Switchgrass metagenome 2014 Rhizosphere microbial communities from switchgrass unharvested rhizosphere in Austin, TX, USA - RS_233 DOE Joint Genome Institute (JGI) 3300013875 Metagenome Analysis Velvet 1.2.07 released by JGI data releasing policy No Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 30.387044 -97.730126 27851225 71819 36 2 75 1 0.0 Metagenome 2037747001 *Microbiome Permanent Draft Coalbed water microbial communities from New Mexico, USA Coalbed microbial communities from New Mexico, USA - water sample 454AllContigs4fna Virginia Polytechnic Institute and State University 2037747001 Metagenome Analysis released per JGI data release policy No Yes biswarup@vt.edu Biswarup Mukhopadhyay No Environmental Aquatic Groundwater Freshwater Coalbed water Coalbed water 36.728056 -108.220833 14140670 20964 17 0 49 0 0.0 Metagenome 3300070552 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_007-M-20180620-COMP-DNA1 Battelle Memorial Institute 3300070552 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 32.974426 -87.42694 5.04-5.89 14403013 45693 60 11 109 17 0.0 Metagenome 3300029816 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P014V6 Beijing Genomics Institute (BGI) 3300029816 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 129569682 153646 108 0 141 0 0.0 Metagenome 7000000305 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 686765762 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000305 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 81400888 145208 0 0 0 0 0.0 Metagenome 3300006075 *Microbiome Permanent Draft Mining for adhesins from protozoa-associated epibionts Protozoa-associated epibionts from sheep rumen, Palmerston North, New Zealand - adhesins screened Leibniz Institute 3300006075 Metagenome Analysis Unknown released per JGI data release policy No Yes filomena.ng@agresearch.co.nz Filomena Ng No Host-associated Mammals Stomach Digestive system Rumen Rumen -40.355 175.6117 939775 3466 0 1 7 1 0.0 Metagenome 3300048824 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 S2 20-24 DOE Joint Genome Institute (JGI) 3300048824 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3532 19.0474 531191703 697153 127 2 166 2 Restricted 22.79 Metagenome 3300014855 *Microbiome Permanent Draft Danish lakes Microbial communities Depth profiles Lake Almind and Hund Sediment microbial communities from Lake Almind, Silkeborg, Region Midtjylland, Denmark - ALS_02.07.12_sediment_5-10cm re-submission with coverage Odense University Hospital 3300014855 Metagenome Analysis MEGAHIT v1.1.1 released by JGI data releasing policy Yes Yes atreusch@biology.sdu.dk Alexander Treusch No Environmental Aquatic Lake Freshwater Sediment Sediment 56.148 9.546 2030699 5482 15 0 26 0 0.0 Metagenome 3300003352 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 DOE Joint Genome Institute (JGI) 3300003352 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 51.62 -128.09 118568907 325842 278 66 456 137 SRX2575218 Unrestricted 0.0 Metagenome 3300008008 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-23 DOE Joint Genome Institute (JGI) 3300008008 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 641392926 1128821 645 7 1071 17 SRX3198638 Unrestricted 0.0 Metagenome 3300000649 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 23JUN2009 epilimnion DOE Joint Genome Institute (JGI) 3300000649 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300035680 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME10Jul2015-rr0105 DOE Joint Genome Institute (JGI) 3300035680 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1401925490 2848105 668 155 1014 239 SRX8202601 Unrestricted 11.7 Metagenome 3300009193 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321 DOE Joint Genome Institute (JGI) 3300009193 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 805944915 1545694 613 87 1003 154 SRX2999545 Unrestricted 0.0 Metagenome 3300040685 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_046-O-20170621-COMP-DNA1 Battelle Memorial Institute 3300040685 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 1049444 3245 30 8 53 14 0.0 Metagenome 3300017741 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 44 SPOT_SRF_2013-06-19 DOE Joint Genome Institute (JGI) 3300017741 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 335137016 800812 72 31 115 61 SRX7280102, SRX7280101 Unrestricted 0.0 Metagenome 3300009519 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_6_150 DOE Joint Genome Institute (JGI) 3300009519 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 402553917 720933 204 2 403 6 SRX3002037 Unrestricted 0.0 Metagenome 3300001360 *Microbiome Permanent Draft Kakapo fecal microbial communities from Codfish Island, New Zealand Kakapo fecal microbial communities from Codfish Island, New Zealand - Kakapo Chick2 New Zealand Genomics Limited 3300001360 Metagenome Analysis released per JGI data release policy No Yes dwai012@aucklanduni.ac.nz, d.waite1986@gmail.com David Waite No Host-associated Birds Large intestine Digestive system Fecal Kakapo fecal -46.77 167.63 159393818 651788 2193 1 4283 22 0.0 Metagenome 3300001742 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Olavius algarvensis symbiont microbial communities from Tuscany, Italy - Type G ELBA extract 3 DOE Joint Genome Institute (JGI) 3300001742 Metagenome Analysis Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 42.8072 10.1411 464639467 1313347 17 15 22 6 SRX2554382 Unrestricted 0.0 Metagenome 3300025805 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/10/14 0.2 um filter (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025805 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 361064273 626220 450 3 693 3 SRX2770556 Unrestricted 0.0 Metagenome 3300031736 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21 DOE Joint Genome Institute (JGI) 3300031736 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1770574848 4470519 599 8 1036 13 SRX5817390 Unrestricted 12.97 Metagenome 3300012220 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100216 University of Pennsylvania 3300012220 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 7902265 22317 18 0 24 0 SRX756683 0.0 Metagenome 3300045485 *Microbiome Permanent Draft Florida Reef Tract Coral Disease Outbreak Coral surface microbial communities from Montastraea cavernosa, offshore reef, Ft. Lauderdale, FL, USA - McD3 -2 University of Florida 3300045485 Metagenome Analysis MEGAHIT v. 1.1.4 released per PI No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified coral surface 26.16 -80.1 147815722 227717 6 7 6 7 0.0 Metagenome 3300002909 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm DOE Joint Genome Institute (JGI) 3300002909 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.73825 -123.6301 168150069 390878 240 9 446 36 SRX2562381 Unrestricted 0.0 Metagenome 3300032892 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5 DOE Joint Genome Institute (JGI) 3300032892 Metagenome Analysis spades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified soil 26.5065 -80.2537 5072719757 9772459 1557 41 2629 56 SRX5666833 Unrestricted 10.15 Metagenome 3300040959 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Estuary water microbial communities from Narragansett Bay, Rhode Island, USA - E1_negO2CPA DOE Joint Genome Institute (JGI) 3300040959 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.9078 -71.5683 323512566 509796 179 14 236 14 SRX9640652 Unrestricted 19.56 Metagenome 3300009646 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_17_150 DOE Joint Genome Institute (JGI) 3300009646 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 465128805 832520 260 7 450 10 SRX3006033 Unrestricted 0.0 Metagenome 3300011369 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01072 Weill Cornell Medical College 3300011369 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.8 -73.94 11760305 14632 8 0 11 0 SRX823027 0.0 Metagenome 3300027032 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N2_0_30 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027032 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380273 -119.2723038 90721411 250950 223 4 423 10 SRX2523201 Unrestricted 0.0 Metagenome 3300009358 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Final time point T65 (2) (live) benzoate enrichments of Methanogenic microbial communities using Athabasca oil sands as inoculum DE NOVO (2) Shell Corporation 3300009358 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 80230486 199911 80 4 193 0 0.0 Metagenome 3300020284 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556128-ERR598952) CEA Genoscope 3300020284 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 2.0663 -84.5304 106275232 271224 171 4 270 13 0.0 Metagenome 3300006183 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_500_biof - 1398105537950 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300006183 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 314273670 557500 205 7 278 16 SRX2866426, SRX2866425 Unrestricted 0.0 Metagenome 3300002229 *Microbiome Permanent Draft Marine microbial communities from the Baltic Sea examining degradability of arctic, terrigenous carbon compounds in the sea Marine microbial communities from the Baltic Sea - S2t7 FKBb (102N) Karolinska Institutet 3300002229 Metagenome Analysis released per JGI data release policy No Yes daniel.herlemann@io-warnemuende.de, daniel.herlemann@emu.ee Daniel Herlemann, Daniel P. Herlemann No Environmental Aquatic Oceanic Marine Unclassified Marine 57.305 20.074 216790088 1021602 186 55 358 81 0.0 Metagenome 3300011555 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00495 Weill Cornell Medical College 3300011555 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.84 -73.86 21665571 34975 9 0 23 0 SRX822464 0.0 Metagenome 3300012900 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1 DOE Joint Genome Institute (JGI) 3300012900 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 669344363 1628464 782 39 1423 63 SRX3297422 Unrestricted 4.2 Metagenome 2228664022 *Microbiome Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Iowa, Native Prairie soil v3 (version 3) DOE Joint Genome Institute (JGI) 2228664022 Metagenome Analysis Artifact filter, partition at k=32, assemble with Velvet at k19-45, Minimus2 released based on JGI ITS No Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.0042816 -77.1012173 6.2 603074046 1472344 29 0 197 0 Unrestricted 0.0 Metagenome 3300070712 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lajas Experimental Station, Puerto Rico, USA - LAJA_004-M-20171129-COMP-DNA1 3300070712 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 16487836 52585 36 8 71 12 0.0 Metagenome 3300005188 *Microbiome Permanent Draft Mallorca 2014 E5 E5 T-1 University of Alicante 3300005188 Metagenome Analysis IDBA 1.1.1 PRE correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline 39.338015 3.051796 19014959 53988 1 0 0 0 0.0 Metagenome 3300043764 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Para, Brazil - FS32 DOE Joint Genome Institute (JGI) 3300043764 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -3.3008 -54.8904 1114154123 2466478 402 3 669 8 Unrestricted 9.07 Metagenome 3300060444 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210609_13_21 DOE Joint Genome Institute (JGI) 3300060444 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 650176127 950171 283 192 350 231 Unrestricted 39.67 Metagenome 3300028873 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_1 DOE Joint Genome Institute (JGI) 3300028873 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 1144282664 2274855 579 140 754 267 SRX5355826 Unrestricted 0.0 Metagenome 3300013666 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01107 Weill Cornell Medical College 3300013666 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.66 -73.92 15006833 20559 11 0 16 0 SRX823062 0.0 Metagenome 3300070278 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Alaska, USA - DEJU_048-M-20180621-COMP-DNA1 3300070278 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 96739862 271008 108 11 237 19 0.0 Metagenome 3300013139 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100791 University of Pennsylvania 3300013139 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3363342 5479 6 1 15 1 SRX756063 0.0 Metagenome 3300047329 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Frasne, France - Sphagnum fallax 5C_SF_FR DOE Joint Genome Institute (JGI) 3300047329 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 1340585575 2438263 545 163 904 285 SRX14787540 Unrestricted 8.06 Metagenome 3300021216 *Microbiome Permanent Draft Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge Stylissa sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - St7is 200bp-microeukaryotes University of New South Wales 3300021216 Metagenome Analysis IDBA-UD released by JGI data releasing policy Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Stylissa sp. (marine sponge) -0.940556 150.816667 881190 1493 0 0 0 0 0.0 Metagenome 3300015602 *Microbiome Permanent Draft Wastewater microbial communities from the domestic sewers Wastewater microbial communities from domestic sewers in Singapore - Site A Oct Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300015602 Metagenome Analysis CLC workbench released by JGI data releasing policy No Yes erinscm@nus.edu.sg Charmaine Ng No Engineered Wastewater Unclassified Sewage Unclassified Wastewater 1.28362 103.859825 123228225 159743 29 0 26 0 0.0 Metagenome 3300004884 *Microbiome Permanent Draft Ecklonia radiata associated microbial communities from Long Bay, Malabar Australia Ecklonia radiata associated microbial communities from Long Bay, Malabar Australia - H1 University of New South Wales 3300004884 Metagenome Analysis idba-ud released per JGI data release policy Yes Yes z.qiu@student.unsw.edu.au Zhiguang Qiu No Host-associated Algae Unclassified Unclassified Unclassified Ecklonia radiata associated 61137492 95618 36 40 76 59 0.0 Metagenome 3300029678 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37271R1 Beijing Genomics Institute (BGI) 3300029678 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 162383013 192265 111 1 171 2 0.0 Metagenome 3300029333 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 037_10_29_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029333 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 220762600 268028 251 0 318 0 0.0 Metagenome 3300053745 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHL_03 DOE Joint Genome Institute (JGI) 3300053745 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.40849 -82.168434 243592771 368271 3 13 10 12 Restricted 171.06 Metagenome 2035918007 *Microbiome Permanent Draft Coalbed water microbial communities from New Mexico, USA Coalbed microbial communities from New Mexico, USA - 340 Virginia Polytechnic Institute and State University 2035918007 Metagenome Analysis released per JGI data release policy No Yes biswarup@vt.edu Biswarup Mukhopadhyay No Environmental Aquatic Groundwater Freshwater Coalbed water Coalbed water 36.728056 -108.220833 106389413 243764 159 0 234 0 0.0 Metagenome 3300012604 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100514 University of Pennsylvania 3300012604 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 18779276 41674 36 7 63 9 SRX756240 0.0 Metagenome 3300045539 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mississippi River, Illinois, USA - NASQAN2012_130 DOE Joint Genome Institute (JGI) 3300045539 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9511 -90.3712 400967165 880173 340 124 530 195 Unrestricted 0.0 Metagenome 3300004219 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 109_LOW13 DOE Joint Genome Institute (JGI) 3300004219 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 51654899 114796 29 0 68 1 SRX2721184 Unrestricted 0.0 Metagenome 3300000756 *Microbiome Permanent Draft Freshwater and sediment microbial communities from a dead zone in Lake Erie, USA Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 DOE Joint Genome Institute (JGI) 3300000756 Metagenome Analysis Yes Yes rmmckay@bgsu.edu Robert McKay, Robert M. McKay No Environmental Aquatic Lentic Freshwater Hypolimnion Freshwater and sediment 41.77 -81.73 387873697 897169 331 125 554 165 SRX3311442 Unrestricted 0.0 Metagenome 3300003130 *Microbiome Permanent Draft Continuous culture Bioreactor microbial community inoculated with sediment from German Wadden Sea Bioreactor microbial community inoculated from Wadden Sea, Germany - 23 days of incubation Bielefeld University, Max Planck Institute for Marine Microbiology 3300003130 Metagenome Analysis Newbler v. 2.8 Made public because these are downloaded from Genbank No Yes mstrous@mpi-bremen.de Marc Strous Yes 23227024 Engineered Bioreactor Marine sediment inoculum Continuous culture Unclassified Continuous culture Bioreactor 54.537548 8.400555 21133520 28257 24 0 25 0 0.0 Metagenome 3300042706 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from Lilliput hydrothermal vent, Atlantic Ocean - BspSym_Li_5_5-4 Re-assembly Max Planck Institute for Marine Microbiology 3300042706 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills -9.5481672 -13.2088327 189381433 178948 3 4 7 5 ERX3367176 0.0 Metagenome 3300004690 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Jul07 (version 2) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300004690 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 85338789 281789 102 67 192 257 SRX2565290 Unrestricted 0.0 Metagenome 3300010944 *Microbiome Permanent Draft Wastewater viral communities and vesicles from water purifying plant in Alicante,Spain Wastewater viral communities and vesicles from water purifying plant in Alicante,Spain - replicate Ab1 Autonomous University of Barcelona 3300010944 Metagenome Analysis SPAdes-3.8.1-Linux released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Engineered Wastewater Unclassified Industrial wastewater Unclassified wastewater 38.34 -0.48 58818695 132347 1 0 2 0 0.0 Metagenome 3300038684 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Realigned salt marsh sediment microbial communities from Mersea Island, United Kingdom - S MIRM 2A University of York 3300038684 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Realigned salt marsh sediment 51.79675 0.921833 16356020 45414 32 0 60 0 0.0 Metagenome 3300009759 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_4_10 DOE Joint Genome Institute (JGI) 3300009759 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 258970574 549793 205 19 356 25 SRX3001582 Unrestricted 0.0 Metagenome 3300011768 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01109 Weill Cornell Medical College 3300011768 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.66 -73.91 43286789 56488 19 0 36 0 SRX823064 0.0 Metagenome 3300014699 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00164 Weill Cornell Medical College 3300014699 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.84 -73.93 51413162 81601 17 0 35 0 SRX822143 0.0 Metagenome 3300000107 *Microbiome Draft Shipworm microbial communities from Puget Sound, Washington USA, from multiple species of wood-boring bivalves (shipworms) Microbial communities from multiple species of Shipworm: Sample from Bankia setacea gill BSg4 DOE Joint Genome Institute (JGI) 3300000107 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes distel@oglf.org Daniel Distel, Dan Distel No Host-associated Mollusca Gills Respiratory system Extracellular Shipworm 47.85072 -122.33843 574332630 1333776 12 17 19 3 Unrestricted 0.0 Metagenome 3300019750 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLT_6-7_MG DOE Joint Genome Institute (JGI) 3300019750 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 158136495 384343 246 27 491 55 SRX3983468 Unrestricted 4.14 Metagenome 3300042157 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 DOE Joint Genome Institute (JGI) 3300042157 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.201 -97.9447 519794973 1342430 622 102 1255 146 Unrestricted 7.7 Metagenome 3300001584 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP2097 DOE Joint Genome Institute (JGI) 3300001584 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 14.53 -118.77 31712517 80685 44 2 79 8 SRX1982385 Unrestricted 0.0 Metagenome 3300065644 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 815 in Dunmore, Alberta, Canada - S00JY_0155 Microbiome Insights 3300065644 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.5656823 -110.2741187 79769437 118479 41 0 102 0 0.0 Metagenome 3300010323 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG DOE Joint Genome Institute (JGI) 3300010323 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 783699490 1815429 605 21 1095 44 SRX2525076 Unrestricted 0.0 Metagenome 3300011715 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00857 Weill Cornell Medical College 3300011715 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.7 -73.81 33639601 50500 22 0 27 0 SRX822823 0.0 Metagenome 3300026916 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN109 (SPAdes) DOE Joint Genome Institute (JGI) 3300026916 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 39.23550963 -121.2836963 11292302 32674 110 8 181 12 SRX3311732, SRX3311731 Unrestricted 0.0 Metagenome 3300045820 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - G1-R2-B DOE Joint Genome Institute (JGI) 3300045820 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.048 318260027 632953 146 18 265 27 Unrestricted 9.95 Metagenome 3300026347 *Microbiome Permanent Draft Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 PU4 DOE Joint Genome Institute (JGI) 3300026347 Metagenome Analysis spades v. 3.11.1 Yes Yes ccraft@indiana.edu Chris Craft No Environmental Aquatic Wetlands Freshwater Sediment sediment 31.3377 -81.4644 85039952 250694 299 12 590 18 SRX4796523 Unrestricted 6.55 Metagenome 3300000370 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2 DOE Joint Genome Institute (JGI) 3300000370 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 323358 945 37 3 41 3 SRX1986446, SRX2021679, SRX1986447 0.0 Metagenome 3300014642 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01355 Weill Cornell Medical College 3300014642 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.84 -73.84 24606809 34000 12 0 15 0 SRX823295 0.0 Metagenome 3300001398 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample F53-3 deep-092012 DOE Joint Genome Institute (JGI) 3300001398 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 205978626 453243 175 7 278 12 SRX1987723 Unrestricted 0.0 Metagenome 3300030041 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_1 DOE Joint Genome Institute (JGI) 3300030041 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 1034257408 1903262 559 134 847 186 SRX5356825 Unrestricted 11.15 Metagenome 7000000527 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763496533 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000527 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 87125891 158500 0 0 0 0 0.0 Metagenome 3300029740 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36158 Beijing Genomics Institute (BGI) 3300029740 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 188631485 238670 127 0 177 1 0.0 Metagenome 3300029362 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 053_3_13_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029362 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 281854120 364730 254 0 380 0 0.0 Metagenome 3300040814 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Seawater microbial communities from Western North Atlantic Ocean - Oce3_MesoD DOE Joint Genome Institute (JGI) 3300040814 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Oceanic Marine Unclassified seawater 28.8675 -77.6862 712435043 1181123 413 38 709 56 SRX9641566 Unrestricted 14.8 Metagenome 3300034160 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_03S_18 DOE Joint Genome Institute (JGI) 3300034160 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9141 -147.8344 617969403 1516235 489 19 861 39 SRX7633916 Unrestricted 8.23 Metagenome 3300000245 *Microbiome Permanent Draft Hypersaline viral and bacterial communities from Bras del Port, Santa Pola, Spain Hypersaline viral and bacterial communities from Bras del Port, Santa Pola, Spain - Pena Hueca_Large contigs Lifesequencing S.L. 3300000245 Metagenome Analysis released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Unclassified Hypersaline samples 39.516667 -3.333333 3486415 7544 0 0 0 0 0.0 Metagenome 3300040289 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 032B_R1 University of Maryland 3300040289 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.19838333 24.964875 6426017 13375 16 0 23 0 0.0 Metagenome 3300016357 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 DOE Joint Genome Institute (JGI) 3300016357 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes pettridge2@llnl.gov; campbell87@llnl.gov Jennifer Pett-Ridge; Ashley Campbell No Environmental Terrestrial Tropical forest Soil Unclassified Soil 18.321 -65.8172 2907125209 6330077 993 39 1802 69 SRX5296075, SRX3604132 Unrestricted 0.0 Metagenome 3300031626 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - CB21_surface DOE Joint Genome Institute (JGI) 3300031626 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified Marine 74.0136 -139.5971 568213860 1244369 283 221 417 341 SRX5797821 Unrestricted 20.59 Metagenome 3300049286 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MB11 DOE Joint Genome Institute (JGI) 3300049286 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 11030717 27465 62 3 109 7 Unrestricted 25.65 Metagenome 3300038461 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-2-X0 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300038461 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 607233040 1379518 571 4 935 5 SRX8137906, SRX8137905 Unrestricted 0.0 Metagenome 3300069520 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_058-O-20170718-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069520 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 21044106 66179 104 16 201 23 0.0 Metagenome 3300028829 *Microbiome Permanent Draft Deep ocean water column microbial communities from Yap Trench, western Pacific Ocean Seawater microbial communities from Yap Trench, western Pacific Ocean - 37I-Yap-CTD02-300m 2000bp_Newsun Novogene 3300028829 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Ocean trench Marine Unclassified seawater 9.87 138.5 1306545025 1437012 407 61 383 52 0.0 Metagenome 3300040267 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_049-M-20170621-COMP-DNA1 Battelle Memorial Institute 3300040267 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 7662479 22174 46 10 73 9 0.0 Metagenome 3300019376 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Bagasse, Gen0, Rep 3, Penicillin and Streptomycin DOE Joint Genome Institute (JGI) 3300019376 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4148 -119.8405 1116798222 2025830 1778 908 2950 1630 SRX3963068 Unrestricted 24.09 Metagenome 3300003483 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Archaeal communities from Yellowstone National Park, Wyoming, USA - Archaeal consortia 2 (NAG2) MetaG DOE Joint Genome Institute (JGI) 3300003483 Metagenome Analysis Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Unclassified Thermal springs Unclassified Hot spring 44.376 -110.69 8490258 10642 3 0 3 0 SRX2577329 Unrestricted 0.0 Metagenome 3300032097 *Microbiome Permanent Draft Microbial communities from the deep biosphere Fracture brine microbial communities fom Vermilion Range, Minnesota, USA - DDH932 re-assembly The Marine Biological Laboratory 3300032097 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Fracking water Deep subsurface Unclassified Fracture brine 47.82333 -92.23722 52943433 90474 47 0 82 0 SRX2058518 0.0 Metagenome 3300001153 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M3 DOE Joint Genome Institute (JGI) 3300001153 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 3923358 12046 53 10 121 16 SRX3311912 Unrestricted 0.0 Metagenome 3300027837 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_3 DOE Joint Genome Institute (JGI) 3300027837 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Strait Marine Unclassified seawater 49.2166667 -123.5333333 859415036 2240630 722 44 1330 96 SRX5244018 Unrestricted 8.56 Metagenome 3300023368 *Microbiome Permanent Draft Hydrothermal Fe-rich Mat Reference Genomes Hydrothermal Fe-rich mat microbial community from Snakepit Site, Mid-Atlantic Ridge, Atlantic Ocean - 667-BS4 University of Delaware 3300023368 Metagenome Analysis metaSPAdes v. 3.10.0 Metagenomes associated with bioRxiv doi:10.1101/722066 Yes Yes mcallis@uw.edu Sean McAllister No Environmental Aquatic Hydrothermal vents Marine Microbial mats Hydrothermal Fe-rich mat 23.369112 -44.950984 275647014 431132 148 4 255 11 0.0 Metagenome 3300002625 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A1w-12 DOE Joint Genome Institute (JGI) 3300002625 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 219251 756 32 2 35 2 SRX1991153 Unrestricted 0.0 Metagenome 3300047373 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_160120.NP1 DOE Joint Genome Institute (JGI) 3300047373 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 925432527 1882100 445 62 694 121 Unrestricted 15.53 Metagenome 3300027511 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S1_20_30 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027511 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen Yes 29920461 Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37229149 -119.2718121 218031914 549808 216 1 408 2 SRX2523178 Unrestricted 0.0 Metagenome 3300047638 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA116-TGU DOE Joint Genome Institute (JGI) 3300047638 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6772 -83.4783 503945016 1246911 273 27 510 47 Unrestricted 9.13 Metagenome 3300015197 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6B, Proglacial plain, adjacent to northern proglacial tributary) University of Bristol 3300015197 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.155586 -50.08499 5.6 228570150 518496 174 3 266 4 0.0 Metagenome 3300011790 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00770 Weill Cornell Medical College 3300011790 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -73.94 39926843 59869 23 0 34 0 SRX822736 0.0 Metagenome 3300035254 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #282 DOE Joint Genome Institute (JGI) 3300035254 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 316381307 599569 129 27 188 57 SRX7706776, SRX7706775 Unrestricted 0.0 Metagenome 3300006430 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T18 (3) (BES), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006430 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 25150723 51956 41 0 44 1 0.0 Metagenome 3300025261 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025261 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.9082 -79.0499 273030715 412638 84 0 116 0 SRX2562214 Unrestricted 0.0 Metagenome 3300021138 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion v4 DOE Joint Genome Institute (JGI) 3300021138 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.0412 -89.6864 270029614 526955 136 56 233 77 Unrestricted 0.0 Metagenome 3300010212 *Microbiome Permanent Draft Phototrophic microbial communities Littoral zone phototrophic microbial communities from Lake Waban, Wellesley, MA - FCS17a Marine Biological Laboratory 3300010212 Metagenome Analysis CLC released per JGI data release policy No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Lake Freshwater Sediment littoral 42.2876 -71.30117 90775574 103993 28 0 47 0 0.0 Metagenome 3300064900 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 687 in Warspite, Alberta, Canada - S00JY_0649 Microbiome Insights 3300064900 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 54.0558482 -112.3659904 21438850 32482 26 0 46 0 0.0 Metagenome 3300032252 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Coastal sediment microbial communities from Maine, United States - Eddy sediment 2 cm DOE Joint Genome Institute (JGI) 3300032252 Metagenome Analysis spades v. 3.13.0 Yes Yes jbeam@bigelow.org; demerson@bigelow.org Jake Beam; David Emerson No Environmental Aquatic Coastal Marine Sediment sediment 43.9948 -69.6486 1051106086 2401067 830 27 1437 63 SRX5822359 Unrestricted 8.59 Metagenome 3300025450 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Aug09 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025450 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 207453073 408329 107 31 154 45 SRX2565946 Unrestricted 0.0 Metagenome 3300001799 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_1A DOE Joint Genome Institute (JGI) 3300001799 Metagenome Analysis Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 61436542 157995 97 3 146 3 SRX3321851 Unrestricted 0.0 Metagenome 3300043597 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 122-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043597 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9826 -107.0101 247736214 684567 336 18 628 40 Unrestricted 7.59 Metagenome 3300002273 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 29JUN2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002273 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 26961083 69379 101 24 147 43 SRX1989776 Unrestricted 0.0 Metagenome 3300049072 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - C1_A_BS (version 2) DOE Joint Genome Institute (JGI) 3300049072 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 189444611 419130 526 27 1119 36 Unrestricted 0.0 Metagenome 3300002494 *Microbiome Permanent Draft Hot spring microbial communities from Mammoth Springs in Yellowstone National Park, Montana, USA Hot spring microbial communities from Mammoth Springs in Yellowstone National Park, Montana, USA - YNG_F_2014_metagenome 3300002494 Metagenome Analysis released by JGI data releasing policy No Yes Dr. Bruce W. Fouke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 19460798 27984 25 0 42 0 0.0 Metagenome 3300021545 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge C. singaporensis associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - co46is 200bp no Eukaryotes last University of New South Wales 3300021545 Metagenome Analysis IDBA-UD released by Emmanuelle BOTTE Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Coelocarteria singaporensis (marine sponge) -9.8241 150.825833 68024181 142550 74 3 105 8 0.0 Metagenome 3300000692 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 25 DOE Joint Genome Institute (JGI) 3300000692 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 7426224 22185 31 0 56 1 SRX4340639 Unrestricted 0.0 Metagenome 3300061725 *Microbiome Permanent Draft Sediment archaeal communities from Los Azufres geothermal field, Michoacan, Mexico Sediment microbial communities from Los Azufres geothermal field, Michoacan, Mexico - S4 Macrogen Inc 3300061725 Metagenome Analysis SPAdes v. 3.12.0 No Yes roberto.marin.ibq@gmail.com Roberto Marin No Environmental Aquatic Unclassified Sediment Unclassified Sediment 19.78158323 -100.65812998 264408747 428091 122 13 149 35 0.0 Metagenome 3300032181 *Microbiome Permanent Draft Microbial communities from various environments in Magnetic Island Reef, Townsville, Australia Seawater microbial communities from Magnetic Island Reef, Townsville, Australia - 36326 AGRF 3300032181 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes b.glasl@aims.gov.au Bettina Glasl No Environmental Aquatic Coastal Marine Unclassified Seawater -19.1531 146.8641 923179992 2079389 455 49 574 151 0.0 Metagenome 3300014295 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLB_D1 DOE Joint Genome Institute (JGI) 3300014295 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.197102 -122.010033 242362701 578611 328 4 618 8 SRX7180843 Unrestricted 0.0 Metagenome 3300054082 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_20_100 re-annotation DOE Joint Genome Institute (JGI) 3300054082 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 340790101 603578 192 1 322 0 SRX3005976 0.0 Metagenome 3300027063 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 37 (SPAdes) DOE Joint Genome Institute (JGI) 3300027063 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 156820484 368462 149 0 263 2 SRX1984844 Unrestricted 0.0 Metagenome 3300025534 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-1-D (SPAdes) DOE Joint Genome Institute (JGI) 3300025534 Metagenome Analysis spades v. 3.11.1 Yes Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 218641455 336093 259 16 304 26 SRX2588616 Unrestricted 0.0 Metagenome 3300041886 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_490 MetaG AgResearch, New Zealand, Mosgeil 3300041886 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1429791668 2711752 264 32 968 43 0.0 Metagenome 3300027324 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S2_50_60 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027324 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228379 -119.2717467 181874690 476881 243 4 373 11 SRX2523281 Unrestricted 0.0 Metagenome 3300021406 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O DOE Joint Genome Institute (JGI) 3300021406 Metagenome Analysis spades v. 3.11.1-check Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 3250723065 7123599 976 178 1752 284 SRX4022441 Unrestricted 8.99 Metagenome 3300027751 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027751 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 676423052 1470343 704 111 1176 195 SRX2753522 Unrestricted 0.0 Metagenome 3300043078 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - Beaver1Rectum1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043078 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Rectum rectum 49.18 -122.54 220924357 430830 496 11 861 18 SRX8344628 Unrestricted 26.69 Metagenome 3300002478 *Microbiome Permanent Draft Hoatzin crop microbial communities from Cojedes, Venezuela Hoatzin crop microbial communities from Cojedes, Venezuel, sample from Protozoan 21 v1 DOE Joint Genome Institute (JGI) 3300002478 Metagenome Analysis Newbler and/or Velvet released based on JGI ITS Yes Yes sgtringe@lbl.gov, maria.dominguez1@upr.edu; fgodoyvitorino@gmail.com Susannah Tringe, Maria Gloria Dominguez-Bello; Filipa Godoy Vitorino No Host-associated Birds Esophagus Digestive system Crop Hoatzin crop 8.956944 -68.299167 5960614 9814 3 7 0 14 Unrestricted 0.0 Metagenome 3300042520 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Oct2012-rr0652 DOE Joint Genome Institute (JGI) 3300042520 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1123831464 1738753 449 98 585 131 Unrestricted 21.49 Metagenome 3300025037 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from Cariaco Basin, Caribbean Sea - 24_WHOI_OMZ (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025037 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 10.847 -65.114 59878164 87061 49 0 29 0 SRX7410045 Unrestricted 0.0 Metagenome 3300038426 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P4_D10 DOE Joint Genome Institute (JGI) 3300038426 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 419600906 575807 160 0 225 0 SRX9472086 Unrestricted 43.5 Metagenome 3300014877 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT366_16_10D DOE Joint Genome Institute (JGI) 3300014877 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9228 -106.9515 249553909 566431 255 6 492 11 SRX3780471 Unrestricted 4.26 Metagenome 3300046689 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere DOE Joint Genome Institute (JGI) 3300046689 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1209 -123.2703 1315242681 2104559 313 99 568 129 Unrestricted 13.45 Metagenome 3300039209 *Microbiome Permanent Draft Lettuce associated viral communities from produce distribution center in Michigan, USA Romaine lettuce associated viral communities from produce distribution center in Michigan, USA - DR4 Michigan State University 3300039209 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Romaine lettuce 2173102 4024 10 6 17 8 SRX1433138 0.0 Metagenome 3300001882 *Microbiome Permanent Draft Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils (2) Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils - Sample11 3300001882 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Terrestrial Unclassified Soil Grasslands Grassland soil 23.850674 69.734802 0 0 0 0 0 0 0.0 Metagenome 3300007140 *Microbiome Permanent Draft Cephalotes ants gut microbiomes Ant gut microbial communities from Cephalotes pallens, Brazil Harvard University 3300007140 Metagenome Analysis IDBA-UD released by Yi Hu Yes Yes pl356@drexel.edu, yihu.bnu@gmail.com Piotr Lukasik, Yi Hu No Host-associated Arthropoda: Insects Gut Digestive system Unclassified ant gut -19.11 -48.24 148001537 299550 34 1 50 2 0.0 Metagenome 3300006057 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012 DOE Joint Genome Institute (JGI) 3300006057 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment watersheds 41.5935 -78.5142 4175771866 14579997 3491 207 6655 406 SRX2839554 Unrestricted 0.0 Metagenome 3300039929 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_006-M-5-30-20130726-GEN-DNA1 Argonne National Laboratory 3300039929 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 20826683 52636 51 2 82 2 0.0 Metagenome 3300049210 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - B6_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049210 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 580906124 1296024 510 15 995 29 Unrestricted 0.0 Metagenome 3300013857 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room gowning area microbial communities from NASA Jet Propulsion Laboratory, California, USA - Floor swab, replicate A, treated with PMA SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300013857 Metagenome Analysis SPAdes v3.10.0 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1991 -118.1715 714757 1495 2 0 1 0 Unrestricted 0.0 Metagenome 3300040696 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Jornada LTER, Desert Southwest, NM, USA - JORN_045-M-20170808-COMP-DNA1 Battelle Memorial Institute 3300040696 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Desert Terrestrial soil 32.59068 -106.84254 1076495 3183 11 0 22 0 0.0 Metagenome 3300000079 *Microbiome Draft Cattle and sheep rumen microbial communities from New Zealand, for comparative studies Sheep rumen microbial communities from New Zealand - High methane DOE Joint Genome Institute (JGI) 3300000079 Metagenome Analysis velvet released based on JGI ITS No Yes nckyrpides@lbl.gov Nikos Kyrpides Yes 24907284 Host-associated Mammals Stomach Digestive system Rumen Sheep rumen -42.26 171.6 160232843 322228 455 16 832 16 Unrestricted 0.0 Metagenome 3300042839 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185 NMDC pilot DOE Joint Genome Institute (JGI) 3300042839 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92030701 -106.94839471 1453419904 3679238 830 25 1518 60 SRX5354723 0.0 Metagenome 3300044750 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 308-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044750 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9065 -107.0289 465526945 1154027 408 41 760 82 Unrestricted 8.13 Metagenome 3300011577 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00682 Weill Cornell Medical College 3300011577 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.78 -73.98 22763424 37225 14 0 22 0 SRX822649 0.0 Metagenome 3300043094 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver proximal colon microbial communities from Maple Ridge, British Columbia, Canada - Beaver5Prox.Colon1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043094 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Proximal colon proximal colon 49.18 -122.54 236498168 494409 464 15 761 26 SRX8346448 Unrestricted 36.98 Metagenome 3300009076 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511 DOE Joint Genome Institute (JGI) 3300009076 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 27054497, 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 565609180 1036432 468 68 725 148 SRX2999538 Unrestricted 0.0 Metagenome 3300008561 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 159713063 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008561 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 82126133 102466 65 0 103 0 0.0 Metagenome 3300040143 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_010-M-20160729-COMP-DNA1 Battelle Memorial Institute 3300040143 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 10760523 32342 108 4 173 6 0.0 Metagenome 3300026815 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4w-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026815 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 32121306 102977 129 1 228 4 SRX1991258 Unrestricted 0.0 Metagenome 3300045496 *Microbiome Permanent Draft Florida Reef Tract Coral Disease Outbreak Coral surface microbial communities from Montastraea cavernosa, offshore reef, Ft. Lauderdale, FL, USA - McGH -2 University of Florida 3300045496 Metagenome Analysis MEGAHIT v. 1.1.4 released per PI No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified coral surface 26.16 -80.1 544381971 826778 2 13 3 24 0.0 Metagenome 3300043770 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 009-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043770 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9579 -106.9845 253396304 705629 461 51 995 105 Unrestricted 8.19 Metagenome 3300026868 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 32 (SPAdes) DOE Joint Genome Institute (JGI) 3300026868 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 55436352 137619 72 2 146 4 SRX4340710 Unrestricted 0.0 Metagenome 3300030206 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from adenoma patient in Ann Arbor, USA - MG100186 University of Michigan 3300030206 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 42.28 -83.74 12226656 20842 20 0 41 0 0.0 Metagenome 3300046667 *Microbiome Permanent Draft Soil microbial communities from Blodgett Forest Research Station, California, USA Soil microbial communities from Blodgett Forest Research Station, California, USA - BWE201406033H1020 DOE Joint Genome Institute (JGI) 3300046667 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.912 -120.6612 173615150 322972 220 41 449 45 Unrestricted 19.95 Metagenome 3300014956 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS50_3 University of Hohenheim 3300014956 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 134834199 212501 91 0 124 0 0.0 Metagenome 3300049855 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from New York, USA - plattekill_2019_sed_WHONDRS-S19S_0052 DOE Joint Genome Institute (JGI) 3300049855 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 42.13187 -74.69563 200082357 447303 332 9 619 22 Restricted 0.0 Metagenome 3300025863 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP1788 (SPAdes) DOE Joint Genome Institute (JGI) 3300025863 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 9.22 -163.53 143873797 278579 136 0 222 0 SRX1982357 Unrestricted 0.0 Metagenome 3300029968 *Microbiome Permanent Draft Fecal microbial communities from free-living howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from free-living howler monkeys from Sao Paulo Zoo, Brazil - Ind. 4, S6 Reanalysis Center for Advanced Technologies in Genomics, Sao Paulo University 3300029968 Metagenome Analysis metaSPAdes v. 3.12.0 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 70582456 125445 116 3 132 6 0.0 Metagenome 3300041810 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - A_36_wk_4 DOE Joint Genome Institute (JGI) 3300041810 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9841 -106.97 160853370 464426 260 26 464 45 SRX14808525 Unrestricted 7.36 Metagenome 3300013731 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100610 University of Pennsylvania 3300013731 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17886341 41767 19 0 30 0 SRX756484 0.0 Metagenome 3300013976 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01126 Weill Cornell Medical College 3300013976 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.92 6153403 5857 4 0 6 0 SRX823081 0.0 Metagenome 3300042083 *Microbiome Permanent Draft Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - E_c7.2 Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042083 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1237 -89.1404 779400719 804043 3 9 6 10 SRX5234781 0.0 Metagenome 3300029048 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 387_M Beijing Genomics Institute (BGI) 3300029048 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 123582257 178186 117 0 173 0 ERX491128 0.0 Metagenome 3300001992 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot19B 3300001992 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 26637 155 4 2 1 2 0.0 Metagenome 3300001374 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY88_21 J. Craig Venter Institute (JCVI) 3300001374 Metagenome Analysis released per JGI data release policy No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 284463924 893003 43 34 102 49 0.0 Metagenome 3300037356 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 C-2-X1 DOE Joint Genome Institute (JGI) 3300037356 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3544 19.048 614197944 1317039 453 12 719 14 SRX9097216 Unrestricted 8.0 Metagenome 3300036829 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in California, United States - CAC_2 DOE Joint Genome Institute (JGI) 3300036829 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil 35.5 -121.0 2603396724 4185982 576 136 1009 173 SRX8385143 Unrestricted 15.02 Metagenome 3300025226 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025226 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 112853301 135217 40 1 38 2 SRX2770675 Unrestricted 0.0 Metagenome 3300028606 *Microbiome Permanent Draft Microbial communities from Yellowstone National Park hot springs 2017 Hot spring sediment microbial communities from Rabbit Creek Outflow 1, Yellowstone National Park, USA - 170626A University of Minnesota 3300028606 Metagenome Analysis SPAdes v. 3.11.0 released by JGI data releasing policy Yes Yes trinityh@umn.edu Trinity Hamilton No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.5209 -110.8122 9.141 114093415 252304 54 1 78 0 0.0 Metagenome 3300044510 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Towuti Lake, South Sulawesi, Indonesia - Towuti_90m_2014 DOE Joint Genome Institute (JGI) 3300044510 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.7 121.4 822860930 1366406 453 20 738 37 Unrestricted 16.97 Metagenome 3300005230 *Microbiome Permanent Draft Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich - 34I-101 University of Cincinnati 3300005230 Metagenome Analysis Velvet v. 0.7.57 released per JGI data release policy No Yes rlamendella@lbl.gov Regina Lamendella No Environmental Aquatic Groundwater Freshwater Contaminated Groundwater 40.0 -74.5 0 0 0 0 0 0 0.0 Metagenome 3300017991 *Microbiome Permanent Draft Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_2 metaG DOE Joint Genome Institute (JGI) 3300017991 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes valentine@geol.ucsb.edu David Valentine No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Sediment Hypersaline lake sediment 33.4166 -115.9166 2512145095 4952026 1828 27 3057 40 SRX3905682 Unrestricted 7.32 Metagenome 7000000024 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human right retroauricular crease microbial communities from NIH, USA - visit 2 of subject 764083206 replicate 2 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000024 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 11963978 18190 0 0 0 0 SRX024911 0.0 Metagenome 7000000363 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764325968 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000363 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 39633796 74250 0 0 0 0 0.0 Metagenome 3300042175 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Eunicella gazella from Algarve, Portugal - EG16H v2 Molecular Research LP (MR DNA) 3300042175 Metagenome Analysis Metawrap workflow v. 1.0.8 released by JGI data releasing policy Yes Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 61705334 70042 8 2 9 3 0.0 Metagenome 3300070854 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Treehaven, Wisconsin, USA - TREE_014-M-20170707-COMP-DNA1 3300070854 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 24937586 76566 79 14 156 24 0.0 Metagenome 3300026250 *Microbiome Permanent Draft Anaerobic biogas reactor microbial communites from Washington, USA Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_B C12 SIP DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026250 Metagenome Analysis spades v. 3.11.1 Yes Yes dacb@uw.edu David Beck Yes 28895946 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic biogas reactor 47.6525 -122.3049 431155968 743617 327 0 466 1 SRX2339135 Unrestricted 0.0 Metagenome 3300006292 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 809635352 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006292 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 158690867 215361 111 0 118 0 0.0 Metagenome 3300070429 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Mountain Lake Biological Station, Virginia, USA - MLBS_061-M-20180612-COMP-DNA1 3300070429 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 47731042 136644 61 5 129 11 0.0 Metagenome 3300025906 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025906 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.4774 -85.451 2539728087 5913397 902 62 1804 98 SRX2745042 Unrestricted 0.0 Metagenome 3300051377 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - HDCR2D-14 DOE Joint Genome Institute (JGI) 3300051377 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 689495936 1244549 667 66 1104 100 Unrestricted 16.94 Metagenome 3300034391 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 13HMC DOE Joint Genome Institute (JGI) 3300034391 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological hypolithic biocrust 34.7856 -115.66 273881997 722960 507 27 1054 32 SRX7614867 Unrestricted 8.93 Metagenome 2070309007 *Microbiome Permanent Draft Wastewater viral communities from wastewater treatment facility in Singapore EF-deduplicated data University of Illinois, Urbana-Champaign 2070309007 Metagenome Analysis not assmebled released per JGI data release policy No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Wastewater Dissolved organics (anaerobic) Nutrient removal Activated sludge Wastewater 1.332 103.756 90734374 288440 2 0 3 0 0.0 Metagenome 3300009151 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG DOE Joint Genome Institute (JGI) 3300009151 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 46.8319 -72.5 1139626073 2065004 661 150 959 227 SRX2955013 Unrestricted 0.0 Metagenome 3300022446 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1BM1 JM91 AGRF 3300022446 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 68140173 114842 48 0 74 0 0.0 Metagenome 3300023042 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-241 DOE Joint Genome Institute (JGI) 3300023042 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Unclassified Plant litter Unclassified leaf litter 40.2198 -122.9842 117035040 227733 33 38 39 59 SRX4392069 Unrestricted 46.23 Metagenome 3300001147 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O1 DOE Joint Genome Institute (JGI) 3300001147 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 7955563 24266 368 169 602 344 SRX3305883 Unrestricted 0.0 Metagenome 3300005362 *Microbiome Permanent Draft Hoatzin crop microbial communities from Cojedes, Venezuela Hoatzin crop microbial communities from Cojedes, Venezuela, sample from fiber fraction 12 v2 (version 2) DOE Joint Genome Institute (JGI) 3300005362 Metagenome Analysis Newbler and/or Velvet released based on JGI ITS No Yes sgtringe@lbl.gov, maria.dominguez1@upr.edu; fgodoyvitorino@gmail.com Susannah Tringe, Maria Gloria Dominguez-Bello; Filipa Godoy Vitorino No Host-associated Birds Esophagus Digestive system Crop Hoatzin crop 8.956944 -68.299167 635987952 1917860 244 19 640 43 Unrestricted 0.0 Metagenome 3300001861 *Microbiome Permanent Draft Trichloroethene dechlorinating bioreactor microbial communities from Berkeley, California, USA Trichloroethene dechlorinating bioreactor microbial communities from Berkeley, California, USA - LACBS006B 3300001861 Metagenome Analysis released by JGI data releasing policy No Yes benstenuit@gmail.com Benoit stenuit, Ben A. Stenuit No Engineered Bioremediation Chloroethene Tetrachloroethylene and derivatives Bioreactor Trichloroethene dechlorinating bioreactor 37.87 -122.26 31144408 64273 1 0 0 0 0.0 Metagenome 3300059465 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - HDCR3D-14 DOE Joint Genome Institute (JGI) 3300059465 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 620387607 1072405 576 47 1024 76 Unrestricted 0.0 Metagenome 3300011224 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00440 Weill Cornell Medical College 3300011224 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.7 -73.8 36394501 61740 23 0 28 0 SRX822409 0.0 Metagenome 3300002023 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot21A 3300002023 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 32980114 181078 364 8 636 19 0.0 Metagenome 3300018877 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - late stage, 42 hrs after wetting v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018877 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 279749613 565516 303 17 497 31 0.0 Metagenome 3300027876 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027876 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 1239285674 3513745 1267 88 2320 183 SRX2575152 Unrestricted 0.0 Metagenome 3300002364 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 09AUG2011 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002364 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 19272245 45985 53 15 98 35 SRX1989661 Unrestricted 0.0 Metagenome 3300013114 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 198m, 250-2.7um, replicate a Georgia Genomics Facility 3300013114 Metagenome Analysis IDBA 1.1.1 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 294690171 389829 157 66 213 100 0.0 Metagenome 3300049222 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_180822.NP2 DOE Joint Genome Institute (JGI) 3300049222 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 972960367 2008498 508 67 792 122 Unrestricted 15.39 Metagenome 3300070506 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_002-M-20210301-COMP-DNA1 Battelle Memorial Institute 3300070506 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.082813 -119.743324 5.86-6.73 37531 130 7 2 13 2 0.0 Metagenome 3300036796 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in New South Wales, Australia - Pe_10 DOE Joint Genome Institute (JGI) 3300036796 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil -34.5 150.0 1978706973 3318237 529 50 824 77 SRX8385158 Unrestricted 21.18 Metagenome 3300053121 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere DOE Joint Genome Institute (JGI) 3300053121 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121297 -123.269816 689192436 944067 125 116 183 149 Unrestricted 23.9 Metagenome 3300011904 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01461 Weill Cornell Medical College 3300011904 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.64 -73.96 65693447 90290 40 0 60 0 SRX823357 0.0 Metagenome 3300011442 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2 DOE Joint Genome Institute (JGI) 3300011442 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9776 -107.0029 558042092 1194504 401 31 786 52 SRX3539331 Unrestricted 0.0 Metagenome 3300059418 *Microbiome Permanent Draft Sorghum rhizosphere and bulk soil microbial communities from University of Arizona Maricopa Agricultural Center, AZ, USA Soil microbial communities from unplanted plot in University of Arizona Maricopa Agricultural Center, AZ, USA - 2_0-15_MAC_20210810 DOE Joint Genome Institute (JGI) 3300059418 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Agricultural land Soil Unclassified Soil 33.07735 -111.974819 511710111 1235279 609 20 1148 24 Unrestricted 8.1 Metagenome 3300045514 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Cordillera ecozone, Canada - Lake 13-565 Genome Quebec 3300045514 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 61.934997 -132.521865 839747473 1848105 330 163 566 285 0.0 Metagenome 3300004234 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 91_HOW11 DOE Joint Genome Institute (JGI) 3300004234 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 100058322 221571 59 0 110 0 SRX2721163 Unrestricted 0.0 Metagenome 3300055548 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.16C.11 SIP fraction DOE Joint Genome Institute (JGI) 3300055548 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 105341795 223386 80 7 136 10 Unrestricted 9.28 Metagenome 3300049444 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 soil DOE Joint Genome Institute (JGI) 3300049444 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.588226 -123.192776 6.48 683418569 1253856 326 20 626 30 Unrestricted 17.32 Metagenome 3300049902 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume viral communities from Gulf of California, Mexico - CTD-FK190211-14-1990m-0.03 v DOE Joint Genome Institute (JGI) 3300049902 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 27.01313 -111.4046 119149900 279887 30 5 69 9 Restricted 144.59 Metagenome 3300051211 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Congo River, Brazzaville, Congo - CONGO_055 DOE Joint Genome Institute (JGI) 3300051211 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater -4.3092 15.2356 220886020 540713 336 43 601 49 Restricted 0.0 Metagenome 3300070445 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Marvin Klemme Range Research Station, Oklahoma, USA - OAES_001-M-20180529-COMP-DNA1 3300070445 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 11367760 32895 48 6 93 10 0.0 Metagenome 3300020327 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001964 (ERX556115-ERR599070) CEA Genoscope 3300020327 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 14.2016 -116.696 329690409 717141 242 0 405 3 0.0 Metagenome 3300012435 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100269 University of Pennsylvania 3300012435 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 5793648 16468 12 0 17 0 SRX756632 0.0 Metagenome 3300031682 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22 DOE Joint Genome Institute (JGI) 3300031682 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1572496560 3791661 504 5 855 13 SRX5665911 Unrestricted 12.61 Metagenome 3300013241 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100270 University of Pennsylvania 3300013241 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 35446778 74378 17 0 35 0 SRX756631 0.0 Metagenome 3300039786 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_003-M-20170705-COMP-DNA1 Battelle Memorial Institute 3300039786 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 35813156 99004 124 15 233 20 0.0 Metagenome 3300043908 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T12 S DOE Joint Genome Institute (JGI) 3300043908 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.6753 -64.1296 320321864 752573 48 2 65 9 Unrestricted 38.57 Metagenome 3300036845 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in New South Wales, Australia - Pf_1_1 DOE Joint Genome Institute (JGI) 3300036845 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil -33.6 150.0 4734699154 10493460 1403 105 2515 185 SRX8386007 Unrestricted 9.58 Metagenome 3300043335 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-278 Genome Quebec 3300043335 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.319927 -99.545126 1606735323 3662586 672 142 1059 286 0.0 Metagenome 3300012589 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100408 University of Pennsylvania 3300012589 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 18603182 35661 19 4 26 8 SRX756249 0.0 Metagenome 3300009450 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 4m depth; DNA IDBA-UD Marine Biological Laboratory 3300009450 Metagenome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes jhuber@mbl.edu, jhuber@mbl.edu; jhuber@whoi.edu Huber, Huber; Julie Huber No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 7 196457412 413686 178 32 277 70 0.0 Metagenome 3300029492 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001845-95 Beijing Genomics Institute (BGI) 3300029492 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 193858888 262978 163 0 208 0 0.0 Metagenome 3300039945 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_002-M-20170619-COMP-DNA1 Battelle Memorial Institute 3300039945 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 19143779 55200 80 6 134 6 0.0 Metagenome 3300015348 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_31MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015348 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 384641404 602496 13 147 34 288 SRX3922006 Unrestricted 8.33 Metagenome 3300001415 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 415-3 shallow-072012 DOE Joint Genome Institute (JGI) 3300001415 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 9396342 24922 88 42 147 71 SRX1987646 Unrestricted 0.0 Metagenome 3300027665 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027665 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 363956653 967761 522 33 916 71 SRX2574905 Unrestricted 0.0 Metagenome 3300039018 *Microbiome Permanent Draft Eutrophic freshwater lake viral communities from Lough Neagh, United Kingdom Eutrophic freshwater lake viral communities from Lough Neagh, United Kingdom - 4pW Queen's University Belfast 3300039018 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Eutrophic freshwater lake 54.618333 -6.395278 30029023 67491 0 0 0 0 0.0 Metagenome 3300021383 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2016_1, permeate Toyama Prefectural University 3300021383 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Sediment marine 36.96723 137.36471 49584687 142212 27 1 54 2 0.0 Metagenome 3300027957 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N1_10_20 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027957 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380143 -119.2723688 217284304 548611 225 5 439 7 SRX2523177 Unrestricted 0.0 Metagenome 3300039065 *Microbiome Permanent Draft Freshwater lake viral communities from Lake Michigan, near Chicago, USA Freshwater lake viral communities from Lake Michigan, near Chicago, USA- Montrose140610.1V Genewiz Inc., Loyola University 3300039065 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.9668 -87.637 39537741 77384 39 0 50 0 0.0 Metagenome 3300027618 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert microbial communities from Antarctic Dry Valleys - UQ255 (SPAdes) DOE Joint Genome Institute (JGI) 3300027618 Metagenome Analysis spades v. 3.11.1 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert -78.0486 163.8053 347775324 835811 288 0 491 3 SRX2555526 Unrestricted 0.0 Metagenome 3300001468 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Cubitermes ugandensis midgut segment microbial communities from Kakamega Forest, Kenya - Cu122M DOE Joint Genome Institute (JGI) 3300001468 Metagenome Analysis Yes Yes brune@mpi-marburg.mpg.de Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 0.2917 34.856 108362200 365334 1 6 2 6 SRX3315283 Unrestricted 0.0 Metagenome 3300047531 *Microbiome Permanent Draft Floating fern leaf microbial communities from various locations Floating fern leaf microbial communities from Gainesville, Florida, United States - 2021_IRRI DOE Joint Genome Institute (JGI) 3300047531 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dave.armitage@gmail.com David Armitage No Host-associated Plants Phylloplane/Leaf Phyllosphere Endophytes Leaf 29.6436 -82.362 65845944 71476 26 2 35 5 Unrestricted 382.53 Metagenome 3300002580 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Downstream of discharge Sample CS3-5 454 Life Sciences 3300002580 Metagenome Analysis Genomes released to public per request from Dong Li (May 30 2014) No Yes lidong460@gmail.com Dong Li No Environmental Aquatic River Freshwater Sediment Freshwater sediment 21.345947 40.484555 6-8 0 0 0 0 0 0 0.0 Metagenome 3300019459 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011511BT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300019459 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1265857334 2833960 1113 106 2224 160 SRX4070918 Unrestricted 21.92 Metagenome 3300042752 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA- GW-RW T4_22-July-14 NMDC pilot DOE Joint Genome Institute (JGI) 3300042752 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 38571294 97556 162 33 250 48 SRX2838884 0.0 Metagenome 3300019824 *Microbiome Permanent Draft Microbial mat bacterial communities from Rhone River delta, Camargue, France Microbial mat bacterial communities from Rhone River delta, Camargue, France - 3 University of Barcelona 3300019824 Metagenome Analysis velvet released by Mercedes Berlanga No Yes mberlanga@ub.edu Mercedes Berlanga No Environmental Aquatic Unclassified Sediment Unclassified Microbial mats 43.6 4.6 27317365 77305 27 0 79 3 0.0 Metagenome 3300000702 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 77 DOE Joint Genome Institute (JGI) 3300000702 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 10661129 30121 45 1 80 0 SRX4341377 Unrestricted 0.0 Metagenome 3300030388 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_084 - TARA_R100000935 CEA Genoscope 3300030388 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -60.2287 -60.6476 213327665 342847 80 2 110 3 0.0 Metagenome 3300006629 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_12_3 DOE Joint Genome Institute (JGI) 3300006629 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 15421198 42693 134 0 261 2 SRX2924865 Unrestricted 0.0 Metagenome 3300041822 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - A_27_wk_5 DOE Joint Genome Institute (JGI) 3300041822 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.8655 -106.912 98143983 304630 249 21 460 19 SRX14809623 Unrestricted 7.89 Metagenome 3300026160 *Microbiome Permanent Draft Anaerobic reactors microbiome study Activated sludge microbial communities from lab. scaled anaerobic digester in Belvaux, Luxembourg - ACS0-29 University of Luxembourg 3300026160 Metagenome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 49.506216 5.943617 291899212 332906 74 4 217 6 0.0 Metagenome 3300004013 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2 DOE Joint Genome Institute (JGI) 3300004013 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov, sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe, Susannah Tringe; Jinglie Zhou No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.05241603 -121.76907401 936064784 2831958 1033 11 2306 22 SRX7142755 Unrestricted 0.0 Metagenome 3300001609 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF027 DOE Joint Genome Institute (JGI) 3300001609 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 295072 963 14 4 18 7 SRX2014317 Unrestricted 0.0 Metagenome 3300023498 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_30A University of California, Irvine 3300023498 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 131387772 135335 17 0 30 0 0.0 Metagenome 3300035307 *Microbiome Permanent Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-06-1_at_0-1_cm Genome Quebec 3300035307 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89673 -73.73461 441577585 1165449 435 33 1154 50 0.0 Metagenome 3300009534 *Microbiome Permanent Draft Host-associated microbial communities of aphids from plants in several locations around USA Microbial communities of aphids from Triticum aestivum in Marana, AZ, USA - Rhopalopisum padi seqcov University of Texas, Austin 3300009534 Metagenome Analysis CLC Genomics released per JGI data release policy Yes Yes becky.chong@utexas.edu Rebecca Chong No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified wheat 32.436857 -111.228276 253186349 124658 1 1 1 1 0.0 Metagenome 3300026482 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B DOE Joint Genome Institute (JGI) 3300026482 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 199373316 483694 196 18 329 37 SRX4803890 Unrestricted 10.35 Metagenome 3300048510 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - Jacob127 DOE Joint Genome Institute (JGI) 3300048510 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Sand Soil Desert sand -78.0302 164.2506 223683072 476849 184 3 291 3 Unrestricted 23.62 Metagenome 7000000298 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159915365 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000298 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 99628161 163384 0 0 0 0 0.0 Metagenome 3300012567 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100735 University of Pennsylvania 3300012567 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 13733642 27544 16 4 37 2 SRX756115 0.0 Metagenome 3300011600 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01095 Weill Cornell Medical College 3300011600 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.63 -73.94 21195781 39067 13 0 28 0 SRX823050 0.0 Metagenome 3300008744 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 763496533 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008744 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 208172635 293086 224 0 297 0 0.0 Metagenome 3300038391 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - ARW9_20151203 DOE Joint Genome Institute (JGI) 3300038391 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 98085945 154177 61 5 85 7 SRX9140178 Unrestricted 72.1 Metagenome 3300044522 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME20Apr2019-rf0895 DOE Joint Genome Institute (JGI) 3300044522 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 727417206 1126112 314 97 378 139 Unrestricted 22.14 Metagenome 3300007848 *Microbiome Permanent Draft Microbial communities from hot springs in different districts of India Microbial communities from hot springs in Panchmahal district, Gujarat, India - Tuva Anand Agricultural University 3300007848 Metagenome Analysis Velvet released per JGI data release policy No Yes ssunil48@gmail.com Sunil Bhavsar No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 22.5781835 71.6139348 96839613 418343 2246 0 4211 0 0.0 Metagenome 3300038509 *Microbiome Permanent Draft Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China - KO4 v2 Sun Yat-Sen University 3300038509 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy No Yes yuxiaoli92@163.com Xiaoli Yu No Environmental Aquatic Intertidal zone Marine Mangrove sediment mangrove sediment 23.45 116.43 121401423 167063 62 2 102 4 0.0 Metagenome 3300001263 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY83 J. Craig Venter Institute (JCVI) 3300001263 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 1255905782 5009041 225 163 629 328 0.0 Metagenome 3300020011 *Microbiome Permanent Draft Rumen microbial communities from healthy moose, Palmer, Alaska Rumen fluid microbial communities from healthy moose, Palmer, Alaska - F02 Viral contigs Ohio State University 3300020011 Metagenome Analysis IDBA-UD released by Lindsey Solden No Yes wrighton.1@osu.edu; solden.2@osu.edu Kelly Wrighton; Lindsey Solden Yes 30356154 Host-associated Mammals Stomach Digestive system Rumen Moose rumen 61.5997 -148.112 9504541 11874 0 0 2 0 0.0 Metagenome 3300002107 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3-10 DOE Joint Genome Institute (JGI) 3300002107 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 383957 1390 13 0 42 0 SRX1990510 Unrestricted 0.0 Metagenome 3300040157 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Abby Road, Pacific Northwest, WA, USA - ABBY_006-M-20170605-COMP-DNA1 Battelle Memorial Institute 3300040157 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.76243 -122.33033 9123407 27483 56 3 98 10 0.0 Metagenome 3300012064 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Georgia, USA - TSGA057 MetaG DOE Joint Genome Institute (JGI) 3300012064 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 33.0838 -81.771 65640084 118817 29 500 30 800 SRX3539655 Unrestricted 0.0 Metagenome 3300012323 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100475 University of Pennsylvania 3300012323 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 15723556 36356 5 0 11 0 SRX756523 0.0 Metagenome 3300070934 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_004-M-20171109-COMP-DNA1 3300070934 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 59306281 167072 111 8 235 9 0.0 Metagenome 3300009037 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 1-3cm March2015 DOE Joint Genome Institute (JGI) 3300009037 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wilkins.231@osu.edu, mike.wilkins@colostate.edu Michael Wilkins Yes 30086797 Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0991 -99.1044 1217764970 2514588 967 23 1778 32 SRX2753773 Unrestricted 0.0 Metagenome 3300013006 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG DOE Joint Genome Institute (JGI) 3300013006 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 46.008 -89.701 2117896831 4129782 1056 430 1454 683 SRX3566127 Unrestricted 12.51 Metagenome 3300012944 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300012944 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 3114600542 6803583 1641 95 2995 211 SRX3048967, SRX3048968, SRX3048969, SRX3048961, SRX3048962, SRX3048963, SRX3048964, SRX3048965, SRX3048966 Unrestricted 0.0 Metagenome 3300011536 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00476 Weill Cornell Medical College 3300011536 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.81 -73.92 27099215 33850 10 0 9 0 SRX822445 0.0 Metagenome 3300029381 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 075_4_29_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029381 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 296471018 420466 345 0 429 0 0.0 Metagenome 3300006806 *Microbiome Permanent Draft Agricultural soil microbial communities from Utah and Georgia to study Nitrogen management Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 DOE Joint Genome Institute (JGI) 3300006806 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jeanette.norton@usu.edu Jeanette Norton No Environmental Terrestrial Agricultural land Soil Unclassified Agricultural soil 33.8834 -83.4195 2694943176 6329322 2997 239 5178 417 SRX2924180 Unrestricted 0.0 Metagenome 3300001826 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM20, ROCA_DNA104_0.2um_23b 3300001826 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River plume Marine Plankton Marine plankton 10.6822 -54.4213 18295588 43668 13 3 35 5 0.0 Metagenome 3300037479 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from California, United States - Upper Travertine Spring (UTS_S1) DOE Joint Genome Institute (JGI) 3300037479 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Warm (34-42C) Thermal springs Unclassified Desert spring 36.4428 -116.8278 7.4 4390343937 6200625 1433 6 2273 9 SRX9167910 Unrestricted 13.43 Metagenome 3300002756 *Microbiome Permanent Draft Deep subsurface microbial communities from Mt. Terri Underground Rock Laboratory, Switzerland, that are autotrophic Deep subsurface microbial communities from Mt. Terri, Switzerland - Autotrophic microbial communities BRH/23 DOE Joint Genome Institute (JGI) 3300002756 Metagenome Analysis Yes Yes rizlan.bernier-latmani@epfl.ch Rizlan Bernier-Latmani Yes 27739431 Environmental Aquatic Groundwater Deep subsurface Porewater Deep subsurface 47.379 7.1648 251269858 471569 323 1 486 4 SRX957931, SRX957930 Unrestricted 0.0 Metagenome 3300037541 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Sep2017-rr0141 DOE Joint Genome Institute (JGI) 3300037541 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1293160323 1848121 529 125 724 202 SRX9139781 Unrestricted 14.7 Metagenome 3300006963 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Dobu ""bubble"", co3ds" University of New South Wales 3300006963 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Coelocarteria singaporensis (marine sponge) -9.73665 150.867667 9655140 22577 7 2 14 6 0.0 Metagenome 3300040706 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Taiga, AK, USA - HEAL_025-O-20160803-COMP-DNA1 Battelle Memorial Institute 3300040706 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.87569 -149.21334 2521470 8060 13 5 25 2 0.0 Metagenome 3300024454 *Microbiome Permanent Draft Vaginal microbial communities from lab mice Vaginal microbial communities from healthy lab mice, Madrid, Spain - A1, day 1 Polytechnic University of Valencia 3300024454 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Vagina Reproductive system Unclassified mice vagina 40.4191094 -3.6725753 960009 1421 0 0 0 0 0.0 Metagenome 3300038482 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18B_6_18_9 mgh University of Alberta 3300038482 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 46368690 63118 27 1 35 1 0.0 Metagenome 3300023293 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1165 DOE Joint Genome Institute (JGI) 3300023293 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 81894154 179549 24 3 36 5 SRX4397413 Unrestricted 34.93 Metagenome 7000000274 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 737052003 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000274 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 104028754 188371 0 0 0 0 0.0 Metagenome 3300053166 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S40_C_D45 hydrophobic DOE Joint Genome Institute (JGI) 3300053166 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 332435967 517100 158 10 238 8 Restricted 0.0 Metagenome 3300013843 *Microbiome Permanent Draft Ice-worm associated microbial communities from glacial ice of Collier Glacier, North Sister, OR, USA Ice-worm associated microbial communities from glacial ice of Collier Glacier, North Sister, OR, USA - sample 1 University of Cincinnati 3300013843 Metagenome Analysis Megahit v 1.1.1 released by JGI data releasing policy No Yes trinityh@umn.edu Trinity Hamilton No Host-associated Annelida Unclassified Unclassified Unclassified Glacial ice worm 44.17096 -121.788323 540704598 449822 20 21 33 15 0.0 Metagenome 3300069512 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dead Lake, Ozarks Complex, AL, USA - DELA_014-M-20160824-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069512 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 32.54172 -87.80389 25973314 82730 83 7 144 14 0.0 Metagenome 3300025076 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - 3C3 metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025076 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; wswingley@niu.edu Ramunas Stepanauskas; Wesley Swingley No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 41.6655 -87.5437 13-14 50898861 89456 41 3 75 6 SRX3008002 Unrestricted 0.0 Metagenome 3300026509 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026509 Metagenome Analysis spades v. 3.11.1 Yes Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 387419405 699983 236 1 282 5 SRX2740068 Unrestricted 0.0 Metagenome 3300006043 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Synthetic microbial communities from Ohio, USA - SynthPrep_16_END_DS12_MetaG DOE Joint Genome Institute (JGI) 3300006043 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes reginalamendella@gmail.com Regina Lamendella No Engineered Bioreactor Activated sludge Aerobic Unclassified Synthetic lake water 40.0 -83.0145 100158990 198653 266 0 424 1 SRX2839601, SRX2839600 Unrestricted 0.0 Metagenome 7000000493 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 763982056 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000493 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 1833405 2565 0 0 0 0 SRX024186 0.0 Metagenome 3300049308 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA18 DOE Joint Genome Institute (JGI) 3300049308 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 498471118 1244079 459 11 886 10 Unrestricted 7.55 Metagenome 3300046835 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 soil DOE Joint Genome Institute (JGI) 3300046835 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.587947 -123.193941 6.59 310272247 582117 223 20 443 24 Unrestricted 19.74 Metagenome 2081372005 *Microbiome Permanent Draft Rangifer tarandus platyrhynchus rumen microbial communities from Svalbard, Norway Rangifer tarandus platyrhynchus rumen microbial communities from Svalbard, Norway - Sample 549 Macrogen 2081372005 Metagenome Analysis Newbler No Yes phillip.b.pope@gmail.com Phillip Pope, Phil B. Pope Yes 22701672 Host-associated Mammals Stomach Digestive system Rumen Rangifer tarandus platyrhynchus rumen 78.2166667 15.6333333 26328181 53089 0 0 0 0 0.0 Metagenome 3300005915 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKB DOE Joint Genome Institute (JGI) 3300005915 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli, Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline Lake -68.4725 78.188 702459535 1754794 707 0 1240 4 SRX2839724 Unrestricted 0.0 Metagenome 3300000229 *Microbiome Draft Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- LI09_3 DOE Joint Genome Institute (JGI) 3300000229 Metagenome Analysis released based on JGI ITS Yes Yes jlm80@psu.edu Jennifer Macalady No Environmental Aquatic Groundwater Freshwater Cave water Groundwater 43.383333 12.95 281841843 721213 309 2 571 0 Unrestricted 0.0 Metagenome 3300008668 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 1, subject 159591683 replicate 2 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008668 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 23011915 27855 14 2 12 6 SRX024607, SRX024608, SRX024702, SRX024703 0.0 Metagenome 3300025282 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025282 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 38.38 4.65 355853383 776038 58 5 63 4 SRX2753806 Unrestricted 0.0 Metagenome 3300020563 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 09JUN2009 deep hole epilimnion ns (SPAdes) DOE Joint Genome Institute (JGI) 3300020563 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 171865491 361975 143 24 232 33 SRX1987766 Unrestricted 0.0 Metagenome 3300022819 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R12 Version 2 University of New South Wales 3300022819 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 121261158 200293 80 3 121 9 0.0 Metagenome 3300031515 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_Pe2 DOE Joint Genome Institute (JGI) 3300031515 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 299871321 610812 203 0 302 1 SRX5650851 Unrestricted 169.98 Metagenome 3300008615 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 675950834 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008615 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 101487259 201891 87 0 137 1 0.0 Metagenome 3300048586 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Sediment microbial communities from brackish wetlands in San Jose, California, USA - ROC1_2 DOE Joint Genome Institute (JGI) 3300048586 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Intertidal zone Marine Salt marsh sediment Sediment 37.427598 -121.938678 1736039622 2554910 498 85 614 121 Unrestricted 30.12 Metagenome 3300028796 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141 DOE Joint Genome Institute (JGI) 3300028796 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92028116 -106.94891893 809514034 1968822 388 16 706 19 SRX5354685 Unrestricted 12.37 Metagenome 3300065600 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 798 in Beiseker, Alberta, Canada - S00JY_0241 Microbiome Insights 3300065600 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.24546833 -113.3320866 214022729 301063 105 3 145 4 0.0 Metagenome 3300031568 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050630_ee2 DOE Joint Genome Institute (JGI) 3300031568 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 313847798 672133 224 0 304 0 SRX5650798 Unrestricted 223.12 Metagenome 3300010220 *Microbiome Permanent Draft Freshwater microbial communities enriched with nitrile substrates Freshwater aquifer microbial community from Bangor, North Wales, UK, before enrichment, replicate 4 Fidelity Systems Inc 3300010220 Metagenome Analysis Phred/Phrap/Consed v. 23.0 released per JGI data release policy Yes Yes stepan.toshchakov@gmail.com Stepan Toshchakov No Environmental Aquatic Groundwater Deep subsurface Unclassified freshwater 53.23 -4.13 106389678 180894 68 0 80 0 0.0 Metagenome 3300000909 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 37 DOE Joint Genome Institute (JGI) 3300000909 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 26999708 78133 61 0 98 1 SRX1984844 Unrestricted 0.0 Metagenome 3300014101 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Thailand to Iowa, USA - T4 Iowa State University 3300014101 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 3808527 7352 0 3 0 2 SRX1150301 0.0 Metagenome 3300042959 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-400 Genome Quebec 3300042959 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 52.320231 -109.950294 981872534 2366351 242 44 383 85 0.0 Metagenome 3300005968 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius loisae LIZARD ISLAND.2 DOE Joint Genome Institute (JGI) 3300005968 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 542005512 1212508 3 10 9 7 SRX2712186 Unrestricted 0.0 Metagenome 3300053773 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT_PTT1_JUN19_90cm DOE Joint Genome Institute (JGI) 3300053773 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9883 -108.4003 11510138 34789 58 2 138 1 Restricted 0.0 Metagenome 3300032162 *Microbiome Permanent Draft Rock endolithic microbial communities from Victoria Land, Antarctica Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord DOE Joint Genome Institute (JGI) 3300032162 Metagenome Analysis spades v. 3.13.0 Yes Yes selbmann@unitus.it Laura Selbmann Yes 32139564 Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock -75.8 159.9 954171931 1409749 183 38 233 43 SRX5225132 Unrestricted 34.18 Metagenome 3300060400 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210618_22_05 DOE Joint Genome Institute (JGI) 3300060400 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 473994077 680238 266 119 330 170 Unrestricted 39.44 Metagenome 3300048058 *Microbiome Permanent Draft Marine and freshwater sediment microbial communities from various locations Marine sediment microbial communities from Mediterranean Sea - Mediterranean_Core_1_0-4_cm DOE Joint Genome Institute (JGI) 3300048058 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes smtechtm@mtu.edu Stephen Techtmann No Environmental Aquatic Sediment Marine Unclassified Marine sediment 31.971 30.142 399661359 1240358 422 0 812 1 Unrestricted 6.8 Metagenome 3300034815 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B3A4.1 DOE Joint Genome Institute (JGI) 3300034815 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 441009238 1167908 599 1 1041 1 SRX7658937 Unrestricted 7.22 Metagenome 3300009906 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S13 University of New South Wales 3300009906 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes z5119396@unsw.edu.au; h.luter@aims.gov.au Hung Nguyen; Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Microbial -18.833 147.683 8.1 38977256 70859 17 8 16 20 0.0 Metagenome 3300013937 *Microbiome Permanent Draft Host-associated microbial communities from Red Sea sponge Carteriospongia foliascens Sponge Carteriospongia foliascens associated microbial communities from Red Sea - SH4 The Hong Kong University of Science and Technology 3300013937 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Porifera Unclassified Unclassified Unclassified Sponge Carteriospongia foliascens 163264049 191830 2 10 9 13 SRX437668 0.0 Metagenome 3300070630 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_072-M-20200715-COMP-DNA1 3300070630 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 30949289 93058 67 5 114 4 0.0 Metagenome 3300025151 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025151 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 18.92 -104.89 497389702 1235013 0 0 0 0 SRX2557419 Unrestricted 0.0 Metagenome 3300035164 *Microbiome Permanent Draft Seawater and sediment microbial communities from various locations Seawater microbial communities from eastern tropical North Pacific Ocean - AMALJGI-DNA-5 DOE Joint Genome Institute (JGI) 3300035164 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bbw@princeton.edu Bess Ward No Environmental Aquatic Oceanic Marine Unclassified seawater 17.206 -110.7114 619511873 1498719 464 329 795 605 SRX8377308 Unrestricted 11.55 Metagenome 3300042685 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A58 University of California, Davis 3300042685 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 311385195 840954 365 5 637 8 0.0 Metagenome 3300002516 *Microbiome Permanent Draft Orange tunicate microbial communities from Islas Murcielagos, Costa Rica Host associated Microbial communities of an Orange Tunicate from Islas Murcielagos, Costa Rica -Sample 27904 3300002516 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes drikaul@umich.edu Drishti Kaul No Host-associated Tunicates Unclassified Ascidians Unclassified Orange tunicate 10.854298 -85.931692 528030477 934705 9 7 19 7 0.0 Metagenome 3300045017 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_200m_2014 DOE Joint Genome Institute (JGI) 3300045017 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 1096438783 2034820 876 5 1480 9 Unrestricted 11.56 Metagenome 3300014313 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLC_D1 DOE Joint Genome Institute (JGI) 3300014313 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.224518 -122.019257 325623163 782749 400 10 783 12 SRX7188134 Unrestricted 0.0 Metagenome 3300060295 *Microbiome Permanent Draft Soil microbial communities from experimental field in IAREC, Washington State University, Posser, WA, USA Lab enriched soil microbial communities from experimental field in IAREC, Washington State University, Posser, WA, USA - SM_0534_SR DOE Joint Genome Institute (JGI) 3300060295 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Agricultural land Soil Unclassified Soil 46.25 -119.73 201026605 242849 36 2 37 3 Unrestricted 455.67 Metagenome 3300000735 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 29JUN2009 epilimnion DOE Joint Genome Institute (JGI) 3300000735 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300012640 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100558 University of Pennsylvania 3300012640 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 30803194 56584 52 0 80 1 SRX756196 0.0 Metagenome 3300029230 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002668-39 Beijing Genomics Institute (BGI) 3300029230 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 144797091 197436 111 1 170 2 0.0 Metagenome 3300050140 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim3 80-84 DOE Joint Genome Institute (JGI) 3300050140 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.352963 19.04747 202838364 318623 105 2 165 7 Restricted 32.84 Metagenome 3300008409 *Microbiome Permanent Draft Coastal sediment microbial communities from intertidal sand flat, Janssand, Germany Coastal sediment microbial communities from intertidal sand flat, Janssand, Germany_1868_binC Max Planck Institute for Plant Breeding Research 3300008409 Metagenome Analysis SPades released per JGI data release policy No Yes mmussman@gmail.com Marc Mussmann No Environmental Aquatic Coastal Marine Sediment sediment 53.736 7.6989 22339067 22613 5 0 5 0 0.0 Metagenome 3300006131 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t1_692P_control - viral_metagenome University of Texas Southwestern Medical Center 3300006131 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 110216963 214944 108 0 144 0 0.0 Metagenome 3300043423 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Red Butte Creek, Salt Lake City, Utah, USA - redbuttecreek_2019_sw_WHONDRS-S19S_0086 DOE Joint Genome Institute (JGI) 3300043423 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 40.7801 -111.8054 341848360 544757 363 134 555 195 Unrestricted 22.46 Metagenome 3300054061 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40 re-annotation DOE Joint Genome Institute (JGI) 3300054061 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 670443254 1269795 286 9 499 14 SRX3959982 0.0 Metagenome 3300025284 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025284 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.9082 -79.0499 234172457 369031 150 0 181 0 SRX2562216 Unrestricted 0.0 Metagenome 3300029871 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37545 Beijing Genomics Institute (BGI) 3300029871 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 209867885 263836 151 1 227 1 0.0 Metagenome 7000000086 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159227541 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000086 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 82727309 157554 0 0 0 0 0.0 Metagenome 3300002915 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm DOE Joint Genome Institute (JGI) 3300002915 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.73825 -123.6301 165939417 439950 436 22 708 47 SRX2562219 Unrestricted 0.0 Metagenome 3300034777 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Seawater microbial communities from Algarve, Portugal - SW03 Molecular Research LP (MR DNA) 3300034777 Metagenome Analysis Metawrap workflow v. 1.0.9 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Environmental Aquatic Oceanic Marine Unclassified seawater 36.979778 -7.989111 33957420 48116 10 4 15 3 0.0 Metagenome 2199352027 *Microbiome Draft Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA - Biofuel metagenome 3 version 2 (version 3) DOE Joint Genome Institute (JGI) 2199352027 Metagenome Analysis released based on JGI ITS No Yes hrbeller@lbl.gov Harry Beller Yes 29556105 Engineered Bioreactor Unclassified Anaerobic Unclassified Bioreactor 37.8754404 -122.2477251 110983244 228289 131 0 205 0 Unrestricted 0.0 Metagenome 3300048659 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - Jacob476 DOE Joint Genome Institute (JGI) 3300048659 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Sand Soil Desert sand -78.0803 164.3877 382642783 761181 196 1 311 0 Unrestricted 0.0 Metagenome 3300009505 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523 DOE Joint Genome Institute (JGI) 3300009505 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 1146455692 2297832 833 126 1379 230 SRX2999752 Unrestricted 0.0 Metagenome 3300002048 *Microbiome Permanent Draft Soil microbial communities from Amlakhadi River, Gujarat, India Soil microbial communities from Amlakhadi River, Gujarat, India - Sample 2 3300002048 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Aquatic River Freshwater Sediment Soil 21.636337 72.989458 0 0 0 0 0 0 0.0 Metagenome 3300025819 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial mat communities from California, USA to study Microbial Dark Matter (Phase II) - Cone Pool mat layer C metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025819 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; jspear@mines.edu; jkjarett@lbl.gov Ramunas Stepanauskas; John Spear; Jessica Jarett No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 407200295 706374 322 3 470 4 SRX2526462 Unrestricted 0.0 Metagenome 3300055523 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.2W.10 SIP fraction DOE Joint Genome Institute (JGI) 3300055523 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 228246074 391550 225 38 384 58 Unrestricted 20.53 Metagenome 3300033757 *Microbiome Permanent Draft Metagenomes from anaerobic digester of solid waste Leachate microbial community from anaerobic digester in University of Toronto, Ontario, Canada - S62W2 SP Beijing Genomics Institute (BGI) 3300033757 Metagenome Analysis spades v. 3.12.0 Yes Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic digester leachate 43.6629 -79.3957 738469035 1593303 493 15 1050 22 0.0 Metagenome 3300000449 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 DOE Joint Genome Institute (JGI) 3300000449 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 884169 2768 71 9 110 11 SRX1985852, SRX2021670, SRX1985853 0.0 Metagenome 3300040485 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lajas Experimental Station, Atlantic Neotropical, PR, USA - LAJA_046-M-20160920-COMP-DNA1 Battelle Memorial Institute 3300040485 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 18.02125 -67.0769 3866561 12104 21 1 36 3 0.0 Metagenome 3300000571 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m DOE Joint Genome Institute (JGI) 3300000571 Metagenome Analysis Yes Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.292222 -73.604444 618992944 1391570 1009 21 1744 45 SRX3307852, SRX3307853 Unrestricted 0.0 Metagenome 3300045959 *Microbiome Permanent Draft Sediment microbial communities from various rivers and their estuaries in the United States Sediment microbial communities from Muddy Creek estuary, Maryland, United States - BTRS19_Sengupta_2S DOE Joint Genome Institute (JGI) 3300045959 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sg.aditi@gmail.com Aditi Sengupta No Environmental Aquatic Intertidal zone Marine Estuary sediment 38.8749 -76.5464 1303254069 2245788 736 29 1316 38 Unrestricted 15.78 Metagenome 3300046341 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_115 DOE Joint Genome Institute (JGI) 3300046341 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9223 -106.9493 19804092 68674 222 4 405 9 Restricted 0.0 Metagenome 3300035162 *Microbiome Permanent Draft Extreme environments viral communities from various locations Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB_02 2018 DOE Joint Genome Institute (JGI) 3300035162 Metagenome Analysis spades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Coastal Marine Unclassified sea-ice brine 71.473 -156.7294 1532277574 3184683 618 263 794 399 SRX7519965, SRX7519964 Unrestricted 0.0 Metagenome 7000000319 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 809635352 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000319 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2995904 2961 0 0 0 0 0.0 Metagenome 3300027310 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgHMB (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027310 Metagenome Analysis spades v. 3.11.1 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Agricultural land Soil Unclassified Soil 45.54 -73.72 159146940 459546 262 17 474 25 SRX2521298 Unrestricted 0.0 Metagenome 3300043243 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from California, United States - Mound Spring (MOS_S4) (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043243 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Warm (34-42C) Thermal springs Unclassified Desert spring 37.0233 -117.3845 6.89 445193116 649878 191 5 347 11 SRX9167300 Unrestricted 77.56 Metagenome 3300005649 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius sp. DAHAB.2 DOE Joint Genome Institute (JGI) 3300005649 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 724939377 1625988 10 30 19 29 SRX2711811 Unrestricted 0.0 Metagenome 3300008069 *Microbiome Permanent Draft Wastewater microbial communities from the hospital sewers Wastewater microbial communities from the hospital sewers in Singapore - Hospital 3 Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300008069 Metagenome Analysis CLC genomics workbench 8 released per JGI data release policy No Yes erinscm@nus.edu.sg Charmaine Ng No Engineered Wastewater Unclassified Unclassified Unclassified wastewater 1.3 103.8 201498125 447152 156 3 283 2 0.0 Metagenome 3300061589 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_SEK2_5_to_RHK2 DOE Joint Genome Institute (JGI) 3300061589 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.153 -124.211 785984052 1252968 348 131 599 181 Unrestricted 0.0 Metagenome 3300005516 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF49B DOE Joint Genome Institute (JGI) 3300005516 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 527671420 1508255 329 244 510 421 SRX2781817 Unrestricted 0.0 Metagenome 3300045685 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_2_E DOE Joint Genome Institute (JGI) 3300045685 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 162323182 187913 96 1 117 1 Unrestricted 87.6 Metagenome 3300044236 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T104 S DOE Joint Genome Institute (JGI) 3300044236 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.8069 -64.3788 245387675 610451 13 0 26 2 Unrestricted 53.05 Metagenome 3300032164 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0 DOE Joint Genome Institute (JGI) 3300032164 Metagenome Analysis spades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.508 -110.3268 4355370940 9390125 1994 28 3359 50 SRX6380914 Unrestricted 10.96 Metagenome 3300009446 *Microbiome Permanent Draft Genome and metagenome analysis of marine red algae Porphyra Marine algal microbial communities from Maine, USA - Maine_Asex2 metaG DOE Joint Genome Institute (JGI) 3300009446 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes brawley@maine.edu, Brawley@maine.edu Susan Brawley No Host-associated Algae Unclassified Red algae Unclassified Marine 44.342 -68.065 781450454 1318579 734 17 1738 32 SRX2954907 Unrestricted 0.0 Metagenome 7000000558 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human attached/keratinized gingiva microbial communities from NIH, USA - visit 2, subject 763496533 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000558 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Attached/Keratinized gingiva Human 39.0042816 -77.1012173 47415560 62841 0 0 0 0 0.0 Metagenome 3300008949 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from Cariaco Basin, Caribbean Sea - 30_WHOI_OMZ DOE Joint Genome Institute (JGI) 3300008949 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 10.847 -65.114 52714951 104575 65 2 109 4 SRX2929478 Unrestricted 0.0 Metagenome 3300018060 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG DOE Joint Genome Institute (JGI) 3300018060 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 3.8381 -73.3194 2091872993 4820640 1320 33 2465 33 SRX3936780 Unrestricted 4.82 Metagenome 3300042366 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME31Aug2005-rr0815 DOE Joint Genome Institute (JGI) 3300042366 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 641476537 1051425 310 22 460 19 Unrestricted 15.78 Metagenome 3300069321 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_009-M-20130731-COMP-DNA1 re-annotation Argonne National Laboratory 3300069321 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 24811241 77569 43 9 79 12 0.0 Metagenome 3300037781 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - ARW9_20151102 DOE Joint Genome Institute (JGI) 3300037781 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 340313746 560488 148 10 221 23 SRX9140177 Unrestricted 36.93 Metagenome 3300048985 *Microbiome Permanent Draft Forest soil microbial communities from boreal-temperate forests in Minnesota, USA Forest soil microbial communities from Hubachek Wilderness Research Center, Ely, Minnesota, USA - Ely AMB WO K1 DOE Joint Genome Institute (JGI) 3300048985 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pankaj.trivedi@colostate.edu Pankaj Trivedi No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 47.55 -92.3 279746371 488699 148 11 250 18 Unrestricted 0.0 Metagenome 3300055080 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_84-s20 day 182 DOE Joint Genome Institute (JGI) 3300055080 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1253273138 1817622 169 154 243 160 Unrestricted 43.0 Metagenome 3300005107 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage D2F08 DOE Joint Genome Institute (JGI) 3300005107 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 44587720 65871 73 0 99 0 SRX2740055 Unrestricted 0.0 Metagenome 3300001700 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A1-12 DOE Joint Genome Institute (JGI) 3300001700 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 555708 2001 17 1 46 0 SRX1990530 Unrestricted 0.0 Metagenome 3300070932 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_003-M-20180925-COMP-DNA1 3300070932 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 131433404 365979 181 5 341 8 0.0 Metagenome 3300015064 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G7B, Adjacent to main proglacial river, mid transect (Watson river)) University of Bristol 3300015064 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.08225 -50.322435 58507862 116438 66 4 125 4 0.0 Metagenome 3300015323 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_31MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015323 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 178659910 323555 8 22 19 23 SRX3922919 Unrestricted 10.34 Metagenome 3300060644 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Caribou Creek Watershed, Alaska, USA - BONA_009-O-20210707-comp-1 DOE Joint Genome Institute (JGI) 3300060644 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Terrestrial soil 65.169192 -147.520277 1973796526 3208194 428 193 716 247 Unrestricted 15.24 Metagenome 3300013466 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100688 University of Pennsylvania 3300013466 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14891134 38756 18 0 20 0 SRX756406 0.0 Metagenome 3300012062 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC076 MetaG DOE Joint Genome Institute (JGI) 3300012062 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 34.406 -78.9844 57504790 89656 20 69 19 115 SRX3539718 Unrestricted 0.0 Metagenome 3300007266 *Microbiome Permanent Draft Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia - TJ16 time point Australian Centre for Ecogenomics 3300007266 Metagenome Analysis CLC released per JGI data release policy No Yes crinke@lbl.gov Christian Rinke No Environmental Aquatic Unclassified Marine Unclassified marine surface water -34.1192 151.2267 89596380 119017 38 5 42 5 0.0 Metagenome 3300029478 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001912-102 Beijing Genomics Institute (BGI) 3300029478 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 133298614 179204 145 0 214 0 0.0 Metagenome 3300033517 *Microbiome Permanent Draft Sinkhole microbial mat communities from Lake Huron, Michigan, USA Sinkhole microbial mat communities from Lake Huron, Michigan, USA - SG0099 University of Michigan 3300033517 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy Yes Yes sgrim01@gmail.com Sharon Grim No Environmental Aquatic Sinkhole Freshwater Unclassified microbial mat 45.19843 -83.32721 250946154 322598 60 28 70 26 0.0 Metagenome 3300021271 *Microbiome Permanent Draft Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States - Hamp_Cave_3 DOE Joint Genome Institute (JGI) 3300021271 Metagenome Analysis spades v. 3.11.1-check Yes Yes zachary.freedman@mail.wvu.edu Zachary Freedman No Environmental Terrestrial Surface mine Soil Reclaimed soil 39.458 -79.073 18074534 57015 98 6 181 11 SRX4029907 Unrestricted 7.1 Metagenome 3300011709 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00922 Weill Cornell Medical College 3300011709 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.88 31999797 49736 14 0 19 0 SRX822885 0.0 Metagenome 3300012942 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Miracle-Growth compost microbial communities from Emeryville, California, USA - Original compost - Miracle growth compost (MG) DOE Joint Genome Institute (JGI) 3300012942 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes JMGladden@lbl.gov John Gladden No Engineered Solid waste Composting Mixed feedstock Commercial compost compost 37.83 -122.29 2092233109 3945669 1723 314 2637 476 SRX3901650 Unrestricted 0.0 Metagenome 3300038484 *Microbiome Permanent Draft Microbial communities from Yellowstone National Park hot springs 2018 Hot spring sediment microbial communities from Stumped Spring OF1, Yellowstone National Park, USA - 180603S University of Minnesota Genomics Center 3300038484 Metagenome Analysis SPAdes v. 3.11.0 released by JGI data releasing policy Yes Yes trinityh@umn.edu Trinity Hamilton No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.53251695 -110.79766796 142901704 282903 76 2 149 0 0.0 Metagenome 3300024452 *Microbiome Permanent Draft Vaginal microbial communities from lab mice Vaginal microbial communities from healthy lab mice, Madrid, Spain - A1, day 20 Polytechnic University of Valencia 3300024452 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Vagina Reproductive system Unclassified mice vagina 40.4191094 -3.6725753 1283535 1904 0 0 0 1 0.0 Metagenome 3300048895 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Soil microbial communities from greenhouse in W.K. Kellogg Biological Station, Michigan, USA - KLW soil_8s unlabeled DOE Joint Genome Institute (JGI) 3300048895 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Environmental Terrestrial Unclassified Soil Unclassified Soil 42.40581 -85.40228 1824608838 2981976 657 38 1046 64 Unrestricted 13.24 Metagenome 3300005756 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS866 Marine Biological Laboratory 3300005756 Metagenome Analysis Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow hydrothermal vent diffuse flow 18.37 -81.798 10354860 15485 3 0 4 0 0.0 Metagenome 3300040539 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_003-O-20170718-COMP-DNA1 Battelle Memorial Institute 3300040539 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 2845690 8813 42 22 68 34 0.0 Metagenome 3300014499 *Microbiome Permanent Draft Permafrost microbial communities from Stordalen Mire, Sweden Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG DOE Joint Genome Institute (JGI) 3300014499 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rich.270@osu.edu Virginia Rich Yes 30013118 Environmental Terrestrial Wetlands Soil Permafrost Bog 68.35 19.05 1807591792 3407719 962 91 1599 178 SRX3580369 Unrestricted 6.6 Metagenome 3300034001 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 15HMC DOE Joint Genome Institute (JGI) 3300034001 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological hypolithic biocrust 34.7856 -115.66 193193024 392473 311 15 549 30 SRX7615724 Unrestricted 8.61 Metagenome 3300028280 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 58D DOE Joint Genome Institute (JGI) 3300028280 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 337065064 791078 278 50 364 86 SRX5172033 Unrestricted 17.0 Metagenome 3300000188 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 60 08/10/11 150m DOE Joint Genome Institute (JGI) 3300000188 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 97531493 206817 59 2 108 5 Unrestricted 0.0 Metagenome 3300004205 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 21_HOW5 DOE Joint Genome Institute (JGI) 3300004205 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 124011253 329392 68 6 131 7 SRX2720161 Unrestricted 0.0 Metagenome 3300022076 *Microbiome Permanent Draft Deep subsurface rock core microbial communities from Deccan traps, Ukhalu, Maharashtra, India Deep subsurface rock core microbial communities from Deccan traps, Ukhalu, Maharashtra, India - U6_55 trimmed_55 Marine Biological Laboratory 3300022076 Metagenome Analysis Spades 3.11.1 released by JGI data releasing policy No Yes avishekdutta14@gmail.com; psar@hijli.iitkgp.ernet.in Avishek Dutta; Pinaki Sar No Environmental Terrestrial Rock Deep subsurface Unclassified Deep subsurface rock core 17.125867 73.869133 885231688 2145285 244 32 535 75 0.0 Metagenome 7000000718 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 159207311 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000718 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 98906 120 0 0 0 0 SRX023065, SRX023064, SRX024698, SRX024699 0.0 Metagenome 3300011935 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01612 Weill Cornell Medical College 3300011935 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.83 -73.92 143747203 175113 25 25 66 28 SRX823427 0.0 Metagenome 7000000272 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 764649650 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000272 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 82320272 126559 0 0 0 0 0.0 Metagenome 3300026736 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day59 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026736 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 39.849 -81.036 20360566 50470 37 4 70 13 SRX2996523 Unrestricted 0.0 Metagenome 3300026971 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and P2 (5) (SPAdes) DOE Joint Genome Institute (JGI) 3300026971 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 105715280 153287 56 0 79 0 SRX3311629 Unrestricted 0.0 Metagenome 3300069514 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_014-M-20160802-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069514 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 15652588 56060 67 0 120 0 0.0 Metagenome 2209111016 *Microbiome Finished Microbial communities from bioreactor at West Virginia State University,USA and at Bielefeld, Germany Thermophilic bioreactor microbial communities at WVSU, USA West Virginia State University 2209111016 Metagenome Analysis Newbler released per JGI data release policy No Yes dsharma@wvstateu.edu Deepak Sharma No Engineered Solid waste Composting Grass Bioreactor Solid waste from Bioreactor 39.0042816 -77.1012173 7.89 503985995 1543745 2049 0 4045 0 0.0 Metagenome 3300012348 *Microbiome Permanent Draft Freshwater microbial communities from rivers and streams along an organic matter gradient associated with agriculture in Ontario, Canada Freshwater microbial communities from Coldwater Creek, Ontario, Canada - S44 Molecular Research LP (MR DNA) 3300012348 Metagenome Analysis metaSPAdes released by JGI data releasing policy No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lotic Freshwater Unclassified Freshwater 44.58751 -79.6655 8.32 294770638 1094530 96 16 205 25 0.0 Metagenome 3300052879 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T4 D (v2) (version 2) DOE Joint Genome Institute (JGI) 3300052879 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.6935 -64.1498 787476914 1902023 26 4 43 4 Restricted 0.0 Metagenome 3300003538 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_Marker33_DNA 3300003538 Metagenome Analysis CLC genomics workbench 7.0 released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com; randerson@carleton.edu; elks@mit.edu Caroline Fortunato, Caroline Fortunato; Rika Anderson; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 210579501 481647 185 18 348 31 0.0 Metagenome 3300029494 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 097_5_2_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029494 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 256433179 328733 258 0 337 0 0.0 Metagenome 3300001008 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1118 DOE Joint Genome Institute (JGI) 3300001008 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 39370 128 13 0 17 2 SRX3311888 Unrestricted 0.0 Metagenome 3300061640 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_003-M-20210727-comp-1 DOE Joint Genome Institute (JGI) 3300061640 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 40.051247 -105.565041 1882639554 3188486 511 19 906 39 Unrestricted 18.01 Metagenome 3300005580 *Microbiome Permanent Draft Freshwater lentic microbial communities from the great Laurentian Lakes, MI, USA for biogeochemical studies Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF DOE Joint Genome Institute (JGI) 3300005580 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified Freshwater lentic 44.504638 -83.045851 683853879 1796254 524 67 798 110 SRX2577344 Unrestricted 0.0 Metagenome 3300041459 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG AgResearch, New Zealand, Mosgeil 3300041459 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Rhizoplane Roots Dairy farm pasture -43.648506 172.343549 930184671 2122173 246 32 755 112 0.0 Metagenome 3300041824 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - A_33_wk_5 DOE Joint Genome Institute (JGI) 3300041824 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9753 -106.978 63257446 210232 196 10 358 13 SRX14809621 Unrestricted 6.63 Metagenome 3300053730 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere DOE Joint Genome Institute (JGI) 3300053730 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.58745 -123.193254 439517031 908847 272 30 440 64 Unrestricted 14.5 Metagenome 3300060387 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210608_12_17 DOE Joint Genome Institute (JGI) 3300060387 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 618612616 941928 280 192 343 257 Unrestricted 24.59 Metagenome 3300050156 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D10_RHK1_5_to_SEK1 DOE Joint Genome Institute (JGI) 3300050156 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.244 565520438 868896 277 113 497 167 Unrestricted 18.87 Metagenome 3300070338 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_024-M-20200810-COMP-DNA1 3300070338 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 23436375 71167 42 0 96 3 0.0 Metagenome 3300012656 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100466 University of Pennsylvania 3300012656 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 34887376 73414 24 0 29 0 SRX756532 0.0 Metagenome 3300027386 *Microbiome Permanent Draft Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran, Adriatic Sea Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge pinacoderm, lysed by freeze-thaw cycling (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027386 Metagenome Analysis spades v. 3.11.1 Yes Yes ute.hentschel@uni-wuerzburg.de Ute Hentschel No Host-associated Porifera Unclassified Sponge Unclassified Host-associated 45.5099 13.56 359189761 539453 176 8 236 8 SRX4919621 Unrestricted 0.0 Metagenome 3300031980 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M3 DOE Joint Genome Institute (JGI) 3300031980 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5341 -110.798 267257994 617247 149 0 228 0 SRX6411431 Unrestricted 206.42 Metagenome 3300030471 *Microbiome Permanent Draft Human fecal microbial communities from healthy and liver cirrhosis patients in Hangzhou, China Human fecal microbial communities from healthy subjects in Hangzhou, China - HD-43_Run3 Zhejiang University 3300030471 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 30.0 120.0 51578946 85393 57 0 108 0 0.0 Metagenome 3300042754 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_25-Nov-14 NMDC pilot DOE Joint Genome Institute (JGI) 3300042754 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 229798527 630970 636 76 1343 130 SRX2838886 0.0 Metagenome 3300069366 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Woodworth, Northern Plains, ND, USA - WOOD_044-O-20170711-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069366 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12823 -99.24136 19878288 60300 98 11 208 12 0.0 Metagenome 3300019822 *Microbiome Permanent Draft Wastewater bacterial communities from palm oil mill effluent (POME) in Pahang, Malaysia - pool1 Wastewater bacterial communities from palm oil mill effluent (POME) in Pahang, Malaysia - pool1 Draft 2 Malaysian Genomics Resource Centre Berhad 3300019822 Metagenome Analysis Velvet released by JGI data releasing policy No Yes adibah.parman@live.iium.edu.my Adibah Parman No Engineered Wastewater Unclassified Activated Sludge Unclassified wastewater 3.488621 102.015994 13144608 17198 3 0 0 0 0.0 Metagenome 3300042321 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME06Aug2014-rr0714 DOE Joint Genome Institute (JGI) 3300042321 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 938080681 1500784 415 76 591 111 Unrestricted 15.71 Metagenome 3300003145 *Microbiome Permanent Draft Marine sediment microbial communities from deep subseafloor Marine sediment microbial communities from deep subseafloor - Sample from 0.8 mbsf Japan Agency for Marine-Earth Science and Technology 3300003145 Metagenome Analysis Made public because these are downloaded from Genbank No Yes takamih@jamstec.go.jp Hideto Takami Yes 24624126 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Marine sediment 41.1773 142.2013 48697521 90731 53 0 97 2 0.0 Metagenome 3300070673 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Virginia, USA - BLAN_033-M-20200713-COMP-DNA1 3300070673 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Agricultural land Soil 8791614 27520 46 6 106 7 0.0 Metagenome 3300000704 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 9 DOE Joint Genome Institute (JGI) 3300000704 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 9942666 30648 39 0 82 0 SRX4338367 Unrestricted 0.0 Metagenome 3300030616 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Marine sediment archaeal communities from Little Sippewissett salt marsh, Falmouth, MA, United States - SSM-Form-2O DOE Joint Genome Institute (JGI) 3300030616 Metagenome Analysis spades v. 3.12.0 Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 2030186970 3749709 1318 8 2202 10 SRX5356210 Unrestricted 11.68 Metagenome 3300026484 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in the Atlantic and Pacific Ocean Hydrothermal vent microbial communities from Guaymas Basin, Mexico - 4561-384 DOE Joint Genome Institute (JGI) 3300026484 Metagenome Analysis spades v. 3.11.1 Yes Yes pgirguis@oeb.harvard.edu Peter Girguis No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent 27.0078 -111.4071 263515736 461653 263 6 342 6 SRX4801603 Unrestricted 64.2 Metagenome 3300043167 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_4500m_C5_0cm5cm (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043167 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 35.689 -123.0778 409743019 698302 195 6 328 2 SRX9141343 Unrestricted 45.46 Metagenome 2124908025 *Microbiome Permanent Draft Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan State University, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample from Bulk Soil Replicate 2: eDNA_1 v1 DOE Joint Genome Institute (JGI) 2124908025 Metagenome Analysis released based on JGI ITS No Yes tiedjej@msu.edu James Tiedje No Environmental Terrestrial Unclassified Soil Grasslands Miscanthus rhizosphere 42.406189 -85.40016 10867947 22426 46 0 59 0 Unrestricted 0.0 Metagenome 3300060369 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210605_09_09 DOE Joint Genome Institute (JGI) 3300060369 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 1174098305 1691627 387 272 479 371 Unrestricted 27.75 Metagenome 3300032307 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 17-107 Genome Quebec 3300032307 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.778379 -72.003987 482782927 930727 282 55 399 115 0.0 Metagenome 3300023713 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Xylan, Gen0, Rep 2 Spades (v3) (version 3) DOE Joint Genome Institute (JGI) 3300023713 Metagenome Analysis spades v. 3.11.1-check No Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4148 -119.8405 349839258 964016 362 5 639 6 SRX3963295 Unrestricted 0.0 Metagenome 3300035671 *Microbiome Permanent Draft Forest soil microbial communities from Eldorado National Forest, California, USA Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_CNT_3.2 DOE Joint Genome Institute (JGI) 3300035671 Metagenome Analysis metaspades v. 3.13.0 Yes Yes ndove7@gmail.com Nicholas Dove No Environmental Terrestrial Temperate forest Soil Bulk soil soil 38.8759 -120.4437 1993100657 4811179 1030 59 1908 88 SRX8239473 Unrestricted 8.3 Metagenome 3300046804 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Pamunkey River, New Kent, Virginia, USA - pamunkeyriver_2019_sw_WHONDRS-S19S_0054 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300046804 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 37.5728 -77.0239 511974281 884646 232 60 341 67 Unrestricted 0.0 Metagenome 3300035416 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from diseased Eunicella gazella from Algarve, Portugal - EG18N Euk Molecular Research LP (MR DNA) 3300035416 Metagenome Analysis Metawrap workflow v. 1.0.5 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 345795 400 0 1 0 2 0.0 Metagenome 2140918018 *Microbiome Finished Sulfur spring sediment and crust microbial communities from Zodletone, Oklahoma, USA Sulfur spring sediment and crust microbial communities from Zodletone, Oklahoma, USA - C3_filtered Mogene LC 2140918018 Metagenome Analysis released per JGI data release policy No Yes aspain@ou.edu Anne M. Spain, Anne Spain No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Sulfur spring sediment and crust 35.100293 -98.749601 7 32562431 88526 22911 225 2986 0 0.0 Metagenome 3300049600 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA8 DOE Joint Genome Institute (JGI) 3300049600 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 393692839 1045290 432 4 808 6 Unrestricted 7.01 Metagenome 3300006028 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG DOE Joint Genome Institute (JGI) 3300006028 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.4774 -85.451 4502491703 12308638 2807 213 4698 401 SRX2776984 Unrestricted 0.0 Metagenome 3300008742 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159814214 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008742 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 140209855 182679 101 1 130 0 0.0 Metagenome 3300008360 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 764224817 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008360 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 210505906 282078 203 0 307 0 0.0 Metagenome 3300013828 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01183 Weill Cornell Medical College 3300013828 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.7 -73.82 29732785 63154 26 0 41 0 SRX823138 0.0 Metagenome 3300038736 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A3_35cm_0M University of Tennessee 3300038736 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 96671252 226195 102 7 216 14 SRX710566 0.0 Metagenome 7000000010 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765135172 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000010 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 21014360 39469 0 0 0 0 0.0 Metagenome 3300027019 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 22 (SPAdes) DOE Joint Genome Institute (JGI) 3300027019 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 132250044 265708 119 6 213 21 SRX1984818 Unrestricted 0.0 Metagenome 3300038971 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-10-3_at_6-7_cm Genome Quebec 3300038971 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.88147 -73.76618 1025188459 2559194 908 18 1799 28 0.0 Metagenome 3300044524 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal system in Merced County, California, USA - LOSB16-9-18-19 DOE Joint Genome Institute (JGI) 3300044524 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 36.025 -120.8544 951544176 2270176 694 51 1124 89 Restricted 8.44 Metagenome 3300002362 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 03AUG2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002362 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 22001500 60644 103 4 170 4 SRX1989910 Unrestricted 0.0 Metagenome 3300013112 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 295m, 250-2.7um, replicate a Georgia Genomics Facility 3300013112 Metagenome Analysis IDBA 1.1.1 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 285443138 334473 108 15 144 15 0.0 Metagenome 3300049224 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_190109.NP1 DOE Joint Genome Institute (JGI) 3300049224 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 786600955 1799089 548 48 857 95 Unrestricted 13.22 Metagenome 3300005364 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG DOE Joint Genome Institute (JGI) 3300005364 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 5439999475 14814166 3520 130 5919 256 SRX2740366 Unrestricted 0.0 Metagenome 3300011222 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00452 Weill Cornell Medical College 3300011222 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.71 -74.0 39006774 60739 16 0 23 0 SRX822421 0.0 Metagenome 3300070739 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_040-M-20190807-COMP-DNA1 3300070739 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 22205695 65929 43 6 62 10 0.0 Metagenome 3300031890 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031890 Metagenome Analysis spades v. 3.12.0 Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Unclassified Soil 18.321 -65.8172 3840007912 7900287 882 17 1574 60 SRX5313695, SRX3604230 Unrestricted 0.0 Metagenome 3300045512 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Cordillera ecozone, Canada - Lake 13-521 Genome Quebec 3300045512 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 59.703067 -133.60852 1016652538 2187974 396 62 586 113 0.0 Metagenome 3300004232 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 88_LOW11 DOE Joint Genome Institute (JGI) 3300004232 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 110748290 235801 54 5 129 4 SRX2721165 Unrestricted 0.0 Metagenome 3300066303 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_045-O-20170621-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066303 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 18894385 56611 80 16 143 22 0.0 Metagenome 3300049442 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 soil DOE Joint Genome Institute (JGI) 3300049442 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.120965 -123.271442 5.48 812534124 1382813 299 25 523 30 Unrestricted 13.65 Metagenome 3300049904 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume viral communities from North Pacific Ocean - CTD007 v DOE Joint Genome Institute (JGI) 3300049904 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 9.838067 -104.2912 137144009 331013 58 3 98 4 Restricted 167.12 Metagenome 3300003417 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from California, USA - DAQCA-003 DOE Joint Genome Institute (JGI) 3300003417 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 20916588 44672 25 18 46 31 SRX2770404 Unrestricted 0.0 Metagenome 3300042514 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2017-rr0170 DOE Joint Genome Institute (JGI) 3300042514 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 888153337 1304092 282 43 373 52 Unrestricted 22.64 Metagenome 3300033233 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom DOE Joint Genome Institute (JGI) 3300033233 Metagenome Analysis spades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5107 -110.3566 2622353512 5814863 2182 16 3826 29 SRX7531672 Unrestricted 9.3 Metagenome 3300011902 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00265 Weill Cornell Medical College 3300011902 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.97 47514504 84358 33 1 52 1 SRX822238 0.0 Metagenome 3300011444 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2 DOE Joint Genome Institute (JGI) 3300011444 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9776 -107.0024 600729759 1258712 358 41 670 65 SRX3539425 Unrestricted 0.0 Metagenome 3300070905 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_071-O-20190826-COMP-DNA2 3300070905 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 4609755 15195 38 7 66 9 0.0 Metagenome 3300007901 *Microbiome Permanent Draft Army ant gut microbial communities Neotropical army ants gut microbial communities from Monteverde, Costa Rica - Eciton burchellii Gut microbial communities of Eciton burchellii 3300007901 Metagenome Analysis IDBA-UD released by JGI data releasing policy Yes Yes jar337@drexel.edu, yihu.bnu@gmail.com Jacob Russell, Yi Hu No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Neotropical army ants gut 10.306961 -84.809844 191728966 197909 4 49 4 323 0.0 Metagenome 3300013421 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100173 University of Pennsylvania 3300013421 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 5915568 11849 3 5 8 8 SRX756360 0.0 Metagenome 3300029625 *Microbiome Permanent Draft Thermal spring sediment microbial community from Yellowstone National Park, USA Mildly acidic thermal spring sediment microbial community from Yellowstone National Park, USA - SJ3 Spring University of Wisconsin, Madison 3300029625 Metagenome Analysis MEGAHIT v. 1.1.1 released by Daniel Colman No Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring 44.41595 -110.95576667 371479054 682991 282 4 351 8 0.0 Metagenome 3300043448 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lower Colorado River, Austin, Texas, USA - lowercolorado_2019_sw_WHONDRS-S19S_0063 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043448 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 30.2502 -97.7095 552709847 894916 294 109 453 157 Unrestricted 23.46 Metagenome 3300070225 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_037-O-20170801-COMP-DNA1 3300070225 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 32754557 99441 66 5 142 3 0.0 Metagenome 3300055016 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_121114.NP2 DOE Joint Genome Institute (JGI) 3300055016 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 747017203 1702050 573 112 898 217 Restricted 0.0 Metagenome 3300031684 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #230 DOE Joint Genome Institute (JGI) 3300031684 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 353023633 598137 113 21 123 38 SRX5649474 Unrestricted 40.35 Metagenome 3300056783 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - 5-1 DOE Joint Genome Institute (JGI) 3300056783 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 196310585 457018 404 16 820 19 Restricted 10.47 Metagenome 3300020519 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes) DOE Joint Genome Institute (JGI) 3300020519 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 97503601 210105 76 13 127 20 SRX1988272 Unrestricted 0.0 Metagenome 3300022863 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 1-5 DOE Joint Genome Institute (JGI) 3300022863 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0469 116441630 284774 154 23 241 35 SRX4415317, SRX8127808 Unrestricted 0.0 Metagenome 3300011855 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00997 Weill Cornell Medical College 3300011855 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.59 -73.78 45657854 69100 13 0 20 0 SRX822959 0.0 Metagenome 3300056621 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain - Blanes_Viral (Viral) DOE Joint Genome Institute (JGI) 3300056621 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Coastal Marine Unclassified Seawater 41.6833 2.8 998558280 2118991 6 5 9 6 Restricted 0.0 Metagenome 3300020358 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000768 (ERX555925-ERR599009) CEA Genoscope 3300020358 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -47.1906 -58.2682 483286168 1074174 294 61 389 120 0.0 Metagenome 3300005871 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius sp. 4 HERON ISLAND DOE Joint Genome Institute (JGI) 3300005871 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 549951811 1165405 18 7 32 11 SRX3340881 Unrestricted 0.0 Metagenome 3300001994 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot5-3 3300001994 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 963041 5710 35 1 50 2 0.0 Metagenome 3300001372 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin YB-Back-sed University of South Carolina 3300001372 Metagenome Analysis Velvet released per JGI data release policy No Yes mariyasmit@hotmail.com Mariya Smit, Mariya W. Smit No Environmental Aquatic Intertidal zone Marine Sediment Marine estuarine 46.15968 -123.80651 6.3 278210246 524872 221 16 466 33 0.0 Metagenome 3300046716 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 soil DOE Joint Genome Institute (JGI) 3300046716 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.58753 -123.19336 6.72 142101480 265881 157 13 327 20 Unrestricted 21.94 Metagenome 3300045083 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 002-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300045083 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9572 -106.9861 353515507 957548 379 29 641 37 Unrestricted 8.12 Metagenome 3300013396 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100184 University of Pennsylvania 3300013396 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 2526672 3866 4 3 4 1 SRX756349 0.0 Metagenome 3300025505 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 53-1 deep-072012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025505 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 225914444 534916 169 22 266 25 SRX1987652 Unrestricted 0.0 Metagenome 3300044277 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - AT3-9-26-19 DOE Joint Genome Institute (JGI) 3300044277 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.3422 -120.7055 441199929 1164681 605 69 1040 87 Restricted 6.9 Metagenome 3300009819 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S2_40_50 DOE Joint Genome Institute (JGI) 3300009819 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228379 -119.2717467 168923201 391039 209 4 429 7 SRX2523285 Unrestricted 0.0 Metagenome 3300022226 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_13 DOE Joint Genome Institute (JGI) 3300022226 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Sediment Marine Unclassified sediment 38.03 -122.37 1306477087 2685214 710 10 1289 12 SRX4055347 Unrestricted 8.54 Metagenome 3300033951 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Sorghum-adapted microbial communities enriched on wild type (WT) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - WT_Day14_1 DOE Joint Genome Institute (JGI) 3300033951 Metagenome Analysis spades v. 3.13.0 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 106567997 160488 127 0 154 0 SRX7519114 Unrestricted 0.0 Metagenome 3300047281 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Susquehanna River, Maryland, USA - NASQAN2015_081 DOE Joint Genome Institute (JGI) 3300047281 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 39.6579 -76.1741 348849482 734328 230 85 342 143 Unrestricted 33.99 Metagenome 3300002230 *Microbiome Permanent Draft Marine microbial communities from the Baltic Sea examining degradability of arctic, terrigenous carbon compounds in the sea Marine microbial communities from the Baltic Sea - M1t2 FKB2 (103N) Karolinska Institutet 3300002230 Metagenome Analysis released per JGI data release policy No Yes daniel.herlemann@io-warnemuende.de, daniel.herlemann@emu.ee Daniel Herlemann, Daniel P. Herlemann No Environmental Aquatic Oceanic Marine Unclassified Marine 58.133 10.0 240364684 1049039 184 29 350 45 0.0 Metagenome 3300000816 *Microbiome Draft Forest soil microbial communities from Amazon Forest, Brazil Forest soil microbial communities from Amazon forest - 2010 replicate II A10 DOE Joint Genome Institute (JGI) 3300000816 Metagenome Analysis released based on JGI ITS Yes Yes jorge@uta.edu, jmrodrigues@ucdavis.edu Jorge Rodrigues, Jorge L. Rodrigues Yes 30083144 Environmental Terrestrial Tropical forest Soil Bulk soil Forest soil -10.171667 -62.7875 67531173 175204 192 20 257 17 Unrestricted 0.0 Metagenome 3300031198 *Microbiome Permanent Draft Soil and ectomycorrhiza microbial communities from Populus trichocarpa stands in riparian zones in the Pacific Northwest, United States Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S DOE Joint Genome Institute (JGI) 3300031198 Metagenome Analysis spades v. 3.12.0 Yes Yes kpeay@stanford.edu Kabir Peay No Environmental Terrestrial Riparian zone Soil Trees stand soil 45.6996 -121.669 890201467 2548688 800 40 1396 55 SRX5650514 Unrestricted 7.89 Metagenome 3300070249 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Bartlett Experimental Forest, New Hampshire, USA - BART_040-O-20170613-COMP-DNA1 3300070249 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 23990685 72510 68 11 136 14 0.0 Metagenome 3300037049 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 E1 30-34 DOE Joint Genome Institute (JGI) 3300037049 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0467 620447600 1226334 348 4 577 8 SRX8138389 Unrestricted 10.66 Metagenome 3300045175 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_3_B DOE Joint Genome Institute (JGI) 3300045175 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 181864411 215518 110 2 130 1 Unrestricted 90.31 Metagenome 3300014555 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS56_24 University of Hohenheim 3300014555 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 101919673 166879 70 0 119 0 0.0 Metagenome 7000000022 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159146620 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000022 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 44632796 65530 0 0 0 0 0.0 Metagenome 3300006473 *Microbiome Permanent Draft Microbial communities from manure storage tank from Sherbrooke, QC, Canada Microbial communities from pig manure storage tank from Sherbrooke, QC, Canada, enriched culture C1 Agriculture and Agri-Food Canada 3300006473 Metagenome Analysis Trinity released per JGI data release policy No Yes jennifer.town@agr.gc.ca, Jennifer.town@agr.gc.ca Jennifer Town No Engineered Solid waste Unclassified Animal waste Unclassified Manure 45.4 -71.9 45492876 89172 68 3 102 5 0.0 Metagenome 3300034971 *Microbiome Finished Coastal sediment microbial communities from Western Antarctica Coastal sediment microbial communities from Western Antarctica - 1_core9 Megahit 9 Michigan State University 3300034971 Metagenome Analysis Megahit v. 1.1 released by Deric Learman No Yes deric.learman@cmich.edu Deric Learman No Environmental Aquatic Coastal Marine Sediment marine sediment -71.4234 -91.4268 7.4 412471069 537049 57 13 128 17 0.0 Metagenome 3300034736 *Microbiome Permanent Draft Marine microbial communities from Baffin Bay, Canada Marine microbial communities from Baffin Bay, Canada - S108_1m Genome Quebec 3300034736 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes thomas.grevesse@gmail.com Thomas Grevesse No Environmental Aquatic Oceanic Marine Photic zone marine 76.16205 -74.35773 520016714 1182353 252 141 411 290 0.0 Metagenome 3300012239 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100111 University of Pennsylvania 3300012239 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 13996579 32815 14 0 16 0 SRX756719 0.0 Metagenome 3300022906 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L223-509R-6 DOE Joint Genome Institute (JGI) 3300022906 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 420965229 994550 568 112 972 174 SRX4800283 Unrestricted 8.24 Metagenome 3300023044 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E4 DOE Joint Genome Institute (JGI) 3300023044 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Elk feces 38.04 -122.5 102460423 235244 279 15 491 28 SRX4415392 Unrestricted 9.24 Metagenome 3300026001 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_104 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026001 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 36779321 103975 114 3 174 5 SRX2564940, SRX2581049 Unrestricted 0.0 Metagenome 3300050266 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_20 DOE Joint Genome Institute (JGI) 3300050266 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.873 160.755 314021719 504311 56 15 67 28 SRX18235898 Restricted 36.84 Metagenome 3300029516 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005366-25 Beijing Genomics Institute (BGI) 3300029516 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 172790873 210829 148 0 188 0 0.0 Metagenome 3300033743 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 E1 5-9 DOE Joint Genome Institute (JGI) 3300033743 Metagenome Analysis spades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0467 275979700 663921 279 8 521 10 SRX8138224, SRX8138225 Unrestricted 0.0 Metagenome 3300070852 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Treehaven, Wisconsin, USA - TREE_006-M-20170707-COMP-DNA1 3300070852 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 93737177 276682 180 14 373 25 0.0 Metagenome 3300020193 *Microbiome Permanent Draft Freshwater microbial communities from Lake Tanganyika, Tanzania Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015053 Kigoma Offshore 120m DOE Joint Genome Institute (JGI) 3300020193 Metagenome Analysis spades v. 3.10.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater lake -4.8915 29.586 1412672682 2436012 546 22 827 39 SRX3984332 Unrestricted 32.56 Metagenome 3300013575 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100215 University of Pennsylvania 3300013575 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 1764024 5432 11 0 18 0 SRX756684 0.0 Metagenome 3300006294 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765135172 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006294 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 40199665 61263 40 0 51 0 0.0 Metagenome 3300025446 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_16_100 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025446 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 227323873 392137 94 0 131 2 SRX3003646 Unrestricted 0.0 Metagenome 3300045520 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_2_E DOE Joint Genome Institute (JGI) 3300045520 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 158264171 182984 95 1 117 1 Unrestricted 112.12 Metagenome 3300003129 *Microbiome Permanent Draft Olavius algarvensis microbial communities from Capo di Sant'Andrea bay, Elba, Italy Olavius algarvensis microbial community from off the coast of Capo di Sant Andrea, Elba, Italy DOE Joint Genome Institute (JGI), Max Planck Institute 3300003129 Metagenome Analysis Made public because these are downloaded from Genbank No Yes ndubilie@mpi-bremen.de Nicole Dubilier Yes 16980956 Host-associated Annelida Unclassified Integument Unclassified Olavius algarvensis 42.807222 10.141111 23735628 27302 5 1 4 2 0.0 Metagenome 3300048103 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_110420.NP2 DOE Joint Genome Institute (JGI) 3300048103 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 826229393 1805394 442 46 713 72 Unrestricted 15.09 Metagenome 3300001884 *Microbiome Permanent Draft Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils (2) Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils - Sample13 3300001884 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Terrestrial Unclassified Soil Grasslands Grassland soil 23.850674 69.734802 0 0 0 0 0 0 0.0 Metagenome 3300001219 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from the Mid Cayman Rise Von Damm vent site Mid Cayman Rise 3300001219 Metagenome Analysis Velvet, MetaVelvet, Minimus released by JGI data releasing policy No Yes menli@umich.edu Meng Li No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 18.3763 -81.7891 3204911 3255 1 0 3 0 0.0 Metagenome 3300049098 *Microbiome Permanent Draft Marine sediment microbial communities from Pacific Ocean, California, USA Marine sediment microbial communities from Pacific Ocean, California, USA - FI_004 DOE Joint Genome Institute (JGI) 3300049098 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pjensen@ucsd.edu Paul r. Jensen No Environmental Aquatic Intertidal zone Marine Sediment Marine sediment 32.77 -117.22 516556448 838324 278 29 493 30 Unrestricted 14.93 Metagenome 3300047330 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Frasne, France - Sphagnum fallax 4C_SF_FR DOE Joint Genome Institute (JGI) 3300047330 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 1370060721 2348338 508 155 774 242 SRX14787545 Unrestricted 10.66 Metagenome 3300002381 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 13SEP2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002381 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 37224008 91443 76 11 131 21 SRX1989919 Unrestricted 0.0 Metagenome 3300026777 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - site 1 bottle 14 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026777 Metagenome Analysis spades v. 3.11.1 Yes Yes blumerschuette@oakland.edu; rmkelly@ncsu.edu Sara Blumer-Schuette; Robert Kelly No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6102 -110.4387 14224969 19280 41 0 36 0 SRX2554490 Unrestricted 0.0 Metagenome 3300013120 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 900m, 250-2.7um, replicate a Georgia Genomics Facility 3300013120 Metagenome Analysis IDBA 1.1.1 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 1033286945 1150133 325 15 427 18 0.0 Metagenome 3300029107 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 105_4M Beijing Genomics Institute (BGI) 3300029107 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 42015137 53268 28 1 36 0 ERX490930 0.0 Metagenome 3300011210 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00207 Weill Cornell Medical College 3300011210 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.98 33851428 50324 22 0 29 0 SRX822186 0.0 Metagenome 7000000651 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 159510762 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000651 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 181325674 306618 0 0 0 0 0.0 Metagenome 3300071003 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_004-M-20210525-COMP-DNA1 3300071003 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 927097 3072 7 0 16 0 0.0 Metagenome 3300049577 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 DOE Joint Genome Institute (JGI) 3300049577 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.40849 -82.168434 1174939353 1994328 489 12 896 20 Unrestricted 14.7 Metagenome 3300011699 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00313 Weill Cornell Medical College 3300011699 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.73 -74.0 32540734 45403 15 0 18 0 SRX822286 0.0 Metagenome 3300006919 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 DOE Joint Genome Institute (JGI) 3300006919 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes chenf@umces.edu, bcampb7@clemson.edu; chenf@umces.edu Feng Chen, Barbara Campbell; Feng Chen Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.12 -75.25 904891472 2204970 6 1 1 5 SRX2838064, SRX3786194, SRX3786195 Unrestricted 0.0 Metagenome 3300046088 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_7 DOE Joint Genome Institute (JGI) 3300046088 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 35550065 103158 236 41 406 59 Unrestricted 0.0 Metagenome 3300014715 *Microbiome Permanent Draft Human skin microbial communities from psoriasis patients in Trento, Italy Human skin microbial communities from psoriasis patients in Trento, Italy - SKCT13_b2_45 University of Trento 3300014715 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Skin surface Human skin 46.0667 11.1167 2694329 3981 2 0 4 1 SRX1015762 0.0 Metagenome 3300038590 *Microbiome Permanent Draft Serpentinized rock microbial communities from various locations Hydrothermal vent fluid microbial communities from Atlantic Lost City Hydrothermal Field, Atlantic Ocean - LC_3862_1325 Marine Biological Laboratory 3300038590 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.12397 -42.120113 106104644 230305 130 4 249 5 0.0 Metagenome 3300043092 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver small intestine microbial communities from Maple Ridge, British Columbia, Canada - Beaver5Small.Intestine1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043092 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Small intestine Digestive system Unclassified small intestine 49.18 -122.54 345873322 555343 2 1 4 6 SRX8346253 Unrestricted 17.5 Metagenome 3300027928 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_10_10 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027928 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 13645902 21957 31 0 23 0 SRX2924360 Unrestricted 0.0 Metagenome 3300042496 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D263_3 DOE Joint Genome Institute (JGI) 3300042496 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 170388795 244551 130 8 189 11 Unrestricted 66.83 Metagenome 3300000678 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 46 DOE Joint Genome Institute (JGI) 3300000678 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 5238197 17490 19 0 52 0 SRX4340968 Unrestricted 0.0 Metagenome 3300014768 *Microbiome Permanent Draft Synthetic microbial community for library methods comparison from University of Liverpool, United Kingdom Synthetic microbial communities for library methods comparison from University of Liverpool, United Kingdom - Mg6 University of Liverpool 3300014768 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 53.405936 -2.9677609 76864262 154051 81 0 102 1 ERX1325889 0.0 Metagenome 3300028573 *Microbiome Permanent Draft Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG DOE Joint Genome Institute (JGI) 3300028573 Metagenome Analysis spades v. 3.11.1 Yes Yes rbneum@uw.edu Rebecca Neumann No Host-associated Plants Rhizosphere Roots Soil rhizosphere 47.6516 -122.3045 734587054 1671551 482 25 731 43 SRX5271540 Unrestricted 9.36 Metagenome 3300001690 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3-12 DOE Joint Genome Institute (JGI) 3300001690 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 330659 1179 23 0 44 2 SRX1990535 Unrestricted 0.0 Metagenome 3300000333 *Microbiome Draft European and Africanized bee gut microbial communities from the USDA-ARS Beltsville Bee Research Center Honey bee gut microbial communities from New Haven, Connecticut, USA - Honey Bee colony DOE Joint Genome Institute (JGI) 3300000333 Metagenome Analysis released based on JGI ITS Yes Yes stringe@lbl.gov, nancy.moran@austin.utexas.edu Susannah Tringe, Nancy A. Moran No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Honey bee gut 41.31 -72.92 250451513 619364 103 20 234 30 Unrestricted 0.0 Metagenome 3300027208 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius geniculatus HERON ISLAND.2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027208 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 454881483 391196 19 1 20 2 SRX3340720 Unrestricted 0.0 Metagenome 3300029756 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 016_6_5_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029756 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 164306255 215979 119 0 164 0 0.0 Metagenome 3300054569 *Microbiome Permanent Draft Soil microbial communities from pasture in Hopland Research and Extension Center, CA, USA Soil viral communities from pasture in Hopland Research and Extension Center, CA, USA - T3-H218O+P-B library kit 1SPlus DOE Joint Genome Institute (JGI) 3300054569 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes trubl1@llnl.gov Gareth Trubl No Environmental Terrestrial Pasture Soil Unclassified Soil 39.00177 -123.06967 45168374 117954 36 1 90 3 Unrestricted 589.19 Metagenome 3300049790 *Microbiome Permanent Draft Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama - S036_CH12_fluctuating_T5 DOE Joint Genome Institute (JGI) 3300049790 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes njbouskill@lbl.gov Nicholas Bouskill No Environmental Terrestrial Tropical forest Soil Bulk soil Soil 9.17936 -79.8296 327923800 908879 367 18 638 33 Unrestricted 7.15 Metagenome 3300012197 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00820 Weill Cornell Medical College 3300012197 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.98 40429670 70237 31 0 47 0 SRX822786 0.0 Metagenome 3300029580 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35365 Beijing Genomics Institute (BGI) 3300029580 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 210700139 267272 177 2 250 4 0.0 Metagenome 3300010214 *Microbiome Permanent Draft Freshwater microbial communities enriched with nitrile substrates Freshwater aquifer microbial community from Bangor, North Wales, UK, enriched with nitrile substrate, replicate 1 Fidelity Systems Inc 3300010214 Metagenome Analysis Phred/Phrap/Consed v. 23.0 released per JGI data release policy Yes Yes stepan.toshchakov@gmail.com Stepan Toshchakov No Environmental Aquatic Groundwater Deep subsurface Unclassified freshwater 53.23 -4.13 80868591 118486 25 0 32 0 0.0 Metagenome 3300032254 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month chalcopyrite DOE Joint Genome Institute (JGI) 3300032254 Metagenome Analysis spades v. 3.13.0 Yes Yes jbeam@bigelow.org; demerson@bigelow.org Jake Beam; David Emerson No Environmental Aquatic Coastal Marine Sediment microbial mat 43.8603 -69.5781 421264889 709658 244 53 353 90 SRX5822400 Unrestricted 55.58 Metagenome 3300044659 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2E DOE Joint Genome Institute (JGI) 3300044659 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Unclassified Roots Unclassified Root 14.75 -16.85 1098936052 1604306 17 36 34 60 Unrestricted 28.86 Metagenome 3300038777 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog56 BILS 3300038777 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 2450503 6070 7 0 7 0 ERX1594878 0.0 Metagenome 3300035252 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_2a_3_7 mgh University of Alberta 3300035252 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified wastewater 56.7292 -111.3885 16821251 22645 10 0 23 0 0.0 Metagenome 3300022450 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1BM3 JM3 AGRF 3300022450 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 44892349 84997 31 0 50 0 0.0 Metagenome 3300005273 *Microbiome Permanent Draft Hypersaline microbial communities from Antarctic Deep Lake Hypersaline microbial communities from Antarctic Deep Lake - 24m 0.8um v2 (version 3) DOE Joint Genome Institute (JGI) 3300005273 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli, Rick Cavicchioli; Michelle Allen Yes 24082106 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline -68.54 78.18 60099211 130693 82 1 122 1 Unrestricted 0.0 Metagenome 3300003096 *Microbiome Permanent Draft Food microbial community from Turkish kefir grains Turkish kefir grains microbial communities from Imzir, Turkey - Kefir Grain Sample 1 Istanbul Bilgi University 3300003096 Metagenome Analysis SOAPdenovo v. May-2012 Made public because these are downloaded from Genbank No Yes handan.can@bilgi.edu.tr Can,H Yes 24750812 Engineered Food production Fermented dairy products Dairy products Unclassified Food 38.459491 27.22932 5186511 7749 0 1 0 3 0.0 Metagenome 3300049074 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - J11_A_BS (version 2) DOE Joint Genome Institute (JGI) 3300049074 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 268673207 620838 606 10 1289 16 Unrestricted 0.0 Metagenome 3300043679 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 424-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043679 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9748 -107.0665 318347381 868341 380 13 699 21 Unrestricted 7.47 Metagenome 3300024331 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09 DOE Joint Genome Institute (JGI) 3300024331 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 269087133 639530 262 18 497 18 SRX4547510 Unrestricted 8.59 Metagenome 3300002492 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant NP 2012 DOE Joint Genome Institute (JGI) 3300002492 Metagenome Analysis Yes Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic microbial mat 44.534 -110.7978 269970294 510790 244 1 377 2 SRX2554556 Unrestricted 0.0 Metagenome 3300054100 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10 re-annotation DOE Joint Genome Institute (JGI) 3300054100 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 1024848153 2095756 438 55 776 88 SRX3960468 0.0 Metagenome 3300004087 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius tantulus BELIZE.1 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300004087 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 604665577 1428326 61 9 120 14 SRX3299596, SRX3299597 Unrestricted 0.0 Metagenome 3300000880 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A35-65cm-20A)- 1 week illumina University of Tennessee 3300000880 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 169915914 637618 380 1 705 6 0.0 Metagenome 3300026246 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from above oceans and continental USA - SEAC4RS-RF8-007 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026246 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 18226442 58123 60 7 107 12 Unrestricted 0.0 Metagenome 3300050221 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Warrenville, Illinois, USA - 56_711_IL_DR_1m_c2_T1_16O DOE Joint Genome Institute (JGI) 3300050221 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 41.84145 -88.2298 967830806 1476443 249 7 393 8 Restricted 13.38 Metagenome 3300007071 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC8 2012 metaG DOE Joint Genome Institute (JGI) 3300007071 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jkjarett@lbl.gov, jkjarett@lbl.gov; rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca Jessica Jarett, Jessica Jarett; Ramunas Stepanauskas; Peter Dunfield No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 49.9543 -116.5155 7.94 249435303 346079 227 0 330 0 SRX2839019 Unrestricted 0.0 Metagenome 3300037275 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_C3 DOE Joint Genome Institute (JGI) 3300037275 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 790453995 1832307 424 63 715 86 SRX8397091 Unrestricted 6.69 Metagenome 3300021066 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego desert, Southern California, United States - S3_10-13C DOE Joint Genome Institute (JGI) 3300021066 Metagenome Analysis spades v. 3.10.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.305 -116.2547 227159040 579838 287 9 507 26 SRX3936777 Unrestricted 24.28 Metagenome 3300027403 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A5-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300027403 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 23985483 79127 94 5 188 4 SRX1990524 Unrestricted 0.0 Metagenome 3300014940 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 626_12M Beijing Genomics Institute (BGI) 3300014940 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 100003510 136136 62 0 90 0 ERX491279 0.0 Metagenome 3300046780 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 soil DOE Joint Genome Institute (JGI) 3300046780 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121307 -123.269236 5.07 1124554059 1826531 330 25 560 37 Unrestricted 13.09 Metagenome 3300035181 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - RO1DNA_8/2/18_1/3_sediment DOE Joint Genome Institute (JGI) 3300035181 Metagenome Analysis metaspades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5106 -110.3566 1822235338 3085339 916 233 1365 326 SRX8282441 Unrestricted 22.52 Metagenome 3300000694 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 15 DOE Joint Genome Institute (JGI) 3300000694 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 7182717 23509 41 5 89 8 SRX4338977 Unrestricted 0.0 Metagenome 3300037340 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 20-24 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037340 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0472 960726895 1960490 345 11 619 17 SRX4415342, SRX8128069 Unrestricted 0.0 Metagenome 3300037762 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_072517_94_103_jgi DOE Joint Genome Institute (JGI) 3300037762 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2536560289 3987341 793 11 1231 12 SRX9162757 Unrestricted 16.06 Metagenome 3300027322 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027322 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 49414667 63351 71 0 57 0 SRX3195089 Unrestricted 0.0 Metagenome 3300044985 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_3000m_C1_0cm (v2) (version 2) DOE Joint Genome Institute (JGI) 3300044985 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.799 -121.0256 3365220313 5537263 997 20 1664 23 SRX9604192, SRX9604193 Unrestricted 0.0 Metagenome 3300022534 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1 DOE Joint Genome Institute (JGI) 3300022534 Metagenome Analysis spades v. 3.11.1-check Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified groundwater sediment 38.9201 -106.9487 .3 508715534 1201379 416 4 791 20 SRX4394282 Unrestricted 0.0 Metagenome 3300019886 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - H2c2 DOE Joint Genome Institute (JGI) 3300019886 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9871 -107.0011 401691260 815079 210 22 452 38 SRX3958487, SRX3958486 Unrestricted 0.0 Metagenome 3300014060 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Geyser, Utah, USA Freshwater microbial communities from Crystal Geyser, Utah, USA - CG_3.0 University of California, Berkeley 3300014060 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Released per Supratim -- IMGSUPP-1541 Yes Yes jkjarett@lbl.gov Jessica Jarett Yes 27112493 Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 38.938 -110.08 1002797603 1880132 711 15 1309 33 SRX667892 0.0 Metagenome 3300054084 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_6_150 re-annotation DOE Joint Genome Institute (JGI) 3300054084 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 343158266 670118 196 3 323 6 SRX3002037 0.0 Metagenome 3300025532 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA1M (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025532 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu; shaomei.he@gmail.com Katherine McMahon; Shaomei He No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 284569297 564400 193 53 331 92 SRX2518393 Unrestricted 0.0 Metagenome 3300055497 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.1W.11 SIP fraction DOE Joint Genome Institute (JGI) 3300055497 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 309283537 518471 313 74 477 130 Unrestricted 27.0 Metagenome 3300012081 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Florida, USA - TSFL087 MetaG DOE Joint Genome Institute (JGI) 3300012081 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 30.4401 -84.4954 189433526 383285 175 9 355 15 SRX3539726 Unrestricted 0.0 Metagenome 3300043733 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - FA_A75 DOE Joint Genome Institute (JGI) 3300043733 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.1335 -62.8884 811397867 2159079 334 10 648 11 Unrestricted 9.0 Metagenome 3300048027 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_200311.NP1 DOE Joint Genome Institute (JGI) 3300048027 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 735105099 1556655 405 87 679 138 Unrestricted 13.61 Metagenome 3300000425 *Microbiome Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine microbial community from Union City, CA, USA - Pond 2C Liquid 2 DOE Joint Genome Institute (JGI) 3300000425 Metagenome Analysis released based on JGI ITS Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Enviromental 37.569017 -122.102433 131906500 297522 207 38 342 63 Unrestricted 0.0 Metagenome 3300014644 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01412 Weill Cornell Medical College 3300014644 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.84 -73.9 23300885 34499 18 0 20 1 SRX823352 0.0 Metagenome 3300069496 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_026-M-20170605-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069496 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 8161629 23382 32 0 56 0 0.0 Metagenome 3300001978 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6 DOE Joint Genome Institute (JGI) 3300001978 Metagenome Analysis Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 146205161 449990 589 52 1109 62 SRX2554618 Unrestricted 0.0 Metagenome 3300044746 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 156-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044746 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9828 -107.0095 565249444 1598201 581 24 1106 43 Unrestricted 6.63 Metagenome 3300029023 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 383_12M Beijing Genomics Institute (BGI) 3300029023 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 76307686 89109 54 0 93 0 ERX491116 0.0 Metagenome 3300010999 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015 Shell Corporation 3300010999 Metagenome Analysis idba_ud released by JGI data releasing policy No Yes nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis No Environmental Terrestrial Ranch Soil Agricultural land soil 52.172047 -113.738964 2128591836 9506058 1014 32 1947 97 0.0 Metagenome 3300039351 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 582_4M Beijing Genomics Institute (BGI) 3300039351 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 25584302 28008 18 0 28 0 ERX491232 0.0 Metagenome 3300004191 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 61_LOW9 DOE Joint Genome Institute (JGI) 3300004191 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 69422929 154220 35 0 48 0 SRX2720759 Unrestricted 0.0 Metagenome 3300029364 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 074_4_26_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029364 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 181133993 251070 210 0 263 0 0.0 Metagenome 3300040812 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Seawater microbial communities from Western North Atlantic Ocean - Oce1_SurfDA DOE Joint Genome Institute (JGI) 3300040812 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Oceanic Marine Unclassified seawater 35.0018 -73.5968 599455098 1017556 267 52 392 82 SRX9641569 Unrestricted 22.15 Metagenome 3300071127 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_002-O-20190715-COMP-DNA1 3300071127 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 18080 68 2 0 1 0 0.0 Metagenome 3300019996 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - L3a2 DOE Joint Genome Institute (JGI) 3300019996 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9136 -106.8951 135707892 285446 181 11 367 19 SRX3943003, SRX3943004 Unrestricted 0.0 Metagenome 3300003631 *Microbiome Permanent Draft Hypersaline viral and bacterial communities from Bras del Port, Santa Pola, Spain Hypersaline viral communities from Bras del Port, Santa Pola, Spain - LoValdivia P1 Lifesequencing S.L. 3300003631 Metagenome Analysis released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline samples 38.192206 -0.591865 19344232 39542 1 0 3 0 0.0 Metagenome 2030936005 *Microbiome Permanent Draft Cyphomyrmex longiscapus fungus garden microbial communities from Gamboa, Panama Cyphomyrmex longiscapus fungus garden microbial communities from Gamboa, Panama DOE Joint Genome Institute (JGI) 2030936005 Metagenome Analysis Newbler released based on JGI ITS No Yes gsuen@wisc.edu, currie@bact.wisc.edu Garret Suen, Cameron Currie Yes 25406380 Environmental Terrestrial Insects nest Nest Fungus garden/Fungus gallery Cyphomyrmex longiscapus fungus garden 9.1167 -79.7 88331577 190674 19 0 62 0 Unrestricted 0.0 Metagenome 3300035097 *Microbiome Permanent Draft Forest soil microbial communities from Eldorado National Forest, California, USA Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.1 DOE Joint Genome Institute (JGI) 3300035097 Metagenome Analysis metaspades v. 3.13.0 Yes Yes ndove7@gmail.com Nicholas Dove No Environmental Terrestrial Temperate forest Soil Bulk soil soil 38.7833 -120.2991 1181082795 3017293 1012 112 1893 183 SRX7659675 Unrestricted 8.57 Metagenome 3300008490 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 638754422 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008490 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 192255658 259830 175 0 228 0 0.0 Metagenome 3300010033 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Petempiche,Puerto Morelos, Mexico - Orbicella T R C metagenome DOE Joint Genome Institute (JGI) 3300010033 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes momedinamunoz@gmail.com Medina Medina No Host-associated Invertebrates Coral Cnidaria Unclassified Coral 20.9047 -86.8366 1238507470 1746449 191 282 329 525 SRX2525669 Unrestricted 0.0 Metagenome 3300005625 *Microbiome Permanent Draft Activated sludge microbial communities from EBPR reactors in the US and Australia Activated sludge viral communities from EBPR reactors in Madison, Wisconsin, USA v1 DOE Joint Genome Institute (JGI) 3300005625 Metagenome Analysis Phrap 4, JAZZ released based on JGI ITS No Yes phugenholtz@lbl.gov Phil Hugenholtz Yes 16998472 Engineered WWTP Unclassified Activated sludge Unclassified Activated sludge 43.078418 -89.386482 5803445 10842 3 0 5 0 Unrestricted 0.0 Metagenome 3300024280 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Miss_RepC_8d DOE Joint Genome Institute (JGI) 3300024280 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 143934301 307967 149 16 222 20 SRX4547486 Unrestricted 14.56 Metagenome 3300049450 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 soil DOE Joint Genome Institute (JGI) 3300049450 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121285 -123.269504 4.85 1044309440 1701332 341 24 546 42 Unrestricted 13.89 Metagenome 3300003335 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from above oceans and continental USA - SDPR-002 DOE Joint Genome Institute (JGI) 3300003335 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 3334282 10592 5 1 13 1 Unrestricted 0.0 Metagenome 3300022074 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 56 SPOT_SRF_2014-09-10 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022074 Metagenome Analysis spades v. 3.11.1-check Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 470085614 1093779 80 42 153 64 SRX5471865, SRX5471864, SRX5471863 Unrestricted 0.0 Metagenome 3300014832 *Microbiome Permanent Draft Activated sludge bacterial and viral communities from EBPR bioreactors in Australia Activated sludge bacterial and viral communities from EBPR bioreactors in Brisbane, Australia - M90108 California Institute of Technology 3300014832 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Activated sludge -27.485973 153.190699 488448410 1099405 316 26 589 42 SRX646156 0.0 Metagenome 3300053162 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 endosphere DOE Joint Genome Institute (JGI) 3300053162 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121108 -123.269142 655897060 1008903 147 96 220 150 Unrestricted 0.0 Metagenome 3300026734 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN393 (SPAdes) DOE Joint Genome Institute (JGI) 3300026734 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Soil 44.20517707 -122.1284473 21938783 68126 77 2 138 5 SRX1986735 Unrestricted 0.0 Metagenome 3300041415 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P17_D2 (version 2) DOE Joint Genome Institute (JGI) 3300041415 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 1408541772 2143399 309 32 519 39 SRX10165518 Unrestricted 0.0 Metagenome 2209111014 *Microbiome Permanent Draft Diaphorina citri microbial communities from Florida, USA Host-associated microbial communities from Diaphorina citri thoracic segments in Florida, USA - ACP Illumina 2209111014 Metagenome Analysis Velvet released per JGI data release policy No Yes ss2489@cornell.edu Surya Saha No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Host-associated 27.4278263 -80.4108902 307864922 563132 10 0 16 0 0.0 Metagenome 3300025072 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025072 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -16.21 -76.61 198675324 447989 28 0 39 1 SRX2929102 Unrestricted 0.0 Metagenome 3300069516 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_027-M-20160803-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069516 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 31175408 109757 65 4 130 3 0.0 Metagenome 3300012545 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100348 University of Pennsylvania 3300012545 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 10938209 16455 20 0 27 2 SRX756309 0.0 Metagenome 3300050373 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - EG-03_D100 (version 3) DOE Joint Genome Institute (JGI) 3300050373 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3533 19.0466 311743492 621096 289 0 511 0 Restricted 0.0 Metagenome 3300007531 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764224817 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007531 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 203323407 286406 143 0 237 0 0.0 Metagenome 3300041468 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover leaf microbial community from Lincoln, Canterbury, New Zealand - WCL17_3 MetaG AgResearch, New Zealand, Mosgeil 3300041468 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 564142155 658990 69 1017 173 1260 0.0 Metagenome 3300022790 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY9 Version 2 University of New South Wales 3300022790 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 23229986 40192 22 0 41 0 0.0 Metagenome 3300070535 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt-Chequamegon, Wisconsin, USA - STEI_008-O-20160721-COMP-DNA1 Battelle Memorial Institute 3300070535 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 45.802505 -90.062109 4.75-5.25 2082755 6857 18 4 31 6 0.0 Metagenome 3300038486 *Microbiome Permanent Draft Acid mine drainage microbial biofilm communities from Richmond Mine, California, USA Acid mine drainage biofilm communities from Richmond mine site AB20, Iron Mt, CA, USA - AMDAB200606DS0 University of California, Berkeley 3300038486 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 40.67542 -122.53025 5788238 8971 3 0 8 0 0.0 Metagenome 3300040702 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_001-M-20140516-COMP-DNA1 Argonne National Laboratory 3300040702 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 1005709 3058 13 3 21 4 ERX2134035 0.0 Metagenome 3300002752 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-A DOE Joint Genome Institute (JGI) 3300002752 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.33 51609 143 4 8 15 15 SRX1991364 Unrestricted 0.0 Metagenome 3300049261 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB13 DOE Joint Genome Institute (JGI) 3300049261 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 274007605 689014 610 23 1241 22 Unrestricted 13.72 Metagenome 3300012138 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Georgia, USA - TSGA056 MetaG DOE Joint Genome Institute (JGI) 3300012138 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 32.5454 -82.1221 146130721 262574 166 380 244 743 SRX3539525 Unrestricted 0.0 Metagenome 3300005321 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila suzukii male 1 gut Cornell University 3300005321 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy No Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila suzukii male adult gut 42.875296 -77.006403 200891315 351871 2 4 3 11 0.0 Metagenome 3300007817 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius tantulus BAHAMAS.1 DOE Joint Genome Institute (JGI) 3300007817 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 291458828 376702 4 2 6 4 SRX2711948 Unrestricted 0.0 Metagenome 3300001822 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM39, ROCA_DNA108_2.0um_23a 3300001822 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River plume Marine Plankton Marine plankton 10.6822 -54.4213 12308997 31093 13 25 17 60 0.0 Metagenome 3300005754 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS841 Marine Biological Laboratory 3300005754 Metagenome Analysis assembly with Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow hydrothermal vent diffuse flow fluids 18.375023 -81.797603 5.9 72829646 438836 86 20 196 31 0.0 Metagenome 3300015317 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_20JUN2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015317 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 183412315 316093 6 103 13 172 SRX3923111 Unrestricted 8.08 Metagenome 3300007264 *Microbiome Permanent Draft Hydrothermal vent microbial communities from Teddy Bear hydrothermal vent, East Pacific Rise Hydrothermal vent microbial communities from Teddy Bear hydrothermal vent, East Pacific Rise - large volume pump, sample 8 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300007264 Metagenome Analysis MEGAHit released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal fluid 9.847222 -104.2975 42911142 119500 387 23 676 42 0.0 Metagenome 3300017821 *Microbiome Permanent Draft Coastal wetland sediment microbial communities from the Mid-Atlantic and Southeast Atlantic Coast of USA, responding to salinity intrusion. Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2 DOE Joint Genome Institute (JGI) 3300017821 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Freshwater sediment 35.9061 -76.1569 478544368 982348 368 4 610 12 SRX4367389 Unrestricted 5.74 Metagenome 3300060358 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210527_00_21 DOE Joint Genome Institute (JGI) 3300060358 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 780554249 1103989 205 159 257 226 Unrestricted 27.18 Metagenome 3300006802 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 DOE Joint Genome Institute (JGI) 3300006802 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes chenf@umces.edu, chenf@umces.edu; bcampb7@clemson.edu Feng Chen, Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.12 -75.25 1270200114 3162101 4 2 2 2 SRX2838765 Unrestricted 0.0 Metagenome 3300027055 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - Naphthalene biodegradation metagenome 12C3dose (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027055 Metagenome Analysis spades v. 3.11.1 Yes Yes elm3@cornell.edu Eugene Madsen Yes 30051558 Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.099444 -73.604444 71829846 146170 113 1 153 2 Unrestricted 0.0 Metagenome 3300008510 *Microbiome Permanent Draft Microbial Communities in Water bodies, Singapore Microbial Communities in Water bodies, Singapore - Site RA Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300008510 Metagenome Analysis clc genomics workbench 8 released per JGI data release policy No Yes erinscm@nus.edu.sg Charmaine Ng No Environmental Aquatic Unclassified Freshwater Unclassified water bodies 1.3 103.8 123754461 302742 51 22 123 51 0.0 Metagenome 3300013002 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta sexdens ASBM2 DOE Joint Genome Institute (JGI) 3300013002 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Fungi Unclassified Mycelium Unclassified fungus garden -21.165 -47.853 806785955 1094051 327 216 558 400 SRX3527532 Unrestricted 27.72 Metagenome 3300011532 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00655 Weill Cornell Medical College 3300011532 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.86 -73.92 21203371 33099 9 0 19 0 SRX822622 0.0 Metagenome 3300039047 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample41 King Abdulaziz City for Science and Technology (KACST) 3300039047 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 27.53 34.3 31099666 72820 46 0 90 1 SRX1097610 0.0 Metagenome 3300065505 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume viral communities from Gulf of California, Mexico - CTD-FK190211-025-250m-0.03 v DOE Joint Genome Institute (JGI) 3300065505 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 23.95663 -108.86187 406278622 980368 156 10 327 11 Restricted 0.0 Metagenome 2032320009 *Microbiome Permanent Draft Mountain Pine Beetle microbial communities from Alberta and British Columbia, Canada Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine DOE Joint Genome Institute (JGI) 2032320009 Metagenome Analysis Newbler No Yes gsuen@wisc.edu Garret Suen Yes 25406380 Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Mountain Pine Beetle 54.719167 -119.663611 27077397 42570 9 0 16 0 0.0 Metagenome 3300027647 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38 HiSeq DOE Joint Genome Institute (JGI) 3300027647 Metagenome Analysis spades v. 3.11.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9888 -108.3994 370782064 840253 362 18 684 24 SRX5783415, SRX5783416 Unrestricted 0.0 Metagenome 3300060646 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Healy, Denali National Park, Alaska, USA - HEAL_048-M-20210622-comp-1 DOE Joint Genome Institute (JGI) 3300060646 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Terrestrial soil 63.875088 -149.210438 853472039 1501350 245 23 452 23 Unrestricted 15.83 Metagenome 3300013464 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100313 University of Pennsylvania 3300013464 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 11536690 26870 18 0 24 0 SRX756588 0.0 Metagenome 3300041861 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_45 MetaG AgResearch, New Zealand, Mosgeil 3300041861 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 830965190 1707908 271 27 841 43 0.0 Metagenome 3300045740 *Microbiome Permanent Draft Sediment microbial communities from various rivers and their estuaries in the United States Sediment microbial communities from Altamaha River, Georgia, United States - BTRS19_Sengupta_8F DOE Joint Genome Institute (JGI) 3300045740 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sg.aditi@gmail.com Aditi Sengupta No Environmental Aquatic River Freshwater Sediment sediment 31.3776 -81.4925 729434536 1283326 367 37 689 66 Unrestricted 15.21 Metagenome 3300036867 *Microbiome Permanent Draft Soil microbial communities from a coastal freshwater wetland in North Carolina, United States Soil microbial communities from coastal freshwater wetland in North Carolina, United States - 9Pre DOE Joint Genome Institute (JGI) 3300036867 Metagenome Analysis metaspades v. 3.13.0 Yes Yes peraltaa@ecu.edu Ariane Peralta No Environmental Terrestrial Wetlands Soil Unclassified soil 35.8956 -76.1655 598552942 1008063 225 9 442 8 SRX8387714 Unrestricted 13.07 Metagenome 3300061652 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0113 Microbiome Insights 3300061652 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 589322774 820425 131 2 231 4 0.0 Metagenome 3300042364 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME19Sep2015-rr0798 DOE Joint Genome Institute (JGI) 3300042364 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 753484903 1169636 356 73 480 114 Unrestricted 13.42 Metagenome 3300030745 *Microbiome Permanent Draft Wheat crown rot disease influences the structure and diversity of wheat-associated microbiome Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 University of Western Sydney 3300030745 Metagenome Analysis MEGAHIT v. 1.0 released by JGI data releasing policy No Yes h.liu2@westernsydney.edu.au hongwei liu No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soils -27.565194 151.864444 251937677 590524 293 21 639 30 0.0 Metagenome 3300002512 *Microbiome Permanent Draft Pimephales promelas gut microbial communities from the University of Colorado, Denver, USA, during Triclosan exposure experiment Gut microbiomes of Pimephales promelas (fathead minnow) during Triclosan exposure experiment - D0C9- baseline 3300002512 Metagenome Analysis idba_ud released by JGI data releasing policy No Yes christopher.s.miller@ucdenver.edu Christopher Miller, Christopher S. Miller No Host-associated Fish Intestine Digestive system Unclassified Pimephales promelas gut 39.7392 -104.9847 433495259 787819 25 8 49 8 0.0 Metagenome 3300031914 *Microbiome Permanent Draft Antarctic Nanohaloarchaea Enriched hypersaline water microbial communities from Club Lake, Antarctica - Round 2 flow cytometry Nha-CFC University of Queensland 3300031914 Metagenome Analysis Spades v. 3.12.0 Released by Simon per user request. Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli Yes 31253704 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline water -68.5417 78.2467 34916470 46852 19 1 17 0 0.0 Metagenome 7000000100 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 765135172 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000100 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 111425065 183712 0 0 0 0 0.0 Metagenome 3300027109 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes) DOE Joint Genome Institute (JGI) 3300027109 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 155019271 375147 67 1 144 3 SRX2014329 Unrestricted 0.0 Metagenome 3300070467 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_002-M-20200706-COMP-DNA1 3300070467 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 10231014 32975 36 6 72 12 0.0 Metagenome 3300032166 *Microbiome Finished Wastewater microbial communities from sewage in Mossoro, RN, Brazil Wastewater microbial communities from sewage in Mossoro, RN, Brazil - WS1 Federal University of Rio Grande do Norte 3300032166 Metagenome Analysis Geneious v. 10.2.3 released by JGI data releasing policy No Yes lfagnez@ufrnet.br Lucymara Agnez-Lima No Engineered Wastewater Unclassified Sewage Unclassified wastewater -5.1904 -37.3444 715261577 2658001 3173 122 6260 245 0.0 Metagenome 3300044234 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T96 S DOE Joint Genome Institute (JGI) 3300044234 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7813 -64.3765 214911752 545229 29 3 24 7 Unrestricted 53.8 Metagenome 3300005514 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV263 DOE Joint Genome Institute (JGI) 3300005514 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 721404359 1870558 785 12 1268 18 SRX2782447 Unrestricted 0.0 Metagenome 3300009444 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3 DOE Joint Genome Institute (JGI) 3300009444 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes rstepanauskas@bigelow.org, rstepanauskas@bigelow.org; duane.moser@dri.edu Ramunas Stepanauskas, Ramunas Stepanauskas; Duane Moser No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Thermal springs 36.96 -116.72 1399036475 2788045 1001 19 1664 38 SRX2948734 Unrestricted 0.0 Metagenome 3300047579 *Microbiome Permanent Draft Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA - 3_s_sep_JRB_CZO DOE Joint Genome Institute (JGI) 3300047579 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dawsonfairbanks@email.arizona.edu Dawson Fairbanks No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.882743 -105.537439 329905398 589525 181 9 297 10 Unrestricted 17.49 Metagenome 3300070489 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_004-M-20180717-COMP-DNA1 Battelle Memorial Institute 3300070489 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 38.896938 -78.146458 5.14-6.48 4980894 16576 55 2 86 4 0.0 Metagenome 3300001118 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP1091 DOE Joint Genome Institute (JGI) 3300001118 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -29.81 82.62 11421185 33094 34 12 60 18 SRX1982598 Unrestricted 0.0 Metagenome 3300047441 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 soil DOE Joint Genome Institute (JGI) 3300047441 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.588286 -123.194027 6.72 239144379 449587 227 10 449 14 Unrestricted 23.41 Metagenome 3300028792 *Microbiome Permanent Draft Soil and ectomycorrhiza microbial communities from Populus trichocarpa stands in riparian zones in the Pacific Northwest, United States Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S DOE Joint Genome Institute (JGI) 3300028792 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Environmental Terrestrial Riparian zone Soil Trees stand soil 47.5302 -121.825 1225131304 3440407 786 16 1410 45 SRX5650592 Unrestricted 8.74 Metagenome 3300048582 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Sediment microbial communities from freshwater Prado Wetlands in Corona, California, USA - ZJ_Prado_4 DOE Joint Genome Institute (JGI) 3300048582 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Wetlands Freshwater Sediment Sediment 33.919031 -117.617686 993875767 1650435 415 207 630 321 Unrestricted 25.87 Metagenome 3300044561 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TSR8 DOE Joint Genome Institute (JGI) 3300044561 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.414 47410784 62732 61 5 52 5 SRX12670963 Unrestricted 231.82 Metagenome 3300008750 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 159005010 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008750 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 98564025 116189 73 0 101 0 0.0 Metagenome 3300033080 *Microbiome Permanent Draft Mercury Periphyton Project Periphyton microbial communities from the St. Maurice River, Quebec, Canada - S1.E1 Genome Quebec 3300033080 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Periphyton Freshwater periphyton 47.885464 -73.754885 603680438 926984 370 190 663 332 0.0 Metagenome 3300003228 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-C DOE Joint Genome Institute (JGI) 3300003228 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 7907971 16628 18 5 31 11 SRX2575558 Unrestricted 0.0 Metagenome 3300036889 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 30-34 DOE Joint Genome Institute (JGI) 3300036889 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 501446031 800474 167 3 272 8 SRX8138153 Unrestricted 24.42 Metagenome 3300025286 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025286 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 38.09 11.46 354998198 741500 142 0 168 0 SRX2753799 Unrestricted 0.0 Metagenome 3300035038 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B3.6_Sample3.Rodeo6.Well667 DOE Joint Genome Institute (JGI) 3300035038 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 99252794 152270 127 0 160 0 SRX8353224 Unrestricted 87.37 Metagenome 7000000084 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 158256496 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000084 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 59614252 119634 0 0 0 0 0.0 Metagenome 3300055517 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.2W.10 SIP fraction DOE Joint Genome Institute (JGI) 3300055517 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 239821070 439974 281 37 460 65 Unrestricted 16.01 Metagenome 3300003908 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_125SG_5_DNA DOE Joint Genome Institute (JGI) 3300003908 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 139098558 325328 257 84 363 134 Unrestricted 0.0 Metagenome 3300059447 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.5C.9 SIP fraction DOE Joint Genome Institute (JGI) 3300059447 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 153267011 260333 192 2 287 8 Unrestricted 0.0 Metagenome 3300001165 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_O3 DOE Joint Genome Institute (JGI) 3300001165 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 2102383 4986 80 37 135 48 SRX3311918 Unrestricted 0.0 Metagenome 3300053671 *Microbiome Permanent Draft Soil microbial communities from various environments and locations in the USA Soil microbial communities from farm land in Prosser, Washington, USA - PRS2_BTM DOE Joint Genome Institute (JGI) 3300053671 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nancy.hess@pnnl.gov Nancy Hess No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.2517 -119.7288 4185648213 6799923 1332 13 2237 19 Unrestricted 21.38 Metagenome 7000000587 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 159369152 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000587 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 55282608 75655 0 0 0 0 0.0 Metagenome 3300009308 *Microbiome Permanent Draft Anaerobic oil degrading microbial communities from River Tyne estuarine sediment Microbial communities from sediment of the River Tyne Estuary, UK - Pasteurized_686d_3 SPAdes University of Liverpool 3300009308 Metagenome Analysis SPAdes released per JGI data release policy No Yes ian.head@ncl.ac.uk, ian.head@ncl.ac.uk; ana.suarez-suarez@ncl.ac.uk Ian Head, Ian Head; Ana Suarez-Suarez No Environmental Aquatic Unclassified Sediment Unclassified sediment 54.9632021 -1.6348029 265860313 530766 156 4 273 2 0.0 Metagenome 3300028867 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_3 DOE Joint Genome Institute (JGI) 3300028867 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 849475044 1840278 258 28 383 33 SRX5799164 Unrestricted 0.0 Metagenome 3300028141 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_17JUL2017_LD1 DOE Joint Genome Institute (JGI) 3300028141 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 41362284 80151 13 37 10 48 SRX5345822 Unrestricted 24.3 Metagenome 3300045048 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - DOSP12-9-18-19 DOE Joint Genome Institute (JGI) 3300045048 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.0327 -120.69 266502064 722998 432 28 761 52 Restricted 7.67 Metagenome 3300040229 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_002-M-20160719-COMP-DNA1 Battelle Memorial Institute 3300040229 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 7984890 25095 65 4 110 9 0.0 Metagenome 3300011505 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00663 Weill Cornell Medical College 3300011505 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.82 -73.93 19296712 29427 15 0 17 0 SRX822630 0.0 Metagenome 3300012950 *Microbiome Permanent Draft Marine microbial communities from the Costa Rica Dome and surrounding waters Marine microbial communities from the Central Pacific Ocean - Fk160115 155m metaG DOE Joint Genome Institute (JGI) 3300012950 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes msaito@whoi.edu Mak Saito No Environmental Aquatic Oceanic Marine Photic zone seawater 10.0 -145.0 1876857086 4081618 1568 111 2852 194 SRX3375199 Unrestricted 12.37 Metagenome 3300055014 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_160831.NP2 DOE Joint Genome Institute (JGI) 3300055014 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 1129675409 2425649 686 173 1062 294 Restricted 0.0 Metagenome 3300048615 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT_PTT1_OCT19_90cm DOE Joint Genome Institute (JGI) 3300048615 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9883 -108.4003 322923113 687084 425 1 785 1 Restricted 10.66 Metagenome 3300025855 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC048_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025855 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu; twoyke@lbl.gov Wen-Tso Liu; Masaru Nobu; Tanja Woyke No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 41.12 -87.64 776361435 1431691 524 5 806 12 SRX2165335 Unrestricted 0.0 Metagenome 3300037431 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - WH_050217 DOE Joint Genome Institute (JGI) 3300037431 Metagenome Analysis metaspades v. 3.13.0 Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.8725 -89.3578 321875089 860829 411 24 729 48 SRX9381782 Unrestricted 7.15 Metagenome 3300034111 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186 DOE Joint Genome Institute (JGI) 3300034111 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1153633209 2288559 593 142 849 230 SRX7622349 Unrestricted 12.81 Metagenome 3300045968 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P35SSC1_190914_i DOE Joint Genome Institute (JGI) 3300045968 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 924228444 1416000 302 1 474 0 SRX20650188 Unrestricted 12.08 Metagenome 3300049906 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume viral communities from North Pacific Ocean - CTD010 v DOE Joint Genome Institute (JGI) 3300049906 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 9.840142 -104.2918 38126505 78259 17 2 24 6 Restricted 831.06 Metagenome 3300008058 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 159510762 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008058 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 111563152 128541 91 0 134 0 0.0 Metagenome 3300042649 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Procubitermes c.f. undulans from Ebogo II, Mbalmayo, Cameroon - Pcu381 Eurofins MWG Operon 3300042649 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 3.381958 11.463214 276242635 290131 98 20 152 57 0.0 Metagenome 3300042516 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Aug2006D7-rr0586 DOE Joint Genome Institute (JGI) 3300042516 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1148098848 1840915 319 39 458 54 Unrestricted 19.01 Metagenome 3300038410 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Sediment microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_East_4 DOE Joint Genome Institute (JGI) 3300038410 Metagenome Analysis metaspades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Wetlands Marine Sediment sediment 26.502 -80.2225 1529766500 2374876 557 8 942 12 SRX9406148 Unrestricted 12.77 Metagenome 3300011446 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Human oral microbial communities from various locations - University of British Columbia - SCG36 University of British Columbia 3300011446 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Unclassified Human oral 1339345 3581 4 0 5 0 SRX143145 0.0 Metagenome 3300036792 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in New South Wales, Australia - Pe_1 DOE Joint Genome Institute (JGI) 3300036792 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil -33.6 150.0 1875300945 3005200 487 66 758 112 SRX8385006 Unrestricted 16.21 Metagenome 3300034422 *Microbiome Permanent Draft Ice-wedge Polygon SIP Study Soil microbial communities from ice wedge polygon in Axel Heiberg Island, Nunavut, Canada - Rep_2 Biotechnology Research Institute, National Research Council of Canada 3300034422 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy No Yes ianina.altshuler@mail.mcgill.ca Ianina Altshuler No Environmental Terrestrial Soil crust Soil Unclassified ice-wedge polygon soil 79.4 -90.7 430059811 1116258 281 7 532 16 0.0 Metagenome 3300049226 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_181205.NP2 DOE Joint Genome Institute (JGI) 3300049226 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 513503607 1151571 395 24 679 31 Unrestricted 10.95 Metagenome 3300024440 *Microbiome Permanent Draft Vaginal microbial communities from lab mice Vaginal microbial communities from lab mice with HSV-2 infection, Madrid, Spain - G2-S16 treatment D2, day 20 Polytechnic University of Valencia 3300024440 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Vagina Reproductive system Unclassified mice vagina 40.4191094 -3.6725753 757712 1188 0 0 0 0 0.0 Metagenome 7000000569 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 764588959 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000569 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 1327914 1275 0 0 0 0 SRX024052 0.0 Metagenome 3300040735 *Microbiome Permanent Draft Metagenomes of anaerobic enrichment cultures that dechlorinate hexachlorocyclohexane isomers Lab-enriched soil microbial communities from a contaminated agricultural site, Guadeloupe, France - DeltaHCH MSP Beijing Genomics Institute (BGI) 3300040735 Metagenome Analysis spades v. 3.12.0 Yes Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Environmental Terrestrial Unclassified Soil Contaminated soil 16.249 -61.565 311713114 667100 87 0 253 0 0.0 Metagenome 3300027560 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027560 Metagenome Analysis spades v. 3.11.1 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 267553811 732813 344 10 714 12 SRX2521131 Unrestricted 0.0 Metagenome 3300017903 *Microbiome Permanent Draft Marine microbial communities from Caribbean coral reef seawater Marine microbial communities from Caribbean coral reef seawater, Cuba - site D University of Illinois, Urbana-Champaign 3300017903 Metagenome Analysis MEGAHIT v1.1.1-2-g02102e1 released by JGI data releasing policy No Yes lweber@whoi.edu Laura Weber No Environmental Aquatic Intertidal zone Marine Coral reef seawater 20.877649 -78.970284 339338845 474925 101 14 122 23 0.0 Metagenome 3300069580 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Environmental Research Center, Mid-Atlantic, MD, USA - SERC_001-M-20170710-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069580 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89008 -76.56001 3454323 11046 19 7 45 15 0.0 Metagenome 3300070502 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Environmental Research Center, Maryland, USA - SERC_003-M-20170711-COMP-DNA1 Battelle Memorial Institute 3300070502 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 38.899872 -76.543752 5.66-5.87 1642981 5428 23 3 38 2 0.0 Metagenome 3300028889 *Microbiome Permanent Draft Soil microbial communities from agricultural site in Penn Yan, New York, United States Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2 DOE Joint Genome Institute (JGI) 3300028889 Metagenome Analysis spades v. 3.11.1 Yes Yes dbuckley@cornell.edu Dan Buckley No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.673 -77.032 3014561381 8204650 1942 84 3487 172 SRX5338663 Unrestricted 14.58 Metagenome 3300028214 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS377 with 0.8UM filter - spades JGI facility at Oak Ridge National Laboratory 3300028214 Metagenome Analysis Spades v. 3.11.1 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 19638791 39233 10 0 14 0 0.0 Metagenome 3300005366 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG DOE Joint Genome Institute (JGI) 3300005366 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 4971494703 13535166 3865 207 6665 404 SRX2740085 Unrestricted 0.0 Metagenome 7000000355 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 764649650 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000355 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2139884 2367 0 0 0 0 0.0 Metagenome 3300003423 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from above oceans and continental USA - SEAC4RS-RF6-003 DOE Joint Genome Institute (JGI) 3300003423 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 1795335 5948 33 4 13 8 Unrestricted 0.0 Metagenome 3300027872 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Amundsen Gulf, Northwest Territories, Canada - Cases_109_9 DOE Joint Genome Institute (JGI) 3300027872 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Gulf Marine Unclassified seawater 70.66 -123.0 1435851358 3442810 889 7 1536 13 SRX5244059 Unrestricted 10.26 Metagenome 3300046131 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Leaf microbial communities from farm grass in Deerfield, Massachusetts, United States - Orchardgrass_Phyllosphere_Drought1 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300046131 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 42.4788 -72.5788 4600901380 7874122 623 601 992 917 Restricted 37.58 Metagenome 3300028033 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_2015_12_15 DOE Joint Genome Institute (JGI) 3300028033 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified deep subsurface sediment 39.6017 -79.9761 34407386 43997 55 0 73 0 SRX5246440 Unrestricted 430.15 Metagenome 3300020499 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 14SEP2009 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020499 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 77601148 168898 105 34 180 49 SRX1988271 Unrestricted 0.0 Metagenome 3300037838 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI151_2019_mar_100m DOE Joint Genome Institute (JGI) 3300037838 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 387091161 809639 305 45 461 91 SRX9402729 Unrestricted 12.49 Metagenome 3300000157 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 1000m DOE Joint Genome Institute (JGI) 3300000157 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 48.35 -123.3 112500286 266228 82 37 163 56 Unrestricted 0.0 Metagenome 3300057031 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F1P_0_1 DOE Joint Genome Institute (JGI) 3300057031 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9544076 -81.67361068 1803718111 2814043 634 3 1034 6 Unrestricted 12.17 Metagenome 3300019700 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLC_2-3_MG DOE Joint Genome Institute (JGI) 3300019700 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 97918962 243019 203 10 407 26 Unrestricted 3.56 Metagenome 3300025210 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP1092 (SPAdes) DOE Joint Genome Institute (JGI) 3300025210 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -29.81 82.62 98233063 209393 121 6 209 13 SRX1982591 Unrestricted 0.0 Metagenome 3300017675 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - W13-13 University of Michigan 3300017675 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.39757 -85.38536 40274596 51592 16 0 17 0 0.0 Metagenome 3300044526 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - III_P72_A001 DOE Joint Genome Institute (JGI) 3300044526 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Pasture Soil Agricultural land Soil -10.2051 -62.7743 1033329591 2770992 751 6 1410 7 Unrestricted 7.6 Metagenome 3300038734 *Microbiome Finished Marine microbial communities from Northern Baffin Bay, Arctic Ocean Marine microbial communities from Northern Baffin Bay, Arctic Ocean - scm_36m_st101_2017 CEA Genoscope 3300038734 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy Yes Yes nastasia.freyria.1@ulaval.ca Nastasia Freyria No Environmental Aquatic Oceanic Marine Photic zone marine 76.23 -77.24 1813333605 5208688 1562 636 2162 1071 0.0 Metagenome 3300006179 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C virus_MetaG DOE Joint Genome Institute (JGI) 3300006179 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes binskeep@montana.edu William Inskeep, William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.7219 -110.7021 57621932 147320 38 0 43 0 SRX2917369 Unrestricted 0.0 Metagenome 3300026486 *Microbiome Permanent Draft Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PR6 DOE Joint Genome Institute (JGI) 3300026486 Metagenome Analysis spades v. 3.11.1 Yes Yes ccraft@indiana.edu Chris Craft No Environmental Aquatic Wetlands Freshwater Sediment sediment 31.3377 -81.4644 191232588 504108 409 4 732 10 SRX4796700 Unrestricted 6.84 Metagenome 3300049037 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - E5_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049037 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 267193365 603803 452 20 890 39 Unrestricted 0.0 Metagenome 3300009709 *Microbiome Permanent Draft Host-associated microbial communities from peat moss Sphagnum species from Minnesota, USA Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG DOE Joint Genome Institute (JGI) 3300009709 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes joel.kostka@biology.gatech.edu Joel Kostka No Host-associated Plants Unclassified Peat moss Unclassified Host-associated 47.5028 -93.4828 2391001387 3996043 1334 385 1975 608 SRX3006919 Unrestricted 0.0 Metagenome 3300035414 *Microbiome Permanent Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Eunicella gazella from Algarve, Portugal - EG15H Euk Molecular Research LP (MR DNA) 3300035414 Metagenome Analysis Metawrap workflow v. 1.0.5 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 8.1 4144807 3341 1 1 0 1 0.0 Metagenome 3300046806 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Columbia River, Richland, Washington, USA - columbiariver2_2019_sw_WHONDRS-S19S_0076 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300046806 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 46.6793 -119.4626 324564488 538749 192 75 285 96 Unrestricted 0.0 Metagenome 3300028999 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 341_4M Beijing Genomics Institute (BGI) 3300028999 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 50636536 54462 27 0 37 0 ERX491092 0.0 Metagenome 3300050154 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D10_SEK1_4_to_SEK1 DOE Joint Genome Institute (JGI) 3300050154 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.244 573586767 959319 328 94 536 152 Unrestricted 17.52 Metagenome 3300041826 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - A_36_wk_5 DOE Joint Genome Institute (JGI) 3300041826 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9841 -106.97 109242328 329652 226 12 377 24 SRX14809835 Unrestricted 6.82 Metagenome 3300027384 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S3_30_40 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027384 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen Yes 29920461 Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228508 -119.2716818 196443967 487911 187 1 305 2 SRX2523204 Unrestricted 0.0 Metagenome 3300012654 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100659 University of Pennsylvania 3300012654 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 32516391 70768 23 0 35 0 SRX756435 0.0 Metagenome 3300000706 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 65 DOE Joint Genome Institute (JGI) 3300000706 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 10918613 32179 51 0 76 1 SRX4341313 Unrestricted 0.0 Metagenome 3300042756 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_4-Nov-14 NMDC pilot DOE Joint Genome Institute (JGI) 3300042756 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 254199720 628931 600 121 1125 191 SRX2838984 0.0 Metagenome 3300069364 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_031-M-20170802-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069364 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 73026533 223239 166 7 315 11 0.0 Metagenome 3300033389 *Microbiome Permanent Draft Metagenomic SGS 2x251 Riparian soil bacterial communities from Cottonwood Creek Park, Encinitas, CA, USA - R4 Illumina 3300033389 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Riparian soil Soil 33.051604 -117.289363 279913561 1027467 184 26 444 25 0.0 Metagenome 3300025699 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025699 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 554119408 970460 253 40 391 76 SRX2999917 Unrestricted 0.0 Metagenome 3300046043 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Missouri River, Missouri, USA - NASQAN2011_401 DOE Joint Genome Institute (JGI) 3300046043 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.7098 -91.4385 75703473 204621 174 62 353 94 Unrestricted 0.0 Metagenome 3300009935 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R11 University of New South Wales 3300009935 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 104181696 174172 73 1 94 2 0.0 Metagenome 3300029496 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001841-89 Beijing Genomics Institute (BGI) 3300029496 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 148929951 202779 135 0 186 0 0.0 Metagenome 3300039053 *Microbiome Permanent Draft Coastal seawater microbial communities from Massachusetts, USA Coastal seawater microbial communities from Nahant, Massachusetts, USA - M2.T140 Massachusetts Institute of Technology 3300039053 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Coastal seawater 42.0 -70.0 9534844 14724 16 1 21 1 0.0 Metagenome 3300070397 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_035-O-20190718-COMP-DNA1 3300070397 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 21096804 67030 98 15 183 39 0.0 Metagenome 3300044668 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3E2 DOE Joint Genome Institute (JGI) 3300044668 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Unclassified Roots Unclassified Root 14.75 -16.85 887433091 1327039 14 20 37 57 Unrestricted 25.37 Metagenome 3300029754 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 041_10_29_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029754 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 157545345 208595 174 0 204 0 0.0 Metagenome 3300020060 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - U2c2 DOE Joint Genome Institute (JGI) 3300020060 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9365 -106.9428 466415662 875264 223 23 441 31 SRX3948141, SRX3948142 Unrestricted 0.0 Metagenome 3300030202 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_066 - TARA_R100000900 CEA Genoscope 3300030202 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -34.9449 17.9189 238048445 463128 50 0 52 0 0.0 Metagenome 3300039761 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Ozarks Complex, AL, USA - LENO_003-M-20160829-COMP-DNA1 Battelle Memorial Institute 3300039761 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.85388 -88.16122 42428698 114446 95 6 168 6 0.0 Metagenome 3300029321 *Microbiome Permanent Draft Human fecal microbial communities from healthy and liver cirrhosis patients in Hangzhou, China Human fecal microbial communities from healthy subjects in Hangzhou, China - HD-7_Run1 Zhejiang University 3300029321 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 30.0 120.0 92843791 121959 87 0 114 0 0.0 Metagenome 3300042273 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA MBR feed microbial communities from membrane bioreactor in Denver, Colorado, USA - FD_D185_2 DOE Joint Genome Institute (JGI) 3300042273 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Wastewater Mine water Industrial wastewater Produced water MBR feed 39.7823 -104.9101 679329131 995230 461 5 687 8 Unrestricted 21.29 Metagenome 3300003597 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Archaeal communities from Yellowstone National Park, Wyoming, USA - Archaeal consortia 1 (NAG2) MetaG DOE Joint Genome Institute (JGI) 3300003597 Metagenome Analysis Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Unclassified Thermal springs Unclassified Thermal springs 44.376 -110.69 8232657 10354 3 0 3 0 SRX2577304 Unrestricted 0.0 Metagenome 3300041799 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - C_37_wk_3 DOE Joint Genome Institute (JGI) 3300041799 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9949 -107.07 224291366 618007 286 21 560 46 SRX14808388 Unrestricted 7.24 Metagenome 3300021589 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-13-14_MG DOE Joint Genome Institute (JGI) 3300021589 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.0114 -110.5956 44940317 121160 79 0 137 1 SRX3982313 Unrestricted 50.12 Metagenome 3300045492 *Microbiome Permanent Draft Florida Reef Tract Coral Disease Outbreak Coral surface microbial communities from Montastraea cavernosa, offshore reef, Ft. Lauderdale, FL, USA - McEH -2 University of Florida 3300045492 Metagenome Analysis MEGAHIT v. 1.1.4 released per PI No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified coral surface 26.16 -80.1 29279317 44295 3 0 4 2 0.0 Metagenome 3300027653 *Microbiome Permanent Draft Agricultural soil microbial communities from Utah and Georgia to study Nitrogen management Agricultural soil microbial communities from Georgia to study Nitrogen management - Poultry litter 2012 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027653 Metagenome Analysis spades v. 3.11.1 Yes Yes jeanette.norton@usu.edu Jeanette Norton No Environmental Terrestrial Agricultural land Soil Unclassified Agricultural soil 33.8834 -83.4195 542634336 853997 627 16 744 18 SRX2924376 Unrestricted 0.0 Metagenome 3300044615 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME16Aug2018-rr0976 DOE Joint Genome Institute (JGI) 3300044615 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1308374120 1918204 525 92 634 144 Unrestricted 14.46 Metagenome 3300009072 *Microbiome Permanent Draft Genome and metagenome analysis of marine red algae Porphyra Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male1 metaG DOE Joint Genome Institute (JGI) 3300009072 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes brawley@maine.edu, Brawley@maine.edu Susan Brawley No Host-associated Algae Unclassified Red algae Unclassified Marine 50.677 -3.24 286092125 594642 2271 22 4141 29 SRX2999535 Unrestricted 0.0 Metagenome 3300021567 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-13-14_MG DOE Joint Genome Institute (JGI) 3300021567 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.0114 -110.5956 20745460 62316 49 0 92 1 SRX3982296 Unrestricted 55.84 Metagenome 3300010331 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - ?SSSS metaG DOE Joint Genome Institute (JGI) 3300010331 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca Ramunas Stepanauskas; Peter Dunfield No Environmental Aquatic Ice Freshwater Glacier Glacier valley 81.017 -81.583 1203901989 2282475 1156 63 1824 115 SRX2525376 Unrestricted 0.0 Metagenome 3300034410 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Seawater microbial communities from Algarve, Portugal - SW02 Molecular Research LP (MR DNA) 3300034410 Metagenome Analysis Metawrap workflow v. 1.0.8 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Environmental Aquatic Oceanic Marine Unclassified seawater 36.979778 -7.989111 58928023 76999 20 2 31 4 0.0 Metagenome 3300040692 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_004-O-5-35-20130709-GEN-DNA1 Argonne National Laboratory 3300040692 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 1019208 3178 36 13 64 14 ERX2134040 0.0 Metagenome 3300038303 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI151_2019_mar_120m DOE Joint Genome Institute (JGI) 3300038303 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 244702964 503487 171 13 280 32 SRX9402725 Unrestricted 13.19 Metagenome 3300004058 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1 DOE Joint Genome Institute (JGI) 3300004058 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.000637 -121.624207 615862954 2092290 731 8 1575 19 SRX7143250 Unrestricted 0.0 Metagenome 3300037130 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPN1-1-D DOE Joint Genome Institute (JGI) 3300037130 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3569 19.0502 401226055 643982 128 8 191 12 SRX8861425 Unrestricted 27.09 Metagenome 3300001886 *Microbiome Permanent Draft Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils (2) Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils - Sample15 3300001886 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Terrestrial Unclassified Soil Grasslands Grassland soil 23.850674 69.734802 0 0 0 0 0 0 0.0 Metagenome 3300003078 *Microbiome Permanent Draft Hot spring microbial communities from Five Geothermal Springs in Yellowstone National Park, USA Hot spring microbial communities from Five Geothermal Springs in Yellowstone National Park, USA - Crater Hills, Alice Spring J. Craig Venter Institute 3300003078 Metagenome Analysis Made public because these are downloaded from Genbank No Yes Rusch, D No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.653363 -110.477667 2.5 1931913 2573 2 0 2 0 0.0 Metagenome 3300038422 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Sediment microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_North_5 DOE Joint Genome Institute (JGI) 3300038422 Metagenome Analysis metaspades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Wetlands Marine Sediment sediment 26.6774 -80.3753 1161354362 1874517 589 9 978 12 SRX9406144 Unrestricted 12.87 Metagenome 3300034734 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Leptogorgia sarmentosa from Algarve, Portugal - LS07H Molecular Research LP (MR DNA) 3300034734 Metagenome Analysis Metawrap workflow v. 1.0.8 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 58946905 65694 3 1 7 4 0.0 Metagenome 3300048526 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_59 DOE Joint Genome Institute (JGI) 3300048526 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9223 -106.9493 76538347 202071 251 14 523 15 Restricted 0.0 Metagenome 3300023046 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS DOE Joint Genome Institute (JGI) 3300023046 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.282 -123.2869 110246610 263134 155 38 272 57 SRX4393148 Unrestricted 9.29 Metagenome 3300022904 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L166-409R-6 DOE Joint Genome Institute (JGI) 3300022904 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 403273191 889582 512 78 941 144 SRX4801084 Unrestricted 7.87 Metagenome 3300032420 *Microbiome Permanent Draft Freshwater microbial communities from lake liftoff mats and glacier meltwater in Antarctica Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-04 (spades assembly) (version 2) DOE Joint Genome Institute (JGI) 3300032420 Metagenome Analysis spades v. 3.13.0 Yes Yes slonczewski@kenyon.edu Joan Slonczewski No Environmental Aquatic Ice Freshwater Liftoff microbial mat Freshwater -77.605 163.163 2271122544 4054828 937 44 1366 68 SRX2522268 Unrestricted 22.37 Metagenome 3300022442 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1OPP1 JM73 AGRF 3300022442 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 60942325 105174 47 0 74 0 0.0 Metagenome 3300010280 *Microbiome Permanent Draft Animal gut microbial communities from fecal samples from Wisconsin, USA Ring-tailed lemur group fecal microbial communities from Wisconsin, USA - L827 metagenome DOE Joint Genome Institute (JGI) 3300010280 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes apneumann2@wisc.edu Anthony Neumann No Host-associated Mammals Large intestine Digestive system Fecal Ring-tailed lemur group fecal 43.07 -89.4 294047809 431425 630 0 838 0 SRX2505950 Unrestricted 0.0 Metagenome 3300029514 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI003283-119 Beijing Genomics Institute (BGI) 3300029514 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 158164344 201912 134 0 178 0 0.0 Metagenome 3300050264 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_18 DOE Joint Genome Institute (JGI) 3300050264 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.875 160.739 302403353 443963 55 14 79 30 SRX18235886 Restricted 34.06 Metagenome 3300025444 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_10_40 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025444 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 204133067 377357 81 0 134 1 SRX3003283 Unrestricted 0.0 Metagenome 3300006296 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 160380657 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006296 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 50056068 63960 53 0 75 1 0.0 Metagenome 3300035375 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada -18E_3a_9_7 mgh University of Alberta 3300035375 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified wastewater 56.7292 -111.3885 42437182 57604 29 0 50 2 0.0 Metagenome 3300025902 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC032_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025902 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.3 -88.15 498466237 935391 417 2 645 5 SRX2338801 Unrestricted 0.0 Metagenome 3300059453 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.18W.14 SIP fraction DOE Joint Genome Institute (JGI) 3300059453 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 157094509 295723 81 54 149 82 Unrestricted 0.0 Metagenome 3300022224 *Microbiome Finished Lab enrichment of drill cuttings microbial communities from oil reservoir in Mossoro region, Brazil - 43 Lab enrichment of drill cuttings microbial communities from oil reservoir in Mossoro region, Brazil - 43 Federal University of Rio Grande do Norte 3300022224 Metagenome Analysis Geneious 9.1.2 released by JGI data releasing policy No Yes lfagnez@ufrnet.br Lucymara Agnez-Lima No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil reservoir sediment -5.1841 -37.3478 1157154724 5005500 16681 1 33542 9 0.0 Metagenome 3300040245 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Mountain Lake Biological Station, Appalachians & Cumberland Plateau, VA, USA - MLBS_001-M-20180611-COMP-DNA1 Battelle Memorial Institute 3300040245 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.37828 -80.52484 7099593 20831 46 1 74 0 0.0 Metagenome 3300028602 *Microbiome Permanent Draft Leachate and groundwater microbial communities from a municipal landfill and adjacent aquifer in Southern Ontario, Canada Groundwater microbial communities from a municipal landfill in Southern Ontario, Canada - Pumphouse #3 DOE Joint Genome Institute (JGI) 3300028602 Metagenome Analysis spades v. 3.11.1 Yes Yes laura.hug@uwaterloo.ca Laura Hug No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 43.442 -80.577 1720483498 3252495 1918 2 2923 4 SRX5256785 Unrestricted 16.65 Metagenome 3300000289 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM283 Beijing Genomics Institute (BGI), Macrogen 3300000289 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 118765155 224949 541 2 788 1 0.0 Metagenome 3300025222 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP2253 (SPAdes) DOE Joint Genome Institute (JGI) 3300025222 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 10.09 -99.25 97887556 206558 105 5 168 4 SRX1981968 Unrestricted 0.0 Metagenome 3300035240 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2012_2000m DOE Joint Genome Institute (JGI) 3300035240 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 50.0 -145.0 427357203 1004455 355 37 556 55 SRX8219588 Unrestricted 14.82 Metagenome 3300001996 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot19-2 3300001996 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 1565406 9204 26 0 85 1 0.0 Metagenome 3300021435 *Microbiome Permanent Draft Filtered air microbial and viral communities from Madrid, Spain Filtered air microbial and viral communities from Madrid, Spain - sample V Autonomous University of Barcelona 3300021435 Metagenome Analysis SPAdes 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Air Unclassified Outdoor Air Unclassified filtered air 40.4 -3.7 82528153 182990 77 78 152 105 0.0 Metagenome 3300046714 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 soil DOE Joint Genome Institute (JGI) 3300046714 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.120986 -123.26911 5.82 958884215 1588329 348 12 593 18 Unrestricted 12.35 Metagenome 3300069478 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_015-O-20160830-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069478 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 8682206 26804 35 17 69 25 0.0 Metagenome 3300037352 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 P3 20-24 DOE Joint Genome Institute (JGI) 3300037352 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0472 707689770 1284140 223 16 380 18 SRX10079147 Unrestricted 10.02 Metagenome 3300016471 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water reservoir in Singapore - WB_Site 5b, Aug Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016471 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Lake Freshwater Unclassified freshwater 1.35 103.87 130289502 162610 32 5 41 3 0.0 Metagenome 3300013972 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - seawater enrichment SCG46 University of British Columbia 3300013972 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 1585636 3529 2 0 4 0 SRX143155 0.0 Metagenome 3300013394 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100171 University of Pennsylvania 3300013394 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 1111460 2958 1 1 4 1 SRX756362 0.0 Metagenome 3300024999 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado, USA - Groundwater D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300024999 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 26083755 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.55 -107.97 187622426 356390 151 2 259 1 SRX764828, SRX1668357 Unrestricted 0.0 Metagenome 3300043483 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 033-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043483 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9217 -106.9535 224350107 662503 476 27 927 35 Unrestricted 7.63 Metagenome 3300014952 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS44_3 University of Hohenheim 3300014952 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 110486759 173605 54 0 108 0 0.0 Metagenome 3300042625 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Sphaerotermes sphaerothorax from Ebogo II, Mbalmayo, Cameroon - Sph363 Eurofins MWG Operon 3300042625 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 3.381958 11.463214 277607986 333782 90 14 129 20 0.0 Metagenome 3300007638 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159915365 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007638 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 172005484 252410 136 0 183 0 0.0 Metagenome 3300009855 *Microbiome Permanent Draft Wastewater microbial communities from Base Mine Lake, Ft. McMurray, Alberta, Canada - Surface, May 2015 Hot spring soil microbial communities from Dewar Creek, Kimberly, BC, Canada - 2012, Sample 2 University of Calgary 3300009855 Metagenome Analysis SPAdes Genome Assembler v.3.5.0 released per JGI data release policy No Yes dunfield.bio@gmail.com Dunfield Laboratory No Environmental Aquatic Sediment Thermal springs Unclassified hot spring soil 49.9543667 -116.5155 164428300 253256 143 0 149 0 0.0 Metagenome 3300071113 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Treehaven, Wisconsin, USA - TREE_050-M-20170710-COMP-DNA1 3300071113 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 207195922 586255 242 21 476 28 0.0 Metagenome 3300031176 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Sorghum-adapted microbial communities enriched on wild type (WT) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - WT_Day14_9 DOE Joint Genome Institute (JGI) 3300031176 Metagenome Analysis spades v. 3.12.0 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 153743962 206776 173 0 197 0 SRX5661307 Unrestricted 167.39 Metagenome 3300007154 *Microbiome Permanent Draft Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge Stylissa sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - St7is University of New South Wales 3300007154 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au, e.botte@aims.gov.au; n.webster@aims.gov.au Nicole Webster, Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Stylissa sp. (marine sponge) -0.940556 150.816667 151990538 370593 23 14 25 24 0.0 Metagenome 3300025308 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado, USA - Groundwater A2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025308 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 26083755 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.53 -107.78 1499031777 2638399 1573 6 2541 24 SRX1668053, SRX764704 Unrestricted 0.0 Metagenome 3300019372 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Xylan, Gen0, Rep 1 DOE Joint Genome Institute (JGI) 3300019372 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4148 -119.8405 258284731 572202 3225 6 5791 11 SRX3963325 Unrestricted 124.5 Metagenome 3300042871 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356 NMDC pilot DOE Joint Genome Institute (JGI) 3300042871 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92029456 -106.94875775 1065184160 2648828 643 19 1186 37 SRX5355404 0.0 Metagenome 3300020369 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000446 (ERX556016-ERR599044) CEA Genoscope 3300020369 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -20.3356 -3.2659 642809006 1533054 461 60 818 103 0.0 Metagenome 3300002083 *Microbiome Permanent Draft Saline desert soil microbial communities from Kutch, Gujarat, India Saline desert soil microbial communities from Kutch, Gujarat, India - S7 3300002083 Metagenome Analysis Released per request from Aanal Pandit - March 31 2014 No Yes ggi_gsbtm@yahoo.com Snehal Bagatharia No Environmental Terrestrial Unclassified Soil Desert Saline desert soil 23.940444 70.187889 0 0 0 0 0 0 0.0 Metagenome 3300049282 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB37 DOE Joint Genome Institute (JGI) 3300049282 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 176398620 457721 352 7 728 7 Unrestricted 23.38 Metagenome 3300020555 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 10AUG2009 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020555 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu; NNIvanova@lbl.gov Katherine McMahon; Natalia Ivanova Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 154301292 321401 138 35 233 67 SRX1987803 Unrestricted 0.0 Metagenome 3300011819 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S04-08-R University of California, Los Angeles 3300011819 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 32562474 60703 31 0 54 0 SRX858960 0.0 Metagenome 3300020387 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000405 (ERX556119-ERR599023) CEA Genoscope 3300020387 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -29.5123 37.8586 676478818 1763991 424 49 869 122 0.0 Metagenome 3300014358 *Microbiome Permanent Draft Human fecal and colon tissue microbial communities from Howard University Cancer Center, USA Human colon tissue microbial communities from Howard University Cancer Center, USA - CC0961 HiThru Analytics LLC 3300014358 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Colon mucosa Human colon tissue 31486347 50503 46 0 73 0 SRX1620408 0.0 Metagenome 3300031622 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - CB4_20m DOE Joint Genome Institute (JGI) 3300031622 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified Marine 75.0007 -150.0027 707215473 1425744 309 227 493 369 SRX5797824 Unrestricted 22.28 Metagenome 3300045230 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_5_A DOE Joint Genome Institute (JGI) 3300045230 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 196996242 233352 113 1 121 1 Unrestricted 96.5 Metagenome 3300029366 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 077_5_2_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029366 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 56055671 65016 40 0 53 0 0.0 Metagenome 3300030235 *Microbiome Permanent Draft Marine Fish Microbial Metagenomes Coastal Myxini gut microbial communities from Southern California Bight, Pacific Ocean - XES2B University of California, San Diego, Scripps Institute of Oceanography 3300030235 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton No Host-associated Fish Intestine Digestive system Unclassified fish gut 32.87051111 -117.2607611 37791405 60872 1 1 3 6 0.0 Metagenome 3300057157 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2021-2008 DOE Joint Genome Institute (JGI) 3300057157 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.76265 -83.329 315872478 661299 224 135 365 210 Unrestricted 20.66 Metagenome 3300048013 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_200108.NP1 DOE Joint Genome Institute (JGI) 3300048013 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 682548349 1477715 419 65 674 121 Unrestricted 11.8 Metagenome 3300002175 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Cubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5 DOE Joint Genome Institute (JGI) 3300002175 Metagenome Analysis idba_ud v. 1.0.9 Yes Yes brune@mpi-marburg.mpg.de Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 0.2917 34.856 1992244563 4339893 827 63 1342 75 SRX3315527 Unrestricted 0.0 Metagenome 3300000031 *Microbiome Draft Wetland microbial communities from Twitchell Island in the Sacramento Delta Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site B1 Bulk v2 (version 2) DOE Joint Genome Institute (JGI) 3300000031 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes stringe@lbl.gov, sgtringe@lbl.gov Susannah Tringe Yes 25991679 Environmental Aquatic Wetlands Marine Sediment Wetland 38.10726 -121.648538 17559170 21434 0 0 0 0 Unrestricted 0.0 Metagenome 3300013633 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100732 University of Pennsylvania 3300013633 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 6472243 14847 25 9 43 18 SRX756118 0.0 Metagenome 3300069273 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Yellowstone NP, Wyoming, USA - YELL_048-M-20210707-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069273 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 44.951273 -110.536649 1445675622 3657230 1164 70 2264 124 0.0 Metagenome 3300014519 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 87_4M Beijing Genomics Institute (BGI) 3300014519 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 39923957 47698 16 0 33 1 ERX491316 0.0 Metagenome 3300013378 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100669 University of Pennsylvania 3300013378 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 13161080 35343 20 0 28 0 SRX756425 0.0 Metagenome 3300069494 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_012-M-20160728-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069494 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 110520187 311250 262 14 549 21 0.0 Metagenome 3300014646 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01408 Weill Cornell Medical College 3300014646 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.84 -73.9 27321246 37189 24 0 31 0 SRX823348 0.0 Metagenome 3300008522 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765135172 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008522 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 124642862 179428 86 0 106 0 0.0 Metagenome 3300029017 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 241_12M Beijing Genomics Institute (BGI) 3300029017 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 79073666 96735 74 0 102 0 ERX491019 0.0 Metagenome 3300044744 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 127-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044744 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9389 -107.0126 612794589 1338445 294 63 500 90 Unrestricted 8.68 Metagenome 3300021402 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O DOE Joint Genome Institute (JGI) 3300021402 Metagenome Analysis spades v. 3.11.1-check Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 2821273599 6381620 947 124 1714 218 SRX4022440 Unrestricted 8.42 Metagenome 3300002520 *Microbiome Permanent Draft Pimephales promelas gut microbial communities from the University of Colorado, Denver, USA, during Triclosan exposure experiment Gut microbiomes of Pimephales promelas (fathead minnow) during Triclosan exposure experiment - D14H2- High Triclosan exposure day 14 3300002520 Metagenome Analysis idba_ud released by JGI data releasing policy No Yes christopher.s.miller@ucdenver.edu Christopher Miller, Christopher S. Miller No Host-associated Fish Intestine Digestive system Unclassified Pimephales promelas gut 39.7392 -104.9847 529970431 924400 58 11 135 13 0.0 Metagenome 3300042478 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME15Aug2014-rr0703 DOE Joint Genome Institute (JGI) 3300042478 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 807964578 1339577 338 49 515 96 Unrestricted 15.24 Metagenome 3300025709 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_130m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025709 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 486868401 963305 335 49 556 59 Unrestricted 0.0 Metagenome 3300019884 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - L2s2 DOE Joint Genome Institute (JGI) 3300019884 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.8826 -106.9101 337583612 758921 286 22 642 26 SRX3958616, SRX3958615 Unrestricted 0.0 Metagenome 3300053097 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 endosphere DOE Joint Genome Institute (JGI) 3300053097 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121439 -123.270375 696700328 955024 73 83 103 91 Unrestricted 18.83 Metagenome 3300022536 *Microbiome Permanent Draft Marine microbial communities from toxin-producing cyanobacterial mats in Guam and Florida Keys Cyanobacterial mat microbial communities from Big Pine Ledges, Florida Keys National Marine Sanctuary, Florida, USA - sample 1 v2 University of Maryland 3300022536 Metagenome Analysis MEGAHIT v. 1.1.1 released by JGI data releasing policy No Yes juliemeyer@ufl.edu Julie Meyer No Environmental Aquatic Oceanic Marine Benthic microbial mat 24.563056 -81.400833 261260266 355275 58 21 78 29 0.0 Metagenome 3300030328 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_137 - TARA_R100000742 CEA Genoscope 3300030328 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine 14.2075 -116.6468 200001457 426703 3 0 10 0 0.0 Metagenome 3300054086 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin05_10_metaG re-annotation DOE Joint Genome Institute (JGI) 3300054086 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1171872462 2557341 580 37 970 57 SRX3292369 0.0 Metagenome 3300041882 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_475 MetaG AgResearch, New Zealand, Mosgeil 3300041882 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 2063200008 4115581 371 33 1312 52 0.0 Metagenome 3300001255 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300001255 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.099444 -89.404444 3518216 9203 5 3 14 7 SRX3310671 Unrestricted 0.0 Metagenome 3300026111 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026111 Metagenome Analysis spades v. 3.11.1 released Yes Yes jzz0026@lbl.gov; sgtringe@lbl.gov Jinglie Zhou; Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.049904 -121.765358 177314062 408265 214 2 347 5 SRX7182422 Unrestricted 0.0 Metagenome 3300012529 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ568 (21.06) DOE Joint Genome Institute (JGI) 3300012529 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.1031 163.6192 626557785 1385786 382 1 626 1 SRX3372306 Unrestricted 0.0 Metagenome 2166559021 *Microbiome Permanent Draft Freshwater microbial communities from LaBonte Lake, Laramie, Wyoming, USA Fresh water microbial communities from LaBonte Lake, Laramie, Wyoming, sample from peak-bloom 2 DOE Joint Genome Institute (JGI) 2166559021 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes sgtringe@lbl.gov, nlward@uwyo.edu Susannah Tringe, Naomi Ward No Environmental Aquatic Lake Freshwater Algal bloom Freshwater 41.321 -105.586 170450482 475224 278 29 527 59 Unrestricted 0.0 Metagenome 3300021064 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos B2 DOE Joint Genome Institute (JGI) 3300021064 Metagenome Analysis spades v. 3.10.1 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Deep subsurface sediment 38.96 -106.99 307874459 797334 415 5 765 6 SRX4003218 Unrestricted 21.33 Metagenome 3300046057 *Microbiome Permanent Draft Halite microbial communities from Atacama Desert, Chile Halite microbial communities from Salar Grande, Atacama Desert, Chile - SG4 Novogene 3300046057 Metagenome Analysis metaWRAP v. 1.3.2 No Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Halite Rock-dwelling (endoliths) Unclassified Halite -20.952 -70.016 148617371 178178 24 1 28 1 0.0 Metagenome 3300056664 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.20C.13 SIP fraction DOE Joint Genome Institute (JGI) 3300056664 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 257383121 429680 76 22 154 35 Unrestricted 10.78 Metagenome 3300031763 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29 DOE Joint Genome Institute (JGI) 3300031763 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 793094892 1906562 334 3 599 2 SRX5820289 Unrestricted 11.78 Metagenome 3300000696 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 51 DOE Joint Genome Institute (JGI) 3300000696 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 7492711 24573 29 0 51 0 SRX4340974 Unrestricted 0.0 Metagenome 3300040079 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_002-M-14-37-20140117-GEN-DNA1 Argonne National Laboratory 3300040079 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 13696370 34551 36 2 61 5 ERX2133929 0.0 Metagenome 3300020715 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 27JUL2009 hypolimnion DOE Joint Genome Institute (JGI) 3300020715 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu; rrmalmstrom@lbl.gov Katherine McMahon; Rex Malmstrom Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 107414156 217192 98 11 151 16 Unrestricted 0.0 Metagenome 3300069625 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_003-M-20140325-COMP-DNA1 re-annotation Argonne National Laboratory 3300069625 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 7446210 24035 48 6 119 12 ERX2134028 0.0 Metagenome 3300026303 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_2/2/2009_ DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026303 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 276078593 432131 151 10 188 13 SRX2713537 Unrestricted 0.0 Metagenome 3300013779 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS849 IDBA reassembly Marine Biological Laboratory 3300013779 Metagenome Analysis reassembly with IDBA-UD released by JGI data releasing policy No Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow diffuse flow hydrothermal vent 18.376687 -81.798096 7.13 5699510 7739 7 0 5 0 0.0 Metagenome 3300023201 *Microbiome Finished PPCP degradation by aerobic enrichment cultures (carbon source) Activated sludge enriched bacterial communities from WWTP in Fort Collins, Colorado, USA - PN Argonne National Laboratory 3300023201 Metagenome Analysis MegaHit v. 1.0.6 released by Karen Rossmassler Yes Yes karen.rossmassler@gmail.com Karen Rossmassler No Engineered Wastewater Unclassified Activated Sludge Unclassified activated sludge 40.585258 -105.084419 416988662 807939 375 12 582 17 0.0 Metagenome 3300048561 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Woodchip biofilm microbial communities from lab scale WBR in Cornell University, Ithaca, NY, USA - rep3_drw_p1_w0 DOE Joint Genome Institute (JGI) 3300048561 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 785954208 1525668 480 21 739 37 Unrestricted 8.77 Metagenome 3300003094 *Microbiome Permanent Draft Sea squirt microbial communities from various locations Lissoclinum patella microbial communities from various locations - P4 Papua New Guinea 3300003094 Metagenome Analysis Newbler v. 2.3 Made public because these are downloaded from Genbank No Yes ews1@utah.edu Eric Schmidt Yes 22123943 Host-associated Tunicates Unclassified Ascidians Unclassified Sea squirt -6.712143 147.030253 5836875 6558 2 0 2 0 0.0 Metagenome 3300049076 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - B8_A_BS (version 2) DOE Joint Genome Institute (JGI) 3300049076 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 247161475 559432 593 19 1261 33 Unrestricted 0.0 Metagenome 3300025935 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025935 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 3345676673 8053121 1289 83 2420 140 SRX3203325 Unrestricted 0.0 Metagenome 3300000143 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 53 01/11/11 10m DOE Joint Genome Institute (JGI) 3300000143 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 13836185 35988 33 7 66 10 Unrestricted 0.0 Metagenome 3300070840 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_005-O-20180807-COMP-DNA1 3300070840 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 1890477 6427 28 2 51 0 0.0 Metagenome 3300026244 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from above oceans and continental USA - SEAC4RS-RF7-005 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026244 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 17534604 55321 42 7 79 7 Unrestricted 0.0 Metagenome 7000000401 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 158802708 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000401 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 173591621 273164 0 0 0 0 0.0 Metagenome 3300012830 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - DID2934_E24_Xylan MG DOE Joint Genome Institute (JGI) 3300012830 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 90451188 125640 105 1 130 1 SRX3564845 Unrestricted 0.0 Metagenome 3300010216 *Microbiome Permanent Draft Freshwater microbial communities enriched with nitrile substrates Freshwater aquifer microbial community from Bangor, North Wales, UK, enriched with nitrile substrate, replicate 3 Fidelity Systems Inc 3300010216 Metagenome Analysis Phred/Phrap/Consed v. 23.0 released per JGI data release policy Yes Yes stepan.toshchakov@gmail.com Stepan Toshchakov No Environmental Aquatic Groundwater Deep subsurface Unclassified freshwater 53.23 -4.13 59468341 131617 23 0 63 3 0.0 Metagenome 3300003770 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_5/23/2013_ DNA DOE Joint Genome Institute (JGI) 3300003770 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 170546538 292638 198 10 271 13 SRX2714495 Unrestricted 0.0 Metagenome 3300032256 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top DOE Joint Genome Institute (JGI) 3300032256 Metagenome Analysis spades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5107 -110.3566 3462524452 7974536 1605 56 2725 98 SRX6379706 Unrestricted 9.42 Metagenome 3300036440 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_C2 DOE Joint Genome Institute (JGI) 3300036440 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 91741252 281667 281 23 422 42 SRX8396934 Unrestricted 4.86 Metagenome 3300006667 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T8 (1) BES Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006667 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 45549417 81032 60 0 85 0 0.0 Metagenome 3300054558 *Microbiome Permanent Draft Soil microbial communities from pasture in Hopland Research and Extension Center, CA, USA Soil viral communities from pasture in Hopland Research and Extension Center, CA, USA - T2-H218O+P-B library kit 1SPlus DOE Joint Genome Institute (JGI) 3300054558 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes trubl1@llnl.gov Gareth Trubl No Environmental Terrestrial Pasture Soil Unclassified Soil 39.00177 -123.06967 225387322 576588 127 0 211 0 Unrestricted 74.55 Metagenome 3300028635 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Thr DOE Joint Genome Institute (JGI) 3300028635 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 304821735 516129 220 3 307 6 SRX5281883 Unrestricted 25.82 Metagenome 3300006955 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Dobu ""control"", cg4dc" University of New South Wales 3300006955 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Cinachyra sp. (marine sponge) -9.752083 150.854133 3899510 9799 3 0 7 1 0.0 Metagenome 3300043129 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5NP15 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043129 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 79299790 190361 121 5 214 6 SRX8379426 Unrestricted 19.81 Metagenome 3300005520 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV251 DOE Joint Genome Institute (JGI) 3300005520 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 540104985 1447303 538 8 1039 15 SRX2782446 Unrestricted 0.0 Metagenome 3300045478 *Microbiome Draft Lake microbial communities from Canada Lake sediment microbial communities from the Boreal Shield ecozone, Canada - Lake 06-267 Genome Quebec 3300045478 Metagenome Analysis MEGAHIT v1.0.6 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Lake Sediment 48.930281 -57.880527 228927409 318446 102 5 135 11 0.0 Metagenome 3300041884 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_489 MetaG AgResearch, New Zealand, Mosgeil 3300041884 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1196232138 2466192 322 37 1028 50 0.0 Metagenome 3300012271 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #432 DOE Joint Genome Institute (JGI) 3300012271 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 258147537 530570 220 31 394 49 SRX3295568 Unrestricted 0.0 Metagenome 3300008103 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 764892411 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008103 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 173077103 226169 153 0 188 0 0.0 Metagenome 3300025536 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_8Ca (SPAdes) DOE Joint Genome Institute (JGI) 3300025536 Metagenome Analysis spades v. 3.11.1 Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 207470306 369777 155 21 243 35 SRX3322250 Unrestricted 0.0 Metagenome 3300009098 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG DOE Joint Genome Institute (JGI) 3300009098 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 4121443227 8275146 2352 131 3858 218 SRX3203330 Unrestricted 0.0 Metagenome 3300021404 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O DOE Joint Genome Institute (JGI) 3300021404 Metagenome Analysis spades v. 3.11.1-check Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 2822954538 6171876 975 132 1701 237 SRX4022444 Unrestricted 8.83 Metagenome 3300031920 *Microbiome Permanent Draft Microbial communities from the deep biosphere Marine sediment microbial communities from the Haakon Mosby mud volcano in the Barents Sea, Arctic Ocean - PS64_336_1_GC re-assembly The Marine Biological Laboratory 3300031920 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Mud volcano Marine Sediment Sediment 72.0 14.726 430464219 1189177 279 5 503 11 SRX993395, SRX549999, SRX550015 0.0 Metagenome 3300027326 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027326 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 182230083 496982 306 44 602 61 SRX3311936 Unrestricted 0.0 Metagenome 3300019882 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - H3a2 DOE Joint Genome Institute (JGI) 3300019882 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9827 -107.0102 381658283 827124 242 15 529 18 SRX3945343, SRX3945344 Unrestricted 0.0 Metagenome 3300042381 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME27Apr2015-rr0842 DOE Joint Genome Institute (JGI) 3300042381 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 817156073 1272947 272 79 361 123 Unrestricted 17.4 Metagenome 3300056662 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.20C.11 SIP fraction DOE Joint Genome Institute (JGI) 3300056662 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 273770933 502642 189 119 358 141 Unrestricted 10.31 Metagenome 3300021062 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_10-13C DOE Joint Genome Institute (JGI) 3300021062 Metagenome Analysis spades v. 3.10.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.3049 -116.2547 213311580 526868 308 28 495 41 SRX3936778 Unrestricted 26.99 Metagenome 3300031200 *Microbiome Permanent Draft Soil and ectomycorrhiza microbial communities from Populus trichocarpa stands in riparian zones in the Pacific Northwest, United States Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 9_S DOE Joint Genome Institute (JGI) 3300031200 Metagenome Analysis spades v. 3.12.0 Yes Yes kpeay@stanford.edu Kabir Peay No Environmental Terrestrial Riparian zone Soil Trees stand soil 45.0822 -123.061 677462861 2150620 879 50 1574 87 SRX5650453 Unrestricted 7.69 Metagenome 3300005839 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP MetaG DOE Joint Genome Institute (JGI) 3300005839 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 603093599 1251475 557 1 871 5 SRX2740066 Unrestricted 0.0 Metagenome 3300009577 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3750_2500 DOE Joint Genome Institute (JGI) 3300009577 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic 8.2514 -49.9993 28921175 44669 30 6 35 14 SRX2754262 Unrestricted 0.0 Metagenome 3300034093 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072 DOE Joint Genome Institute (JGI) 3300034093 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1169133066 2378431 443 46 670 66 SRX7622043 Unrestricted 13.93 Metagenome 3300026242 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from above oceans and continental USA - SEAC4RS-RF9-009 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026242 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 13226479 44783 63 10 96 13 Unrestricted 0.0 Metagenome 3300022935 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG (version 2) DOE Joint Genome Institute (JGI) 3300022935 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1040207641 1940211 501 72 733 118 SRX4072330 Unrestricted 27.64 Metagenome 3300023050 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-319 DOE Joint Genome Institute (JGI) 3300023050 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Unclassified Plant litter Unclassified leaf litter 40.2526 -123.026 117736192 237988 60 61 59 94 SRX4392950 Unrestricted 35.1 Metagenome 2088090008 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3 v1 DOE Joint Genome Institute (JGI) 2088090008 Metagenome Analysis released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 98793422 171225 45 0 82 0 Unrestricted 0.0 Metagenome 3300003092 *Microbiome Permanent Draft Hot spring microbial communities from Five Geothermal Springs in Yellowstone National Park, USA Hot spring microbial communities from Five Geothermal Springs in Yellowstone National Park, USA - Joseph's Coat Hot Spring-Scorodite Spring J. Craig Venter Institute 3300003092 Metagenome Analysis Made public because these are downloaded from Genbank No Yes Rusch, D No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.969421 -110.690383 6.1 3876971 5753 0 0 1 0 0.0 Metagenome 3300036900 *Microbiome Permanent Draft Soil microbial communities from fields in the western Corn Belt region, Nebraska, United States Soil microbial communities from fields in the western Corn Belt region, Nebraska, United States - Switchgrass plot 313, 120 kg/ha N, depth 1 DOE Joint Genome Institute (JGI) 3300036900 Metagenome Analysis metaspades v. 3.13.0 Yes Yes marty.schmer@ars.usda.gov Marty Schmer No Environmental Terrestrial Agricultural land Soil Unclassified soil 41.1681 -96.4109 1106072561 1829836 416 13 680 27 SRX8296369 Unrestricted 13.2 Metagenome 7000000061 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763860675 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000061 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 73136561 136381 0 0 0 0 0.0 Metagenome 3300040333 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 064_R1_022417 University of Maryland 3300040333 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.5287 18.89726 4809022 12810 25 2 28 4 0.0 Metagenome 3300026859 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 25 (SPAdes) DOE Joint Genome Institute (JGI) 3300026859 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 57956312 141830 84 2 164 1 SRX4340639 Unrestricted 0.0 Metagenome 3300027190 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.733 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027190 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 138872145 323857 191 52 292 85 SRX2753574 Unrestricted 0.0 Metagenome 7000000199 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 158337416 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000199 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 1875790 4012 0 0 0 0 SRX023632, SRX023631 0.0 Metagenome 3300007152 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Seawater microbiome, Papua New Guinea CO2 seep, Dobu ""bubble"", waterEBds3" University of New South Wales 3300007152 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au Nicole Webster No Environmental Aquatic Volcanic Marine Unclassified Volcanic CO2 seeps -9.73665 150.867667 148793567 361655 237 1 387 0 0.0 Metagenome 3300017738 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 51 SPOT_SRF_2014-02-12 DOE Joint Genome Institute (JGI) 3300017738 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 278141537 699739 47 19 95 33 SRX7280100, SRX7280099 Unrestricted 0.0 Metagenome 2084038015 *Microbiome Permanent Draft Soil microbial community from Hopland, California, USA, that is PCE polluted Soil microbial community from Hopland, California, USA, that is PCE polluted - amended with molasses GATC-Biotech AG, Konstanz, Germany 2084038015 Metagenome Analysis released per JGI data release policy No Yes timothy.vogel@ec-lyon.fr Timothy M. Vogel, Timothy Vogel No Environmental Terrestrial Unclassified Soil Contaminated Soil 38.9727 -123.1145 4159211 12090 25 0 43 0 0.0 Metagenome 3300022308 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_24 DOE Joint Genome Institute (JGI) 3300022308 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Sediment Marine Unclassified sediment 37.7 -122.34 996742035 2336525 912 76 1591 136 SRX4053915 Unrestricted 7.69 Metagenome 3300049284 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MB3 DOE Joint Genome Institute (JGI) 3300049284 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 7067492 18304 46 1 88 2 Unrestricted 23.4 Metagenome 3300028456 *Microbiome Permanent Draft The metagenomic project of corncob isolate EMSD5 Plant tissue associated bacterial communities from corncob in Beijing, China - culture EMSD5 Chengdu Institute of Biology, Chinese Academy of Sciences 3300028456 Metagenome Analysis HGAP by SMRTLink v. 1.5.1 released by JGI data releasing policy No Yes ruijp@cib.ac.cn Junpeng Rui No Host-associated Plants Cob Phyllosphere Unclassified plant tissue 39.92 116.46 8320795 8033 15 0 14 0 0.0 Metagenome 3300045871 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from the Sylvan Springs Area, Yellowstone National Park, WY, United States - MSUNE_S_04 University of Wisconsin, Madison 3300045871 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.70055 -110.76543 225289707 329535 157 4 196 3 0.0 Metagenome 3300017457 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Organic Lake, Antarctica - Site 233 with 0.8UM filter J. Craig Venter Institute 3300017457 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli Yes 21124488 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 11287428 22916 25 3 35 1 0.0 Metagenome 3300005083 *Microbiome Permanent Draft Termite gut microbial communities from Australia Mastotermes darwiniensis gut microbial communities from University of Queensland, Australia under feeding trial University of Queensland 3300005083 Metagenome Analysis CLC released per JGI data release policy No Yes nurdyana.abdulrahman@uqconnect.edu.au, nurdyana.abdul.rahman@sgh.com.sg Abdul Rahman, Nurdyana Abdul Rahman No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Mastotermes darwiniensis gut -27.494746 153.011858 731981760 1687545 200 19 419 26 0.0 Metagenome 3300026695 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN391 (SPAdes) DOE Joint Genome Institute (JGI) 3300026695 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Soil 44.20517707 -122.1284473 13452259 43728 52 3 80 5 SRX1986737 Unrestricted 0.0 Metagenome 2209111020 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - FC (Ethanol 20%) assembled 454 Life Sciences 2209111020 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.804241 -0.372114 28248687 43500 14 0 25 0 0.0 Metagenome 3300051095 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Leeds, Wisconsin, USA - 26_767_WI_DR_0cm_c2_T1_16O DOE Joint Genome Institute (JGI) 3300051095 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 43.30485 -89.3309 1160640742 2010945 448 3 770 6 Restricted 13.82 Metagenome 3300019374 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 3 DOE Joint Genome Institute (JGI) 3300019374 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4148 -119.8405 306822252 490142 2106 2 3477 10 SRX3962685 Unrestricted 119.47 Metagenome 3300037173 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 S2 10-14 DOE Joint Genome Institute (JGI) 3300037173 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 982168051 1642385 261 9 439 14 SRX8144759 Unrestricted 13.29 Metagenome 3300004277 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_200m DOE Joint Genome Institute (JGI) 3300004277 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 728946061 1734385 624 39 1108 80 Unrestricted 0.0 Metagenome 3300037085 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-1-S DOE Joint Genome Institute (JGI) 3300037085 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0468 332343635 729158 259 6 445 8 SRX8137640 Unrestricted 8.46 Metagenome 3300070285 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dead Lake, Alabama, USA - DELA_038-M-20160824-COMP-DNA1 3300070285 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 27952473 85715 63 2 134 3 0.0 Metagenome 3300040816 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Estuary water microbial communities from Narragansett Bay, Rhode Island, USA E1_negO2CP_NB2 DOE Joint Genome Institute (JGI) 3300040816 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.6925 -71.4244 553686282 832698 325 11 383 13 SRX9641632 Unrestricted 15.98 Metagenome 3300007281 *Microbiome Permanent Draft Activated Sludge Process Metagenomes Activated sludge microbial communities from bioreactor with dissolved oxygen in CSIR-NEERI, Nagpur, India - 2ppm of oxygen, sample B Xcelris labs Ltd 3300007281 Metagenome Analysis covaris released per JGI data release policy No Yes neetijadeja@hotmail.com Niti B Jadeja, Niti Jadeja No Engineered Wastewater Unclassified Activated Sludge Unclassified aeration tank of activated sludge process 21.1458004 79.0881546 76313382 194226 35 0 68 2 0.0 Metagenome 3300042230 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D206_2 DOE Joint Genome Institute (JGI) 3300042230 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 162846632 225349 105 9 171 15 Unrestricted 74.84 Metagenome 3300005175 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0927_02_20cm DOE Joint Genome Institute (JGI) 3300005175 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2225358916 6323618 2349 93 3946 129 SRX2519704 Unrestricted 0.0 Metagenome 3300031624 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-10 DOE Joint Genome Institute (JGI) 3300031624 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh sediment 42.722 -70.847 710959352 1235924 547 3 791 6 SRX6464093 Unrestricted 19.66 Metagenome 3300056723 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FL_02 DOE Joint Genome Institute (JGI) 3300056723 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.407926 -82.180036 8799477 14257 2 2 3 1 Restricted 0.0 Metagenome 3300069492 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_010-M-20160729-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069492 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 47219168 141139 156 6 335 14 0.0 Metagenome 3300046473 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere DOE Joint Genome Institute (JGI) 3300046473 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1209 -123.2715 975723534 1637266 377 108 611 112 Unrestricted 13.13 Metagenome 3300008524 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160319967 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008524 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 114628481 160648 93 0 128 1 0.0 Metagenome 3300044742 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 063-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044742 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9211 -106.9516 1292935445 3017343 749 16 1317 34 Unrestricted 7.81 Metagenome 3300011151 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00531 Weill Cornell Medical College 3300011151 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.71 -73.94 19851393 31623 11 0 22 0 SRX822499 0.0 Metagenome 7000000513 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 737052003 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000513 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 111385965 190237 0 0 0 0 0.0 Metagenome 3300013481 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01089 Weill Cornell Medical College 3300013481 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.65 -73.95 11758983 13069 5 0 10 0 SRX823044 0.0 Metagenome 3300013998 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01033 Weill Cornell Medical College 3300013998 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.67 -73.85 20740992 24279 11 0 18 0 SRX822995 0.0 Metagenome 3300059701 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG S.737 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059701 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 147671781 361005 215 60 320 109 SRX2753578 Unrestricted 0.0 Metagenome 3300070856 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Treehaven, Wisconsin, USA - TREE_041-M-20170710-COMP-DNA1 3300070856 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 24321150 75048 54 2 122 4 0.0 Metagenome 3300029512 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005365-24 Beijing Genomics Institute (BGI) 3300029512 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 163142311 187872 104 0 165 0 0.0 Metagenome 3300050262 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_14 DOE Joint Genome Institute (JGI) 3300050262 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -76.901 160.91 231224835 392010 21 16 33 32 SRX18235891 Restricted 40.76 Metagenome 3300025442 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_8_100 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025442 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 239897380 390527 94 0 143 0 SRX3003281 Unrestricted 0.0 Metagenome 3300025904 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025904 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn rhizosphere 42.3948 -85.3738 1618083422 3683158 1148 133 2007 194 SRX1990928 Unrestricted 0.0 Metagenome 3300035420 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Seawater microbial communities from Algarve, Portugal - SW03 Euk Molecular Research LP (MR DNA) 3300035420 Metagenome Analysis Metawrap workflow v. 1.0.5 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Environmental Aquatic Oceanic Marine Unclassified seawater 36.979778 -7.989111 2716724 4004 2 0 2 0 0.0 Metagenome 3300040425 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_002-M-20130726-COMP-DNA1 Argonne National Laboratory 3300040425 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 4567491 10839 22 7 29 10 0.0 Metagenome 3300040990 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Sweden Surface water microbial communities from sewage treatment plant in Sweden - SWESTP50 - Henriksdal-treated 162 University of Gothenburg 3300040990 Metagenome Analysis Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified surface water 59.310676 18.108437 38141286 101180 104 7 213 6 0.0 Metagenome 3300022902 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_135_MG DOE Joint Genome Institute (JGI) 3300022902 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca; shallam@interchange.ubc.ca Sean Crowe; Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5847 -123.5008 722801894 1271708 497 3 723 4 SRX4482453 Unrestricted 33.92 Metagenome 3300001595 *Microbiome Permanent Draft Grassland microbial communities from Loma Ridge, Irvine, California, USA, for plant litter decomposition studies Grassland microbial communities from Loma Ridge, Irvine, California, USA, for plant litter decomposition studies - fosmids DOE Joint Genome Institute (JGI) 3300001595 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date No Yes sgtringe@lbl.gov, sgtringe@lbl.gov; ELBrodie@lbl.gov Susannah Tringe, Susannah Tringe; Eoin Brodie No Environmental Terrestrial Grasslands Soil Unclassified Grassland 33.742 -117.7032 4277007 4116 3 0 4 0 Unrestricted 0.0 Metagenome 3300022444 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Lake Baghdad, Rottnest Island (WA - Australia) - LBBM3 JM90 AGRF 3300022444 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.994794 115.523776 62920863 107436 49 0 81 0 0.0 Metagenome 3300041978 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - C_37_wk_5 DOE Joint Genome Institute (JGI) 3300041978 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9949 -107.07 218986248 576970 304 24 613 39 SRX14809851 Unrestricted 7.66 Metagenome 3300007039 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764305738 replicate 1 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007039 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 36664906 67427 32 0 48 0 0.0 Metagenome 3300028604 *Microbiome Permanent Draft Haloquadratum walsbyi amplified targeted metavirome Hypersaline water microbial communities from salt crystallizer pond in Santa Pola, Alicante, Spain - CR30 University of Alicante 3300028604 Metagenome Analysis MetaSpades v. 3.10 released by JGI data releasing policy No Yes juditvillamor@ua.es Judith Villamor No Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Unclassified hypersaline water 38.19684 -0.585584 6055484 17735 0 0 3 0 0.0 Metagenome 3300038695 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Oval Lake, Antarctica - #25 Australian Centre for Ecogenomics 3300038695 Metagenome Analysis Spades v. 3.13.0 released by Michelle Allen Yes Yes m.allen@unsw.edu.au Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5344 78.274733 409450770 811942 289 20 486 38 0.0 Metagenome 3300025224 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025224 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 64930142 74926 48 0 59 0 SRX2770679 Unrestricted 0.0 Metagenome 7000000026 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158742018 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000026 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 119405106 208177 0 0 0 0 0.0 Metagenome 3300032240 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime Ecozone, Canada - Lake 07-015 Genome Quebec 3300032240 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.256065 -64.604625 702268620 1403645 365 59 673 115 0.0 Metagenome 3300022222 *Microbiome Permanent Draft Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.BULKMAT1 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022222 Metagenome Analysis spades v. 3.11.1-check Yes Yes dysumner@ucdavis.edu Dawn Sumner No Environmental Aquatic Lake Freshwater Microbial mats freshwater microbial mat -77.5281 161.59 1019498251 2204756 697 49 1234 99 SRX3539175, SRX3539174 Unrestricted 0.0 Metagenome 3300013974 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01244 Weill Cornell Medical College 3300013974 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.61 -73.97 4716164 4606 5 0 5 0 SRX823199 0.0 Metagenome 3300013392 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR13_S2_MetaG DOE Joint Genome Institute (JGI) 3300013392 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 61.2418 21.4803 145904395 295108 189 3 292 4 SRX3604021 Unrestricted 97.33 Metagenome 3300043631 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 288-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043631 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9796 -107.0385 632169351 1628939 505 13 865 44 Unrestricted 7.16 Metagenome 3300001376 *Microbiome Permanent Draft Goat rumen microbial communities from Langston University, Oklahoma, USA Goat rumen bacterial communities from Langston, Oklahoma, USA Cornell University 3300001376 Metagenome Analysis released per Rekha No Yes zsuping@tnstate.edu Suping Zhou No Host-associated Mammals Stomach Digestive system Rumen Goat rumen 35.453976 -97.515884 64563911 172032 350 22 813 32 0.0 Metagenome 3300069381 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_007-M-20160809-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069381 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 14830873 47126 43 1 78 4 0.0 Metagenome 3300027361 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027361 Metagenome Analysis spades v. 3.11.1 Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Host-associated Plants Nodule Roots Unclassified Root nodules 34.0722 -118.4441 386455585 314441 17 6 17 11 SRX2752627 Unrestricted 0.0 Metagenome 3300048925 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled DOE Joint Genome Institute (JGI) 3300048925 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Unclassified Roots Unclassified Root 42.40581 -85.40228 1060159946 1463259 393 64 456 71 Unrestricted 30.17 Metagenome 3300037721 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_070717_5_v DOE Joint Genome Institute (JGI) 3300037721 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 1359198383 2238772 600 21 1013 29 SRX9162318 Unrestricted 12.32 Metagenome 3300037354 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 E-2-S DOE Joint Genome Institute (JGI) 3300037354 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 359608378 893603 428 34 792 44 SRX9097212 Unrestricted 6.59 Metagenome 3300046712 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-P1(1) 10-14 DOE Joint Genome Institute (JGI) 3300046712 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.355 19.0438 629837691 962955 149 10 257 18 Restricted 12.36 Metagenome 3300007993 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160704339 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007993 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 93702665 143302 97 2 115 5 0.0 Metagenome 3300014954 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 615_12M Beijing Genomics Institute (BGI) 3300014954 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 130495543 185645 74 0 131 0 ERX491267 0.0 Metagenome 3300030620 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111 (version 2) DOE Joint Genome Institute (JGI) 3300030620 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9888 -108.3994 2841845515 6069294 1520 31 2420 42 SRX5340341, SRX5340340 Unrestricted 0.0 Metagenome 3300069230 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Santa Rita Experimental Range, Tucson, Arizona, USA - SRER_047-M-20210809-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069230 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Desert Soil Unclassified Terrestrial soil 31.910358 -110.838435 1303162278 3360024 1301 12 2592 10 0.0 Metagenome 3300009790 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome DOE Joint Genome Institute (JGI) 3300009790 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 2.405 -13.602 2887123988 5742181 1350 1460 1848 2242 SRX2525078 Unrestricted 0.0 Metagenome 3300020295 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000071 (ERX555980-ERR599109) CEA Genoscope 3300020295 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 18.9918 64.5757 200667891 436616 155 0 302 2 0.0 Metagenome 3300029752 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 038_10_28_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029752 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 155092943 191260 172 0 212 0 0.0 Metagenome 3300013670 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100751 University of Pennsylvania 3300013670 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8775847 21652 43 5 89 25 SRX756099 0.0 Metagenome 3300070977 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lajas Experimental Station, Puerto Rico, USA - LAJA_046-M-20171127-COMP-DNA1 3300070977 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 5110894 16571 24 4 37 3 0.0 Metagenome 3300030343 *Microbiome Permanent Draft Human fecal microbial communities from healthy and liver cirrhosis patients in Hangzhou, China Human fecal microbial communities from healthy subjects in Hangzhou, China - HV8_Run4 Zhejiang University 3300030343 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 30.0 120.0 55478094 86879 103 0 152 0 0.0 Metagenome 3300020400 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100001115 (ERX555947-ERR598992) CEA Genoscope 3300020400 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -8.9721 -139.2742 929471200 2342918 515 43 821 85 0.0 Metagenome 3300014650 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00550 Weill Cornell Medical College 3300014650 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.65 -73.89 34493428 46031 15 0 14 0 SRX822517 0.0 Metagenome 3300055020 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_27-s27 day 28 DOE Joint Genome Institute (JGI) 3300055020 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 559127688 821157 122 77 169 77 Unrestricted 39.06 Metagenome 3300009074 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430 DOE Joint Genome Institute (JGI) 3300009074 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 511171030 984828 533 65 802 119 SRX2999539 Unrestricted 0.0 Metagenome 3300043096 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver stomach microbial communities from Maple Ridge, British Columbia, Canada - Beaver6Stomach1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043096 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Stomach Digestive system Unclassified stomach 49.18 -122.54 230077315 400193 12 16 19 25 SRX8346454 Unrestricted 29.82 Metagenome 3300045494 *Microbiome Permanent Draft Florida Reef Tract Coral Disease Outbreak Coral surface microbial communities from Montastraea cavernosa, offshore reef, Ft. Lauderdale, FL, USA - McEI -2 University of Florida 3300045494 Metagenome Analysis MEGAHIT v. 1.1.4 released per PI No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified coral surface 26.16 -80.1 116269418 145354 43 4 37 5 0.0 Metagenome 3300025600 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Incubations 11-31A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025600 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.290884 -156.788063 404888073 641872 309 0 389 0 SRX1990926 Unrestricted 0.0 Metagenome 3300028220 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS375 with 0.8UM filter - spades JGI facility at Oak Ridge National Laboratory 3300028220 Metagenome Analysis Spades v. 3.11.1 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 25267683 46491 17 2 20 6 0.0 Metagenome 3300000128 *Microbiome Draft Marine microbial communities from chronically polluted sediments in four geographic locations Marine microbial communities from chronically polluted sediments in Adventfjord, Norway : sample - Svalbard Archipelago station 1 sample NOR 08_45m DOE Joint Genome Institute (JGI) 3300000128 Metagenome Analysis released based on JGI ITS Yes Yes hdionisi@cenpat.edu.ar Hebe Dionisi No Environmental Aquatic Intertidal zone Marine Sediment Marine 78.237209 15.677776 534177234 1286395 766 271 1362 323 Unrestricted 0.0 Metagenome 3300007883 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 158398106 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007883 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 7732327 16174 14 1 20 7 SRX024717, SRX024716, SRX024513, SRX024514 0.0 Metagenome 3300040694 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from LBJ National Grassland , Southern Plains, TX, USA - CLBJ_032-M-20160817-COMP-DNA1 Battelle Memorial Institute 3300040694 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 33.40123 -97.57 1043346 3243 7 0 7 0 0.0 Metagenome 3300006780 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2015_1_7 DOE Joint Genome Institute (JGI) 3300006780 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 12211726 35256 68 0 185 1 SRX2925230 Unrestricted 0.0 Metagenome 3300038859 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Indian Ocean - SQB3 Michigan State University 3300038859 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 22.541667 116.31 63311922 189382 7 2 30 3 0.0 Metagenome 3300056588 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Gunnison, Colorado, USA - gunnisonriver_2019_sed_WHONDRS-S19S_0062 DOE Joint Genome Institute (JGI) 3300056588 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 38.544583 -106.950417 864435832 2030993 814 52 1541 75 Restricted 0.0 Metagenome 7000000237 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764285508 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000237 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 39521892 71780 0 0 0 0 0.0 Metagenome 3300028900 *Microbiome Permanent Draft Axial Seamount Reassemblies Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS915_Marker113_DNA IDBA_UD reassembly Marine Biological Laboratory 3300028900 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes jhuber@whoi.edu; randerson@carleton.edu; cfortunato@gmail.com; elks@mit.edu Julie Huber; Rika Anderson; Caroline Fortunato; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse vent fluid, hydrothermal vents 45.9228 -129.9883 562757777 1344885 934 12 1501 32 0.0 Metagenome 3300038424 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P17_D10 DOE Joint Genome Institute (JGI) 3300038424 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 647338090 888758 221 2 310 1 SRX9404373 Unrestricted 41.08 Metagenome 3300044949 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater bacterial communities from Lake Mendota, Wisconsin, United States - ME_2020-07-24_5m_Bacteria_A DOE Joint Genome Institute (JGI) 3300044949 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 659716403 1041328 275 29 364 37 Unrestricted 15.05 Metagenome 3300008746 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159611913 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008746 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 185624337 299156 123 4 159 8 0.0 Metagenome 3300041700 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_34 MetaG AgResearch, New Zealand, Mosgeil 3300041700 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1355343722 3003850 320 21 1148 32 0.0 Metagenome 3300045107 *Microbiome Permanent Draft Microbial mat bacterial communities from hot springs in Waikite Valley, Taupo Volcanic Zone, New Zealand Microbial mat bacterial communities from hot spring in Waikite Valley, New Zealand - LMW_ETR_NZ_2018_Waikite_6_1a DOE Joint Genome Institute (JGI) 3300045107 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes LMWARD@post.harvard.edu Lewis Ward No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats microbial mat -38.3276 176.3016 1469645808 1905724 498 44 658 56 Unrestricted 20.64 Metagenome 2044078013 *Microbiome Permanent Draft Marine sediment microbial communities from the Eel River Basin, Pacific Ocean, containing methane-oxidizing consortia Marine sediment microbial communities from the Eel River Basin, Pacific Ocean, containing methane-oxidizing consortia - ANME2c_1rp 454 Life Sciences, Pennsylvania State University 2044078013 Metagenome Analysis released per JGI data release policy No Yes vorphan@gps.caltech.edu Victoria Orphan Yes 18467493 Environmental Aquatic Neritic zone/Coastal water Marine Sediment Marine sediment 40.74703 -123.869505 25907622 57367 8 0 31 0 0.0 Metagenome 3300004027 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLC_D2 DOE Joint Genome Institute (JGI) 3300004027 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.197102 -122.010033 836433314 2755201 904 21 1798 28 SRX7142766 Unrestricted 0.0 Metagenome 3300000820 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 28JUN2007 epilimnion v6 (version 5) DOE Joint Genome Institute (JGI) 3300000820 Metagenome Analysis released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 1419216 1473 0 0 0 0 Unrestricted 0.0 Metagenome 3300050281 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_38 DOE Joint Genome Institute (JGI) 3300050281 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -74.179 162.515 435145065 679758 104 19 148 27 SRX18235943 Restricted 28.47 Metagenome 3300039542 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Treehaven, Great Lakes, WI, USA - TREE_002-O-20170707-COMP-DNA1 Battelle Memorial Institute 3300039542 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.49369 -89.58571 143002919 351225 207 59 421 102 0.0 Metagenome 3300029520 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005368-32 Beijing Genomics Institute (BGI) 3300029520 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 180959139 228417 120 0 227 0 0.0 Metagenome 3300031719 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031719 Metagenome Analysis spades v. 3.12.0 Yes Yes pettridge2@llnl.gov; campbell87@llnl.gov Jennifer Pett-Ridge; Ashley Campbell No Environmental Terrestrial Tropical forest Soil Unclassified Soil 18.321 -65.8172 2798350604 6402511 770 21 1438 37 SRX5296075, SRX3604132 Unrestricted 0.0 Metagenome 7000000747 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764649650 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000747 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 11570412 23407 0 0 0 0 0.0 Metagenome 3300035412 *Microbiome Permanent Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-10-2_at_0-1_cm Genome Quebec 3300035412 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.88147 -73.76618 401667810 1068745 589 32 1159 52 0.0 Metagenome 3300009536 *Microbiome Permanent Draft Marine microbial communities associated with Trichodesmium colonies (puff morphology) from Station ALOHA, North Pacific Subtropical Gyre Marine microbial communities associated with Trichodesmium colonies (puff morphology) from Station ALOHA, North Pacific Subtropical Gyre - E19 Oregon State University 3300009536 Metagenome Analysis MEGAHIT v1.0.1 Published on request from submitter on 04/04/2017 No Yes rosiegradoville@gmail.com Mary Gradoville Yes 28729854 Environmental Aquatic Pelagic zone Marine Unclassified marine 22.0 -158.0 719362166 1794418 620 40 1003 76 0.0 Metagenome 3300025098 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025098 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.509 -76.198 233223791 510335 26 0 36 0 SRX2927601 Unrestricted 0.0 Metagenome 3300034695 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2012_500m DOE Joint Genome Institute (JGI) 3300034695 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 50.0 -145.0 511943496 1252917 388 50 617 91 SRX8219589 Unrestricted 15.71 Metagenome 3300033135 *Microbiome Permanent Draft Marine microbial communities from various coral reefs in Barbados Marine microbial communities from Bellairs Reef, Barbados - B1 Genome Quebec 3300033135 Metagenome Analysis metaSpades v. 3.11.1 released by JGI data releasing policy Yes Yes hallett.bioinformatics@gmail.com Michael Hallett No Environmental Aquatic Intertidal zone Marine Coral reef Marine 13.191718 -59.641435 1239848726 4295178 475 105 1093 275 SRX9689228 0.0 Metagenome 3300027382 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius filocauda PIANOSA.1 (version 2) DOE Joint Genome Institute (JGI) 3300027382 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 53.109679 8.847516 490524426 528150 3 3 4 14 SRX2577642 Unrestricted 0.0 Metagenome 3300012652 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100219 University of Pennsylvania 3300012652 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 31085429 68790 28 1 38 0 SRX756682 0.0 Metagenome 3300044925 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_6_C DOE Joint Genome Institute (JGI) 3300044925 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 132532387 160124 85 1 87 2 Unrestricted 122.52 Metagenome 3300044490 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Towuti Lake, South Sulawesi, Indonesia - Towuti_185m_2014 DOE Joint Genome Institute (JGI) 3300044490 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.7 121.4 757160045 1321072 523 4 847 3 Unrestricted 12.4 Metagenome 3300019826 *Microbiome Permanent Draft Microbial mat bacterial communities from Rhone River delta, Camargue, France Microbial mat bacterial communities from Rhone River delta, Camargue, France - 2 University of Barcelona 3300019826 Metagenome Analysis velvet released by Mercedes Berlanga No Yes mberlanga@ub.edu Mercedes Berlanga No Environmental Aquatic Unclassified Sediment Unclassified Microbial mat 43.6 4.6 62785259 175293 89 19 121 26 0.0 Metagenome 3300069362 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_027-O-20170624-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069362 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 9044742 28986 85 7 130 15 0.0 Metagenome 3300028379 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300028379 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 4292870490 9660484 1616 210 2856 359 SRX2740171 Unrestricted 0.0 Metagenome 3300050152 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D10_RHK2_2_to_RHK2 DOE Joint Genome Institute (JGI) 3300050152 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.153 -124.211 177754730 358031 164 55 275 84 Unrestricted 14.35 Metagenome 3300000539 *Microbiome Permanent Draft Hot spring nanoarchaeal communities from Obsidian Pool, Yellowstone National Park Hot spring nanoarchaeal communities from Obsidian Pool, Yellowstone National Park HudsonAlpha Institute for Biotechnology, Oak Ridge National Laboratory 3300000539 Metagenome Analysis CLCbio, Velvet released per JGI data release policy No Yes podarm@ornl.gov Mircea Podar No Environmental Aquatic Unclassified Thermal springs Unclassified Hot spring 44.6 -110.433 1509435 1734 1 0 1 0 0.0 Metagenome 3300025577 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025577 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 27054497, 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 316637539 597781 266 66 342 113 SRX2999540 Unrestricted 0.0 Metagenome 3300029839 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35390 Beijing Genomics Institute (BGI) 3300029839 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 107751436 147077 107 0 143 0 0.0 Metagenome 3300071091 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt-Chequamegon, Wisconsin, USA - STEI_021-O-20170705-COMP-DNA1 3300071091 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 2698953 9265 77 4 113 10 0.0 Metagenome 3300022699 *Microbiome Permanent Draft Carpinteria Salt Marsh Metagenomes 2014 to 2017 Sediment microbial communities from hypersaline pond in Carpinteria, CA, United States - Fall B University of California, Irvine 3300022699 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Aquatic Intertidal zone Marine Sediment Sediment 34.401 -119.534 319831770 348015 117 1 133 4 0.0 Metagenome 3300033548 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE6 DOE Joint Genome Institute (JGI) 3300033548 Metagenome Analysis spades v. 3.13.0 Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 59.997 10.7902 67579259 138478 46 44 79 85 SRX7531717 Unrestricted 53.78 Metagenome 3300014011 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01526 Weill Cornell Medical College 3300014011 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.99 19069570 29694 30 0 25 0 SRX823402 0.0 Metagenome 3300018954 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - early stage, 3 min after wetting v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018954 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Biocrust Soil Unclassified soil 38.712053 -109.695097 376309548 711390 285 9 543 19 0.0 Metagenome 3300046720 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 soil DOE Joint Genome Institute (JGI) 3300046720 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Botanical garden Soil Bulk soil Soil 44.5876 -123.1936 177743459 334314 163 13 324 23 Unrestricted 22.39 Metagenome 3300035121 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 DOE Joint Genome Institute (JGI) 3300035121 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 39.6589 -79.9058 1049933452 2862399 1028 102 1999 178 SRX8289787 Unrestricted 6.76 Metagenome 3300067063 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210617_21_13 DOE Joint Genome Institute (JGI) 3300067063 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 469825985 710442 234 91 334 115 Unrestricted 0.0 Metagenome 3300055012 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_160928.NP2 DOE Joint Genome Institute (JGI) 3300055012 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 1007086172 2210614 631 128 944 247 Restricted 0.0 Metagenome 3300029083 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 181_12M Beijing Genomics Institute (BGI) 3300029083 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 53618331 67685 55 1 89 0 ERX490977 0.0 Metagenome 3300042048 *Microbiome Permanent Draft Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - Dsc4_c19.1 Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042048 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1247 -89.1411 844603096 869301 2 9 4 12 SRX5234784 0.0 Metagenome 3300026939 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A5-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026939 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 26580529 89342 109 4 177 8 SRX1990532 Unrestricted 0.0 Metagenome 3300049505 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MC18 DOE Joint Genome Institute (JGI) 3300049505 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 19824258 57200 93 2 177 3 Unrestricted 23.19 Metagenome 3300039784 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_009-M-20140327-COMP-DNA1 Argonne National Laboratory 3300039784 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 36510369 103484 59 7 108 8 ERX2133950 0.0 Metagenome 3300012021 *Microbiome Permanent Draft Terrestrial microbial communites from a soil warming plot in Okalahoma, USA Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T1 Georgia Institute of Technology 3300012021 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial 34.975667 -97.519 430348090 1341379 108 3 252 11 SRX352034 0.0 Metagenome 3300011863 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00667 Weill Cornell Medical College 3300011863 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.82 -73.93 45902388 71100 28 0 44 0 SRX822634 0.0 Metagenome 3300060650 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Healy, Denali National Park, Alaska, USA - HEAL_048-O-20210622-comp-1 DOE Joint Genome Institute (JGI) 3300060650 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Terrestrial soil 63.875088 -149.210438 1849185817 2957021 363 64 567 98 Unrestricted 23.16 Metagenome 3300022855 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #935 DOE Joint Genome Institute (JGI) 3300022855 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 137224766 265380 140 0 262 0 SRX4397209 Unrestricted 11.22 Metagenome 3300040449 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 032_R1_022417 University of Maryland 3300040449 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.19838333 24.964875 3758827 9590 8 0 22 1 0.0 Metagenome 3300048087 *Microbiome Permanent Draft Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA - 6_s_sep_JRB_CZO DOE Joint Genome Institute (JGI) 3300048087 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dawsonfairbanks@email.arizona.edu Dawson Fairbanks No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.88299428 -106.5342526 452981495 800700 176 15 326 19 Unrestricted 17.58 Metagenome 3300020313 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_A100001037 (ERX556055-ERR599061) CEA Genoscope 3300020313 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 23.4217 37.2517 215499355 558812 347 4 516 18 0.0 Metagenome 3300040571 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_003-M-7-21-20140116-GEN-DNA1 Argonne National Laboratory 3300040571 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 2197322 6410 21 3 32 3 ERX2133935 0.0 Metagenome 3300042968 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-416 Genome Quebec 3300042968 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 52.244992 -103.94665 1291790895 3005050 379 75 589 139 0.0 Metagenome 3300005959 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypoxic/sulfidic aquatic microbial communities from Monarch Geyser, Yellowstone National Park, USA - MG (SPAdes) v1 (version 2) DOE Joint Genome Institute (JGI) 3300005959 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, jim.fredrickson@pnnl.gov; binskeep@montana.edu Natasha Ivanova, Jim Fredrickson; William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hypoxic/sulfidic aquatic 44.376 -110.69 76306907 147621 28 0 40 0 SRX2553563 Unrestricted 0.0 Metagenome 3300031365 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - SW1601-220 DOE Joint Genome Institute (JGI) 3300031365 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.722 -70.891 395915879 740630 341 3 533 6 SRX5358987 Unrestricted 14.81 Metagenome 3300003243 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-D DOE Joint Genome Institute (JGI) 3300003243 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 373602 1206 23 5 51 8 SRX2575241 Unrestricted 0.0 Metagenome 3300006341 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT236_2_0770m University of Hawaii 3300006341 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 914465921 1961451 1308 63 1840 75 0.0 Metagenome 3300048069 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - EG-14_pre-inc (version 2) DOE Joint Genome Institute (JGI) 3300048069 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3533 19.0466 132194077 253323 178 5 328 12 Restricted 0.0 Metagenome 3300011906 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00695 Weill Cornell Medical College 3300011906 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.83 -73.94 57782091 91950 23 0 39 3 SRX822662 0.0 Metagenome 3300036794 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in New South Wales, Australia - Pf_6 DOE Joint Genome Institute (JGI) 3300036794 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil -34.5 150.0 1307776196 2240501 436 57 658 81 SRX8385013 Unrestricted 16.0 Metagenome 3300050330 *Microbiome Permanent Draft Metagenomes from benzene-degrading nitrate-reducing cultures Lab enriched sediment microbial communities from hydrocarbon-contaminated retail site, Toronto, Canada - FeSD_GB hmsp Genome Quebec 3300050330 Metagenome Analysis Spades v. 3.14.1 Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Lab enrichment Anaerobic media Defined media Unclassified sediment 43.6535 -79.3839 321663777 530760 96 0 175 0 0.0 Metagenome 3300026705 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A1-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026705 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 15435654 52985 91 2 163 4 SRX1991154 Unrestricted 0.0 Metagenome 3300004236 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 73_LOW10 DOE Joint Genome Institute (JGI) 3300004236 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 71846113 162127 34 0 56 0 SRX2720791 Unrestricted 0.0 Metagenome 3300045516 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Cordillera ecozone, Canada - Lake 13-569 Genome Quebec 3300045516 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 63.685626 -136.161694 877505049 1980254 466 182 763 285 0.0 Metagenome 3300005685 *Microbiome Permanent Draft Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia Enhanced biological phosphorus removal bioreactor viral communities from the University of Queensland, Australia - SBR4-V92007 Phage Sequencing University of Queensland 3300005685 Metagenome Analysis CLC 6.0 Released per Connor Skennerton (Sep 15, 2015) No Yes c.skennerton@gmail.com Connor Skennerton No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor lab-scale EBPR bioreactor -27.49999 153.012098 8859581 18749 8 4 10 3 0.0 Metagenome 3300026093 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_DCM_ad_71m_LV_A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026093 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 320390238 698334 258 18 489 33 SRX2776939 Unrestricted 0.0 Metagenome 3300024220 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLU5 DOE Joint Genome Institute (JGI) 3300024220 Metagenome Analysis spades v. 3.11.1 Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 49.0448 13.618 108804082 267298 147 65 290 107 SRX4456546 Unrestricted 10.06 Metagenome 3300049446 *Microbiome Permanent Draft Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA - 6_d_sep_JRB_CZO DOE Joint Genome Institute (JGI) 3300049446 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dawsonfairbanks@email.arizona.edu Dawson Fairbanks No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.88299428 -106.5342526 1142847770 1953319 351 9 575 13 Unrestricted 15.77 Metagenome 3300002017 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot12-1 3300002017 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 10884646 62024 161 7 263 12 0.0 Metagenome 3300011226 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01306 Weill Cornell Medical College 3300011226 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.88 -73.83 39107158 62775 17 0 22 0 SRX823246 0.0 Metagenome 3300028212 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS379 with 0.1UM filter - spades JGI facility at Oak Ridge National Laboratory 3300028212 Metagenome Analysis Spades v. 3.11.1 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 12428386 26660 9 5 17 6 0.0 Metagenome 3300027874 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027874 Metagenome Analysis spades v. 3.11.1 Yes Yes cpan@ou.edu Chongle Pan No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 9.1086 -79.8436 1367041725 3344901 511 15 954 24 SRX2779536 Unrestricted 0.0 Metagenome 3300024900 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 123_LOW14 (SPAdes) DOE Joint Genome Institute (JGI) 3300024900 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 28910231 40835 24 0 22 0 SRX2721594 Unrestricted 0.0 Metagenome 3300013116 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 103m, 2.7-0.2um, replicate b Georgia Genomics Facility 3300013116 Metagenome Analysis IDBA 1.1 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 417893305 539290 293 22 377 28 0.0 Metagenome 3300002366 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 18MAY2010 deep hole epilimnion ns DOE Joint Genome Institute (JGI) 3300002366 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 30017881 76682 50 6 79 15 SRX1988684 Unrestricted 0.0 Metagenome 3300061138 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IF8SW PMA-treated Jet Propulsion Laboratory, California Institute of Technology 3300061138 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 70605190 101482 10 6 14 14 SRX2249346, SRX2249347, SRX3808534, SRX3808524 0.0 Metagenome 3300017443 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_22AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017443 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 280914566 505124 48 84 68 114 SRX3926901 Unrestricted 8.91 Metagenome 3300070504 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Environmental Research Center, Maryland, USA - SERC_044-M-20170711-COMP-DNA1 Battelle Memorial Institute 3300070504 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 38.890803 -76.553986 5.51-5.6 3748255 12475 35 3 49 6 0.0 Metagenome 3300028778 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142 DOE Joint Genome Institute (JGI) 3300028778 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92045766 -106.94845279 1002542785 2542833 530 29 1067 46 SRX5354686 Unrestricted 11.28 Metagenome 3300014563 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS45_24 University of Hohenheim 3300014563 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 104934089 177030 73 0 138 0 0.0 Metagenome 3300029175 *Microbiome Permanent Draft Infant fecal microbial communities from Pittsburgh, USA Infant fecal microbial communities from Pittsburgh, USA - NECEvent2014_6_7 Banfield Lab, University of California, Berkeley 3300029175 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant fecal 40.4308 -79.9598 50031511 62878 96 0 104 0 0.0 Metagenome 3300019861 *Microbiome Permanent Draft Metagenomes from methanogenic benzene-degrading cultures Lab enriched sediment microbial communities from oil refinery in Oklahoma, USA - DGG1A 1 University of Toronto 3300019861 Metagenome Analysis MEGAHIT with sensitive setting 139801 Yes Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Engineered Artificial ecosystem Contaminated soil Soil microcosm Hydrocarbon anaerobic enrichment culture 36.0 -97.0 256333046 383706 145 4 207 6 0.0 Metagenome 3300042362 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME22Sep2017-rr0820 DOE Joint Genome Institute (JGI) 3300042362 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 717487131 1084519 322 67 427 112 Unrestricted 15.76 Metagenome 3300042740 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - E_c7.2 Re-assembly Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042740 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1237 -89.1404 992840460 898508 4 10 6 15 SRX5234781 0.0 Metagenome 3300045023 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Plains ecozone, Canada - Lake 04-575 Genome Quebec 3300045023 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 67.381817 -134.040849 1081948021 2587992 500 116 861 224 0.0 Metagenome 3300037207 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 711 S-2-M DOE Joint Genome Institute (JGI) 3300037207 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 777196524 1327964 246 9 389 12 SRX8146358 Unrestricted 14.65 Metagenome 3300061654 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0121 Microbiome Insights 3300061654 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 152975761 212433 82 6 114 13 0.0 Metagenome 3300044232 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T80 S DOE Joint Genome Institute (JGI) 3300044232 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7514 -64.3594 305463155 736354 45 0 69 0 Unrestricted 43.65 Metagenome 3300005512 *Microbiome Draft Saline water and sediment microbial community from Etoliko Lagoon, Greece Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water DOE Joint Genome Institute (JGI) 3300005512 Metagenome Analysis SPADES v3.5.0 Released on PI's approval Yes Yes nnivanova@lbl.gov, NNIvanova@lbl.gov Natasha Ivanova, Natalia Ivanova No Environmental Aquatic Saline Non-marine Saline and Alkaline Epilimnion Saline water and sediment 38.4825 21.315 579631545 1059580 423 3 629 14 0.0 Metagenome 3300021081 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo DOE Joint Genome Institute (JGI) 3300021081 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified groundwater sediment 38.9208 -106.9484 .32 1039358662 2462420 607 7 1179 20 SRX4020878 Unrestricted 17.78 Metagenome 3300009904 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S5 University of New South Wales 3300009904 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 39192823 69357 8 10 19 14 0.0 Metagenome 3300043417 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from North Fork Caspar Creek, Ft. Bragg, California, USA - nfkcasparcreek_2019_sw_WHONDRS-S19S_0069 DOE Joint Genome Institute (JGI) 3300043417 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 39.3623 -123.7348 106358733 206568 246 41 397 86 Unrestricted 31.64 Metagenome 3300009442 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519 DOE Joint Genome Institute (JGI) 3300009442 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 682369889 1262784 568 98 819 173 SRX2999685 Unrestricted 0.0 Metagenome 3300002514 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - ETNP_6_85 DOE Joint Genome Institute (JGI) 3300002514 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 18.92 -104.89 455633632 1019327 4 2 8 2 SRX2557420 Unrestricted 0.0 Metagenome 3300031912 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031912 Metagenome Analysis spades v. 3.12.0 Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Unclassified Soil 18.321 -65.8172 4795510246 10041758 1111 43 2039 61 SRX5313696, SRX3604197 Unrestricted 0.0 Metagenome 3300035166 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 9_7.5_N_12_3 DOE Joint Genome Institute (JGI) 3300035166 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1863 -2.2145 1543019185 3844040 380 0 640 0 SRX8233764 Unrestricted 7.61 Metagenome 3300035639 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_1_30_6 mgh University of Alberta 3300035639 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 64271861 79138 31 0 41 0 0.0 Metagenome 3300001337 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring microbial streamer communities from Conch Spring, Yellowstone National Park, USA - CON_C DOE Joint Genome Institute (JGI) 3300001337 Metagenome Analysis Yes Yes binskeep@montana.edu, binskeep@montana.edu; jim.fredrickson@pnnl.gov William Inskeep, William P. Inskeep; Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Alkaline Hot spring 44.376 -110.69 62828840 161063 41 1 39 0 SRX3316453 Unrestricted 0.0 Metagenome 3300056681 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.3W.6 SIP fraction DOE Joint Genome Institute (JGI) 3300056681 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 137614351 250057 55 0 75 0 Unrestricted 18.3 Metagenome 3300028794 *Microbiome Permanent Draft Soil and ectomycorrhiza microbial communities from Populus trichocarpa stands in riparian zones in the Pacific Northwest, United States Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM DOE Joint Genome Institute (JGI) 3300028794 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Plants Unclassified Roots Unclassified ectomycorrhiza 46.6992 -120.899 2518841307 3992599 561 100 910 171 SRX5650770 Unrestricted 25.84 Metagenome 3300039108 *Microbiome Permanent Draft Atacama calcite ignimbrite endoliths Calcite rock endolithic microbial communities from the Atacama desert, Chile - Valle de la Luna, E1 Genomics Resource Center - University of Maryland 3300039108 Metagenome Analysis IDBA v. 1.0 released by JGI data releasing policy No Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified calcite rocks -22.9116667 -68.2475 217648248 284107 63 0 94 0 0.0 Metagenome 3300048584 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Sediment microbial communities from freshwater Prado Wetlands in Corona, California, USA - ZJ_Prado_40 DOE Joint Genome Institute (JGI) 3300048584 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Wetlands Freshwater Sediment Sediment 33.919031 -117.617686 1936739656 2711651 558 232 818 347 Unrestricted 20.21 Metagenome 3300038705 *Microbiome Permanent Draft Coralloid root microbial communities from various locations in Chiapas, Mexico Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Langebio Cinvestav 3300038705 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Host-associated Plants Unclassified Roots Unclassified Coralloid root 16.02611 -93.5991666 57248430 79207 29 0 35 1 0.0 Metagenome 3300030439 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces viral communities from healthy individual in Boston, USA - MG100109 University of Michigan 3300030439 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 42.36 -71.06 3209927 7091 8 0 19 0 0.0 Metagenome 3300027898 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027898 Metagenome Analysis spades v. 3.11.1 Yes Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment watersheds 41.1289 -78.4195 2034497722 4954745 1021 276 1900 464 SRX2745724 Unrestricted 0.0 Metagenome 3300059691 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2019-0038 DOE Joint Genome Institute (JGI) 3300059691 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.75777778 -83.34444444 582803493 1432647 250 124 486 205 Unrestricted 0.0 Metagenome 3300003448 *Microbiome Permanent Draft Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S15-SC02C 3300003448 Metagenome Analysis released per JGI data releasing policy No Yes julie.champagne@cnrc-nrc.gc.ca Julie Champagne No Environmental Aquatic Neritic zone/Coastal water Marine Sediment Marine sediment 53.6667 -129.1333 29204521 112093 25 2 52 1 0.0 Metagenome 3300032038 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Bovine rumen microbial communities from UC Davis, California, United States - 1_2617_0518 DOE Joint Genome Institute (JGI) 3300032038 Metagenome Analysis spades v. 3.12.0 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen 38.5357 -121.7593 2338251921 4936823 3085 42 4782 50 SRX5813454 Unrestricted 16.1 Metagenome 3300028070 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T25 DOE Joint Genome Institute (JGI) 3300028070 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 205404100 322518 85 9 125 13 SRX8128126, SRX8128125 Unrestricted 0.0 Metagenome 3300036778 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Eucalyptus forests in New South Wales, Australia - Eu_10 DOE Joint Genome Institute (JGI) 3300036778 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Tropical forest Soil Bulk soil soil -34.5 150.0 1741981228 2851095 352 74 591 105 SRX8383181 Unrestricted 19.11 Metagenome 7000000082 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159207311 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000082 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 75678192 127446 0 0 0 0 0.0 Metagenome 3300011450 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00953 Weill Cornell Medical College 3300011450 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -74.01 10999743 14265 9 0 14 0 SRX822915 0.0 Metagenome 3300026732 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A4-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300026732 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 19341892 65310 89 0 149 0 SRX1991116 Unrestricted 0.0 Metagenome 3300013180 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100454 University of Pennsylvania 3300013180 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 53663843 109969 30 3 33 3 SRX756544 0.0 Metagenome 7000000276 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 706846339 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000276 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 72299973 142631 0 0 0 0 0.0 Metagenome 3300025074 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - JTO16cm metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025074 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; wswingley@niu.edu Ramunas Stepanauskas; Wesley Swingley No Environmental Aquatic Creek Freshwater Unclassified Freshwater 41.6655 -87.5437 13-14 7346705 17702 10 5 14 7 SRX2526871 Unrestricted 0.0 Metagenome 3300043538 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 321-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043538 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9533 -107.0667 1618266582 3890203 775 51 1411 78 Unrestricted 7.69 Metagenome 3300041008 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - RDC-3_at_5-6_cm Genome Quebec 3300041008 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.80159 -73.41443 939747712 2170941 796 9 1695 14 0.0 Metagenome 3300022072 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3) (version 3) DOE Joint Genome Institute (JGI) 3300022072 Metagenome Analysis spades v. 3.11.1-check Yes Yes chenf@umces.edu; bcampb7@clemson.edu Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.12 -75.25 204670864 496149 46 6 81 5 SRX3786004, SRX3786005, SRX2838768 Unrestricted 0.0 Metagenome 3300056807 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 S1 1-5 (version 2) DOE Joint Genome Institute (JGI) 3300056807 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Permafrost Peat soil 68.353288 19.047562 292609701 335161 78 2 81 2 Restricted 16.98 Metagenome 3300025790 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLC_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025790 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.197102 -122.010033 153508804 312994 157 1 281 3 SRX7142766 Unrestricted 0.0 Metagenome 3300021197 *Microbiome Permanent Draft Coastal marine water viral communities from Plymouth station L4, Western English Channel, United Kingdom Coastal marine water viral communities from Plymouth station L4, Western English Channel, United Kingdom - L4_A1 University of Exeter 3300021197 Metagenome Analysis SPAdes v3.11 released by JGI data releasing policy No Yes btemperton@gmail.com Ben Temperton No Environmental Aquatic Coastal Marine Unclassified Coastal Marine water 50.15 -4.13 49698305 60911 0 0 0 0 0.0 Metagenome 3300045580 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from White River, Indiana, USA - NASQAN2011_177 DOE Joint Genome Institute (JGI) 3300045580 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.4897 -87.55 636120706 1456608 573 258 957 452 Unrestricted 0.0 Metagenome 3300001459 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from the Cayman Rise, Cayman Islands Hydrothermal vent plume microbial communities from the Mid Cayman Rise - All Sites - lt1k 3300001459 Metagenome Analysis Velvet + MetaVelvet at multiple Kmers released by JGI data releasing policy No Yes Gregory Dick, Sunit Jain No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 18.35 -81.85 198169809 718137 757 57 1198 76 0.0 Metagenome 3300019468 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 3 Autonomous University of Barcelona 3300019468 Metagenome Analysis SPAdes 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 2330571 4249 4 0 5 0 0.0 Metagenome 3300008277 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763820215 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008277 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 24343219 45454 21 0 30 0 0.0 Metagenome 3300003189 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment Column7K7-90 454 Life Sciences 3300003189 Metagenome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.342219 40.479289 6-8 0 0 0 0 0 0 0.0 Metagenome 3300011261 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_4, 0.02 Toyama Prefectural University 3300011261 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Sediment marine 37.36023 137.9591 199751284 484554 67 20 125 27 0.0 Metagenome 3300005752 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS856 Marine Biological Laboratory 3300005752 Metagenome Analysis Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow marine hydrothermal vent 6.66 54579746 71114 6 0 8 0 0.0 Metagenome 3300001824 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM36, ROCA_DNA073_0.2um_10g 3300001824 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River plume Marine Plankton Marine plankton 4.8818 -51.3608 19123216 39698 13 4 27 16 0.0 Metagenome 3300024456 *Microbiome Permanent Draft Vaginal microbial communities from lab mice Vaginal microbial communities from lab mice with HSV-2 infection, Madrid, Spain - C5, stage 2 Polytechnic University of Valencia 3300024456 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Vagina Reproductive system Unclassified mice vagina 40.4191094 -3.6725753 893804 1405 0 0 0 0 0.0 Metagenome 3300040704 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_001-M-20130709-COMP-DNA1 Argonne National Laboratory 3300040704 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 1022555 2870 24 4 33 6 ERX2134022 0.0 Metagenome 3300002321 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP12-I5 3300002321 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300043145 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8ST15 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043145 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 30203527 85722 121 13 173 25 SRX8379683 Unrestricted 12.48 Metagenome 3300002754 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C43A7_35 DOE Joint Genome Institute (JGI) 3300002754 Metagenome Analysis Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 47873157 111633 134 23 216 50 SRX1990987 Unrestricted 0.0 Metagenome 3300012317 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100249 University of Pennsylvania 3300012317 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12981389 32167 21 0 34 0 SRX756652 0.0 Metagenome 3300012946 *Microbiome Permanent Draft Guam Dysideidae Sponge Holobiont Metagenomes Dysideidae sponge tissue microbial communities from Anae Island reef, Guam, USA - SP12 SP12a_idba_062615 University of California, San Diego, Scripps Institute of Oceanography 3300012946 Metagenome Analysis IDBA-UD v 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton Yes 28319100, 32576248 Host-associated Porifera Unclassified Unclassified Unclassified sponge tissue 13.446391 144.682388 117026220 111405 11 4 17 5 SRX1844526 0.0 Metagenome 3300003167 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Maryland, USA - DAQMD-021 DOE Joint Genome Institute (JGI) 3300003167 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 19166657 39834 32 6 35 16 SRX2770401 Unrestricted 0.0 Metagenome 3300003841 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 DOE Joint Genome Institute (JGI) 3300003841 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 86164129 130864 73 1 99 2 SRX2770684 Unrestricted 0.0 Metagenome 3300013004 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG DOE Joint Genome Institute (JGI) 3300013004 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.099 -89.405 1858090146 3782454 984 194 1524 299 SRX3565942 Unrestricted 12.7 Metagenome 2038011002 *Microbiome Permanent Draft Coalbed water microbial communities from New Mexico, USA Coalbed microbial communities from New Mexico, USA - 343 Virginia Polytechnic Institute and State University 2038011002 Metagenome Analysis released per JGI data release policy No Yes biswarup@vt.edu Biswarup Mukhopadhyay No Environmental Aquatic Groundwater Freshwater Coalbed water Coalbed water 36.728056 -108.220833 319498438 828011 145 0 292 0 0.0 Metagenome 3300011534 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00736 Weill Cornell Medical College 3300011534 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.98 22683888 33770 13 0 25 0 SRX822703 0.0 Metagenome 3300030357 *Microbiome Permanent Draft Broiler chicken associated microbial communities from animal house in Bologna, Italy Broiler chicken cecum microbial communities from animal house in Bologna, Italy - XT31; Group C+FT Food safety laboratory 3300030357 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Birds Large intestine Digestive system Ceca Broiler chicken cecum 44.3027 11.21504 18912737 37754 46 0 90 0 ERX1378689 0.0 Metagenome 3300007262 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159551223 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007262 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 26877920 33090 23 0 29 0 0.0 Metagenome 3300006804 *Microbiome Permanent Draft Agricultural soil microbial communities from Utah and Georgia to study Nitrogen management Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 DOE Joint Genome Institute (JGI) 3300006804 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jeanette.norton@usu.edu Jeanette Norton No Environmental Terrestrial Agricultural land Soil Unclassified Agricultural soil 33.8834 -83.4195 2283804923 5370002 2492 189 4339 368 SRX2924236 Unrestricted 0.0 Metagenome 3300036379 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T50 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036379 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 129836511 197621 63 7 87 9 SRX4415314, SRX7705671 Unrestricted 0.0 Metagenome 3300009600 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in West Virginia, USA - MSEEL M_DM5 DOE Joint Genome Institute (JGI) 3300009600 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 39.602 -79.976 10699275 19532 42 0 66 0 SRX2996525 Unrestricted 0.0 Metagenome 3300012066 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Georgia, USA - TSGA053 MetaG DOE Joint Genome Institute (JGI) 3300012066 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 32.545 -82.122 90804403 169684 44 136 68 271 SRX3539520 Unrestricted 0.0 Metagenome 3300046028 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater viral communities from Lake Mendota, Wisconsin, United States - ME_2020-07-24_23.5m_Virus_AB DOE Joint Genome Institute (JGI) 3300046028 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 996900003 1950882 246 16 367 19 Unrestricted 27.55 Metagenome 3300013462 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100292 University of Pennsylvania 3300013462 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 7098216 19859 16 0 16 0 SRX756609 0.0 Metagenome 3300027491 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepB_8d DOE Joint Genome Institute (JGI) 3300027491 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 171791810 296923 121 13 196 27 SRX5245210 Unrestricted 13.48 Metagenome 3300070936 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_043-M-20180927-COMP-DNA1 3300070936 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 848275 2743 22 2 36 2 0.0 Metagenome 3300070771 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_043-M-20200602-COMP-DNA1 3300070771 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 33077236 102809 99 20 169 27 0.0 Metagenome 3300007775 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_D2_MG DOE Joint Genome Institute (JGI) 3300007775 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Terrestrial Wetlands Soil Unclassified Soil 37.4965 -122.1329 719889604 1309874 540 4 957 14 SRX2523926 Unrestricted 0.0 Metagenome 3300027572 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_08_M0_20 (SPAdes) DOE Joint Genome Institute (JGI) 3300027572 Metagenome Analysis spades v. 3.11.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 310257463 674029 348 48 505 68 SRX2570592 Unrestricted 0.0 Metagenome 3300026763 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A4-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026763 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 23804205 76409 73 1 139 0 SRX1991275 Unrestricted 0.0 Metagenome 3300051651 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_CSTR_024 (version 2) DOE Joint Genome Institute (JGI) 3300051651 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 53907017 54300 46 0 43 0 SRX12727596, SRX12727597, SRX12727598, SRX12727599 Restricted 0.0 Metagenome 3300028589 *Microbiome Permanent Draft Soil microbial communities from agricultural site in Penn Yan, New York, United States Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1 DOE Joint Genome Institute (JGI) 3300028589 Metagenome Analysis spades v. 3.11.1 Yes Yes dbuckley@cornell.edu Dan Buckley No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.673 -77.032 3176956862 8176328 1543 33 2796 45 SRX5246691 Unrestricted 26.54 Metagenome 3300048799 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-P1(3) 20-24 DOE Joint Genome Institute (JGI) 3300048799 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.355 19.0437 767712510 1139621 176 5 323 13 Restricted 13.16 Metagenome 3300026051 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026051 Metagenome Analysis spades v. 3.11.1 released Yes Yes jzz0026@lbl.gov; sgtringe@lbl.gov Jinglie Zhou; Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.049904 -121.765358 80484790 215358 190 3 352 4 SRX7182417 Unrestricted 0.0 Metagenome 3300070802 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_008-M-20190730-COMP-DNA1 3300070802 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 9999305 32754 53 7 111 8 0.0 Metagenome 3300027860 *Microbiome Permanent Draft Host-associated microbial communities from peat moss Sphagnum species from Minnesota, USA Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027860 Metagenome Analysis spades v. 3.11.1 Yes Yes joel.kostka@biology.gatech.edu Joel Kostka No Host-associated Plants Unclassified Peat moss Unclassified Host-associated 47.5028 -93.4828 1700481443 2960785 551 149 797 242 SRX3006922 Unrestricted 0.0 Metagenome 3300031111 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Marine sediment archaeal communities from Little Sippewissett salt marsh, Falmouth, MA, United States - SSM-Form-13 DOE Joint Genome Institute (JGI) 3300031111 Metagenome Analysis spades v. 3.12.0 Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 2534440475 5399410 1813 6 3194 7 SRX5356222 Unrestricted 44.51 Metagenome 3300064946 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 746 in Carstairs, Alberta, Canada - S00JY_0332 Microbiome Insights 3300064946 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.29325538 -114.0540409 117434926 173789 57 2 100 1 0.0 Metagenome 3300025387 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH20Aug07 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025387 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 130254138 280543 81 10 109 26 SRX2565417 Unrestricted 0.0 Metagenome 3300033697 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from gas well in Marcellus Shale, West Virginia, United States - MIP3H_12202015 Ohio State University 3300033697 Metagenome Analysis IDBA-UD v. 1.1.1 No Yes rebdaly@colostate.edu Rebecca Daly No Environmental Terrestrial Fracking water Deep subsurface Unclassified Fracking Water 39.6017 -79.9761 14930391 14539 5 0 2 0 0.0 Metagenome 3300042816 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Rumen-fistulated moose microbial communities from Alaska, USA - LMS_cellobiose_enrichment NMDC pilot DOE Joint Genome Institute (JGI) 3300042816 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes kwrighton@gmail.com Kelly Wrighton No Host-associated Mammals Stomach Digestive system Rumen fluid Rumen-fistulated moose 61.566367 -149.2538247 338528895 504904 475 4 607 3 SRX2752462 0.0 Metagenome 3300040230 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 071_R1_022417 University of Maryland 3300040230 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.58746 19.03558 7892145 15312 37 3 51 6 0.0 Metagenome 3300035235 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P4_June_2018_10m DOE Joint Genome Institute (JGI) 3300035235 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 48.65 -126.6666 671820026 1496514 287 48 503 73 SRX8196370 Unrestricted 12.83 Metagenome 3300034686 *Microbiome Permanent Draft Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_15_08-R1 DOE Joint Genome Institute (JGI) 3300034686 Metagenome Analysis metaspades v. 3.13.0 Yes Yes ziels@mail.ubc.ca Ryan Ziels No Engineered Bioreactor Unclassified Anaerobic Unclassified sludge 51.9691 5.6654 464365507 749136 407 0 570 0 SRX7542613 Unrestricted 28.84 Metagenome 3300036944 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Shale gas microbial communities from Fort St. John, British Columbia, Canada - UGR 1-1 DOE Joint Genome Institute (JGI) 3300036944 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back shale gas 56.0 -122.0 522816160 942292 313 76 435 130 SRX8356733 Unrestricted 19.08 Metagenome 3300014505 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 87_B Beijing Genomics Institute (BGI) 3300014505 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 16143643 18894 12 2 10 2 ERX491317 0.0 Metagenome 3300036402 *Microbiome Permanent Draft Forest soil microbial communities from Eldorado National Forest, California, USA Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_5.1 DOE Joint Genome Institute (JGI) 3300036402 Metagenome Analysis metaspades v. 3.13.0 Yes Yes ndove7@gmail.com Nicholas Dove No Environmental Terrestrial Temperate forest Soil Bulk soil soil 38.9694 -120.5005 3628378435 8079853 1923 226 3177 319 SRX8240221 Unrestricted 11.15 Metagenome 3300020308 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000530 (ERX556085-ERR599046) CEA Genoscope 3300020308 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -30.1495 -43.2486 113369491 335949 260 19 428 29 0.0 Metagenome 3300025369 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE28Sep08 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025369 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 105880844 217193 67 25 121 40 SRX2565286 Unrestricted 0.0 Metagenome 3300021440 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 3-17 MG DOE Joint Genome Institute (JGI) 3300021440 Metagenome Analysis spades v. 3.11.1-check Yes Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9301 -83.5517 395725713 1047087 987 75 1712 139 SRX4035461 Unrestricted 12.35 Metagenome 3300025555 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqB_D1 (SPAdes) DOE Joint Genome Institute (JGI) 3300025555 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.197227 -122.010124 157819134 318057 181 0 278 2 SRX7225233 Unrestricted 0.0 Metagenome 3300006148 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t14_698M_inflammed - microbial_metagenome University of Texas Southwestern Medical Center 3300006148 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 192988207 353754 170 0 216 0 0.0 Metagenome 3300034137 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 39SMC DOE Joint Genome Institute (JGI) 3300034137 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological biocrust 34.3778 -117.6098 296406330 722622 497 25 917 31 SRX7621463 Unrestricted 9.6 Metagenome 3300049563 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - TCR_050217 DOE Joint Genome Institute (JGI) 3300049563 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Unclassified Soil Grasslands soil 41.8858 -89.3241 619666661 1479487 393 17 729 31 Unrestricted 0.0 Metagenome 3300008886 *Microbiome Permanent Draft Microbial communities associated with unicellular green alga Micrasterias crux-melitensis, Germany - (MZCH: 98) Microbial communities associated with unicellular green alga Micrasterias crux-melitensis, Germany - (MZCH: 98) HPI Heinrich-Pette-Institut 3300008886 Metagenome Analysis IDBA_UD1.1.1 https://www.frontiersin.org/articles/10.3389/fmicb.2017.01941/full No Yes wolfgang.streit@uni-hamburg.de Wolfgang Streit No Host-associated Algae Unclassified Green algae Unclassified Micrasterias crux-melitensis (MZCH 98) associated 53.560155 9.859606 268162588 351377 53 3 86 9 0.0 Metagenome 3300031244 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N3_2 DOE Joint Genome Institute (JGI) 3300031244 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 233198762 552061 609 71 1070 106 SRX5801132, SRX5801131 Unrestricted 0.0 Metagenome 3300013433 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100108 University of Pennsylvania 3300013433 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 5500635 14553 11 1 13 1 SRX756722 0.0 Metagenome 3300011805 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01006 Weill Cornell Medical College 3300011805 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.59 -73.81 23506471 34913 28 1 26 0 SRX822968 0.0 Metagenome 3300028567 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant14 DOE Joint Genome Institute (JGI) 3300028567 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1150727 -123.147 845277830 1432861 790 10 1236 15 SRX5248466 Unrestricted 35.23 Metagenome 3300017566 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS375 with 0.1UM filter JGI facility at Oak Ridge National Laboratory 3300017566 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 33878647 84095 19 10 38 9 0.0 Metagenome 3300043207 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_9 (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043207 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 262603046 442805 73 1 115 2 SRX8240585 Unrestricted 72.33 Metagenome 3300015216 *Microbiome Permanent Draft Microbial mat communities from high arctic lakes Freshwater microbial mat microbial communities from Canadian High Arctic Lake 9K, Kuujjuarapik, Canada - Sample L9Kb Laval University 3300015216 Metagenome Analysis IDBA_UD released by Adrien Vigneron No Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified microbial mat 55.275009 -77.758484 1055569398 4354582 1019 132 2098 159 0.0 Metagenome 2007427000 *Microbiome Finished Groundwater microbial communities from Oak Ridge Integrated Field Research Center, Tennessee, that are pristine and uranium contaminated Uranium contaminated groundwater from Oak Ridge Integrated Field Research Center, Tennessee DOE Joint Genome Institute (JGI) 2007427000 Metagenome Analysis Paracel Genome Assembler No Yes jzhou@ou.edu Zhou, Jizhong Yes 20182523 Environmental Aquatic Groundwater Freshwater Contaminated Groundwater 36.11569 -84.248657 3.7 106573620 170521 51 0 46 0 0.0 Metagenome 3300042678 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A51 University of California, Davis 3300042678 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 208482740 587888 296 4 539 12 0.0 Metagenome 3300021602 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L222-5m DOE Joint Genome Institute (JGI) 3300021602 Metagenome Analysis spades v. 3.11.1-check Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.697 -93.722 1181292648 2464145 832 26 1447 46 SRX3984576 Unrestricted 14.8 Metagenome 3300042333 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME30Apr2013-rr0766 DOE Joint Genome Institute (JGI) 3300042333 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 507919685 812309 194 90 256 116 Unrestricted 20.46 Metagenome 3300027258 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1562A-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027258 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2105 -123.7516 115517783 264254 150 25 272 31 SRX2753753 Unrestricted 0.0 Metagenome 3300006489 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764487809 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006489 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 29109650 56890 45 0 64 0 0.0 Metagenome 3300022877 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T0 DOE Joint Genome Institute (JGI) 3300022877 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 206676089 347636 133 24 171 31 SRX4415313, SRX7705672 Unrestricted 0.0 Metagenome 3300029706 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35564 Beijing Genomics Institute (BGI) 3300029706 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 200643597 257723 162 0 227 0 0.0 Metagenome 3300071053 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_004-M-20190109-COMP-DNA1 3300071053 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 75269512 212592 84 6 150 5 0.0 Metagenome 2170459000 *Microbiome Permanent Draft Polar desert microbial communities from McMurdo Dry Valleys, Antarctica soil microbial communities from McMurdo Dry Valleys (Taylor Valley), Antarctica University of New Mexico 2170459000 Metagenome Analysis Newbler default released per JGI data release policy No Yes cvesbach@unm.edu Cristina Takacs-Vesbach No Environmental Terrestrial Unclassified Soil Permafrost Polar desert 77.735556 162.328611 8.65 1663228 4008 22 0 34 0 0.0 Metagenome 3300007014 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 765701615 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007014 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 6883570 20820 22 0 41 2 SRX024891 0.0 Metagenome 3300026176 *Microbiome Permanent Draft Anaerobic reactors microbiome study Activated sludge microbial communities from lab. scaled anaerobic digester in Belvaux, Luxembourg - ACS0-13 University of Luxembourg 3300026176 Metagenome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 49.506216 5.943617 255133128 317020 73 0 76 0 0.0 Metagenome 3300044263 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - DOSP6-9-5-19 DOE Joint Genome Institute (JGI) 3300044263 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.3714 -120.7122 299495725 612331 234 97 408 125 Restricted 9.94 Metagenome 3300041526 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Bulk soil microbial community from Lincoln, Canterbury, New Zealand - BS18_9 MetaG AgResearch, New Zealand, Mosgeil 3300041526 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Environmental Terrestrial Unclassified Soil Agricultural land Dairy farm pasture soil -43.648506 172.343549 915591238 2192498 250 25 968 60 0.0 Metagenome 3300005143 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Hot Lake Consortium UCC-LE DOE Joint Genome Institute (JGI) 3300005143 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 124176687 221446 203 0 311 2 SRX2518459 Unrestricted 0.0 Metagenome 3300016480 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water catchment in Singapore - WC_Site 2b, Oct Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016480 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 1.35 103.87 107525592 147900 22 4 24 2 0.0 Metagenome 3300000496 *Microbiome Permanent Draft Lentic microbial communities from Lake Waban, Wellesley MA, that are anoxygenic and photosynthetic Lentic microbial communities from Wellesley MA, that are anoxygenic and photosynthetic, sample Photosynthetic Consortia 720nm Marine Biological Laboratory 3300000496 Metagenome Analysis No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Lentic Freshwater Littoral zone Lentic 42.2876 -71.30117 32285121 59770 17 0 58 0 0.0 Metagenome 3300069425 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_004-M-20130726-COMP-DNA1 re-annotation Argonne National Laboratory 3300069425 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 12198786 37983 46 11 80 19 0.0 Metagenome 3300046506 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere DOE Joint Genome Institute (JGI) 3300046506 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5879 -123.194 629203055 948656 223 37 341 66 Unrestricted 35.92 Metagenome 3300049011 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - A20_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049011 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 260416576 589606 386 17 777 22 Unrestricted 0.0 Metagenome 3300039844 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_060-O-20170706-COMP-DNA1 Battelle Memorial Institute 3300039844 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 315739388 775239 257 24 437 49 0.0 Metagenome 3300009499 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from Anholt, Denmark to uncover new lineages of life (NeLLi) - Anholt_01485 metaG DOE Joint Genome Institute (JGI) 3300009499 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes eaeloefadrosh@lbl.gov, EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Oceanic Marine Sediment Deep subsurface 56.62 11.67 964627805 1675452 682 9 1145 13 SRX3203408 Unrestricted 0.0 Metagenome 3300029157 *Microbiome Permanent Draft Infant fecal microbial communities from Pittsburgh, USA Infant fecal microbial communities from Pittsburgh, USA - NECEvent2014_8_6 Banfield Lab, University of California, Berkeley 3300029157 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant fecal 40.4308 -79.9598 25813015 30774 54 0 62 0 0.0 Metagenome 3300025715 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC030_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025715 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.3 -88.15 533668724 1002866 427 3 631 3 SRX2338798 Unrestricted 0.0 Metagenome 3300037145 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 P3 1-5 DOE Joint Genome Institute (JGI) 3300037145 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0472 919491409 1804436 304 29 575 66 SRX8138665 Unrestricted 8.48 Metagenome 3300005696 *Microbiome Finished Mouse gut microbial communities from Washington University in St Louis, Missouri, USA, of lean and obese mice Mouse gut microbial communities from Washington University in St Louis, Missouri, USA - Obese Mouse 2 Gut Metagenome Washington University in St. Louis 3300005696 Metagenome Analysis Newbler No Yes jgordon@wustl.edu Human Gut Community Users Yes 17183312 Host-associated Mammals Large intestine Digestive system Cecum Mouse gut 38.63055 -90.194664 1841347 3579 0 0 0 0 0.0 Metagenome 7000000601 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 706846339 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000601 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 3126427 3095 0 0 0 0 0.0 Metagenome 2044078008 *Microbiome Permanent Draft Mixed alcohol bioreactor microbial communities from Texas A&M University Mixed alcohol bioreactor microbial communities from Texas A and M University - 55C, Day 16 v1 DOE Joint Genome Institute (JGI) 2044078008 Metagenome Analysis Newbler released based on JGI ITS No Yes tgentry@ag.tamu.edu Terry Gentry Yes 22761870 Engineered Biotransformation Unclassified Mixed alcohol bioreactor Unclassified Mixed alcohol bioreactor 30.620833 -96.341111 49174050 109265 39 0 64 0 Unrestricted 0.0 Metagenome 3300044826 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Orco River, San Benigno Canavese, Piedmont, Italy - orco_2019_sw_WHONDRS-S19S_0096 DOE Joint Genome Institute (JGI) 3300044826 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 45.2476 7.8043 414947653 659769 447 192 764 318 Unrestricted 18.02 Metagenome 3300010271 *Microbiome Permanent Draft Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 6_20_20_110_A2 metaG DOE Joint Genome Institute (JGI) 3300010271 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes Steve.Brown@lanzatech.com Steven Brown Yes 30202438 Engineered Bioreactor Anaerobic Semi-continuous Digestate Switchgrass degrading 43.726 -72.1429 236514132 402793 579 1 839 3 SRX3290056 Unrestricted 0.0 Metagenome 3300020709 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 01JUL2008 hypolimnion DOE Joint Genome Institute (JGI) 3300020709 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 99511045 198542 87 7 145 13 Unrestricted 0.0 Metagenome 3300035328 *Microbiome Permanent Draft Cathode biofilm microbial communities from solar microbial fuel cell (MFC) in Washington, DC, USA Cathode biofilm microbial communities from solar microbial fuel cell (MFC) in Washington, DC, USA - Biofilm MCL Naval Research Laboratory 3300035328 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Industrial production Unclassified Engineered product Unclassified Cathode biofilm 38.823126 -77.017947 72628004 98226 26 0 42 0 0.0 Metagenome 3300051022 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA River water microbial communities from Olympic Peninsula, Washington, USA - W_SEK2_D15 DOE Joint Genome Institute (JGI) 3300051022 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Aquatic River Freshwater Unclassified River water 48.165 -124.245 183366205 348549 215 42 422 75 Unrestricted 118.0 Metagenome 3300019925 *Microbiome Permanent Draft Hypersaline water viral communities from Tuz Lake and Camalt? Saltern, Turkey Non-marine hypersaline water viral communities from Tuz Lake, Turkey - water sample University of Alicante 3300019925 Metagenome Analysis IDBA_1.1.1 PRE_correction released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Non-marine hypersaline water 38.7627 33.3486 11582318 33955 86 0 0 0 0.0 Metagenome 3300057017 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M2P_78_80 DOE Joint Genome Institute (JGI) 3300057017 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0099406 -81.5672344 1351578422 2081667 608 2 961 0 Unrestricted 16.04 Metagenome 3300025768 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP1 (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025768 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; duane.moser@dri.edu Ramunas Stepanauskas; Duane Moser No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Thermal springs 36.96 -116.72 78726572 237516 126 7 243 3 SRX2948733 Unrestricted 0.0 Metagenome 3300026622 *Microbiome Permanent Draft Bioremediated contaminated groundwater microbial communities from North Railroad Avenue plume (NRAP), New Mexico Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-00 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026622 Metagenome Analysis spades v. 3.11.1 Yes Yes NNIvanova@lbl.gov; rebecca.reiss@nmt.edu Natalia Ivanova; Rebecca Reiss Yes 27980706 Environmental Aquatic Groundwater Deep subsurface Contaminated Bioremediated contaminated groundwater 35.992 -106.0797 14040690 15869 12 1 13 3 SRX2554384 Unrestricted 0.0 Metagenome 3300008996 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747 DOE Joint Genome Institute (JGI) 3300008996 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 464475095 913897 364 10 571 28 SRX2753582 Unrestricted 8.64 Metagenome 3300037538 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR10_22 DOE Joint Genome Institute (JGI) 3300037538 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Crustal Fluids crustal fluids 47.7534 -127.7638 256821319 616911 385 46 660 89 SRX9096391 Unrestricted 35.56 Metagenome 3300040381 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_013-M-20160728-COMP-DNA1 Battelle Memorial Institute 3300040381 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 5813018 17871 37 6 48 5 0.0 Metagenome 3300044468 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - I_P72_A50 DOE Joint Genome Institute (JGI) 3300044468 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Pasture Soil Agricultural land Soil -10.1625 -62.8363 471376921 1362422 513 14 988 20 Unrestricted 7.09 Metagenome 3300060284 *Microbiome Permanent Draft Sediment microbial communities from the PNNL SFA Hanford 300 Area, Columbia River, WA, USA Sediment microbial communities from in situ POM Reactor at the PNNL SFA Hanford 300 Area, Columbia River, WA, USA - Ashed with POM Time Zero DOE Joint Genome Institute (JGI) 3300060284 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes eroden@geology.wisc.edu Eric Roden No Environmental Aquatic River Freshwater Sediment Sediment 46.467778 -119.464444 1592468491 2050735 369 78 516 113 Unrestricted 30.68 Metagenome 3300047548 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Virginia, United States - lewisrun_2019_sw_WHONDRS-S19S_0014 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047548 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 39.0944 -77.9815 282910828 482844 353 49 599 62 Unrestricted 0.0 Metagenome 3300033823 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 S3 30-34 DOE Joint Genome Institute (JGI) 3300033823 Metagenome Analysis spades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3531 19.0476 312479643 515813 102 1 173 4 SRX8138172, SRX8138173 Unrestricted 0.0 Metagenome 3300004822 *Microbiome Permanent Draft Hypersaline lake viral communities from Bras del Port, Santa Pola, Alicante, Spain Hypersaline lake viral communities from Bras del Port, Santa Pola, Alicante, Spain - CR30 Febr14 dirigido University of Alicante 3300004822 Metagenome Analysis IDBA 1.1.1 Pre_correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Hypersaline lake 38.19317 -0.59268 11039219 35392 1 0 0 0 0.0 Metagenome 3300013325 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01312 Weill Cornell Medical College 3300013325 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.8 -73.91 11524950 18731 7 0 14 0 SRX823252 0.0 Metagenome 3300015331 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_20JUN2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015331 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 201259685 343551 8 103 8 171 SRX3923030 Unrestricted 7.68 Metagenome 3300047135 *Microbiome Permanent Draft Lab enriched sediment microbial communities from Lake Constance, Konstanz, Germany Lab enriched sediment microbial communities from Lake Constance, Konstanz, Germany - anoxic Eurofins MWG Operon 3300047135 Metagenome Analysis SPAdes v. 3.15.3 sabrina.borusak@uni-konstanz.de Yes Yes david.schleheck@uni-konstanz.de David Schleheck No Environmental Aquatic Lake Freshwater Sediment Sediment 47.7 9.1921 15121096 15076 2 0 2 0 0.0 Metagenome 3300011832 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metalplastic -P00212 Weill Cornell Medical College 3300011832 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface City subway metal/plastic 40.75 -73.98 39577023 63402 16 0 34 0 SRX822191 0.0 Metagenome 3300002128 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 DOE Joint Genome Institute (JGI) 3300002128 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tiedjej@msu.edu James Tiedje No Environmental Terrestrial Unclassified Soil Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 338771765 953040 677 4 1123 13 SRX1989946, SRX1989947, SRX1989948, SRX1989949 Unrestricted 0.0 Metagenome 3300045692 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_2_D DOE Joint Genome Institute (JGI) 3300045692 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 137676302 166809 75 1 97 3 Unrestricted 119.09 Metagenome 3300012796 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - DID2878_E24_Xylan MG DOE Joint Genome Institute (JGI) 3300012796 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie Yes 29545786 Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 48127918 70168 42 0 70 0 SRX3564815 Unrestricted 0.0 Metagenome 3300027453 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-D (SPAdes) DOE Joint Genome Institute (JGI) 3300027453 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.33 31838534 93132 100 5 171 9 SRX1991428 Unrestricted 0.0 Metagenome 3300006502 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 764588959 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006502 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; snayfach@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 164448925 208849 148 2 204 3 0.0 Metagenome 3300042694 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A63 University of California, Davis 3300042694 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 257229721 723726 366 10 632 22 0.0 Metagenome 3300017521 *Microbiome Permanent Draft Bras del Port Febrero 2014 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CM2 Febrary 2014 University of Valencia 3300017521 Metagenome Analysis idba.1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Non-marine hypersaline water 38.1922 -0.5918 57169991 197403 1 0 0 0 0.0 Metagenome 3300022400 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Garden Lake, Rottnest Island (WA - Australia) - GL1GP3 JM87 AGRF 3300022400 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.995604 115.536873 39607101 78812 48 2 81 6 0.0 Metagenome 3300007517 *Microbiome Permanent Draft Freshwater microbial communities from lake liftoff mats and glacier meltwater in Antarctica Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-02 (megahit assembly) DOE Joint Genome Institute (JGI) 3300007517 Metagenome Analysis MEGAHIT v.1.0.3 Yes Yes slonczewski@kenyon.edu Joan Slonczewski No Environmental Aquatic Ice Freshwater Liftoff microbial mat Freshwater -77.605 163.163 2081948152 4258764 1099 39 1613 60 SRX2753509 Unrestricted 26.11 Metagenome 3300001522 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from Tui Malila, Pacific Ocean, of black smokers Hydrothermal vent plume microbial communities from Mariner/Tui Malila, Pacific Ocean, of black smokers 3300001522 Metagenome Analysis MetaVelvet 1.2.02 released by JGI data releasing policy No Yes akarthik@umich.edu Karthik Anantharaman No Environmental Aquatic Hydrothermal vents Marine Black smokers Hydrothermal vent plume -20.064428 -176.171974 222169584 385075 18 15 82 28 0.0 Metagenome 3300040492 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Mid-Atlantic, VA, USA - SCBI_008-M-20170718-COMP-DNA1 Battelle Memorial Institute 3300040492 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89292 -78.1395 3683000 11247 30 1 65 5 0.0 Metagenome 3300025940 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025940 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 3610217189 8579788 2040 113 3432 164 SRX2740367 Unrestricted 0.0 Metagenome 3300070835 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_001-O-20170721-COMP-DNA1 3300070835 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 54935374 167167 100 11 190 16 0.0 Metagenome 3300042880 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Jun2010-rr0336 DOE Joint Genome Institute (JGI) 3300042880 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 877101461 1226422 230 37 299 60 Unrestricted 34.24 Metagenome 3300007831 *Microbiome Permanent Draft Clones from fosmidial library constructed using mangrove sediment Mangrove sediment microbial communities from Bertioga, Sao Paulo, Brazil - Clones from fosmid library, F6_contig2 Molecular Research LP (MR DNA) 3300007831 Metagenome Analysis IDBA released per JGI data release policy No Yes luc.g.cabral@gmail.com Luc?lia Cabral, Lucelia Cabral No Environmental Aquatic Unclassified Sediment Unclassified sediment -23.8553 -46.1394 28225 24 0 0 0 0 0.0 Metagenome 3300012845 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched mosquito-associated microbial communities from UW Madison campus, WI, USA - HID1973M_E6 MG DOE Joint Genome Institute (JGI) 3300012845 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 107974814 152285 98 0 144 0 SRX3564647 Unrestricted 0.0 Metagenome 3300032204 *Microbiome Permanent Draft Microbial communities from the deep biosphere Fracture water microbial communities from Carltonville mines, South Africa - TT107FW240811 re-assembly The Marine Biological Laboratory 3300032204 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Fracking water Deep subsurface Unclassified Fracture water -26.4168 27.427222 104116421 204747 115 2 170 6 SRX745164 0.0 Metagenome 3300044609 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME26Jun2009-rr0947 DOE Joint Genome Institute (JGI) 3300044609 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 916205841 1430651 314 74 433 80 Unrestricted 22.81 Metagenome 3300041013 *Microbiome Permanent Draft Pisolithus fungal host associated microbial communities from geothermal ecosystems of United States and New Zealand Pisolithus host associated microbial endosymbiont communities from Rotokawa, Taupo Volcanic Zone, New Zealand - Piso I NZ Test Test Metagenome 1 DOE Joint Genome Institute (JGI) 3300041013 Metagenome Analysis Megahit v. 1.1.4 released by JGI data releasing policy No Yes cullings1@earthlink.net Ken Cullings No Host-associated Fungi Unclassified Fruiting body Unclassified fungus fruiting body -38.6309 176.1885 372353609 688522 123 35 233 55 0.0 Metagenome 3300014532 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 521_12M Beijing Genomics Institute (BGI) 3300014532 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 82153491 109769 41 0 69 0 ERX491167 0.0 Metagenome 3300053170 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S40_A_D45 hydrophobic DOE Joint Genome Institute (JGI) 3300053170 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 425357030 619608 156 15 172 10 Restricted 0.0 Metagenome 3300035202 *Microbiome Permanent Draft Seawater and sediment microbial communities from various locations Seawater microbial communities from eastern tropical North Pacific Ocean - AMALJGI-DNA-2 DOE Joint Genome Institute (JGI) 3300035202 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bbw@princeton.edu Bess Ward No Environmental Aquatic Oceanic Marine Unclassified seawater 18.6893 -104.4164 1278663065 2521727 853 60 1456 114 SRX8296528 Unrestricted 15.9 Metagenome 3300025060 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Gongxiaoshe hot spring, China to study Microbial Dark Matter (Phase II) - GXS 110809B (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025060 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; brian.hedlund@unlv.edu Ramunas Stepanauskas; Brian Hedlund No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring 25.4401 98.4408 7.29 122052849 189416 102 0 140 0 SRX2753917 Unrestricted 0.0 Metagenome 3300028640 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Ala DOE Joint Genome Institute (JGI) 3300028640 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 328519170 556663 253 1 390 0 SRX5281753 Unrestricted 23.39 Metagenome 3300028323 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIRHL14 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300028323 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5563 78.1877 3767990 4645 3 0 4 0 SRX2747204 Unrestricted 0.0 Metagenome 3300055531 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.17W.10 SIP fraction DOE Joint Genome Institute (JGI) 3300055531 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 208962955 378498 79 3 116 1 Unrestricted 14.95 Metagenome 3300008255 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t DOE Joint Genome Institute (JGI) 3300008255 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 623287251 1261000 619 11 1014 20 SRX3200017 Unrestricted 0.0 Metagenome 3300028064 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_28AUG2017_LD1 DOE Joint Genome Institute (JGI) 3300028064 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 167995447 318764 48 69 57 112 SRX5345907 Unrestricted 15.67 Metagenome 3300036589 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5ST15 DOE Joint Genome Institute (JGI) 3300036589 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 244833364 596787 369 23 679 68 SRX8379494 Unrestricted 6.28 Metagenome 3300007106 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila falleni male 3 gut Cornell University 3300007106 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy Yes Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila falleni male adult gut 43.025606 -77.572811 108151772 261567 75 16 126 23 0.0 Metagenome 3300003781 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 DOE Joint Genome Institute (JGI) 3300003781 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 267910931 451267 173 0 267 0 SRX2770677 Unrestricted 0.0 Metagenome 3300025644 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_200m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025644 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 436120008 772013 302 0 474 1 Unrestricted 0.0 Metagenome 3300049327 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC2 DOE Joint Genome Institute (JGI) 3300049327 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 34677254 87886 92 2 199 4 Unrestricted 42.32 Metagenome 3300048882 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from Gulf of California, Mexico - CTD-FK190211-03-2004m-0.1 DOE Joint Genome Institute (JGI) 3300048882 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 26.01663 -111.00697 324674662 523091 125 3 179 8 Unrestricted 112.55 Metagenome 3300028402 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Club lake, Antarctica - Metagenome #318 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028402 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5417 78.2467 59163337 106295 34 1 49 1 SRX3241663 Unrestricted 0.0 Metagenome 3300005267 *Microbiome Draft Bankia setacea gill microbial communities from Puget Sound, Washington, USA Bankia setacea gill microbial communities from Puget Sound, Washington, USA - Caecum Enriched DOE Joint Genome Institute (JGI) 3300005267 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes distel@oglf.org Daniel Distel, Dan Distel No Host-associated Mollusca Ceca Digestive system Unclassified Bankia setacea gill 47.85072 -122.33843 37156932 67338 15 1 29 1 Unrestricted 0.0 Metagenome 3300039113 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from Daisy Lake, Ontario, Canada Freshwater lake sediment microbial communities from Daisy Lake, Ontario, Canada - A58 University of Cambridge 3300039113 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 46.27199 -80.52479 26918544 68580 62 3 106 2 0.0 Metagenome 3300069333 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_033-O-20170801-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069333 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 78131648 232409 113 19 221 32 0.0 Metagenome 3300013238 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100523 University of Pennsylvania 3300013238 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 19960986 37457 15 5 36 12 SRX756231 0.0 Metagenome 3300061216 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from National Grasslands LBJ, Texas, USA - CLBJ_006-M-20210506-comp-1 DOE Joint Genome Institute (JGI) 3300061216 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Grasslands Soil Unclassified Terrestrial soil 33.39823 -97.56673 2143172963 3667312 717 27 1283 34 Unrestricted 15.58 Metagenome 3300016671 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Site 228 with 0.8UM filter J. Craig Venter Institute 3300016671 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater -68.4 78.18278 7.29 46391473 114095 82 0 96 0 0.0 Metagenome 3300007757 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_D1_MG DOE Joint Genome Institute (JGI) 3300007757 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Terrestrial Wetlands Soil Unclassified Soil 37.496 -122.1329 360035414 784833 376 7 688 11 SRX2753768 Unrestricted 0.0 Metagenome 3300005814 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS877 Marine Biological Laboratory 3300005814 Metagenome Analysis Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow diffuse flow hydrothermal vent 18.377 -81.798 13669619 16795 0 1 2 1 0.0 Metagenome 3300045245 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_1_D DOE Joint Genome Institute (JGI) 3300045245 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 135281344 160175 85 3 92 2 Unrestricted 73.63 Metagenome 3300005289 *Microbiome Draft Switchgrass rhizosphere microbial communities from Michigan, USA Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) DOE Joint Genome Institute (JGI) 3300005289 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.794771 -84.393804 1893966992 4682308 2374 32 4314 47 Unrestricted 0.0 Metagenome 3300004165 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 57_HOW8 DOE Joint Genome Institute (JGI) 3300004165 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 90565836 194508 63 7 132 9 SRX2720609 Unrestricted 0.0 Metagenome 3300020222 *Microbiome Permanent Draft Freshwater microbial communities from Lake Tanganyika, Tanzania Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015034 Kigoma Deep Cast 250m DOE Joint Genome Institute (JGI) 3300020222 Metagenome Analysis spades v. 3.10.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater lake -4.9054 29.4853 1938736347 3575835 1073 69 1671 119 SRX4820478 Unrestricted 24.88 Metagenome 3300043683 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 438-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043683 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9767 -107.0649 470378860 1266311 442 44 837 60 Unrestricted 7.31 Metagenome 3300002812 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A5-12 DOE Joint Genome Institute (JGI) 3300002812 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 1534833 5055 61 4 111 9 SRX1991272 Unrestricted 0.0 Metagenome 3300015280 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_09MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015280 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 131081267 231027 24 90 32 154 SRX3921974 Unrestricted 9.13 Metagenome 3300042990 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 151-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300042990 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9873 -107.0032 762290621 2028374 602 41 1097 54 Unrestricted 7.26 Metagenome 3300036567 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C2-3C DOE Joint Genome Institute (JGI) 3300036567 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 51716282 168555 158 3 269 7 SRX8816831 Unrestricted 4.09 Metagenome 3300030375 *Microbiome Permanent Draft Nursing home wastewater effluent microbial communities near Freiburg, Germany Downstream nursing home wastewater effluent microbial communities near Freiburg, Germany - C1757 University of Freiburg 3300030375 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Wastewater Hospital wastewater Industrial wastewater Unclassified Downstream nursing home wastewater 48.0 8.0 24595316 42591 60 1 113 1 SRX516605 0.0 Metagenome 3300020444 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100001245 (ERX556114-ERR598980) CEA Genoscope 3300020444 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 31.5319 -159.0668 1138072100 2978172 714 81 1460 154 0.0 Metagenome 3300041561 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_400 MetaG AgResearch, New Zealand, Mosgeil 3300041561 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1581768490 3381693 300 34 1126 52 0.0 Metagenome 7000000508 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765013792 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000508 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 140881499 249063 0 0 0 0 0.0 Metagenome 3300045735 *Microbiome Permanent Draft Sediment microbial communities from various rivers and their estuaries in the United States Sediment microbial communities from Shark River, Florida, United States - BTRS19_Sengupta_7F DOE Joint Genome Institute (JGI) 3300045735 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sg.aditi@gmail.com Aditi Sengupta No Environmental Aquatic River Freshwater Sediment sediment 25.4682 -80.8532 1469436580 2539787 788 18 1479 30 Unrestricted 15.39 Metagenome 3300013748 *Microbiome Permanent Draft Oral microbial communities from fossilized dental plaque from Dalheim, Germany Oral microbial communities from fossilized dental plaque from Dalheim, Germany - S4-Shot-B61-calc University of Oklahoma 3300013748 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skeletonized remains Remains Dental calculus Fossilized dental plaque 51.565093 8.849015 70931852 180241 120 0 240 1 SRX340013 0.0 Metagenome 3300014284 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00196 Weill Cornell Medical College 3300014284 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.6 -74.0 21207160 29192 7 0 9 1 SRX822175 0.0 Metagenome 3300014819 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier in Georgia, USA Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A Georgia Institute of Technology 3300014819 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater 34.21 -83.96 179712845 390963 74 10 150 23 SRX331965 0.0 Metagenome 3300000366 *Microbiome Draft Alkaline sediment microbial communities from Soda lakes and Soda Solonchak soils Alkaline soda soil microbial communities from Kulunda Steppe, Russia - 3KL_010_SOIL DOE Joint Genome Institute (JGI) 3300000366 Metagenome Analysis released based on JGI ITS Yes Yes g.muijzer@uva.nl Gerard Muyzer No Environmental Aquatic Alkaline Non-marine Saline and Alkaline Sediment Alkaline sediment 52.98 82.1 413268194 969041 508 24 910 29 Unrestricted 0.0 Metagenome 3300029031 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 276_12M Beijing Genomics Institute (BGI) 3300029031 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 109103903 123591 91 1 118 0 ERX491063 0.0 Metagenome 3300044992 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_6_F DOE Joint Genome Institute (JGI) 3300044992 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 159751185 199488 99 1 110 2 Unrestricted 86.56 Metagenome 2236876023 *Microbiome Permanent Draft Saline water concentrator pond microbial communities from Bras del Port saltern, Santa Pola, Spain Saline water concentrator pond microbial communities from Bras del Port saltern, Spain - PC6 GATC-Biotech AG, Konstanz, Germany 2236876023 Metagenome Analysis released per JGI data release policy No Yes abf@us.es Ana Fernandez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline water concentrator pond 38.11 -0.36 138001176 261668 161 1 251 1 0.0 Metagenome 3300056972 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M2P_0_1 DOE Joint Genome Institute (JGI) 3300056972 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0099406 -81.5672344 1137066311 1816514 609 14 982 16 Unrestricted 12.68 Metagenome 3300038299 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI146_2018_oct_10m DOE Joint Genome Institute (JGI) 3300038299 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 296140290 568723 219 92 320 156 SRX9401496 Unrestricted 10.45 Metagenome 3300037631 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037631 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.509 -76.198 366256671 876939 2 0 7 0 SRX3197246, SRX3197247 Unrestricted 0.0 Metagenome 3300011193 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 12 - S13.3.50.a - transect 3, age 50 years, surface depth). University of Bristol 3300011193 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes EAEloeFadrosh@lbl.gov; maisie.nash@bristol.ac.uk; ama@envs.au.dk Emiley Eloe-Fadrosh; Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 78.90777778 12.16444444 7.33 4751816 16632 73 3 114 18 0.0 Metagenome 3300043721 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - Rondonia_Forest_2_A100m DOE Joint Genome Institute (JGI) 3300043721 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.134 -62.889 992375357 2562735 333 7 716 12 Unrestricted 9.32 Metagenome 3300043354 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 179-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043354 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.8575 -107.0981 363257278 997473 353 21 696 39 Unrestricted 7.49 Metagenome 3300034176 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17 DOE Joint Genome Institute (JGI) 3300034176 Metagenome Analysis metaspades v. 3.13.0 Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Aquatic Sediment Floodplain Unclassified sediment 38.9229 -106.9499 654647262 1640983 487 23 870 43 SRX7630716 Unrestricted 7.07 Metagenome 3300019742 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_8_MG DOE Joint Genome Institute (JGI) 3300019742 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Microbial mats Freshwater microbial mat 38.7906 -75.1644 170792399 348447 413 47 716 61 SRX3982607 Unrestricted 13.48 Metagenome 3300019360 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaG DOE Joint Genome Institute (JGI) 3300019360 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Groundwater Deep subsurface Cave microbial mat Microbial mat on rocks 19.2894 -155.8119 1023564476 1808083 522 4 882 8 SRX6983897 Unrestricted 25.76 Metagenome 3300011519 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01392 Weill Cornell Medical College 3300011519 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.62 -73.99 18235916 31298 15 0 18 0 SRX823332 0.0 Metagenome 3300042449 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Nov2012-rr0128 DOE Joint Genome Institute (JGI) 3300042449 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 686668191 1043725 259 38 333 49 Unrestricted 22.84 Metagenome 3300002485 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1 DOE Joint Genome Institute (JGI) 3300002485 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.534762 -107.782602 565156482 1360396 928 4 1572 6 SRX1991818 Unrestricted 0.0 Metagenome 3300022313 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL3WBGP3 JM105 AGRF 3300022313 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996531 115.533257 21466147 42677 44 3 59 3 0.0 Metagenome 3300038610 *Microbiome Permanent Draft Oil contaminated soil microbial communities from a military base in Taszar, Hungary Oil contaminated soil microbial communities from a military base in Taszar, Hungary - F4_1 University of Szeged 3300038610 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Unclassified Soil Oil-contaminated Oil contaminated soil 46.37386 17.90063 3185632 6982 7 0 10 0 0.0 Metagenome 3300011646 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00631 Weill Cornell Medical College 3300011646 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.83 -73.93 25679780 44927 16 0 18 0 SRX822598 0.0 Metagenome 3300011358 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01122 Weill Cornell Medical College 3300011358 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.89 17237747 28095 11 0 19 0 SRX823077 0.0 Metagenome 3300048609 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT_PTT1_JUN19_180cm DOE Joint Genome Institute (JGI) 3300048609 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9883 -108.4003 657529016 1307760 511 5 946 7 Restricted 14.05 Metagenome 3300045229 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_5_F DOE Joint Genome Institute (JGI) 3300045229 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 161556206 194953 104 1 113 2 Unrestricted 94.66 Metagenome 3300003623 *Microbiome Permanent Draft Hypersaline viral and bacterial communities from Bras del Port, Santa Pola, Spain Hypersaline viral communities from Bras del Port, Santa Pola, Spain - CR30 Febrero14 septiembre precorrection Lifesequencing S.L. 3300003623 Metagenome Analysis released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline samples 38.192206 -0.591865 940834 2699 2 0 0 0 0.0 Metagenome 3300050014 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 P1 60-64 DOE Joint Genome Institute (JGI) 3300050014 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.047 595333403 862707 299 4 439 6 Restricted 18.19 Metagenome 3300034051 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13May2013-rr0097 DOE Joint Genome Institute (JGI) 3300034051 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1193166982 2338473 421 171 688 265 SRX7622050 Unrestricted 13.42 Metagenome 3300003762 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 DOE Joint Genome Institute (JGI) 3300003762 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 153174510 242367 110 0 165 0 SRX2770682 Unrestricted 0.0 Metagenome 3300003340 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Maryland, USA - DAQMD-023 DOE Joint Genome Institute (JGI) 3300003340 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 24454056 52423 63 10 70 22 SRX2770399 Unrestricted 0.0 Metagenome 3300050233 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Butler, South Dakota, USA - 85_877_SD_DR_0cm_c1_T1_16O DOE Joint Genome Institute (JGI) 3300050233 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 45.27223 -97.8369 502362727 918512 214 1 389 3 Restricted 17.15 Metagenome 3300020699 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 09AUG2007 hypolimnion DOE Joint Genome Institute (JGI) 3300020699 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 76017719 165133 79 5 141 12 Unrestricted 0.0 Metagenome 3300004255 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 103_HOW12 DOE Joint Genome Institute (JGI) 3300004255 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 100493893 214711 50 0 96 0 SRX2721176 Unrestricted 0.0 Metagenome 3300042188 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A3 University of California, Davis 3300042188 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 246066708 694198 324 6 598 8 0.0 Metagenome 3300029143 *Microbiome Permanent Draft Infant fecal microbial communities from Pittsburgh, USA Infant fecal microbial communities from Pittsburgh, USA - NECEvent2014_4_2 Banfield Lab, University of California, Berkeley 3300029143 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant fecal 40.4308 -79.9598 12294850 12106 38 0 38 0 0.0 Metagenome 3300017475 *Microbiome Permanent Draft Bras del Port Febrero 2015 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CR30 Febrary 2015 University of Valencia 3300017475 Metagenome Analysis idba.1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Non-marine hypersaline water 38.1922 -0.5918 28585098 91478 2 0 4 0 0.0 Metagenome 3300012530 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ85 (21.06) DOE Joint Genome Institute (JGI) 3300012530 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.0243 163.9173 615422311 1394326 520 11 982 23 SRX3372534 Unrestricted 0.0 Metagenome 3300024323 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07 DOE Joint Genome Institute (JGI) 3300024323 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 269707401 629060 274 28 511 34 SRX4547504 Unrestricted 9.19 Metagenome 3300013349 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00310 Weill Cornell Medical College 3300013349 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.72 -74.0 35435569 68139 26 2 41 2 SRX822283 0.0 Metagenome 3300070540 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from North Sterling, Colorado, USA - STER_027-M-20160817-COMP-DNA1 Battelle Memorial Institute 3300070540 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Agricultural land Soil Unclassified Terrestrial soil 40.480827 -103.018821 6.84-7.37 1601563 5274 10 3 22 2 0.0 Metagenome 3300026686 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1097 (SPAdes) DOE Joint Genome Institute (JGI) 3300026686 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 10180314 29043 54 0 83 2 SRX1987005 Unrestricted 0.0 Metagenome 3300055154 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_70-s34 day 365 DOE Joint Genome Institute (JGI) 3300055154 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 396792251 635988 170 130 255 145 Unrestricted 108.68 Metagenome 3300003275 *Microbiome Permanent Draft Whitefly associated endosymbiont microbial communities from Neve Yaar, Israel Whitefly Bemisia tabaci associated secondary symbiont microbial communities from Neve Yaar, Israel - sample Cardinium_whitefly 3300003275 Metagenome Analysis released by JGI data releasing policy No Yes itaiopa6@gmail.com Itai Opatovsky No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Whitefly Bemisia tabaci associated 32.708101 35.179264 358242 341 1 0 1 0 0.0 Metagenome 2088090013 *Microbiome Permanent Draft Freshwater sediment microbial communities from Lake Washington, Seattle, USA, for methane and nitrogen cycles Freshwater sediment microbial communities from Lake Washington, Seattle, for methane and nitrogen Cycles - SIP 13Cmethane anaerobic no nitrate v1 DOE Joint Genome Institute (JGI) 2088090013 Metagenome Analysis Newbler released based on JGI ITS No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova Yes 23638358 Environmental Aquatic Lentic Freshwater Sediment Freshwater sediment 47.07 -122.27889 308706277 821124 224 22 406 0 Unrestricted 0.0 Metagenome 3300024944 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 127_HOW14 (SPAdes) DOE Joint Genome Institute (JGI) 3300024944 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 65698508 107185 35 0 48 0 SRX2722000 Unrestricted 0.0 Metagenome 3300048861 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD16 DOE Joint Genome Institute (JGI) 3300048861 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.347657 -119.2808 977974290 1314277 138 59 189 77 Unrestricted 31.54 Metagenome 3300005706 *Microbiome Permanent Draft Freshwater microbial communities from Lake Kinneret, Israel Aquatic microbial communities from Lake Kinneret, Israel - sample 4 Macrogen 3300005706 Metagenome Analysis Unkonwn No Yes beja@tx.technion.ac.il Beja O No Environmental Aquatic Lentic Freshwater Unclassified Freshwater 32.7872 35.6176 42224 47 1 0 1 0 0.0 Metagenome 3300002539 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - site 3 bottle 8 DOE Joint Genome Institute (JGI) 3300002539 Metagenome Analysis Yes Yes blumerschuette@oakland.edu, blumerschuette@oakland.edu; rmkelly@ncsu.edu Sara Blumer-Schuette, Sara Blumer-Schuette; Robert Kelly No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6102 -110.4387 14752731 21318 28 0 36 0 SRX2554487 Unrestricted 0.0 Metagenome 3300070296 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_001-M-20171108-COMP-DNA1 3300070296 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 123182938 333550 116 8 239 9 0.0 Metagenome 3300026137 *Microbiome Permanent Draft Utah desert microbiome from environmental samples near Hanksville, Utah, USA Rock biofilm microbial communities from Utah desert near Hanksville, Utah, USA - IRBC McGill University 3300026137 Metagenome Analysis canu v. 1.7 released by Catherine Maggiori No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Terrestrial Unclassified Soil Desert Rock biofilm 38.41680641 -110.78524736 22379897 26942 12 0 13 0 0.0 Metagenome 3300011759 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00587 Weill Cornell Medical College 3300011759 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.73 -73.99 38871087 55373 18 0 38 0 SRX822554 0.0 Metagenome 3300009768 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC115_MetaG DOE Joint Genome Institute (JGI) 3300009768 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu Yes 28386012 Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 22.28 114.17 808269833 1527693 979 30 1511 47 SRX2339074 Unrestricted 0.0 Metagenome 3300037096 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 P1 20-24 DOE Joint Genome Institute (JGI) 3300037096 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0471 656087581 1162971 203 5 438 12 SRX10078866 Unrestricted 10.35 Metagenome 3300012454 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100634 University of Pennsylvania 3300012454 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8783404 23692 12 2 15 4 SRX756460 0.0 Metagenome 3300030414 *Microbiome Permanent Draft Marine deep subsurface microbial communities from Pacific Ocean near coastal Oregon, USA Marine deep subsurface microbial communities from Pacific Ocean near coastal Oregon, USA - C1H2a Georgia Institute of Technology 3300030414 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Deep subsurface Marine Deep subsurface Marine deep subsurface 44.6 -125.1 32205970 60173 13 0 9 0 SRX1251859 0.0 Metagenome 3300012829 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched pill bug-associated microbial communities from UW Madison campus, WI, USA - HID1972I_E11 MG DOE Joint Genome Institute (JGI) 3300012829 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 101569117 123202 115 2 152 3 SRX3564670 Unrestricted 0.0 Metagenome 3300021792 *Microbiome Permanent Draft Characterization of microbial community from Mariana Back Arc Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Illium_FS922 150_kmer Marine Biological Laboratory 3300021792 Metagenome Analysis IDBA-UD Trembath-Reichert et al. ?Active subseafloor microbial communities from Mariana back-arc venting fluids share metabolic strategies across different thermal niches and taxa?, ISMEJ 2019 No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Hydrothermal vent fluids 18.21359 144.70748 6 1192904262 2121588 930 18 1427 30 0.0 Metagenome 3300005157 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage3 60A DOE Joint Genome Institute (JGI) 3300005157 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8406114 -122.2923487 62709480 109724 168 0 198 0 SRX3195087 Unrestricted 0.0 Metagenome 3300001750 *Microbiome Permanent Draft Marine microbial communities from the Santa Barbara Channel oil seeps Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 1 DOE Joint Genome Institute (JGI) 3300001750 Metagenome Analysis Yes Yes mhess@lbl.gov, mhess@ucdavis.edu Matthias Hess Yes 24958360, 25197496 Environmental Aquatic Oil seeps Marine Unclassified Marine 34.39225 -119.845662 544336013 1136186 530 7 842 9 SRX560108 Unrestricted 0.0 Metagenome 3300025499 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 415-1 deep-092012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025499 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 233111880 510692 260 3 453 5 SRX1987674 Unrestricted 0.0 Metagenome 3300022836 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #421 DOE Joint Genome Institute (JGI) 3300022836 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 173061625 299684 112 13 159 16 SRX4396779 Unrestricted 18.79 Metagenome 3300002820 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G01K2-12 DOE Joint Genome Institute (JGI) 3300002820 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 1961622 6370 71 1 125 3 SRX1991291 Unrestricted 0.0 Metagenome 3300008118 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-100-LTR University of Michigan 3300008118 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7026 -83.2538 8.738 235397464 378676 75 65 102 91 0.0 Metagenome 3300071047 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_027-M-20160825-COMP-DNA1 3300071047 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 2130914 6870 24 2 49 5 0.0 Metagenome 3300029696 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37276 Beijing Genomics Institute (BGI) 3300029696 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 170910001 228305 146 0 228 0 0.0 Metagenome 3300009715 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS2_MetaG DOE Joint Genome Institute (JGI) 3300009715 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 43.77 142.37 760620180 1365862 717 5 1198 12 SRX2338866 Unrestricted 0.0 Metagenome 3300049650 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_A_0_drought DOE Joint Genome Institute (JGI) 3300049650 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 116752171 280159 301 11 568 23 Unrestricted 10.48 Metagenome 3300069449 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_006-M-20160815-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069449 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 3263412 10434 17 1 39 2 0.0 Metagenome 3300044799 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Soil microbial communities from peatland in Alberta, Canada - SB-09-sedgy 80-90 cm DOE Joint Genome Institute (JGI) 3300044799 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4741 -114.8678 585412542 859351 284 2 445 1 Unrestricted 23.51 Metagenome 3300065519 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 791 in Vulcan, Alberta, Canada - S00JY_0049 Microbiome Insights 3300065519 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 50.2910242 -113.1540896 7255754 10748 13 0 30 0 0.0 Metagenome 3300065646 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 823 in Enchant, Alberta, Canada - S00JY_0153 Microbiome Insights 3300065646 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 50.1313992 -112.190483 24037356 36871 39 2 79 2 0.0 Metagenome 3300069571 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_001-M-20140917-COMP-DNA1 re-annotation Argonne National Laboratory 3300069571 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 13833509 43689 30 2 71 3 ERX2134037 0.0 Metagenome 3300001586 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP1649 DOE Joint Genome Institute (JGI) 3300001586 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -5.74 -170.77 53520525 137764 88 0 164 0 SRX1982440 Unrestricted 0.0 Metagenome 3300026914 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN94 (SPAdes) DOE Joint Genome Institute (JGI) 3300026914 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 39.23550963 -121.2836963 11918430 40092 83 3 167 7 SRX3311671, SRX3311670 Unrestricted 0.0 Metagenome 3300010946 *Microbiome Permanent Draft Wastewater viral communities and vesicles from water purifying plant in Alicante,Spain Wastewater viral communities and vesicles from water purifying plant in Alicante,Spain - replicate C1 Autonomous University of Barcelona 3300010946 Metagenome Analysis SPAdes-3.8.1-Linux released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Engineered Wastewater Unclassified Industrial wastewater Unclassified wastewater 38.34 -0.48 65981760 147646 1 0 2 1 0.0 Metagenome 3300010317 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Zodletone spring, Oklahoma to study Microbial Dark Matter (Phase II) - Zodletone Spring source 2m metaG DOE Joint Genome Institute (JGI) 3300010317 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; mostafa@okstate.edu Ramunas Stepanauskas; Mostafa Elshahed No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 405129816 958808 400 4 747 3 SRX2525191 Unrestricted 0.0 Metagenome 3300038686 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Realigned salt marsh sediment microbial communities from Fingringhoe Range, United Kingdom - W FRRM 2A University of York 3300038686 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Realigned salt marsh sediment 51.83015 0.9503 50226399 98116 105 0 162 0 0.0 Metagenome 3300021141 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion v4 DOE Joint Genome Institute (JGI) 3300021141 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 313553945 631211 184 42 334 64 Unrestricted 0.0 Metagenome 3300004886 *Microbiome Permanent Draft Ecklonia radiata associated microbial communities from Long Bay, Malabar Australia Ecklonia radiata associated microbial communities from Long Bay, Malabar Australia - H2 University of New South Wales 3300004886 Metagenome Analysis idba-ud released per JGI data release policy Yes Yes z.qiu@student.unsw.edu.au Zhiguang Qiu No Host-associated Algae Unclassified Unclassified Unclassified Ecklonia radiata associated 64670487 111420 49 21 71 35 0.0 Metagenome 3300055373 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.18C.9 SIP fraction DOE Joint Genome Institute (JGI) 3300055373 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 314312369 610154 200 22 324 36 Unrestricted 15.63 Metagenome 3300021214 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge Cinachyra sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - cg27is 200bp-microeukaryotes University of New South Wales 3300021214 Metagenome Analysis IDBA-UD released by JGI data releasing policy Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Cinachyra sp. (marine sponge) -9.8241 150.825833 854556 1641 0 0 0 0 0.0 Metagenome 3300012606 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100507 University of Pennsylvania 3300012606 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 19912186 42831 40 14 74 21 SRX756247 0.0 Metagenome 3300042704 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from Lucky Strike-Montsegur hydrothermal vent, Atlantic Ocean - BazoSym_LS-MS_1_1048F Re-assembly Max Planck Institute for Marine Microbiology 3300042704 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 37.28806 -32.27557 8783893 12122 4 1 4 1 ERX3367193 0.0 Metagenome 3300000754 *Microbiome Draft Soil microbial communities from Kansas Great Prairie, USA, amended with BrdU Amended soil microbial communities from Kansas Great Prairies, USA - acetate Total DNA F2.4TB DOE Joint Genome Institute (JGI) 3300000754 Metagenome Analysis released based on JGI ITS Yes Yes maude.david@yahoo.fr, janet.jansson@pnnl.gov Maude David, Janet Jansson No Environmental Terrestrial Loam Soil Grasslands Soil 39.100992 -96.608258 30174236 99902 183 4 327 11 Unrestricted 0.0 Metagenome 3300009060 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_D2_MG DOE Joint Genome Institute (JGI) 3300009060 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Soil 37.4973 -122.1295 390551898 742708 390 7 736 8 SRX3203253 Unrestricted 0.0 Metagenome 3300003897 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 m-RNA DAY 03 University of Sao Paulo, Virginia Bioinformatics Institute 3300003897 Metagenome Analysis SoapDeNovo 2 released per PI's request No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 46628007 98627 32 47 62 125 0.0 Metagenome 3300037129 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 C-2-S DOE Joint Genome Institute (JGI) 3300037129 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3544 19.048 882262569 1817222 531 10 877 11 SRX8861428 Unrestricted 7.65 Metagenome 7000000142 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 160421117 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000142 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 66690254 91178 0 0 0 0 0.0 Metagenome 3300027447 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G08K4-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300027447 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 7163836 21865 63 3 119 5 SRX1991267 Unrestricted 0.0 Metagenome 3300060446 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210611_15_13 DOE Joint Genome Institute (JGI) 3300060446 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 556698475 814004 235 159 296 220 Unrestricted 35.79 Metagenome 3300043766 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Para, Brazil - P24 DOE Joint Genome Institute (JGI) 3300043766 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -3.3141 -54.9097 853134970 2034553 528 5 879 5 Unrestricted 7.5 Metagenome 3300009940 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R12 University of New South Wales 3300009940 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 122111335 201966 80 3 121 9 0.0 Metagenome 3300013664 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00931 Weill Cornell Medical College 3300013664 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.93 16052812 20243 5 0 9 0 SRX822894 0.0 Metagenome 3300001058 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP0901 DOE Joint Genome Institute (JGI) 3300001058 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -33.55 39.89 41948386 101664 84 0 157 0 SRX1982924 Unrestricted 0.0 Metagenome 3300020286 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000470 (ERX556011-ERR599131) CEA Genoscope 3300020286 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -31.056 4.6606 132344070 333350 130 21 252 23 0.0 Metagenome 3300006840 *Microbiome Permanent Draft Anaerobic bioreactor microbial communities from different locations in Luxembourg Anaerobic bioreactor microbial communities from Canach, Luxembourg Centre de Recherche Public Gabriel Lippmann 3300006840 Metagenome Analysis CLC genomics Workbench released per JGI data release policy No Yes magdalena.calusinska@list.lu Magdalena Calusinska No Engineered Bioreactor Marine sediment inoculum Continuous culture Unclassified anaerobic reactor 49.609581 6.325797 7.2 204023851 238733 96 0 133 0 0.0 Metagenome 3300030038 *Microbiome Permanent Draft Postmortem human lung microbial community from chest tissue of mummy in Hungary Postmortem human lung microbial community from chest tissue of mummy in Hungary - Body 68 University of Birmingham 3300030038 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Mummified remains Remains Lungs Postmortem human lung 47.7833 19.1333 23811423 36709 30 4 26 6 SRX242843 0.0 Metagenome 3300007743 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Dobu ""bubble"", cg4ads 200bp-25jan2016" University of New South Wales 3300007743 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Cinachyra sp. (marine sponge) -9.73665 150.867667 76692163 141783 32 2 41 5 0.0 Metagenome 3300029267 *Microbiome Permanent Draft Seawater microbial communities from Yap Trench, western Pacific Ocean Seawater microbial communities from Yap Trench, western Pacific Ocean - 37I-Yap-CTD02-150m 2000_bp Novogene 3300029267 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes newsun1987@126.com Xinxu Zhang No Environmental Aquatic Ocean trench Marine Unclassified seawater 9.87 138.5 956272483 1032683 282 4 331 6 0.0 Metagenome 3300003969 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Enrichment cultures from Harmful Algal Blooms in Lake Erie, HABS-00-39861 University of Michigan 3300003969 Metagenome Analysis IDBA-UD v1.1.1 released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lentic Freshwater Unclassified Freshwater -77.611214 163.119356 61068471 69652 59 0 60 0 0.0 Metagenome 3300070955 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The Jones Center At Ichauway, Georgia, USA - JERC_048-M-20190730-COMP-DNA1 3300070955 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 12450610 39571 56 9 112 18 0.0 Metagenome 3300007951 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 158499257 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007951 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 8237110 19453 10 0 23 0 0.0 Metagenome 3300043085 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver proximal colon microbial communities from Maple Ridge, British Columbia, Canada - Beaver3Prox.Colon1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043085 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Proximal colon proximal colon 49.18 -122.54 127630166 211845 181 7 216 6 SRX8345899 Unrestricted 62.58 Metagenome 3300056633 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.18W.13 SIP fraction DOE Joint Genome Institute (JGI) 3300056633 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 92705735 193481 83 49 136 66 Unrestricted 8.15 Metagenome 3300026299 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_9/17/2007_ DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026299 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 297842407 447663 129 7 171 8 SRX2713111 Unrestricted 0.0 Metagenome 3300070667 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Bartlett Experimental Forest, New Hampshire, USA - BART_003-O-20170614-COMP-DNA1 3300070667 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 3016707 9110 27 8 53 9 0.0 Metagenome 3300009644 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_13_10 DOE Joint Genome Institute (JGI) 3300009644 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 435666608 814387 253 7 439 15 SRX3003641 Unrestricted 0.0 Metagenome 3300023503 *Microbiome Permanent Draft Marine microbial mats from Loihi Seamount, Hawaii, USA Marine microbial mat from Loihi Seamount, Hawaii, USA - Marker 39 Individual Assembly Western Washington University 3300023503 Metagenome Analysis metaSPAdes v. 3.10.0 Metagenomes associated with bioRxiv doi:10.1101/722066 Yes Yes mcallis@uw.edu; hfullerton@gmail.com; cmoyer@hydro.biol.wwu.edu Sean McAllister; Heather Fullerton; Craig Moyer No Environmental Aquatic Hydrothermal vents Marine Microbial mats Marine 18.902 -155.257 149019750 183096 72 0 103 0 0.0 Metagenome 3300070689 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_013-O-20200915-COMP-DNA1 3300070689 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 14797173 46978 40 7 86 11 0.0 Metagenome 3300027168 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF037 (SPAdes) DOE Joint Genome Institute (JGI) 3300027168 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 79541193 224380 39 3 85 11 SRX2014388 Unrestricted 0.0 Metagenome 3300000514 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC3D99 University of Sao Paulo 3300000514 Metagenome Analysis released per PI's request No Yes almsilva@iq.usp.br Aline Maria da Silva Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651079 -46.620668 18198123 33515 40 1 82 1 0.0 Metagenome 3300047641 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BT26-07_D100 (version 2) DOE Joint Genome Institute (JGI) 3300047641 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3555 19.0492 144539683 202835 52 8 79 13 Restricted 0.0 Metagenome 3300043173 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_4000m_C2_20cm25cm (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043173 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.1948 -122.0383 516915056 842333 307 6 485 4 SRX8383000 Unrestricted 38.51 Metagenome 3300011952 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00064 Weill Cornell Medical College 3300011952 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.65 -73.96 37953194 56061 13 5 33 4 SRX822065 0.0 Metagenome 3300024435 *Microbiome Permanent Draft Vaginal microbial communities from lab mice Vaginal microbial communities from lab mice with HSV-2 infection, Madrid, Spain - C2, day 3 Polytechnic University of Valencia 3300024435 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Vagina Reproductive system Unclassified mice vagina 40.4191094 -3.6725753 14622 26 0 0 0 0 0.0 Metagenome 3300040740 *Microbiome Permanent Draft Groundwater microbial communities from well in Rigaud, Quebec, Canada Groundwater microbial communities from well in Rigaud, Quebec, Canada - V10P02 University of Quebec 3300040740 Metagenome Analysis IDBA v. 3 released by JGI data releasing policy No Yes karine.villeneuve12@gmail.com Karine villeneuve No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 45.4794 -74.302 408206487 1539720 1134 34 2098 92 0.0 Metagenome 3300040362 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONZ_043-M-20170711-COMP-DNA1 Battelle Memorial Institute 3300040362 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.10077 -96.56309 6488672 19092 72 5 114 6 0.0 Metagenome 3300017628 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - BK11-02 University of Michigan 3300017628 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.64643 -85.50279 18290995 22015 13 0 18 0 0.0 Metagenome 3300029814 *Microbiome Permanent Draft Human fecal microbial communities from healthy and liver cirrhosis patients in Hangzhou, China Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-85_Run4 Zhejiang University 3300029814 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 30.0 120.0 141920095 197351 99 0 161 0 0.0 Metagenome 3300003987 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2 DOE Joint Genome Institute (JGI) 3300003987 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov, sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe, Susannah Tringe; Jinglie Zhou No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.05246563 -121.76914021 720769548 2099559 748 4 1585 6 SRX7142763 Unrestricted 0.0 Metagenome 3300029289 *Microbiome Finished Production water microbial communities from petroleum reservoir, Carmopolis, SE, Brazil - Ap2 Production water microbial communities from petroleum reservoir, Carmopolis, SE, Brazil - Ap2 Federal University of Rio Grande do Norte 3300029289 Metagenome Analysis Geneious v. 10.2.3 released by JGI data releasing policy No Yes lfagnez@ufrnet.br Lucymara Agnez-Lima No Environmental Terrestrial Unclassified Oil reservoir Unclassified production water -10.6453 -36.9891 1526661738 5296028 11624 2 20727 34 0.0 Metagenome 3300048826 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 S3 10-14 DOE Joint Genome Institute (JGI) 3300048826 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3532 19.0475 530670639 709539 128 6 174 8 Restricted 22.51 Metagenome 3300027115 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A3-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300027115 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 21808038 74360 96 4 178 3 SRX1990516 Unrestricted 0.0 Metagenome 3300043958 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_CSTR_084 DOE Joint Genome Institute (JGI) 3300043958 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 129029300 195603 135 1 200 2 SRX12655158 Unrestricted 137.44 Metagenome 3300027036 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A5-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300027036 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 84687939 259325 204 3 368 7 SRX1991124 Unrestricted 0.0 Metagenome 3300038719 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A24_35cm_12M University of Tennessee 3300038719 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 40044958 85208 47 0 88 0 SRX710619 0.0 Metagenome 3300013723 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00624 Weill Cornell Medical College 3300013723 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.8 -73.91 24887752 37073 16 2 21 3 SRX822591 0.0 Metagenome 3300018037 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10 DOE Joint Genome Institute (JGI) 3300018037 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 1216538912 2480101 669 100 1210 170 SRX3960600 Unrestricted 7.53 Metagenome 2010170001 *Microbiome Draft Hot spring microbial communities from Bison Spring, Yellowstone National Park, USA, analyzing thermal gradients 3_050719R DOE Joint Genome Institute (JGI) 2010170001 Metagenome Analysis lucy / pga No Yes eshock@asu.edu Everett Shock No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6 -110.9 28728092 43764 15 0 35 0 Unrestricted 0.0 Metagenome 3300007020 *Microbiome Permanent Draft Non-marine hypersaline water viral communities from Mallorca 2014 (Spain)E1 Non-marine hypersaline water viral communities from Mallorca, Spain, 2014 - E1 T-1 University of Alicante 3300007020 Metagenome Analysis IDBA 1.1.1 PRE correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline water 39.338015 3.051796 24740360 73000 17 0 3 0 0.0 Metagenome 3300039636 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Barrow Environmental Observatory, Tundra, AK, USA - BARR_002-O-20170808-COMP-DNA1 Battelle Memorial Institute 3300039636 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 71.28241 -156.61936 92624436 214252 115 7 258 16 0.0 Metagenome 3300039169 *Microbiome Permanent Draft Atacama calcite ignimbrite endoliths Ignimbrite rock endolithic microbial communities from the Atacama Desert, Chile - Lomas de Tilocalar, E1 Genomics Resource Center - University of Maryland 3300039169 Metagenome Analysis IDBA v. 1.0 released by JGI data releasing policy No Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified ignimbrite rocks -23.9569444 -68.1702778 164478430 204455 34 0 58 0 0.0 Metagenome 3300009642 *Microbiome Permanent Draft Anaerobic biogas reactor microbial communites from Washington, USA Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2_B C13 SIP DNA DOE Joint Genome Institute (JGI) 3300009642 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes dacb@uw.edu David Beck Yes 28895946 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic biogas reactor 47.6525 -122.3049 478157846 800699 384 0 637 0 SRX2339137 Unrestricted 0.0 Metagenome 3300043617 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 185-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043617 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.858 -107.0911 402795806 1159440 467 31 805 46 Unrestricted 7.1 Metagenome 3300032896 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4 DOE Joint Genome Institute (JGI) 3300032896 Metagenome Analysis spades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified soil 26.5059 -80.2517 3426752420 6191365 1058 180 1610 274 SRX5666035 Unrestricted 13.72 Metagenome 3300001746 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Olavius algarvensis symbiont microbial communities from Tuscany, Italy - Type G ELBA extract 2 DOE Joint Genome Institute (JGI) 3300001746 Metagenome Analysis Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 42.8072 10.1411 399871612 1174674 18 9 17 9 SRX2554373 Unrestricted 0.0 Metagenome 3300031732 *Microbiome Permanent Draft Halite endoliths microbial communities diversity study Halite endolithic microbial communities from Salar Grande, Atacama Desert, Chile - SG1-2017-02 Nextera XT re-sequencing Johns Hopkins School of Medicine 3300031732 Metagenome Analysis metaSPAdes v. 3.12 released by JGI data releasing policy Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Halite pinnacle -20.95319 -70.019951 349550497 453992 70 2 71 2 0.0 Metagenome 3300039187 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Taynaya Bay, Antarctica - #412 BFC corrected reads Australian Centre for Ecogenomics 3300039187 Metagenome Analysis Spades v. 3.13.0, BFC v. 181 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.457867 78.220083 439736431 936450 414 5 653 14 0.0 Metagenome 3300000512 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Petrochemical wastewater microbial community from Syncrude tailings pond, Wood Buffalo, Alberta, Canada McGill University 3300000512 Metagenome Analysis released per user request No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Lab enrichment Anaerobic media Defined media Unclassified Hydrocarbon resource environments 57.02 -111.55 0 0 0 0 0 0 0.0 Metagenome 3300047497 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Southern Region, Iceland - Sphagnum teres 7_TE_ICE DOE Joint Genome Institute (JGI) 3300047497 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.1115 -20.561 1345525783 1924570 458 70 660 118 SRX14786662 Unrestricted 10.94 Metagenome 3300050345 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 P1 10-14 DOE Joint Genome Institute (JGI) 3300050345 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.047 792201181 1207862 164 24 275 30 Restricted 14.52 Metagenome 3300011954 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00539 Weill Cornell Medical College 3300011954 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.9 35612786 56597 25 0 37 0 SRX822506 0.0 Metagenome 3300003356 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A2a-11 DOE Joint Genome Institute (JGI) 3300003356 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 106567 360 21 0 34 0 SRX2576216 Unrestricted 0.0 Metagenome 3300001895 *Microbiome Permanent Draft Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils (2) Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils - Sample9 3300001895 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Terrestrial Unclassified Soil Grasslands Grassland soil 23.850674 69.734802 0 0 0 0 0 0 0.0 Metagenome 3300021379 *Microbiome Permanent Draft Coastal seawater microbial communities from Pivers Island, North Carolina, United States Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247 DOE Joint Genome Institute (JGI) 3300021379 Metagenome Analysis spades v. 3.11.1-check Yes Yes dana.hunt@duke.edu Dana Hunt No Environmental Aquatic Coastal Marine Unclassified seawater 34.7181 -76.6707 1195614521 2681692 697 194 1001 352 SRX4010397 Unrestricted 13.57 Metagenome 3300003648 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 day 99 University of Sao Paulo, Virginia Bioinformatics Institute 3300003648 Metagenome Analysis SoapDeNovo released per PI's request No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 269590417 692865 11 3 47 20 0.0 Metagenome 3300050270 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_25 DOE Joint Genome Institute (JGI) 3300050270 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.491 160.905 534545392 880233 92 47 114 64 SRX18235913 Restricted 26.44 Metagenome 3300040023 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Abby Road, Pacific Northwest, WA, USA - ABBY_062-M-20170606-COMP-DNA1 Battelle Memorial Institute 3300040023 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.76243 -122.33033 14755520 43041 57 6 122 7 0.0 Metagenome 3300012573 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100517 University of Pennsylvania 3300012573 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 19905749 29713 17 1 26 0 SRX756237 0.0 Metagenome 3300040364 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_007-M-20170627-COMP-DNA1 Battelle Memorial Institute 3300040364 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 6355005 18732 40 3 68 4 0.0 Metagenome 3300029812 *Microbiome Permanent Draft Washington Margin Metagenomes Marine sediment microbial communities from Washington margin, Washington, USA - Site 2 Core 4 Marine Biological Laboratory 3300029812 Metagenome Analysis Megahit v. 1.1.1-2 released by JGI data releasing policy No Yes michaelgraw@gmail.com Michael Graw No Environmental Aquatic Cold seeps Marine Sediment marine sediment 47.9299 -125.6406 1.5 509105088 924534 319 4 504 5 0.0 Metagenome 3300070556 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_001-O-20190807-COMP-DNA1 Battelle Memorial Institute 3300070556 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 68.585776 -149.54318 4.94-5.21 28047096 85679 55 4 106 4 0.0 Metagenome 3300011650 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway n/a -P00657 Weill Cornell Medical College 3300011650 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Unclassified city subway 40.85 -73.93 29886685 45704 21 0 26 0 SRX822624 0.0 Metagenome 3300026912 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgHPB (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026912 Metagenome Analysis spades v. 3.11.1 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 48571008 163581 148 6 263 5 SRX2521132 Unrestricted 0.0 Metagenome 7000000211 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159247771 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000211 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 16237415 36284 0 0 0 0 0.0 Metagenome 3300038365 *Microbiome Permanent Draft Liquor fermentation pit mud microbial communities from Chongqing University, China Liquor fermentation pit mud microbial communities from Luzhou, China - Meta-6-2-50-M Chongqing University 3300038365 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Bioreactor Unclassified Unclassified Unclassified Fermentation pit mud 28.88 105.45 164679744 235252 136 0 223 0 SRX691279 0.0 Metagenome 3300029128 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012243-142 Beijing Genomics Institute (BGI) 3300029128 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 163379155 195853 124 0 191 0 0.0 Metagenome 3300056888 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F1L_50_52 DOE Joint Genome Institute (JGI) 3300056888 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.95358208 -81.6734609 1891931810 2806365 816 0 1281 0 Unrestricted 14.17 Metagenome 3300038559 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 5-9 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300038559 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 602789273 1056080 182 16 291 24 SRX8138101, SRX8138100 Unrestricted 0.0 Metagenome 3300001659 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized - NN339 DOE Joint Genome Institute (JGI) 3300001659 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 1957 10 0 0 0 0 SRX1986736 Unrestricted 0.0 Metagenome 2010388001 *Microbiome Permanent Draft Poplar biomass bioreactor microbial communities from Brookhaven National Lab, NY Poplar biomass bioreactor microbial communities from Brookhaven National Lab, NY - anaerobic community DOE Joint Genome Institute (JGI) 2010388001 Metagenome Analysis Newbler Released on PI's request No Yes vdlelied@rti.org Daniel van der Lelie Yes 22629327 Engineered Solid waste Composting Wood Bioreactor Poplar biomass bioreactor 40.869444 -72.886667 11096014 20891 0 0 0 0 0.0 Metagenome 3300035357 *Microbiome Permanent Draft Mouse fecal microbial communities from various locations Fecal microbial communities from mouse strain C57/BL6 in China - MH-0-3 Beijing Genomics Institute (BGI) 3300035357 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 22.5537717 114.0871167 91644211 124582 143 0 252 2 0.0 Metagenome 3300010406 *Microbiome Permanent Draft Microbial communities from soil contaminated with neutral mine drainage from mine area in Canaa dos Carajas, Brazil Microbial communities from soil contaminated with neutral mine drainage from mine area in Canaa dos Carajas, Brazil - Middle of the channel P4 Illumina 3300010406 Metagenome Analysis IDBA UD released per JGI data release policy No Yes leticiabp11@gmail.com Leticia Pereira No Environmental Terrestrial Unclassified Soil Contaminated soil -6.42916667 -50.06611111 273974 742 0 0 1 1 0.0 Metagenome 3300038318 *Microbiome Permanent Draft Liquor fermentation pit mud microbial communities from Chongqing University, China Liquor fermentation pit mud microbial communities from Mianyang, China - Meta-8-1-20-B Chongqing University 3300038318 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Bioreactor Unclassified Unclassified Unclassified Fermentation pit mud 31.46 104.68 248168711 340289 172 0 299 0 SRX691284 0.0 Metagenome 3300069229 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Healy, Denali National Park, Alaska, USA - HEAL_048-M-20210622-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069229 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Terrestrial soil 63.875088 -149.210438 1499261653 3631812 714 43 1258 80 0.0 Metagenome 3300040580 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_004-M-20131112-COMP-DNA1 Argonne National Laboratory 3300040580 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 1992951 6018 25 3 40 7 0.0 Metagenome 3300039091 *Microbiome Permanent Draft Industrial fuel microbial communities from aircraft samples near Hamburg, Germany Industrial fuel microbial communities from aircraft samples near Hamburg, Germany - 190829_022_002 HPI Heinrich-Pette-Institut 3300039091 Metagenome Analysis MetaSpades v. 3.1 released by JGI data releasing policy No Yes wolfgang.streit@uni-hamburg.de; ines.krohn@uni-hamburg.de Wolfgang Streit; Ines KROHN No Engineered Industrial production Unclassified Engineered product Unclassified Industrial fuel 53.338 9.5152 74704019 117280 26 5 38 9 0.0 Metagenome 3300042702 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from Lucky Strike-Montsegur hydrothermal vent, Atlantic Ocean - BazoSym_LS-MS_3_1048H Re-assembly Max Planck Institute for Marine Microbiology 3300042702 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 37.28806 -32.27557 8298103 12118 4 2 7 1 ERX3367191 0.0 Metagenome 3300001985 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - Control2 3300001985 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 15467752 83622 192 3 320 7 0.0 Metagenome 3300000752 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion DOE Joint Genome Institute (JGI) 3300000752 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300015606 *Microbiome Permanent Draft Wastewater microbial communities from the domestic sewers Wastewater microbial communities from domestic sewers in Singapore - Site D Oct Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300015606 Metagenome Analysis CLC workbench released by JGI data releasing policy No Yes erinscm@nus.edu.sg Charmaine Ng No Engineered Wastewater Unclassified Sewage Unclassified Wastewater 1.28362 103.859825 145640000 220950 30 2 46 1 0.0 Metagenome 3300021212 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge Stylissa sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - st43is 200bp-microeukaryotes University of New South Wales 3300021212 Metagenome Analysis IDBA-UD released by JGI data releasing policy Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Sylissa sp. (marine sponge) -9.8241 150.825833 803659 1429 0 0 0 0 0.0 Metagenome 3300027227 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1548A-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027227 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2319 -123.8812 189761769 383873 139 6 202 7 SRX2753717 Unrestricted 0.0 Metagenome 3300020074 *Microbiome Permanent Draft Freshwater microbial communities from Lake Tanganyika, Tanzania Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m DOE Joint Genome Institute (JGI) 3300020074 Metagenome Analysis spades v. 3.10.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater lake -6.1786 29.658 2317783759 4385230 1302 74 1937 116 SRX3940860 Unrestricted 22.1 Metagenome 3300013662 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01127 Weill Cornell Medical College 3300013662 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.91 13459896 20171 7 0 15 0 SRX823082 0.0 Metagenome 7000000144 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 246515023 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000144 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 116721961 223869 0 0 0 0 0.0 Metagenome 3300070716 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lajas Experimental Station, Puerto Rico, USA - LAJA_042-M-20171127-COMP-DNA1 3300070716 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 1694 5 0 0 0 0 0.0 Metagenome 3300027691 *Microbiome Permanent Draft Agricultural soil microbial communities from Utah and Georgia to study Nitrogen management Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027691 Metagenome Analysis spades v. 3.11.1 Yes Yes jeanette.norton@usu.edu Jeanette Norton No Environmental Terrestrial Agricultural land Soil Unclassified Agricultural soil 41.7655 -111.8143 504169340 1114986 598 30 1063 54 SRX2922493 Unrestricted 0.0 Metagenome 3300018906 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 3 min after wetting v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018906 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 371167358 728533 301 8 478 15 0.0 Metagenome 3300027907 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300027907 Metagenome Analysis spades v. 3.11.1 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Host-associated Plants Rhizosphere Roots Soil Populus rhizosphere 35.8444 -83.9599 2587823506 5728460 1081 69 1953 129 SRX2748709, SRX2748708, SRX2748710 Unrestricted 0.0 Metagenome 3300041069 *Microbiome Permanent Draft Contaminated soil microbial communities from Humid Pampas, Chascomus Partido, Argentina Control soil microbial communities from Humid Pampas, Chascomus Partido, Argentina - L2_145 Illumina 3300041069 Metagenome Analysis Megahit v. 1.2.10 released by JGI data releasing policy No Yes valeria.imperato@uhasselt.be Valeria Imperato No Environmental Terrestrial Unclassified Soil Agricultural land Control soil -35.5787 -58.0138 39931343 71281 20 0 31 0 0.0 Metagenome 3300028239 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen5, Rep 2, Chloramphenicol (External Submission) DOE Joint Genome Institute (JGI) 3300028239 Metagenome Analysis No Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 206705614 351877 53 36 103 63 Unrestricted 0.0 Metagenome 3300026365 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T50 DOE Joint Genome Institute (JGI) 3300026365 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 93611526 217743 173 20 331 31 SRX4550062 Unrestricted 62.1 Metagenome 3300038912 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Taynaya Bay, Antarctica - #411 BFC corrected reads Australian Centre for Ecogenomics 3300038912 Metagenome Analysis Spades v. 3.13.0, BFC v. 181 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.457867 78.220083 256201821 479582 251 34 337 55 0.0 Metagenome 3300020577 *Microbiome Finished Seoul Wastewater Treatment Plant Virome, South Korea Freshwater viral community from Jungnang river, downstream of Jungnang wastewater treatment plant effluent, Seoul, South Korea - JLR-down Macrogen 3300020577 Metagenome Analysis SPAdes 3.10.1 released by JGI data releasing policy No Yes chojc@inha.ac.kr Jang-Cheon Cho No Environmental Aquatic River Freshwater Unclassified freshwater 37.552545 127.052926 735061896 1888928 6 3 28 6 0.0 Metagenome 3300045188 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_1_C DOE Joint Genome Institute (JGI) 3300045188 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 166710599 195018 95 1 128 2 Unrestricted 125.35 Metagenome 3300008337 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159490532 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008337 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 105827364 166766 89 0 108 0 0.0 Metagenome 3300026559 *Microbiome Permanent Draft Army ant gut microbial communities Army ant gut microbial communities from Eciton burchelli, Santa Rosa, Costa Rica - colony SREbp2 University of California, Berkeley 3300026559 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy Yes Yes jar337@drexel.edu Jacob Russell No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Army ant gut 10.85 -85.62 216718278 236614 10 87 11 887 0.0 Metagenome 3300024062 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1 DOE Joint Genome Institute (JGI) 3300024062 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Strait Marine Unclassified seawater 49.2166667 -123.5333333 1082882362 2682863 834 99 1550 150 SRX4097021 Unrestricted 8.33 Metagenome 3300003764 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_1/23/2012_ DNA DOE Joint Genome Institute (JGI) 3300003764 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 141939480 224512 166 16 247 16 SRX2714414 Unrestricted 0.0 Metagenome 3300034200 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190 DOE Joint Genome Institute (JGI) 3300034200 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1584988941 3232430 803 216 1203 380 SRX7622422 Unrestricted 12.0 Metagenome 3300013588 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100190 University of Pennsylvania 3300013588 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4576223 8091 5 3 6 6 SRX756343 0.0 Metagenome 3300031939 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2 DOE Joint Genome Institute (JGI) 3300031939 Metagenome Analysis spades v. 3.12.0 Yes Yes icelab@berkeley.edu Steven Lindow No Environmental Terrestrial Agricultural land Soil Unclassified soil 37.8864 -122.2981 3507536332 8337332 1991 159 3272 274 SRX6411938 Unrestricted 8.09 Metagenome 7000000336 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764083206 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000336 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 46994288 97906 0 0 0 0 0.0 Metagenome 3300026318 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0927_12_20cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026318 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 615022139 1091449 327 9 484 11 SRX2521026 Unrestricted 0.0 Metagenome 3300002706 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A4-11 DOE Joint Genome Institute (JGI) 3300002706 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 95005 315 16 0 25 0 SRX1991143 Unrestricted 0.0 Metagenome 3300043130 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5NT15 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043130 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 41165502 115713 159 8 256 15 SRX8379436 Unrestricted 16.64 Metagenome 3300009877 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA10 University of New South Wales 3300009877 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes z5119396@unsw.edu.au; h.luter@aims.gov.au Hung Nguyen; Holly Bennett No Host-associated Porifera Unclassified Unclassified Unclassified Marine -18.833 147.683 8.1 35164184 53153 30 3 26 3 0.0 Metagenome 3300044219 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T24 S DOE Joint Genome Institute (JGI) 3300044219 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7203 -64.1922 318014190 768253 22 5 44 11 Unrestricted 47.52 Metagenome 3300005539 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 DOE Joint Genome Institute (JGI) 3300005539 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 5560718742 14790465 4118 309 7043 587 SRX2782926 Unrestricted 0.0 Metagenome 3300024942 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 50_LOW8 (SPAdes) DOE Joint Genome Institute (JGI) 3300024942 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 63797901 107038 34 0 40 0 SRX2720582 Unrestricted 0.0 Metagenome 3300044690 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - COA3D DOE Joint Genome Institute (JGI) 3300044690 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 560324057 1045145 334 20 701 27 Unrestricted 19.73 Metagenome 3300012452 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100206 University of Pennsylvania 3300012452 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 11882327 23052 8 0 10 1 SRX756693 0.0 Metagenome 3300030412 *Microbiome Permanent Draft Coastal intertidal sediment microbial communities near Norwich, United Kingdom Coastal intertidal sediment microbial communities near Norwich, United Kingdom - DMS7 University of Warwick 3300030412 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Intertidal zone Marine Sediment Coastal intertidal sediment 52.965278 0.925833 25757972 43953 6 1 19 1 0.0 Metagenome 3300049759 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C13_A_4_drought DOE Joint Genome Institute (JGI) 3300049759 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 138996656 288452 282 31 565 40 Unrestricted 11.7 Metagenome 3300006856 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from Cariaco Basin, Caribbean Sea - 25B_WHOI_OMZ_CsCl DOE Joint Genome Institute (JGI) 3300006856 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 10.847 -65.114 104349797 188759 144 0 225 0 SRX2929477 Unrestricted 0.0 Metagenome 3300021070 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L442-13m DOE Joint Genome Institute (JGI) 3300021070 Metagenome Analysis spades v. 3.10.1 Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.775 -93.818 657624160 1414239 542 7 1042 16 SRX3984570 Unrestricted 15.19 Metagenome 3300014076 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Indonesia to Iowa, USA - IO3 Iowa State University 3300014076 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 1369688 2647 0 4 0 0 SRX1150290 0.0 Metagenome 3300057175 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2020-0051 DOE Joint Genome Institute (JGI) 3300057175 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.7269 -83.42329 564462570 1225118 502 199 770 321 Unrestricted 15.22 Metagenome 3300002157 *Microbiome Permanent Draft Saline desert soil microbial communities from Kutch, Gujarat, India Saline desert soil microbial communities from Kutch, Gujarat, India - S6 3300002157 Metagenome Analysis Released per request from Aanal Pandit - March 31 2014 No Yes ggi_gsbtm@yahoo.com Snehal Bagatharia No Environmental Terrestrial Unclassified Soil Desert Saline desert soil 23.940972 70.188444 300833452 2224072 1792 23 3756 58 0.0 Metagenome 3300040107 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 063B_R1 University of Maryland 3300040107 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.52723 18.90282 12034660 21507 36 2 53 4 0.0 Metagenome 3300025836 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Incubations 004-21A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025836 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.270939 -156.810374 560451603 1067314 353 0 580 1 SRX1990920 Unrestricted 0.0 Metagenome 3300031705 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #36 DOE Joint Genome Institute (JGI) 3300031705 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5735 77.9231 540712436 1100402 338 146 445 231 SRX5650067 Unrestricted 24.78 Metagenome 3300041584 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Unnamed Squid Lake #23 DOE Joint Genome Institute (JGI) 3300041584 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5195 78.3553 185383940 344183 137 26 204 39 SRX10085866 Unrestricted 29.22 Metagenome 3300005820 *Microbiome Permanent Draft Marine sediment microbial communities from Aarhus Bay station M5, Denmark Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 75 cmbsf, PM2 Aarhus University 3300005820 Metagenome Analysis IDBA released per JGI data release policy No Yes starnas88@gmail.com Piotr Starnawski No Environmental Aquatic Coastal Marine Sediment Marine sediment 56.10555 10.463333 144103570 216203 67 4 114 4 0.0 Metagenome 3300070780 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_007-O-20190109-COMP-DNA1 3300070780 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 12455279 38464 64 2 96 3 0.0 Metagenome 3300042735 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - Dsc3_c18.5 Re-assembly Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042735 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1247 -89.1411 1015960329 914452 2 10 5 13 SRX5234783 0.0 Metagenome 3300044994 *Microbiome Permanent Draft Microbial mat bacterial communities from hot springs in Waikite Valley, Taupo Volcanic Zone, New Zealand Microbial mat bacterial communities from hot spring in Waikite Valley, New Zealand - LMW_ETR_NZ_2018_Waikite_1_2 DOE Joint Genome Institute (JGI) 3300044994 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes LMWARD@post.harvard.edu Lewis Ward No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats microbial mat -38.3276 176.3016 515184305 644871 223 12 269 19 Unrestricted 68.02 Metagenome 3300007728 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 686765762 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007728 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 122909038 189860 134 0 149 0 0.0 Metagenome 3300008459 *Microbiome Permanent Draft Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - July 8, 2014 all contigs University of Michigan 3300008459 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes duhaimem@umich.edu Melissa Duhaime No Environmental Aquatic Lake Freshwater Unclassified freshwater lake 41.7032 -83.2575 8.33 409433507 801160 0 0 0 0 0.0 Metagenome 3300028197 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m DOE Joint Genome Institute (JGI) 3300028197 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified marine 50.0 -145.0 644003312 1235238 239 66 300 92 SRX5244620 Unrestricted 13.5 Metagenome 3300054095 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_10_100 re-annotation DOE Joint Genome Institute (JGI) 3300054095 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 262047230 509106 162 5 275 11 SRX3003285 0.0 Metagenome 3300026719 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A3-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300026719 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 17891687 60976 114 1 200 2 SRX1991133 Unrestricted 0.0 Metagenome 3300014282 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 204_L4_2014-5-28 San Diego State University 3300014282 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 9901420 23151 13 3 23 4 0.0 Metagenome 3300060450 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210612_16_17 DOE Joint Genome Institute (JGI) 3300060450 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 704548967 1016848 271 223 380 316 Unrestricted 34.38 Metagenome 3300009956 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 15 Autonomous University of Barcelona 3300009956 Metagenome Analysis SPAdes-3.8.1-Linux released per JGI data release policy Yes Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 5905879 10520 3 0 3 0 0.0 Metagenome 3300040649 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_043-O-20170621-COMP-DNA1 Battelle Memorial Institute 3300040649 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 2116893 6466 24 7 45 5 0.0 Metagenome 3300048008 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_190410.NP1 DOE Joint Genome Institute (JGI) 3300048008 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 714269792 1504696 426 42 601 85 Unrestricted 17.51 Metagenome 3300043352 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 174-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043352 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9363 -107.0119 320394758 888889 429 23 816 40 Unrestricted 7.09 Metagenome 3300040516 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_043-M-20160808-COMP-DNA1 Battelle Memorial Institute 3300040516 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 2938522 8682 12 0 33 1 0.0 Metagenome 3300000685 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 13 DOE Joint Genome Institute (JGI) 3300000685 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 6190283 19455 44 0 68 0 SRX4338614 Unrestricted 0.0 Metagenome 3300025101 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025101 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.198 -77.499 218753364 524406 21 0 28 0 SRX2926781 Unrestricted 0.0 Metagenome 3300049193 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - G25_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049193 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 101643533 237026 207 9 387 11 Unrestricted 0.0 Metagenome 3300037483 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVT2_Sep_135_v DOE Joint Genome Institute (JGI) 3300037483 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2618414500 3903240 1071 13 1651 15 SRX9164477 Unrestricted 14.5 Metagenome 3300041742 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_315 MetaG AgResearch, New Zealand, Mosgeil 3300041742 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1232611226 2333489 239 24 801 41 0.0 Metagenome 3300049519 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C22_B_7_drought DOE Joint Genome Institute (JGI) 3300049519 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 140922250 345258 372 23 712 44 Unrestricted 10.59 Metagenome 3300065650 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 823 in Enchant, Alberta, Canada - S00JY_0507 Microbiome Insights 3300065650 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 50.1313992 -112.190483 9898494 15376 22 0 36 0 0.0 Metagenome 3300045449 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-671 Genome Quebec 3300045449 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.214698 -124.055142 927202519 2036157 513 160 860 320 0.0 Metagenome 3300006977 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 737052003 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006977 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 3021100 4923 2 0 4 0 0.0 Metagenome 3300019744 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLT_4-5_MG DOE Joint Genome Institute (JGI) 3300019744 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 142284679 346253 235 19 456 31 SRX3983359 Unrestricted 3.73 Metagenome 3300005485 *Microbiome Finished Nasutitermes gut microbial communities from Costa Rica Termite gut microbial communities from Costa Rica - P3 luminal contents DOE Joint Genome Institute (JGI) 3300005485 Metagenome Analysis Phrap released based on JGI ITS Yes Yes phugenholtz@lbl.gov Phil Hugenholtz Yes 18033299 Host-associated Arthropoda: Insects Hindgut Digestive system Paunch/P3 segment Nasutitermes gut 10.11 -83.51 53507758 85468 27 0 70 0 Unrestricted 0.0 Metagenome 3300025313 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025313 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.534762 -107.782602 2102740675 4350400 1553 8 2635 23 SRX1991820 Unrestricted 0.0 Metagenome 3300049646 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Mesophilic digester sludge microbial communities from biogas plant in Weichs, Bavaria, Germany - PB8_MG_290118 DOE Joint Genome Institute (JGI) 3300049646 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 48.39537892 11.44760761 528948640 844625 690 3 982 6 Unrestricted 19.75 Metagenome 3300014151 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin23_60_metaG DOE Joint Genome Institute (JGI) 3300014151 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 724871157 1250310 321 2 611 5 SRX3293884 Unrestricted 20.32 Metagenome 3300045571 *Microbiome Draft Lake microbial communities from Canada Lake sediment microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-646 Genome Quebec 3300045571 Metagenome Analysis MEGAHIT v1.0.6 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Lake Sediment 48.714643 -123.613474 108169912 153371 73 16 118 19 0.0 Metagenome 3300042909 *Microbiome Permanent Draft Whole genome sequencing of bacteria isolated from intertidal zone macroalgae Mixed culture containing Pseudoalteromonas sp. from the University of Maine, Orono, USA - 44 Marine Biological Laboratory 3300042909 Metagenome Analysis SPAdes v. 3.14.0 released by JGI data releasing policy No Yes vfrazier@mbl.edu Victoria Frazier No Host-associated Algae Unclassified Brown Algae Unclassified defined medium 44.333806 -68.058083 8.2 5668046 6969 10 0 15 0 0.0 Metagenome 3300071108 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_054-M-20180618-COMP-DNA1 3300071108 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 13451009 42021 57 7 97 12 0.0 Metagenome 3300049358 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - 3-1 DOE Joint Genome Institute (JGI) 3300049358 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 384560803 1098192 467 7 868 18 Unrestricted 6.75 Metagenome 3300050012 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 P1 1-5 DOE Joint Genome Institute (JGI) 3300050012 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.047 786548291 1218988 195 14 350 24 Restricted 11.75 Metagenome 3300042229 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D206_1 DOE Joint Genome Institute (JGI) 3300042229 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 166178592 233861 125 6 168 10 Unrestricted 73.1 Metagenome 3300017643 *Microbiome Permanent Draft Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA Microbial communities from bioreactor (seeded with sewage sludge) at Lawrence Berkeley National Lab, California, USA - Biofuel Metagenome 8 - Hybrid Assembly (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017643 Metagenome Analysis Yes Yes hrbeller@lbl.gov Harry Beller Yes 29556105 Engineered Bioreactor Unclassified Anaerobic Unclassified Bioreactor 37.82 -122.29 139285017 128446 76 0 76 0 SRX2769834, SRX2769835, SRX2769836, SRX2769832, SRX2769833 Unrestricted 0.0 Metagenome 3300013171 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100286 University of Pennsylvania 3300013171 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 37843948 73238 21 0 29 0 SRX756615 0.0 Metagenome 3300003913 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 m-RNA DAY 64 University of Sao Paulo, Virginia Bioinformatics Institute 3300003913 Metagenome Analysis SoapDeNovo released per PI's request No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 58169801 126487 16 55 49 165 0.0 Metagenome 3300028062 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_28AUG2017_LD1 DOE Joint Genome Institute (JGI) 3300028062 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 101733175 204247 51 112 58 189 SRX5345909 Unrestricted 17.77 Metagenome 3300025642 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKL (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025642 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 444311389 782809 360 0 559 2 SRX2747199 Unrestricted 0.0 Metagenome 3300036348 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Deep Lake round-1 #48 DOE Joint Genome Institute (JGI) 3300036348 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5549 78.1864 115110970 202062 82 2 133 6 SRX8865779 Unrestricted 101.24 Metagenome 3300040625 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_060-O-20160726-COMP-DNA1 Battelle Memorial Institute 3300040625 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 1269248 3684 21 4 23 6 0.0 Metagenome 3300038495 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - ATL3 Michigan State University 3300038495 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 30.306667 -140.93 9673828 23096 14 1 22 2 0.0 Metagenome 3300028404 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #50 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028404 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 39203907 67018 26 1 35 4 SRX2526858 Unrestricted 0.0 Metagenome 3300027598 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Colum_RepB_8h DOE Joint Genome Institute (JGI) 3300027598 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 170952119 322556 120 7 142 11 SRX5245244 Unrestricted 19.69 Metagenome 2199352008 *Microbiome Draft Rice-straw enriched compost microbial community from Berkeley Thermophilic microbial communities from the Joint Bioenergy Institute, California, USA of rice/straw/compost enrichment - eDNA_2 v1 DOE Joint Genome Institute (JGI) 2199352008 Metagenome Analysis released based on JGI ITS No Yes jikhudyakov@lbl.gov, apreddy@ucdavis.edu Jane Khudyakov, Amitha Reddy Yes 24205054 Engineered Solid waste Composting Grass Bioreactor Rice-straw enriched compost 38.5402727 -121.7500776 256665756 436647 189 0 252 0 Unrestricted 0.0 Metagenome 3300002267 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP08-MB 3300002267 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300048884 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from Gulf of California, Mexico - CTD-FK190211-01-2006m-0.1 DOE Joint Genome Institute (JGI) 3300048884 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 27.00134 -111.41153 395939517 637963 172 1 236 0 Unrestricted 84.65 Metagenome 2021593000 *Microbiome Permanent Draft Tigriopus californicus microbial communities from Ocean Beach, California, USA Sample 264 2021593000 Metagenome Analysis released by No Yes rburton@ucsd.edu Ron Burton No Host-associated Arthropoda: Crustaceans Unclassified Whole body Unclassified Tigriopus californicus 32.7497 -117.2574 58118889 86319 45 0 70 0 0.0 Metagenome 3300020224 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Extremophilic microbial mat communities from Yellowstone National Park, Wyoming, USA - OCT_B_ViralDNA DOE Joint Genome Institute (JGI) 3300020224 Metagenome Analysis spades v. 3.10.1 Yes Yes jim.fredrickson@pnnl.gov; binskeep@montana.edu Jim Fredrickson; William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 44.534 -110.7978 43262503 105569 60 5 89 8 SRX3940879 Unrestricted 463.27 Metagenome 3300043431 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Orco River, San Benigno Canavese, Piedmont, Italy - orco_2019_sw_WHONDRS-S19S_0018 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043431 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 45.2476 7.8043 115370947 245168 173 19 263 36 Unrestricted 26.29 Metagenome 3300039677 *Microbiome Permanent Draft Glacier soil microbial communities from Mackay Glacier, Antarctica Glacier soil microbial communities from Mackay Glacier, Antarctica - MS1-1 University of Pretoria 3300039677 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Terrestrial Glacier Soil Unclassified Glacier soil -77.019 161.779 54405986 104083 38 0 51 0 0.0 Metagenome 3300006123 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH28Sep08 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006123 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 306719762 808295 165 48 257 102 SRX2565399 Unrestricted 0.0 Metagenome 3300002814 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G07K5-12 DOE Joint Genome Institute (JGI) 3300002814 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 399653 1266 26 1 25 2 SRX1991312 Unrestricted 0.0 Metagenome 3300042245 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D291_3 DOE Joint Genome Institute (JGI) 3300042245 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 227605199 340726 166 7 259 13 Unrestricted 76.11 Metagenome 3300002289 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP08-I3 3300002289 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300001311 *Microbiome Permanent Draft Bioengineered switchgrass rhizosphere microbial community from Knoxville, Tennessee, USA Bioengineered switchgrass rhizosphere microbial community from Knoxville, Tennessee, USA - 26-2 3300001311 Metagenome Analysis released by JGI data releasing policy No Yes jliu36@utk.edu Jiang Liu No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 35.98 -83.92 246025 890 2 1 16 4 0.0 Metagenome 3300048690 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_50 DOE Joint Genome Institute (JGI) 3300048690 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 341826797 740188 1097 20 2021 31 Restricted 0.0 Metagenome 3300005812 *Microbiome Permanent Draft Microbial communities of deep water horizon oil spill from Gulf of Mexico n-hexadecane enriched communities from Deep Water Horizon Oil spill University of Texas, Austin 3300005812 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes acidophile@gmail.com Brett Baker No Environmental Aquatic Coastal Marine Unclassified Oil-contaminated sea surface 28.06958 -88.37225 10246332 10854 2 0 1 0 0.0 Metagenome 3300042370 *Microbiome Permanent Draft Green algae associated microbial communities from Chlorella culture in University of Arizona, United States Green algae associated microbial communities from Chlorella culture in LANL, New Mexico, United States - Vampirovibrio chlorellavorus (version 2) DOE Joint Genome Institute (JGI) 3300042370 Metagenome Analysis metaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes jbrown@ag.arizona.edu Judith Brown No Host-associated Algae Unclassified Green algae Unclassified green algae 35.8436 -106.2877 51790999 50412 22 0 24 0 Unrestricted 0.0 Metagenome 3300030420 *Microbiome Permanent Draft Freshwater lake viral communities from Lake Michigan, near Chicago, USA Freshwater lake viral communities from Lake Michigan, near Chicago, USA- 57Street140624.1V Genewiz Inc., Loyola University 3300030420 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.7904 -87.5781 26621272 50785 26 0 38 0 0.0 Metagenome 3300020442 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162) CEA Genoscope 3300020442 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 7.416 79.3102 1183742951 2929606 503 37 928 70 0.0 Metagenome 3300012280 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00332 Weill Cornell Medical College 3300012280 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.74 -73.99 54428207 86606 23 0 36 0 SRX822305 0.0 Metagenome 3300045425 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Missouri River, Nebraska, USA - NASQAN2011_051 DOE Joint Genome Institute (JGI) 3300045425 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 41.2588 -95.9225 363811378 975545 645 75 1097 115 Unrestricted 0.0 Metagenome 3300018076 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex DOE Joint Genome Institute (JGI) 3300018076 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 .6 926708507 2027923 667 6 1249 18 SRX3939072 Unrestricted 5.62 Metagenome 3300027077 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C27A4_35 (SPAdes) DOE Joint Genome Institute (JGI) 3300027077 Metagenome Analysis spades v. 3.11.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 138731789 345924 142 48 274 89 SRX1991082 Unrestricted 0.0 Metagenome 2222084005 *Microbiome Finished Microbial communities from bioreactor at West Virginia State University,USA and at Bielefeld, Germany Thermophilic bioreactor microbial communities at WVSU, USA West Virginia State University 2222084005 Metagenome Analysis Newbler released per JGI data release policy No Yes dsharma@wvstateu.edu Deepak Sharma No Engineered Solid waste Composting Grass Bioreactor Solid waste from Bioreactor 39.0042816 -77.1012173 7.89 403573940 1232887 1460 0 2666 0 0.0 Metagenome 3300047389 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from St. Lawrence River, NewYork, USA - NASQAN2014_141 DOE Joint Genome Institute (JGI) 3300047389 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 197687822 435929 107 14 187 24 Unrestricted 59.22 Metagenome 3300014261 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleC_D1 DOE Joint Genome Institute (JGI) 3300014261 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.107521 -121.649681 269317205 701529 448 15 822 35 SRX7188791 Unrestricted 0.0 Metagenome 3300004824 *Microbiome Permanent Draft Chicken cecum microbial communities from Brno, Czech Republic, of chickens treated with various antibiotics Chicken cecum microbial communities from Brno, Czech Republic, of chickens treated with various antibiotics - Erythromycin treated Masaryk University 3300004824 Metagenome Analysis IDBA released per JGI data release policy No Yes djurdjica.marosevic@gmail.com Durdica Marosevic No Host-associated Birds Large intestine Digestive system Ceca chicken cecum 49.19522 16.60796 16912732 40418 49 2 68 5 0.0 Metagenome 3300004459 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Marine microbial communities from Galveston Bay (MSEDA12C- fraction 11) Shell Corporation 3300004459 Metagenome Analysis SOAPdenovo released per JGI data release policy No Yes ebalsop@lbl.gov, nicolas.tsesmetzis@shell.com Eric Alsop, Nicolas Tsesmetzis No Environmental Aquatic Oceanic Marine Sediment sediment 29.5 -94.76 168394860 583399 235 10 608 8 0.0 Metagenome 3300013470 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Human oral microbial communities from various locations - University of British Columbia - SCG34 University of British Columbia 3300013470 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Unclassified Human oral 164751 466 1 1 6 0 SRX143143 0.0 Metagenome 3300027701 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027701 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 51.62 -128.09 505932501 1248880 316 91 678 136 SRX2575216 Unrestricted 0.0 Metagenome 3300070341 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_001-O-20190619-COMP-DNA1 3300070341 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 141367789 376420 157 23 276 38 0.0 Metagenome 3300060282 *Microbiome Permanent Draft Sediment microbial communities from the PNNL SFA Hanford 300 Area, Columbia River, WA, USA Sediment microbial communities from in situ POM Reactor at the PNNL SFA Hanford 300 Area, Columbia River, WA, USA - Shallow Unashed with POM DOE Joint Genome Institute (JGI) 3300060282 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes eroden@geology.wisc.edu Eric Roden No Environmental Aquatic River Freshwater Sediment Sediment 46.467778 -119.464444 1548361004 2386540 551 112 638 153 Unrestricted 22.9 Metagenome 3300007345 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 DOE Joint Genome Institute (JGI) 3300007345 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes chenf@umces.edu, chenf@umces.edu; bcampb7@clemson.edu Feng Chen, Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.130153 -75.249887 724055380 1596587 146 2 200 0 SRX2745131, SRX3785818, SRX3785817 Unrestricted 0.0 Metagenome 3300012331 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100499 University of Pennsylvania 3300012331 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 18411726 43275 16 0 30 0 SRX756499 0.0 Metagenome 3300020600 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Lodgepole_Yose_4 DOE Joint Genome Institute (JGI) 3300020600 Metagenome Analysis spades v. 3.10.1 Yes Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.6622 -119.6197 517057000 1080672 25 112 32 152 SRX4002588 Unrestricted 37.89 Metagenome 3300042692 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A50 University of California, Davis 3300042692 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 260204406 730417 331 1 562 4 0.0 Metagenome 3300011834 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00812 Weill Cornell Medical College 3300011834 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.62 -73.97 49040236 63828 22 0 34 0 SRX822778 0.0 Metagenome 3300007270 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 2, subject 159571453 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007270 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 38854555 65578 31 0 53 10 SRX024560, SRX024559 0.0 Metagenome 3300003541 *Microbiome Permanent Draft Microbial community impact on carbon sequestration in managed wetland Carbon farming Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk v4 (version 7) DOE Joint Genome Institute (JGI) 3300003541 Metagenome Analysis Metagenome Standard Draft released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Sediment Wetland 38.1072 -121.6485 1842474917 3667351 2832 43 4672 55 SRX2514378, SRX2514377, SRX2514379, SRX2514380 Unrestricted 0.0 Metagenome 3300045694 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_2_A DOE Joint Genome Institute (JGI) 3300045694 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 158125978 184427 93 2 109 2 Unrestricted 127.81 Metagenome 3300025400 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul09 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025400 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 143983737 298609 90 10 150 15 SRX2565522 Unrestricted 0.0 Metagenome 3300050020 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 P2 50-54 DOE Joint Genome Institute (JGI) 3300050020 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3535 19.0472 722456477 1044844 244 3 357 3 Restricted 20.31 Metagenome 3300059361 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.16C.12 SIP fraction DOE Joint Genome Institute (JGI) 3300059361 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 164956949 300355 108 45 189 72 Unrestricted 10.21 Metagenome 3300001524 *Microbiome Permanent Draft Black smokers hydrothermal plume microbial communities from Abe, Lau Basin, Pacific Ocean (2) Abe Hydrothermal Plume 3300001524 Metagenome Analysis MetaVelvet 1.2.02 released by JGI data releasing policy No Yes akarthik@umich.edu Karthik Anantharaman No Environmental Aquatic Hydrothermal vents Marine Black smokers Black smokers hydrothermal plume -21.0 176.0 250668864 447309 15 6 39 6 0.0 Metagenome 3300010383 *Microbiome Permanent Draft Soil microbial communities from Bangor area, North Wales, UK enriched with cashew seed oil Soil microbial communities from Bangor area, North Wales, UK enriched with cashew seed oil - week3, replicate 1 Fidelity Systems Inc 3300010383 Metagenome Analysis Phred/Phrap/Consed v. 23.0 released per JGI data release policy Yes Yes stepan.toshchakov@gmail.com Stepan Toshchakov No Engineered Lab enrichment Unclassified Unclassified Unclassified soil 53.24 -4.01 109433930 233843 51 5 63 4 0.0 Metagenome 3300040494 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - NIWO_041-O-20160828-COMP-DNA1 Battelle Memorial Institute 3300040494 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.05425 -105.58237 3620495 11124 32 8 60 14 0.0 Metagenome 3300045880 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from the Mud Volcano Area, Yellowstone National Park, WY, United States - MSUNE_GOPA_02 University of Wisconsin, Madison 3300045880 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.610018 -110.438827 134895218 199511 117 5 157 1 0.0 Metagenome 3300014534 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS63_6 University of Hohenheim 3300014534 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 69602366 116720 40 0 63 0 0.0 Metagenome 3300047367 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_150708.NP1 DOE Joint Genome Institute (JGI) 3300047367 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 499140547 1019290 365 60 495 105 Unrestricted 10.31 Metagenome 3300035204 *Microbiome Permanent Draft Seawater and sediment microbial communities from various locations Seawater microbial communities from, Arabian Sea, Indian Ocean - AMALJGI-DNA-9 DOE Joint Genome Institute (JGI) 3300035204 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bbw@princeton.edu Bess Ward No Environmental Aquatic Oceanic Marine Unclassified seawater 15.15 64.0 1065361597 2114533 622 125 1057 184 SRX8298329 Unrestricted 14.09 Metagenome 3300025295 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025295 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 353111844 484234 157 6 160 13 SRX2770660 Unrestricted 0.0 Metagenome 3300038624 *Microbiome Permanent Draft Freshwater microbial communities from various watersheds in Southwestern British Columbia, Canada Freshwater microbial communities from Southwestern British Columbia, Canada - MOCK_3 University of British Columbia 3300038624 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 49.0 -123.0 41672279 64747 27 0 21 0 0.0 Metagenome 3300022060 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 30 SPOT_SRF_2012-01-26 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022060 Metagenome Analysis spades v. 3.11.1-check Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 3369529 11534 9 1 7 7 SRX5471777, SRX5471776, SRX5471775 Unrestricted 0.0 Metagenome 3300064950 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 703 in Westerose, Alberta, Canada - S00JY_0255 Microbiome Insights 3300064950 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.55466504 -113.5615402 333385348 468121 136 5 190 6 0.0 Metagenome 3300032202 *Microbiome Permanent Draft Microbial communities from various environments in Magnetic Island Reef, Townsville, Australia Sediment microbial communities from Magnetic Island Reef, Townsville, Australia - 36356 AGRF 3300032202 Metagenome Analysis SpAdes v. 3.13.0 released by JGI data releasing policy Yes Yes b.glasl@aims.gov.au Bettina Glasl No Environmental Aquatic Coastal Marine Sediment Sediment -19.1531 146.8641 1953976193 5359216 1035 37 1553 70 0.0 Metagenome 3300012216 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100509 University of Pennsylvania 3300012216 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 7859932 13612 18 4 26 7 SRX756245 0.0 Metagenome 3300069245 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Desert Southwest, AZ, USA - SRER_052-M-20170815-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069245 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.91068 -110.83549 9323259 29722 44 0 92 1 0.0 Metagenome 3300045678 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-474 Genome Quebec 3300045678 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 54.381312 -128.559744 1138582661 2501919 565 186 908 333 0.0 Metagenome 3300014037 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S21-04-R University of California, Los Angeles 3300014037 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 243037019 365757 193 4 261 3 SRX870379 0.0 Metagenome 3300031695 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #233 DOE Joint Genome Institute (JGI) 3300031695 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5596 77.8957 720243267 1582635 259 12 439 30 SRX5650091 Unrestricted 0.0 Metagenome 3300021604 *Microbiome Permanent Draft Anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States Anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States - LAC_MetaG_1 DOE Joint Genome Institute (JGI) 3300021604 Metagenome Analysis spades v. 3.11.1-check Yes Yes alvarez@ce.berkeley.edu Lisa Alvarez-Cohen No Engineered Bioreactor Unclassified Anaerobic Unclassified anaerobic bioreactor biomass 37.8719 -122.2585 182905725 246615 80 0 115 0 SRX3998744 Unrestricted 80.36 Metagenome 3300053041 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Biomass microbial communities from acid-phase anaerobic digester in WWTP, Madison, WI, USA - 20210121_SampleB DOE Joint Genome Institute (JGI) 3300053041 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Sludge Anaerobic digester Unclassified Biomass 43.03331 -89.35633 243396642 251501 188 0 195 0 Unrestricted 18.03 Metagenome 3300029539 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P016V6 Beijing Genomics Institute (BGI) 3300029539 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 134783839 179597 115 0 183 0 0.0 Metagenome 3300025877 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_STIC10_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025877 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 41.84 -87.68 729143117 1498387 499 2 732 2 SRX2157901 Unrestricted 0.0 Metagenome 3300000839 *Microbiome Draft Passalidae beetle gut microbial communities from Costa Rica Passalidae beetle gut microbial communities from Costa Rica -Larvae (3ML+3BL) v2 (version 2) DOE Joint Genome Institute (JGI) 3300000839 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes davidhs@lsi.umich.edu, davidhs@umich.edu David Sherman No Host-associated Arthropoda: Insects Gut Larva Unclassified Passalidae beetle gut 10.207151 -84.007673 804003313 1802552 894 10 1742 23 Unrestricted 0.0 Metagenome 3300044700 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Columbia River, Richland, Washington, USA - columbiariver1_2019_sw_WHONDRS-S19S_0075 DOE Joint Genome Institute (JGI) 3300044700 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 46.6948 -119.4657 657377125 1069940 338 174 487 232 Unrestricted 20.66 Metagenome 3300069370 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone Northern Range (Frog Rock), Northern Rockies, WY, USA - YELL_016-M-20180710-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069370 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 44.95348 -110.53914 13168123 40696 58 4 119 12 0.0 Metagenome 3300002143 *Microbiome Permanent Draft Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds M3t6FKB2 (118f) 3300002143 Metagenome Analysis released by JGI data releasing policy No Yes daniel.herlemann@io-warnemuende.de, daniel.herlemann@emu.ee Daniel Herlemann, Daniel P. Herlemann No Environmental Aquatic Unclassified Unclassified Unclassified Marine 65.3915 23.49916667 268959316 1262360 276 68 588 61 0.0 Metagenome 3300007012 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 764649650 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007012 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 4113414 10453 10 1 16 5 SRX024981 0.0 Metagenome 3300001027 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized - NN335 DOE Joint Genome Institute (JGI) 3300001027 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 208649 616 13 0 28 3 SRX1986451 Unrestricted 0.0 Metagenome 3300046739 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 soil DOE Joint Genome Institute (JGI) 3300046739 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121316 -123.26986 5.05 930924510 1460025 226 17 380 29 Unrestricted 12.19 Metagenome 3300011011 *Microbiome Permanent Draft Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Top - Depth 1m Molecular Research LP (MR DNA) 3300011011 Metagenome Analysis metaSPAdes released by JGI data releasing policy No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.825 -82.975 8.18 310783766 1057980 96 9 192 24 0.0 Metagenome 7000000377 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764224817 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000377 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 60440791 116293 0 0 0 0 0.0 Metagenome 3300006007 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T3_23-Sept-14 DOE Joint Genome Institute (JGI) 3300006007 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 130273757 445436 309 65 670 111 SRX2838891 Unrestricted 0.0 Metagenome 3300009836 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N1_10_20 DOE Joint Genome Institute (JGI) 3300009836 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380143 -119.2723688 174871880 381990 186 2 368 7 SRX2523177 Unrestricted 0.0 Metagenome 3300013807 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Human oral microbial communities from various locations - University of British Columbia - SCG31 University of British Columbia 3300013807 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Unclassified Human oral 725496 1843 3 1 7 0 SRX143140 0.0 Metagenome 3300042079 *Microbiome Permanent Draft Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - C_c7 Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042079 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1237 -89.1404 644411781 667243 2 4 6 8 SRX5234782 0.0 Metagenome 3300039842 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_043-M-20170627-COMP-DNA1 Battelle Memorial Institute 3300039842 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 27311266 69869 58 1 113 1 0.0 Metagenome 3300029820 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P104V6 Beijing Genomics Institute (BGI) 3300029820 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 263509547 317927 171 0 240 0 0.0 Metagenome 3300026624 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_10_11 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026624 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 11186436 19072 14 0 21 0 SRX2924377 Unrestricted 0.0 Metagenome 3300051363 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - ATCR1C-14 DOE Joint Genome Institute (JGI) 3300051363 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 54797889 84360 51 9 69 9 Unrestricted 514.12 Metagenome 3300000520 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 28JUN2007 epilimnion v1 DOE Joint Genome Institute (JGI) 3300000520 Metagenome Analysis released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 2370415 2466 0 0 0 0 Unrestricted 0.0 Metagenome 3300041925 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS891_Anemone_DNA SE_2020 3300041925 Metagenome Analysis IDBA_UD v. 1.1.3 released by JGI data releasing policy No Yes cfortunato@gmail.com; randerson@carleton.edu; elks@mit.edu Caroline Fortunato; Rika Anderson; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933231 -130.013645 382383771 789430 438 37 805 63 0.0 Metagenome 3300022768 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S12 Version 2 University of New South Wales 3300022768 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 39140736 73407 12 7 16 14 0.0 Metagenome 3300032328 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 17-054 Genome Quebec 3300032328 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 47.694086 -67.642841 667678467 1312319 412 59 717 128 0.0 Metagenome 3300020536 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 02JUN2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020536 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 112318260 251265 96 15 156 27 SRX1989773 Unrestricted 0.0 Metagenome 3300014863 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT25_16_10D DOE Joint Genome Institute (JGI) 3300014863 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9227 -106.9509 114213689 286342 287 13 588 22 SRX3780231 Unrestricted 4.7 Metagenome 3300026200 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV49 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026200 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 400759020 759783 288 1 404 3 SRX2781557 Unrestricted 0.0 Metagenome 3300070804 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_012-M-20180718-COMP-DNA1 3300070804 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 6768314 22471 62 1 111 5 0.0 Metagenome 3300025956 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleA_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025956 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.224476 -122.019341 92783476 202868 164 0 279 0 SRX7143106 Unrestricted 0.0 Metagenome 3300009101 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG DOE Joint Genome Institute (JGI) 3300009101 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 2410618545 5001676 1625 234 2772 393 SRX3203338 Unrestricted 0.0 Metagenome 3300027574 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027574 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 295913225 760515 405 154 712 280 SRX1985374, SRX2021674 Unrestricted 0.0 Metagenome 3300053133 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere DOE Joint Genome Institute (JGI) 3300053133 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.587826 -123.193839 289013151 699362 307 65 527 104 Unrestricted 11.99 Metagenome 3300028348 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #293 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028348 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 64669905 122715 74 12 109 26 SRX3241969 Unrestricted 0.0 Metagenome 3300017657 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015 DOE Joint Genome Institute (JGI) 3300017657 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 610167502 1319073 435 19 740 29 SRX3047977 Unrestricted 5.54 Metagenome 3300006936 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-G DOE Joint Genome Institute (JGI) 3300006936 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.299 -156.61 13859654 58559 45 4 82 5 SRX2900872 Unrestricted 0.0 Metagenome 3300017965 *Microbiome Permanent Draft Populus soil microbial communities from riparian zone of different river systems in the western United States Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T DOE Joint Genome Institute (JGI) 3300017965 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jen.schweitzer@utk.edu Jennifer Schweitzer No Environmental Terrestrial Riparian zone Soil Unclassified soil 37.9013 -109.5337 1921554232 4704340 739 71 1450 149 SRX3901427 Unrestricted 5.03 Metagenome 3300036942 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B6.6_Sample6.Rodeo6.Well1132 DOE Joint Genome Institute (JGI) 3300036942 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 493946920 901071 502 1 769 0 SRX8356258 Unrestricted 32.51 Metagenome 3300026920 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN397 (SPAdes) DOE Joint Genome Institute (JGI) 3300026920 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Soil 44.20517707 -122.1284473 67300048 171448 104 5 188 9 SRX3311794 Unrestricted 0.0 Metagenome 3300045816 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_3_C DOE Joint Genome Institute (JGI) 3300045816 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 158637628 196980 95 1 123 5 Unrestricted 92.46 Metagenome 3300032235 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime Ecozone, Canada - Lake 07-002 Genome Quebec 3300032235 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.42853 -62.419913 500782112 941994 320 64 501 141 0.0 Metagenome 3300000175 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Marine microbial communities from Columbia River, - sample from CR-7km from mouth, GS312-3p0-CR7-chlmax University of South Carolina 3300000175 Metagenome Analysis No Yes mariyasmit@hotmail.com Mariya Smit, Mariya W. Smit No Environmental Aquatic Unclassified Marine Unclassified Marine estuarine 46.167 -124.158 0 0 0 0 0 0 0.0 Metagenome 3300002031 *Microbiome Permanent Draft Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease - BBAY57 3300002031 Metagenome Analysis IDBA-UD + SOAPdenovo + GAA released by JGI data releasing policy No Yes t.thomas@unsw.edu.au Torsten Thomas No Host-associated Algae Ectosymbionts Red algae Unclassified Delisea pulchra -33.59 151.13 404453686 1589382 151 61 345 129 0.0 Metagenome 2084038009 *Microbiome Permanent Draft Freshwater sediment microbial communities from Lake Washington, Seattle, USA, for methane and nitrogen cycles Freshwater sediment microbial communities from Lake Washington, Seattle, for methane and nitrogen Cycles - from flow sorted aerobic no nitrate DOE Joint Genome Institute (JGI) 2084038009 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova Yes 23638358 Environmental Aquatic Lentic Freshwater Sediment Freshwater sediment 47.052 -122.267889 396601732 1059847 436 10 1024 0 Unrestricted 0.0 Metagenome 3300014226 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 220_L4_2014-6-23 San Diego State University 3300014226 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 300626 947 13 4 29 14 0.0 Metagenome 3300000083 *Microbiome Permanent Draft Hot Spring microbial communities from Great Boiling Spring, Nevada Hot spring microbial communities from Great Boiling Spring, Nevada - cellulolytic enrichment S 77C v1 DOE Joint Genome Institute (JGI) 3300000083 Metagenome Analysis Soap denovo and minimus released based on JGI ITS Yes Yes brian.hedlund@unlv.edu, brian.hedlund@unlv.edu; eaeloefadrosh@lbl.gov Brian P. Hedlund, Brian Hedlund; Emiley Eloe-Fadrosh Yes 23555835 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot Spring 40.71458 -119.369659 6.37 63331166 117970 54 0 83 0 Unrestricted 0.0 Metagenome 3300011563 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00372 Weill Cornell Medical College 3300011563 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.93 28878669 35544 11 0 19 0 SRX822343 0.0 Metagenome 3300031859 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25 DOE Joint Genome Institute (JGI) 3300031859 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1006349186 2452988 352 4 569 7 SRX5818556 Unrestricted 11.11 Metagenome 3300024239 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E DOE Joint Genome Institute (JGI) 3300024239 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified deep subsurface sediment 35.7 -98.594 206026064 377630 87 28 134 27 SRX4549812 Unrestricted 19.05 Metagenome 3300014906 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01318 Weill Cornell Medical College 3300014906 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.81 -73.9 19602758 35453 24 0 40 0 SRX823258 0.0 Metagenome 3300046673 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 S3 40-44 DOE Joint Genome Institute (JGI) 3300046673 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.353292 19.0475 490153676 646815 124 3 161 5 Restricted 28.21 Metagenome 3300023110 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (version 2) DOE Joint Genome Institute (JGI) 3300023110 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1146878156 2272290 452 49 694 83 SRX4071758 Unrestricted 23.34 Metagenome 3300046338 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_97 DOE Joint Genome Institute (JGI) 3300046338 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9802 -106.9905 329031182 962988 835 194 1640 264 Restricted 0.0 Metagenome 3300031242 *Microbiome Permanent Draft Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG DOE Joint Genome Institute (JGI) 3300031242 Metagenome Analysis spades v. 3.12.0 Yes Yes rbneum@uw.edu Rebecca Neumann No Host-associated Plants Rhizosphere Roots Soil rhizosphere 47.6516 -122.3045 813004057 2015898 696 11 1183 23 SRX5346102 Unrestricted 7.81 Metagenome 3300013681 *Microbiome Permanent Draft Insectivorous bat viral communities from France Insectivorous bat viral communities from France - b4 Institut Pasteur, Paris, France 3300013681 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Multiple organs Multiple systems Pooled tissues Bat tissue 12224956 23564 15 7 46 12 SRX590185 0.0 Metagenome 3300029485 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001905-95 Beijing Genomics Institute (BGI) 3300029485 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 209044486 253930 124 0 178 0 0.0 Metagenome 3300001236 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media from Eden Landing Ponds, California, USA - A23 M3 DOE Joint Genome Institute (JGI) 3300001236 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Enviromental 37.840854 -122.289843 38242233 74615 52 0 73 0 SRX2865306 Unrestricted 0.0 Metagenome 3300010302 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 325m metaG DOE Joint Genome Institute (JGI) 3300010302 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; sean.crowe@ubc.ca Ramunas Stepanauskas; Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Anoxic lake water -2.0288 29.1756 925895737 1816645 994 4 1641 11 SRX2525295 Unrestricted 0.0 Metagenome 3300009851 *Microbiome Permanent Draft Wood falls microbial communities from Lacaze-Duthiers Canyon, Mediterranean Sea, France Wood falls microbial communities from Lacaze-Duthiers Canyon, Mediterranean Sea, France - SF1ET Molecular Research LP (MR DNA) 3300009851 Metagenome Analysis IDBA_UD released per JGI data release policy Yes Yes pierre.galand@obs-banyuls.fr Pierre Galand No Environmental Aquatic Benthic Marine Wood fall Wood falls 42.4666667 3.4666667 101287167 143020 7 3 12 4 0.0 Metagenome 3300055540 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.19W.12 SIP fraction DOE Joint Genome Institute (JGI) 3300055540 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 154015717 257843 98 59 180 88 Unrestricted 14.25 Metagenome 3300042875 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Jun2017-rr0260 DOE Joint Genome Institute (JGI) 3300042875 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 556075570 836227 205 29 269 31 Unrestricted 18.25 Metagenome 3300032283 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada - Lake 06-217 Genome Quebec 3300032283 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 47.839139 -83.269575 665331685 1434737 358 92 658 177 0.0 Metagenome 3300005748 *Microbiome Permanent Draft Microbial degradation of oil Seawater microbial communities from Vineyard Sound, MA, USA - control T7 University of Wisconsin, Madison 3300005748 Metagenome Analysis velvet released per JGI data release policy No Yes rsimiste@haverford.edu, rlsimister@gmail.com rachel simister, Rachel Simister No Environmental Aquatic Unclassified Marine Unclassified marine 41.4417 -70.7744 104765040 175197 221 0 236 0 0.0 Metagenome 3300020551 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns (SPAdes) DOE Joint Genome Institute (JGI) 3300020551 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 116950212 279058 115 15 197 26 SRX1988899 Unrestricted 0.0 Metagenome 3300048437 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_120530.NP2 DOE Joint Genome Institute (JGI) 3300048437 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 825807623 1827925 569 102 785 188 Unrestricted 12.63 Metagenome 3300017578 *Microbiome Permanent Draft Bras del Port Noviembre 2014 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CM1 Nov 2014 University of Valencia 3300017578 Metagenome Analysis idba.1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Non-marine hypersaline water 38.1922 -0.5918 40781004 132893 2 0 2 0 0.0 Metagenome 3300030231 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine giant viral communities collected during Tara Oceans survey from station TARA_068 - TARA_Y100000741 CEA Genoscope 3300030231 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -31.0266 4.665 1175023996 2851806 406 7 748 14 0.0 Metagenome 3300054053 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin01_30_metaG re-annotation DOE Joint Genome Institute (JGI) 3300054053 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1013325000 1879067 422 11 679 14 SRX3291949 0.0 Metagenome 3300000035 *Microbiome Permanent Draft Hoatzin crop microbial communities from Cojedes, Venezuela Hoatzin crop microbial communities from Cojedes, Venezuela - Epithelial fraction 12 v1 DOE Joint Genome Institute (JGI) 3300000035 Metagenome Analysis Newbler and/or Velvet released based on JGI ITS Yes Yes sgtringe@lbl.gov, maria.dominguez1@upr.edu; fgodoyvitorino@gmail.com Susannah Tringe, Maria Gloria Dominguez-Bello; Filipa Godoy Vitorino No Host-associated Birds Esophagus Digestive system Crop Hoatzin crop 8.956944 -68.299167 1169488613 1338061 8 3 63 3 Unrestricted 0.0 Metagenome 3300002171 *Microbiome Permanent Draft Bioremediated contaminated groundwater microbial communities from North Railroad Avenue plume (NRAP), New Mexico Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample HSE6-23 DOE Joint Genome Institute (JGI) 3300002171 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes reiss@nmt.edu, NNIvanova@lbl.gov; rebecca.reiss@nmt.edu Rebecca Reiss, Natalia Ivanova; Rebecca Reiss Yes 27980706 Environmental Aquatic Groundwater Deep subsurface Contaminated Bioremediated contaminated groundwater 35.9918 -106.0796 213561661 469886 340 2 594 12 SRX2554407 Unrestricted 0.0 Metagenome 3300029433 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 037_10_30_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029433 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 238833741 307015 271 0 392 0 0.0 Metagenome 2014031005 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP12 Calcite Springs, Tower Falls Region v1 DOE Joint Genome Institute (JGI) 2014031005 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23755042 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.90485 -110.404033 7.8 16071904 23346 0 0 0 0 Unrestricted 0.0 Metagenome 3300048758 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River, Colorado, USA - Brdu-_Long DOE Joint Genome Institute (JGI) 3300048758 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 137615888 331469 248 36 420 66 Restricted 13.08 Metagenome 3300043220 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_4500m_C5_20cm25cm (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043220 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 35.689 -123.0778 206675298 344300 124 0 193 0 SRX8383001 Unrestricted 67.98 Metagenome 3300025163 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4571-4 3-6 cm metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025163 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; teske@email.unc.edu Ramunas Stepanauskas; Andreas Teske No Environmental Aquatic Hydrothermal vents Marine Sediment Marine hydrothermal vent 27.0078 -111.4071 612561596 1305276 519 8 815 6 SRX2525221 Unrestricted 0.0 Metagenome 2228664003 *Microbiome Draft Laboratory Nasutitermes corniger gut microbial communities from Florida, USA P3 Gut Segment Termite Single Cell Genome_Treponema sp. T4b from Florida, USA DOE Joint Genome Institute (JGI) 2228664003 Metagenome Analysis Newbler, Velvet released based on JGI ITS No Yes stringe@lbl.gov, phugenholtz@gmail.com Susannah Tringe, Phil Hugenholtz No Host-associated Arthropoda: Insects Hindgut Digestive system Paunch/P3 segment Laboratory Nasutitermes corniger gut 26.135 -80.129 8529942 23486 25 0 148 0 Unrestricted 0.0 Metagenome 3300030380 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_102 - TARA_R100001460 CEA Genoscope 3300030380 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -5.2529 -85.1545 193418294 368073 13 0 22 0 0.0 Metagenome 3300005349 *Microbiome Permanent Draft Hot spring viral communities from Yellowstone National Park, Wyoming, USA Hot spring viral communities from Yellowstone National Park, Wyoming, USA - Crater Hills DOE Joint Genome Institute (JGI) 3300005349 Metagenome Analysis Newbler released based on JGI ITS No Yes sgtringe@lbl.gov, francisco.roberto@inl.gov Susannah Tringe, Frank Roberto No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.6532843 -110.4847409 2 1715145 3125 2 0 4 0 Unrestricted 0.0 Metagenome 3300001460 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-28 DOE Joint Genome Institute (JGI) 3300001460 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 48.9699 -130.6666 360045912 819799 4 1 9 2 SRX2553654 Unrestricted 0.0 Metagenome 3300027610 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027610 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 300133207 732784 212 40 382 70 SRX3312031 Unrestricted 0.0 Metagenome 7000000619 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763759525 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000619 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 15019573 32178 0 0 0 0 0.0 Metagenome 3300031647 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #179 DOE Joint Genome Institute (JGI) 3300031647 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5596 77.8957 823608331 1714025 358 129 478 227 SRX5650083 Unrestricted 0.0 Metagenome 3300015275 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_01AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015275 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 114024075 211130 18 29 20 37 SRX3923853 Unrestricted 10.71 Metagenome 3300049009 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Ob River, Yamalo-Nenets Autonomous Okrug, Russia - Ob' 2004-2 DOE Joint Genome Institute (JGI) 3300049009 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 66.5166 66.6 633926623 1404323 458 143 720 209 Unrestricted 17.07 Metagenome 3300043604 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 065-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043604 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9272 -106.9791 231419078 633110 327 8 647 16 Unrestricted 7.42 Metagenome 7000000546 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 764892411 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000546 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 103077550 183462 0 0 0 0 0.0 Metagenome 3300069297 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Guanica State Forest and Biosphere Reserve, Puerto Rico - GUAN_042-M-20210920-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069297 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tropical forest Soil Unclassified Terrestrial soil 17.970725 -66.863969 2438980885 5845556 1215 33 2486 54 0.0 Metagenome 3300013706 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00836 Weill Cornell Medical College 3300013706 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.71 -73.98 17276830 30233 13 0 15 0 SRX822802 0.0 Metagenome 3300026115 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3827_250 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026115 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic 9.7046 -55.3027 82202555 236040 8 9 23 9 SRX2754206 Unrestricted 0.0 Metagenome 3300015340 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_20JUN2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015340 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 241639122 404775 7 111 16 242 SRX3923068 Unrestricted 7.93 Metagenome 3300011469 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100681 University of Pennsylvania 3300011469 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9124118 25075 14 0 21 0 SRX756413 0.0 Metagenome 3300009458 *Microbiome Permanent Draft Host-associated microbial communities of aphids from plants in several locations around USA Microbial communities of aphids from Asclepias tuberosa in Tucson, AZ, USA - Aphis nerii NM100509 seqcov University of Texas, Austin 3300009458 Metagenome Analysis CLC Genomics released per JGI data release policy Yes Yes becky.chong@utexas.edu Rebecca Chong No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Asclepias tuberosa 32.23184 -110.950699 227172381 112367 1 1 1 1 0.0 Metagenome 3300008547 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159733294 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008547 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 157217036 212763 179 0 274 0 0.0 Metagenome 3300069621 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from LBJ National Grassland , Southern Plains, TX, USA - CLBJ_033-M-20170413-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069621 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 33.40123 -97.57 20798585 60251 65 4 107 5 0.0 Metagenome 3300042139 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0727L_E14_072516_1442 DOE Joint Genome Institute (JGI) 3300042139 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.1836 -97.9974 114965135 308948 247 24 458 30 Unrestricted 7.58 Metagenome 3300050502 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Bulk soil microbial communities from a Populus tree surrounding site in Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 re-annotation DOE Joint Genome Institute (JGI) 3300050502 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Environmental Terrestrial Tree plantation Soil Unclassified Bulk soil 35.8444 -83.9599 955740482 2466198 789 23 1465 40 SRX2841166, SRX2841165, SRX2841167 0.0 Metagenome 3300020711 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 29JUL2008 hypolimnion DOE Joint Genome Institute (JGI) 3300020711 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 93131989 204556 68 5 106 11 Unrestricted 0.0 Metagenome 3300042666 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A45 University of California, Davis 3300042666 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 220190849 621786 300 7 594 7 0.0 Metagenome 3300066287 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_003-M-20130701-COMP-DNA1 re-annotation Argonne National Laboratory 3300066287 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 5545986 15893 43 1 79 0 ERX2133936 0.0 Metagenome 3300013157 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100311 University of Pennsylvania 3300013157 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17005003 43268 12 0 16 0 SRX756590 0.0 Metagenome 3300048565 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Woodchip biofilm microbial communities from lab scale WBR in Cornell University, Ithaca, NY, USA - rep3_drw_p1_w6 DOE Joint Genome Institute (JGI) 3300048565 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 929211100 1797467 530 21 879 52 Unrestricted 8.92 Metagenome 3300011608 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01133 Weill Cornell Medical College 3300011608 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -73.94 25519110 40342 12 0 18 0 SRX823088 0.0 Metagenome 3300006743 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159207311 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006743 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 88414233 131654 98 0 147 0 0.0 Metagenome 3300011487 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100235 University of Pennsylvania 3300011487 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 10738281 27594 17 1 29 0 SRX756666 0.0 Metagenome 3300025776 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP2097 (SPAdes) DOE Joint Genome Institute (JGI) 3300025776 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 14.53 -118.77 88577334 189287 81 6 159 12 SRX1982385 Unrestricted 0.0 Metagenome 3300025931 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025931 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 3402637270 7989805 1478 111 2658 220 SRX2740299 Unrestricted 0.0 Metagenome 3300059734 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1556B-3 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059734 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2022 -123.941 74152461 189067 166 85 288 134 SRX2753743 Unrestricted 0.0 Metagenome 7000000405 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158944319 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000405 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 81329638 144938 0 0 0 0 0.0 Metagenome 3300007840 *Microbiome Permanent Draft Microbial communities from hot springs in different districts of India Microbial communities from hot springs in Kheda district, Gujarat, India - Lasundra Anand Agricultural University 3300007840 Metagenome Analysis Velvet released per JGI data release policy No Yes ssunil48@gmail.com Sunil Bhavsar No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 22.9171197 73.1452867 95833648 449979 1892 3 3592 12 0.0 Metagenome 3300033473 *Microbiome Permanent Draft Meromitic Lake A Freshwater microbial communities from meromitic lake A, Ellesmere Island, Canada - Sample 34m re-analysis2 Laval University 3300033473 Metagenome Analysis Megahit v. 1.0.5 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 82.99445 -75.443367 1258563917 2854791 940 4 1549 12 0.0 Metagenome 3300002056 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - A-A4 J. Craig Venter Institute (JCVI) 3300002056 Metagenome Analysis released per JGI data release policy No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 177665328 546516 46 9 148 25 0.0 Metagenome 3300001182 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 DOE Joint Genome Institute (JGI) 3300001182 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 36853430 112932 164 41 254 70 SRX3312019 Unrestricted 0.0 Metagenome 3300040006 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from LBJ National Grassland , Southern Plains, TX, USA - CLBJ_034-M-20170413-COMP-DNA1 Battelle Memorial Institute 3300040006 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 33.40123 -97.57 16639468 47162 54 6 106 7 0.0 Metagenome 3300003452 *Microbiome Permanent Draft Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S10-DC09A 3300003452 Metagenome Analysis released per JGI data releasing policy No Yes julie.champagne@cnrc-nrc.gc.ca Julie Champagne No Environmental Aquatic Neritic zone/Coastal water Marine Sediment Marine sediment 53.6667 -129.1333 40278036 163605 54 3 93 5 0.0 Metagenome 3300023490 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_70C University of California, Irvine 3300023490 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 87601834 90744 17 0 20 0 0.0 Metagenome 3300014177 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Honduras to Iowa, USA - H7 Iowa State University 3300014177 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 3584162 6745 0 3 0 0 SRX1150287 0.0 Metagenome 3300045557 *Microbiome Permanent Draft Metagenomes of anaerobic enrichment cultures that dechlorinate hexachlorocyclohexane isomers Lab-enriched soil microbial communities from a contaminated agricultural site, Guadeloupe, France - GT4SUHCH hmsp Beijing Genomics Institute (BGI), Genome Quebec 3300045557 Metagenome Analysis spades v. 3.14.1. Yes Yes elizabeth.edwards@utoronto.ca; camillaln@gmail.com Elizabeth A. Edwards; Camilla Nesb? No Environmental Terrestrial Unclassified Soil Contaminated soil 16.249 -61.565 142393950 214414 53 3 90 6 0.0 Metagenome 3300027299 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepB_8d DOE Joint Genome Institute (JGI) 3300027299 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 144938857 257398 81 10 106 10 SRX5245245 Unrestricted 18.72 Metagenome 7000000290 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 246515023 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000290 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 50543409 110055 0 0 0 0 0.0 Metagenome 3300028631 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Arg DOE Joint Genome Institute (JGI) 3300028631 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 305211558 510040 244 3 348 4 SRX5281752 Unrestricted 22.53 Metagenome 3300006951 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC4 2012 metaG DOE Joint Genome Institute (JGI) 3300006951 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jkjarett@lbl.gov, rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca Jessica Jarett, Ramunas Stepanauskas; Peter Dunfield No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 49.9543 -116.5155 7.08 49378279 81447 71 0 69 0 SRX2839017 Unrestricted 0.0 Metagenome 3300042052 *Microbiome Permanent Draft Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - S_c24.3 Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042052 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1247 -89.1411 839264449 860421 6 6 8 11 SRX5234780 0.0 Metagenome 3300043456 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-413 Genome Quebec 3300043456 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 51.008286 -101.106274 1051101452 2509355 369 56 512 135 0.0 Metagenome 3300050489 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation DOE Joint Genome Institute (JGI) 3300050489 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Host-associated Plants Endosphere Roots Unclassified Populus endosphere 35.8443 -83.9607 1560286742 4195031 1449 28 2727 41 SRX2748470 0.0 Metagenome 3300029325 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 016_6_7_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029325 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 132976095 180940 122 0 178 0 0.0 Metagenome 3300044476 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - MER1-9-12-19 DOE Joint Genome Institute (JGI) 3300044476 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.3727 -120.5402 643208557 1555265 666 38 1155 47 Restricted 7.33 Metagenome 3300044611 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME22Aug2006D15-rr0951 DOE Joint Genome Institute (JGI) 3300044611 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1375604178 2049360 490 33 650 52 Unrestricted 17.86 Metagenome 3300010335 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015 DOE Joint Genome Institute (JGI) 3300010335 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 1179241595 2662680 874 40 1631 77 SRX2524976 Unrestricted 0.0 Metagenome 3300022427 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1OPP3 JM75 AGRF 3300022427 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 54224805 91875 41 2 52 4 0.0 Metagenome 3300005664 *Microbiome Permanent Draft Freshwater viral communities from Emiquon reservoir, Havana, Illinois, USA Freshwater viral communities from Emiquon reservoir, Havana, Illinois, USA University of Illinois, Urbana-Champaign 3300005664 Metagenome Analysis Megahit released per JGI data release policy No Yes camila_jnd@yahoo.com.br, carlos-shanley@txstate.edu Camila Carlos, Camila Carlos-Shanley No Environmental Aquatic Lotic Freshwater Unclassified aquatic 40.362238 -90.047137 231193605 449298 1 0 2 0 0.0 Metagenome 3300008964 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1551A-02 DOE Joint Genome Institute (JGI) 3300008964 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.187 -123.8837 366723967 705090 402 25 646 44 SRX2753725 Unrestricted 6.79 Metagenome 3300025247 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP-91 (SPAdes) DOE Joint Genome Institute (JGI) 3300025247 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com; sacinas@icm.csic.es Matthew Sullivan; Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -5.7497 -170.7411 142021326 303920 116 2 173 0 SRX4915143 Unrestricted 0.0 Metagenome 3300033278 *Microbiome Permanent Draft Meromitic Lake A Freshwater microbial communities from meromitic lake A, Ellesmere Island, Canada - Sample 55m re-sequencing Laval University 3300033278 Metagenome Analysis SPADES v. 3.10.1 released by JGI data releasing policy Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 82.99445 -75.443367 1012797547 4397419 1069 9 2358 6 0.0 Metagenome 3300050467 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - E1NW0 DOE Joint Genome Institute (JGI) 3300050467 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 206696012 368672 194 49 367 77 Unrestricted 17.35 Metagenome 3300032607 *Microbiome Permanent Draft Meromitic Lake A Freshwater microbial communities from meromitic lake A, Ellesmere Island, Canada - Sample 2m Laval University 3300032607 Metagenome Analysis Megahit v. 1.0.5 released by JGI data releasing policy Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 82.99445 -75.443367 683617662 1348400 205 36 371 87 0.0 Metagenome 3300060669 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_042-O-20210803-comp-1 DOE Joint Genome Institute (JGI) 3300060669 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tundra Soil Unclassified Terrestrial soil 68.664072 -149.381292 1516560478 2557888 417 95 672 145 Unrestricted 13.87 Metagenome 3300024417 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 62D DOE Joint Genome Institute (JGI) 3300024417 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 364493669 752520 267 37 369 56 SRX4466379 Unrestricted 13.46 Metagenome 3300065608 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 802 in Cardston County, Alberta, Canada - S00JY_0362 Microbiome Insights 3300065608 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.264899 -113.060598 56763609 87555 42 1 81 1 0.0 Metagenome 3300039319 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 195_4M Beijing Genomics Institute (BGI) 3300039319 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 56901285 71863 27 0 48 0 ERX490990 0.0 Metagenome 3300023232 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - IR.F.S.T0 DOE Joint Genome Institute (JGI) 3300023232 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 112515693 246187 135 6 267 9 SRX4415254, SRX7705506 Unrestricted 0.0 Metagenome 3300005960 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_SurfaceA_ad_6m_LV_A DOE Joint Genome Institute (JGI) 3300005960 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 745963235 2099710 746 26 1277 48 SRX2775744 Unrestricted 0.0 Metagenome 7000000432 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763840445 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000432 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 90274742 166395 0 0 0 0 0.0 Metagenome 2119805006 *Microbiome Permanent Draft Hot spring nanoarchaeal communities from Obsidian Pool, Yellowstone National Park Enrichment of Obsidian Pool sample HudsonAlpha Institute for Biotechnology, Oak Ridge National Laboratory 2119805006 Metagenome Analysis released per JGI data release policy No Yes podarm@ornl.gov Mircea Podar No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6 -110.433 53423776 139910 76 0 168 0 0.0 Metagenome 3300015049 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR11_S2_MetaG DOE Joint Genome Institute (JGI) 3300015049 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 61.2413 21.4947 110630564 238850 145 0 297 2 SRX3603989 Unrestricted 108.3 Metagenome 3300027137 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8d DOE Joint Genome Institute (JGI) 3300027137 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 143208950 247900 131 9 179 16 SRX5245196 Unrestricted 13.76 Metagenome 3300010228 *Microbiome Permanent Draft Freshwater microbial communities enriched with nitrile substrates Freshwater aquifer microbial community from Bangor, North Wales, UK, enriched with nitrile substrate, replicate 2 Fidelity Systems Inc 3300010228 Metagenome Analysis Phred/Phrap/Consed v. 23.0 released per JGI data release policy Yes Yes stepan.toshchakov@gmail.com Stepan Toshchakov No Environmental Aquatic Groundwater Deep subsurface Unclassified freshwater 53.23 -4.13 104504819 291033 42 2 102 1 0.0 Metagenome 3300001853 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - LP-49 DOE Joint Genome Institute (JGI) 3300001853 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 50.0003 -144.9998 82626699 185091 46 0 85 1 Unrestricted 0.0 Metagenome 3300040241 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Ozarks Complex, AL, USA - LENO_005-M-20160830-COMP-DNA1 Battelle Memorial Institute 3300040241 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.85388 -88.16122 7228748 23751 58 2 101 1 0.0 Metagenome 2022920013 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP7 Chocolate Pots v2 (version 2) DOE Joint Genome Institute (JGI) 2022920013 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23761787 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.710087 -110.7413395 6 27959912 41922 610 0 18 0 Unrestricted 0.0 Metagenome 3300071150 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone National Park, Wyoming, USA - YELL_048-M-20190820-COMP-DNA1 3300071150 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 9895595 31185 90 16 195 23 0.0 Metagenome 3300049300 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA3 DOE Joint Genome Institute (JGI) 3300049300 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 175080476 470639 303 3 540 5 Unrestricted 6.49 Metagenome 3300002723 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A4-11 DOE Joint Genome Institute (JGI) 3300002723 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 461346 1563 43 0 79 0 SRX1991136 Unrestricted 0.0 Metagenome 3300028129 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 42D DOE Joint Genome Institute (JGI) 3300028129 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 298755391 550939 171 34 242 77 SRX5171612 Unrestricted 23.33 Metagenome 3300008660 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 604812005 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008660 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 65121422 95164 61 0 87 0 0.0 Metagenome 3300030089 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from colorectal cancer patient in Boston, USA - MG100134 University of Michigan 3300030089 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 42.36 -71.06 34659670 66560 51 0 78 0 0.0 Metagenome 3300029238 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019821-26 Beijing Genomics Institute (BGI) 3300029238 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 192959369 233470 135 0 222 0 0.0 Metagenome 3300012648 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00430 Weill Cornell Medical College 3300012648 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.88 43270213 63054 29 1 47 2 SRX822399 0.0 Metagenome 3300039086 *Microbiome Draft Bacterial communities from a shark tank, Hagenbeck Zoo, Hamburg, Germany Seawater microbial communities from a shark tank, Hagenbeck Zoo, Hamburg, Germany - S1 HPI Heinrich-Pette-Institut 3300039086 Metagenome Analysis Velvet v. 3.3 released by JGI data releasing policy Yes Yes wolfgang.streit@uni-hamburg.de Wolfgang Streit No Environmental Aquatic Unclassified Marine Unclassified Marine 53.596389 9.937778 74400095 86713 15 0 35 0 0.0 Metagenome 3300021431 *Microbiome Draft Cattle and sheep rumen microbial communities from New Zealand, for comparative studies Sheep rumen microbial communities from New Zealand - Tag 1435 SPADES assembly DOE Joint Genome Institute (JGI) 3300021431 Metagenome Analysis SPADES 3.11.0 released per Natalia and Tijana Yes Yes cfan@lbl.gov; NNIvanova@lbl.gov Hei Fan; Natalia Ivanova No Host-associated Mammals Stomach Digestive system Rumen Cattle and sheep rumen -42.26 171.6 2473673371 4387329 1619 17 2640 35 0.0 Metagenome 3300042297 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME29Apr2016-rr0435 DOE Joint Genome Institute (JGI) 3300042297 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 637343477 949748 217 49 285 69 Unrestricted 15.74 Metagenome 3300040114 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 094B_R1 University of Maryland 3300040114 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.71711111 27.1175 12119378 29309 38 0 77 1 0.0 Metagenome 3300030067 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from colorectal cancer patient in Houston, USA - MG100128 University of Michigan 3300030067 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 29.76 -95.37 26928851 52086 67 0 127 0 0.0 Metagenome 3300050148 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D10_RHK1_2_to_RHK1 DOE Joint Genome Institute (JGI) 3300050148 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.154 -124.211 517520211 675515 219 93 357 143 Unrestricted 20.25 Metagenome 3300048050 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - N.F.S.T100 (version 2) DOE Joint Genome Institute (JGI) 3300048050 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3533 19.0466 362294574 636089 396 3 586 4 Restricted 0.0 Metagenome 3300060408 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210607_11_01 DOE Joint Genome Institute (JGI) 3300060408 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 992732216 1413481 327 248 451 316 Unrestricted 25.36 Metagenome 3300033552 *Microbiome Permanent Draft Extreme environments viral communities from various locations Glacier ice microbial communities from Ngari, Tibet, China - 15_GP2_131.5 DOE Joint Genome Institute (JGI) 3300033552 Metagenome Analysis spades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Ice Freshwater Glacier ice 35.2833 81.4833 346936465 744958 217 40 238 54 SRX7543085 Unrestricted 22.31 Metagenome 3300061762 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - FS3.061018 DOE Joint Genome Institute (JGI) 3300061762 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.5325 -110.7972 8-9 155455323 362863 97 0 129 0 Unrestricted 137.32 Metagenome 3300070373 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_001-O-20180710-COMP-DNA1 3300070373 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 52229972 152995 85 7 153 21 0.0 Metagenome 3300030316 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from healthy individual in Houston, USA - MG100157 University of Michigan 3300030316 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 29.76 -95.37 29410573 44663 42 0 71 1 0.0 Metagenome 3300042621 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Reticulitermes flavipes from BAM Federal Institute for Materials Research and Testing, Berlin, Germany - Rs511 Eurofins MWG Operon 3300042621 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 52.443245 13.287523 1135084127 1149185 151 90 205 69 0.0 Metagenome 3300027686 *Microbiome Permanent Draft Marine microbial communities from the West Antarctic Peninsula, for metatranscriptomic analysis Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG108-DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027686 Metagenome Analysis spades v. 3.11.1 Yes Yes mattcott@udel.edu Matthew T. Cottrell No Environmental Aquatic Coastal Marine Unclassified Marine -64.8156 -64.0406 473729960 1045403 195 34 332 48 SRX2848426 Unrestricted 0.0 Metagenome 3300012356 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG DOE Joint Genome Institute (JGI) 3300012356 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.5673 -123.4758 2221389740 4432776 1298 64 2260 120 SRX3372715 Unrestricted 0.0 Metagenome 3300070638 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_041-M-20180731-COMP-DNA1 3300070638 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 30701743 93097 101 12 227 17 0.0 Metagenome 3300011399 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT842_2 DOE Joint Genome Institute (JGI) 3300011399 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9779 -107.002 158308176 402017 321 29 698 62 SRX3539428 Unrestricted 0.0 Metagenome 3300054047 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_11_10 re-annotation DOE Joint Genome Institute (JGI) 3300054047 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 226855903 507917 218 15 397 30 SRX3003282 0.0 Metagenome 3300034168 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06Apr2016-rr0183 DOE Joint Genome Institute (JGI) 3300034168 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1229026591 2455718 438 164 626 258 SRX7622494 Unrestricted 11.56 Metagenome 3300028145 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK04 DOE Joint Genome Institute (JGI) 3300028145 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 237372794 620671 298 32 546 42 SRX5245456 Unrestricted 7.18 Metagenome 3300045911 *Microbiome Permanent Draft Microbial mat bacterial communities from hot springs in Waikite Valley, Taupo Volcanic Zone, New Zealand Microbial mat bacterial communities from hot spring in Waikite Valley, New Zealand - LMW_ETR_NZ_2018_Waikite_2_1 DOE Joint Genome Institute (JGI) 3300045911 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes LMWARD@post.harvard.edu Lewis Ward No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats microbial mat -38.3276 176.3016 796576723 1022684 335 6 439 10 Unrestricted 44.57 Metagenome 3300029748 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37308R1 Beijing Genomics Institute (BGI) 3300029748 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 223785323 302424 199 0 279 0 0.0 Metagenome 3300011501 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00552 Weill Cornell Medical College 3300011501 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.64 -73.9 23054983 29187 12 0 13 0 SRX822519 0.0 Metagenome 3300049979 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Leaf microbial communities from farm grass in Deerfield, Massachusetts, United States - Ryegrass_Phyllosphere_Drought3 (version 4) DOE Joint Genome Institute (JGI) 3300049979 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 42.4788 -72.5788 1183054751 2171731 368 239 585 356 Restricted 0.0 Metagenome 3300022593 *Microbiome Permanent Draft Thermokarst lakes Summer vs Winter Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Winter W2 Laval University 3300022593 Metagenome Analysis IDBA-UD 1.1 released by Adrien Vigneron No Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 55.1491 -77.4866 310657769 736621 368 1 678 4 0.0 Metagenome 3300042783 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_1_29 NMDC pilot DOE Joint Genome Institute (JGI) 3300042783 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 14634674 30029 41 3 73 5 SRX2924864 0.0 Metagenome 3300006517 *Microbiome Permanent Draft Sludge microbial communities from wastewater anaerobic digester in Oakland, CA, USA - phosphite and CO2 enriched Sludge microbial communities from wastewater anaerobic digester in Oakland, CA, USA - phosphite and CO2 enriched QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300006517 Metagenome Analysis Megahit v 1.0.2 released per submitter's request No Yes jdcoates@berkeley.edu John Coates Yes 29183985 Engineered Wastewater Unclassified Anaerobic digestor Unclassified Wastewater 37.825917 -122.295833 8 50951843 65859 79 0 80 0 0.0 Metagenome 3300000633 *Microbiome Permanent Draft Abyssal marine microbial communities from the Mediterranean Sea Abyssal marine microbial communities from the Mediterranean Sea - kryos-f2 Fidelity Systems Inc 3300000633 Metagenome Analysis released per JGI data release policy No Yes francesco.smedile@iamc.cnr.it, francesco.smedile14@gmail.com francesco smedile, Francesco Smedile No Environmental Aquatic Oceanic Marine Abyssal plane Abyssal marine 34.93 22.22 0 0 0 0 0 0 0.0 Metagenome 3300001390 *Microbiome Permanent Draft Hydrothermal vent microbial communities from the Southwest Indian Ridge SMAR1 3300001390 Metagenome Analysis released by JGI data releasing policy No Yes huiluocao@gmail.com Huiluo Cao No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent 25572676 46148 27 0 35 0 0.0 Metagenome 3300028538 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 8 Selected contigs with viral hallmark genes 2 Autonomous University of Barcelona 3300028538 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 2141600 2989 0 0 0 0 0.0 Metagenome 3300048611 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT_PTT1_AUG19_90cm DOE Joint Genome Institute (JGI) 3300048611 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9883 -108.4003 523846700 1111602 574 4 1033 10 Restricted 10.38 Metagenome 3300021352 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 150m 12015 DOE Joint Genome Institute (JGI) 3300021352 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.7468 -122.0193 950794943 2336440 698 141 1139 304 SRX4010480 Unrestricted 15.48 Metagenome 3300025851 *Microbiome Permanent Draft Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico and Hudson Canyon, USA Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM9D Gulf of Mexico (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025851 Metagenome Analysis spades v. 3.11.1 Yes Yes mcredmond@uncc.edu Molly C. Redmond No Environmental Aquatic Cold seeps Marine Unclassified Methane seep mesocosm 27.37 -90.57 884533716 1348690 612 2 646 1 Unrestricted 0.0 Metagenome 3300000378 *Microbiome Permanent Draft Bovine rumen microbial communities from Waikato, New Zealand Bovine rumen microbial communities from Waikato, New Zealand Macrogen 3300000378 Metagenome Analysis Unknown released per JGI data release policy No Yes christina.moon@agresearch.co.nz Christina Moon No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -37.76549 175.363764 3636217 11168 1 2 3 6 0.0 Metagenome 3300037435 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 10-14 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037435 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3535 19.0472 877901429 1809426 293 26 550 45 SRX4415344, SRX8128073 Unrestricted 0.0 Metagenome 3300034115 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17 DOE Joint Genome Institute (JGI) 3300034115 Metagenome Analysis metaspades v. 3.13.0 Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Aquatic Sediment Floodplain Unclassified sediment 38.9229 -106.9499 568783812 1393564 392 9 713 14 SRX7631470 Unrestricted 6.72 Metagenome 3300005433 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45B DOE Joint Genome Institute (JGI) 3300005433 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 443849383 1287259 420 455 628 896 SRX3194967 Unrestricted 0.0 Metagenome 3300014801 *Microbiome Permanent Draft Aquatic microbial communities from drinking water treatment system in Nanjing, China Aquatic microbial communities from drinking water treatment system in Nanjing, China - Filtered water - FW Nanjing University 3300014801 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Drinking water Freshwater Unclassified Aquatic 86538123 228096 53 2 126 6 SRX130300 0.0 Metagenome 3300054989 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 P3 60-64 (version 2) DOE Joint Genome Institute (JGI) 3300054989 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3535 19.0473 505637650 710297 187 6 258 5 Restricted 0.0 Metagenome 3300009163 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG DOE Joint Genome Institute (JGI) 3300009163 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 45.4091 -72.0994 1167093294 2124609 607 62 929 115 SRX2996439 Unrestricted 0.0 Metagenome 3300035217 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2013_2000m DOE Joint Genome Institute (JGI) 3300035217 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 50.0 -145.0 486018492 1163520 400 57 626 84 SRX8188381 Unrestricted 13.71 Metagenome 3300047630 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA114b-BCT DOE Joint Genome Institute (JGI) 3300047630 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6779 -83.4786 552300680 1329201 245 24 476 32 Unrestricted 9.59 Metagenome 3300040976 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - BAL1 Michigan State University 3300040976 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 13.296667 -104.801667 66905485 188964 3 0 6 0 0.0 Metagenome 3300069528 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_004-O-20160803-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069528 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 25294948 73098 53 10 96 25 0.0 Metagenome 3300007502 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764285508 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007502 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 56754890 72125 48 0 57 0 0.0 Metagenome 3300026453 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 56D DOE Joint Genome Institute (JGI) 3300026453 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 184831355 367275 133 17 184 29 SRX4466257 Unrestricted 17.67 Metagenome 7000000351 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763536994 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000351 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 113056216 184209 0 0 0 0 0.0 Metagenome 7000000724 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human throat microbial communities from NIH, USA - visit 1, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000724 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human 3847569 5735 0 0 0 0 SRX024968 0.0 Metagenome 3300014669 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01201 Weill Cornell Medical College 3300014669 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.83 -73.91 26758890 50540 21 0 20 0 SRX823156 0.0 Metagenome 3300000779 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 hypolimnion v2 (version 2) DOE Joint Genome Institute (JGI) 3300000779 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.0412 -89.6864 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300014136 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Thailand to Iowa, USA - T9 Iowa State University 3300014136 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 39321627 81413 0 2 0 0 SRX1150304 0.0 Metagenome 2067725004 *Microbiome Permanent Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Kansas Corn soil v1 DOE Joint Genome Institute (JGI) 2067725004 Metagenome Analysis Velvet released based on JGI ITS No Yes janet.jansson@pnnl.gov Janet Jansson Yes 30158906 Environmental Terrestrial Unclassified Soil Grasslands Soil 39.211666 -96.594768 6.6 334907586 941175 119 0 206 0 Unrestricted 0.0 Metagenome 3300057035 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F1L_30_32 DOE Joint Genome Institute (JGI) 3300057035 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.95358208 -81.6734609 1937024344 2874629 714 0 1108 0 Unrestricted 14.36 Metagenome 3300025458 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_165m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025458 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 226259254 419550 171 4 261 6 Unrestricted 0.0 Metagenome 3300017671 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - G13-10 University of Michigan 3300017671 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.39651 -85.40936 27943451 40483 24 0 35 1 0.0 Metagenome 3300013143 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100515 University of Pennsylvania 3300013143 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14975413 25263 8 5 15 7 SRX756239 0.0 Metagenome 3300028417 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in the Atlantic and Pacific Ocean Hydrothermal vent microbial communities from East Pacific Rise, Pacific Ocean - 4281-140 DOE Joint Genome Institute (JGI) 3300028417 Metagenome Analysis spades v. 3.11.1 Yes Yes pgirguis@oeb.harvard.edu Peter Girguis No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent 9.8384 -104.2913 406215226 718778 401 3 622 4 SRX5246603 Unrestricted 31.53 Metagenome 3300003216 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA DOE Joint Genome Institute (JGI) 3300003216 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 237296210 483358 353 132 560 196 SRX2569215 Unrestricted 0.0 Metagenome 3300029349 *Microbiome Permanent Draft Freshwater microbial communities from Klamath Basin, USA Freshwater microbial communities from Iron Gate Dam, Klamath Basin, California, USA - IR103 Oregon State University 3300029349 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.93 -122.44 54048353 106763 70 11 110 23 0.0 Metagenome 3300006438 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2 of subject 763961826 replicate 2 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300006438 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 16139618 32632 16 3 27 8 SRX098555, SRX024155 0.0 Metagenome 3300037567 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR09_6 DOE Joint Genome Institute (JGI) 3300037567 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Crustal Fluids crustal fluids 47.7626 -127.7592 990873269 2197429 823 199 1347 330 SRX9096382 Unrestricted 17.88 Metagenome 3300011798 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00727 Weill Cornell Medical College 3300011798 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.7 -74.0 37641661 59883 18 0 36 0 SRX822694 0.0 Metagenome 3300001126 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0440 DOE Joint Genome Institute (JGI) 3300001126 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -22.97 -36.95 22609154 53713 47 17 97 26 SRX1983163 Unrestricted 0.0 Metagenome 3300052804 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_CO_0C2D DOE Joint Genome Institute (JGI) 3300052804 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0707 10.44455 465656615 1235446 408 44 756 59 Unrestricted 7.17 Metagenome 3300064908 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 703 in Westerose, Alberta, Canada - S00JY_0235 Microbiome Insights 3300064908 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.55466504 -113.5615402 72264410 106036 46 0 88 0 0.0 Metagenome 3300049413 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MC30 DOE Joint Genome Institute (JGI) 3300049413 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 60310404 148769 237 5 481 3 Unrestricted 16.03 Metagenome 3300021130 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 16OCT2007 epilimnion DOE Joint Genome Institute (JGI) 3300021130 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 102176888 212311 100 11 170 16 Unrestricted 0.0 Metagenome 3300025737 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC078_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025737 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 42.35 -70.96 642023432 1076284 587 2 834 1 SRX2338984 Unrestricted 0.0 Metagenome 3300037589 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - ARW7_20151117 DOE Joint Genome Institute (JGI) 3300037589 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 348434664 493751 169 11 243 10 SRX9140304 Unrestricted 40.86 Metagenome 3300006106 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Jul07 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006106 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 246610190 682215 184 120 319 271 SRX2565287 Unrestricted 0.0 Metagenome 2236661024 *Microbiome Permanent Draft Human oral microbial communities from Stanford University, California, USA (12) Human oral microbial communities from Stanford University, California, USA - TM7-9 pangenome assembly 1 Oak Ridge National Laboratory 2236661024 Metagenome Analysis JGI single cell assembly pipeline released per JGI data release policy No Yes podarm@ornl.gov Mircea Podar No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral 35.92634 -84.31646 10420506 11560 7 0 14 0 0.0 Metagenome 3300038860 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark - 1169-PRJ1066-RL-Sewage-82_S11_L001 Technical University of Denmark 3300038860 Metagenome Analysis Yes Yes No Engineered Wastewater Unclassified Sewage Unclassified Sewage 55.694986 12.615026 12290593 28109 74 0 103 1 ERX1584012 0.0 Metagenome 3300056754 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - APS4_18C_T0 DOE Joint Genome Institute (JGI) 3300056754 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 2078404932 2935179 548 118 693 175 Unrestricted 15.86 Metagenome 3300020346 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000674 (ERX556057-ERR599069) CEA Genoscope 3300020346 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -9.1552 -140.5284 302695811 757483 353 26 522 40 0.0 Metagenome 3300031653 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-90 DOE Joint Genome Institute (JGI) 3300031653 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh sediment 42.722 -70.847 670008700 1271144 529 3 834 2 SRX6466914 Unrestricted 11.62 Metagenome 3300038572 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark - 1539-PRJ1066-RD-Sewage-93_S6_L001 Technical University of Denmark 3300038572 Metagenome Analysis Yes Yes No Engineered Wastewater Unclassified Sewage Unclassified Sewage 55.640494 12.5058209 22448093 49284 104 1 128 3 ERX1584034 0.0 Metagenome 3300043070 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - HLP_101317 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043070 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.896 -89.3636 3673012 11730 35 5 60 9 SRX9381783 Unrestricted 36.52 Metagenome 3300014687 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01370 Weill Cornell Medical College 3300014687 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.65 -73.99 37584083 65461 18 0 32 0 SRX823310 0.0 Metagenome 3300001672 *Microbiome Permanent Draft Wastewater treatment plant microbial communities from Luxembourg S3rna University of Luxembourg 3300001672 Metagenome Analysis idba-tran released per JGI data release policy No Yes magdalena.calusinska@list.lu Magdalena Calusinska No Engineered WWTP Unclassified Wastewater Unclassified Wastewater treatment plant 49.514167 6.017925 7.29 5535385 17553 4147 280 12451 520 0.0 Metagenome 3300009931 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R7 University of New South Wales 3300009931 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 98764222 164471 69 1 87 3 0.0 Metagenome 3300009776 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC030_MetaG DOE Joint Genome Institute (JGI) 3300009776 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.3 -88.15 910918723 1761190 748 7 1226 10 SRX2338798 Unrestricted 0.0 Metagenome 3300002807 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A3-10 DOE Joint Genome Institute (JGI) 3300002807 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 255653 866 39 0 58 2 SRX1991112 Unrestricted 0.0 Metagenome 3300032125 *Microbiome Permanent Draft Extreme environments viral communities from various locations Cryopeg brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - CB4 2018 DOE Joint Genome Institute (JGI) 3300032125 Metagenome Analysis spades v. 3.12.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Coastal Marine Unclassified cryopeg brine 71.2944 -156.7153 71298202 139779 89 8 115 10 SRX5809175 Unrestricted 507.34 Metagenome 3300013696 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100531 University of Pennsylvania 3300013696 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 10156112 26412 32 10 54 29 SRX756223 0.0 Metagenome 3300049772 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E11_B_4_control DOE Joint Genome Institute (JGI) 3300049772 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 160118499 351362 280 17 577 34 Unrestricted 11.68 Metagenome 3300007148 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge Stylissa sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - st43is University of New South Wales 3300007148 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au, e.botte@aims.gov.au; n.webster@aims.gov.au Nicole Webster, Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Sylissa sp. (marine sponge) -9.8241 150.825833 135475704 333785 24 10 49 18 0.0 Metagenome 3300012479 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.yng.030610 DOE Joint Genome Institute (JGI) 3300012479 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Environmental Terrestrial Unclassified Soil Unclassified unplanted soil 35.9076 -79.0506 76441298 209084 154 4 352 13 SRX3527488 Unrestricted 0.0 Metagenome 3300011774 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00363 Weill Cornell Medical College 3300011774 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.64 -74.07 32919618 57446 15 0 33 0 SRX822335 0.0 Metagenome 3300041411 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 DOE Joint Genome Institute (JGI) 3300041411 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.8942 -103.685 614578645 1473798 578 44 997 94 SRX14829555 Unrestricted 14.38 Metagenome 3300036417 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T75 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036417 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 112690615 208039 138 0 241 0 SRX4415308, SRX7705660 Unrestricted 0.0 Metagenome 3300001099 *Microbiome Permanent Draft Abyssal plane microbial communities from Cape Matapan matapan 454 Life Sciences 3300001099 Metagenome Analysis released per JGI data release policy No Yes francesco.smedile@iamc.cnr.it, francesco.smedile14@gmail.com francesco smedile, Francesco Smedile No Environmental Aquatic Oceanic Marine Unclassified Abyssal plane 36.34 21.07 0 0 0 0 0 0 0.0 Metagenome 3300041676 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_273 MetaG AgResearch, New Zealand, Mosgeil 3300041676 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1416710512 3141543 323 29 1179 43 0.0 Metagenome 3300012541 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100783 University of Pennsylvania 3300012541 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 10014939 15678 7 3 6 2 SRX756071 0.0 Metagenome 3300023087 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG (version 2) DOE Joint Genome Institute (JGI) 3300023087 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1018150541 1954498 453 50 633 87 SRX4071814 Unrestricted 28.67 Metagenome 3300049218 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Western Region, Iceland - Sphagnum magellanicum C2_MAG_ICE DOE Joint Genome Institute (JGI) 3300049218 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 2278009231 2922319 530 150 718 227 SRX14752534 Unrestricted 20.94 Metagenome 3300070531 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Arizona, USA - SRER_052-M-20190806-COMP-DNA1 Battelle Memorial Institute 3300070531 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.909531 -110.833359 8.64-8.74 9928984 32493 50 11 114 12 0.0 Metagenome 3300007535 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_A_D2_MG DOE Joint Genome Institute (JGI) 3300007535 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4969 -122.1331 660086763 1224367 714 3 1143 6 SRX2523447 Unrestricted 0.0 Metagenome 3300025253 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025253 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 131661349 180795 56 0 56 0 SRX2770681 Unrestricted 0.0 Metagenome 3300049265 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA5 DOE Joint Genome Institute (JGI) 3300049265 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 369327477 921393 371 2 737 10 Unrestricted 6.88 Metagenome 3300042528 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME09Aug2011-rr0849 DOE Joint Genome Institute (JGI) 3300042528 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 772947396 1242229 384 42 520 77 Unrestricted 16.4 Metagenome 3300002470 *Microbiome Permanent Draft Freshwater microbial community from Sao Paulo Zoo Lake, Brazil Freshwater microbial communities from San Paulo Zoo lake, Brazil - FEB 2013 3300002470 Metagenome Analysis SoapDeNovo released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Lake -23.651072 -46.620675 151330886 424088 7 2 36 5 0.0 Metagenome 3300046102 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_2 DOE Joint Genome Institute (JGI) 3300046102 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 211913530 576893 732 59 1288 92 Unrestricted 0.0 Metagenome 3300059422 *Microbiome Permanent Draft Sorghum rhizosphere and bulk soil microbial communities from University of Arizona Maricopa Agricultural Center, AZ, USA Soil microbial communities from sorghum plot in University of Arizona Maricopa Agricultural Center, AZ, USA - 7_0-15_MAC_20210810 DOE Joint Genome Institute (JGI) 3300059422 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Agricultural land Soil Unclassified Soil 33.07735 -111.974819 538622137 1404622 701 10 1306 22 Unrestricted 7.05 Metagenome 3300005325 *Microbiome Permanent Draft Bioremediated contaminated groundwater microbial communities from North Railroad Avenue plume (NRAP), New Mexico Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-47 DOE Joint Genome Institute (JGI) 3300005325 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, NNIvanova@lbl.gov; rebecca.reiss@nmt.edu Natasha Ivanova, Natalia Ivanova; Rebecca Reiss Yes 27980706 Environmental Aquatic Groundwater Deep subsurface Contaminated Bioremediated contaminated groundwater 35.992 -106.0797 295078100 424336 349 0 540 5 SRX2554387 0.0 Metagenome 3300070817 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Arizona, USA - SRER_043-M-20170815-COMP-DNA1 3300070817 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 1880905 6201 34 0 54 2 0.0 Metagenome 3300014203 *Microbiome Permanent Draft Leachate and groundwater microbial communities from a municipal landfill and adjacent aquifer in Southern Ontario, Canada Groundwater microbial communities from an aquifer near a municipal landfill in Southern Ontario, Canada - Pumphouse #3_1 metaG DOE Joint Genome Institute (JGI) 3300014203 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes laura.hug@uwaterloo.ca Laura Hug No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 43.442 -80.577 2244423317 4628938 3460 4 5462 6 SRX3574177 Unrestricted 10.15 Metagenome 3300017825 *Microbiome Permanent Draft Archevir - Metagenome and diversity of hyperhalophilic archaeoviruses Saline water viral communities from hypersaline pond near village of Ngallou, Senegal - P7 GATC-Biotech AG, Konstanz, Germany 3300017825 Metagenome Analysis Idba_ud No Yes sroux@lbl.gov Simon Roux Yes 26472517 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified saline water 14.0491 -16.7624 3272754 6706 0 0 0 0 0.0 Metagenome 3300026860 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 70 (SPAdes) DOE Joint Genome Institute (JGI) 3300026860 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 38776090 93099 48 0 123 0 SRX4341348 Unrestricted 0.0 Metagenome 3300070264 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Colorado, USA - CPER_006-M-20190624-COMP-DNA1 3300070264 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 40064945 102385 53 2 108 3 0.0 Metagenome 3300035533 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B1.9_Sample1.Rodeo9.Well665 DOE Joint Genome Institute (JGI) 3300035533 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 105185132 183299 122 0 154 0 SRX8349917 Unrestricted 84.1 Metagenome 3300037064 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 S-2-D DOE Joint Genome Institute (JGI) 3300037064 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 739271758 1288418 280 16 368 19 SRX8160253 Unrestricted 12.2 Metagenome 3300043778 *Microbiome Permanent Draft Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA - PH 28 years plot 8 DOE Joint Genome Institute (JGI) 3300043778 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes luizdomeignoz@gmail.com Luiz Domeignoz Horta No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 42.303 -72.1228 1344247671 2275246 284 42 461 85 SRX15792982 Unrestricted 14.78 Metagenome 3300027051 *Microbiome Permanent Draft Enrichment culture microbial communities from Rutgers university that are MTBE-degrading Enrichment culture microbial communities from Arthur Kill intertidal strait, New Jersey, USA, that are MTBE-degrading - MTBE-AKM (Arthur Kill Methanogenic) MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027051 Metagenome Analysis spades v. 3.11.1 Yes Yes haggblom@rutgers.edu Max M. Haggblom No Environmental Aquatic Intertidal zone Marine Sediment Enrichment culture 40.58 -74.2 219142440 344998 144 0 199 0 SRX2782476 Unrestricted 0.0 Metagenome 3300043212 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_500m_C5_0cm2cm (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043212 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 37.0366 -121.2986 169945317 275578 87 0 139 1 SRX9141055 Unrestricted 94.65 Metagenome 3300037323 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Extra Lake-1 #413 DOE Joint Genome Institute (JGI) 3300037323 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4528 78.2718 383361788 740562 221 43 302 71 SRX9173516 Unrestricted 25.32 Metagenome 3300027763 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027763 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 48.2311 -71.2508 783446206 1573956 268 47 428 86 SRX2996493 Unrestricted 0.0 Metagenome 3300019124 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - early stage, 49.5 hrs after wetting v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300019124 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 252525263 423641 278 8 405 24 0.0 Metagenome 3300001933 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Moorea, Cooks Bay - GS048a J. Craig Venter Institute (JCVI) 3300001933 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine -17.475834 -149.81223 666592 1245 0 0 0 0 0.0 Metagenome 3300065501 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume viral communities from North Pacific Ocean - CTD-AT42-06-003-550m-0.03 v DOE Joint Genome Institute (JGI) 3300065501 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 8.39977 -104.9807 234838645 621032 114 6 221 15 Restricted 31.69 Metagenome 3300037402 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_C2 DOE Joint Genome Institute (JGI) 3300037402 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 511946781 1101005 264 56 412 90 SRX9087654 Unrestricted 7.29 Metagenome 3300044758 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_114 DOE Joint Genome Institute (JGI) 3300044758 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 300135078 835821 417 13 800 21 Unrestricted 6.78 Metagenome 3300014923 *Microbiome Permanent Draft Synthetic microbial community for library methods comparison from University of Liverpool, United Kingdom Synthetic microbial communities for library methods comparison from University of Liverpool, United Kingdom - Mg10 University of Liverpool 3300014923 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 53.405936 -2.9677609 34826419 77336 34 0 66 0 ERX1325892 0.0 Metagenome 3300029664 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37400 Beijing Genomics Institute (BGI) 3300029664 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 116218522 147036 85 0 137 0 0.0 Metagenome 3300023069 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S049-202B-5 DOE Joint Genome Institute (JGI) 3300023069 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 230641745 607703 457 17 821 31 SRX4799398 Unrestricted 7.62 Metagenome 3300041865 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_387 MetaG AgResearch, New Zealand, Mosgeil 3300041865 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1927400727 3799871 405 24 1301 53 0.0 Metagenome 3300000394 *Microbiome Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Heterotroph microbial communities from Hot Lake, Washington, USA - coculture lab enrichment 1 DOE Joint Genome Institute (JGI) 3300000394 Metagenome Analysis released based on JGI ITS Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline mat enrichment 46.349179 -119.281483 54905536 73757 39 0 60 0 Unrestricted 0.0 Metagenome 3300000972 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY73 J. Craig Venter Institute (JCVI) 3300000972 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 726310724 2356350 77 59 221 97 0.0 Metagenome 3300021958 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D DOE Joint Genome Institute (JGI) 3300021958 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Unclassified Marine Unclassified Estuarine water 37.6183 -122.2916 1207906080 2500759 574 134 803 241 SRX4053109 Unrestricted 19.85 Metagenome 3300013267 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100262 University of Pennsylvania 3300013267 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 25106427 52964 17 0 25 0 SRX756639 0.0 Metagenome 3300047506 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2014 MH-S_30cm DOE Joint Genome Institute (JGI) 3300047506 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.2128 19.023 112926113 205759 97 1 241 2 Restricted 43.21 Metagenome 3300039022 *Microbiome Finished Marine sponge bacterial communities from Western Mediterranean Sea, Spain Marine sponge bacterial communities from Western Mediterranean Sea, Spain - CV Beijing Novogene Bioinformatics Technology Co., Ltd 3300039022 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy No Yes leigarate@gmail.com Leire Garate No Host-associated Porifera Unclassified Sponge Unclassified Marine 42.114 3.1673 546389194 1083197 124 63 274 123 0.0 Metagenome 3300029040 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 39_12M Beijing Genomics Institute (BGI) 3300029040 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 116822182 146128 85 0 155 0 ERX491131 0.0 Metagenome 3300012913 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2 DOE Joint Genome Institute (JGI) 3300012913 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 773129615 2003978 827 56 1525 100 SRX3297565 Unrestricted 4.02 Metagenome 3300027622 *Microbiome Permanent Draft Marine microbial communities from oxygen minimum zone in the mesopelagic equatorial Pacific Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_550m (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027622 Metagenome Analysis spades v. 3.11.1 Yes Yes cdupont@jcvi.org Chris L. Dupont No Environmental Aquatic Oceanic Marine Unclassified Marine 8.0 -156.0 368048520 818685 313 20 514 22 SRX1991076 Unrestricted 0.0 Metagenome 3300041818 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - TR_31_wk_4 DOE Joint Genome Institute (JGI) 3300041818 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9664 -107.059 107882666 336072 245 6 466 28 SRX14809582 Unrestricted 7.13 Metagenome 3300029960 *Microbiome Permanent Draft Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil - Edson_C4 Reanalysis Center for Advanced Technologies in Genomics, Sao Paulo University 3300029960 Metagenome Analysis metaSPAdes v. 3.12.0 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 54461108 105227 128 2 156 2 0.0 Metagenome 3300057002 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Activated sludge microbial communities from bioreactor in WWTP, Madison, WI, USA - RS_2020-02-26_SampleA DOE Joint Genome Institute (JGI) 3300057002 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.03331 -89.35633 1447336719 2172188 767 101 1185 151 Unrestricted 0.0 Metagenome 2140918024 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all DOE Joint Genome Institute (JGI) 2140918024 Metagenome Analysis Velvet released by No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 181216642 273214 75 5 128 0 0.0 Metagenome 3300026258 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026258 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 468586031 1082874 342 45 595 63 SRX2782314 Unrestricted 0.0 Metagenome 3300044565 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TST2 DOE Joint Genome Institute (JGI) 3300044565 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.414 97232121 131874 113 9 105 9 SRX12687755 Unrestricted 113.6 Metagenome 3300047445 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere DOE Joint Genome Institute (JGI) 3300047445 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5881 -123.1939 477736156 812521 248 33 424 41 Unrestricted 17.53 Metagenome 3300008472 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159551223 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008472 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 158364712 219534 132 1 197 1 0.0 Metagenome 3300032797 *Microbiome Permanent Draft Lake microbial communities from Canada Sediment microbial communities from the Atlantic Highlands Ecozone, Canada - bottom sediment 17-054 Genome Quebec 3300032797 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Sediment 47.694086 -67.642841 770857708 1682028 537 3 978 4 0.0 Metagenome 3300044518 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Para, Brazil - F22 DOE Joint Genome Institute (JGI) 3300044518 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -2.8552 -54.9579 891545436 2252053 417 13 754 25 Unrestricted 8.62 Metagenome 3300005238 *Microbiome Permanent Draft Microbial communities on the surface of biochar Aged kaolinite enhanced biochar microbial communities from soil in Sydney, Australia - agriculture Australian Centre for Ecogenomics 3300005238 Metagenome Analysis IDBA_UD released per submitter No Yes j.ye@student.unsw.edu.au, j.ye@uq.edu.au JUN YE Yes 28169988 Environmental Terrestrial Biochar Soil Agricultural land soil -33.91794 151.235369 126678266 230110 369 24 571 40 0.0 Metagenome 3300043379 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 180-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043379 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9348 -107.0116 799004818 1911526 441 23 770 30 Unrestricted 6.87 Metagenome 3300013814 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -PAB002 Weill Cornell Medical College 3300013814 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -74.01 12201776 17987 8 3 10 2 SRX823430 0.0 Metagenome 3300013289 *Microbiome Permanent Draft Activated sludge bacterial and viral communities from EBPR bioreactors in Australia Activated sludge bacterial and viral communities from EBPR bioreactors in Queensland, Australia - SBR4-V91210 California Institute of Technology 3300013289 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Activated sludge -27.49999 153.01209 27740462 69740 23 3 43 4 SRX1077120 0.0 Metagenome 3300006014 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T3_25-Nov-14 DOE Joint Genome Institute (JGI) 3300006014 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 121974121 406034 243 52 499 121 SRX2838892 Unrestricted 0.0 Metagenome 3300027176 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027176 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 140046384 377330 254 129 542 187 SRX2021677, SRX1985468, SRX1985469 Unrestricted 0.0 Metagenome 3300001161 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M2 DOE Joint Genome Institute (JGI) 3300001161 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 12321105 34652 285 122 446 229 SRX3311675, SRX3311676 Unrestricted 0.0 Metagenome 3300001847 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM41. ROCA_DNA251_0.2um_TAP-D_2a 3300001847 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Lotic Freshwater Unclassified Marine plankton -2.484383 -55.0075 136227291 300265 43 12 118 11 0.0 Metagenome 3300000392 *Microbiome Permanent Draft Porifera Rhopaloeides odorabile microbial communities from Palm Island, Great Barrier Reef Rhopaloeides odorabile microbial communities from Palm Island, Great Barrier Reef, Australia - replicate 3 J. Craig Venter Institute 3300000392 Metagenome Analysis No Yes t.thomas@unsw.edu.au Torsten Thomas Yes 22699508 Host-associated Porifera Unclassified Sponge Unclassified Porifera Rhopaloeides odorabile -18.68 146.58 20555004 48166 29 1 63 5 0.0 Metagenome 3300000974 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP1092 DOE Joint Genome Institute (JGI) 3300000974 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -29.81 82.62 25480041 70014 57 3 127 2 SRX1982591 Unrestricted 0.0 Metagenome 3300019865 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - L1s1 DOE Joint Genome Institute (JGI) 3300019865 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.8926 -106.9111 60075723 156800 142 19 364 28 SRX3958799, SRX3958800 Unrestricted 0.0 Metagenome 3300039024 *Microbiome Permanent Draft Cryoconite microbiome from cyroconite holes in Resolute Bay, NU, Canada Cryoconite microbial community from Resolute Bay, Canada - ClaremontCryo ClaremontCryo_2 McGill University 3300039024 Metagenome Analysis canu v. 1.8 released by JGI data releasing policy No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Aquatic Sea ice Marine Cryoconite Cryoconite 74.44707 -95.0348 6 12482383 16570 23 2 37 2 0.0 Metagenome 3300044966 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME06Nov2001-rr0968 DOE Joint Genome Institute (JGI) 3300044966 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 317194517 491986 148 8 195 10 Unrestricted 14.07 Metagenome 3300020350 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000676 (ERX556036-ERR599084) CEA Genoscope 3300020350 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -9.067 -140.6346 362096588 911551 269 2 572 17 0.0 Metagenome 3300057180 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - LE-17 DOE Joint Genome Institute (JGI) 3300057180 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.827 -83.193 220527164 466273 201 111 341 173 Unrestricted 18.63 Metagenome 3300007007 *Microbiome Permanent Draft Mining for adhesins from protozoa-associated epibionts Protozoa-associated epibionts from sheep rumen, Palmerston North, New Zealand - no screen Leibniz Institute 3300007007 Metagenome Analysis Unknown released per JGI data release policy No Yes filomena.ng@agresearch.co.nz Filomena Ng No Host-associated Mammals Stomach Digestive system Rumen Rumen -40.355 175.6117 860946 3090 3 1 4 4 0.0 Metagenome 3300029723 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36020 Beijing Genomics Institute (BGI) 3300029723 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 115896282 135597 91 0 142 0 0.0 Metagenome 3300039363 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 201_12M Beijing Genomics Institute (BGI) 3300039363 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 55398096 57935 32 0 64 0 ERX490995 0.0 Metagenome 3300021085 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015 DOE Joint Genome Institute (JGI) 3300021085 Metagenome Analysis spades v. 3.10.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.7468 -122.0193 846164020 1604992 403 154 545 268 SRX4010466 Unrestricted 32.12 Metagenome 3300019818 *Microbiome Permanent Draft Microbial mat bacterial communities from Rhone River delta, Camargue, France Microbial mat bacterial communities from Rhone River delta, Camargue, France - 1 University of Barcelona 3300019818 Metagenome Analysis velvet released by Mercedes Berlanga No Yes mberlanga@ub.edu Mercedes Berlanga No Environmental Aquatic Unclassified Sediment Unclassified Microbial mat 43.68 4.6 63178372 172946 86 5 135 15 0.0 Metagenome 3300043033 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B6.6_Sample6.Rodeo6.Well1132 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043033 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 108804730 206142 166 0 246 0 SRX8356258 Unrestricted 127.54 Metagenome 3300041503 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_8 MetaG AgResearch, New Zealand, Mosgeil 3300041503 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Unclassified Roots Unclassified White clover root -43.648506 172.343549 610474442 1164241 145 17 517 55 0.0 Metagenome 3300027624 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus leukodermatus Group 2 BELIZE.2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027624 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 566660245 777213 11 1 12 4 SRX2712312 Unrestricted 0.0 Metagenome 3300056685 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.3W.11 SIP fraction DOE Joint Genome Institute (JGI) 3300056685 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 173596010 289856 150 11 253 25 Unrestricted 20.52 Metagenome 3300038701 *Microbiome Permanent Draft Marine microalgae viral communities from raceway pond in Palavas-les-Flots, France Marine microalgae viral communities from raceway pond in Palavas-les-Flots, France - DNA-ultraVirome DOE Joint Genome Institute (JGI) 3300038701 Metagenome Analysis metaspades v. 3.13.0 Yes Yes guillaume.blanc@mio.osupytheas.fr Guillaume Blanc No Host-associated Algae Unclassified Microalgae Unclassified marine microalgae 43.5198 3.9073 123791650 275077 8 1 12 0 SRX9170057 Unrestricted 881.84 Metagenome 3300046523 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere DOE Joint Genome Institute (JGI) 3300046523 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5879 -123.1928 483113456 823040 269 44 425 77 Unrestricted 19.33 Metagenome 3300008474 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 158944319 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008474 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 55789152 93372 42 0 63 0 0.0 Metagenome 3300021173 *Microbiome Permanent Draft Wetland sediment microbial communities from Dorn Creek Dane County, Wisconsin, USA, enriched under anaerobic Fe-reducing conditions Wetland sediment microbial communities from Wisconsin, USA, enriched under anaerobic conditions and in the presence of Ferrihydrite and Glucose - 10AB University of Wisconsin, Madison 3300021173 Metagenome Analysis SPAdes 3.10.0 released by JGI data releasing policy Yes Yes jmejia@wisc.edu Jacqueline Mejia No Environmental Aquatic Wetlands Freshwater Sediment Wetland Sediment 43.144933 -89.471218 852829376 2046146 370 9 684 12 0.0 Metagenome 3300057004 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E2P_20_22 DOE Joint Genome Institute (JGI) 3300057004 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9927826 -81.4891309 1658945256 2462331 591 1 895 0 Unrestricted 14.67 Metagenome 3300006012 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_AAIW_ad_750m_LV_A DOE Joint Genome Institute (JGI) 3300006012 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 589261953 1710610 648 36 1185 69 SRX2776067 Unrestricted 0.0 Metagenome 3300059695 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Lab enriched hot spring sediment microbial communities from Yellowstone National Park, WY, United States - Kor-8B-YNP-CB-003 DOE Joint Genome Institute (JGI) 3300059695 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes viola.krukenberg@montana.edu; anthony.kohtz@student.montana.edu Viola Krukenberg; Anthony Kohtz No Environmental Aquatic Sediment Thermal springs Unclassified Hot spring sediment 44.576777 -110.789339 18609107 21005 6 0 6 0 Unrestricted 781.18 Metagenome 3300002238 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 DOE Joint Genome Institute (JGI) 3300002238 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,, Yes Yes brune@mpi-marburg.mpg.de Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 26.0625 -80.2332 1425473702 3767192 68 103 166 111 SRX3315525, SRX3315524 Unrestricted 0.0 Metagenome 3300044803 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - TR_35_wk_3 DOE Joint Genome Institute (JGI) 3300044803 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Unclassified Soil Grasslands soil 38.9957 -107.075 323615558 874568 299 13 535 24 Unrestricted 7.39 Metagenome 3300069543 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONZ_001-M-20170710-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069543 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.10077 -96.56309 39978509 119732 111 17 199 34 0.0 Metagenome 3300013812 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00886 Weill Cornell Medical College 3300013812 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.73 -73.86 11905436 15109 5 0 13 0 SRX822850 0.0 Metagenome 3300011772 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01015 Weill Cornell Medical College 3300011772 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.75 -73.97 39733225 57262 27 0 36 0 SRX822977 0.0 Metagenome 3300013128 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 69cm DOE Joint Genome Institute (JGI) 3300013128 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.05 29.2062 1563066538 3263305 1483 9 2414 21 SRX3571227 Unrestricted 15.29 Metagenome 3300049774 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A25_A_5_drought DOE Joint Genome Institute (JGI) 3300049774 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 87213575 223088 243 18 480 28 Unrestricted 10.79 Metagenome 3300003796 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul09 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003796 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 65961790 158342 93 10 158 7 SRX2565522 Unrestricted 0.0 Metagenome 3300011218 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00201 Weill Cornell Medical College 3300011218 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.6 -73.99 32636975 57543 24 3 33 5 SRX822180 0.0 Metagenome 3300059424 *Microbiome Permanent Draft Sorghum rhizosphere and bulk soil microbial communities from University of Arizona Maricopa Agricultural Center, AZ, USA Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 DOE Joint Genome Institute (JGI) 3300059424 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes laurameredith@email.arizona.edu Laura Meredith No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 33.07735 -111.974819 412374635 1015715 529 19 1058 28 Unrestricted 7.55 Metagenome 3300011265 *Microbiome Permanent Draft Acid mine drainage microbial communities from Malanjkhand copper mine, India Acid mine drainage microbial communities from Malanjkhand copper mine, India - M8 K-mer 55 Xcelris labs Ltd 3300011265 Metagenome Analysis Metavelvet released by JGI data releasing policy No Yes psar@hijli.iitkgp.ernet.in Pinaki Sar No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage sediment 21.9985 80.697983 276238558 671088 359 62 577 105 0.0 Metagenome 3300005470 *Microbiome Draft Saline water and sediment microbial community from Etoliko Lagoon, Greece Saline benthic water microbial community from Etoliko Lagoon, Greece v2 (version 2) DOE Joint Genome Institute (JGI) 3300005470 Metagenome Analysis SPADES v3.5.0 released based on JGI ITS Yes Yes nnivanova@lbl.gov, nckyrpides@lbl.gov Natasha Ivanova, Nikos Kyrpides No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline water and sediment 38.468307 21.333032 79630308 130383 89 1 131 0 Unrestricted 0.0 Metagenome 3300045528 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Atchafalaya River, Louisiana, USA - NASQAN2011_209 DOE Joint Genome Institute (JGI) 3300045528 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 29.6979 -91.3728 261950132 734770 411 99 705 149 Unrestricted 0.0 Metagenome 3300047673 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere DOE Joint Genome Institute (JGI) 3300047673 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1208 -123.2713 791151323 1295840 281 97 460 116 Unrestricted 14.21 Metagenome 3300002325 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP21-I4 3300002325 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300043141 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8CP15 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043141 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 168185537 382704 190 3 304 5 SRX8379539 Unrestricted 24.19 Metagenome 3300043214 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_4500m_C5_0cm5cm (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043214 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 35.689 -123.0778 147415045 248605 96 2 176 2 SRX9141343 Unrestricted 87.85 Metagenome 3300003845 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - At.P.e DOE Joint Genome Institute (JGI) 3300003845 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes avisel@lbl.gov, laila.partida@cinvestav.mx Axel Visel, Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 20.6863 -101.8747 48612529 79782 38 67 42 143 SRX2124720 Unrestricted 0.0 Metagenome 3300001698 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A3-11 DOE Joint Genome Institute (JGI) 3300001698 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 223322 801 26 0 40 1 SRX1990516 Unrestricted 0.0 Metagenome 3300014760 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS51_6 University of Hohenheim 3300014760 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 96319452 142113 60 0 105 0 0.0 Metagenome 3300000670 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 78 DOE Joint Genome Institute (JGI) 3300000670 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 4595509 14495 18 0 40 0 SRX4341378 Unrestricted 0.0 Metagenome 3300070262 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lyndon B. Johnson National Grassland, Texas, USA - CLBJ_006-M-20190416-COMP-DNA1 3300070262 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 51592 181 3 0 2 0 0.0 Metagenome 3300027200 *Microbiome Permanent Draft Rhizosphere and bulk soil microbial communities from Harvard Forest, USA Rhizosphere microbial communities from Harvard Forest, USA - 4Rhizosphere_NRpos metaG (SPAdes) DOE Joint Genome Institute (JGI) 3300027200 Metagenome Analysis spades v. 3.11.1 Yes Yes deangelis@microbio.umass.edu Kristen M. DeAngelis PhD No Host-associated Plants Rhizosphere Roots Soil rhizosphere 42.5502 -72.1737 2788314 8189 10 3 14 3 SRX2718162 Unrestricted 0.0 Metagenome 7000000209 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 158984779 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000209 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 4414618 8467 0 0 0 0 SRX023598, SRX023597 0.0 Metagenome 3300037062 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 E3 30-34 DOE Joint Genome Institute (JGI) 3300037062 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0468 455032726 858431 289 3 475 3 SRX8142648 Unrestricted 9.1 Metagenome 3300009427 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS848 no min length Marine Biological Laboratory 3300009427 Metagenome Analysis Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow hydrothermal vent diffuse flow 18.376929 -81.797906 6.65 400380383 1847081 213 31 630 67 0.0 Metagenome 3300027495 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius clavatus LIZARD ISLAND.1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027495 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 534946771 582318 6 2 5 22 SRX2712176 Unrestricted 0.0 Metagenome 3300027920 *Microbiome Permanent Draft Wastewater bacterial communities from water purifying plant in Alicante, Spain Wastewater bacterial communities from water purifying plant in Alicante, Spain - Replicate Ab1 Polytechnic University of Valencia 3300027920 Metagenome Analysis metaSPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 38.43 -0.42 79369032 149909 59 1 75 1 0.0 Metagenome 3300037404 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_C1 DOE Joint Genome Institute (JGI) 3300037404 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 486334903 1022493 229 42 349 81 SRX9146691 Unrestricted 6.9 Metagenome 3300007771 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS917_Marker33_DNA CLC_assembly Marine Biological Laboratory 3300007771 Metagenome Analysis CLC genomics workbench, v. 7.0 released by Caroline Fortunato No Yes jhuber@mbl.edu, jhuber@whoi.edu; randerson@carleton.edu; cfortunato@gmail.com; elks@mit.edu Huber, Julie Huber; Rika Anderson; Caroline Fortunato; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse vent fluid, hydrothermal vents 45.93316 -129.9822 336912167 625924 180 10 342 14 0.0 Metagenome 3300016657 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water catchment in Singapore - WC_Site 4c, Aug Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016657 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 1.35 103.87 67168240 84772 18 7 19 7 0.0 Metagenome 3300038598 *Microbiome Permanent Draft Freshwater microbial communities from various watersheds in Southwestern British Columbia, Canada Freshwater microbial communities from Southwestern British Columbia, Canada - PDS_051 University of British Columbia 3300038598 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 49.0 -123.0 19567081 41629 40 0 54 0 0.0 Metagenome 3300007936 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 160603188 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007936 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 10471833 18549 13 0 21 0 SRX022963, SRX022962 0.0 Metagenome 3300070775 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_005-O-20170712-COMP-DNA1 3300070775 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 609973 2115 6 0 15 0 0.0 Metagenome 3300022458 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1BM3 JM93 AGRF 3300022458 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 61806595 99766 44 1 71 1 0.0 Metagenome 3300000888 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Anaerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and E1 DOE Joint Genome Institute (JGI) 3300000888 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Anaerobic enrichment media 17.967317 -67.018833 39061453 39175 4 0 6 0 SRX3311622 Unrestricted 0.0 Metagenome 3300007123 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764325968 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007123 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 122383058 169187 81 0 90 0 0.0 Metagenome 2067725002 *Microbiome Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil v1 DOE Joint Genome Institute (JGI) 2067725002 Metagenome Analysis Artifact filter, partition at k=32, assemble with Velvet at k19-45, Minimus2 released based on JGI ITS No Yes janet.jansson@pnnl.gov Janet Jansson Yes 30158906 Environmental Terrestrial Unclassified Soil Grasslands Soil 39.0042816 -77.1012173 157509997 435219 64 0 131 0 Unrestricted 0.0 Metagenome 3300050285 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_44 DOE Joint Genome Institute (JGI) 3300050285 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -75.482 159.591 286616446 424084 66 14 93 21 SRX18236980 Restricted 58.35 Metagenome 7000000663 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765074482 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000663 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 98937371 183912 0 0 0 0 0.0 Metagenome 3300026077 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026077 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 246802056 584230 188 9 360 10 SRX2775955 Unrestricted 0.0 Metagenome 3300052802 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_CL_041D DOE Joint Genome Institute (JGI) 3300052802 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0704 10.43436 409205763 1091406 386 31 743 27 Unrestricted 8.82 Metagenome 3300029588 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35578 Beijing Genomics Institute (BGI) 3300029588 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 228116596 305737 190 1 268 1 0.0 Metagenome 3300042543 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Sep2010-rd0185 DOE Joint Genome Institute (JGI) 3300042543 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 998479574 1427604 408 100 562 145 Unrestricted 19.32 Metagenome 3300020059 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - L1a2 DOE Joint Genome Institute (JGI) 3300020059 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.8927 -106.9112 245483692 553088 238 20 446 29 SRX3958726, SRX3958725 Unrestricted 0.0 Metagenome 3300034691 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_04D_16 DOE Joint Genome Institute (JGI) 3300034691 Metagenome Analysis metaspades v. 3.13.0 Yes Yes swr38@rutgers.edu; barkay@aesop.rutgers.edu Spencer W. Roth; Tamar Barkay No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9141 -147.834 500634292 1176320 451 14 696 24 SRX7633788 Unrestricted 7.78 Metagenome 3300011413 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT231_2 DOE Joint Genome Institute (JGI) 3300011413 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9225 -106.9515 270124585 599004 306 25 608 54 SRX3368780 Unrestricted 0.0 Metagenome 3300022737 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S094-311B-5 DOE Joint Genome Institute (JGI) 3300022737 Metagenome Analysis spades v. 3.11.1-check Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 148933653 416005 425 15 727 41 SRX4799395 Unrestricted 7.82 Metagenome 3300044921 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_6_B DOE Joint Genome Institute (JGI) 3300044921 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 166050040 204122 94 1 115 2 Unrestricted 90.04 Metagenome 3300056752 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - APS1_2W_T0 DOE Joint Genome Institute (JGI) 3300056752 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 2181247324 2923858 721 113 890 185 Unrestricted 26.73 Metagenome 3300029056 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 397_M Beijing Genomics Institute (BGI) 3300029056 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 179999657 240799 158 0 249 0 ERX491136 0.0 Metagenome 3300033131 *Microbiome Permanent Draft Mercury Periphyton Project Periphyton microbial communities from the St. Maurice River, Quebec, Canada - S3.A.t0 Genome Quebec 3300033131 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Periphyton Freshwater periphyton 47.899882 -73.808857 279842668 680560 389 111 736 206 0.0 Metagenome 3300038574 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark - 1609-PRJ1066-RD-Sewage-104_S8 Technical University of Denmark 3300038574 Metagenome Analysis Yes Yes No Engineered Wastewater Unclassified Sewage Unclassified Sewage 55.640494 12.5058209 12908943 27825 67 1 107 4 ERX1596344 0.0 Metagenome 3300037348 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Unnamed Lake-18 #990 DOE Joint Genome Institute (JGI) 3300037348 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.582 78.17 435084073 771420 201 83 287 100 SRX9378922 Unrestricted 19.35 Metagenome 3300008891 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T5 (3) BES Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO Shell Corporation 3300008891 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl .ac.uk, ianhead@ncl .ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 94058007 336412 163 0 268 1 0.0 Metagenome 3300014068 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00387 Weill Cornell Medical College 3300014068 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway 40.68 -73.97 24239962 38328 16 0 27 1 SRX822358 0.0 Metagenome 3300071095 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from North Sterling, Colorado, USA - STER_029-M-20160817-COMP-DNA1 3300071095 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Agricultural land Soil 741875 2827 7 0 14 1 0.0 Metagenome 3300014015 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00932 Weill Cornell Medical College 3300014015 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.93 20159124 34917 15 0 20 0 SRX822895 0.0 Metagenome 3300014948 *Microbiome Permanent Draft Human fecal microbial commmunities from Fecal Microbiota Transplantation (FMT) for ulcerative colitis - University of Washington Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P271T2 University of Washington 3300014948 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26288277 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 92504574 160344 98 2 141 0 SRX1131744 0.0 Metagenome 3300046788 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 soil DOE Joint Genome Institute (JGI) 3300046788 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121253 -123.270368 4.96 1465906602 2316393 384 18 629 32 Unrestricted 12.37 Metagenome 3300005807 *Microbiome Permanent Draft Basalt sediment microbial communities from Loihi, Hawaii, USA Basalt sediment microbial communities from Loihi, Hawaii, USA - Two Loihi Rocks 3300005807 Metagenome Analysis Mira released by JGI data releasing policy No Yes esinger@lbl.gov Esther Singer No Environmental Aquatic Oceanic Marine Benthic Basalt sediment 18.92 -155.27 8 11731177 23989 16 0 33 0 0.0 Metagenome 3300001674 *Microbiome Permanent Draft Wastewater treatment plant microbial communities from Luxembourg B2nonrrna 3300001674 Metagenome Analysis idba-tran released by JGI data releasing policy No Yes magdalena.calusinska@list.lu Magdalena Calusinska No Engineered WWTP Unclassified Wastewater Unclassified Wastewater treatment plant 49.726047 5.920576 8.05 10431318 37908 117 30 516 89 0.0 Metagenome 3300035125 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D1103U20 DOE Joint Genome Institute (JGI) 3300035125 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0387 775130257 1715807 783 4 1354 4 SRX8255822 Unrestricted 6.89 Metagenome 3300033806 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_20 DOE Joint Genome Institute (JGI) 3300033806 Metagenome Analysis spades v. 3.13.0 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Unclassified peatland -6.3272 -74.8136 484619397 1223739 495 3 882 4 SRX7525196 Unrestricted 7.46 Metagenome 3300042911 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-340 Genome Quebec 3300042911 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.289097 -119.582084 847853035 1746218 474 112 801 180 0.0 Metagenome 3300046016 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Para, Brazil - P15 DOE Joint Genome Institute (JGI) 3300046016 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Pasture Soil Agricultural land Soil -3.2948 -54.852 625242022 1452315 243 4 468 8 Restricted 0.0 Metagenome 3300049501 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC33 DOE Joint Genome Institute (JGI) 3300049501 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 32660916 81670 117 0 228 2 Unrestricted 26.22 Metagenome 3300045783 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - S2-R2-A DOE Joint Genome Institute (JGI) 3300045783 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3571 19.051 242197432 588523 170 17 313 27 Unrestricted 6.91 Metagenome 3300011979 *Microbiome Permanent Draft Ruminant gut microbial communities from various locations in USA Sheep rumen microbial communities from Wyoming, USA - O_aries_Con_1396 University of Missouri 3300011979 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen 41.314168 -105.584589 189845674 295013 109 0 202 0 SRX331752 0.0 Metagenome 3300025593 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWA_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025593 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.015041 -122.501831 338493223 629907 243 3 396 8 SRX7142284 Unrestricted 0.0 Metagenome 3300012025 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #81 DOE Joint Genome Institute (JGI) 3300012025 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 73641348 133433 60 1 113 1 SRX3241666 Unrestricted 0.0 Metagenome 3300022851 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1237 DOE Joint Genome Institute (JGI) 3300022851 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 119299278 250667 55 0 76 0 SRX4397421 Unrestricted 24.51 Metagenome 3300001970 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Hypersaline microbial communities from Punta Cormorant, Floreana Island, Equador - GS033 J. Craig Venter Institute (JCVI) 3300001970 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline -1.2283334 -90.42917 210753851 328077 209 7 254 9 0.0 Metagenome 3300000481 *Microbiome Permanent Draft Lentic microbial communities from Lake Alinen Mustajarvi Hypolimnium Lake Alinen Mustajarvi Hypolimnium Sample 1 Broad Institute 3300000481 Metagenome Analysis Newbler released per JGI data release policy No Yes lucas.sinclair@ebc.uu.se Lucas Sinclair No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Lentic 61.563889 22.044167 6074715 14608 1 0 5 0 0.0 Metagenome 3300021354 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m DOE Joint Genome Institute (JGI) 3300021354 Metagenome Analysis spades v. 3.11.1-check Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.701 -93.727 825770572 1760217 696 24 1159 43 SRX3984560 Unrestricted 19.92 Metagenome 3300046367 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_32 DOE Joint Genome Institute (JGI) 3300046367 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9236 -106.9499 473438027 1342217 1496 43 2964 77 Restricted 0.0 Metagenome 3300040575 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_016-M-35-17-20140327-GEN-DNA1 Argonne National Laboratory 3300040575 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 2162515 6686 15 3 23 3 ERX2133954 0.0 Metagenome 3300000998 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN603 DOE Joint Genome Institute (JGI) 3300000998 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 59849 188 12 0 34 2 SRX3311851 Unrestricted 0.0 Metagenome 3300002433 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP16-MB 3300002433 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300006345 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0075m University of Hawaii 3300006345 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes ktennessen@lbl.gov Kristin Tennessen No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 490023756 1113547 445 67 683 116 0.0 Metagenome 3300026701 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN407 (SPAdes) DOE Joint Genome Institute (JGI) 3300026701 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Soil 44.20517707 -122.1284473 15233200 49683 58 3 106 5 SRX1986909 Unrestricted 0.0 Metagenome 3300032217 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada - Lake 06-132 Genome Quebec 3300032217 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.966328 -74.301609 587733585 1292704 223 108 367 198 0.0 Metagenome 3300024288 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal DOE Joint Genome Institute (JGI) 3300024288 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 1210805177 2971866 606 48 1133 98 SRX4365322, SRX4365321, SRX4365320 Unrestricted 1.2 Metagenome 3300005681 *Microbiome Permanent Draft Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia Enhanced biological phosphorus removal bioreactor viral communities from the University of Queensland, Australia - SBR4-V91506 Phage Sequencing University of Queensland 3300005681 Metagenome Analysis CLC 6.0 Released per Connor Skennerton (Sep 15, 2015) No Yes c.skennerton@gmail.com Connor Skennerton No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor lab-scale EBPR bioreactor -27.49999 153.012098 5219350 7750 0 0 0 0 0.0 Metagenome 3300034036 *Microbiome Permanent Draft Deception Metagenome Glacier sediment microbial communities near Fumarole Bay, Deception Island, Antarctica - FBC3 The Brazilian National Council for Scientific and Technological Development (CNPq) 3300034036 Metagenome Analysis IDBA-ud v. 1.1.1 released per Amanda Bendia -- GOLD-1013 No Yes amandagbendia@gmail.com Amanda Bendia No Environmental Aquatic Ice Freshwater Glacier glacier sediment -62.96 -60.71 46762764 69328 13 4 34 5 0.0 Metagenome 3300046389 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_190417.NP1 DOE Joint Genome Institute (JGI) 3300046389 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 727746627 1519184 332 33 572 55 Unrestricted 18.83 Metagenome 7000000722 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human subgingival plaque microbial communities from NIH, USA - visit 1, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000722 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human 39465851 79780 0 0 0 0 0.0 Metagenome 3300025119 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025119 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 398385407 908780 629 31 1233 49 SRX1990984 Unrestricted 0.0 Metagenome 3300008498 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160178356 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008498 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 52048914 101275 44 0 62 0 0.0 Metagenome 3300040396 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_005-M-20160720-COMP-DNA1 Battelle Memorial Institute 3300040396 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 5440898 15490 26 1 43 0 0.0 Metagenome 3300008981 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Final time point T65 (3) (BES) benzoate enrichments of Methanogenic microbial communities using Athabasca oil sands as inoculum DE NOVO (2) Shell Corporation 3300008981 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 42757439 129741 74 2 676 7 0.0 Metagenome 3300007504 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate a Georgia Genomics Facility 3300007504 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified water column 10.5 -64.66 493614810 640782 275 1 342 1 0.0 Metagenome 3300029171 *Microbiome Permanent Draft Aquariaum water viral communities from Chicago, USA Aquariaum water viral communities from Chicago, USA - Great Lakes - GLA2 Michigan State University 3300029171 Metagenome Analysis released Yes Yes No Environmental Aquatic Unclassified Aquaculture Unclassified Aquarium water 41.87 -87.61 27431803 63875 39 3 133 1 0.0 Metagenome 3300035488 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_1_10_6 mgh University of Alberta 3300035488 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 67021452 86987 27 0 33 0 0.0 Metagenome 3300007856 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 160704339 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007856 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 3521615 5830 4 0 8 0 0.0 Metagenome 3300059705 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.709 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059705 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 138321136 331615 147 25 223 44 SRX2753567 Unrestricted 0.0 Metagenome 7000000434 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 763536994 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000434 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 111739708 165616 0 0 0 0 0.0 Metagenome 3300001309 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypoxic/sulfidic aquatic microbial communities from Monarch Geyser, Yellowstone National Park, USA - MG v1 DOE Joint Genome Institute (JGI) 3300001309 Metagenome Analysis Yes Yes binskeep@montana.edu, jim.fredrickson@pnnl.gov; binskeep@montana.edu William Inskeep, Jim Fredrickson; William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hypoxic/sulfidic aquatic 44.376 -110.69 76077788 182999 27 4 40 3 SRX2553563 Unrestricted 0.0 Metagenome 3300040421 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_003-M-20160720-COMP-DNA1 Battelle Memorial Institute 3300040421 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 4678097 13140 12 0 27 0 0.0 Metagenome 3300024306 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepB_8h DOE Joint Genome Institute (JGI) 3300024306 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 183398807 409005 208 27 319 45 SRX4547323 Unrestricted 12.33 Metagenome 3300001591 *Microbiome Permanent Draft Saline water concentrator pond microbial communities from Bras del Port saltern, Santa Pola, Spain Saline water concentrator pond microbial communities from Bras del Port saltern, Spain - SS19R GATC-Biotech AG, Konstanz, Germany 3300001591 Metagenome Analysis released per JGI data release policy No Yes abf@us.es Ana Fernandez No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Saline water concentrator pond 38.11 -0.36 159247843 795739 94719 2958 196382 36065 0.0 Metagenome 3300012049 *Microbiome Permanent Draft Norwegian Young Sea Ice 2015 - N-ICE15 Seawater microbial communities from Norwegian Young Sea Ice, Arctic Ocean, Norway, 2015 - N-ICE15, floe 4, site 3, 20m LGC Genomics 3300012049 Metagenome Analysis Ray v 2.3.1 released by JGI data releasing policy No Yes antonioggsousa@gmail.com; cmagalhaes@ciimar.up.pt Antonio Sousa; Catarina Magalh?es No Environmental Aquatic Epipelagic Marine Unclassified marine 80.500215 7.866786 620373 3235 7 2 16 1 0.0 Metagenome 3300023234 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #139 DOE Joint Genome Institute (JGI) 3300023234 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 132062988 254109 146 0 214 1 SRX4396696 Unrestricted 11.65 Metagenome 3300038691 *Microbiome Permanent Draft Lake microbial communities from Canada Sediment microbial communities from the Atlantic Highlands Ecozone, Canada - top sediment 17-067 metaSPAdes Genome Quebec 3300038691 Metagenome Analysis SPAdes v. 3.11.1 metaSPAdes mode released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Sediment 48.131057 -68.666779 826011156 2433575 473 28 961 46 0.0 Metagenome 3300069557 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - NIWO_041-O-20160828-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069557 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.05425 -105.58237 9575552 30901 59 6 98 16 0.0 Metagenome 3300037239 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 711 E-1-S DOE Joint Genome Institute (JGI) 3300037239 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 485151858 1191134 492 9 847 12 SRX8146440 Unrestricted 6.45 Metagenome 3300005723 *Microbiome Permanent Draft Termite gut microbial communities from Australia Mastotermes darwiniensis gut microbial communities from Townsville, Australia - TV02 University of Queensland 3300005723 Metagenome Analysis CLC released per JGI data release policy No Yes nurdyana.abdulrahman@uqconnect.edu.au, nurdyana.abdul.rahman@sgh.com.sg Abdul Rahman, Nurdyana Abdul Rahman No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Mastotermes gut -19.280075 146.824457 1203400971 2699744 172 12 397 21 0.0 Metagenome 3300033430 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - small nodules DOE Joint Genome Institute (JGI) 3300033430 Metagenome Analysis spades v. 3.12.0 Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Host-associated Plants Nodule Roots Unclassified root nodules 34.06 -118.44 467141578 443977 21 29 34 59 SRX6453234 Unrestricted 89.53 Metagenome 3300018068 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b2 DOE Joint Genome Institute (JGI) 3300018068 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 .9 571873963 1279811 703 20 1460 34 SRX3939724 Unrestricted 4.74 Metagenome 3300040112 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Atlantic Neotropical, PR, USA - GUAN_043-M-20161005-COMP-DNA1 Battelle Memorial Institute 3300040112 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 17.96955 -66.8687 12671937 37282 39 0 84 1 0.0 Metagenome 7000000550 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 158883629 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000550 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 129314517 223256 0 0 0 0 0.0 Metagenome 3300043635 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 337-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043635 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9526 -107.0667 208173721 658578 411 22 731 29 Unrestricted 6.78 Metagenome 3300027559 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027559 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 267455872 649653 248 79 439 144 SRX3312706 Unrestricted 0.0 Metagenome 3300069385 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Woodworth, Northern Plains, ND, USA - WOOD_001-M-20140925-COMP-DNA1 re-annotation Argonne National Laboratory 3300069385 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12823 -99.24136 5292440 17712 49 4 87 7 ERX2134063 0.0 Metagenome 3300012987 *Microbiome Permanent Draft Amended soil microbial communities from New York, USA to study carbon cycling Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG DOE Joint Genome Institute (JGI) 3300012987 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes twhitman@wisc.edu Thea Whitman No Environmental Terrestrial Unclassified Soil Agricultural land soil 42.4531 -76.3842 2644355643 5936069 2381 192 4028 311 SRX3568613 Unrestricted 5.58 Metagenome 3300027365 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027365 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 39.849 -81.036 179892240 331694 167 5 215 8 SRX2996510 Unrestricted 0.0 Metagenome 3300048921 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 DOE Joint Genome Institute (JGI) 3300048921 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Unclassified Roots Unclassified Root 42.40581 -85.40228 1052418756 1487280 317 38 426 67 Unrestricted 39.73 Metagenome 3300037725 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site1_salt_MII_0 DOE Joint Genome Institute (JGI) 3300037725 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Tidal flats microbial mat 20.7609 58.6478 231245711 454591 118 49 206 53 SRX9169793 Unrestricted 21.42 Metagenome 3300070993 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Marvin Klemme Range Research Station, Oklahoma, USA - OAES_045-M-20180530-COMP-DNA1 3300070993 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 25577289 71676 42 1 107 2 0.0 Metagenome 3300027318 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius imperfectus BELIZE.2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027318 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 444141718 471232 28 2 31 2 SRX3299583 Unrestricted 0.0 Metagenome 3300018015 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_150 DOE Joint Genome Institute (JGI) 3300018015 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 673548453 1191413 421 0 705 3 SRX3960103 Unrestricted 20.07 Metagenome 3300006329 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0500m University of Hawaii 3300006329 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Aphotic zone Marine 22.75 -158.0 361782574 831257 505 30 715 37 0.0 Metagenome 3300061764 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - PeachFuzz.103118 DOE Joint Genome Institute (JGI) 3300061764 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.5322 -110.7975 8-9 129334201 270852 84 0 125 1 Unrestricted 140.63 Metagenome 3300033554 *Microbiome Permanent Draft Extreme environments viral communities from various locations Glacier ice microbial communities from Ngari, Tibet, China - 37_GP2_109.2 DOE Joint Genome Institute (JGI) 3300033554 Metagenome Analysis spades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Ice Freshwater Glacier ice 35.2833 81.4833 365686799 785467 214 18 271 31 SRX7543078 Unrestricted 20.03 Metagenome 3300015356 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG DOE Joint Genome Institute (JGI) 3300015356 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 660378778 1603410 647 32 1200 55 SRX3047959 Unrestricted 0.0 Metagenome 3300010167 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Labiotermes labralis P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P3 DOE Joint Genome Institute (JGI) 3300010167 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 5.0626 -53.0462 5684246554 10156125 5429 71 8941 114 SRX2525401 Unrestricted 0.0 Metagenome 3300042054 *Microbiome Permanent Draft Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - B_a6.9 Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042054 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1237 -89.1404 873094536 877927 2 8 4 14 SRX5234792 0.0 Metagenome 3300029470 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001930-17 Beijing Genomics Institute (BGI) 3300029470 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 117679587 143429 99 0 124 0 0.0 Metagenome 3300020291 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000315 (ERX556069-ERR599031) CEA Genoscope 3300020291 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 20.8188 63.6158 178932524 408687 150 1 276 5 0.0 Metagenome 3300007977 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763901136 replicate 2 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007977 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 131624830 193628 93 0 114 0 0.0 Metagenome 2236876006 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Marine microbial communities from Columbia River, CM, sample from Cape Meares, GS311-0p8-Deep1200 University of South Carolina 2236876006 Metagenome Analysis No Yes mariyasmit@hotmail.com Mariya Smit, Mariya W. Smit No Environmental Aquatic Intertidal zone Marine Unclassified Marine estuarine 45.483 -124.918 103840627 296658 217 25 336 65 0.0 Metagenome 3300052667 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Photosynthetic mat microbial communities from Mushroom Spring, YNP, Wyoming, United States - MS20041105 H4B DOE Joint Genome Institute (JGI) 3300052667 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 21228997 31887 20 0 29 0 Unrestricted 0.0 Metagenome 3300039274 *Microbiome Permanent Draft Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada - high-flow bush MVw12 Dalhousie University 3300039274 Metagenome Analysis Megahit v. 1.2.8 released by JGI data releasing policy No Yes smurdock@uvic.ca Sheryl Murdock No Environmental Aquatic Hydrothermal vents Marine Tubeworm bush tubeworm bush 48.4303 -128.6821 565292569 965678 527 7 791 12 0.0 Metagenome 3300016643 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water reservoir in Singapore - WB_Site 5c, Oct Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016643 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Lake Freshwater Unclassified freshwater 1.35 103.87 36001581 43592 5 1 4 0 0.0 Metagenome 3300055088 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_43-s37 day 245 DOE Joint Genome Institute (JGI) 3300055088 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1787699062 2531049 270 162 360 178 Unrestricted 41.23 Metagenome 3300031382 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #714 DOE Joint Genome Institute (JGI) 3300031382 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4563 78.1898 454689666 872763 166 40 227 53 SRX5649539 Unrestricted 37.03 Metagenome 3300000462 *Microbiome Permanent Draft Honey bee gut microbial communities from West Haven, Conneticut, USA Honey bee gut microbial communities from West Haven, Conneticut, USA - Frischia SCG AB-598-I22 Broad Institute 3300000462 Metagenome Analysis released per JGI data release policy No Yes philipp.engel@yale.edu Philipp Engel No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Honey bee gut 32.2743 -110.9388 2262505 3723 4 0 16 0 0.0 Metagenome 3300047183 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2017 MH02_24cm DOE Joint Genome Institute (JGI) 3300047183 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.3577 19.0427 118071758 210880 93 0 170 0 Restricted 79.15 Metagenome 7000000710 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159268001 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000710 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 25755938 42187 0 0 0 0 0.0 Metagenome 3300027719 *Microbiome Permanent Draft Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - High cellulose week 11 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027719 Metagenome Analysis spades v. 3.11.1 Yes Yes rallen2@staffmail.ed.ac.uk Rosalind Allen No Environmental Aquatic Pond Freshwater Sediment Freshwater 55.9225 -3.1724 700079287 1339521 672 24 1139 24 SRX7158166 Unrestricted 0.0 Metagenome 3300050007 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume viral communities from North Pacific Ocean - CTD-AT42-06-008-2490m-0.03 v DOE Joint Genome Institute (JGI) 3300050007 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 9.83807 -104.29118 292270455 693834 118 18 189 25 Restricted 96.87 Metagenome 3300000180 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 500m DOE Joint Genome Institute (JGI) 3300000180 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 50.0 -145.0 17151026 47722 18 4 36 11 Unrestricted 0.0 Metagenome 3300070883 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_007-O-20180625-COMP-DNA1 Battelle Memorial Institute 3300070883 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 45.850153 -121.989672 3.83-4.74 48723474 131456 85 46 182 49 0.0 Metagenome 3300028288 *Microbiome Permanent Draft Lost Hammer sediment microbiome from environmental samples in Axel Heiberg Island, Canada Lost Hammer Spring sediment microbial communities from Axel Heiberg Island, Canada - LH McGill University 3300028288 Metagenome Analysis canu v. 1.7 released by JGI data releasing policy No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Sediment Spring sediment 79.117 -90.35 21065837 29683 0 0 0 0 0.0 Metagenome 3300005662 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4) (version 4) DOE Joint Genome Institute (JGI) 3300005662 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 3700483016 9869012 2053 535 3254 897 SRX2565077, SRX2565078, SRX2565079 Unrestricted 0.0 Metagenome 3300055556 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.16C.15 SIP fraction DOE Joint Genome Institute (JGI) 3300055556 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 176293985 299989 44 19 69 22 Unrestricted 10.5 Metagenome 3300025427 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 415-2 shallow-072012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025427 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 137768778 347960 166 59 321 86 SRX1987638 Unrestricted 0.0 Metagenome 3300064257 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Abby Road, Pacific Northwest, WA, USA - ABBY_070-M-20170606-COMP-DNA1 re-annotation Battelle Memorial Institute 3300064257 Metagenome Analysis metaSPAdes v. 3.15.1 imported from NMDC Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.76243 -122.33033 3497982 11253 24 6 41 5 0.0 Metagenome 3300036483 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C3-3C DOE Joint Genome Institute (JGI) 3300036483 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 93191133 289257 226 3 367 9 SRX8817527 Unrestricted 4.67 Metagenome 3300003606 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls B (FF_Mn_B) MetaG DOE Joint Genome Institute (JGI) 3300003606 Metagenome Analysis Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Lotic Freshwater Unclassified Freshwater 44.376 -110.69 111431015 205178 66 0 103 0 SRX2577163 Unrestricted 0.0 Metagenome 3300052689 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_4A1_100218_0717 DOE Joint Genome Institute (JGI) 3300052689 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 1227056794 1970841 430 137 636 190 Unrestricted 63.56 Metagenome 3300012897 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1 DOE Joint Genome Institute (JGI) 3300012897 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 585218433 1458187 558 12 1068 23 SRX3297223 Unrestricted 4.29 Metagenome 3300043602 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 058-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043602 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.922 -106.9501 723796904 1661451 438 11 795 17 Unrestricted 7.63 Metagenome 3300053738 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 endosphere DOE Joint Genome Institute (JGI) 3300053738 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.12132 -123.269603 152916259 239553 36 48 63 74 Unrestricted 0.0 Metagenome 3300002349 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 20JUL2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002349 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 25219278 63417 60 22 123 37 SRX1989904 Unrestricted 0.0 Metagenome 3300005588 *Microbiome Permanent Draft Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd47.1 DOE Joint Genome Institute (JGI) 3300005588 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jeremy.rich@maine.edu Jeremy Rich No Environmental Aquatic Coastal Marine Sediment Marine sediment 1795291386 4347824 1557 60 2552 115 SRX2837950 Unrestricted 0.0 Metagenome 3300012275 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01218 Weill Cornell Medical College 3300012275 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.87 -73.88 49580145 71771 21 0 40 0 SRX823173 0.0 Metagenome 3300061648 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0006 Microbiome Insights 3300061648 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 594203877 813779 127 5 157 6 0.0 Metagenome 3300011009 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_0.1_0.8_DNA DOE Joint Genome Institute (JGI) 3300011009 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes bcampb7@clemson.edu Barbara Campbell Yes 29703736 Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 39.2454 -76.028 704239017 1792128 983 228 1639 456 SRX2526683 Unrestricted 0.0 Metagenome 3300014613 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PW_MetaG DOE Joint Genome Institute (JGI) 3300014613 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 57.4344 16.66 704759634 1637330 417 11 607 18 SRX3602285 Unrestricted 34.57 Metagenome 3300046497 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvCe-F(3) 20-24 DOE Joint Genome Institute (JGI) 3300046497 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3547 19.0434 296046455 486951 153 1 247 1 Restricted 13.98 Metagenome 3300042385 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME10Jun2014-rr0854 DOE Joint Genome Institute (JGI) 3300042385 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 626481147 979588 199 26 289 27 Unrestricted 21.59 Metagenome 3300031988 *Microbiome Permanent Draft Microbial communities from the deep biosphere Marine subsurface sediment microbial communities from Costa Rica - 1378_B01H2_2p88mbsf re-assembly Marine Biological Laboratory 3300031988 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Coastal Marine Sediment Marine subsurface sediment 8.59234667 -84.07735833 99182 365 2 0 1 0 SRX740692 0.0 Metagenome 3300013539 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Human oral microbial communities from various locations - University of British Columbia - SCG27 University of British Columbia 3300013539 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Unclassified Human oral 248695 637 3 0 3 0 SRX143136 0.0 Metagenome 3300070330 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_073-O-20190618-COMP-DNA1 3300070330 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 41462880 122583 84 5 186 23 0.0 Metagenome 3300012340 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100227 University of Pennsylvania 3300012340 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 25825845 61852 41 0 68 0 SRX756674 0.0 Metagenome 3300044727 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 060-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044727 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9217 -106.9505 553853616 1350405 447 13 795 26 Unrestricted 8.11 Metagenome 3300050504 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Bulk soil microbial communities from a Populus tree surrounding site in Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3 re-annotation DOE Joint Genome Institute (JGI) 3300050504 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Environmental Terrestrial Tree plantation Soil Unclassified Bulk soil 35.8444 -83.9599 4348498977 9499174 1949 70 3561 104 SRX2842786 0.0 Metagenome 3300001000 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN356 DOE Joint Genome Institute (JGI) 3300001000 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 122002 387 12 3 32 2 SRX3311799 Unrestricted 0.0 Metagenome 3300048046 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BG2-14_pre-inc (version 2) DOE Joint Genome Institute (JGI) 3300048046 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3634 19.0475 213983585 404573 157 18 292 25 Restricted 0.0 Metagenome 3300037197 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 E3 1-5 DOE Joint Genome Institute (JGI) 3300037197 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0467 346228792 961475 414 37 823 61 SRX8144430 Unrestricted 6.77 Metagenome 3300006020 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - Mg.Sf.e DOE Joint Genome Institute (JGI) 3300006020 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes avisel@lbl.gov, laila.partida@cinvestav.mx Axel Visel, Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.7658 -100.163 2613340520 8191916 789 1130 1357 2127 SRX6855691 Unrestricted 0.0 Metagenome 3300059732 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1563A-3 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059732 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2103 -123.7517 148366609 353372 166 32 298 53 SRX2753760 Unrestricted 0.0 Metagenome 3300049487 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Utah, USA - logan2_2019_sed_WHONDRS-S19S_0098 DOE Joint Genome Institute (JGI) 3300049487 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 41.950204 -111.580533 577221313 1264581 858 25 1565 43 Unrestricted 12.23 Metagenome 3300026036 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_404 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026036 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 111297369 290216 177 3 303 9 SRX2564679, SRX2581041 Unrestricted 0.0 Metagenome 3300049608 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA22 DOE Joint Genome Institute (JGI) 3300049608 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 623349598 1586243 591 12 1118 20 Unrestricted 7.88 Metagenome 3300029807 *Microbiome Permanent Draft Crustal fluid microbial communities from North Pond, Mid-Atlantic Ridge, Atlantic Ocean 2014 cruise Crustal fluid microbial communities from North Pond, Mid-Atlantic Ridge, Atlantic Ocean - 1383CD 2014 Marine Biological Laboratory 3300029807 Metagenome Analysis IDBA-UD v. 1.1.2 released by JGI data releasing policy No Yes lmseyler@gmail.com Lauren Seyler No Environmental Aquatic Oceanic Marine Unclassified Oceanic crustal fluids 22.75 -46.083 27599234 42889 33 0 57 1 0.0 Metagenome 3300022931 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MG DOE Joint Genome Institute (JGI) 3300022931 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca; shallam@interchange.ubc.ca Sean Crowe; Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5847 -123.5008 918890819 1812212 498 39 711 60 SRX4482553 Unrestricted 23.27 Metagenome 3300022776 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA6 Version 2 University of New South Wales 3300022776 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 75644546 125108 100 3 129 5 0.0 Metagenome 7000000018 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 370425937 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000018 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 173109127 315060 0 0 0 0 0.0 Metagenome 3300013820 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00828 Weill Cornell Medical College 3300013820 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.73 -73.99 12748303 24537 5 0 18 0 SRX822794 0.0 Metagenome 3300040466 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_001-M-20130701-COMP-DNA1 Argonne National Laboratory 3300040466 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 3316179 9093 29 0 31 1 ERX2133925 0.0 Metagenome 7000000065 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human saliva microbial communities from NIH, USA - visit 2, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000065 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human 39.0042816 -77.1012173 19271332 46444 0 0 0 0 0.0 Metagenome 3300005056 *Microbiome Permanent Draft Deep marine subsurface microbial communities from Mid-Atlantic Ridge (IODP Expedition 336) Aquifer microbial communities from Mid-Atlantic Ridge, Atlantic Ocean - 1383C Shallow The Marine Biological Laboratory 3300005056 Metagenome Analysis IDBA-UD v1.1.1 Released bc the datasets have been published No Yes tully.bj@gmail.com, tully.bj@gmail.com; lmseyler@gmail.com Benjamin Tully, Benjamin Tully; Lauren Seyler Yes 26935537 Environmental Aquatic Aquifer Marine Formation fluid marine subseafloor aquifer 22.8 -46.05 279233715 399161 183 31 253 46 0.0 Metagenome 3300000507 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Coal-degrading lab enrichment microbial communities from Bowden, Alberta, Canada- QSAFCN5 McGill University 3300000507 Metagenome Analysis released per user request No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 51.9740275 -113.8051889 28712273 40166 35 0 69 0 0.0 Metagenome 3300028483 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E36 DOE Joint Genome Institute (JGI) 3300028483 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Elk feces 38.04 -122.5 240474292 463480 278 30 413 52 SRX5092973, SRX5092974 Unrestricted 0.0 Metagenome 3300042557 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Jul2010-rr0644 DOE Joint Genome Institute (JGI) 3300042557 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 992638684 1580127 416 70 570 117 Unrestricted 19.09 Metagenome 3300048803 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-F1(1) 20-24 DOE Joint Genome Institute (JGI) 3300048803 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0433 390082396 624280 201 1 323 1 Restricted 15.06 Metagenome 3300001184 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from University of Liverpool IonT_500pg_assembled University of Liverpool 3300001184 Metagenome Analysis Newbler v2.8 released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 16100 100 2 0 0 0 0.0 Metagenome 3300003454 *Microbiome Permanent Draft Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S5-DC05B 3300003454 Metagenome Analysis released per JGI data releasing policy No Yes julie.champagne@cnrc-nrc.gc.ca Julie Champagne No Environmental Aquatic Neritic zone/Coastal water Marine Sediment Marine sediment 53.6667 -129.1333 49265220 180996 59 0 125 1 0.0 Metagenome 3300071146 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone National Park, Wyoming, USA - YELL_005-M-20200710-COMP-DNA1 3300071146 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 8234737 26695 95 10 156 14 0.0 Metagenome 3300003829 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius algarvensis Type G CAVOLI DOE Joint Genome Institute (JGI) 3300003829 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 130996397 308404 20 8 31 17 SRX2712475 Unrestricted 0.0 Metagenome 3300010243 *Microbiome Permanent Draft Microbial communities from interfaces within marine sediments from the South China Sea Marine sediment microbial community from clay-turbidite interface sediment within the South China Sea Oregon State University 3300010243 Metagenome Analysis MetaSPAdes v.3.8.1 released per JGI data release policy No Yes michaelgraw@gmail.com Michael Graw No Environmental Aquatic Unclassified Sediment Unclassified Marine sediment 12.91889 115.04722 153.61 64016930 174547 63 0 100 1 0.0 Metagenome 3300026227 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from California, USA - DAQCA-003 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026227 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 43740780 71771 45 23 82 30 SRX2770404 Unrestricted 0.0 Metagenome 2084038011 *Microbiome Permanent Draft Hypersaline microbial communities from Antarctic Deep Lake Hypersaline microbial communities from Antarctic Deep Lake - 24m 0.1um DOE Joint Genome Institute (JGI) 2084038011 Metagenome Analysis Newbler and/or Velvet No Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli, Rick Cavicchioli; Michelle Allen Yes 24082106 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline -68.54 78.18 59385153 141524 50 0 83 0 0.0 Metagenome 3300033057 *Microbiome Permanent Draft Microbial communities from various environments in Magnetic Island Reef, Townsville, Australia Sponge tissue microbial communities from Magnetic Island Reef, Townsville, Australia - 36406 AGRF 3300033057 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes b.glasl@aims.gov.au Bettina Glasl No Host-associated Porifera Unclassified Sponge Unclassified Sponge tissue -19.1531 146.8641 599404585 1357921 232 2 362 4 0.0 Metagenome 3300010304 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015 DOE Joint Genome Institute (JGI) 3300010304 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 1082408819 2351004 636 6 1100 16 SRX2525074 Unrestricted 0.0 Metagenome 3300026907 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Synthetic microbial communities from Ohio, USA - SynthPrep_1_END_DS7_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026907 Metagenome Analysis spades v. 3.11.1 Yes Yes reginalamendella@gmail.com Regina Lamendella No Engineered Bioreactor Activated sludge Aerobic Unclassified Synthetic lake water 40.0 -83.0145 99597094 151540 36 0 53 1 SRX2839586 Unrestricted 0.0 Metagenome 3300045875 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from the Midway Geyser Basin, Yellowstone National Park, WY, United States - MSUNE_MGB_02 University of Wisconsin, Madison 3300045875 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.51987 -110.81077 60535861 104586 31 1 44 10 0.0 Metagenome 3300035283 *Microbiome Permanent Draft Uncovering the global human gut virome Simulated viral communities from multiple human gut public metagenomes - Global OTU-531984 Beijing Genomics Institute (BGI), Broad Institute, Washington University in St. Louis 3300035283 Metagenome Analysis metaSPADES v. 1.10.0, MegaHIT v. 1.1.1 released by JGI data releasing policy No Yes snayfach@gmail.com Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 37.9313884 -122.0217454 13072423 18162 0 0 0 0 0.0 Metagenome 3300026691 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized -NN621 (SPAdes) DOE Joint Genome Institute (JGI) 3300026691 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 10976655 36508 50 0 128 3 SRX3311855 Unrestricted 0.0 Metagenome 3300002748 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK08-A DOE Joint Genome Institute (JGI) 3300002748 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.4 67862 229 19 2 28 1 SRX1991359 Unrestricted 0.0 Metagenome 3300009593 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome DOE Joint Genome Institute (JGI) 3300009593 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 15.249 -20.515 3115934463 6021178 1404 1848 1938 2963 SRX2997972 Unrestricted 0.0 Metagenome 3300031898 *Microbiome Permanent Draft Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP7 DOE Joint Genome Institute (JGI) 3300031898 Metagenome Analysis spades v. 3.12.0 Yes Yes rlsimister@gmail.com Rachel Simister No Environmental Aquatic Lake Freshwater Sediment sediment -2.7726 121.4938 515116949 926349 415 0 635 1 SRX6422696 Unrestricted 31.0 Metagenome 3300034077 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A5A4.3 DOE Joint Genome Institute (JGI) 3300034077 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 188848471 569757 428 4 657 9 SRX7658906 Unrestricted 6.5 Metagenome 3300000116 *Microbiome Draft Marine microbial communities from Delaware Coast Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010 DOE Joint Genome Institute (JGI) 3300000116 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Marine 38.848917 -75.1076 590073671 1417215 280 66 465 109 Unrestricted 0.0 Metagenome 3300009119 *Microbiome Permanent Draft Freshwater sediment microbial communities Lake sediment microbial communities from Leach Lake, MN University of Minnesota - Twin Cities 3300009119 Metagenome Analysis IDBA released per JGI data release policy No Yes mill3731@umn.edu Hanna Temme No Environmental Aquatic Lake Freshwater Sediment lake sediment 47.18868 -94.626271 46682928 116106 258 1 496 1 0.0 Metagenome 3300050123 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim1 90-94 DOE Joint Genome Institute (JGI) 3300050123 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.352987 19.047292 154890588 231783 82 1 104 1 Restricted 48.91 Metagenome 3300007285 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human attached/keratinized gingiva microbial communities from NIH, USA - visit 1, subject 763496533 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007285 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Attached/Keratinized gingiva Human 39.0042816 -77.1012173 52921953 64343 47 0 62 0 0.0 Metagenome 3300070281 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dead Lake, Alabama, USA - DELA_001-M-20190626-COMP-DNA1 3300070281 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 13770443 40825 46 2 96 6 0.0 Metagenome 3300043440 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-397 Genome Quebec 3300043440 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 53.965983 -111.293303 1021382663 2464768 424 48 720 102 0.0 Metagenome 3300027912 *Microbiome Permanent Draft Kombucha Microbiome analysis Kombucha tea microbial communities from Tempe, Arizona, USA - Komliq Macrogen Inc 3300027912 Metagenome Analysis megahit v. 1.1.2 released by JGI data releasing policy No Yes nshrinath1994@gmail.com Shrinath Narayanan No Engineered Food production Unclassified Fermented beverages Unclassified Kombucha tea 33.4255 -111.94 39183828 35172 10 8 12 10 0.0 Metagenome 3300012623 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100493 University of Pennsylvania 3300012623 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 20838950 49778 32 0 35 0 SRX756505 0.0 Metagenome 3300005171 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0927_09_20cm DOE Joint Genome Institute (JGI) 3300005171 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2007172125 5586129 2180 64 3672 115 SRX2521027 Unrestricted 0.0 Metagenome 3300042717 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from Semeiov-Ash lighthouse hydrothermal vent, Atlantic Ocean - BputSym_Se-AL_3_1115C Re-assembly Max Planck Institute for Marine Microbiology 3300042717 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 13.513467 -44.963133 26270040 29768 7 2 7 1 ERX3367186 0.0 Metagenome 3300013485 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00536 Weill Cornell Medical College 3300013485 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -73.93 12024008 17725 16 0 22 0 SRX822503 0.0 Metagenome 3300029681 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36794 Beijing Genomics Institute (BGI) 3300029681 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 160251471 200442 122 0 165 0 0.0 Metagenome 3300011155 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00425 Weill Cornell Medical College 3300011155 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.74 -73.93 24927517 40183 11 0 17 0 SRX822394 0.0 Metagenome 3300021207 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Upa-Upasina ""control"", co6ic19 200bp-microeukaryotes" University of New South Wales 3300021207 Metagenome Analysis IDBA-UD released by JGI data releasing policy Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified C. singaporensis (marine sponge) -9.828217 150.820517 338895 676 0 0 0 0 0.0 Metagenome 3300057040 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E2P_30_32 DOE Joint Genome Institute (JGI) 3300057040 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9927826 -81.4891309 1371554998 2077666 579 0 918 0 Unrestricted 13.95 Metagenome 3300012679 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ299 (21.06) DOE Joint Genome Institute (JGI) 3300012679 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.0577 163.7401 973250012 2120495 702 2 1054 5 SRX3369550 Unrestricted 0.0 Metagenome 3300069575 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Mid-Atlantic, VA, USA - SCBI_006-M-20170717-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069575 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89292 -78.1395 16047471 51055 62 9 132 7 0.0 Metagenome 3300028352 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #138 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028352 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 43555309 76990 21 1 33 1 SRX3296161 Unrestricted 0.0 Metagenome 3300034384 *Microbiome Permanent Draft Forest soil microbial communities from Eldorado National Forest, California, USA Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_2.2 DOE Joint Genome Institute (JGI) 3300034384 Metagenome Analysis metaspades v. 3.13.0 Yes Yes ndove7@gmail.com Nicholas Dove No Environmental Terrestrial Temperate forest Soil Bulk soil soil 38.9738 -120.4934 1172630679 2712512 838 81 1424 106 SRX7659677 Unrestricted 10.21 Metagenome 3300060399 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210617_21_09 DOE Joint Genome Institute (JGI) 3300060399 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 412031183 607201 219 77 260 99 Unrestricted 41.33 Metagenome 3300036958 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - AD1 18 III DOE Joint Genome Institute (JGI) 3300036958 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 749259286 1368072 737 4 1178 3 SRX8361237 Unrestricted 23.37 Metagenome 3300047292 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Sacramento River, California, USA - NASQAN2016_024 DOE Joint Genome Institute (JGI) 3300047292 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.456 -121.5013 259095008 618689 260 54 530 92 Unrestricted 30.66 Metagenome 3300006154 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t30_693M_control - microbial_metagenome University of Texas Southwestern Medical Center 3300006154 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 177796478 323157 164 0 191 0 0.0 Metagenome 3300020253 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX555982-ERR598945) CEA Genoscope 3300020253 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -60.3606 -60.5096 158659471 380914 95 58 148 109 0.0 Metagenome 3300029002 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 282_12M Beijing Genomics Institute (BGI) 3300029002 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 70212261 82814 49 0 62 0 ERX491071 0.0 Metagenome 3300001713 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-43 DOE Joint Genome Institute (JGI) 3300001713 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 50.0008 -144.9989 81102429 97021 49 5 88 9 Unrestricted 0.0 Metagenome 3300015078 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Storglaciaren, Tarfala, Sweden (Sample st-11a, vegetated hydrological feature) University of Bristol 3300015078 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.904687 18.610965 7.1 83781202 200364 158 3 256 10 0.0 Metagenome 3300056706 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.4C.14 SIP fraction DOE Joint Genome Institute (JGI) 3300056706 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 192774064 340124 180 26 302 42 Unrestricted 16.41 Metagenome 3300044637 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME03Jul2018-rr0912 DOE Joint Genome Institute (JGI) 3300044637 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1094952315 1671545 468 157 557 200 Unrestricted 17.86 Metagenome 3300069396 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Moab, Southern Rockies & Colorado Plateau, UT, USA - MOAB_004-M-20170521-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069396 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.24833 -109.38827 52465722 162256 110 5 263 9 0.0 Metagenome 3300000325 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 100m DOE Joint Genome Institute (JGI) 3300000325 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.35 -123.29 194717589 443187 163 10 306 11 Unrestricted 0.0 Metagenome 3300037602 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - ARW1_20151117 DOE Joint Genome Institute (JGI) 3300037602 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 395658217 603198 205 13 277 19 SRX9140358 Unrestricted 37.46 Metagenome 3300025134 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025134 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca; jkjarett@lbl.gov Ramunas Stepanauskas; Peter Dunfield; Jessica Jarett No Environmental Aquatic Hot (42-90C) Thermal springs Acidic iron-sulfur acid spring 51.1699 -116.1578 4.19 645301280 1114953 282 7 458 8 SRX2745127 Unrestricted 0.0 Metagenome 3300031258 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1 DOE Joint Genome Institute (JGI) 3300031258 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 1077267290 2412018 359 63 618 139 SRX5357983 Unrestricted 36.42 Metagenome 3300029464 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001923-142 Beijing Genomics Institute (BGI) 3300029464 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 113342529 146596 110 0 155 0 0.0 Metagenome 3300039451 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R07 v2 DOE Joint Genome Institute (JGI) 3300039451 Metagenome Analysis MEGAHIT v. 1.2.7 Released on PI's request No Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified exposed rock -19.28 -43.5919 957033395 1749211 1067 37 1963 48 SRX4020650 0.0 Metagenome 2016842008 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP20 Bath Lake Vista Annex - Purple-Sulfur Mats v1 DOE Joint Genome Institute (JGI) 2016842008 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23761787 Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.96507 -110.71215 6.2-6.3 41493403 57652 27 0 50 0 Unrestricted 0.0 Metagenome 3300008126 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763961826 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008126 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 154487559 226995 119 0 207 0 0.0 Metagenome 3300000238 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 36 08/11/09 100m DOE Joint Genome Institute (JGI) 3300000238 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.5663346 -123.5193257 102558303 258673 80 5 155 9 Unrestricted 0.0 Metagenome 3300027244 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1555C-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027244 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2024 -123.9409 173326304 364172 156 16 245 24 SRX2753739 Unrestricted 0.0 Metagenome 3300028130 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 22D DOE Joint Genome Institute (JGI) 3300028130 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 299588878 579856 182 14 299 28 SRX5171237 Unrestricted 17.65 Metagenome 3300032178 *Microbiome Permanent Draft Serpentinized rock microbial communities from various locations Mediterranean forest soil microbial communities from Voltri Massif, Liguria, Italy - LIG_BR2_back_A1_2012 re-sequenced The Marine Biological Laboratory 3300032178 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Temperate forest Soil Bulk soil Mediterranean forest soil 44.597 8.7833 293773978 1048928 662 105 1338 237 SRX1055338, SRX1055082, SRX1055342, SRX1055343, SRX1055337 0.0 Metagenome 3300070743 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_041-M-20190805-COMP-DNA1 3300070743 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 13657179 42733 61 5 101 5 0.0 Metagenome 3300027303 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027303 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 182478178 469357 478 163 877 267 SRX3305883 Unrestricted 0.0 Metagenome 3300007955 *Microbiome Permanent Draft Microbial communities from Columbia River Estuary, Oregon, USA Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373B_3.0um Oregon State University 3300007955 Metagenome Analysis megahit released per JGI data release policy Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Coastal Marine Unclassified estuary water 46.234 -123.9163 158409263 320870 269 224 483 356 0.0 Metagenome 3300043081 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - Beaver2Rectum1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043081 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Rectum rectum 49.18 -122.54 270093341 492030 292 11 458 13 SRX8345783 Unrestricted 25.67 Metagenome 7000000127 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159268001 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000127 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 120332412 202521 0 0 0 0 0.0 Metagenome 3300070951 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_033-O-20200715-COMP-DNA1 3300070951 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 33861319 94115 70 9 140 18 0.0 Metagenome 3300003873 *Microbiome Permanent Draft Black Smoker Hydrothermal vent Microbial communities from Manus Basin , Bismarck Sea Black Smoker Hydrothermal vent Microbial communities from Manus Basin , Bismarck Sea - Sample 373Bnorm Max Planck Institute for Plant Breeding Research 3300003873 Metagenome Analysis BBNorm/IDBA_UD released per JGI data release policy No Yes ppjevac@mpi-bremen.de, pjevac@microbial-ecology.net Petra Pjevac No Environmental Aquatic Hydrothermal vents Marine Black smokers Black smoker hydrothermal chimney -3.565 149.989 113872061 143076 69 7 89 6 0.0 Metagenome 3300037440 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVT2_Sep_66_v DOE Joint Genome Institute (JGI) 3300037440 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2858306052 4457177 826 8 1312 14 SRX9163091 Unrestricted 17.33 Metagenome 3300021417 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Coastal seawater microbial communities from Marineland, Florida, United States - SWPA TP1 #3 DOE Joint Genome Institute (JGI) 3300021417 Metagenome Analysis spades v. 3.11.1-check Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6703 -81.2145 225704644 351358 219 0 232 0 SRX3985551 Unrestricted 38.24 Metagenome 3300027422 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A1-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300027422 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 14561124 50397 64 1 121 2 SRX1991103 Unrestricted 0.0 Metagenome 3300007667 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1558A-3 DOE Joint Genome Institute (JGI) 3300007667 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2763 -124.0055 243646086 490369 316 95 544 144 SRX2753755 Unrestricted 0.0 Metagenome 3300059763 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1547B-3 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059763 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2314 -123.8828 183001805 394029 162 19 266 35 SRX2753627 Unrestricted 0.0 Metagenome 3300064762 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 592 in High Prairie, Alberta, Canada - S00JY_0673 Microbiome Insights 3300064762 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 55.24151489 -116.2510406 30964548 43481 40 1 62 0 0.0 Metagenome 3300047645 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - EG-06_D50 (version 2) DOE Joint Genome Institute (JGI) 3300047645 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3533 19.0466 163922720 299866 198 1 361 0 Restricted 0.0 Metagenome 3300008672 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 764487809 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008672 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 200079075 256044 141 1 186 1 0.0 Metagenome 3300001553 *Microbiome Finished Human fecal microbial communities from the University of Tokyo, Japan, of healthy Japanese infants and adults Human fecal microbial communities from the University of Tokyo - healthy human sample In-E, Infant, Male 3300001553 Metagenome Analysis PCAP released per Nikos No Yes hattori@k.u-tokyo.ac.jp Hattori M Yes 17916580 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 35.71 139.76 0 0 0 0 0 0 0.0 Metagenome 3300031572 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19 DOE Joint Genome Institute (JGI) 3300031572 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1479544234 3504537 400 3 639 9 SRX5665114 Unrestricted 12.22 Metagenome 3300038653 *Microbiome Permanent Draft Cryoconite microbiome from cyroconite holes in Resolute Bay, NU, Canada Cryoconite microbial community from Resolute Bay, Canada - ClaremontCryo McGill University 3300038653 Metagenome Analysis canu v. 1.8 released by JGI data releasing policy No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Aquatic Sea ice Marine Cryoconite Cryoconite 74.44707 -95.0348 6 16379373 21863 23 2 37 3 0.0 Metagenome 3300024431 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from Kermadec Trench to uncover new lineages of life (NeLLi) - N075 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300024431 Metagenome Analysis spades v. 3.11.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Ocean trench Marine Sediment Deep subsurface -32.8507 -177.6629 1290797414 2577294 560 22 915 36 SRX3204062 Unrestricted 0.0 Metagenome 3300017680 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_07NOV2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017680 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 184980392 370050 187 142 279 266 SRX3927727 Unrestricted 7.46 Metagenome 3300022350 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Lake Baghdad, Rottnest Island (WA - Australia) - LBBM3 JM48 AGRF 3300022350 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.994794 115.523776 37051997 70767 38 0 41 0 0.0 Metagenome 3300027111 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027111 Metagenome Analysis spades v. 3.11.1 Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Host-associated Plants Nodule Roots Unclassified Root nodules 34.0722 -118.4441 234796731 333225 209 8 161 8 SRX2918665 Unrestricted 0.0 Metagenome 3300031860 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25 DOE Joint Genome Institute (JGI) 3300031860 Metagenome Analysis spades v. 3.13.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1041342171 2439175 264 0 400 4 SRX5817224 Unrestricted 12.32 Metagenome 3300045976 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R DOE Joint Genome Institute (JGI) 3300045976 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 14.75 -16.85 2615199168 4524354 794 85 1292 114 Unrestricted 17.07 Metagenome 3300045731 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_2_B DOE Joint Genome Institute (JGI) 3300045731 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 145825348 189721 97 3 113 4 Unrestricted 114.69 Metagenome 3300018090 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG DOE Joint Genome Institute (JGI) 3300018090 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 4.0627 -73.195 2672388737 5627046 1567 16 2836 35 SRX3936782 Unrestricted 6.27 Metagenome 3300042396 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME16Nov2016-rr0871 DOE Joint Genome Institute (JGI) 3300042396 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 502515529 794720 243 66 338 93 Unrestricted 20.0 Metagenome 3300047554 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Pringle Creek, Alvord, Texas, USA - pringlecreek_2019_sw_WHONDRS-S19S_0025 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047554 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 33.3783 -97.7833 434523502 679070 188 22 298 46 Unrestricted 0.0 Metagenome 3300029035 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 244_12M Beijing Genomics Institute (BGI) 3300029035 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 103632657 133762 81 0 159 0 ERX491023 0.0 Metagenome 3300064897 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0700 Microbiome Insights 3300064897 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.33140284 -114.1207075 3472167 4927 1 0 4 0 0.0 Metagenome 3300000433 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 DOE Joint Genome Institute (JGI) 3300000433 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 2026191 6467 51 15 87 20 SRX1986308, SRX2021689, SRX1986307 0.0 Metagenome 3300035192 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0817M02 DOE Joint Genome Institute (JGI) 3300035192 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0387 1338050699 2956407 856 6 1576 6 SRX8264352 Unrestricted 6.56 Metagenome 3300037635 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037635 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.51 -76.2 415059607 1004981 6 0 13 0 SRX3197243, SRX3197244 Unrestricted 0.0 Metagenome 3300008099 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763820215 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008099 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 100331678 133068 47 0 76 0 0.0 Metagenome 3300030217 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces viral communities from colorectal cancer patient in Ann Arbor, USA - MG100080 University of Michigan 3300030217 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 42.28 -83.74 2174050 4023 4 0 6 0 0.0 Metagenome 3300032194 *Microbiome Permanent Draft Microbial communities from various environments in Magnetic Island Reef, Townsville, Australia Seawater microbial communities from Magnetic Island Reef, Townsville, Australia - 36328 AGRF 3300032194 Metagenome Analysis SpAdes v. 3.13.0 released by JGI data releasing policy Yes Yes b.glasl@aims.gov.au Bettina Glasl No Environmental Aquatic Coastal Marine Unclassified Seawater -19.1531 146.8641 940912099 2116439 410 57 603 164 0.0 Metagenome 3300071022 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_001-M-20200601-COMP-DNA1 3300071022 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 28889703 91164 88 9 155 15 0.0 Metagenome 3300043725 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - II_P72_A50 DOE Joint Genome Institute (JGI) 3300043725 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.1699 -62.8323 895106406 2489636 628 10 1234 14 Unrestricted 7.69 Metagenome 3300012257 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00924 Weill Cornell Medical College 3300012257 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.94 35280912 58701 17 0 36 0 SRX822887 0.0 Metagenome 3300005378 *Microbiome Permanent Draft Marine microbial communities from Deepwater Horizon subsurface plume in Gulf of Mexico Marine microbial communities from Deepwater Horizon subsurface plume in Gulf of Mexico, 52-4 In plume DOE Joint Genome Institute (JGI) 3300005378 Metagenome Analysis Rnnotater No Yes rivers@uga.edu Adam R. Rivers, Adam Rivers Yes 23902988 Environmental Aquatic Hydrothermal vents Marine Black smokers Subsurface plume 28.716667 -88.466667 52555614 102800 5 13 46 38 0.0 Metagenome 3300002481 *Microbiome Permanent Draft Deep subsurface and oceanic microbial communities from Witwatersrand Basin, South Africa, and the Canadian and Fennoscandian shields and at the Lost City Hydrothermal Field Deep oceanic, basalt-hosted subsurface ecosystem from Juan de Fuca Ridge flank, Pacific Ocean, CORK Borehole 1362A_J2.573 DOE Joint Genome Institute (JGI) 3300002481 Metagenome Analysis Yes Yes rstepanauskas@bigelow.org, seanpj@hawaii.edu; rstepanauskas@bigelow.org; cssulliv@hawaii.edu; rappe@hawaii.edu Ramunas Stepanauskas, Sean Jungbluth; Ramunas Stepanauskas; Clarisse Sullivan; Michael Rappe Yes 28270584, 28350381, 28396823, 29467397 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Deep oceanic, basalt-hosted subsurface hydrothermal fluid 47.76 -127.76 -2667 169908118 271595 198 0 315 2 SRX753337, SRX1880758 Unrestricted 0.0 Metagenome 2100351008 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - YNP_Beowulf Spring_E v1 DOE Joint Genome Institute (JGI) 2100351008 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.733 -110.708917 2.84 66680933 140835 42 1 79 0 Unrestricted 0.0 Metagenome 3300034109 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME26Aug2009-rr0158 DOE Joint Genome Institute (JGI) 3300034109 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1110121302 2348569 698 161 1011 286 SRX7622492 Unrestricted 10.8 Metagenome 3300026653 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1105 (SPAdes) DOE Joint Genome Institute (JGI) 3300026653 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 6392998 18009 53 3 62 5 SRX1987007 Unrestricted 0.0 Metagenome 3300048122 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_130417.NP1 DOE Joint Genome Institute (JGI) 3300048122 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 189388283 471895 208 25 310 36 Unrestricted 42.29 Metagenome 3300009551 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG DOE Joint Genome Institute (JGI) 3300009551 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 4035493088 8066354 2971 200 4785 378 SRX3203318 Unrestricted 0.0 Metagenome 3300042120 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913L_E14_082316_2192 DOE Joint Genome Institute (JGI) 3300042120 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.1836 -97.9974 103537158 309800 221 6 422 11 Unrestricted 6.32 Metagenome 3300019727 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FRT_3-4_MG DOE Joint Genome Institute (JGI) 3300019727 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 117227740 289194 215 11 431 20 SRX3983245 Unrestricted 3.5 Metagenome 3300034055 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A3A4.2 DOE Joint Genome Institute (JGI) 3300034055 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 196417443 576252 391 3 690 6 SRX7658844 Unrestricted 6.52 Metagenome 3300048818 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 P3 30-34 DOE Joint Genome Institute (JGI) 3300048818 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3535 19.0473 664749808 974912 148 3 246 6 Restricted 14.4 Metagenome 3300025658 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_10m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025658 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 445157389 828401 335 11 406 17 Unrestricted 0.0 Metagenome 3300004251 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 97_LOW12 DOE Joint Genome Institute (JGI) 3300004251 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 58050789 126427 38 0 74 0 SRX2721171 Unrestricted 0.0 Metagenome 3300017471 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS374 with 0.1UM filter JGI facility at Oak Ridge National Laboratory 3300017471 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 32880232 81209 19 10 41 10 SRX024780 0.0 Metagenome 3300017616 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - L311-01 University of Michigan 3300017616 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.67928 -84.4849 5696464 7216 4 0 4 0 0.0 Metagenome 3300028617 *Microbiome Permanent Draft Microbial communities from Yellowstone National Park hot springs 2017 Hot spring sediment microbial communities from Stumped Spring Outflow 2, Yellowstone National Park, USA - 170629H University of Minnesota 3300028617 Metagenome Analysis SPAdes v. 3.11.0 released by JGI data releasing policy Yes Yes trinityh@umn.edu Trinity Hamilton No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.5325 -110.7977 8.555 131707792 292784 77 0 93 0 0.0 Metagenome 3300004460 *Microbiome Permanent Draft Marine viral communities from Newfoundland, Canada Marine viral communities from Newfoundland, Canada BC-1 Yale University 3300004460 Metagenome Analysis CLC Bio released per JGI data release policy No Yes olga.zhaxybayeva@dartmouth.edu Olga Zhaxybayeva No Environmental Aquatic Coastal Marine Unclassified Marine 47.593411 -52.885466 241134995 631190 19 3 42 1 0.0 Metagenome 3300006638 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A DOE Joint Genome Institute (JGI) 3300006638 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.299 -156.61 1329600005 3349557 1216 41 1975 93 SRX2900831 Unrestricted 0.0 Metagenome 7000000003 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765135172 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000003 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 13731336 27548 0 0 0 0 0.0 Metagenome 3300028958 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 536_4M Beijing Genomics Institute (BGI) 3300028958 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 41243551 50814 32 0 54 0 ERX491186 0.0 Metagenome 3300033075 *Microbiome Finished Gwangju Wastewater Treatment Plant Virome, South Korea Activated sludge viral community from Jangsung wastewater treatment plant, Jangsung, South Korea - JWWTP-sludge v.1 Macrogen 3300033075 Metagenome Analysis SPAdes v. 3.10.1 released by JGI data releasing policy No Yes chojc@inha.ac.kr Jang-Cheon Cho No Engineered Wastewater Unclassified Activated Sludge Unclassified Activated sludge 35.279013 126.762049 52941740 79218 0 0 0 0 0.0 Metagenome 3300007540 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG DOE Joint Genome Institute (JGI) 3300007540 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 37.1 -76.0972 395565545 955287 0 0 0 0 SRX3362780, SRX3362781, SRX2753471 Unrestricted 0.0 Metagenome 3300003271 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_18_M0_10 DOE Joint Genome Institute (JGI) 3300003271 Metagenome Analysis Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 146792966 320551 235 30 373 71 SRX2570689 Unrestricted 0.0 Metagenome 3300048865 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD20 DOE Joint Genome Institute (JGI) 3300048865 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.347657 -119.2808 79937761 94519 11 6 16 11 Unrestricted 361.0 Metagenome 3300025346 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE06Aug07 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025346 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 40639200 107894 25 26 45 90 SRX2565197 Unrestricted 0.0 Metagenome 3300025917 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025917 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn rhizosphere 42.3948 -85.3738 3090056966 7179962 1379 108 2600 196 SRX2740408 Unrestricted 0.0 Metagenome 3300049613 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MC15 DOE Joint Genome Institute (JGI) 3300049613 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 43870328 106330 119 2 254 3 Unrestricted 24.71 Metagenome 3300007296 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 764184357 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007296 Metagenome Analysis SPADES 3.6.1 released per Rekha Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 140103987 180106 145 0 218 0 0.0 Metagenome 3300011177 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #134 DOE Joint Genome Institute (JGI) 3300011177 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 80910744 150026 76 1 132 2 SRX2526862 Unrestricted 0.0 Metagenome 3300004182 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 2_LOW4 DOE Joint Genome Institute (JGI) 3300004182 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 232898262 669284 154 0 293 1 SRX2719628 Unrestricted 0.0 Metagenome 3300008161 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 706846339 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008161 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 147282852 226876 111 0 127 3 0.0 Metagenome 3300040543 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_001-O-20140708-COMP-DNA1 Argonne National Laboratory 3300040543 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 2683756 8137 36 15 75 23 ERX2134009 0.0 Metagenome 3300033183 *Microbiome Permanent Draft Marine Lake Metagenomes Marine lake microbial communities from Goby Lake in Palau - P13001_2A Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300033183 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy No Yes mbeman@ucmerced.edu Michael Beman No Environmental Aquatic Marine lake Marine Unclassified Marine 7.31518333 134.5022167 254107454 295062 87 3 102 5 0.0 Metagenome 3300022059 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 46 SPOT_SRF_2013-08-14 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022059 Metagenome Analysis spades v. 3.11.1-check Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 1112739 3994 8 0 20 3 SRX5471850, SRX5471849, SRX5471848 Unrestricted 0.0 Metagenome 3300031453 *Microbiome Permanent Draft Rock endolithic microbial communities from Victoria Land, Antarctica Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud DOE Joint Genome Institute (JGI) 3300031453 Metagenome Analysis spades v. 3.12.0 Yes Yes selbmann@unitus.it Laura Selbmann Yes 32139564 Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock -75.8 159.9 850363872 1301192 149 58 170 74 SRX5225107 Unrestricted 34.79 Metagenome 3300014608 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01459 Weill Cornell Medical College 3300014608 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.65 -73.96 29946813 41701 13 0 22 0 SRX823356 0.0 Metagenome 3300005779 *Microbiome Permanent Draft Human lung microbial communities from healthy (non-smokers and smokers) and HIV infected subjects Human lung microbial communities from Normal Control Background 110705-1 New York University Langone Medical Center 3300005779 Metagenome Analysis Shotgun released per JGI data release policy No Yes leopoldo.segal@nyumc.org Leopoldo N Segal No Host-associated Mammals: Human Lung Respiratory system Unclassified Lung Microbiome 40.7127 -74.0059 22205063 66052 1 2 2 2 0.0 Metagenome 3300014487 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG DOE Joint Genome Institute (JGI) 3300014487 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Environmental Terrestrial Agricultural land Soil Unclassified Soil 21.195 -100.439 1033473520 2521124 1530 58 2908 125 SRX6855689 Unrestricted 6.34 Metagenome 3300001472 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-32 DOE Joint Genome Institute (JGI) 3300001472 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 49.2833 -134.6666 317632362 749355 6 1 11 6 SRX2553658 Unrestricted 0.0 Metagenome 3300020458 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000749 (ERX556123-ERR599000) CEA Genoscope 3300020458 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -20.9724 -35.2742 1143404458 2941295 729 87 1449 159 0.0 Metagenome 3300013496 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00822 Weill Cornell Medical College 3300013496 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.75 -73.98 23391066 43449 7 0 13 0 SRX822788 0.0 Metagenome 3300009711 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR2_MetaG DOE Joint Genome Institute (JGI) 3300009711 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 36.29 139.38 720528240 1439783 868 2 1352 2 SRX2338868 Unrestricted 0.0 Metagenome 3300012092 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ445A (23.06) DOE Joint Genome Institute (JGI) 3300012092 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.0795 163.805 681401605 1448922 490 3 884 5 SRX3369948 Unrestricted 0.0 Metagenome 3300037792 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - Pt-27 DOE Joint Genome Institute (JGI) 3300037792 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 94241373 115129 34 4 45 4 SRX9140383 Unrestricted 100.17 Metagenome 3300012189 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG DOE Joint Genome Institute (JGI) 3300012189 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Saprolite Vadose zone soil 39.7291 -123.6419 3003117073 6146713 1493 57 2615 86 SRX3373047 Unrestricted 0.0 Metagenome 3300014090 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_099 The George Washington University (GWU) 3300014090 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 17899777 37313 23 4 59 6 SRX656232 0.0 Metagenome 3300020247 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556048-ERR598962) CEA Genoscope 3300020247 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -5.2476 -85.3343 159685165 435111 220 6 353 14 0.0 Metagenome 3300043656 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 378-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043656 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9908 -107.0604 444977081 1195040 391 26 749 40 Unrestricted 7.62 Metagenome 3300013321 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100127 University of Pennsylvania 3300013321 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4731776 13669 8 0 12 0 SRX756705 0.0 Metagenome 3300071010 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_008-M-20190617-COMP-DNA1 3300071010 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 6031778 19943 56 0 103 3 0.0 Metagenome 3300055467 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.3C.15 SIP fraction DOE Joint Genome Institute (JGI) 3300055467 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 165289645 326800 167 27 292 45 Unrestricted 10.78 Metagenome 3300013754 *Microbiome Permanent Draft Terrestrial microbial communites from a soil warming plot in Okalahoma, USA Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C1.rep2 Georgia Institute of Technology 3300013754 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial 34.975667 -97.519 117845553 391619 53 3 136 11 SRX352025 0.0 Metagenome 3300002180 *Microbiome Permanent Draft Marine microbial communities from the Santa Barbara Channel oil seeps Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 7 DOE Joint Genome Institute (JGI) 3300002180 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes mhess@lbl.gov, mhess@ucdavis.edu Matthias Hess Yes 25197496 Environmental Aquatic Oil seeps Marine Unclassified Marine 34.39225 -119.845662 692506775 1542321 840 7 1455 21 SRX2554729 Unrestricted 0.0 Metagenome 3300026872 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 74 (SPAdes) DOE Joint Genome Institute (JGI) 3300026872 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 62693602 153665 80 0 156 0 SRX4341353 Unrestricted 0.0 Metagenome 3300015335 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_31MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015335 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 220321830 366449 8 59 10 108 SRX3922896 Unrestricted 7.34 Metagenome 3300043348 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 161-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043348 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9829 -107.0092 537187984 1468168 497 29 921 42 Unrestricted 7.42 Metagenome 3300044676 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Estuarine water microbial communities from San Francisco Bay, California, United States - Dec18_FB_4_27D DOE Joint Genome Institute (JGI) 3300044676 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 37.6183 -122.2916 1083237564 1802592 438 117 678 172 Unrestricted 46.23 Metagenome 3300056696 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.5W.7 SIP fraction DOE Joint Genome Institute (JGI) 3300056696 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 110064059 214258 93 4 145 7 Unrestricted 23.52 Metagenome 3300026560 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 1 Metagenome VIRRA1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026560 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.8136 77.9341 12200982 17983 5 0 8 0 SRX2839852 Unrestricted 0.0 Metagenome 3300014774 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01602 Weill Cornell Medical College 3300014774 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.87 -73.88 88306780 169893 57 3 85 8 SRX823417 0.0 Metagenome 3300017525 *Microbiome Permanent Draft Archaeal and Bacterial diversity and function in deep-sea hydrothermal influenced sediments Deep-sea sediment microbial communities from hydrothermal vent field in the North Atlantic Ocean - Menez Gwen vent Biocant 3300017525 Metagenome Analysis Spades released by JGI data releasing policy No Yes cerqueira.mt@gmail.com Teresa Cerqueira No Environmental Aquatic Hydrothermal vents Marine Sediment sediment 37.8445 -31.519255 4 213248925 398414 97 3 182 5 0.0 Metagenome 3300000664 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 62 DOE Joint Genome Institute (JGI) 3300000664 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 2804079 8741 18 0 24 0 SRX4341286 Unrestricted 0.0 Metagenome 3300070517 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_048-M-20180220-COMP-DNA1 Battelle Memorial Institute 3300070517 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 37.110011 -119.735218 5.33-7.41 5474181 17640 66 6 136 8 0.0 Metagenome 3300011923 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00472 Weill Cornell Medical College 3300011923 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.8 -73.94 10294541 12968 14 0 19 0 SRX822441 0.0 Metagenome 3300003066 *Microbiome Permanent Draft Marine Synechococcus communities from coastal surface water at La Jolla, California, USA Marine Synechococcus microbial communities from coastal surface water at La Jolla, California, USA - SRS00536 J. Craig Venter Institute (JCVI) 3300003066 Metagenome Analysis Made public because these are downloaded from Genbank No Yes bpalenik@ucsd.edu Brian Palenik Yes 19196269 Environmental Aquatic Unclassified Marine Unclassified Marine 32.850317 -117.27494 307378 1337 3 0 5 0 0.0 Metagenome 3300002462 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Microcerotermes parvus P4 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P4 DOE Joint Genome Institute (JGI) 3300002462 Metagenome Analysis Yes Yes karen.rossmassler@gmail.com, brune@mpi-marburg.mpg.de Karen Rossmassler, Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Hindgut Digestive system P4 segment Termite gut -4.7 11.83 1799722629 3999986 962 14 1732 20 SRX2554836 Unrestricted 0.0 Metagenome 3300009134 *Microbiome Permanent Draft Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin Marine sediment microbial communities from methane seeps on Chincoteague Slope, US Atlantic Margin - Chincoteague Slope PC-6 397 cmbsf Oregon State University 3300009134 Metagenome Analysis MetaSPAdes released per JGI data release policy No Yes rcolwell@coas.oregonstate.edu Frederick Colwell No Environmental Aquatic Unclassified Sediment Unclassified Marine Sediment 37.53516667 -74.29791667 34781195 60715 12 0 23 0 0.0 Metagenome 3300042828 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143 NMDC pilot DOE Joint Genome Institute (JGI) 3300042828 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92045766 -106.94845279 1174728581 2775029 645 18 1079 30 SRX5354684 0.0 Metagenome 3300048110 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_120111.NP2 DOE Joint Genome Institute (JGI) 3300048110 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 542445645 1182640 360 50 551 100 Unrestricted 15.13 Metagenome 3300007835 *Microbiome Permanent Draft Clones from fosmidial library constructed using mangrove sediment Mangrove sediment microbial communities from Bertioga, Sao Paulo, Brazil - Clones from fosmid library, F8_contig1 Molecular Research LP (MR DNA) 3300007835 Metagenome Analysis IDBA released per JGI data release policy No Yes luc.g.cabral@gmail.com Luc?lia Cabral, Lucelia Cabral No Environmental Aquatic Unclassified Sediment Unclassified sediment -23.8553 -46.1394 28396 24 0 0 0 0 0.0 Metagenome 3300070831 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_047-M-20200708-COMP-DNA1 3300070831 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 13541453 43060 63 7 101 12 0.0 Metagenome 3300005464 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0025m University of Hawaii 3300005464 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 35604101 54427 42 1 54 2 0.0 Metagenome 3300049342 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CCF3 DOE Joint Genome Institute (JGI) 3300049342 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 228255872 631821 315 13 564 16 Unrestricted 6.8 Metagenome 3300049760 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F12_A_4_control DOE Joint Genome Institute (JGI) 3300049760 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 153362195 375413 357 29 674 57 Unrestricted 9.73 Metagenome 3300012167 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT333_2 DOE Joint Genome Institute (JGI) 3300012167 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8895 -106.9077 224271076 482309 229 28 469 37 SRX3368480 Unrestricted 0.0 Metagenome 3300003317 *Microbiome Permanent Draft Cnidaria microbial communities from the Caribbean, with Black Band disease Belize BBD 4 3300003317 Metagenome Analysis IDBA-UD released per PI's request No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified Cnidaria 16.80288 -88.08213 279467519 616935 86 49 178 65 0.0 Metagenome 3300002004 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot19-1 3300002004 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 3641770 21314 84 0 137 1 0.0 Metagenome 3300012841 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched pill bug-associated microbial communities from UW Madison campus, WI, USA - HID1972K_E1 MG DOE Joint Genome Institute (JGI) 3300012841 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 93833202 138065 94 2 141 3 SRX3564589 Unrestricted 0.0 Metagenome 3300011203 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01036 Weill Cornell Medical College 3300011203 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.67 -73.87 33723053 45575 11 0 16 0 SRX822998 0.0 Metagenome 3300022291 *Microbiome Permanent Draft Anaerobic microbial community of wastewater bioreactor in Changsha, Hunan, China Activated sludge microbial communities from anaerobic bioreactor in Hunan University, Changsha, China - 5 Beijing Novogene Bioinformatics Technology Co., Ltd 3300022291 Metagenome Analysis IDBA v.1.1.1 released by JGI data releasing policy No Yes yuezheng@uw.edu Yue Zheng No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 28.2127 113.0106 634006126 1176877 513 3 877 4 0.0 Metagenome 3300041437 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass leaf microbial community from Lincoln, Canterbury, New Zealand - RGL18_8 MetaG AgResearch, New Zealand, Mosgeil 3300041437 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 329841056 537365 62 194 179 177 0.0 Metagenome 3300011344 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100766 University of Pennsylvania 3300011344 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 5720924 11034 5 8 17 9 SRX756084 0.0 Metagenome 3300005002 *Microbiome Permanent Draft Marine and wastewater microbial communities from Korea, with extracellular vesicles Wastewater microbial communities from Nanji, Korea with extracellular vesicles - Nanji-0.2um Chunlab, Inc 3300005002 Metagenome Analysis IDBA-1.1.1 released per JGI data release policy No Yes s-jkim@kiost.ac Sang-Jin Kim No Engineered Wastewater Unclassified Unclassified Unclassified Wastewater 37.3132 126.828 117855606 255699 233 9 349 12 0.0 Metagenome 3300055489 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.4W.12 SIP fraction DOE Joint Genome Institute (JGI) 3300055489 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 169921053 266587 134 32 195 32 Unrestricted 15.27 Metagenome 3300001547 *Microbiome Permanent Draft Microbial community impact on carbon sequestration in managed wetland Carbon farming Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site C1 Bulk DOE Joint Genome Institute (JGI) 3300001547 Metagenome Analysis Metagenome Standard Draft Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Sediment Wetland 38.1075 -121.6497 160092211 432551 457 17 813 22 SRX2553230, SRX2553231 0.0 Metagenome 3300043749 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Para, Brazil - FS14 DOE Joint Genome Institute (JGI) 3300043749 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -2.7058 -54.7864 865466907 2193576 438 5 795 8 Unrestricted 8.11 Metagenome 2014642003 *Microbiome Permanent Draft Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) - 6_Oxygen_minimum_layer_770m DOE Joint Genome Institute (JGI) 2014642003 Metagenome Analysis No Yes delong@mit.edu Edward DeLong Yes 16439655 Environmental Aquatic Oceanic Marine Aphotic zone Marine 22.45 -158.0 11811597 16686 2 0 0 0 0.0 Metagenome 3300008251 *Microbiome Permanent Draft Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico and Hudson Canyon, USA Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM8C Gulf of Mexico DOE Joint Genome Institute (JGI) 3300008251 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mcredmond@uncc.edu Molly C. Redmond No Environmental Aquatic Cold seeps Marine Unclassified Methane seep mesocosm 27.37 -90.57 1019492571 1853073 1541 1 2065 0 Unrestricted 0.0 Metagenome 3300035316 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Eunicella verrucosa from Algarve, Portugal - EV01H Euk Molecular Research LP (MR DNA) 3300035316 Metagenome Analysis Metawrap workflow v. 1.0.5 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 5421525 4299 0 1 0 1 0.0 Metagenome 3300055535 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.17W.15 SIP fraction DOE Joint Genome Institute (JGI) 3300055535 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 269097395 462160 113 32 171 52 Unrestricted 11.42 Metagenome 7000000632 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 763982056 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000632 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 86839308 123284 0 0 0 0 0.0 Metagenome 3300044818 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_45BD DOE Joint Genome Institute (JGI) 3300044818 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4934 -106.0708 790186998 1428379 375 19 684 34 SRX20649833 Unrestricted 18.26 Metagenome 3300003785 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH06Jun08 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003785 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 20337698 50837 15 9 28 8 SRX2565405 Unrestricted 0.0 Metagenome 3300018469 *Microbiome Permanent Draft Populus soil microbial communities from riparian zone of different river systems in the western United States Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T DOE Joint Genome Institute (JGI) 3300018469 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jen.schweitzer@utk.edu Jennifer Schweitzer No Environmental Terrestrial Riparian zone Soil Unclassified soil 41.136 -111.9047 4851033254 11069847 2966 102 4931 170 SRX3901428 Unrestricted 6.17 Metagenome 3300042112 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lake Yojoa, Honduras - Yojoa_01_2020_E_meta (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300042112 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Lake Freshwater Unclassified Freshwater 14.8744 -87.9835 1150397696 2275040 681 152 1033 274 Unrestricted 13.92 Metagenome 3300045114 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - LOSB3-9-6-19 DOE Joint Genome Institute (JGI) 3300045114 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.0986 -120.7169 221681200 653036 427 24 794 42 Restricted 7.16 Metagenome 3300035067 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - C6-14 Autonomous University of Barcelona 3300035067 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 91036272 364481 1121 1 2044 0 0.0 Metagenome 3300038647 *Microbiome Permanent Draft Cryoconite microbiome from cyroconite holes in Resolute Bay, NU, Canada Cryoconite microbial community from Resolute Bay, Canada - CryoVolTRAX McGill University 3300038647 Metagenome Analysis canu v. 1.8 released by JGI data releasing policy No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Aquatic Sea ice Marine Cryoconite Cryoconite 74.44707 -95.0348 6 9350890 12723 31 5 26 4 0.0 Metagenome 3300024958 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 28_LOW6 (SPAdes) DOE Joint Genome Institute (JGI) 3300024958 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 95132069 147403 37 0 52 1 SRX2720211 Unrestricted 0.0 Metagenome 3300008460 *Microbiome Permanent Draft Host-associated microbial communities of aphids from plants in several locations around USA Microbial communities of aphids from sagebrush in Onefour, Alberta, CA - Artemisaphis artemisicola CNC#HEM063374 University of Texas, Austin 3300008460 Metagenome Analysis CLC Genomics released per JGI data release policy Yes Yes becky.chong@utexas.edu Rebecca Chong No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified sagebrush 49.115537 -110.468757 79658169 53683 5 1 8 2 0.0 Metagenome 3300012448 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100238 University of Pennsylvania 3300012448 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 11260551 22262 4 1 10 2 SRX756663 0.0 Metagenome 3300052936 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Wyoming, USA - M_L2_S2 DOE Joint Genome Institute (JGI) 3300052936 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 41.11606 -106.14926 598839193 923904 153 45 243 61 Unrestricted 33.74 Metagenome 3300016675 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water catchment in Singapore - WC_Site 1a, Aug Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016675 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Unclassified Freshwater Unclassified surface waters 1.35 103.87 93970631 131420 22 1 24 2 0.0 Metagenome 3300045241 *Microbiome Permanent Draft Forest soil microbial communities from boreal-temperate forests in Minnesota, USA Forest soil microbial communities from Cloquet Forestry Center, Minnesota, USA - Cloquet DRY WO F3 DOE Joint Genome Institute (JGI) 3300045241 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pankaj.trivedi@colostate.edu Pankaj Trivedi No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 46.31 -92.3 756429182 1263719 278 16 520 22 Unrestricted 17.15 Metagenome 3300070757 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_041-M-20190619-COMP-DNA1 3300070757 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 872835 2895 20 2 26 3 0.0 Metagenome 3300010969 *Microbiome Permanent Draft Inactive Hydrothermal Chimney Metagenome Study Microbial communities from the outside layer of the microbial mat covering an inactive hydrothermal chimney from the Kolumbo submarine volcano, Santorini, Greece - V16_c.out Hellenic Centre for Marine Research (HCMR) 3300010969 Metagenome Analysis MIRA 4.9.5_2 released by JGI data releasing policy Yes Yes ch.christakis@yahoo.gr Christos Christakis No Environmental Aquatic Hydrothermal vents Marine Microbial mats Hydrothermal chimney microbial mat 36.52 25.48 196554973 340534 157 8 191 9 0.0 Metagenome 3300004161 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 40_LOW7 DOE Joint Genome Institute (JGI) 3300004161 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 63473340 159289 41 0 70 0 SRX2720570 Unrestricted 0.0 Metagenome 3300036838 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_July_plot5_rep1 DOE Joint Genome Institute (JGI) 3300036838 Metagenome Analysis metaspades v. 3.13.0 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6541 -80.6298 1548004118 2626282 575 6 1002 14 SRX8669496 Unrestricted 14.36 Metagenome 3300029394 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 096_4_28_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029394 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 245395161 344625 282 1 410 0 0.0 Metagenome 3300029972 *Microbiome Permanent Draft Fecal microbial communities from free-living howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from free-living howler monkeys from Sao Paulo Zoo, Brazil - Ind. 1-3, S1 Reanalysis Center for Advanced Technologies in Genomics, Sao Paulo University 3300029972 Metagenome Analysis metaSPAdes v. 3.12.0 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 75839926 142780 117 6 141 3 0.0 Metagenome 3300039305 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Microcoleus vaginatus WJT46-NPBG5 and co-occurring heterotrophs from desert soil from Joshua Tree National Park, Colorado Desert, CA, United States - 20190301_28A DOE Joint Genome Institute (JGI) 3300039305 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Desert Soil Unclassified Desert soil 33.8188 -115.7638 91673069 109676 62 1 49 1 SRX9640412 Unrestricted 126.8 Metagenome 3300035089 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 DOE Joint Genome Institute (JGI) 3300035089 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1125 -122.987 878752127 2227332 717 57 1202 92 SRX8289430 Unrestricted 6.61 Metagenome 3300069466 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_001-O-20140708-COMP-DNA1 re-annotation Argonne National Laboratory 3300069466 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 4938021 15561 46 12 104 31 ERX2134009 0.0 Metagenome 3300027486 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepC_8d DOE Joint Genome Institute (JGI) 3300027486 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 128873211 241323 119 20 172 22 SRX5245189 Unrestricted 13.21 Metagenome 3300030371 *Microbiome Permanent Draft Wastewater microbial communities from medical facility sewage samples near Freiburg, Germany Wastewater microbial communities from medical facility sewage samples near Freiburg, Germany - C1752 University of Freiburg 3300030371 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 48.0 8.0 32156395 62305 80 0 155 0 0.0 Metagenome 3300018487 *Microbiome Permanent Draft Bovine feces microbial communities from beef and dairy calves in Davis, CA, USA Bovine feces microbial communities from beef calf in Davis, CA, USA - DMJL001M re-assembly QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018487 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes jxnliu@ucdavis.edu Jinxin Liu No Host-associated Mammals Large intestine Digestive system Fecal feces 38.5449 -121.7405 181585366 311654 203 1 306 8 0.0 Metagenome 3300010049 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3 DOE Joint Genome Institute (JGI) 3300010049 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 5.0626 -53.0462 5107989241 9397752 4396 29 6811 53 SRX2525416 Unrestricted 0.0 Metagenome 3300070438 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_004-M-20190731-COMP-DNA1 3300070438 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 14650139 46048 34 8 63 12 0.0 Metagenome 3300040717 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 039B_R1 University of Maryland 3300040717 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.22595833 24.97885278 1103610 3262 26 13 40 16 0.0 Metagenome 3300038384 *Microbiome Draft FORHOT Natural soil warming experiment in Iceland Soil microbial communities from grassland in Hveragerdi, Iceland - GN4-E Biomedical Sequencing Facility, Vienna Austria 3300038384 Metagenome Analysis spades v. 3.13.1 released by JGI data releasing policy Yes Yes craig.herbold@microbial-ecology.net Craig Herbold No Environmental Terrestrial Unclassified Soil Grasslands Soil 64.025 -21.205 372976534 532618 83 4 98 4 0.0 Metagenome 3300024352 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepB_0h DOE Joint Genome Institute (JGI) 3300024352 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 149218592 345297 162 22 270 35 SRX4547316 Unrestricted 13.14 Metagenome 3300039150 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Unnamed Pacman Lake, Antarctica - #13 Australian Centre for Ecogenomics 3300039150 Metagenome Analysis Spades v. 3.13.0 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5449 78.21925 328758206 630913 173 23 278 45 0.0 Metagenome 3300050296 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_58 DOE Joint Genome Institute (JGI) 3300050296 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -75.662 158.876 201467422 276125 31 11 38 12 SRX18236982 Restricted 62.06 Metagenome 3300020163 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-8m DOE Joint Genome Institute (JGI) 3300020163 Metagenome Analysis spades v. 3.10.1 Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.688 -93.689 604178882 1261603 514 18 933 25 SRX3984343 Unrestricted 17.8 Metagenome 3300007802 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 159268001 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007802 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 161361095 202891 110 2 208 2 0.0 Metagenome 3300026055 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleB_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026055 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.107521 -121.649681 41009351 119013 157 4 282 13 SRX7188816 Unrestricted 0.0 Metagenome 3300056814 *Microbiome Permanent Draft Mealworm larvae gut microbial communities from Newark, Delaware, USA Mealworm larvae gut microbial communities from Newark, Delaware, USA - Gut-D30_HDPE (version 2) DOE Joint Genome Institute (JGI) 3300056814 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes blenner@udel.edu Mark Blenner No Host-associated Arthropoda: Insects Gut Larva Unclassified Mealworm larvae gut 39.663708 -75.755838 182130137 180160 233 2 257 2 Unrestricted 30.11 Metagenome 3300035231 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P4_June_2015_1000m DOE Joint Genome Institute (JGI) 3300035231 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 48.65 -126.6666 382021753 919101 339 34 583 59 SRX8197531 Unrestricted 13.48 Metagenome 3300026647 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and E2 (1) (SPAdes) DOE Joint Genome Institute (JGI) 3300026647 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 70575331 117720 41 0 65 0 SRX3311657 Unrestricted 0.0 Metagenome 3300014501 *Microbiome Permanent Draft Permafrost microbial communities from Stordalen Mire, Sweden Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300014501 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rich.270@osu.edu Virginia Rich Yes 30013118 Environmental Terrestrial Wetlands Soil Permafrost Permafrost 68.35 19.05 5023069248 9077686 2024 145 3287 264 SRX3903269, SRX3903270, SRX3903272, SRX3903271, SRX3903274, SRX3903273, SRX3903275 Unrestricted 9.91 Metagenome 3300001964 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Rosario Bank, Honduras - GS018 J. Craig Venter Institute (JCVI) 3300001964 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Oceanic Marine Unclassified Marine 18.036667 -83.78472 105952902 195732 129 0 160 2 0.0 Metagenome 3300032562 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18017 DOE Joint Genome Institute (JGI) 3300032562 Metagenome Analysis spades v. 3.13.0 Yes Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.0411 -89.6861 836041328 1550042 462 46 627 61 SRX7891524 Unrestricted 17.67 Metagenome 3300048637 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from North Pacific Ocean - CTD-AT42-06-005-500m-0.65 DOE Joint Genome Institute (JGI) 3300048637 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 8.41285 -104.4194 1023716071 1569144 451 35 703 44 Unrestricted 28.0 Metagenome 3300000748 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 11AUG2009 epilimnion DOE Joint Genome Institute (JGI) 3300000748 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300027734 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027734 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 48.2311 -71.2508 655242511 1325924 262 47 476 81 SRX2996441 Unrestricted 0.0 Metagenome 3300025551 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025551 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.045666 -121.866516 148158426 320724 172 1 290 5 SRX7142152 Unrestricted 0.0 Metagenome 3300035564 *Microbiome Permanent Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-06-1_at_9-10_cm Genome Quebec 3300035564 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89673 -73.73461 736447837 1825913 715 9 1497 10 0.0 Metagenome 3300013366 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00386 Weill Cornell Medical College 3300013366 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.95 19210384 47433 21 2 40 3 SRX822357 0.0 Metagenome 3300002116 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2-10 DOE Joint Genome Institute (JGI) 3300002116 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 235290 873 29 0 53 0 SRX1990509 Unrestricted 0.0 Metagenome 3300028838 *Microbiome Permanent Draft Axial Seamount Reassemblies Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS917_Marker33_DNA IDBA_UD reassembly Marine Biological Laboratory 3300028838 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes jhuber@whoi.edu; randerson@carleton.edu; cfortunato@gmail.com; elks@mit.edu Julie Huber; Rika Anderson; Caroline Fortunato; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse vent fluid, hydrothermal vents 45.93316 -129.9822 446641352 1045323 1037 19 1659 36 0.0 Metagenome 3300070233 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dead Lake, Alabama, USA - DELA_041-M-20160824-COMP-DNA1 3300070233 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 23534362 72553 93 3 138 4 0.0 Metagenome 3300012243 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00713 Weill Cornell Medical College 3300012243 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.88 -73.9 30185952 39165 7 0 23 0 SRX822680 0.0 Metagenome 3300029633 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 001_6_7_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029633 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 95424955 115365 88 2 132 4 0.0 Metagenome 3300029378 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 091_4_27_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029378 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 254024651 382027 279 0 396 0 0.0 Metagenome 3300022893 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S126-311R-4 DOE Joint Genome Institute (JGI) 3300022893 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 179742451 486728 408 33 815 62 SRX4801281 Unrestricted 7.43 Metagenome 3300015302 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_20JUN2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015302 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 152903272 276804 14 28 12 37 SRX3923149 Unrestricted 10.2 Metagenome 3300071086 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Arizona, USA - SRER_002-M-20190806-COMP-DNA1 3300071086 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 2654476 8768 25 4 46 10 0.0 Metagenome 3300011801 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00776 Weill Cornell Medical College 3300011801 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.98 37679887 60153 26 0 37 0 SRX822742 0.0 Metagenome 3300001044 *Microbiome Permanent Draft Marine cyanobacterial communities from Panama, similar to Oscillatoria species Marine cyanobacterial communities from Panama - species 1 Leptolyngbya sp. v2 (version 3) DOE Joint Genome Institute (JGI) 3300001044 Metagenome Analysis released based on JGI ITS Yes Yes lgerwick@ucsd.edu Lena Gerwick No Environmental Aquatic Unclassified Marine Unclassified Marine 9.28 -79.97 34065382 103489 24 0 56 2 SRX8048359, SRX8048358 Unrestricted 0.0 Metagenome 3300047629 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA104b-BCH DOE Joint Genome Institute (JGI) 3300047629 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6792 -83.4776 673786395 1577514 395 35 723 63 Unrestricted 8.37 Metagenome 3300012304 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100433 University of Pennsylvania 3300012304 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 7709720 21560 15 0 19 1 SRX756565 0.0 Metagenome 3300013017 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in West Virginia, USA - MSEEL Well Study Marcellus 5H_2016_09_14 DOE Joint Genome Institute (JGI) 3300013017 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back deep subsurface 39.6018 -79.9761 35743880 68444 469 0 1000 1 SRX3021896 Unrestricted 238.59 Metagenome 3300014798 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS58_0 University of Hohenheim 3300014798 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 140606591 224470 74 1 158 0 0.0 Metagenome 3300021129 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 01OCT2007 epilimnion DOE Joint Genome Institute (JGI) 3300021129 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 178283049 215966 53 14 66 20 Unrestricted 0.0 Metagenome 3300045006 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_150m_2014 DOE Joint Genome Institute (JGI) 3300045006 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 1304159711 2213994 1049 8 1695 2 Unrestricted 12.83 Metagenome 3300002507 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Microcerotermes parvus P1 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Mp193P1 DOE Joint Genome Institute (JGI) 3300002507 Metagenome Analysis Yes Yes karen.rossmassler@gmail.com, brune@mpi-marburg.mpg.de Karen Rossmassler, Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut -4.7 11.83 1475972723 3703285 200 166 268 198 SRX2554837 Unrestricted 0.0 Metagenome 3300027410 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A4-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300027410 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 31302445 101087 114 3 184 6 SRX1990526 Unrestricted 0.0 Metagenome 3300031447 *Microbiome Permanent Draft Rock endolithic microbial communities from Victoria Land, Antarctica Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord DOE Joint Genome Institute (JGI) 3300031447 Metagenome Analysis spades v. 3.12.0 Yes Yes selbmann@unitus.it Laura Selbmann Yes 32139564 Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock -75.7 159.2 454452848 692861 108 16 117 23 SRX5225345 Unrestricted 71.13 Metagenome 7000000419 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 160643649 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000419 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2256700 2531 0 0 0 0 0.0 Metagenome 3300043404 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from McRae Creek, Blue River, Oregon, USA - mcraecreek_2019_sw_WHONDRS-S19S_0031 DOE Joint Genome Institute (JGI) 3300043404 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 44.2605 -122.1642 173499504 308795 316 113 573 176 Unrestricted 21.16 Metagenome 3300023219 *Microbiome Permanent Draft Microbial communities of deep seafloor calcareous sediment with volcaniclastic crumbs from southwestern Indian Ocean Marine sediment microbial communities from southwestern Indian Ocean - DY125-40IV-SWIR-S017-TVG10 Third Institute of Oceanography, State Oceanic Administration 3300023219 Metagenome Analysis idba v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Sediment Marine Unclassified sediment -35.93333 52.98333 1758559544 2898095 183 13 366 27 0.0 Metagenome 3300039332 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 626_B Beijing Genomics Institute (BGI) 3300039332 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 23148027 21886 9 0 15 0 ERX491281 0.0 Metagenome 3300004126 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300004126 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 634097312 1855174 446 75 825 217 Unrestricted 0.0 Metagenome 3300037214 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 711 E-3-S DOE Joint Genome Institute (JGI) 3300037214 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0467 684627665 1622452 635 13 1129 18 SRX8146816 Unrestricted 6.55 Metagenome 3300009658 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNTR2_MetaG DOE Joint Genome Institute (JGI) 3300009658 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 34.65 135.05 642318683 1153266 660 0 1056 1 SRX2338995 Unrestricted 0.0 Metagenome 3300011669 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01014 Weill Cornell Medical College 3300011669 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.58 -73.81 31557603 48337 16 0 22 0 SRX822976 0.0 Metagenome 3300011136 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01342 Weill Cornell Medical College 3300011136 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.84 -73.83 30089737 46940 18 0 35 0 SRX823282 0.0 Metagenome 3300038560 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P13_D2 DOE Joint Genome Institute (JGI) 3300038560 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 1156813736 1757386 306 39 486 55 SRX9404337 Unrestricted 12.52 Metagenome 3300043062 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8WT15 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043062 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 8294654 25841 37 4 49 5 SRX8379806 Unrestricted 36.33 Metagenome 3300069421 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_027-M-20170711-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069421 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 25344685 79251 62 12 142 24 0.0 Metagenome 3300042466 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Jun2016-rr0169 DOE Joint Genome Institute (JGI) 3300042466 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 683180183 1018339 248 31 318 39 Unrestricted 17.02 Metagenome 3300029779 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 048_3_11_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029779 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 205682918 292537 273 0 385 1 0.0 Metagenome 3300049015 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - J4_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049015 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 480898038 874267 311 27 504 42 Unrestricted 0.0 Metagenome 3300011687 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00523 Weill Cornell Medical College 3300011687 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.98 10578973 19002 8 0 12 0 SRX822492 0.0 Metagenome 3300011408 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT723_2 DOE Joint Genome Institute (JGI) 3300011408 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9777 -107.0027 203641138 493563 435 14 836 25 SRX3539421 Unrestricted 0.0 Metagenome 3300041050 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - T4D2 IDBA-UD 100x Baseclear 3300041050 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 92977854 134708 126 3 225 5 0.0 Metagenome 3300055502 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.1C.13 SIP fraction DOE Joint Genome Institute (JGI) 3300055502 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 175075688 273887 114 9 145 17 Unrestricted 32.69 Metagenome 7000000605 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763961826 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000605 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 110148761 203222 0 0 0 0 0.0 Metagenome 3300037141 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 P3 60-64 DOE Joint Genome Institute (JGI) 3300037141 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0466 962085232 1826369 314 5 530 8 SRX9169462 Unrestricted 10.84 Metagenome 3300025711 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025711 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 491936270 1002376 428 28 786 49 SRX3203369 Unrestricted 0.0 Metagenome 3300064781 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 586 in LaCrete, Alberta, Canada - S00JY_0539 Microbiome Insights 3300064781 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 58.01130917 -116.1709417 654891810 897286 189 5 267 5 0.0 Metagenome 3300035380 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_3c_15_8 mgh University of Alberta 3300035380 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified wastewater 56.7292 -111.3885 39873032 53343 25 0 38 0 0.0 Metagenome 3300003652 *Microbiome Permanent Draft Nitrogen contaminated groundwater microbial communities from Cape Cod, Massachusetts, USA Nitrogen contaminated groundwater microbial communities from Cape Cod, Massachusetts, USA - NO3 Zone 3300003652 Metagenome Analysis Unknown released by JGI data releasing policy No Yes cbuckner@mpi-bremen.de Caroline Buckner No Environmental Aquatic Groundwater Freshwater Contaminated Nitrogen contaminated groundwater 41.765 -70.3627 0 0 0 0 0 0 0.0 Metagenome 3300000349 *Microbiome Permanent Draft Turbot gut microbial communities from Qingdao, China Turbot gut microbe from Qingdao, China Chinese Academy of Sciences 3300000349 Metagenome Analysis released per JGI data release policy No Yes sxxxmx@126.com Xing Mengxin, Mengxin Xing No Host-associated Fish Unclassified Digestive system Unclassified Turbot gut 35.873472 120.044632 18747001 59796 8 3 21 5 0.0 Metagenome 3300054113 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 soil DOE Joint Genome Institute (JGI) 3300054113 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.588067 -123.193099 6.7 510488045 967575 101 2 153 2 Unrestricted 22.35 Metagenome 3300010275 *Microbiome Permanent Draft Animal gut microbial communities from fecal samples from Wisconsin, USA Western lowland gorrila individual fecal microbial communities from Wisconsin, USA - Go1022A metagenome DOE Joint Genome Institute (JGI) 3300010275 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes apneumann2@wisc.edu Anthony Neumann No Host-associated Mammals Large intestine Digestive system Fecal Western lowland gorilla individual fecal 43.78 -88.79 276642441 411397 718 0 1122 0 SRX2505952 Unrestricted 0.0 Metagenome 3300026109 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_405 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026109 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 150495484 354092 191 2 330 9 SRX2564570, SRX2581036 Unrestricted 0.0 Metagenome 3300049068 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - A10_A_BS (version 2) DOE Joint Genome Institute (JGI) 3300049068 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 229732644 513057 448 12 1001 40 Unrestricted 0.0 Metagenome 3300040385 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 060B_R1 University of Maryland 3300040385 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.96534167 25.69966667 5704894 7329 11 0 9 0 0.0 Metagenome 3300043402 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Red Butte Creek, Salt Lake City, Utah, USA - redbuttecreek_2019_sw_WHONDRS-S19S_0029 DOE Joint Genome Institute (JGI) 3300043402 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 40.7846 -111.7954 324134036 551297 417 74 610 123 Unrestricted 20.8 Metagenome 3300069241 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from National Grasslands LBJ, Texas, USA - CLBJ_038-M-20210504-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069241 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Grasslands Soil Unclassified Terrestrial soil 33.41426 -97.5971 2542924798 6474566 1743 40 3339 89 0.0 Metagenome 3300042006 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 DOE Joint Genome Institute (JGI) 3300042006 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.8942 -103.685 497690521 1134085 476 58 853 113 SRX14827033 Unrestricted 13.09 Metagenome 3300060300 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.20W.12 SIP fraction DOE Joint Genome Institute (JGI) 3300060300 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 466465000 895683 263 122 437 186 Unrestricted 0.0 Metagenome 3300039334 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 26_4M Beijing Genomics Institute (BGI) 3300039334 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 23324741 28267 16 0 22 0 ERX491040 0.0 Metagenome 3300026898 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 79 (SPAdes) DOE Joint Genome Institute (JGI) 3300026898 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 65703777 161526 98 0 168 2 SRX4341379 Unrestricted 0.0 Metagenome 3300005507 *Microbiome Permanent Draft Arabidopsis rhizosphere microbial communities from the University of North Carolina Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Mutant cpr5 v2 (version 2) DOE Joint Genome Institute (JGI) 3300005507 Metagenome Analysis Newbler and/or Velvet released based on JGI ITS Yes Yes sgtringe@lbl.gov, sgtringe@lbl.gov; dangl@email.unc.edu Susannah Tringe, Susannah Tringe; Jeff Dangl Yes 22859206 Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9 -79.05 595578765 2334161 406 34 985 113 Unrestricted 0.0 Metagenome 3300031691 *Microbiome Permanent Draft Rhizosphere microbial communities from salt marsh grasses in Alabama, United States Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA DOE Joint Genome Institute (JGI) 3300031691 Metagenome Analysis spades v. 3.12.0 Yes Yes omason@fsu.edu Olivia Mason No Host-associated Plants Rhizosphere Roots Unclassified rhizosphere 30.2619 -88.2383 1250976252 2886925 1036 8 1929 20 SRX5821836 Unrestricted 7.52 Metagenome 3300054677 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_106-s41 day 28 DOE Joint Genome Institute (JGI) 3300054677 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 615632283 788810 76 75 104 73 Unrestricted 43.31 Metagenome 3300046697 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 S3 50-54 DOE Joint Genome Institute (JGI) 3300046697 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.353292 19.0475 507427630 664498 123 0 138 2 Restricted 27.06 Metagenome 2009439000 *Microbiome Draft Hot spring microbial communities from Bison Spring, Yellowstone National Park, USA, analyzing thermal gradients 2_050719S DOE Joint Genome Institute (JGI) 2009439000 Metagenome Analysis lucy / pga No Yes eshock@asu.edu Everett Shock No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.5696298 -110.8651817 31802272 51132 30 0 54 0 Unrestricted 0.0 Metagenome 3300049669 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought DOE Joint Genome Institute (JGI) 3300049669 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 386320825 880927 522 33 1050 47 Unrestricted 12.41 Metagenome 3300043064 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - HN_080817 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043064 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.9002 -89.3556 9928609 30223 66 12 87 18 SRX9381644 Unrestricted 26.77 Metagenome 3300049136 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S17_A_D45 hydrophilic DOE Joint Genome Institute (JGI) 3300049136 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 424571461 672304 302 0 346 0 Unrestricted 42.61 Metagenome 3300031227 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #232 DOE Joint Genome Institute (JGI) 3300031227 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 1050144399 2440498 500 1 788 5 SRX5329013 Unrestricted 15.84 Metagenome 3300043323 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-356 Genome Quebec 3300043323 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.217733 -105.851938 1275531813 2893981 512 55 904 107 0.0 Metagenome 3300037212 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 711 E-2-M DOE Joint Genome Institute (JGI) 3300037212 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0465 701696182 1536677 459 11 777 21 SRX8146675 Unrestricted 7.93 Metagenome 3300064913 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 727 in Wetaskiwin, Alberta, Canada - S00JY_0064 Microbiome Insights 3300064913 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.53069413 -113.1733318 62667948 94005 35 2 73 3 0.0 Metagenome 3300025983 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Tolay_CordC_D2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025983 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.15012 -122.438774 145181152 315153 171 0 312 0 SRX7144824 Unrestricted 0.0 Metagenome 3300055504 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.1C.8 SIP fraction DOE Joint Genome Institute (JGI) 3300055504 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 250823611 455809 149 1 238 11 Unrestricted 17.88 Metagenome 3300042843 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153 NMDC pilot DOE Joint Genome Institute (JGI) 3300042843 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92057636 -106.94874802 1829522020 4259264 781 23 1409 26 SRX5354695 0.0 Metagenome 3300049687 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_A_4_drought DOE Joint Genome Institute (JGI) 3300049687 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 118808224 269175 254 17 508 21 Unrestricted 11.09 Metagenome 2015219000 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP19 Cistern Spring v1 DOE Joint Genome Institute (JGI) 2015219000 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23720654 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.7230812 -110.7040247 4.4 17628346 26749 3 0 3 0 Unrestricted 0.0 Metagenome 3300029888 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36019 Beijing Genomics Institute (BGI) 3300029888 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 96936367 114814 84 0 151 0 0.0 Metagenome 3300011948 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00384 Weill Cornell Medical College 3300011948 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.97 36087604 52092 14 1 13 0 SRX822355 0.0 Metagenome 3300040666 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Desert Southwest, AZ, USA - SRER_053-M-20170815-COMP-DNA1 Battelle Memorial Institute 3300040666 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.91068 -110.83549 1366892 4177 14 1 34 2 0.0 Metagenome 3300000588 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 08JUN2009 epilimnion DOE Joint Genome Institute (JGI) 3300000588 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300041921 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Effluent pond microbial community from a dairy farm Lincoln, Canterbury, New Zealand - EFF17_1 MetaG AgResearch, New Zealand, Mosgeil 3300041921 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Engineered Wastewater Agricultural wastewater Industrial wastewater Unclassified Effluent pond -43.648506 172.343549 304113285 578167 107 22 332 41 0.0 Metagenome 3300036927 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8NP15 DOE Joint Genome Institute (JGI) 3300036927 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 568704937 1297373 467 5 797 9 SRX8379639 Unrestricted 7.2 Metagenome 3300009059 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703 DOE Joint Genome Institute (JGI) 3300009059 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 378512297 749856 274 20 454 33 SRX2753580 Unrestricted 0.0 Metagenome 3300003654 *Microbiome Permanent Draft Subglacial freshwater microbial communities from Lake Whillans, Antarctica Subglacial freshwater microbial communities from Lake Whillans, Antarctica - 0.8 micron filter 3300003654 Metagenome Analysis released by JGI data releasing policy No Yes xner@lsu.edu Brent Christner No Environmental Aquatic Subglacial lake Deep subsurface Unclassified Subglacial freshwater -84.24 -153.694 28501416 42537 18 0 30 0 0.0 Metagenome 3300007804 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 159814214 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007804 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 100761432 131805 90 0 157 0 0.0 Metagenome 3300006262 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 246515023 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006262 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 148838662 226423 108 0 126 1 0.0 Metagenome 3300009105 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 900m, 2.7-0.2um, replicate a Georgia Genomics Facility 3300009105 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 546222175 656545 347 0 449 0 0.0 Metagenome 3300008708 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763577454 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008708 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 13595914 25904 17 0 28 0 0.0 Metagenome 3300024354 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepB_8d DOE Joint Genome Institute (JGI) 3300024354 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 192091476 414434 216 14 297 16 SRX4547354 Unrestricted 11.45 Metagenome 3300039827 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Temperate deciduous broadleaf forest soil microbial communities from Baltimore, USA - 001_R1 University of Maryland 3300039827 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate deciduous broadleaf forest soil 39.3346333 -76.60935 30240795 76231 100 5 190 5 0.0 Metagenome 3300026988 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 5 (SPAdes) DOE Joint Genome Institute (JGI) 3300026988 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 101927473 204570 130 3 245 6 SRX4338206 Unrestricted 0.0 Metagenome 2209111007 *Microbiome Permanent Draft Speleothem and rock wall surfaces microbial communities from Kartchner Caverns, Benson, Arizona, USA Cave microbial community (Dry rock wall) Arizona Genomics Institute 2209111007 Metagenome Analysis Newbler released per JGI data release policy No Yes moo@email.arizona.edu Marian Ortiz No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Speleothem and rock wall surfaces 39.0042816 -77.1012173 195239798 555572 136 0 323 0 0.0 Metagenome 3300026491 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 52D DOE Joint Genome Institute (JGI) 3300026491 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 243651107 499430 173 21 253 22 SRX4465451 Unrestricted 15.65 Metagenome 3300017961 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG DOE Joint Genome Institute (JGI) 3300017961 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 3.8381 -73.3194 2078428209 4481758 1481 6 2660 24 SRX3936921 Unrestricted 5.48 Metagenome 3300061841 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA - Treefall.Mar18 metaG DOE Joint Genome Institute (JGI) 3300061841 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.5322 -110.7965 8-9 154692907 324351 144 0 229 0 Unrestricted 82.9 Metagenome 3300056812 *Microbiome Permanent Draft Soil biocrust microbial and viral communities from model ecosystem in Berkeley Lab, California, USA Soil biocrust microbial communities from model ecosystem in Berkeley Lab, California, USA - Berg_moab_pooled_LR (version 3) DOE Joint Genome Institute (JGI) 3300056812 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes sroux@lbl.gov Simon Roux No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil biocrust 37.87739 -122.250939 162518362 184565 98 5 100 8 Restricted 24.34 Metagenome 3300032231 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Coastal sediment microbial communities from Maine, United States - Cross River worm burrow 1 DOE Joint Genome Institute (JGI) 3300032231 Metagenome Analysis spades v. 3.13.0 Yes Yes jbeam@bigelow.org; demerson@bigelow.org Jake Beam; David Emerson No Environmental Aquatic Coastal Marine Sediment worm burrow 43.917 -69.6219 2914167137 6610121 1753 62 3106 99 SRX5822351 Unrestricted 8.5 Metagenome 7000000393 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765337473 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000393 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 117961358 200938 0 0 0 0 0.0 Metagenome 3300033445 *Microbiome Permanent Draft Meromitic Lake A Freshwater microbial communities from meromitic lake A, Ellesmere Island, Canada - Sample 65m re-analysis2 Laval University 3300033445 Metagenome Analysis Megahit v. 1.0.5 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 82.99445 -75.443367 1582807107 3989343 1157 2 1889 9 0.0 Metagenome 3300002035 *Microbiome Permanent Draft Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease - 2012_LB_B2 3300002035 Metagenome Analysis IDBA-UD + SOAPdenovo + GAA made public per user request (Enrique Zozaya - 05/02/16 email) No Yes t.thomas@unsw.edu.au Torsten Thomas Yes 28419766 Host-associated Algae Ectosymbionts Red algae Unclassified Delisea pulchra -33.57 151.15 568844424 2020037 157 40 438 81 0.0 Metagenome 3300000171 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 200m DOE Joint Genome Institute (JGI) 3300000171 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 100249855 200932 64 0 167 1 Unrestricted 0.0 Metagenome 3300035562 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Eucalyptus forests in New South Wales, Australia - Eu_9 DOE Joint Genome Institute (JGI) 3300035562 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Tropical forest Soil Bulk soil soil -34.5 150.0 955489522 2256822 539 107 916 172 SRX8383907 Unrestricted 32.7 Metagenome 3300043640 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 248-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043640 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9606 -107.0319 1135336106 2498006 675 61 1098 91 Unrestricted 7.62 Metagenome 3300001962 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Cocos Island, Costa Rica - GS023 J. Craig Venter Institute (JCVI) 3300001962 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Oceanic Marine Unclassified Marine 5.64 -86.56528 93108667 176476 97 1 142 2 0.0 Metagenome 3300005116 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F02 DOE Joint Genome Institute (JGI) 3300005116 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 56536934 80780 112 0 161 0 SRX3195089 Unrestricted 0.0 Metagenome 3300012423 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100647 University of Pennsylvania 3300012423 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3226616 9479 7 0 14 0 SRX756447 0.0 Metagenome 3300027732 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027732 Metagenome Analysis spades v. 3.11.1 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 641560752 1334990 230 14 320 17 SRX2565028 Unrestricted 0.0 Metagenome 7000000158 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 764062976 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000158 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 153834685 256936 0 0 0 0 0.0 Metagenome 3300012302 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100321 University of Pennsylvania 3300012302 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12067599 19607 9 2 18 3 SRX756336 0.0 Metagenome 3300042937 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Nov2014-rr0377 DOE Joint Genome Institute (JGI) 3300042937 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 965016389 1422960 321 120 430 136 Unrestricted 20.2 Metagenome 3300025893 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025893 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 1185798876 2912162 851 33 1570 62 SRX2740384 Unrestricted 0.0 Metagenome 3300013685 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00448 Weill Cornell Medical College 3300013685 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -73.78 18039300 24806 10 0 11 0 SRX822417 0.0 Metagenome 3300029481 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001806-13 Beijing Genomics Institute (BGI) 3300029481 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 170724719 225085 125 0 198 0 0.0 Metagenome 3300029998 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N1_1 DOE Joint Genome Institute (JGI) 3300029998 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 1336005394 3012242 1292 197 2096 324 SRX5356682 Unrestricted 12.02 Metagenome 3300033506 *Microbiome Permanent Draft Sinkhole microbial mat communities from Lake Huron, Michigan, USA Sinkhole microbial mat communities from Lake Huron, Michigan, USA - SG0100 University of Michigan 3300033506 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy Yes Yes sgrim01@gmail.com Sharon Grim No Environmental Aquatic Sinkhole Freshwater Unclassified microbial mat 45.19843 -83.32721 44963068 52086 20 8 28 10 0.0 Metagenome 3300015304 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_NF_09MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015304 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 154299900 279904 6 17 7 10 SRX3922231 Unrestricted 10.57 Metagenome 3300021288 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen5, Rep 3, Penicillin and Streptomycin DOE Joint Genome Institute (JGI) 3300021288 Metagenome Analysis spades v. 3.11.1-check Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4149 -119.841 121759160 145142 25 15 32 22 SRX4038260 Unrestricted 173.55 Metagenome 3300001042 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN593 DOE Joint Genome Institute (JGI) 3300001042 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.070856 -96.582821 162145 553 26 0 36 2 SRX1986976 Unrestricted 0.0 Metagenome 3300035688 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL18G_12-B DOE Joint Genome Institute (JGI) 3300035688 Metagenome Analysis metaspades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5106 -110.3566 2254626201 4220485 1185 6 1911 4 SRX8280923 Unrestricted 17.66 Metagenome 7000000634 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human throat microbial communities from NIH, USA - visit 2, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000634 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human 6711950 9772 0 0 0 0 SRX024956 0.0 Metagenome 3300008000 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Jinze hot spring, China to study Microbial Dark Matter (Phase II) - JNZ 20120812A DOE Joint Genome Institute (JGI) 3300008000 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes brian.hedlund@unlv.edu, brian.hedlund@unlv.edu; rstepanauskas@bigelow.org Brian P. Hedlund, Brian Hedlund; Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring 25.4413 98.46 6.65 235708933 492041 251 0 377 4 SRX2753919 Unrestricted 0.0 Metagenome 3300041046 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - T3D8 IDBA-UD 60x Baseclear 3300041046 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 148168745 204462 124 8 232 10 0.0 Metagenome 3300032316 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 17-060 Genome Quebec 3300032316 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.600521 -67.820387 797658559 1558394 413 108 729 243 0.0 Metagenome 3300044503 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - SF99_A200L DOE Joint Genome Institute (JGI) 3300044503 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.1606 -62.7967 724851740 1921950 327 5 698 7 Unrestricted 9.01 Metagenome 3300026382 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in the Atlantic and Pacific Ocean Hydrothermal vent microbial communities from Guaymas Basin, Mexico - 4561-380 DOE Joint Genome Institute (JGI) 3300026382 Metagenome Analysis spades v. 3.11.1 Yes Yes pgirguis@oeb.harvard.edu Peter Girguis No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent 27.0078 -111.4071 150696482 273636 198 2 261 6 SRX4801602 Unrestricted 101.36 Metagenome 3300050716 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water viral communities from Sandhills, Nebraska, United States - NSL_Bean_2019_V DOE Joint Genome Institute (JGI) 3300050716 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.7748 -102.5295 396375166 1052189 38 2 70 7 Unrestricted 85.62 Metagenome 3300038491 *Microbiome Permanent Draft Marine microbial communities from North Atlantic, Canada Marine microbial communities from North Atlantic, Canada - TB20GW National Research Council, Canada Plant Biotechnology Institute 3300038491 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 47.0 -48.471 31915217 67489 37 1 77 5 0.0 Metagenome 3300045112 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - C2-8-23-19 DOE Joint Genome Institute (JGI) 3300045112 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.3125 -120.4147 421225252 1188020 525 24 953 49 Restricted 6.73 Metagenome 3300018009 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40 DOE Joint Genome Institute (JGI) 3300018009 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 833613895 1572496 501 27 824 60 SRX3960601 Unrestricted 17.83 Metagenome 3300038988 *Microbiome Permanent Draft Metagenomes from Anaerobic Digestors at Pulp and Paper Mills Anaerobic digester sludge microbial community from a pulp and paper mill in Quebec, Canada - TemR1170802 MSP Genome Quebec, University of Toronto 3300038988 Metagenome Analysis spades v. 3.12.0 Yes Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Engineered Bioreactor Unclassified Anaerobic Unclassified anaerobic sludge 48.8062 -79.2314 302853872 354918 79 1 144 0 0.0 Metagenome 3300046823 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 soil DOE Joint Genome Institute (JGI) 3300046823 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.12116 -123.270413 5.05 1067819620 1747754 303 15 523 29 Unrestricted 13.72 Metagenome 3300040297 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA FertPrarie soil microbial communities from Boone County, Iowa, USA - PF32-LM-July2012 Iowa State University 3300040297 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land FertPrarie soil 42.01375 -93.783837 6057727 19107 78 2 175 6 0.0 Metagenome 3300042114 *Microbiome Permanent Draft Sediment microbial communities from sulfidic stream in Frasassi Caves, Marche, Italy Biofilm microbial communities from sulfidic stream in Frasassi Caves, Marche, Italy - PC19_107 DOE Joint Genome Institute (JGI) 3300042114 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes heidiaronson@berkeley.edu Heidi Aronson No Environmental Terrestrial Cave Deep subsurface Wall biofilm Biofilm 43.4012 12.9656 837839086 1789161 675 12 1088 13 Unrestricted 14.43 Metagenome 3300032067 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22 DOE Joint Genome Institute (JGI) 3300032067 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1570936807 3862338 447 34 845 66 SRX5818307 Unrestricted 11.33 Metagenome 3300029392 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 094_4_28_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029392 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 203545164 269309 226 0 274 0 0.0 Metagenome 3300041803 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - TR_32_wk_3 DOE Joint Genome Institute (JGI) 3300041803 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9707 -107.059 193097957 544800 279 36 502 46 SRX14808475 Unrestricted 7.43 Metagenome 3300029974 *Microbiome Permanent Draft Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil - Edson_C1 Reanalysis Center for Advanced Technologies in Genomics, Sao Paulo University 3300029974 Metagenome Analysis metaSPAdes v. 3.12.0 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 23020868 47011 54 1 98 3 0.0 Metagenome 3300042241 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D278_2 DOE Joint Genome Institute (JGI) 3300042241 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 159283630 227201 125 6 181 11 Unrestricted 69.94 Metagenome 3300034190 *Microbiome Finished Marine viral communities of the coast of Yellow Sea, Qingdao, China Marine viral communities of the coast of Yellow Sea, Qingdao, China - ws Ocean University of China 3300034190 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes 1054738805@qq.com Chengxiang Gu No Environmental Aquatic Unclassified Marine Unclassified marine 36.062 120.38 292881555 545098 74 2 113 4 0.0 Metagenome 3300043435 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27May2015-rr0294 DOE Joint Genome Institute (JGI) 3300043435 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 848284085 1272604 244 43 314 35 Unrestricted 19.31 Metagenome 3300000723 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 72 DOE Joint Genome Institute (JGI) 3300000723 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 18003684 52532 53 0 96 1 SRX4341349 Unrestricted 0.0 Metagenome 3300059719 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1560A-02 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059719 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2638 -123.4649 213634081 461008 166 13 247 34 SRX2753754 Unrestricted 0.0 Metagenome 3300012908 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1 DOE Joint Genome Institute (JGI) 3300012908 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 719286005 1798382 756 31 1465 59 SRX3297222 Unrestricted 4.26 Metagenome 3300021483 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-4-5_MG DOE Joint Genome Institute (JGI) 3300021483 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.0114 -110.5956 99749804 214654 128 0 190 1 Unrestricted 21.92 Metagenome 3300001315 *Microbiome Permanent Draft Bioengineered switchgrass rhizosphere microbial community from Knoxville, Tennessee, USA Bioengineered switchgrass rhizosphere microbial community from Knoxville, Tennessee, USA - 15-3 3300001315 Metagenome Analysis released by JGI data releasing policy No Yes jliu36@utk.edu Jiang Liu No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 35.98 -83.92 3332986 12332 13 1 27 2 0.0 Metagenome 3300032089 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23 DOE Joint Genome Institute (JGI) 3300032089 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1418338186 3380658 384 23 623 32 SRX5818409 Unrestricted 12.01 Metagenome 3300030488 *Microbiome Permanent Draft Simulated microbial communities from bacterial mixture, Uppsala, Sweden Simulated microbial communities from bacterial mixture, Uppsala, Sweden - Unamplified Uppsala University 3300030488 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Simulated 59.8509005 17.6300093 12750945 14994 5 0 5 0 0.0 Metagenome 3300001368 *Microbiome Permanent Draft Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA - Biofuel metagenome 4 DOE Joint Genome Institute (JGI) 3300001368 Metagenome Analysis Yes Yes hrbeller@lbl.gov Harry Beller Yes 27506494, 29556105 Engineered Bioreactor Unclassified Anaerobic Unclassified Bioreactor 37.8754404 -122.2477251 210438320 443928 188 2 301 4 SRX1671042, SRX1671041, SRX1671040, SRX1671039, SRX1671038, SRX1671037 0.0 Metagenome 3300045421 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_40m_2014 DOE Joint Genome Institute (JGI) 3300045421 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 317527397 608842 190 14 322 32 Unrestricted 30.34 Metagenome 3300012228 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT700_2 DOE Joint Genome Institute (JGI) 3300012228 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9775 -107.0029 417196901 897677 374 43 771 68 SRX3539426 Unrestricted 0.0 Metagenome 3300014265 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D2 DOE Joint Genome Institute (JGI) 3300014265 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.052479 -121.7687 301303268 729012 335 4 700 2 SRX7181934 Unrestricted 0.0 Metagenome 2222084001 *Microbiome Finished Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - Dispersant Alabama State University 2222084001 Metagenome Analysis GS de Novo Assembly released per JGI data release policy No Yes panoble@washington.edu Peter A Noble No Environmental Aquatic Intertidal zone Marine Oil-contaminated Marine 30.15 -88.446 7.8 43745562 125596 61 0 167 0 0.0 Metagenome 3300015189 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb2a, glacial moraine) University of Bristol 3300015189 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.906846 18.44555 7.3 231705319 461631 178 14 292 18 0.0 Metagenome 3300027093 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF021 (SPAdes) DOE Joint Genome Institute (JGI) 3300027093 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 25356525 75372 59 18 90 43 SRX2014322 Unrestricted 0.0 Metagenome 3300013752 *Microbiome Permanent Draft Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 288 Chalmers University of Technology 3300013752 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 157450474 327120 130 0 245 1 SRX193540 0.0 Metagenome 3300003138 *Microbiome Permanent Draft Sediment microbial communities from subsurface aquifer at Rifle, CO Sediment microbial communities from subsurface aquifer at Rifle, CO - flow-through sediment column University of California, Berkeley 3300003138 Metagenome Analysis Velvet v. Jul-2011 Made public because these are downloaded from Genbank No Yes jbanfield@berkeley.edu Jill Banfield Yes 23190730, 23979677, 24450983, 26033198 Environmental Aquatic Lotic Freshwater Unclassified Sediment 39.529053 -107.772406 32714692 55879 41 1 67 0 SRX329136, SRX149542 0.0 Metagenome 3300037794 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Freshwater microbial communities from Lake Michigan, Michigan, United States - MI_BH16_G01 metaG DOE Joint Genome Institute (JGI) 3300037794 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 42.7333 -87.0 379473645 788115 162 9 251 13 SRX9146672 Unrestricted 16.85 Metagenome 3300027705 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB19-Kit (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027705 Metagenome Analysis spades v. 3.11.1 Yes Yes wagner@microbial-ecology.net Michael Wagner Yes 28386012 Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 599735164 1220679 452 23 726 24 SRX2838875 Unrestricted 0.0 Metagenome 3300070345 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_070-M-20190826-COMP-DNA1 3300070345 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 3317201 11018 32 3 53 10 0.0 Metagenome 3300043589 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 103-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043589 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9273 -106.9729 215883305 575518 271 9 562 23 Unrestricted 8.71 Metagenome 3300005180 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_05_30cm DOE Joint Genome Institute (JGI) 3300005180 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2735172826 7453039 2294 25 4134 76 SRX2521038 Unrestricted 0.0 Metagenome 3300055007 *Microbiome Permanent Draft Soil biocrust microbial and viral communities from model ecosystem in Berkeley Lab, California, USA Soil biocrust microbial communities from model ecosystem in Berkeley Lab, California, USA - 4hr_B DOE Joint Genome Institute (JGI) 3300055007 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sroux@lbl.gov Simon Roux No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil biocrust 37.87739 -122.250939 1660549395 2693311 715 15 1060 21 Restricted 27.08 Metagenome 3300012335 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100308 University of Pennsylvania 3300012335 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 20540674 46966 15 0 27 0 SRX756593 0.0 Metagenome 3300001787 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR11Jul_8A2 DOE Joint Genome Institute (JGI) 3300001787 Metagenome Analysis Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 39055228 73560 39 0 68 0 SRX3318648 Unrestricted 0.0 Metagenome 3300014772 *Microbiome Permanent Draft Wastewater microbial communities from medical facility sewage samples near Freiburg, Germany Wastewater microbial communities from medical facility sewage samples near Freiburg, Germany - C1751 University of Freiburg 3300014772 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 48.0 8.0 65151822 158996 86 2 187 4 0.0 Metagenome 3300050556 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_RHK2_2_to_RHK2 DOE Joint Genome Institute (JGI) 3300050556 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.153 -124.211 248574882 487322 109 67 180 113 Unrestricted 23.46 Metagenome 3300020427 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B000000460 (ERX555922-ERR598960) CEA Genoscope 3300020427 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -35.2792 26.382 1042017357 2757125 742 80 1388 148 0.0 Metagenome 3300000662 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 2 DOE Joint Genome Institute (JGI) 3300000662 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 1723206 6120 24 3 41 3 SRX4338202 Unrestricted 0.0 Metagenome 3300070270 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Alaska, USA - DEJU_001-M-20180619-COMP-DNA1 3300070270 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 5391834 17604 52 8 87 17 0.0 Metagenome 3300026874 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and P2 (4) (SPAdes) DOE Joint Genome Institute (JGI) 3300026874 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 93976099 140977 46 0 72 0 SRX3311630 Unrestricted 0.0 Metagenome 3300014218 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 202_L4_2014-5-23 San Diego State University 3300014218 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 118430 328 10 3 17 11 0.0 Metagenome 3300037070 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil viral communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 22_7.5_V_1 DOE Joint Genome Institute (JGI) 3300037070 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1863 -2.2145 526222991 1305737 3 1 9 0 SRX8234410 Unrestricted 22.98 Metagenome 3300049923 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Colorado, USA - weststlouiscreek_2019_sed_WHONDRS-S19S_0027 DOE Joint Genome Institute (JGI) 3300049923 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 39.89064 -105.91125 678746017 1474680 547 6 1020 11 Restricted 10.71 Metagenome 3300001769 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from the Cayman Rise, Cayman Islands Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Shallow Background Supr60 3300001769 Metagenome Analysis IDBA_UD k52-k92 step10 released by JGI data releasing policy No Yes Gregory Dick, Sunit Jain No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 18.35 -81.85 109162239 160573 102 4 189 8 0.0 Metagenome 3300019758 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - BB_2_MG DOE Joint Genome Institute (JGI) 3300019758 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Microbial mats Freshwater microbial mat 38.7906 -75.1644 288452110 549545 582 6 938 9 SRX3982505 Unrestricted 7.87 Metagenome 3300043567 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Oct2014-rr0299 DOE Joint Genome Institute (JGI) 3300043567 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 757399950 1143212 310 80 428 117 Unrestricted 18.24 Metagenome 3300027939 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_1-July-14 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027939 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 55960900 160389 133 52 253 69 SRX2838890 Unrestricted 0.0 Metagenome 3300059365 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.3C.12 SIP fraction DOE Joint Genome Institute (JGI) 3300059365 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 162147840 265197 144 41 236 56 Unrestricted 17.26 Metagenome 3300025627 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample F53-1 deep-092012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025627 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 350362487 700375 198 17 308 37 SRX1987692 Unrestricted 0.0 Metagenome 3300005462 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_1000m University of Hawaii 3300005462 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Aphotic zone Marine 22.75 -158.0 979766 1845 12 1 21 3 0.0 Metagenome 3300045828 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_3_A DOE Joint Genome Institute (JGI) 3300045828 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 151832062 178437 93 1 118 2 Unrestricted 174.03 Metagenome 3300039146 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Natural salt marsh sediment microbial communities from Fingringhoe Range, United Kingdom - W FRNM 3A University of York 3300039146 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Natural salt marsh sediment 51.831817 0.9687 38512729 98400 64 0 117 0 0.0 Metagenome 3300002464 *Microbiome Permanent Draft Anopheles gambiae gut viral communities from New Mexico State University, USA Anopheles gambiae gut viral communities from New Mexico State University, USA - SM1 3300002464 Metagenome Analysis released by JGI data releasing policy No Yes dpei@nmsu.edu Dong Pei No Host-associated Arthropoda: Insects Hindgut Digestive system Paunch/P3 segment Anopheles gambiae gut 32.3144 -106.7789 44162378 56843 7 1 12 1 0.0 Metagenome 3300017926 *Microbiome Permanent Draft Coastal wetland sediment microbial communities from the Mid-Atlantic and Southeast Atlantic Coast of USA, responding to salinity intrusion. Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2 DOE Joint Genome Institute (JGI) 3300017926 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Freshwater sediment 35.9061 -76.1569 530969770 1161540 323 28 572 36 SRX4367169 Unrestricted 5.44 Metagenome 3300011760 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway plastic -P01391 Weill Cornell Medical College 3300011760 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Plastic surface city subway plastic 40.62 -73.98 34639094 55474 15 0 14 0 SRX823331 0.0 Metagenome 3300011342 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100207 University of Pennsylvania 3300011342 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 501019 1433 8 0 8 0 SRX756692 0.0 Metagenome 3300015167 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Storglaciaren, Tarfala, Sweden (Sample st-11b, vegetated hydrological feature) University of Bristol 3300015167 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.904687 18.610965 6.6 188269776 429028 186 15 351 28 0.0 Metagenome 3300051784 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water microbial communities from Sandhills, Nebraska, United States - NSL_Island_2019_MMG DOE Joint Genome Institute (JGI) 3300051784 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.7342 -102.4104 1662400304 2716630 558 40 747 60 Unrestricted 32.5 Metagenome 3300049203 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - D16_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049203 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 480243617 746323 322 17 575 28 Unrestricted 0.0 Metagenome 3300025291 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025291 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 264300494 434297 126 3 159 2 SRX2770676 Unrestricted 0.0 Metagenome 3300049344 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CDF2 DOE Joint Genome Institute (JGI) 3300049344 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 283762013 770417 342 10 695 15 Unrestricted 7.14 Metagenome 3300040052 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 048B_R1 University of Maryland 3300040052 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.99339722 25.707175 13440129 18446 10 1 17 1 0.0 Metagenome 3300003406 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_solids_2 DOE Joint Genome Institute (JGI) 3300003406 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 195281756 296253 167 42 240 63 SRX2770515 Unrestricted 0.0 Metagenome 3300002002 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot26-1 3300002002 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 2447580 13926 75 5 137 9 0.0 Metagenome 3300036354 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C1-9C DOE Joint Genome Institute (JGI) 3300036354 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 49050114 158672 149 3 230 5 SRX8816774 Unrestricted 4.14 Metagenome 3300045120 *Microbiome Permanent Draft Forest soil microbial communities from boreal-temperate forests in Minnesota, USA Forest soil microbial communities from Cloquet Forestry Center, Minnesota, USA - Cloquet AMB CO F2 DOE Joint Genome Institute (JGI) 3300045120 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pankaj.trivedi@colostate.edu Pankaj Trivedi No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 46.31 -92.3 995720518 1711725 401 22 694 35 Unrestricted 14.68 Metagenome 3300041727 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_491 MetaG AgResearch, New Zealand, Mosgeil 3300041727 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 2503202405 5317481 300 27 1358 56 0.0 Metagenome 3300023263 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S092-311B-6 DOE Joint Genome Institute (JGI) 3300023263 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 342990985 923752 598 22 1139 53 SRX4801450 Unrestricted 7.51 Metagenome 3300026361 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B DOE Joint Genome Institute (JGI) 3300026361 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 170256952 438359 230 13 426 21 SRX4803701 Unrestricted 10.42 Metagenome 3300017388 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Groundwater microbial communities from Devils Hole, Nevada to study Microbial Dark Matter (Phase II) - Devils Hole (SPADES assembly) (version 2) DOE Joint Genome Institute (JGI) 3300017388 Metagenome Analysis MEGAHIT v. 1.0.3 released Yes Yes rstepanauskas@bigelow.org; duane.moser@dri.edu Ramunas Stepanauskas; Duane Moser No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 36.43 -116.29 44994499 101715 70 15 121 17 SRX2948573 Unrestricted 0.0 Metagenome 3300022658 *Microbiome Permanent Draft Subsurface microbial diversity of groundwater of Koyna-Warna region, Deccan traps, Panchgani, Maharashtra, India Groundwater seepage microbial community from Koyna-Warna region, Deccan traps, Panchgani, Maharashtra, India - PBW all_kmer Indian Institute of Technology, kharagpur 3300022658 Metagenome Analysis Spades v. 3.10 released by JGI data releasing policy No Yes sarpinaki@gmail.com; sarpinaki@yahoo.com Dr PINAKI SAR; Pinaki Sar No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater seepage 17.304415 73.793353 356853870 524379 178 18 242 31 0.0 Metagenome 3300042857 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380 NMDC pilot DOE Joint Genome Institute (JGI) 3300042857 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92048757 -106.94878552 700209602 1821389 633 43 1166 65 SRX5355417 0.0 Metagenome 3300004000 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLB_D2 DOE Joint Genome Institute (JGI) 3300004000 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.197102 -122.010033 844446966 2609203 993 21 1952 30 SRX7142744 Unrestricted 0.0 Metagenome 7000000463 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 1, subject 159591683 replicate 2 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000463 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 15347304 26088 0 0 0 0 SRX024607, SRX024608, SRX024702, SRX024703 0.0 Metagenome 3300030125 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from colorectal cancer patient in Ann Arbor, USA - MG100137 University of Michigan 3300030125 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 42.28 -83.74 16773871 32677 46 0 90 0 0.0 Metagenome 3300047278 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Yukon River, Alaska, USA - NASQAN2015_013 DOE Joint Genome Institute (JGI) 3300047278 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 61.9336 -162.8829 180470238 440921 296 42 562 69 Unrestricted 17.77 Metagenome 3300070329 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_008-O-20190620-COMP-DNA1 3300070329 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 46579845 137322 85 10 182 16 0.0 Metagenome 3300029507 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005383-51 Beijing Genomics Institute (BGI) 3300029507 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 118045181 143071 78 0 106 0 0.0 Metagenome 3300034988 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0606M20 DOE Joint Genome Institute (JGI) 3300034988 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8962 -97.0386 367980258 846284 393 12 678 28 SRX8256053 Unrestricted 6.54 Metagenome 3300022346 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1OPP1 JM52 AGRF 3300022346 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 36415032 69885 35 1 54 3 0.0 Metagenome 3300022917 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L154-409C-5 DOE Joint Genome Institute (JGI) 3300022917 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 580858514 1246580 442 76 801 122 SRX4801148 Unrestricted 8.58 Metagenome 3300014009 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00972 Weill Cornell Medical College 3300014009 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.82 17732001 28240 13 0 15 0 SRX822934 0.0 Metagenome 3300011613 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00699 Weill Cornell Medical College 3300011613 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.84 -73.93 30651387 40704 12 0 24 0 SRX822666 0.0 Metagenome 3300006993 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 764224817 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300006993 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 11608786 18811 12 0 14 0 SRX025183 0.0 Metagenome 3300003830 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 3 um filter DOE Joint Genome Institute (JGI) 3300003830 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes jbanfield@berkeley.edu, jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield, Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 960411992 1759246 1186 34 1907 57 SRX2770553 Unrestricted 0.0 Metagenome 3300049177 *Microbiome Permanent Draft Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama - S007_CH13_fluctuating_T4 DOE Joint Genome Institute (JGI) 3300049177 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes njbouskill@lbl.gov Nicholas Bouskill No Environmental Terrestrial Tropical forest Soil Bulk soil Soil 9.17936 -79.8296 436987129 1230406 346 20 567 47 Unrestricted 6.97 Metagenome 3300025059 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from Cariaco Basin, Caribbean Sea - 30_WHOI_OMZ (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025059 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 10.847 -65.114 59877336 107069 41 2 49 3 SRX2929478 Unrestricted 0.0 Metagenome 3300004184 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 1_LOW4 DOE Joint Genome Institute (JGI) 3300004184 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 261524419 748244 134 0 270 3 SRX2719552 Unrestricted 0.0 Metagenome 3300001293 *Microbiome Permanent Draft Saline water microbial communities from Bras del Port Salterns, Alicante, Spain Saline water microbial communities from Bras del Port Salterns, Alicante, Spain - SS37 (2) GATC-Biotech AG, Konstanz, Germany 3300001293 Metagenome Analysis released per PI No Yes redcancerbero@gmail.com, alm067@ucsd.edu Alvaro M. Plominsky No Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Unclassified Saline water 38.1923 -0.555207 6766501 9333 5 0 7 0 0.0 Metagenome 3300013839 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01504 Weill Cornell Medical College 3300013839 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.99 12644243 22397 16 0 27 0 SRX823380 0.0 Metagenome 3300028173 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_150m DOE Joint Genome Institute (JGI) 3300028173 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified marine 48.6 -123.5 307675853 559220 234 0 324 0 SRX5244624 Unrestricted 37.17 Metagenome 3300002779 *Microbiome Permanent Draft Marine microbial communities from beach sites at Atlantic City and Ocean City , New Jersey Marine microbial communities from beach sites at Ocean City, NJ 3300002779 Metagenome Analysis released by JGI data releasing policy No Yes cli@emsl.com Quanyi Li No Environmental Aquatic Intertidal zone Marine Beach/Shore Marine 39.268447 -74.581474 0 0 0 0 0 0 0.0 Metagenome 3300009983 *Microbiome Permanent Draft Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions Switchgrass associated microbial communities from Austin, Texas, USA - LS_189 metaG DOE Joint Genome Institute (JGI) 3300009983 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes esinger@lbl.gov; twoyke@lbl.gov Esther Singer; Tanja Woyke No Host-associated Plants Phylloplane/Leaf Phyllosphere Endophytes Switchgrass associated 30.387 -97.7301 32775502 74932 95 12 166 28 SRX3197754 Unrestricted 0.0 Metagenome 3300057171 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2020-0119 DOE Joint Genome Institute (JGI) 3300057171 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.82726 -83.19041 74660847 135316 70 70 131 93 Unrestricted 68.21 Metagenome 3300012094 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ858 (22.06) DOE Joint Genome Institute (JGI) 3300012094 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.0741 163.8918 939158697 2036446 850 18 1375 37 SRX3372556 Unrestricted 0.0 Metagenome 3300031701 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - AG5_Bottom DOE Joint Genome Institute (JGI) 3300031701 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified Marine 70.5467 -122.9077 721215136 1527014 757 116 1229 184 SRX5797750 Unrestricted 20.79 Metagenome 3300046707 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 soil DOE Joint Genome Institute (JGI) 3300046707 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.120985 -123.271523 5.34 894598837 1435441 317 11 509 14 Unrestricted 12.9 Metagenome 3300037456 *Microbiome Permanent Draft Soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA Soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA - S5.2016.400 DOE Joint Genome Institute (JGI) 3300037456 Metagenome Analysis metaspades v. 3.13.0 Yes Yes adina@iastate.edu Adina Howe No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.0127 -93.7445 2139647582 3565247 606 5 1032 11 SRX9161663 Unrestricted 14.66 Metagenome 3300005888 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_103 DOE Joint Genome Institute (JGI) 3300005888 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 295643322 978948 480 11 889 15 SRX2564881, SRX2581055 Unrestricted 0.0 Metagenome 3300001474 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Cubitermes ugandensis crop segment gut microbial communities from Kakamega Forest, Kenya - Cu122C DOE Joint Genome Institute (JGI) 3300001474 Metagenome Analysis Yes Yes brune@mpi-marburg.mpg.de Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 0.2917 34.856 110766665 375811 3 5 2 6 SRX2553488 Unrestricted 0.0 Metagenome 3300055285 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_TH_036D DOE Joint Genome Institute (JGI) 3300055285 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0701 10.4326 437346683 1142078 408 17 784 47 Unrestricted 0.0 Metagenome 3300006039 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T2_30-Apr-14 DOE Joint Genome Institute (JGI) 3300006039 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 400327871 1311092 645 222 1178 397 SRX2838889 Unrestricted 0.0 Metagenome 3300007780 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 763961826 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007780 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 22276974 37690 0 0 0 0 SRX101406, SRX024114 0.0 Metagenome 3300020119 *Microbiome Permanent Draft Soil bacterial communities from Switchgrass agricultural field in Lux Arbor, Michigan, USA Soil bacterial communities from Switchgrass agricultural field in Lux Arbor, Michigan, USA - site F1, fertilized Michigan State University 3300020119 Metagenome Analysis Metahit released by JGI data releasing policy Yes Yes aarongaroutte@gmail.com Aaron J. Garoutte No Environmental Terrestrial Unclassified Soil Agricultural land Soil 42.4891 -85.4641 3880244290 7075981 1321 46 2194 92 0.0 Metagenome 2228664018 *Microbiome Permanent Draft Termite hindgut microbial communities from Amitermes wheeleri in the Arizona desert and from Nasutitermes corniger in Florida, USA Amitermes wheeleri hindgut microbial communities from Arizona, USA - 3 DOE Joint Genome Institute (JGI) 2228664018 Metagenome Analysis Velvet, Newbler, Phrap No Yes phugenholtz@lbl.gov Phil Hugenholtz Yes 23593407 Host-associated Arthropoda: Insects Hindgut Digestive system Paunch/P3 segment Termite hindgut 31.519 -110.001 107774793 263198 191 0 845 0 0.0 Metagenome 3300047552 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Arikaree River, Idalia, Colorado, USA - arikareeriver_2019_sw_WHONDRS-S19S_0023 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047552 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 39.7585 -102.4491 335858386 604684 197 34 320 50 Unrestricted 0.0 Metagenome 3300070728 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Mountain Lake Biological Station, Virginia, USA - MLBS_063-O-20180612-COMP-DNA1 3300070728 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 64154292 169184 66 8 155 10 0.0 Metagenome 3300006883 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T10 (1) BES, Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006883 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com; tianakorin@googlemail.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis; Tetyana Korin No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 42409902 73900 65 0 84 0 0.0 Metagenome 3300034898 *Microbiome Permanent Draft Understanding the reciprocal impacts of modified plant cell wall and associated microbiome Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R3 DOE Joint Genome Institute (JGI) 3300034898 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kalluriudayc@ornl.gov Udaya C. Kalluri No Host-associated Plants Stem Phyllosphere Wood/Secondary xylem xylem 32.1348 -81.9657 495975148 523686 86 260 117 125 SRX7584739, SRX7584738 Unrestricted 0.0 Metagenome 3300054091 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100 re-annotation DOE Joint Genome Institute (JGI) 3300054091 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 626213914 1127077 297 2 479 2 SRX3960249 0.0 Metagenome 3300017789 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06) DOE Joint Genome Institute (JGI) 3300017789 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.0586 163.6839 2444837402 5011667 1536 7 2514 19 SRX3048371 Unrestricted 10.09 Metagenome 3300032192 *Microbiome Permanent Draft Microbial communities from the deep biosphere Fracture water microbial communities from Au mines near Welkom, South Africa - MM51940FW200712 re-assembly The Marine Biological Laboratory 3300032192 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Fracking water Deep subsurface Unclassified Fracture water -27.98 26.88 55244366 119630 79 0 154 0 SRX745165, SRX729930, SRX729922 0.0 Metagenome 3300071024 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_006-M-20190610-COMP-DNA1 3300071024 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 6294 24 1 0 5 0 0.0 Metagenome 3300035194 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2010_1000m DOE Joint Genome Institute (JGI) 3300035194 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 50.0 -145.0 389699875 974898 329 44 556 67 SRX8187629 Unrestricted 13.93 Metagenome 3300000681 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 48 DOE Joint Genome Institute (JGI) 3300000681 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 5600810 18614 18 0 43 0 SRX4340970 Unrestricted 0.0 Metagenome 3300025105 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC16 2012 metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025105 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca; jkjarett@lbl.gov Ramunas Stepanauskas; Peter Dunfield; Jessica Jarett No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 49.9543 -116.5155 8.15 276844252 390494 224 0 295 0 SRX2839021 Unrestricted 0.0 Metagenome 3300015257 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231_16_10D DOE Joint Genome Institute (JGI) 3300015257 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9225 -106.9515 257346248 611820 337 10 651 27 SRX3780466 Unrestricted 4.6 Metagenome 3300002633 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A1-12 DOE Joint Genome Institute (JGI) 3300002633 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 1416288 4535 38 4 64 13 SRX1991155 Unrestricted 0.0 Metagenome 3300038326 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI146_2018_oct_135m DOE Joint Genome Institute (JGI) 3300038326 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 310941910 671252 273 28 424 42 SRX9401561 Unrestricted 15.33 Metagenome 3300061679 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0585 Microbiome Insights 3300061679 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 508428043 709031 141 6 205 6 0.0 Metagenome 3300017767 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 29 SPOT_SRF_2011-12-20 DOE Joint Genome Institute (JGI) 3300017767 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 440708380 1051859 93 41 174 83 SRX5471783, SRX5471782, SRX5471781 Unrestricted 0.0 Metagenome 3300028766 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_2 DOE Joint Genome Institute (JGI) 3300028766 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 472460212 974286 251 77 437 117 SRX5356673 Unrestricted 0.0 Metagenome 3300009893 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY6 University of New South Wales 3300009893 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 20075127 35760 11 0 15 0 0.0 Metagenome 3300031598 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #284 DOE Joint Genome Institute (JGI) 3300031598 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5596 77.8957 755338975 1644292 263 14 428 21 SRX5650158 Unrestricted 0.0 Metagenome 3300057056 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F2P_9_10 DOE Joint Genome Institute (JGI) 3300057056 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.97683846 -81.7074257 1392880365 2135510 571 1 905 0 Unrestricted 12.61 Metagenome 3300005481 *Microbiome Finished Sediment methylotrophic communities from Lake Washington, Seattle, Washington, USA Sediment microbial communities from Lake Washington, Seattle, Washington, USA - Methylamine enrichment DOE Joint Genome Institute (JGI) 3300005481 Metagenome Analysis LUCY, PGA Assembler Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova Yes 18711340 Environmental Aquatic Lentic Freshwater Sediment Sediment 47.63458 -122.26655 37194622 64945 17 3 31 4 0.0 Metagenome 3300005998 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius tantulus BAHAMAS.2 DOE Joint Genome Institute (JGI) 3300005998 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 155193088 536670 6 5 11 11 SRX2711961 Unrestricted 0.0 Metagenome 3300045575 *Microbiome Draft Lake microbial communities from Canada Lake sediment microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-505 Genome Quebec 3300045575 Metagenome Analysis MEGAHIT v1.0.6 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Lake Sediment 50.202061 -120.055602 102383390 144648 62 5 124 6 0.0 Metagenome 3300014155 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin05_60_metaG DOE Joint Genome Institute (JGI) 3300014155 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 981404246 1689017 473 2 778 5 SRX3292350 Unrestricted 14.05 Metagenome 3300048124 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_130612.NP2 DOE Joint Genome Institute (JGI) 3300048124 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 846499343 1883745 576 151 783 278 Unrestricted 11.27 Metagenome 3300029116 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021219-39 Beijing Genomics Institute (BGI) 3300029116 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 155366062 202124 160 0 185 0 0.0 Metagenome 3300020593 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - eDNA 5th pass 37_C Kraft MG (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300020593 Metagenome Analysis spades v. 3.10.1 Yes Yes JMGladden@lbl.gov John Gladden No Engineered Solid waste Composting Mixed feedstock Commercial compost compost 37.83 -122.29 275411377 430030 157 1 204 2 SRX4062859, SRX4062860 Unrestricted 0.0 Metagenome 3300013175 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100680 University of Pennsylvania 3300013175 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 53628651 103189 28 0 39 0 SRX756414 0.0 Metagenome 3300024927 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 34_HOW6 (SPAdes) DOE Joint Genome Institute (JGI) 3300024927 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 51172895 92733 36 3 47 4 SRX2720411 Unrestricted 0.0 Metagenome 3300014300 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D1 DOE Joint Genome Institute (JGI) 3300014300 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jzz0026@lbl.gov; sgtringe@lbl.gov Jinglie Zhou; Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.05241603 -121.76907401 268130193 674039 377 4 711 6 SRX7182403 Unrestricted 0.0 Metagenome 3300035178 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 7_7.5_N_12_1 DOE Joint Genome Institute (JGI) 3300035178 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1863 -2.2145 1563662878 3938358 350 0 502 2 SRX8232512 Unrestricted 7.49 Metagenome 2051223006 *Microbiome Permanent Draft Human fecal microbial communities from Orebro University Hospital, Sweden, of individuals with Crohns disease Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10374 University of Maryland School of Medicine 2051223006 Metagenome Analysis released per JGI data release policy No Yes cmfraser@som.umaryland.edu Claire Fraser No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 59.274717 15.230656 64033979 99163 0 0 0 0 0.0 Metagenome 3300033429 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Coastal sediment microbial communities from Maine, United States - Merrow Island sediment 2 DOE Joint Genome Institute (JGI) 3300033429 Metagenome Analysis spades v. 3.13.0 Yes Yes jbeam@bigelow.org; demerson@bigelow.org Jake Beam; David Emerson No Environmental Aquatic Coastal Marine Sediment sediment 43.8826 -69.6616 3434221091 8052015 2107 48 3638 91 SRX5822358 Unrestricted 8.87 Metagenome 3300018413 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011509CT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300018413 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1326771939 3023702 1543 83 2869 160 SRX4068624 Unrestricted 24.23 Metagenome 3300060413 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210529_02_21 DOE Joint Genome Institute (JGI) 3300060413 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 873869463 1301194 318 171 441 230 Unrestricted 27.65 Metagenome 3300037220 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 P-3-S DOE Joint Genome Institute (JGI) 3300037220 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0472 917069782 1856235 332 43 600 76 SRX8148217 Unrestricted 8.13 Metagenome 3300007088 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila neotestacea male 4 gut Cornell University 3300007088 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy Yes Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila neotestacea male adult gut 43.025606 -77.572811 75110687 229072 77 14 144 23 0.0 Metagenome 3300027242 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1554B-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027242 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2871 -123.9424 173455398 356019 128 4 212 8 SRX2753731 Unrestricted 0.0 Metagenome 3300027859 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027859 Metagenome Analysis spades v. 3.11.1 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine -17.283 2.9768 1445753793 3131209 648 630 841 1051 SRX2998260 Unrestricted 0.0 Metagenome 3300027424 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S PM (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027424 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 195753981 564594 448 31 797 81 SRX2574955 Unrestricted 0.0 Metagenome 3300021306 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen5, Rep 3 DOE Joint Genome Institute (JGI) 3300021306 Metagenome Analysis spades v. 3.11.1-check Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4149 -119.841 227162177 290805 320 3 343 6 SRX4038239 Unrestricted 105.47 Metagenome 3300006330 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_1000m University of Hawaii 3300006330 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Aphotic zone Marine 22.75 -158.0 346740884 861514 576 24 850 32 0.0 Metagenome 3300026326 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0927_09_40cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026326 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 662628871 1207776 331 12 606 15 SRX2521034 Unrestricted 0.0 Metagenome 3300050341 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Drouetiella lurida LUKESOVA 1986/6 and co-occurring heterotrophs from soil from City of Most, Czech Republic - 20190301_18B (v2) (version 2) DOE Joint Genome Institute (JGI) 3300050341 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Clay Soil Unclassified Soil 50.5402 13.6052 10173202 9783 2 0 3 0 Restricted 0.0 Metagenome 3300036766 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL18G_05-S DOE Joint Genome Institute (JGI) 3300036766 Metagenome Analysis metaspades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5106 -110.3566 2531361597 3635130 1205 10 1883 10 SRX8273855 Unrestricted 17.63 Metagenome 3300064764 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 592 in High Prairie, Alberta, Canada - S00JY_0624 Microbiome Insights 3300064764 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 55.24151489 -116.2510406 77474722 111014 46 0 92 1 0.0 Metagenome 2022920008 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP4 Joseph's Coat Springs v2 (version 2) DOE Joint Genome Institute (JGI) 2022920008 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23720654 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.733519 -110.333 6.1 14407932 21034 122 0 20 0 Unrestricted 0.0 Metagenome 3300005974 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Section #1 (SPADES assembly) (version 2) DOE Joint Genome Institute (JGI) 3300005974 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, jim.fredrickson@pnnl.gov Natasha Ivanova, Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.973481 -119.476345 54497493 79097 85 13 98 15 SRX3311903 Unrestricted 0.0 Metagenome 3300005392 *Microbiome Draft Switchgrass adapted compost microbial communities from mini bioreactor at UC Davis Thermophilic enrichment culture from UC Davis - Sample SG0.5Z960 (454-Illumina assembly) (version 2) DOE Joint Genome Institute (JGI) 3300005392 Metagenome Analysis Unkonwn released based on JGI ITS No Yes swsinger@lbl.gov, JMGladden@lbl.gov; SWSinger@lbl.gov Steven Willian Singer, John Gladden; Steven W. Singer No Engineered Solid waste Composting Grass Bioreactor Switchgrass adapted compost 38.5382364 -121.7639012 29361615 34669 24 0 23 0 Unrestricted 0.0 Metagenome 3300001891 *Microbiome Permanent Draft Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils (2) Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils - Sample8 3300001891 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Terrestrial Unclassified Soil Grasslands Grassland soil 23.850674 69.734802 0 0 0 0 0 0 0.0 Metagenome 3300025350 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Archaeal communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter C (PS_C) MetaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025350 Metagenome Analysis spades v. 3.11.1 Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Unclassified Thermal springs Unclassified Hot spring 44.376 -110.69 91208616 120521 60 0 62 0 SRX2577286 Unrestricted 0.0 Metagenome 3300065613 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 804 in Youngstown, Alberta, Canada - S00JY_0644 Microbiome Insights 3300065613 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.42228558 -111.0505801 44872558 62014 34 0 53 1 0.0 Metagenome 3300002394 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 22AUG2011 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002394 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 34473818 86123 83 8 138 7 SRX1989654 Unrestricted 0.0 Metagenome 3300032741 *Microbiome Permanent Draft Understanding the reciprocal impacts of modified plant cell wall and associated microbiome Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-PdKOR-R3 DOE Joint Genome Institute (JGI) 3300032741 Metagenome Analysis spades v. 3.13.0 Yes Yes kalluriudayc@ornl.gov Udaya C. Kalluri No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 32.1348 -81.9657 515318819 503424 27 75 46 64 SRX6873103 Unrestricted 0.0 Metagenome 3300012597 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100260 University of Pennsylvania 3300012597 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 15124626 38922 11 0 29 0 SRX756641 0.0 Metagenome 3300008970 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Final time point T34 (3) (BES) benzoate enrichments of Methanogenic microbial communities using Athabasca oil sands as inoculum DE NOVO (2) Shell Corporation 3300008970 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 109051497 294762 146 0 159 2 0.0 Metagenome 3300029180 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 532_12M Beijing Genomics Institute (BGI) 3300029180 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 48622658 63565 36 0 57 0 ERX491180 0.0 Metagenome 3300038361 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI152_2019_jun_150m DOE Joint Genome Institute (JGI) 3300038361 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 416610134 846176 344 4 582 9 SRX9402807 Unrestricted 11.9 Metagenome 7000000215 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764892411 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000215 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 5977280 14765 0 0 0 0 0.0 Metagenome 3300028721 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355 DOE Joint Genome Institute (JGI) 3300028721 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92029456 -106.94875775 616866399 1599968 422 9 699 22 SRX5355403 Unrestricted 12.12 Metagenome 3300028354 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #397 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028354 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 51622259 89454 29 1 47 1 SRX3296257 Unrestricted 0.0 Metagenome 3300067160 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210606_10_13 DOE Joint Genome Institute (JGI) 3300067160 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 312514732 499703 199 131 285 158 Unrestricted 0.0 Metagenome 3300015679 *Microbiome Permanent Draft Microbial communities associated with sugarcane Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.4_F08 Universidade Estadual de Campinas 3300015679 Metagenome Analysis SPADES released by JGI data releasing policy No Yes scs.rafael@gmail.com Rafael Souza No Host-associated Plants Unclassified Roots Unclassified Root Endosphere -22.8187222 -47.05896667 4939212 4870 8 0 7 0 0.0 Metagenome 3300056820 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - APS4_20C_TP2_16O DOE Joint Genome Institute (JGI) 3300056820 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 1962144367 2581376 433 120 618 188 Unrestricted 21.52 Metagenome 3300003383 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM DOE Joint Genome Institute (JGI) 3300003383 Metagenome Analysis revert back to private per Christa Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 18458043 52501 190 15 375 20 SRX2574890 Unrestricted 0.0 Metagenome 3300019476 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 9 Autonomous University of Barcelona 3300019476 Metagenome Analysis SPAdes 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 5084851 9912 6 0 7 0 0.0 Metagenome 3300047294 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from St. Lawrence River, NewYork, USA - NASQAN2016_164 DOE Joint Genome Institute (JGI) 3300047294 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 240369328 468051 95 28 178 47 Unrestricted 30.28 Metagenome 3300005670 *Microbiome Permanent Draft Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia Enhanced biological phosphorus removal bioreactor viral communities from the University of Queensland, Australia - SBR4-V90104 Phage Sequencing University of Queensland 3300005670 Metagenome Analysis CLC 6.0 Released per Connor Skennerton (Sep 15, 2015) No Yes c.skennerton@gmail.com Connor Skennerton No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor lab-scale EBPR bioreactor -27.49999 153.012098 28157898 74248 8 2 30 1 0.0 Metagenome 3300070583 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_001-M-20180723-COMP-DNA1 Battelle Memorial Institute 3300070583 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.128258 -99.257768 6.8-7.99 5208694 17119 64 4 121 11 0.0 Metagenome 3300047473 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Vasterbotten County, Sweden - Sphagnum lindbergii 11C_LI_DE DOE Joint Genome Institute (JGI) 3300047473 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.183 19.5578 1177720893 2483380 505 83 865 140 SRX14781073 Unrestricted 7.48 Metagenome 7000000268 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160502038 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000268 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 71131119 137933 0 0 0 0 0.0 Metagenome 3300029004 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 387_12M Beijing Genomics Institute (BGI) 3300029004 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 69107835 89226 46 0 69 0 ERX491125 0.0 Metagenome 3300039095 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - ASC1 Michigan State University 3300039095 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 30.0 163.0 48950731 125748 7 1 14 0 0.0 Metagenome 3300001498 *Microbiome Finished Human fecal microbial communities from the University of Tokyo, Japan, of healthy Japanese infants and adults Human fecal microbial communities from the University of Tokyo - healthy human sample In-A, Adult, Male 3300001498 Metagenome Analysis PCAP released per Nikos No Yes hattori@k.u-tokyo.ac.jp Hattori M Yes 17916580 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 35.71 139.76 0 0 0 0 0 0 0.0 Metagenome 3300016738 *Microbiome Permanent Draft Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA - Biofuel metagenome 5 (version 2) (version 3) DOE Joint Genome Institute (JGI) 3300016738 Metagenome Analysis Yes Yes hrbeller@lbl.gov Harry Beller Yes 29556105 Engineered Bioreactor Unclassified Anaerobic Unclassified Bioreactor 37.8754404 -122.2477251 352029445 530499 218 3 286 1 SRX2553648 Unrestricted 0.0 Metagenome 3300009291 *Microbiome Permanent Draft Estuarine microbial communities from Mobile Bay, Alabama Estuarine microbial communities from Mobile Bay, Alabama - Sample Fl re-assembly with CLC Auburn University 3300009291 Metagenome Analysis CLC 9 De novo released per JGI data release policy No Yes mariitarichard@gmail.com, rmm0025@auburn.edu; mariitarichard@gmail.com Richard Mariita, Richard M. Mariita; Richard Mariita No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 30.4464641 -87.9922684 165978 626 4 0 5 0 0.0 Metagenome 3300001981 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - Control3 3300001981 Metagenome Analysis Metavelvet released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 5625579 32219 137 1 224 7 0.0 Metagenome 3300040528 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Woodworth, Northern Plains, ND, USA - WOOD_002-M-20140507-COMP-DNA1 Argonne National Laboratory 3300040528 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12823 -99.24136 3176760 9629 37 3 66 6 ERX2134046 0.0 Metagenome 3300000470 *Microbiome Permanent Draft Salt marsh microbial communities from Little Sippewissett, Woods Hole, MA that are anoxygenic and photosynthetic Microbial Communities from Little Sippewissett Salt Marsh, Woods Hole, MA that are anoxygenic and photosynthetic, Photosynthetic Consortia grown using light of 590nm sample 1 Marine Biological Laboratory 3300000470 Metagenome Analysis No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Intertidal zone Marine Salt marsh Salt Marsh 41.5758508 -70.635807 55293564 91037 28 0 55 1 0.0 Metagenome 3300012078 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC083 MetaG DOE Joint Genome Institute (JGI) 3300012078 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 34.9174 -79.3535 204960748 361255 278 8 417 29 SRX3539725 Unrestricted 0.0 Metagenome 3300006152 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t30_692M_control - microbial_metagenome University of Texas Southwestern Medical Center 3300006152 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 207339412 381187 271 1 300 4 0.0 Metagenome 3300026190 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF86A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026190 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 187287437 430724 165 156 259 284 SRX2782311 Unrestricted 0.0 Metagenome 3300039703 *Microbiome Permanent Draft Glacier soil microbial communities from Mackay Glacier, Antarctica Glacier soil microbial communities from Mackay Glacier, Antarctica - BG12-3 University of Pretoria 3300039703 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Terrestrial Glacier Soil Unclassified Glacier soil -76.869 161.75 46257109 86101 23 0 36 0 0.0 Metagenome 3300035581 *Microbiome Permanent Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-10-2_at_4-5_cm Genome Quebec 3300035581 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.88147 -73.76618 926364241 2176135 676 13 1345 20 0.0 Metagenome 3300029462 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001848-98 Beijing Genomics Institute (BGI) 3300029462 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 112063187 152549 99 1 140 0 0.0 Metagenome 3300009627 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_8_10 DOE Joint Genome Institute (JGI) 3300009627 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 244469235 521277 273 188 536 323 SRX3002123 Unrestricted 0.0 Metagenome 3300007716 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1546B-3 DOE Joint Genome Institute (JGI) 3300007716 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2311 -123.8825 324702934 640716 364 88 606 132 SRX2753620 Unrestricted 0.0 Metagenome 3300037604 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - ARW1_20151203 DOE Joint Genome Institute (JGI) 3300037604 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 236564812 357427 117 7 172 12 SRX9140357 Unrestricted 42.17 Metagenome 3300027695 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027695 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 403242281 1110932 484 27 923 52 SRX2573616 Unrestricted 0.0 Metagenome 3300025132 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025132 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 18.92 -108.7999 518468271 1248983 28 0 26 1 SRX2557363 Unrestricted 0.0 Metagenome 3300007963 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300007963 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -13.003 -80.809 377724474 801763 46 1 58 0 SRX2752464, SRX2752463 Unrestricted 0.0 Metagenome 3300003749 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius imperfectus BELIZE.2 DOE Joint Genome Institute (JGI) 3300003749 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 272015213 708674 27 7 38 7 SRX3299583 Unrestricted 0.0 Metagenome 3300041547 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_273 MetaG AgResearch, New Zealand, Mosgeil 3300041547 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1069910884 2234625 288 23 1066 36 0.0 Metagenome 3300036479 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C4-3B DOE Joint Genome Institute (JGI) 3300036479 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 103238296 334255 275 15 510 11 SRX8786731 Unrestricted 4.21 Metagenome 3300071082 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_048-M-20210310-COMP-DNA1 3300071082 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 49546 172 7 1 9 1 0.0 Metagenome 3300015306 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_22AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015306 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 142253563 285885 112 120 178 200 SRX3925761 Unrestricted 6.64 Metagenome 3300004818 *Microbiome Permanent Draft Trench sediment microbial communities from the deep Pacific Ocean Trench sediment microbial communities from the deep Pacific Ocean Macrogen 3300004818 Metagenome Analysis Newbler v 2.9 released per JGI data release policy No Yes m.tangherlini@univpm.it, michael.tangherlini@szn.it Michael Tangherlini No Environmental Aquatic Unclassified Sediment Unclassified Deep-sea sediment 29.0 142.0 9867174 21262 0 0 2 0 0.0 Metagenome 3300002112 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A2-11 DOE Joint Genome Institute (JGI) 3300002112 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 1788822 6314 44 0 74 0 SRX1990512 Unrestricted 0.0 Metagenome 3300013740 *Microbiome Permanent Draft Oral microbial communities from fossilized dental plaque from Dalheim, Germany Oral microbial communities from fossilized dental plaque from Dalheim, Germany - S9-Shot-G12-calc University of Oklahoma 3300013740 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skeletonized remains Remains Dental calculus Fossilized dental plaque 51.565093 8.849015 39941184 109636 94 0 177 0 SRX340018 0.0 Metagenome 3300013362 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01505 Weill Cornell Medical College 3300013362 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.99 21329938 32236 27 4 28 5 SRX823381 0.0 Metagenome 3300007043 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 638754422 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007043 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; snayfach@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 102011251 130657 80 0 119 0 0.0 Metagenome 3300027509 *Microbiome Permanent Draft Genome and metagenome analysis of marine red algae Porphyra Marine algal microbial communities from Bantry Bay, Ireland - BantryBay_4 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027509 Metagenome Analysis spades v. 3.11.1 Yes Yes Brawley@maine.edu Susan Brawley No Host-associated Algae Unclassified Red algae Unclassified Marine 51.64 -9.71 442805623 616486 154 9 218 16 SRX2954971 Unrestricted 0.0 Metagenome 7000000500 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 764508039 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000500 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 55196 103 0 0 0 0 SRX024216 0.0 Metagenome 2162886015 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - FO (Mercury 0.02g/kg) assembled 454 Life Sciences 2162886015 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.804241 -0.372114 50520744 78215 20 4 37 7 0.0 Metagenome 3300027391 *Microbiome Permanent Draft Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran, Adriatic Sea Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge pinacoderm, lysed by proteinase K digestion (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027391 Metagenome Analysis spades v. 3.11.1 Yes Yes ute.hentschel@uni-wuerzburg.de Ute Hentschel No Host-associated Porifera Unclassified Sponge Unclassified Host-associated 45.5099 13.56 366352704 536904 143 14 182 21 SRX4919989 Unrestricted 0.0 Metagenome 2156126005 *Microbiome Draft Marine Trichodesmium cyanobacterial communities from the Bermuda Atlantic Time-Series Marine Trichodesmium cyanobacterial communities from the Bermuda Atlantic Time-Series DOE Joint Genome Institute (JGI) 2156126005 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes tglavina@lbl.gov, tmincer@fau.edu Tijana Glavina del Rio, Tracy Mincer No Environmental Aquatic Oceanic Marine Unclassified Marine 25.5 -67.3 131475334 242907 303 111 171 0 Unrestricted 0.0 Metagenome 3300070879 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_043-M-20200805-COMP-DNA1 Battelle Memorial Institute 3300070879 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.131002 -99.242763 7.19-8.06 14407119 45031 36 2 75 7 0.0 Metagenome 3300038665 *Microbiome Draft Saline water viral communities of the coast of Qinghai Lake, Qinghai province, China Saline water viral communities of the coast of Qinghai Lake, Qinghai province, China - QHH1 Beijing Novogene Bioinformatics Technology Co., Ltd 3300038665 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes 1054738805@qq.com Chengxiang Gu No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 36.81170016 100.76323976 7897236 20249 29 1 72 5 0.0 Metagenome 3300047179 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Frasne, France - Sphagnum fallax 8OTC_SF_FR DOE Joint Genome Institute (JGI) 3300047179 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 1343385115 2366133 431 99 717 168 SRX14794119 Unrestricted 10.77 Metagenome 3300069507 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_006-O-20170620-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069507 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 69827355 177834 55 11 81 23 0.0 Metagenome 3300035045 *Microbiome Permanent Draft Marine planktonic microbial communities from Bay of Bengal, Indian Ocean Marine planktonic microbial communities from Bay of Bengal, Indian Ocean - 3V (SRX5580378-SRR8790597) Nanyang Technological University 3300035045 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released by JGI data releasing policy Yes Yes flauro@ntu.edu.sg Federico Lauro No Environmental Aquatic Unclassified Marine Unclassified Marine planktonic 6.04 90.74 898791825 2093362 602 248 946 366 0.0 Metagenome 3300001518 *Microbiome Permanent Draft Sheep rumen microbial communities from New Zealand from high and low methane emitting sheep Sheep rumen microbial communities from New Zealand - Rank45_high DOE Joint Genome Institute (JGI) 3300001518 Metagenome Analysis Velvet Released because these are assemblies from SRA data No Yes janine.kamke@agresearch.co.nz, janine.kamke@uni-wuerzburg.de Janine Kamke No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen -40.352 175.608 148543907 306958 518 51 840 64 0.0 Metagenome 3300011350 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100686 University of Pennsylvania 3300011350 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 11328096 30743 20 1 27 3 SRX756408 0.0 Metagenome 3300038957 *Microbiome Permanent Draft Sludge microbial communities from anaerobic digestion of cattle manure in bioreactor, Technical University of Denmark, Kongens Lyngby, Denmark Sludge microbial communities from anaerobic digestion of cattle manure in bioreactor, Technical University of Denmark, Kongens Lyngby, Denmark - thermophilic post H2 Technical University of Denmark 3300038957 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Bioreactor Unclassified Anaerobic Unclassified sludge 55.78829 12.52682 265190998 388744 422 0 532 0 0.0 Metagenome 3300044847 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - C1-8-23-19 DOE Joint Genome Institute (JGI) 3300044847 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.3083 -120.4144 546182505 1449147 591 65 1018 106 Restricted 7.42 Metagenome 3300040040 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA Prairie soil microbial communities from Boone County, Iowa, USA - P46-WS-July2012 Iowa State University 3300040040 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land Prairie soil 42.01375 -93.783837 14833329 48459 72 2 144 3 0.0 Metagenome 3300035657 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS53_12 University of Hohenheim 3300035657 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 129478469 166436 126 0 190 0 0.0 Metagenome 3300007806 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 764042746 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007806 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 79849403 91664 54 0 82 0 0.0 Metagenome 3300059755 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1549B-3 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059755 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2322 -123.8817 158411819 340269 170 32 286 65 SRX2753721 Unrestricted 0.0 Metagenome 3300050292 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_53 DOE Joint Genome Institute (JGI) 3300050292 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -75.662 158.876 223808491 335159 22 9 29 12 SRX18236969 Restricted 48.28 Metagenome 3300019368 *Microbiome Permanent Draft Mouse fecal microbial communities from Athens, Georgia, USA Mouse fecal microbial communities from Athens, Georgia, USA - 8J1C Georgia Genomics Facility 3300019368 Metagenome Analysis megahit released by JGI data releasing policy No Yes ptu@live.unc.edu Pengcheng Tu No Host-associated Mammals Large intestine Digestive system Fecal mouse fecal 33.9519 -83.3576 44105119 57406 80 0 76 0 0.0 Metagenome 3300001359 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A30-35cm)- 6 month illumina University of Tennessee 3300001359 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 104332049 399429 276 6 429 13 0.0 Metagenome 3300038618 *Microbiome Permanent Draft Seawater microbial communities from the Baltic Proper 10 km east of Oland, Sweden Seawater microbial communities from the Baltic Proper 10 km east of Oland, Sweden - LMO_121128 Royal Institute of Technology 3300038618 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 26667648 Environmental Aquatic Unclassified Marine Unclassified Seawater 56.93085 17.060667 59330038 136491 64 14 100 18 SRX1050769 0.0 Metagenome 3300024356 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepC_8d DOE Joint Genome Institute (JGI) 3300024356 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 187912269 397227 199 13 304 16 SRX4547350 Unrestricted 12.67 Metagenome 3300002421 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP01-I3 3300002421 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300040960 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Estuary water microbial communities from Narragansett Bay, Rhode Island, USA - E2_negO2CPB DOE Joint Genome Institute (JGI) 3300040960 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.9078 -71.5683 499766610 794281 215 11 287 14 SRX9641301 Unrestricted 17.02 Metagenome 3300001565 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A35-5cm-18A)- 1 week illumina new University of Tennessee 3300001565 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 113173426 489486 656 32 1088 51 0.0 Metagenome 3300050645 *Microbiome Permanent Draft Lab-enriched moose rumen microbial communities from Nabakwasi Lake, Ontario, Canada American moose rumen microbial community from Toronto, Canada - MR-PH msp University of Toronto 3300050645 Metagenome Analysis Spades v. 3.14.1 Yes Yes camillaln@gmail.com Camilla Nesb? No Host-associated Mammals Stomach Digestive system Rumen American moose rumen 43.66 -79.4 537875337 942637 196 3 473 4 SRX13466128 0.0 Metagenome 3300070548 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_006-M-20170612-COMP-DNA1 Battelle Memorial Institute 3300070548 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 32.898842 -87.446131 5.02-5.28 3075295 9598 34 10 60 15 0.0 Metagenome 3300003656 *Microbiome Permanent Draft Hypersaline viral and bacterial communities from Bras del Port, Santa Pola, Spain Sal2totalprecorrection Lifesequencing S.L. 3300003656 Metagenome Analysis released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline samples 1948509 6163 7 0 0 0 0.0 Metagenome 3300064927 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 738 in Killam, Alberta, Canada - S00JY_0788 Microbiome Insights 3300064927 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.4334824 -111.5420862 13651295 21336 34 1 56 2 0.0 Metagenome 3300060593 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210614_18_17 DOE Joint Genome Institute (JGI) 3300060593 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 623564456 895815 303 195 436 269 Unrestricted 41.1 Metagenome 3300012145 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #2 DOE Joint Genome Institute (JGI) 3300012145 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 161744775 326194 204 31 321 51 SRX3241668 Unrestricted 0.0 Metagenome 3300019787 *Microbiome Permanent Draft Permafrost microbial communities from Stordalen Mire, Sweden Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction) DOE Joint Genome Institute (JGI) 3300019787 Metagenome Analysis metalrec/blasr v. metalrec version 1.0.2/blasr 1.3.1 Yes Yes rich.270@osu.edu Virginia Rich Yes 30013118 Environmental Terrestrial Wetlands Soil Permafrost Bog 68.35 19.05 823808930 1481205 370 16 501 18 SRX3903278, SRX3903277, SRX3903279, SRX3903281, SRX3903280, SRX3903283, SRX3903282, SRX3903284 Unrestricted 20.78 Metagenome 3300042180 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Eunicella verrucosa from Algarve, Portugal - EV04H v2 Molecular Research LP (MR DNA) 3300042180 Metagenome Analysis Metawrap workflow v. 1.0.8 released by JGI data releasing policy Yes Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 33354912 37517 7 0 10 7 0.0 Metagenome 3300007131 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 1, subject 160603188 replicate 2 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007131 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 35515067 37725 26 2 40 8 SRX024535, SRX024536 0.0 Metagenome 3300003348 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09K5-12 DOE Joint Genome Institute (JGI) 3300003348 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 278024 926 23 3 43 5 SRX2576215 Unrestricted 0.0 Metagenome 3300055506 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.1C.11 SIP fraction DOE Joint Genome Institute (JGI) 3300055506 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 127398586 209086 128 9 215 13 Unrestricted 21.08 Metagenome 3300012538 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100730 University of Pennsylvania 3300012538 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4932160 8757 6 4 11 7 SRX756120 0.0 Metagenome 3300040664 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Mid-Atlantic, VA, USA - SCBI_012-M-20140915-COMP-DNA1 Argonne National Laboratory 3300040664 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89292 -78.1395 1440268 4630 22 4 41 9 ERX2134036 0.0 Metagenome 3300036913 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 E2 30-34 DOE Joint Genome Institute (JGI) 3300036913 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0468 545660158 1038552 319 11 547 14 SRX8138931 Unrestricted 9.25 Metagenome 3300001758 *Microbiome Permanent Draft Wastewater microbial communities from Belvaux, Luxembourg Wastewater microbial communities from Belvaux, Luxembourg - M4 3300001758 Metagenome Analysis CLC genomics Workbench released by JGI data releasing policy Yes Yes goux@lippmann.lu, xavier.goux@list.lu Xavier Goux No Engineered Bioreactor Sludge Anaerobic Unclassified Wastewater 49.506095 5.943536 27991882 32608 13 0 19 0 0.0 Metagenome 3300042462 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2003-rd0039 DOE Joint Genome Institute (JGI) 3300042462 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 606021047 955506 268 46 345 59 Unrestricted 24.51 Metagenome 3300043066 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - CCW_080817 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043066 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.9035 -89.3341 5414283 18020 54 5 87 6 SRX8889439 Unrestricted 22.28 Metagenome 3300008110 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA University of Michigan 3300008110 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7026 -83.2538 9.29 472833323 874940 200 69 272 91 0.0 Metagenome 3300002828 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A4-10 DOE Joint Genome Institute (JGI) 3300002828 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 231053 778 32 1 47 1 SRX1991120 Unrestricted 0.0 Metagenome 3300011132 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01338 Weill Cornell Medical College 3300011132 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.83 -73.84 26407537 30479 8 0 9 0 SRX823278 0.0 Metagenome 3300042004 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 DOE Joint Genome Institute (JGI) 3300042004 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.8942 -103.685 519396050 1285771 639 56 1081 101 SRX14828571 Unrestricted 6.97 Metagenome 3300043317 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-357 Genome Quebec 3300043317 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.210854 -103.587957 1313606012 3175550 386 34 715 74 0.0 Metagenome 3300009760 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_17_100 DOE Joint Genome Institute (JGI) 3300009760 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 384842802 657900 231 0 390 3 SRX3005977 Unrestricted 0.0 Metagenome 3300000054 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Methanotrophs enriched from Methane stable-isotope-probing experiment McGill University 3300000054 Metagenome Analysis released per JGI data release policy No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey No Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 56.698568 -111.340799 8.7 34883595 79488 21 0 44 3 0.0 Metagenome 3300031213 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #3 DOE Joint Genome Institute (JGI) 3300031213 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.457 78.1911 274084313 530596 133 23 139 37 SRX5329015 Unrestricted 59.94 Metagenome 3300020265 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000401 (ERX556012-ERR599088) CEA Genoscope 3300020265 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -29.5023 37.9965 196133032 526668 252 13 393 21 ERX556127, ERX556096, ERX556012 0.0 Metagenome 3300004122 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius algarvensis Type A CAVOLI.3 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300004122 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 564270017 1297142 24 4 26 12 SRX2713110 Unrestricted 0.0 Metagenome 3300039336 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 624_M Beijing Genomics Institute (BGI) 3300039336 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 143776357 178539 100 0 179 0 ERX491278 0.0 Metagenome 3300045002 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - CSC4D DOE Joint Genome Institute (JGI) 3300045002 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 2025674394 3491237 770 62 1294 71 Unrestricted 14.67 Metagenome 3300052905 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Wyoming, USA - M_C1_S1 DOE Joint Genome Institute (JGI) 3300052905 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 41.10739 -106.15304 415488928 723950 272 60 491 71 Unrestricted 25.18 Metagenome 3300033123 *Microbiome Finished Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung HAN_DAE Chunlab, Inc 3300033123 Metagenome Analysis SPAdes v. 3.8.2 released by JGI data releasing policy No Yes chojc@inha.ac.kr; krmoon518@gmail.com Jang-Cheon Cho; Kira Moon No Environmental Aquatic River Freshwater Unclassified Freshwater 37.6746111 127.3841278 12141905 17775 0 0 0 0 0.0 Metagenome 3300044933 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_6_C DOE Joint Genome Institute (JGI) 3300044933 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 191763683 233889 104 2 126 1 Unrestricted 59.14 Metagenome 3300051786 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Creek water microbial communities from Sandhills, Nebraska, United States - NSL_Bcreek_2020_MMG DOE Joint Genome Institute (JGI) 3300051786 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Creek Freshwater Unclassified Creek water 41.60026 -102.33403 1763155226 2824896 762 31 1106 56 Unrestricted 29.37 Metagenome 7000000091 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 861967750 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000091 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 9332063 20011 0 0 0 0 0.0 Metagenome 3300017924 *Microbiome Permanent Draft Coastal wetland sediment microbial communities from the Mid-Atlantic and Southeast Atlantic Coast of USA, responding to salinity intrusion. Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5 DOE Joint Genome Institute (JGI) 3300017924 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Freshwater sediment 35.9061 -76.1569 504985088 1164216 438 15 866 19 SRX4368758 Unrestricted 4.88 Metagenome 3300000557 *Microbiome Permanent Draft Alkaline sediment microbial communities from Soda lakes and Soda Solonchak soils Alkaline sediment microbial communities from Lake Tanatar, Kulunda Steppe, Russia - 8KL_010_SED DOE Joint Genome Institute (JGI) 3300000557 Metagenome Analysis Yes Yes g.muijzer@uva.nl Gerard Muyzer No Environmental Aquatic Alkaline Non-marine Saline and Alkaline Sediment Alkaline sediment 51.39 79.48 586845807 1214286 607 27 1046 37 SRX1667442 Unrestricted 0.0 Metagenome 3300006441 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human left retroauricular crease microbial communities from NIH, USA - visit 2 of subject 763961826 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300006441 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 20828499 39120 25 2 27 8 SRX024931 0.0 Metagenome 3300041660 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_131 MetaG AgResearch, New Zealand, Mosgeil 3300041660 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1608985513 3459756 364 32 1241 53 0.0 Metagenome 3300042507 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Aug2005-rr0552 DOE Joint Genome Institute (JGI) 3300042507 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1230209635 1985459 401 27 555 43 Unrestricted 17.43 Metagenome 3300048853 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD7 DOE Joint Genome Institute (JGI) 3300048853 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.347657 -119.2808 393769897 541977 87 40 97 40 Unrestricted 67.01 Metagenome 3300049346 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MAF1 DOE Joint Genome Institute (JGI) 3300049346 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 258789184 731719 338 4 607 9 Unrestricted 6.61 Metagenome 3300003404 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD DOE Joint Genome Institute (JGI) 3300003404 Metagenome Analysis Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 329138150 708104 273 50 499 74 SRX2565076 Unrestricted 0.0 Metagenome 3300049917 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Washington, USA - columbiariver1_2019_sed_WHONDRS-S19S_0075 DOE Joint Genome Institute (JGI) 3300049917 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 46.694742 -119.465555 373984968 882441 494 4 1027 10 Restricted 11.02 Metagenome 3300025613 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNTR4_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025613 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 34.65 135.05 410808207 683529 351 0 486 4 SRX2339076 Unrestricted 0.0 Metagenome 3300037845 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_3 DOE Joint Genome Institute (JGI) 3300037845 Metagenome Analysis metaspades v. 3.13.0 Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 3105981256 4862331 483 15 799 22 SRX9140423 Unrestricted 12.86 Metagenome 3300034063 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053 DOE Joint Genome Institute (JGI) 3300034063 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1494396110 2955903 767 94 1172 141 SRX7621646 Unrestricted 11.51 Metagenome 3300049658 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F3_B_0_drought DOE Joint Genome Institute (JGI) 3300049658 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 91077724 200742 224 8 420 19 Unrestricted 12.78 Metagenome 3300039144 *Microbiome Permanent Draft Freshwater microbial communities from various watersheds in Southwestern British Columbia, Canada Freshwater microbial communities from Southwestern British Columbia, Canada - NEG_078 University of British Columbia 3300039144 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 49.0 -123.0 3606037 6734 6 0 7 0 0.0 Metagenome 3300029857 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37292 Beijing Genomics Institute (BGI) 3300029857 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 255473040 332801 235 1 359 4 0.0 Metagenome 3300031418 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLCC.R2 DOE Joint Genome Institute (JGI) 3300031418 Metagenome Analysis spades v. 3.12.0 Yes Yes icelab@berkeley.edu Steven Lindow No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 37.8864 -122.2981 668409544 1145391 515 34 705 51 SRX5658576 Unrestricted 62.84 Metagenome 3300056692 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.5W.13 SIP fraction DOE Joint Genome Institute (JGI) 3300056692 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 161170826 273167 121 26 203 33 Unrestricted 13.94 Metagenome 3300044672 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Roots microbial communities from millet plant in semiarid region near Thies, Senegal - COA3E DOE Joint Genome Institute (JGI) 3300044672 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Unclassified Roots Unclassified Root 14.75 -16.85 809367689 1231549 29 32 59 70 Unrestricted 24.52 Metagenome 3300050554 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_RHK1_4_to_RHK1 DOE Joint Genome Institute (JGI) 3300050554 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.154 -124.211 456094674 842062 206 118 366 210 Unrestricted 25.3 Metagenome 3300005843 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 DOE Joint Genome Institute (JGI) 3300005843 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 6413828248 17979636 4011 298 6584 599 SRX2785270 Unrestricted 0.0 Metagenome 3300058930 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Activated sludge microbial communities from bioreactor in WWTP, Madison, WI, USA - RS_2021-07-01_SampleB DOE Joint Genome Institute (JGI) 3300058930 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.03331 -89.35633 255662264 302838 104 11 126 21 SRX22129487 Unrestricted 10.0 Metagenome 3300039211 *Microbiome Permanent Draft Acid mine drainage microbial biofilm communities from Richmond Mine, California, USA Acid mine drainage biofilm communities from Richmond mine site AB20, Iron Mt, CA, USA - AMDAB200606DS2 University of California, Berkeley 3300039211 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 40.67542 -122.53025 11756699 18309 4 3 14 4 0.0 Metagenome 3300026876 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 58 (SPAdes) DOE Joint Genome Institute (JGI) 3300026876 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 58449354 141199 78 0 146 1 SRX1985062 Unrestricted 0.0 Metagenome 3300001050 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN595 DOE Joint Genome Institute (JGI) 3300001050 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.53 -96.582821 407399 1390 11 0 15 0 SRX1986975 Unrestricted 0.0 Metagenome 3300009948 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 30 mira Center for Advanced Technologies in Genomics, Sao Paulo University 3300009948 Metagenome Analysis mira released per JGI data release policy No Yes joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 65120098 107383 172 4 251 7 0.0 Metagenome 3300021092 *Microbiome Permanent Draft Freshwater microbial communities from Lake Tanganyika, Tanzania Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015021 Mahale Deep Cast 10m DOE Joint Genome Institute (JGI) 3300021092 Metagenome Analysis spades v. 3.10.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater lake -6.1786 29.658 1417698524 2528322 404 67 605 77 SRX4818210 Unrestricted 34.44 Metagenome 3300040349 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from LBJ National Grassland , Southern Plains, TX, USA - CLBJ_040-M-20170413-COMP-DNA1 Battelle Memorial Institute 3300040349 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 33.40123 -97.57 4355119 15866 43 0 65 0 0.0 Metagenome 3300043652 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 362-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043652 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9536 -107.0676 514174783 1237649 435 27 753 38 Unrestricted 7.26 Metagenome 3300022177 *Microbiome Permanent Draft Enriched cultures of PCE-dechlorinating microbial communities from Ithaca, New York, USA Enriched culture of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.S DOE Joint Genome Institute (JGI) 3300022177 Metagenome Analysis spades v. 3.11.1-check Yes Yes rer26@cornell.edu Ruth Richardson No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified defined medium 42.4447 -76.485 268134221 384316 273 3 325 2 SRX4038470 Unrestricted 107.4 Metagenome 3300009068 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG DOE Joint Genome Institute (JGI) 3300009068 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 45.4091 -72.0994 1091261627 2016983 548 183 968 308 SRX2996443 Unrestricted 0.0 Metagenome 3300037796 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site1_salt_MV_4 DOE Joint Genome Institute (JGI) 3300037796 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Tidal flats microbial mat 20.7609 58.6478 961214855 1451484 473 6 700 13 SRX9169511 Unrestricted 19.22 Metagenome 3300020413 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_S200000501 (ERX555962-ERR599092) CEA Genoscope 3300020413 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 35.7593 14.3453 1133158325 2660664 507 22 840 35 0.0 Metagenome 3300000385 *Microbiome Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine microbial community from Cabo Rojo, Puerto Rico - PR CR 10% Liquid 1 DOE Joint Genome Institute (JGI) 3300000385 Metagenome Analysis released based on JGI ITS Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Enviromental 17.951083 -67.193167 210351197 409868 124 12 181 22 Unrestricted 0.0 Metagenome 3300069462 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_047-M-20160822-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069462 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 12816629 41342 60 8 123 17 0.0 Metagenome 3300043021 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - Beaver5Rectum1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043021 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Rectum rectum 49.18 -122.54 56447091 104603 95 9 188 11 SRX8346447 Unrestricted 53.79 Metagenome 7000000187 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from the National Institute of Health, USA - subject 158499257, visit 2 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000187 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 214070692 328287 0 0 0 0 0.0 Metagenome 3300000717 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 68 DOE Joint Genome Institute (JGI) 3300000717 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 13597321 39041 48 0 78 0 SRX4341328 Unrestricted 0.0 Metagenome 3300028541 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 17 Selected contigs with viral hallmark genes 2 Autonomous University of Barcelona 3300028541 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 1699083 2464 0 0 0 0 0.0 Metagenome 3300027482 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A2w-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300027482 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 29167954 98457 82 5 167 4 SRX2576252 Unrestricted 0.0 Metagenome 3300028479 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung D16 DOE Joint Genome Institute (JGI) 3300028479 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Elk feces 38.04 -122.5 144858404 265742 173 37 294 50 SRX5092975, SRX5092976 Unrestricted 0.0 Metagenome 2013515000 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP6 White Creek Site 3 v1 DOE Joint Genome Institute (JGI) 2013515000 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23761787 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.733519 -110.404033 38275783 55998 27 0 42 0 Unrestricted 0.0 Metagenome 3300013968 *Microbiome Permanent Draft Fecal viral communites from wild urban brown rats in Berlin, Germany Fecal viral communites from wild urban brown rats in Berlin, Germany - Mu/10/1787 Freie University Berlin 3300013968 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 52.529611 13.401343 473759 1119 0 0 0 0 SRX616521 0.0 Metagenome 3300029976 *Microbiome Permanent Draft Fecal microbial communities from free-living howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from free-living howler monkeys from Sao Paulo Zoo, Brazil - Ind. 1-2, S4 Reanalysis Center for Advanced Technologies in Genomics, Sao Paulo University 3300029976 Metagenome Analysis metaSPAdes v. 3.12.0 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 114004277 197807 166 6 247 3 0.0 Metagenome 3300029731 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37179 Beijing Genomics Institute (BGI) 3300029731 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 171358544 210892 128 0 187 0 0.0 Metagenome 3300030030 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36007 Beijing Genomics Institute (BGI) 3300030030 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 210235106 257704 182 0 221 0 0.0 Metagenome 3300013915 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100790 University of Pennsylvania 3300013915 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9995757 20121 8 6 18 7 SRX756064 0.0 Metagenome 3300045035 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Plains ecozone, Canada - Lake 04-617 Genome Quebec 3300045035 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 60.596644 -116.262865 1144226148 2333026 424 209 726 347 0.0 Metagenome 3300052932 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Colorado, USA - CP_H3_S2 DOE Joint Genome Institute (JGI) 3300052932 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 39.93904 -105.9437 198522319 353367 264 21 503 43 Unrestricted 15.95 Metagenome 3300008637 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764083206 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008637 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 76669592 139623 51 1 89 3 0.0 Metagenome 3300041964 *Microbiome Permanent Draft Microbial communities from various locations in USA and France Soil crust microbial communities from Green Butte Site near Canyonlands National Park, Moab, Utah, United States - Moab-June2019 DOE Joint Genome Institute (JGI) 3300041964 Metagenome Analysis metaFlye v. 2.5-release released based on JGI ITS Yes Yes cgdaum@lbl.gov; lapennacchio@lbl.gov Christopher Daum; Len Pennacchio No Environmental Terrestrial Soil crust Soil Biological Soil crust 38.0 -109.0 1352353589 1810200 427 4 508 5 SRX10086606, SRX10086607 Unrestricted 0.0 Metagenome 3300026957 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 E1 (SPAdes) DOE Joint Genome Institute (JGI) 3300026957 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 50583563 67386 37 0 35 0 SRX3311489 Unrestricted 0.0 Metagenome 3300050714 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water viral communities from Sandhills, Nebraska, United States - NSL_Smith_2020_V DOE Joint Genome Institute (JGI) 3300050714 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.78581 -102.52354 218752451 562903 61 3 102 5 Unrestricted 159.09 Metagenome 3300040748 *Microbiome Permanent Draft Groundwater microbial community from Coast Range Ophiolite Microbial Observatory, California, USA Groundwater microbial community from Coast Range Ophiolite Microbial Observatory, California, USA - CSWold_6CROd010 Michigan State University 3300040748 Metagenome Analysis IDBA-UD v. 1.1.3-1 released by JGI data releasing policy No Yes lmseyler@gmail.com Lauren Seyler No Environmental Terrestrial Aquifer Deep subsurface Unclassified Groundwater 38.87131 -122.419235 9.8 76 198497807 229460 100 1 135 3 0.0 Metagenome 3300017620 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - LG13-13 University of Michigan 3300017620 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.76324 -84.405 9299393 13586 5 0 5 0 0.0 Metagenome 3300026665 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN588 (SPAdes) DOE Joint Genome Institute (JGI) 3300026665 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.070856 -96.582821 6903973 23088 36 2 59 1 SRX3311850 Unrestricted 0.0 Metagenome 3300042116 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126F_E14_082316_1792 DOE Joint Genome Institute (JGI) 3300042116 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.1836 -97.9974 132876216 406573 284 7 486 7 Unrestricted 6.51 Metagenome 7000000636 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763860675 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000636 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 2411710 4612 0 0 0 0 0.0 Metagenome 3300031811 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - CB11b_Tmax_Bot8 DOE Joint Genome Institute (JGI) 3300031811 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 79.9957 -149.9767 1100511112 2303212 747 87 1212 160 SRX5817148 Unrestricted 12.89 Metagenome 3300027160 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepC_8h DOE Joint Genome Institute (JGI) 3300027160 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 176666155 395671 179 8 326 19 SRX5245417 Unrestricted 16.56 Metagenome 7000000169 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 159672603 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000169 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 73324 116 0 0 0 0 SRX024575, SRX024576 0.0 Metagenome 3300046817 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 soil DOE Joint Genome Institute (JGI) 3300046817 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121519 -123.270589 5.21 1563995854 2450251 411 18 613 26 Unrestricted 13.68 Metagenome 3300041044 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - T4D7 IDBA-UD 60x Baseclear 3300041044 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 28493849 57990 448 364 1757 933 0.0 Metagenome 3300007629 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1554B-3 DOE Joint Genome Institute (JGI) 3300007629 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2871 -123.9424 271285109 534346 314 76 568 113 SRX2753733 Unrestricted 0.0 Metagenome 3300005937 *Microbiome Permanent Draft Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 DOE Joint Genome Institute (JGI) 3300005937 Metagenome Analysis SPADES v3.5.0 Released upon Christa's approval Yes Yes nnivanova@lbl.gov, NNIvanova@lbl.gov; filipagodoyvitorino@gmail.com; fgodoyvitorino@gmail.com Natasha Ivanova, Natalia Ivanova; Filipa Godoy-Vitorino; Filipa Godoy Vitorino No Host-associated Plants Rhizosphere Roots Unclassified Tabebuia heterophylla rhizosphere 18.402889 -66.050054 2338508197 5251471 954 92 1930 136 SRX2562475 0.0 Metagenome 3300032314 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains Ecozone, Canada - Lake 08-219 Genome Quebec 3300032314 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.693927 -76.46573 656376655 1312608 384 89 632 210 0.0 Metagenome 3300010354 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA DOE Joint Genome Institute (JGI) 3300010354 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes bcampb7@clemson.edu Barbara Campbell Yes 29703736 Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 39.2637 -76.0017 2908194785 6293646 1640 296 2513 592 SRX2526850 Unrestricted 0.0 Metagenome 3300046531 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere DOE Joint Genome Institute (JGI) 3300046531 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1209 -123.2697 778578729 1272357 240 85 424 91 Unrestricted 13.53 Metagenome 3300031537 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-30 DOE Joint Genome Institute (JGI) 3300031537 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.759 -70.891 725896654 1559445 663 5 1092 5 SRX5358017 Unrestricted 9.42 Metagenome 3300027815 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300027815 Metagenome Analysis spades v. 3.11.1 Yes Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.292222 -73.604444 1258492210 2186860 750 41 1239 95 SRX3307785 Unrestricted 0.0 Metagenome 3300040238 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Woodworth, Northern Plains, ND, USA - WOOD_045-M-20170711-COMP-DNA1 Battelle Memorial Institute 3300040238 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12823 -99.24136 7369948 20981 20 2 42 6 0.0 Metagenome 3300048126 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_140219.NP1 DOE Joint Genome Institute (JGI) 3300048126 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 710998327 1603130 542 92 741 157 Unrestricted 15.56 Metagenome 3300044853 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - MERA-8-26-19 DOE Joint Genome Institute (JGI) 3300044853 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.1958 -120.5613 507136949 1350131 674 45 1220 75 Restricted 7.65 Metagenome 3300038943 *Microbiome Permanent Draft Marine sediment microbial communities from Mesquite Bay, Texas, USA Marine sediment microbial communities from Mesquite Bay, Texas, USA - MB3D 9-12 cm Michigan State University 3300038943 Metagenome Analysis MegaHit v. 1.1.1 released by JGI data releasing policy No Yes acidophile@gmail.com Brett Baker No Environmental Aquatic Sediment Marine Unclassified marine sediment 28.147 -96.8455 401983836 439652 53 0 41 0 0.0 Metagenome 3300029114 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021214-33 Beijing Genomics Institute (BGI) 3300029114 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 155301847 201772 119 0 178 0 0.0 Metagenome 3300028764 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E1_4 DOE Joint Genome Institute (JGI) 3300028764 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 321343700 817934 252 25 406 47 SRX5356664 Unrestricted 0.0 Metagenome 3300038324 *Microbiome Permanent Draft Hypersaline water viral communities from Lake Tyrrell, Australia Hypersaline water viral communities from Lake Tyrrell, Australia - 2007At2 University of California, Berkeley 3300038324 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline water -35.309 142.795 11085819 29445 0 0 0 0 0.0 Metagenome 3300038751 *Microbiome Finished Marine sponge bacterial communities from Western Mediterranean Sea, Spain Marine sponge bacterial communities from Western Mediterranean Sea, Spain - HC Beijing Novogene Bioinformatics Technology Co., Ltd 3300038751 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy No Yes leigarate@gmail.com Leire Garate No Host-associated Porifera Unclassified Sponge Unclassified Marine 41.56 2.55 247453638 446399 48 27 101 44 0.0 Metagenome 3300003081 *Microbiome Permanent Draft Acid mine drainage microbial communities from Carnoules, Gard, France Acid Mine Drainage microbial communities from Carnoules, Gard, France, bin 4 CEA Genoscope 3300003081 Metagenome Analysis Made public because these are downloaded from Genbank No Yes ipagani@lbl.gov Pelletier,E., Ionna Pagani No Environmental Aquatic Groundwater Freshwater Contaminated Acid mine drainage 43.303 6.188 2701983 2749 0 0 0 0 0.0 Metagenome 3300024913 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 81_HOW10 (SPAdes) DOE Joint Genome Institute (JGI) 3300024913 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 44599248 60445 29 2 32 4 SRX2721063 Unrestricted 0.0 Metagenome 3300047667 *Microbiome Permanent Draft Seawater and ice microbial communities from Arctic Ocean Melted sea ice microbial communities from Arctic Ocean - MOSAiC PS122_413 DOE Joint Genome Institute (JGI) 3300047667 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Sea ice 87.4122 93.2151 1305479295 1790065 447 193 568 253 Unrestricted 33.89 Metagenome 3300057054 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M2L_60_62 DOE Joint Genome Institute (JGI) 3300057054 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0084363 -81.5683388 1301200878 2087027 621 0 1016 1 Unrestricted 12.33 Metagenome 3300027868 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_22 DOE Joint Genome Institute (JGI) 3300027868 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Inlet Marine Unclassified seawater 50.0528611 -123.8211389 1319774036 3096178 916 28 1577 43 SRX5243947 Unrestricted 9.08 Metagenome 3300035643 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Loreto, Peru - QUI85 DOE Joint Genome Institute (JGI) 3300035643 Metagenome Analysis spades v. 3.13.0 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Unclassified peatland -3.8385 -73.3213 2357143418 4882379 996 15 2063 7 SRX8136469 Unrestricted 15.13 Metagenome 3300071026 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_043-M-20170621-COMP-DNA1 3300071026 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 3076429 10263 19 3 36 6 0.0 Metagenome 3300007645 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS879 Marine Biological Laboratory 3300007645 Metagenome Analysis Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow diffuse flow hydrothermal vent 18.375 -81.797 6.91 7504040 9815 0 0 2 0 0.0 Metagenome 3300035196 *Microbiome Finished Coastal sediment microbial communities from Western Antarctica Coastal sediment microbial communities from Western Antarctica - 5_event98 Megahit 98 Michigan State University 3300035196 Metagenome Analysis Megahit v. 1.1 released by Deric Learman No Yes deric.learman@cmich.edu Deric Learman No Environmental Aquatic Coastal Marine Sediment marine sediment -76.5502 170.0004 1165658550 2497995 463 107 987 182 0.0 Metagenome 3300070641 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_002-M-20200603-COMP-DNA1 3300070641 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 15981383 50887 72 7 121 10 0.0 Metagenome 3300041553 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_138 MetaG AgResearch, New Zealand, Mosgeil 3300041553 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 3609245636 7050724 293 36 1398 71 0.0 Metagenome 3300048672 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Sawmill Brook, Burlington, Massachusetts, USA - sawmillbrook_2019_sw_WHONDRS-S19S_0072 (version 2) DOE Joint Genome Institute (JGI) 3300048672 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 42.5233 -71.1854 299737741 534238 344 49 659 82 Unrestricted 0.0 Metagenome 3300021448 *Microbiome Permanent Draft Longitudinal study of halite endolithic microbial communities Halite endolithic microbial communities from Salar Grande, Atacama Desert, Chile - SG1-2016-02 Johns Hopkins University 3300021448 Metagenome Analysis metaSPAdes v.3.11.1 released by JGI data releasing policy Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Halite pinnacle -20.95319 -70.019951 790976118 1164211 159 12 276 9 0.0 Metagenome 3300042974 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_CSTR_216 (downsampled for mapping) DOE Joint Genome Institute (JGI) 3300042974 Metagenome Analysis metaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 11658708 11902 12 0 10 0 SRX12727510, SRX12727511, SRX12727512 Unrestricted 0.0 Metagenome 3300042392 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME03Jul2013-rr0864 DOE Joint Genome Institute (JGI) 3300042392 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 531012320 868333 214 30 301 49 Unrestricted 20.52 Metagenome 3300029241 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021292-39 Beijing Genomics Institute (BGI) 3300029241 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 177118211 234703 160 1 239 1 0.0 Metagenome 3300051209 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Altamaha River, Georgia, USA - NASQAN2015_165 DOE Joint Genome Institute (JGI) 3300051209 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 637027999 1414500 453 127 841 189 Restricted 0.0 Metagenome 3300056735 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain - Blanes_Viral DOE Joint Genome Institute (JGI) 3300056735 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Coastal Marine Unclassified Seawater 41.6833 2.8 544963555 826755 0 0 0 0 Restricted 0.0 Metagenome 3300020300 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000959 (ERX555977-ERR598981) CEA Genoscope 3300020300 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -12.9057 -96.155 186787944 408414 195 4 332 8 0.0 Metagenome 3300012631 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01002 Weill Cornell Medical College 3300012631 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.6 -73.81 35153478 54463 14 1 22 0 SRX822964 0.0 Metagenome 3300050131 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim2 60-64 DOE Joint Genome Institute (JGI) 3300050131 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.353634 19.04734 647624857 994862 185 4 273 6 Restricted 12.59 Metagenome 3300045972 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Microbial mat bacterial communities from freshwater pond, North Slope, Alaska, United States - TFS_Pond3_18June2019 DOE Joint Genome Institute (JGI) 3300045972 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes demerson@bigelow.org David Emerson No Environmental Aquatic Pond Freshwater Unclassified freshwater ferric oxide microbial mat 68.6243 -149.6011 1634183023 2658385 828 298 1181 434 Unrestricted 18.33 Metagenome 3300007057 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina ""control"", cg17ic" University of New South Wales 3300007057 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au, e.botte@aims.gov.au; n.webster@aims.gov.au Nicole Webster, Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Cinachyra sp. (marine sponge) -9.828217 150.820517 72073849 162980 44 1 81 3 0.0 Metagenome 3300006140 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t14_692M_control - microbial_metagenome University of Texas Southwestern Medical Center 3300006140 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 204233243 403153 149 1 183 3 0.0 Metagenome 2170459008 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect DNA Tissue lysis 0-10cm 454 Life Sciences 2170459008 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.804241 -0.372114 389170237 1047395 406 22 810 41 0.0 Metagenome 3300039377 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 1_M Beijing Genomics Institute (BGI) 3300039377 Metagenome Analysis Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 137015994 173131 87 0 146 0 ERX490994 0.0 Metagenome 3300012096 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG DOE Joint Genome Institute (JGI) 3300012096 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Saprolite Vadose zone soil 39.7291 -123.6419 2685513678 5537801 1344 45 2379 78 SRX3373050 Unrestricted 0.0 Metagenome 3300013492 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01057 Weill Cornell Medical College 3300013492 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.68 -73.95 22743066 38758 18 1 23 1 SRX823019 0.0 Metagenome 3300037454 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_011 DOE Joint Genome Institute (JGI) 3300037454 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -19.6574 146.8351 1302940656 2021679 1082 19 1763 22 SRX9161801 Unrestricted 14.64 Metagenome 3300027461 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-E (SPAdes) DOE Joint Genome Institute (JGI) 3300027461 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.33 31831772 88291 113 3 167 3 SRX1991443 Unrestricted 0.0 Metagenome 3300001611 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF023 DOE Joint Genome Institute (JGI) 3300001611 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 319045 849 12 4 22 7 SRX2014345 Unrestricted 0.0 Metagenome 3300069481 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_032-M-20170802-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069481 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 31249130 98184 112 5 187 7 0.0 Metagenome 3300037829 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Freshwater microbial communities from Lake Michigan, Michigan, United State - MI_BH16_G04 metaG DOE Joint Genome Institute (JGI) 3300037829 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.6 -86.9166 457507037 959253 236 9 346 12 SRX9146680 Unrestricted 13.08 Metagenome 3300001476 *Microbiome Permanent Draft Sheep rumen microbial communities from New Zealand from high and low methane emitting sheep Sheep rumen microbial communities from New Zealand - Rank33_high DOE Joint Genome Institute (JGI) 3300001476 Metagenome Analysis Velvet Released because these are assemblies from SRA data No Yes janine.kamke@agresearch.co.nz, janine.kamke@uni-wuerzburg.de Janine Kamke No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen -40.352 175.608 156977655 328453 414 53 874 93 0.0 Metagenome 3300003197 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment Column5K5-0 454 Life Sciences 3300003197 Metagenome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.342219 40.479289 6-8 0 0 0 0 0 0 0.0 Metagenome 3300038511 *Microbiome Permanent Draft Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China - SA1 v2 Sun Yat-Sen University 3300038511 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy No Yes yuxiaoli92@163.com Xiaoli Yu No Environmental Aquatic Intertidal zone Marine Mangrove sediment mangrove sediment 23.45 116.43 86256229 120093 51 6 97 7 0.0 Metagenome 3300042670 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A36 University of California, Davis 3300042670 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 201634033 571476 275 5 526 10 0.0 Metagenome 3300038837 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Natural salt marsh sediment microbial communities from Abbotts Hall, United Kingdom - S AHNM 1A University of York 3300038837 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Natural salt marsh sediment 51.7865 0.86085 37141041 107177 105 1 157 0 0.0 Metagenome 3300007292 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 765094712 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007292 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 64636666 78940 57 0 93 0 0.0 Metagenome 7000000259 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 764143897 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000259 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 4760146 6516 0 0 0 0 0.0 Metagenome 3300027250 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1557A-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027250 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2763 -124.0055 126138679 274921 150 5 243 12 SRX2753742 Unrestricted 17.45 Metagenome 3300004186 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG18_big_fil_WC_8/21/14_2.50 DOE Joint Genome Institute (JGI) 3300004186 Metagenome Analysis MEGAHIT v. 0.2.0 revert back to private per Christa Yes Yes jbanfield@berkeley.edu, jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield, Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 1047756263 2526390 1446 147 2502 320 SRX3348988 Unrestricted 0.0 Metagenome 3300025342 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 1 Metagenome Rauer1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025342 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli Yes 31253704 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.8136 77.9341 27650198 34573 6 0 13 0 SRX2747269 Unrestricted 0.0 Metagenome 3300046154 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - HIL8-9-26-19 DOE Joint Genome Institute (JGI) 3300046154 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.4077 -120.8316 766745975 1546856 376 95 654 154 Restricted 0.0 Metagenome 3300021167 *Microbiome Permanent Draft Freshwater planktonic and plastic biofilm microbial communities in Lake Erie, USA Freshwater plastic biofilm microbial communities near Erie Pennsylvania WWTP outflow, Lake Erie, USA - MD2014-0189A University of Michigan 3300021167 Metagenome Analysis Megahit v1.1.1 released by JGI data releasing policy No Yes gumm@umich.edu Jordan Gumm No Environmental Aquatic Lake Freshwater Unclassified lake plastic biofilm near wastewater outflow 42.15 -80.06 316687842 328462 86 15 86 11 0.0 Metagenome 3300035320 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Leptogorgia sarmentosa from Algarve, Portugal - LS07H Euk Molecular Research LP (MR DNA) 3300035320 Metagenome Analysis Metawrap workflow v. 1.0.5 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 42249746 42723 1 1 1 1 0.0 Metagenome 3300021841 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t7i015 Shell Corporation 3300021841 Metagenome Analysis idba_ud released by JGI data releasing policy Yes Yes nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis No Environmental Terrestrial Ranch Soil Agricultural land soil 52.172047 -113.738964 3481515598 14774726 1465 42 2829 84 0.0 Metagenome 2044078000 *Microbiome Permanent Draft Switchgrass, Maize and Miscanthus rhizosphere microbial communities from University of Illinois Energy Farm, Urbana, IL Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL University of Illinois, Urbana-Champaign 2044078000 Metagenome Analysis No Yes lixz@illinois.edu Xiangzhen Li No Environmental Terrestrial Unclassified Soil Agricultural land Switchgrass, Maize and Miscanthus rhizosphere 40.109 -88.204 43495537 124423 41 0 70 0 0.0 Metagenome 3300022344 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1BM3 JM24 AGRF 3300022344 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 37541183 64160 19 3 30 2 0.0 Metagenome 3300036648 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 E-3-S DOE Joint Genome Institute (JGI) 3300036648 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0467 275483670 674970 328 17 595 46 SRX8160426 Unrestricted 6.58 Metagenome 3300022923 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (version 2) DOE Joint Genome Institute (JGI) 3300022923 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 896316461 1617573 445 74 826 117 SRX4068617 Unrestricted 31.69 Metagenome 3300036356 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C4-3C DOE Joint Genome Institute (JGI) 3300036356 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 61487191 198784 151 5 282 6 SRX8786733 Unrestricted 4.31 Metagenome 3300011627 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00821 Weill Cornell Medical College 3300011627 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.98 23471746 43145 23 0 41 0 SRX822787 0.0 Metagenome 3300071061 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_036-O-20190104-COMP-DNA2 3300071061 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 14774507 47223 53 4 81 5 0.0 Metagenome 3300002120 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 DOE Joint Genome Institute (JGI) 3300002120 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 635166846 1594156 918 2 1636 5 SRX1991817 Unrestricted 0.0 Metagenome 3300044251 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 177-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044251 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.8563 -107.0972 455120493 1178971 409 81 789 124 Unrestricted 7.04 Metagenome 3300022669 *Microbiome Permanent Draft Carpinteria Salt Marsh Metagenomes 2014 to 2017 Sediment microbial communities from marsh channel in Carpinteria, CA, United States - IS B University of California, Irvine 3300022669 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Aquatic Intertidal zone Marine Sediment Sediment 34.401 -119.534 80674591 85506 28 4 26 4 0.0 Metagenome 3300005857 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring and microbial mat streamer communities from Octopus Spring Streamers, Yellowstone National Park, USA - OCT_B (SPADES assembly) (version 2) DOE Joint Genome Institute (JGI) 3300005857 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, binskeep@montana.edu; jim.fredrickson@pnnl.gov Natasha Ivanova, William P. Inskeep; Jim Fredrickson Yes 26140529 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring and microbial mat streamer 44.376 -110.69 8.6 118250478 224129 53 0 76 0 SRX2553561 Unrestricted 0.0 Metagenome 3300037606 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Extra Lake-2 #414 DOE Joint Genome Institute (JGI) 3300037606 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4481 78.2712 354886230 690943 189 46 243 68 SRX9173485 Unrestricted 15.6 Metagenome 3300007714 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 763678604 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007714 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 171578743 246863 117 2 175 2 0.0 Metagenome 3300017585 *Microbiome Permanent Draft Fecal microbial communities from free-living howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from free-living howler monkeys from Sao Paulo Zoo, Brazil - Ind. 1-2, S4 Center for Advanced Technologies in Genomics, Sao Paulo University 3300017585 Metagenome Analysis SPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 82016272 141095 134 3 192 5 0.0 Metagenome 3300047540 *Microbiome Permanent Draft Floating fern leaf microbial communities from various locations Floating fern leaf microbial communities from New Orleans, Louisiana, United States - 3031_IRRI DOE Joint Genome Institute (JGI) 3300047540 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dave.armitage@gmail.com David Armitage No Host-associated Plants Phylloplane/Leaf Phyllosphere Endophytes Leaf 29.9997 -90.0962 38486390 40109 12 6 12 7 Unrestricted 773.93 Metagenome 3300056702 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.4C.8 SIP fraction DOE Joint Genome Institute (JGI) 3300056702 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 182795433 340844 119 3 198 5 Unrestricted 28.11 Metagenome 3300026511 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 27D DOE Joint Genome Institute (JGI) 3300026511 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 330625125 627587 218 15 311 34 SRX4458826 Unrestricted 19.89 Metagenome 3300029006 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 281_4M Beijing Genomics Institute (BGI) 3300029006 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 63415215 75360 60 1 55 0 ERX491068 0.0 Metagenome 3300044460 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_267 DOE Joint Genome Institute (JGI) 3300044460 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 584320874 1633828 667 14 1228 23 Unrestricted 7.07 Metagenome 3300012129 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT530_2 DOE Joint Genome Institute (JGI) 3300012129 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9231 -106.9513 94349887 231110 220 33 456 49 SRX3368818 Unrestricted 0.0 Metagenome 3300046373 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA014b-BCH DOE Joint Genome Institute (JGI) 3300046373 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6792 -83.4776 624306505 1329286 491 99 757 168 Unrestricted 10.86 Metagenome 3300069392 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Moab, Southern Rockies & Colorado Plateau, UT, USA - MOAB_046-M-20170523-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069392 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.24833 -109.38827 35881443 110935 120 3 234 3 0.0 Metagenome 3300043271 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from California, United States - Warm Spring A (WSA_S4) (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043271 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified Desert spring 37.2656 -118.2713 7.62 405195547 610907 167 10 292 16 SRX9470712 Unrestricted 63.27 Metagenome 3300013381 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01500 Weill Cornell Medical College 3300013381 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.99 30415872 48170 33 0 29 0 SRX823376 0.0 Metagenome 3300026837 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T2_25-Nov-14 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026837 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 36124541 115306 102 8 174 34 SRX2838882 Unrestricted 0.0 Metagenome 3300009613 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3737_250 DOE Joint Genome Institute (JGI) 3300009613 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic 6.4994 -48.0 48910156 91937 46 5 53 11 SRX2753933 Unrestricted 0.0 Metagenome 3300047296 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Rio Grande River, Texas, USA - NASQAN2016_179 DOE Joint Genome Institute (JGI) 3300047296 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 25.8767 -97.4544 23426536 60987 64 22 110 25 Unrestricted 153.33 Metagenome 3300048847 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD1 DOE Joint Genome Institute (JGI) 3300048847 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.347657 -119.2808 362229521 489745 35 63 54 65 Unrestricted 47.13 Metagenome 3300020009 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - L2s1 DOE Joint Genome Institute (JGI) 3300020009 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.8826 -106.9101 153882682 349763 220 18 459 30 SRX3958590, SRX3958589 Unrestricted 0.0 Metagenome 3300034957 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_2 DOE Joint Genome Institute (JGI) 3300034957 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 39.6589 -79.9058 632602803 1756771 717 63 1347 118 SRX8289235 Unrestricted 6.56 Metagenome 3300028648 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Activated sludge microbial communities from bioreactor in Nijmegen, Gelderland, Netherland - NOB reactor DOE Joint Genome Institute (JGI) 3300028648 Metagenome Analysis spades v. 3.11.1 Yes Yes twoyke@lbl.gov Tanja Woyke No Engineered Bioreactor Activated sludge Aerobic Unclassified activated sludge 51.82 5.87 573003398 832411 185 16 277 24 SRX7098281 Unrestricted 44.43 Metagenome 3300025068 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Little Hot Creek, USA to study Microbial Dark Matter (Phase II) - LHC4sed_replicate (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025068 Metagenome Analysis spades v. 3.11.1 Yes Yes brian.hedlund@unlv.edu; rstepanauskas@bigelow.org Brian Hedlund; Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring 37.6906 -118.8442 6.83 145292550 280398 122 0 142 2 SRX2753915 Unrestricted 0.0 Metagenome 3300053178 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere DOE Joint Genome Institute (JGI) 3300053178 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.120901 -123.269789 1050453078 1836119 283 139 444 191 Unrestricted 21.8 Metagenome 3300045779 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - G2-R3-A DOE Joint Genome Institute (JGI) 3300045779 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3569 19.0504 359256458 759465 219 28 339 44 Unrestricted 7.5 Metagenome 3300011983 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Aquatic prokaryotic and eukaryotic communities from a canal in New York, USA: aquatic canal water -GCSS-10 Weill Cornell Medical College 3300011983 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Unclassified Canal Unclassified Aquatic canal 40.67 -73.99 117719696 325411 208 15 378 25 SRX823484 0.0 Metagenome 3300025015 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Contaminated groundwater microbial communities from Rifle, Colorado, USA - Rifle Groundwater A1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025015 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 26083755 Environmental Aquatic Groundwater Deep subsurface Contaminated Contaminated groundwater 39.53 -107.78 396276413 727337 616 8 974 12 SRX1668018, SRX764703 Unrestricted 0.0 Metagenome 3300028356 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF #359 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028356 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 48838018 77920 18 2 25 1 SRX3241971 Unrestricted 0.0 Metagenome 3300022687 *Microbiome Permanent Draft Carpinteria Salt Marsh Metagenomes 2014 to 2017 Marine microbialite microbial communities from marsh intertidal zone in Carpinteria, CA, United States - L University of California, Irvine 3300022687 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Aquatic Intertidal zone Marine Microbialites Microbialites 34.401 -119.534 57898031 57443 14 0 15 0 0.0 Metagenome 3300041472 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - FS5_HPG_2 DOE Joint Genome Institute (JGI) 3300041472 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.5324 -110.7974 216741549 351235 103 0 149 0 SRX10108943 Unrestricted 496.83 Metagenome 3300029843 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - Stool sample from british twins Beijing Genomics Institute (BGI) 3300029843 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 176466355 244801 177 0 242 0 0.0 Metagenome 3300022408 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL3WBGP2 JM83 AGRF 3300022408 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996531 115.533257 49367934 83173 35 1 56 3 0.0 Metagenome 3300042888 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME05May2012-rd0563 DOE Joint Genome Institute (JGI) 3300042888 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1155263447 1709389 218 31 274 45 Unrestricted 27.02 Metagenome 3300033977 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75 DOE Joint Genome Institute (JGI) 3300033977 Metagenome Analysis spades v. 3.13.0 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Unclassified peatland -4.0712 -73.2029 1157227402 2299026 494 9 941 6 SRX7525141 Unrestricted 16.99 Metagenome 3300049711 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - D23_A_BS (version 2) DOE Joint Genome Institute (JGI) 3300049711 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 290364948 657663 590 30 1250 45 Unrestricted 0.0 Metagenome 3300019474 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 10 Autonomous University of Barcelona 3300019474 Metagenome Analysis SPAdes 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 7689739 14407 18 0 20 1 0.0 Metagenome 3300025948 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLC_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025948 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.209923 -122.033409 145908470 314595 235 2 350 4 SRX7225232 Unrestricted 0.0 Metagenome 3300005731 *Microbiome Permanent Draft Microbial degradation of oil Seawater microbial communities from Vineyard Sound, MA, USA - succinate ammended T14 University of Wisconsin, Madison 3300005731 Metagenome Analysis velvet released per JGI data release policy No Yes rsimiste@haverford.edu, rlsimister@gmail.com rachel simister, Rachel Simister No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.4417 -70.7744 89160773 152681 180 0 282 0 0.0 Metagenome 3300005976 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Section #4 (SPADES assembly) (version 2) DOE Joint Genome Institute (JGI) 3300005976 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, jim.fredrickson@pnnl.gov Natasha Ivanova, Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.973481 -119.476345 73404319 106056 103 9 157 7 SRX3311905 Unrestricted 0.0 Metagenome 7000000677 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765701615 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000677 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 121268177 229908 0 0 0 0 0.0 Metagenome 3300002396 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 13OCT2010 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002396 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 47212161 121385 87 21 155 36 SRX1989294 Unrestricted 0.0 Metagenome 3300031576 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25 DOE Joint Genome Institute (JGI) 3300031576 Metagenome Analysis spades v. 3.12.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Groundwater Deep subsurface Cave microbial mat biofilm 38.1667 -79.633 2688849188 4912229 1400 11 2190 16 SRX5338620, SRX5338619 Unrestricted 0.0 Metagenome 3300007554 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.709 DOE Joint Genome Institute (JGI) 3300007554 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 261735338 518460 241 35 357 75 SRX2753567 Unrestricted 0.0 Metagenome 3300014593 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01341 Weill Cornell Medical College 3300014593 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.84 -73.83 15745533 29403 9 0 10 0 SRX823281 0.0 Metagenome 3300026943 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A3-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300026943 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 62112177 177286 115 2 210 1 SRX1990504 Unrestricted 0.0 Metagenome 3300008411 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 159753524 replicate 1 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008411 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 2328646 2614 1 0 1 0 0.0 Metagenome 3300040433 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Mid-Atlantic, VA, USA - BLAN_038-M-20170714-COMP-DNA1 Battelle Memorial Institute 3300040433 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Farm Terrestrial soil 39.06026 -78.07164 4137155 13295 45 5 74 2 0.0 Metagenome 3300065627 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 812 in Tilley, Alberta, Canada - S00JY_0338 Microbiome Insights 3300065627 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 50.2538415 -111.39339 58313669 88328 53 1 110 1 0.0 Metagenome 3300008676 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit number 3 of subject 159753524 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008676 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 114039564 144785 92 0 125 0 0.0 Metagenome 3300051663 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Lindberg, Bavaria, Germany - BW_CL_010D DOE Joint Genome Institute (JGI) 3300051663 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 49.039623 13.315806 825519246 1894137 364 14 694 20 Unrestricted 9.0 Metagenome 3300026751 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A2w-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026751 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 24285283 76788 114 3 182 4 SRX1991184 Unrestricted 0.0 Metagenome 3300036764 *Microbiome Permanent Draft Microbial communities from various locations in USA and France Sewage microbial communities from WWTP in Marseille, France - spike2 DOE Joint Genome Institute (JGI) 3300036764 Metagenome Analysis metaspades v. 3.13.0 Yes Yes twoyke@lbl.gov; lapennacchio@lbl.gov Tanja Woyke; Len Pennacchio No Engineered WWTP Raw wastewater Influent Municipal and sewage sewage 43.11 5.95 1193300155 1784421 769 34 1141 34 SRX8289090 Unrestricted 11.73 Metagenome 3300026324 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0927_05_40cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026324 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 714678204 1279388 409 14 806 17 SRX2520361 Unrestricted 0.0 Metagenome 3300064766 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 592 in High Prairie, Alberta, Canada - S00JY_0628 Microbiome Insights 3300064766 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 55.24151489 -116.2510406 50186396 74599 37 0 78 0 0.0 Metagenome 3300026063 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026063 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.198971 -122.026955 47595921 129053 119 1 227 1 SRX7187018 Unrestricted 0.0 Metagenome 3300020155 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L239-10m DOE Joint Genome Institute (JGI) 3300020155 Metagenome Analysis spades v. 3.10.1 Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.663 -93.723 442195760 1003364 313 61 611 136 SRX3984565 Unrestricted 28.51 Metagenome 3300010207 *Microbiome Permanent Draft Phototrophic microbial communities Littoral zone phototrophic microbial communities from Lake Waban, Wellesley, MA - FC X16C Marine Biological Laboratory 3300010207 Metagenome Analysis CLC released per JGI data release policy No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Lake Freshwater Sediment littoral 42.2876 -71.30117 65435588 78705 15 0 31 0 0.0 Metagenome 3300021243 *Microbiome Permanent Draft Environmental DNA from river Freshwater microbial communities from Jinzu River in Toyama Prefecture, Japan-20170104_2, 0.2 Toyama Prefectural University 3300021243 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic River Freshwater Unclassified freshwater 36.59547 137.18744 93340018 282657 40 1 73 6 0.0 Metagenome 3300060427 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210604_08_01 DOE Joint Genome Institute (JGI) 3300060427 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 393183687 592611 198 99 241 125 Unrestricted 24.45 Metagenome 3300029937 *Microbiome Permanent Draft Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong - Raw_water_201207B University of Hong Kong 3300029937 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Drinking water Freshwater Unclassified Drinking water treatment plant 78487548 194015 89 5 195 14 SRX390518 0.0 Metagenome 3300011893 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S01-05-R University of California, Los Angeles 3300011893 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 51539479 81101 41 0 55 0 SRX861042 0.0 Metagenome 3300003239 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK08-D DOE Joint Genome Institute (JGI) 3300003239 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 233245 774 24 3 41 6 SRX2575483 Unrestricted 0.0 Metagenome 3300022801 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R2 Version 2 University of New South Wales 3300022801 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 69134504 116278 41 1 55 2 0.0 Metagenome 3300004110 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_100m_DNA DOE Joint Genome Institute (JGI) 3300004110 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 518040426 1309529 466 32 811 60 Unrestricted 0.0 Metagenome 3300042481 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME07May2018-rr0731 DOE Joint Genome Institute (JGI) 3300042481 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 483063705 793903 179 116 277 162 Unrestricted 19.77 Metagenome 3300018427 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 2, Chloramphenicol DOE Joint Genome Institute (JGI) 3300018427 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4148 -119.8405 2270436337 4053072 4170 2153 6491 3805 SRX3963289 Unrestricted 11.04 Metagenome 3300027426 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A5-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300027426 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 12490882 43229 72 5 110 9 SRX1991126 Unrestricted 0.0 Metagenome 3300031395 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #490 DOE Joint Genome Institute (JGI) 3300031395 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 262122813 497582 100 25 119 44 SRX5649481 Unrestricted 62.35 Metagenome 3300002575 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Freshwater sediment microbial communities from Taif River, Saudi Arabia - Upstream of discharge Sample CS2-5 454 Life Sciences 3300002575 Metagenome Analysis No Yes lidong460@gmail.com Dong Li No Environmental Aquatic River Freshwater Sediment Freshwater sediment 21.34346 40.479247 6-8 0 0 0 0 0 0 0.0 Metagenome 3300015288 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_01AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015288 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 127520474 240249 21 45 25 45 SRX3923909 Unrestricted 9.88 Metagenome 3300048933 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_4_E (version 2) DOE Joint Genome Institute (JGI) 3300048933 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 182298867 225318 118 1 135 2 Restricted 0.0 Metagenome 2051223004 *Microbiome Permanent Draft Human fecal microbial communities from Orebro University Hospital, Sweden, of individuals with Crohns disease Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10372 University of Maryland School of Medicine 2051223004 Metagenome Analysis released per JGI data release policy No Yes cmfraser@som.umaryland.edu Claire Fraser No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 59.274717 15.230656 19629365 31706 0 0 0 0 0.0 Metagenome 3300013230 *Microbiome Permanent Draft Marine hypoxic microbial communities from the Gulf of Mexico, USA Marine hypoxic microbial communities from the Gulf of Mexico, USA - 10m_Station5_GOM_Metagenome Georgia Institute of Technology 3300013230 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 110998731 264667 130 3 196 7 SRX958529 0.0 Metagenome 3300014119 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room spacecraft assembly facility microbial communities from NASA Jet Propulsion Laboratory, California, USA - Floor swab, replicate B SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300014119 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1991 -118.1715 1930542 7081 3 0 1 0 Unrestricted 0.0 Metagenome 3300000911 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Section #5 DOE Joint Genome Institute (JGI) 3300000911 Metagenome Analysis Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.973481 -119.476345 48989163 97724 88 8 142 14 SRX3311906 Unrestricted 0.0 Metagenome 3300017439 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12SEP2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017439 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 237535913 473599 165 243 279 462 SRX3926419 Unrestricted 6.29 Metagenome 3300008122 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample HABS-E2014-0124-100-LTR University of Michigan 3300008122 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7635 -83.3309 8.042 580916122 795578 95 65 135 69 0.0 Metagenome 3300030248 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces viral communities from colorectal cancer patient in Boston, USA - MG100078 University of Michigan 3300030248 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 42.36 -71.06 3165842 5997 6 0 22 0 0.0 Metagenome 3300035029 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - T7-0 Autonomous University of Barcelona 3300035029 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 97958729 401073 709 0 1395 0 0.0 Metagenome 3300013871 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In4-11 gowning area SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300013871 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1 -118.1 87905619 129937 54 10 79 16 Unrestricted 0.0 Metagenome 7000000599 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763961826 replicate 1 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000599 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 72135333 126539 0 0 0 0 0.0 Metagenome 3300027590 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027590 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 291299644 704756 207 59 466 86 SRX3314127 Unrestricted 0.0 Metagenome 3300002731 *Microbiome Permanent Draft Mangrove soil microbial communities from Brazil, analyzing biochemical cycles METATRANSCRIPTOMICS AND GENOMIC CONTEXT IN MICROBIAL COMMUNITIES INVOLVED IN THE BIOGEOCHEMICAL CYCLES IN MANGROVES 3300002731 Metagenome Analysis released by JGI data releasing policy No Yes dias147@gmail.com Armando Dias No Environmental Terrestrial Sand Soil Unclassified Mangrove soil 6 6375540 5907 0 0 0 0 0.0 Metagenome 3300007552 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.571 DOE Joint Genome Institute (JGI) 3300007552 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 181454789 350094 254 89 379 145 SRX2753568 Unrestricted 0.0 Metagenome 7000000301 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764588959 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000301 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 49333657 85615 0 0 0 0 0.0 Metagenome 3300005396 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - site 2 B6 (version 4) (version 4) DOE Joint Genome Institute (JGI) 3300005396 Metagenome Analysis HGAP3 v. smrtanalysis-2.2.0.133377 Yes Yes rmkelly@ncsu.edu Robert Kelly No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6102 -110.4387 6036257 6476 9 0 9 0 SRX2554348, SRX2554349, SRX2554347, SRX2554354, SRX2554350 Unrestricted 0.0 Metagenome 3300006071 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Aug09 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006071 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 390980410 1003804 223 77 355 132 SRX2565946 Unrestricted 0.0 Metagenome 3300014851 *Microbiome Permanent Draft Danish lakes Microbial communities Depth profiles Lake Almind and Hund Freshwater microbial communities from Lake Almind, Silkeborg, Region Midtjylland, Denmark - ALS_03.08.12_17m re-submission with coverage Odense University Hospital 3300014851 Metagenome Analysis MEGAHIT v1.1.1 released by JGI data releasing policy Yes Yes atreusch@biology.sdu.dk Alexander Treusch No Environmental Aquatic Lake Freshwater Unclassified Freshwater 56.148 9.546 6.9 498095 1319 4 0 5 4 0.0 Metagenome 3300037573 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Seawater microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR09_25 DOE Joint Genome Institute (JGI) 3300037573 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Unclassified seawater 47.7534 -127.7638 1171240661 2540399 845 227 1455 382 SRX9096388 Unrestricted 21.8 Metagenome 3300017745 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 50 SPOT_SRF_2014-01-15 DOE Joint Genome Institute (JGI) 3300017745 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 298273725 734060 53 32 113 43 SRX7280097, SRX7280096 Unrestricted 0.0 Metagenome 3300036762 *Microbiome Permanent Draft Microbial communities from various locations in USA and France Sewage microbial communities from WWTP in Marseille, France - spike0 DOE Joint Genome Institute (JGI) 3300036762 Metagenome Analysis metaspades v. 3.13.0 Yes Yes twoyke@lbl.gov; lapennacchio@lbl.gov Tanja Woyke; Len Pennacchio No Engineered WWTP Raw wastewater Influent Municipal and sewage sewage 43.11 5.95 914408186 1389208 638 34 983 43 SRX8289081 Unrestricted 11.12 Metagenome 3300026322 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_09_20cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026322 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 503750574 1023488 545 25 846 45 SRX2727806 Unrestricted 0.0 Metagenome 2228664047 *Microbiome Permanent Draft Deep Underground Science and Engineering Laboratory groundwater microbial communities from South Dakota, US Mine filtered water microbial communities from Lead, South Dakota, sample from rock fracture pool HS4850W051111 University of Florida 2228664047 Metagenome Analysis released per PI No Yes dave.bergmann@bhsu.edu David Bergmann No Environmental Aquatic Groundwater Freshwater Unclassified Deep Underground Science and Engineering Laboratory groundwater 39.0042816 -77.1012173 8.52 5677761 10132 7 0 11 0 0.0 Metagenome 3300042633 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A25 University of California, Davis 3300042633 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 303987225 847922 375 4 725 7 0.0 Metagenome 3300031975 *Microbiome Finished The variation of viral communities during algal boom from the coastal of Qingdao, China Marine viral communities from the Yellow sea, Qingdao, China - WS0630 Beijing Novogene Bioinformatics Technology Co., Ltd 3300031975 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes foodyqw_12@163.com Yang Qingwei No Environmental Aquatic Coastal Marine Unclassified marine 36.06 120.38 277489674 437657 94 3 134 7 0.0 Metagenome 3300042378 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME29Oct2010-rr0833 DOE Joint Genome Institute (JGI) 3300042378 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 640221324 1014644 304 48 430 80 Unrestricted 18.96 Metagenome 3300049893 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Georgia, USA - flintriver_2019_sed_WHONDRS-S19S_0015 DOE Joint Genome Institute (JGI) 3300049893 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 31.184396 -84.439009 1102619406 2594383 1034 25 1963 34 Restricted 15.09 Metagenome 3300025801 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLA_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025801 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.197102 -122.010033 265678279 527133 237 6 419 9 SRX7142750 Unrestricted 0.0 Metagenome 3300045481 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-673 Genome Quebec 3300045481 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.636743 -125.01777 964046295 2050177 442 144 776 233 0.0 Metagenome 3300005575 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_12_20cm DOE Joint Genome Institute (JGI) 3300005575 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2467145930 7444365 2997 79 4817 131 SRX2728223 Unrestricted 0.0 Metagenome 3300045998 *Microbiome Permanent Draft Sediment microbial communities from various rivers and their estuaries in the United States Sediment microbial communities from Fowl River estuary, Alabama, United States - BTRS19_Sengupta_6S DOE Joint Genome Institute (JGI) 3300045998 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sg.aditi@gmail.com Aditi Sengupta No Environmental Aquatic Intertidal zone Marine Estuary sediment 30.43 -88.132 2604718192 4304548 1163 69 1866 107 Unrestricted 15.62 Metagenome 3300012288 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100201 University of Pennsylvania 3300012288 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 2076472 6170 13 0 15 1 SRX756698 0.0 Metagenome 3300027246 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1555B-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027246 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2024 -123.9409 188052689 389631 178 12 266 22 SRX2753738 Unrestricted 19.7 Metagenome 3300008124 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 763759525 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008124 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 4205736 4995 8 0 11 0 0.0 Metagenome 3300028897 *Microbiome Permanent Draft Deep ocean water column microbial communities from Yap Trench, western Pacific Ocean Seawater microbial communities from Yap Trench, western Pacific Ocean - 37I-Yap-CTD02-2000m 2000bp_Newsun Novogene 3300028897 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Ocean trench Marine Unclassified seawater 9.87 138.5 808613540 922124 286 0 339 0 0.0 Metagenome 3300000783 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion v2 (version 2) DOE Joint Genome Institute (JGI) 3300000783 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300011551 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00684 Weill Cornell Medical College 3300011551 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.78 -73.97 23364749 34372 13 0 18 0 SRX822651 0.0 Metagenome 7000000113 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human attached/keratinized gingiva microbial communities from NIH, USA - visit 1, subject 763496533 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000113 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Attached/Keratinized gingiva Human 39.0042816 -77.1012173 47777828 64546 0 0 0 0 0.0 Metagenome 2051223002 *Microbiome Permanent Draft Human fecal microbial communities from Orebro University Hospital, Sweden, of individuals with Crohns disease Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10370 University of Maryland School of Medicine 2051223002 Metagenome Analysis released per JGI data release policy No Yes cmfraser@som.umaryland.edu Claire Fraser No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 59.274717 15.230656 25416256 44089 0 0 0 0 0.0 Metagenome 3300032029 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-170 DOE Joint Genome Institute (JGI) 3300032029 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh sediment 42.722 -70.847 330649031 577889 255 1 373 6 SRX6464092 Unrestricted 16.48 Metagenome 3300043529 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield ecozone, Canada - Lake 06-304 Genome Quebec 3300043529 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.688665 -93.747517 1092529691 2547321 516 176 907 337 0.0 Metagenome 3300001727 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-55 DOE Joint Genome Institute (JGI) 3300001727 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 49.567 -138.6676 23830169 77136 3 3 6 2 Unrestricted 0.0 Metagenome 3300007712 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_B_D2_MG DOE Joint Genome Institute (JGI) 3300007712 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4968 -122.1333 663047453 1206105 681 1 1088 5 SRX2523449 Unrestricted 0.0 Metagenome 3300025669 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKB (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025669 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline Lake -68.4725 78.188 415535816 845232 369 0 620 2 SRX2839724 Unrestricted 0.0 Metagenome 3300008503 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159632143 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008503 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 116698126 160758 86 0 104 0 0.0 Metagenome 3300025136 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 275m metaG (SPAdes) (version 4) DOE Joint Genome Institute (JGI) 3300025136 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; sean.crowe@ubc.ca Ramunas Stepanauskas; Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Anoxic lake water -2.0288 29.1756 540287128 1107513 687 6 1091 11 SRX2525294 Unrestricted 0.0 Metagenome 3300020608 *Microbiome Permanent Draft Marine microbial communities from Tor Caldara Marine established microbial mat bacterial communities from Tor Caldara shallow water vent, Tyrrhenian Sea, Italy - TCM5 Molecular Research LP (MR DNA) 3300020608 Metagenome Analysis Megahit released by Sushmita Patwardhan No Yes sushmita.patwardhan@gmail.com Sushmita Patwardhan No Environmental Aquatic Hydrothermal vents Marine Microbial mats Marine microbial mat 41.48583333 12.58972222 192087314 414270 198 14 382 27 0.0 Metagenome 3300028049 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_26JUN2017_LD1 DOE Joint Genome Institute (JGI) 3300028049 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 116719985 219261 9 35 16 66 SRX5345820 Unrestricted 17.36 Metagenome 3300020487 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 13AUG2008 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020487 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 41243789 90955 68 13 101 12 SRX3310665 Unrestricted 0.0 Metagenome 3300040807 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Estuary water microbial communities from Narragansett Bay, Rhode Island, USA - E2_AmbCPB DOE Joint Genome Institute (JGI) 3300040807 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.9078 -71.5683 698724749 1068629 279 62 399 105 SRX9640897 Unrestricted 22.57 Metagenome 3300002857 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Tailing Pond Surface TP_surface McGill University 3300002857 Metagenome Analysis released per JGI data release policy No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Built environment Wastewater Tailings pond Unclassified Hydrocarbon resource environments 57.02 -111.55 729539489 1835918 663 38 1231 48 0.0 Metagenome 3300007278 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160319967 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007278 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 28502277 60119 33 0 51 0 0.0 Metagenome 3300029466 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001853-104 Beijing Genomics Institute (BGI) 3300029466 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 125077162 170805 122 0 184 0 0.0 Metagenome 3300006156 *Microbiome Finished Marine microbial communities from the Red Sea brine-pools Marine microbial communities from the Red Sea brine-pool Kebit Deep Upper-Interfase King Abdullah University of Science and Technology 3300006156 Metagenome Analysis Newbler released per PI No Yes redcancerbero@gmail.com, alm067@ucsd.edu Alvaro M. Plominsky No Environmental Aquatic Unclassified Marine Unclassified Marine 24.7187 36.2888 1674582 4280 6 0 6 0 0.0 Metagenome 3300013478 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - seawater enrichment SCG68 University of British Columbia 3300013478 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 1760668 3449 1 0 3 0 SRX143177 0.0 Metagenome 3300028969 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 503_4M Beijing Genomics Institute (BGI) 3300028969 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 71767230 85845 39 0 48 0 ERX491148 0.0 Metagenome 3300053741 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHL_02 DOE Joint Genome Institute (JGI) 3300053741 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.40849 -82.168434 605476351 850852 18 32 40 25 Restricted 88.0 Metagenome 3300056704 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.4C.11 SIP fraction DOE Joint Genome Institute (JGI) 3300056704 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 146256259 278559 196 16 300 21 Unrestricted 20.3 Metagenome 3300031603 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from Ellis Fjord, Antarctic Ocean - #185 DOE Joint Genome Institute (JGI) 3300031603 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5958 78.1913 211651588 365294 154 7 198 12 SRX5649645 Unrestricted 59.79 Metagenome 3300014737 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 567_4M Beijing Genomics Institute (BGI) 3300014737 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 43770064 57498 31 0 36 0 ERX491216 0.0 Metagenome 3300034019 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049 DOE Joint Genome Institute (JGI) 3300034019 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1448300699 2772873 828 266 1242 453 SRX7621645 Unrestricted 9.62 Metagenome 3300069394 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Moab, Southern Rockies & Colorado Plateau, UT, USA - MOAB_002-M-20170522-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069394 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.24833 -109.38827 8852207 28515 58 1 98 0 0.0 Metagenome 3300054973 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvC-P(1) 20-24 DOE Joint Genome Institute (JGI) 3300054973 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.355 19.0437 431400301 610512 136 1 163 2 Restricted 0.0 Metagenome 3300017986 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300017986 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1929405441 4155207 1323 111 2153 175 SRX4071758 Unrestricted 14.46 Metagenome 3300028987 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 332_B Beijing Genomics Institute (BGI) 3300028987 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 49124953 54091 28 1 38 0 ERX491081 0.0 Metagenome 3300009177 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG DOE Joint Genome Institute (JGI) 3300009177 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 4605211013 8920931 2758 131 4489 230 SRX3203373 Unrestricted 0.0 Metagenome 3300022068 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022068 Metagenome Analysis spades v. 3.11.1-check Yes Yes bcampb7@clemson.edu; chenf@umces.edu Barbara Campbell; Feng Chen Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.12 -75.25 220612062 604525 4 0 1 0 SRX2838064, SRX3786194, SRX3786195 Unrestricted 0.0 Metagenome 3300049983 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 009-ER18-SC-SDNA (version 2) DOE Joint Genome Institute (JGI) 3300049983 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9579 -106.9845 877661299 2390341 994 109 1985 170 Unrestricted 0.0 Metagenome 3300042779 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_10_16 NMDC pilot DOE Joint Genome Institute (JGI) 3300042779 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 9418521 16368 19 0 35 0 SRX2924397 0.0 Metagenome 3300033397 *Microbiome Permanent Draft Metagenomic SGS 2x251 Riparian soil bacterial communities from Cottonwood Creek Park, Encinitas, CA, USA - R11 Illumina 3300033397 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Riparian soil Soil 33.051604 -117.289363 397778264 1452257 266 18 513 41 0.0 Metagenome 3300050028 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 S3 20-24 DOE Joint Genome Institute (JGI) 3300050028 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.353292 19.0475 688842870 923366 180 3 228 7 Restricted 24.63 Metagenome 3300020469 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052) CEA Genoscope 3300020469 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 35.4068 -127.7432 1816657608 4119604 583 50 1075 130 0.0 Metagenome 3300025408 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from China - AD_SCU001_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025408 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 30.66 104.06 210669213 310894 150 0 192 0 SRX2157908 Unrestricted 0.0 Metagenome 3300019472 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 7 Autonomous University of Barcelona 3300019472 Metagenome Analysis SPAdes 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 3487648 6554 4 0 6 1 0.0 Metagenome 3300025687 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes) (version 4) DOE Joint Genome Institute (JGI) 3300025687 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 38.9819 -76.3716 403091217 900775 0 4 1 3 SRX5209309, SRX2753469 Unrestricted 0.0 Metagenome 3300045888 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Geyser Creek, Yellowstone National Park, WY, United States - MSUNE_GC_05 University of Wisconsin, Madison 3300045888 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.689 -110.72839 72860868 118468 46 2 59 4 0.0 Metagenome 3300034386 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Eunicella verrucosa from Algarve, Portugal - EV03H Molecular Research LP (MR DNA) 3300034386 Metagenome Analysis Metawrap workflow v. 1.0.7 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 42298584 43395 3 0 2 7 0.0 Metagenome 3300011711 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00197 Weill Cornell Medical College 3300011711 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.6 -74.0 33785290 49809 21 0 23 1 SRX822176 0.0 Metagenome 3300069378 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_038-O-20160810-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069378 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 42265605 141438 94 20 170 39 0.0 Metagenome 3300037452 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_8 DOE Joint Genome Institute (JGI) 3300037452 Metagenome Analysis metaspades v. 3.13.0 Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 2536724129 3952544 310 20 549 30 SRX9140450 Unrestricted 13.61 Metagenome 3300016371 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 DOE Joint Genome Institute (JGI) 3300016371 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Unclassified Soil 18.321 -65.8172 2910414038 6294251 1064 32 1972 67 SRX3604134, SRX5634809 Unrestricted 0.0 Metagenome 3300021335 *Microbiome Permanent Draft Coastal seawater microbial communities from Pivers Island, North Carolina, United States Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540 DOE Joint Genome Institute (JGI) 3300021335 Metagenome Analysis spades v. 3.11.1-check Yes Yes dana.hunt@duke.edu Dana Hunt No Environmental Aquatic Coastal Marine Unclassified seawater 34.7181 -76.6707 571871404 1206065 387 170 549 267 SRX4010396 Unrestricted 16.07 Metagenome 3300013273 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100500 University of Pennsylvania 3300013273 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 31390662 64660 27 0 34 0 SRX756498 0.0 Metagenome 3300044708 *Microbiome Permanent Draft Switchgrass rizosphere microbial communities from Pacific Northwest National Laboratory, Richland, WA, United States Soil microbial communities from switchgrass plot in Kellogg Biological Station, Michigan, United States - EC5014 DOE Joint Genome Institute (JGI) 3300044708 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes james.moran@pnnl.gov James Moran No Environmental Terrestrial Unclassified Soil Agricultural land soil 42.4058 -85.4023 1805795835 3012219 591 38 1000 57 Unrestricted 14.23 Metagenome 3300069633 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_044-M-20160822-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069633 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 60584269 179721 116 19 265 34 0.0 Metagenome 3300043383 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 190-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043383 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.8579 -107.0967 503724066 1428345 474 11 924 22 Unrestricted 6.78 Metagenome 3300039997 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 090_R1_022417 University of Maryland 3300039997 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.70461111 27.10461111 17119072 33838 44 2 85 3 0.0 Metagenome 3300013494 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00545 Weill Cornell Medical College 3300013494 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.9 28506188 41159 13 0 24 0 SRX822512 0.0 Metagenome 3300014253 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 235_L1_2014-7-22 San Diego State University 3300014253 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 7109514 14617 13 9 40 16 0.0 Metagenome 3300007294 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160380657 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007294 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 58005009 98618 76 0 108 0 0.0 Metagenome 3300036969 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - 2AD 57 I DOE Joint Genome Institute (JGI) 3300036969 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 566697610 1027204 602 12 966 28 SRX8377291 Unrestricted 19.25 Metagenome 3300027001 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus leukodermatus Group 1a BELIZE.2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027001 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 149412956 254328 7 1 12 2 SRX2712476 Unrestricted 0.0 Metagenome 3300030675 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces viral communities from adenoma patient in Toronto, Canada - MG100054 University of Michigan 3300030675 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 43.65 -79.38 2146681 4544 7 0 9 0 0.0 Metagenome 3300041498 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG AgResearch, New Zealand, Mosgeil 3300041498 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Unclassified Roots Unclassified White clover root -43.648506 172.343549 939309334 1716177 181 41 524 85 0.0 Metagenome 3300032320 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 17-077 Genome Quebec 3300032320 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 47.946561 -69.226091 781865750 1617824 406 103 709 182 0.0 Metagenome 3300022342 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1BM2 JM23 AGRF 3300022342 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 35062580 58084 17 1 33 1 0.0 Metagenome 3300022760 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA10 Version 2 University of New South Wales 3300022760 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes z5119396@unsw.edu.au; h.luter@aims.gov.au Hung Nguyen; Holly Bennett No Host-associated Porifera Unclassified Unclassified Unclassified Marine -18.833 147.683 8.1 35066871 53095 30 3 26 3 0.0 Metagenome 3300000528 *Microbiome Permanent Draft Acid mine drainage (AMD) microbial communities from Fan Kou Mine, Shaoguan city, Guangdong Province, China ACID_T Macrogen 3300000528 Metagenome Analysis released per JGI data release policy No Yes humin@soil.gd.cn Hu min No Environmental Aquatic Groundwater Freshwater Mine drainage Acid mine drainage 24.814784 113.602638 3.7 2804564 5386 0 0 1 0 0.0 Metagenome 3300040470 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_003-M-20140415-COMP-DNA1 Argonne National Laboratory 3300040470 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 3244966 9780 26 3 48 2 ERX2133938 0.0 Metagenome 3300025203 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0627 (SPAdes) DOE Joint Genome Institute (JGI) 3300025203 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -28.62 -11.8 56914256 118389 64 3 111 2 SRX1982980 Unrestricted 0.0 Metagenome 3300036987 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Coal bed water microbial communities from the Powder River Basin, Montana, United States - T11 DOE Joint Genome Institute (JGI) 3300036987 Metagenome Analysis metaspades v. 3.13.0 Yes Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Aquatic Groundwater Deep subsurface Coalbed methane well water coal bed water 45.4352 -106.3919 1119955902 1360528 412 12 532 22 SRX8395129 Unrestricted 33.57 Metagenome 3300049291 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MB22 DOE Joint Genome Institute (JGI) 3300049291 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 409087021 1007799 647 9 1415 18 Unrestricted 17.16 Metagenome 3300025344 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIREN14 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025344 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake enrichment -68.5563 78.1877 23608915 43454 25 0 50 0 SRX2747289 Unrestricted 0.0 Metagenome 3300019713 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FRC_3-4_MG DOE Joint Genome Institute (JGI) 3300019713 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 104124668 260729 214 21 446 21 Unrestricted 3.38 Metagenome 3300025923 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025923 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 3208123717 7407308 1298 92 2387 159 SRX2740295 Unrestricted 0.0 Metagenome 3300029828 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P013V1 Beijing Genomics Institute (BGI) 3300029828 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 188881099 245710 157 0 240 0 0.0 Metagenome 3300050720 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Creek water viral communities from Sandhills, Nebraska, United States - NSL_BCreek_2020_V DOE Joint Genome Institute (JGI) 3300050720 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Creek Freshwater Unclassified Creek water 41.60026 -102.33403 4158276 12644 4 4 9 0 Unrestricted 1231.73 Metagenome 3300031269 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #991 DOE Joint Genome Institute (JGI) 3300031269 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.457 78.1911 210781061 438016 127 28 167 42 SRX5649555 Unrestricted 57.36 Metagenome 3300026928 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 44 (SPAdes) DOE Joint Genome Institute (JGI) 3300026928 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 90459670 199943 74 0 147 2 SRX4340893 Unrestricted 0.0 Metagenome 3300038403 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Sediment microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_South_4 DOE Joint Genome Institute (JGI) 3300038403 Metagenome Analysis metaspades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Wetlands Marine Sediment sediment 26.3584 -80.2982 750767940 1294692 465 14 895 20 SRX9405208 Unrestricted 13.62 Metagenome 3300029112 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021215-34 Beijing Genomics Institute (BGI) 3300029112 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 121872820 147682 99 3 173 4 0.0 Metagenome 3300007919 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159571453 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007919 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 30991851 63610 30 0 52 0 0.0 Metagenome 3300028275 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepB_8d DOE Joint Genome Institute (JGI) 3300028275 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 175471912 372516 165 6 263 16 SRX5245409 Unrestricted 14.0 Metagenome 3300001195 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes from Sediment core from a heavy oil reservoir,Alberta Canada Inniskillen 614.3 McGill University 3300001195 Metagenome Analysis released per user request No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Environmental Terrestrial Sediment Oil reservoir Unclassified Hydrocarbon resource environments 56.04 -118.13 7016652 11041 5 0 4 0 0.0 Metagenome 3300057052 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E1L_40_42 DOE Joint Genome Institute (JGI) 3300057052 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.997158 -81.489236 585703638 1015839 318 1 577 0 Unrestricted 12.76 Metagenome 3300026208 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV72 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026208 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 259895169 517801 146 0 296 1 SRX2782317 Unrestricted 0.0 Metagenome 3300028762 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_3 DOE Joint Genome Institute (JGI) 3300028762 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 1209415045 2291398 335 44 468 74 SRX5799257 Unrestricted 0.0 Metagenome 3300017910 *Microbiome Permanent Draft Marine microbial communities from Caribbean coral reef seawater Marine microbial communities from Caribbean coral reef seawater, Florida Keys, United States - site GB20 University of Illinois, Urbana-Champaign 3300017910 Metagenome Analysis MEGAHIT v1.1.1-2-g02102e1 released by JGI data releasing policy No Yes lweber@whoi.edu Laura Weber No Environmental Aquatic Intertidal zone Marine Coral reef seawater 24.545 -81.406 223650144 314694 104 9 124 16 0.0 Metagenome 3300028340 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #3 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028340 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 46499990 83695 20 1 36 1 SRX3241667 Unrestricted 0.0 Metagenome 3300038322 *Microbiome Draft Bras del Port CELL metagenomes September 2016 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CR30 Cells September 2016 FISABIO - Public Health 3300038322 Metagenome Analysis IDBA v. 1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline water 38.1912 -0.5947 110526741 178835 48 0 71 0 0.0 Metagenome 3300044591 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME17Jul2018-rr0946 DOE Joint Genome Institute (JGI) 3300044591 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1051941694 1611093 369 44 522 81 Unrestricted 16.77 Metagenome 3300027777 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027777 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 46.8319 -72.5 866724326 1737028 402 50 549 75 SRX2955010 Unrestricted 0.0 Metagenome 3300018931 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - early stage, 9 hrs after wetting v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018931 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 405775009 859812 445 17 706 39 0.0 Metagenome 3300046330 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_100 DOE Joint Genome Institute (JGI) 3300046330 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9236 -106.9499 351914911 829456 1155 4 2338 6 Restricted 0.0 Metagenome 3300023118 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L208-509C-2 DOE Joint Genome Institute (JGI) 3300023118 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 766922244 1544107 482 88 744 147 SRX4798777 Unrestricted 14.56 Metagenome 3300070497 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_047-M-20180717-COMP-DNA1 Battelle Memorial Institute 3300070497 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 38.894257 -78.137217 5.95-6.12 5294134 17468 50 2 84 4 0.0 Metagenome 3300032196 *Microbiome Finished Microbial communities from various environments in Magnetic Island Reef, Townsville, Australia Sediment microbial communities from Magnetic Island Reef, Townsville, Australia - 36357 AGRF 3300032196 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes b.glasl@aims.gov.au Bettina Glasl No Environmental Aquatic Coastal Marine Sediment Sediment -19.1531 146.8641 1503976610 4093414 887 24 1350 37 0.0 Metagenome 3300029421 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 050_3_12_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029421 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 202226077 247943 212 0 280 0 0.0 Metagenome 3300013625 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100145 University of Pennsylvania 3300013625 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 7471991 13701 9 3 15 5 SRX756387 0.0 Metagenome 3300039869 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, Pacific Southwest, CA, USA - SJER_001-M-20170314-COMP-DNA1 Battelle Memorial Institute 3300039869 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.10878 -119.73228 25388159 75132 178 22 309 33 0.0 Metagenome 3300041891 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_50 MetaG AgResearch, New Zealand, Mosgeil 3300041891 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1791055146 3573806 376 21 1227 44 0.0 Metagenome 3300036897 *Microbiome Permanent Draft Soil microbial communities from a coastal freshwater wetland in North Carolina, United States Soil microbial communities from coastal freshwater wetland in North Carolina, United States - 12NFC DOE Joint Genome Institute (JGI) 3300036897 Metagenome Analysis metaspades v. 3.13.0 Yes Yes peraltaa@ecu.edu Ariane Peralta No Environmental Terrestrial Wetlands Soil Unclassified soil 35.8956 -76.1655 671627089 1103084 232 13 402 21 SRX8387885 Unrestricted 13.99 Metagenome 3300045974 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Microbial mat bacterial communities from freshwater pond, North Slope, Alaska, United States - TFS_Pond3_20July2019 DOE Joint Genome Institute (JGI) 3300045974 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes demerson@bigelow.org David Emerson No Environmental Aquatic Pond Freshwater Unclassified freshwater ferric oxide microbial mat 68.6243 -149.6011 1524720137 2489134 769 266 1149 388 Unrestricted 16.97 Metagenome 3300061129 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIF2SW PMA-treated Jet Propulsion Laboratory, California Institute of Technology 3300061129 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 72364611 95417 31 4 35 7 SRX3808520, SRX3808540, SRX2249337, SRX2249360 0.0 Metagenome 3300042972 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_USB_098 (downsampled for mapping) DOE Joint Genome Institute (JGI) 3300042972 Metagenome Analysis metaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 34940823 34363 38 0 37 0 SRX12729052, SRX12729054, SRX12729053 Unrestricted 0.0 Metagenome 3300042394 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME07May2009D12-rr0867 DOE Joint Genome Institute (JGI) 3300042394 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 525601548 839079 145 25 208 36 Unrestricted 21.72 Metagenome 3300055075 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_28-s55 day 154 DOE Joint Genome Institute (JGI) 3300055075 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1593172862 2298407 325 156 427 168 Unrestricted 38.86 Metagenome 3300047556 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Sycamore Creek, Mesa, Arizona, USA - sycamorecreek_2019_sw_WHONDRS-S19S_0028 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047556 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 33.7508 -111.5081 262484311 410336 390 157 667 225 Unrestricted 0.0 Metagenome 3300012483 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.yng.040610 DOE Joint Genome Institute (JGI) 3300012483 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 90450822 243194 204 28 411 47 SRX3527433 Unrestricted 0.0 Metagenome 3300069464 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_006-M-20140707-COMP-DNA1 re-annotation Argonne National Laboratory 3300069464 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 3314987 10402 46 5 70 15 ERX2134004 0.0 Metagenome 3300044970 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME30Aug2006D12-rr0909 DOE Joint Genome Institute (JGI) 3300044970 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 965020741 1493924 445 48 575 76 Unrestricted 15.74 Metagenome 3300027484 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09.2A1-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300027484 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 43519500 141188 126 3 228 7 SRX2576250 Unrestricted 0.0 Metagenome 3300026019 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_305 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026019 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 76502321 200137 151 5 276 9 SRX2564568, SRX2581035 Unrestricted 0.0 Metagenome 3300046775 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mississippi River, Illinois, USA - NASQAN2012_132 DOE Joint Genome Institute (JGI) 3300046775 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9511 -90.3712 23287454 71221 86 17 122 28 Unrestricted 0.0 Metagenome 3300031159 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States - P4_Day56_Rep2 DOE Joint Genome Institute (JGI) 3300031159 Metagenome Analysis spades v. 3.12.0 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass growth medium 37.8406 -122.2901 137263814 193067 175 0 199 0 SRX5661188 Unrestricted 173.57 Metagenome 3300052934 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Wyoming, USA - M_C3_S1 DOE Joint Genome Institute (JGI) 3300052934 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 41.12137 -106.15332 300225481 568001 372 81 696 128 Unrestricted 21.9 Metagenome 3300033489 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214 (version 2) DOE Joint Genome Institute (JGI) 3300033489 Metagenome Analysis spades v. 3.13.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9888 -108.3994 2623465381 5522327 1810 18 2922 31 SRX7077523, SRX7077524 Unrestricted 0.0 Metagenome 3300029396 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 008_6_10_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029396 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 124916506 142037 83 0 151 0 0.0 Metagenome 3300007028 *Microbiome Permanent Draft Non-marine hypersaline water microbial communities from Salinas de A?ana, Spain Non-marine hypersaline water microbial communities from A?ana, Logro?o, Spain - Cell_A?ana_Balsa University of Alicante 3300007028 Metagenome Analysis IDBA 1.1.1 PRE correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified hypersaline water 42.80111387 -2.985507 46133856 91661 76 9 152 25 0.0 Metagenome 3300037280 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - IV_Fen_F2 DOE Joint Genome Institute (JGI) 3300037280 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 478985414 1328776 728 57 1263 103 SRX8398202 Unrestricted 5.87 Metagenome 3300040171 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Ozarks Complex, AL, USA - LENO_001-M-20160829-COMP-DNA1 Battelle Memorial Institute 3300040171 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.85388 -88.16122 8321174 29345 73 3 114 6 0.0 Metagenome 3300042035 *Microbiome Permanent Draft Mollusc gills microbial communities from various hydrothermal vent in Atlantic Ocean Mollusc gills microbial communities from Lucky Strike-Eifeltower hydrothermal vent, Atlantic Ocean - BazoSym_LS-ET_5_1048J Max Planck Institute for Marine Microbiology 3300042035 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 37.28292 -32.27561 7179640 9076 3 1 5 1 ERX3367189 0.0 Metagenome 3300020399 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000470 (ERX555969-ERR598947) CEA Genoscope 3300020399 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -31.056 4.6606 829993892 2149182 589 56 1132 91 0.0 Metagenome 3300000875 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 E2 DOE Joint Genome Institute (JGI) 3300000875 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov; 17826834892@163.com; raperrier@lbl.gov Jeff Kimbrel, Jeff Kimbrel; wang binhao; Rene A. Perrier No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 41149050 75388 50 0 88 0 SRX3311490 Unrestricted 0.0 Metagenome 3300003640 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 m-RNA DAY 07 University of Sao Paulo, Virginia Bioinformatics Institute 3300003640 Metagenome Analysis SoapDeNovo released per JGI data release policy No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 30775892 69802 15 41 33 94 0.0 Metagenome 3300050278 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_34 DOE Joint Genome Institute (JGI) 3300050278 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.492 160.907 329936068 476468 126 6 158 7 SRX18235949 Restricted 36.41 Metagenome 3300020501 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 27SEP2009 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020501 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 79283832 171622 86 16 133 29 SRX1988265 Unrestricted 0.0 Metagenome 3300041962 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_Marker33_DNA SE_2020 3300041962 Metagenome Analysis IDBA_UD v. 1.1.3 released by JGI data releasing policy No Yes cfortunato@gmail.com; randerson@carleton.edu; elks@mit.edu Caroline Fortunato; Rika Anderson; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 214877013 439288 374 17 644 28 0.0 Metagenome 3300045116 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_100m_2015 DOE Joint Genome Institute (JGI) 3300045116 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 991319946 1757769 718 16 1217 16 Unrestricted 15.11 Metagenome 3300050712 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water viral communities from Sandhills, Nebraska, United States - NSL_Smith_2018_V DOE Joint Genome Institute (JGI) 3300050712 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.78581 -102.52354 373540791 940281 159 3 285 4 Unrestricted 66.03 Metagenome 3300061145 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IF4SW no PMA treatment Jet Propulsion Laboratory, California Institute of Technology 3300061145 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 54479951 90964 10 9 16 20 SRX2249364, SRX3808531, SRX2249365, SRX3808527 0.0 Metagenome 3300032312 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains Ecozone, Canada - Lake 08-155 Genome Quebec 3300032312 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.392148 -76.818354 711971911 1441852 388 104 564 161 0.0 Metagenome 3300009801 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S2_20_30 DOE Joint Genome Institute (JGI) 3300009801 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228379 -119.2717467 102365180 234124 215 18 383 33 SRX2522451 Unrestricted 0.0 Metagenome 3300013649 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01032 Weill Cornell Medical College 3300013649 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.67 -73.85 10764835 17832 11 0 13 0 SRX822994 0.0 Metagenome 3300035314 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from diseased Eunicella gazella from Algarve, Portugal - EG16N Euk Molecular Research LP (MR DNA) 3300035314 Metagenome Analysis Metawrap workflow v. 1.0.5 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 76766 89 0 1 1 1 0.0 Metagenome 3300041042 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand- T3D6 IDBA-UD 60x Baseclear 3300041042 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 79528184 122161 106 11 193 8 0.0 Metagenome 3300061538 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from National Grasslands LBJ, Texas, USA - CLBJ_002-M-20210506-comp-1 DOE Joint Genome Institute (JGI) 3300061538 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Grasslands Soil Unclassified Terrestrial soil 33.40398 -97.57114 1934300057 3432497 624 19 1184 34 Unrestricted 15.64 Metagenome 3300014163 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In3P SAF170 SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300014163 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1 -118.1 6150225 9564 4 1 11 3 Unrestricted 0.0 Metagenome 3300029575 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P023V1 Beijing Genomics Institute (BGI) 3300029575 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 213966007 249323 136 0 196 0 0.0 Metagenome 3300002006 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot26-2 3300002006 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 4705580 26608 114 7 204 21 0.0 Metagenome 3300003944 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius geniculatus LIZARD ISLAND DOE Joint Genome Institute (JGI) 3300003944 Metagenome Analysis MEGAHIT v. 0.1.3-bugfix2 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 405750340 777498 37 8 61 22 SRX3340730 Unrestricted 0.0 Metagenome 3300040056 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from LBJ National Grassland , Southern Plains, TX, USA - CLBJ_001-M-20170412-COMP-DNA1 Battelle Memorial Institute 3300040056 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 33.40123 -97.57 13302399 29157 29 2 40 4 0.0 Metagenome 3300003402 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_solids_1 DOE Joint Genome Institute (JGI) 3300003402 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioremediation Unclassified Thiocyanate Unclassified Wastewater bioreactor -33.936637 18.478905 226815378 374515 172 38 291 47 SRX2576710 Unrestricted 0.0 Metagenome 3300024275 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK15 DOE Joint Genome Institute (JGI) 3300024275 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 114812908 309811 223 17 406 32 SRX4547512 Unrestricted 7.62 Metagenome 3300053089 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 endosphere DOE Joint Genome Institute (JGI) 3300053089 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.588222 -123.193963 680513721 1009344 118 107 205 131 Unrestricted 17.9 Metagenome 3300045507 *Microbiome Permanent Draft Florida Reef Tract Coral Disease Outbreak Coral surface microbial communities from Montastraea cavernosa, offshore reef, Ft. Lauderdale, FL, USA - McAH -2 University of Florida 3300045507 Metagenome Analysis MEGAHIT v. 1.1.4 released per PI No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified coral surface 26.16 -80.1 406563093 618111 2 8 2 15 0.0 Metagenome 3300070523 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Arizona, USA - SRER_001-M-20190806-COMP-DNA1 Battelle Memorial Institute 3300070523 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.862142 -110.818853 6.36-7 11642213 36794 54 9 85 18 0.0 Metagenome 3300038310 *Microbiome Permanent Draft Marine sediment microbial communities from New Orleans, USA to study impact of Deep Water Horizon explosion Marine sediment microbial communities from Barataria Bay, New Orleans, USA to study impact of Deep Water Horizon explosion - M1117 Battelle Memorial Institute 3300038310 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Coastal Marine Sediment Marine sediment 29.463 -89.88 113015115 237180 111 5 225 5 0.0 Metagenome 3300011346 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100571 University of Pennsylvania 3300011346 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 10129377 17359 20 3 32 4 SRX756183 0.0 Metagenome 3300011917 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01490 Weill Cornell Medical College 3300011917 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.63 -74.01 56349381 108637 57 0 64 0 SRX823370 0.0 Metagenome 3300017922 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in Texas, USA - hydraulic fracturing test 6_PW_90 DOE Joint Genome Institute (JGI) 3300017922 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Fracking water 30.238 -102.628 96657288 171633 245 0 383 1 SRX3937562 Unrestricted 83.93 Metagenome 3300034403 *Microbiome Permanent Draft St. Lawrence estuary microbiome Marine microbial community of the St. Lawrence Estuary, Canada - S25_PA_320_04D Genome Quebec 3300034403 Metagenome Analysis Megahit v. 1.0.6 released by JGI data releasing policy Yes Yes susanne.kraemer@ed.ac.uk Susanne Kraemer No Environmental Aquatic Coastal Marine Unclassified marine 48.175 -69.228 451646894 1010776 357 184 660 365 0.0 Metagenome 3300039142 *Microbiome Permanent Draft Freshwater microbial communities from various watersheds in Southwestern British Columbia, Canada Freshwater microbial communities from Southwestern British Columbia, Canada - PDS_009 University of British Columbia 3300039142 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 49.0 -123.0 7837058 18552 28 0 56 0 0.0 Metagenome 3300023255 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 10-14 DOE Joint Genome Institute (JGI) 3300023255 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0472 135905799 348711 118 4 177 24 SRX4415333, SRX8128006 Unrestricted 0.0 Metagenome 3300029120 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021209-24 Beijing Genomics Institute (BGI) 3300029120 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 169396425 247445 165 0 263 1 0.0 Metagenome 3300048591 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Sediment microbial communities from brackish wetlands in San Jose, California, USA - ROC9_2 DOE Joint Genome Institute (JGI) 3300048591 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Intertidal zone Marine Salt marsh sediment Sediment 37.427598 -121.938678 1933136706 2727785 681 65 934 99 Unrestricted 19.29 Metagenome 3300009136 *Microbiome Permanent Draft Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 82 cmbsf Oregon State University 3300009136 Metagenome Analysis MetaSPAdes released per JGI data release policy No Yes rcolwell@coas.oregonstate.edu Frederick Colwell No Environmental Aquatic Unclassified Sediment Unclassified Marine Sediment 39.54345 -72.3998 1452667645 4598977 671 9 1327 11 0.0 Metagenome 3300028781 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_3 DOE Joint Genome Institute (JGI) 3300028781 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 713171212 1619660 214 42 381 81 SRX5355864 Unrestricted 0.0 Metagenome 3300011658 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01093 Weill Cornell Medical College 3300011658 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.64 -73.94 36823725 46966 12 0 23 0 SRX823048 0.0 Metagenome 3300024340 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_5 DOE Joint Genome Institute (JGI) 3300024340 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Strait Marine Unclassified seawater 49.2166667 -123.5333333 911589078 2591138 718 41 1326 74 SRX4480232 Unrestricted 9.18 Metagenome 3300009669 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG DOE Joint Genome Institute (JGI) 3300009669 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 41.53 -90.43 814356434 1370459 693 0 1091 3 SRX2157891 Unrestricted 0.0 Metagenome 3300003323 *Microbiome Permanent Draft Sugarcane root and bulk soil microbial communities from Ayr, Burdekin, Queensland Australia Sugarcane root Sample H1 3300003323 Metagenome Analysis CLC genomics workbench 7 released by JGI data releasing policy No Yes yun.yeoh@uqconnect.edu.au Yun Kit Yeoh No Host-associated Plants Unclassified Roots Unclassified Sugarcane root and bulk soil -19.733298 147.17873 876889845 1177600 57 22 91 35 0.0 Metagenome 3300056880 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E1L_18_20 DOE Joint Genome Institute (JGI) 3300056880 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.997158 -81.489236 1318803388 2111223 558 4 969 11 Unrestricted 11.49 Metagenome 3300005466 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG DOE Joint Genome Institute (JGI) 3300005466 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 42.3948 -85.3738 3692787288 10179856 2852 250 4874 424 SRX2740700 Unrestricted 0.0 Metagenome 7000000455 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 158499257 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000455 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 206330030 366004 0 0 0 0 0.0 Metagenome 3300001201 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY86 J. Craig Venter Institute (JCVI) 3300001201 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 844150743 2910756 134 57 428 102 0.0 Metagenome 3300009687 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC035_MetaG DOE Joint Genome Institute (JGI) 3300009687 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 39.84 -89.0 1085894076 1881427 977 3 1544 9 SRX2157890 Unrestricted 0.0 Metagenome 3300002843 *Microbiome Permanent Draft Stormwater retention pond microbial communities from Williamsburg, VA Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Greensprings 3300002843 Metagenome Analysis Newbler released per JGI data releasing policy No Yes kewilliamson@wm.edu Kurt Williamson No Environmental Aquatic Pond Freshwater Unclassified Stormwater retention pond 37.248966 -76.787831 837633 1691 0 0 0 0 0.0 Metagenome 3300056694 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.5W.15 SIP fraction DOE Joint Genome Institute (JGI) 3300056694 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 230571733 433413 200 33 345 42 Unrestricted 14.72 Metagenome 3300032279 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada - Lake 06-129 Genome Quebec 3300032279 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.034106 -74.216565 614582496 1301732 341 130 622 216 0.0 Metagenome 3300031793 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21 DOE Joint Genome Institute (JGI) 3300031793 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1261858513 3011737 397 3 638 8 SRX5820203 Unrestricted 12.21 Metagenome 3300044674 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Estuarine water microbial communities from San Francisco Bay, California, United States - Nov18_FB_3_27S DOE Joint Genome Institute (JGI) 3300044674 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 37.6183 -122.2916 908290341 1465629 318 133 463 214 Unrestricted 53.99 Metagenome 3300050552 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf microbial communities from Olympic Peninsula, Washington, USA - D0_SEK2_5 DOE Joint Genome Institute (JGI) 3300050552 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Alder tree leaf 48.165 -124.245 219852984 278886 25 19 52 20 Unrestricted 40.7 Metagenome 3300000666 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 17 DOE Joint Genome Institute (JGI) 3300000666 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 3206642 10174 18 0 34 0 SRX4339340 Unrestricted 0.0 Metagenome 3300014931 *Microbiome Permanent Draft Human fecal microbial community of Hadza hunter-gatherer and regular subjects from Tanzania and Italy Human fecal microbial community from subjects in taly - 20011 University of Bologna 3300014931 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 44.4950537 11.3427401 45559849 104801 52 0 101 3 0.0 Metagenome 3300014776 *Microbiome Permanent Draft Human fecal microbial community of Hadza hunter-gatherer and regular subjects from Tanzania and Italy Human fecal microbial community of Hadza hunter-gatherer populations from Tanzania - 10002 University of Bologna 3300014776 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal -3.6347588 35.0828588 97164100 179420 82 0 173 0 0.0 Metagenome 3300025177 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP1091 (SPAdes) DOE Joint Genome Institute (JGI) 3300025177 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -29.81 82.62 51051292 106843 67 13 113 35 SRX1982598 Unrestricted 0.0 Metagenome 3300037331 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Abraxas Lake #428 DOE Joint Genome Institute (JGI) 3300037331 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4899 78.2806 333569157 670724 143 59 213 91 SRX9174276 Unrestricted 23.89 Metagenome 3300001921 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from the Cayman Rise, Cayman Islands Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Shallow Sites - gte4kb 3300001921 Metagenome Analysis IDBA_UD k52-k92 step10 - contigs greater than or equal to 4kb released by JGI data releasing policy No Yes Gregory Dick, Sunit Jain No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 18.35 -81.85 424665720 665288 521 18 843 41 0.0 Metagenome 3300040588 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_026-M-20170711-COMP-DNA1 Battelle Memorial Institute 3300040588 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 1890294 5325 17 5 29 4 0.0 Metagenome 3300049059 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - A26_B_BS (version 2) DOE Joint Genome Institute (JGI) 3300049059 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 183815131 415863 440 11 925 17 Unrestricted 0.0 Metagenome 3300043654 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 375-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043654 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9907 -107.0622 747497856 1685504 361 34 558 51 Unrestricted 7.17 Metagenome 3300035521 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver proximal colon microbial communities from Maple Ridge, British Columbia, Canada - Beaver6Prox.Colon1 DOE Joint Genome Institute (JGI) 3300035521 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Proximal colon proximal colon 49.18 -122.54 910120898 1604609 700 39 1051 56 SRX8346533 Unrestricted 7.0 Metagenome 3300013580 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100632 University of Pennsylvania 3300013580 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 2406426 6154 5 0 8 3 SRX756462 0.0 Metagenome 3300070389 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_033-O-20180709-COMP-DNA1 3300070389 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 77321404 202885 90 13 151 22 0.0 Metagenome 3300043138 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - WH_080817 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043138 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.8725 -89.3578 24456146 69243 127 15 199 17 SRX9382053 Unrestricted 21.15 Metagenome 3300026310 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026310 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.73825 -123.6301 634662617 1162155 341 21 559 22 SRX2562383 Unrestricted 0.0 Metagenome 3300021597 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Coastal seawater microbial communities from Marineland, Florida, United States - SWA TP1 #2 DOE Joint Genome Institute (JGI) 3300021597 Metagenome Analysis spades v. 3.11.1-check Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6703 -81.2145 151058308 224472 153 0 162 0 SRX3985498 Unrestricted 60.76 Metagenome 3300045180 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_3_B DOE Joint Genome Institute (JGI) 3300045180 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 176626130 211810 102 1 123 2 Unrestricted 79.26 Metagenome 3300041787 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - TR_35_wk_2 DOE Joint Genome Institute (JGI) 3300041787 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9957 -107.075 296697335 809267 315 13 602 21 SRX14808260 Unrestricted 7.34 Metagenome 3300003589 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_120m_DNA DOE Joint Genome Institute (JGI) 3300003589 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 210273364 451863 277 13 477 19 Unrestricted 0.0 Metagenome 3300036781 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in California, United States - CAS_2 DOE Joint Genome Institute (JGI) 3300036781 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil 37.0 -122.2 2713064654 4210234 751 56 1114 82 SRX8383921 Unrestricted 12.87 Metagenome 3300040662 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_002-M-20160810-COMP-DNA1 Battelle Memorial Institute 3300040662 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 1526164 4751 23 3 44 0 0.0 Metagenome 3300028025 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC DOE Joint Genome Institute (JGI) 3300028025 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified deep subsurface sediment 39.6017 -79.9761 353102630 723601 83 34 202 43 SRX5246452 Unrestricted 31.81 Metagenome 3300037216 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 711 E-3-D DOE Joint Genome Institute (JGI) 3300037216 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0467 724002907 1575847 479 4 855 11 SRX8146974 Unrestricted 7.7 Metagenome 3300009923 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S11 University of New South Wales 3300009923 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 64743852 108474 7 8 15 19 0.0 Metagenome 3300030073 *Microbiome Permanent Draft Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA - cet4 University of Minnesota 3300030073 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic River Freshwater Unclassified Freshwater 44.917867 -93.128967 4521529 4546 6 0 8 0 0.0 Metagenome 3300011134 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01384 Weill Cornell Medical College 3300011134 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.63 -74.01 24410700 35321 12 0 17 0 SRX823324 0.0 Metagenome 3300005828 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.182_BBI Oregon Health and Science University (OHSU) 3300005828 Metagenome Analysis unassembled released per JGI data release policy No Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Unclassified Sediment Unclassified sediment (intertidal) 46.30247 -123.03645 785994293 1563915 611 101 1143 156 0.0 Metagenome 3300042464 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-ww0112 DOE Joint Genome Institute (JGI) 3300042464 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 705362228 1048434 209 43 290 48 Unrestricted 22.44 Metagenome 3300045004 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_70m_2014 DOE Joint Genome Institute (JGI) 3300045004 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 454026659 784238 233 5 358 13 Unrestricted 26.32 Metagenome 3300070367 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dead Lake, Alabama, USA - DELA_040-M-20190626-COMP-DNA1 3300070367 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 21305064 66634 93 7 129 7 0.0 Metagenome 3300044698 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_051817_120_130_jgi DOE Joint Genome Institute (JGI) 3300044698 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2485942280 3933405 935 13 1386 19 Unrestricted 15.19 Metagenome 3300056678 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.3W.11 SIP fraction DOE Joint Genome Institute (JGI) 3300056678 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 172820846 295450 218 30 360 40 Unrestricted 19.74 Metagenome 3300021078 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo DOE Joint Genome Institute (JGI) 3300021078 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified groundwater sediment 38.9197 -106.9492 .05 817329422 2104642 678 20 1324 28 SRX4020906 Unrestricted 22.06 Metagenome 3300042002 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 DOE Joint Genome Institute (JGI) 3300042002 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.8942 -103.685 352622490 884560 433 49 851 77 SRX14828567 Unrestricted 8.61 Metagenome 3300024897 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 110_LOW13 (SPAdes) DOE Joint Genome Institute (JGI) 3300024897 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 13054964 18370 9 0 10 0 SRX2721183 Unrestricted 0.0 Metagenome 3300000052 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Coal bed methane well microbial communities from Alberta, Canada McGill University 3300000052 Metagenome Analysis No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Biotransformation Unclassified Microbial solubilization of coal Unclassified Hydrocarbon resource environments 52.119 -113.78 283498382 665055 355 52 693 86 0.0 Metagenome 3300043406 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Marshall Gulch, Summerhaven, Arizona, USA - marshallgulch_2019_sw_WHONDRS-S19S_0035 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043406 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 32.3273 -110.7595 145215941 268409 268 90 440 183 Unrestricted 25.55 Metagenome 3300004124 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300004124 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 675010231 1967484 493 160 895 371 Unrestricted 0.0 Metagenome 3300014247 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 255_L4_2014-7-7 San Diego State University 3300014247 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 2239142 8530 16 9 45 21 0.0 Metagenome 3300017729 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 19 SPOT_SRF_2011-01-11 DOE Joint Genome Institute (JGI) 3300017729 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 237987710 569278 145 124 202 213 SRX7207097, SRX7207096 Unrestricted 0.0 Metagenome 3300048000 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_160210.NP1 DOE Joint Genome Institute (JGI) 3300048000 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 568631018 1197936 357 24 517 33 Unrestricted 15.74 Metagenome 3300060458 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210530_03_17 DOE Joint Genome Institute (JGI) 3300060458 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 408663729 624576 215 78 303 128 Unrestricted 25.94 Metagenome 3300001046 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP1202 DOE Joint Genome Institute (JGI) 3300001046 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -30.33 103.31 38186339 92175 73 3 121 6 SRX1982558 Unrestricted 0.0 Metagenome 3300033502 *Microbiome Permanent Draft Lab enriched peat soil microbial communities from two peatlands near Ithaca, NY, United States Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF9FY SIP fraction DOE Joint Genome Institute (JGI) 3300033502 Metagenome Analysis spades v. 3.13.0 Yes Yes rer26@cornell.edu Ruth Richardson No Environmental Terrestrial Wetlands Soil Peat peat soil 42.3286 -76.4792 309433661 703622 103 0 186 0 SRX6469168 Unrestricted 8.68 Metagenome 3300071084 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Soaproot Saddle, California, USA - SOAP_002-M-20180531-COMP-DNA1 3300071084 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 5888729 18852 67 2 98 7 0.0 Metagenome 3300024049 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-P30 DOE Joint Genome Institute (JGI) 3300024049 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.5253 -123.5031 101150813 258552 150 55 265 92 SRX4393147 Unrestricted 10.2 Metagenome 3300000621 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 27AUG2007 hypolimnion DOE Joint Genome Institute (JGI) 3300000621 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300012306 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100441 University of Pennsylvania 3300012306 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8540514 22495 16 0 31 0 SRX756557 0.0 Metagenome 3300001966 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Roca Redonda, Equador - GS030 J. Craig Venter Institute (JCVI) 3300001966 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Oceanic Marine Unclassified Marine 0.27222222 -91.63333 149020677 269933 167 1 203 1 0.0 Metagenome 3300005112 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F10 DOE Joint Genome Institute (JGI) 3300005112 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 54438010 75912 80 0 99 0 SRX3195103 Unrestricted 0.0 Metagenome 3300013023 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Fungus gardens microbial communities from leaf cutter ant in Botucatu, State of S?o Paulo, Brazil - Atta bisphaerica ABBM1 DOE Joint Genome Institute (JGI) 3300013023 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Fungi Unclassified Mycelium Unclassified fungus garden -22.846 -48.436 389484451 610783 628 29 1186 68 SRX3899736 Unrestricted 60.91 Metagenome 3300027736 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027736 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 45.4091 -72.0994 741180681 1409776 325 50 448 81 SRX2996439 Unrestricted 0.0 Metagenome 3300027971 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027971 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 45.4091 -72.0994 663312117 1282406 261 81 443 158 SRX2996443 Unrestricted 0.0 Metagenome 3300070788 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_034-O-20190104-COMP-DNA1 3300070788 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 48533783 148047 74 5 182 12 0.0 Metagenome 3300002114 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A5-10 DOE Joint Genome Institute (JGI) 3300002114 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 706171 2549 33 0 72 1 SRX1990515 Unrestricted 0.0 Metagenome 3300013364 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01302 Weill Cornell Medical College 3300013364 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.86 -73.84 27549831 42356 8 0 11 0 SRX823242 0.0 Metagenome 3300000297 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM338 Beijing Genomics Institute (BGI), Macrogen 3300000297 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 137978906 284309 660 2 1006 1 0.0 Metagenome 3300024969 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 26_LOW6 (SPAdes) DOE Joint Genome Institute (JGI) 3300024969 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 94528370 157872 48 0 68 0 SRX2720164 Unrestricted 0.0 Metagenome 3300001803 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM38, ROCA_DNA106_0.2um_23l 3300001803 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River plume Marine Plankton Marine plankton 10.6822 -54.4213 2298590 7083 2 2 10 4 0.0 Metagenome 3300032045 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65 DOE Joint Genome Institute (JGI) 3300032045 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5341 -110.798 275539904 623182 160 0 223 0 SRX6411423 Unrestricted 116.99 Metagenome 3300003435 *Microbiome Permanent Draft Whitefly associated endosymbiont microbial communities from Neve Yaar, Israel Whitefly Bemisia tabaci associated secondary symbiont microbial communities from Neve Yaar, Israel - sample Cardinium_whitefly 3300003435 Metagenome Analysis released by JGI data releasing policy No Yes itaiopa6@gmail.com Itai Opatovsky No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Whitefly Bemisia tabaci associated 32.708101 35.179264 1267782 1378 1 0 1 0 0.0 Metagenome 3300049350 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MBF2 DOE Joint Genome Institute (JGI) 3300049350 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 223990195 619692 305 7 603 11 Unrestricted 7.01 Metagenome 3300071100 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_001-M-20190618-COMP-DNA1 3300071100 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 2679321 8646 27 5 51 9 0.0 Metagenome 3300002241 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Olavius algarvensis symbiont microbial communities from Tuscany, Italy - Type A ELBA extract 3 DOE Joint Genome Institute (JGI) 3300002241 Metagenome Analysis SOAPdenovo v. Version 1.05: testing... 2010 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 42.8072 10.1411 858913538 2847403 25 61 48 39 SRX3322759 Unrestricted 0.0 Metagenome 3300040723 *Microbiome Finished Hotspring water microbial communities from Chignahuapan, Puebla, Mexico Hot spring water microbial communities from Chignahuapan, Puebla, Mexico - S1 Instituto de Biotecnologia, UNAM 3300040723 Metagenome Analysis MEGAHIT v. 1.2.9 released by JGI data releasing policy No Yes hugo.castelansnc@uaem.edu.mx Hugo Gildardo Castelan Sanchez No Environmental Aquatic Hot (42-90C) Thermal springs Neutral hot spring water 19.8333 -98.0333 7 6358531 13482 11 1 31 1 0.0 Metagenome 3300024987 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_300_biof (SPAdes) DOE Joint Genome Institute (JGI) 3300024987 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioremediation Unclassified Thiocyanate Unclassified Wastewater bioreactor -33.936637 18.478905 280019008 367005 110 11 127 22 SRX2576696 Unrestricted 0.0 Metagenome 3300065658 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 828b in Grassy Lake, Alberta, Canada - S00JY_0058 Microbiome Insights 3300065658 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.425784 -111.460018 134418720 199916 64 2 111 5 0.0 Metagenome 3300050473 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - E10W0 DOE Joint Genome Institute (JGI) 3300050473 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 195009310 352112 213 52 398 78 Unrestricted 15.28 Metagenome 3300050294 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_56 DOE Joint Genome Institute (JGI) 3300050294 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -75.662 158.876 271020341 418824 34 13 41 22 SRX18235986 Restricted 41.5 Metagenome 3300020015 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - U1m1 DOE Joint Genome Institute (JGI) 3300020015 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9228 -106.9541 177655773 407390 231 29 470 34 SRX3958582, SRX3958581 Unrestricted 0.0 Metagenome 3300040779 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Etang de Berre, Marignane, France - D29a Genopole Toulouse Midi-Pyrenees 3300040779 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.4847 5.188 141424979 285735 168 21 270 29 0.0 Metagenome 3300022469 *Microbiome Permanent Draft Oil well microbial communities from petroleum reservoir, Santos, SP, Brazil - 6029 - 6172 Oil well microbial communities from petroleum reservoir, Santos, SP, Brazil - 6029 - 6172 Federal University of Rio Grande do Norte 3300022469 Metagenome Analysis Geneious10.2.3 released by JGI data releasing policy No Yes lfagnez@ufrnet.br Lucymara Agnez-Lima No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil reservoir -23.9561 -46.3264 551587424 2452462 2451647 37 0 0 0.0 Metagenome 3300031751 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24 DOE Joint Genome Institute (JGI) 3300031751 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1928615312 4734311 439 2 769 2 SRX5817225 Unrestricted 13.45 Metagenome 3300037406 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_C3 DOE Joint Genome Institute (JGI) 3300037406 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 559756734 1157710 279 54 410 92 SRX9146879 Unrestricted 7.43 Metagenome 3300046757 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_170531.NP2 DOE Joint Genome Institute (JGI) 3300046757 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 564525646 1159524 371 57 569 98 Unrestricted 13.22 Metagenome 3300007934 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 765620695 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007934 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 5212991 9701 6 0 10 1 SRX024916 0.0 Metagenome 3300031943 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2 DOE Joint Genome Institute (JGI) 3300031943 Metagenome Analysis spades v. 3.12.0 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Bulk soil soil 39.6475 -79.9369 1705815074 4298207 1186 21 2215 40 SRX5809335 Unrestricted 7.67 Metagenome 3300044660 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3E1 DOE Joint Genome Institute (JGI) 3300044660 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Unclassified Roots Unclassified Root 14.75 -16.85 867996824 1301223 11 25 41 59 Unrestricted 27.83 Metagenome 3300043216 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_500m_C5_10cm15cm (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043216 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 37.0366 -121.2986 107929197 174337 80 0 161 0 SRX9141401 Unrestricted 76.88 Metagenome 3300039237 *Microbiome Permanent Draft Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada - high-flow bush EMw1 Dalhousie University 3300039237 Metagenome Analysis Megahit v. 1.2.8 released by JGI data releasing policy No Yes smurdock@uvic.ca Sheryl Murdock No Environmental Aquatic Hydrothermal vents Marine Tubeworm bush tubeworm bush 47.9501 -129.0971 805878359 1579913 788 42 1169 55 0.0 Metagenome 3300061683 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0596 Microbiome Insights 3300061683 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 437860685 609355 113 3 160 7 0.0 Metagenome 3300025009 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado, USA - Groundwater F1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025009 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 26083755 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.53 -107.78 229619307 412096 222 7 310 13 SRX1668435, SRX764833 Unrestricted 0.0 Metagenome 3300005543 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG DOE Joint Genome Institute (JGI) 3300005543 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 4904054358 14121078 3358 171 5587 328 SRX2740367 Unrestricted 0.0 Metagenome 3300029385 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 091_5_3_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029385 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 247692059 317970 230 0 342 0 0.0 Metagenome 3300009413 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 DOE Joint Genome Institute (JGI) 3300009413 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 39.48 6.37 322379662 643379 200 0 298 0 SRX2753804 Unrestricted 0.0 Metagenome 3300029557 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35705 Beijing Genomics Institute (BGI) 3300029557 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 161372204 204334 116 0 175 0 0.0 Metagenome 3300059426 *Microbiome Permanent Draft Sorghum rhizosphere and bulk soil microbial communities from University of Arizona Maricopa Agricultural Center, AZ, USA Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 DOE Joint Genome Institute (JGI) 3300059426 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes laurameredith@email.arizona.edu Laura Meredith No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 33.07735 -111.974819 353332590 889046 493 18 924 29 Unrestricted 7.32 Metagenome 3300028448 *Microbiome Permanent Draft Extreme environments viral communities from various locations Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 300m DOE Joint Genome Institute (JGI) 3300028448 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Mesopelagic Marine Unclassified seawater 34.0321 27.821 38140699 107480 4 3 2 9 SRX5249176 Unrestricted 126.54 Metagenome 3300017773 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 9 SPOT_SRF_2010-03-24 DOE Joint Genome Institute (JGI) 3300017773 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 449193280 1066454 89 79 135 132 SRX7207071, SRX7207072 Unrestricted 0.0 Metagenome 3300014059 *Microbiome Permanent Draft Activated sludge microbial communities from Shanghai, China Activated sludge microbial communities from Shanghai, China - membrane bioreactor - Membrane foulants Tongji University 3300014059 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified Activated sludge 31.3 121.5 518486530 1281145 322 24 667 43 SRX451165 0.0 Metagenome 3300006879 *Microbiome Permanent Draft Agricultural soil microbial communities from Utah and Georgia to study Nitrogen management Agricultural soil microbial communities from Georgia to study Nitrogen management - Poultry litter 2014 DOE Joint Genome Institute (JGI) 3300006879 Metagenome Analysis MEGAHIT v. 0.1.3 Yes Yes jeanette.norton@usu.edu Jeanette Norton No Environmental Terrestrial Agricultural land Soil Unclassified Agricultural soil 33.8834 -83.4195 2357942695 6643264 13643 145 22113 224 SRX2927602 Unrestricted 0.0 Metagenome 3300034418 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4) (version 4) DOE Joint Genome Institute (JGI) 3300034418 Metagenome Analysis metaspades v. 3.13.0 Yes Yes chenf@umces.edu; bcampb7@clemson.edu Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.149325 -75.288339 449959349 859253 13 0 22 0 SRX3785816, SRX3785815, SRX2745104 Unrestricted 0.0 Metagenome 3300041672 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_16 MetaG AgResearch, New Zealand, Mosgeil 3300041672 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 838382282 1842656 313 26 1077 47 0.0 Metagenome 3300048553 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_161221.NP1 DOE Joint Genome Institute (JGI) 3300048553 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 701898622 1476715 511 61 754 101 Unrestricted 12.32 Metagenome 3300022487 *Microbiome Permanent Draft Human saliva microbial communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva microbial communities from oral cavities of IgA immunodeficiency people from Alicante, Spain - individual 5 Autonomous University of Barcelona 3300022487 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.38 -0.51 25053798 29360 19 0 28 0 0.0 Metagenome 3300042807 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Fresh water mixed with fracking chemicals microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 NMDC pilot DOE Joint Genome Institute (JGI) 3300042807 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Engineered Industrial production Input fracking water Chemical products Unclassified Fresh water mixed with fracking chemicals 40.178 -81.073 395611514 772497 312 52 473 93 SRX2925264 0.0 Metagenome 3300037138 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 P3 30-34 DOE Joint Genome Institute (JGI) 3300037138 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0466 807759379 1394294 221 4 379 11 SRX9169463 Unrestricted 13.3 Metagenome 3300049776 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought DOE Joint Genome Institute (JGI) 3300049776 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 202621598 424579 316 31 544 46 Unrestricted 13.42 Metagenome 3300003794 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 DOE Joint Genome Institute (JGI) 3300003794 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 333072778 548034 217 1 318 0 SRX2770672 Unrestricted 0.0 Metagenome 3300049931 *Microbiome Permanent Draft Marine sediment microbial communities from Pacific Ocean, California, USA Marine sediment microbial communities from Pacific Ocean, California, USA - SSC_C4_L5 DOE Joint Genome Institute (JGI) 3300049931 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pjensen@ucsd.edu Paul r. Jensen No Environmental Aquatic Oceanic Marine Sediment Marine sediment 32.71 -117.38 134355484 224036 108 0 237 0 Unrestricted 19.19 Metagenome 3300000857 *Microbiome Draft Marine sediment archaeal communities from Santa Barbara Basin, CA, that are anaerobic and methane-oxidizing Marine sediment archaeal communities from Santa Barbara Basin, CA, that are anaerobic and methane-oxidizing - ANME Fosmids Round 1 DOE Joint Genome Institute (JGI) 3300000857 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Sediment Marine sediment 34.3874 -119.71 9673283 13828 0 0 6 0 Unrestricted 0.0 Metagenome 3300004050 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLA_D2 DOE Joint Genome Institute (JGI) 3300004050 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.224518 -122.019257 740316716 2384595 810 12 1645 18 SRX7142960 Unrestricted 0.0 Metagenome 2081372001 *Microbiome Permanent Draft Marine microbial communities from Deepwater Horizon Oil Spill Marine microbial communities from Deepwater Horizon Oil Spill, sample DHOS OV011 DOE Joint Genome Institute (JGI) 2081372001 Metagenome Analysis released based on JGI ITS No Yes janet.jansson@pnnl.gov, janet.jansson@pnnl.gov; omason@fsu.edu Janet Jansson, Janet Jansson; Olivia Mason Yes 22717885 Environmental Aquatic Oceanic Marine Oil-contaminated Marine 28.672222 -88.4375 23846686 54273 0 0 0 0 Unrestricted 0.0 Metagenome 3300031837 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_1 DOE Joint Genome Institute (JGI) 3300031837 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 1519437256 3026525 635 153 925 213 SRX6409914 Unrestricted 13.86 Metagenome 3300027172 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF038 (SPAdes) DOE Joint Genome Institute (JGI) 3300027172 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 90314145 253852 55 2 117 9 SRX2014394 Unrestricted 0.0 Metagenome 7000000477 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 764447348 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000477 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 10542878 20706 0 0 0 0 SRX024119 0.0 Metagenome 3300005911 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKK DOE Joint Genome Institute (JGI) 3300005911 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli, Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 290605516 649784 275 4 486 8 SRX2746613 Unrestricted 0.0 Metagenome 3300028189 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_135m DOE Joint Genome Institute (JGI) 3300028189 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified marine 48.6 -123.5 449905649 856501 305 32 448 68 SRX5244714 Unrestricted 24.99 Metagenome 3300023277 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S6 Version 2 University of New South Wales 3300023277 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 47685343 85213 4 12 10 20 0.0 Metagenome 3300002783 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A2-10 DOE Joint Genome Institute (JGI) 3300002783 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 196496 667 22 1 36 2 SRX1991110 Unrestricted 0.0 Metagenome 3300009979 *Microbiome Permanent Draft Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG DOE Joint Genome Institute (JGI) 3300009979 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes esinger@lbl.gov; twoyke@lbl.gov Esther Singer; Tanja Woyke No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass associated 30.387 -97.7301 32258315 66325 56 1 98 3 SRX3197606 Unrestricted 0.0 Metagenome 3300035248 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Soil microbial communities from Oregon, United States - Field_Oregon_3 DOE Joint Genome Institute (JGI) 3300035248 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Environmental Terrestrial Agricultural land Soil Bulk soil soil 46.1125 -122.987 961229761 2421922 671 27 1280 45 SRX8290694 Unrestricted 7.13 Metagenome 3300046517 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere DOE Joint Genome Institute (JGI) 3300046517 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1211 -123.2696 1641698899 2746435 430 118 691 129 Unrestricted 14.43 Metagenome 3300030029 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37103 Beijing Genomics Institute (BGI) 3300030029 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 204616336 282405 190 1 287 0 0.0 Metagenome 3300031511 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-20 DOE Joint Genome Institute (JGI) 3300031511 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.759 -70.891 545439724 1147130 385 0 649 4 SRX5358336 Unrestricted 10.01 Metagenome 3300008611 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 823052294 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008611 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 164589353 232752 109 1 120 0 0.0 Metagenome 3300040633 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_047-M-20170614-COMP-DNA1 Battelle Memorial Institute 3300040633 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 2491598 7906 27 4 36 6 0.0 Metagenome 3300008476 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 158944319 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008476 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 3453026 5445 3 0 6 0 0.0 Metagenome 3300040378 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 097_R1_022417 University of Maryland 3300040378 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.71338889 27.08244444 5891346 12245 21 3 55 4 0.0 Metagenome 3300024257 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_150_MG DOE Joint Genome Institute (JGI) 3300024257 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca; shallam@interchange.ubc.ca Sean Crowe; Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5847 -123.5008 443353158 843294 331 8 502 14 SRX4488474 Unrestricted 63.61 Metagenome 3300010288 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from South Africa to study Microbial Dark Matter (Phase II) - Tshipise hot spring metaG DOE Joint Genome Institute (JGI) 3300010288 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring -22.6092 30.1749 309030554 610928 382 6 593 9 SRX2525297 Unrestricted 0.0 Metagenome 3300014105 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_017 The George Washington University (GWU) 3300014105 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 18373844 44095 33 7 59 12 SRX656273 0.0 Metagenome 3300029717 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36667 Beijing Genomics Institute (BGI) 3300029717 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 262704690 351173 206 1 329 0 0.0 Metagenome 3300045433 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Missouri River, Nebraska, USA - NASQAN2011_060 DOE Joint Genome Institute (JGI) 3300045433 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 41.2588 -95.9225 374140266 937931 443 110 917 162 Unrestricted 0.0 Metagenome 2077657001 *Microbiome Permanent Draft Sulfur spring sediment and crust microbial communities from Zodletone, Oklahoma, USA Sulfur spring sediment and crust microbial communities from Zodletone, Oklahoma, USA - B3 Mogene LC 2077657001 Metagenome Analysis none (individual reads) released per JGI data release policy No Yes aspain@ou.edu Anne M. Spain, Anne Spain No Environmental Aquatic Warm (34-42C) Thermal springs Sediment Sulfur spring sediment and crust 35.100293 -98.749601 6.68-7.05 39374125 112522 22 0 484 0 0.0 Metagenome 3300042681 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A55 University of California, Davis 3300042681 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 264492404 738231 352 9 630 15 0.0 Metagenome 3300007630 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1555C-02 DOE Joint Genome Institute (JGI) 3300007630 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2024 -123.9409 316631636 613784 316 21 487 30 SRX2753739 Unrestricted 0.0 Metagenome 3300025155 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 4 (version 2) DOE Joint Genome Institute (JGI) 3300025155 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 843480685 1876415 705 8 1339 14 SRX1983917 Unrestricted 0.0 Metagenome 3300027626 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius algarvensis Type A CAVOLI.2 (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300027626 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 823776709 858578 5 3 6 2 SRX2712538 Unrestricted 0.0 Metagenome 3300015207 *Microbiome Permanent Draft Mouse gut microbial communities from Hong Kong to study the effect of probiotic LGG Mouse gut microbial communities from Hong Kong to study the effect of probiotic LGG - Drug W8 University of Hong Kong 3300015207 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 22.3356 114.1826 376484438 726429 308 0 560 3 SRX1153581 0.0 Metagenome 3300069470 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_032-M-20160720-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069470 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 47710947 145112 121 10 250 13 0.0 Metagenome 3300060291 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F2P_40_42 DOE Joint Genome Institute (JGI) 3300060291 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.97683846 -81.7074257 2436168325 3539225 969 3 1469 1 Unrestricted 23.83 Metagenome 3300000976 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY71 J. Craig Venter Institute (JCVI) 3300000976 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 919132919 2773683 177 76 479 158 0.0 Metagenome 3300000731 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 34 DOE Joint Genome Institute (JGI) 3300000731 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 45582409 127962 92 0 163 0 SRX4340828 Unrestricted 0.0 Metagenome 3300039026 *Microbiome Permanent Draft Industrial fuel microbial communities from aircraft samples near Hamburg, Germany Industrial fuel microbial communities from aircraft samples near Hamburg, Germany - 190925_025_001 HPI Heinrich-Pette-Institut 3300039026 Metagenome Analysis MetaSpades v. 3.1 released by JGI data releasing policy No Yes wolfgang.streit@uni-hamburg.de; ines.krohn@uni-hamburg.de Wolfgang Streit; Ines KROHN No Engineered Industrial production Unclassified Engineered product Unclassified Industrial fuel 53.338 9.5152 126088461 218514 46 23 98 36 0.0 Metagenome 3300044964 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - CSA2D DOE Joint Genome Institute (JGI) 3300044964 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 1116058138 1969881 526 33 951 46 Unrestricted 15.17 Metagenome 3300047502 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2017 MH01_10cm DOE Joint Genome Institute (JGI) 3300047502 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.358 19.0415 240008803 413901 205 6 411 9 Restricted 30.12 Metagenome 3300017639 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - SX13-01 University of Michigan 3300017639 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.56518 -85.61352 65832794 97826 41 1 52 0 0.0 Metagenome 3300028167 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_06_06_120m DOE Joint Genome Institute (JGI) 3300028167 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 318056209 652075 411 1 672 3 SRX5244776 Unrestricted 15.86 Metagenome 3300006135 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t1_690P_inflammed - viral_metagenome University of Texas Southwestern Medical Center 3300006135 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 66015814 105601 78 0 92 0 0.0 Metagenome 3300054065 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin06_30_metaG re-annotation DOE Joint Genome Institute (JGI) 3300054065 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1323106696 2695851 510 13 796 26 SRX3292991 0.0 Metagenome 3300001865 *Microbiome Permanent Draft Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA - Biofuel metagenome 5 DOE Joint Genome Institute (JGI) 3300001865 Metagenome Analysis Yes Yes hrbeller@lbl.gov Harry Beller Yes 29556105 Engineered Bioreactor Unclassified Anaerobic Unclassified Bioreactor 37.8754404 -122.2477251 210636371 320348 187 1 267 1 SRX2553648 Unrestricted 0.0 Metagenome 3300032223 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime Ecozone, Canada - Lake 07-009 Genome Quebec 3300032223 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.974936 -64.37633 709504981 1488826 368 79 608 163 0.0 Metagenome 3300025300 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025300 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 39.48 5.24 260700034 576970 68 0 94 0 SRX2753824 Unrestricted 0.0 Metagenome 3300040972 *Microbiome Permanent Draft Human fecal and environmental microbial communities from Peru and El Salvador Urban soil microbial communities from El Salvador - 402 Washington University in St. Louis 3300040972 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Unclassified Soil Unclassified Urban soil 13.5050453 -89.2967661 14763832 23578 26 0 32 0 0.0 Metagenome 3300040394 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Taiga, AK, USA - HEAL_045-O-20160727-COMP-DNA1 Battelle Memorial Institute 3300040394 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.87569 -149.21334 5444421 16027 25 2 40 2 0.0 Metagenome 3300007506 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila suzukii male 3 gut Cornell University 3300007506 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy Yes Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila suzukii male adult gut 42.875296 -77.006403 494680444 507758 4 32 4 51 0.0 Metagenome 3300047467 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 soil DOE Joint Genome Institute (JGI) 3300047467 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Botanical garden Soil Bulk soil Soil 44.5874 -123.1932 555719622 1009049 296 15 583 26 Unrestricted 19.63 Metagenome 3300044547 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME08Jun2012-rr0906 DOE Joint Genome Institute (JGI) 3300044547 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 780466292 1195862 305 66 415 84 Unrestricted 19.15 Metagenome 3300053125 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere DOE Joint Genome Institute (JGI) 3300053125 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121579 -123.269208 354960388 664631 201 78 291 110 Unrestricted 13.14 Metagenome 3300001818 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM19, ROCA_DNA029_2.0um_3a 3300001818 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River plume Marine Plankton Marine plankton 7.2875 -53.0005 5833884 14361 10 10 27 27 0.0 Metagenome 3300051215 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Golan Heights, Israel - jordanrivershai4_2019_sw_WHONDRS-S19S_0058 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300051215 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 32.8993 35.6136 239788970 398258 342 83 608 121 Unrestricted 0.0 Metagenome 3300034034 *Microbiome Permanent Draft Deception Metagenome Glacier sediment microbial communities near Fumarole Bay, Deception Island, Antarctica - FBC1 The Brazilian National Council for Scientific and Technological Development (CNPq) 3300034034 Metagenome Analysis IDBA-ud v. 1.1.1 released per Amanda Bendia -- GOLD-1013 No Yes amandagbendia@gmail.com Amanda Bendia No Environmental Aquatic Ice Freshwater Glacier glacier sediment -62.96 -60.71 44998963 66296 17 2 29 3 0.0 Metagenome 3300070579 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_038-O-20200804-COMP-DNA1 Battelle Memorial Institute 3300070579 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 46.232249 -89.534573 3.99 13020702 41694 61 3 111 8 0.0 Metagenome 3300013370 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -PQiagenBeadWash928-12 Weill Cornell Medical College 3300013370 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.96 58631966 90444 21 0 31 1 SRX823467 0.0 Metagenome 3300039199 *Microbiome Permanent Draft Freshwater sediment microbial communities from Chandeleur Islands, USA Vegetated sediment core microbial communities from Chandeleur Islands, USA - AVegC3 University of Alabama 3300039199 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Wetlands Freshwater Sediment Vegetated sediment core 29.862806 -88.841194 10637183 29839 32 1 68 1 0.0 Metagenome 3300047489 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lake Yojoa, Honduras - Yojoa_01_2020_E_meta (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047489 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Lake Freshwater Unclassified Freshwater 14.8744 -87.9835 616741814 1102754 338 99 551 158 Unrestricted 0.0 Metagenome 3300027809 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027809 Metagenome Analysis spades v. 3.11.1 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.0936 -100.2988 830736449 2074079 690 108 1473 177 SRX2124701 Unrestricted 0.0 Metagenome 3300070441 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Northern Great Plains Research Laboratory, North Dakota, USA - NOGP_006-M-20200701-COMP-DNA1 3300070441 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 5984148 19073 48 5 93 10 0.0 Metagenome 3300021356 *Microbiome Permanent Draft Coastal seawater microbial communities from Pivers Island, North Carolina, United States Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245 DOE Joint Genome Institute (JGI) 3300021356 Metagenome Analysis spades v. 3.11.1-check Yes Yes dana.hunt@duke.edu Dana Hunt No Environmental Aquatic Coastal Marine Unclassified seawater 34.7181 -76.6707 1051503500 2341335 619 196 906 281 SRX4010390 Unrestricted 13.84 Metagenome 3300030643 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from healthy individual in Houston, USA - MG100162 University of Michigan 3300030643 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 29.76 -95.37 13016886 25300 28 0 59 0 0.0 Metagenome 3300003379 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S PM DOE Joint Genome Institute (JGI) 3300003379 Metagenome Analysis revert back to private per Christa Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 13561632 37194 171 20 272 22 SRX2574900 Unrestricted 0.0 Metagenome 3300033804 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_0_20 DOE Joint Genome Institute (JGI) 3300033804 Metagenome Analysis spades v. 3.13.0 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Unclassified peatland -6.3272 -74.8136 347655460 898049 433 7 765 10 SRX7525165 Unrestricted 7.17 Metagenome 3300045238 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_5_E DOE Joint Genome Institute (JGI) 3300045238 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 192144734 234845 116 1 136 1 Unrestricted 100.41 Metagenome 3300014350 *Microbiome Permanent Draft Wastewater microbial communities from lab-scale CANDO bioreactor activated sludge, Evanston, Illinois, US Wastewater microbial communities from lab-scale CANDO bioreactor activated sludge, Evanston, Illinois, US - Sep_17_2015 Beijing Genomics Institute (BGI) 3300014350 Metagenome Analysis CLC Bio 6.0.2 released by JGI data releasing policy Yes Yes hangao2017@u.northwestern.edu Han Gao No Engineered Bioreactor Unclassified Aerobic Unclassified synthetic wastewater 42.057879 -87.67651 684970734 996959 108 7 176 13 0.0 Metagenome 3300013245 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100364 University of Pennsylvania 3300013245 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 18108749 27793 16 7 33 15 SRX756293 0.0 Metagenome 3300012431 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100423 University of Pennsylvania 3300012431 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 5406454 15252 10 0 16 0 SRX756575 0.0 Metagenome 3300015683 *Microbiome Permanent Draft Microbial communities associated with sugarcane Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_F04 Universidade Estadual de Campinas 3300015683 Metagenome Analysis Spades released by JGI data releasing policy No Yes scs.rafael@gmail.com Rafael Souza No Host-associated Plants Rhizosphere Roots Unclassified rizhosphere -22.8187222 -47.05896667 7968855 8626 4 0 6 0 0.0 Metagenome 3300036841 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_Dec_plot1_rep3 DOE Joint Genome Institute (JGI) 3300036841 Metagenome Analysis metaspades v. 3.13.0 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6539 -80.6288 1976657387 3158082 530 13 908 19 SRX8181494 Unrestricted 14.9 Metagenome 3300009772 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC105_MetaG DOE Joint Genome Institute (JGI) 3300009772 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 22.28 114.17 846857797 1694386 845 11 1460 15 SRX2157913 Unrestricted 0.0 Metagenome 3300013692 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01128 Weill Cornell Medical College 3300013692 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.97 18857487 25841 6 0 11 0 SRX823083 0.0 Metagenome 3300001411 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 415-2 shallow-072012 DOE Joint Genome Institute (JGI) 3300001411 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 14067771 43233 91 40 146 55 SRX1987638 Unrestricted 0.0 Metagenome 3300027661 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus leukodermatus Group 1a BELIZE.1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027661 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 717515316 899272 11 1 9 4 SRX2712317 Unrestricted 0.0 Metagenome 3300001676 *Microbiome Permanent Draft Black smokers hydrothermal plume microbial communities from Tui Malila, Lau Basin, Pacific Ocean Black smokers hydrothermal plume microbial communities from Tui Malila, Lau Basin, Pacific Ocean 3300001676 Metagenome Analysis IDBA-UD Public release per request from Karthik Anantharaman (April 15, 2014) No Yes akarthik@umich.edu Karthik Anantharaman No Environmental Aquatic Hydrothermal vents Marine Black smokers Black smokers hydrothermal plume -21.99002 -176.568744 107945955 143298 17 7 30 8 0.0 Metagenome 3300038576 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark - 1613-PRJ1066-RD-Sewage-108_S12 Technical University of Denmark 3300038576 Metagenome Analysis Yes Yes No Engineered Wastewater Unclassified Sewage Unclassified Sewage 55.640494 12.5058209 10052387 21751 54 2 66 4 ERX1596348 0.0 Metagenome 3300030320 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P086V6 Beijing Genomics Institute (BGI) 3300030320 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 252969706 288021 187 0 272 0 0.0 Metagenome 3300047535 *Microbiome Permanent Draft Floating fern leaf microbial communities from various locations Floating fern leaf microbial communities from Munakata, Japan - 0515_IRRI DOE Joint Genome Institute (JGI) 3300047535 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dave.armitage@gmail.com David Armitage No Host-associated Plants Phylloplane/Leaf Phyllosphere Endophytes Leaf 33.8296 130.5557 92653925 145563 8 17 17 16 Unrestricted 202.91 Metagenome 3300020342 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000674 (ERX556117-ERR599036) CEA Genoscope 3300020342 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -9.1552 -140.5284 294684326 737725 343 14 544 38 0.0 Metagenome 3300029054 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 281_M Beijing Genomics Institute (BGI) 3300029054 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 161488493 211261 126 0 202 0 ERX491070 0.0 Metagenome 3300039061 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Sweden Sewage microbial communities from sewage treatment plant in Sweden - SWESTP32 - Uppsala-influent-AD 144 University of Gothenburg 3300039061 Metagenome Analysis Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified sewage 59.844519 17.659844 113873363 285738 272 16 521 22 0.0 Metagenome 3300002528 *Microbiome Permanent Draft Marine microbial communities from oxygen minimum zone in the mesopelagic equatorial Pacific Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_800m DOE Joint Genome Institute (JGI) 3300002528 Metagenome Analysis Yes Yes cdupont@jcvi.org Chris Dupont, Chris L. Dupont No Environmental Aquatic Oceanic Marine Unclassified Marine 8.0 -156.0 166925968 349989 220 23 389 39 SRX1990988 Unrestricted 0.0 Metagenome 3300042470 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME22Aug2015-rr0493 DOE Joint Genome Institute (JGI) 3300042470 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1384678840 2056389 500 109 708 167 Unrestricted 19.22 Metagenome 3300006102 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013 DOE Joint Genome Institute (JGI) 3300006102 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment watersheds 41.1752 -78.4168 3465202993 11702743 2675 194 5091 383 SRX2839526 Unrestricted 0.0 Metagenome 3300007117 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge Stylissa sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - st20is University of New South Wales 3300007117 Metagenome Analysis ISBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au, e.botte@aims.gov.au; n.webster@aims.gov.au Nicole Webster, Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Stylissa sp. (marine sponge) -9.40556 150.816667 156144955 373979 31 12 42 18 0.0 Metagenome 3300019698 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FRC_2-3_MG DOE Joint Genome Institute (JGI) 3300019698 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 69674590 180635 205 10 367 21 SRX3983339 Unrestricted 3.32 Metagenome 3300001122 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0261 DOE Joint Genome Institute (JGI) 3300001122 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -3.03 -27.33 22278361 47526 35 15 65 17 SRX1983334 Unrestricted 0.0 Metagenome 3300003778 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_9/17/2007_ DNA DOE Joint Genome Institute (JGI) 3300003778 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 174133850 306064 167 5 248 9 SRX2713111 Unrestricted 0.0 Metagenome 3300012838 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - HID1975M_E6 MG DOE Joint Genome Institute (JGI) 3300012838 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 91776069 133909 93 0 107 0 SRX3564649 Unrestricted 0.0 Metagenome 3300032675 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18015 DOE Joint Genome Institute (JGI) 3300032675 Metagenome Analysis spades v. 3.13.0 Yes Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.0411 -89.6861 593094171 1101622 317 31 498 48 SRX7891302 Unrestricted 22.5 Metagenome 3300049247 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB33 DOE Joint Genome Institute (JGI) 3300049247 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 49217145 130364 153 3 367 4 Unrestricted 21.6 Metagenome 3300003212 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08K1-12 DOE Joint Genome Institute (JGI) 3300003212 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 515448 1701 18 0 30 1 SRX2576176 Unrestricted 0.0 Metagenome 3300041933 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from the Rocky Mountain Biological Laboratory (RMBL), Gothic, Colorado, United States - 2018WM_9C DOE Joint Genome Institute (JGI) 3300041933 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9595 -106.99 134161572 396756 199 12 376 15 SRX14810858 Unrestricted 8.07 Metagenome 3300036448 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C6-1C DOE Joint Genome Institute (JGI) 3300036448 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 94646466 306095 219 5 407 14 SRX8803460 Unrestricted 4.34 Metagenome 3300017412 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12SEP2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017412 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 280317488 525556 126 222 189 366 SRX3926325 Unrestricted 6.34 Metagenome 3300038395 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from Labiotermes sp. nest - French Guiana - 19_62_13_hindgut University of Luxembourg 3300038395 Metagenome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Hindgut Digestive system Unclassified termite gut 5.3055556 -53.22805556 641737827 803235 58 6 70 6 0.0 Metagenome 3300004758 *Microbiome Permanent Draft Metagenomics analysis of sediments collected from Formosa Ridge Marine sediment microbial communities from Formosa Ridge, offshore Taiwan - G2-3 Beijing Genomics Institute (BGI) 3300004758 Metagenome Analysis SOAPdenovo (version 1.05) released per JGI data release policy No Yes mclai01@gmail.com Mei-Chin Lai No Environmental Aquatic Cold seeps Marine Sediment Marine sediment 22.10811667 119.29126667 6645689 13270 19 2 32 5 0.0 Metagenome 3300011427 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT418_2 DOE Joint Genome Institute (JGI) 3300011427 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9778 -107.0023 368525011 850662 431 37 913 55 SRX3539347 Unrestricted 0.0 Metagenome 3300014132 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_132 The George Washington University (GWU) 3300014132 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 23442404 48863 21 3 53 3 SRX656282 0.0 Metagenome 3300070848 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_044-O-20180806-COMP-DNA1 3300070848 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 1170340 3976 24 0 43 1 0.0 Metagenome 3300006641 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA DOE Joint Genome Institute (JGI) 3300006641 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 1534215455 4217285 1048 183 1784 354 SRX2855130 Unrestricted 0.0 Metagenome 3300022798 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S8 Version 2 University of New South Wales 3300022798 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 51468353 90843 34 1 50 4 0.0 Metagenome 3300042588 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A16 University of California, Davis 3300042588 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 260240077 726727 360 13 635 21 0.0 Metagenome 3300041460 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG AgResearch, New Zealand, Mosgeil 3300041460 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Rhizoplane Roots Dairy farm pasture -43.648506 172.343549 1223812670 2773975 284 42 875 117 0.0 Metagenome 3300029543 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P083V1 Beijing Genomics Institute (BGI) 3300029543 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 160048083 199781 119 0 168 0 0.0 Metagenome 3300003604 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter A (PS_A) MetaG DOE Joint Genome Institute (JGI) 3300003604 Metagenome Analysis Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Thermal spring 44.376 -110.69 62639124 104828 40 0 62 0 SRX2577258 Unrestricted 0.0 Metagenome 3300009009 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015 DOE Joint Genome Institute (JGI) 3300009009 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wilkins.231@osu.edu, mike.wilkins@colostate.edu Michael Wilkins Yes 30086797 Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0991 -99.1044 1389318173 2929380 1241 38 2297 70 SRX2753787 Unrestricted 0.0 Metagenome 3300025413 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE23Jun09 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025413 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 155291481 333147 80 40 120 62 SRX2565134 Unrestricted 0.0 Metagenome 3300049737 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_111214.NP2 DOE Joint Genome Institute (JGI) 3300049737 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 591312558 1282807 475 101 787 182 Unrestricted 11.46 Metagenome 3300012130 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Florida, USA - TSFL048 MetaG DOE Joint Genome Institute (JGI) 3300012130 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 28.571 -82.2848 130039288 234189 38 117 53 202 SRX3539500 Unrestricted 0.0 Metagenome 3300055554 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.16C.11 SIP fraction DOE Joint Genome Institute (JGI) 3300055554 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 220232861 430102 152 33 275 51 Unrestricted 10.87 Metagenome 3300000843 *Microbiome Permanent Draft Freshwater and marine microbial communities from the Columbia River, USA, of estuaries and plumes across salinity gradients Freshwater microbial communities from the Columbia River, along salinity gradients University of Maryland 3300000843 Metagenome Analysis released per PI's request No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato Yes 26536246 Environmental Aquatic Lotic Freshwater Unclassified Freshwater and marine 46.184 -123.182 5297491 13316 554 217 1656 564 0.0 Metagenome 3300049458 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 soil DOE Joint Genome Institute (JGI) 3300049458 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.587646 -123.193454 6.71 268571341 512817 222 23 476 27 Unrestricted 24.09 Metagenome 3300048547 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_201125.NP1 DOE Joint Genome Institute (JGI) 3300048547 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 683654382 1412185 436 71 652 142 Unrestricted 11.88 Metagenome 3300002139 *Microbiome Permanent Draft Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds M3t2BS2 (117f) 3300002139 Metagenome Analysis released by JGI data releasing policy No Yes daniel.herlemann@io-warnemuende.de, daniel.herlemann@emu.ee Daniel Herlemann, Daniel P. Herlemann No Environmental Aquatic Unclassified Unclassified Unclassified Marine 65.3915 23.49916667 216552021 1042844 260 41 569 63 0.0 Metagenome 3300023027 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung D0 DOE Joint Genome Institute (JGI) 3300023027 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Elk feces 38.04 -122.5 53325839 147752 347 2 643 3 SRX4415385 Unrestricted 7.07 Metagenome 3300028733 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E2_4 DOE Joint Genome Institute (JGI) 3300028733 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 394598400 981532 291 29 458 54 SRX5356662 Unrestricted 0.0 Metagenome 3300044472 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - WIN7-9-19-19 DOE Joint Genome Institute (JGI) 3300044472 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.3975 -120.625 480733269 1204374 419 39 729 66 Restricted 6.58 Metagenome 3300026537 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_05_40cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026537 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 749135583 1299456 391 6 615 7 SRX2727805 Unrestricted 0.0 Metagenome 3300046743 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_170809.NP2 DOE Joint Genome Institute (JGI) 3300046743 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 624219575 1302954 369 75 617 120 Unrestricted 11.33 Metagenome 3300008565 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158499257 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008565 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 153708850 246353 143 0 231 1 0.0 Metagenome 3300026811 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A4w-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026811 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 26383494 87227 106 2 169 2 SRX1991248 Unrestricted 0.0 Metagenome 3300043452 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Logan River, Logan, Utah, USA - logan2_2019_sw_WHONDRS-S19S_0098 DOE Joint Genome Institute (JGI) 3300043452 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 41.9503 -111.5804 361856174 584409 324 129 552 181 Unrestricted 20.4 Metagenome 3300042056 *Microbiome Permanent Draft Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - Dsc2_a23.5 Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042056 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1237 -89.1404 313367761 473848 12 10 23 18 SRX5234788 0.0 Metagenome 3300005557 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_12_40cm DOE Joint Genome Institute (JGI) 3300005557 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2433941118 6923133 2308 39 3877 79 SRX2728411 Unrestricted 0.0 Metagenome 2236876004 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Estuarine microbial communities from Columbia River, sample from South Channel ETM site, GS313-0p1-ETM-15m University of South Carolina 2236876004 Metagenome Analysis No Yes mariyasmit@hotmail.com Mariya Smit, Mariya W. Smit No Environmental Aquatic Intertidal zone Marine Estuary Marine estuarine 46.249 -123.986 200914161 619194 402 11 784 18 0.0 Metagenome 3300031665 *Microbiome Permanent Draft Rhizosphere microbial communities from salt marsh grasses in Alabama, United States Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 DOE Joint Genome Institute (JGI) 3300031665 Metagenome Analysis spades v. 3.12.0 Yes Yes omason@fsu.edu Olivia Mason No Host-associated Plants Rhizosphere Roots Unclassified rhizosphere 30.2619 -88.2383 1095380508 2649985 1020 17 1804 30 SRX5821830 Unrestricted 6.99 Metagenome 3300031957 *Microbiome Finished The variation of viral communities during algal boom from the coastal of Qingdao, China Marine viral communities from the Yellow sea, Qingdao, China - WS0727 Beijing Novogene Bioinformatics Technology Co., Ltd 3300031957 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes foodyqw_12@163.com Yang Qingwei No Environmental Aquatic Coastal Marine Unclassified marine 36.062 120.38 345424861 571477 101 3 133 7 0.0 Metagenome 3300020613 *Microbiome Permanent Draft Deep subsurface rock core microbial communities from Deccan traps, Ukhalu, Maharashtra, India Deep subsurface rock core microbial communities from Deccan traps, Ukhalu, Maharashtra, India - U7_55 Marine Biological Laboratory 3300020613 Metagenome Analysis Spades 3.10.1 released by JGI data releasing policy No Yes avishekdutta14@gmail.com; psar@hijli.iitkgp.ernet.in Avishek Dutta; Pinaki Sar No Environmental Terrestrial Rock Deep subsurface Unclassified Deep subsurface rock core 17.125867 73.869133 1009333166 2503349 291 35 678 98 0.0 Metagenome 3300008518 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764508039 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008518 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 116454710 143046 81 0 86 0 0.0 Metagenome 7000000108 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 159611913 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000108 Metagenome Analysis No Yes ipagani@lbl.gov Ionna Pagani No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 100370295 164650 0 0 0 0 0.0 Metagenome 3300030312 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from adenoma patient in Toronto, Canada - MG100200 University of Michigan 3300030312 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 43.65 -79.38 8834132 17128 26 0 40 0 0.0 Metagenome 3300012352 *Microbiome Permanent Draft Freshwater microbial communities from rivers and streams along an organic matter gradient associated with agriculture in Ontario, Canada Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37 Molecular Research LP (MR DNA) 3300012352 Metagenome Analysis metaSPAdes released by JGI data releasing policy No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lotic Freshwater Unclassified Freshwater 44.16961 -78.4089 8.65 329592538 1122038 98 13 196 25 0.0 Metagenome 3300049851 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_B_0_drought DOE Joint Genome Institute (JGI) 3300049851 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 205762236 487891 419 27 839 50 Unrestricted 0.0 Metagenome 3300000937 *Microbiome Permanent Draft Sinkhole freshwater microbial communities from Lake Huron, US Sinkhole freshwater microbial communities from Lake Huron, USA - r2gDNA Day2 University of Michigan 3300000937 Metagenome Analysis Velvet, Metavelvet, Minimus2 released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Sinkhole Freshwater Unclassified Sinkhole freshwater 45.19843 -83.32721 47185146 110773 114 20 137 31 0.0 Metagenome 3300027682 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027682 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 412535417 1065328 494 28 934 47 SRX2574889 Unrestricted 0.0 Metagenome 3300053149 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere DOE Joint Genome Institute (JGI) 3300053149 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.58826 -123.192446 813243717 1201717 143 169 220 266 Unrestricted 16.64 Metagenome 3300015354 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015354 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 482999211 753987 36 310 65 557 SRX3923699 Unrestricted 8.76 Metagenome 3300028679 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N1_3 DOE Joint Genome Institute (JGI) 3300028679 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 618300096 1703208 599 44 1104 84 SRX5355625 Unrestricted 0.0 Metagenome 3300013735 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100443 University of Pennsylvania 3300013735 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17481301 46800 26 0 37 0 SRX756555 0.0 Metagenome 3300022399 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL3WBGP1 JM61 AGRF 3300022399 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996531 115.533257 51098183 79882 31 0 45 0 0.0 Metagenome 3300025979 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025979 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.000706 -121.624306 101222574 230754 179 0 286 0 SRX7144822 Unrestricted 0.0 Metagenome 3300011593 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00382 Weill Cornell Medical College 3300011593 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.68 -73.96 29083962 38065 9 0 15 0 SRX822353 0.0 Metagenome 3300039082 *Microbiome Permanent Draft Agricultural soil microbial communities from Queensland, Australia Agricultural soil microbial communities from Queensland, Australia - baresoil2 University of Queensland 3300039082 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Unclassified Soil Agricultural land Agricultural soil -25.025508 152.379908 7150462 22094 73 3 128 9 0.0 Metagenome 3300011119 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG DOE Joint Genome Institute (JGI) 3300011119 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 3790778556 8630072 3087 234 5214 480 SRX3203329, SRX3203328 Unrestricted 0.0 Metagenome 3300035030 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - T7-7 Autonomous University of Barcelona 3300035030 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 88998892 366826 1202 1 2082 1 0.0 Metagenome 3300017995 *Microbiome Permanent Draft Coastal wetland sediment microbial communities from the Mid-Atlantic and Southeast Atlantic Coast of USA, responding to salinity intrusion. Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1 DOE Joint Genome Institute (JGI) 3300017995 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Freshwater sediment 35.9061 -76.1569 849612087 1793832 494 3 843 9 SRX4367490 Unrestricted 5.49 Metagenome 3300017420 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_07NOV2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017420 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 203608145 402355 151 114 245 172 SRX3927726 Unrestricted 7.74 Metagenome 3300013229 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100463 University of Pennsylvania 3300013229 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 42667982 90900 28 2 49 8 SRX756535 0.0 Metagenome 3300042171 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Marine sediment microbial communities from Algarve, Portugal - SD02 v2 Molecular Research LP (MR DNA) 3300042171 Metagenome Analysis Metawrap workflow v. 1.0.8 released by JGI data releasing policy Yes Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Environmental Aquatic Oceanic Marine Sediment marine sediment 36.979778 -7.989111 1027764 1180 1 1 8 3 0.0 Metagenome 3300003900 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 m-RNA DAY 30 University of Sao Paulo, Virginia Bioinformatics Institute 3300003900 Metagenome Analysis SoapDeNovo 2 released per PI's request No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 40851481 94948 19 46 53 155 0.0 Metagenome 2119805002 *Microbiome Permanent Draft Achromatium oxaliferum microbial communities from Northeastern Germany Achromatium AC252_2511 newbler DOE Joint Genome Institute (JGI) 2119805002 Metagenome Analysis newbler released per Simon -- IMGSUPP2949 No Yes mallgaier@igb-berlin.de Martin Allgaier No Environmental Aquatic Lentic Freshwater Sediment Achromatium oxaliferum 53.151553 13.026172 29451235 71529 1 0 9 0 0.0 Metagenome 3300014893 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 622_B Beijing Genomics Institute (BGI) 3300014893 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 17534904 21577 10 0 13 0 ERX491273 0.0 Metagenome 7000000436 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764487809 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000436 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 81015405 139814 0 0 0 0 0.0 Metagenome 3300005717 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Hot Lake Consortium UCC-R28 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300005717 Metagenome Analysis metalrec v. metalrec version 1.0.2 Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 315943091 630229 245 3 455 1 SRX2575228, SRX2575229, SRX2995877, SRX2575227, SRX2995878, SRX2575231, SRX2575230 Unrestricted 0.0 Metagenome 3300007854 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763901136 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007854 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 38518855 71017 34 0 53 0 0.0 Metagenome 3300031876 *Microbiome Permanent Draft Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP5 DOE Joint Genome Institute (JGI) 3300031876 Metagenome Analysis spades v. 3.12.0 Yes Yes rlsimister@gmail.com Rachel Simister No Environmental Aquatic Lake Freshwater Sediment sediment -2.7726 121.4938 908988222 1902953 784 0 1365 1 SRX6422652 Unrestricted 17.03 Metagenome 3300024243 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_150_MG DOE Joint Genome Institute (JGI) 3300024243 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca; shallam@interchange.ubc.ca Sean Crowe; Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5847 -123.5008 523135620 976494 382 10 595 19 SRX4483164 Unrestricted 55.14 Metagenome 3300003220 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 DOE Joint Genome Institute (JGI) 3300003220 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 51.62 -128.09 84431304 226396 185 48 287 90 SRX2575212 Unrestricted 0.0 Metagenome 3300024304 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from Mancos shale, Colorado, United States - Mancos A_10_July_PB DOE Joint Genome Institute (JGI) 3300024304 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Deep subsurface sediment 38.96 -106.99 51475452 162143 237 19 359 28 SRX4456988 Unrestricted 6.93 Metagenome 3300009155 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG DOE Joint Genome Institute (JGI) 3300009155 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 45.4091 -72.0994 1207935310 2296264 649 113 1125 168 SRX2996444 Unrestricted 0.0 Metagenome 3300023236 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #547 DOE Joint Genome Institute (JGI) 3300023236 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 145971573 262692 95 19 144 22 SRX4397125 Unrestricted 16.82 Metagenome 3300013909 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100144 University of Pennsylvania 3300013909 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 5463653 10471 7 3 13 9 SRX756388 0.0 Metagenome 3300015085 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4B, Ice margin, adjacent to proglacial lake) University of Bristol 3300015085 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.156805 -50.082499 6 112190691 260773 106 9 188 16 0.0 Metagenome 3300012617 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100330 University of Pennsylvania 3300012617 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 25465075 46061 51 0 102 0 SRX756327 0.0 Metagenome 3300050117 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim1 30-34 DOE Joint Genome Institute (JGI) 3300050117 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.352987 19.047292 584845396 801028 131 1 182 2 Restricted 16.25 Metagenome 3300045960 *Microbiome Permanent Draft Sediment microbial communities from various rivers and their estuaries in the United States Sediment microbial communities from Muddy Creek, Maryland, United States - BTRS19_Sengupta_2F DOE Joint Genome Institute (JGI) 3300045960 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sg.aditi@gmail.com Aditi Sengupta No Environmental Aquatic River Freshwater Sediment sediment 38.8876 -76.5619 929958307 1584853 538 46 906 79 Unrestricted 16.51 Metagenome 3300030045 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_3 DOE Joint Genome Institute (JGI) 3300030045 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 725705158 1383743 342 26 497 35 SRX5356845 Unrestricted 10.54 Metagenome 3300009300 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T14 (3) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2) Shell Corporation 3300009300 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 154156037 505690 179 0 337 0 0.0 Metagenome 3300000241 *Microbiome Draft Marine microbial communities from chronically polluted sediments in four geographic locations Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBB sample SWE 21_20.5m DOE Joint Genome Institute (JGI) 3300000241 Metagenome Analysis released based on JGI ITS Yes Yes hdionisi@cenpat.edu.ar Hebe Dionisi No Environmental Aquatic Wetlands Marine Sediment Marine 59.350163 18.107847 341240362 872663 624 37 1055 69 Unrestricted 0.0 Metagenome 3300012958 *Microbiome Permanent Draft Amended soil microbial communities from New York, USA to study carbon cycling Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG DOE Joint Genome Institute (JGI) 3300012958 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes twhitman@wisc.edu Thea Whitman No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.4531 -76.3842 2430626430 5813106 2042 72 3742 146 SRX3566524 Unrestricted 5.06 Metagenome 3300042723 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - L_b14.6 Re-assembly Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042723 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1241 -89.1401 56618517 55173 7 3 9 3 SRX5234786 0.0 Metagenome 3300048660 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - Maria845 DOE Joint Genome Institute (JGI) 3300048660 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Sand Soil Desert sand -78.0575 163.8467 465234896 1008374 338 2 576 3 Unrestricted 0.0 Metagenome 3300023103 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L058-202B-2 DOE Joint Genome Institute (JGI) 3300023103 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 691705532 1506553 710 131 1108 184 SRX4798704 Unrestricted 10.23 Metagenome 3300045040 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-607 Genome Quebec 3300045040 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 55.628822 -118.528498 1179220109 2723796 467 103 776 169 0.0 Metagenome 3300038465 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 S2 5-9 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300038465 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0471 872418054 1536606 271 28 411 45 SRX8138206, SRX8138205 Unrestricted 0.0 Metagenome 3300069588 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Barrow Environmental Observatory, Tundra, AK, USA - BARR_054-O-20170807-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069588 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 71.28241 -156.61936 13226203 39432 52 4 83 4 0.0 Metagenome 3300018059 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex DOE Joint Genome Institute (JGI) 3300018059 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 .65 1188908459 2449699 692 13 1246 27 SRX3938984 Unrestricted 5.82 Metagenome 3300027568 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027568 Metagenome Analysis spades v. 3.11.1 Yes Yes loy@microbial-ecology.net; Michael.Pester@dsmz.de Alexander Loy; Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.1318 11.881 350564562 761802 123 1 187 2 Unrestricted 0.0 Metagenome 3300024448 *Microbiome Permanent Draft Vaginal microbial communities from lab mice Vaginal microbial communities from lab mice with HSV-2 infection, Madrid, Spain - C1, day 1 Polytechnic University of Valencia 3300024448 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Vagina Reproductive system Unclassified mice vagina 40.4191094 -3.6725753 1003209 1576 0 0 0 0 0.0 Metagenome 3300000114 *Microbiome Draft Passalidae beetle gut microbial communities from Costa Rica Passalidae beetle gut microbial communities from Costa Rica -Larvae (3ML+3BL) v1 DOE Joint Genome Institute (JGI) 3300000114 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes davidhs@lsi.umich.edu, davidhs@umich.edu David Sherman No Host-associated Arthropoda: Insects Gut Larva Unclassified Passalidae beetle gut 10.207151 -84.007673 804003313 1802558 884 8 1726 12 Unrestricted 0.0 Metagenome 3300002297 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 17AUG2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002297 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 28229763 71144 73 14 116 16 SRX1989909 Unrestricted 0.0 Metagenome 3300043573 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains ecozone, Canada - Lake 08-177 Genome Quebec 3300043573 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.687068 -79.325113 1173818518 2753105 495 102 828 224 0.0 Metagenome 3300026213 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV73 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026213 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 307882868 687953 263 2 362 3 SRX2782346 Unrestricted 0.0 Metagenome 3300035457 *Microbiome Permanent Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - RDC-1_at_0-1_cm Genome Quebec 3300035457 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.80159 -73.41443 511241741 1352756 812 90 1799 155 0.0 Metagenome 3300008050 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG DOE Joint Genome Institute (JGI) 3300008050 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.51 -76.2 656262767 1429092 76 0 97 1 SRX2752502 Unrestricted 0.0 Metagenome 3300033780 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 E3 1-5 DOE Joint Genome Institute (JGI) 3300033780 Metagenome Analysis spades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0468 76590966 248214 171 14 296 16 SRX8138930, SRX8138929 Unrestricted 0.0 Metagenome 3300044553 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TS6 DOE Joint Genome Institute (JGI) 3300044553 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.4139 99721986 150403 132 8 134 13 SRX12657440 Unrestricted 166.6 Metagenome 3300015173 *Microbiome Permanent Draft Human fecal microbial communities from infant diaper, Dhaka, Bangladesh Human fecal microbial communities from infant diaper, Dhaka, Bangladesh - DMDT001M Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300015173 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes dhtaft@ucdavis.edu Diana Taft No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant feces 23.8103 90.4125 6934864 12542 21 1 29 2 0.0 Metagenome 3300002621 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A3-12 DOE Joint Genome Institute (JGI) 3300002621 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 153690 524 26 1 35 1 SRX1991220 Unrestricted 0.0 Metagenome 3300038418 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P4_D8 DOE Joint Genome Institute (JGI) 3300038418 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 676155493 923196 219 2 321 2 SRX9404378 Unrestricted 41.14 Metagenome 3300027515 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027515 Metagenome Analysis spades v. 3.11.1 Yes Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 417734161 638551 302 0 414 6 SRX2740066 Unrestricted 0.0 Metagenome 3300047397 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Kolyma River, Sakha Republic, Russia - Kolyma 2004-6 DOE Joint Genome Institute (JGI) 3300047397 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 68.75 161.3 581031063 1231110 516 80 837 157 Unrestricted 18.9 Metagenome 3300049253 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA16 DOE Joint Genome Institute (JGI) 3300049253 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 240913298 597895 290 4 531 7 Unrestricted 7.61 Metagenome 2189573000 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms) 454 Life Sciences 2189573000 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.804241 -0.372114 431207308 1181191 353 26 581 47 0.0 Metagenome 3300025265 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP2098 (SPAdes) DOE Joint Genome Institute (JGI) 3300025265 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 14.53 -118.77 126595548 244807 77 0 129 0 SRX1982386 Unrestricted 0.0 Metagenome 3300071144 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone National Park, Wyoming, USA - YELL_002-M-20180711-COMP-DNA1 3300071144 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 7621379 25525 57 6 123 5 0.0 Metagenome 3300003456 *Microbiome Permanent Draft Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S17-KH04B 3300003456 Metagenome Analysis released per JGI data releasing policy No Yes julie.champagne@cnrc-nrc.gc.ca Julie Champagne No Environmental Aquatic Neritic zone/Coastal water Marine Sediment Marine sediment 53.6667 -129.1333 51984049 193771 81 0 146 3 0.0 Metagenome 3300040002 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_058-O-20160719-COMP-DNA1 Battelle Memorial Institute 3300040002 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 16691955 50541 81 1 147 9 0.0 Metagenome 3300001186 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from University of Liverpool 454_1.5ng_assembled University of Liverpool 3300001186 Metagenome Analysis Newbler v2.8 released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 102114 301 8 0 17 0 0.0 Metagenome 3300002052 *Microbiome Permanent Draft Marine sediment microbial communities from White Oak River estuary, North Carolina Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-36_30 DOE Joint Genome Institute (JGI) 3300002052 Metagenome Analysis No Yes acidophile@gmail.com Brett Baker Yes 26824177 Environmental Aquatic Intertidal zone Marine Estuary: Microbial mat Marine sediment 34.640199 -77.109447 406438721 440211 90 3 94 0 SRX3317630 Unrestricted 0.0 Metagenome 3300019708 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BRC_2-3_MG DOE Joint Genome Institute (JGI) 3300019708 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 102161404 256543 235 21 439 37 Unrestricted 3.7 Metagenome 3300025772 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_STIC12_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025772 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 41.84 -87.68 654794067 1294053 471 1 693 5 SRX2338948 Unrestricted 0.0 Metagenome 3300037830 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site2_nosalt_MVII_3 DOE Joint Genome Institute (JGI) 3300037830 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Tidal flats microbial mat 20.7452 58.6625 512438985 1070712 377 2 656 3 SRX9169870 Unrestricted 8.48 Metagenome 3300032073 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416 DOE Joint Genome Institute (JGI) 3300032073 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.7468 -122.0193 3444492351 7436501 1439 448 2354 848 SRX6423002 Unrestricted 13.34 Metagenome 3300026034 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_302 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026034 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 104023446 251880 146 3 262 3 SRX2564564, SRX2581061 Unrestricted 0.0 Metagenome 3300021479 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M DOE Joint Genome Institute (JGI) 3300021479 Metagenome Analysis spades v. 3.11.1-check Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 3313781571 7071593 958 79 1631 157 SRX4030354 Unrestricted 9.11 Metagenome 3300022774 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R7 Version 2 University of New South Wales 3300022774 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 98395081 163607 69 1 87 3 0.0 Metagenome 3300021541 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen10, Rep 3, Penicillin and Streptomycin DOE Joint Genome Institute (JGI) 3300021541 Metagenome Analysis spades v. 3.11.1-check Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4149 -119.841 6190075 8227 12 0 27 0 SRX4038387 Unrestricted 3690.66 Metagenome 3300040464 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Environmental Research Center, Mid-Atlantic, MD, USA - SERC_047-M-20170711-COMP-DNA1 Battelle Memorial Institute 3300040464 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89008 -76.56001 3320771 9702 26 9 56 17 0.0 Metagenome 3300025218 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP-103 (SPAdes) DOE Joint Genome Institute (JGI) 3300025218 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es; mbsulli@gmail.com Silvia G. Acinas; Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 21.0597 -150.4292 128866179 261290 67 3 94 4 SRX4915138 Unrestricted 0.0 Metagenome 3300014627 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00245 Weill Cornell Medical College 3300014627 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.77 -73.98 19890862 26182 14 0 16 0 SRX822224 0.0 Metagenome 3300038537 *Microbiome Permanent Draft Seawater viral communities from Osaka Bay, Japan Seawater viral communities from Osaka Bay, Japan - OBV_V7 Kyoto University 3300038537 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Seawater 34.1928 135.0715 5842307 15304 0 5 5 8 0.0 Metagenome 3300042662 *Microbiome Draft Permafrost soil microbial communities from Adventdalen on Svalbard, Norway Permafrost soil microbial communities from Adventdalen on Svalbard, Norway - Sample5 Baseclear 3300042662 Metagenome Analysis Velvet v. 3.3 released by JGI data releasing policy No Yes thiele_biology@gmx.de Stefan Thiele No Environmental Terrestrial Unclassified Soil Permafrost Permafrost soil 78.18301 15.91776 1.35 146025353 434599 73 1 168 1 0.0 Metagenome 3300050506 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Bulk soil microbial communities from a Populus tree surrounding site in Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5 re-annotation DOE Joint Genome Institute (JGI) 3300050506 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Environmental Terrestrial Tree plantation Soil Unclassified Bulk soil 35.8444 -83.9599 2471955443 5699905 1338 40 2494 67 SRX2843300 0.0 Metagenome 3300032185 *Microbiome Permanent Draft STAs constructed wetland biome Wetland sediment microbial communities from Everglades, Florida, USA - STA55-Sample05_1 University of Florida 3300032185 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy No Yes ng.hanh24@gmail.com Hanh Nguyen No Environmental Aquatic Wetlands Freshwater Sediment sediment 26.38 -80.51 6.6-8.4 50190709 66891 34 0 48 0 0.0 Metagenome 3300048044 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BG2-12_D0 (version 2) DOE Joint Genome Institute (JGI) 3300048044 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3634 19.0475 637492220 1109256 273 29 409 34 Restricted 0.0 Metagenome 3300037529 *Microbiome Permanent Draft Soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA Soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA - S2.2017.0 DOE Joint Genome Institute (JGI) 3300037529 Metagenome Analysis metaspades v. 3.13.0 Yes Yes adina@iastate.edu Adina Howe No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.0127 -93.7445 1643698057 2832335 506 8 910 8 SRX9161650 Unrestricted 14.42 Metagenome 7000000542 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 158742018 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000542 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 53108 108 0 0 0 0 SRX023634, SRX023633 0.0 Metagenome 3300014291 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_137 The George Washington University (GWU) 3300014291 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 47421140 83172 46 4 90 6 SRX656283 0.0 Metagenome 3300013702 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01125 Weill Cornell Medical College 3300013702 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.91 18784939 27982 16 0 19 0 SRX823080 0.0 Metagenome 3300027755 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic Ocean affecting the dissolved organic carbon pool Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - 250m_A/KNORR_S2/LV (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027755 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -37.9983 -44.9998 619252405 1455894 699 42 1211 71 SRX2566716 Unrestricted 0.0 Metagenome 3300044713 *Microbiome Permanent Draft Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA - PH 28 years plot 1 DOE Joint Genome Institute (JGI) 3300044713 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes luizdomeignoz@gmail.com Luiz Domeignoz Horta No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 42.303 -72.1228 1665864985 2698996 302 45 474 73 SRX15792986 Unrestricted 13.27 Metagenome 3300065593 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 791 in Vulcan, Alberta, Canada - S00JY_0526 Microbiome Insights 3300065593 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 50.2910242 -113.1540896 254781895 367491 81 0 124 0 0.0 Metagenome 3300071142 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone National Park, Wyoming, USA - YELL_001-M-20180710-COMP-DNA1 3300071142 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 42899072 127777 131 5 279 10 0.0 Metagenome 3300040004 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Taiga, AK, USA - HEAL_001-O-20160804-COMP-DNA1 Battelle Memorial Institute 3300040004 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.87569 -149.21334 17344727 47964 41 3 77 5 0.0 Metagenome 3300002054 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - A-A3 J. Craig Venter Institute (JCVI) 3300002054 Metagenome Analysis Released per Alexandra J. Roth Schulze (April 1, 2016) No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 102504616 289748 33 14 93 21 0.0 Metagenome 3300011253 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeate Toyama Prefectural University 3300011253 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Unclassified marine 37.04027 137.37583 8.2 123670716 278562 38 8 43 17 0.0 Metagenome 3300029528 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI021994-25 Beijing Genomics Institute (BGI) 3300029528 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 69570196 110864 90 0 134 1 0.0 Metagenome 3300025090 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Jinze hot spring, China to study Microbial Dark Matter (Phase II) - JNZ 110809A (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025090 Metagenome Analysis spades v. 3.11.1 Yes Yes brian.hedlund@unlv.edu; rstepanauskas@bigelow.org Brian Hedlund; Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring 25.4413 98.46 6.71 159721048 243959 143 1 204 0 SRX2753918 Unrestricted 0.0 Metagenome 3300022772 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA12 Version 2 University of New South Wales 3300022772 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au; z5119396@unsw.edu.au Holly Bennett; Viet Hung Nguyen No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 51942946 73622 37 2 56 2 0.0 Metagenome 3300035073 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 16_7.5_C_13_1 DOE Joint Genome Institute (JGI) 3300035073 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1863 -2.2145 841139777 2054497 230 1 350 1 SRX8234224 Unrestricted 9.12 Metagenome 3300024335 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 90D DOE Joint Genome Institute (JGI) 3300024335 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 373199300 700412 237 31 337 64 SRX4474295 Unrestricted 19.4 Metagenome 3300025774 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-4B (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025774 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.299 -156.61 63850416 178678 94 3 182 7 SRX2910105 Unrestricted 0.0 Metagenome 3300050225 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Warrenville, Illinois, USA - 67_701_IL_DR_1m_c1_T1_18O DOE Joint Genome Institute (JGI) 3300050225 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 41.84145 -88.2298 769643011 1304682 304 6 466 8 Restricted 11.64 Metagenome 3300026032 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026032 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.052479 -121.7687 86882294 210725 150 1 316 1 SRX7181186 Unrestricted 0.0 Metagenome 3300022218 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_13 DOE Joint Genome Institute (JGI) 3300022218 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Sediment Marine Unclassified sediment 38.03 -122.37 868804516 2047083 777 66 1361 85 SRX4053702 Unrestricted 7.65 Metagenome 3300059736 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1555C-02 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059736 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2024 -123.9409 173392289 371459 151 16 246 22 SRX2753739 Unrestricted 0.0 Metagenome 3300040180 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 044_R1_022417 University of Maryland 3300040180 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 61.06278611 25.54026111 8252371 18542 13 3 23 1 0.0 Metagenome 3300007075 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge Cinachyra sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - cg23is University of New South Wales 3300007075 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au, e.botte@aims.gov.au; n.webster@aims.gov.au Nicole Webster, Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Cinachyra sp. (marine sponge) -9.8241 150.825833 25379564 34825 14 2 22 1 0.0 Metagenome 3300048042 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BG2-03_D100 (version 2) DOE Joint Genome Institute (JGI) 3300048042 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3634 19.0475 185199675 296266 99 12 140 12 Restricted 0.0 Metagenome 3300046728 *Microbiome Permanent Draft Soil microbial communities from Blodgett Forest Research Station, California, USA Soil microbial communities from Blodgett Forest Research Station, California, USA - BWE201506021H5060 DOE Joint Genome Institute (JGI) 3300046728 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.912 -120.6615 239193644 398214 146 46 256 57 Unrestricted 12.86 Metagenome 3300042664 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A31 University of California, Davis 3300042664 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 203423254 593404 283 6 508 14 0.0 Metagenome 3300035185 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D1103M02 DOE Joint Genome Institute (JGI) 3300035185 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0386 1222545504 2710357 788 4 1422 2 SRX8255465 Unrestricted 6.25 Metagenome 3300044981 *Microbiome Permanent Draft Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA - SWaN 13 years plot 2 DOE Joint Genome Institute (JGI) 3300044981 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes luizdomeignoz@gmail.com Luiz Domeignoz Horta No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 42.303 -72.1228 1786802333 2928714 391 34 639 56 SRX15792998 Unrestricted 14.41 Metagenome 3300044498 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_266 DOE Joint Genome Institute (JGI) 3300044498 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 458876935 1182052 495 25 800 33 Unrestricted 6.97 Metagenome 7000000544 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 158742018 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000544 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 5328293 5509 0 0 0 0 0.0 Metagenome 2170459013 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm 454 Life Sciences 2170459013 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.804241 -0.372114 341288268 930403 288 22 463 47 0.0 Metagenome 3300043606 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 105-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043606 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9868 -107.0053 429399960 1112052 371 29 724 41 Unrestricted 8.35 Metagenome 3300013704 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00439 Weill Cornell Medical College 3300013704 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.88 15333006 29072 11 0 12 0 SRX822408 0.0 Metagenome 3300012085 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ031 MetaG DOE Joint Genome Institute (JGI) 3300012085 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.7125 -74.5645 229368557 466666 204 18 308 37 SRX3539465 Unrestricted 0.0 Metagenome 3300060658 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Santa Rita Experimental Range, Tucson, Arizona, USA - SRER_004-M-20210809-comp-1 DOE Joint Genome Institute (JGI) 3300060658 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Desert Soil Unclassified Terrestrial soil 31.906778 -110.815262 507633143 896281 336 9 648 12 Unrestricted 21.62 Metagenome 3300055473 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.2W.11 SIP fraction DOE Joint Genome Institute (JGI) 3300055473 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 275518823 465275 270 51 381 77 Unrestricted 18.96 Metagenome 3300055294 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Biomass microbial communities from acid-phase anaerobic digester in WWTP, Madison, WI, USA - 20211006_SampleA DOE Joint Genome Institute (JGI) 3300055294 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Sludge Anaerobic digester Unclassified Biomass 43.03331 -89.35633 2987291203 4587891 1518 41 2120 73 Unrestricted 25.33 Metagenome 3300000421 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active Layer A2 v4 (version 4) DOE Joint Genome Institute (JGI) 3300000421 Metagenome Analysis Velvet released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300042960 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-402 Genome Quebec 3300042960 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 53.256011 -112.912167 1074487429 2431635 409 19 662 34 0.0 Metagenome 3300018917 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - early-mid stage, 0 min after wetting v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018917 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 364021660 732148 400 10 633 14 0.0 Metagenome 3300027916 *Microbiome Permanent Draft Deep subsurface rock core microbial communities from Deccan traps, Ukhalu, Maharashtra, India Deep subsurface rock core microbial communities from Deccan traps, Ukhalu, Maharashtra, India - U7_55 trimmed_55_20 Marine Biological Laboratory 3300027916 Metagenome Analysis Spades v. 3.11.1 released by JGI data releasing policy No Yes avishekdutta14@gmail.com; psar@hijli.iitkgp.ernet.in Avishek Dutta; Pinaki Sar No Environmental Terrestrial Rock Deep subsurface Unclassified Deep subsurface rock core 17.125867 73.869133 998908512 2468798 286 35 643 99 0.0 Metagenome 3300027347 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus makropetalos BAHAMAS.2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027347 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 459674176 515576 10 3 15 2 SRX3299581 Unrestricted 0.0 Metagenome 3300070707 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_042-M-20180717-COMP-DNA1 3300070707 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 8936075 28888 35 2 68 2 0.0 Metagenome 3300039355 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 549_12M Beijing Genomics Institute (BGI) 3300039355 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 67686602 79917 44 0 79 0 ERX491199 0.0 Metagenome 3300004195 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 62_LOW9 DOE Joint Genome Institute (JGI) 3300004195 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 92956280 231278 47 0 81 0 SRX2720760 Unrestricted 0.0 Metagenome 3300060917 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Lower Teakettle, Sierra National Forest, California, USA - TEAK_004-M-20210726-comp-1 DOE Joint Genome Institute (JGI) 3300060917 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 37.001687 -119.036304 1378022830 2437299 496 92 920 127 Unrestricted 17.31 Metagenome 3300042040 *Microbiome Permanent Draft Mollusc gills microbial communities from various hydrothermal vent in Atlantic Ocean Mollusc gills microbial communities from Lilliput hydrothermal vent, Atlantic Ocean - BspSym_Li_5_5-4 Max Planck Institute for Marine Microbiology 3300042040 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills -9.5481672 -13.2088327 149338563 172839 2 2 4 3 ERX3367176 0.0 Metagenome 3300003635 *Microbiome Permanent Draft Hypersaline viral and bacterial communities from Bras del Port, Santa Pola, Spain Hypersaline viral communities from Bras del Port, Santa Pola, Spain - Lo Valdivia P5 Lifesequencing S.L. 3300003635 Metagenome Analysis released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline samples 38.192206 -0.591865 22070040 41803 0 0 0 0 0.0 Metagenome 3300069349 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_001-O-20140516-COMP-DNA1 re-annotation Argonne National Laboratory 3300069349 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 14697222 44383 40 6 98 9 ERX2134024 0.0 Metagenome 3300056871 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Activated sludge microbial communities from bioreactor in WWTP, Madison, WI, USA - RS_2021-10-05_SampleC (version 2) DOE Joint Genome Institute (JGI) 3300056871 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.03331 -89.35633 121966806 150653 55 28 74 24 Unrestricted 0.0 Metagenome 3300032738 *Microbiome Permanent Draft Meromitic Lake A Freshwater microbial communities from meromitic lake A, Ellesmere Island, Canada - Sample 65m Laval University 3300032738 Metagenome Analysis Megahit v. 1.0.5 released by JGI data releasing policy Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 82.99445 -75.443367 1294461878 2800395 519 1 1070 4 0.0 Metagenome 3300028770 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N2_4 DOE Joint Genome Institute (JGI) 3300028770 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 424075497 1105767 249 16 482 24 SRX5356660 Unrestricted 0.0 Metagenome 3300061130 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIF3SW no PMA treatment Jet Propulsion Laboratory, California Institute of Technology 3300061130 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 61421978 84431 33 8 48 18 SRX2249361, SRX3808519, SRX2249358, SRX3808502 0.0 Metagenome 2030936001 *Microbiome Permanent Draft Termite hindgut microbial communities from Amitermes wheeleri in the Arizona desert and from Nasutitermes corniger in Florida, USA Nasutitermes corniger hindgut microbial communities from Florida, USA DOE Joint Genome Institute (JGI) 2030936001 Metagenome Analysis Newbler No Yes phugenholtz@lbl.gov Phil Hugenholtz Yes 23593407 Host-associated Arthropoda: Insects Hindgut Digestive system Paunch/P3 segment Termite hindgut 26.135 -80.129 70019037 151164 0 0 0 0 0.0 Metagenome 3300024908 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 111_LOW13 (SPAdes) DOE Joint Genome Institute (JGI) 3300024908 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 40396330 57784 22 0 34 0 SRX2721182 Unrestricted 0.0 Metagenome 3300038793 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - WEM-2_at_2-3_cm Genome Quebec 3300038793 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89896 -73.80984 426498296 1109715 611 35 1243 54 0.0 Metagenome 3300050673 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_9A1_100318_1536 DOE Joint Genome Institute (JGI) 3300050673 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 798784962 1325081 320 149 507 211 Unrestricted 23.31 Metagenome 3300012173 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT517_2 DOE Joint Genome Institute (JGI) 3300012173 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8895 -106.9084 236349496 530576 240 22 481 40 SRX3368483 Unrestricted 0.0 Metagenome 3300024228 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 41D DOE Joint Genome Institute (JGI) 3300024228 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 296065218 632864 205 28 297 48 SRX4464845 Unrestricted 18.23 Metagenome 3300005621 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP10 Narrow Gauge v2 (version 2) DOE Joint Genome Institute (JGI) 3300005621 Metagenome Analysis LUCY, PGA released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23755042 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.9694208 -110.7098244 6.5 3225967 5627 14 0 109 0 Unrestricted 0.0 Metagenome 3300046329 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_98 DOE Joint Genome Institute (JGI) 3300046329 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9802 -106.9905 347736156 921877 1002 195 1949 272 Restricted 0.0 Metagenome 3300015352 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_01AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015352 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 403652196 634163 25 445 35 663 SRX3923697 Unrestricted 8.56 Metagenome 3300011851 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01048 Weill Cornell Medical College 3300011851 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.67 -73.92 56848413 68473 21 0 30 0 SRX823010 0.0 Metagenome 3300048787 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 E2 1-5 DOE Joint Genome Institute (JGI) 3300048787 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.0467 186717943 326161 178 3 304 3 Restricted 17.46 Metagenome 3300030314 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from healthy individual in Ann Arbor, USA - MG100164 University of Michigan 3300030314 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 42.28 -83.74 7994834 14512 29 0 47 0 0.0 Metagenome 3300028597 *Microbiome Permanent Draft Soil microbial communities from agricultural site in Penn Yan, New York, United States Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14 DOE Joint Genome Institute (JGI) 3300028597 Metagenome Analysis spades v. 3.11.1 Yes Yes dbuckley@cornell.edu Dan Buckley No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.673 -77.032 3126869236 8120448 1440 101 2517 185 SRX5246689 Unrestricted 20.67 Metagenome 3300012354 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG DOE Joint Genome Institute (JGI) 3300012354 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.5673 -123.4758 1969916947 3851662 1352 66 2543 98 SRX3372694 Unrestricted 0.0 Metagenome 3300027684 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027684 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 448884953 1137732 283 72 534 123 SRX3312019 Unrestricted 0.0 Metagenome 3300056625 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Activated sludge microbial communities from bioreactor in WWTP, Madison, WI, USA - RS_2021-01-20_SampleB DOE Joint Genome Institute (JGI) 3300056625 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.03331 -89.35633 1156617017 1154099 356 37 368 37 Unrestricted 12.27 Metagenome 3300005875 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_101 DOE Joint Genome Institute (JGI) 3300005875 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 260131707 892245 360 6 747 12 SRX2564886, SRX2581059 Unrestricted 0.0 Metagenome 3300025399 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29Oct07 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025399 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 141003280 272085 54 36 93 47 SRX2565364 Unrestricted 0.0 Metagenome 3300042748 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_12-Aug-14 NMDC pilot DOE Joint Genome Institute (JGI) 3300042748 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 54171370 140150 190 60 332 114 SRX2838887 0.0 Metagenome 3300055278 *Microbiome Permanent Draft Soil microbial communities from various environments and locations in the USA Soil microbial communities from forest in Falmouth, Massachusetts, USA - OKPF_TOP DOE Joint Genome Institute (JGI) 3300055278 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nancy.hess@pnnl.gov Nancy Hess No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 41.5519 -70.6354 2456313419 3867602 460 72 728 100 Unrestricted 16.98 Metagenome 3300039084 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-1_at_3-4_cm Genome Quebec 3300039084 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89934 -73.72822 624743434 1640078 688 13 1528 27 0.0 Metagenome 3300025501 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_17_150 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025501 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 291384260 531135 151 5 236 8 SRX3006033 Unrestricted 0.0 Metagenome 3300057120 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2015-0032 DOE Joint Genome Institute (JGI) 3300057120 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.7172 -83.016 544805776 998186 326 120 505 165 Unrestricted 24.52 Metagenome 3300029783 *Microbiome Permanent Draft Human fecal microbial communities from healthy and liver cirrhosis patients in Hangzhou, China Human fecal microbial communities from healthy subjects in Hangzhou, China - HD-60_Run5 Zhejiang University 3300029783 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 30.0 120.0 213799295 307117 204 0 323 0 0.0 Metagenome 3300049593 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 DOE Joint Genome Institute (JGI) 3300049593 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.407926 -82.180036 1200141040 2009289 476 9 855 14 Unrestricted 13.87 Metagenome 3300032030 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300032030 Metagenome Analysis spades v. 3.12.0 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -40.3794 175.6106 3426869387 6550227 4193 43 6441 55 SRX5785080, SRX5785079 Unrestricted 0.0 Metagenome 3300037873 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_070717_48_v DOE Joint Genome Institute (JGI) 3300037873 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2006314743 3159340 654 3 1010 4 SRX9162439 Unrestricted 14.78 Metagenome 3300003440 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Hydrocarbon microbial community from Medicine Hat (2PWMHGC) 3300003440 Metagenome Analysis released by JGI data releasing policy No Yes nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Unclassified Unclassified Subsurface hydrocarbon 56.22 -117.33 18425208 32069 24 0 40 0 0.0 Metagenome 3300047285 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Sacramento River, California, USA - NASQAN2015_206 DOE Joint Genome Institute (JGI) 3300047285 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.456 -121.5013 207902146 468983 119 12 205 22 Unrestricted 30.98 Metagenome 3300024423 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4869-18-3-4_MG DOE Joint Genome Institute (JGI) 3300024423 Metagenome Analysis spades v. 3.11.1 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.0074 -110.591 431675414 1007877 389 2 694 5 SRX4387640, SRX4387639 Unrestricted 0.0 Metagenome 3300045171 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_7_F DOE Joint Genome Institute (JGI) 3300045171 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 224964008 257211 122 1 143 2 Unrestricted 138.22 Metagenome 3300014551 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS53_0 University of Hohenheim 3300014551 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 100097617 159333 72 0 135 0 0.0 Metagenome 3300036770 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from deep shales in Oklahoma, United States - MC-1-C DOE Joint Genome Institute (JGI) 3300036770 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back fracking water 35.784 -98.26 4590852221 9701482 1589 480 2399 807 SRX8135499 Unrestricted 23.99 Metagenome 3300024302 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_200_MG DOE Joint Genome Institute (JGI) 3300024302 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca; shallam@interchange.ubc.ca Sean Crowe; Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5847 -123.5008 636615894 1250674 397 19 580 29 SRX4496795 Unrestricted 37.6 Metagenome 3300034975 *Microbiome Finished Coastal sediment microbial communities from Western Antarctica Coastal sediment microbial communities from Western Antarctica - 9_event68 Megahit 68 Michigan State University 3300034975 Metagenome Analysis Megahit v. 1.1 released by Deric Learman No Yes deric.learman@cmich.edu Deric Learman No Environmental Aquatic Coastal Marine Sediment marine sediment -75.1981 -176.5927 159721995 327814 122 47 279 90 0.0 Metagenome 3300002717 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A2-12 DOE Joint Genome Institute (JGI) 3300002717 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 863080 2851 26 3 48 5 SRX1991228 Unrestricted 0.0 Metagenome 3300013449 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100578 University of Pennsylvania 3300013449 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 139510 416 6 0 3 0 SRX756176 0.0 Metagenome 3300039100 *Microbiome Permanent Draft Freshwater microbial communities from Klamath Basin, USA Freshwater microbial communities from Copco Reservoir, Klamath Basin, California, USA - CR160 Oregon State University 3300039100 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.97 -122.3 47986615 83507 47 6 84 11 0.0 Metagenome 3300026793 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A3a-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026793 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 26805596 85722 93 2 176 6 SRX1991224 Unrestricted 0.0 Metagenome 2119805004 *Microbiome Permanent Draft Hot spring nanoarchaeal communities from Obsidian Pool, Yellowstone National Park Obsidian Pool HudsonAlpha Institute for Biotechnology, Oak Ridge National Laboratory 2119805004 Metagenome Analysis released per JGI data release policy No Yes podarm@ornl.gov Mircea Podar No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6 -110.433 6329305 16136 7 1 14 0 0.0 Metagenome 3300048769 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 E3 20-24 DOE Joint Genome Institute (JGI) 3300048769 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3532 19.0469 563889038 853884 232 9 347 8 Restricted 13.71 Metagenome 3300026005 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_101 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026005 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 55969738 156516 107 2 203 1 SRX2564886, SRX2581059 Unrestricted 0.0 Metagenome 3300007852 *Microbiome Permanent Draft Non-marine hypersaline water microbial communities of A?ana Salar, Pais Vasco, Spain Non-marine hypersaline water microbial communities of A?ana Salar, Pais Vasco, Spain - Cell Surgencia A?ana 2014 University of Alicante 3300007852 Metagenome Analysis IDBA 1.1.1 PRE correction released per JGI data release policy No Yes ramosloles@gmail.com Mar?a Dolores Ramos Barbero, Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline water 42.80111387 -2.985507 78816411 153923 174 3 251 1 0.0 Metagenome 3300027890 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027890 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 29146959 Environmental Aquatic Wetlands Freshwater Sediment Wetland 41.224 -82.304 1619101224 4180332 1347 34 2700 73 SRX2761412 Unrestricted 0.0 Metagenome 3300013571 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - seawater enrichment SCG60 University of British Columbia 3300013571 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 2435729 4977 3 0 6 0 SRX143169 0.0 Metagenome 3300042349 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME09Jul2018-rr0792 DOE Joint Genome Institute (JGI) 3300042349 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 594904681 943889 310 69 385 105 Unrestricted 15.07 Metagenome 3300003602 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA DOE Joint Genome Institute (JGI) 3300003602 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 275529333 566278 325 5 486 12 Unrestricted 0.0 Metagenome 3300020177 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041402US metaG (spades assembly) DOE Joint Genome Institute (JGI) 3300020177 Metagenome Analysis spades v. 3.10.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 901065319 1676595 455 45 670 56 SRX3920141 Unrestricted 29.11 Metagenome 3300045588 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Iowa River, Iowa, USA - NASQAN2011_458 DOE Joint Genome Institute (JGI) 3300045588 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 41.178 -91.182 344975049 783214 250 63 372 96 Unrestricted 0.0 Metagenome 3300019460 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Enriched compost microbial communities from Sao Paulo Zoo, Sao Paulo, Brazil - thermophilic consortium ZCTH04_C15 Center for Advanced Technologies in Genomics, Sao Paulo University 3300019460 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Engineered Solid waste Composting Zoo waste Unclassified compost -23.651072 -46.620675 14759338 18821 31 0 21 0 0.0 Metagenome 3300025798 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWA_D1 (SPAdes) DOE Joint Genome Institute (JGI) 3300025798 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 37.926434 -122.509186 230742206 463745 226 2 400 4 SRX7142926 Unrestricted 0.0 Metagenome 3300026159 *Microbiome Permanent Draft Anaerobic reactors microbiome study Activated sludge microbial communities from lab. scaled anaerobic digester in Belvaux, Luxembourg - ACS0-55 University of Luxembourg 3300026159 Metagenome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 49.506216 5.943617 421125948 499846 126 2 237 4 0.0 Metagenome 3300008966 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-53-LTR University of Michigan 3300008966 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.8271 -83.1945 8.578 657334506 696559 112 119 117 189 0.0 Metagenome 3300022413 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_21 DOE Joint Genome Institute (JGI) 3300022413 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Sediment Marine Unclassified sediment 37.79 -122.36 1905245681 4059192 928 26 1649 52 SRX4054385 Unrestricted 8.42 Metagenome 3300030521 *Microbiome Permanent Draft Soil and ectomycorrhiza microbial communities from Populus trichocarpa stands in riparian zones in the Pacific Northwest, United States Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM DOE Joint Genome Institute (JGI) 3300030521 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Plants Unclassified Roots Unclassified ectomycorrhiza 45.5468 -122.376 1081039811 1655862 222 88 353 141 SRX5650618 Unrestricted 15.15 Metagenome 3300011737 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00292 Weill Cornell Medical College 3300011737 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.7 -74.01 34183152 53458 18 0 15 0 SRX822265 0.0 Metagenome 3300002385 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 05AUG2010 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002385 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 21427591 55148 63 7 98 16 SRX1988995 Unrestricted 0.0 Metagenome 7000000047 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular creasemicrobial communities from NIH, USA - visit 1, subject 404239096 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000047 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 9115858 17357 0 0 0 0 SRX024056 0.0 Metagenome 3300013188 *Microbiome Permanent Draft Marine hypoxic microbial communities from the Gulf of Mexico, USA Marine hypoxic microbial communities from the Gulf of Mexico, USA - 6m_Station1_GOM_Metagenome Georgia Institute of Technology 3300013188 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 276475795 661707 179 21 267 35 SRX958229 0.0 Metagenome 3300009469 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 6m depth; DNA IDBA-UD Marine Biological Laboratory 3300009469 Metagenome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes jhuber@mbl.edu, jhuber@mbl.edu; jhuber@whoi.edu Huber, Huber; Julie Huber No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 6.5 309053363 634055 281 61 404 89 0.0 Metagenome 3300011458 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01039 Weill Cornell Medical College 3300011458 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.67 -73.88 13751697 22634 15 0 21 0 SRX823001 0.0 Metagenome 3300041000 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Marine microbial communities from Western Tropical North Atlantic Ocean - ACM6 University of Georgia 3300041000 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 12.41 -52.22 28448184 78295 69 2 131 1 0.0 Metagenome 3300043530 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield ecozone, Canada - Lake 06-265 Genome Quebec 3300043530 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.971455 -54.629785 533348990 1140619 220 31 357 55 0.0 Metagenome 7000000655 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 160643649 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000655 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 90731135 152219 0 0 0 0 0.0 Metagenome 3300055552 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.16C.9 SIP fraction DOE Joint Genome Institute (JGI) 3300055552 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 193088155 389400 167 16 288 37 Unrestricted 10.29 Metagenome 3300005666 *Microbiome Permanent Draft contaminated soil bacterial community with fluoranthene from Beijing, China contaminated soil bacterial community with fluoranthene from Beijing, China Chinese National Human Genome Center at Shanghai 3300005666 Metagenome Analysis newblerV2.3 released per JGI data release policy No Yes 467101651@qq.com jiankang zhao No Environmental Terrestrial Unclassified Soil Unclassified contaminated soil 39.852013 116.535297 71996700 157603 19 0 10 0 0.0 Metagenome 3300005139 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Hot Lake Consortium UCC-SL28 (Hybrid Assembly) DOE Joint Genome Institute (JGI) 3300005139 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hypersaline mat 48.972613 -119.477608 111012030 154849 136 1 231 0 SRX2575235, SRX2575236, SRX2575233, SRX2575234, SRX2575237, SRX2575232 Unrestricted 0.0 Metagenome 3300046020 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_2_D DOE Joint Genome Institute (JGI) 3300046020 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 140497346 160012 92 1 106 1 Restricted 126.14 Metagenome 3300009487 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS854 no min length Marine Biological Laboratory 3300009487 Metagenome Analysis Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow marine hydrothermal vent 296153474 988681 201 8 490 19 0.0 Metagenome 3300044293 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_20m_2014 DOE Joint Genome Institute (JGI) 3300044293 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 399185453 674569 192 26 343 46 Unrestricted 41.46 Metagenome 3300027980 *Microbiome Permanent Draft Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd47.1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027980 Metagenome Analysis spades v. 3.11.1 Yes Yes jeremy.rich@maine.edu Jeremy Rich No Environmental Aquatic Coastal Marine Sediment Marine sediment 1048880070 1904385 644 39 1054 53 SRX2837950 Unrestricted 0.0 Metagenome 3300044474 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - MERD-8-26-19 DOE Joint Genome Institute (JGI) 3300044474 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.2413 -120.3775 586609124 1449199 618 71 1029 129 Restricted 9.03 Metagenome 3300014711 *Microbiome Permanent Draft Surface and well water microbial communities from Bara Haldia, Bangladesh Surface water microbial communities from Bangladesh - BaraHaldiaSW0111 University of Tennessee 3300014711 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Groundwater Freshwater Unclassified Surface water 40160866 111307 25 7 48 13 0.0 Metagenome 2236876002 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Marine microbial communities from Columbia River, CM, sample from CR-7km from mouth, GS312-0p8-CR7-chlmax University of South Carolina 2236876002 Metagenome Analysis No Yes mariyasmit@hotmail.com Mariya Smit, Mariya W. Smit No Environmental Aquatic Intertidal zone Marine Estuary Marine estuarine 46.167 -124.158 79207354 227280 205 32 355 59 0.0 Metagenome 3300002557 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm DOE Joint Genome Institute (JGI) 3300002557 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.718176 -123.652732 233865259 622655 79 37 344 41 SRX1991087 Unrestricted 0.0 Metagenome 3300040507 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Environmental Research Center, Mid-Atlantic, MD, USA - SERC_001-M-20170710-COMP-DNA1 Battelle Memorial Institute 3300040507 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89008 -76.56001 3198412 9914 12 4 32 10 0.0 Metagenome 3300043454 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-418 Genome Quebec 3300043454 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 52.671646 -105.272484 1027113624 2300227 406 109 709 181 0.0 Metagenome 3300043829 *Microbiome Permanent Draft Simulated microbial communities of Trichodesmium and heterotrophic bacteria from Gulf of Aqaba, Eilat, Israel Simulated microbial communities of Trichodesmium and heterotrophic bacteria from Gulf of Aqaba, Eilat, Israel - T0-3 DOE Joint Genome Institute (JGI) 3300043829 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes yeala.shaked@mail.huji.ac.il Yeala Shaked No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified simulated 29.501 34.917 24328599 34241 11 0 24 0 Unrestricted 7929.39 Metagenome 3300044787 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_11 DOE Joint Genome Institute (JGI) 3300044787 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 445646326 1105326 399 12 710 32 Unrestricted 7.11 Metagenome 3300069433 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Mid-Atlantic, VA, USA - SCBI_049-M-20170719-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069433 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89292 -78.1395 9752973 31395 48 4 67 4 0.0 Metagenome 3300031208 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #47 DOE Joint Genome Institute (JGI) 3300031208 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.457 78.1911 263385642 450339 128 28 154 51 SRX5649285 Unrestricted 55.72 Metagenome 3300009774 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - lysozymeSSSS metaG DOE Joint Genome Institute (JGI) 3300009774 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca Ramunas Stepanauskas; Peter Dunfield No Environmental Aquatic Ice Freshwater Glacier Glacier valley 81.017 -81.583 907025361 1723962 908 16 1373 44 SRX3006941 Unrestricted 0.0 Metagenome 3300013694 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01100 Weill Cornell Medical College 3300013694 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.64 -73.94 15661349 25995 7 0 14 0 SRX823055 0.0 Metagenome 3300006104 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09.1 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006104 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 708057675 1734512 515 32 824 67 SRX2566717 Unrestricted 0.0 Metagenome 3300020203 *Microbiome Permanent Draft Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica- Oligotrophic Lake LV.19.MP7.P2 DOE Joint Genome Institute (JGI) 3300020203 Metagenome Analysis spades v. 3.10.1 Yes Yes dysumner@ucdavis.edu Dawn Sumner No Environmental Aquatic Lake Freshwater Microbial mats freshwater microbial mat -77.5281 161.59 1193435537 2112271 664 71 1018 96 SRX3539173 Unrestricted 22.03 Metagenome 3300005528 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom. Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG DOE Joint Genome Institute (JGI) 3300005528 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov, rmmckay@bgsu.edu Susannah Tringe, Robert M. McKay No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.69957 -83.2941 1737034808 4490767 1189 301 1729 612 SRX2832453 Unrestricted 0.0 Metagenome 3300029052 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 536_M Beijing Genomics Institute (BGI) 3300029052 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 142904217 202368 112 0 193 0 ERX491188 0.0 Metagenome 3300020344 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001964 (ERX556104-ERR598987) CEA Genoscope 3300020344 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 14.2016 -116.696 325557960 733533 285 3 500 4 0.0 Metagenome 3300056756 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.4C.6 SIP fraction DOE Joint Genome Institute (JGI) 3300056756 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 210802983 404390 99 2 169 0 Unrestricted 13.1 Metagenome 3300003141 *Microbiome Permanent Draft Marine sediment microbial communities from deep subseafloor Marine sediment microbial communities from deep subseafloor of Shimokita Peninsula, Japan - 107 mbsf Japan Agency for Marine-Earth Science and Technology 3300003141 Metagenome Analysis Made public because these are downloaded from Genbank No Yes takamih@jamstec.go.jp Hideto Takami Yes 24624126 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Marine sediment 41.1773 142.2013 34967503 70573 22 0 17 0 0.0 Metagenome 3300042325 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME02Feb2013s1D0-rr0726 DOE Joint Genome Institute (JGI) 3300042325 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 821053249 1296550 189 75 223 91 Unrestricted 16.5 Metagenome 3300031928 *Microbiome Permanent Draft Microbial communities from the deep biosphere Freshwater microbial communities in the subglacial waters of the Vatnajokull ice cap, Iceland - B1_4 re-assembly Marine Biological Laboratory 3300031928 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet Yes 22975882 Environmental Aquatic Subglacial lake Freshwater Unclassified Freshwater 64.48702 -17.50583 66022715 125447 53 3 104 5 0.0 Metagenome 3300009090 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG DOE Joint Genome Institute (JGI) 3300009090 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 2517516031 4898104 1244 33 2025 61 SRX2933125 Unrestricted 0.0 Metagenome 3300041698 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_138 MetaG AgResearch, New Zealand, Mosgeil 3300041698 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 2331994609 4858288 277 24 1383 52 0.0 Metagenome 3300003214 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL DOE Joint Genome Institute (JGI) 3300003214 Metagenome Analysis Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.9082 -79.0499 183666840 313865 97 0 177 0 SRX2562214 Unrestricted 0.0 Metagenome 3300040670 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_004-M-20140325-COMP-DNA1 Argonne National Laboratory 3300040670 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 1345728 4136 23 8 51 10 ERX2134049 0.0 Metagenome 3300036908 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 S3 20-24 DOE Joint Genome Institute (JGI) 3300036908 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0475 567000754 891813 200 5 290 13 SRX8138802 Unrestricted 18.48 Metagenome 3300028423 *Microbiome Permanent Draft Bras del Port September 2017 Non-marine hypersaline water viralcommunities from Bras del Port saltern ponds, Alicante, Spain - BRAS_September 2016 University of Alicante 3300028423 Metagenome Analysis IDBA v. 1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Mar?a Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline water 38.1904 -0.5948 122703350 308626 55 0 85 0 0.0 Metagenome 2124908021 *Microbiome Draft Switchgrass rhizosphere microbial communities from Michigan, USA Bulk soil microbial communities from switchgrass field near Rose Lake, East Lansing, Michigan, USA - RL3 Bulk Soil v1 DOE Joint Genome Institute (JGI) 2124908021 Metagenome Analysis Newbler and/or Velvet released based on JGI ITS No Yes tiedjej@msu.edu James Tiedje No Environmental Terrestrial Agricultural land Soil Bulk soil Bulk soil 42.794771 -84.393804 20487337 41246 40 1 48 0 Unrestricted 0.0 Metagenome 3300035675 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D3_B DOE Joint Genome Institute (JGI) 3300035675 Metagenome Analysis spades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified soil 41.3776 -82.5117 11839946052 28990495 5216 69 10087 118 SRX8175037 Unrestricted 6.97 Metagenome 3300001124 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 DOE Joint Genome Institute (JGI) 3300001124 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 35909008 104536 135 45 214 94 SRX3312706 Unrestricted 0.0 Metagenome 3300011247 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_3, 0.02 Toyama Prefectural University 3300011247 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Unclassified marine 37.1316 137.71844 55910521 152576 31 0 48 2 0.0 Metagenome 3300059777 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1370B-02 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059777 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.234 -123.9135 129924375 279626 161 25 301 36 SRX2753609 Unrestricted 0.0 Metagenome 3300003889 *Microbiome Permanent Draft Freshwater pond sediment microbial communities from Middleton WI, enriched by Humin and/or Glucose under anaerobic conditions Freshwater pond sediment microbial communities from Middleton WI, enriched with Humin and Glucose under anaerobic conditions - HM Sample 1 University of Wisconsin 3300003889 Metagenome Analysis CLC Genomic Workbench released per JGI data release policy Yes Yes jmejia@wisc.edu Jacqueline Mejia No Environmental Aquatic Sediment Freshwater Unclassified Anaerobic Enrichment Culture 43.0603 -89.5717 208208476 380289 165 2 267 2 0.0 Metagenome 3300019933 *Microbiome Permanent Draft Arctic soil viral communities from Stordalen Mire, Sweden Arctic soil viral communities from Stordalen Mire, Sweden - P-A2 DOE Joint Genome Institute (JGI) 3300019933 Metagenome Analysis spades v. SPAdes version: 3.10.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Terrestrial Palsa Soil Mineral soil core arctic soil 68.3526 19.0147 4505121 12838 4 6 10 10 SRX5627536 Restricted 0.0 Metagenome 3300014134 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_108 The George Washington University (GWU) 3300014134 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 32317392 69794 38 7 68 12 SRX656280 0.0 Metagenome 3300006080 *Microbiome Permanent Draft Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea - fluid E Max Planck Institute for Plant Breeding Research 3300006080 Metagenome Analysis idba_ud v 1.1.1 released per JGI data release policy Yes Yes dmeier@mpi-bremen.de, dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Hydrothermal vents Marine Diffuse flow diffuse hydrothermal fluid -3.720639 151.675313 504328220 863594 184 27 238 45 0.0 Metagenome 3300049427 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River, Colorado, USA - 13-Cellobiose+Brdu_Long DOE Joint Genome Institute (JGI) 3300049427 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 158214519 364036 186 49 262 83 Restricted 17.22 Metagenome 3300044769 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_263 DOE Joint Genome Institute (JGI) 3300044769 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 649398878 1566073 456 14 810 21 Unrestricted 7.32 Metagenome 2088090000 *Microbiome Permanent Draft Rangifer tarandus platyrhynchus rumen microbial communities from Svalbard, Norway Rangifer tarandus platyrhynchus rumen microbial communities from Svalbard, Norway - Sample 549 Macrogen 2088090000 Metagenome Analysis Newbler No Yes phillip.b.pope@gmail.com Phillip Pope, Phil B. Pope Yes 22701672 Host-associated Mammals Stomach Digestive system Rumen Rangifer tarandus platyrhynchus rumen 78.2166667 15.6333333 299856225 820666 890 13 1373 0 0.0 Metagenome 3300013880 *Microbiome Permanent Draft Microbial communities from methanogenic microcosms from oil petroleum samples laboratory microbial enrichments from Reconcavo Basin petroleum reservoir, Newcastle Upon Tyne, UK - 15 gl 40C L3 15gl 40C L3 UNIVERSIDADE DE SAO PAULO 3300013880 Metagenome Analysis METASPADES k=79 No Yes inatalia.sierra@gmail.com Isabel Natalia Sierra Garcia No Engineered Lab enrichment Anaerobic media Defined media Unclassified Laboratory microcosms 54.97825278 -1.61778056 37539654 55454 41 0 56 1 0.0 Metagenome 3300017414 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12SEP2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017414 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 298480482 536860 118 201 178 426 SRX3926232 Unrestricted 6.9 Metagenome 3300028302 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Site 229 with 0.8UM filter - spades J. Craig Venter Institute 3300028302 Metagenome Analysis Spades v. 3.11.1 Released per Simon Roux. Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater -68.4 78.18278 7.81 27504336 56838 14 0 34 0 0.0 Metagenome 3300038975 *Microbiome Permanent Draft Metagenomes from Anaerobic Digestors at Pulp and Paper Mills Anaerobic digester sludge microbial community from a pulp and paper mill in Quebec, Canada - TemR1171227 MSP University of Toronto 3300038975 Metagenome Analysis spades v. 3.12.0 Yes Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Engineered Bioreactor Unclassified Anaerobic Unclassified anaerobic sludge 48.8062 -79.2314 257646336 296030 64 1 130 0 0.0 Metagenome 3300023058 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - U2m1 DOE Joint Genome Institute (JGI) 3300023058 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9355 -106.9424 134554405 313335 213 25 474 40 SRX3945449, SRX3945450 Unrestricted 0.0 Metagenome 3300038603 *Microbiome Permanent Draft Oyster larvae and tank water microbial communities from oyster tank in Dauphin Island, Alabama, USA Water microbial communities from oyster tank in Dauphin Island, Alabama, USA - 112W U.S. Food and Drug Administration 3300038603 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Aquaculture Unclassified Water 30.25 -88.11 42640657 81028 76 0 82 1 0.0 Metagenome 3300040974 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample33 King Abdullah University of Science and Technology 3300040974 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 23.36 37.3 59107066 126242 60 0 101 1 0.0 Metagenome 3300040392 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_009-M-33-14-20140409-GEN-DNA1 Argonne National Laboratory 3300040392 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 5459737 16118 33 8 54 12 ERX2133948 0.0 Metagenome 3300035223 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P4_June_2010_1000m DOE Joint Genome Institute (JGI) 3300035223 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 48.65 -126.6666 434522953 1103180 408 55 652 75 SRX8188657 Unrestricted 13.13 Metagenome 7000000726 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human attached/keratinized gingiva microbial communities from NIH, USA - visit 1, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000726 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Oral cavity Digestive system Attached/Keratinized gingiva Human 38525673 64287 0 0 0 0 0.0 Metagenome 3300007739 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 764083206 replicate 1 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007739 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 1805198 4511 7 0 18 1 SRX024892 0.0 Metagenome 3300056649 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.20W.6 SIP fraction DOE Joint Genome Institute (JGI) 3300056649 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 108078989 200999 49 5 81 6 Unrestricted 19.89 Metagenome 3300026287 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_1/10/2011_ DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026287 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 202013532 299534 120 6 158 11 SRX2518134 Unrestricted 0.0 Metagenome 3300034032 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 50SNC DOE Joint Genome Institute (JGI) 3300034032 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological biocrust 34.3778 -117.6098 222548454 562124 498 42 809 60 SRX7621465 Unrestricted 7.99 Metagenome 3300027198 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.753 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027198 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 169874970 387428 189 29 309 64 SRX2753573 Unrestricted 0.0 Metagenome 3300008727 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 338793263 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008727 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 105098891 193552 107 0 149 1 0.0 Metagenome 3300021049 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5a_0mM DOE Joint Genome Institute (JGI) 3300021049 Metagenome Analysis spades v. 3.10.1 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 84899382 72710 3 1 7 6 SRX4010501 Unrestricted 67.78 Metagenome 3300017730 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 40 SPOT_SRF_2013-02-13 DOE Joint Genome Institute (JGI) 3300017730 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 312839195 758563 77 56 135 98 SRX7207493, SRX7207494 Unrestricted 0.0 Metagenome 3300001503 *Microbiome Permanent Draft Human axilla skin microbial communities from the University of Liverpool, UK Human axilla skin microbial communities from the University of Liverpool, UK - AX04 3300001503 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Host-associated Mammals: Human Skin Integumentary system Axilla/Armpit Human axilla skin 53.3484 -3.009 15240878 28110 36 0 44 2 0.0 Metagenome 3300007905 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 159551223 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007905 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 5604643 10843 5 0 12 0 SRX023254, SRX023255 0.0 Metagenome 3300006523 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 764508039 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006523 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 71249365 82212 63 0 81 0 0.0 Metagenome 3300070697 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_002-M-20200728-COMP-DNA1 3300070697 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 75773718 218836 134 15 276 23 0.0 Metagenome 3300026269 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV263 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026269 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 407585572 850711 354 3 593 4 SRX2782447 Unrestricted 0.0 Metagenome 3300013425 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100177 University of Pennsylvania 3300013425 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12731779 24162 3 8 6 5 SRX756356 0.0 Metagenome 3300029621 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35740 Beijing Genomics Institute (BGI) 3300029621 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 262202390 342811 210 0 341 0 0.0 Metagenome 3300013990 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00446 Weill Cornell Medical College 3300013990 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -73.78 19309075 21719 16 0 16 0 SRX822415 0.0 Metagenome 3300042238 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D250_3 DOE Joint Genome Institute (JGI) 3300042238 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 190542238 276434 149 8 216 10 Unrestricted 79.88 Metagenome 3300050183 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_8B2_100318_0845 DOE Joint Genome Institute (JGI) 3300050183 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 2310735368 3649769 539 312 1038 414 Unrestricted 26.66 Metagenome 3300046012 *Microbiome Permanent Draft High-throughput characterization of viral-host interactions Soil viral communities from Hopland, California, United States - soilvirus-2020-09-11 DOE Joint Genome Institute (JGI) 3300046012 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes sroux@lbl.gov Simon Roux No Environmental Terrestrial Unclassified Soil Unclassified Soil 39.0006 -123.0798 56617831 142158 25 9 36 15 Unrestricted 559.34 Metagenome 3300070221 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_010-M-20190715-COMP-DNA1 3300070221 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 3446034 11351 24 8 51 14 0.0 Metagenome 3300029297 *Microbiome Permanent Draft Mouse gut microbial communities from Hong Kong to study the effect of probiotic LGG Mouse gut microbial communities from Hong Kong to study the effect of probiotic LGG - LGG W0 University of Hong Kong 3300029297 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 22.3356 114.1826 215950181 375524 299 1 466 4 SRX1153582 0.0 Metagenome 3300003999 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2 DOE Joint Genome Institute (JGI) 3300003999 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov, sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe, Susannah Tringe; Jinglie Zhou No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.05246563 -121.76914021 820356259 2495266 795 6 1850 13 SRX7142764 Unrestricted 0.0 Metagenome 3300012683 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG DOE Joint Genome Institute (JGI) 3300012683 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 1832253883 3838122 1066 158 2202 273 SRX3373352 Unrestricted 0.0 Metagenome 3300019847 *Microbiome Permanent Draft Marine microbial communities from Tor Caldara Marine venting sediment microbial communities from Tor Caldara shallow-water vent,Tyrrhenian Sea,Italy - TCM4 Molecular Research LP (MR DNA) 3300019847 Metagenome Analysis Megahit released by JGI data releasing policy No Yes sushmita.patwardhan@gmail.com Sushmita Patwardhan No Environmental Aquatic Hydrothermal vents Marine Sediment Marine sediment 41.48583333 12.58972222 445852340 1163686 370 6 677 11 0.0 Metagenome 3300027353 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F13 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027353 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 46983982 59482 57 0 50 0 SRX3195101 Unrestricted 0.0 Metagenome 3300009399 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T8 (3) BES Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2) Shell Corporation 3300009399 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 110669057 375567 152 0 278 5 0.0 Metagenome 3300034159 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_0210_18 DOE Joint Genome Institute (JGI) 3300034159 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9142 -147.835 799207252 2002912 639 17 1039 25 SRX7633913 Unrestricted 7.76 Metagenome 3300029875 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37829 Beijing Genomics Institute (BGI) 3300029875 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 190853716 238858 166 2 203 3 0.0 Metagenome 3300013816 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100551 University of Pennsylvania 3300013816 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12091654 22440 8 2 16 6 SRX756203 0.0 Metagenome 3300051795 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_75 DOE Joint Genome Institute (JGI) 3300051795 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -76.91 160.935 336717112 461385 62 16 73 19 Restricted 0.0 Metagenome 3300002911 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm DOE Joint Genome Institute (JGI) 3300002911 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.73825 -123.6301 335135091 808117 398 32 686 29 SRX2562383 Unrestricted 0.0 Metagenome 3300005783 *Microbiome Permanent Draft Deep-sea sediment bacterial and archaeal communities Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten IX Center for Biotechnology (CeBiTec), Bielefeld Univeristy 3300005783 Metagenome Analysis Idba_ud 1.1.1 released per JGI data release policy No Yes jrapp@mpi-bremen.de Josephine Rapp No Environmental Aquatic Oceanic Marine Sediment sediment 77.950787 -1.627126 71398089 127845 56 1 87 0 0.0 Metagenome 3300009501 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 2_5/28/2013_ DNA (PacBio error correction) DOE Joint Genome Institute (JGI) 3300009501 Metagenome Analysis metalrec v. 1.0.2 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 725689318 1689982 806 65 1395 72 SRX2714819, SRX2885145, SRX2714818, SRX2885144, SRX2714817, SRX2714816, SRX2714815, SRX2714814 Unrestricted 0.0 Metagenome 3300027174 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF040 (SPAdes) DOE Joint Genome Institute (JGI) 3300027174 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 113243718 301562 66 6 145 20 SRX2014398 Unrestricted 0.0 Metagenome 3300006016 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Hot Lake Consortium UCC-R28 (version 3) (version 3) DOE Joint Genome Institute (JGI) 3300006016 Metagenome Analysis spades v. 3.1.0 Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 105221724 168803 79 3 92 9 SRX2575228, SRX2575229, SRX2995877, SRX2575227, SRX2995878, SRX2575231, SRX2575230 Unrestricted 0.0 Metagenome 3300032248 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime Ecozone, Canada - Lake 07-047 Genome Quebec 3300032248 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.70964 -67.188989 650952057 1371157 375 100 706 199 0.0 Metagenome 3300035428 *Microbiome Permanent Draft Mouse fecal microbial communities from various locations Fecal microbial communities from mouse strain Swiss web in Sweden - S Fe12 Beijing Genomics Institute (BGI) 3300035428 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 57.69745 11.98583 197490568 254658 204 0 278 0 0.0 Metagenome 3300033179 *Microbiome Permanent Draft Soil and ectomycorrhiza microbial communities from Populus trichocarpa stands in riparian zones in the Pacific Northwest, United States Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM DOE Joint Genome Institute (JGI) 3300033179 Metagenome Analysis spades v. 3.13.0 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Plants Unclassified Roots Unclassified ectomycorrhiza 44.5508 -123.25 1719212222 2419758 268 99 430 127 SRX7519070 Unrestricted 19.7 Metagenome 3300040481 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_007-M-20170612-COMP-DNA1 Battelle Memorial Institute 3300040481 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 3961077 11526 29 8 65 11 0.0 Metagenome 3300041970 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego desert, Southern California, United States - 2020_S1 DOE Joint Genome Institute (JGI) 3300041970 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified Soil 33.3052 -116.2547 307974693 787985 455 2 929 7 SRX14810457 Unrestricted 8.89 Metagenome 3300040998 *Microbiome Permanent Draft Paddy soil microbial communities from Vercelli, Italy Paddy soil microbial communities from Vercelli, Italy - timepoint3 Max Planck Institute for Terrestrial Microbiology 3300040998 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes bei@mpi-marburg.mpg.de Qicheng Bei No Environmental Terrestrial Paddy field/soil Soil Unclassified Paddy soil 45.3241611 8.37385833 734333812 1043707 88 8 177 8 0.0 Metagenome 3300000575 *Microbiome Draft Alkaline sediment microbial communities from Soda lakes and Soda Solonchak soils Alkaline brine water microbial communities from Picturesque Lake, Kulunda Steppe, Russia - 4KL_010_BRINE DOE Joint Genome Institute (JGI) 3300000575 Metagenome Analysis released based on JGI ITS Yes Yes g.muijzer@uva.nl Gerard Muyzer No Environmental Aquatic Lake Non-marine Saline and Alkaline Brine Alkaline brine water 51.43 79.52 551273204 1241114 317 25 602 31 Unrestricted 0.0 Metagenome 3300046345 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_126 DOE Joint Genome Institute (JGI) 3300046345 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9703 -106.997 70876676 234076 304 42 486 77 Restricted 0.0 Metagenome 3300042433 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME12Oct2004-rr0730 DOE Joint Genome Institute (JGI) 3300042433 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 379894420 603285 185 39 256 48 Unrestricted 29.73 Metagenome 3300045681 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Cordillera ecozone, Canada - Lake 13-519 Genome Quebec 3300045681 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 60.107692 -128.80679 1354276758 3109841 627 198 952 331 0.0 Metagenome 3300011163 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00412 Weill Cornell Medical College 3300011163 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.67 -73.98 24849642 36133 15 0 20 0 SRX822382 0.0 Metagenome 3300051846 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_USB_098 (version 2) DOE Joint Genome Institute (JGI) 3300051846 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 34904474 35682 38 0 37 0 SRX12729052, SRX12729054, SRX12729053 Restricted 0.0 Metagenome 3300012207 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG DOE Joint Genome Institute (JGI) 3300012207 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.5673 -123.4758 2742107080 5583063 1731 73 3082 139 SRX3372779 Unrestricted 0.0 Metagenome 3300069325 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_060-O-20170718-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069325 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 43116391 131442 86 10 182 9 0.0 Metagenome 3300000396 *Microbiome Draft Soil microbial communities from Kansas Great Prairie, USA, amended with BrdU Amended soil microbial communities from Kansas Great Prairies, USA - acetate and BrdU F2.3 B, extraction BrdU only, no abundance DOE Joint Genome Institute (JGI) 3300000396 Metagenome Analysis clc workbench released based on JGI ITS Yes Yes maude.david@yahoo.fr, janet.jansson@pnnl.gov Maude David, Janet Jansson No Environmental Terrestrial Loam Soil Grasslands Soil 39.0042816 -77.1012173 1006284 3755 5 4 6 6 Unrestricted 0.0 Metagenome 3300048498 *Microbiome Permanent Draft Marine and freshwater sediment microbial communities from various locations Marine sediment microbial communities from Mediterranean Sea - Mediterranean_Core_1_24-28_cm DOE Joint Genome Institute (JGI) 3300048498 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes smtechtm@mtu.edu Stephen Techtmann No Environmental Aquatic Sediment Marine Unclassified Marine sediment 31.971 30.142 389158268 1198813 529 2 898 2 Unrestricted 7.63 Metagenome 3300012927 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300012927 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 3195072038 6908017 1649 190 2951 334 SRX4808260, SRX4808258, SRX4808259, SRX4808255, SRX4808256, SRX4808257, SRX4808261, SRX4808262, SRX4808263 Unrestricted 0.0 Metagenome 3300044962 *Microbiome Permanent Draft Soil microbial communities from Blodgett Forest Research Station, California, USA Soil microbial communities from Blodgett Forest Research Station, California, USA - BWE201406031H1020_TS DOE Joint Genome Institute (JGI) 3300044962 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.912 -120.6615 858299454 1476572 322 52 610 96 Unrestricted 12.44 Metagenome 3300037785 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - ARW9_20151124 DOE Joint Genome Institute (JGI) 3300037785 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 161998901 271893 124 7 172 8 SRX9140175 Unrestricted 95.08 Metagenome 3300047504 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2013 IS1-MC_5cm DOE Joint Genome Institute (JGI) 3300047504 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.213 19.0242 65467862 126560 90 1 184 2 Restricted 45.67 Metagenome 3300050249 *Microbiome Permanent Draft Freshwater microbial communities from Yellowstone Lake, Wyoming, United States Freshwater microbial communities from Yellowstone Lake, Wyoming, United States - 2017-08-10-14m DOE Joint Genome Institute (JGI) 3300050249 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.412 -110.335 841697018 1270713 228 18 278 31 Restricted 28.16 Metagenome 3300037317 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site2_nosalt_MIX_1 DOE Joint Genome Institute (JGI) 3300037317 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Tidal flats microbial mat 20.7452 58.6625 899987020 1310107 317 5 433 6 SRX9169510 Unrestricted 34.46 Metagenome 3300021340 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L442-9m DOE Joint Genome Institute (JGI) 3300021340 Metagenome Analysis spades v. 3.11.1-check Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.775 -93.818 585168494 1318274 476 144 722 221 SRX3984350 Unrestricted 22.47 Metagenome 3300014658 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin02_10_metaG DOE Joint Genome Institute (JGI) 3300014658 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1700063704 3399260 683 54 1101 128 SRX3291956 Unrestricted 5.61 Metagenome 3300025469 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_6_100 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025469 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 259665405 453942 121 0 165 0 SRX3002041 Unrestricted 0.0 Metagenome 3300020687 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 12MAY2008 hypolimnion DOE Joint Genome Institute (JGI) 3300020687 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 61544036 117334 82 6 107 12 Unrestricted 0.0 Metagenome 3300007932 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 158256496 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007932 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 36318865 66056 28 0 57 0 0.0 Metagenome 3300020408 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000925 (ERX555963-ERR599118) CEA Genoscope 3300020408 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 2.0596 -84.553 932074022 2351137 548 40 806 78 0.0 Metagenome 3300059590 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Michigan, United States - E2019-0037 DOE Joint Genome Institute (JGI) 3300059590 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.93166667 -83.5775 219364538 458117 138 32 246 49 Unrestricted 21.16 Metagenome 3300029139 *Microbiome Permanent Draft Infant fecal microbial communities from Pittsburgh, USA Infant fecal microbial communities from Pittsburgh, USA - NECEvent2014_1_4 Banfield Lab, University of California, Berkeley 3300029139 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant fecal 40.4308 -79.9598 7942958 9259 10 0 14 0 0.0 Metagenome 3300013678 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01037 Weill Cornell Medical College 3300013678 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.67 -73.87 13465952 22772 11 0 17 0 SRX822999 0.0 Metagenome 3300070266 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Colorado, USA - CPER_046-M-20210628-COMP-DNA1 3300070266 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 400453 1369 5 0 11 0 0.0 Metagenome 3300009798 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S1_40_50 DOE Joint Genome Institute (JGI) 3300009798 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37229149 -119.2718121 44420984 109627 154 21 336 33 SRX2522701 Unrestricted 0.0 Metagenome 3300069238 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Yellowstone NP, Wyoming, USA - YELL_012-O-20210708-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069238 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 44.944613 -110.433659 3125604789 7412587 1810 212 3408 319 0.0 Metagenome 3300037066 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 S-3-S DOE Joint Genome Institute (JGI) 3300037066 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0475 584314201 1337844 333 38 584 62 SRX8160251 Unrestricted 6.08 Metagenome 3300013333 *Microbiome Permanent Draft Activated sludge bacterial and viral communities from EBPR bioreactors in Australia Activated sludge bacterial and viral communities from EBPR bioreactors in Queensland, Australia - SBR4-V90106 California Institute of Technology 3300013333 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Activated sludge -27.49999 153.01209 8607499 23876 3 0 4 0 SRX1077114 0.0 Metagenome 3300031403 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #88 DOE Joint Genome Institute (JGI) 3300031403 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.457 78.1911 435088067 776801 209 77 255 92 SRX5649319 Unrestricted 33.21 Metagenome 3300002543 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-6-D DOE Joint Genome Institute (JGI) 3300002543 Metagenome Analysis Yes Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 131101666 216563 146 11 224 26 SRX2557341 Unrestricted 0.0 Metagenome 3300014917 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 591_B Beijing Genomics Institute (BGI) 3300014917 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 44605980 55560 25 0 27 0 ERX491253 0.0 Metagenome 3300028908 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in the Atlantic and Pacific Ocean Hydrothermal chimney microbial communities from Main Endeavour vent field at the Juan de Fuca Ridge, Pacific Ocean - Hulk DOE Joint Genome Institute (JGI) 3300028908 Metagenome Analysis spades v. 3.11.1 Yes Yes pgirguis@oeb.harvard.edu Peter Girguis No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal chimney 47.5696 -129.5902 555852493 943778 544 8 843 14 SRX5344193 Unrestricted 20.94 Metagenome 7000000053 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159591683 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000053 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 33983234 44389 0 0 0 0 0.0 Metagenome 3300048891 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Soil microbial communities from greenhouse in W.K. Kellogg Biological Station, Michigan, USA - CIR soil_1b N15 DOE Joint Genome Institute (JGI) 3300048891 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Environmental Terrestrial Unclassified Soil Unclassified Soil 42.40581 -85.40228 1375083562 2291173 484 20 852 28 Unrestricted 14.0 Metagenome 2058419008 *Microbiome Permanent Draft Feline fecal microbial communities from Illinois, USA cat metagenome 2 Research and Testing Laboratory 2058419008 Metagenome Analysis seqman NGEN transcriptome released per JGI data release policy No Yes sdowd@pathogenresearch.org Scot E. Dowd No Host-associated Mammals Large intestine Digestive system Fecal Feline fecal 40.11 -88.4 59461076 177035 157 0 242 0 0.0 Metagenome 3300003792 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 DOE Joint Genome Institute (JGI) 3300003792 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 278948068 511144 167 0 252 0 SRX2770683 Unrestricted 0.0 Metagenome 3300034005 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 26HNS DOE Joint Genome Institute (JGI) 3300034005 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Sub-biocrust Soil Unclassified sub-biocrust soil 34.7856 -115.66 269934430 711795 511 22 924 30 SRX7619820 Unrestricted 7.54 Metagenome 3300000120 *Microbiome Draft Marine microbial communities from chronically polluted sediments in four geographic locations Marine microbial communities from chronically polluted sediments in Adventfjord, Norway - Svalbard Archipelago station 2 sample NOR 13_50m DOE Joint Genome Institute (JGI) 3300000120 Metagenome Analysis released based on JGI ITS Yes Yes hdionisi@cenpat.edu.ar Hebe Dionisi No Environmental Aquatic Intertidal zone Marine Sediment Marine 78.243786 15.656147 127122681 315841 240 171 399 201 Unrestricted 0.0 Metagenome 3300070823 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from North Sterling, Colorado, USA - STER_033-M-20160818-COMP-DNA1 3300070823 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Agricultural land Soil 2380 8 0 0 0 0 0.0 Metagenome 3300004201 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 31_HOW6 DOE Joint Genome Institute (JGI) 3300004201 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 152084119 338079 64 14 151 22 SRX2720209 Unrestricted 0.0 Metagenome 3300025487 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Jul07 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025487 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 238469252 506965 151 101 204 243 SRX2565279 Unrestricted 0.0 Metagenome 3300025608 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025608 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 386401244 675823 217 21 269 33 SRX2570243 Unrestricted 0.0 Metagenome 3300045807 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - S2-R2-B DOE Joint Genome Institute (JGI) 3300045807 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3571 19.051 244450384 606218 160 9 283 28 Unrestricted 5.95 Metagenome 3300026975 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and M2 (SPAdes) DOE Joint Genome Institute (JGI) 3300026975 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 57625499 75048 35 0 54 0 SRX3311646 Unrestricted 0.0 Metagenome 3300011931 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00299 Weill Cornell Medical College 3300011931 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.69 -73.98 13487831 19580 10 2 10 1 SRX822272 0.0 Metagenome 3300011776 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00651 Weill Cornell Medical College 3300011776 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.77 -73.97 36513326 57783 27 0 34 0 SRX822618 0.0 Metagenome 3300034793 *Microbiome Permanent Draft Sediment microbiome project Sediment microbial communities from wetland pond in Xixi Nat. Park in Hangzhou, Zhejiang, China - 1 Beijing Genomics Institute (BGI) 3300034793 Metagenome Analysis megahit v. 1.1.3 released by JGI data releasing policy No Yes 17826834892@163.com wang binhao No Environmental Aquatic Pond Freshwater Sediment sediment 30.268 120.04 144758111 199673 64 2 98 3 0.0 Metagenome 3300012043 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ601 (22.06) DOE Joint Genome Institute (JGI) 3300012043 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.1246 164.09 746337424 1667134 616 8 1131 9 SRX3372331 Unrestricted 0.0 Metagenome 3300011127 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_5, 0.02 Toyama Prefectural University 3300011127 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Unclassified marine 37.31041 137.23108 92059424 276474 39 3 75 3 0.0 Metagenome 3300041815 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - C_37_wk_4 DOE Joint Genome Institute (JGI) 3300041815 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9949 -107.07 136949551 375509 198 21 402 19 SRX14809566 Unrestricted 7.02 Metagenome 3300001244 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 13SEPL2008 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300001244 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 1552852 4105 15 3 18 5 SRX3310666 Unrestricted 0.0 Metagenome 3300001303 *Microbiome Permanent Draft Mangrove swamp biosurfactant microbial communities from Bertioga, Sao Paulo, Brazil Mangrove swamp biosurfactant microbial communities from Bertioga, Sao Paulo, Brazil - Fosmid_F10 3300001303 Metagenome Analysis released by JGI data releasing policy No Yes dfdomingos@uol.com.br Daniela Domingos, Daniela F. Domingos No Environmental Aquatic Oceanic Marine Oil-contaminated sediment Mangrove swamp biosurfactant -23.896944 -46.207778 51927 55 0 0 0 0 0.0 Metagenome 3300049850 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_A_0_control DOE Joint Genome Institute (JGI) 3300049850 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 195856389 464498 377 30 772 33 Unrestricted 0.0 Metagenome 3300001422 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Oil sands microbial communities from Horse River, Alberta, Canada - outcrops McGill University 3300001422 Metagenome Analysis released per user request No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Environmental Terrestrial Sand Soil Oil-contaminated Hydrocarbon resource environments 56.70268 -111.398858 23719607 35050 36 8 45 14 0.0 Metagenome 3300046654 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvCe-F(2) 1-5 DOE Joint Genome Institute (JGI) 3300046654 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3547 19.0434 533600119 891723 239 7 407 14 Restricted 14.0 Metagenome 3300005729 *Microbiome Permanent Draft Microbial assemblages from M. leidyi gut Winter M. leidyi Microbial Assemblages Auburn University 3300005729 Metagenome Analysis CLC Genomics Workbench 8.0.1 released per JGI data release policy No Yes mossant@auburn.edu Anthony Moss No Host-associated Invertebrates Unclassified Ctenophora Unclassified M. leidyi gut -88.083318 30.234331 12469141 41831 7 3 4 4 0.0 Metagenome 3300040592 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_001-M-20131122-COMP-DNA1 Argonne National Laboratory 3300040592 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 1829132 5319 23 1 51 4 ERX2134000 0.0 Metagenome 3300037233 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 P-2-D DOE Joint Genome Institute (JGI) 3300037233 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3535 19.0473 821176398 1481308 273 3 457 7 SRX8147368 Unrestricted 10.55 Metagenome 3300064932 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 739 in Chauvin, Alberta, Canada - S00JY_0684 Microbiome Insights 3300064932 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.4340656 -110.170687 154118692 232094 74 0 118 0 0.0 Metagenome 3300012806 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched millipede-associated microbial communities from UW Madison campus, WI, USA - HID1971M_E1 MG DOE Joint Genome Institute (JGI) 3300012806 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 66644722 88904 45 0 73 0 SRX3564586 Unrestricted 0.0 Metagenome 3300003901 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 m-RNA DAY 99 University of Sao Paulo, Virginia Bioinformatics Institute 3300003901 Metagenome Analysis SoapDeNovo 2 released per PI's request No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 19964384 44338 20 39 44 102 0.0 Metagenome 3300042170 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Leptogorgia sarmentosa from Algarve, Portugal - LS08H v2 Molecular Research LP (MR DNA) 3300042170 Metagenome Analysis Metawrap workflow v. 1.0.8 released by JGI data releasing policy Yes Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 56812749 62750 6 1 6 6 0.0 Metagenome 3300006944 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW DOE Joint Genome Institute (JGI) 3300006944 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Host-associated Plants Nodule Roots Unclassified Root nodules 34.0722 -118.4441 546738667 1041747 133 1227 168 2569 SRX2752615 Unrestricted 0.0 Metagenome 3300035031 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - T9-14 Autonomous University of Barcelona 3300035031 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 60948882 247668 780 0 1413 0 0.0 Metagenome 3300027553 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_04_M0_20 (SPAdes) DOE Joint Genome Institute (JGI) 3300027553 Metagenome Analysis spades v. 3.11.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 326707673 718531 342 48 516 79 SRX2570590 Unrestricted 0.0 Metagenome 3300044515 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 100-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044515 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9274 -106.9741 846871858 1780002 376 59 675 80 Unrestricted 8.54 Metagenome 3300005235 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG08_land_8/20/14_0.20 DOE Joint Genome Institute (JGI) 3300005235 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu, jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield, Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 880747622 1910599 1288 19 2361 71 SRX2725929 Unrestricted 0.0 Metagenome 3300004686 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Oct08 (version 2) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300004686 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 256080401 697629 197 90 308 182 SRX2565220 Unrestricted 0.0 Metagenome 3300017421 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_03OCT2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017421 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 362640014 711154 372 192 524 312 SRX3927017 Unrestricted 6.16 Metagenome 3300006323 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT237_3_0500m University of Hawaii 3300006323 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Aphotic zone Marine 22.75 -158.0 284829478 656809 520 14 807 18 0.0 Metagenome 3300013864 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - In1P-11 SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300013864 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1 -118.1 44177029 66468 25 18 45 22 SRX5057083 Unrestricted 0.0 Metagenome 3300003221 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO21-B DOE Joint Genome Institute (JGI) 3300003221 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 1023459 3414 25 3 32 13 SRX2575534 Unrestricted 0.0 Metagenome 3300047448 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2014 IH-D_5cm DOE Joint Genome Institute (JGI) 3300047448 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.213 19.0246 153673522 280270 137 4 327 10 Restricted 19.47 Metagenome 3300044568 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME28Feb2002-rd0943 DOE Joint Genome Institute (JGI) 3300044568 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 994989269 1548578 265 35 371 64 Unrestricted 24.58 Metagenome 2124908014 *Microbiome Permanent Draft Human palatine tonsil microbial communities from Los Alamos National Lab, USA Human Palatine Tonsils microbiome from visit number 1 of subject 763496533 Los Alamos National Laboratory 2124908014 Metagenome Analysis released per JGI data release policy No Yes BCM No Host-associated Mammals: Human Tonsils Lymphatic system Palatine/Faucial Human palatine tonsil 38.646 -90.224 158765340 291170 22 0 72 0 0.0 Metagenome 3300001111 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 DOE Joint Genome Institute (JGI) 3300001111 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 8113018 26914 114 20 190 34 SRX3311936 Unrestricted 0.0 Metagenome 3300026255 *Microbiome Permanent Draft Anaerobic biogas reactor microbial communites from Washington, USA Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2_A C13 SIP DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026255 Metagenome Analysis spades v. 3.11.1 Yes Yes dacb@uw.edu David Beck Yes 28895946 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic biogas reactor 47.6525 -122.3049 438183791 752677 357 1 545 3 SRX2339136 Unrestricted 0.0 Metagenome 3300070999 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_003-M-20210527-COMP-DNA1 3300070999 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 441839 1515 12 0 19 0 0.0 Metagenome 3300006064 *Microbiome Permanent Draft Biogas reactor microbial communities from Swedish University of Agricultural Sciences, Alnarp, Sweden, and As, Norway that are enriched on cellulose Biogas reactor microbial communities from As, Norway - D1BOC_Hiseq_PacBio7C99_UnincorpCap3 Genomics Core Facility (Oslo University Hospital and University of Oslo) 3300006064 Metagenome Analysis Mira IDBA Cap3 released per JGI data release policy No Yes phillip.b.pope@gmail.com Phillip Pope, Phil B. Pope No Engineered Bioreactor Biogas Anaerobic Unclassified Biogas reactor 59.6 10.8 24072252 35923 8 0 16 0 0.0 Metagenome 3300005328 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG DOE Joint Genome Institute (JGI) 3300005328 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 3811257815 10708891 2846 139 4755 209 SRX2740375 Unrestricted 0.0 Metagenome 3300012131 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC078 MetaG DOE Joint Genome Institute (JGI) 3300012131 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 34.3889 -79.001 138314163 235250 62 37 126 57 SRX3539720 Unrestricted 0.0 Metagenome 3300042525 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Oct2015-rr0670 DOE Joint Genome Institute (JGI) 3300042525 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 969544225 1454170 453 127 588 178 Unrestricted 17.49 Metagenome 3300049268 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA19 DOE Joint Genome Institute (JGI) 3300049268 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 214429782 554553 318 4 584 5 Unrestricted 6.99 Metagenome 3300007538 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG DOE Joint Genome Institute (JGI) 3300007538 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 37.0516 -76.083 538973394 1238516 2 0 1 0 SRX2753472 Unrestricted 0.0 Metagenome 3300038996 *Microbiome Permanent Draft Genetically engineered switchgrass root microbial communities from Knoxville, USA Genetically engineered switchgrass root microbial communities from Knoxville, USA - plot19 University of Tennessee 3300038996 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Host-associated Plants Rhizosphere Roots Soil Plant roots 35.90441 -83.953801 382591772 1102718 278 1 570 11 SRX648992, SRX648994, SRX648993, SRX648996, SRX648995, SRX648997 0.0 Metagenome 3300020544 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 04SEP2011 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020544 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 132457604 265205 98 19 169 32 SRX1989659 Unrestricted 0.0 Metagenome 3300006640 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost305-11B DOE Joint Genome Institute (JGI) 3300006640 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.299 -156.61 1069528547 3746833 972 79 1824 152 SRX2901419 Unrestricted 0.0 Metagenome 3300049215 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Western Region, Iceland - Sphagnum teres H2_TE_ICE DOE Joint Genome Institute (JGI) 3300049215 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 2145762751 2708138 648 76 890 123 SRX14752406 Unrestricted 26.97 Metagenome 3300047189 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2019 MH01_24cm DOE Joint Genome Institute (JGI) 3300047189 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.358 19.0418 341372045 592510 257 8 536 8 Restricted 26.68 Metagenome 3300056833 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - APS4_17W_TP2_16O DOE Joint Genome Institute (JGI) 3300056833 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 2164396820 2840566 541 169 720 226 Unrestricted 23.98 Metagenome 3300007145 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human subgingival plaque microbial communities from NIH, USA - visit 1, subject 763435843 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007145 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human 39.0042816 -77.1012173 67262502 137951 106 0 156 2 0.0 Metagenome 3300070867 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_037-O-20180724-COMP-DNA1 Battelle Memorial Institute 3300070867 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 46.231276 -89.541941 4-4.36 108138563 316176 121 8 240 17 0.0 Metagenome 3300016649 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water reservoir in Singapore - WB_Site 5a, Oct Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016649 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Lake Freshwater Unclassified freshwater 1.35 103.87 44569692 56197 8 2 6 4 0.0 Metagenome 3300037014 *Microbiome Permanent Draft Sediment microbial communities from various lakes in Switzerland Sediment microbial communities from Lake Lucerne, Nidwalden, Switzerland - LL_15 DOE Joint Genome Institute (JGI) 3300037014 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mark.lever@usys.ethz.ch Mark Alexander Lever No Environmental Aquatic Lake Freshwater Sediment sediment 46.9968 8.347 935955903 1580777 418 2 660 0 SRX8399660 Unrestricted 16.78 Metagenome 3300070214 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_005-O-20180801-COMP-DNA1 3300070214 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 121572195 342452 204 76 403 101 0.0 Metagenome 3300047167 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Vasterbotten County, Sweden - Sphagnum balticum 16OTC_BA_DE DOE Joint Genome Institute (JGI) 3300047167 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.183 19.5578 1248724448 2290730 448 103 745 189 SRX14781076 Unrestricted 8.46 Metagenome 3300045926 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P24SSC2_191109_i DOE Joint Genome Institute (JGI) 3300045926 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 559991126 936643 210 0 365 0 SRX20650446 Unrestricted 11.98 Metagenome 3300026810 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 16 (SPAdes) DOE Joint Genome Institute (JGI) 3300026810 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 24325575 54316 40 0 75 0 SRX4338976 Unrestricted 0.0 Metagenome 3300070889 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone National Park, Wyoming, USA - YELL_051-M-20200709-COMP-DNA1 Battelle Memorial Institute 3300070889 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 44.954277 -110.541571 6.12-6.68 4518511 14771 57 6 111 19 0.0 Metagenome 3300044755 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 416-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044755 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9757 -107.0649 318817401 874468 346 29 645 47 Unrestricted 7.88 Metagenome 3300028502 *Microbiome Permanent Draft University of Copenhagen Baltic Metagenome Marine microbial community from the Baltic Sea - Lib5 Science for Life Laboratory (SciLifeLab), Sweden 3300028502 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy No Yes philip.heller@sjsu.edu Philip Heller No Environmental Aquatic Oceanic Marine Photic zone marine 55.8 15.6 5002051 4783 0 0 1 0 0.0 Metagenome 3300030496 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2) (version 2) DOE Joint Genome Institute (JGI) 3300030496 Metagenome Analysis spades v. 3.12.0 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Environmental Terrestrial Agricultural land Soil Unclassified Soil 20.686 -101.875 489012473 1350744 1068 32 1890 74 SRX6855685 Unrestricted 8.74 Metagenome 3300035143 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0608U20 DOE Joint Genome Institute (JGI) 3300035143 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8973 -97.0409 411202722 1074680 558 13 1007 15 SRX8263221 Unrestricted 5.68 Metagenome 3300027713 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027713 Metagenome Analysis spades v. 3.11.1 Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0991 -99.1044 600782898 1305805 492 3 883 5 SRX2753775 Unrestricted 0.0 Metagenome 3300043262 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_5 (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043262 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 212680164 364361 71 5 131 5 SRX9140448 Unrestricted 91.44 Metagenome 3300045206 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_4_F DOE Joint Genome Institute (JGI) 3300045206 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 197456131 233590 113 1 146 2 Unrestricted 127.6 Metagenome 3300029614 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36526 Beijing Genomics Institute (BGI) 3300029614 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 211979770 281948 195 0 275 0 0.0 Metagenome 3300023019 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Soil microbial communities from Bohemian Forest, Czech Republic - CSU1 DOE Joint Genome Institute (JGI) 3300023019 Metagenome Analysis spades v. 3.11.1 Yes Yes baldrian@biomed.cas.cz; kostelecke.uzeniny@seznam.cz Petr Baldrian; Tomas Vetrovsky No Environmental Terrestrial Temperate forest Soil Unclassified soil 49.043 13.6183 33034675 83296 72 10 113 29 SRX4455329 Unrestricted 9.23 Metagenome 3300071072 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Environmental Research Center, Maryland, USA - SERC_004-M-20170710-COMP-DNA1 3300071072 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 2184156 7149 28 2 43 2 0.0 Metagenome 3300043775 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME26Oct2012-rr0319 DOE Joint Genome Institute (JGI) 3300043775 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1405461105 2046271 414 71 522 87 Unrestricted 21.44 Metagenome 3300017828 *Microbiome Permanent Draft Archevir - Metagenome and diversity of hyperhalophilic archaeoviruses Saline water viral communities from hypersaline pond near village of Ngallou, Senegal - P8 GATC-Biotech AG, Konstanz, Germany 3300017828 Metagenome Analysis Idba_ud No Yes sroux@lbl.gov Simon Roux Yes 26472517 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified saline water 14.0491 -16.7624 7736569 16437 0 0 0 0 0.0 Metagenome 3300040254 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_029-O-20170621-COMP-DNA1 Battelle Memorial Institute 3300040254 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 8105973 25288 36 3 72 6 0.0 Metagenome 3300013533 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100198 University of Pennsylvania 3300013533 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 170313 405 3 0 5 0 SRX756701 0.0 Metagenome 3300014619 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -PQiagenBeadWash928-9 Weill Cornell Medical College 3300014619 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.96 12526922 13020 11 2 8 2 SRX823473 0.0 Metagenome 3300064905 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 688 in Beauvallon, Alberta, Canada - S00JY_0402 Microbiome Insights 3300064905 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.394731 -111.1955062 3526590 5581 16 0 31 0 0.0 Metagenome 3300011003 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015 Shell Corporation 3300011003 Metagenome Analysis idba_ud released by JGI data releasing policy No Yes nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis No Environmental Terrestrial Ranch Soil Agricultural land soil 52.172047 -113.738964 3461528718 14971947 1616 37 3214 124 0.0 Metagenome 3300008622 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 765640925 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008622 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 152622707 215113 138 0 216 0 0.0 Metagenome 3300011795 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01307 Weill Cornell Medical College 3300011795 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.88 -73.83 18917896 32985 15 0 18 0 SRX823247 0.0 Metagenome 3300028467 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_07AUG2017_LD1 DOE Joint Genome Institute (JGI) 3300028467 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 43160490 81114 28 36 40 66 SRX5345831 Unrestricted 24.09 Metagenome 3300017466 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS375 with 0.8UM filter JGI facility at Oak Ridge National Laboratory 3300017466 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 30417359 65762 40 4 61 9 0.0 Metagenome 3300005202 *Microbiome Permanent Draft Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich - 47s-99 University of Cincinnati 3300005202 Metagenome Analysis Velvet v. 0.7.57 released per JGI data release policy No Yes rlamendella@lbl.gov Regina Lamendella No Environmental Aquatic Groundwater Freshwater Contaminated Groundwater 40.0 -74.5 0 0 0 0 0 0 0.0 Metagenome 3300026996 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_23-Sept-14 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026996 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 84764034 227948 197 52 338 64 SRX2838894 Unrestricted 0.0 Metagenome 3300014546 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS60_18 University of Hohenheim 3300014546 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 97345251 149624 63 0 117 0 0.0 Metagenome 2189573001 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - FD2 (NaCl 300g/L 5ml) 454 Life Sciences 2189573001 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.804241 -0.372114 353701389 962518 519 210 893 322 0.0 Metagenome 3300006435 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T18 (1) (Live), Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006435 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, nicolas.tsesmetzis@shell.com; ianhead@ncl.ac.uk Nicolas Tsesmetzis, Nicolas Tsesmetzis; Ian Head No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 44792854 89218 52 0 86 0 0.0 Metagenome 3300045133 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_7_C DOE Joint Genome Institute (JGI) 3300045133 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 203388257 239847 124 1 132 1 Unrestricted 95.44 Metagenome 3300003266 *Microbiome Permanent Draft Human fecal microbial communities from Spain Human fecal microbial communities from Spain - Individuo 1 3300003266 Metagenome Analysis released per JGI data releasing policy No Yes abmiguez@esei.uvigo.es Aitor Blanco No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 37999277 58410 69 0 117 0 0.0 Metagenome 3300002924 *Microbiome Permanent Draft Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease - 2012_LB_H16 3300002924 Metagenome Analysis IDBA-UD + SOAPdenovo + GAA made public per user request (Enrique Zozaya - 05/02/16 email) No Yes t.thomas@unsw.edu.au Torsten Thomas Yes 28419766 Host-associated Algae Unclassified Red algae Unclassified Delisea pulchra -33.57 150.15 1098504130 4604683 239 142 597 270 0.0 Metagenome 3300037517 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Aug2014-rr0139 DOE Joint Genome Institute (JGI) 3300037517 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1178523128 1792624 420 57 590 82 SRX9139778 Unrestricted 13.54 Metagenome 3300021540 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen4, Rep 3, Penicillin and Streptomycin DOE Joint Genome Institute (JGI) 3300021540 Metagenome Analysis spades v. 3.11.1-check Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4149 -119.841 60007591 100485 241 7 390 9 SRX4038261 Unrestricted 319.51 Metagenome 3300037831 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site2_nosalt_MVII_4 DOE Joint Genome Institute (JGI) 3300037831 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Tidal flats microbial mat 20.7452 58.6625 499456934 1095731 412 7 800 19 SRX9169873 Unrestricted 11.56 Metagenome 3300025455 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA2.5M (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025455 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu; shaomei.he@gmail.com Katherine McMahon; Shaomei He No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 202384104 408289 172 57 296 84 SRX2518388 Unrestricted 0.0 Metagenome 3300057038 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M2L_9_10 DOE Joint Genome Institute (JGI) 3300057038 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0084363 -81.5683388 969571909 1699090 528 11 977 17 Unrestricted 13.66 Metagenome 3300005922 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIRHL14 DOE Joint Genome Institute (JGI) 3300005922 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli, Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5563 78.1877 7051863 19909 21 0 35 0 SRX2747204 Unrestricted 0.0 Metagenome 3300011846 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00301 Weill Cornell Medical College 3300011846 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.76 -73.98 38840360 67244 24 0 32 0 SRX822274 0.0 Metagenome 3300061720 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Sediment microbial communities from brackish wetlands in San Jose, California, USA - ROC13_2 DOE Joint Genome Institute (JGI) 3300061720 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Intertidal zone Marine Salt marsh sediment Sediment 37.427598 -121.938678 2681538279 3781511 1085 77 1489 144 Unrestricted 18.39 Metagenome 3300051163 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Amazon River, Macapa, Brazil - ROCA197 DOE Joint Genome Institute (JGI) 3300051163 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater -0.1239 -51.0215 572387558 1449751 532 29 1010 33 Restricted 24.68 Metagenome 3300029986 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_1 DOE Joint Genome Institute (JGI) 3300029986 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 1024934212 2151615 655 162 929 250 SRX5799194 Unrestricted 10.28 Metagenome 3300027472 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK07-D (SPAdes) DOE Joint Genome Institute (JGI) 3300027472 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 18054749 59760 68 2 127 3 SRX2575262 Unrestricted 0.0 Metagenome 3300003823 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Aug09 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003823 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 88918568 218171 118 24 195 46 SRX2565943 Unrestricted 0.0 Metagenome 3300048809 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 P1 20-24 DOE Joint Genome Institute (JGI) 3300048809 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.0471 668610842 960244 131 4 208 8 Restricted 17.71 Metagenome 7000000177 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160319967 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000177 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 7283290 15109 0 0 0 0 0.0 Metagenome 3300070792 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountains, Colorado, USA - RMNP_013-M-20200629-COMP-DNA1 3300070792 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 12332254 39164 62 4 108 7 0.0 Metagenome 3300014290 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_080 The George Washington University (GWU) 3300014290 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 48879776 81561 43 4 63 8 SRX656279 0.0 Metagenome 3300020047 *Microbiome Permanent Draft Freshwater viral communities from Chicago Sanitary Ship Canal, USA Freshwater viral communities from Cal-Sag channel, Illinois, USA - 1 University of Illinois-Urbana Champaign 3300020047 Metagenome Analysis SPADES v3.10.1 released by JGI data releasing policy No Yes wtliu@illinois.edu Wen-Tso Liu No Environmental Aquatic River Freshwater Unclassified Freshwater 41.69666 -87.93583 617927304 1302861 3 0 6 0 0.0 Metagenome 3300028489 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1000m DOE Joint Genome Institute (JGI) 3300028489 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified marine 50.0 -145.0 615997829 1369851 433 82 562 82 SRX5244625 Unrestricted 24.03 Metagenome 3300034822 *Microbiome Permanent Draft Eastern Tropical North Pacific Ocean Metagenomes Marine microbial communities from the Eastern Tropical North Pacific Ocean - E17_2_160 Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300034822 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy No Yes mbeman@ucmerced.edu Michael Beman No Environmental Aquatic Oceanic Marine Unclassified Seawater 16.5 -107.2 187683739 245021 93 5 121 4 0.0 Metagenome 3300045961 *Microbiome Permanent Draft Sediment microbial communities from various rivers and their estuaries in the United States Sediment microbial communities from San Diego River, California, United States - BTRS19_Sengupta_3F DOE Joint Genome Institute (JGI) 3300045961 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sg.aditi@gmail.com Aditi Sengupta No Environmental Aquatic River Freshwater Sediment sediment 32.7762 -117.1279 1274738240 2180241 807 67 1388 86 Unrestricted 17.76 Metagenome 3300022187 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3) (version 3) DOE Joint Genome Institute (JGI) 3300022187 Metagenome Analysis spades v. 3.11.1-check Yes Yes chenf@umces.edu; bcampb7@clemson.edu Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.12 -75.25 433738506 996125 52 0 78 0 SRX2838769, SRX3300551, SRX3300552 Unrestricted 0.0 Metagenome 3300034118 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Aug2017-rr0165 DOE Joint Genome Institute (JGI) 3300034118 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1595953241 3244261 857 149 1327 236 SRX7622336 Unrestricted 9.91 Metagenome 3300000375 *Microbiome Draft Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA - Biofuel metagenome 3 version 3 (version 4) DOE Joint Genome Institute (JGI) 3300000375 Metagenome Analysis released based on JGI ITS No Yes hrbeller@lbl.gov Harry Beller Yes 29556105 Engineered Bioreactor Unclassified Anaerobic Unclassified Bioreactor 37.8754404 -122.2477251 4726064 4722 10 0 13 0 Unrestricted 0.0 Metagenome 3300006567 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0770m University of Hawaii 3300006567 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 285494061 615525 412 6 631 14 0.0 Metagenome 3300028535 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_500m DOE Joint Genome Institute (JGI) 3300028535 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified marine 50.0 -145.0 489316995 1087482 286 32 381 52 SRX5244622 Unrestricted 23.95 Metagenome 3300046406 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA093-TCB DOE Joint Genome Institute (JGI) 3300046406 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6875 -83.5012 311192094 883936 284 36 582 54 Unrestricted 7.73 Metagenome 3300045041 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-608 Genome Quebec 3300045041 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 56.240918 -117.734668 1233428826 2847893 507 100 848 227 0.0 Metagenome 3300044682 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Soil microbial communities from peatland in Alberta, Canada - SB-NW 0-10 cm DOE Joint Genome Institute (JGI) 3300044682 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4768 -114.8775 925782371 1373629 226 77 337 92 Unrestricted 12.49 Metagenome 3300028148 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_18SEP2017_LD1 DOE Joint Genome Institute (JGI) 3300028148 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 47197474 106938 61 57 98 71 SRX5345922 Unrestricted 18.44 Metagenome 3300029745 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37176 Beijing Genomics Institute (BGI) 3300029745 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 212190328 279813 210 0 297 1 0.0 Metagenome 3300034165 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Sediment microbial communities from East River floodplain, Colorado, United States - 19_s17 DOE Joint Genome Institute (JGI) 3300034165 Metagenome Analysis metaspades v. 3.13.0 Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Aquatic Sediment Floodplain Unclassified sediment 38.9229 -106.9499 606543690 1455406 549 8 1042 14 SRX7631461 Unrestricted 7.66 Metagenome 3300000240 *Microbiome Permanent Draft Hypersaline stromatolites microbial communitiesfrom Hamelin Pool, Shark Bay, Western Australia Hypersaline stromatolites from Hamelin Pool, Shark Bay, Western Australia, sample from Pustular Mat University of New South Wales 3300000240 Metagenome Analysis released per JGI data release policy No Yes r.ruvindy@gmail.com Rendy Ruvindy No Environmental Aquatic Intertidal zone Marine Microbialites Hypersaline stromatolites -26.435 114.198 8.1 0 0 0 0 0 0 0.0 Metagenome 3300009301 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada T0 (3) T65 (live) enrichments of Methanogenic microbial communities using Athabascan oil sands DE NOVO (2) Shell Corporation 3300009301 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 166090809 528653 152 0 287 4 0.0 Metagenome 3300026886 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgHAB (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026886 Metagenome Analysis spades v. 3.11.1 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 49131848 158669 130 5 269 7 SRX2521233 Unrestricted 0.0 Metagenome 3300012629 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100685 University of Pennsylvania 3300012629 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 20976123 52172 20 0 34 0 SRX756409 0.0 Metagenome 3300023310 *Microbiome Permanent Draft Hydrothermal Fe-rich Mat Reference Genomes Hydrothermal Fe-rich mat microbial community from Loihi Seamount, Hawaii, USA - 674-BM1-C3 University of Delaware 3300023310 Metagenome Analysis metaSPAdes v. 3.10.0 Metagenomes associated with bioRxiv doi:10.1101/722066 Yes Yes mcallis@uw.edu Sean McAllister No Environmental Aquatic Hydrothermal vents Marine Microbial mats Hydrothermal Fe-rich mat 18.901418 -155.258191 97362260 150198 42 0 59 0 0.0 Metagenome 3300056564 *Microbiome Permanent Draft Mealworm larvae gut microbial communities from Newark, Delaware, USA Mealworm larvae gut microbial communities from Newark, Delaware, USA - Gut-D30_PS_oats (Improved Draft) DOE Joint Genome Institute (JGI) 3300056564 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes blenner@udel.edu Mark Blenner No Host-associated Arthropoda: Insects Gut Larva Unclassified Mealworm larvae gut 39.663708 -75.755838 353348638 515152 85 19 120 86 Unrestricted 71.02 Metagenome 3300047304 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mackenzie River, Tsiigehtchic, Northwest Territories, Canada - Mackenzie 2004-7 DOE Joint Genome Institute (JGI) 3300047304 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 67.4333 -133.75 427296705 954600 310 55 535 102 Unrestricted 17.08 Metagenome 3300069525 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_003-O-20160720-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069525 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 231213622 642197 233 51 484 86 0.0 Metagenome 3300009113 *Microbiome Permanent Draft Microbial communities in swimming pool backwashes Microbial communities from sand-filter backwash in Singapore swimming pools - SK-1 Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300009113 Metagenome Analysis megahit released per JGI data release policy Yes Yes martintayqx@gmail.com Martin Tay No Engineered Built environment Unclassified Unclassified Unclassified Swimming pool sandfilter backwash 1.28967 103.85007 72754264 164130 51 23 38 30 0.0 Metagenome 3300000596 *Microbiome Draft Soil microbial communities from Kansas Great Prairie, USA, amended with BrdU Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC DOE Joint Genome Institute (JGI) 3300000596 Metagenome Analysis released based on JGI ITS Yes Yes maude.david@yahoo.fr, janet.jansson@pnnl.gov Maude David, Janet Jansson No Environmental Terrestrial Loam Soil Grasslands Soil 39.100992 -96.608258 118917357 353727 295 16 524 16 Unrestricted 0.0 Metagenome 3300050129 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim2 30-34 DOE Joint Genome Institute (JGI) 3300050129 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.353634 19.04734 620903007 918049 140 4 215 11 Restricted 13.03 Metagenome 3300002620 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A2-12 DOE Joint Genome Institute (JGI) 3300002620 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 350400 1178 31 1 53 3 SRX1991199 Unrestricted 0.0 Metagenome 3300029896 *Microbiome Permanent Draft Cryoconite microbial communities around the Greenland ice sheet Cryoconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_L-C3b DMAC, Technical University of Denmark 3300029896 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Ice Freshwater Cryoconite Cryconite 65.38 -38.53 214289798 375302 89 17 142 24 SRX2579838 0.0 Metagenome 3300022169 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v3) (version 3) DOE Joint Genome Institute (JGI) 3300022169 Metagenome Analysis spades v. 3.11.1-check Yes Yes bcampb7@clemson.edu Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 37.1 -76.0972 95259762 257216 1 1 0 0 SRX3362780, SRX3362781, SRX2753471 Unrestricted 0.0 Metagenome 3300037106 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 E-3-D DOE Joint Genome Institute (JGI) 3300037106 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0467 763344684 1486368 393 5 653 3 SRX8161084 Unrestricted 9.15 Metagenome 3300033781 *Microbiome Permanent Draft Hot spring microbial communities from different geyser basins in Yellowstone National Park, WY, United States Hot spring water microbial communities from Geyser Creek Basin, Yellowstone National Park, WY, United States - GCR.JH_P DOE Joint Genome Institute (JGI) 3300033781 Metagenome Analysis spades v. 3.13.0 Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Unclassified Thermal springs Unclassified hot spring water 44.6903 -110.7293 41249552 77133 21 2 41 5 SRX7584361 Unrestricted 1779.85 Metagenome 3300008051 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from Cariaco Basin, Caribbean Sea - 23_WHOI_OMZ DOE Joint Genome Institute (JGI) 3300008051 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 10.847 -65.114 142649108 245658 231 1 410 0 SRX2752504 Unrestricted 0.0 Metagenome 3300031510 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #129 DOE Joint Genome Institute (JGI) 3300031510 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5596 77.8957 662792909 1407132 250 8 403 24 SRX5650079 Unrestricted 0.0 Metagenome 3300027547 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_25-Nov-14 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027547 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 211828194 601664 474 67 986 115 SRX2838886 Unrestricted 0.0 Metagenome 3300039369 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 240_12M Beijing Genomics Institute (BGI) 3300039369 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 52024059 63124 44 0 47 0 ERX491015 0.0 Metagenome 3300029729 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37229 Beijing Genomics Institute (BGI) 3300029729 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 160969182 202283 137 3 193 5 0.0 Metagenome 3300024467 *Microbiome Permanent Draft Marine bacterial communities from Xiamen coast, China Marine bacterial communities from Xiamen coast, China - S12 State Key Laboratory of Marine Environmental Sciences, Xiamen University 3300024467 Metagenome Analysis denovo v. 3.3 released by JGI data releasing policy No Yes kt6mail@gmail.com Kai Tang No Environmental Aquatic Coastal Marine Unclassified Marine 24.27 118.06 32990252 61905 43 3 67 7 0.0 Metagenome 3300046830 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_141001.NP1 DOE Joint Genome Institute (JGI) 3300046830 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 869706989 1879232 562 136 898 236 Unrestricted 11.72 Metagenome 3300033623 *Microbiome Permanent Draft Metagenomic SGS 2x251 Staggered mock microbial community from ATCC, Manassa, VA, USA - ATCC10 Illumina 3300033623 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Laboratory 38.752303 -77.519989 26154934 34412 17 0 25 0 0.0 Metagenome 3300005910 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKA DOE Joint Genome Institute (JGI) 3300005910 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli, Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 167053133 458227 222 0 389 0 SRX2746697 Unrestricted 0.0 Metagenome 3300041509 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG AgResearch, New Zealand, Mosgeil 3300041509 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Unclassified Roots Unclassified White clover root -43.648506 172.343549 1062932891 2182787 180 52 710 128 0.0 Metagenome 3300010225 *Microbiome Permanent Draft Sitobion avenae (English Grain Aphid) hemolymph microbial communities from Shanxi Taiyuan, China - Region1 Sitobion avenae (English Grain Aphid) hemolymph microbial communities from Shanxi Taiyuan, China - Region1 DNAVision 3300010225 Metagenome Analysis velvet released per JGI data release policy No Yes sarerazack@icloud.com Abdoul Razack SARE No Host-associated Arthropoda: Insects Hemolymph Circulatory system Unclassified insect hemolymph 37.87 112.54 343704580 208395 2 1 3 0 0.0 Metagenome 3300042894 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME30Jan2011DC-rr0531 DOE Joint Genome Institute (JGI) 3300042894 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1078404468 1629734 271 60 349 70 Unrestricted 23.27 Metagenome 3300019736 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BRC_5-6_MG DOE Joint Genome Institute (JGI) 3300019736 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 128517084 316184 230 11 448 25 Unrestricted 3.62 Metagenome 3300049634 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_6_B DOE Joint Genome Institute (JGI) 3300049634 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 188030575 218581 121 2 146 1 Restricted 96.74 Metagenome 3300043039 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Shale gas microbial communities from Fort St. John, British Columbia, Canada - PROGRESS PAD (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043039 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back shale gas 57.0 -122.0 35301792 64404 39 0 60 1 SRX8356933 Unrestricted 324.62 Metagenome 3300036397 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - MU_050217 DOE Joint Genome Institute (JGI) 3300036397 Metagenome Analysis metaspades v. 3.13.0 Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.8784 -89.3541 149575325 442175 269 29 484 37 SRX8889438 Unrestricted 5.99 Metagenome 3300065605 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 800 in Cowley, Alberta, Canada - S00JY_0532 Microbiome Insights 3300065605 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.2618822 -113.3619356 148344690 218950 58 0 111 3 0.0 Metagenome 3300011632 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00735 Weill Cornell Medical College 3300011632 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.98 27245321 43680 11 0 24 0 SRX822702 0.0 Metagenome 3300070635 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_004-O-20190731-COMP-DNA1 3300070635 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 14489388 43464 37 9 65 19 0.0 Metagenome 3300007631 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_H2O_MG DOE Joint Genome Institute (JGI) 3300007631 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Pond water 37.4961 -122.1331 353018812 726209 370 2 602 0 SRX2523451 Unrestricted 0.0 Metagenome 3300042680 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A53 University of California, Davis 3300042680 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 234393993 649155 317 6 558 14 0.0 Metagenome 3300018405 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater microbial communities from Pennsylvania, USA, analyzing microbe dynamics in response to fracking - TARM_MetaG_T2_14 (version 2) DOE Joint Genome Institute (JGI) 3300018405 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic River Freshwater Unclassified watersheds 41.2451 -76.9856 718678970 1517387 1610 13 2848 29 SRX4807070 Unrestricted 28.48 Metagenome 3300008299 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 159571453 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008299 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 209026199 284195 205 0 361 0 0.0 Metagenome 3300004176 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 7_HOW4 DOE Joint Genome Institute (JGI) 3300004176 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 202143796 525544 136 15 242 36 SRX2720108 Unrestricted 0.0 Metagenome 3300046529 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere DOE Joint Genome Institute (JGI) 3300046529 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1214 -123.2701 1466205254 2315742 420 128 615 191 Unrestricted 14.6 Metagenome 3300012057 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC079 MetaG DOE Joint Genome Institute (JGI) 3300012057 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 34.3888 -79.0011 107868010 178581 34 22 42 26 SRX3539727 Unrestricted 0.0 Metagenome 2077657000 *Microbiome Permanent Draft Sulfur spring sediment and crust microbial communities from Zodletone, Oklahoma, USA Sulfur spring sediment and crust microbial communities from Zodletone, Oklahoma, USA - B1 Mogene LC 2077657000 Metagenome Analysis none (individual reads) released per JGI data release policy No Yes aspain@ou.edu Anne M. Spain, Anne Spain No Environmental Aquatic Warm (34-42C) Thermal springs Sediment Sulfur spring sediment and crust 35.100293 -98.749601 6.68-7.05 29898767 85652 15 0 485 0 0.0 Metagenome 3300069549 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Ozarks Complex, AL, USA - LENO_005-M-20160830-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069549 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.85388 -88.16122 33743128 107830 131 4 233 5 0.0 Metagenome 3300038822 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog15 BILS 3300038822 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 4865711 12107 10 2 21 6 ERX1594837 0.0 Metagenome 3300050145 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_SEK1_3_to_RHK1 DOE Joint Genome Institute (JGI) 3300050145 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.154 -124.211 523458416 770008 228 96 371 134 Unrestricted 20.46 Metagenome 3300028840 *Microbiome Permanent Draft Deep ocean water column microbial communities from Yap Trench, western Pacific Ocean Seawater microbial communities from Yap Trench, western Pacific Ocean - 37I-Yap-CTD02-200m 2000bp_Newsun Novogene 3300028840 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Ocean trench Marine Unclassified seawater 9.87 138.5 1044262577 1151857 342 10 392 6 0.0 Metagenome 3300024489 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-229 DOE Joint Genome Institute (JGI) 3300024489 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Unclassified Plant litter Unclassified leaf litter 40.2198 -122.9842 106924056 202244 40 26 34 34 SRX4392066 Unrestricted 49.05 Metagenome 3300039387 *Microbiome Permanent Draft Soil microbial communities from the crude oil polluted soil from Bobrka and the control soil from Bialowieza national park, Poland Contaminated soil microbial communities from oil field in Bobrka, Poland - X1A2 Illumina 3300039387 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy No Yes valeria.imperato@uhasselt.be Valeria Imperato No Environmental Terrestrial Unclassified Soil Oil-contaminated Contaminated soil 49.62633083 21.69249723 18586891 35044 26 4 46 8 0.0 Metagenome 3300000730 *Microbiome Permanent Draft Activated sludge microbial communities from San Jose - Santa Clara Water Pollution Control Plant, CA Activated sludge microbial communities from San Jose/Santa Clara Water Pollution Control Plant, California, USA Illumina 3300000730 Metagenome Analysis Spades 2.3.0 released per JGI data release policy No Yes cleber.ouverney@sjsu.edu Cleber Ouverney No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Activated sludge Activated sludge 37.434249 -121.946397 102581393 103952 54 5 62 3 0.0 Metagenome 3300001486 *Microbiome Permanent Draft Sheep rumen microbial communities from New Zealand from high and low methane emitting sheep Sheep rumen microbial communities from New Zealand - Rank04_low DOE Joint Genome Institute (JGI) 3300001486 Metagenome Analysis Velvet Released because these are assemblies from SRA data No Yes janine.kamke@agresearch.co.nz, janine.kamke@uni-wuerzburg.de Janine Kamke No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen -40.352 175.608 475564825 977896 761 44 1144 82 0.0 Metagenome 3300069471 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_001-M-20131024-COMP-DNA1 re-annotation Argonne National Laboratory 3300069471 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 2080911 6787 34 4 92 7 ERX2133926 0.0 Metagenome 3300044809 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_21BD DOE Joint Genome Institute (JGI) 3300044809 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.3689 -106.1051 1384675657 2187784 397 27 589 38 SRX20649989 Unrestricted 14.26 Metagenome 3300016478 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water catchment in Singapore - WC_Site 2a, Oct Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016478 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 1.35 103.87 107525592 147900 22 4 24 2 0.0 Metagenome 3300020726 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 31JUL2007 hypolimnion DOE Joint Genome Institute (JGI) 3300020726 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 126876739 268848 102 9 171 8 Unrestricted 0.0 Metagenome 3300012645 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100670 University of Pennsylvania 3300012645 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 27578035 60318 25 0 32 0 SRX756424 0.0 Metagenome 3300030366 *Microbiome Permanent Draft Activated sludge bacterial and viral communities from EBPR bioreactors in Australia Activated sludge bacterial and viral communities from EBPR bioreactors in Brisbane, Australia - M92705 California Institute of Technology 3300030366 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Activated sludge -27.485973 153.190699 381955087 677950 227 6 365 11 SRX646155 0.0 Metagenome 3300069616 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_003-M-20170705-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069616 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 126643505 366514 212 31 443 44 0.0 Metagenome 3300029235 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012066-34 Beijing Genomics Institute (BGI) 3300029235 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 186904667 217573 102 0 170 0 0.0 Metagenome 3300035157 *Microbiome Permanent Draft Seawater and sediment microbial communities from various locations Seawater microbial communities from eastern tropical North Pacific Ocean - AMALJGI-DNA-6 DOE Joint Genome Institute (JGI) 3300035157 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bbw@princeton.edu Bess Ward No Environmental Aquatic Oceanic Marine Unclassified seawater 17.206 -110.7114 1221965737 2854223 544 439 979 705 SRX8377356 Unrestricted 12.69 Metagenome 3300025844 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-15 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025844 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 669267708 1165053 606 26 969 42 SRX3198359 Unrestricted 0.0 Metagenome 3300042984 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 160-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300042984 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9829 -107.0092 1231618830 3348097 918 80 1637 114 Unrestricted 7.44 Metagenome 3300015294 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_31MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015294 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 143544549 260442 4 16 8 25 SRX3922907 Unrestricted 10.33 Metagenome 3300022842 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #46 DOE Joint Genome Institute (JGI) 3300022842 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 163226887 304928 91 22 135 28 SRX4396386 Unrestricted 19.55 Metagenome 3300032820 *Microbiome Permanent Draft Comprehensive metagenome and single cell genome sequencing from the open ocean community of North Pacfic Subtropical Gyre, Station ALOHA Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MG DOE Joint Genome Institute (JGI) 3300032820 Metagenome Analysis spades v. 3.13.0 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Unclassified Seawater 22.8644 -158.9436 6860258885 15356541 2839 1313 4582 2153 SRX5781867 Unrestricted 9.06 Metagenome 3300012292 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100546 University of Pennsylvania 3300012292 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3526808 9389 21 2 33 4 SRX756208 0.0 Metagenome 3300007096 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 604812005 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007096 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 92640720 137758 66 0 93 0 0.0 Metagenome 3300029328 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 016_6_30_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029328 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 165231282 209335 147 1 202 0 0.0 Metagenome 3300044661 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Roots microbial communities from millet plant in semiarid region near Thies, Senegal - COC2E DOE Joint Genome Institute (JGI) 3300044661 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Unclassified Roots Unclassified Root 14.75 -16.85 972829325 1471040 22 34 47 71 Unrestricted 29.74 Metagenome 3300033275 *Microbiome Permanent Draft Meromitic Lake A Freshwater microbial communities from meromitic lake A, Ellesmere Island, Canada - Sample 14m re-sequencing Laval University 3300033275 Metagenome Analysis SPADES v. 3.10.1 released by JGI data releasing policy Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 82.99445 -75.443367 579534589 2233916 410 38 843 75 0.0 Metagenome 7000000203 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159571453 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000203 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 115317748 195341 0 0 0 0 0.0 Metagenome 3300002612 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A3-11 DOE Joint Genome Institute (JGI) 3300002612 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 123441 410 24 0 36 0 SRX1991150 Unrestricted 0.0 Metagenome 3300003071 *Microbiome Permanent Draft Marine microbial communities from anoxic basin of Saanich Inlet in Vancouver, Canada Marine microbial communities from anoxic basin of Saanich Inlet - the uncultured SUP05 cluster bacterium DOE Joint Genome Institute (JGI) 3300003071 Metagenome Analysis Made public because these are downloaded from Genbank No Yes sgtringe@lbl.gov Susannah Tringe Yes 19900896 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.589108 -123.503721 1173225 1473 2 0 1 0 0.0 Metagenome 3300005614 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 DOE Joint Genome Institute (JGI) 3300005614 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 6090135692 17057772 4328 504 7300 924 SRX2783789 Unrestricted 0.0 Metagenome 7000000344 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 686765762 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000344 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 173881 507 0 0 0 0 0.0 Metagenome 3300049930 *Microbiome Permanent Draft Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA - 4_s_apr_JRB_CZO DOE Joint Genome Institute (JGI) 3300049930 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dawsonfairbanks@email.arizona.edu Dawson Fairbanks No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.8832033 -106.53744 310221424 550587 265 21 503 36 Unrestricted 16.82 Metagenome 3300004051 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLB_D2 DOE Joint Genome Institute (JGI) 3300004051 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.224518 -122.019257 695676223 2332745 818 14 1751 15 SRX7142933 Unrestricted 0.0 Metagenome 7000000669 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 370425937 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000669 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 60534267 91084 0 0 0 0 0.0 Metagenome 3300027660 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027660 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 432992817 997446 224 31 435 66 SRX3312707 Unrestricted 0.0 Metagenome 3300001410 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 415-1 deep-072012 DOE Joint Genome Institute (JGI) 3300001410 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 66545301 186033 109 2 244 3 SRX1987460 Unrestricted 0.0 Metagenome 7000000136 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159207311 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000136 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 23334242 40365 0 0 0 0 0.0 Metagenome 3300018432 *Microbiome Permanent Draft Populus soil microbial communities from riparian zone of different river systems in the western United States Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T DOE Joint Genome Institute (JGI) 3300018432 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jen.schweitzer@utk.edu Jennifer Schweitzer No Environmental Terrestrial Riparian zone Soil Trees stand soil 45.2639 -110.8632 5172695042 11498729 3817 192 6504 323 SRX3901508 Unrestricted 7.23 Metagenome 3300007129 *Microbiome Permanent Draft Cephalotes ants gut microbiomes Ant gut microbial communities from Cephalotes atratus, Brazil Harvard University 3300007129 Metagenome Analysis IDBA-UD released by Yi Hu Yes Yes pl356@drexel.edu, yihu.bnu@gmail.com Piotr Lukasik, Yi Hu No Host-associated Arthropoda: Insects Gut Digestive system Unclassified ant gut -19.11 -48.24 218359261 386952 37 1 62 6 0.0 Metagenome 3300070602 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone National Park, Wyoming, USA - YELL_003-M-20200708-COMP-DNA1 Battelle Memorial Institute 3300070602 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 44.954777 -110.533202 6.19-6.78 15624818 46817 85 5 203 10 0.0 Metagenome 3300043330 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-281 Genome Quebec 3300043330 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.062317 -100.141832 1502397580 3447339 529 148 876 200 0.0 Metagenome 3300009455 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Groundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Crystal Spring DOE Joint Genome Institute (JGI) 3300009455 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes rstepanauskas@bigelow.org, rstepanauskas@bigelow.org; duane.moser@dri.edu Ramunas Stepanauskas, Ramunas Stepanauskas; Duane Moser No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 36.42 -116.32 830069657 1551304 954 82 1668 123 SRX2948572 Unrestricted 0.0 Metagenome 3300060432 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210605_09_05 DOE Joint Genome Institute (JGI) 3300060432 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 1145402049 1620164 338 264 418 326 Unrestricted 24.4 Metagenome 3300051851 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Butler, South Dakota, USA - 93_901_SD_DR_1m_c3_T1_16O DOE Joint Genome Institute (JGI) 3300051851 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 45.27223 -97.8369 2038483705 3060105 584 18 896 25 Restricted 0.0 Metagenome 3300026118 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026118 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 5532352406 13797816 2558 189 4326 304 SRX2785858 Unrestricted 0.0 Metagenome 3300011419 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT357_2 DOE Joint Genome Institute (JGI) 3300011419 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9776 -107.0023 290398076 682771 408 7 807 17 SRX3539340 Unrestricted 0.0 Metagenome 3300020053 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041401AS metaG (spades assembly) DOE Joint Genome Institute (JGI) 3300020053 Metagenome Analysis spades v. 3.10.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 907517865 1718086 419 29 703 47 SRX3920143 Unrestricted 35.15 Metagenome 3300042549 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME06Jun2000-rr0062 DOE Joint Genome Institute (JGI) 3300042549 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 889857966 1517983 277 34 373 47 Unrestricted 20.07 Metagenome 3300026165 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_B_D2_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026165 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4968 -122.1333 382360592 715442 322 0 535 1 SRX2523449 Unrestricted 0.0 Metagenome 3300039060 *Microbiome Permanent Draft Lettuce associated viral communities from produce distribution center in Michigan, USA Romaine lettuce associated viral communities from produce distribution center in Michigan, USA - FR12 Michigan State University 3300039060 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Romaine lettuce 1190705 2075 10 2 17 4 SRX1429209 0.0 Metagenome 3300015278 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_09MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015278 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 116340443 220547 23 55 47 101 SRX3921609 Unrestricted 9.17 Metagenome 3300029202 *Microbiome Permanent Draft Aquatic microbial community from freshwater and polluted lake from Sweden and India Polluted lake sediment microbial communities from Telengana, India - LAKES1 University of Gothenburg 3300029202 Metagenome Analysis released Yes Yes No Environmental Aquatic Lake Freshwater Sediment Polluted lake sediment 17.5741667 78.3563333 76379555 143317 59 1 132 0 ERX442545 0.0 Metagenome 3300042616 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Neotermes castaneus from BAM Federal Institute for Materials Research and Testing, Berlin, Germany - Nc350 Eurofins MWG Operon 3300042616 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 52.443245 13.287523 1681929798 1772103 280 42 301 71 0.0 Metagenome 3300030321 *Microbiome Permanent Draft Broiler chicken associated microbial communities from animal house in Bologna, Italy Broiler chicken cecum microbial communities from animal house in Bologna, Italy - XT21; Group C Food safety laboratory 3300030321 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Birds Large intestine Digestive system Ceca Broiler chicken cecum 44.3027 11.21504 13533543 28782 54 0 83 0 ERX1378679 0.0 Metagenome 3300042471 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2016-rr0502 DOE Joint Genome Institute (JGI) 3300042471 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1210855297 1847219 480 97 640 148 Unrestricted 18.69 Metagenome 3300002357 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 17AUG2010 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002357 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 12565528 37321 36 7 93 22 SRX1989024 Unrestricted 0.0 Metagenome 3300040307 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Woodworth, Northern Plains, ND, USA - WOOD_002-M-20140925-COMP-DNA1 Argonne National Laboratory 3300040307 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12823 -99.24136 5594637 17247 38 7 75 7 ERX2133987 0.0 Metagenome 3300048515 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - Maria254 DOE Joint Genome Institute (JGI) 3300048515 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Sand Soil Desert sand -78.0485 163.8064 154937225 372569 193 2 390 0 Unrestricted 0.0 Metagenome 3300010932 *Microbiome Permanent Draft Kallisti Limnes Metagenome Study Freshwater microbial communities from the Kallisti Limnes subsea pool, Santorini, Greece - 2-BIOTECH-ROV7-P1 Hellenic Centre for Marine Research (HCMR) 3300010932 Metagenome Analysis MIRA 4.9.5_2 released by JGI data releasing policy Yes Yes ch.christakis@yahoo.gr Christos Christakis No Environmental Aquatic Unclassified Unclassified Unclassified Subsea pool 36.45421 25.40539 6.52 166942853 289366 148 3 215 0 0.0 Metagenome 3300047092 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 soil DOE Joint Genome Institute (JGI) 3300047092 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.588317 -123.193905 6.7 321433251 605711 241 15 452 25 Unrestricted 20.47 Metagenome 3300053571 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Biomass microbial communities from acid-phase anaerobic digester in WWTP, Madison, WI, USA - 20210811_SampleA DOE Joint Genome Institute (JGI) 3300053571 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Sludge Anaerobic digester Unclassified Biomass 43.03331 -89.35633 1354739189 2209844 937 33 1364 45 Unrestricted 27.82 Metagenome 7000000408 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765640925 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000408 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 73019840 137904 0 0 0 0 0.0 Metagenome 7000000687 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 508703490 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000687 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 86272605 142223 0 0 0 0 0.0 Metagenome 3300005986 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 6/11/14 C2 DNA DOE Joint Genome Institute (JGI) 3300005986 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ebyoung@uwm.edu Erica Young, Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 1656190304 4170057 1241 267 2029 492 SRX2747780 Unrestricted 0.0 Metagenome 2029527002 *Microbiome Draft Soil microbial communities from FACE and OTC sites in USA Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- DOE Joint Genome Institute (JGI) 2029527002 Metagenome Analysis Newbler released based on JGI ITS No Yes kuske@lanl.gov Cheryl Kuske No Environmental Terrestrial Sand Soil Desert Soil 36.766667 -115.95 113475182 318771 99 0 188 0 Unrestricted 0.0 Metagenome 3300048568 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - Jacob29 DOE Joint Genome Institute (JGI) 3300048568 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Sand Soil Desert sand -78.012 163.7969 356199571 744503 255 3 491 7 Unrestricted 0.0 Metagenome 3300011605 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00625 Weill Cornell Medical College 3300011605 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.81 -73.9 24471307 39853 21 0 20 0 SRX822592 0.0 Metagenome 3300065632 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 812 in Tilley, Alberta, Canada - S00JY_0329 Microbiome Insights 3300065632 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 50.2538415 -111.39339 168943731 256905 84 2 157 3 0.0 Metagenome 3300031586 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-190 DOE Joint Genome Institute (JGI) 3300031586 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh sediment 42.722 -70.847 496181409 836152 375 2 546 3 SRX6464021 Unrestricted 20.79 Metagenome 3300023208 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Lake Towuti, South Sulawesi, Indonesia - Watercolumn_Towuti2014_125_MG DOE Joint Genome Institute (JGI) 3300023208 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.7 121.4042 840544565 1710229 623 39 981 65 SRX4481792 Unrestricted 29.36 Metagenome 3300041482 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover leaf microbial community from Lincoln, Canterbury, New Zealand - WCL18_7 MetaG AgResearch, New Zealand, Mosgeil 3300041482 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 806446645 1161590 118 59 345 127 0.0 Metagenome 3300022677 *Microbiome Permanent Draft Carpinteria Salt Marsh Metagenomes 2014 to 2017 Sediment microbial communities from hypersaline pond in Carpinteria, CA, United States - Summer T University of California, Irvine 3300022677 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Aquatic Intertidal zone Marine Sediment Sediment 34.401 -119.534 4798179 6013 8 1 8 1 0.0 Metagenome 3300043152 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - CCW_101317 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043152 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.9035 -89.3341 31377529 91910 118 11 206 16 SRX9381725 Unrestricted 28.09 Metagenome 3300034996 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - T1-0 Autonomous University of Barcelona 3300034996 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 75682672 308962 682 1 1364 0 0.0 Metagenome 3300011973 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S04-01-D University of California, Los Angeles 3300011973 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 119263836 238729 122 5 208 4 SRX858927 0.0 Metagenome 3300025599 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_CordA_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025599 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.015896 -122.501663 337221193 639868 249 2 475 13 SRX7142160 Unrestricted 0.0 Metagenome 3300045789 *Microbiome Permanent Draft Seawater and ice microbial communities from Arctic Ocean Melted sea ice microbial communities from Arctic Ocean - MOSAiC PS122_309 DOE Joint Genome Institute (JGI) 3300045789 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Sea ice 87.3239 107.4423 655781369 958578 269 78 397 123 Unrestricted 120.4 Metagenome 3300005745 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS844 Marine Biological Laboratory 3300005745 Metagenome Analysis Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow hydrothermal vent diffuse flow fluid 18.374735 -81.797326 7.55 95261731 125075 19 0 17 0 0.0 Metagenome 2028778000 *Microbiome Permanent Draft Wastewater viral communities from wastewater treatment facility in Singapore Viral communities in wastewater treatment process (IF-no assembly) University of Illinois, Urbana-Champaign 2028778000 Metagenome Analysis not assembled released per JGI data release policy No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Wastewater Dissolved organics (anaerobic) Nutrient removal Unclassified Wastewater 1.332 103.756 125267136 353405 9 0 40 0 0.0 Metagenome 3300025301 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025301 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 43.02 8.37 299369476 644949 76 0 83 2 SRX2753837 Unrestricted 0.0 Metagenome 3300033987 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from deep shales in Oklahoma, United States - K-7-6 DOE Joint Genome Institute (JGI) 3300033987 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back fracking water 35.812 -98.262 136885341 224700 125 1 174 1 SRX7525041 Unrestricted 246.5 Metagenome 3300042878 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06May2016-rr0199 DOE Joint Genome Institute (JGI) 3300042878 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1061274730 1480790 238 31 318 47 Unrestricted 19.2 Metagenome 3300012554 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100472 University of Pennsylvania 3300012554 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9561870 24801 14 0 18 1 SRX756526 0.0 Metagenome 3300028397 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 50D DOE Joint Genome Institute (JGI) 3300028397 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 327337655 654205 223 26 292 36 SRX5171861 Unrestricted 17.61 Metagenome 3300030514 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (v2) (version 3) DOE Joint Genome Institute (JGI) 3300030514 Metagenome Analysis spades v. 3.12.0 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.0936 -100.2988 830522015 2017114 1114 124 2035 214 SRX2124701 Unrestricted 0.0 Metagenome 3300005896 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_204 DOE Joint Genome Institute (JGI) 3300005896 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 281472170 973823 410 7 738 24 SRX2564776, SRX2581054 Unrestricted 0.0 Metagenome 3300070440 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_042-O-20180730-COMP-DNA1 3300070440 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 34765727 98818 96 19 206 34 0.0 Metagenome 3300001734 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Olavius algarvensis symbiont microbial communities from Tuscany, Italy - Type A ELBA extract 1 DOE Joint Genome Institute (JGI) 3300001734 Metagenome Analysis Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 42.8072 10.1411 453868351 1287872 16 16 18 4 SRX2557365 Unrestricted 0.0 Metagenome 3300046383 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA040-TCU DOE Joint Genome Institute (JGI) 3300046383 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6876 -83.5019 380902694 1072012 430 9 796 16 Unrestricted 7.22 Metagenome 3300049158 *Microbiome Permanent Draft Marine sediment microbial communities from Pacific Ocean, California, USA Marine sediment microbial communities from Pacific Ocean, California, USA - FI_001 DOE Joint Genome Institute (JGI) 3300049158 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pjensen@ucsd.edu Paul r. Jensen No Environmental Aquatic Intertidal zone Marine Sediment Marine sediment 32.77 -117.22 1397868563 1358673 204 37 355 60 Unrestricted 11.49 Metagenome 3300024502 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Colum_RepC_8d DOE Joint Genome Institute (JGI) 3300024502 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 170868769 344220 181 9 276 16 SRX4547358 Unrestricted 11.45 Metagenome 3300027964 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111 HiSeq DOE Joint Genome Institute (JGI) 3300027964 Metagenome Analysis spades v. 3.11.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9888 -108.3994 459096028 1056164 479 11 888 16 SRX5340341, SRX5340340 Unrestricted 0.0 Metagenome 3300039644 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA Corn field soil microbial communities from Boone County, Iowa, USA - CC12-Micro-July2012 Iowa State University 3300039644 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land Corn field soil 42.01375 -93.783837 62283397 185902 98 0 205 1 0.0 Metagenome 3300033049 *Microbiome Permanent Draft Characterization of microbial community from North Pond CORK fluids Aquifer fluid microbial communities from North Pond CORKs, Mid-Atlantic Ridge, Atlantic Ocean - Hole 1383C Middle Marine Biological Laboratory 3300033049 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Aquatic Oceanic Marine Oceanic crust Aquifer fluid 22.8 -46.05 283705162 437908 207 2 334 1 0.0 Metagenome 3300013371 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00067 Weill Cornell Medical College 3300013371 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.64 -73.96 79835917 142395 64 0 79 4 SRX822067 0.0 Metagenome 3300027044 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus leukodermatus Group 1 BERMUDA.2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027044 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 201217941 329401 13 7 23 15 SRX2711328 Unrestricted 0.0 Metagenome 3300045767 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - P1-R2-A DOE Joint Genome Institute (JGI) 3300045767 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.355 19.0438 313438715 702187 161 47 279 75 Unrestricted 6.18 Metagenome 3300026822 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A1-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026822 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 31509425 97753 103 2 206 11 SRX1991155 Unrestricted 0.0 Metagenome 3300036840 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_July_plot5_rep3 DOE Joint Genome Institute (JGI) 3300036840 Metagenome Analysis metaspades v. 3.13.0 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6541 -80.6298 1394438693 2414337 566 6 1067 14 SRX8181005 Unrestricted 14.7 Metagenome 3300017575 *Microbiome Permanent Draft Bras del Port Febrero 2015 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CM1 Febrary 2015 University of Valencia 3300017575 Metagenome Analysis idba.1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Non-marine hypersaline water 38.1922 -0.5918 37789183 129692 1 0 0 0 0.0 Metagenome 3300014724 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01235 Weill Cornell Medical College 3300014724 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.65 -73.97 17056856 26520 8 0 20 0 SRX823190 0.0 Metagenome 3300012430 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100339 University of Pennsylvania 3300012430 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 6457806 13123 7 5 21 12 SRX756318 0.0 Metagenome 3300025113 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Groundwater microbial communities from Cold Creek, Nevada to study Microbial Dark Matter (Phase II) - Lower Cold Creek (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025113 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; duane.moser@dri.edu Ramunas Stepanauskas; Duane Moser No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 36.42 -115.74 269219493 666559 449 42 769 74 SRX2948616 Unrestricted 0.0 Metagenome 3300037743 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_051817_70_f DOE Joint Genome Institute (JGI) 3300037743 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2134557309 3318425 614 4 987 7 SRX9161999 Unrestricted 15.21 Metagenome 3300044626 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME11Aug2015-rr0891 DOE Joint Genome Institute (JGI) 3300044626 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1075208166 1564562 458 79 654 117 Unrestricted 17.21 Metagenome 3300025677 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS2_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025677 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 43.77 142.37 520745178 866810 424 3 589 4 SRX2338866 Unrestricted 0.0 Metagenome 3300019482 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Enriched compost microbial communities from Sao Paulo Zoo, Sao Paulo, Brazil - thermophilic consortium ZCTH03_C43 Center for Advanced Technologies in Genomics, Sao Paulo University 3300019482 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Engineered Solid waste Composting Zoo waste Unclassified compost -23.651072 -46.620675 4124071 4476 12 0 10 0 0.0 Metagenome 3300042789 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2015_2_5 NMDC pilot DOE Joint Genome Institute (JGI) 3300042789 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 9420479 12880 8 0 20 1 SRX2752459 0.0 Metagenome 3300002745 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK08-E DOE Joint Genome Institute (JGI) 3300002745 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.4 93425 315 18 3 25 2 SRX1991360 Unrestricted 0.0 Metagenome 3300034376 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 19HNC DOE Joint Genome Institute (JGI) 3300034376 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological hypolithic biocrust 34.7856 -115.66 275980027 652404 502 35 976 41 SRX7615741 Unrestricted 9.05 Metagenome 3300043154 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - HLP_080817 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043154 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.896 -89.3636 24327020 70977 85 4 141 9 SRX9381727 Unrestricted 17.9 Metagenome 3300011393 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New York, USA - TSNY086 MetaG DOE Joint Genome Institute (JGI) 3300011393 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 40.8926 -72.8224 125579441 212498 64 54 85 117 SRX3539721 Unrestricted 0.0 Metagenome 3300045878 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from the Lower Geyser Basin, Yellowstone National Park, WY, United States - MSUNE_LGB_02 University of Wisconsin, Madison 3300045878 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.56485 -110.86005 59195657 92295 42 0 55 0 0.0 Metagenome 3300012552 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100357 University of Pennsylvania 3300012552 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14176879 22380 10 3 17 3 SRX756300 0.0 Metagenome 3300030512 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - At.P.rz (v2) (version 3) DOE Joint Genome Institute (JGI) 3300030512 Metagenome Analysis spades v. 3.12.0 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 20.6863 -101.8747 451196603 816650 584 25 1004 42 SRX2122697 Unrestricted 0.0 Metagenome 3300017731 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 39 SPOT_SRF_2013-01-16 DOE Joint Genome Institute (JGI) 3300017731 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 309396933 762778 94 117 174 198 SRX7207491, SRX7207492 Unrestricted 0.0 Metagenome 3300009187 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG DOE Joint Genome Institute (JGI) 3300009187 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes DAVID.WALSH@CONCORDIA.CA, david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 45.4091 -72.0994 1267149325 2169888 707 416 1099 872 SRX2996446 Unrestricted 0.0 Metagenome 3300017976 *Microbiome Permanent Draft Coral surface mucus layer microbial communities from Montastraea cavernosa, Florida Keys National Marine Sanctuary, Florida, USA - sample 1 Coral surface mucus layer microbial communities from Montastraea cavernosa, Florida Keys National Marine Sanctuary, Florida, USA - sample 1 University of Maryland 3300017976 Metagenome Analysis MEGAHIT v1.1.1 released by JGI data releasing policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified coral surface mucus layer 24.5484806 -81.4059137 240383867 316587 0 7 1 7 SRX2858148 0.0 Metagenome 3300028977 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 282_4M Beijing Genomics Institute (BGI) 3300028977 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 31297326 34238 20 0 39 0 ERX491072 0.0 Metagenome 3300000639 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 09AUG2007 epilimnion DOE Joint Genome Institute (JGI) 3300000639 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300000166 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 200m DOE Joint Genome Institute (JGI) 3300000166 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 46618981 100117 26 0 71 0 Unrestricted 0.0 Metagenome 3300002896 *Microbiome Permanent Draft Soil microbial communities from Kansas (Konza Prairie Natural Area and Manhattan, Kansas, USA) Soil microbial communities from Manhattan, Kansas, USA - Sample 300um Nextera DOE Joint Genome Institute (JGI) 3300002896 Metagenome Analysis manual release request from Christa Yes Yes elbrodie@lbl.gov, ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Unclassified Soil Unclassified Soil 39.214 -96.5852 109255508 342654 161 3 322 16 Unrestricted 0.0 Metagenome 3300013991 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01047 Weill Cornell Medical College 3300013991 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.67 -73.91 17403668 22317 13 0 15 0 SRX823009 0.0 Metagenome 3300029620 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35980 Beijing Genomics Institute (BGI) 3300029620 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 246852373 319221 220 1 313 1 0.0 Metagenome 3300011158 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00073 Weill Cornell Medical College 3300011158 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.62 -73.96 25621363 28456 10 4 15 5 SRX822072 0.0 Metagenome 3300009169 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 DOE Joint Genome Institute (JGI) 3300009169 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wilkins.231@osu.edu, mike.wilkins@colostate.edu Michael Wilkins No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0956 -99.1001 1246113770 2563991 878 46 1549 79 SRX2753778 Unrestricted 0.0 Metagenome 3300013488 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00502 Weill Cornell Medical College 3300013488 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.87 -73.86 17687522 26351 18 0 24 0 SRX822471 0.0 Metagenome 3300009636 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_8_150 DOE Joint Genome Institute (JGI) 3300009636 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 388544363 682473 196 3 330 8 SRX3003289 Unrestricted 0.0 Metagenome 3300013607 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100598 University of Pennsylvania 3300013607 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 5459152 9980 15 6 29 10 SRX756156 0.0 Metagenome 3300054983 *Microbiome Permanent Draft Soil microbial communities from various environments and locations in the USA Soil microbial communities from grassland in Ellensburg, Washington, USA - 1000S_FTA5_BTM_Q DOE Joint Genome Institute (JGI) 3300054983 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nancy.hess@pnnl.gov Nancy Hess No Environmental Terrestrial Grasslands Soil Unclassified soil 46.9216 -120.6586 2085594230 3522112 638 11 1114 15 Unrestricted 15.99 Metagenome 3300001732 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP-97 DOE Joint Genome Institute (JGI) 3300001732 Metagenome Analysis Yes Yes mbsulli@gmail.com, sacinas@icm.csic.es; mbsulli@gmail.com Matthew Sullivan, Silvia G. Acinas; Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 9.2013 -163.4956 81369097 179818 78 0 129 1 SRX4915162 Unrestricted 0.0 Metagenome 3300005439 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG DOE Joint Genome Institute (JGI) 3300005439 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.4774 -85.451 4687837367 12904272 3052 240 5442 458 SRX2745044 Unrestricted 0.0 Metagenome 3300024504 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Colum_RepA_8d DOE Joint Genome Institute (JGI) 3300024504 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 112834832 238218 125 7 202 10 SRX4547360 Unrestricted 18.3 Metagenome 3300027962 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine sediment microbial community from Cabo Rojo, Puerto Rico - PR CR 10% Liquid 1 (SPAdes) DOE Joint Genome Institute (JGI) 3300027962 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Coastal Marine Sediment Marine sediment 17.951083 -67.193167 495698307 935868 452 2 761 6 SRX3311540 Unrestricted 0.0 Metagenome 3300031746 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20 DOE Joint Genome Institute (JGI) 3300031746 Metagenome Analysis spades v. 3.12.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5395 -110.3891 2390457288 5035248 1369 26 2155 31 SRX6380995 Unrestricted 15.26 Metagenome 3300020477 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156) CEA Genoscope 3300020477 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -8.9103 -142.5767 1689091467 3564618 1004 78 1809 166 0.0 Metagenome 3300014722 *Microbiome Permanent Draft Human skin microbial communities from psoriasis patients in Trento, Italy Human skin microbial communities from psoriasis patients in Trento, Italy - SKCT13_b2_10 University of Trento 3300014722 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Skin surface Human skin 46.0667 11.1167 13680232 23229 8 1 17 1 SRX1015633 0.0 Metagenome 3300042767 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S1_30_40 NMDC pilot DOE Joint Genome Institute (JGI) 3300042767 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37229149 -119.2718121 141973442 350236 146 0 304 1 SRX2523174 0.0 Metagenome 3300027042 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 68 (SPAdes) DOE Joint Genome Institute (JGI) 3300027042 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 103999555 260245 119 0 249 1 SRX4341328 Unrestricted 0.0 Metagenome 3300026459 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepA_8d DOE Joint Genome Institute (JGI) 3300026459 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 183072932 386550 189 10 280 11 SRX4547352 Unrestricted 11.44 Metagenome 3300006197 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t30_690M_inflammed - microbial_metagenome University of Texas Southwestern Medical Center 3300006197 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 200803021 400553 142 0 200 5 0.0 Metagenome 3300007288 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159510762 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007288 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 63164153 80919 66 0 83 0 0.0 Metagenome 3300026824 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 27 (SPAdes) DOE Joint Genome Institute (JGI) 3300026824 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 43775853 103697 62 0 128 1 SRX4340640 Unrestricted 0.0 Metagenome 3300070220 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_010-M-20180723-COMP-DNA1 3300070220 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 234437244 613586 224 24 437 36 0.0 Metagenome 3300008719 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 763901136 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008719 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 3887152 4588 4 0 4 0 0.0 Metagenome 3300060434 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210605_09_17 DOE Joint Genome Institute (JGI) 3300060434 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 1058128467 1547709 359 265 445 342 Unrestricted 23.5 Metagenome 3300055721 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.17W.11 SIP fraction DOE Joint Genome Institute (JGI) 3300055721 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 1511898361 2536288 567 133 803 200 Unrestricted 41.84 Metagenome 3300029924 *Microbiome Permanent Draft Crustal fluid microbial communities from North Pond, Mid-Atlantic Ridge, Atlantic Ocean 2014 cruise Crustal fluid microbial communities from North Pond, Mid-Atlantic Ridge, Atlantic Ocean - 1382A 2014 kmer 100 Marine Biological Laboratory 3300029924 Metagenome Analysis IDBA-UD v. 1.1.2 released by JGI data releasing policy No Yes lmseyler@gmail.com Lauren Seyler No Environmental Aquatic Oceanic Marine Unclassified Oceanic crustal fluids 22.75 -46.083 84922899 118075 94 6 144 8 0.0 Metagenome 3300013149 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100379 University of Pennsylvania 3300013149 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 15479611 32341 15 3 20 4 SRX756278 0.0 Metagenome 3300014663 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00188 Weill Cornell Medical College 3300014663 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.64 -73.99 17053543 23473 16 0 16 0 SRX822167 0.0 Metagenome 3300048916 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 DOE Joint Genome Institute (JGI) 3300048916 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Rhizoplane Roots Unclassified Rhizoplane soil 42.40581 -85.40228 1691494973 2850632 663 67 1053 85 Unrestricted 13.5 Metagenome 3300000773 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 14NOV2007 epilimnion DOE Joint Genome Institute (JGI) 3300000773 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300070604 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone National Park, Wyoming, USA - YELL_012-M-20200708-COMP-DNA1 Battelle Memorial Institute 3300070604 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 44.944613 -110.433659 6.05-6.88 15967210 50794 109 16 234 21 0.0 Metagenome 3300029204 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002669-41 Beijing Genomics Institute (BGI) 3300029204 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 147420172 171227 107 1 157 0 0.0 Metagenome 3300042388 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME16Sep2016-rr0834 DOE Joint Genome Institute (JGI) 3300042388 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 520848185 834945 305 62 388 100 Unrestricted 13.56 Metagenome 3300031985 *Microbiome Permanent Draft Microbial communities from the deep biosphere Sediment microbial communities from serpentinizing springs in Manleluag Spring National Park, Philippines - Sample_121018_ML1_whitesediment re-assembly The Marine Biological Laboratory 3300031985 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Alkaline Non-marine Saline and Alkaline Unclassified Sediment 15.67 120.24 169778596 430266 100 7 219 7 SRX2058447 0.0 Metagenome 3300045549 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-473 Genome Quebec 3300045549 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 54.934739 -127.55412 1019999509 2236108 456 121 754 223 0.0 Metagenome 3300009091 *Microbiome Permanent Draft Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300009091 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes christopher.s.miller@ucdenver.edu Christopher Miller, Christopher S. Miller Yes 29146959 Environmental Aquatic Wetlands Freshwater Unclassified Freshwater wetlands 41.384 -82.513 4333935572 8782706 2600 24 4474 57 SRX5010719, SRX5010717, SRX5010718, SRX5010715, SRX5010716, SRX5010713, SRX5010714, SRX5010711, SRX5010712, SRX5010720, SRX5010710, SRX5010721 Unrestricted 0.0 Metagenome 3300003140 *Microbiome Permanent Draft Human fecal microbial communities from Washington University at St. Louis, Missouri, USA, of twins Human fecal microbial communities from Washington University at St. Louis, Missouri, USA, of twins - TS29 Washington University in St. Louis 3300003140 Metagenome Analysis Made public because these are downloaded from Genbank No Yes jgordon@wustl.edu Human Gut Community Users Yes 20363958 Host-associated Mammals: Human Large intestine Digestive system Fecal Huma fecal 38.63549 -90.264891 53705938 66787 3 0 8 0 0.0 Metagenome 3300012278 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100513 University of Pennsylvania 3300012278 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 36091330 79398 52 4 81 7 SRX756241 0.0 Metagenome 3300024123 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU5 DOE Joint Genome Institute (JGI) 3300024123 Metagenome Analysis spades v. 3.11.1 Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 49.0448 13.618 89473698 197686 54 31 96 61 SRX4456987 Unrestricted 41.5 Metagenome 3300005585 *Microbiome Permanent Draft Freshwater lentic microbial communities from the great Laurentian Lakes, MI, USA for biogeochemical studies Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF DOE Joint Genome Institute (JGI) 3300005585 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified Freshwater lentic 44.701094 -82.854085 707147577 1836110 527 37 846 88 SRX2577345 Unrestricted 0.0 Metagenome 3300029343 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 025_10_26_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029343 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 324179305 486902 367 0 484 0 0.0 Metagenome 3300053735 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 endosphere DOE Joint Genome Institute (JGI) 3300053735 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121602 -123.270125 230472435 488366 156 56 267 58 Unrestricted 11.75 Metagenome 3300028856 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N2_4 DOE Joint Genome Institute (JGI) 3300028856 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 362267113 954743 237 13 404 26 SRX5357457 Unrestricted 0.0 Metagenome 3300047094 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2006D11-rr0262 DOE Joint Genome Institute (JGI) 3300047094 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1082684586 1607799 345 26 470 37 Unrestricted 0.0 Metagenome 3300005357 *Microbiome Draft Poplar biomass bioreactor microbial communities from Brookhaven National Lab, NY Poplar biomass bioreactor microbial communities from Brookhaven National Lab, NY, sample from pooled GH fosmids DOE Joint Genome Institute (JGI) 3300005357 Metagenome Analysis Newbler released based on JGI ITS No Yes vdlelied@rti.org Daniel van der Lelie Yes 22629327 Engineered Solid waste Composting Wood Bioreactor Poplar biomass bioreactor 40.869444 -72.886667 1801402 1584 1 0 1 0 Unrestricted 0.0 Metagenome 3300053229 *Microbiome Permanent Draft Soil microbial communities from various environments and locations in the USA Soil microbial communities from grassland in Ellensburg, Washington, USA - 1000S_WSU2_TOP_Q DOE Joint Genome Institute (JGI) 3300053229 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nancy.hess@pnnl.gov Nancy Hess No Environmental Terrestrial Grasslands Soil Unclassified soil 46.9216 -120.6586 2551535760 4232850 824 111 1157 150 Unrestricted 22.95 Metagenome 3300031659 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from Ellis Fjord, Antarctic Ocean - #82 DOE Joint Genome Institute (JGI) 3300031659 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5958 78.1913 880035495 1856502 309 29 670 41 SRX5649556 Unrestricted 22.78 Metagenome 3300040416 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_004-M-20130726-COMP-DNA1 Argonne National Laboratory 3300040416 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 4799192 13569 36 6 68 17 0.0 Metagenome 3300010934 *Microbiome Permanent Draft Kallisti Limnes Metagenome Study Microbial mat microbial communities from the Kallisti Limnes subsea pool, Santorini, Greece - 2-BIOTECH-ROV9-P3 Hellenic Centre for Marine Research (HCMR) 3300010934 Metagenome Analysis MIRA 4.9.5_2 released by JGI data releasing policy Yes Yes ch.christakis@yahoo.gr Christos Christakis No Environmental Aquatic Unclassified Unclassified Unclassified Subsea pool microbial mat 36.4542567 25.40523 6.64 236112698 386316 178 2 221 3 0.0 Metagenome 3300037583 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR11_16 DOE Joint Genome Institute (JGI) 3300037583 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Crustal Fluids crustal fluids 47.761 -127.7612 161833340 286038 187 7 278 5 SRX9096401 Unrestricted 251.96 Metagenome 7000000068 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 764487809 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000068 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 179786 452 0 0 0 0 SRX024869, SRX098549 0.0 Metagenome 3300040671 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dead Lake, Ozarks Complex, AL, USA - DELA_001-M-20160825-COMP-DNA1 Battelle Memorial Institute 3300040671 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 32.54172 -87.80389 1326458 4643 13 1 26 0 0.0 Metagenome 2088090001 *Microbiome Permanent Draft Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNB Beijing Genomics Institute (BGI), Lifesequencing S.L. 2088090001 Metagenome Analysis Not Assembled released per JGI data release policy No Yes manuel.fernandez@eez.csic.es Fernandez-Lopez, Manuel No Host-associated Plants Rhizosphere Roots Soil Quercus rhizosphere 36.94932 -3.4176 82333954 237205 114 12 325 0 0.0 Metagenome 3300065634 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 815 in Dunmore, Alberta, Canada - S00JY_0318 Microbiome Insights 3300065634 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.5656823 -110.2741187 25734589 40479 29 0 66 0 0.0 Metagenome 3300002986 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska, USA - Barrow Graham LP Incubations 004-31A DOE Joint Genome Institute (JGI) 3300002986 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.28381 -156.5985 229709800 421673 199 1 368 4 SRX1990922 Unrestricted 0.0 Metagenome 7000000015 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2 of subject 158337416 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000015 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 1746803 1729 0 0 0 0 0.0 Metagenome 3300026337 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen5, Rep 2 DOE Joint Genome Institute (JGI) 3300026337 Metagenome Analysis spades v. 3.11.1 Yes Yes xpeng@seoe.sc.edu; momalley@engineering.ucsb.edu Xuefeng (Nick) Peng; Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 11411377 16944 34 0 56 0 SRX5645578 Unrestricted 0.0 Metagenome 3300013881 *Microbiome Permanent Draft Microbial communities from methanogenic microcosms from oil petroleum samples laboratory microbial enrichments from Reconcavo Basin petroleum reservoir, Newcastle Upon Tyne, UK - DNA Enri 2 DNA Enri2 UNIVERSIDADE DE SAO PAULO 3300013881 Metagenome Analysis METASPADES k=79 No Yes inatalia.sierra@gmail.com Isabel Natalia Sierra Garcia No Engineered Lab enrichment Anaerobic media Defined media Unclassified Laboratory microcosms 54.97825278 -1.61778056 30446230 57449 39 0 66 0 0.0 Metagenome 3300006081 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS906_Marker113_DNA Marine Biological Laboratory 3300006081 Metagenome Analysis CLC genomics wb7 released by Caroline Fortunato No Yes cfortunato@mbl.edu, cfortunato@gmail.com; randerson@carleton.edu; elks@mit.edu Caroline Fortunato, Caroline Fortunato; Rika Anderson; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.92274 -129.988104 249836472 581619 144 15 362 30 0.0 Metagenome 3300049605 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA11 DOE Joint Genome Institute (JGI) 3300049605 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 540866637 1444629 570 8 1035 12 Unrestricted 7.4 Metagenome 2029527004 *Microbiome Permanent Draft Atta cephalotes fungus garden microbial communities from Gamboa, Panama Atta cephalotes fungus garden (ACEF) DOE Joint Genome Institute (JGI) 2029527004 Metagenome Analysis Newbler v. 2.3 Released on Tijana's request (11-25-2014) No Yes gsuen@wisc.edu Garret Suen No Environmental Terrestrial Insects nest Nest Fungus garden/Fungus gallery Atta cephalotes fungus garden 9.1167 -79.7 40623338 74196 10 0 31 0 0.0 Metagenome 3300001093 *Microbiome Permanent Draft Thermal spring microbial communities from Shoshone Spring, Yellowstone National Park 07SHO09A 3300001093 Metagenome Analysis released by JGI data releasing policy No Yes cvesbach@unm.edu Cristina Takacs-Vesbach No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Thermal spring 44.3564059 -110.7977012 8.83 14393631 38519 3 0 10 0 0.0 Metagenome 3300059591 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_70-s34 day 28 DOE Joint Genome Institute (JGI) 3300059591 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 424629608 635082 84 104 133 117 Unrestricted 0.0 Metagenome 3300022844 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1163 DOE Joint Genome Institute (JGI) 3300022844 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 163618968 307577 68 9 94 22 SRX4397411 Unrestricted 17.55 Metagenome 3300032157 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil DOE Joint Genome Institute (JGI) 3300032157 Metagenome Analysis spades v. 3.13.0 Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Environmental Terrestrial Garden Soil Unclassified soil 34.0136 -118.4673 3143561295 6901142 1600 86 2759 148 SRX6453233 Unrestricted 8.65 Metagenome 3300012294 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100639 University of Pennsylvania 3300012294 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3541215 10000 17 0 25 0 SRX756455 0.0 Metagenome 3300021341 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Coastal seawater microbial communities from Marineland, Florida, United States - SWPA TP2 #2 DOE Joint Genome Institute (JGI) 3300021341 Metagenome Analysis spades v. 3.11.1-check Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6703 -81.2145 450317107 715719 261 17 332 25 SRX3985563 Unrestricted 26.16 Metagenome 3300012473 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.12.yng.090610 DOE Joint Genome Institute (JGI) 3300012473 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 64854829 172533 175 27 328 52 SRX3527456 Unrestricted 0.0 Metagenome 3300025842 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-16 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025842 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 647125447 1137089 610 28 957 27 SRX3198460 Unrestricted 0.0 Metagenome 3300055085 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_106-s41 day 210 DOE Joint Genome Institute (JGI) 3300055085 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1008544973 1449787 146 121 225 151 Unrestricted 46.56 Metagenome 3300001705 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4-11 DOE Joint Genome Institute (JGI) 3300001705 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 544380 1950 27 0 52 0 SRX1990520 Unrestricted 0.0 Metagenome 3300070456 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_001-O-20160727-COMP-DNA1 3300070456 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 53816379 158841 123 3 239 9 0.0 Metagenome 3300042982 *Microbiome Permanent Draft Soil microbial communities from Wonju, South Korea Soil microbial communities from Wonju, South Korea - Sample P4 Macrogen Inc 3300042982 Metagenome Analysis MEGAHIT v. 2.4.2 No Yes mistiers2@gmail.com Jin-Kyung Hong No Environmental Terrestrial Unclassified Soil Unclassified Soil 37.304428 127.911118 346946782 408195 64 2 58 3 0.0 Metagenome 3300015292 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_20JUN2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015292 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 140253746 255383 24 36 26 51 SRX3923151 Unrestricted 10.66 Metagenome 3300006239 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006239 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 4700855 9069 6 0 13 0 0.0 Metagenome 3300000412 *Microbiome Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Salt pond microbial community from Fremont, CA, USA - Pond A23 Liquid 3 DOE Joint Genome Institute (JGI) 3300000412 Metagenome Analysis released based on JGI ITS Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Salt pond 37.472483 -121.97315 56932073 124618 41 1 70 5 Unrestricted 0.0 Metagenome 3300027787 *Microbiome Permanent Draft Agricultural soil microbial communities from Utah and Georgia to study Nitrogen management Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027787 Metagenome Analysis spades v. 3.11.1 Yes Yes jeanette.norton@usu.edu Jeanette Norton No Environmental Terrestrial Agricultural land Soil Unclassified Agricultural soil 33.8834 -83.4195 814831001 1840278 905 80 1468 121 SRX2924237 Unrestricted 0.0 Metagenome 3300036856 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Eucalyptus forests in New South Wales, Australia - Eu_6 DOE Joint Genome Institute (JGI) 3300036856 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Tropical forest Soil Bulk soil soil -34.5 150.0 1081030373 1753177 304 114 463 158 SRX8386826 Unrestricted 16.98 Metagenome 3300025259 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP-146 (SPAdes) DOE Joint Genome Institute (JGI) 3300025259 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es; mbsulli@gmail.com Silvia G. Acinas; Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 37.133 -17.5322 119213724 230162 81 1 95 0 SRX4924343 Unrestricted 0.0 Metagenome 3300048890 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Soil microbial communities from greenhouse in W.K. Kellogg Biological Station, Michigan, USA - CIR soil_1a N15 DOE Joint Genome Institute (JGI) 3300048890 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Environmental Terrestrial Unclassified Soil Unclassified Soil 42.40581 -85.40228 1716939258 2851309 595 21 983 35 Unrestricted 13.98 Metagenome 3300001939 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Block Island, New York, USA - GS009 J. Craig Venter Institute (JCVI) 3300001939 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine 41.09111 -71.60222 37747991 70271 42 1 58 1 0.0 Metagenome 3300005612 *Microbiome Permanent Draft Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2 DOE Joint Genome Institute (JGI) 3300005612 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jeremy.rich@maine.edu Jeremy Rich No Environmental Aquatic Coastal Marine Sediment Marine sediment 1882953805 5839185 1572 60 2905 130 SRX2837919 Unrestricted 0.0 Metagenome 3300027769 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027769 Metagenome Analysis spades v. 3.11.1 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 746384385 1590854 336 88 494 139 SRX2565072 Unrestricted 0.0 Metagenome 7000000342 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158256496 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000342 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 78832019 145109 0 0 0 0 0.0 Metagenome 3300037329 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Glider Lake #422 DOE Joint Genome Institute (JGI) 3300037329 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4625 78.2818 807240908 1345708 196 80 268 154 SRX9174206 Unrestricted 17.36 Metagenome 3300035539 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B2.5_Sample2.Rodeo5.Well662 DOE Joint Genome Institute (JGI) 3300035539 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 100086178 161144 93 0 128 0 SRX8351263 Unrestricted 153.92 Metagenome 3300002614 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A2w-11 DOE Joint Genome Institute (JGI) 3300002614 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 310588 1051 31 0 42 2 SRX1991145 Unrestricted 0.0 Metagenome 3300024936 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 85_LOW11 (SPAdes) DOE Joint Genome Institute (JGI) 3300024936 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 54582849 97720 31 3 39 2 SRX2721149 Unrestricted 0.0 Metagenome 3300023063 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-222 DOE Joint Genome Institute (JGI) 3300023063 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Unclassified Plant litter Unclassified leaf litter 40.2526 -123.026 197356059 407602 152 113 201 171 SRX4392064 Unrestricted 13.35 Metagenome 3300038337 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog53 BILS 3300038337 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 3678076 9678 11 0 12 0 ERX1594875 0.0 Metagenome 3300011930 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00697 Weill Cornell Medical College 3300011930 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.83 -73.94 10724213 13920 6 0 6 0 SRX822664 0.0 Metagenome 3300050306 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_68 DOE Joint Genome Institute (JGI) 3300050306 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.598 161.007 456574849 734261 175 8 242 13 SRX18235918 Restricted 25.37 Metagenome 3300006725 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 158256496 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006725 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2618922 3740 3 0 7 0 0.0 Metagenome 3300000121 *Microbiome Draft Marine microbial communities from chronically polluted sediments in four geographic locations Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site MC sample ARG 03_11.3m v1 DOE Joint Genome Institute (JGI) 3300000121 Metagenome Analysis released based on JGI ITS Yes Yes hdionisi@cenpat.edu.ar Hebe Dionisi No Environmental Aquatic Intertidal zone Marine Sediment Marine -54.810872 -68.295525 153670253 477253 255 60 428 76 Unrestricted 0.0 Metagenome 3300014929 *Microbiome Permanent Draft Synthetic microbial community for library methods comparison from University of Liverpool, United Kingdom Synthetic microbial communities for library methods comparison from University of Liverpool, United Kingdom - Mg50 University of Liverpool 3300014929 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 53.405936 -2.9677609 51995784 92435 58 0 68 0 ERX1325912 0.0 Metagenome 3300028285 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS376 with 0.1UM filter - spades JGI facility at Oak Ridge National Laboratory 3300028285 Metagenome Analysis Spades v. 3.11.1 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 12124203 25964 8 3 9 7 0.0 Metagenome 3300004200 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 32_HOW6 DOE Joint Genome Institute (JGI) 3300004200 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 110407330 274270 100 10 174 17 SRX2720210 Unrestricted 0.0 Metagenome 3300009500 *Microbiome Permanent Draft Host-associated microbial communities from peat moss Sphagnum species from Minnesota, USA Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG DOE Joint Genome Institute (JGI) 3300009500 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes joel.kostka@biology.gatech.edu Joel Kostka No Host-associated Plants Unclassified Peat moss Unclassified Host-associated 47.5028 -93.4828 2497261498 4125367 1127 388 1615 637 SRX3006922 Unrestricted 0.0 Metagenome 3300002910 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm DOE Joint Genome Institute (JGI) 3300002910 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 203985677 514977 356 48 592 71 SRX2563718 Unrestricted 0.0 Metagenome 3300036977 *Microbiome Permanent Draft Sediment microbial communities from various lakes in Switzerland Sediment microbial communities from Lake Greifen, Zurich, Switzerland - LG_0.25 DOE Joint Genome Institute (JGI) 3300036977 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mark.lever@usys.ethz.ch Mark Alexander Lever No Environmental Aquatic Lake Freshwater Sediment sediment 47.3519 8.6747 497471670 754665 308 12 455 16 SRX8398541 Unrestricted 13.97 Metagenome 3300041736 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_322 MetaG AgResearch, New Zealand, Mosgeil 3300041736 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1822291791 3579921 356 18 1209 35 0.0 Metagenome 3300041971 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego desert, Southern California, United States - 2020_S2 DOE Joint Genome Institute (JGI) 3300041971 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified Soil 33.3052 -116.2547 225051173 605205 514 32 975 40 SRX14810470 Unrestricted 9.2 Metagenome 3300011634 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00737 Weill Cornell Medical College 3300011634 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.99 29797111 43726 13 0 36 0 SRX822704 0.0 Metagenome 3300042892 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME07May2002-rr0440 DOE Joint Genome Institute (JGI) 3300042892 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 858287372 1348137 224 14 304 23 Unrestricted 25.16 Metagenome 3300059708 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059708 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 170638069 380167 204 53 323 81 SRX2753514 Unrestricted 0.0 Metagenome 2061766000 *Microbiome Draft Benzene-degrading bioreactor microbial communities from Toronto, Ontario, Canada, that are methanogenic Benzene-degrading bioreactor microbial communities from Toronto, Ontario, Canada, that are methanogenic - September 2009 gDNA_4 v2 (version 2) DOE Joint Genome Institute (JGI) 2061766000 Metagenome Analysis lucy / pga released based on JGI ITS No Yes sgtringe@lbl.gov, elizabeth.edwards@utoronto.ca Susannah Tringe, Elizabeth A. Edwards No Engineered Bioremediation Benzene Hydrocarbon Bioreactor Benzene-degrading bioreactor 43.658712 -79.396003 80838838 207753 71 0 126 0 Unrestricted 0.0 Metagenome 3300012919 *Microbiome Permanent Draft Marine microbial communities from the Costa Rica Dome and surrounding waters Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG DOE Joint Genome Institute (JGI) 3300012919 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes msaito@whoi.edu Mak Saito No Environmental Aquatic Oceanic Marine Photic zone seawater 10.0 -145.0 1839305138 4121798 1366 238 2295 400 SRX3375177 Unrestricted 0.0 Metagenome 3300049632 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_4_D DOE Joint Genome Institute (JGI) 3300049632 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 169740428 201974 105 1 119 2 Restricted 81.63 Metagenome 3300039956 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_001-O-20170711-COMP-DNA1 Battelle Memorial Institute 3300039956 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 18651791 51925 36 3 64 6 0.0 Metagenome 3300045680 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Cordillera ecozone, Canada - Lake 13-518 Genome Quebec 3300045680 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 60.063643 -128.699031 1273376873 2839093 584 142 982 234 0.0 Metagenome 3300018018 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150 DOE Joint Genome Institute (JGI) 3300018018 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 745532824 1360471 601 14 1024 18 SRX3960714 Unrestricted 16.33 Metagenome 3300040162 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 056B_R1 University of Maryland 3300040162 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 61.01368333 25.68161944 8757811 16589 13 4 29 6 0.0 Metagenome 3300027315 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_03_M0_10 (SPAdes) DOE Joint Genome Institute (JGI) 3300027315 Metagenome Analysis spades v. 3.11.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 202857767 438371 219 40 374 65 SRX2570688 Unrestricted 0.0 Metagenome 3300030685 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E2_2 DOE Joint Genome Institute (JGI) 3300030685 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 703323980 1498745 608 105 1077 170 SRX5357444 Unrestricted 12.35 Metagenome 3300027368 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepB_8d DOE Joint Genome Institute (JGI) 3300027368 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 235155544 521141 164 19 258 23 SRX5245294 Unrestricted 13.89 Metagenome 3300037728 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site1_salt_MIII_0 DOE Joint Genome Institute (JGI) 3300037728 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Tidal flats microbial mat 20.7609 58.6478 328903407 614407 156 6 265 5 SRX9169797 Unrestricted 18.54 Metagenome 2046860006 *Microbiome Permanent Draft Freshwater sediment microbial communities from Lake Washington, Seattle, USA, for methane and nitrogen cycles Freshwater sediment microbial communities from Lake Washington, Seattle, for methane and nitrogen Cycles - SIP 13C methane aerobic+nitrate DOE Joint Genome Institute (JGI) 2046860006 Metagenome Analysis Newbler released based on JGI ITS No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova Yes 23638358 Environmental Aquatic Lentic Freshwater Sediment Freshwater sediment 47.07 -122.27889 80246742 216380 22 0 49 0 Unrestricted 0.0 Metagenome 3300013283 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01603 Weill Cornell Medical College 3300013283 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.86 -73.89 77743321 134527 55 0 64 0 SRX823418 0.0 Metagenome 3300069388 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Woodworth, Northern Plains, ND, USA - WOOD_001-M-20140702-COMP-DNA1 re-annotation Argonne National Laboratory 3300069388 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12823 -99.24136 5774329 18893 42 1 82 5 ERX2134013 0.0 Metagenome 3300043638 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 171-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043638 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9372 -107.0118 398985283 1132954 488 19 913 35 Unrestricted 6.76 Metagenome 3300038824 *Microbiome Permanent Draft Sediment microbial communities from Lake Clifton, Australia Sediment microbial communities from Lake Clifton, Australia - LCT14M-09 University of Texas, Austin 3300038824 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Sediment Freshwater Unclassified Sediment -32.7178 115.6371 63481149 114595 39 0 73 0 0.0 Metagenome 3300038459 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-1-D (v2) (version 2) DOE Joint Genome Institute (JGI) 3300038459 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0468 843888207 1677942 414 6 726 10 SRX8137853, SRX8137852 Unrestricted 0.0 Metagenome 3300018065 *Microbiome Permanent Draft Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_S_2 metaG DOE Joint Genome Institute (JGI) 3300018065 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes valentine@geol.ucsb.edu David Valentine No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Sediment Hypersaline lake sediment 33.4166 -115.9166 2102980827 4255428 1454 65 2487 105 SRX3905533 Unrestricted 6.64 Metagenome 3300043373 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-427 Genome Quebec 3300043373 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 53.924085 -107.702873 1906028535 4059055 726 311 1161 532 0.0 Metagenome 3300031277 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-30 DOE Joint Genome Institute (JGI) 3300031277 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.759 -70.891 544434986 1112821 426 0 693 5 SRX5358337 Unrestricted 10.04 Metagenome 3300042961 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-422 Genome Quebec 3300042961 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 52.802228 -106.263117 1401019669 3343531 397 67 660 114 0.0 Metagenome 3300000420 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active Layer A2 v3 (version 3) DOE Joint Genome Institute (JGI) 3300000420 Metagenome Analysis Velvet released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300000995 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0627 DOE Joint Genome Institute (JGI) 3300000995 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -28.62 -11.8 17157742 40011 33 0 62 0 SRX1982980 Unrestricted 0.0 Metagenome 3300020436 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984) CEA Genoscope 3300020436 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -8.7788 -17.9098 1039889472 2819431 404 92 709 247 0.0 Metagenome 3300025187 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP2968 (SPAdes) DOE Joint Genome Institute (JGI) 3300025187 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 32.08 -17.26 48537498 106297 72 35 131 52 SRX1981961 Unrestricted 0.0 Metagenome 3300012028 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #401 DOE Joint Genome Institute (JGI) 3300012028 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 84152334 168122 61 2 112 4 SRX3296258 Unrestricted 0.0 Metagenome 3300042041 *Microbiome Permanent Draft Mollusc gills microbial communities from various hydrothermal vent in Atlantic Ocean Mollusc gills microbial communities from Lilliput hydrothermal vent, Atlantic Ocean - BspSym_Li_4_5-1 Max Planck Institute for Marine Microbiology 3300042041 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills -9.5481672 -13.2088327 241849770 288068 3 9 6 1 ERX3367177 0.0 Metagenome 3300069206 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Santa Rita Experimental Range, Tucson, Arizona, USA - SRER_005-M-20210810-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069206 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Desert Soil Unclassified Terrestrial soil 31.828844 -110.823985 3191572084 8321796 2787 133 5521 211 0.0 Metagenome 3300013797 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS844 IDBA reassembly Marine Biological Laboratory 3300013797 Metagenome Analysis reassembly with IDBA_UD released by JGI data releasing policy No Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow hydrothermal vent diffuse flow fluid 18.374735 -81.797326 7.55 196958927 248623 90 0 111 1 0.0 Metagenome 3300046317 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_62 DOE Joint Genome Institute (JGI) 3300046317 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9703 -106.997 549187106 1450589 1942 6 4061 17 Restricted 0.0 Metagenome 3300014786 *Microbiome Permanent Draft Synthetic microbial community for library methods comparison from University of Liverpool, United Kingdom Synthetic microbial communities for library methods comparison from University of Liverpool, United Kingdom - Mg70 University of Liverpool 3300014786 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 53.405936 -2.9677609 146720288 196807 54 0 71 0 ERX1325921 0.0 Metagenome 3300044684 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R DOE Joint Genome Institute (JGI) 3300044684 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 14.75 -16.85 1104395489 1799217 422 50 686 69 Unrestricted 19.85 Metagenome 3300032289 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains Ecozone, Canada - Lake 08-157 Genome Quebec 3300032289 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.425658 -76.848869 572181512 1186823 337 59 615 112 0.0 Metagenome 3300061131 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIF3SW PMA-treated Jet Propulsion Laboratory, California Institute of Technology 3300061131 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 54694210 65662 4 6 5 6 SRX2249361, SRX3808519, SRX2249358, SRX3808502 0.0 Metagenome 3300054059 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_13_10 re-annotation DOE Joint Genome Institute (JGI) 3300054059 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 352622595 733814 206 8 416 11 SRX3003641 0.0 Metagenome 3300047302 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Yukon River, Alaska, USA - Yukon 2004-3 DOE Joint Genome Institute (JGI) 3300047302 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 61.9333 -162.8666 248237746 572030 319 28 556 54 Unrestricted 15.52 Metagenome 3300006656 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T8 (2) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006656 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 44882075 90141 50 0 85 0 0.0 Metagenome 3300028771 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369 DOE Joint Genome Institute (JGI) 3300028771 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040645 -106.94847615 962297291 2419478 471 7 879 19 SRX5355413 Unrestricted 12.5 Metagenome 3300017937 *Microbiome Permanent Draft Coastal wetland sediment microbial communities from the Mid-Atlantic and Southeast Atlantic Coast of USA, responding to salinity intrusion. Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4 DOE Joint Genome Institute (JGI) 3300017937 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Freshwater sediment 35.9061 -76.1569 727812528 1617178 659 42 1074 76 SRX4367174 Unrestricted 5.96 Metagenome 3300008495 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human attached/keratinized gingiva microbial communities from NIH, USA - visit 2, subject 763577454 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008495 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Attached/Keratinized gingiva Human 82251370 134461 53 0 80 0 0.0 Metagenome 3300032267 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada - Lake 06-095 Genome Quebec 3300032267 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.232562 -71.249643 752036508 1589026 440 73 837 167 0.0 Metagenome 3300056870 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 E1 20-24 (re-filtered) (version 2) DOE Joint Genome Institute (JGI) 3300056870 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.35444 19.0458967 284651888 313001 77 3 84 2 Restricted 0.0 Metagenome 3300005620 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP10 Narrow Gauge v1 DOE Joint Genome Institute (JGI) 3300005620 Metagenome Analysis LUCY, PGA released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23755042 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.9694208 -110.7098244 6.5 2918459 4364 4 0 4 0 Unrestricted 0.0 Metagenome 3300053079 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere DOE Joint Genome Institute (JGI) 3300053079 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.587743 -123.193438 757186413 1149476 181 139 258 162 Unrestricted 13.94 Metagenome 2228664009 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Petrochemical wastewater microbial community from Syncrude tailings pond, Wood Buffalo, Alberta, Canada McGill University 2228664009 Metagenome Analysis released per user request No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Lab enrichment Anaerobic media Defined media Unclassified Hydrocarbon resource environments 57.02 -111.55 63065321 177826 58 0 154 0 0.0 Metagenome 3300025636 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025636 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 403369758 742687 301 19 418 21 SRX2569216 Unrestricted 0.0 Metagenome 3300024285 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepA_8d DOE Joint Genome Institute (JGI) 3300024285 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 122108281 264651 102 11 164 13 SRX4547492 Unrestricted 14.09 Metagenome 3300025169 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP1140 (SPAdes) DOE Joint Genome Institute (JGI) 3300025169 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -29.65 92.99 13770270 36531 43 19 77 49 SRX1982626 Unrestricted 0.0 Metagenome 3300029439 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 075_4_30_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029439 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 228376454 338304 309 0 453 0 0.0 Metagenome 3300006348 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2 of subject 158802708 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006348 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 64864155 95168 49 0 60 0 0.0 Metagenome 3300008624 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 250-2.7um Georgia Genomics Facility 3300008624 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 305509197 393480 150 101 178 123 0.0 Metagenome 3300005204 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D2 DOE Joint Genome Institute (JGI) 3300005204 Metagenome Analysis Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.000706 -121.624306 506502221 1606155 719 3 1590 6 SRX7144825 Unrestricted 0.0 Metagenome 3300026376 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-B DOE Joint Genome Institute (JGI) 3300026376 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 164677287 423573 220 15 387 29 SRX4802676 Unrestricted 10.13 Metagenome 3300049003 *Microbiome Permanent Draft Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA - CNF8NT2 DOE Joint Genome Institute (JGI) 3300049003 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sydneyg@ucr.edu Sydney Glassman No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 33.6681 -117.456 1779540455 3061885 654 81 1056 135 Unrestricted 15.54 Metagenome 3300025091 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - Floc-Cal metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025091 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; wswingley@niu.edu Ramunas Stepanauskas; Wesley Swingley No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 41.6655 -87.5437 13-14 107832312 268739 167 13 246 32 SRX2526872 Unrestricted 0.0 Metagenome 7000000613 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 158883629 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000613 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 9213722 11331 0 0 0 0 SRX024553, SRX024554 0.0 Metagenome 3300029585 *Microbiome Permanent Draft Cephalochordate Microbial Metagenomes Captive lancelet gut microbial communities from San Diego, USA - NH014 University of California, San Diego, Scripps Institute of Oceanography 3300029585 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton No Host-associated Cephalochordata Intestine Digestive system Fecal lancelet gut 32.8674 -117.2534 240285316 269847 79 6 87 6 0.0 Metagenome 3300040252 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 073B_R1 University of Maryland 3300040252 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.53556 19.01747 6660154 12048 14 2 18 4 0.0 Metagenome 3300049795 *Microbiome Permanent Draft Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA - 1_d_oct_JRB_CZO DOE Joint Genome Institute (JGI) 3300049795 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dawsonfairbanks@email.arizona.edu Dawson Fairbanks No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.88243 -106.5341008 995613941 1626417 352 5 585 10 Unrestricted 13.91 Metagenome 3300002202 *Microbiome Permanent Draft Freshwater microbial community from Sao Paulo Zoo Lake, Brazil Freshwater microbial communities from San Paulo Zoo lake, Brazil - SEP 2012 3300002202 Metagenome Analysis SoapDeNovo released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Lake -23.651072 -46.620675 122701113 353748 5 2 45 3 0.0 Metagenome 3300005343 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG DOE Joint Genome Institute (JGI) 3300005343 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 42.3948 -85.3738 3935798282 11554852 2907 148 5065 302 SRX2740819 Unrestricted 0.0 Metagenome 3300042133 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB1023D_E14_070716_134 DOE Joint Genome Institute (JGI) 3300042133 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.9457 -103.6985 209529464 557614 269 13 480 26 Unrestricted 6.74 Metagenome 3300054105 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_17_10 re-annotation DOE Joint Genome Institute (JGI) 3300054105 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 331420136 630070 184 47 293 70 SRX3006626 0.0 Metagenome 3300050288 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_48 DOE Joint Genome Institute (JGI) 3300050288 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -75.482 159.591 285676313 390902 40 19 64 24 SRX18235979 Restricted 34.75 Metagenome 3300000885 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and P2 (4) DOE Joint Genome Institute (JGI) 3300000885 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 100180274 188526 121 1 191 0 SRX3311630 Unrestricted 0.0 Metagenome 3300028007 *Microbiome Permanent Draft Soil microbial communities from hillslopes of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 2-1-E_D DOE Joint Genome Institute (JGI) 3300028007 Metagenome Analysis spades v. 3.11.1 Yes Yes laurameredith@email.arizona.edu Laura Meredith No Engineered Artificial ecosystem Soil Mesocosm Unclassified soil 32.5788 -110.8509 357526300 823045 408 17 705 26 SRX5246419 Unrestricted 12.12 Metagenome 3300005924 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome NANO DOE Joint Genome Institute (JGI) 3300005924 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli, Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5602 78.1968 8254505 23103 21 0 42 0 SRX2839846 Unrestricted 0.0 Metagenome 3300022455 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1BM3 JM57 AGRF 3300022455 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 51785446 90743 36 2 53 3 0.0 Metagenome 3300011463 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00711 Weill Cornell Medical College 3300011463 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.87 -73.9 16163252 24074 15 0 22 0 SRX822678 0.0 Metagenome 3300002922 *Microbiome Permanent Draft Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease - 2012_BI_H7 3300002922 Metagenome Analysis IDBA-UD + SOAPdenovo + GAA made public per user request (Enrique Zozaya - 05/02/16 email) No Yes t.thomas@unsw.edu.au Torsten Thomas Yes 28419766 Host-associated Algae Unclassified Red algae Unclassified Delisea pulchra -33.59 151.13 855322052 3348872 190 96 385 202 0.0 Metagenome 3300031524 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3 DOE Joint Genome Institute (JGI) 3300031524 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 4877729547 8864294 1437 203 2190 301 SRX5358016 Unrestricted 15.79 Metagenome 3300049846 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Georgia, USA - altamaha_2019_sed_WHONDRS-S19S_0010 DOE Joint Genome Institute (JGI) 3300049846 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 31.667875 -81.840062 433285889 929473 282 10 542 24 Restricted 0.0 Metagenome 3300035128 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D1105M12 DOE Joint Genome Institute (JGI) 3300035128 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0386 721161128 1729231 656 3 1114 4 SRX8255956 Unrestricted 5.5 Metagenome 3300046785 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_191218.NP1 DOE Joint Genome Institute (JGI) 3300046785 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 696656346 1492158 441 61 693 80 Unrestricted 11.78 Metagenome 3300014945 *Microbiome Permanent Draft Synthetic microbial community for library methods comparison from University of Liverpool, United Kingdom Synthetic microbial communities for library methods comparison from University of Liverpool, United Kingdom - Mg74 University of Liverpool 3300014945 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 53.405936 -2.9677609 68500539 154479 41 0 54 0 ERX1325923 0.0 Metagenome 3300014018 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01094 Weill Cornell Medical College 3300014018 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.64 -73.94 21360722 36233 15 0 21 0 SRX823049 0.0 Metagenome 3300006749 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG DOE Joint Genome Institute (JGI) 3300006749 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.198 -77.499 296523336 685749 26 0 36 0 SRX2926781 Unrestricted 0.0 Metagenome 3300040181 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_016-M-37-14-20140409-GEN-DNA1 Argonne National Laboratory 3300040181 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 8215422 24741 38 9 69 7 0.0 Metagenome 3300071098 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_001-M-20160823-COMP-DNA1 3300071098 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 43456346 129261 88 9 147 14 0.0 Metagenome 3300014065 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00793 Weill Cornell Medical College 3300014065 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.83 -73.93 13340000 19864 8 0 15 0 SRX822759 0.0 Metagenome 3300029357 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 050_3_9_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029357 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 215600375 258138 201 0 274 1 0.0 Metagenome 3300027293 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepA_8d DOE Joint Genome Institute (JGI) 3300027293 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 205014500 362764 117 8 171 5 SRX5245293 Unrestricted 19.78 Metagenome 3300057166 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FL_01 DOE Joint Genome Institute (JGI) 3300057166 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.407926 -82.180036 16071614 26293 7 3 9 8 Restricted 0.0 Metagenome 3300027474 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09.2A5-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300027474 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 19899945 68755 70 2 135 5 SRX2576246 Unrestricted 0.0 Metagenome 3300037345 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Medusa Lake #998 DOE Joint Genome Institute (JGI) 3300037345 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5796 78.245 467829036 915896 225 67 297 110 SRX9377525 Unrestricted 14.49 Metagenome 3300044980 *Microbiome Permanent Draft Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA - PH 28 years plot 15 DOE Joint Genome Institute (JGI) 3300044980 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes luizdomeignoz@gmail.com Luiz Domeignoz Horta No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 42.303 -72.1228 1457236652 2410842 362 63 592 85 SRX15792994 Unrestricted 14.54 Metagenome 3300070794 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountains, Colorado, USA - RMNP_043-M-20200701-COMP-DNA1 3300070794 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 12824180 40804 79 12 122 15 0.0 Metagenome 3300002328 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP06-I5 3300002328 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300050483 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - E12W16 DOE Joint Genome Institute (JGI) 3300050483 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 131103129 253709 221 36 400 64 Unrestricted 22.12 Metagenome 3300020542 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020542 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 121299300 262827 143 9 200 8 SRX1989917 Unrestricted 0.0 Metagenome 3300047335 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Frasne, France - Sphagnum magellanicum 2OTC_MAG_FR DOE Joint Genome Institute (JGI) 3300047335 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 1485809275 2866858 681 168 1139 281 SRX14787460 Unrestricted 7.33 Metagenome 3300038376 *Microbiome Permanent Draft Cryoconite microbiome from cryoconites in White Glacier on Axel Heiberg Island, Canada Cryoconite microbial community from White Glacier on Axel Heiberg Island, Canada - Core2Full2Conc McGill University 3300038376 Metagenome Analysis canu v. 1.9 released by Catherine Maggiori No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Aquatic Ice Freshwater Cryoconite Cryoconite 79.3 -90.5 42092792 69438 38 0 40 0 0.0 Metagenome 3300045525 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mississippi River, Mississippi, USA - NASQAN2012_115 DOE Joint Genome Institute (JGI) 3300045525 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 32.3397 -90.9125 254151196 726091 451 93 937 108 Unrestricted 0.0 Metagenome 3300041001 *Microbiome Permanent Draft Freshwater sediment microbial communities from Alaska Lake sediment microbial communtites from St. Paul Island, Alaska - PH156_485 University of California, Santa Cruz 3300041001 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Sediment Lake sediment 57.18 -170.25 3739591 12166 5 0 16 0 0.0 Metagenome 3300011215 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01473 Weill Cornell Medical College 3300011215 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.57 -73.96 43453085 53183 21 1 30 0 SRX823363 0.0 Metagenome 3300043531 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield ecozone, Canada - Lake 06-268 Genome Quebec 3300043531 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 51.087067 -56.861193 1046098884 2536112 480 131 896 246 0.0 Metagenome 3300024977 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 13_LOW5 (SPAdes) DOE Joint Genome Institute (JGI) 3300024977 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 122069038 222814 65 0 83 0 SRX2720116 Unrestricted 0.0 Metagenome 3300013125 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo - kab_022012_11.25m DOE Joint Genome Institute (JGI) 3300013125 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -1.64 29.05 1276483230 2257747 1122 20 1783 29 SRX7699313 Unrestricted 28.69 Metagenome 3300014710 *Microbiome Permanent Draft Seawater microbial communities from Singapore Strait, Singapore Seawater microbial communities from Singapore Strait, Singapore - Site A Sep Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300014710 Metagenome Analysis CLC workbench released by JGI data releasing policy No Yes erinscm@nus.edu.sg Charmaine Ng No Environmental Aquatic Unclassified Marine Unclassified Seawater 1.205291 103.634563 87929089 108766 17 3 12 8 0.0 Metagenome 3300070778 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_029-M-20180710-COMP-DNA1 3300070778 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 79608669 231210 111 16 208 28 0.0 Metagenome 3300028504 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 12 Selected contigs with viral hallmark genes 2 Autonomous University of Barcelona 3300028504 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 267982 401 0 0 0 0 0.0 Metagenome 3300038595 *Microbiome Permanent Draft Oyster larvae and tank water microbial communities from oyster tank in Dauphin Island, Alabama, USA Water microbial communities from oyster tank in Dauphin Island, Alabama, USA - 113W U.S. Food and Drug Administration 3300038595 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Aquaculture Unclassified Water 30.25 -88.11 22799965 48120 48 0 60 0 0.0 Metagenome 3300043264 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_3500m_C2_0cm2cm (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043264 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.6077 -122.6196 163241309 264428 102 2 169 2 SRX9141344 Unrestricted 70.29 Metagenome 3300027498 *Microbiome Permanent Draft Genome and metagenome analysis of marine red algae Porphyra Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex2 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027498 Metagenome Analysis spades v. 3.11.1 Yes Yes Brawley@maine.edu Susan Brawley No Host-associated Algae Unclassified Red algae Unclassified Marine 50.677 -3.24 379001981 590597 173 11 270 6 SRX2954901 Unrestricted 0.0 Metagenome 3300042926 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-331 Genome Quebec 3300042926 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.149717 -120.23787 1740246176 3892696 555 148 933 315 0.0 Metagenome 3300031027 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_3 DOE Joint Genome Institute (JGI) 3300031027 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 1598633742 3217378 505 60 709 112 SRX5357862 Unrestricted 12.44 Metagenome 3300046021 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TS0 DOE Joint Genome Institute (JGI) 3300046021 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.4139 570237967 1186996 699 2 1074 6 SRX12657373 Unrestricted 0.0 Metagenome 3300032143 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0 DOE Joint Genome Institute (JGI) 3300032143 Metagenome Analysis spades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5395 -110.3891 2959627050 6605117 1891 32 3170 48 SRX6380993 Unrestricted 9.86 Metagenome 3300029612 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35741 Beijing Genomics Institute (BGI) 3300029612 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 213014395 275296 139 1 218 1 0.0 Metagenome 3300071074 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_001-M-20210301-COMP-DNA1 3300071074 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 21058 80 2 0 7 1 0.0 Metagenome 3300000256 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - ample_F_10_SI03_120 DOE Joint Genome Institute (JGI) 3300000256 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Oceanic Marine Photic zone Marine 48.35 -123.3 193892245 429148 127 19 228 25 Unrestricted 0.0 Metagenome 3300042206 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D27_2 DOE Joint Genome Institute (JGI) 3300042206 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 233097915 353054 157 20 193 33 Unrestricted 57.45 Metagenome 3300001695 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A3-12 DOE Joint Genome Institute (JGI) 3300001695 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 176064 611 17 2 41 7 SRX1990521 Unrestricted 0.0 Metagenome 3300003848 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - Or.Sf.rz DOE Joint Genome Institute (JGI) 3300003848 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes avisel@lbl.gov, laila.partida@cinvestav.mx Axel Visel, Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.7658 -100.163 155119242 294891 385 55 627 108 SRX2124703 Unrestricted 0.0 Metagenome 3300056688 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.5W.9 SIP fraction DOE Joint Genome Institute (JGI) 3300056688 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 127261587 247125 67 1 109 0 Unrestricted 20.59 Metagenome 3300044916 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_6_A DOE Joint Genome Institute (JGI) 3300044916 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 212283526 240649 127 1 154 3 Unrestricted 112.35 Metagenome 3300031236 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1 DOE Joint Genome Institute (JGI) 3300031236 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3532 19.0477 7060079772 14033868 1872 170 3030 295 SRX5358018 Unrestricted 11.31 Metagenome 3300060663 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Konza Prairie Bio Station, Kansas, USA - KONZ_046-M-20210720-comp-1 DOE Joint Genome Institute (JGI) 3300060663 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Grasslands Soil Unclassified Terrestrial soil 39.103068 -96.563925 1657246962 2839673 450 13 858 22 Unrestricted 15.84 Metagenome 3300011850 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00349 Weill Cornell Medical College 3300011850 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.58 -74.1 45096410 68286 34 0 44 0 SRX822321 0.0 Metagenome 3300039313 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 240_B Beijing Genomics Institute (BGI) 3300039313 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 5242714 5480 5 0 5 0 ERX491017 0.0 Metagenome 3300001242 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado - Groundwater E2 DOE Joint Genome Institute (JGI) 3300001242 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 26083755 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.53 -107.78 167635681 317553 195 5 321 3 SRX1668434, SRX764832 Unrestricted 0.0 Metagenome 3300021088 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M DOE Joint Genome Institute (JGI) 3300021088 Metagenome Analysis spades v. 3.10.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 1585685487 3629970 640 63 1187 104 SRX4026437 Unrestricted 16.76 Metagenome 3300057121 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2020-0027 DOE Joint Genome Institute (JGI) 3300057121 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.82726 -83.19041 406032808 847501 316 181 506 305 Unrestricted 19.26 Metagenome 3300025500 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_6_40 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025500 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 268870527 522238 106 2 185 5 SRX3002038 Unrestricted 0.0 Metagenome 3300030083 *Microbiome Permanent Draft Coralloid root microbial communities from various locations in Chiapas, Mexico Coralloid root microbial communities from Jiquipilas, Chiapas, Mexico - JPPOOL-T1 Langebio Cinvestav 3300030083 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Plants Unclassified Roots Unclassified Coralloid root 16.655 -92.39972222 14587375 19263 29 0 17 0 0.0 Metagenome 3300028123 *Microbiome Permanent Draft Extreme environments viral communities from various locations Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SI3L DOE Joint Genome Institute (JGI) 3300028123 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Coastal Marine Brine sea-ice brine 71.3731 -156.5049 75319585 159938 27 5 35 4 SRX5248022 Unrestricted 99.06 Metagenome 3300002729 *Microbiome Permanent Draft Marine bryozoan Bugula neritina associated microbial communities from Front Street Docks, Beaufort, NC Marine bryozoan Bugula neritina associated microbial communities from Front Street Docks, Beaufort, NC - Sample 33269 3300002729 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes drikaul@umich.edu Drishti Kaul No Host-associated Invertebrates Gymnolaemates Bryozoans Unclassified Marine bryozoan Bugula neritina associated 34.71607 -76.665238 355916113 689336 1 117 6 142 0.0 Metagenome 3300046652 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-C2 30-34 DOE Joint Genome Institute (JGI) 3300046652 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0434 538829622 843975 236 1 353 1 Restricted 12.38 Metagenome 3300007306 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764892411 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007306 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 39732829 76378 39 0 64 0 0.0 Metagenome 3300001424 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 415-1 shallow-092012 DOE Joint Genome Institute (JGI) 3300001424 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 33220061 82962 88 4 158 10 SRX1987671 Unrestricted 0.0 Metagenome 2022920019 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP18 Washburn Springs #1 v2 (version 2) DOE Joint Genome Institute (JGI) 2022920019 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23720654 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.7649458 -110.4303679 6.4 29273225 53782 358 0 42 0 Unrestricted 0.0 Metagenome 3300001859 *Microbiome Permanent Draft Trichloroethene dechlorinating bioreactor microbial communities from Berkeley, California, USA Trichloroethene dechlorinating bioreactor microbial communities from Berkeley, California, USA - LACBS007C 3300001859 Metagenome Analysis released by JGI data releasing policy No Yes benstenuit@gmail.com Benoit stenuit, Ben A. Stenuit No Engineered Bioremediation Chloroethene Tetrachloroethylene and derivatives Bioreactor Trichloroethene dechlorinating bioreactor 37.87 -122.26 29318296 56576 0 0 1 0 0.0 Metagenome 3300019868 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - U2s1 DOE Joint Genome Institute (JGI) 3300019868 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9354 -106.9424 126340677 305562 245 17 502 20 SRX3948040, SRX3948039 Unrestricted 0.0 Metagenome 3300040594 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_003-M-20130726-COMP-DNA1 Argonne National Laboratory 3300040594 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 1804571 5048 23 2 47 1 0.0 Metagenome 3300006942 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW DOE Joint Genome Institute (JGI) 3300006942 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Host-associated Plants Nodule Roots Unclassified Root nodules 34.0722 -118.4441 434985291 752983 221 2114 314 3822 SRX2752627 Unrestricted 0.0 Metagenome 3300036771 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in New South Wales, Australia - Pe_7 DOE Joint Genome Institute (JGI) 3300036771 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil -34.5 150.0 1164422120 1971584 398 55 613 81 SRX8383188 Unrestricted 20.75 Metagenome 3300004318 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Marine microbial communities from Galveston Bay (MSEDA13C- fraction 7) Shell Corporation 3300004318 Metagenome Analysis SOAPdenovo released per JGI data release policy No Yes ebalsop@lbl.gov, nicolas.tsesmetzis@shell.com Eric Alsop, Nicolas Tsesmetzis No Environmental Aquatic Oceanic Marine Sediment sediment 29.5 -94.76 20226750 55338 19 25 52 42 0.0 Metagenome 3300036936 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8WB15 DOE Joint Genome Institute (JGI) 3300036936 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 594402420 1446894 642 50 1195 78 SRX8379796 Unrestricted 5.79 Metagenome 3300041777 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - A_31_wk_2 DOE Joint Genome Institute (JGI) 3300041777 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9659 -106.983 299127309 815942 317 11 615 14 SRX14808248 Unrestricted 8.87 Metagenome 3300045170 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_7_C DOE Joint Genome Institute (JGI) 3300045170 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 217441727 246693 132 1 147 2 Unrestricted 112.57 Metagenome 3300014550 *Microbiome Permanent Draft Human fecal microbial commmunities from Fecal Microbiota Transplantation (FMT) for ulcerative colitis - University of Washington Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P788T3 University of Washington 3300014550 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26288277 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 93621065 158679 68 0 127 0 SRX1131768 0.0 Metagenome 3300064934 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 740 in Bashaw, Alberta, Canada - S00JY_0477 Microbiome Insights 3300064934 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.40477497 -112.5728765 149417505 214437 74 10 129 14 0.0 Metagenome 3300059698 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059698 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 198280077 498214 209 31 327 66 SRX2753579 Unrestricted 0.0 Metagenome 3300003441 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 m-RNA DAY 99 University of Sao Paulo, Virginia Bioinformatics Institute 3300003441 Metagenome Analysis SoapDeNovo released per JGI data release policy No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 16468884 39376 19 35 46 106 0.0 Metagenome 3300006062 *Microbiome Permanent Draft Mining for adhesins from protozoa-associated epibionts Protozoa-associated epibionts from sheep rumen, Palmerston North, New Zealand - c-myc screened Leibniz Institute 3300006062 Metagenome Analysis Unknown released per JGI data release policy No Yes filomena.ng@agresearch.co.nz Filomena Ng No Host-associated Mammals Stomach Digestive system Rumen Rumen -40.355 175.6117 1233044 4256 3 1 1 2 0.0 Metagenome 3300070379 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_002-O-20200715-COMP-DNA1 3300070379 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 45277701 122431 70 9 142 14 0.0 Metagenome 3300013570 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100359 University of Pennsylvania 3300013570 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3309638 4774 7 0 9 2 SRX756298 0.0 Metagenome 3300027891 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Cubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027891 Metagenome Analysis spades v. 3.11.1 Yes Yes brune@mpi-marburg.mpg.de Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 0.2917 34.856 2676675635 4382844 1342 17 2325 35 SRX3315623, SRX3315622 Unrestricted 0.0 Metagenome 3300013862 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In2P SAF170 SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300013862 Metagenome Analysis SPAdes 3.10.0 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1 -118.1 27255060 37289 23 8 26 10 Unrestricted 0.0 Metagenome 3300021556 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Stylissa sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina ""control"", st36ic 200bp no Eukaryotes last" University of New South Wales 3300021556 Metagenome Analysis IDBA-UD released by Emmanuelle BOTTE Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Stylissa sp. -9.828217 150.820517 122873123 213413 40 9 55 20 0.0 Metagenome 3300039101 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - WEM-2_at_9-10_cm Genome Quebec 3300039101 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89896 -73.80984 729460033 1828174 880 16 1802 26 0.0 Metagenome 2124908012 *Microbiome Permanent Draft Subgingival plaque microbial communities from Los Alamos National Laboratory, USA Human Subgingival plaque microbiome from visit number 1 of subject 763496533 Los Alamos National Laboratory 2124908012 Metagenome Analysis released per JGI data release policy No Yes BCM No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Subgingival plaque 38.646 -90.224 266787564 518154 30 2 109 0 0.0 Metagenome 3300001610 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF026 DOE Joint Genome Institute (JGI) 3300001610 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 681669 1822 13 2 20 2 SRX2014332 Unrestricted 0.0 Metagenome 3300027460 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE17-C (SPAdes) DOE Joint Genome Institute (JGI) 3300027460 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.32 49727435 136020 125 6 201 12 SRX1991449 Unrestricted 0.0 Metagenome 7000000469 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764083206 replicate 1 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000469 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 89262213 161080 0 0 0 0 0.0 Metagenome 3300034522 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from deep shales in Oklahoma, United States - K-3-A DOE Joint Genome Institute (JGI) 3300034522 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back fracking water 35.812 -98.262 71312874 100475 67 7 87 15 SRX8135856 Unrestricted 968.24 Metagenome 3300000986 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Section #2 DOE Joint Genome Institute (JGI) 3300000986 Metagenome Analysis Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.973481 -119.476345 35452264 59552 45 4 78 13 SRX3311901 Unrestricted 0.0 Metagenome 3300070402 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_002-M-20190716-COMP-DNA1 3300070402 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 1162903 3972 17 1 29 2 0.0 Metagenome 3300069480 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_005-M-20170731-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069480 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 21401502 68560 93 13 204 21 0.0 Metagenome 3300070944 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_004-O-20190718-COMP-DNA1 3300070944 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 5482293 17406 46 5 100 16 0.0 Metagenome 3300048509 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_130403.NP2 DOE Joint Genome Institute (JGI) 3300048509 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 486545435 1104380 368 49 573 91 Unrestricted 17.67 Metagenome 3300009655 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNTR4_MetaG DOE Joint Genome Institute (JGI) 3300009655 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 34.65 135.05 593528173 1062322 619 0 970 3 SRX2339076 Unrestricted 0.0 Metagenome 3300023269 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L092-311B-6 DOE Joint Genome Institute (JGI) 3300023269 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 544847223 1207244 629 118 1147 176 SRX4801091 Unrestricted 8.57 Metagenome 3300003523 *Microbiome Permanent Draft Camel rumen microbial communities from Jandagh-Isfahan, Iran Camel rumen microbial communities from Jandagh-Isfahan, Iran - Sample 1 Beijing Genomics Institute (BGI) 3300003523 Metagenome Analysis released per Rekha No Yes jgharechahi@gmail.com Javad Gharechahi Yes 30083229 Host-associated Mammals Stomach Digestive system Rumen Camel rumen 34.041281 54.414582 1259982046 2166453 657 12 2343 20 0.0 Metagenome 3300011619 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00914 Weill Cornell Medical College 3300011619 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.74 -73.87 25663818 41763 15 1 17 0 SRX822877 0.0 Metagenome 3300014003 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01118 Weill Cornell Medical College 3300014003 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.66 -73.88 17007889 26681 10 0 19 0 SRX823073 0.0 Metagenome 3300036802 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in New South Wales, Australia - Pe_2 DOE Joint Genome Institute (JGI) 3300036802 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil -33.6 150.0 2233573943 3657041 474 60 749 94 SRX8386006 Unrestricted 17.26 Metagenome 3300006999 *Microbiome Permanent Draft Non-marine hypersaline water viral communities from Salinas de Anana, Spain Non-marine hypersaline water viral communities from A?ana, Logro?o, Spain -Vir_A?ana_2_PRE University of Alicante 3300006999 Metagenome Analysis IDBA 1.1.1 PRE correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified hypersaline water 42.80111387 -2.985507 25005776 64389 8 2 12 6 0.0 Metagenome 3300045307 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-484 Genome Quebec 3300045307 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 53.977642 -125.898396 943787991 1980757 382 110 611 207 0.0 Metagenome 3300037264 *Microbiome Permanent Draft Sediment microbial communities from various lakes in Switzerland Sediment microbial communities from Lake Lucerne, Nidwalden, Switzerland - LL_38 DOE Joint Genome Institute (JGI) 3300037264 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mark.lever@usys.ethz.ch Mark Alexander Lever No Environmental Aquatic Lake Freshwater Sediment sediment 46.9968 8.347 1901237826 3178964 688 0 1064 3 SRX8399761 Unrestricted 16.77 Metagenome 3300027251 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1556B-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027251 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2022 -123.941 144028346 312108 184 26 300 41 SRX2753740 Unrestricted 0.0 Metagenome 3300043012 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver small intestine microbial communities from Maple Ridge, British Columbia, Canada - Beaver4Small.Intestine1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043012 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Small intestine Digestive system Unclassified small intestine 49.18 -122.54 82742722 143827 5 3 6 3 SRX8345948 Unrestricted 44.89 Metagenome 3300042671 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A46 University of California, Davis 3300042671 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 215840320 609161 305 6 540 14 0.0 Metagenome 3300038510 *Microbiome Permanent Draft Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China - KO5 v2 Sun Yat-Sen University 3300038510 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy No Yes yuxiaoli92@163.com Xiaoli Yu No Environmental Aquatic Intertidal zone Marine Mangrove sediment mangrove sediment 23.45 116.43 117236431 160447 53 1 94 4 0.0 Metagenome 3300011546 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00592 Weill Cornell Medical College 3300011546 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -74.0 25557639 30930 8 0 17 0 SRX822559 0.0 Metagenome 3300070323 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountains, Colorado, USA - RMNP_045-O-20200701-COMP-DNA1 3300070323 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 34183153 105190 76 6 146 12 0.0 Metagenome 3300008486 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160158126 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008486 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 199989656 289947 179 1 257 3 0.0 Metagenome 3300049065 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - D23_B_BS (version 2) DOE Joint Genome Institute (JGI) 3300049065 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 214014457 478335 421 13 925 16 Unrestricted 0.0 Metagenome 3300025053 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection C3 (SPAdes) DOE Joint Genome Institute (JGI) 3300025053 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.534762 -107.782602 187662623 320564 149 22 252 22 SRX1990962 Unrestricted 0.0 Metagenome 3300037817 *Microbiome Permanent Draft Bacterial communities from sewage treatment works near Birtley, UK Bioelectrochemical system biofilm bacterial communities from sewage treatment works near Birtley, UK - 18 Northumbria University 3300037817 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes martin.spurr@newcastle.ac.uk Martin Spurr No Engineered Bioreactor Unclassified Anaerobic Unclassified wastewater 54.903212 -1.595078 14675603 31809 97 0 146 0 0.0 Metagenome 3300010278 *Microbiome Permanent Draft Animal gut microbial communities from fecal samples from Wisconsin, USA Western lowland gorrila individual fecal microbial communities from Wisconsin, USA - Go1022B metagenome DOE Joint Genome Institute (JGI) 3300010278 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes apneumann2@wisc.edu Anthony Neumann No Host-associated Mammals Large intestine Digestive system Fecal Western lowland gorilla individual fecal 43.78 -88.79 257427463 419924 666 0 1043 0 SRX2505951 Unrestricted 0.0 Metagenome 3300035321 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Seawater microbial communities from Algarve, Portugal - SW02 Euk Molecular Research LP (MR DNA) 3300035321 Metagenome Analysis Metawrap workflow v. 1.0.5 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Environmental Aquatic Oceanic Marine Unclassified seawater 36.979778 -7.989111 3557827 5042 0 1 0 2 0.0 Metagenome 2044078001 *Microbiome Permanent Draft Switchgrass, Maize and Miscanthus rhizosphere microbial communities from University of Illinois Energy Farm, Urbana, IL Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL University of Illinois, Urbana-Champaign 2044078001 Metagenome Analysis Yes No Yes lixz@illinois.edu Xiangzhen Li No Host-associated Plants Rhizosphere Roots Soil Switchgrass, Maize and Miscanthus rhizosphere 40.109 -88.204 39566506 113040 45 0 91 0 0.0 Metagenome 3300024296 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 36D DOE Joint Genome Institute (JGI) 3300024296 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 369677392 838162 300 40 407 79 SRX4459161 Unrestricted 16.58 Metagenome 7000000487 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 160704339 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000487 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 8054541 13895 0 0 0 0 SRX024605, SRX025508, SRX024606, SRX025500 0.0 Metagenome 7000000608 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159713063 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000608 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 67768609 129748 0 0 0 0 0.0 Metagenome 3300006033 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater microbial communities in response to fracking from Pennsylvania, USA - Allegheny Zone_MetaG_DW_15 DOE Joint Genome Institute (JGI) 3300006033 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole watersheds 40.0132 -79.0717 2103752743 5083756 2304 65 3740 117 SRX2745322 Unrestricted 0.0 Metagenome 3300027182 *Microbiome Permanent Draft Rhizosphere and bulk soil microbial communities from Harvard Forest, USA Bulk soil microbial communities from Harvard Forest, USA - 3Bulk_unsorted metaG (SPAdes) DOE Joint Genome Institute (JGI) 3300027182 Metagenome Analysis spades v. 3.11.1 Yes Yes deangelis@microbio.umass.edu Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Bulk soil bulk soil 42.5502 -72.1737 112518851 380534 89 5 174 17 SRX2718034 Unrestricted 0.0 Metagenome 3300014846 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 633_4M Beijing Genomics Institute (BGI) 3300014846 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 52756317 57119 27 2 37 4 ERX491284 0.0 Metagenome 3300011405 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT400_2 DOE Joint Genome Institute (JGI) 3300011405 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9227 -106.9523 202876941 458016 243 28 509 57 SRX3368876 Unrestricted 0.0 Metagenome 3300050352 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 E3 10-14 DOE Joint Genome Institute (JGI) 3300050352 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.0466 619383375 966620 256 5 396 10 Restricted 13.07 Metagenome 3300013833 *Microbiome Permanent Draft Sewage treatment plant microbial communities from Vermont, USA Sewage treatment plant microbial communities from Vermont, USA - CLO_W Norwich University 3300013833 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 27610223 Engineered Wastewater Unclassified Industrial wastewater Unclassified Sewage treatment plant 43.727094 -72.425964 395172049 872086 164 18 316 32 SRX1058430 0.0 Metagenome 3300001299 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - Naphthalene biodegradation metagenome 13C5doseC DOE Joint Genome Institute (JGI) 3300001299 Metagenome Analysis No Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.292222 -73.604444 53328 160 0 0 0 0 Unrestricted 0.0 Metagenome 3300009989 *Microbiome Permanent Draft Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_197 metaG DOE Joint Genome Institute (JGI) 3300009989 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes esinger@lbl.gov; twoyke@lbl.gov Esther Singer; Tanja Woyke No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass associated 30.387 -97.7301 53865446 99949 17 50 18 78 SRX3203285 Unrestricted 0.0 Metagenome 3300002773 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS DOE Joint Genome Institute (JGI) 3300002773 Metagenome Analysis Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.9082 -79.0499 142858212 237732 81 2 155 0 SRX1991084 Unrestricted 0.0 Metagenome 3300049018 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - B25_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049018 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 265350060 575399 368 14 721 30 Unrestricted 0.0 Metagenome 3300041682 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_315 MetaG AgResearch, New Zealand, Mosgeil 3300041682 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1569527149 3368923 376 26 1288 54 0.0 Metagenome 3300022477 *Microbiome Permanent Draft Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain - individual 14 Autonomous University of Barcelona 3300022477 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.38 -0.51 330036 474 4 0 4 0 0.0 Metagenome 3300040767 *Microbiome Finished Marine bacterial communities from Black Sea, Georgia Marine microbial communities from Black Sea, Gonio, Georgia - P24 NCDC Lugar Center, Georgia 3300040767 Metagenome Analysis Denovo v. 3.2 released by JGI data releasing policy No Yes iakusradze@pha.ge Ia Kusradze No Environmental Aquatic Unclassified Marine Unclassified Marine 41.5605 41.5711 563105 819 3 0 3 2 0.0 Metagenome 3300006889 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius crassitunicatus.2 DOE Joint Genome Institute (JGI) 3300006889 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 35580696 98697 30 1 75 3 SRX2706268 Unrestricted 0.0 Metagenome 3300006214 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 246515023 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006214 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 10818915 19595 13 1 27 0 0.0 Metagenome 3300013089 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_330m DOE Joint Genome Institute (JGI) 3300013089 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; shallam@interchange.ubc.ca; jkjarett@lbl.gov Ramunas Stepanauskas; Steven Hallam; Jessica Jarett No Environmental Aquatic Lake Freshwater Unclassified freshwater 50.0621 -124.7214 486957717 1102321 482 2 847 5 SRX3570958 Unrestricted 9.33 Metagenome 3300049786 *Microbiome Permanent Draft Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama - S042_CH5_drought DOE Joint Genome Institute (JGI) 3300049786 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes njbouskill@lbl.gov Nicholas Bouskill No Environmental Terrestrial Tropical forest Soil Bulk soil Soil 9.17936 -79.8296 327765805 848854 239 7 491 12 Unrestricted 7.06 Metagenome 3300000896 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O3 DOE Joint Genome Institute (JGI) 3300000896 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 5066886 16413 147 78 221 127 SRX1986006, SRX2021688, SRX1986007 Unrestricted 0.0 Metagenome 3300057202 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2021-2016 DOE Joint Genome Institute (JGI) 3300057202 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.76265 -83.329 814500329 1569820 491 88 742 154 Unrestricted 16.41 Metagenome 3300056864 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E2L_0_1 DOE Joint Genome Institute (JGI) 3300056864 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9934494 -81.4907807 768737786 1288805 391 20 697 34 Unrestricted 12.79 Metagenome 3300026058 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026058 Metagenome Analysis spades v. 3.11.1 released Yes Yes jzz0026@lbl.gov; sgtringe@lbl.gov Jinglie Zhou; Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.05246563 -121.76914021 64856408 171995 154 1 270 5 SRX7182415 Unrestricted 0.0 Metagenome 3300038750 *Microbiome Permanent Draft Bat skin associated microbial communities from Nashville, Tennessee, USA Bat skin associated microbial communities from Nashville, Tennessee, USA - 1 Middle Tennessee State University 3300038750 Metagenome Analysis SPAdes v. 3.10.1 released by JGI data releasing policy No Yes grisnikmatt@gmail.com Matt Grisnik No Host-associated Mammals Skin Integumentary system Unclassified Bat skin 36.174465 -86.76796 24799176 32902 9 1 13 4 0.0 Metagenome 3300053107 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere DOE Joint Genome Institute (JGI) 3300053107 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121447 -123.2718 396048180 579041 94 121 158 138 Unrestricted 0.0 Metagenome 3300003080 *Microbiome Finished Human fecal viral communities from the Genome Institute of Singapore, of healthy adults Human fecal ecosystem from the Genome Institute of Singapore - Sample 2 3300003080 Metagenome Analysis Made public because these are downloaded from Genbank No Yes ruanyj@gis.a-star.edu.sg Yijun Ruan Yes 16336043 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 32.716586 -117.162455 638810 2613 189 45 385 46 0.0 Metagenome 3300051658 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Sankt Oswald-Riedlhutte, Bavaria, Germany - BW_TH_002D DOE Joint Genome Institute (JGI) 3300051658 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.931069 13.425342 940782474 2301061 457 46 922 72 Unrestricted 8.61 Metagenome 3300017783 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 2 SPOT_SRF_2009-07-10 DOE Joint Genome Institute (JGI) 3300017783 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 601516713 1318773 214 131 323 226 SRX7207069, SRX7207070 Unrestricted 0.0 Metagenome 3300070640 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_042-O-20200706-COMP-DNA1 3300070640 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 119673303 320375 164 17 306 30 0.0 Metagenome 3300046796 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 soil DOE Joint Genome Institute (JGI) 3300046796 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121297 -123.269816 5.35 914465331 1451731 257 17 420 23 Unrestricted 11.99 Metagenome 3300001914 *Microbiome Permanent Draft Bioremediated contaminated groundwater microbial communities from North Railroad Avenue plume (NRAP), New Mexico Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample HSE6-05 DOE Joint Genome Institute (JGI) 3300001914 Metagenome Analysis Yes Yes reiss@nmt.edu, NNIvanova@lbl.gov; rebecca.reiss@nmt.edu Rebecca Reiss, Natalia Ivanova; Rebecca Reiss Yes 27980706 Environmental Aquatic Groundwater Deep subsurface Contaminated Bioremediated contaminated groundwater 35.9918 -106.0796 253345860 461604 264 8 502 9 SRX2554406 Unrestricted 0.0 Metagenome 3300039902 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 085_R1_022417 University of Maryland 3300039902 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.85894444 27.04986111 22356107 45030 51 1 109 2 0.0 Metagenome 3300029375 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 079_4_28_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029375 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 263033478 325877 282 0 389 0 0.0 Metagenome 3300009899 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S14 University of New South Wales 3300009899 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 38625430 67019 14 5 15 10 0.0 Metagenome 3300039444 *Microbiome Permanent Draft Terrestrial soil microbial communities from rice fields in China Terrestrial soil microbial communities from rice field in Sanya, Hainan, China - 36HSY Shanghai Personal Biotechnology Co., Ltd. 3300039444 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes xjzhang68@sjtu.edu.cn Xiaojun Zhang No Environmental Terrestrial Paddy field/soil Soil Unclassified Terrestrial soil 109.38 18.32 3550576074 8656380 1999 97 3787 160 0.0 Metagenome 3300002639 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A5w-12 DOE Joint Genome Institute (JGI) 3300002639 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 1201147 4028 37 1 96 2 SRX1991302 Unrestricted 0.0 Metagenome 3300002166 *Microbiome Permanent Draft Biogas fermentation microbial communities from biogas plants in Germany Biogas fermentation microbial communities from Germany - Plant 4 DNA1 DOE Joint Genome Institute (JGI) 3300002166 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes asczyrba@techfak.uni-bielefeld.de Alexander Sczyrba Yes 27462367 Engineered Bioreactor Digestate Anaerobic Unclassified Biogas fermentantion 52.0385 8.4956 7.8 298985525 542060 518 12 824 20 SRX1598073 Unrestricted 0.0 Metagenome 3300035514 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver small intestine microbial communities from Maple Ridge, British Columbia, Canada - Beaver5Small.Intestine1 DOE Joint Genome Institute (JGI) 3300035514 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Small intestine Digestive system Unclassified small intestine 49.18 -122.54 1986797138 2661869 13 16 40 28 SRX8346253 Unrestricted 6.25 Metagenome 3300013947 *Microbiome Permanent Draft Baboon gut microbial communities from fecal samples in Kenya Baboon gut microbial communities from fecal samples in Kenya - M13 Duke University 3300013947 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Baboon gut 2.717 37.1 147843505 290352 108 2 191 3 SRX834644 0.0 Metagenome 3300061673 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0529 Microbiome Insights 3300061673 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 396201407 542444 72 2 88 4 0.0 Metagenome 3300013316 *Microbiome Permanent Draft Fecal viral communites from wild urban brown rats in Berlin, Germany Fecal viral communites from wild urban brown rats in Berlin, Germany - KS/11/0573 Freie University Berlin 3300013316 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 52.529611 13.401343 1896818 4767 2 0 6 1 SRX616510 0.0 Metagenome 3300053756 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FL_01 DOE Joint Genome Institute (JGI) 3300053756 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.407926 -82.180036 17678040 29182 2 1 4 2 Restricted 650.37 Metagenome 3300028835 *Microbiome Permanent Draft Seawater microbial communities from Yap Trench, western Pacific Ocean Seawater microbial communities from Yap Trench, western Pacific Ocean - 37I-Yap-CTD02-800m 2000bp_Newsun Novogene 3300028835 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes newsun1987@126.com Xinxu Zhang No Environmental Aquatic Ocean trench Marine Unclassified seawater 9.87 138.5 314204768 397442 113 2 135 2 0.0 Metagenome 3300050130 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim2 40-44 DOE Joint Genome Institute (JGI) 3300050130 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.353634 19.04734 763664195 1087792 188 1 248 1 Restricted 12.53 Metagenome 3300006867 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA DOE Joint Genome Institute (JGI) 3300006867 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 741477527 1951573 465 30 846 52 SRX2859722 Unrestricted 0.0 Metagenome 3300006141 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t14_692P_control - viral_metagenome University of Texas Southwestern Medical Center 3300006141 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 124088861 255039 69 0 123 1 0.0 Metagenome 3300040789 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Etang de Berre, Marignane, France - D305 Genopole Toulouse Midi-Pyrenees 3300040789 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.4847 5.188 392317679 625258 268 27 414 48 0.0 Metagenome 3300020599 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched backyard soil microbial communities from Emeryville, California, USA - eDNA 5th pass 37_C BE-Lig BY (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300020599 Metagenome Analysis spades v. 3.10.1 Yes Yes JMGladden@lbl.gov John Gladden No Environmental Terrestrial Unclassified Soil Unclassified soil 37.83 -122.29 340369701 533045 243 9 333 10 SRX4062854, SRX4062853 Unrestricted 0.0 Metagenome 3300003104 *Microbiome Permanent Draft Acid Mine Drainage (AMD) euryarchaeal community from 5-way CG site, at Richmond mine, Iron Mountain, CA Pink biofilm microbial community from flowing acid mine drainage at Richmond mine, Iron Mountain, California, USA DOE Joint Genome Institute (JGI) 3300003104 Metagenome Analysis JAZZ Made public because these are downloaded from Genbank No Yes sgtringe@lbl.gov Susannah Tringe Yes 14961025 Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid Mine Drainage (AMD) 40.678 -122.522 0.83 10756372 13135 6 0 9 0 0.0 Metagenome 3300000745 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 31JUL2007 hypolimnion DOE Joint Genome Institute (JGI) 3300000745 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300019890 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - U1c1 DOE Joint Genome Institute (JGI) 3300019890 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9225 -106.9538 703809578 1290121 263 24 524 45 SRX3958485, SRX3958484 Unrestricted 0.0 Metagenome 2149837006 *Microbiome Permanent Draft Mouse gut microbial communities from the University of California, San Diego, USA MouseMetaGen_Dec15_Ind13_HC9 (5um-filtered) University of California, San Diego 2149837006 Metagenome Analysis SOAP denovo released per JGI data release policy No Yes hchiang@ucsd.edu Hsin-I Chiang No Host-associated Mammals Large intestine Digestive system Cecum Mouse gut 32.42 117.1 72318212 227152 135 3 280 0 0.0 Metagenome 3300012630 *Microbiome Permanent Draft Freshwater microbial communities from rivers and streams along an organic matter gradient associated with agriculture in Ontario, Canada Freshwater microbial communities from North Martin Creek, Ontario, Canada - S23 Molecular Research LP (MR DNA) 3300012630 Metagenome Analysis metaSPAdes released by JGI data releasing policy No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lotic Freshwater Unclassified Freshwater 44.58538 -78.5941 8.01 21412001 54202 9 3 30 5 0.0 Metagenome 3300020301 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000925 (ERX556086-ERR598997) CEA Genoscope 3300020301 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 2.0596 -84.553 141502971 349594 204 8 351 13 0.0 Metagenome 3300029240 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002660-47 Beijing Genomics Institute (BGI) 3300029240 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 190046318 234073 131 0 160 0 0.0 Metagenome 3300039222 *Microbiome Permanent Draft Sediment microbial communities from Muhlbach River near Tubingen, Germany Sediment microbial communities from Muhlbach River near Tubingen, Germany ? MS2a15 CeGaT 3300039222 Metagenome Analysis SPAdes v. 3.11.1 released by JGI data releasing policy Yes Yes zhe.wang@tum.de Zhe Wang No Environmental Aquatic River Freshwater Sediment Sediment 48.519406 8.984299 2003699357 6033127 630 11 1551 23 0.0 Metagenome 3300024955 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 92_HOW11 (SPAdes) DOE Joint Genome Institute (JGI) 3300024955 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 90198852 139987 38 0 49 0 SRX2721167 Unrestricted 0.0 Metagenome 3300060419 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210602_06_05 DOE Joint Genome Institute (JGI) 3300060419 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 847927561 1274565 300 100 418 163 Unrestricted 30.84 Metagenome 3300005730 *Microbiome Permanent Draft Mirobial communities in Biogas reactors Anaerobic microbial community collected from a biogas reactor in Fredrikstad, Norway Norwegian Sequencing Centre (NSC) 3300005730 Metagenome Analysis SOAP released per JGI data release policy No Yes live.hagen@nmbu.no Live Heldal Hagen No Engineered Bioreactor Digestate Anaerobic Unclassified Food waste 59.185359 10.970104 62069582 88912 43 0 46 0 0.0 Metagenome 3300001137 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 DOE Joint Genome Institute (JGI) 3300001137 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 76318645 222978 125 19 238 36 SRX3312707 Unrestricted 0.0 Metagenome 3300018419 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 (version 2) DOE Joint Genome Institute (JGI) 3300018419 Metagenome Analysis MEGAHIT v. 1.0.6 released based on JGI ITS Yes Yes cpan@ou.edu Chongle Pan No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 9.1086 -79.8436 2921882731 6645933 1206 34 2141 63 SRX5010645, SRX5010646, SRX5010643, SRX5010644, SRX5010641, SRX5010642 Unrestricted 0.0 Metagenome 3300013564 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100149 University of Pennsylvania 3300013564 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 2135088 4011 1 0 4 2 SRX756383 0.0 Metagenome 3300035366 *Microbiome Permanent Draft Fecal microbial communities from lean and fat line chickens in Harbin, China Fecal microbial communities from Lean line chicken in Harbin, China - MGJ28 Inner Mongolia Agricultural University 3300035366 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Birds Large intestine Digestive system Fecal Fecal 45.73 126.73 19215572 29662 26 2 39 1 SRX2066132 0.0 Metagenome 3300014127 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Venezuela to Iowa, USA - V2 Iowa State University 3300014127 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 10838065 21899 0 3 0 2 SRX1150309 0.0 Metagenome 3300004244 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 130_HOW14 DOE Joint Genome Institute (JGI) 3300004244 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 46660702 77640 39 0 85 0 SRX2723971 Unrestricted 0.0 Metagenome 3300044815 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_39CS DOE Joint Genome Institute (JGI) 3300044815 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.5132 -106.0526 851287500 1436973 304 38 539 46 SRX20649831 Unrestricted 15.67 Metagenome 3300003788 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_2/2/2009_ DNA DOE Joint Genome Institute (JGI) 3300003788 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 162602251 309817 183 16 252 18 SRX2713537 Unrestricted 0.0 Metagenome 3300055538 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.17W.14 SIP fraction DOE Joint Genome Institute (JGI) 3300055538 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 294867062 508137 92 45 163 65 Unrestricted 12.5 Metagenome 3300027853 *Microbiome Permanent Draft Soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, under manipulated climate change conditions. Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027853 Metagenome Analysis spades v. 3.11.1 Yes Yes jmtalbot@bu.edu; ptempler@bu.edu Jennifer Bhatnagar; Pamela Templer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 1355369122 3053762 445 33 807 73 SRX2838776 Unrestricted 0.0 Metagenome 3300042162 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Marine sediment microbial communities from Algarve, Portugal - SD01 v2 Molecular Research LP (MR DNA) 3300042162 Metagenome Analysis Metawrap workflow v. 1.0.8 released by JGI data releasing policy Yes Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Environmental Aquatic Oceanic Marine Sediment marine sediment 36.979778 -7.989111 643965 869 3 3 7 2 0.0 Metagenome 3300049434 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_24BS DOE Joint Genome Institute (JGI) 3300049434 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.3724 -106.103 1250244893 2060994 489 47 764 70 SRX20650029 Unrestricted 0.0 Metagenome 3300006792 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL1-D DOE Joint Genome Institute (JGI) 3300006792 Metagenome Analysis MEGAHIT v. 0.1.3 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.299 -156.61 449806005 900033 451 18 705 37 SRX2916185 Unrestricted 0.0 Metagenome 3300035017 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Timaviella radians GSE-UNK-7R and co-occurring heterotrophs from rock surface from Grand Staircase Escalante National Monument, Utah, United States - 20181204_57 DOE Joint Genome Institute (JGI) 3300035017 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Rock surface 37.8291 -111.4201 65679130 70574 17 0 20 0 SRX8239125 Unrestricted 197.75 Metagenome 3300008410 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Sea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC5T Shell Corporation 3300008410 Metagenome Analysis idba_ud Released on PI's request No Yes ebalsop@lbl.gov, nicolas.tsesmetzis@shell.com Eric Alsop, Nicolas Tsesmetzis No Environmental Aquatic Cold seeps Marine Sediment Sediment 27.4 -93.2 270318699 1064509 347 6 660 14 0.0 Metagenome 3300012506 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.old.040610 DOE Joint Genome Institute (JGI) 3300012506 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 141800518 383657 336 26 725 53 SRX3527423 Unrestricted 0.0 Metagenome 3300026750 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-B (SPAdes) DOE Joint Genome Institute (JGI) 3300026750 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 25020314 76560 77 1 143 8 SRX2575243 Unrestricted 0.0 Metagenome 3300045164 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_7_B DOE Joint Genome Institute (JGI) 3300045164 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 210899153 242775 125 1 158 1 Unrestricted 92.39 Metagenome 3300011432 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT718_2 DOE Joint Genome Institute (JGI) 3300011432 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8896 -106.9079 445461272 976689 360 33 712 49 SRX3539185 Unrestricted 0.0 Metagenome 3300070435 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_002-M-20190729-COMP-DNA1 3300070435 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 9973012 31365 46 12 57 29 0.0 Metagenome 3300041568 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_15 MetaG AgResearch, New Zealand, Mosgeil 3300041568 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 3206211403 6354818 303 40 1509 51 0.0 Metagenome 3300042480 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME01Aug2018-rr0711 DOE Joint Genome Institute (JGI) 3300042480 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 946252173 1464925 363 45 529 73 Unrestricted 14.99 Metagenome 3300038586 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Indian Ocean - LIB2 Michigan State University 3300038586 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 26.487651 50.196121 32900803 89963 12 1 19 0 0.0 Metagenome 3300060605 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210601_05_01 DOE Joint Genome Institute (JGI) 3300060605 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 628699953 976801 276 100 357 136 Unrestricted 24.62 Metagenome 3300004111 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_200m_DNA DOE Joint Genome Institute (JGI) 3300004111 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 598605589 1355052 719 4 1183 6 Unrestricted 0.0 Metagenome 3300022800 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R11 Version 2 University of New South Wales 3300022800 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 103818056 173240 73 1 94 2 0.0 Metagenome 3300036835 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_July_plot1_rep3 DOE Joint Genome Institute (JGI) 3300036835 Metagenome Analysis metaspades v. 3.13.0 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6539 -80.6288 2467181010 3761489 545 8 867 16 SRX8179574 Unrestricted 17.94 Metagenome 3300039308 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Trichotorquatus andrei WJT9-NPBG15 and co-occurring heterotrophs from desert soil from Mojave Desert, CA, United States - 20190806_62D DOE Joint Genome Institute (JGI) 3300039308 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Desert Soil Unclassified Desert soil 33.8761 -115.9097 102497699 131548 40 0 56 0 SRX9640319 Unrestricted 82.34 Metagenome 3300065619 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 806 in Chinook, Alberta, Canada - S00JY_0040 Microbiome Insights 3300065619 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.26457862 -110.5952179 245435559 355396 58 0 96 1 0.0 Metagenome 3300009782 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC048_MetaG DOE Joint Genome Institute (JGI) 3300009782 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu; twoyke@lbl.gov Wen-Tso Liu; Masaru Nobu; Tanja Woyke No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 41.12 -87.64 1251786483 2330930 942 17 1480 19 SRX2165335 Unrestricted 0.0 Metagenome 3300001686 *Microbiome Permanent Draft Soil microbial communities from Mediterranean grasslands, California Grasslands soil microbial communities from Hopland, California, USA DOE Joint Genome Institute (JGI) 3300001686 Metagenome Analysis Yes Yes elbrodie@lbl.gov, ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 38.99297339 -123.0674491 2209171209 5305512 3347 388 6386 687 SRX1978726, SRX1978725, SRX1978736, SRX1978728, SRX1978727, SRX1978729, SRX1978731, SRX1978730, SRX1978733, SRX1978732, SRX1978735, SRX1978724, SRX2041382, SRX1978734 Unrestricted 0.0 Metagenome 3300012445 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100220 University of Pennsylvania 3300012445 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8342835 21150 26 1 42 1 SRX756681 0.0 Metagenome 3300000910 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Section #4 DOE Joint Genome Institute (JGI) 3300000910 Metagenome Analysis Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.973481 -119.476345 45710754 94932 74 6 123 8 SRX3311905 Unrestricted 0.0 Metagenome 3300069416 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_053-M-20170621-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069416 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 20722111 64104 109 18 173 30 0.0 Metagenome 3300013231 *Microbiome Permanent Draft Marine hypoxic microbial communities from the Gulf of Mexico, USA Marine hypoxic microbial communities from the Gulf of Mexico, USA - 5m_Station5_GOM_Metagenome Georgia Institute of Technology 3300013231 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 162733005 384481 158 11 247 8 SRX958347 0.0 Metagenome 3300021397 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2016_1, 0.2 Toyama Prefectural University 3300021397 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Unclassified marine 36.96723 137.36471 93890185 221142 37 3 56 4 0.0 Metagenome 3300003389 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A3-12 DOE Joint Genome Institute (JGI) 3300003389 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 84072 285 11 3 23 6 SRX2576256 Unrestricted 0.0 Metagenome 3300071060 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_031-M-20190104-COMP-DNA1 3300071060 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 108446319 305325 154 9 282 20 0.0 Metagenome 3300043345 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 148-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043345 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9872 -107.003 488227286 1391482 537 46 1028 65 Unrestricted 7.05 Metagenome 3300002121 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 DOE Joint Genome Institute (JGI) 3300002121 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 440512048 1190624 761 3 1403 13 SRX1990945 Unrestricted 0.0 Metagenome 3300015338 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_20JUN2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015338 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 224942742 375121 13 90 13 176 SRX3923113 Unrestricted 7.63 Metagenome 3300044250 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 135-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044250 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9368 -107.0126 427019595 1016123 342 27 585 51 Unrestricted 8.3 Metagenome 3300047479 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Cobb Mill Creek, Oyster, Virginia, USA - cobbmillcreek_2019_sw_WHONDRS-S19S_0090 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047479 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 37.2913 -75.9308 44265405 88411 117 24 223 32 Unrestricted 0.0 Metagenome 3300028802 *Microbiome Permanent Draft Soil and ectomycorrhiza microbial communities from Populus trichocarpa stands in riparian zones in the Pacific Northwest, United States Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S DOE Joint Genome Institute (JGI) 3300028802 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Environmental Terrestrial Riparian zone Soil Trees stand soil 46.6992 -120.899 2087040784 5663712 1035 72 1930 121 SRX5650591 Unrestricted 8.51 Metagenome 3300070589 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_043-M-20190716-COMP-DNA1 Battelle Memorial Institute 3300070589 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.131002 -99.242763 6.76-7.68 21341873 63268 64 2 148 4 0.0 Metagenome 3300013380 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100221 University of Pennsylvania 3300013380 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 35148926 79375 29 1 56 1 SRX756680 0.0 Metagenome 3300044461 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_194 DOE Joint Genome Institute (JGI) 3300044461 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 598422872 1511921 581 13 1000 23 Unrestricted 7.23 Metagenome 3300026510 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in the Atlantic and Pacific Ocean Hydrothermal vent microbial communities from Mid Atlantic Ridge, Atlantic Ocean - 355-202 DOE Joint Genome Institute (JGI) 3300026510 Metagenome Analysis spades v. 3.11.1 Yes Yes pgirguis@oeb.harvard.edu Peter Girguis No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent 36.2294 -33.9028 358573039 562563 262 2 357 2 SRX4801606 Unrestricted 41.96 Metagenome 3300000614 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 21JUL2009 hypolimnion DOE Joint Genome Institute (JGI) 3300000614 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu, tmcmahon@engr.wisc.edu; rrmalmstrom@lbl.gov Katherine McMahon, Katherine McMahon; Rex Malmstrom Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300030706 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2) (version 2) DOE Joint Genome Institute (JGI) 3300030706 Metagenome Analysis spades v. 3.12.0 Yes Yes loy@microbial-ecology.net; Michael.Pester@dsmz.de Alexander Loy; Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.1318 11.881 777300987 1525635 223 4 332 4 Unrestricted 0.0 Metagenome 3300047541 *Microbiome Permanent Draft Floating fern leaf microbial communities from various locations Floating fern leaf microbial communities from East Berbice-Corentyne, Guyana - 3523_IRRI DOE Joint Genome Institute (JGI) 3300047541 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dave.armitage@gmail.com David Armitage No Host-associated Plants Phylloplane/Leaf Phyllosphere Endophytes Leaf 6.2808 -57.381 46237684 51267 14 7 19 7 Unrestricted 443.96 Metagenome 3300043270 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from California, United States - Upper Travertine Spring (UTS_S3) (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043270 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Warm (34-42C) Thermal springs Unclassified Desert spring 36.4428 -116.8278 7.4 321718681 486769 162 4 275 10 SRX9167740 Unrestricted 64.05 Metagenome 3300039709 *Microbiome Permanent Draft Glacier soil microbial communities from Mackay Glacier, Antarctica Glacier soil microbial communities from Mackay Glacier, Antarctica - MG3-2 University of Pretoria 3300039709 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Terrestrial Glacier Soil Unclassified Glacier soil -76.783 161.448 49793534 87554 14 3 18 3 0.0 Metagenome 3300002412 *Microbiome Permanent Draft Phenol degrading bioreactor microbial communities from Hong Kong Phenol degrading bioreactor microbial communities from Hong Kong - Candiate division OP8 Beijing Genomics Institute (BGI) 3300002412 Metagenome Analysis released per JGI data release policy No Yes richieju520@gmail.com Feng Ju No Engineered Bioreactor Unclassified Wastewater Unclassified Phenol degrading bioreactor 2005137 1907 3 0 0 0 0.0 Metagenome 3300070567 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_043-O-20190806-COMP-DNA1 Battelle Memorial Institute 3300070567 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 68.665514 -149.375519 4.88-5.29 15648580 45110 43 5 79 8 0.0 Metagenome 3300009544 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean- Svalbard ARC20M Metagenome DOE Joint Genome Institute (JGI) 3300009544 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 78.8697 8.1122 3081152087 5466259 812 1096 979 1704 SRX2997722 Unrestricted 0.0 Metagenome 3300007838 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 765013792 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007838 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2674783 3302 1 0 4 0 0.0 Metagenome 3300003367 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 DOE Joint Genome Institute (JGI) 3300003367 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 51.62 -128.09 68930145 188209 170 40 318 82 SRX2575204 Unrestricted 0.0 Metagenome 3300012117 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Georgia, USA - TSGA065 MetaG DOE Joint Genome Institute (JGI) 3300012117 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 32.8827 -81.9512 104624190 191096 77 73 120 140 SRX3539708 Unrestricted 0.0 Metagenome 3300042825 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_118 NMDC pilot DOE Joint Genome Institute (JGI) 3300042825 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92039953 -106.94828697 530530801 1513082 473 18 903 30 SRX5354616 0.0 Metagenome 3300010294 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 2 OAHU.JWI-42 metaG DOE Joint Genome Institute (JGI) 3300010294 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms 21.4686 -157.8184 791679798 1103466 9 14 17 33 Unrestricted 0.0 Metagenome 3300008734 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765013792 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008734 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 182370566 236308 144 0 168 0 0.0 Metagenome 3300040982 *Microbiome Permanent Draft Microbial communities from Yellowstone National Park hot springs 2017 Hot spring sediment microbial communities from Empress Pool OF2, Yellowstone National Park, USA - 170630C University of Minnesota Genomics Center 3300040982 Metagenome Analysis SPAdes v. 3.11.0 released by JGI data releasing policy Yes Yes trinityh@umn.edu Trinity Hamilton No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.68766597 -110.72792316 291888643 632804 162 3 350 10 0.0 Metagenome 3300031886 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 3416 DOE Joint Genome Institute (JGI) 3300031886 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Coastal Marine Unclassified seawater 36.7468 -122.0193 1559714317 3663437 1044 229 1761 423 SRX6423004 Unrestricted 17.15 Metagenome 3300048868 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD23 DOE Joint Genome Institute (JGI) 3300048868 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.347657 -119.2808 142218715 172148 13 10 15 16 Unrestricted 199.49 Metagenome 3300017666 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - K13-06 University of Michigan 3300017666 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.52346 -83.666 33086980 37359 11 0 17 0 0.0 Metagenome 3300028667 *Microbiome Permanent Draft Sewage microbial communities from Oakland, California, United States Sewage microbial communities from Oakland, California, United States - Biofuel 11 (PacBio Assembly) DOE Joint Genome Institute (JGI) 3300028667 Metagenome Analysis HGAP4 v. SMRT Link 5.1.0.26412 Yes Yes hrbeller@lbl.gov Harry Beller No Engineered Wastewater Unclassified Sewage Unclassified sewage 37.82 -122.29 60756028 69840 49 0 49 0 SRX8667837, SRX8667836 Unrestricted 504.56 Metagenome 3300025047 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-42 (SPAdes) DOE Joint Genome Institute (JGI) 3300025047 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 49.9996 -144.9998 88730720 161668 39 3 44 4 Unrestricted 0.0 Metagenome 3300069594 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, Pacific Southwest, CA, USA - SJER_047-M-20170315-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069594 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.10878 -119.73228 35344980 95361 189 27 346 45 0.0 Metagenome 3300006635 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-three DOE Joint Genome Institute (JGI) 3300006635 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.299 -156.61 84044969 305389 85 11 240 12 SRX2901418 Unrestricted 0.0 Metagenome 3300028955 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 504_4M Beijing Genomics Institute (BGI) 3300028955 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 32759734 41743 28 0 33 0 ERX491152 0.0 Metagenome 3300008303 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 765094712 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008303 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 2393361 5670 11 1 19 3 SRX024977, SRX098557 0.0 Metagenome 3300043329 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-283 Genome Quebec 3300043329 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.771639 -102.458806 1317908049 3097463 252 61 430 260 0.0 Metagenome 3300025655 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes) (version 4) DOE Joint Genome Institute (JGI) 3300025655 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 37.0516 -76.083 345844493 809256 0 0 0 0 SRX2753472 Unrestricted 0.0 Metagenome 3300049663 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought DOE Joint Genome Institute (JGI) 3300049663 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 250628178 541236 388 26 778 33 Unrestricted 12.14 Metagenome 2035265002 *Microbiome Permanent Draft Agrotis sp. gut microbial communities from Texas A&M University, USA Agrotis sp. gut microbial communities from Texas A and M University, USA Texas A and M University 2035265002 Metagenome Analysis Velvet Released on PI's request No Yes wshi@ag.tamu.edu Gray Weibing Shi No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Agrotis sp. gut 30.6185 -96.3386 12641191 24455 93 0 129 0 0.0 Metagenome 3300042181 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Leptogorgia sarmentosa from Algarve, Portugal - LS06H v2 Molecular Research LP (MR DNA) 3300042181 Metagenome Analysis Metawrap workflow v. 1.0.8 released by JGI data releasing policy Yes Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 60553530 66151 7 1 8 4 0.0 Metagenome 3300007130 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila falleni male 4 gut Cornell University 3300007130 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy Yes Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila falleni male adult gut 43.025606 -77.572811 107821865 272399 45 21 80 22 0.0 Metagenome 3300048815 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 P3 1-5 DOE Joint Genome Institute (JGI) 3300048815 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3535 19.0473 710449290 1042206 167 18 257 31 Restricted 12.08 Metagenome 3300025967 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailC_D2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025967 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.107536 -121.649704 129631763 299961 292 5 438 9 SRX7144830 Unrestricted 0.0 Metagenome 3300027126 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepC_8d DOE Joint Genome Institute (JGI) 3300027126 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 118069690 224514 120 23 185 27 SRX5245212 Unrestricted 13.32 Metagenome 3300008111 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA University of Michigan 3300008111 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.8271 -83.1945 9.128 474671001 816642 367 105 598 157 0.0 Metagenome 3300020455 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000965 (ERX555917-ERR599081) CEA Genoscope 3300020455 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -12.9226 -96.0932 1205993757 2929569 564 50 1062 101 0.0 Metagenome 3300039072 *Microbiome Permanent Draft Freshwater lake viral communities from Lake Michigan, near Chicago, USA Freshwater lake viral communities from Lake Michigan, near Chicago, USA- Montrose140722.1V Genewiz Inc., Loyola University 3300039072 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.9668 -87.637 31920500 67115 22 0 31 0 0.0 Metagenome 3300042849 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198 NMDC pilot DOE Joint Genome Institute (JGI) 3300042849 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040586 -106.94868265 771538628 1963277 499 21 944 33 SRX5355398 0.0 Metagenome 3300014605 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01359 Weill Cornell Medical College 3300014605 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.83 -73.84 25935702 39329 17 0 24 0 SRX823299 0.0 Metagenome 3300064919 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 728 in Hairy hill, Alberta, Canada - S00JY_0642 Microbiome Insights 3300064919 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.4621528 -112.0407692 215226893 303271 90 2 124 7 0.0 Metagenome 3300025989 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_303 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025989 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 78844665 215535 150 7 273 7 SRX2564678, SRX2581040 Unrestricted 0.0 Metagenome 3300000922 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 E3 (3) DOE Joint Genome Institute (JGI) 3300000922 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 57422630 106626 67 0 98 0 SRX3311651 Unrestricted 0.0 Metagenome 3300045254 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_2_C DOE Joint Genome Institute (JGI) 3300045254 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 156065721 184037 97 2 103 4 Unrestricted 138.21 Metagenome 3300027672 *Microbiome Permanent Draft Marine microbial communities from the West Antarctic Peninsula, for metatranscriptomic analysis Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027672 Metagenome Analysis spades v. 3.11.1 Yes Yes mattcott@udel.edu Matthew T. Cottrell No Environmental Aquatic Coastal Marine Unclassified Marine -64.8156 -64.0406 487753708 976356 122 9 264 19 SRX2848090 Unrestricted 0.0 Metagenome 3300009053 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015 DOE Joint Genome Institute (JGI) 3300009053 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wilkins.231@osu.edu, mike.wilkins@colostate.edu Michael Wilkins No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0991 -99.1044 1149032221 2211193 790 3 1387 10 SRX2753776 Unrestricted 0.0 Metagenome 3300009761 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Canada - AD_UKC129_MetaG DOE Joint Genome Institute (JGI) 3300009761 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 49.25 -123.1 409341632 782911 721 6 1017 9 SRX2157914 Unrestricted 0.0 Metagenome 3300042252 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D326_2 DOE Joint Genome Institute (JGI) 3300042252 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 192469966 274593 174 5 206 6 Unrestricted 71.37 Metagenome 3300000202 *Microbiome Draft Feedstock adapted compost microbial communities from Newby Island compost facility, Milpitas CA Feedstock adapted compost microbial communities from Newby Island compost facility, Milpitas, CA, USA - Passage 4_MCC DOE Joint Genome Institute (JGI) 3300000202 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Solid waste Composting Feedstock Unclassified Feedstock adapted compost 37.454581 -121.928712 43993739 67703 57 0 78 0 Unrestricted 0.0 Metagenome 3300043728 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - FT_A001 DOE Joint Genome Institute (JGI) 3300043728 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.1405 -62.9 722179384 1965218 449 4 852 11 Unrestricted 8.38 Metagenome 3300013953 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01152 Weill Cornell Medical College 3300013953 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.9 11035212 14882 8 0 15 0 SRX823107 0.0 Metagenome 3300026522 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_03 DOE Joint Genome Institute (JGI) 3300026522 Metagenome Analysis spades v. 3.11.1 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen 49.6935 -112.8418 539890075 762433 677 3 906 3 SRX4804156 Unrestricted 114.2 Metagenome 3300007352 *Microbiome Permanent Draft Sanford Underground Research Facility - Deep subsurface aquifer microbial community from Lead, South Dakota Deep subsurface aquifer microbial community from Lead, South Dakota (DUSEL-D aquifer) National Aeronautics and Space Administration (NASA) 3300007352 Metagenome Analysis IDBA-UD 1.1.1 Released per PI -- the result has been published. No Yes momper@usc.edu Lily Momper No Environmental Terrestrial Aquifer Deep subsurface Unclassified Deep subsurface aquifer 44.03416667 -103.76583333 7.4 1500 513212813 815222 404 4 561 7 0.0 Metagenome 3300029038 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 332_M Beijing Genomics Institute (BGI) 3300029038 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 105627777 134844 83 0 140 1 ERX491082 0.0 Metagenome 3300014973 *Microbiome Permanent Draft Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0116 : 2 days incubation Battelle Memorial Institute, Gulf Coast Restoration Organization 3300014973 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Marine 63.43 10.43 128022059 252293 62 7 122 9 0.0 Metagenome 3300031996 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2 DOE Joint Genome Institute (JGI) 3300031996 Metagenome Analysis spades v. 3.12.0 Yes Yes icelab@berkeley.edu Steven Lindow No Environmental Terrestrial Agricultural land Soil Unclassified soil 37.8864 -122.2981 5207184494 12244267 2581 149 4267 268 SRX6411939 Unrestricted 7.84 Metagenome 7000000399 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 159247771 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000399 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 1619100 1619 0 0 0 0 0.0 Metagenome 3300027390 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A1-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300027390 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 21829642 67794 66 1 128 1 SRX1990522 Unrestricted 0.0 Metagenome 3300013741 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00422 Weill Cornell Medical College 3300013741 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.94 69281273 118528 24 0 45 0 SRX822391 0.0 Metagenome 7000000501 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764487809 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000501 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 33564287 68465 0 0 0 0 0.0 Metagenome 3300005596 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF43B DOE Joint Genome Institute (JGI) 3300005596 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 705109593 1906700 536 302 868 430 SRX2781861 Unrestricted 0.0 Metagenome 3300012429 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100251 University of Pennsylvania 3300012429 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4689485 13104 16 0 22 0 SRX756650 0.0 Metagenome 3300049722 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 E2 20-24 DOE Joint Genome Institute (JGI) 3300049722 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3534 19.0467 431711581 699717 240 3 377 2 Restricted 13.21 Metagenome 3300012854 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched mosquito-associated microbial communities from UW Madison campus, WI, USA - HID1973M_E1 MG DOE Joint Genome Institute (JGI) 3300012854 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 118744556 186388 134 0 177 0 SRX3564629 Unrestricted 0.0 Metagenome 3300011351 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100712 University of Pennsylvania 3300011351 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4700597 7273 7 3 11 6 SRX756138 0.0 Metagenome 3300011724 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00139 Weill Cornell Medical College 3300011724 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.92 34408422 51269 18 0 25 1 SRX822123 0.0 Metagenome 3300040961 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P7_D2 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300040961 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 1274608139 1971949 353 45 500 52 SRX9635083, SRX9635084 Unrestricted 0.0 Metagenome 3300002420 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP01-I2 3300002420 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300021502 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-4-5_MG DOE Joint Genome Institute (JGI) 3300021502 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.0114 -110.5931 163783968 347638 143 2 234 0 SRX3982109 Unrestricted 21.38 Metagenome 3300022436 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1OPP3 JM81 AGRF 3300022436 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 75868748 122969 50 0 60 0 0.0 Metagenome 3300023032 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C0 DOE Joint Genome Institute (JGI) 3300023032 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Elk feces 38.04 -122.5 68589688 169593 426 0 800 0 SRX4415373 Unrestricted 7.68 Metagenome 3300025899 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025899 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 2078720976 5204555 1025 69 1998 131 SRX2832449 Unrestricted 0.0 Metagenome 3300005375 *Microbiome Permanent Draft Olavius algarvensis microbial communities from Capo di Sant'Andrea bay, Elba, Italy Olavius algarvensis microbial communities from Capo di Sant'Andrea bay, Elba, Italy - Delta4 DOE Joint Genome Institute (JGI), Max Planck Institute 3300005375 Metagenome Analysis Jazz No Yes ndubilie@mpi-bremen.de Nicole Dubilier Yes 16980956 Host-associated Annelida Unclassified Integument Unclassified Olavius algarvensis 42.807222 10.141111 6382157 3392 1 0 1 0 0.0 Metagenome 3300015249 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT293A_16_10D DOE Joint Genome Institute (JGI) 3300015249 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9228 -106.9508 144878057 368182 325 7 725 22 SRX3780469 Unrestricted 4.74 Metagenome 3300044509 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Leaf microbial communities from farm grass in Deerfield, Massachusetts, United States - Orchardgrass_Phyllosphere_Control3 DOE Joint Genome Institute (JGI) 3300044509 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 42.4788 -72.5788 879431298 1617564 200 179 339 288 Unrestricted 21.46 Metagenome 2013515001 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - YNP8 OSP Spring v1 DOE Joint Genome Institute (JGI) 2013515001 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23720654 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.733519 -110.7 3.3 21158971 31788 0 0 0 0 Unrestricted 0.0 Metagenome 3300055096 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_4-s115 day 365 DOE Joint Genome Institute (JGI) 3300055096 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1057366365 1583702 341 158 458 161 Unrestricted 32.57 Metagenome 3300043020 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver proximal colon microbial communities from Maple Ridge, British Columbia, Canada - Beaver5Prox.Colon1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043020 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Proximal colon proximal colon 49.18 -122.54 96099725 210112 263 9 479 20 SRX8346448 Unrestricted 71.93 Metagenome 3300014632 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00397 Weill Cornell Medical College 3300014632 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.7 -73.95 18668600 30164 20 0 25 0 SRX822368 0.0 Metagenome 3300038522 *Microbiome Permanent Draft Organic and conventional farm associated microbial communities from Canada and USA Wastewater microbial communities from conventional feedlot in Alberta, Canada - WW127 Colorado State University 3300038522 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 50.34 -113.77 60686665 119097 119 0 188 0 0.0 Metagenome 3300028540 *Microbiome Permanent Draft Endolithic Cyanobacteria Culture Enrichments Cultured Halite endolithic microbial community from Solar Grande, Atacama Desert, Chile - H-SG-1 Johns Hopkins Bayview Research CORES 3300028540 Metagenome Analysis metaSPAdes v. 3.10, metawrap v. 0.5 released by JGI data releasing policy No Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified halite -23.6784 -70.4036 6650825 6594 1 0 1 0 0.0 Metagenome 3300007958 *Microbiome Permanent Draft Microbial communities from Columbia River Estuary, Oregon, USA Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459BC_3.0um Oregon State University 3300007958 Metagenome Analysis megahit released per JGI data release policy Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Coastal Marine Unclassified estuary water 46.2335 -123.9142 87932969 163340 110 174 182 282 0.0 Metagenome 3300007617 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1554B-02 DOE Joint Genome Institute (JGI) 3300007617 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2871 -123.9424 360856317 692266 312 13 500 27 SRX2753731 Unrestricted 0.0 Metagenome 3300021467 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-7-8_MG DOE Joint Genome Institute (JGI) 3300021467 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.0114 -110.5956 378956998 775933 452 5 695 8 Unrestricted 16.21 Metagenome 3300046454 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere DOE Joint Genome Institute (JGI) 3300046454 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1215 -123.2696 1170596245 1868452 322 68 507 92 Unrestricted 12.2 Metagenome 3300001622 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF018 DOE Joint Genome Institute (JGI) 3300001622 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 6025796 19029 19 3 33 9 SRX2014341 Unrestricted 0.0 Metagenome 3300046829 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 soil DOE Joint Genome Institute (JGI) 3300046829 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.1214 -123.26946 4.88 884000143 1401298 277 19 430 33 Unrestricted 13.34 Metagenome 3300030031 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P106V6 Beijing Genomics Institute (BGI) 3300030031 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 131637399 159045 100 0 144 0 0.0 Metagenome 3300029730 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36666 Beijing Genomics Institute (BGI) 3300029730 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 161501663 206562 147 0 232 1 0.0 Metagenome 3300032175 *Microbiome Permanent Draft Microbial communities from the deep biosphere Marine subsurface sediment microbial communities from Costa Rica - 1378_B11H3_93p98mbsf re-assembly Marine Biological Laboratory 3300032175 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Coastal Marine Sediment Marine subsurface sediment 8.59234667 -84.07735833 56266030 152238 44 0 98 1 SRX740708 0.0 Metagenome 3300069252 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Yellowstone NP, Wyoming, USA - YELL_005-M-20210708-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069252 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 44.948383 -110.631377 1634258714 4307086 1410 67 2849 123 0.0 Metagenome 3300000235 *Microbiome Draft Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- PC08_3 DOE Joint Genome Institute (JGI) 3300000235 Metagenome Analysis released based on JGI ITS Yes Yes jlm80@psu.edu Jennifer Macalady Yes 25620962 Environmental Aquatic Groundwater Freshwater Cave water Groundwater 43.383333 12.95 252007248 513563 227 6 371 16 Unrestricted 0.0 Metagenome 3300018003 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40 DOE Joint Genome Institute (JGI) 3300018003 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 566826595 992800 261 1 468 4 SRX3960235 Unrestricted 22.67 Metagenome 3300021489 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-8-9_MG DOE Joint Genome Institute (JGI) 3300021489 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.0114 -110.5956 121323270 263884 153 2 237 2 SRX3982279 Unrestricted 15.75 Metagenome 3300003497 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN DOE Joint Genome Institute (JGI) 3300003497 Metagenome Analysis Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 332507767 753231 315 48 514 55 Unrestricted 0.0 Metagenome 3300032083 *Microbiome Finished The variation of viral communities during algal boom from the coastal of Qingdao, China Marine viral communities from the Yellow sea, Qingdao, China - XG0712 Beijing Novogene Bioinformatics Technology Co., Ltd 3300032083 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes foodyqw_12@163.com Yang Qingwei No Environmental Aquatic Coastal Marine Unclassified marine 36.0767 120.3087 380188339 643238 91 3 138 6 0.0 Metagenome 3300000729 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35 DOE Joint Genome Institute (JGI) 3300000729 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 36195402 103689 82 0 126 1 SRX4340826 Unrestricted 0.0 Metagenome 3300025782 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE05Oct08 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025782 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 125632549 254962 62 30 83 43 SRX2565222 Unrestricted 0.0 Metagenome 3300059713 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1568-02 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059713 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2861 -123.7318 275914620 587221 152 10 234 16 SRX2753759 Unrestricted 0.0 Metagenome 3300045592 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_CSTR_146 DOE Joint Genome Institute (JGI) 3300045592 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes nwfortney@gmail.com; dnoguera@wisc.edu Nathaniel Fortney; Daniel Noguera No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 125741734 183679 120 1 188 3 SRX12655903 Unrestricted 95.12 Metagenome 3300047356 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_180530.NP2 DOE Joint Genome Institute (JGI) 3300047356 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 607846468 1169766 341 106 522 176 Unrestricted 11.9 Metagenome 3300041809 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - A_35_wk_4 DOE Joint Genome Institute (JGI) 3300041809 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9785 -106.974 122279438 397302 258 13 468 18 SRX14808527 Unrestricted 6.32 Metagenome 3300042594 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Coatitermes kartaboensis from Petit Saut, French Guiana, France - Coa324 Eurofins MWG Operon 3300042594 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 5.071383 -53.039049 733764584 814468 124 11 199 9 0.0 Metagenome 3300022784 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S10 Version 2 University of New South Wales 3300022784 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 35065252 61875 17 2 21 4 0.0 Metagenome 3300017621 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - L111-01 University of Michigan 3300017621 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.68059 -84.4831 11610802 15914 3 0 4 0 0.0 Metagenome 3300024179 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK36 DOE Joint Genome Institute (JGI) 3300024179 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 171198482 427836 237 20 425 43 SRX4547598 Unrestricted 8.28 Metagenome 3300039855 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_002-M-20130701-COMP-DNA1 Argonne National Laboratory 3300039855 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 25995026 59075 38 6 70 6 ERX2133930 0.0 Metagenome 3300013192 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100462 University of Pennsylvania 3300013192 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 37259382 78405 27 0 45 0 SRX756536 0.0 Metagenome 3300047648 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BT-preinc-03redo (version 2) DOE Joint Genome Institute (JGI) 3300047648 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3555 19.0492 220404961 399656 137 16 270 27 Restricted 0.0 Metagenome 3300046530 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere DOE Joint Genome Institute (JGI) 3300046530 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5882 -123.194 603228186 925550 233 27 378 41 Unrestricted 36.4 Metagenome 3300027161 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF032 (SPAdes) DOE Joint Genome Institute (JGI) 3300027161 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 34439701 101447 54 6 95 5 SRX2014381 Unrestricted 0.0 Metagenome 3300027847 *Microbiome Permanent Draft Marine microbial communities from western Arctic Ocean Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027847 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh Yes 30271971 Environmental Aquatic Oceanic Marine Unclassified Marine 77.0991 -150.2252 1484106589 2882814 733 104 1123 203 SRX2997311 Unrestricted 0.0 Metagenome 3300001176 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2 DOE Joint Genome Institute (JGI) 3300001176 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 12912481 42143 108 37 190 78 SRX3312087 Unrestricted 0.0 Metagenome 3300002256 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP06-MA 3300002256 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300036955 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - 8S-I DOE Joint Genome Institute (JGI) 3300036955 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 1182031702 2440004 1092 159 1552 264 SRX8361022 Unrestricted 8.25 Metagenome 3300027099 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF026 (SPAdes) DOE Joint Genome Institute (JGI) 3300027099 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 15419329 47686 28 3 71 6 SRX2014332 Unrestricted 0.0 Metagenome 7000000090 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160158126 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000090 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 41287094 82484 0 0 0 0 0.0 Metagenome 3300015183 *Microbiome Permanent Draft Human fecal microbial communities from infant diaper, Dhaka, Bangladesh Human fecal microbial communities from infant diaper, Dhaka, Bangladesh - DMDT001W Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300015183 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes dhtaft@ucdavis.edu Diana Taft No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant feces 23.8103 90.4125 28296339 47908 32 0 44 4 0.0 Metagenome 3300036667 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Soil microbial communities from Mojave Desert, California, United States - 6NOC DOE Joint Genome Institute (JGI) 3300036667 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Desert Soil Unclassified soil 34.3778 -117.6098 142351781 413805 397 19 778 28 SRX8199726 Unrestricted 8.85 Metagenome 3300033094 *Microbiome Finished Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang HAN_PAL Chunlab, Inc 3300033094 Metagenome Analysis SPAdes v. 3.8.3 released by JGI data releasing policy No Yes chojc@inha.ac.kr; krmoon518@gmail.com Jang-Cheon Cho; Kira Moon No Environmental Aquatic River Freshwater Unclassified Freshwater 37.5415972 127.243111 14542967 20652 0 0 0 0 0.0 Metagenome 3300039699 *Microbiome Permanent Draft Glacier soil microbial communities from Mackay Glacier, Antarctica Glacier soil microbial communities from Mackay Glacier, Antarctica - TG1-5 University of Pretoria 3300039699 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Terrestrial Glacier Soil Unclassified Glacier soil -76.654 161.09 47667668 98249 24 1 40 4 0.0 Metagenome 3300069578 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Mid-Atlantic, VA, USA - SCBI_006-M-20140915-COMP-DNA1 re-annotation Argonne National Laboratory 3300069578 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89292 -78.1395 399545 1387 13 1 24 3 ERX2133999 0.0 Metagenome 3300035496 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver small intestine microbial communities from Maple Ridge, British Columbia, Canada - Beaver1Small.Intestine1 DOE Joint Genome Institute (JGI) 3300035496 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Small intestine Digestive system Unclassified small intestine 49.18 -122.54 2141818842 2834983 90 29 201 40 SRX8344185 Unrestricted 7.1 Metagenome 3300043583 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 081-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043583 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.927 -106.9726 330286723 892515 476 14 890 21 Unrestricted 7.55 Metagenome 2016842005 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP17 Obsidian Pool Prime v1 DOE Joint Genome Institute (JGI) 2016842005 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23761787 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.733519 -110.404033 5.7 24421805 38984 21 0 35 0 Unrestricted 0.0 Metagenome 3300001051 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP2158 DOE Joint Genome Institute (JGI) 3300001051 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 12.0 -108.06 16312242 36795 32 14 45 11 SRX1982227 Unrestricted 0.0 Metagenome 3300031255 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1603-70 DOE Joint Genome Institute (JGI) 3300031255 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh sediment 42.759 -70.847 560725594 1075799 520 1 781 3 SRX6468475 Unrestricted 10.84 Metagenome 3300027933 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_host_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027933 Metagenome Analysis spades v. 3.11.1 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.7315 -110.7113 93647788 159837 50 0 67 0 SRX2918055 Unrestricted 0.0 Metagenome 3300001763 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from the Cayman Rise, Cayman Islands Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Beebe Supr51 3300001763 Metagenome Analysis IDBA_UD k52-k92 step10 released by JGI data releasing policy No Yes Gregory Dick, Sunit Jain No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 18.35 -81.85 76082151 113445 89 4 123 2 0.0 Metagenome 3300039210 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A3_80cm_0.25M University of Tennessee 3300039210 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 407577122 742852 162 4 268 9 SRX710580 0.0 Metagenome 3300049929 *Microbiome Permanent Draft Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA - 3_d_apr_JRB_CZO DOE Joint Genome Institute (JGI) 3300049929 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dawsonfairbanks@email.arizona.edu Dawson Fairbanks No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.882743 -105.537439 645029367 1121155 249 15 459 18 Unrestricted 16.79 Metagenome 3300000328 *Microbiome Permanent Draft Hypersaline microbial communities from Cahuil Solar Saltern, Chile Hypersaline microbial communities from Cahuil Solar Saltern, Chile, sample sequenced January 2012 Major University, Chile 3300000328 Metagenome Analysis Newbler v2.7 released per PI No Yes aamunoz1@uc.cl Alvaro M. Plominsky Yes 30154761 Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Unclassified Hypersaline pond -34.4999983 -80.9448435 5580611 11024 9 1 25 0 0.0 Metagenome 3300022542 *Microbiome Permanent Draft Abyssal plain sediment microbial communities from Eastern Gulf of Mexico, Atlantic Ocean Abyssal plain sediment microbial communities from Eastern Gulf of Mexico, Atlantic Ocean - EGM029 University of Calgary 3300022542 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy Yes Yes dongxiyang@tio.org.cn Xiyang DONG No Environmental Aquatic Oil seeps Marine Unclassified Abyssal plain sediment 25.3043 -90.0659 978655224 1716911 476 9 701 11 0.0 Metagenome 3300015075 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G5C, Northern proglacial tributary margin, adjacent to top of river) University of Bristol 3300015075 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soils 67.156387 -50.083767 6.01 88672076 178398 71 3 131 3 0.0 Metagenome 3300049209 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - J25_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049209 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 375240873 797020 449 18 751 25 Unrestricted 0.0 Metagenome 3300029414 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 044_10_28_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029414 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 191717031 238970 212 0 306 0 0.0 Metagenome 3300025544 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 53-2 deep-072012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025544 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 251943370 571108 162 4 300 7 SRX1987653 Unrestricted 0.0 Metagenome 3300005256 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - YNP_Beowulf Spring_E v2 (version 2) DOE Joint Genome Institute (JGI) 3300005256 Metagenome Analysis SPADES v3.5.0 released based on JGI ITS Yes Yes nnivanova@lbl.gov, binskeep@montana.edu Natasha Ivanova, William P. Inskeep Yes 23653623 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.733 -110.708917 2.84 22259846 36443 18 0 20 0 Unrestricted 0.0 Metagenome 7000000265 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 158256496 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000265 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 158929567 264821 0 0 0 0 0.0 Metagenome 3300038311 *Microbiome Permanent Draft Marine sediment microbial communities from New Orleans, USA to study impact of Deep Water Horizon explosion Marine sediment microbial communities from Barataria Bay, New Orleans, USA to study impact of Deep Water Horizon explosion - N3382 Battelle Memorial Institute 3300038311 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Coastal Marine Sediment Marine sediment 29.463 -89.88 127366432 318086 204 18 470 34 0.0 Metagenome 3300006900 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A DOE Joint Genome Institute (JGI) 3300006900 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 1311537096 2644169 1004 77 1632 129 SRX3194965 Unrestricted 0.0 Metagenome 3300012183 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ469 (22.06) DOE Joint Genome Institute (JGI) 3300012183 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.0779 164.1203 532643546 1163852 324 1 485 1 SRX3372001 Unrestricted 0.0 Metagenome 3300056881 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E1L_20_22 DOE Joint Genome Institute (JGI) 3300056881 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.997158 -81.489236 752982852 1260362 345 3 656 6 Unrestricted 11.16 Metagenome 3300004093 *Microbiome Permanent Draft Cyanobacterial communities from the Joint Genome Institute, California, USA Cyanobacterial communities from the Joint Genome Institute, California, USA - FECB-22 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300004093 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes mhess@lbl.gov, mhess@ucdavis.edu Matthias Hess No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Cyanobacterial 37.9313884 -122.0239394 88678356 118205 87 0 121 1 SRX7697656 Unrestricted 0.0 Metagenome 3300026236 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Maryland, USA - DAQMD-023 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026236 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 81055130 172323 115 15 162 18 SRX2770399 Unrestricted 0.0 Metagenome 7000000218 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 158883629 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000218 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 29464475 45320 0 0 0 0 0.0 Metagenome 3300029121 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021205-19 Beijing Genomics Institute (BGI) 3300029121 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 128851641 164311 110 0 178 0 0.0 Metagenome 3300024341 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Lake Matano, South Sulawesi, Indonesia - Watercolumn_Matano_2014_107_MG DOE Joint Genome Institute (JGI) 3300024341 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 740493820 1781895 757 17 1285 23 SRX4480657 Unrestricted 26.2 Metagenome 3300028780 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2 DOE Joint Genome Institute (JGI) 3300028780 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 1208289179 2635211 456 97 736 169 SRX5355867 Unrestricted 0.0 Metagenome 3300048590 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Sediment microbial communities from brackish wetlands in San Jose, California, USA - ROC8_2 DOE Joint Genome Institute (JGI) 3300048590 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Intertidal zone Marine Salt marsh sediment Sediment 37.427598 -121.938678 2011301643 2845077 647 53 874 78 Unrestricted 24.99 Metagenome 3300014930 *Microbiome Permanent Draft Synthetic microbial community for library methods comparison from University of Liverpool, United Kingdom Synthetic microbial communities for library methods comparison from University of Liverpool, United Kingdom - Mg71 University of Liverpool 3300014930 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 53.405936 -2.9677609 57449755 96939 36 0 43 0 ERX1325922 0.0 Metagenome 3300036556 *Microbiome Permanent Draft Extreme environments viral communities from various locations Glacier ice viral communities from Ngari, Tibet, China - 36_GP2_100.0 DOE Joint Genome Institute (JGI) 3300036556 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Ice Freshwater Glacier ice 35.2833 81.4833 180067711 377219 138 5 179 8 SRX8168568 Unrestricted 14.47 Metagenome 3300027698 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027698 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 51.62 -128.09 448734404 1132130 321 80 604 122 SRX2575215 Unrestricted 0.0 Metagenome 3300001200 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY65 J. Craig Venter Institute (JCVI) 3300001200 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 729179300 2488507 118 32 279 81 0.0 Metagenome 3300011929 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01609 Weill Cornell Medical College 3300011929 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.83 -73.91 87139776 158503 83 1 77 5 SRX823424 0.0 Metagenome 3300055483 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.17C.14 SIP fraction DOE Joint Genome Institute (JGI) 3300055483 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 269891026 480304 84 45 162 62 Unrestricted 18.28 Metagenome 3300029412 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 076_4_29_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029412 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 192018171 235697 195 0 252 0 0.0 Metagenome 3300035520 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - Beaver6Cecum1 DOE Joint Genome Institute (JGI) 3300035520 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.18 -122.54 1140235257 2114089 1406 46 2131 85 SRX8346484 Unrestricted 13.49 Metagenome 3300025542 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-7-D (SPAdes) DOE Joint Genome Institute (JGI) 3300025542 Metagenome Analysis spades v. 3.11.1 Yes Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 276199444 567490 204 20 318 39 SRX2568495 Unrestricted 0.0 Metagenome 3300012075 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Florida, USA - TSFL001 MetaG DOE Joint Genome Institute (JGI) 3300012075 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 27.6206 -81.814 173489236 299571 376 5 585 13 SRX3539431 Unrestricted 0.0 Metagenome 3300037330 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Unnamed Lake-12 #425 DOE Joint Genome Institute (JGI) 3300037330 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4747 78.2727 976957988 1794157 632 148 955 251 SRX9174207 Unrestricted 11.12 Metagenome 3300011209 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01162 Weill Cornell Medical College 3300011209 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.68 -73.91 38539915 49986 14 0 21 0 SRX823117 0.0 Metagenome 3300040525 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Mid-Atlantic, VA, USA - SCBI_049-M-20170719-COMP-DNA1 Battelle Memorial Institute 3300040525 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89292 -78.1395 2570415 7874 20 2 25 3 0.0 Metagenome 3300001920 *Microbiome Permanent Draft Stromatolite microbial communities from Laguna Bacalar, Quintana Roo, Mexico Stromatolite microbial communities from Laguna Bacalar, Quintana Roo, Mexico - Sample 5 mini 3300001920 Metagenome Analysis IDBA_UD k52-k92 step8 released by JGI data releasing policy No Yes Gregory Dick, Sunit Jain No Environmental Aquatic Microbialites Freshwater Unclassified Stromatolite 18.767324 -88.306921 136359508 183835 72 5 92 6 0.0 Metagenome 3300007766 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila suzukii female 4 gut Cornell University 3300007766 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy Yes Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila suzukii female adult gut 42.875296 -77.006403 401237676 434081 8 23 9 31 0.0 Metagenome 3300001495 *Microbiome Permanent Draft Human axilla skin microbial communities from the University of Liverpool, UK Human axilla skin microbial communities from the University of Liverpool, UK - AX02 3300001495 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Host-associated Mammals: Human Skin Integumentary system Axilla/Armpit Human axilla skin 53.3484 -3.009 9350270 18346 31 0 36 0 0.0 Metagenome 3300039098 *Microbiome Permanent Draft Marine sediment microbial communities from methane seep in Hydrate Ridge North, Pacific Ocean Marine sediment microbial communities from methane seep in Hydrate Ridge North, Pacific Ocean - 5579 California Institute of Technology 3300039098 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Cold seeps Marine Sediment Marine sediment 44.6695 -125.0982 302203013 527650 136 2 221 2 0.0 Metagenome 3300056607 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.16W.8 SIP fraction DOE Joint Genome Institute (JGI) 3300056607 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 132990438 272094 88 9 150 9 Unrestricted 11.04 Metagenome 3300014634 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01530 Weill Cornell Medical College 3300014634 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.99 18888436 30913 9 0 11 0 SRX823406 0.0 Metagenome 3300038524 *Microbiome Permanent Draft Organic and conventional farm associated microbial communities from Canada and USA Wastewater microbial communities from natural feedlot in Alberta, Canada - WW94 Colorado State University 3300038524 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 53.5 -112.06 222795448 423220 253 4 421 8 0.0 Metagenome 3300044736 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_7CS DOE Joint Genome Institute (JGI) 3300044736 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.3852 -106.1862 1411545373 2330114 403 62 669 82 SRX20649959 Unrestricted 15.88 Metagenome 3300044971 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME10Aug2006D11-rr0977 DOE Joint Genome Institute (JGI) 3300044971 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1083491932 1657997 371 34 497 50 Unrestricted 16.03 Metagenome 3300043743 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - SF99_A100 DOE Joint Genome Institute (JGI) 3300043743 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.1598 -62.7972 804449095 2235358 539 8 1006 23 Unrestricted 7.94 Metagenome 3300069254 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_004-O-20210726-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069254 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 40.043059 -105.581501 3687842670 7788370 1206 344 2081 512 0.0 Metagenome 3300007085 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila neotestacea male 3 gut Cornell University 3300007085 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy Yes Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila neotestacea male adult gut 43.025606 -77.572811 113032250 215748 114 6 189 13 0.0 Metagenome 3300040170 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 098B_R1 University of Maryland 3300040170 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.70147222 27.08997222 8370584 13058 28 4 48 3 0.0 Metagenome 3300035175 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 4_4.5_N_13_1 DOE Joint Genome Institute (JGI) 3300035175 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1866 -2.2146 1724859701 3700418 426 4 782 4 SRX8232506 Unrestricted 9.31 Metagenome 3300001624 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF022 DOE Joint Genome Institute (JGI) 3300001624 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 1487226 4288 13 2 32 2 SRX2014331 Unrestricted 0.0 Metagenome 3300046452 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere DOE Joint Genome Institute (JGI) 3300046452 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5882 -123.1927 345473652 542515 111 25 191 44 Unrestricted 21.98 Metagenome 3300036716 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 21515 DOE Joint Genome Institute (JGI) 3300036716 Metagenome Analysis metaspades v. 3.13.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.7468 -122.0193 2302607562 5180662 1248 324 1895 532 SRX8137014, SRX8137013 Unrestricted 0.0 Metagenome 3300035083 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 DOE Joint Genome Institute (JGI) 3300035083 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1125 -122.987 864819857 2070888 599 53 1035 70 SRX8288911 Unrestricted 6.84 Metagenome 3300020500 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 9JUL2008 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020500 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 86283068 171638 73 27 112 32 SRX3308909 Unrestricted 0.0 Metagenome 3300010963 *Microbiome Permanent Draft Subsoil microbial communities from Rio Tinto Huelva, Spain Subsoil microbial communities from Rio Tinto Huelva, Spain - T211 Autonomous University of Barcelona 3300010963 Metagenome Analysis SPAdes-3.8.1-Linux released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Terrestrial Unclassified Geologic Unclassified subsoil 37.26 -6.94 18640120 25178 3 0 3 0 0.0 Metagenome 3300042592 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Cornitermes pugnax from Petit Saut, French Guiana, France - Co333 Eurofins MWG Operon 3300042592 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 5.071383 -53.039049 751179275 816755 139 6 227 21 0.0 Metagenome 3300022782 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY10 Version 2 University of New South Wales 3300022782 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 38236639 66199 26 0 49 1 0.0 Metagenome 3300003641 *Microbiome Permanent Draft Cnidaria microbial communities from the Caribbean, with Black Band disease Belize Diploria 3300003641 Metagenome Analysis IDBA_UD released per PI's request No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified Cnidaria 16.80288 -88.08213 34028000 70141 30 4 54 7 0.0 Metagenome 3300025784 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC033_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025784 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 39.84 -89.0 689484126 1280091 597 2 902 1 SRX2157889 Unrestricted 0.0 Metagenome 3300045594 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_USB_028 DOE Joint Genome Institute (JGI) 3300045594 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 225518769 355378 195 3 259 4 SRX12656283 Unrestricted 45.02 Metagenome 3300010043 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama - MetaG Plot_26 DOE Joint Genome Institute (JGI) 3300010043 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes cpan@ou.edu Chongle Pan No Environmental Terrestrial Tropical forest Soil Bulk soil Tropical forest soil 9.1086 -79.8436 2711698855 5752390 1384 105 2395 187 SRX2525686 Unrestricted 0.0 Metagenome 2022920005 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - YNP8 OSP Spring v2 (version 2) DOE Joint Genome Institute (JGI) 2022920005 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23720654 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.733519 -110.7 3.3 17390485 27857 68 0 20 0 Unrestricted 0.0 Metagenome 3300037152 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_03D_14 DOE Joint Genome Institute (JGI) 3300037152 Metagenome Analysis metaspades v. 3.13.0 Yes Yes swr38@rutgers.edu; barkay@aesop.rutgers.edu Spencer W. Roth; Tamar Barkay No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9123 -147.839 560989078 1309246 319 42 545 69 SRX8229311 Unrestricted 6.83 Metagenome 3300026027 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleA_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026027 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.052509 -121.76873 41002437 118120 189 5 341 6 SRX7181929 Unrestricted 0.0 Metagenome 2263196002 *Microbiome Permanent Draft Marine microbial communities from depth transect at Landsort Deep in the Baltic Sea April 2009 400 m contigs Royal Institute of Technology 2263196002 Metagenome Analysis released per JGI data release policy No Yes daniel.lundin@scilifelab.se Daniel Lundin No Environmental Aquatic Intertidal zone Marine Sediment Marine (brackish) 58.583333 18.233333 7008531 17541 28 0 33 0 0.0 Metagenome 3300013194 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100319 University of Pennsylvania 3300013194 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 37772728 109824 81 20 178 44 SRX756338 0.0 Metagenome 3300009800 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N2_30_40 DOE Joint Genome Institute (JGI) 3300009800 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380273 -119.2723038 90485963 218665 185 16 441 30 SRX2523175 Unrestricted 0.0 Metagenome 3300000620 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 10SEP2007 hypolimnion DOE Joint Genome Institute (JGI) 3300000620 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300026524 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_09_40cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026524 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 565935002 1011782 303 13 538 10 SRX2728090 Unrestricted 0.0 Metagenome 3300025108 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025108 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.51 -76.2 398210614 881873 41 0 52 3 SRX2928922 Unrestricted 0.0 Metagenome 3300037993 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P16_D10 DOE Joint Genome Institute (JGI) 3300037993 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 911742242 1277092 239 0 350 0 SRX9404370 Unrestricted 57.68 Metagenome 3300020169 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1 DOE Joint Genome Institute (JGI) 3300020169 Metagenome Analysis spades v. 3.10.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling No Environmental Aquatic Epipelagic Marine Unclassified seawater 54.1841 7.9 750289674 1337459 404 118 561 225 SRX3989330 Unrestricted 44.72 Metagenome 3300048001 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_130731.NP1 DOE Joint Genome Institute (JGI) 3300048001 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 691387468 1522802 479 80 650 117 Unrestricted 13.43 Metagenome 3300009477 *Microbiome Permanent Draft Host-associated microbial communities of aphids from plants in several locations around USA Microbial communities of aphids from Cirsium sp. in Ottawa, Ontario, CA - Brachycaudus cardui CNC#HEM061370 seqcov University of Texas, Austin 3300009477 Metagenome Analysis CLC Genomics released per JGI data release policy Yes Yes becky.chong@utexas.edu Rebecca Chong No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Cirsium sp. 45.4516 -75.68045 207497565 106576 1 1 1 1 0.0 Metagenome 3300034895 *Microbiome Permanent Draft Sediment microbiome project Sediment microbial communities from wetland pond in Xixi Nat. Park in Hangzhou, Zhejiang, China - 6 Beijing Genomics Institute (BGI) 3300034895 Metagenome Analysis megahit v. 1.1.3 released by JGI data releasing policy No Yes 17826834892@163.com wang binhao No Environmental Aquatic Pond Freshwater Sediment sediment 30.268 120.04 250535997 341206 76 4 141 4 0.0 Metagenome 3300070725 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Mountain Lake Biological Station, Virginia, USA - MLBS_003-M-20180612-COMP-DNA1 3300070725 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 40069537 122221 98 3 226 9 0.0 Metagenome 3300007354 *Microbiome Permanent Draft Sanford Underground Research Facility - SURF_DUSEL_B Deep subsurface aquifer microbial community from Lead, South Dakota (SURF_DUSEL_B) National Aeronautics and Space Administration (NASA) 3300007354 Metagenome Analysis IDBA-UD 1.1.1 Released per PI -- the result has been published. No Yes momper@usc.edu Lily Momper No Environmental Aquatic Groundwater Freshwater Aquifer deep subsurface aquifer -44.0341666 -103.765833 7.4 1500 279823141 478086 225 1 337 1 0.0 Metagenome 3300045097 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_7_F DOE Joint Genome Institute (JGI) 3300045097 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 190222373 227108 112 1 139 1 Unrestricted 72.76 Metagenome 3300044484 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - LIV12-9-6-19 DOE Joint Genome Institute (JGI) 3300044484 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.3094 -120.7786 526412597 1343236 536 53 988 73 Restricted 7.56 Metagenome 3300002596 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Hydrocarbon contaminated oil fields microbial communities from Alberta, Canada - Microbes in water sample from Medicine Hat oil field -PW_MHGC_2012April10 McGill University 3300002596 Metagenome Analysis released per JGI data release policy No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 50.033333 -110.666667 7.2 274110281 574484 295 3 533 2 0.0 Metagenome 3300027970 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14.5m DOE Joint Genome Institute (JGI) 3300027970 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater 39.9879 -1.8737 980535301 1545245 449 80 599 117 SRX5248952 Unrestricted 29.2 Metagenome 3300070239 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountains, Colorado, USA - RMNP_045-M-20200701-COMP-DNA1 3300070239 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 68514445 192260 88 13 168 19 0.0 Metagenome 3300013178 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100309 University of Pennsylvania 3300013178 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 18988354 44096 10 0 21 0 SRX756592 0.0 Metagenome 3300006456 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human right retroauricular crease microbial communities from NIH, USA - visit 2 of subject 763961826 replicate 2 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300006456 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 35296584 50825 27 2 38 11 SRX024121, SRX098547 0.0 Metagenome 3300028716 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198 DOE Joint Genome Institute (JGI) 3300028716 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040586 -106.94868265 596329938 1584273 365 16 650 27 SRX5355398 Unrestricted 10.46 Metagenome 3300017717 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 27 SPOT_SRF_2011-10-25 DOE Joint Genome Institute (JGI) 3300017717 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 300844873 719008 121 94 199 185 SRX7207392, SRX7207393 Unrestricted 0.0 Metagenome 3300011722 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway plastic -P00359 Weill Cornell Medical College 3300011722 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Plastic surface city subway plastic 40.55 -74.13 32474956 51192 21 0 38 0 SRX822331 0.0 Metagenome 3300008695 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764083206 replicate 1 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008695 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 152400028 210294 112 0 108 0 0.0 Metagenome 3300002240 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - Naphthalene biodegradation metagenome 12C3dose DOE Joint Genome Institute (JGI) 3300002240 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes elm3@cornell.edu Eugene Madsen Yes 30051558 Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.099444 -73.604444 31505685 70516 60 0 106 1 Unrestricted 0.0 Metagenome 3300071101 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_004-M-20190618-COMP-DNA1 3300071101 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 7805250 25305 64 7 98 11 0.0 Metagenome 3300049351 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MBF3 DOE Joint Genome Institute (JGI) 3300049351 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 256707552 685182 309 4 565 9 Unrestricted 7.32 Metagenome 3300049724 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 E3 20-24 DOE Joint Genome Institute (JGI) 3300049724 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.0466 516271087 798919 243 3 381 8 Restricted 13.59 Metagenome 3300012852 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched millipede-associated microbial communities from UW Madison campus, WI, USA - HID1971I_E0 MG DOE Joint Genome Institute (JGI) 3300012852 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 115898013 174684 112 0 160 0 SRX3564456 Unrestricted 0.0 Metagenome 3300005995 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 DOE Joint Genome Institute (JGI) 3300005995 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Soil 68.6135 -149.3144 1225798732 3464907 781 38 1260 80 SRX2739468 Unrestricted 0.0 Metagenome 3300045578 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mississippi River, Louisiana, USA - NASQAN2011_188 DOE Joint Genome Institute (JGI) 3300045578 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 30.7585 -91.3959 306278920 812952 480 137 791 204 Unrestricted 0.0 Metagenome 3300014158 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin02_60_metaG DOE Joint Genome Institute (JGI) 3300014158 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1169961297 2025456 519 1 833 0 SRX3291957 Unrestricted 11.13 Metagenome 3300020187 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1 DOE Joint Genome Institute (JGI) 3300020187 Metagenome Analysis spades v. 3.10.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling No Environmental Aquatic Epipelagic Marine Unclassified seawater 54.1841 7.9 1082696566 1875356 550 91 731 167 SRX3989441 Unrestricted 38.62 Metagenome 3300025436 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA7.5M (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025436 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu; shaomei.he@gmail.com Katherine McMahon; Shaomei He No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 156260245 354432 234 5 412 4 SRX2565137 Unrestricted 0.0 Metagenome 3300002375 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 21SEP2011 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002375 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 28473979 78436 76 9 128 18 SRX1989651 Unrestricted 0.0 Metagenome 3300031595 *Microbiome Permanent Draft Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG DOE Joint Genome Institute (JGI) 3300031595 Metagenome Analysis spades v. 3.12.0 Yes Yes rbneum@uw.edu Rebecca Neumann No Host-associated Plants Rhizosphere Roots Soil rhizosphere 47.6516 -122.3045 894349058 1782674 486 4 754 19 SRX5787929 Unrestricted 9.4 Metagenome 3300022899 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S016-104C-6 DOE Joint Genome Institute (JGI) 3300022899 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 239001601 620773 456 30 947 41 SRX4801356 Unrestricted 7.79 Metagenome 3300021504 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-2-3_MG DOE Joint Genome Institute (JGI) 3300021504 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.0114 -110.5956 241930256 486164 296 5 466 17 SRX3982298 Unrestricted 15.11 Metagenome 2225789001 *Microbiome Permanent Draft Saline water microbial communities from a Tibetan plateau lake Saline water microbial communities from Qinghai Lake, Tibetan Plateau -Sample 11638 University of Illinois, Urbana-Champaign 2225789001 Metagenome Analysis released per JGI data release policy No Yes wtliu@illinois.edu Wen-Tso Liu No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline water 36.381 100.218 350082716 1105174 741 0 1328 0 0.0 Metagenome 3300012249 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - 3A3 metaG DOE Joint Genome Institute (JGI) 3300012249 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; wswingley@niu.edu Ramunas Stepanauskas; Wesley Swingley No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 41.6655 -87.5437 13-14 21911457 60048 89 5 169 4 SRX3296546 Unrestricted 0.0 Metagenome 3300029166 *Microbiome Permanent Draft Infant fecal microbial communities from Pittsburgh, USA Infant fecal microbial communities from Pittsburgh, USA - NECEvent2014_8_2 Banfield Lab, University of California, Berkeley 3300029166 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant fecal 40.4308 -79.9598 33173785 37934 58 0 69 0 0.0 Metagenome 3300023034 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung G0 DOE Joint Genome Institute (JGI) 3300023034 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Elk feces 38.04 -122.5 71840559 186144 420 0 778 1 SRX4415394 Unrestricted 7.62 Metagenome 3300069592 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Mid-Atlantic, VA, USA - BLAN_005-M-20170713-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069592 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Farm Terrestrial soil 39.06026 -78.07164 12518472 41507 80 1 139 4 0.0 Metagenome 3300023213 *Microbiome Permanent Draft Regolith bacterial community from Guaba Ridge, Luquillo Mountains, Puerto Rico Regolith bacterial community from Guaba Ridge, Luquillo Mountains, Puerto Rico - A15-25 University of Wisconsin, Madison 3300023213 Metagenome Analysis MetaSPAdes v. 3.10 released by JGI data releasing policy Yes Yes snapieralski@wisc.edu Stephanie Napieralski No Environmental Terrestrial Unclassified Geologic Unclassified Regolith 18.28 -65.79 2743589978 5046629 658 30 994 39 0.0 Metagenome 3300026311 *Microbiome Permanent Draft Anaerobic biogas reactor microbial communites from Washington, USA Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2 time_0 SIP DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026311 Metagenome Analysis spades v. 3.11.1 Yes Yes dacb@uw.edu David Beck Yes 28895946 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic biogas reactor 47.6525 -122.3049 780262485 1272701 775 3 1131 8 SRX2339322 Unrestricted 0.0 Metagenome 3300034985 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D1105S20 DOE Joint Genome Institute (JGI) 3300034985 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0387 439340963 1069949 454 2 803 2 SRX8255958 Unrestricted 6.1 Metagenome 7000000413 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 160643649 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000413 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 11230440 19472 0 0 0 0 SRX022967, SRX022966 0.0 Metagenome 3300013581 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100195 University of Pennsylvania 3300013581 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 2163017 6263 8 0 15 0 SRX756704 0.0 Metagenome 3300021123 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 18AUG2009 epilimnion DOE Joint Genome Institute (JGI) 3300021123 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 67996182 153588 88 14 150 32 Unrestricted 0.0 Metagenome 3300047275 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Brazos River, Texas, USA - NASQAN2014_190 DOE Joint Genome Institute (JGI) 3300047275 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 29.3496 -95.5824 605361760 1184642 329 52 566 96 Unrestricted 17.13 Metagenome 3300050207 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water microbial communities from Sandhills, Nebraska, United States - NSL_Smith_2017_MMG DOE Joint Genome Institute (JGI) 3300050207 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.78581 -102.52354 2360231895 3435168 855 65 1181 89 Unrestricted 20.18 Metagenome 3300037883 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_5 DOE Joint Genome Institute (JGI) 3300037883 Metagenome Analysis metaspades v. 3.13.0 Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 3334246220 5095344 528 27 866 41 SRX9140448 Unrestricted 13.56 Metagenome 3300036780 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in California, United States - CAC_7 DOE Joint Genome Institute (JGI) 3300036780 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil 35.5 -121.0 2915170822 4317744 672 94 1025 133 SRX8383906 Unrestricted 12.85 Metagenome 3300011663 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00724 Weill Cornell Medical College 3300011663 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.7 -74.01 35736692 47635 19 0 33 0 SRX822691 0.0 Metagenome 3300045181 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_3_C DOE Joint Genome Institute (JGI) 3300045181 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 173384472 208421 96 1 129 2 Unrestricted 110.37 Metagenome 3300028556 *Microbiome Permanent Draft Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG DOE Joint Genome Institute (JGI) 3300028556 Metagenome Analysis spades v. 3.11.1 Yes Yes rbneum@uw.edu Rebecca Neumann No Host-associated Plants Rhizosphere Roots Soil rhizosphere 47.6516 -122.3045 511001391 1186650 387 3 617 12 SRX5271606 Unrestricted 9.77 Metagenome 3300039074 *Microbiome Permanent Draft Freshwater lake viral communities from Lake Michigan, near Chicago, USA Freshwater lake viral communities from Lake Michigan, near Chicago, USA- Wilmette140513..1V Genewiz Inc., Loyola University 3300039074 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 42.0791 -87.683 28004738 52652 15 0 23 0 0.0 Metagenome 3300005885 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_401 DOE Joint Genome Institute (JGI) 3300005885 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 241761530 814423 418 10 810 31 SRX2564781, SRX2581052 Unrestricted 0.0 Metagenome 3300000924 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and E2 (1) DOE Joint Genome Institute (JGI) 3300000924 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 32212810 79562 40 0 73 1 SRX3311657 Unrestricted 0.0 Metagenome 3300029773 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 062_3_13_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029773 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 190906979 263962 237 0 298 0 0.0 Metagenome 3300042254 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Produce water microbial communities from Denver, Colorado, USA - PW_D10 DOE Joint Genome Institute (JGI) 3300042254 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Wastewater Mine water Industrial wastewater Produced water Produced water 39.7823 -104.9101 358959388 554017 299 13 397 29 Unrestricted 27.55 Metagenome 2124908039 *Microbiome Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Bog Site B4 v1 DOE Joint Genome Institute (JGI) 2124908039 Metagenome Analysis Velvet released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 75842057 107055 44 1 61 0 Unrestricted 0.0 Metagenome 3300000204 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 36 08/11/09 150m DOE Joint Genome Institute (JGI) 3300000204 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.5663346 -123.5193257 43319669 105962 23 2 55 0 Unrestricted 0.0 Metagenome 3300026103 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026103 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -24.9939 -35.9974 124412332 337791 82 70 70 109 SRX2753927 Unrestricted 0.0 Metagenome 3300045252 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_2_A DOE Joint Genome Institute (JGI) 3300045252 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 152016767 179409 93 2 123 3 Unrestricted 106.67 Metagenome 3300027674 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027674 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 475224810 1059518 313 34 571 40 SRX3312437 Unrestricted 0.0 Metagenome 3300048777 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 S2 50-54 DOE Joint Genome Institute (JGI) 3300048777 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3532 19.0475 307380597 403248 86 4 127 6 Restricted 36.16 Metagenome 3300000343 *Microbiome Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring cone microbial streamer communities from Mammoth Hot Spring (Liberty Cap Streamers), Yellowstone National Park, USA - T=72 v1 DOE Joint Genome Institute (JGI) 3300000343 Metagenome Analysis released based on JGI ITS Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring cone 44.972867 -110.704443 6.5 17809189 31947 12 0 20 0 Unrestricted 0.0 Metagenome 3300012673 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT399_2 DOE Joint Genome Institute (JGI) 3300012673 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9229 -106.9511 74592867 189140 238 9 577 31 SRX3368875 Unrestricted 0.0 Metagenome 3300012338 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100465 University of Pennsylvania 3300012338 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 21556046 52484 24 0 39 0 SRX756533 0.0 Metagenome 3300021977 *Microbiome Permanent Draft Characterization of microbial community from Mariana Back Arc Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Hafa_FS925 _150kmer Marine Biological Laboratory 3300021977 Metagenome Analysis IDBA-UD 1.1.3 Trembath-Reichert et al. ?Active subseafloor microbial communities from Mariana back-arc venting fluids share metabolic strategies across different thermal niches and taxa?, ISMEJ 2019 No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Hydrothermal vent fluids 16.96173128 144.86920936 623876921 1258924 713 23 964 34 0.0 Metagenome 3300070656 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_010-M-20170802-COMP-DNA1 3300070656 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 66850178 179246 120 26 244 45 0.0 Metagenome 3300070348 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Colorado, USA - CPER_002-M-20190624-COMP-DNA1 3300070348 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 27817237 78288 40 3 85 3 0.0 Metagenome 3300000612 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 12AUG2008 epilimnion DOE Joint Genome Institute (JGI) 3300000612 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300029256 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021226-74 Beijing Genomics Institute (BGI) 3300029256 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 169546042 202596 109 1 170 1 0.0 Metagenome 3300003135 *Microbiome Permanent Draft Continuous culture Bioreactor microbial community inoculated with sediment from German Wadden Sea Bioreactor microbial community inoculated from Wadden Sea, Germany - 140 days of incubation Bielefeld University, Max Planck Institute for Marine Microbiology 3300003135 Metagenome Analysis MetaVelvet v. v0.3 Made public because these are downloaded from Genbank No Yes mstrous@mpi-bremen.de Marc Strous Yes 23227024 Engineered Bioreactor Marine sediment inoculum Continuous culture Unclassified Continuous culture Bioreactor 53.273446 5.347795 21136457 40723 18 0 54 0 0.0 Metagenome 3300027708 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027708 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 46.8319 -72.5 654522253 1234666 257 58 390 115 SRX2955011 Unrestricted 0.0 Metagenome 3300060393 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210613_17_17 DOE Joint Genome Institute (JGI) 3300060393 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 613313014 853843 275 174 329 237 Unrestricted 36.23 Metagenome 3300028804 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Activated sludge microbial communities from WWTP in Nijmegen, Gelderland, Netherland - WWTP Weurt DOE Joint Genome Institute (JGI) 3300028804 Metagenome Analysis spades v. 3.11.1 Yes Yes twoyke@lbl.gov Tanja Woyke No Engineered WWTP Activated sludge Aerobic digester Unclassified activated sludge 51.82 5.87 1274654244 2399625 747 82 1092 114 SRX7098277 Unrestricted 12.16 Metagenome 3300053740 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHL_01 DOE Joint Genome Institute (JGI) 3300053740 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.40849 -82.168434 161846228 252128 7 10 3 9 Restricted 162.16 Metagenome 3300014268 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D1 DOE Joint Genome Institute (JGI) 3300014268 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.052479 -121.7687 348333830 817534 429 1 802 7 SRX7181186 Unrestricted 0.0 Metagenome 3300059315 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2021-2006 DOE Joint Genome Institute (JGI) 3300059315 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.7269 -83.42329 366716198 806438 330 114 665 164 Unrestricted 18.15 Metagenome 3300005412 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Hot Lake Consortium UCC-SLE DOE Joint Genome Institute (JGI) 3300005412 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson Yes 24312082 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 96810703 127429 117 0 157 0 SRX2575238 Unrestricted 0.0 Metagenome 3300026277 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026277 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.73825 -123.6301 303618628 544346 178 11 279 14 SRX2562381 Unrestricted 0.0 Metagenome 3300001719 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP-109 DOE Joint Genome Institute (JGI) 3300001719 Metagenome Analysis Yes Yes mbsulli@gmail.com, sacinas@icm.csic.es; mbsulli@gmail.com Matthew Sullivan, Silvia G. Acinas; Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 18.064 -133.3152 57895138 111739 69 0 101 1 SRX4915167 Unrestricted 0.0 Metagenome 3300043517 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime ecozone, Canada - Lake 07-252 Genome Quebec 3300043517 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.171199 -60.318258 1352094220 2948010 561 156 990 291 0.0 Metagenome 3300020259 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000482 (ERX556041-ERR599103) CEA Genoscope 3300020259 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -31.0136 4.6932 191324504 494559 245 32 363 69 0.0 Metagenome 3300002414 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP12-I2 3300002414 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300066013 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Barrow Environmental Observatory, Tundra, AK, USA - BARR_005-O-20170809-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066013 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 71.28241 -156.61936 31443232 90476 58 3 110 4 0.0 Metagenome 3300008732 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159611913 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008732 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 71254703 97577 63 0 82 0 0.0 Metagenome 3300011710 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00767 Weill Cornell Medical College 3300011710 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.7 -73.95 35990054 49787 14 0 21 0 SRX822733 0.0 Metagenome 3300038746 *Microbiome Draft Non-marine hypersaline viral communities of Tuz Lake, Turkey Non-marine hypersaline viral communities of Tuz Lake, Turkey - Tuz Lake water spades_assembly_filtered University of Alicante 3300038746 Metagenome Analysis Spades v. 3.10.1 released by JGI data releasing policy No Yes albayrakece@gmail.com ece albayrak No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Non-marine hypersaline water 38.7627 33.3486 7093634 16118 0 0 0 0 0.0 Metagenome 3300040984 *Microbiome Permanent Draft Bacterial communities from sewage treatment works near Birtley, UK Bioelectrochemical system biofilm bacterial communities from sewage treatment works near Birtley, UK - 27A 4M Northumbria University 3300040984 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes martin.spurr@newcastle.ac.uk Martin Spurr No Engineered Bioreactor Unclassified Anaerobic Unclassified wastewater 54.903212 -1.595078 29496257 60731 110 0 202 0 0.0 Metagenome 3300045825 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Microbial mat bacterial communities from wetland, North Slope, Alaska, United States - OKS_WetSedge1_8July2019 DOE Joint Genome Institute (JGI) 3300045825 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes demerson@bigelow.org David Emerson No Environmental Aquatic Wetlands Freshwater Unclassified wetland microbial mat 68.6727 -149.1378 1521956444 2503459 850 257 1370 343 Unrestricted 16.02 Metagenome 3300034027 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 45SNC DOE Joint Genome Institute (JGI) 3300034027 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological biocrust 34.7856 -115.66 385660223 779192 477 28 809 37 SRX7621461 Unrestricted 10.28 Metagenome 3300019755 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - BB_5_MG DOE Joint Genome Institute (JGI) 3300019755 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Microbial mats Freshwater microbial mat 38.7906 -75.1644 287282475 517495 654 24 975 42 SRX3982510 Unrestricted 9.86 Metagenome 3300010292 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 1 OAHU.JWI-67 metaG DOE Joint Genome Institute (JGI) 3300010292 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms 21.2833 -157.8469 671489144 940983 8 15 13 20 SRX2525536 Unrestricted 0.0 Metagenome 7000000300 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 159814214 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000300 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 96220883 144606 0 0 0 0 0.0 Metagenome 3300027309 *Microbiome Permanent Draft Freshwater and sediment microbial communities from a dead zone in Lake Erie, USA Freshwater microbial communities from Lake Superior, Canada - Sta WM archaea (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027309 Metagenome Analysis spades v. 3.11.1 Yes Yes rmmckay@bgsu.edu Robert M. McKay No Environmental Aquatic Lake Freshwater Unclassified Freshwater and sediment 47.77199 -86.881 73814470 89354 14 4 15 5 SRX1991081 Unrestricted 0.0 Metagenome 3300013562 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - seawater enrichment SCG52 University of British Columbia 3300013562 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 1644933 3550 1 0 6 0 SRX143161 0.0 Metagenome 3300070749 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Marvin Klemme Range Research Station, Oklahoma, USA - OAES_004-M-20180529-COMP-DNA1 3300070749 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 37821426 107222 74 8 166 16 0.0 Metagenome 3300038985 *Microbiome Draft Paddy soil microbial communities from Vercelli, Italy Paddy soil microbial communities from Vercelli, Italy - timepoint1 Max Planck Institute for Terrestrial Microbiology 3300038985 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes bei@mpi-marburg.mpg.de Qicheng Bei No Environmental Terrestrial Paddy field/soil Soil Unclassified Paddy soil 45.3241611 8.37385833 533403070 774669 66 5 107 6 0.0 Metagenome 3300043106 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - Beaver4Cecum1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043106 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.18 -122.54 276494664 526260 596 12 888 21 SRX8345947 Unrestricted 57.33 Metagenome 3300002730 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 day 99 University of Sao Paulo, Virginia Bioinformatics Institute 3300002730 Metagenome Analysis SoapDeNovo released per JGI data release policy No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 269590417 692870 11 3 48 20 0.0 Metagenome 3300004859 *Microbiome Permanent Draft Chicken cecum microbial communities from Brno, Czech Republic, of chickens treated with various antibiotics Chicken cecum microbial communities from Brno, Czech Republic, of chickens treated with various antibiotics - Lincosamide treated Masaryk University 3300004859 Metagenome Analysis IDBA released per JGI data release policy No Yes djurdjica.marosevic@gmail.com Durdica Marosevic No Host-associated Birds Large intestine Digestive system Ceca chicken cecum 49.19522 16.60796 69229515 122590 161 1 261 3 0.0 Metagenome 3300027591 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027591 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 339766898 789707 258 26 413 50 SRX3312067 Unrestricted 0.0 Metagenome 3300013870 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In3-11 gowning area SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300013870 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1 -118.1 81189336 117555 54 13 88 35 Unrestricted 0.0 Metagenome 3300032366 *Microbiome Permanent Draft STAs constructed wetland biome Wetland sediment microbial communities from Everglades, Florida, USA - STA10-Sample01_1 Combine1 University of Florida 3300032366 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy No Yes ng.hanh24@gmail.com Hanh Nguyen No Environmental Aquatic Wetlands Freshwater Sediment sediment 26.38 -80.51 6.6-8.4 76730447 113986 61 6 118 6 0.0 Metagenome 3300006794 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_09_30cm DOE Joint Genome Institute (JGI) 3300006794 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 1422575448 3275536 1365 64 2316 91 SRX2726803 Unrestricted 0.0 Metagenome 3300040680 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from LBJ National Grassland , Southern Plains, TX, USA - CLBJ_038-O-20160817-COMP-DNA1 Battelle Memorial Institute 3300040680 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 33.40123 -97.57 1010590 3263 16 1 26 3 0.0 Metagenome 3300011434 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT814_2 DOE Joint Genome Institute (JGI) 3300011434 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9777 -107.0023 451193859 988179 373 42 795 63 SRX3539422 Unrestricted 0.0 Metagenome 3300045162 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_1_F DOE Joint Genome Institute (JGI) 3300045162 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 147212378 167111 91 1 122 1 Unrestricted 117.44 Metagenome 3300032017 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4 DOE Joint Genome Institute (JGI) 3300032017 Metagenome Analysis spades v. 3.13.0 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Bulk soil soil 39.6475 -79.9369 1413722004 3629789 1176 14 2195 34 SRX5809530 Unrestricted 7.46 Metagenome 3300014850 *Microbiome Permanent Draft Lettuce associated viral communities from produce distribution center in Michigan, USA Romaine lettuce associated viral communities from produce distribution center in Michigan, USA - FR14 Michigan State University 3300014850 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Romaine lettuce 781778 1286 9 2 7 3 SRX1429211 0.0 Metagenome 3300004242 *Microbiome Permanent Draft Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Medium cellulose week 11 DOE Joint Genome Institute (JGI) 3300004242 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes rallen2@staffmail.ed.ac.uk Rosalind Allen No Environmental Aquatic Pond Freshwater Sediment Freshwater 55.9225 -3.1724 1177813712 3296656 1333 62 2802 152 SRX7158207 Unrestricted 0.0 Metagenome 3300003879 *Microbiome Permanent Draft Plastic marine debris microbial communities from the Atlantic Ocean Plastic marine debris microbial communities from the Atlantic Ocean - SEA_0107_20120607_metagen Marine Biological Laboratory 3300003879 Metagenome Analysis CLC workbench 7 released per JGI data release policy No Yes amaral@mbl.edu Linda Amaral-Zettler No Environmental Aquatic Oceanic Marine Unclassified marine 35.55167 -65.65833 253664549 491633 89 25 163 50 0.0 Metagenome 3300059787 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1546B-02 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059787 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2311 -123.8825 164820986 348482 155 9 240 16 SRX2753623 Unrestricted 0.0 Metagenome 3300049432 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_18BD DOE Joint Genome Institute (JGI) 3300049432 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4242 -106.2374 1773501252 2911330 785 42 1352 52 SRX20650026 Unrestricted 0.0 Metagenome 3300042164 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Seawater microbial communities from Algarve, Portugal - SW01 v2 Molecular Research LP (MR DNA) 3300042164 Metagenome Analysis Metawrap workflow v. 1.0.8 released by JGI data releasing policy Yes Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Environmental Aquatic Oceanic Marine Unclassified seawater 36.979778 -7.989111 56318745 72696 17 5 25 5 0.0 Metagenome 3300034236 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 34SMC DOE Joint Genome Institute (JGI) 3300034236 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological biocrust 34.3778 -117.6098 316505399 757826 555 27 978 41 SRX7620448 Unrestricted 8.96 Metagenome 3300035685 *Microbiome Permanent Draft Biological soil crust microbial communities from Mojave Desert, California, United States Biological soil crust microbial communities from Mojave Desert, California, United States - LAC_S1 DOE Joint Genome Institute (JGI) 3300035685 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erik@olemiss.edu Erik Hom No Environmental Terrestrial Soil crust Soil Biological soil crust 34.1736 -115.3888 1742660219 3512923 1296 28 2169 48 SRX8380277 Unrestricted 14.29 Metagenome 3300012225 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT860_2 DOE Joint Genome Institute (JGI) 3300012225 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8894 -106.9073 148262774 373155 363 14 771 35 SRX3539217 Unrestricted 0.0 Metagenome 3300043757 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Para, Brazil - P14 DOE Joint Genome Institute (JGI) 3300043757 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -3.2945 -54.8517 773111727 1824431 402 3 750 4 Unrestricted 7.78 Metagenome 3300001559 *Microbiome Finished Human fecal microbial communities from the University of Tokyo, Japan, of healthy Japanese infants and adults Human fecal microbial communities from the University of Tokyo - healthy human sample F2-V, Adult, Male 3300001559 Metagenome Analysis PCAP released per Nikos No Yes hattori@k.u-tokyo.ac.jp Hattori M Yes 17916580 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 35.71 139.76 0 0 0 0 0 0 0.0 Metagenome 3300045480 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-674 Genome Quebec 3300045480 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.559465 -124.814538 829236811 1849950 342 108 623 210 0.0 Metagenome 3300001365 *Microbiome Permanent Draft Kakapo fecal microbial communities from Codfish Island, New Zealand Kakapo fecal microbial communities from Codfish Island, New Zealand - Kakapo Chick1 New Zealand Genomics Limited 3300001365 Metagenome Analysis released per JGI data release policy No Yes dwai012@aucklanduni.ac.nz, d.waite1986@gmail.com David Waite No Host-associated Birds Large intestine Digestive system Fecal Kakapo fecal -46.77 167.63 311217193 1358810 3603 7 6054 27 0.0 Metagenome 3300025800 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial mat communities from California, USA to study Microbial Dark Matter (Phase II) - Cone Pool mat layer E metaG (SPAdes) (version 4) DOE Joint Genome Institute (JGI) 3300025800 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; jspear@mines.edu Ramunas Stepanauskas; John Spear No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 246538505 527772 359 3 579 11 SRX7204507 Unrestricted 0.0 Metagenome 3300059769 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1449C-02 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059769 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2327 -123.9168 163380989 363440 144 13 276 12 SRX2753619 Unrestricted 0.0 Metagenome 3300001318 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-5cm)- 6 month illumina University of Tennessee 3300001318 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 4297356 23567 29 4 51 9 0.0 Metagenome 3300056797 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - APS1_1W_TP2_16O DOE Joint Genome Institute (JGI) 3300056797 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 1756410351 2354617 569 92 705 99 Unrestricted 30.52 Metagenome 3300044777 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - Rondonia_Forest_3_A0m DOE Joint Genome Institute (JGI) 3300044777 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.142 -62.882 506456803 1406910 379 2 705 7 Unrestricted 8.15 Metagenome 3300011550 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01045 Weill Cornell Medical College 3300011550 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.67 -73.9 23520148 34300 12 0 12 0 SRX823007 0.0 Metagenome 3300012905 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2 DOE Joint Genome Institute (JGI) 3300012905 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 697238598 1780427 659 43 1259 81 SRX3297478 Unrestricted 3.94 Metagenome 3300043438 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Jun2013-rr0329 DOE Joint Genome Institute (JGI) 3300043438 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 770017211 1160967 212 38 281 52 Unrestricted 20.28 Metagenome 3300009784 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Embiratermes neotenicus P4 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P4 DOE Joint Genome Institute (JGI) 3300009784 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 5.0626 -53.0462 2182300635 3006089 926 31 1535 77 SRX3006947 Unrestricted 0.0 Metagenome 3300038659 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Unnamed Lake 16, Antarctica - #986 Australian Centre for Ecogenomics 3300038659 Metagenome Analysis Spades v. 3.13.0 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.452617 78.1915 362974206 710664 180 18 278 20 0.0 Metagenome 3300025477 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_13_150 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025477 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 257402635 460506 157 7 231 5 SRX3003648 Unrestricted 0.0 Metagenome 3300006212 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 763820215 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006212 Metagenome Analysis SPADES v3.6.1 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 3292671 7245 4 0 10 0 0.0 Metagenome 3300002038 *Microbiome Permanent Draft Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease - 2012_BI_B2 3300002038 Metagenome Analysis IDBA-UD + SOAPdenovo + GAA made public per user request (Enrique Zozaya - 05/02/16 email) No Yes t.thomas@unsw.edu.au Torsten Thomas Yes 28419766 Host-associated Algae Ectosymbionts Red algae Unclassified Delisea pulchra -33.59 151.13 909199916 3508503 254 118 591 249 0.0 Metagenome 3300041684 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_322 MetaG AgResearch, New Zealand, Mosgeil 3300041684 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 735548070 1659516 396 24 1146 53 0.0 Metagenome 3300011786 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00312 Weill Cornell Medical College 3300011786 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.73 -74.0 34487711 58981 22 0 39 0 SRX822285 0.0 Metagenome 3300026985 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 E3 (SPAdes) DOE Joint Genome Institute (JGI) 3300026985 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 69171690 103547 83 0 98 0 SRX3311652 Unrestricted 0.0 Metagenome 3300061117 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIIF4SW PMA-treated Jet Propulsion Laboratory, California Institute of Technology 3300061117 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 5007571 4940 1 2 4 5 SRX3244861, SRX3808508, SRX3244868, SRX3808513 0.0 Metagenome 3300028341 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #85 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028341 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 38764301 73270 28 5 58 17 SRX3241781 Unrestricted 0.0 Metagenome 3300017911 *Microbiome Permanent Draft Marine microbial communities from Caribbean coral reef seawater Marine microbial communities from Caribbean coral reef seawater, Florida Keys, United States - site GB19 University of Illinois, Urbana-Champaign 3300017911 Metagenome Analysis MEGAHIT v1.1.1-2-g02102e1 released by JGI data releasing policy No Yes lweber@whoi.edu Laura Weber No Environmental Aquatic Intertidal zone Marine Coral reef seawater 24.55228 -81.437 292744585 406375 117 11 123 18 0.0 Metagenome 3300009108 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 234m, 2.7-0.2um, replicate a Georgia Genomics Facility 3300009108 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 424298509 572162 272 1 325 3 0.0 Metagenome 3300008705 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 763982056 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008705 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 175420349 246506 87 0 139 0 0.0 Metagenome 3300008093 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-17 DOE Joint Genome Institute (JGI) 3300008093 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 1014328955 1742697 1028 41 1624 59 SRX3198552 Unrestricted 0.0 Metagenome 3300057204 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2020-0026 DOE Joint Genome Institute (JGI) 3300057204 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.76265 -83.329 216632527 477088 187 106 374 164 Unrestricted 14.55 Metagenome 3300021285 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen5, Rep 1, Penicillin and Streptomycin DOE Joint Genome Institute (JGI) 3300021285 Metagenome Analysis spades v. 3.11.1-check Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4149 -119.841 103564988 135764 43 8 54 13 SRX4038240 Unrestricted 200.29 Metagenome 3300029420 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 044_10_31_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029420 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 196425681 245911 233 0 317 0 0.0 Metagenome 3300044246 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Estuarine water microbial communities from San Francisco Bay, California, United States - Nov18_FB_3_27D DOE Joint Genome Institute (JGI) 3300044246 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 37.6183 -122.2916 205114498 370544 160 39 226 70 Unrestricted 221.01 Metagenome 3300029995 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E3_2 DOE Joint Genome Institute (JGI) 3300029995 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 584611306 1356794 774 80 1315 136 SRX5799338 Unrestricted 10.86 Metagenome 3300039442 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09 v2 DOE Joint Genome Institute (JGI) 3300039442 Metagenome Analysis MEGAHIT v. 1.2.7 Released on PI's request No Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified exposed rock -19.28 -43.5919 1397409539 2410507 1314 79 2527 125 SRX4020654 0.0 Metagenome 3300009436 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome DOE Joint Genome Institute (JGI) 3300009436 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 69.2303 7.7302 2327189587 4108225 959 1184 1162 1771 SRX2997872 Unrestricted 0.0 Metagenome 3300013407 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100182 University of Pennsylvania 3300013407 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 5243338 8311 3 3 6 6 SRX756351 0.0 Metagenome 3300035512 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - Beaver4Rectum1 DOE Joint Genome Institute (JGI) 3300035512 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Rectum rectum 49.18 -122.54 1250376741 2060406 1107 26 1470 36 SRX8346146 Unrestricted 12.17 Metagenome 3300013688 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00852 Weill Cornell Medical College 3300013688 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -74.01 17963285 25040 6 0 12 0 SRX822818 0.0 Metagenome 3300046331 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_104 DOE Joint Genome Institute (JGI) 3300046331 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9223 -106.9493 291212109 746548 848 7 1756 12 Restricted 0.0 Metagenome 3300031337 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-130 DOE Joint Genome Institute (JGI) 3300031337 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.759 -70.891 419387379 742923 338 0 467 3 SRX5358426 Unrestricted 18.85 Metagenome 7000000155 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160765029 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000155 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 43448863 73697 0 0 0 0 0.0 Metagenome 3300007927 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 765620695 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007927 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2306236 2626 1 0 3 0 0.0 Metagenome 3300005166 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0927_02_40cm DOE Joint Genome Institute (JGI) 3300005166 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 1338451029 3636196 1523 49 2718 92 SRX2519698 Unrestricted 0.0 Metagenome 3300003102 *Microbiome Permanent Draft Soil and Ice psychrophilic microbial communities from Leh Laddakh, India Soil and Ice psychrophilic microbial communities from Leh Laddakh, India - psychrophilic sample National Bureau of Agriculturally Important Microorganisms, Indian Council of Agricultural Research 3300003102 Metagenome Analysis GS De Novo Assembler v. 2.3 Made public because these are downloaded from Genbank No Yes aroradilip@nbaim.org.in Arora DK No Environmental Terrestrial Sand Soil Unclassified Soil and Ice psychrophilic 34.1453972 77.5676139 3997411 11352 20 0 28 0 0.0 Metagenome 3300020677 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 13JUN2007 epilimnion DOE Joint Genome Institute (JGI) 3300020677 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 25485584 55005 33 20 43 29 Unrestricted 0.0 Metagenome 3300039224 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-1_at_7-8_cm Genome Quebec 3300039224 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89934 -73.72822 401276800 1056475 587 12 1218 9 0.0 Metagenome 3300008939 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T8 (2) BES Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2) Shell Corporation 3300008939 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 92414601 325353 126 1 212 1 0.0 Metagenome 3300026659 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A3-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026659 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 6882545 21423 67 4 108 7 SRX1991220 Unrestricted 0.0 Metagenome 3300034103 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119 DOE Joint Genome Institute (JGI) 3300034103 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1664858604 3293943 837 92 1352 156 SRX7622088 Unrestricted 11.93 Metagenome 3300039600 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Moab, Southern Rockies & Colorado Plateau, UT, USA - MOAB_001-M-20160727-COMP-DNA1 Battelle Memorial Institute 3300039600 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.24833 -109.38827 86509275 232633 171 5 310 4 0.0 Metagenome 3300051105 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_46 DOE Joint Genome Institute (JGI) 3300051105 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -75.482 159.591 526453510 766842 165 13 248 16 SRX18235980 Restricted 0.0 Metagenome 3300034524 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from deep shales in Oklahoma, United States - K-7-2 DOE Joint Genome Institute (JGI) 3300034524 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back fracking water 35.812 -98.262 184179585 249931 264 3 268 12 SRX8135994 Unrestricted 275.48 Metagenome 3300070404 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_004-M-20180716-COMP-DNA1 3300070404 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 53863479 159096 109 5 214 9 0.0 Metagenome 3300070942 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_001-O-20160803-COMP-DNA1 3300070942 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 3657748 13804 26 12 78 17 0.0 Metagenome 3300000357 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM177 Beijing Genomics Institute (BGI), Macrogen 3300000357 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 134334920 273590 492 1 746 2 0.0 Metagenome 3300043014 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver proximal colon microbial communities from Maple Ridge, British Columbia, Canada - Beaver4Prox.Colon1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043014 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Proximal colon proximal colon 49.18 -122.54 168283133 325958 417 10 626 16 SRX8346076 Unrestricted 44.5 Metagenome 3300042307 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2016-rr0412 DOE Joint Genome Institute (JGI) 3300042307 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 893194210 1356151 250 59 324 68 Unrestricted 25.32 Metagenome 3300012932 *Microbiome Permanent Draft Guam Dysideidae Sponge Holobiont Metagenomes Dysideidae sponge tissue microbial communities from Piti Bomb Holes, Guam, USA - GUM098 University of California, San Diego, Scripps Institute of Oceanography 3300012932 Metagenome Analysis IDBA-UD v 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton Yes 28319100, 32576248 Host-associated Porifera Unclassified Sponge Unclassified sponge tissue 13.345738 144.638186 624732877 611389 221 4 235 6 0.0 Metagenome 3300064806 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 615 in Smith, Alberta, Canada - S00JY_0636 Microbiome Insights 3300064806 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 55.07270132 -113.545927 195484690 279064 75 0 106 0 0.0 Metagenome 3300033167 *Microbiome Permanent Draft Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_3_08-R3 DOE Joint Genome Institute (JGI) 3300033167 Metagenome Analysis spades v. 3.13.0 Yes Yes ziels@mail.ubc.ca Ryan Ziels No Engineered Bioreactor Unclassified Anaerobic Unclassified sludge 51.9691 5.6654 390259283 578261 369 0 487 0 SRX7542621 Unrestricted 60.93 Metagenome 3300045416 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-503 Genome Quebec 3300045416 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 52.011725 -125.008155 1351834191 3204535 541 140 920 240 0.0 Metagenome 3300036804 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in New South Wales, Australia - Pi_6 DOE Joint Genome Institute (JGI) 3300036804 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil -34.5 150.0 1470046082 2399263 341 62 536 105 SRX8386009 Unrestricted 16.58 Metagenome 3300026895 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026895 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 66199081 157260 60 0 137 0 SRX1984823 Unrestricted 0.0 Metagenome 3300037262 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 711 P-2-S DOE Joint Genome Institute (JGI) 3300037262 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0472 1255657087 2511891 448 49 832 83 SRX8145081 Unrestricted 8.09 Metagenome 3300027000 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 41 (SPAdes) DOE Joint Genome Institute (JGI) 3300027000 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 98641627 228138 98 0 183 1 SRX4340892 Unrestricted 0.0 Metagenome 7000000009 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160380657 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000009 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 112124007 187124 0 0 0 0 0.0 Metagenome 3300031824 *Microbiome Permanent Draft Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 DOE Joint Genome Institute (JGI) 3300031824 Metagenome Analysis spades v. 3.12.0 Yes Yes agaudin@ucdavis.edu Amelie Gaudin No Host-associated Plants Rhizosphere Roots Soil rhizosphere 38.5 -121.7 4389483851 11382571 2670 173 4611 279 SRX5799634 Unrestricted 8.58 Metagenome 3300022053 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022053 Metagenome Analysis spades v. 3.11.1-check Yes Yes bcampb7@clemson.edu Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 37.1 -76.0972 116636030 330139 1 1 0 1 SRX3362780, SRX3362781, SRX2753471 Unrestricted 0.0 Metagenome 3300040549 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Jones Ecological Research Center, Southeast, GA, USA - JERC_006-M-20170724-COMP-DNA1 Battelle Memorial Institute 3300040549 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.19484 -84.46861 2639646 8408 40 2 52 6 0.0 Metagenome 3300022761 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA4 Version 2 University of New South Wales 3300022761 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 31172781 48472 18 1 26 3 0.0 Metagenome 3300040616 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_007-O-20160720-COMP-DNA1 Battelle Memorial Institute 3300040616 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 1462250 4198 43 7 57 17 0.0 Metagenome 3300000585 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 22JUL2008 epilimnion DOE Joint Genome Institute (JGI) 3300000585 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300032321 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 17-116 Genome Quebec 3300032321 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.456735 -72.205891 500465048 1074288 257 74 495 150 0.0 Metagenome 3300049290 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MB17 DOE Joint Genome Institute (JGI) 3300049290 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 69593570 182276 220 7 472 5 Unrestricted 23.82 Metagenome 3300011945 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00449 Weill Cornell Medical College 3300011945 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -73.79 31377535 43813 12 0 22 0 SRX822418 0.0 Metagenome 3300050354 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - YNP_Soil_1 DOE Joint Genome Institute (JGI) 3300050354 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Adjacent soil Adjacent soil 44.7986 -110.7207 566962437 874992 128 66 159 108 Unrestricted 141.69 Metagenome 3300026746 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06K2-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026746 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 18179576 59177 78 1 154 7 SRX2576203 Unrestricted 0.0 Metagenome 3300029885 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35707 Beijing Genomics Institute (BGI) 3300029885 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 182428633 235304 165 1 219 2 0.0 Metagenome 3300027184 *Microbiome Permanent Draft Rhizosphere and bulk soil microbial communities from Harvard Forest, USA Rhizosphere microbial communities from Harvard Forest, USA - 3Rhizosphere_NRneg metaG (SPAdes) DOE Joint Genome Institute (JGI) 3300027184 Metagenome Analysis spades v. 3.11.1 Yes Yes deangelis@microbio.umass.edu Kristen M. DeAngelis PhD No Host-associated Plants Rhizosphere Roots Soil rhizosphere 42.5502 -72.1737 1509004 4624 6 1 17 3 SRX2718160 Unrestricted 0.0 Metagenome 3300005773 *Microbiome Permanent Draft Human lung microbial communities from healthy (non-smokers and smokers) and HIV infected subjects Human lung microbial communities from HIV infected subject HIV100824-1 New York University Langone Medical Center 3300005773 Metagenome Analysis Shotgun released per JGI data release policy No Yes leopoldo.segal@nyumc.org Leopoldo N Segal No Host-associated Mammals: Human Lung Respiratory system Unclassified Lung Microbiome 40.7127 -74.0059 2982817 8814 2 1 3 3 0.0 Metagenome 3300014187 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Honduras to Iowa, USA - H1 Iowa State University 3300014187 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 12146971 24811 0 3 0 1 SRX1150284 0.0 Metagenome 3300008250 *Microbiome Permanent Draft Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico and Hudson Canyon, USA Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM9B Gulf of Mexico DOE Joint Genome Institute (JGI) 3300008250 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mcredmond@uncc.edu Molly C. Redmond No Environmental Aquatic Cold seeps Marine Unclassified Methane seep mesocosm 27.37 -90.57 621505971 1127292 1656 0 2331 0 Unrestricted 0.0 Metagenome 3300028292 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Site 227 with 3.0UM filter - spades J. Craig Venter Institute 3300028292 Metagenome Analysis Spades v. 3.11.1 Released per Simon Roux. Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4 78.18278 6.94 11819279 25050 15 0 32 0 0.0 Metagenome 3300020158 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-6m DOE Joint Genome Institute (JGI) 3300020158 Metagenome Analysis spades v. 3.10.1 Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.688 -93.689 499365656 1111124 441 46 725 72 SRX3984344 Unrestricted 27.41 Metagenome 3300001172 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 DOE Joint Genome Institute (JGI) 3300001172 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 31205676 91294 119 38 218 53 SRX3314127 Unrestricted 0.0 Metagenome 3300011477 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00469 Weill Cornell Medical College 3300011477 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.79 -73.97 18388405 26381 8 0 16 0 SRX822438 0.0 Metagenome 3300047352 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_180808.NP2 DOE Joint Genome Institute (JGI) 3300047352 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 597792245 1156043 305 32 446 54 Unrestricted 18.02 Metagenome 3300008461 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 370425937 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008461 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 52476086 58295 40 0 72 0 0.0 Metagenome 3300066277 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_009-M-20140327-COMP-DNA1 re-annotation Argonne National Laboratory 3300066277 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 66817928 199281 55 14 137 14 ERX2133950 0.0 Metagenome 3300033483 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A DOE Joint Genome Institute (JGI) 3300033483 Metagenome Analysis spades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified soil 41.3776 -82.5117 3706602402 9604368 2644 65 4722 122 SRX6892912 Unrestricted 7.92 Metagenome 3300002097 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection A1 DOE Joint Genome Institute (JGI) 3300002097 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.53 -107.78 113674719 281053 164 1 333 2 SRX1990959 Unrestricted 0.0 Metagenome 3300045596 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_USB_077 DOE Joint Genome Institute (JGI) 3300045596 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes nwfortney@gmail.com; dnoguera@wisc.edu Nathaniel Fortney; Daniel Noguera No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 207198753 307894 212 4 312 4 SRX12656338 Unrestricted 51.69 Metagenome 3300025786 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG13_big_fil_rev_8/21/14_2.50 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025786 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 290758495 495365 317 26 431 29 SRX3348157 Unrestricted 0.0 Metagenome 3300026013 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026013 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.04565 -121.866287 50441257 144691 129 0 218 0 SRX7180841 Unrestricted 0.0 Metagenome 3300004160 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 46_HOW7 DOE Joint Genome Institute (JGI) 3300004160 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 69188709 151260 62 5 118 13 SRX2720580 Unrestricted 0.0 Metagenome 3300000041 *Microbiome Draft Arabidopsis rhizosphere microbial communities from the University of North Carolina Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 old rhizosphere DOE Joint Genome Institute (JGI) 3300000041 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes sgtringe@lbl.gov, sgtringe@lbl.gov; dangl@email.unc.edu Susannah Tringe, Susannah Tringe; Jeff Dangl Yes 22859206 Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 39.0042816 -77.1012173 102755631 316800 520 19 969 36 Unrestricted 0.0 Metagenome 3300069256 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Santa Rita Experimental Range, Tucson, Arizona, USA - SRER_053-M-20210810-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069256 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Desert Soil Unclassified Terrestrial soil 31.909824 -110.835912 3970983079 9656943 2751 22 5387 43 0.0 Metagenome 3300001626 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF013 DOE Joint Genome Institute (JGI) 3300001626 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 3967586 13916 23 5 22 3 SRX2014334 Unrestricted 0.0 Metagenome 3300045240 *Microbiome Permanent Draft Forest soil microbial communities from boreal-temperate forests in Minnesota, USA Forest soil microbial communities from Cloquet Forestry Center, Minnesota, USA - Cloquet DRY DO E7 DOE Joint Genome Institute (JGI) 3300045240 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pankaj.trivedi@colostate.edu Pankaj Trivedi No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 46.31 -92.3 541778004 901321 233 9 383 14 Unrestricted 13.51 Metagenome 3300020393 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000161 (ERX556105-ERR599054) CEA Genoscope 3300020393 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 0.0033 71.6428 789226861 2039564 504 28 761 56 0.0 Metagenome 3300015285 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_22AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015285 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 124976447 237882 27 40 48 58 SRX3926140 Unrestricted 9.8 Metagenome 3300014636 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00280 Weill Cornell Medical College 3300014636 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.73 -73.99 23017955 31701 10 0 9 0 SRX822253 0.0 Metagenome 3300042995 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Roholtiella mojaviensis WJT36-NPBG5B and co-occurring heterotrophs from granitic soil from Wonderland of Rocks, Joshua Tree National Park, Mojave Desert, CA, USA - 20200702_47 DOE Joint Genome Institute (JGI) 3300042995 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Desert Soil Unclassified Granitic soil 34.0413 -116.145 87620720 99722 56 3 71 2 SRX20998740 Unrestricted 98.84 Metagenome 3300055092 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_28-s55 day 308 DOE Joint Genome Institute (JGI) 3300055092 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1693657955 2522133 453 195 582 218 Unrestricted 32.04 Metagenome 3300002578 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Freshwater sediment microbial communities from Taif River, Saudi Arabia - Upstream of wastewater discharge Sample CS1-C 454 Life Sciences 3300002578 Metagenome Analysis No Yes lidong460@gmail.com Dong Li No Environmental Aquatic River Freshwater Sediment Freshwater sediment 21.342219 40.479289 6-8 0 0 0 0 0 0 0.0 Metagenome 3300000961 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP1649 DOE Joint Genome Institute (JGI) 3300000961 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -5.74 -170.77 53520525 137759 88 0 164 0 SRX1982440 0.0 Metagenome 3300014169 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin11_10_metaG DOE Joint Genome Institute (JGI) 3300014169 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1632838984 3310865 831 108 1441 190 SRX3293635 Unrestricted 5.04 Metagenome 3300031398 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #1058 DOE Joint Genome Institute (JGI) 3300031398 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.457 78.1911 329036273 547388 146 53 199 66 SRX5649544 Unrestricted 33.13 Metagenome 3300044734 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_27CS DOE Joint Genome Institute (JGI) 3300044734 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.3761 -106.1002 1178150365 1961483 407 63 693 80 SRX20650051 Unrestricted 15.95 Metagenome 3300038526 *Microbiome Permanent Draft Activated sludge microbial communities from CSTR anaerobic reactor in Belvaux, Luxembourg Activated sludge microbial communities from CSTR anaerobic reactor in Belvaux, Luxembourg - CSTR_M4 Luxembourg Institute of Science and Technology 3300038526 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Bioreactor Unclassified Anaerobic Unclassified Activated sludge 49.508281 5.943742 28635483 47243 36 0 54 0 0.0 Metagenome 3300030370 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - WLA2 Michigan State University 3300030370 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 33.72215 -118.2662 24218069 66691 0 0 3 0 0.0 Metagenome 3300013643 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100502 University of Pennsylvania 3300013643 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 5707586 16976 14 2 23 4 SRX756496 0.0 Metagenome 3300034409 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Leptogorgia sarmentosa from Algarve, Portugal - LS06H Molecular Research LP (MR DNA) 3300034409 Metagenome Analysis Metawrap workflow v. 1.0.7 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 60553530 66164 7 1 8 4 0.0 Metagenome 3300029307 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021589-142 Beijing Genomics Institute (BGI) 3300029307 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 137079283 175361 107 0 147 0 0.0 Metagenome 3300014091 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00598 Weill Cornell Medical College 3300014091 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.76 -73.96 33666441 44103 10 0 20 0 SRX822565 0.0 Metagenome 3300071011 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_008-M-20200711-COMP-DNA1 3300071011 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 34369178 103133 170 6 371 5 0.0 Metagenome 3300013320 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100280 University of Pennsylvania 3300013320 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3761139 11622 17 0 16 1 SRX756621 0.0 Metagenome 3300070529 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Arizona, USA - SRER_043-M-20180801-COMP-DNA1 Battelle Memorial Institute 3300070529 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.910099 -110.837175 9.13-9.25 9425952 30302 52 1 106 0 0.0 Metagenome 3300053083 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere DOE Joint Genome Institute (JGI) 3300053083 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5875 -123.1935 310776801 584859 241 22 484 35 Unrestricted 0.0 Metagenome 3300007764 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_D2_MG DOE Joint Genome Institute (JGI) 3300007764 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Terrestrial Wetlands Soil Unclassified Soil 37.496 -122.1329 408194331 830575 427 5 766 15 SRX2523668 Unrestricted 0.0 Metagenome 3300030692 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - As.Sf.e (v2) (version 2) DOE Joint Genome Institute (JGI) 3300030692 Metagenome Analysis spades v. 3.12.0 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.7658 -100.163 1770074211 3289843 715 367 1248 542 SRX2124702 Unrestricted 0.0 Metagenome 3300026561 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Hot Lake Consortium UCC-L28 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026561 Metagenome Analysis spades v. 3.11.1 Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 80217057 102502 46 0 56 0 SRX2518461 Unrestricted 0.0 Metagenome 3300002181 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Olavius algarvensis symbiont microbial communities from Tuscany, Italy - Type A ELBA extract 3 DOE Joint Genome Institute (JGI) 3300002181 Metagenome Analysis SOAPdenovo v. Version 1.05: testing... 2010 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 42.8072 10.1411 1246053192 6280878 47 113 116 85 SRX3322759 0.0 Metagenome 3300009663 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC075_MetaG DOE Joint Genome Institute (JGI) 3300009663 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 37.8 -122.27 686038037 1288765 900 9 1317 7 SRX2338989 Unrestricted 0.0 Metagenome 3300048111 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_120208.NP1 DOE Joint Genome Institute (JGI) 3300048111 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 658525987 1449944 487 114 694 199 Unrestricted 13.55 Metagenome 3300025945 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025945 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 3854373111 9016450 1326 103 2633 171 SRX2740168 Unrestricted 0.0 Metagenome 3300035492 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Tar microbial communities from Pitch Lake, Trinidad and Tobago - PitchLake_TarA_star DOE Joint Genome Institute (JGI) 3300035492 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Tar Asphalt lakes Unclassified tar 10.23 -61.62 269765692 459513 247 3 375 4 SRX8343790 Unrestricted 68.69 Metagenome 3300000133 *Microbiome Draft Marine microbial communities from chronically polluted sediments in four geographic locations Marine microbial communities from chronically polluted sediments in Adventfjord, Norway - Svalbard Archipelago station 1 sample NOR 02_45m DOE Joint Genome Institute (JGI) 3300000133 Metagenome Analysis released based on JGI ITS Yes Yes hdionisi@cenpat.edu.ar Hebe Dionisi No Environmental Aquatic Intertidal zone Marine Sediment Marine 78.237209 15.677776 105310906 284073 293 89 492 139 Unrestricted 0.0 Metagenome 3300070830 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_044-M-20180618-COMP-DNA1 3300070830 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 16255763 48797 74 3 108 7 0.0 Metagenome 3300032273 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Coastal sediment microbial communities from Oude Bieten Haven, Netherlands - site A oxic DOE Joint Genome Institute (JGI) 3300032273 Metagenome Analysis spades v. 3.13.0 Yes Yes jbeam@bigelow.org; demerson@bigelow.org Jake Beam; David Emerson No Environmental Aquatic Coastal Marine Sediment sediment 51.4666 4.071 1416437804 2913964 859 53 1279 95 SRX6412348 Unrestricted 13.22 Metagenome 3300028057 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_18SEP2017_LD1 DOE Joint Genome Institute (JGI) 3300028057 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 89682161 199364 79 83 101 120 SRX5345919 Unrestricted 15.68 Metagenome 3300026234 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Oklahoma, USA - DC3-110 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026234 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 33527485 98242 74 15 119 35 SRX2770436 Unrestricted 0.0 Metagenome 3300042885 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME02Jun2010-rr0130 DOE Joint Genome Institute (JGI) 3300042885 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 817003645 1244243 230 96 324 109 Unrestricted 31.81 Metagenome 3300031799 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21 DOE Joint Genome Institute (JGI) 3300031799 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1244126197 2956494 335 14 537 28 SRX5820283 Unrestricted 11.88 Metagenome 3300002849 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZCTH 0001 University of Sao Paulo, Virginia Bioinformatics Institute 3300002849 Metagenome Analysis SoapDeNovo released per JGI data release policy No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal No Engineered Lab enrichment Aerobic media Defined media Unclassified Compost -23.651072 -46.620675 10833971 23782 0 0 1 0 0.0 Metagenome 3300022405 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Lake Baghdad, Rottnest Island (WA - Australia) - LBBM3 JM111 AGRF 3300022405 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.994794 115.523776 41362930 81229 31 1 55 1 0.0 Metagenome 3300025018 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025018 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 444872977 895736 407 4 684 10 SRX3200017 Unrestricted 0.0 Metagenome 3300005254 *Microbiome Permanent Draft Enrichment culture microbial communities from Rutgers university that are MTBE-degrading Enrichment culture microbial communities from rom New York Harbor, USA that are MTBE-degrading - MTBE-NYH (New York Harbor Sulfidogenic) MetaG DOE Joint Genome Institute (JGI) 3300005254 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes haggblom@aesop.rutgers.edu, haggblom@rutgers.edu Max M Haggblom, Max M. Haggblom No Environmental Aquatic Harbor Marine Sediment Enrichment culture 40.67 -74.01 1049136929 2038254 678 3 1109 7 SRX2782493 Unrestricted 0.0 Metagenome 3300025065 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from Cariaco Basin, Caribbean Sea - 26B_WHOI_OMZ_CsCl (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025065 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 10.847 -65.114 129410472 216998 51 0 63 0 SRX2929475 Unrestricted 0.0 Metagenome 3300049053 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - C22_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049053 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 575363262 1018486 517 33 988 59 Unrestricted 0.0 Metagenome 3300028645 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_1 DOE Joint Genome Institute (JGI) 3300028645 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 248973287 676011 324 67 552 113 SRX5281133 Unrestricted 0.0 Metagenome 3300012840 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - DID2937_E24_Lignin MG DOE Joint Genome Institute (JGI) 3300012840 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Grasslands Soil Unclassified soil 43.073 -89.4011 102584925 137408 157 1 257 1 SRX3564786 Unrestricted 0.0 Metagenome 3300002252 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP16-MA 3300002252 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300049761 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_A_4_control DOE Joint Genome Institute (JGI) 3300049761 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 125888608 312156 314 27 586 42 Unrestricted 11.99 Metagenome 3300000206 *Microbiome Permanent Draft Lotic microbial communities from Mississippi River at two locations in the state of Minnesota Lotic microbial communities from Mississippi River at two locations in the state of Minnesota, sample from River Site 1, Mississippi Headwaters University of Minnesota 3300000206 Metagenome Analysis No Yes gibb0098@umn.edu Brian Gibbens No Environmental Aquatic Lotic Freshwater Unclassified Lotic 47.349634 -95.182806 276241763 1014764 597 54 1073 75 0.0 Metagenome 3300042256 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA MBR feed microbial communities from membrane bioreactor in Denver, Colorado, USA - FD_D10_02 DOE Joint Genome Institute (JGI) 3300042256 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Wastewater Mine water Industrial wastewater Produced water MBR feed 39.7823 -104.9101 54549892 86858 76 1 102 1 Unrestricted 153.84 Metagenome 3300027676 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027676 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 454783276 1029312 266 42 496 59 SRX3312093 Unrestricted 0.0 Metagenome 3300070383 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_013-M-20180712-COMP-DNA1 3300070383 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 35602013 110141 79 11 153 10 0.0 Metagenome 3300027411 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A2-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300027411 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 27817246 90325 98 1 194 3 SRX1990518 Unrestricted 0.0 Metagenome 3300038561 *Microbiome Permanent Draft Lettuce associated viral communities from produce distribution center in Michigan, USA Iceberg lettuce associated viral communities from produce distribution center in Michigan, USA - FI15 Michigan State University 3300038561 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Iceberg lettuce 516978 766 4 0 10 1 SRX1427005 0.0 Metagenome 3300039076 *Microbiome Permanent Draft Freshwater lake viral communities from Lake Michigan, near Chicago, USA Freshwater lake viral communities from Lake Michigan, near Chicago, USA- Wilmette140624.1V Genewiz Inc., Loyola University 3300039076 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 42.0791 -87.683 40470359 86920 36 0 49 0 0.0 Metagenome 3300000926 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 M2 DOE Joint Genome Institute (JGI) 3300000926 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 101007401 179891 94 0 143 0 SRX3311653 Unrestricted 0.0 Metagenome 3300069420 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_026-M-20170711-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069420 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 6124133 18633 36 7 54 9 0.0 Metagenome 2166559007 *Microbiome Permanent Draft Microbial communities from the Atlantic Ocean and human feces from France, grouped together for a comparative study Human fecal microbial communities from France, for comparison studies - Human1 (F1-S 0939) 454 Life Sciences 2166559007 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Host-associated Mammals: Human Large intestine Digestive system Fecal Environmental and host-associated 45.460129 4.495284 10564750 21130 15 0 37 0 0.0 Metagenome 2170459005 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm 454 Life Sciences 2170459005 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.804241 -0.372114 463799864 1266059 348 45 650 47 0.0 Metagenome 3300003583 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI073_LV_10m_DNA DOE Joint Genome Institute (JGI) 3300003583 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 221599436 453241 292 21 479 26 Unrestricted 0.0 Metagenome 3300041051 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - T5D2 IDBA-UD 100x Baseclear 3300041051 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 202059384 325908 165 11 289 10 0.0 Metagenome 7000000427 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 763435843 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000427 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 5827263 11900 0 0 0 0 SRX024081, SRX098542 0.0 Metagenome 3300027122 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A2-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300027122 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 42559772 133004 122 3 223 4 SRX1990512 Unrestricted 0.0 Metagenome 3300025710 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-6-D (SPAdes) DOE Joint Genome Institute (JGI) 3300025710 Metagenome Analysis spades v. 3.11.1 Yes Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 460322598 968621 353 45 475 62 SRX2568494 Unrestricted 0.0 Metagenome 3300037140 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 P3 50-54 DOE Joint Genome Institute (JGI) 3300037140 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0466 877535600 1621690 280 6 469 12 SRX8853768 Unrestricted 11.62 Metagenome 3300021117 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 21JUL2009 epilimnion DOE Joint Genome Institute (JGI) 3300021117 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 55463388 119048 58 44 69 51 Unrestricted 0.0 Metagenome 3300010341 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2 DOE Joint Genome Institute (JGI) 3300010341 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Wetlands Soil Unclassified Bog forest soil 51.62 -128.09 1731263930 3369782 1001 29 1730 50 SRX2521852 Unrestricted 0.0 Metagenome 3300030079 *Microbiome Permanent Draft Human fecal microbial communities from healthy and liver cirrhosis patients in Hangzhou, China Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-30_Run3 Zhejiang University 3300030079 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 30.0 120.0 13007699 25019 26 0 41 0 0.0 Metagenome 3300009929 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R4 University of New South Wales 3300009929 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 87958149 154772 71 2 99 3 0.0 Metagenome 3300023227 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1234 DOE Joint Genome Institute (JGI) 3300023227 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 103396553 209059 99 3 146 10 SRX4397420 Unrestricted 28.99 Metagenome 3300041763 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_490 MetaG AgResearch, New Zealand, Mosgeil 3300041763 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1549881274 2904843 47 3 175 3 0.0 Metagenome 3300036645 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPN1-1-X2 DOE Joint Genome Institute (JGI) 3300036645 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3569 19.0502 236723712 369285 82 9 109 20 SRX8861427 Unrestricted 43.88 Metagenome 3300040328 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_015-O-20170620-COMP-DNA1 Battelle Memorial Institute 3300040328 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 4855818 15194 55 19 80 33 0.0 Metagenome 3300035381 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_3c_20_8 mgh University of Alberta 3300035381 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified wastewater 56.7292 -111.3885 69590355 86750 29 0 43 0 0.0 Metagenome 3300024043 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant dump, University of Wisconsin, Madison, United States - 3A150A (version 2) DOE Joint Genome Institute (JGI) 3300024043 Metagenome Analysis spades v. 3.11.1 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0758 -89.4125 95608571 140011 68 4 79 6 SRX4821909 Unrestricted 0.0 Metagenome 3300027865 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_21 DOE Joint Genome Institute (JGI) 3300027865 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Inlet Marine Unclassified seawater 50.0528611 -123.8211389 1396127036 3239733 926 35 1693 49 SRX5243949 Unrestricted 9.33 Metagenome 3300025434 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_16_10 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025434 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 166767120 350531 107 10 186 20 SRX3003645 Unrestricted 0.0 Metagenome 3300021506 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-1-2_MG DOE Joint Genome Institute (JGI) 3300021506 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.0114 -110.5956 237083223 525249 319 4 565 4 SRX3982320 Unrestricted 9.78 Metagenome 3300039151 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Unnamed Lake 13, Antarctica - #426 Australian Centre for Ecogenomics 3300039151 Metagenome Analysis Spades v. 3.13.0 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.473717 78.2546 371462904 699657 172 46 260 94 0.0 Metagenome 3300023036 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-201 DOE Joint Genome Institute (JGI) 3300023036 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Unclassified Plant litter Unclassified leaf litter 40.2526 -123.026 96942570 186929 59 32 74 60 SRX4392060 Unrestricted 43.16 Metagenome 3300017723 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.N DOE Joint Genome Institute (JGI) 3300017723 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 199576629 491378 8 0 13 1 SRX7205406 Unrestricted 89.53 Metagenome 3300022432 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1OPP3 JM6 AGRF 3300022432 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 41729678 74227 36 0 51 0 0.0 Metagenome 3300029164 *Microbiome Permanent Draft Infant fecal microbial communities from Pittsburgh, USA Infant fecal microbial communities from Pittsburgh, USA - NECEvent2014_8_3 Banfield Lab, University of California, Berkeley 3300029164 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant fecal 40.4308 -79.9598 34188089 44137 56 0 69 0 0.0 Metagenome 3300024963 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 27_LOW6 (SPAdes) DOE Joint Genome Institute (JGI) 3300024963 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 87293168 147054 40 0 62 0 SRX2720162 Unrestricted 0.0 Metagenome 3300035230 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P4_June_2011_500m DOE Joint Genome Institute (JGI) 3300035230 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 48.65 -126.6666 747195496 1884764 527 60 950 91 SRX8189516 Unrestricted 16.96 Metagenome 3300028714 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196 DOE Joint Genome Institute (JGI) 3300028714 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040586 -106.94868265 548817932 1550356 428 19 875 23 SRX5355400 Unrestricted 10.08 Metagenome 3300014500 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, USA - P5_8mM MetaG DOE Joint Genome Institute (JGI) 3300014500 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 87714780 95899 9 15 6 20 SRX3780038 Unrestricted 85.98 Metagenome 3300049726 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 E3 40-44 DOE Joint Genome Institute (JGI) 3300049726 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.0466 465880478 727812 261 3 417 0 Restricted 13.35 Metagenome 3300027818 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027818 Metagenome Analysis spades v. 3.11.1 Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0991 -99.1044 1045729064 2233699 693 3 1215 8 SRX2753789 Unrestricted 0.0 Metagenome 3300043497 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 013-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043497 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9216 -106.9524 627365741 1603924 669 24 1227 41 Unrestricted 8.83 Metagenome 3300025550 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025550 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.197227 -122.010124 163946878 333587 203 4 324 3 SRX2581001 Unrestricted 0.0 Metagenome 3300005592 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV89 DOE Joint Genome Institute (JGI) 3300005592 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 522956291 1434783 575 5 1070 4 SRX2781883 Unrestricted 0.0 Metagenome 3300040729 *Microbiome Draft Metagenome of enrichment culture MWH-Canal-Kol6 Mixed culture microbial communities from University of Innsbruck, Austria - Polynucleobacter yangtzensis MWH-Canal-Kol6-Polyn University of Innsbruck 3300040729 Metagenome Analysis SPAdes v. 3.13.1 released by JGI data releasing policy No Yes martin.hahn@uibk.ac.at Martin Hahn No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Mixed culture 47.848543 13.3429 2051029 2131 1 0 1 0 0.0 Metagenome 3300007356 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159611913 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007356 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 126726456 161507 96 0 140 0 0.0 Metagenome 3300031992 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031992 Metagenome Analysis spades v. 3.12.0 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -40.3794 175.6106 3326530175 6418778 4053 51 6193 63 SRX5785005, SRX5785004 Unrestricted 0.0 Metagenome 3300021445 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG DOE Joint Genome Institute (JGI) 3300021445 Metagenome Analysis spades v. 3.11.1-check Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 41.1613 -96.6752 1637703606 4129734 1210 55 2356 82 SRX3787728 Unrestricted 7.24 Metagenome 3300044486 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - WIN1-9-19-19 DOE Joint Genome Institute (JGI) 3300044486 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.4111 -120.5991 392763044 1019717 362 70 621 105 Restricted 6.49 Metagenome 3300050541 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf microbial communities from Olympic Peninsula, Washington, USA - D0_RHK1_4 DOE Joint Genome Institute (JGI) 3300050541 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Alder tree leaf 48.154 -124.211 358279480 519539 130 102 203 159 Unrestricted 40.61 Metagenome 3300007648 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764588959 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007648 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 137564721 178133 69 1 77 1 0.0 Metagenome 3300050479 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - E18W0 DOE Joint Genome Institute (JGI) 3300050479 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 113911675 212406 177 46 366 71 Unrestricted 20.67 Metagenome 3300011800 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00718 Weill Cornell Medical College 3300011800 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.72 -74.0 38081572 60093 32 0 38 0 SRX822685 0.0 Metagenome 3300045038 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-604 Genome Quebec 3300045038 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 55.217558 -119.091379 1201482156 2812090 450 69 772 121 0.0 Metagenome 3300001682 *Microbiome Permanent Draft Activated sludge microbial communities from the University of Illinois, USA, from bioreactors seeded with cattle waste Activated sludge microbial communities from the University of Illinois, USA - seeded with cattle waste 3300001682 Metagenome Analysis IDBA-UD released per JGI data releasing policy No Yes jrsieber@illinois.edu Jessica Sieber No Engineered Wastewater Dissolved organics (anaerobic) Nutrient removal Activated sludge Activated sludge 40.103885 -88.225087 627196950 888030 1523 3 2200 0 0.0 Metagenome 3300069412 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_003-O-20170619-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069412 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 115288780 320153 158 19 290 28 0.0 Metagenome 3300014677 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00240 Weill Cornell Medical College 3300014677 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.79 -73.96 31491505 55262 27 0 42 0 SRX822219 0.0 Metagenome 3300000767 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 25JUL2007 hypolimnion DOE Joint Genome Institute (JGI) 3300000767 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300006845 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Bulk soil microbial communities from a Populus tree surrounding site in Tennessee, USA - Soil MetaG P. deltoides SBSDD5 DOE Joint Genome Institute (JGI) 3300006845 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Environmental Terrestrial Tree plantation Soil Unclassified Bulk soil 35.8443 -83.9607 5908119456 14891109 3005 57 5000 121 SRX2840906 Unrestricted 0.0 Metagenome 3300013918 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01519 Weill Cornell Medical College 3300013918 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.99 13890993 24560 18 0 26 0 SRX823395 0.0 Metagenome 3300009786 *Microbiome Permanent Draft Marine microbial communities from western Arctic Ocean Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 DOE Joint Genome Institute (JGI) 3300009786 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh Yes 30271971 Environmental Aquatic Oceanic Marine Unclassified Marine 77.0991 -150.2252 2234464223 4238549 1331 223 2158 383 SRX2997311 Unrestricted 0.0 Metagenome 3300028131 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 53D DOE Joint Genome Institute (JGI) 3300028131 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 327267811 707643 222 47 280 66 SRX5171864 Unrestricted 22.93 Metagenome 7000000593 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 158499257 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000593 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 75484544 150591 0 0 0 0 0.0 Metagenome 3300013965 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - sediment SCG87 University of British Columbia 3300013965 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Sediment Marine 301443 922 0 0 2 0 SRX143196 0.0 Metagenome 3300013657 *Microbiome Permanent Draft Insectivorous bat viral communities from France Insectivorous bat viral communities from France - b8 Institut Pasteur, Paris, France 3300013657 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Multiple organs Multiple systems Pooled tissues Bat tissue 10949662 19219 9 7 24 9 SRX590194 0.0 Metagenome 3300070950 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_021-O-20180712-COMP-DNA1 3300070950 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 58419266 143129 78 12 154 15 0.0 Metagenome 3300043080 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver proximal colon microbial communities from Maple Ridge, British Columbia, Canada - Beaver2Prox.Colon1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043080 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Proximal colon proximal colon 49.18 -122.54 297803608 584482 584 22 948 32 SRX8345782 Unrestricted 25.85 Metagenome 3300038582 *Microbiome Permanent Draft Marine microbial communities from North Atlantic, Canada Marine microbial communities from North Atlantic, Canada - 394795 National Research Council, Canada Plant Biotechnology Institute 3300038582 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 46.707 -48.785 23383689 55004 45 8 67 13 0.0 Metagenome 3300012502 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.yng.040610 DOE Joint Genome Institute (JGI) 3300012502 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 138338423 358387 258 24 519 46 SRX3527490 Unrestricted 0.0 Metagenome 3300006796 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_13_40cm DOE Joint Genome Institute (JGI) 3300006796 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2589494781 5813674 1934 71 3274 103 SRX2727604 Unrestricted 0.0 Metagenome 3300011436 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT642_2 DOE Joint Genome Institute (JGI) 3300011436 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.978 -107.0026 448405609 1051642 488 27 975 51 SRX3539427 Unrestricted 0.0 Metagenome 3300049899 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume viral communities from Gulf of California, Mexico - CTD-FK190211-15-2002m-0.03 v DOE Joint Genome Institute (JGI) 3300049899 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 27.01123 -111.40458 314993963 679125 92 12 183 16 Restricted 117.92 Metagenome 3300042166 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from diseased Eunicella gazella from Algarve, Portugal - EG15N v2 Molecular Research LP (MR DNA) 3300042166 Metagenome Analysis Metawrap workflow v. 1.0.8 released by JGI data releasing policy Yes Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 43135085 58782 9 5 22 5 0.0 Metagenome 3300042639 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A26 University of California, Davis 3300042639 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 342808735 936472 389 5 707 6 0.0 Metagenome 3300032023 *Microbiome Permanent Draft Microbial communities from the deep biosphere Hydrothermal vent fluid microbial communities from New Bay of Prony, New Caledonia - Prony28 re-assembly Marine Biological Laboratory 3300032023 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid -22.3609167 166.8799667 78068154 194633 83 4 141 4 0.0 Metagenome 3300031861 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 3416 DOE Joint Genome Institute (JGI) 3300031861 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.7468 -122.0193 1237785708 2911512 902 174 1512 290 SRX6423005 Unrestricted 18.4 Metagenome 3300000789 *Microbiome Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Iowa, Native Prairie soil v6 (version 6) DOE Joint Genome Institute (JGI) 3300000789 Metagenome Analysis Artifact filter, partition at k=32, assemble with Velvet at k19-45, Minimus2 released based on JGI ITS Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.0042816 -77.1012173 6.2 1503004606 4175735 10 4 29 14 Unrestricted 0.0 Metagenome 3300025722 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_100m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025722 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 520298432 1040144 347 19 479 32 Unrestricted 0.0 Metagenome 3300035362 *Microbiome Permanent Draft Gut microbial communities from Plutella xylostella in Fujian, Fuzhou, China Midgut microbial communities from Plutella xylostella in Fujian, Fuzhou, China - larva Fujian Academy of Agricultural Sciences 3300035362 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Arthropoda: Insects Midgut Digestive system Unclassified Midgut 26.08 119.28 20860494 32736 0 14 0 5 SRX547140 0.0 Metagenome 3300027110 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001 (SPAdes) DOE Joint Genome Institute (JGI) 3300027110 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 169905167 393111 42 4 62 13 SRX2014326 Unrestricted 0.0 Metagenome 7000000119 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159369152 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000119 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 96895722 174843 0 0 0 0 0.0 Metagenome 3300026668 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN614 (SPAdes) DOE Joint Genome Institute (JGI) 3300026668 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 727008 2696 7 0 14 0 SRX1986974 Unrestricted 0.0 Metagenome 3300024430 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20 DOE Joint Genome Institute (JGI) 3300024430 Metagenome Analysis spades v. 3.11.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.305 -116.2547 705051987 1739013 856 19 1599 30 SRX4366994, SRX4366995 Unrestricted 0.0 Metagenome 3300040745 *Microbiome Permanent Draft Groundwater microbial communities from well in Rigaud, Quebec, Canada Groundwater microbial communities from well in Rigaud, Quebec, Canada - V10P01 University of Quebec 3300040745 Metagenome Analysis IDBA v. 3 No Yes karine.villeneuve12@gmail.com Karine villeneuve No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 45.4794 -74.302 467371534 1863154 2049 14 3840 44 0.0 Metagenome 3300043104 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver proximal colon microbial communities from Maple Ridge, British Columbia, Canada - Beaver1Prox.Colon1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043104 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Proximal colon proximal colon 49.18 -122.54 279088766 538715 609 10 981 13 SRX8344627 Unrestricted 31.21 Metagenome 3300022351 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL3WBGP1 JM40 AGRF 3300022351 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996531 115.533257 38675739 71875 29 0 44 1 0.0 Metagenome 3300032364 *Microbiome Permanent Draft Lake microbial communities from Canada Sediment microbial communities from the Atlantic Maritime Ecozone, Canada - top sediment 07-025 Genome Quebec 3300032364 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Sediment 43.6497 -65.7118 492191470 1194030 471 6 887 7 0.0 Metagenome 3300017681 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_07NOV2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017681 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 180484500 377410 257 144 387 224 SRX3927695 Unrestricted 6.27 Metagenome 3300040986 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - SI40MA (SPAdes) Columbia University 3300040986 Metagenome Analysis spades v. 3.11.1 released by Simon Roux Yes Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Inlet Marine Unclassified marine 48.6 -123.5 4164202 6723 0 0 0 0 0.0 Metagenome 3300038744 *Microbiome Draft Marine sediment microbial community from Mar Menor, Spain Marine sediment microbial community from Mar Menor, Spain - S72 FISABIO - Public Health 3300038744 Metagenome Analysis Metaspades v. 3.13.1 released by JGI data releasing policy No Yes borja.aldeguer@ua.es Borja Aldeguer No Environmental Aquatic Coastal Marine Sediment Marine sediment 37.67303698 -0.78374087 31612471 68337 34 3 63 3 0.0 Metagenome 3300049655 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_B_0_drought DOE Joint Genome Institute (JGI) 3300049655 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 214290889 444116 305 20 633 59 Unrestricted 11.35 Metagenome 3300008509 *Microbiome Permanent Draft Freshwater microbial communities from catchments in Singapore Freshwater microbial communities from catchments in Singapore - Site BB Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300008509 Metagenome Analysis clc genomics workbench 8 released per JGI data release policy No Yes erinscm@nus.edu.sg Charmaine Ng No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 1.3 103.8 118806421 304046 88 15 172 31 0.0 Metagenome 3300025663 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_135m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025663 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 407961737 831199 334 19 482 41 Unrestricted 0.0 Metagenome 3300028043 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0.5_MG DOE Joint Genome Institute (JGI) 3300028043 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.7 121.4042 1459838432 3842285 975 5 1793 12 SRX5244057 Unrestricted 8.7 Metagenome 3300037848 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site2_nosalt_MVIII_2 DOE Joint Genome Institute (JGI) 3300037848 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Tidal flats microbial mat 20.7452 58.6625 619711532 1229721 292 0 475 1 SRX9169882 Unrestricted 10.95 Metagenome 3300043523 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield ecozone, Canada - Lake 06-313 Genome Quebec 3300043523 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.337978 -90.271499 1192539785 2959920 466 122 852 269 0.0 Metagenome 3300057041 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E2L_30_32 DOE Joint Genome Institute (JGI) 3300057041 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9934494 -81.4907807 744585810 1266077 380 3 668 5 Unrestricted 13.93 Metagenome 3300005307 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila putrida female 1 gut Cornell University 3300005307 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy No Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila putrida female adult gut 43.025606 -77.572811 69947223 192573 68 14 152 28 0.0 Metagenome 3300054979 *Microbiome Permanent Draft Soil microbial communities from various environments and locations in the USA Soil microbial communities from pasture in Falmouth, Massachusetts, USA - PETF_TOP DOE Joint Genome Institute (JGI) 3300054979 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nancy.hess@pnnl.gov Nancy Hess No Environmental Terrestrial Pasture Soil Unclassified Soil 41.5532 -70.6398 2238897914 3823085 681 40 1155 58 Unrestricted 14.75 Metagenome 3300034013 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034 DOE Joint Genome Institute (JGI) 3300034013 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 862274915 1630824 462 59 680 95 SRX7621637 Unrestricted 20.75 Metagenome 3300002416 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP08-I1 3300002416 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300049047 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - D14_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049047 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 149434264 381200 282 10 525 21 Unrestricted 0.0 Metagenome 3300028963 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 507_4M Beijing Genomics Institute (BGI) 3300028963 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 38342499 44235 45 0 63 0 ERX491156 0.0 Metagenome 3300029254 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011697-35 Beijing Genomics Institute (BGI) 3300029254 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 208753495 288061 168 0 255 0 0.0 Metagenome 3300000388 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from University of Liverpool, UK - Illumina_500pg_assembled University of Liverpool 3300000388 Metagenome Analysis Meta-IDBA released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 14611315 32856 143 0 249 0 0.0 Metagenome 3300039261 *Microbiome Permanent Draft Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada - diffuse fluids ECf11 Dalhousie University 3300039261 Metagenome Analysis Megahit v. 1.2.8 released by JGI data releasing policy No Yes smurdock@uvic.ca Sheryl Murdock No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Marine 47.9631 -129.0917 560534790 1286088 422 60 676 106 0.0 Metagenome 3300031468 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Sorghum-adapted microbial communities enriched on wild type (WT) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - WT_Day14_6 DOE Joint Genome Institute (JGI) 3300031468 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 172355575 244684 217 0 238 0 SRX5661264 Unrestricted 138.86 Metagenome 3300028806 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1 DOE Joint Genome Institute (JGI) 3300028806 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 1147073261 2472586 585 146 883 239 SRX5355863 Unrestricted 0.0 Metagenome 3300039450 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 DOE Joint Genome Institute (JGI) 3300039450 Metagenome Analysis MEGAHIT v. 1.2.7 Released on PI's request No Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Host-associated Plants Unclassified Roots Unclassified plant roots -19.2822 -43.5936 1457147341 2632050 1137 74 2153 123 SRX4939666 0.0 Metagenome 3300053685 *Microbiome Permanent Draft Soil microbial communities from various environments and locations in the USA Soil microbial communities from forest in Warm Springs Reservation, Oregon, USA - WSU3_TOP DOE Joint Genome Institute (JGI) 3300053685 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nancy.hess@pnnl.gov Nancy Hess No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 44.6663 -121.7191 2130504617 3585942 432 87 704 133 Unrestricted 16.98 Metagenome 3300020463 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050) CEA Genoscope 3300020463 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -32.7806 -87.0917 1440682867 3076063 537 5 1097 12 0.0 Metagenome 3300042773 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N1_30_40 NMDC pilot DOE Joint Genome Institute (JGI) 3300042773 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380143 -119.2723688 112053099 273880 135 0 268 0 SRX2523197 0.0 Metagenome 3300049989 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Leaf microbial communities from farm grass in Deerfield, Massachusetts, United States - Ryegrass_Phyllosphere_Drought1 (version 2) DOE Joint Genome Institute (JGI) 3300049989 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 42.4788 -72.5788 899637257 1715989 377 234 596 328 Restricted 0.0 Metagenome 3300070654 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_003-O-20190715-COMP-DNA1 3300070654 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 27422803 87358 68 10 128 22 0.0 Metagenome 3300031415 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLSG.R2 DOE Joint Genome Institute (JGI) 3300031415 Metagenome Analysis spades v. 3.12.0 Yes Yes icelab@berkeley.edu Steven Lindow No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 37.8864 -122.2981 206528709 293419 121 1 153 5 SRX5658508 Unrestricted 54.91 Metagenome 3300026744 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day87 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026744 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 39.849 -81.036 6235909 7609 4 0 9 0 SRX2996526 Unrestricted 0.0 Metagenome 3300050356 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - YNP_Soil_4 DOE Joint Genome Institute (JGI) 3300050356 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Adjacent soil Adjacent soil 44.7986 -110.7207 458496081 679700 149 51 186 83 Unrestricted 157.79 Metagenome 3300043389 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 255-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043389 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9633 -107.0293 419482111 1234105 549 44 1010 71 Unrestricted 7.55 Metagenome 3300012535 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100777 University of Pennsylvania 3300012535 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3445591 4700 3 4 7 6 SRX756076 0.0 Metagenome 3300069639 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_001-M-20140708-COMP-DNA1 re-annotation Argonne National Laboratory 3300069639 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 3954687 12215 19 2 41 6 ERX2133992 0.0 Metagenome 3300042121 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0515D_E14_082716_2398 DOE Joint Genome Institute (JGI) 3300042121 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.9457 -103.6985 109829314 286836 187 8 298 12 Unrestricted 7.54 Metagenome 3300024292 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 37D DOE Joint Genome Institute (JGI) 3300024292 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 243598386 473420 164 8 226 10 SRX4459160 Unrestricted 18.25 Metagenome 3300003345 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_DNA DOE Joint Genome Institute (JGI) 3300003345 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 220405582 433124 317 12 520 18 SRX2569216 Unrestricted 0.0 Metagenome 3300004250 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 106_HOW12 DOE Joint Genome Institute (JGI) 3300004250 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 73153840 130166 58 0 104 0 SRX2721179 Unrestricted 0.0 Metagenome 3300014842 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human oral microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002466-99 Beijing Genomics Institute (BGI) 3300014842 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Saliva Host-associated 39.911947 116.4156125 5713769 14641 14 4 34 3 0.0 Metagenome 3300027186 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027186 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 107246522 248091 117 37 145 64 SRX2753547 Unrestricted 0.0 Metagenome 3300013279 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100445 University of Pennsylvania 3300013279 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 35567505 80678 32 1 57 1 SRX756553 0.0 Metagenome 3300012148 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ024 MetaG DOE Joint Genome Institute (JGI) 3300012148 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.873 -74.5218 190789961 342244 162 15 224 40 SRX3539458 Unrestricted 0.0 Metagenome 3300036963 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - AD1 38 III DOE Joint Genome Institute (JGI) 3300036963 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 500406857 919030 531 2 852 3 SRX8362066 Unrestricted 25.44 Metagenome 3300007541 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG DOE Joint Genome Institute (JGI) 3300007541 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 38.9819 -76.3716 540256142 1221266 0 0 0 0 SRX2935246, SRX3362802, SRX3362803 Unrestricted 0.0 Metagenome 3300008482 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 159490532 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008482 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 115628221 145181 107 0 145 0 0.0 Metagenome 3300040614 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Temperate deciduous broadleaf forest soil microbial communities from Baltimore, USA - 011_R1_022417 University of Maryland 3300040614 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate deciduous broadleaf forest soil 39.34751667 -76.62043333 1477645 4996 16 3 22 2 0.0 Metagenome 3300070545 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_001-M-20200713-COMP-DNA1 Battelle Memorial Institute 3300070545 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 32.977665 -87.432705 4.59-4.85 23784905 75070 68 12 110 24 0.0 Metagenome 3300004461 *Microbiome Permanent Draft Marine viral communities from Newfoundland, Canada Marine viral communities from Newfoundland, Canada BC-2 Yale University 3300004461 Metagenome Analysis CLC Bio released per JGI data release policy No Yes olga.zhaxybayeva@dartmouth.edu Olga Zhaxybayeva No Environmental Aquatic Coastal Marine Unclassified Marine 47.593411 -52.885466 247786272 644817 18 2 30 1 0.0 Metagenome 3300014259 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D1 DOE Joint Genome Institute (JGI) 3300014259 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.052479 -121.7687 292498330 711378 417 4 758 7 SRX7181212 Unrestricted 0.0 Metagenome 3300003270 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_17_M020 DOE Joint Genome Institute (JGI) 3300003270 Metagenome Analysis Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 83719072 193118 188 20 305 29 SRX2570680 Unrestricted 0.0 Metagenome 3300043016 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - Beaver4Rectum1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043016 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Rectum rectum 49.18 -122.54 127120851 233395 320 7 461 13 SRX8346146 Unrestricted 75.51 Metagenome 3300011542 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00825 Weill Cornell Medical College 3300011542 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.99 20985016 25315 9 0 11 0 SRX822791 0.0 Metagenome 3300039037 *Microbiome Permanent Draft Sediment and seawater microbial communities from hydrothermal vent in Taiwan, China Seawater microbial communities from hydrothermal vent in Taiwan, China - W2 Xiamen university 3300039037 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Coastal Marine Unclassified Seawater 24.83414 121.96191 62373017 114482 89 0 112 0 0.0 Metagenome 3300019719 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FRT_4-5_MG DOE Joint Genome Institute (JGI) 3300019719 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 111267631 274662 215 18 411 17 SRX3982713 Unrestricted 3.59 Metagenome 3300052908 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Wyoming, USA - R_C3_S1 DOE Joint Genome Institute (JGI) 3300052908 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 41.02584 -106.63696 206023291 384580 247 41 493 60 Unrestricted 24.95 Metagenome 3300064804 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 615 in Smith, Alberta, Canada - S00JY_0716 Microbiome Insights 3300064804 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 55.07270132 -113.545927 39594716 59922 31 1 71 3 0.0 Metagenome 3300025209 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP1493 (SPAdes) DOE Joint Genome Institute (JGI) 3300025209 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -25.49 -179.52 65886724 133380 62 34 90 40 SRX1982444 Unrestricted 0.0 Metagenome 3300036806 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in California, United States - CAS_7 DOE Joint Genome Institute (JGI) 3300036806 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil 37.0 -122.2 3081447505 4970970 779 34 1188 66 SRX8386223 Unrestricted 12.37 Metagenome 3300045414 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-508 Genome Quebec 3300045414 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 51.83278 -120.388941 1112442597 2540528 597 207 895 355 0.0 Metagenome 3300020268 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B000000477 (ERX556113-ERR599107) CEA Genoscope 3300020268 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -34.8477 18.1136 240409334 629401 250 21 412 47 0.0 Metagenome 3300028629 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Leu DOE Joint Genome Institute (JGI) 3300028629 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 284289374 454242 199 0 271 0 SRX5281910 Unrestricted 26.75 Metagenome 3300008160 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human subgingival plaque microbial communities from NIH, USA - visit 2, subject 763496533 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008160 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human 39.0042816 -77.1012173 135082819 244048 111 0 165 2 0.0 Metagenome 3300055448 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.19C.12 SIP fraction DOE Joint Genome Institute (JGI) 3300055448 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 242725503 447521 130 84 268 124 Unrestricted 12.14 Metagenome 3300020215 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_5 DOE Joint Genome Institute (JGI) 3300020215 Metagenome Analysis spades v. 3.10.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.3049 -116.2547 1224300329 2884978 852 39 1470 63 SRX3936366 Unrestricted 17.32 Metagenome 3300032107 *Microbiome Permanent Draft Microbial communities from the deep biosphere Subseafloor sediment microbial communities from the Andaman Sea, Indian Ocean - Site17A_21mbsf re-assembly The Marine Biological Laboratory 3300032107 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Sediment Marine Unclassified Sediment 11.2811 93.1 326880540 906954 176 8 322 19 SRX986762, SRX342186 0.0 Metagenome 3300002825 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A1-11 DOE Joint Genome Institute (JGI) 3300002825 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 132600 451 20 0 32 0 SRX1991131 Unrestricted 0.0 Metagenome 3300009710 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC113_MetaG DOE Joint Genome Institute (JGI) 3300009710 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 22.28 114.17 556179612 1079559 706 9 1073 10 SRX2164574 Unrestricted 0.0 Metagenome 3300043367 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 289-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043367 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9798 -107.0366 536257778 1493469 478 38 912 56 Unrestricted 6.73 Metagenome 3300059359 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.18C.7 SIP fraction DOE Joint Genome Institute (JGI) 3300059359 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 23513859 51748 24 4 39 3 Unrestricted 15.1 Metagenome 3300025929 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025929 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Agricultural soil 42.4774 -85.451 3483434663 7842026 1156 127 2118 221 SRX2745056 Unrestricted 0.0 Metagenome 3300070406 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_004-M-20200731-COMP-DNA1 3300070406 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 32084020 96461 97 6 155 5 0.0 Metagenome 3300027637 *Microbiome Permanent Draft Agricultural soil microbial communities from Utah and Georgia to study Nitrogen management Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027637 Metagenome Analysis spades v. 3.11.1 Yes Yes jeanette.norton@usu.edu Jeanette Norton No Environmental Terrestrial Agricultural land Soil Unclassified Agricultural soil 41.7655 -111.8143 397142788 866668 459 19 820 27 SRX2923095 Unrestricted 0.0 Metagenome 3300000982 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP2968 DOE Joint Genome Institute (JGI) 3300000982 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 32.08 -17.26 13515488 29332 36 24 69 36 SRX1981961 Unrestricted 0.0 Metagenome 2149837002 *Microbiome Permanent Draft Marine microbial communities from the Baltic Sea Marine microbial communities from the Baltic Sea Royal Institute of Technology 2149837002 Metagenome Analysis consed released per JGI data release policy No Yes daniel.herlemann@gmx.de Daniel Herlemann No Environmental Aquatic Oceanic Marine Unclassified Marine 59.888937 24.847412 37658923 77672 125 48 97 0 0.0 Metagenome 3300012467 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100687 University of Pennsylvania 3300012467 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14181606 30882 8 0 12 0 SRX756407 0.0 Metagenome 2156126008 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Estuarine microbial communities from Columbia River, CM, sample from South Channel ETM site, CRE-ETM-794-796-2nd University of South Carolina 2156126008 Metagenome Analysis Newbler 2.5.3 using the default parameters released per JGI data release policy No Yes mariyasmit@hotmail.com Mariya Smit, Mariya W. Smit No Environmental Aquatic Intertidal zone Marine Estuary Marine estuarine 46.201 -123.821 14 25218411 65418 113 21 99 0 0.0 Metagenome 3300007913 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 764083206 replicate 2 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007913 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 4854051 10497 14 0 19 2 SRX024089 0.0 Metagenome 3300030735 *Microbiome Permanent Draft Wheat crown rot disease influences the structure and diversity of wheat-associated microbiome Rhizosphere soil microbial communities in a healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 4 University of Western Sydney 3300030735 Metagenome Analysis MEGAHIT v. 1.0 released by JGI data releasing policy No Yes h.liu2@westernsydney.edu.au hongwei liu No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soils -27.565194 151.864444 101471011 240722 157 11 334 20 0.0 Metagenome 3300053752 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FL_01 DOE Joint Genome Institute (JGI) 3300053752 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.407926 -82.180036 117673979 189846 11 1 11 9 Restricted 214.09 Metagenome 3300038409 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Sediment microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_North_1 DOE Joint Genome Institute (JGI) 3300038409 Metagenome Analysis metaspades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Wetlands Marine Sediment sediment 26.6774 -80.3753 1293274889 2009875 574 15 973 22 SRX9405752 Unrestricted 15.98 Metagenome 3300043788 *Microbiome Permanent Draft Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA - SWaN 13 years plot 13 DOE Joint Genome Institute (JGI) 3300043788 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes luizdomeignoz@gmail.com Luiz Domeignoz Horta No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 42.303 -72.1228 1888888490 3058184 373 29 548 46 SRX15792991 Unrestricted 11.84 Metagenome 3300004815 *Microbiome Permanent Draft Salt marsh microbial communities from Little Sippewissett, Woods Hole, MA that are anoxygenic and photosynthetic Anoxygenic and phototrophic microbial communities from Little Sippewissett salt marsh, Woods Hole, MA - SCQ2a Marine Biological Laboratory 3300004815 Metagenome Analysis CLC released per JGI data release policy No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Intertidal zone Marine Salt marsh marine 41.5758508 -70.635807 9777636 20740 21 0 25 0 0.0 Metagenome 3300013312 *Microbiome Permanent Draft Solar panel surface microbial communities from Valencia, Spain Solar panel surface microbial communities from Valencia, Spain - panel 3 Lifesequencing S.L. 3300013312 Metagenome Analysis Abyss released by JGI data releasing policy No Yes manuel.porcar@uv.es Manuel Porcar No Engineered Built environment Unclassified Solar panel Unclassified Solar panel surfaces 39.4561165 -0.3545661 123257707 242711 115 35 175 78 0.0 Metagenome 3300002162 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Incubations 002-21A DOE Joint Genome Institute (JGI) 3300002162 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.28381 -156.5985 203781626 505289 344 5 569 12 SRX1990913 Unrestricted 0.0 Metagenome 3300009434 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 DOE Joint Genome Institute (JGI) 3300009434 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 616932352 1135910 527 98 784 151 SRX2999686 Unrestricted 0.0 Metagenome 3300046792 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 soil DOE Joint Genome Institute (JGI) 3300046792 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121117 -123.269633 5.38 899023472 1458270 309 31 530 35 Unrestricted 12.83 Metagenome 3300005164 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgLAC DOE Joint Genome Institute (JGI) 3300005164 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 464145533 1528435 610 13 1263 32 SRX2521238 Unrestricted 0.0 Metagenome 3300044303 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T92 S DOE Joint Genome Institute (JGI) 3300044303 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7745 -64.3726 364282435 917615 40 0 92 1 Unrestricted 50.48 Metagenome 3300032516 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0 DOE Joint Genome Institute (JGI) 3300032516 Metagenome Analysis spades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5119 -110.3577 5868570844 12301179 2688 32 4491 51 SRX6379695 Unrestricted 11.63 Metagenome 3300002480 *Microbiome Permanent Draft Fumarolic subsurface microbial communities from Tramway Ridge at Mt. Erebus, Antarctica for carbon cycling studies in geothermal environments Geothermal fumarole subsurface microbial communities from Mt. Erebus, Antarctica - 1A2E DOE Joint Genome Institute (JGI) 3300002480 Metagenome Analysis revert back to private per Christa Yes Yes twoyke@lbl.gov, craig.herbold@microbial-ecology.net Tanja Woyke, Craig Herbold No Environmental Terrestrial Fumaroles Volcanic Unclassified Fumarolic subsurface -77.5182 167.1113 2494345 4180 0 0 7 0 SRX2555438 Unrestricted 0.0 Metagenome 3300039863 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_001-M-38-38-20131024-GEN-DNA1 Argonne National Laboratory 3300039863 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 26708484 71114 63 3 123 2 ERX2133990 0.0 Metagenome 3300001568 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP1374 DOE Joint Genome Institute (JGI) 3300001568 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -39.23 135.19 27294377 68561 32 1 88 0 SRX1982559 Unrestricted 0.0 Metagenome 3300038615 *Microbiome Permanent Draft Seawater microbial communities from the Baltic Proper 10 km east of Oland, Sweden Seawater microbial communities from the Baltic Proper 10 km east of Oland, Sweden - LMO_120717 Royal Institute of Technology 3300038615 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 26667648 Environmental Aquatic Unclassified Marine Unclassified Seawater 56.93085 17.060667 8227574 21825 26 2 37 2 SRX1050749 0.0 Metagenome 3300019365 *Microbiome Permanent Draft Mouse fecal microbial communities from Athens, Georgia, USA Mouse fecal microbial communities from Athens, Georgia, USA - 8A1C Georgia Genomics Facility 3300019365 Metagenome Analysis megahit released by JGI data releasing policy No Yes ptu@live.unc.edu Pengcheng Tu No Host-associated Mammals Large intestine Digestive system Fecal mouse fecal 33.9519 -83.3576 28857011 33741 67 0 75 0 0.0 Metagenome 3300024057 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_9 DOE Joint Genome Institute (JGI) 3300024057 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Inlet Marine Unclassified seawater 50.0528611 -123.8211389 852238246 2102500 713 36 1244 76 SRX4096998 Unrestricted 7.96 Metagenome 3300000892 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine sediment microbial community from Union City, CA, USA - Pond 2C Sediment 2 DOE Joint Genome Institute (JGI) 3300000892 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Intertidal zone Marine Salt pond sediment Enviromental 37.569017 -122.102433 67889334 182976 125 1 231 6 SRX3304875 Unrestricted 0.0 Metagenome 3300059758 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1548A-02 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059758 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2319 -123.8812 189782489 390666 135 6 197 9 SRX2753717 Unrestricted 0.0 Metagenome 3300009550 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome DOE Joint Genome Institute (JGI) 3300009550 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine -17.283 2.9768 2047983115 3932292 1071 1451 1418 2099 SRX2998260 Unrestricted 0.0 Metagenome 3300012489 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Unplanted soil (control) microbial communities from North Carolina - M.Soil.5.yng.040610 DOE Joint Genome Institute (JGI) 3300012489 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Environmental Terrestrial Unclassified Soil Unclassified unplanted soil 35.9076 -79.0506 97416919 260757 229 15 460 29 SRX3527492 Unrestricted 0.0 Metagenome 3300049782 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S53_C_D89 hydrophobic DOE Joint Genome Institute (JGI) 3300049782 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 274232309 439975 186 0 251 0 Unrestricted 22.26 Metagenome 3300029592 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35979 Beijing Genomics Institute (BGI) 3300029592 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 143136796 179352 123 0 174 0 0.0 Metagenome 3300023077 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S076-202R-6 DOE Joint Genome Institute (JGI) 3300023077 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 236186181 649103 481 35 960 48 SRX4801449 Unrestricted 8.01 Metagenome 3300061123 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIF8SW PMA-treated Jet Propulsion Laboratory, California Institute of Technology 3300061123 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 15899435 24113 25 4 20 9 SRX2249351, SRX2249348, SRX3808517, SRX3808506 0.0 Metagenome 3300001515 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from Kilo Moana, Pacific Ocean, of black smokers Hydrothermal vent plume microbial communities from Kilo Moana, Pacific Ocean, of black smokers 3300001515 Metagenome Analysis MetaVelvet 1.2.02 released by JGI data releasing policy No Yes akarthik@umich.edu Karthik Anantharaman No Environmental Aquatic Hydrothermal vents Marine Black smokers Hydrothermal vent plume -20.064428 -176.171974 177519424 250868 8 5 43 3 0.0 Metagenome 3300035048 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B4.4_Sample4.Rodeo4.Well667 DOE Joint Genome Institute (JGI) 3300035048 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 50068740 81319 55 0 103 0 SRX8353771 Unrestricted 179.21 Metagenome 3300011784 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00327 Weill Cornell Medical College 3300011784 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.78 -73.97 33639229 58540 13 0 24 0 SRX822300 0.0 Metagenome 3300038668 *Microbiome Draft Saline water viral communities of the coast of Qinghai Lake, Qinghai province, China Saline water viral communities of the coast of Qinghai Lake, Qinghai province, China - QHH10 Beijing Novogene Bioinformatics Technology Co., Ltd 3300038668 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes 1054738805@qq.com Chengxiang Gu No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 36.74646012 99.79378213 65472788 157242 107 14 275 19 0.0 Metagenome 3300053754 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FL_02 DOE Joint Genome Institute (JGI) 3300053754 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.407926 -82.180036 75040360 119940 4 3 9 5 Restricted 394.21 Metagenome 3300054090 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_6_40 re-annotation DOE Joint Genome Institute (JGI) 3300054090 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 409018996 888894 194 4 351 9 SRX3002038 0.0 Metagenome 3300038949 *Microbiome Permanent Draft Activated sludge microbial communities from anaerobic digester at WWTP from various locations in Denmark Activated sludge microbial communities from anaerobic digester at WWTP in Randers, Denmark - SA-RHK-531 Aalborg University 3300038949 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified Activated sludge 56.454004 10.070742 257831543 460843 267 0 476 0 0.0 Metagenome 3300070785 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_010-O-20210104-COMP-DNA1 3300070785 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 363659 1246 5 0 8 0 0.0 Metagenome 3300003106 *Microbiome Permanent Draft Groundwater microbial communities from Oak Ridge Integrated Field Research Center, Tennessee, that are pristine and uranium contaminated Groundwater from Oak Ridge Integrated Field Research Center, Tennessee, USA DOE Joint Genome Institute (JGI) 3300003106 Metagenome Analysis Paracel Genome Assembler released based on JGI ITS No Yes jzhou@ou.edu Zhou, Jizhong Yes 20182523 Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.159 -84.341 9502117 13643 3 1 3 0 Unrestricted 0.0 Metagenome 3300044859 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME08Mar2019-rr0919 DOE Joint Genome Institute (JGI) 3300044859 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1036483101 1542336 315 89 396 121 Unrestricted 19.07 Metagenome 3300042730 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - Dsc1_a13.6 Re-assembly Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042730 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1237 -89.1404 57265324 60253 9 3 13 12 SRX5234787 0.0 Metagenome 3300007781 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human right retroauricular crease microbial communities from NIH, USA - visit 2, subject 15961191 replicate 2 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007781 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 11126071 18297 9 0 12 4 SRX024618, SRX024617 0.0 Metagenome 3300000680 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 32 DOE Joint Genome Institute (JGI) 3300000680 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 5465220 18425 29 0 48 0 SRX4340710 Unrestricted 0.0 Metagenome 3300035649 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS58_3 University of Hohenheim 3300035649 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 71464735 100331 68 0 122 0 0.0 Metagenome 3300046794 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere DOE Joint Genome Institute (JGI) 3300046794 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.588 -123.194 694332121 1125469 306 79 510 124 Unrestricted 22.14 Metagenome 3300005162 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgLAB DOE Joint Genome Institute (JGI) 3300005162 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 448920844 1471891 607 18 1236 46 SRX2521235 Unrestricted 0.0 Metagenome 3300001347 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic Microbial community sample from North Sea - COGITO 998_met_06 DOE Joint Genome Institute (JGI) 3300001347 Metagenome Analysis Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Pelagic marine 54.184167 7.9 541663764 1071712 453 101 866 154 SRX802143 Unrestricted 0.0 Metagenome 3300001916 *Microbiome Permanent Draft Contaminated subsurface sediment microbial communities from Dusseldorf, Germany, analyzing toluene degradation Contaminated subsurface sediment microbial communities from Dusseldorf, Germany, analyzing toluene degradation - Fos_Dus_1 3300001916 Metagenome Analysis de novo assembly algorithm of CLC Genomics Workbench released by JGI data releasing policy No Yes emnabouhajja@gmail.com Emna Bouhajja No Environmental Terrestrial Sediment Geologic Unclassified Contaminated subsurface sediment 51.21 6.46 25337 32 0 0 0 0 0.0 Metagenome 3300056903 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F1P_60_62 DOE Joint Genome Institute (JGI) 3300056903 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9544076 -81.67361068 1799138250 2562313 702 2 1073 1 Unrestricted 15.68 Metagenome 3300039446 *Microbiome Permanent Draft Terrestrial soil microbial communities from rice fields in China Terrestrial soil microbial communities from rice field in Suqian, Jiangsu, China - 7JSQ Shanghai Personal Biotechnology Co., Ltd. 3300039446 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes xjzhang68@sjtu.edu.cn Xiaojun Zhang No Environmental Terrestrial Paddy field/soil Soil Unclassified Terrestrial soil 117.98 33.74 2407379862 5919717 1283 10 2603 18 0.0 Metagenome 3300024919 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 46_HOW7 (SPAdes) DOE Joint Genome Institute (JGI) 3300024919 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 51891481 79572 34 1 49 7 SRX2720580 Unrestricted 0.0 Metagenome 3300035516 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver proximal colon microbial communities from Maple Ridge, British Columbia, Canada - Beaver5Prox.Colon1 DOE Joint Genome Institute (JGI) 3300035516 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Proximal colon proximal colon 49.18 -122.54 1299951340 2474746 1294 30 2022 46 SRX8346448 Unrestricted 9.75 Metagenome 3300060455 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210617_21_17 DOE Joint Genome Institute (JGI) 3300060455 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 343253536 493361 184 48 227 63 Unrestricted 45.1 Metagenome 3300013314 *Microbiome Permanent Draft Moss microbial communities from three moss species from boreal forest in Fairbanks, AK, USA Moss microbial communities from three moss species from boreal forest in Fairbanks, Alaska, USA Reanalysis University of Colorado 3300013314 Metagenome Analysis MEGAHIT v1.0.6-3 released by Hannah Holland-Moritz Yes Yes noah.fierer@colorado.edu Noah Fierer No Host-associated Plants Unclassified Phyllosphere Unclassified Moss associated 64.8591667 -147.8247222 512754133 534758 42 54 33 31 0.0 Metagenome 3300002164 *Microbiome Permanent Draft Biogas fermentation microbial communities from biogas plants in Germany Biogas fermentation microbial communities from Germany - Plant 1 DNA2 DOE Joint Genome Institute (JGI) 3300002164 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes asczyrba@techfak.uni-bielefeld.de Alexander Sczyrba Yes 27462367 Engineered Bioreactor Digestate Anaerobic Unclassified Biogas fermentantion 52.0385 8.4956 7.7 501478208 999834 1159 10 1898 13 SRX1598042 Unrestricted 0.0 Metagenome 3300009432 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome DOE Joint Genome Institute (JGI) 3300009432 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 79.0225 -9.5247 2484071518 4440662 1077 1190 1384 1790 SRX2997752 Unrestricted 0.0 Metagenome 3300012007 *Microbiome Permanent Draft Ruminant gut microbial communities from various locations in USA Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1009 University of Missouri 3300012007 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen 41.314168 -105.584589 421047043 793036 192 9 450 10 SRX331704 0.0 Metagenome 3300003757 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_1000_biof DOE Joint Genome Institute (JGI) 3300003757 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 revert back to private per Christa Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 256997933 400666 234 7 362 13 SRX2576714, SRX2576713, SRX2576712, SRX2576711, SRX2576715 Unrestricted 0.0 Metagenome 3300030449 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Sweden Biosolids microbial communities from sewage treatment plant in Sweden - SWESTP27 - Henriksdal-digested 139 University of Gothenburg 3300030449 Metagenome Analysis Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified biosolids 59.310676 18.108437 237854487 406379 191 3 297 3 0.0 Metagenome 3300000894 *Microbiome Draft Wetland microbial communities from Twitchell Island in the Sacramento Delta Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site L1 Bulk DOE Joint Genome Institute (JGI) 3300000894 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes stringe@lbl.gov, sgtringe@lbl.gov Susannah Tringe Yes 25991679 Environmental Aquatic Wetlands Marine Sediment Wetland 38.106796 -121.646457 70007605 199148 257 9 548 7 Unrestricted 0.0 Metagenome 3300056866 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E2L_9_10 DOE Joint Genome Institute (JGI) 3300056866 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9934494 -81.4907807 799355034 1374180 414 9 774 14 Unrestricted 12.87 Metagenome 3300065655 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 828a in Etizkom, Alberta, Canada - S00JY_0162 Microbiome Insights 3300065655 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.3635388 -111.0815252 216006329 318433 83 3 168 3 0.0 Metagenome 3300004777 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Jul07 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300004777 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 482706900 1312127 238 207 392 660 SRX2565279 Unrestricted 0.0 Metagenome 3300011782 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01402 Weill Cornell Medical College 3300011782 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.59 -73.97 19433375 33972 16 0 27 0 SRX823342 0.0 Metagenome 3300051203 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Leeds, Wisconsin, USA - 123_777_WI_DR_0cm_c3_T0_16O DOE Joint Genome Institute (JGI) 3300051203 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 43.30485 -89.3309 524426735 935995 246 3 472 2 Restricted 15.99 Metagenome 3300032048 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 32315 DOE Joint Genome Institute (JGI) 3300032048 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Coastal Marine Unclassified seawater 36.7468 -122.0193 1418888154 3381150 955 191 1623 344 SRX6423918 Unrestricted 18.71 Metagenome 3300049784 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Woodchip biofilm microbial communities from lab scale WBR in Cornell University, Ithaca, NY, USA - rep3_drw_p2_w6 DOE Joint Genome Institute (JGI) 3300049784 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 610047921 1255242 439 23 803 33 Unrestricted 9.57 Metagenome 3300029594 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36116 Beijing Genomics Institute (BGI) 3300029594 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 161337021 199835 128 0 179 1 0.0 Metagenome 3300037823 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18B_5_12_9 mgh University of Alberta 3300037823 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 71080459 88569 27 1 39 3 0.0 Metagenome 3300043548 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Great Miami River, Cincinnati, Ohio, USA - greatmiami_2019_sw_WHONDRS-S19S_0099 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043548 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 39.2386 -84.7123 853311407 1352099 304 146 373 189 Unrestricted 18.84 Metagenome 3300024294 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 78D DOE Joint Genome Institute (JGI) 3300024294 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 287974489 552726 180 39 236 67 SRX4473706 Unrestricted 20.06 Metagenome 3300028028 *Microbiome Permanent Draft Leachate and groundwater microbial communities from a municipal landfill and adjacent aquifer in Southern Ontario, Canada Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 296A DOE Joint Genome Institute (JGI) 3300028028 Metagenome Analysis spades v. 3.11.1 Yes Yes laura.hug@uwaterloo.ca Laura Hug No Engineered Solid waste Unclassified Landfill Unclassified landfill leachate 43.442 -80.577 475545597 864354 526 3 845 9 SRX5256783 Unrestricted 34.53 Metagenome 3300014844 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00408 Weill Cornell Medical College 3300014844 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.69 -73.98 14759747 24832 11 0 17 1 SRX822378 0.0 Metagenome 3300004001 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWC_D1 DOE Joint Genome Institute (JGI) 3300004001 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.015041 -122.501831 858411544 2295030 832 17 1627 38 SRX7142756 Unrestricted 0.0 Metagenome 3300026360 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-B DOE Joint Genome Institute (JGI) 3300026360 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 157454613 419781 233 16 444 23 SRX4803891 Unrestricted 9.48 Metagenome 3300026742 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A5w-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026742 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 22511624 74522 105 7 168 9 SRX1991256 Unrestricted 0.0 Metagenome 3300024473 *Microbiome Permanent Draft Acidic stream sediment microbial community, Parys Moutain abandoned copper mine Acidic stream sediment microbial communities from copper mine in Parys Mountain, Anglesey, Wales, United Kingdom - extreme acidophiles Baltic Federal University 3300024473 Metagenome Analysis SPAdes v. 3.10.0 released by JGI data releasing policy Yes Yes stepan.toshchakov@gmail.com Stepan Toshchakov No Engineered Wastewater Mine water Industrial wastewater Sediment sediment 53.39 -4.345966 200151926 265893 106 7 103 9 0.0 Metagenome 7000000253 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 160158126 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000253 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 32142083 61104 0 0 0 0 0.0 Metagenome 3300008484 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 765074482 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008484 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 11049664 19027 10 0 9 4 SRX024183 0.0 Metagenome 3300040612 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_006-O-20140707-COMP-DNA1 Argonne National Laboratory 3300040612 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 1501218 4734 27 4 54 7 ERX2134058 0.0 Metagenome 3300043135 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5WT15 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043135 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 24133339 65987 107 12 189 24 SRX8379537 Unrestricted 16.9 Metagenome 3300045412 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Towuti Lake, South Sulawesi, Indonesia - Towuti_0_1m_2015 DOE Joint Genome Institute (JGI) 3300045412 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.7 121.4 442655308 780310 275 21 380 38 Unrestricted 27.81 Metagenome 3300003517 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Antarctic Ocean - Station_363 -- 3.0 um J. Craig Venter Institute (JCVI) 3300003517 Metagenome Analysis No Yes jhoffman@jcvi.org, r.cavicchioli@unsw.edu.au Hoffman, Jeff, Rick Cavicchioli Yes 21124488 Environmental Aquatic Oceanic Marine Photic zone Freshwater -60.00007 141.23353 86297686 253569 66 86 154 160 0.0 Metagenome 3300021075 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L373-20m DOE Joint Genome Institute (JGI) 3300021075 Metagenome Analysis spades v. 3.10.1 Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.745 -93.799 790832124 1583817 624 5 1002 12 SRX3984688 Unrestricted 16.78 Metagenome 3300041719 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_15 MetaG AgResearch, New Zealand, Mosgeil 3300041719 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1276393144 2529804 361 17 1095 38 0.0 Metagenome 3300012936 *Microbiome Permanent Draft Marine microbial communities from the Costa Rica Dome and surrounding waters Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG DOE Joint Genome Institute (JGI) 3300012936 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes msaito@whoi.edu Mak Saito No Environmental Aquatic Oceanic Marine Photic zone surface seawater 9.5025 -92.3286 2426714544 5502410 1458 196 2606 324 SRX3375198 Unrestricted 0.0 Metagenome 3300056675 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - APS1_4W_T0 DOE Joint Genome Institute (JGI) 3300056675 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 1870483686 2526313 639 114 799 143 Unrestricted 24.33 Metagenome 3300022209 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_13 DOE Joint Genome Institute (JGI) 3300022209 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Sediment Marine Unclassified sediment 38.03 -122.37 818976559 1741468 537 2 900 5 SRX4053217 Unrestricted 8.7 Metagenome 3300044695 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Aug2002-ww0327 DOE Joint Genome Institute (JGI) 3300044695 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 983684404 1553070 343 19 408 35 Unrestricted 19.85 Metagenome 3300011544 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00688 Weill Cornell Medical College 3300011544 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.8 -73.96 20665921 27184 13 0 15 0 SRX822655 0.0 Metagenome 3300064802 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 595 in Falher, Alberta, Canada - S00JY_0719 Microbiome Insights 3300064802 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 55.45243753 -117.122471 216320013 301873 72 2 115 2 0.0 Metagenome 3300035107 *Microbiome Permanent Draft Marine planktonic microbial communities from Bay of Bengal, Indian Ocean Marine planktonic microbial communities from Bay of Bengal, Indian Ocean - 3P (SRX5580386-SRR8790589) Nanyang Technological University 3300035107 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released by JGI data releasing policy Yes Yes flauro@ntu.edu.sg Federico Lauro No Environmental Aquatic Unclassified Marine Unclassified Marine planktonic 5.78 89.11 1015661541 2283823 580 351 944 502 0.0 Metagenome 3300031700 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - CB9_surface DOE Joint Genome Institute (JGI) 3300031700 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified Marine 77.9995 -150.0065 566772059 1153310 286 215 522 353 SRX5797826 Unrestricted 20.09 Metagenome 3300070946 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_005-O-20180711-COMP-DNA1 3300070946 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 44088639 130702 81 20 170 36 0.0 Metagenome 3300005825 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.184_BBB Oregon Health and Science University (OHSU) 3300005825 Metagenome Analysis unassembled released per JGI data release policy No Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Unclassified Sediment Unclassified sediment (intertidal) 46.28562 -124.05179 528828095 1132656 764 70 1428 107 0.0 Metagenome 3300000984 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0371 DOE Joint Genome Institute (JGI) 3300000984 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -15.83 -33.41 16939769 41671 58 15 102 28 SRX1983247 Unrestricted 0.0 Metagenome 3300022929 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (version 2) DOE Joint Genome Institute (JGI) 3300022929 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 962194882 1772818 393 82 685 117 SRX4071348 Unrestricted 29.46 Metagenome 3300057170 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2021-0081 DOE Joint Genome Institute (JGI) 3300057170 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.76265 -83.329 579839195 1175458 307 193 527 290 Unrestricted 24.92 Metagenome 3300056821 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - APS4_19W_TP2_16O DOE Joint Genome Institute (JGI) 3300056821 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 1775776363 2295419 412 108 500 159 Unrestricted 31.29 Metagenome 7000000458 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 1, subject 338793263 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000458 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 23391921 36795 0 0 0 0 SRX024104, SRX101407 0.0 Metagenome 3300010296 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNA DOE Joint Genome Institute (JGI) 3300010296 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes bcampb7@clemson.edu Barbara Campbell Yes 29703736 Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 37.0306 -76.0464 527193674 1172406 337 95 563 226 SRX2526853 Unrestricted 0.0 Metagenome 3300022663 *Microbiome Permanent Draft Biofilm microbial communities from lab-scale anaerobic bioreactors in Urbana, Illinois, USA Biofilm microbial community in anthracite-packed bioreactor in Urbana, Illinois, USA - CM2 University of Illinois, Urbana-Champaign 3300022663 Metagenome Analysis SPAdes v. 3.11.1 released by JGI data releasing policy Yes Yes ranmei2@illinois.edu Ran Mei No Engineered Bioreactor Biofilm Anaerobic Unclassified biofilm 40.12 -88.2 500365003 574259 182 3 186 3 0.0 Metagenome 3300011655 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01140 Weill Cornell Medical College 3300011655 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.69 -73.9 36614510 46720 16 0 43 0 SRX823095 0.0 Metagenome 3300008736 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 2.7-0.2um, replicate a Georgia Genomics Facility 3300008736 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 124152451 153522 93 1 126 2 0.0 Metagenome 3300029181 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021318-142 Beijing Genomics Institute (BGI) 3300029181 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 76309728 106227 89 1 137 2 0.0 Metagenome 3300008971 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada T0 (1) T65 (live) enrichments of Methanogenic microbial communities using Athabascan oil sands DE NOVO (2) Shell Corporation 3300008971 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 90418940 354014 95 1 191 11 0.0 Metagenome 3300067161 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210611_15_09 DOE Joint Genome Institute (JGI) 3300067161 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 334741628 516191 166 108 218 142 Unrestricted 0.0 Metagenome 3300023258 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 30-34 DOE Joint Genome Institute (JGI) 3300023258 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0469 253086638 526428 165 8 278 18 SRX4415320, SRX8127809 Unrestricted 0.0 Metagenome 3300028720 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357 DOE Joint Genome Institute (JGI) 3300028720 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92029456 -106.94875775 657725227 1624475 354 5 639 16 SRX5355412 Unrestricted 12.07 Metagenome 3300038360 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI151_2019_mar_200m DOE Joint Genome Institute (JGI) 3300038360 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 483659194 977136 349 4 611 14 SRX9402722 Unrestricted 9.53 Metagenome 3300038742 *Microbiome Permanent Draft Seagrass microbial communities from Seahorse Key, Florida, USA Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 University of Florida 3300038742 Metagenome Analysis Megahit v. 1.1.4 released by JGI data releasing policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Plants Unclassified Rhizome Unclassified seagrass rhizome 29.23 -83.735 97853068 114207 19 1 32 5 0.0 Metagenome 3300011967 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S03-01-D University of California, Los Angeles 3300011967 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 85611266 148075 81 2 124 1 SRX858918 0.0 Metagenome 3300002307 *Microbiome Permanent Draft Lentic enriched actinobacterial communities from dystrophic bog Grosse Fuchskuhle, Brandenburg, Germany Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-C2 co-culture F-D7 DOE Joint Genome Institute (JGI) 3300002307 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes sarilog@gmail.com Sarahi Garcia Yes 29848762 Environmental Aquatic Lentic Freshwater Unclassified Lentic 53.1666 13.0333 197858248 386970 64 20 104 28 SRX3329580 Unrestricted 0.0 Metagenome 3300009619 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3827_250 DOE Joint Genome Institute (JGI) 3300009619 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic 9.7046 -55.3027 91301688 227414 9 5 22 9 SRX2754206 Unrestricted 0.0 Metagenome 3300040357 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_002-O-20170620-COMP-DNA1 Battelle Memorial Institute 3300040357 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 4162777 12964 47 8 68 10 0.0 Metagenome 3300046379 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA032-TGU DOE Joint Genome Institute (JGI) 3300046379 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6772 -83.4783 549967561 1359264 285 28 586 45 Unrestricted 8.88 Metagenome 7000000737 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159814214 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000737 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 107393833 175630 0 0 0 0 0.0 Metagenome 3300005671 *Microbiome Permanent Draft Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia Enhanced biological phosphorus removal bioreactor viral communities from the University of Queensland, Australia - SBR4-V90106 Phage Sequencing University of Queensland 3300005671 Metagenome Analysis CLC 6.0 Released per Connor Skennerton (Sep 15, 2015) No Yes c.skennerton@gmail.com Connor Skennerton No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor lab-scale EBPR bioreactor -27.49999 153.012098 5812671 13648 0 0 2 0 0.0 Metagenome 3300024278 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepC_8d DOE Joint Genome Institute (JGI) 3300024278 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 136228917 288527 159 19 249 23 SRX4547491 Unrestricted 14.91 Metagenome 3300012123 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Georgia, USA - TSGA052 MetaG DOE Joint Genome Institute (JGI) 3300012123 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 32.5456 -82.1225 119208918 213914 21 358 18 710 SRX3539521 Unrestricted 0.0 Metagenome 3300020003 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - L2a2 DOE Joint Genome Institute (JGI) 3300020003 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.8827 -106.9107 313622922 689315 243 12 468 31 SRX3958588, SRX3958587 Unrestricted 0.0 Metagenome 3300000549 *Microbiome Permanent Draft Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled Beijing Genomics Institute (BGI), Lifesequencing S.L. 3300000549 Metagenome Analysis Flash v1.0.3; SOAPdenovo released per JGI data release policy No Yes manuel.fernandez@eez.csic.es Fernandez-Lopez, Manuel No Host-associated Plants Rhizosphere Roots Soil Quercus rhizosphere 36.95744 -3.46336 150678636 462290 728 71 1438 131 0.0 Metagenome 3300026191 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF82A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026191 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 179072455 416171 128 114 232 200 SRX2782313 Unrestricted 0.0 Metagenome 3300029252 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Sweden Biosolids microbial communities from sewage treatment plant in Sweden - SWESTP26 - Henriksdal-digested 138 University of Gothenburg 3300029252 Metagenome Analysis released Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified biosolids 59.310676 18.108437 170702948 290689 134 0 228 1 0.0 Metagenome 3300000616 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 01JUL2008 epilimnion DOE Joint Genome Institute (JGI) 3300000616 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300000471 *Microbiome Permanent Draft Honey bee gut microbial communities from West Haven, Conneticut, USA Honey bee gut microbial communities from West Haven, Conneticut, USA - Snodgrassella SCG AB-598-O11 Broad Institute 3300000471 Metagenome Analysis released per JGI data release policy No Yes philipp.engel@yale.edu Philipp Engel No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Honey bee gut 32.2743 -110.9388 1843378 3797 6 0 4 0 0.0 Metagenome 3300001980 *Microbiome Permanent Draft Sinorhizobium meliloti soil microbial communities from Ontario, Canada, analyzing cobalt utilization Soil-wheat microbial communities from Ontario, Canada 3300001980 Metagenome Analysis released by JGI data releasing policy No Yes finan@mcmaster.ca Turlough Finan No Environmental Terrestrial Unclassified Soil Agricultural land Sinorhizobium meliloti soil 43.64083333 -80.40972222 7.4 399091 402 0 0 0 0 0.0 Metagenome 3300009290 *Microbiome Permanent Draft Estuarine microbial communities from Mobile Bay, Alabama Estuarine microbial communities from Mobile Bay, Alabama - Sample Sm re-assembly with CLC Auburn University 3300009290 Metagenome Analysis CLC 9 De novo released per JGI data release policy No Yes mariitarichard@gmail.com, rmm0025@auburn.edu; mariitarichard@gmail.com Richard Mariita, Richard M. Mariita; Richard Mariita No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 30.4464641 -87.9922684 120997 470 4 0 10 0 0.0 Metagenome 3300052304 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, Minnesota, USA Peat soil microbial communities from Marcell Experimental Forest, Minnesota, USA - QM0306 DOE Joint Genome Institute (JGI) 3300052304 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes amy.zimmerman@pnnl.gov Amy Zimmerman No Environmental Terrestrial Peat Soil Unclassified Peat soil 47.50592299 -93.4542609 3027364156 4646292 667 205 978 300 Unrestricted 16.39 Metagenome 3300070652 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_001-O-20180723-COMP-DNA1 3300070652 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 100211616 289975 152 14 289 26 0.0 Metagenome 3300051801 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - E5W0 DOE Joint Genome Institute (JGI) 3300051801 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 191349396 376301 247 61 459 81 Unrestricted 22.11 Metagenome 3300029849 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37174 Beijing Genomics Institute (BGI) 3300029849 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 134201519 162289 76 0 127 0 0.0 Metagenome 3300009405 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 314m, 2.7-0.2um, replicate a Georgia Genomics Facility 3300009405 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 321164189 403166 175 0 249 0 0.0 Metagenome 3300011989 *Microbiome Permanent Draft Ruminant gut microbial communities from various locations in USA Sheep rumen microbial communities from Wyoming, USA - O_aries_Con_7429 University of Missouri 3300011989 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen 41.314168 -105.584589 249485710 386719 175 3 309 8 SRX331753 0.0 Metagenome 3300045773 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - S1-R3-A DOE Joint Genome Institute (JGI) 3300045773 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3555 19.0475 297525695 696807 206 64 371 86 Unrestricted 6.17 Metagenome 3300042038 *Microbiome Permanent Draft Mollusc gills microbial communities from various hydrothermal vent in Atlantic Ocean Mollusc gills microbial communities from Lucky Strike-Montsegur hydrothermal vent, Atlantic Ocean - BazoSym_LS-MS_2_1048G Max Planck Institute for Marine Microbiology 3300042038 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 37.28806 -32.27557 6521528 9361 2 1 4 1 ERX3367192 0.0 Metagenome 3300037221 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 P-3-M DOE Joint Genome Institute (JGI) 3300037221 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0472 697309400 1326153 282 19 478 41 SRX8148521 Unrestricted 7.93 Metagenome 3300026949 *Microbiome Permanent Draft Fumarolic subsurface microbial communities from Tramway Ridge at Mt. Erebus, Antarctica for carbon cycling studies in geothermal environments Geothermal fumarole subsurface microbial communities from Mt. Erebus, Antarctica - 1A2A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026949 Metagenome Analysis spades v. 3.11.1 Yes Yes craig.herbold@microbial-ecology.net Craig Herbold No Environmental Terrestrial Fumaroles Volcanic Unclassified Fumarolic subsurface -77.5182 167.1113 6723797 11323 4 0 7 0 SRX2555313 Unrestricted 0.0 Metagenome 3300014599 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -PFALL36 Weill Cornell Medical College 3300014599 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -74.0 25159281 34554 11 0 22 0 SRX823461 0.0 Metagenome 3300007025 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T18 (1) (BES), Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300007025 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, nicolas.tsesmetzis@shell.com; ianhead@ncl.ac.uk Nicolas Tsesmetzis, Nicolas Tsesmetzis; Ian Head No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 43606358 81303 53 0 79 1 0.0 Metagenome 3300029097 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 179_12M Beijing Genomics Institute (BGI) 3300029097 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 76110784 97414 62 0 107 0 ERX490969 0.0 Metagenome 3300014301 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D1 DOE Joint Genome Institute (JGI) 3300014301 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jzz0026@lbl.gov; sgtringe@lbl.gov Jinglie Zhou; Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.05246563 -121.76914021 283072386 687922 364 8 669 10 SRX7182415 Unrestricted 0.0 Metagenome 3300001684 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E DOE Joint Genome Institute (JGI) 3300001684 Metagenome Analysis Yes Yes binskeep@montana.edu, binskeep@montana.edu; jim.fredrickson@pnnl.gov William Inskeep, William P. Inskeep; Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.376 -110.69 131966625 297298 70 0 106 0 SRX2553562 Unrestricted 0.0 Metagenome 3300069414 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_029-M-20170621-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069414 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 48504960 147836 98 10 151 19 0.0 Metagenome 3300046778 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from La Jara Creek, Los Alamos, NewMexico, USA - lajara_2019_sw_WHONDRS-S19S_0034 (version 2) DOE Joint Genome Institute (JGI) 3300046778 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 35.868 -106.5233 151999272 257594 266 62 492 86 Unrestricted 0.0 Metagenome 3300037697 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVT2_Jul25_55_v DOE Joint Genome Institute (JGI) 3300037697 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2244486969 3674545 860 12 1472 14 SRX9162542 Unrestricted 14.62 Metagenome 3300038584 *Microbiome Permanent Draft Marine microbial communities from North Atlantic, Canada Marine microbial communities from North Atlantic, Canada - 394911 National Research Council, Canada Plant Biotechnology Institute 3300038584 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 46.431 -48.48 23454131 44298 23 11 33 19 0.0 Metagenome 3300026069 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLC_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026069 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.224518 -122.019257 84500455 222231 177 0 292 4 SRX7188134 Unrestricted 0.0 Metagenome 3300051669 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Schonbrunner Wald, Bavaria, Germany - BW_CL_028D DOE Joint Genome Institute (JGI) 3300051669 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.90607 13.560077 727668318 1736544 360 27 715 52 Unrestricted 8.61 Metagenome 3300040439 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Taiga, AK, USA - HEAL_010-O-20170724-COMP-DNA1 Battelle Memorial Institute 3300040439 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.87569 -149.21334 4120625 13085 28 1 37 0 0.0 Metagenome 3300033417 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155 DOE Joint Genome Institute (JGI) 3300033417 Metagenome Analysis spades v. 3.13.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9888 -108.3994 2768380312 6018597 1678 16 2722 46 SRX7077519 Unrestricted 0.0 Metagenome 3300029578 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P094V1 Beijing Genomics Institute (BGI) 3300029578 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 200781545 258148 155 0 241 0 0.0 Metagenome 3300004246 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 122_LOW14 DOE Joint Genome Institute (JGI) 3300004246 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 45143142 96687 29 0 51 0 SRX2721595 Unrestricted 0.0 Metagenome 3300061535 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Great Basin, Onaqui, Utah, USA - ONAQ_002-M-20210524-comp-1 DOE Joint Genome Institute (JGI) 3300061535 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Shrubland Soil Unclassified Terrestrial soil 40.193323 -112.464547 2521031527 4443185 655 16 1094 25 Unrestricted 19.4 Metagenome 3300026087 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_NADW_ad_2505m_LV_A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026087 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 346982697 750292 331 10 525 21 SRX2775743 Unrestricted 0.0 Metagenome 3300049436 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Woodchip biofilm microbial communities from lab scale WBR in Cornell University, Ithaca, NY, USA - rep1_cs_p2_w0 DOE Joint Genome Institute (JGI) 3300049436 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 1245430986 2467333 816 47 1349 66 Unrestricted 9.43 Metagenome 3300003233 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK07-E DOE Joint Genome Institute (JGI) 3300003233 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 156017 501 25 5 44 5 SRX2575263 Unrestricted 0.0 Metagenome 3300011899 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00500 Weill Cornell Medical College 3300011899 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.86 -73.86 43528357 83232 30 2 57 0 SRX822469 0.0 Metagenome 3300006331 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_1000m University of Hawaii 3300006331 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Aphotic zone Marine 22.75 -158.0 488237571 1104775 666 11 952 17 0.0 Metagenome 3300045166 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_7_D DOE Joint Genome Institute (JGI) 3300045166 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 215283368 249024 131 1 144 2 Unrestricted 100.02 Metagenome 3300041912 *Microbiome Finished Microbial communities from various locations in Russia In situ enrichment of hot spring microbial communities from Arkashin spring, Uzon, Kamchatka - 3811AMC Winogradsky Institute of Microbiology 3300041912 Metagenome Analysis MegaHit v. 1.2.9 released by JGI data releasing policy No Yes kublanov.ilya@gmail.com Ilya V. Kublanov No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring water and sediment 54.5000267 160.0033683 31680280 69274 30 1 23 0 0.0 Metagenome 3300021249 *Microbiome Permanent Draft Oil well rock microbial communities from petroleum reservoir, Carmopolis, SE, Brazil - Rocha G46 - 1053 Oil well rock microbial communities from petroleum reservoir, Carmopolis, SE, Brazil - Rocha G46 - 1053 Federal University of Rio Grande do Norte 3300021249 Metagenome Analysis Geneious released by JGI data releasing policy No Yes lfagnez@ufrnet.br Lucymara Agnez-Lima No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil reservoir rock -10.6453 -36.9891 153354052 564646 1518 0 2797 0 0.0 Metagenome 3300035023 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - C3-14 Autonomous University of Barcelona 3300035023 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 97093118 402824 869 1 1476 2 0.0 Metagenome 3300043102 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - Beaver3Cecum1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043102 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.18 -122.54 118482810 224229 289 2 437 4 SRX8345852 Unrestricted 41.56 Metagenome 3300017433 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_12SEP2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017433 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 238395784 451113 70 82 112 116 SRX3926952 Unrestricted 8.52 Metagenome 3300032362 *Microbiome Permanent Draft STAs constructed wetland biome Wetland sediment microbial communities from Everglades, Florida, USA - STA55-Sample05_1 Combine5 University of Florida 3300032362 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy No Yes ng.hanh24@gmail.com Hanh Nguyen No Environmental Aquatic Wetlands Freshwater Sediment sediment 26.38 -80.51 6.6-8.4 200752869 267412 125 0 199 1 0.0 Metagenome 3300032740 *Microbiome Permanent Draft Understanding the reciprocal impacts of modified plant cell wall and associated microbiome Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R4 DOE Joint Genome Institute (JGI) 3300032740 Metagenome Analysis spades v. 3.13.0 Yes Yes kalluriudayc@ornl.gov Udaya C. Kalluri No Host-associated Plants Stem Phyllosphere Wood/Secondary xylem xylem 32.1348 -81.9657 495280737 495829 78 63 88 111 SRX6873099 Unrestricted 0.0 Metagenome 3300048939 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 002-ER18-SC-SDNA (version 2) DOE Joint Genome Institute (JGI) 3300048939 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9572 -106.9861 964793679 2424757 668 35 1218 61 Unrestricted 0.0 Metagenome 3300001890 *Microbiome Permanent Draft Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils (2) Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils - Sample10 3300001890 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Terrestrial Unclassified Soil Grasslands Grassland soil 23.850674 69.734802 0 0 0 0 0 0 0.0 Metagenome 3300050275 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_31 DOE Joint Genome Institute (JGI) 3300050275 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.492 160.907 382758747 642150 86 37 122 56 SRX18235970 Restricted 33.06 Metagenome 3300014113 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room spacecraft assembly facility microbial communities from NASA Jet Propulsion Laboratory, California, USA - Floor swab, replicate C, treated with PMA SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300014113 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1991 -118.1715 1768720 3606 44 0 12 0 Unrestricted 0.0 Metagenome 3300025351 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica - Antarctic Deep Lake Metagenome 02WF5 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025351 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5627 78.1882 80888066 122327 69 1 78 4 SRX2745745 Unrestricted 0.0 Metagenome 3300000878 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-5 cm-9A)- 1 week illumina University of Tennessee 3300000878 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 155455736 631450 630 18 1043 49 0.0 Metagenome 3300025724 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA7_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025724 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 37.43 138.83 596031820 1041462 481 5 723 8 SRX2338991 Unrestricted 0.0 Metagenome 3300013566 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - seawater enrichment SCG62 University of British Columbia 3300013566 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 1927604 4242 3 0 5 0 SRX143171 0.0 Metagenome 3300035364 *Microbiome Permanent Draft Gut microbial communities from Plutella xylostella in Fujian, Fuzhou, China Gut microbial communities from Plutella xylostella in Fujian, Fuzhou, China - adult gut Fujian Academy of Agricultural Sciences 3300035364 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Gut 26.08 119.28 23917597 29006 2 5 5 2 SRX1421496 0.0 Metagenome 3300022434 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1OPP2 JM116 AGRF 3300022434 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 55027098 99865 46 2 86 4 0.0 Metagenome 3300036473 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Deep Lake round-2 #76 DOE Joint Genome Institute (JGI) 3300036473 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5549 78.1864 95616673 163635 65 2 99 3 SRX8865798 Unrestricted 124.33 Metagenome 3300029162 *Microbiome Permanent Draft Infant fecal microbial communities from Pittsburgh, USA Infant fecal microbial communities from Pittsburgh, USA - NECEvent2014_7_1 Banfield Lab, University of California, Berkeley 3300029162 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant fecal 40.4308 -79.9598 28850424 39834 42 0 41 0 0.0 Metagenome 3300026205 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF89A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026205 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 365727235 781298 199 71 333 115 SRX2782312 Unrestricted 0.0 Metagenome 3300007969 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 159369152 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007969 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 57754211 68916 55 0 70 0 0.0 Metagenome 3300025432 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_20_40 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025432 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 202802245 351741 91 1 136 1 SRX3005972 Unrestricted 0.0 Metagenome 3300001198 *Microbiome Permanent Draft Red biofilm microbial communities from Diamante Lake, Argentina Diamante Lake Red Biofilm INDEAR Instituto de Agrobiotecnologia Rosario 3300001198 Metagenome Analysis released per JGI data release policy No Yes nicorascovan@soilgene.net, nicorasco@hotmail.com Nicolas Rascovan No Environmental Aquatic Alkaline Non-marine Saline and Alkaline Microbial mats Red biofilm -26.034111 -67.039458 11 0 0 0 0 0 0 0.0 Metagenome 3300032230 *Microbiome Finished Functional analysis of rice microbiome Plant endosphere bacterial communities from rice plant in Manipur, India - AM Eurofins Genomics India Pvt Ltd. 3300032230 Metagenome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes malusingha2@gmail.com K.MALABIKA Singha No Host-associated Plants Unclassified Mixed parts Unclassified Rice plant endosphere 24.5 93.5 1462778 1488 1 1 1 1 0.0 Metagenome 3300070873 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_004-M-20190716-COMP-DNA1 Battelle Memorial Institute 3300070873 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12584 -99.253801 6.68-7.81 15656725 46597 59 3 113 8 0.0 Metagenome 3300000170 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 36 08/11/09 135m DOE Joint Genome Institute (JGI) 3300000170 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.5663346 -123.5193257 135508012 274923 85 5 172 9 Unrestricted 0.0 Metagenome 3300012856 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - HID1975I_E11 MG DOE Joint Genome Institute (JGI) 3300012856 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie Yes 29545786 Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 132922478 191507 128 2 187 3 SRX3564708 Unrestricted 0.0 Metagenome 3300007049 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Stylissa sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina ""control"", st32ic" University of New South Wales 3300007049 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au, e.botte@aims.gov.au; n.webster@aims.gov.au Nicole Webster, Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Stylissa sp. -9.828217 150.820517 57902845 146260 33 8 53 10 0.0 Metagenome 3300027503 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_UVDOM_RepA_8d DOE Joint Genome Institute (JGI) 3300027503 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 323689147 606608 241 15 347 20 SRX5245410 Unrestricted 13.08 Metagenome 3300011726 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00720 Weill Cornell Medical College 3300011726 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.71 -74.0 36214971 51820 16 0 25 0 SRX822687 0.0 Metagenome 3300017960 *Microbiome Permanent Draft Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_S_1 metaG DOE Joint Genome Institute (JGI) 3300017960 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes valentine@geol.ucsb.edu David Valentine No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Sediment Hypersaline lake sediment 33.4166 -115.9166 2020333180 4065686 1102 37 1909 69 SRX3905530 Unrestricted 6.58 Metagenome 3300028712 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139 DOE Joint Genome Institute (JGI) 3300028712 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92028116 -106.94891893 506797559 1311438 325 19 638 39 SRX5354617 Unrestricted 12.01 Metagenome 3300026925 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN120 (SPAdes) DOE Joint Genome Institute (JGI) 3300026925 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 39.23550963 -121.2836963 2230485 7760 44 3 72 9 SRX3311728 Unrestricted 0.0 Metagenome 3300026490 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A DOE Joint Genome Institute (JGI) 3300026490 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 218596580 492495 121 19 247 36 SRX4801797 Unrestricted 11.08 Metagenome 3300023168 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S064-202C-5 DOE Joint Genome Institute (JGI) 3300023168 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 200597012 541099 397 21 747 28 SRX4799396 Unrestricted 7.24 Metagenome 3300031994 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 DNA GHGlow gp2 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031994 Metagenome Analysis spades v. 3.12.0 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -40.3794 175.6106 3778982182 7203664 4441 43 6639 57 SRX5784957, SRX5784956 Unrestricted 0.0 Metagenome 3300055078 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_28-s55 day 182 DOE Joint Genome Institute (JGI) 3300055078 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1686080019 2453629 224 162 323 187 Unrestricted 34.81 Metagenome 3300031372 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Leaf surface microbial communities from wheat plants in UC Gill Tract Community Farm, Albany, California, United States - DLSL W.R1 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031372 Metagenome Analysis spades v. 3.12.0 Yes Yes icelab@berkeley.edu Steven Lindow No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf surface 37.8864 -122.2981 435636554 628365 261 1 367 4 SRX5295448, SRX5295447 Unrestricted 0.0 Metagenome 3300005594 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV82 DOE Joint Genome Institute (JGI) 3300005594 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 785077219 2133155 1055 22 1712 44 SRX2781884 Unrestricted 0.0 Metagenome 3300043641 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 251-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043641 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9618 -107.0286 259809102 789920 368 17 692 34 Unrestricted 7.3 Metagenome 3300047173 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Vasterbotten County, Sweden - Sphagnum lindbergii 4OTC_LI_DE DOE Joint Genome Institute (JGI) 3300047173 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.183 19.5578 1352163836 2450804 494 97 826 159 SRX14787541 Unrestricted 9.04 Metagenome 3300021225 *Microbiome Permanent Draft Environmental DNA from pond Freshwater microbial communities from Taiko Pond in Toyama Prefecture, Japan-20161115, 0.02 Toyama Prefectural University 3300021225 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Pond Freshwater Unclassified freshwater 36.70814 137.09773 53647042 129986 18 2 32 5 0.0 Metagenome 3300029480 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001834-56 Beijing Genomics Institute (BGI) 3300029480 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 152818570 182521 114 0 159 0 0.0 Metagenome 3300013628 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100549 University of Pennsylvania 3300013628 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 6548541 14001 16 7 32 9 SRX756205 0.0 Metagenome 3300001353 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic Microbial community sample from North Sea - COGITO 998_met_09 DOE Joint Genome Institute (JGI) 3300001353 Metagenome Analysis Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Pelagic marine 54.184167 7.9 543567980 1171007 430 117 830 180 SRX802074 Unrestricted 0.0 Metagenome 3300023115 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaG (version 2) DOE Joint Genome Institute (JGI) 3300023115 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1093862092 2071974 513 43 704 93 SRX4074070 Unrestricted 26.53 Metagenome 3300007987 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-03 DOE Joint Genome Institute (JGI) 3300007987 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 1007785709 1779984 0 0 0 0 SRX3197862 Unrestricted 0.0 Metagenome 3300030333 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_042 - TARA_R100000152 CEA Genoscope 3300030333 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine 5.9998 73.9067 374002527 795809 25 0 43 0 0.0 Metagenome 3300045256 *Microbiome Permanent Draft Microbial mat bacterial communities from hot springs in Waikite Valley, Taupo Volcanic Zone, New Zealand Microbial mat bacterial communities from hot spring in Waikite Valley, New Zealand - LMW_ETR_NZ_2018_Waikite_6_1b DOE Joint Genome Institute (JGI) 3300045256 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes LMWARD@post.harvard.edu Lewis Ward No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats microbial mat -38.3276 176.3016 1455238108 1908647 571 50 769 74 Unrestricted 21.95 Metagenome 3300060301 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.20C.11 SIP fraction DOE Joint Genome Institute (JGI) 3300060301 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 447912056 862667 216 25 365 44 Unrestricted 0.0 Metagenome 3300069240 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Chase Lake Wetlands, North Dakota, USA - WOOD_042-M-20210712-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069240 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 47.129092 -99.245921 3978393242 9202758 2177 37 3853 97 0.0 Metagenome 3300036919 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5NP15 DOE Joint Genome Institute (JGI) 3300036919 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 521635918 1237829 482 13 808 29 SRX8379426 Unrestricted 6.59 Metagenome 3300028552 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_1 DOE Joint Genome Institute (JGI) 3300028552 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 431593315 994076 340 95 490 152 SRX5281063 Unrestricted 0.0 Metagenome 3300044705 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - CSA4S DOE Joint Genome Institute (JGI) 3300044705 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 1784039521 3218965 577 27 992 41 Unrestricted 12.83 Metagenome 3300021338 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Coastal seawater microbial communities from Marineland, Florida, United States - SWPA TP2 #1 DOE Joint Genome Institute (JGI) 3300021338 Metagenome Analysis spades v. 3.11.1-check Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6703 -81.2145 440483660 711523 274 18 361 21 SRX3985564 Unrestricted 25.07 Metagenome 3300012977 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG DOE Joint Genome Institute (JGI) 3300012977 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 1298558315 3095721 1012 43 1850 79 SRX3205053 Unrestricted 0.54 Metagenome 3300069375 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Ozarks Complex, AL, USA - LENO_063-M-20160829-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069375 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.85388 -88.16122 19335488 60827 64 4 126 5 0.0 Metagenome 3300029825 *Microbiome Permanent Draft Liquor fermentation pit mud microbial communities from Chongqing University, China Liquor fermentation pit mud microbial communities from Luzhou, China - Meta-1-2-440-M Chongqing University 3300029825 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Engineered Bioreactor Unclassified Unclassified Unclassified Fermentation pit mud 28.88 105.45 353665226 531410 295 0 435 0 SRX691264 0.0 Metagenome 3300007897 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit number 3 of subject 158883629 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007897 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 44460031 79628 35 0 57 0 0.0 Metagenome 2015219001 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP2 Nymph Lake 10 v1 DOE Joint Genome Institute (JGI) 2015219001 Metagenome Analysis pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23720654 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.7523206 -110.7253926 3.75 5509727 10385 1 0 1 0 Unrestricted 0.0 Metagenome 3300027124 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepC_8h DOE Joint Genome Institute (JGI) 3300027124 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 91505767 171915 87 3 106 7 SRX5245229 Unrestricted 16.37 Metagenome 3300019763 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_5_MG DOE Joint Genome Institute (JGI) 3300019763 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Microbial mats Freshwater microbial mat 38.7906 -75.1644 316234649 608989 682 11 971 18 SRX3982605 Unrestricted 10.11 Metagenome 3300031884 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18005 DOE Joint Genome Institute (JGI) 3300031884 Metagenome Analysis spades v. 3.12.0 Yes Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.0411 -89.6861 695270798 1295727 410 64 556 81 SRX7891209 Unrestricted 24.77 Metagenome 3300033129 *Microbiome Finished Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju HAN_HAE Chunlab, Inc 3300033129 Metagenome Analysis SPAdes v. 3.8.2 released by JGI data releasing policy No Yes chojc@inha.ac.kr; krmoon518@gmail.com Jang-Cheon Cho; Kira Moon No Environmental Aquatic River Freshwater Unclassified Freshwater 37.5955556 126.817072 18804356 26887 0 0 0 0 0.0 Metagenome 3300044939 *Microbiome Permanent Draft Microbial mat bacterial communities from hot springs in Waikite Valley, Taupo Volcanic Zone, New Zealand Microbial mat bacterial communities from hot spring in Waikite Valley, New Zealand - LMW_ETR_NZ_2018_Waikite_3_2 DOE Joint Genome Institute (JGI) 3300044939 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes LMWARD@post.harvard.edu Lewis Ward No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats microbial mat -38.3276 176.3016 471404357 640261 221 7 277 11 Unrestricted 69.8 Metagenome 3300069596 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Soaproot Saddle, Pacific Southwest, CA, USA - SOAP_004-M-20180530-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069596 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.03337 -119.26219 17943345 56627 66 3 126 3 0.0 Metagenome 3300000525 *Microbiome Permanent Draft Hypersaline microbial communities from Lake Vida, Antarctica Hypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron v1 (version 3) DOE Joint Genome Institute (JGI) 3300000525 Metagenome Analysis released based on JGI ITS Yes Yes alison@dri.edu Alison Murray No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline -77.38861 161.931111 195547006 490882 57 0 110 4 SRX3181484 Unrestricted 0.0 Metagenome 3300017664 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - G13-12 University of Michigan 3300017664 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.39651 -85.40936 21476039 31233 18 0 18 0 0.0 Metagenome 7000000247 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763840445 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000247 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 152766514 278640 0 0 0 0 0.0 Metagenome 3300031219 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #782 DOE Joint Genome Institute (JGI) 3300031219 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4563 78.1898 151722901 279197 84 12 108 19 SRX5649541 Unrestricted 94.73 Metagenome 3300025619 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025619 Metagenome Analysis spades v. 3.11.1 Yes Yes NNIvanova@lbl.gov; janet.jansson@pnnl.gov Natalia Ivanova; Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 343494568 719553 165 9 332 14 SRX1987242 Unrestricted 0.0 Metagenome 3300048859 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD14 DOE Joint Genome Institute (JGI) 3300048859 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.347657 -119.2808 95773987 115472 12 13 16 20 Unrestricted 242.7 Metagenome 3300007762 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 763496533 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007762 Metagenome Analysis SPADES 3.7.0 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 1406367 4670 8 0 16 4 SRX024073 0.0 Metagenome 2222084000 *Microbiome Finished Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - Oil_dispersant_2 Alabama State University 2222084000 Metagenome Analysis GS de novo assembly released per JGI data release policy No Yes panoble@washington.edu Peter A Noble No Environmental Aquatic Oceanic Marine Oil-contaminated Marine 30.15 -88.446 7.8 45956929 130545 88 0 130 0 0.0 Metagenome 3300029416 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 063_3_12_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029416 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 188574142 242556 234 2 320 5 0.0 Metagenome 3300034949 *Microbiome Permanent Draft Ice-wedge Polygon SIP Study Soil microbial communities from ice wedge polygon in Axel Heiberg Island, Nunavut, Canada - Rep_1 Analysis Biotechnology Research Institute, National Research Council of Canada 3300034949 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy No Yes ianina.altshuler@mail.mcgill.ca Ianina Altshuler No Environmental Terrestrial Soil crust Soil Unclassified ice-wedge polygon soil 79.4 -90.7 677030125 1732155 267 4 493 13 0.0 Metagenome 3300025546 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sulfidic aquatic microbial communities from Washburn Spring, Yellowstone National Park, USA - WS (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025546 Metagenome Analysis spades v. 3.11.1 Yes Yes binskeep@montana.edu; jim.fredrickson@pnnl.gov William P. Inskeep; Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Sulfidic aquatic 44.376 -110.69 358108347 564097 252 1 315 0 SRX2553558 Unrestricted 0.0 Metagenome 3300029671 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37190R1 Beijing Genomics Institute (BGI) 3300029671 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 156215130 187284 124 2 192 2 0.0 Metagenome 3300013475 *Microbiome Permanent Draft Fecal viral communites from wild urban brown rats in Berlin, Germany Fecal viral communites from wild urban brown rats in Berlin, Germany - KS/11/0586 Freie University Berlin 3300013475 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 52.529611 13.401343 371807 928 0 0 0 0 SRX616516 0.0 Metagenome 3300070271 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Alaska, USA - DEJU_001-O-20160817-COMP-DNA1 3300070271 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 855263 2810 10 10 23 16 0.0 Metagenome 3300007275 *Microbiome Permanent Draft Microbial Dechlorination and Chlorine Cycle Microbial dechlorinating community enriched from a non-contaminated site (Hamburg, Germany ) University of Tennessee 3300007275 Metagenome Analysis SPAdes released per JGI data release policy No Yes yiyang@utk.edu, yiyang@uga.edu YI Yang No Environmental Terrestrial Unclassified Soil Unclassified soil 53.5653 10.0014 58848434 145893 49 0 116 0 0.0 Metagenome 3300037071 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil viral communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 23_7.5_V_2 DOE Joint Genome Institute (JGI) 3300037071 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1863 -2.2145 482369542 1217774 4 2 7 2 SRX8234720 Unrestricted 24.42 Metagenome 2058419019 *Microbiome Permanent Draft Feline fecal microbial communities from Illinois, USA cat metagenome 9 Research and Testing Laboratory 2058419019 Metagenome Analysis seqman NGEN transcriptome released per JGI data release policy No Yes sdowd@pathogenresearch.org Scot E. Dowd No Host-associated Mammals Large intestine Digestive system Fecal Feline fecal 40.11 -88.4 94870970 282799 192 0 285 0 0.0 Metagenome 3300030694 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from healthy individual in Houston, USA - MG100161 University of Michigan 3300030694 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 29.76 -95.37 27715841 57045 47 0 69 0 0.0 Metagenome 3300005181 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0927_09_40cm DOE Joint Genome Institute (JGI) 3300005181 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2739205376 7753799 2336 55 4098 100 SRX2521034 Unrestricted 0.0 Metagenome 3300034069 *Microbiome Permanent Draft Microbial communities in apple Apple fruit microbial communities from Kearneysville, West Virginia, USA - MCAF USDA-Agricultural Research Service-Eastern Regional Research Center 3300034069 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy Yes Yes mariav@volcani.agri.gov.il Maria Vetcos No Host-associated Plants Carposphere Phyllosphere Unclassified apple fruit 39.3882 -77.8856 945480334 1136031 155 89 195 103 0.0 Metagenome 3300033096 *Microbiome Permanent Draft Mercury Periphyton Project Periphyton microbial communities from the St. Maurice River, Quebec, Canada - S2.A.t0 Genome Quebec 3300033096 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Periphyton Freshwater periphyton 47.893588 -73.756927 361691402 885280 599 199 1059 395 0.0 Metagenome 3300045885 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P12SS CTRL_191116_c DOE Joint Genome Institute (JGI) 3300045885 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 895098384 1390362 263 2 444 2 SRX20650682 Unrestricted 11.98 Metagenome 3300025405 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE13Jul09 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025405 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 149966076 310313 110 30 160 45 SRX2565227 Unrestricted 0.0 Metagenome 3300005849 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - site 2 B6 (SPADES assembly) (version 5) DOE Joint Genome Institute (JGI) 3300005849 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, rmkelly@ncsu.edu Natasha Ivanova, Robert Kelly No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6102 -110.4387 10151071 11299 22 0 11 0 SRX2554348, SRX2554349, SRX2554347, SRX2554354, SRX2554350 Unrestricted 0.0 Metagenome 3300035494 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Tar microbial communities from Pitch Lake, Trinidad and Tobago - PitchLake_TarD_star DOE Joint Genome Institute (JGI) 3300035494 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Tar Asphalt lakes Unclassified tar 10.23 -61.62 468299465 903156 552 1 834 1 SRX8343854 Unrestricted 34.67 Metagenome 3300050025 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 E3 30-34 DOE Joint Genome Institute (JGI) 3300050025 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3532 19.0469 732192550 1055631 229 6 355 5 Restricted 15.08 Metagenome 3300034087 *Microbiome Permanent Draft Amphipod Gut Microbiome Amphipod gut microbial communities in Hirondellea gigas from the Mariana Trench, Sirena Deep, Pacific Ocean - M8 Beijing Novogene Bioinformatics Technology Co., Ltd 3300034087 Metagenome Analysis IDBA v. 1.1.1 released by JGI data releasing policy No Yes alm067@ucsd.edu Alvaro M. Plominsky No Host-associated Arthropoda: Crustaceans Gut Digestive system Unclassified Amphipod gut 12.5075 144.96055556 3455926 4086 3 3 3 5 0.0 Metagenome 3300026232 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Maryland, USA - DAQMD-018 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026232 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 44507229 76308 73 18 89 37 SRX2770398 Unrestricted 0.0 Metagenome 3300020419 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955) CEA Genoscope 3300020419 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 35.5571 -6.5586 1147475900 2795828 426 30 796 52 0.0 Metagenome 3300002254 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP12-MA 3300002254 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300064955 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 744 in Lacombe, Alberta, Canada - S00JY_0039 Microbiome Insights 3300064955 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.27312777 -113.310707 319250837 468927 102 0 158 1 0.0 Metagenome 3300022065 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022065 Metagenome Analysis spades v. 3.11.1-check Yes Yes chenf@umces.edu; bcampb7@clemson.edu Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.12 -75.25 172253638 479863 1 0 3 0 SRX3301140, SRX2838766, SRX3301139 Unrestricted 0.0 Metagenome 3300011761 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00670 Weill Cornell Medical College 3300011761 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.8 -73.94 34597165 55548 21 0 40 0 SRX822637 0.0 Metagenome 3300005252 *Microbiome Permanent Draft Enrichment culture microbial communities from Rutgers university that are MTBE-degrading Enrichment culture microbial communities from Arthur Kill intertidal strait, New Jersey, USA, that are MTBE-degrading - MTBE-AKS1 (Arthur Kill Sulfidogenic replicate 1) MetaG DOE Joint Genome Institute (JGI) 3300005252 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes haggblom@aesop.rutgers.edu, haggblom@rutgers.edu Max M Haggblom, Max M. Haggblom No Environmental Aquatic Intertidal zone Marine Sediment Enrichment culture 40.58 -74.01 684323246 1255546 452 0 738 0 SRX2782481 Unrestricted 0.0 Metagenome 3300025290 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (version 2) DOE Joint Genome Institute (JGI) 3300025290 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 149903946 405988 216 7 429 12 SRX1989930 Unrestricted 0.0 Metagenome 3300028473 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_26JUN2017_LD1 DOE Joint Genome Institute (JGI) 3300028473 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 63556693 119329 10 44 16 77 SRX5345796 Unrestricted 22.47 Metagenome 3300040620 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_005-M-20140618-COMP-DNA1 Argonne National Laboratory 3300040620 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 1452542 4590 24 2 49 4 ERX2134008 0.0 Metagenome 3300017748 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 16 SPOT_SRF_2010-10-21 DOE Joint Genome Institute (JGI) 3300017748 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 321076445 746349 34 14 53 41 SRX7207124, SRX7207123 Unrestricted 0.0 Metagenome 3300008001 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-13 DOE Joint Genome Institute (JGI) 3300008001 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 862623110 1554428 869 23 1441 33 SRX3198187 Unrestricted 0.0 Metagenome 3300037156 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 P3 70-74 DOE Joint Genome Institute (JGI) 3300037156 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0466 750974536 1376391 325 9 504 8 SRX8853767 Unrestricted 12.5 Metagenome 3300059727 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.733 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059727 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 139130789 334394 189 51 297 76 SRX2753574 Unrestricted 0.0 Metagenome 3300028294 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS378 with 0.1UM filter - spades JGI facility at Oak Ridge National Laboratory 3300028294 Metagenome Analysis Spades v. 3.11.1 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 18911870 40906 11 3 13 4 0.0 Metagenome 3300001174 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 DOE Joint Genome Institute (JGI) 3300001174 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 48215566 149811 123 11 228 16 SRX3312067 Unrestricted 0.0 Metagenome 3300033631 *Microbiome Permanent Draft Army ant gut microbial communities Army ant gut microbial communities from Eciton burchelli, Monteverde, Costa Rica - colony MVEbp2 re-assembly University of California, Berkeley 3300033631 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy Yes Yes jar337@drexel.edu; yihu.bnu@gmail.com Jacob Russell; Yi Hu No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Army ant gut 10.3 -84.8 211275346 259952 9 117 24 1040 0.0 Metagenome 3300049477 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Pullman, Washington, USA - southforkpolouse_2019_sed_WHONDRS-S19S_0055 DOE Joint Genome Institute (JGI) 3300049477 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 46.732428 -117.180863 356569169 869437 685 20 1389 35 Unrestricted 10.92 Metagenome 3300038490 *Microbiome Permanent Draft Lettuce associated viral communities from produce distribution center in Michigan, USA Romaine lettuce associated viral communities from produce distribution center in Michigan, USA - DR8 Michigan State University 3300038490 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Romaine lettuce 1100672 1794 7 4 12 10 SRX1433142 0.0 Metagenome 3300005097 *Microbiome Permanent Draft Stylissa massa endosymbiont microbial communities from Guam MiSeq S massa metagenome University of California, San Diego 3300005097 Metagenome Analysis CLC Workbench released per JGI data release policy No Yes abrahim.eg@gmail.com Abrahim El Gamal No Host-associated Porifera Unclassified Unclassified Unclassified Marine benthic sponge Stylissa massa associated 13.4388546 144.8224773 434892778 934525 40 7 85 34 0.0 Metagenome 3300047354 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_170712.NP2 DOE Joint Genome Institute (JGI) 3300047354 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 790404905 1639262 383 95 614 170 Unrestricted 13.26 Metagenome 3300036712 *Microbiome Permanent Draft Rhizosphere microbial communities from salt marsh grasses in Alabama, United States Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA DOE Joint Genome Institute (JGI) 3300036712 Metagenome Analysis metaspades v. 3.13.0 Yes Yes omason@fsu.edu Olivia Mason No Host-associated Plants Rhizosphere Roots Unclassified rhizosphere 30.2619 -88.2383 1357562241 2106307 517 12 823 10 SRX8136189, SRX8136188 Unrestricted 0.0 Metagenome 3300022786 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY17 Version 2 University of New South Wales 3300022786 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 18965673 31469 13 0 26 1 0.0 Metagenome 3300042596 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Calcaritermes temnocephalus from Boquisco, Panama - Ct408 Eurofins MWG Operon 3300042596 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 9.337193 -82.541386 1403250788 1577924 241 25 308 49 0.0 Metagenome 3300046456 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 064-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300046456 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9205 -106.9511 259138587 651692 254 7 502 7 Unrestricted 0.0 Metagenome 3300034191 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B4A4.1 DOE Joint Genome Institute (JGI) 3300034191 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 726903476 1885568 946 2 1604 7 SRX7658952 Unrestricted 7.88 Metagenome 3300009351 *Microbiome Permanent Draft Microbial communities in swimming pool backwashes Microbial communities from sand-filter backwash in Singapore swimming pools - PR-1 Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300009351 Metagenome Analysis megahit released per JGI data release policy Yes Yes martintayqx@gmail.com Martin Tay No Engineered Built environment Unclassified Unclassified Unclassified Swimming pool sandfilter backwash 1.28967 103.85007 533577971 1142777 682 201 1091 299 0.0 Metagenome 3300042240 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D278_1 DOE Joint Genome Institute (JGI) 3300042240 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 162098314 232622 129 6 176 13 Unrestricted 72.77 Metagenome 3300012285 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG DOE Joint Genome Institute (JGI) 3300012285 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.5673 -123.4758 1532033347 3299724 1125 36 2121 66 SRX3372711 Unrestricted 0.0 Metagenome 3300045420 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-631 Genome Quebec 3300045420 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 52.94939 -122.420822 1138578210 2565077 502 131 865 246 0.0 Metagenome 3300005578 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 DOE Joint Genome Institute (JGI) 3300005578 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 5398142712 16104663 4233 270 7163 495 SRX2782917 Unrestricted 0.0 Metagenome 3300045995 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Microbial mat bacterial communities from riparian zone, North Slope, Alaska, United States - OKS_BSeep2E_28June2019 DOE Joint Genome Institute (JGI) 3300045995 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes demerson@bigelow.org David Emerson No Environmental Terrestrial Unclassified Soil Riparian soil riparian zone microbial mat 68.6721 -149.1359 1483876551 2645271 961 145 1692 233 Unrestricted 20.91 Metagenome 3300007623 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_H2O_MG DOE Joint Genome Institute (JGI) 3300007623 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Water 37.4962 -122.1329 453221064 947283 662 92 1119 154 SRX2523671 Unrestricted 0.0 Metagenome 3300042375 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME25Apr2018-rr0710 DOE Joint Genome Institute (JGI) 3300042375 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 811591787 1271759 284 97 371 138 Unrestricted 20.76 Metagenome 3300055094 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_84-s20 day 308 DOE Joint Genome Institute (JGI) 3300055094 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1688743089 2535609 438 178 603 196 Unrestricted 48.91 Metagenome 3300044732 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME29Jun2015-rr0880 DOE Joint Genome Institute (JGI) 3300044732 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1073943906 1577036 386 41 493 73 Unrestricted 21.81 Metagenome 7000000163 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764305738 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000163 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 98778510 170975 0 0 0 0 0.0 Metagenome 3300065636 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 815 in Dunmore, Alberta, Canada - S00JY_0336 Microbiome Insights 3300065636 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.5656823 -110.2741187 22987339 33847 21 0 35 0 0.0 Metagenome 3300025215 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0204 (SPAdes) DOE Joint Genome Institute (JGI) 3300025215 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 7.33 -26.0 115401157 232204 116 1 185 3 SRX1983336 Unrestricted 0.0 Metagenome 3300019093 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_43 DOE Joint Genome Institute (JGI) 3300019093 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 892115203 1919065 717 3 1126 12 SRX3942527 Unrestricted 55.91 Metagenome 3300017670 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - G13-03 University of Michigan 3300017670 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.39651 -85.40936 34286910 45312 16 0 9 0 0.0 Metagenome 3300002984 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - Phoenix After-Phoenix assembly at KSC-PHSF (megahit assembly) DOE Joint Genome Institute (JGI) 3300002984 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes nnivanova@lbl.gov, NNIvanova@lbl.gov; nnivanova@lbl.gov Natasha Ivanova, Natalia Ivanova; Natasha Ivanova No Engineered Built environment Unclassified Spacecraft Assembly Cleanrooms Unclassified Clean room 28.5853 -80.6508 11240420 17193 646 23 23 5 Unrestricted 0.0 Metagenome 3300069439 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, Pacific Southwest, CA, USA - SJER_001-M-20170314-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069439 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.10878 -119.73228 87350256 262073 297 22 542 47 0.0 Metagenome 2029527006 *Microbiome Permanent Draft Fungus garden microbial communities from leaf-cutting ants in Gamboa, Panama Fungus garden microbial communities from Atta colombica in Panama -fungus garden bottom 454 Life Sciences, DOE Joint Genome Institute (JGI) 2029527006 Metagenome Analysis Newbler Public on PI's request No Yes gsuen@wisc.edu Garret Suen Yes 20885794 Environmental Terrestrial Insects nest Nest Fungus garden/Fungus gallery Fungus garden 9.1167 -79.7 83167033 199573 23 0 58 0 0.0 Metagenome 3300019705 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BLT_2-3_MG DOE Joint Genome Institute (JGI) 3300019705 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 102222029 253167 193 14 387 33 SRX3983233 Unrestricted 3.44 Metagenome 3300005982 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 8/11/14 A brown DNA DOE Joint Genome Institute (JGI) 3300005982 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ebyoung@uwm.edu Erica Young, Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 1533996016 4056733 1310 309 2176 520 SRX2747781 Unrestricted 0.0 Metagenome 3300021131 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion DOE Joint Genome Institute (JGI) 3300021131 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 95313566 216762 60 17 103 34 Unrestricted 0.0 Metagenome 3300010936 *Microbiome Permanent Draft Marine microbial communities from North Pacific Gyre, Pacific Ocean Marine microbial communities from surface seawater of North Pacific Subtropical Gyre - CSHLIID00-20a-S37C001-0015 University of Hawaii 3300010936 Metagenome Analysis MEGAHIT v1.0.1 Published on request from submitter on 04/04/2017 No Yes rosiegradoville@gmail.com Mary Gradoville Yes 28729854 Environmental Aquatic Oceanic Marine Photic zone marine 22.75 -158.0 235298893 592421 267 42 451 69 SRX2445750 0.0 Metagenome 3300040414 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Abby Road, Pacific Northwest, WA, USA - ABBY_003-M-20170607-COMP-DNA1 Battelle Memorial Institute 3300040414 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.76243 -122.33033 4912235 14450 34 4 52 6 0.0 Metagenome 3300008682 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764062976 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008682 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 151818521 225713 119 0 153 0 0.0 Metagenome 3300025268 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP-114 (SPAdes) DOE Joint Genome Institute (JGI) 3300025268 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es; mbsulli@gmail.com Silvia G. Acinas; Matthew Sullivan Yes 27654921 Environmental Aquatic Oceanic Marine Unclassified Deep ocean 14.5287 -118.7737 191219760 453595 64 0 101 0 SRX4915163 Unrestricted 0.0 Metagenome 3300042612 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Glyptotermes sp. from Ebogo II, Mbalmayo, Cameroon - Gx485 Eurofins MWG Operon 3300042612 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 3.391726 11.472614 1673909040 1703951 292 57 360 71 0.0 Metagenome 3300003883 *Microbiome Permanent Draft Plastic marine debris microbial communities from the Atlantic Ocean Plastic marine debris microbial communities from the Atlantic Ocean - SEA_0035_20120519_metagen Marine Biological Laboratory 3300003883 Metagenome Analysis CLC workbench 7 released per JGI data release policy No Yes amaral@mbl.edu Linda Amaral-Zettler No Environmental Aquatic Oceanic Marine Unclassified marine 27.32333 -63.565 342333549 723718 134 26 261 55 0.0 Metagenome 3300029206 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021280-21 Beijing Genomics Institute (BGI) 3300029206 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 143384000 176857 112 0 186 0 0.0 Metagenome 3300043071 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - WH_050217 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043071 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.8725 -89.3578 4246173 13159 44 9 87 10 SRX9381782 Unrestricted 35.49 Metagenome 3300027758 *Microbiome Permanent Draft Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027758 Metagenome Analysis spades v. 3.11.1 Yes Yes jeremy.rich@maine.edu Jeremy Rich No Environmental Aquatic Coastal Marine Sediment Marine sediment 708699280 1459299 620 22 955 47 SRX2837926 Unrestricted 0.0 Metagenome 3300028854 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_1 DOE Joint Genome Institute (JGI) 3300028854 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 380868795 768839 211 78 315 111 SRX5356671 Unrestricted 0.0 Metagenome 3300060436 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210607_11_05 DOE Joint Genome Institute (JGI) 3300060436 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 726156670 1045256 304 210 399 233 Unrestricted 30.02 Metagenome 3300009930 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R1 University of New South Wales 3300009930 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au; z5119396@unsw.edu.au Holly Bennett; Viet Hung Nguyen No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 94983379 160607 54 1 78 2 0.0 Metagenome 3300029926 *Microbiome Permanent Draft North Pond 2012 Aquifer microbial communities from Mid-Atlantic Ridge, Atlantic Ocean - 1383C Deep kmer 100 The Marine Biological Laboratory 3300029926 Metagenome Analysis IDBA-UD v. 1.1.2 released by JGI data releasing policy No Yes tully.bj@gmail.com; lmseyler@gmail.com Benjamin Tully; Lauren Seyler Yes 26935537 Environmental Aquatic Aquifer Marine Formation fluid marine subseafloor aquifer 22.8 -46.05 33009876 47953 47 28 67 30 0.0 Metagenome 7000000132 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158337416 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000132 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 126268555 231720 0 0 0 0 0.0 Metagenome 3300044763 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_8 DOE Joint Genome Institute (JGI) 3300044763 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 547021225 1388678 495 20 955 26 Unrestricted 6.89 Metagenome 3300070606 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone National Park, Wyoming, USA - YELL_016-M-20200710-COMP-DNA1 Battelle Memorial Institute 3300070606 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 44.965771 -110.583711 5.93-7.8 23467987 72252 110 8 227 15 0.0 Metagenome 3300027437 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G05K2-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300027437 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 33318367 104972 149 4 268 9 SRX1991292 Unrestricted 0.0 Metagenome 3300048914 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 DOE Joint Genome Institute (JGI) 3300048914 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Rhizoplane Roots Unclassified Rhizoplane soil 42.40581 -85.40228 1459773066 2445205 595 52 938 91 Unrestricted 13.22 Metagenome 3300007733 *Microbiome Permanent Draft Gill chamber microbial communities of deep-sea hydrothermal vent shrimp from South Atlantic Ocean Gill chamber microbial communities of deep-sea hydrothermal vent shrimp from South Atlantic Ocean Shanghai Hanyu Bio-Tech Co., Ltd 3300007733 Metagenome Analysis CLC Genomics Workbench v.8.5.1 released per JGI data release policy No Yes jianglijing@tio.org.cn Lijing Jiang No Host-associated Arthropoda: Crustaceans Gill/Bronchial chamber Respiratory system Unclassified deep sea -15.1 -13.3 23519039 29439 14 2 14 4 0.0 Metagenome 3300012667 *Microbiome Permanent Draft Freshwater microbial communities from rivers and streams along an organic matter gradient associated with agriculture in Ontario, Canada Freshwater microbial communities from Maskinonge River, Ontario, Canada - S15 Molecular Research LP (MR DNA) 3300012667 Metagenome Analysis metaSPAdes released by JGI data releasing policy No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Unclassified Freshwater 44.22385 -79.4212 8.07 325315883 1148620 75 12 149 31 0.0 Metagenome 3300011500 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -PQiagenBeadWash928-5 Weill Cornell Medical College 3300011500 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.96 23690532 29100 38 0 25 0 SRX823470 0.0 Metagenome 3300044622 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME29Jul2016-rr0985 DOE Joint Genome Institute (JGI) 3300044622 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1229559360 1807502 452 82 597 110 Unrestricted 16.52 Metagenome 3300012955 *Microbiome Permanent Draft Amended soil microbial communities from New York, USA to study carbon cycling Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG DOE Joint Genome Institute (JGI) 3300012955 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes twhitman@wisc.edu Thea Whitman No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.4531 -76.3842 2425881624 5759192 2237 111 3966 239 SRX3566334 Unrestricted 5.22 Metagenome 3300021963 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D DOE Joint Genome Institute (JGI) 3300021963 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Unclassified Marine Unclassified Estuarine water 38.1516 -121.6883 1647943823 3411096 594 69 851 116 SRX4051811 Unrestricted 15.96 Metagenome 3300069357 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_003-M-20160725-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069357 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 33751913 104602 104 2 186 3 0.0 Metagenome 3300038609 *Microbiome Permanent Draft Oil contaminated soil microbial communities from a military base in Taszar, Hungary Oil contaminated soil microbial communities from a military base in Taszar, Hungary - F1_2 University of Szeged 3300038609 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Unclassified Soil Oil-contaminated Oil contaminated soil 46.37386 17.90063 4224746 10085 8 0 12 0 0.0 Metagenome 3300030048 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N1_3 DOE Joint Genome Institute (JGI) 3300030048 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 489233260 1079936 505 41 848 78 SRX5356816 Unrestricted 10.83 Metagenome 3300035229 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P4_June_2011_1300m DOE Joint Genome Institute (JGI) 3300035229 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 48.65 -126.6666 462062861 1124178 372 34 641 75 SRX8189485 Unrestricted 15.19 Metagenome 3300045910 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P11SSC1_190916_c DOE Joint Genome Institute (JGI) 3300045910 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 898931744 1391413 262 0 407 0 SRX20650683 Unrestricted 11.67 Metagenome 3300026826 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300026826 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 33798355 114583 104 4 209 3 SRX1990509 Unrestricted 0.0 Metagenome 3300043707 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - Rondonia_Forest_2_A0m DOE Joint Genome Institute (JGI) 3300043707 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.134 -62.889 997225818 2566822 377 9 741 14 Unrestricted 9.12 Metagenome 3300002894 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Sphagnum peat bog microbial communities from Tver region, Russia - PDIso1.PF56a McGill University 3300002894 Metagenome Analysis SPAdes3.1.0 released per JGI data release policy No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey No Environmental Terrestrial Peat Soil Bog Hydrocarbon resource environments 56.56667 32.76667 3.8 18576958 19272 7 0 10 0 0.0 Metagenome 3300001509 *Microbiome Permanent Draft Human axilla skin microbial communities from the University of Liverpool, UK Human axilla skin microbial communities from the University of Liverpool, UK - AX07 3300001509 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Host-associated Mammals: Human Skin Integumentary system Axilla/Armpit Human axilla skin 53.3484 -3.009 22192886 41018 55 3 92 6 0.0 Metagenome 3300009634 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_13_150 DOE Joint Genome Institute (JGI) 3300009634 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 395577318 681954 244 11 445 13 SRX3003648 Unrestricted 0.0 Metagenome 3300048610 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT_PTT1_AUG19_60cm DOE Joint Genome Institute (JGI) 3300048610 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9883 -108.4003 473285247 1055322 567 12 1160 24 Restricted 13.01 Metagenome 3300001391 *Microbiome Permanent Draft Hydrothermal vent microbial communities from the Southwest Indian Ridge Hydrothermal vent microbial communities from the Southwest Indian Ridge - SWIR1 3300001391 Metagenome Analysis released by JGI data releasing policy No Yes huiluocao@gmail.com Huiluo Cao No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent 55292183 111303 75 0 126 2 0.0 Metagenome 3300005892 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_305 DOE Joint Genome Institute (JGI) 3300005892 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 328627345 1096480 438 11 832 34 SRX2564568, SRX2581035 Unrestricted 0.0 Metagenome 3300031744 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031744 Metagenome Analysis spades v. 3.12.0 Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Unclassified Soil 18.321 -65.8172 2744763784 6271469 781 17 1419 23 SRX5296031, SRX3604135 Unrestricted 0.0 Metagenome 3300025850 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG22_combo_CG10-13_8/21/14_all (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025850 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 733976360 1256169 944 32 1384 36 SRX3348990 Unrestricted 0.0 Metagenome 3300024506 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepB_8d DOE Joint Genome Institute (JGI) 3300024506 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 167287143 358705 196 10 317 13 SRX4547351 Unrestricted 11.37 Metagenome 3300056643 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.17C.9 SIP fraction DOE Joint Genome Institute (JGI) 3300056643 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 78261270 149723 45 9 77 11 Unrestricted 16.33 Metagenome 3300027518 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Fresh water microbial communities from Ohio, USA - Utica-2 Time Series HT 2014_7_11 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027518 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Water tank Freshwater Unclassified Fresh water 40.178 -81.073 5.8 325903707 644059 210 45 299 97 SRX2925263 Unrestricted 0.0 Metagenome 3300047631 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA106-TGU DOE Joint Genome Institute (JGI) 3300047631 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6772 -83.4783 453389821 1094810 236 20 460 35 Unrestricted 9.04 Metagenome 3300017974 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG DOE Joint Genome Institute (JGI) 3300017974 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 3.8381 -73.3194 2257115499 4886577 1828 61 3241 95 SRX3936920 Unrestricted 5.39 Metagenome 3300038415 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P7_D10 DOE Joint Genome Institute (JGI) 3300038415 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 692741644 975168 219 1 330 0 SRX9404369 Unrestricted 30.37 Metagenome 3300014800 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS62_12 University of Hohenheim 3300014800 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 142457482 227770 90 1 159 0 0.0 Metagenome 3300026263 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV255 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026263 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 356225832 726251 214 1 310 3 SRX2782417 Unrestricted 0.0 Metagenome 3300000164 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 200m DOE Joint Genome Institute (JGI) 3300000164 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.35 -123.29 205213133 377999 149 8 286 13 Unrestricted 0.0 Metagenome 7000000350 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160582958 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000350 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 19213694 41409 0 0 0 0 0.0 Metagenome 3300052897 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Colorado, USA - BV_L2_S1 DOE Joint Genome Institute (JGI) 3300052897 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 40.99156 -106.60468 30612545 61359 106 28 251 49 Unrestricted 42.69 Metagenome 3300027359 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage D2F12 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027359 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 52689786 66390 51 0 47 0 SRX3195282 Unrestricted 0.0 Metagenome 3300003993 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2 DOE Joint Genome Institute (JGI) 3300003993 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov, sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe, Susannah Tringe; Jinglie Zhou No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.05241603 -121.76907401 760555806 2279169 705 4 1632 11 SRX7142760 Unrestricted 0.0 Metagenome 3300059637 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2020-0094 DOE Joint Genome Institute (JGI) 3300059637 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.70406 -83.25291 1346567655 3228895 776 405 1413 638 Unrestricted 0.0 Metagenome 3300034992 *Microbiome Permanent Draft Eastern Tropical North Pacific Ocean Metagenomes Marine microbial communities from the Eastern Tropical North Pacific Ocean - E17_3_180 Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300034992 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy No Yes mbeman@ucmerced.edu Michael Beman No Environmental Aquatic Oceanic Marine Unclassified Seawater 16.0 -110.0 195755656 255420 99 2 142 10 0.0 Metagenome 3300024445 *Microbiome Permanent Draft Archaea associated with biofilms attached to the leaf surfaces Leaf-attached biofilm archaeal communities from the bottom of the Lake Ciso, Girona, Spain - BATHY-1 Lucigen 3300024445 Metagenome Analysis IDBA released by JGI data releasing policy No Yes jlbalcazar@icra.cat Jose Luis Balcazar No Environmental Aquatic Lake Freshwater Biofilm biofilm 42.12 2.74 599492 762 114 6 171 8 0.0 Metagenome 3300043156 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - WH_050217 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043156 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.8725 -89.3578 22325693 64410 97 15 164 16 SRX9381782 Unrestricted 20.89 Metagenome 3300034374 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4) (version 4) DOE Joint Genome Institute (JGI) 3300034374 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bcampb7@clemson.edu; chenf@umces.edu Barbara Campbell; Feng Chen Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.124826 -75.260873 431498381 842171 16 0 22 0 SRX3786003, SRX2745129, SRX3786002 Unrestricted 0.0 Metagenome 3300004809 *Microbiome Permanent Draft Biogas reactor microbial communities Biogas reactor microbial communities from As, Norway - D1BOC_PacBio Genomics Core Facility (Oslo University Hospital and University of Oslo) 3300004809 Metagenome Analysis Mira released per JGI data release policy No Yes phillip.b.pope@gmail.com Phillip Pope, Phil B. Pope No Engineered Bioreactor Biogas Anaerobic Unclassified Biogas reactor 59.6 10.8 86737 88 0 0 0 0 0.0 Metagenome 3300041486 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG AgResearch, New Zealand, Mosgeil 3300041486 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Rhizoplane Roots Dairy farm pasture -43.648506 172.343549 1585817565 3615338 335 46 1080 163 0.0 Metagenome 3300027565 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027565 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 322760951 758253 195 26 398 39 SRX3312033 Unrestricted 0.0 Metagenome 3300040730 *Microbiome Finished Hotspring water microbial communities from Chignahuapan, Puebla, Mexico Hot spring water microbial communities from Chignahuapan, Puebla, Mexico - S2 Instituto de Biotecnologia, UNAM 3300040730 Metagenome Analysis MEGAHIT v. 1.2.9 released by JGI data releasing policy No Yes hugo.castelansnc@uaem.edu.mx Hugo Gildardo Castelan Sanchez No Environmental Aquatic Hot (42-90C) Thermal springs Neutral hot spring water 19.8214 -98.1178 7-7.02 7957370 13910 13 1 32 1 0.0 Metagenome 3300069585 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Abby Road, Pacific Northwest, WA, USA - ABBY_006-O-20170605-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069585 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.76243 -122.33033 6567659 21467 34 9 78 12 0.0 Metagenome 3300038468 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Sediment microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_East_5 DOE Joint Genome Institute (JGI) 3300038468 Metagenome Analysis metaspades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Wetlands Marine Sediment sediment 26.502 -80.2225 1431485951 2247105 581 13 966 18 SRX9406147 Unrestricted 12.84 Metagenome 3300050189 *Microbiome Permanent Draft Lab enriched KB-1 culture virl communities from University of Toronto, Ontario, Canada Lab enriched KB-1 culture virl communities from University of Toronto, Ontario, Canada - 1,2-DCA-MeOH University of Toronto 3300050189 Metagenome Analysis Custom JGI assembly. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Microbial Unclassified Bacteria Unclassified Lab enriched KB-1 culture 43.6587 -79.3955 3905031 7062 4 0 8 0 SRX10994677 0.0 Metagenome 3300003152 *Microbiome Permanent Draft Sediment microbial communities from Loktak lake India Freshwater sediment microbial communities from Loktak Lake, India National Environmental Engineering Research Institute, India 3300003152 Metagenome Analysis Made public because these are downloaded from Genbank No Yes hj_purohit@neeri.res.in Hemant Purohit No Environmental Aquatic Lentic Freshwater Sediment Sediment 24.562571 93.815303 115912751 275059 22 7 75 10 0.0 Metagenome 3300001482 *Microbiome Permanent Draft Sheep rumen microbial communities from New Zealand from high and low methane emitting sheep Sheep rumen microbial communities from New Zealand - Rank07_low DOE Joint Genome Institute (JGI) 3300001482 Metagenome Analysis Velvet Released because these are assemblies from SRA data No Yes janine.kamke@agresearch.co.nz, janine.kamke@uni-wuerzburg.de Janine Kamke No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen -40.352 175.608 401621835 774648 653 53 1103 78 0.0 Metagenome 3300005789 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS891_Anemone_DNA 3300005789 Metagenome Analysis Ray v. 2.3.1, minimum contig length 1kb released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com; randerson@carleton.edu; elks@mit.edu Caroline Fortunato, Caroline Fortunato; Rika Anderson; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933231 -130.013645 28138298 37992 5 0 5 1 0.0 Metagenome 3300069612 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_003-M-20160720-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069612 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 16191078 48315 38 2 53 5 0.0 Metagenome 3300029041 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 385_12M Beijing Genomics Institute (BGI) 3300029041 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 109509083 148108 98 0 151 0 ERX491121 0.0 Metagenome 3300020722 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 23OCT2008 hypolimnion DOE Joint Genome Institute (JGI) 3300020722 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 113763045 246345 119 7 199 15 Unrestricted 0.0 Metagenome 3300038826 *Microbiome Permanent Draft Activated sludge microbial communities from lab-scale anammox bioreactor in University of Utah, Salt Lake City, Utah, USA Activated sludge microbial communities from lab-scale anammox bioreactor in University of Utah, Salt Lake City, Utah, USA - MiSeq_metaG_S2 University of Wisconsin 3300038826 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 28561030 Engineered Bioreactor Unclassified Anaerobic Unclassified Activated sludge 40.7649 -111.8421 48907853 67545 23 0 30 0 0.0 Metagenome 3300007257 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila melanogaster male 5 gut Cornell University 3300007257 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy Yes Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila melanogaster male adult gut 42.875296 -77.006403 41668567 64263 0 0 0 0 0.0 Metagenome 3300052275 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BG2-06_D50 (version 3) DOE Joint Genome Institute (JGI) 3300052275 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3634 19.0475 151799068 291058 66 6 105 11 Restricted 0.0 Metagenome 3300009393 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159814214 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300009393 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes NMikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 211924859 343041 233 0 338 0 0.0 Metagenome 3300034153 *Microbiome Finished Biofilm microbial communities from bioreactors in Pennsylvania, USA Biofilm microbial communities from low pH Fe oxidizing bioreactors in Pennsylvania, USA - DA_pH_2.7 The Pennsylvania State University 3300034153 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy Yes Yes dka9@psu.edu Diana Ayala No Engineered Bioreactor Unclassified Aerobic Unclassified biofilm 40.2398 -78.8489 2.7 31672188 54133 20 2 30 7 0.0 Metagenome 3300013738 *Microbiome Permanent Draft Regolith bacterial community from Guaba Ridge, Luquillo Mountains, Puerto Rico Regolith bacterial community from Guaba Ridge, Luquillo Mountain, Puerto Rico enriched on smectite - SMT1_8 University of Wisconsin, Madison 3300013738 Metagenome Analysis MetaSPAdes v3.10 released by JGI data releasing policy Yes Yes snapieralski@wisc.edu Stephanie Napieralski No Engineered Lab enrichment Unclassified Unclassified Unclassified Regolith 18.28 -65.79 35296578 51290 6 0 11 0 0.0 Metagenome 3300029961 *Microbiome Permanent Draft Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil - Pedrinho_C3 Reanalysis Center for Advanced Technologies in Genomics, Sao Paulo University 3300029961 Metagenome Analysis metaSPAdes v. 3.12.0 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 53239694 98418 86 3 130 2 0.0 Metagenome 3300004172 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 44_HOW7 DOE Joint Genome Institute (JGI) 3300004172 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 96733505 229195 89 11 155 13 SRX2720573 Unrestricted 0.0 Metagenome 3300011187 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #897 DOE Joint Genome Institute (JGI) 3300011187 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 244559929 500653 252 24 414 36 SRX2526868 Unrestricted 0.0 Metagenome 3300013457 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100213 University of Pennsylvania 3300013457 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4313184 11872 12 3 16 6 SRX756686 0.0 Metagenome 3300033173 *Microbiome Permanent Draft Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_8_08-R1 DOE Joint Genome Institute (JGI) 3300033173 Metagenome Analysis spades v. 3.13.0 Yes Yes ziels@mail.ubc.ca Ryan Ziels No Engineered Bioreactor Unclassified Anaerobic Unclassified sludge 51.9691 5.6654 533876655 836301 494 0 646 1 SRX7542610 Unrestricted 38.04 Metagenome 7000000105 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 158458797 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000105 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 5358176 9445 0 0 0 0 0.0 Metagenome 3300003281 *Microbiome Permanent Draft Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia- Sample GRAN Australian Centre for Ecogenomics 3300003281 Metagenome Analysis No Yes c.skennerton@gmail.com Connor Skennerton No Engineered Wastewater Biological phosphorus removal Nutrient removal Activated sludge Enhanced biological phosphorus removal bioreactor -27.485973 153.190699 100180505 137048 30 1 30 2 0.0 Metagenome 3300011636 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01115 Weill Cornell Medical College 3300011636 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.66 -73.89 32729435 43955 10 0 24 0 SRX823070 0.0 Metagenome 3300008755 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human throat microbial communities from NIH, USA - visit 2, subject 763496533 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008755 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human 39.0042816 -77.1012173 129863220 187698 78 0 112 1 SRX024939 0.0 Metagenome 3300009158 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG DOE Joint Genome Institute (JGI) 3300009158 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 48.2311 -71.2508 1140075709 2142963 758 42 1254 86 SRX2996491 Unrestricted 0.0 Metagenome 3300011169 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #50 DOE Joint Genome Institute (JGI) 3300011169 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 56174165 110684 46 3 102 5 SRX2526858 Unrestricted 0.0 Metagenome 3300019732 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BRC_0-1_MG DOE Joint Genome Institute (JGI) 3300019732 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 124386778 306418 228 34 452 61 Unrestricted 3.88 Metagenome 3300042439 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 DOE Joint Genome Institute (JGI) 3300042439 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.201 -97.9447 633011309 1586846 611 48 1177 71 Unrestricted 7.44 Metagenome 3300040038 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_009-M-9-26-20130731-GEN-DNA1 Argonne National Laboratory 3300040038 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 14913217 39302 37 1 59 2 0.0 Metagenome 3300001160 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 DOE Joint Genome Institute (JGI) 3300001160 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 60484272 187614 140 23 259 32 SRX3312007 Unrestricted 0.0 Metagenome 3300005767 *Microbiome Permanent Draft Human lung microbial communities from healthy (non-smokers and smokers) and HIV infected subjects Human lung microbial communities from HIV infected subject HIV3-1 New York University Langone Medical Center 3300005767 Metagenome Analysis Shotgun released per JGI data release policy No Yes leopoldo.segal@nyumc.org Leopoldo N Segal No Host-associated Mammals: Human Lung Respiratory system Unclassified Lung Microbiome 40.7127 -74.0059 21915443 64652 0 3 0 2 0.0 Metagenome 3300017998 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_150 DOE Joint Genome Institute (JGI) 3300017998 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 639091210 1130101 422 6 715 3 SRX3960106 Unrestricted 21.03 Metagenome 3300004626 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius loisae HERON ISLAND.2 (version 2) DOE Joint Genome Institute (JGI) 3300004626 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 458362401 1008086 3 3 5 4 SRX3340561, SRX3340562 Unrestricted 0.0 Metagenome 3300050304 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_66 DOE Joint Genome Institute (JGI) 3300050304 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -75.858 159.974 313727437 496378 29 19 50 20 SRX18235919 Restricted 40.18 Metagenome 3300029133 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019845-88 Beijing Genomics Institute (BGI) 3300029133 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 207113454 271950 158 0 272 0 0.0 Metagenome 3300041410 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 DOE Joint Genome Institute (JGI) 3300041410 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.8942 -103.685 546889400 1505878 790 68 1334 93 SRX14829318 Unrestricted 6.25 Metagenome 3300012540 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100453 University of Pennsylvania 3300012540 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4132996 11659 8 3 15 2 SRX756545 0.0 Metagenome 3300025463 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_17_10 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025463 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 243068996 442672 102 35 164 50 SRX3006626 Unrestricted 0.0 Metagenome 3300049455 *Microbiome Permanent Draft Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA - 3_d_oct_JRB_CZO DOE Joint Genome Institute (JGI) 3300049455 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dawsonfairbanks@email.arizona.edu Dawson Fairbanks No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.882743 -105.537439 893014400 1502979 252 4 439 6 Unrestricted 14.67 Metagenome 3300050243 *Microbiome Permanent Draft Freshwater microbial communities from Yellowstone Lake, Wyoming, United States Freshwater microbial communities from Yellowstone Lake, Wyoming, United States - 2017-07-24-8m DOE Joint Genome Institute (JGI) 3300050243 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.412 -110.335 733941087 1097923 255 45 311 60 Restricted 22.84 Metagenome 3300035702 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from South Angle Lake, Antarctica - #71 Australian Centre for Ecogenomics 3300035702 Metagenome Analysis Spades v. 3.12.0 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.64235 77.9111 385827110 706806 168 7 290 29 0.0 Metagenome 3300002549 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-212 DOE Joint Genome Institute (JGI) 3300002549 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.29055 -156.788643 319134597 684873 236 4 408 6 SRX1990807 Unrestricted 0.0 Metagenome 3300022795 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S14 Version 2 University of New South Wales 3300022795 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 36780390 63235 14 5 15 10 0.0 Metagenome 3300042585 *Microbiome Permanent Draft Whole genome sequencing of bacteria isolated from intertidal zone macroalgae Co-culture of Marinomonas sp. and Cellulophaga sp. from the University of Maine, Orono, USA - 23 Marine Biological Laboratory 3300042585 Metagenome Analysis SPAdes v. 3.14.0 released by JGI data releasing policy No Yes vfrazier@mbl.edu Victoria Frazier No Host-associated Algae Ectosymbionts Red algae Unclassified defined medium 44.89404733 -68.67282384 8.2 7877857 7458 16 0 13 0 0.0 Metagenome 3300002616 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A4-12 DOE Joint Genome Institute (JGI) 3300002616 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 238427 828 18 4 32 2 SRX1991288 Unrestricted 0.0 Metagenome 3300070530 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Arizona, USA - SRER_047-M-20190806-COMP-DNA1 Battelle Memorial Institute 3300070530 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.910358 -110.838435 8.7-8.94 11689239 36288 56 7 88 11 0.0 Metagenome 3300013339 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100335 University of Pennsylvania 3300013339 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12905393 31672 38 10 60 23 SRX756322 0.0 Metagenome 3300002471 *Microbiome Permanent Draft Freshwater microbial community from Sao Paulo Zoo Lake, Brazil Freshwater microbial communities from San Paulo Zoo lake, Brazil - MAY 2013 3300002471 Metagenome Analysis SoapDeNovo released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Lake -23.651072 -46.620675 224058064 594549 5 6 43 5 0.0 Metagenome 3300024934 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 74_LOW10 (SPAdes) DOE Joint Genome Institute (JGI) 3300024934 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 68036730 107115 34 0 48 0 SRX2720796 Unrestricted 0.0 Metagenome 3300048686 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lake Yojoa, Honduras - Yojoa_01_2020_R_hypo (version 2) DOE Joint Genome Institute (JGI) 3300048686 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Lake Freshwater Unclassified Freshwater 14.9144 -88.0205 924025607 1603287 443 110 805 169 Unrestricted 0.0 Metagenome 3300008515 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765074482 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008515 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 171284191 265586 104 0 160 0 0.0 Metagenome 3300000307 *Microbiome Permanent Draft Alviniconcha endosymbiont microbial communities from the Eastern Lau Spreading center hydrothermal vents, Pacific Ocean Alviniconcha endosymbiont microbial communities from the Eastern Lau Spreading center hydrothermal vents, Pacific Ocean - GammaLau Harvard University 3300000307 Metagenome Analysis released per JGI data release policy No Yes rbeinart@fas.harvard.edu Roxanne Beinart No Host-associated Mollusca Gills Respiratory system Intracellular Alviniconcha endosymbiont -21.99 -176.56833 2107801 2524 1 1 1 2 0.0 Metagenome 3300042357 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME24Jul2013-rr0794 DOE Joint Genome Institute (JGI) 3300042357 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 541351924 859158 285 49 392 70 Unrestricted 16.76 Metagenome 3300031668 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23 DOE Joint Genome Institute (JGI) 3300031668 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1520325775 3750415 526 10 935 23 SRX5665938 Unrestricted 12.49 Metagenome 3300026861 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A5a-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026861 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 47620548 145859 156 2 307 9 SRX1991308 Unrestricted 0.0 Metagenome 3300026147 *Microbiome Permanent Draft Utah desert microbiome from environmental samples near Hanksville, Utah, USA Dry sediment microbial communities from Utah desert near Hanksville, Utah, USA - RSL1 McGill University 3300026147 Metagenome Analysis canu v. 1.7 released by Catherine Maggiori No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Terrestrial Unclassified Soil Desert Dry sediment 38.41734363 -110.7846979 2454618 3378 0 0 2 0 0.0 Metagenome 3300036854 *Microbiome Permanent Draft Soil microbial communities from fields in the western Corn Belt region, Nebraska, United States Soil microbial communities from fields in the western Corn Belt region, Nebraska, United States - Switchgrass plot 312, no N, depth 2 DOE Joint Genome Institute (JGI) 3300036854 Metagenome Analysis metaspades v. 3.13.0 Yes Yes marty.schmer@ars.usda.gov Marty Schmer No Environmental Terrestrial Agricultural land Soil Unclassified soil 41.1677 -96.4108 1724371909 2732383 384 7 640 14 SRX8296232 Unrestricted 16.36 Metagenome 3300007092 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Stylissa sp. microbiome, Papua New Guinea CO2seep, Dobu ""control"", st7dc" University of New South Wales 3300007092 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Stylissa sp. (marine sponge) -9.752083 150.854133 95072257 234459 20 4 40 10 0.0 Metagenome 7000000059 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 763840445 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000059 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 1583933 1874 0 0 0 0 0.0 Metagenome 3300027050 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027050 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 106973104 284254 180 13 355 23 SRX3311911 Unrestricted 0.0 Metagenome 3300036429 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T75 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036429 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 104390232 153528 58 5 72 9 SRX8128124, SRX8128123 Unrestricted 0.0 Metagenome 3300022846 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1452 DOE Joint Genome Institute (JGI) 3300022846 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 165102958 312639 142 1 231 4 SRX4397537 Unrestricted 15.81 Metagenome 3300012296 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100583 University of Pennsylvania 3300012296 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4853314 12314 18 6 23 9 SRX756171 0.0 Metagenome 3300071037 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_001-O-20190702-COMP-DNA1 3300071037 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 23669531 73688 53 5 112 8 0.0 Metagenome 3300070829 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_007-M-20200708-COMP-DNA1 3300070829 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 11613856 37247 44 4 78 12 0.0 Metagenome 3300070454 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_043-M-20200713-COMP-DNA1 3300070454 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 18252395 55481 93 3 170 3 0.0 Metagenome 3300011259 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_4, 0.2 Toyama Prefectural University 3300011259 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Sediment marine 37.36023 137.9591 181041482 408849 78 4 178 8 0.0 Metagenome 3300002525 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C27A4_80 DOE Joint Genome Institute (JGI) 3300002525 Metagenome Analysis Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 27788098 71703 105 29 184 40 SRX1990964 0.0 Metagenome 3300018477 *Microbiome Permanent Draft Bovine feces microbial communities from beef and dairy calves in Davis, CA, USA Bovine feces microbial communities from dairy calf in Davis, CA, USA - DMJL001B re-assembly QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018477 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes jxnliu@ucdavis.edu Jinxin Liu No Host-associated Mammals Large intestine Digestive system Fecal feces 38.5449 -121.7405 23316508 47042 47 1 84 3 0.0 Metagenome 3300030381 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021307-94 Beijing Genomics Institute (BGI) 3300030381 Metagenome Analysis Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 222438385 307203 197 0 277 0 0.0 Metagenome 3300027476 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08.2A5-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300027476 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 24965235 84074 97 3 164 5 SRX2576247 Unrestricted 0.0 Metagenome 3300070796 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountains, Colorado, USA - RMNP_043-O-20200701-COMP-DNA1 3300070796 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 71263621 219725 219 41 350 74 0.0 Metagenome 3300027611 *Microbiome Permanent Draft Ecteinascidia turbinata symbiotic microbial communities from the Caribbean mangrove Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027611 Metagenome Analysis spades v. 3.11.1 Yes Yes davidhs@lsi.umich.edu David Sherman No Host-associated Tunicates Unclassified Ascidians Unclassified Ecteinascidia turbinata 24.5512 -81.8083 816668862 792551 16 6 18 22 SRX2553647 Unrestricted 0.0 Metagenome 3300001461 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 DOE Joint Genome Institute (JGI) 3300001461 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 53549027 171243 365 159 574 296 SRX3311924 Unrestricted 0.0 Metagenome 3300047538 *Microbiome Permanent Draft Floating fern leaf microbial communities from various locations Floating fern leaf microbial communities from Ibadan, Nigeria - 7509_IRRI DOE Joint Genome Institute (JGI) 3300047538 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dave.armitage@gmail.com David Armitage No Host-associated Plants Phylloplane/Leaf Phyllosphere Endophytes Leaf 7.4921 3.8926 55851407 85303 16 6 23 11 Unrestricted 310.51 Metagenome 3300049844 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Colorado, USA - arikareeriver_2019_sed_WHONDRS-S19S_0023 DOE Joint Genome Institute (JGI) 3300049844 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 39.75841 -102.44896 229629811 564630 566 17 1034 26 Restricted 0.0 Metagenome 3300020710 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 20SEP2008 epilimnion DOE Joint Genome Institute (JGI) 3300020710 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 91209073 200897 77 14 123 20 Unrestricted 0.0 Metagenome 3300069620 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from LBJ National Grassland , Southern Plains, TX, USA - CLBJ_031-M-20170412-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069620 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 33.40123 -97.57 18739596 58713 81 5 125 16 0.0 Metagenome 3300001250 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 13AUG2008 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300001250 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 6749322 13035 14 4 26 5 SRX3310665 Unrestricted 0.0 Metagenome 3300035079 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - T8-14 Autonomous University of Barcelona 3300035079 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 77808816 319389 489 0 975 0 0.0 Metagenome 3300015341 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_22AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015341 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 272755630 488695 57 89 79 140 SRX3926819 Unrestricted 9.66 Metagenome 3300011842 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00458 Weill Cornell Medical College 3300011842 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.69 -73.99 44374063 65693 17 0 29 0 SRX822427 0.0 Metagenome 3300029982 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_1 DOE Joint Genome Institute (JGI) 3300029982 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 719357414 1306045 432 110 644 172 SRX5356897 Unrestricted 10.96 Metagenome 3300025930 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025930 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Environmental Terrestrial Unclassified Soil Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 3446451779 8037975 1461 37 2789 59 SRX1989946, SRX1989947, SRX1989948, SRX1989949 Unrestricted 0.0 Metagenome 7000000627 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 763820215 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000627 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 52873898 89612 0 0 0 0 0.0 Metagenome 3300005926 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 3 Metagenome Rauer3 DOE Joint Genome Institute (JGI) 3300005926 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli, Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake enrichment -68.8244 77.8344 51172647 85165 69 0 139 0 SRX2747270 Unrestricted 0.0 Metagenome 3300070845 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_042-O-20180806-COMP-DNA1 3300070845 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 2443373 8375 41 0 65 3 0.0 Metagenome 3300007167 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764042746 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007167 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 100773841 181004 138 1 180 1 0.0 Metagenome 3300007841 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765034022 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007841 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 17074206 31916 26 0 29 0 0.0 Metagenome 3300038398 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR09_17 DOE Joint Genome Institute (JGI) 3300038398 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Crustal Fluids crustal fluids 47.7534 -127.7638 1066942768 2526191 901 192 1463 309 SRX9096389 Unrestricted 18.38 Metagenome 3300004755 *Microbiome Permanent Draft Metagenomics analysis of sediments collected from Formosa Ridge Marine sediment microbial communities from Formosa Ridge, South China Sea - G1-2 Beijing Genomics Institute (BGI) 3300004755 Metagenome Analysis SOAPdenovo (version 1.05) released per JGI data release policy No Yes mclai01@gmail.com Mei-Chin Lai No Environmental Aquatic Cold seeps Marine Sediment Marine sediment 22.11546667 119.28443333 2776003 6758 12 5 20 3 0.0 Metagenome 3300003262 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Consortium phage from Compost microbial communities from Sao Paulo Zoo, Brazil - ZCPH0001 University of Sao Paulo, Virginia Bioinformatics Institute 3300003262 Metagenome Analysis SoapDeNovo released per JGI data release policy No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal No Engineered Lab enrichment Aerobic media Defined media Unclassified Compost -23.651072 -46.620675 6141033 8562 3 0 1 0 0.0 Metagenome 3300014542 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS62_6 University of Hohenheim 3300014542 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 88558477 142477 52 0 123 0 0.0 Metagenome 3300032333 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 17-098 Genome Quebec 3300032333 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.084681 -71.507629 463818710 1058344 460 59 788 125 0.0 Metagenome 3300026374 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A DOE Joint Genome Institute (JGI) 3300026374 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 188377876 462231 200 31 343 51 SRX4801676 Unrestricted 10.64 Metagenome 3300026992 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 E3 (2) (SPAdes) DOE Joint Genome Institute (JGI) 3300026992 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 103618788 158469 72 0 91 0 SRX3311654 Unrestricted 0.0 Metagenome 3300036445 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C5-3C DOE Joint Genome Institute (JGI) 3300036445 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 153877197 467655 293 5 513 10 SRX8793697 Unrestricted 5.05 Metagenome 3300005206 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D2 DOE Joint Genome Institute (JGI) 3300005206 Metagenome Analysis Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.000637 -121.624207 505169782 1645600 653 7 1577 17 SRX7143591 Unrestricted 0.0 Metagenome 3300017462 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS375 with 3.0UM filter JGI facility at Oak Ridge National Laboratory 3300017462 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 23038946 49097 27 6 39 7 0.0 Metagenome 3300008626 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764487809 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008626 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 103880820 130739 66 0 76 0 0.0 Metagenome 7000000291 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 765034022 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000291 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 40697 61 0 0 0 0 SRX025181 0.0 Metagenome 2170459019 *Microbiome Permanent Draft Switchgrass, maize and mischanthus litter microbial communities from University of Illinois Energy Farm, Urbana, IL Litter degradation MG4 University of Illinois, Urbana-Champaign 2170459019 Metagenome Analysis released per JGI data release policy No Yes lixz@illinois.edu Xiangzhen Li No Engineered Solid waste Composting Grass Unclassified Switchgrass, maize and mischanthus litter 40.1097 -88.2041 224100973 546550 208 22 391 20 0.0 Metagenome 3300006950 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one DOE Joint Genome Institute (JGI) 3300006950 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.299 -156.61 1728384265 5628134 1535 49 2798 90 SRX2901267 Unrestricted 0.0 Metagenome 3300028630 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Ile DOE Joint Genome Institute (JGI) 3300028630 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 303911707 479872 199 0 277 3 SRX5281947 Unrestricted 27.91 Metagenome 3300012835 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched mosquito-associated microbial communities from UW Madison campus, WI, USA - HID1973I_E1 MG DOE Joint Genome Institute (JGI) 3300012835 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 85339973 129393 86 0 110 0 SRX3564592 Unrestricted 0.0 Metagenome 3300003775 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 DOE Joint Genome Institute (JGI) 3300003775 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 262989495 426637 171 4 239 9 SRX2770589 Unrestricted 0.0 Metagenome 3300023491 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_28A University of California, Irvine 3300023491 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 121481092 122945 29 1 19 0 0.0 Metagenome 3300055541 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.19W.13 SIP fraction DOE Joint Genome Institute (JGI) 3300055541 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 151651556 281739 42 17 87 35 Unrestricted 10.36 Metagenome 3300037102 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 S-3-D DOE Joint Genome Institute (JGI) 3300037102 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0475 534628040 881728 171 4 264 7 SRX8377302 Unrestricted 22.59 Metagenome 3300051218 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - P.F.S.T25 (v4) (version 4) DOE Joint Genome Institute (JGI) 3300051218 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 182513530 359194 109 7 222 16 SRX4550135, SRX19336181 Unrestricted 0.0 Metagenome 3300059411 *Microbiome Permanent Draft Sorghum rhizosphere and bulk soil microbial communities from University of Arizona Maricopa Agricultural Center, AZ, USA Soil microbial communities from unplanted plot in University of Arizona Maricopa Agricultural Center, AZ, USA - 1_0-15-20210518_a DOE Joint Genome Institute (JGI) 3300059411 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Agricultural land Soil Unclassified Soil 33.07735 -111.974819 417464711 986457 584 15 1104 29 Unrestricted 9.01 Metagenome 3300025634 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample F53-2 shallow-092012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025634 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 342022794 750358 225 51 399 77 SRX1987695 Unrestricted 0.0 Metagenome 3300053128 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 endosphere DOE Joint Genome Institute (JGI) 3300053128 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121531 -123.271098 543686581 764510 79 79 131 100 Unrestricted 16.11 Metagenome 3300029892 *Microbiome Permanent Draft Fracture fluid microbial communities from borehole on the 26 level of Beatrix Gold Mine, Welkom, South Africa Fracture fluid microbial communities from borehole on the 26 level of Beatrix Gold Mine, Welkom, South Africa - Be326_2011_MF Princeton University 3300029892 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Terrestrial Fracking water Deep subsurface Unclassified Fracture fluid -28.232288 26.794365 88034589 131788 63 0 101 1 0.0 Metagenome 3300055479 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_170426.NP2 DOE Joint Genome Institute (JGI) 3300055479 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 978265181 1915158 498 137 762 264 Restricted 19.86 Metagenome 3300020550 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 08OCT2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020550 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 115481112 267238 87 7 150 10 SRX1989918 Unrestricted 0.0 Metagenome 3300000592 *Microbiome Permanent Draft Groundwater microbial communities from well in New Jersey, USA Groundwater microbial communities from well in New Jersey, USA, that are chlorine contaminated, sample 2 University of California, Berkeley 3300000592 Metagenome Analysis released per JGI data release policy No Yes jtremblay@lbl.gov Julien Tremblay No Environmental Aquatic Drinking water Freshwater Chlorinated Groundwater 39.86 -74.34 37176331 77214 1 0 1 1 0.0 Metagenome 3300045729 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Cordillera ecozone, Canada - Lake 13-527 Genome Quebec 3300045729 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 62.256408 -140.66822 1130869876 2585308 600 119 947 239 0.0 Metagenome 3300019859 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Sao Paulo, Brazil - ZCM1 Center for Advanced Technologies in Genomics, Sao Paulo University 3300019859 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Engineered Solid waste Composting Zoo waste Unclassified compost -23.651072 -46.620675 89227177 175960 81 5 110 10 0.0 Metagenome 3300001868 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Incubations 11-31A DOE Joint Genome Institute (JGI) 3300001868 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.290884 -156.788063 250759903 448272 258 0 434 2 SRX1990926 0.0 Metagenome 3300043697 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - Rondonia_Pasture_3_A0m DOE Joint Genome Institute (JGI) 3300043697 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.204 -62.774 763308688 1975233 506 4 968 6 Unrestricted 7.89 Metagenome 3300030230 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E2_2 DOE Joint Genome Institute (JGI) 3300030230 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 437761486 977129 635 85 1031 145 SRX5799334 Unrestricted 10.18 Metagenome 3300002170 *Microbiome Permanent Draft Biogas fermentation microbial communities from biogas plants in Germany Biogas fermentation microbial communities from Germany - Plant 3 DNA1 DOE Joint Genome Institute (JGI) 3300002170 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes asczyrba@techfak.uni-bielefeld.de Alexander Sczyrba Yes 27462367 Engineered Bioreactor Digestate Anaerobic Unclassified Biogas fermentantion 52.0385 8.4956 7.53 439869557 872010 694 3 1152 7 SRX1598043 Unrestricted 0.0 Metagenome 3300026882 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Slides-mat_host_7_15 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026882 Metagenome Analysis spades v. 3.11.1 Yes Yes jim.fredrickson@pnnl.gov; binskeep@montana.edu Jim Fredrickson; William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.733 -110.709 3 69099761 140386 40 0 48 1 SRX2753797 Unrestricted 0.0 Metagenome 3300069204 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Great Basin, Onaqui, Utah, USA - ONAQ_002-M-20210524-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069204 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Shrubland Soil Unclassified Terrestrial soil 40.193323 -112.464547 4296729022 10256351 2878 63 5514 84 0.0 Metagenome 3300069343 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_002-M-20170627-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069343 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 69800523 195015 140 6 281 2 0.0 Metagenome 3300046402 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA086B-BCH DOE Joint Genome Institute (JGI) 3300046402 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6792 -83.4776 590343664 1449224 375 42 657 68 Unrestricted 8.25 Metagenome 3300013248 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100276 University of Pennsylvania 3300013248 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 29997562 70347 21 0 25 0 SRX756625 0.0 Metagenome 3300014784 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS63_18 University of Hohenheim 3300014784 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 111392802 193943 78 1 122 5 0.0 Metagenome 3300045235 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_5_B DOE Joint Genome Institute (JGI) 3300045235 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 196256520 222841 103 1 142 1 Unrestricted 88.35 Metagenome 3300044686 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - COC2D DOE Joint Genome Institute (JGI) 3300044686 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 1162902295 2011052 481 22 900 30 Unrestricted 15.14 Metagenome 3300056657 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.20C.6 SIP fraction DOE Joint Genome Institute (JGI) 3300056657 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 160417217 288024 68 6 104 9 Unrestricted 16.75 Metagenome 3300046323 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_88 DOE Joint Genome Institute (JGI) 3300046323 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9236 -106.9499 576741354 1336537 995 386 1933 580 Restricted 0.0 Metagenome 3300012179 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT262_2 DOE Joint Genome Institute (JGI) 3300012179 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9226 -106.9511 262047899 607051 337 21 639 47 SRX3368781 Unrestricted 0.0 Metagenome 3300020434 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001013 (ERX555944-ERR599071) CEA Genoscope 3300020434 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -25.8339 -111.8078 1144135525 3065886 643 66 1345 127 0.0 Metagenome 3300038799 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - WLA1 Michigan State University 3300038799 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 33.72215 -118.2662 27535144 75937 1 0 4 0 0.0 Metagenome 3300021057 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego desert, Southern California, United States - S3_20-13C DOE Joint Genome Institute (JGI) 3300021057 Metagenome Analysis spades v. 3.10.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.305 -116.2547 204709815 476996 281 17 473 33 SRX3936749 Unrestricted 42.09 Metagenome 3300010285 *Microbiome Permanent Draft Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 2_5_20_6_A2 metaG DOE Joint Genome Institute (JGI) 3300010285 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes Steve.Brown@lanzatech.com Steven Brown Yes 30202438 Engineered Bioreactor Anaerobic Semi-continuous Digestate Switchgrass degrading 43.726 -72.1429 273937062 469978 785 2 1081 2 SRX3289994 Unrestricted 0.0 Metagenome 3300014108 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_024 The George Washington University (GWU) 3300014108 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 67257514 133277 66 10 113 19 SRX656275 0.0 Metagenome 3300005961 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 8/11/14 B green DNA DOE Joint Genome Institute (JGI) 3300005961 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ebyoung@uwm.edu Erica Young, Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 973823138 2485954 942 256 1462 459 SRX2747779 Unrestricted 0.0 Metagenome 3300057307 *Microbiome Permanent Draft Lake microbial communities from Canada Sediment microbial communities from the Mixedwood Plains Ecozone, Canada - top sediment 08-148 metaSPAdes Genome Quebec 3300057307 Metagenome Analysis SPAdes v. 3.11.1 metaSPAdes mode Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Sediment 44.49841 -76.408316 1034029558 2852061 619 46 1268 105 0.0 Metagenome 3300021554 *Microbiome Permanent Draft Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge Stylissa sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - St7is 200bp no Eukaryotes last University of New South Wales 3300021554 Metagenome Analysis IDBA-UD released by Emmanuelle BOTTE Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Stylissa sp. (marine sponge) -0.940556 150.816667 138657074 214494 23 13 25 24 0.0 Metagenome 3300031561 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26 DOE Joint Genome Institute (JGI) 3300031561 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1559370587 3726539 539 5 892 7 SRX5665770 Unrestricted 12.34 Metagenome 3300011677 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01372 Weill Cornell Medical College 3300011677 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.64 -74.01 22933206 34976 10 0 15 0 SRX823312 0.0 Metagenome 3300035245 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Soil microbial communities from West Virginia, United States - Field_WV_3 DOE Joint Genome Institute (JGI) 3300035245 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Environmental Terrestrial Agricultural land Soil Bulk soil soil 39.6589 -79.9058 871964913 2397083 926 60 1694 106 SRX8289795 Unrestricted 6.87 Metagenome 3300006406 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 3 of subject 158883629 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006406 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 6518290 11491 4 0 9 0 0.0 Metagenome 3300049599 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA3 DOE Joint Genome Institute (JGI) 3300049599 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 388505218 1011333 408 5 836 6 Unrestricted 7.39 Metagenome 3300036934 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8NT15 DOE Joint Genome Institute (JGI) 3300036934 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 606094401 1543417 590 16 981 26 SRX8379641 Unrestricted 5.3 Metagenome 3300029789 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 026_10_28_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029789 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 224451305 336661 266 0 379 0 0.0 Metagenome 3300064936 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 740 in Bashaw, Alberta, Canada - S00JY_0250 Microbiome Insights 3300064936 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.40477497 -112.5728765 76854462 112303 50 0 95 0 0.0 Metagenome 3300049301 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA4 DOE Joint Genome Institute (JGI) 3300049301 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 225883496 591668 325 1 601 3 Unrestricted 7.33 Metagenome 3300071151 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone National Park, Wyoming, USA - YELL_048-M-20200709-COMP-DNA1 3300071151 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 15799041 50143 107 14 182 28 0.0 Metagenome 3300025393 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from China - AD_SCU002_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025393 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 30.66 104.06 198006192 292645 139 0 192 1 SRX2339078 Unrestricted 0.0 Metagenome 3300040240 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_043-M-20160727-COMP-DNA1 Battelle Memorial Institute 3300040240 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 7267016 22312 61 1 128 0 0.0 Metagenome 3300012802 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched chicken feces microbial communities from UW Madison campus, WI, USA - DID2882_E24_Xylan MG DOE Joint Genome Institute (JGI) 3300012802 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie Yes 29545786 Host-associated Birds Large intestine Digestive system Fecal feces 43.073 -89.4011 66984622 80990 70 0 90 0 SRX3564810 Unrestricted 0.0 Metagenome 3300006138 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t14_683M_control - microbial_metagenome University of Texas Southwestern Medical Center 3300006138 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 252094483 493758 187 1 230 2 0.0 Metagenome 3300034147 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17 DOE Joint Genome Institute (JGI) 3300034147 Metagenome Analysis metaspades v. 3.13.0 Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Aquatic Sediment Floodplain Unclassified sediment 38.9229 -106.9499 787848854 1906973 539 13 954 22 SRX7630720 Unrestricted 7.11 Metagenome 3300054068 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin06_60_metaG re-annotation DOE Joint Genome Institute (JGI) 3300054068 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 689438929 1171221 231 0 410 0 SRX3293029 0.0 Metagenome 3300024429 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from South Pacific Ocean to uncover new lineages of life (NeLLi) - Chile_00310 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300024429 Metagenome Analysis spades v. 3.11.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Oceanic Marine Sediment Deep subsurface -44.283 -75.865 986805166 2084361 722 20 1116 28 SRX3203371 Unrestricted 0.0 Metagenome 3300029767 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 044_10_31_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029767 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 199378033 247591 232 0 325 0 0.0 Metagenome 3300039327 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 229_B Beijing Genomics Institute (BGI) 3300039327 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 23578260 26539 13 0 18 0 ERX491009 0.0 Metagenome 3300001426 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S2 DOE Joint Genome Institute (JGI) 3300001426 Metagenome Analysis Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 6899636 18249 88 9 170 8 SRX1989933 Unrestricted 0.0 Metagenome 3300040596 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone Northern Range (Frog Rock), Northern Rockies, WY, USA - YELL_048-M-20180712-COMP-DNA1 Battelle Memorial Institute 3300040596 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 44.95348 -110.53914 1764837 5964 30 3 40 7 0.0 Metagenome 3300044914 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_6_B DOE Joint Genome Institute (JGI) 3300044914 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 149893291 195947 108 1 106 1 Unrestricted 73.06 Metagenome 3300042620 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Roisinitermes ebogoensis from Ebogo II, Mbalmayo, Cameroon - Roe453 Eurofins MWG Operon 3300042620 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 3.377917 11.458056 1033418740 1088301 167 29 193 45 0.0 Metagenome 3300006545 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 823052294 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006545 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 34501236 70468 49 0 83 0 0.0 Metagenome 3300048763 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 P3 10-14 DOE Joint Genome Institute (JGI) 3300048763 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3535 19.0473 517824900 734171 131 15 193 15 Restricted 13.18 Metagenome 3300025158 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-04 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025158 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 748211008 1285035 634 45 994 51 SRX3197880 Unrestricted 0.0 Metagenome 3300031234 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2 DOE Joint Genome Institute (JGI) 3300031234 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3532 19.0477 6722079910 12703659 1713 128 2648 212 SRX5358028 Unrestricted 12.43 Metagenome 3300013443 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100601 University of Pennsylvania 3300013443 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12364079 21896 12 0 20 0 SRX756153 0.0 Metagenome 3300026799 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06.2A2a-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026799 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 24042988 80532 84 4 136 5 SRX2576255 Unrestricted 0.0 Metagenome 3300042204 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D10_2 DOE Joint Genome Institute (JGI) 3300042204 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 455032989 722849 235 21 322 30 Unrestricted 25.48 Metagenome 3300022419 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1BM2 JM71 AGRF 3300022419 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 49656064 90346 25 0 60 0 0.0 Metagenome 3300071076 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_002-M-20190312-COMP-DNA1 3300071076 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 544512 1899 17 2 37 3 0.0 Metagenome 3300000254 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 100m DOE Joint Genome Institute (JGI) 3300000254 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 193024673 441594 152 4 294 10 Unrestricted 0.0 Metagenome 3300029388 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 096_4_29_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029388 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 186724973 261915 236 0 324 0 0.0 Metagenome 3300026153 *Microbiome Permanent Draft Anaerobic reactors microbiome study Activated sludge microbial communities from lab. scaled anaerobic digester in Belvaux, Luxembourg - ACS2-21 University of Luxembourg 3300026153 Metagenome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 49.506216 5.943617 322891066 392314 90 3 233 10 0.0 Metagenome 3300045202 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_4_C DOE Joint Genome Institute (JGI) 3300045202 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 189860871 228572 111 1 130 2 Unrestricted 76.68 Metagenome 3300048622 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 soil DOE Joint Genome Institute (JGI) 3300048622 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.587973 -123.19406 6.57 278569692 520363 214 9 398 19 Unrestricted 20.01 Metagenome 3300042343 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME20Oct2001-rr0739 DOE Joint Genome Institute (JGI) 3300042343 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 502810501 814596 202 15 291 25 Unrestricted 25.1 Metagenome 3300030492 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N1_2 DOE Joint Genome Institute (JGI) 3300030492 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 468735190 1072430 795 118 1295 203 SRX5799361 Unrestricted 11.47 Metagenome 3300028506 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 5 Selected contigs with viral hallmark genes 2 Autonomous University of Barcelona 3300028506 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 1152454 1627 0 0 0 0 0.0 Metagenome 3300017507 *Microbiome Permanent Draft Bras del Port Mayo 2015 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CM2 May 2015 University of Valencia 3300017507 Metagenome Analysis idba.1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Non-marine hypersaline water 38.1922 -0.5918 38913532 131742 0 0 2 0 0.0 Metagenome 3300005133 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F15 DOE Joint Genome Institute (JGI) 3300005133 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 53276938 84949 84 0 114 0 SRX3195127 Unrestricted 0.0 Metagenome 3300042924 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Aug2013-rr0356 DOE Joint Genome Institute (JGI) 3300042924 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1311883266 2010214 413 29 527 50 Unrestricted 16.46 Metagenome 3300043266 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from Nevada, United States - King's Pool (KP_S3) (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043266 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified Desert spring 36.4015 -116.2738 7.46 213906898 306194 83 27 158 42 SRX9167017 Unrestricted 164.83 Metagenome 3300044610 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME26Sep2000-rr0949 DOE Joint Genome Institute (JGI) 3300044610 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 870652739 1272921 354 49 476 63 Unrestricted 20.37 Metagenome 3300009463 *Microbiome Permanent Draft Host-associated microbial communities of aphids from plants in several locations around USA Microbial communities of aphids from fava bean in Tucson, AZ, USA - Aphis craccivora NM101509 seqcov University of Texas, Austin 3300009463 Metagenome Analysis CLC Genomics released per JGI data release policy Yes Yes becky.chong@utexas.edu Rebecca Chong No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified fava bean 32.23184 -110.950699 306114060 151320 1 2 1 1 0.0 Metagenome 3300045922 *Microbiome Permanent Draft Microbial mat bacterial communities from hot springs in Waikite Valley, Taupo Volcanic Zone, New Zealand Microbial mat bacterial communities from hot spring in Waikite Valley, New Zealand - LMW_ETR_NZ_2018_Waikite_5_1 DOE Joint Genome Institute (JGI) 3300045922 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes LMWARD@post.harvard.edu Lewis Ward No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats microbial mat -38.3276 176.3016 785619576 1030039 350 29 441 37 Unrestricted 54.33 Metagenome 3300020018 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - U2s2 DOE Joint Genome Institute (JGI) 3300020018 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9354 -106.9424 318811454 698292 239 7 527 11 SRX3948167, SRX3948168 Unrestricted 0.0 Metagenome 3300035692 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 DOE Joint Genome Institute (JGI) 3300035692 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1125 -122.987 2858820816 6764269 1537 157 2698 241 SRX8289148 Unrestricted 7.86 Metagenome 3300050257 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_8 DOE Joint Genome Institute (JGI) 3300050257 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.6 161.083 321061509 433584 35 24 50 29 SRX18235975 Restricted 31.54 Metagenome 3300037135 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPN1-2-X1 DOE Joint Genome Institute (JGI) 3300037135 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3568 19.0503 412033991 704403 155 12 194 23 SRX8861980 Unrestricted 24.49 Metagenome 3300044299 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T28 S DOE Joint Genome Institute (JGI) 3300044299 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7258 -64.1908 373276180 880035 17 8 52 10 Unrestricted 40.31 Metagenome 3300034415 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI019838-56 Beijing Genomics Institute (BGI) 3300034415 Metagenome Analysis Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 146897401 180525 101 1 153 0 0.0 Metagenome 3300039834 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_005-M-20170710-COMP-DNA1 Battelle Memorial Institute 3300039834 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 28733371 76923 72 10 123 8 0.0 Metagenome 3300043823 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Likouala River, Epena, Congo - CONGO_040 DOE Joint Genome Institute (JGI) 3300043823 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 1.3199 17.4402 284838584 699149 172 33 267 74 Unrestricted 19.98 Metagenome 3300038374 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Lebed Lake, Antarctica - #34 Australian Centre for Ecogenomics 3300038374 Metagenome Analysis Spades v. 3.13.0 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.618533 78.2232 231277200 408803 90 5 119 20 0.0 Metagenome 3300025419 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_11_100 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025419 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 187628138 343093 119 3 179 2 SRX3003286 Unrestricted 0.0 Metagenome 3300045204 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_4_B DOE Joint Genome Institute (JGI) 3300045204 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 183548051 216943 109 2 140 1 Unrestricted 106.51 Metagenome 3300029549 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P017V6 Beijing Genomics Institute (BGI) 3300029549 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 181510658 216392 154 0 218 0 0.0 Metagenome 3300037367 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 1-5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037367 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0472 977569707 1965102 331 17 560 38 SRX4415331, SRX8128004 Unrestricted 0.0 Metagenome 3300027727 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027727 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 537423756 1303280 260 38 544 63 SRX3311938 Unrestricted 0.0 Metagenome 3300009003 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.725 DOE Joint Genome Institute (JGI) 3300009003 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 443085607 822475 539 188 752 321 SRX2753515 Unrestricted 0.0 Metagenome 3300042202 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D0_3 DOE Joint Genome Institute (JGI) 3300042202 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 563840481 861604 268 0 411 1 Unrestricted 24.32 Metagenome 3300009795 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N3_40_50 DOE Joint Genome Institute (JGI) 3300009795 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37379502 -119.2722385 99595350 235702 164 4 352 4 SRX2522696 Unrestricted 0.0 Metagenome 3300000252 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P16 1000m DOE Joint Genome Institute (JGI) 3300000252 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 49.283333 -134.666667 42773739 119520 46 13 78 24 Unrestricted 0.0 Metagenome 3300069235 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Caribou Creek Watershed, Alaska, USA - BONA_004-O-20210707-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069235 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Terrestrial soil 65.190675 -147.536694 3076162113 6116998 835 258 1354 444 0.0 Metagenome 3300029616 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36005 Beijing Genomics Institute (BGI) 3300029616 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 234475743 284023 184 0 312 0 0.0 Metagenome 3300020290 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000749 (ERX556131-ERR599154) CEA Genoscope 3300020290 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -20.9724 -35.2742 149043537 381684 122 15 252 23 0.0 Metagenome 3300014047 *Microbiome Permanent Draft Ruminant gut microbial communities from various locations in USA Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1003 University of Missouri 3300014047 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen 41.314168 -105.584589 312807947 585920 136 10 315 14 SRX331702 0.0 Metagenome 3300013675 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00424 Weill Cornell Medical College 3300013675 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.94 14700981 22253 10 0 11 0 SRX822393 0.0 Metagenome 3300029471 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001954-56 Beijing Genomics Institute (BGI) 3300029471 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 122753791 153205 93 0 112 0 0.0 Metagenome 3300061179 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_001-O-20210621-comp-1 DOE Joint Genome Institute (JGI) 3300061179 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 45.844033 -121.999068 3068129637 4918035 709 197 1082 281 Unrestricted 15.05 Metagenome 3300002133 *Microbiome Permanent Draft Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - S2T7BSa (116f) 3300002133 Metagenome Analysis released by JGI data releasing policy No Yes daniel.herlemann@io-warnemuende.de, daniel.herlemann@emu.ee Daniel Herlemann, Daniel P. Herlemann No Environmental Aquatic Unclassified Unclassified Unclassified Marine 57.305 20.0745 168471753 739659 238 50 493 67 0.0 Metagenome 3300028739 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E1_3 DOE Joint Genome Institute (JGI) 3300028739 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 508408466 1228354 622 51 1001 96 SRX5799336 Unrestricted 0.0 Metagenome 3300070216 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_002-O-20200603-COMP-DNA1 3300070216 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 55259276 163146 87 27 165 46 0.0 Metagenome 3300000849 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from University of Liverpool Illum_500pgNex_Meta-Velvet University of Liverpool 3300000849 Metagenome Analysis Meta-Velvet released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 13729508 26830 54 0 83 0 0.0 Metagenome 3300030494 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2) (version 2) DOE Joint Genome Institute (JGI) 3300030494 Metagenome Analysis spades v. 3.12.0 Yes Yes loy@microbial-ecology.net; Michael.Pester@dsmz.de Alexander Loy; Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.1318 11.881 876098598 1779823 208 4 331 4 Unrestricted 0.0 Metagenome 3300020405 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B000000532 (ERX556129-ERR599012) CEA Genoscope 3300020405 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -22.3407 40.3444 843275732 2209535 371 55 644 91 ERX556129 0.0 Metagenome 3300014967 *Microbiome Permanent Draft Microbial mat communities from high arctic lakes Freshwater microbial mat microbial communities from Canadian High Arctic Lake 9K, Kuujjuarapik, Canada - Sample L9Ka Laval University 3300014967 Metagenome Analysis IDBA_UD released by Adrien Vigneron No Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified microbial mat 55.275009 -77.758484 933455729 4110994 1007 70 2248 171 0.0 Metagenome 3300014655 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin01_10_metaG DOE Joint Genome Institute (JGI) 3300014655 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1201575385 2387332 637 50 953 103 SRX3291937 Unrestricted 6.39 Metagenome 3300042922 *Microbiome Permanent Draft Wetland soil microbial communities from various locations Soil microbial communities from agricultural land in Fort Collins, Colorado, USA - L_E1_T20_A DOE Joint Genome Institute (JGI) 3300042922 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6529 -104.9995 1287952180 1754947 504 56 690 99 Unrestricted 42.97 Metagenome 3300009846 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA1 University of New South Wales 3300009846 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 41942881 60174 29 3 37 1 0.0 Metagenome 3300039832 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_042-M-20170627-COMP-DNA1 Battelle Memorial Institute 3300039832 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 29118432 75314 62 6 116 9 0.0 Metagenome 3300026978 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and P1 (3) (SPAdes) DOE Joint Genome Institute (JGI) 3300026978 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 84036831 124817 57 0 63 0 SRX3311644 Unrestricted 0.0 Metagenome 3300046749 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_190220.NP1 DOE Joint Genome Institute (JGI) 3300046749 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 636948393 1333376 407 30 627 60 Unrestricted 14.8 Metagenome 3300000181 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P4 500m DOE Joint Genome Institute (JGI) 3300000181 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 48.65 -126.666667 110583281 262570 143 8 245 14 Unrestricted 0.0 Metagenome 3300035694 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 27_4.5_M_3 DOE Joint Genome Institute (JGI) 3300035694 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1866 -2.2146 1951835761 4303783 988 79 1671 145 SRX8234988 Unrestricted 8.3 Metagenome 3300025605 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR3_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025605 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 36.29 139.38 399164528 667290 348 0 495 0 SRX2157910 Unrestricted 0.0 Metagenome 7000000711 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 159490532 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000711 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 11216488 18503 0 0 0 0 SRX024638, SRX024637 0.0 Metagenome 3300028225 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS378 with 0.8UM filter - spades JGI facility at Oak Ridge National Laboratory 3300028225 Metagenome Analysis Spades v. 3.11.1 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 35370488 62369 32 2 32 3 0.0 Metagenome 3300034008 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 38SMC DOE Joint Genome Institute (JGI) 3300034008 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological biocrust 34.3778 -117.6098 348254223 763492 432 14 757 24 SRX7621457 Unrestricted 7.77 Metagenome 3300037389 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18B_2_0 mgh University of Alberta 3300037389 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 34656366 45851 14 1 22 1 0.0 Metagenome 3300028905 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 53_12M Beijing Genomics Institute (BGI) 3300028905 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 86527099 106195 66 0 89 0 ERX491179 0.0 Metagenome 3300038372 *Microbiome Permanent Draft Freshwater sediment microbial communities from Alaska Lake sediment microbial communtites from St. Paul Island, Alaska - PH082_579 University of California, Santa Cruz 3300038372 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Sediment Lake sediment 57.18 -170.25 4090204 14290 11 0 15 0 0.0 Metagenome 3300020546 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 03OCT2011 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020546 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 139744759 269763 109 29 172 47 SRX1989663 Unrestricted 0.0 Metagenome 3300028673 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-B DOE Joint Genome Institute (JGI) 3300028673 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 252267333 648231 293 12 506 23 SRX5339403 Unrestricted 10.04 Metagenome 3300021552 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Upa-Upasina ""control"", co15aic 200bp no Eukaryotes last" University of New South Wales 3300021552 Metagenome Analysis IDBA-UD released by Emmanuelle BOTTE Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Coelocarteria singaporensis (marine sponge) -9.828217 150.820517 111140844 200708 59 2 105 2 0.0 Metagenome 3300013866 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - In2P-11 SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300013866 Metagenome Analysis SPAdes 3.10.0 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1 -118.1 57378361 81294 16 19 28 24 SRX5057084 Unrestricted 0.0 Metagenome 3300040995 *Microbiome Permanent Draft Freshwater lake viral communities from Lake Michigan, near Chicago, USA Freshwater lake viral communities from Lake Michigan, near Chicago, USA- Montrose140527.1V Genewiz Inc., Loyola University 3300040995 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.9668 -87.637 25577493 53453 24 0 40 0 0.0 Metagenome 3300000578 *Microbiome Permanent Draft Saline water microbial communities from Isla Cristina saltern, Spain Saline water microbial communities from Isla Cristina saltern, Spain, sample IC20 GATC-Biotech AG, Konstanz, Germany 3300000578 Metagenome Analysis released per JGI data release policy No Yes abf@us.es Ana Fernandez No Environmental Aquatic Intertidal zone Marine Salt marsh Saline water 37.193758 -7.32017 0 0 0 0 0 0 0.0 Metagenome 3300040420 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_059-O-20160720-COMP-DNA1 Battelle Memorial Institute 3300040420 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 4688370 14338 31 1 59 3 0.0 Metagenome 3300002961 *Microbiome Draft Wetland microbial communities from Twitchell Island in the Sacramento Delta Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk v8 (version 8) DOE Joint Genome Institute (JGI) 3300002961 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes stringe@lbl.gov Susannah Tringe Yes 25991679 Environmental Aquatic Wetlands Marine Sediment Wetland 38.107057 -121.647578 560427570 1398510 1008 8 1767 22 Unrestricted 0.0 Metagenome 2124908016 *Microbiome Permanent Draft Environmental microbial communities from LANL Sample 642 Los Alamos National Laboratory 2124908016 Metagenome Analysis released per JGI data release policy No Yes xie@lanl.gov Gary Xie No Environmental Aquatic Unclassified Freshwater Unclassified 111292282 255391 176 17 350 0 0.0 Metagenome 3300053143 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 endosphere DOE Joint Genome Institute (JGI) 3300053143 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.588011 -123.192906 686680737 1015887 212 242 361 284 Unrestricted 26.58 Metagenome 3300001590 *Microbiome Permanent Draft Saline water concentrator pond microbial communities from Bras del Port saltern, Santa Pola, Spain Saline water concentrator pond microbial communities from Bras del Port saltern, Spain - SS19L GATC-Biotech AG, Konstanz, Germany 3300001590 Metagenome Analysis released per JGI data release policy No Yes abf@us.es Ana Fernandez No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Saline water concentrator pond 38.11 -0.36 10197603 64740 7021 164 15673 239 0.0 Metagenome 3300006066 *Microbiome Permanent Draft Mini-Metagenome - Microbial communities from the Yellowstone National Park Hotspring Microbial Communities from Sylvan Springs, Spring Unknown 11.1A, Yellowstone National Park, Wyoming, USA - Mini-Metagenomics Stanford University 3300006066 Metagenome Analysis spades 3.0 released per JGI data release policy No Yes brianyu@stanford.edu, brian.yu@czbiohub.or Brian Yu No Environmental Aquatic Warm (34-42C) Thermal springs Unclassified hotspring 44.699383 -110.767717 4.3 7379352 12631 7 0 15 0 0.0 Metagenome 3300035425 *Microbiome Permanent Draft Mouse fecal microbial communities from various locations Fecal microbial communities from mouse strain SV129 in Denmark - 1A-dyr5-06 Beijing Genomics Institute (BGI) 3300035425 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 55.676097 12.568337 41942672 67831 33 0 53 0 0.0 Metagenome 3300049677 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_A_3_control DOE Joint Genome Institute (JGI) 3300049677 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 138159424 314954 379 21 691 33 Unrestricted 9.61 Metagenome 3300033431 *Microbiome Permanent Draft Hot spring microbial communities from different geyser basins in Yellowstone National Park, WY, United States Hot spring water microbial communities from Geyser Creek Basin, Yellowstone National Park, WY, United States - GCR.EP_P DOE Joint Genome Institute (JGI) 3300033431 Metagenome Analysis spades v. 3.13.0 Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Unclassified Thermal springs Unclassified hot spring water 44.6904 -110.7291 213599432 526244 118 0 191 2 SRX7584343 Unrestricted 325.14 Metagenome 3300032245 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime Ecozone, Canada - Lake 07-031 Genome Quebec 3300032245 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.274682 -66.075044 595099957 1160943 371 88 627 192 0.0 Metagenome 3300002041 *Microbiome Permanent Draft Human gut microbial communities from Canada, containing Sinorhizobium meliloti Human gut microbial communities 3300002041 Metagenome Analysis released by JGI data releasing policy No Yes finan@mcmaster.ca Turlough Finan No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 46840 49 0 0 0 0 0.0 Metagenome 3300011599 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00383 Weill Cornell Medical College 3300011599 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.96 24896021 38946 18 1 27 0 SRX822354 0.0 Metagenome 3300012804 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - DID2877_E24_Lignin MG DOE Joint Genome Institute (JGI) 3300012804 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 63445060 87862 58 0 82 0 SRX3566179 Unrestricted 0.0 Metagenome 3300025973 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025973 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.000706 -121.624306 74143927 171432 125 3 231 2 SRX7144829 Unrestricted 0.0 Metagenome 3300038690 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Natural salt marsh sediment microbial communities from Abbotts Hall, United Kingdom - S AHNM 2B University of York 3300038690 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Natural salt marsh sediment 51.7865 0.86085 24662310 57100 36 0 67 0 0.0 Metagenome 3300006317 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 370425937 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006317 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 173045865 238418 133 0 197 0 0.0 Metagenome 3300006946 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG DOE Joint Genome Institute (JGI) 3300006946 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Host-associated Plants Nodule Roots Unclassified Root nodules 34.0722 -118.4441 344301471 716550 600 24 912 54 SRX2918665 Unrestricted 0.0 Metagenome 3300036932 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 E2 20-24 DOE Joint Genome Institute (JGI) 3300036932 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0466 709973652 1381754 318 6 556 12 SRX8138425 Unrestricted 10.31 Metagenome 3300029878 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35366 Beijing Genomics Institute (BGI) 3300029878 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 177064436 214867 128 1 188 0 0.0 Metagenome 3300004684 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE23Jun09 (version 2) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300004684 Metagenome Analysis MEGAHIT v0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 236368871 675530 184 76 304 178 SRX2565134 Unrestricted 0.0 Metagenome 3300007302 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 158984779 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007302 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 13554487 27520 23 0 38 0 SRX023598, SRX023597 0.0 Metagenome 3300046656 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 soil DOE Joint Genome Institute (JGI) 3300046656 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.120845 -123.269575 5.58 838830840 1403274 282 13 510 21 Unrestricted 12.82 Metagenome 3300037788 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - ARW7_20151102 DOE Joint Genome Institute (JGI) 3300037788 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 159687721 251956 86 7 111 3 SRX9140278 Unrestricted 44.36 Metagenome 3300048920 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 DOE Joint Genome Institute (JGI) 3300048920 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Unclassified Roots Unclassified Root 42.40581 -85.40228 998696760 1414401 320 52 400 80 Unrestricted 38.92 Metagenome 3300048495 *Microbiome Permanent Draft Marine and freshwater sediment microbial communities from various locations Marine sediment microbial communities from Caspian Sea - Caspian_Core_2_12-16_cm DOE Joint Genome Institute (JGI) 3300048495 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes smtechtm@mtu.edu Stephen Techtmann No Environmental Aquatic Sediment Marine Unclassified Marine sediment 39.9902 51.5008 450118707 1070326 388 0 619 1 Unrestricted 6.32 Metagenome 3300013223 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100437 University of Pennsylvania 3300013223 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 18471285 36723 13 0 19 1 SRX756561 0.0 Metagenome 3300069328 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_060-O-20160719-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069328 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 90760022 270340 161 27 279 57 0.0 Metagenome 3300000097 *Microbiome Draft Passalidae beetle gut microbial communities from Costa Rica Passalidae beetle gut microbial communities from Costa Rica - Adult (4MA+4BA+4MSA) v1 DOE Joint Genome Institute (JGI) 3300000097 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes davidhs@lsi.umich.edu, davidhs@umich.edu David Sherman No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Passalidae beetle gut 10.207151 -84.007673 142922252 425031 37 0 67 0 Unrestricted 0.0 Metagenome 7000000551 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 158479027 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000551 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 12381386 27042 0 0 0 0 0.0 Metagenome 3300011113 *Microbiome Finished Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep Chunlab, Inc 3300011113 Metagenome Analysis SPAdes 3.8.2 released by JGI data releasing policy No Yes krmoon518@gmail.com; chojc@inha.ac.kr Kira Moon; Jang-Cheon Cho No Environmental Aquatic Lake Freshwater Unclassified Freshwater 37.947421 127.818872 19395483 26366 0 0 0 0 0.0 Metagenome 3300013903 *Microbiome Permanent Draft Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 244 Chalmers University of Technology 3300013903 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 78210925 174093 95 1 196 3 SRX193529 0.0 Metagenome 3300031232 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3 DOE Joint Genome Institute (JGI) 3300031232 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0477 6617009191 15804697 3027 255 5253 437 SRX5358015 Unrestricted 6.97 Metagenome 3300001246 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 23JUL2008 deep hole epilimnion v2 (version 3) DOE Joint Genome Institute (JGI) 3300001246 Metagenome Analysis released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 6511556 9686 13 2 18 3 SRX3310952 Unrestricted 0.0 Metagenome 3300022158 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v3) (version 3) DOE Joint Genome Institute (JGI) 3300022158 Metagenome Analysis spades v. 3.11.1-check Yes Yes bcampb7@clemson.edu; chenf@umces.edu Barbara Campbell; Feng Chen Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.124826 -75.260873 90129882 238730 6 0 14 0 SRX3786003, SRX2745129, SRX3786002 Unrestricted 0.0 Metagenome 3300024249 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK17 DOE Joint Genome Institute (JGI) 3300024249 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 196293302 493828 282 23 487 38 SRX4547513 Unrestricted 9.13 Metagenome 3300044912 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater bacterial communities from Lake Mendota, Wisconsin, United States - ME_2020-10-19_15m_Bacteria_A DOE Joint Genome Institute (JGI) 3300044912 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 581759006 908115 259 90 345 124 Unrestricted 19.86 Metagenome 3300046348 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_130 DOE Joint Genome Institute (JGI) 3300046348 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9802 -106.9905 43036004 132852 277 26 643 22 Restricted 0.0 Metagenome 3300014899 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01528 Weill Cornell Medical College 3300014899 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.99 17147120 31987 36 1 28 1 SRX823404 0.0 Metagenome 3300039805 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_047-M-20160718-COMP-DNA1 Battelle Memorial Institute 3300039805 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 31977375 83598 40 0 70 0 0.0 Metagenome 3300029894 *Microbiome Permanent Draft Cryoconite microbial communities around the Greenland ice sheet Cryoconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_L-A1b DMAC, Technical University of Denmark 3300029894 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Ice Freshwater Cryoconite Cryconite 65.38 -38.53 256573678 462781 109 10 167 11 SRX2579854 0.0 Metagenome 3300036673 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C4-5B DOE Joint Genome Institute (JGI) 3300036673 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 36772578 123790 112 2 193 3 SRX8786857 Unrestricted 3.84 Metagenome 3300037104 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 E-1-X DOE Joint Genome Institute (JGI) 3300037104 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0467 753661912 1396790 468 2 691 3 SRX8160423 Unrestricted 8.61 Metagenome 3300027195 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1370A-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027195 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.234 -123.9135 61085788 138131 158 52 254 75 SRX2753584 Unrestricted 0.0 Metagenome 3300025632 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025632 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 376631801 741983 268 112 316 167 SRX2999529 Unrestricted 0.0 Metagenome 3300023109 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG DOE Joint Genome Institute (JGI) 3300023109 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca; shallam@interchange.ubc.ca Sean Crowe; Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5847 -123.5008 1035468663 1962128 449 70 642 115 SRX4482539 Unrestricted 19.99 Metagenome 3300042729 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - Dsc2_a23.5 Re-assembly Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042729 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1237 -89.1404 35799052 41779 8 3 14 7 SRX5234788 0.0 Metagenome 3300047306 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Yenisei River, Krasnoyarsk Krai, Russia - Yenisey 2004-2 DOE Joint Genome Institute (JGI) 3300047306 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 69.3833 86.15 264261660 581911 301 81 539 127 Unrestricted 14.21 Metagenome 3300000594 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Coal bed microbial communities from San Jean Basin, New Mexico, USA - CG19 McGill University 3300000594 Metagenome Analysis No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 37.0 -108.0 7.07 2121302 4128 8 0 14 0 0.0 Metagenome 3300026690 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A4a-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300026690 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 11627122 35571 103 4 180 8 SRX1991134 Unrestricted 0.0 Metagenome 3300041859 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_355 MetaG AgResearch, New Zealand, Mosgeil 3300041859 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1467504235 2960541 297 22 1089 32 0.0 Metagenome 3300046404 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA090-CHB DOE Joint Genome Institute (JGI) 3300046404 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6359 -83.4952 210875455 602275 256 14 464 20 Unrestricted 7.66 Metagenome 3300014782 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS68_0 University of Hohenheim 3300014782 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 119994586 192825 74 0 153 0 0.0 Metagenome 3300026219 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Maryland, USA - DAQMD-015 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026219 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 55041762 115087 45 9 82 26 SRX2770403 Unrestricted 0.0 Metagenome 3300005170 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Worm MetaG Olavius vacuus BAHAMAS.1 (version 1) (version 2) DOE Joint Genome Institute (JGI) 3300005170 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 763298446 1499350 2 3 5 21 SRX3299593, SRX3299594 Unrestricted 0.0 Metagenome 3300043579 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 056-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043579 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.923 -106.9496 659786661 1549424 432 11 863 24 Unrestricted 7.51 Metagenome 3300026884 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05K5-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026884 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 45306747 147421 140 8 238 13 SRX2576208 Unrestricted 0.0 Metagenome 3300043441 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from California, United States - teakettle_2019_sw_WHONDRS-S19S_0008 DOE Joint Genome Institute (JGI) 3300043441 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 36.9612 -119.0282 223853213 428975 399 88 725 159 Unrestricted 37.21 Metagenome 3300070280 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Alaska, USA - DEJU_048-O-20180621-COMP-DNA1 3300070280 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 72150084 203897 110 37 234 57 0.0 Metagenome 3300042235 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D235_2 DOE Joint Genome Institute (JGI) 3300042235 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 189990510 274830 143 8 221 11 Unrestricted 80.8 Metagenome 3300018053 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1 DOE Joint Genome Institute (JGI) 3300018053 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 .6 723935902 1505879 678 8 1285 27 SRX3939332 Unrestricted 5.13 Metagenome 3300044559 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TS49 DOE Joint Genome Institute (JGI) 3300044559 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.4139 74457197 90701 87 1 92 4 SRX12667031 Unrestricted 241.99 Metagenome 3300015179 *Microbiome Permanent Draft Human fecal microbial communities from infant diaper, Dhaka, Bangladesh Human fecal microbial communities from infant diaper, Dhaka, Bangladesh - DMDT001F Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300015179 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes dhtaft@ucdavis.edu Diana Taft No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant feces 23.8103 90.4125 21294804 33064 19 0 30 0 0.0 Metagenome 3300046062 *Microbiome Permanent Draft Halite microbial communities from Atacama Desert, Chile Halite microbial communities from Yungay, Atacama Desert, Chile - YG3 Novogene 3300046062 Metagenome Analysis metaWRAP v. 1.3.2 No Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Halite Rock-dwelling (endoliths) Unclassified Halite -24.086 -69.904 102852749 124364 15 1 21 3 0.0 Metagenome 3300007908 *Microbiome Permanent Draft Anaerobic oil degrading microbial communities from River Tyne estuarine sediment Microbial communities from sediment of the River Tyne Estuary, UK - Pasteurized_686d_1 University of Liverpool 3300007908 Metagenome Analysis IDBA-DB released per JGI data release policy No Yes ana.suarez-suarez@ncl.ac.uk, ian.head@ncl.ac.uk; ana.suarez-suarez@ncl.ac.uk Ana Su?rez-Su?rez, Ian Head; Ana Suarez-Suarez No Environmental Aquatic Unclassified Sediment Unclassified sediment 54.9632021 -1.6348029 76784824 150934 69 0 140 0 0.0 Metagenome 3300020432 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100002052 (ERX556103-ERR599100) CEA Genoscope 3300020432 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 25.7109 -88.4916 1118109919 2658312 609 62 1134 134 0.0 Metagenome 3300042328 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME22Oct2002-rr0751 DOE Joint Genome Institute (JGI) 3300042328 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 625270104 1030184 267 48 364 63 Unrestricted 26.53 Metagenome 3300031925 *Microbiome Permanent Draft Microbial communities from the deep biosphere Freshwater microbial communities from methane shale flowback fluids - Sample_06272012 re-assembly Marine Biological Laboratory 3300031925 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Groundwater Freshwater Unclassified Freshwater 6.22 2518 62724391 109699 16 1 44 0 SRX1008490 0.0 Metagenome 3300070331 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_073-O-20200714-COMP-DNA1 3300070331 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 17730365 54773 55 10 119 19 0.0 Metagenome 3300007335 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763759525 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007335 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 205945221 348385 132 0 162 0 0.0 Metagenome 3300049259 *Microbiome Permanent Draft Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA - CNF8NT9 DOE Joint Genome Institute (JGI) 3300049259 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sydneyg@ucr.edu Sydney Glassman No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 33.6681 -117.456 2719646569 4229604 804 146 1352 203 Unrestricted 15.78 Metagenome 3300024183 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 3D DOE Joint Genome Institute (JGI) 3300024183 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 187988885 509576 210 32 305 40 SRX4457285 Unrestricted 22.57 Metagenome 3300005525 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom. Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG DOE Joint Genome Institute (JGI) 3300005525 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov, rmmckay@bgsu.edu Susannah Tringe, Robert M. McKay No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.69957 -83.2941 1723366905 4284940 1217 335 1719 670 SRX2832452 Unrestricted 0.0 Metagenome 3300057162 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Oscillatoria princeps RMCB-10 and co-occurring heterotrophs from microbial mat bacterial communities from Lunzer See, Austria - 20190426_36B (version 3) DOE Joint Genome Institute (JGI) 3300057162 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Aquatic Lake Freshwater Microbial mats Microbial mat 47.8529 15.0398 57737769 53357 23 0 22 0 Restricted 0.0 Metagenome 3300011844 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100228 University of Pennsylvania 3300011844 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 28984068 66606 48 0 86 0 SRX756673 0.0 Metagenome 3300001001 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN619 DOE Joint Genome Institute (JGI) 3300001001 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 35401 116 15 0 21 0 SRX1986992 Unrestricted 0.0 Metagenome 3300012341 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100621 University of Pennsylvania 3300012341 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 28248608 62488 22 0 37 0 SRX756473 0.0 Metagenome 3300021473 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L442-15m DOE Joint Genome Institute (JGI) 3300021473 Metagenome Analysis spades v. 3.11.1-check Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.775 -93.818 596286730 1212191 506 7 831 16 SRX3984352 Unrestricted 14.83 Metagenome 3300003817 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius sp. 2 HERON ISLAND DOE Joint Genome Institute (JGI) 3300003817 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 466462560 1128454 22 14 30 13 SRX2711969 Unrestricted 0.0 Metagenome 3300049842 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Alabama, USA - tombigeeriver_2019_sed_WHONDRS-S19S_0020 DOE Joint Genome Institute (JGI) 3300049842 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 31.85294 -88.15755 187844221 468672 326 6 700 10 Restricted 0.0 Metagenome 3300038978 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A34_35cm_12M University of Tennessee 3300038978 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 75468476 165765 62 5 139 8 SRX710604 0.0 Metagenome 3300022930 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L209-509C-1 DOE Joint Genome Institute (JGI) 3300022930 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 832423818 1757518 758 157 1076 216 SRX4801557 Unrestricted 9.96 Metagenome 3300023055 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0897-MG DOE Joint Genome Institute (JGI) 3300023055 Metagenome Analysis spades v. 3.11.1 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 311638532 487173 207 16 276 20 SRX4370383 Unrestricted 27.98 Metagenome 3300010397 *Microbiome Permanent Draft Terrestrial soil microbial communities with and without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4 DOE Joint Genome Institute (JGI) 3300010397 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tiedjej@msu.edu James Tiedje No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 42.3938 -85.3708 4830831977 10718541 2848 186 5019 371 SRX3295512 Unrestricted 0.0 Metagenome 3300002926 *Microbiome Permanent Draft Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease - 2012_BI_H10 3300002926 Metagenome Analysis IDBA-UD + SOAPdenovo + GAA made public per user request (Enrique Zozaya - 05/02/16 email) No Yes t.thomas@unsw.edu.au Torsten Thomas Yes 28419766 Host-associated Algae Unclassified Red algae Unclassified Delisea pulchra -33.59 151.13 435144138 1806036 128 101 272 220 0.0 Metagenome 3300003264 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_54_BLW_10 DOE Joint Genome Institute (JGI) 3300003264 Metagenome Analysis Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 103297761 246553 191 18 318 35 SRX2572737 Unrestricted 0.0 Metagenome 3300013821 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01521 Weill Cornell Medical College 3300013821 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.99 16083939 24672 19 1 24 1 SRX823397 0.0 Metagenome 3300006021 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - At.Am.e DOE Joint Genome Institute (JGI) 3300006021 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes avisel@lbl.gov, laila.partida@cinvestav.mx Axel Visel, Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.7658 -100.163 121341148 384536 518 37 928 71 SRX6855687 Unrestricted 0.0 Metagenome 3300002206 *Microbiome Permanent Draft Freshwater microbial community from Sao Paulo Zoo Lake, Brazil Freshwater microbial communities from San Paulo Zoo lake, Brazil - OCT 2012 3300002206 Metagenome Analysis SoapDeNovo released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Lake -23.651072 -46.620675 142653001 418258 7 3 55 9 0.0 Metagenome 3300035333 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_2b_27 mgh University of Alberta 3300035333 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified wastewater 56.7292 -111.3885 23813562 29012 18 0 21 0 0.0 Metagenome 3300065599 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 798 in Beiseker, Alberta, Canada - S00JY_0251 Microbiome Insights 3300065599 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.24546833 -113.3320866 165891830 240061 63 0 112 0 0.0 Metagenome 3300040256 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_001-O-20140516-COMP-DNA1 Argonne National Laboratory 3300040256 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 8106212 23073 32 5 75 5 ERX2134024 0.0 Metagenome 3300044719 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R DOE Joint Genome Institute (JGI) 3300044719 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 14.75 -16.85 711867729 1229092 325 40 536 57 Unrestricted 18.88 Metagenome 3300035678 *Microbiome Permanent Draft Forest soil microbial communities from Eldorado National Forest, California, USA Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_4.1 DOE Joint Genome Institute (JGI) 3300035678 Metagenome Analysis metaspades v. 3.13.0 Yes Yes ndove7@gmail.com Nicholas Dove No Environmental Terrestrial Temperate forest Soil Bulk soil soil 39.0352 -120.4422 2151128160 4845847 1311 91 2144 163 SRX8240142 Unrestricted 10.07 Metagenome 3300036905 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 S1 10-14 DOE Joint Genome Institute (JGI) 3300036905 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0475 340017194 563966 114 7 187 10 SRX8138670 Unrestricted 13.52 Metagenome 3300014544 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS65_24 University of Hohenheim 3300014544 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 86351711 145641 59 0 102 0 0.0 Metagenome 3300026372 *Microbiome Permanent Draft Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 F5 DOE Joint Genome Institute (JGI) 3300026372 Metagenome Analysis spades v. 3.11.1 Yes Yes ccraft@indiana.edu Chris Craft No Environmental Aquatic Wetlands Freshwater Sediment sediment 31.3377 -81.4644 114007101 330439 334 4 648 9 SRX4796513 Unrestricted 6.43 Metagenome 3300026994 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 P3 (2) (SPAdes) DOE Joint Genome Institute (JGI) 3300026994 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 108341113 166298 101 0 121 0 SRX3311656 Unrestricted 0.0 Metagenome 3300017464 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS376 with 0.1UM filter JGI facility at Oak Ridge National Laboratory 3300017464 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 21842910 58251 15 6 16 8 0.0 Metagenome 3300037523 *Microbiome Permanent Draft Soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA Soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA - S5.2016.0 DOE Joint Genome Institute (JGI) 3300037523 Metagenome Analysis metaspades v. 3.13.0 Yes Yes adina@iastate.edu Adina Howe No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.0127 -93.7445 1758850255 2944523 541 2 917 7 SRX9161662 Unrestricted 14.24 Metagenome 7000000658 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764305738 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000658 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 49233588 101425 0 0 0 0 0.0 Metagenome 3300011455 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00787 Weill Cornell Medical College 3300011455 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.81 -73.95 13397883 20244 16 0 19 0 SRX822753 0.0 Metagenome 3300050302 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_64 DOE Joint Genome Institute (JGI) 3300050302 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -75.858 159.974 517157325 807518 86 24 105 25 SRX18236977 Restricted 19.38 Metagenome 3300022463 *Microbiome Permanent Draft Industrial fuel microbial communities from aircraft samples near Hamburg, Germany Industrial fuel microbial communities from aircraft samples near Hamburg, Germany - 170807_BF_02 HPI Heinrich-Pette-Institut 3300022463 Metagenome Analysis IDBA_UD1.1.1 released by JGI data releasing policy No Yes wolfgang.streit@uni-hamburg.de; ines.krohn@uni-hamburg.de Wolfgang Streit; Ines KROHN No Engineered Industrial production Unclassified Engineered product Unclassified Industrial fuel 53.338 9.5152 132233983 164542 97 9 120 14 0.0 Metagenome 3300013185 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100226 University of Pennsylvania 3300013185 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 24636750 45733 17 0 14 0 SRX756675 0.0 Metagenome 3300008347 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764892411 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008347 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 124380991 200344 73 0 125 0 0.0 Metagenome 2084038022 *Microbiome Permanent Draft Hot spring microbial community from Yellowstone National Park, US Hot spring microbial community from Yellowstone National Park, USA - OSP DOE Joint Genome Institute (JGI) 2084038022 Metagenome Analysis JGI Released by Nikos bc they were more than 5 years old No Yes mkozubal@gmail.com Mark Kozubal Yes 23151644 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.560318 -110.708889 3.6 29471542 83480 24 4 54 0 0.0 Metagenome 3300002388 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 25JUL2011 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002388 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 33137430 79276 69 14 117 18 SRX1989652 Unrestricted 0.0 Metagenome 3300009419 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT DOE Joint Genome Institute (JGI) 3300009419 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 39.849 -81.036 461447819 889549 458 93 630 170 SRX2996494 Unrestricted 0.0 Metagenome 3300043140 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - MU_050217 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043140 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.8784 -89.3541 30787003 94871 111 19 182 19 SRX8889438 Unrestricted 11.38 Metagenome 3300025003 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-08 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025003 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 319813320 590821 319 23 480 38 SRX3197917 Unrestricted 0.0 Metagenome 3300061689 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0617 Microbiome Insights 3300061689 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 39384167 59650 61 5 124 6 0.0 Metagenome 3300005549 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG DOE Joint Genome Institute (JGI) 3300005549 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 5246415568 14518195 3674 123 6391 263 SRX2745033 Unrestricted 0.0 Metagenome 3300024932 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 73_LOW10 (SPAdes) DOE Joint Genome Institute (JGI) 3300024932 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 71464601 104660 23 0 27 0 SRX2720791 Unrestricted 0.0 Metagenome 3300045585 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Des Moines River, Iowa, USA - NASQAN2010_233 DOE Joint Genome Institute (JGI) 3300045585 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 40.7278 -91.9596 349584034 817593 437 131 729 205 Unrestricted 0.0 Metagenome 3300005616 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 DOE Joint Genome Institute (JGI) 3300005616 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 6319290453 18129189 4868 373 8011 673 SRX2782752 Unrestricted 0.0 Metagenome 3300035704 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in California, United States - CAC_6 DOE Joint Genome Institute (JGI) 3300035704 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil 35.5 -121.0 4687301120 9798990 1636 245 2896 413 SRX8383160 Unrestricted 9.36 Metagenome 3300025795 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025795 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.05246563 -121.76914021 205428819 410428 191 1 353 0 SRX7142764 Unrestricted 0.0 Metagenome 3300005471 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG DOE Joint Genome Institute (JGI) 3300005471 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 4930262566 12466515 2691 90 4639 179 SRX2744806 Unrestricted 0.0 Metagenome 3300031949 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197 DOE Joint Genome Institute (JGI) 3300031949 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9888 -108.3994 4417401086 9199904 2372 10 3995 41 SRX5783464 Unrestricted 13.02 Metagenome 7000000346 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159632143 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000346 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 82983408 157091 0 0 0 0 0.0 Metagenome 3300014053 *Microbiome Permanent Draft Contaminated water microbial communities from pond sediment in Lucknow, India Contaminated water microbial communities from Hexachlorocyclohexane (HCH) contaminated sediment in Lucknow, India - Pond Sediment University of Delhi 3300014053 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Pond Freshwater Sediment Contaminated water 26.5389 81.2022 231567166 869126 158 4 355 7 SRX700528 0.0 Metagenome 3300007094 *Microbiome Permanent Draft Freshwater lake microbial communities from Singapore - a non-axenic Oscillatoriales culture (M13A) Freshwater lake microbial communities from Singapore - a non-axenic Oscillatoriales culture (M13A) The Singapore Centre on Environmental Life Sciences Engineering 3300007094 Metagenome Analysis CLC Genomics Workbench 8 released per JGI data release policy No Yes boonfei@ualberta.ca BOONFEI TAN No Environmental Aquatic Lake Freshwater Unclassified freshwater lake 1.3991438 103.77518 392654142 543226 62 20 85 23 0.0 Metagenome 3300036852 *Microbiome Permanent Draft Soil microbial communities from fields in the western Corn Belt region, Nebraska, United States Metatranscriptome of soil microbial communities from fields in the western Corn Belt region, Nebraska, United States - Switchgrass plot 123, 120 kg/ha N, depth 1 DOE Joint Genome Institute (JGI) 3300036852 Metagenome Analysis metaspades v. 3.13.0 Yes Yes marty.schmer@ars.usda.gov Marty Schmer No Environmental Terrestrial Agricultural land Soil Unclassified soil 41.1681 -96.4119 1463955227 2275022 428 7 750 12 SRX8380216 Unrestricted 14.88 Metagenome 3300061667 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0415 Microbiome Insights 3300061667 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 423260342 587609 107 4 159 5 0.0 Metagenome 3300017779 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 18 SPOT_SRF_2010-12-16 DOE Joint Genome Institute (JGI) 3300017779 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 480656721 1122703 96 47 174 91 SRX7207127, SRX7207128 Unrestricted 0.0 Metagenome 3300027201 *Microbiome Permanent Draft Rhizosphere and bulk soil microbial communities from Harvard Forest, USA Bulk soil microbial communities from Harvard Forest, USA - 2Bulk_NRpos metaG (SPAdes) DOE Joint Genome Institute (JGI) 3300027201 Metagenome Analysis spades v. 3.11.1 Yes Yes deangelis@microbio.umass.edu Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Bulk soil bulk soil 42.5502 -72.1737 3753852 9764 13 4 17 13 Unrestricted 0.0 Metagenome 3300000416 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5 v5 (version 5) DOE Joint Genome Institute (JGI) 3300000416 Metagenome Analysis Velvet released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300000671 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 20 DOE Joint Genome Institute (JGI) 3300000671 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 4712921 14950 22 0 50 0 SRX4339793 Unrestricted 0.0 Metagenome 3300014761 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS60_3 University of Hohenheim 3300014761 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 93579410 145818 55 0 91 0 0.0 Metagenome 3300025846 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-211 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025846 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.290565 -156.788622 645952607 1286669 429 1 696 5 SRX1990904 Unrestricted 0.0 Metagenome 3300027921 *Microbiome Finished Cave microbial communities from biofilms and mineral spring water, Bavaria, Germany Mineral spring water microbial communities from Sulzbrunn cave, Bavaria, Germany - Filter The Keck Facility at the Josephine Bay Paul Center 3300027921 Metagenome Analysis metaspades v. 3.11 released by JGI data releasing policy Yes Yes clemuenchen@gmail.com clemens karwautz No Environmental Aquatic Saline Non-marine Saline and Alkaline Athalassic mineral spring water 47.67 10.39 594839684 1592056 441 10 983 16 0.0 Metagenome 3300015296 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_12JUL2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015296 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 149490542 270134 11 42 11 51 SRX3923570 Unrestricted 10.08 Metagenome 3300007770 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate a Georgia Genomics Facility 3300007770 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.0 -64.66 436495429 524343 198 20 230 26 0.0 Metagenome 3300070452 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_043-M-20170629-COMP-DNA1 3300070452 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 4384647 14171 25 0 62 1 0.0 Metagenome 3300031087 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLF.R2 DOE Joint Genome Institute (JGI) 3300031087 Metagenome Analysis spades v. 3.12.0 Yes Yes icelab@berkeley.edu Steven Lindow No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 37.8864 -122.2981 762496494 1220048 458 39 630 49 SRX5656687 Unrestricted 48.9 Metagenome 3300048559 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Woodchip biofilm microbial communities from lab scale WBR in Cornell University, Ithaca, NY, USA - rep1_cs_p1_w5 DOE Joint Genome Institute (JGI) 3300048559 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 906747890 1796263 578 31 959 53 Unrestricted 8.58 Metagenome 3300009605 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 DOE Joint Genome Institute (JGI) 3300009605 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 38.38 4.65 483941514 1006293 132 2 226 4 SRX2753806 Unrestricted 0.0 Metagenome 3300006873 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T14 (3) BES, Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006873 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com; tianakorin@googlemail.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis; Tetyana Korin No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 33752351 60336 41 0 64 0 0.0 Metagenome 3300057181 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - LE-22 DOE Joint Genome Institute (JGI) 3300057181 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.827 -83.193 21976009 61378 69 28 128 41 Unrestricted 77.09 Metagenome 3300009973 *Microbiome Permanent Draft Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_222 metaG DOE Joint Genome Institute (JGI) 3300009973 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes esinger@lbl.gov; twoyke@lbl.gov Esther Singer; Tanja Woyke No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass associated 30.387 -97.7301 17225773 33540 14 74 23 106 SRX2524163 Unrestricted 0.0 Metagenome 3300002789 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G10K1-12 DOE Joint Genome Institute (JGI) 3300002789 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 40201 131 18 0 31 0 SRX1991309 Unrestricted 0.0 Metagenome 3300055275 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water microbial communities from Sandhills, Nebraska, United States - NSL_Smith_2020_MMG DOE Joint Genome Institute (JGI) 3300055275 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.78581 -102.52354 2512450803 3662937 757 56 957 77 Unrestricted 0.0 Metagenome 3300001484 *Microbiome Permanent Draft Sheep rumen microbial communities from New Zealand from high and low methane emitting sheep Sheep rumen microbial communities from New Zealand - Rank12_low DOE Joint Genome Institute (JGI) 3300001484 Metagenome Analysis Velvet released per Rekha No Yes janine.kamke@agresearch.co.nz, janine.kamke@uni-wuerzburg.de Janine Kamke No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen -40.352 175.608 456493960 956990 568 38 869 64 0.0 Metagenome 3300042745 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T3_30-Apr-14 NMDC pilot DOE Joint Genome Institute (JGI) 3300042745 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 169601095 360000 276 156 439 242 SRX2838893 0.0 Metagenome 3300020351 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000676 (ERX555955-ERR599089) CEA Genoscope 3300020351 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -9.067 -140.6346 375669480 924838 472 4 742 20 0.0 Metagenome 3300069614 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_001-M-20170705-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069614 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 60875857 176967 117 7 210 15 0.0 Metagenome 3300005878 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_104 DOE Joint Genome Institute (JGI) 3300005878 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 197711891 699576 378 2 693 8 SRX2564940, SRX2581049 Unrestricted 0.0 Metagenome 2046860002 *Microbiome Permanent Draft Drinking water microbial communities from Ohio, US, that has been chlorinated or chloraminated Drinking water microbial communities from Ohio, US, that has been chlorinated or chloraminated - sample 11519, Newbler assembly 454 Life Sciences 2046860002 Metagenome Analysis Newbler released per JGI data release policy No Yes matlib.robin@epamail.epa.gov Robin Matlib No Environmental Aquatic Drinking water Freshwater Unclassified Drinking water 39.8 -84.3 105733596 260473 99 0 237 0 0.0 Metagenome 3300020724 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 04OCT2008 hypolimnion DOE Joint Genome Institute (JGI) 3300020724 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 123385235 264891 113 7 183 9 Unrestricted 0.0 Metagenome 3300037497 *Microbiome Permanent Draft Sediment microbial communities from various lakes in Switzerland Sediment microbial communities from Lake Lucerne, Nidwalden, Switzerland - LL_0.25 DOE Joint Genome Institute (JGI) 3300037497 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mark.lever@usys.ethz.ch Mark Alexander Lever No Environmental Aquatic Lake Freshwater Sediment sediment 46.9968 8.347 640141561 1095634 288 1 462 3 SRX9148211 Unrestricted 14.21 Metagenome 3300056628 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.18W.7 SIP fraction DOE Joint Genome Institute (JGI) 3300056628 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 165833810 337976 78 35 162 48 Unrestricted 12.47 Metagenome 3300049187 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - G6_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049187 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 387758240 850262 516 9 984 12 Unrestricted 0.0 Metagenome 3300004174 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 8_HOW4 DOE Joint Genome Institute (JGI) 3300004174 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 91519315 249611 83 2 153 1 SRX2720109 Unrestricted 0.0 Metagenome 3300039952 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 089_R1_022417 University of Maryland 3300039952 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.70083333 27.10083333 18898590 34746 56 2 78 4 0.0 Metagenome 3300019734 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BRT_6-7_MG DOE Joint Genome Institute (JGI) 3300019734 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 127837612 315518 263 21 533 37 SRX3982617 Unrestricted 3.74 Metagenome 3300042896 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME24Feb2009D2-rr0574 DOE Joint Genome Institute (JGI) 3300042896 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 895788535 1479097 218 99 273 105 Unrestricted 20.7 Metagenome 3300049636 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_6_E DOE Joint Genome Institute (JGI) 3300049636 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 209416631 243080 123 1 166 1 Restricted 92.04 Metagenome 3300026008 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_202 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026008 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 66607566 177932 172 6 271 3 SRX2564569, SRX2581037 Unrestricted 0.0 Metagenome 3300049169 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S17_B_D89 hydrophilic DOE Joint Genome Institute (JGI) 3300049169 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 232028081 355855 173 0 222 0 Unrestricted 69.59 Metagenome 3300053157 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere DOE Joint Genome Institute (JGI) 3300053157 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121225 -123.270853 280048835 541406 151 91 209 105 Unrestricted 0.0 Metagenome 3300038700 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-06-2_at_5-6_cm Genome Quebec 3300038700 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89673 -73.73461 1052501277 2471634 952 13 1994 36 0.0 Metagenome 3300041732 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_290 MetaG AgResearch, New Zealand, Mosgeil 3300041732 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1546961282 3112324 338 25 1142 61 0.0 Metagenome 3300034978 *Microbiome Finished Coastal sediment microbial communities from Western Antarctica Coastal sediment microbial communities from Western Antarctica - 12_event21 Megahit 21 Michigan State University 3300034978 Metagenome Analysis Megahit v. 1.1 released by Deric Learman No Yes deric.learman@cmich.edu Deric Learman No Environmental Aquatic Coastal Marine Sediment marine sediment -71.4505 -102.1594 361104129 830905 200 48 481 60 0.0 Metagenome 3300045439 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-646 Genome Quebec 3300045439 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.714643 -123.613474 994998035 2179484 425 119 678 223 0.0 Metagenome 3300017633 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - LL13-03 University of Michigan 3300017633 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.41803 -85.44348 17488847 28630 17 1 19 2 0.0 Metagenome 3300047288 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Altamaha River, Georgia, USA - NASQAN2015_174 DOE Joint Genome Institute (JGI) 3300047288 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 392752539 892699 308 42 506 64 Unrestricted 28.98 Metagenome 3300018047 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10 DOE Joint Genome Institute (JGI) 3300018047 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 1413515648 2928903 818 62 1411 102 SRX3960036 Unrestricted 5.88 Metagenome 3300049500 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC31 DOE Joint Genome Institute (JGI) 3300049500 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 50884745 129712 150 2 316 3 Unrestricted 18.67 Metagenome 3300039358 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 195_M Beijing Genomics Institute (BGI) 3300039358 Metagenome Analysis Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 111144894 154681 77 0 158 0 ERX490992 0.0 Metagenome 3300004198 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 25_LOW6 DOE Joint Genome Institute (JGI) 3300004198 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 106695237 271802 57 0 112 0 SRX2720163 Unrestricted 0.0 Metagenome 3300014726 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00308 Weill Cornell Medical College 3300014726 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.99 21628934 34848 16 0 18 1 SRX822281 0.0 Metagenome 3300044624 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME13Jul2015-rr0991 DOE Joint Genome Institute (JGI) 3300044624 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 960475435 1501604 367 79 481 117 Unrestricted 17.51 Metagenome 3300042910 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-052-1 (PacBio) DOE Joint Genome Institute (JGI) 3300042910 Metagenome Analysis metaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.5705 -110.8052 183836767 221498 91 0 97 0 Unrestricted 0.0 Metagenome 3300032229 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains Ecozone, Canada - Lake 08-120 Genome Quebec 3300032229 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.796823 -72.522866 569078274 1096861 316 48 506 100 0.0 Metagenome 3300001971 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from the Sargasso Sea - GS000c J. Craig Venter Institute (JCVI) 3300001971 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Oceanic Marine Unclassified Marine 32.174835 -64.01017 234314346 409070 208 14 314 20 0.0 Metagenome 3300000480 *Microbiome Permanent Draft Bovine rumen microbial communities from Waikato, New Zealand Bovine rumen microbial communities from Waikato, New Zealand Macrogen 3300000480 Metagenome Analysis Unknown released per JGI data release policy No Yes christina.moon@agresearch.co.nz Christina Moon No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -37.76549 175.363764 2438571 5928 0 3 1 3 0.0 Metagenome 3300001736 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP-131 DOE Joint Genome Institute (JGI) 3300001736 Metagenome Analysis Yes Yes mbsulli@gmail.com, sacinas@icm.csic.es; mbsulli@gmail.com Matthew Sullivan, Silvia G. Acinas; Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 17.4274 -59.8286 77968528 189201 101 0 198 0 SRX4924344 Unrestricted 0.0 Metagenome 3300035449 *Microbiome Permanent Draft STAs constructed wetland biome Wetland sediment microbial communities from Everglades, Florida, USA - STA10-Sample01_1 Merge01 University of Florida 3300035449 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy No Yes ng.hanh24@gmail.com Hanh Nguyen No Environmental Aquatic Wetlands Freshwater Sediment sediment 26.38 -80.51 6.6-8.4 56522030 80331 53 4 92 4 0.0 Metagenome 3300005894 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_203 DOE Joint Genome Institute (JGI) 3300005894 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 307738052 1052103 459 17 814 29 SRX2564565, SRX2581062 Unrestricted 0.0 Metagenome 3300027966 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Nasutitermes corniger P5 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P5 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027966 Metagenome Analysis spades v. 3.11.1 Yes Yes brune@mpi-marburg.mpg.de Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 26.0625 -80.2332 844672840 1068166 57 6 106 6 SRX2553509 Unrestricted 0.0 Metagenome 3300031360 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - SW1603-40 DOE Joint Genome Institute (JGI) 3300031360 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.722 -70.891 502790349 1072974 405 1 675 4 SRX5359058 Unrestricted 9.59 Metagenome 3300025127 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025127 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 18.92 -108.7999 437910010 990732 13 0 8 0 SRX2557353 Unrestricted 0.0 Metagenome 3300002892 *Microbiome Permanent Draft Contaminated subsurface sediment microbial communities from Dusseldorf, Germany, analyzing toluene degradation Tol_9112115 3300002892 Metagenome Analysis released by JGI data releasing policy No Yes emnabouhajja@gmail.com Emna Bouhajja No Environmental Terrestrial Sediment Geologic Unclassified Contaminated subsurface sediment 51.21 6.46 50879 65 0 0 0 0 0.0 Metagenome 3300009632 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_4_40 DOE Joint Genome Institute (JGI) 3300009632 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 336453559 589300 169 1 280 2 SRX3002040 Unrestricted 0.0 Metagenome 3300022850 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 1-5 DOE Joint Genome Institute (JGI) 3300022850 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0474 141636966 337770 125 8 182 14 SRX4415362, SRX8128068 Unrestricted 0.0 Metagenome 3300060655 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_073-O-20210623-comp-1 DOE Joint Genome Institute (JGI) 3300060655 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 45.825842 -121.960125 1243731233 2155346 384 94 697 146 Unrestricted 15.69 Metagenome 3300012088 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ028 MetaG DOE Joint Genome Institute (JGI) 3300012088 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.8725 -74.5199 241431801 486963 235 27 391 67 SRX3539466 Unrestricted 0.0 Metagenome 3300005680 *Microbiome Permanent Draft Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia Enhanced biological phosphorus removal bioreactor viral communities from the University of Queensland, Australia - SBR4-V91412 Phage Sequencing University of Queensland 3300005680 Metagenome Analysis CLC 6.0 Released per Connor Skennerton (Sep 15, 2015) No Yes c.skennerton@gmail.com Connor Skennerton No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor lab-scale EBPR bioreactor -27.49999 153.012098 86653897 183913 29 7 82 9 0.0 Metagenome 3300024225 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU5 DOE Joint Genome Institute (JGI) 3300024225 Metagenome Analysis spades v. 3.11.1 Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Host-associated Plants Rhizosphere Roots Unclassified rhizosphere 49.0448 13.618 219660774 524334 157 27 261 45 SRX4456764 Unrestricted 8.34 Metagenome 3300027803 *Microbiome Permanent Draft Thawing permafrost microbial communities from the Arctic, studying carbon transformations Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712S3S (version 2) DOE Joint Genome Institute (JGI) 3300027803 Metagenome Analysis spades v. 3.11.1 Yes Yes rich.270@osu.edu Virginia Rich Yes 30013118 Environmental Terrestrial Wetlands Soil Permafrost Thawing permafrost 68.3533 19.0475 531389687 1972247 220 36 396 73 SRX2774892 Unrestricted 0.0 Metagenome 3300000162 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 hypolimnion v1 DOE Joint Genome Institute (JGI) 3300000162 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.0412 -89.6864 87219173 183752 70 4 138 6 Unrestricted 0.0 Metagenome 3300047483 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Jordan River, Golan Heights, Israel - seaofgalileej4_2019_sw_WHONDRS-S19S_0058 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047483 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 32.8993 35.6136 247792922 385637 182 12 305 19 Unrestricted 0.0 Metagenome 3300012556 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100394 University of Pennsylvania 3300012556 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 15665074 24831 9 3 15 4 SRX756263 0.0 Metagenome 3300017972 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG DOE Joint Genome Institute (JGI) 3300017972 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 4.0627 -73.195 2277205793 4739723 1445 44 2469 65 SRX3936919 Unrestricted 5.95 Metagenome 3300030516 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (v2) (version 3) DOE Joint Genome Institute (JGI) 3300030516 Metagenome Analysis spades v. 3.12.0 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.0936 -100.2988 594623726 1265171 830 90 1457 134 SRX2124704 Unrestricted 0.0 Metagenome 3300070573 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Treehaven, Wisconsin, USA - TREE_049-M-20200708-COMP-DNA1 Battelle Memorial Institute 3300070573 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 45.493852 -89.591026 4.81-5.18 49592000 149197 131 9 274 20 0.0 Metagenome 3300050335 *Microbiome Permanent Draft American moose and American beaver microbial community from Toronto, Canada American beaver droppings microbial community from Toronto, Canada - BD-PH University of Toronto 3300050335 Metagenome Analysis Custom JGI assembly. These are public NCBI metagenomes erroneously loaded as private. Galina Ovchinnikova Yes Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Host-associated Mammals Large intestine Digestive system Fecal American beaver droppings 43.66 -79.4 333706190 487602 285 0 372 0 SRX13466130 0.0 Metagenome 3300004353 *Microbiome Permanent Draft Enriched unplanted field soil microbial communities from Goettingen, Germany Enriched unplanted field soil microbial communities from Goettingen, Germany that are hydrolytic Goettingen Genomics Laboratory 3300004353 Metagenome Analysis meta-velvetgSL released per JGI data release policy No Yes g2l.info@gwdg.de, g2l.info@gwdg.de; g2l.info@uni-goettingen.de Anja Poehlein, G2L Team; Sonja Voget No Environmental Terrestrial Unclassified Soil Agricultural land Enriched unplanted field 130781374 160201 41 4 52 0 0.0 Metagenome 3300039193 *Microbiome Finished Marine algae associated bacterial community from Sydney, Australia Marine algae associated bacterial community from Sydney, Australia - Ulva australis_2R4 w/o D2 Ramaciotti Centre for Genomics 3300039193 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes j.nappi@unsw.edu.au Jadranka Nappi No Host-associated Algae Unclassified Unclassified Unclassified Marine -33.990304 151.231529 504673496 730575 78 11 169 15 0.0 Metagenome 3300026700 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN350 (SPAdes) DOE Joint Genome Institute (JGI) 3300026700 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 15993165 50641 56 8 116 12 SRX3311801 Unrestricted 0.0 Metagenome 3300034994 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Sediment microbial communities from East River floodplain, Colorado, United States - 25_s17 DOE Joint Genome Institute (JGI) 3300034994 Metagenome Analysis metaspades v. 3.13.0 Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Aquatic Sediment Floodplain Unclassified sediment 38.9229 -106.9499 704493498 1659895 580 9 1074 13 SRX7631468 Unrestricted 7.68 Metagenome 3300015689 *Microbiome Permanent Draft Microbial communities associated with sugarcane Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A02 Universidade Estadual de Campinas 3300015689 Metagenome Analysis Spades released by JGI data releasing policy No Yes scs.rafael@gmail.com Rafael Souza No Host-associated Plants Rhizosphere Roots Unclassified rizhosphere -22.8187222 -47.05896667 9113377 10960 6 0 9 0 0.0 Metagenome 3300024905 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 86_LOW11 (SPAdes) DOE Joint Genome Institute (JGI) 3300024905 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 33495364 54105 20 2 30 6 SRX2721148 Unrestricted 0.0 Metagenome 3300029170 *Microbiome Permanent Draft Infant fecal microbial communities from Pittsburgh, USA Infant fecal microbial communities from Pittsburgh, USA - NECEvent2014_7_3 Banfield Lab, University of California, Berkeley 3300029170 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant fecal 40.4308 -79.9598 30572314 43109 54 0 65 0 0.0 Metagenome 3300008980 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Final time point T65 (2) (BES) benzoate enrichments of Methanogenic microbial communities using Athabasca oil sands as inoculum DE NOVO (2) Shell Corporation 3300008980 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 56708224 194691 74 0 158 4 0.0 Metagenome 3300032735 *Microbiome Permanent Draft Understanding the reciprocal impacts of modified plant cell wall and associated microbiome Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R3 DOE Joint Genome Institute (JGI) 3300032735 Metagenome Analysis spades v. 3.13.0 Yes Yes kalluriudayc@ornl.gov Udaya C. Kalluri No Host-associated Plants Stem Phyllosphere Wood/Secondary xylem xylem 32.1348 -81.9657 512899347 531406 69 75 114 112 SRX6873090 Unrestricted 0.0 Metagenome 3300003638 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 m-RNA DAY 01 University of Sao Paulo, Virginia Bioinformatics Institute 3300003638 Metagenome Analysis SoapDeNovo released per JGI data release policy No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 21833328 53140 12 34 56 92 0.0 Metagenome 3300003373 *Microbiome Permanent Draft Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 DOE Joint Genome Institute (JGI) 3300003373 Metagenome Analysis revert back to private per Christa Yes Yes filipagodoyvitorino@gmail.com, NNIvanova@lbl.gov; filipagodoyvitorino@gmail.com; fgodoyvitorino@gmail.com Filipa Godoy Vitorino, Natalia Ivanova; Filipa Godoy-Vitorino; Filipa Godoy Vitorino No Host-associated Plants Rhizosphere Roots Unclassified Tabebuia heterophylla rhizosphere 18.402889 -66.050054 408810254 1021286 454 23 817 29 SRX2562478 Unrestricted 0.0 Metagenome 3300022215 *Microbiome Permanent Draft Anaerobic microbial community of wastewater bioreactor in Changsha, Hunan, China Activated sludge microbial communities from anaerobic bioreactor in Hunan University, Changsha, China - 7 Beijing Novogene Bioinformatics Technology Co., Ltd 3300022215 Metagenome Analysis IDBA v.1.1.1 released by JGI data releasing policy No Yes yuezheng@uw.edu Yue Zheng No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 28.2127 113.0106 558981118 1048965 465 2 771 5 0.0 Metagenome 3300050228 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Warrenville, Illinois, USA - 74_707_IL_DR_0cm_c2_T0_16O DOE Joint Genome Institute (JGI) 3300050228 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 41.84145 -88.2298 457841520 814013 171 3 327 11 Restricted 15.17 Metagenome 3300030107 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_072 - TARA_R100001082 CEA Genoscope 3300030107 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -8.7296 -17.9604 268518195 557167 3 1 6 5 0.0 Metagenome 3300000825 *Microbiome Permanent Draft Subaerial biofilm microbial communities from sulfidic caves, Italy, that are extremely acidic Subaerial biofilm microbial communities from sulfidic caves, Italy, that are extremely acidic - Acquasanta AS5 Pennsylvania State University 3300000825 Metagenome Analysis Public release - Daniel Jones (April 29, 2016) No Yes djones@psu.edu Daniel Jones No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Subaerial biofilm 42.755 13.411118 8590020 17561 3 0 4 0 0.0 Metagenome 3300005984 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus manae LIZARD ISLAND DOE Joint Genome Institute (JGI) 3300005984 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 728033284 1783119 10 15 15 19 SRX2712089 Unrestricted 0.0 Metagenome 3300024338 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_9 DOE Joint Genome Institute (JGI) 3300024338 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Strait Marine Unclassified seawater 49.2166667 -123.5333333 661974112 1593235 542 48 1055 60 SRX4480231 Unrestricted 9.94 Metagenome 3300002982 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Midwestern USA - DC3-135 DOE Joint Genome Institute (JGI) 3300002982 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 2061514 6900 14 4 12 9 SRX2770441 Unrestricted 0.0 Metagenome 3300040412 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_002-M-20140415-COMP-DNA1 Argonne National Laboratory 3300040412 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 4967479 14173 22 2 25 4 ERX2133933 0.0 Metagenome 3300007597 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1563A-02 DOE Joint Genome Institute (JGI) 3300007597 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2103 -123.7517 394004490 788098 308 15 532 29 SRX2753761 Unrestricted 0.0 Metagenome 3300034690 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Sediment microbial communities from East River floodplain, Colorado, United States - 60_j17 DOE Joint Genome Institute (JGI) 3300034690 Metagenome Analysis metaspades v. 3.13.0 Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Aquatic Sediment Floodplain Unclassified sediment 38.9229 -106.9499 496737936 1303032 461 22 854 38 SRX7630711 Unrestricted 6.61 Metagenome 3300029525 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P045V6 Beijing Genomics Institute (BGI) 3300029525 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 36215200 44502 42 0 51 0 0.0 Metagenome 3300045612 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Towuti Lake, South Sulawesi, Indonesia - Towuti_20m_2015 DOE Joint Genome Institute (JGI) 3300045612 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.7 121.4 419045553 851517 282 45 456 81 Unrestricted 22.97 Metagenome 3300010148 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG DOE Joint Genome Institute (JGI) 3300010148 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.198 -77.499 411414399 1018332 1 0 5 0 SRX3196700, SRX3196701 Unrestricted 0.0 Metagenome 3300041939 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Bulk soil microbial community from Lincoln, Canterbury, New Zealand - BS-UN_52 MetaG AgResearch, New Zealand, Mosgeil 3300041939 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Environmental Terrestrial Unclassified Soil Agricultural land Dairy farm pasture soil -43.648506 172.343549 1948543435 4464971 391 32 1206 61 0.0 Metagenome 3300008890 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T5 (2) BES, Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO Shell Corporation 3300008890 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl .ac.uk, ianhead@ncl .ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 98325671 341997 138 0 238 0 0.0 Metagenome 3300033130 *Microbiome Permanent Draft Mercury Periphyton Project Periphyton microbial communities from the St. Maurice River, Quebec, Canada - S2.E1 Genome Quebec 3300033130 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Periphyton Freshwater periphyton 47.893588 -73.756927 206395554 486519 278 134 585 226 0.0 Metagenome 3300042614 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Microcerotermes sp. from Ebogo II, Mbalmayo, Cameroon - Mcx344 Eurofins MWG Operon 3300042614 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 3.388333 11.470222 604257321 671438 85 4 100 12 0.0 Metagenome 3300044495 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_115 DOE Joint Genome Institute (JGI) 3300044495 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 756030241 1870495 734 12 1317 23 Unrestricted 7.63 Metagenome 3300044920 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_6_A DOE Joint Genome Institute (JGI) 3300044920 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 189619522 240925 97 1 127 2 Unrestricted 92.25 Metagenome 7000000134 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 370425937 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000134 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 9496909 23009 0 0 0 0 0.0 Metagenome 3300035188 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Sep2012-rr0179 DOE Joint Genome Institute (JGI) 3300035188 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1409135895 2785915 765 207 1184 309 SRX7710016 Unrestricted 10.96 Metagenome 3300046725 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 soil DOE Joint Genome Institute (JGI) 3300046725 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.588251 -123.194029 6.66 167987450 319369 183 15 330 19 Unrestricted 20.84 Metagenome 3300048912 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled DOE Joint Genome Institute (JGI) 3300048912 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Rhizoplane Roots Unclassified Rhizoplane soil 42.40581 -85.40228 2296510048 3797075 780 47 1166 79 Unrestricted 14.87 Metagenome 3300060899 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210607_11_21 DOE Joint Genome Institute (JGI) 3300060899 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 816005939 1251748 279 189 390 251 Unrestricted 26.26 Metagenome 3300007078 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila putrida male 4 gut Cornell University 3300007078 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy Yes Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila putrida male adult gut 43.025606 -77.572811 69066401 196804 57 9 90 10 0.0 Metagenome 7000000074 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 809635352 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000074 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 121878595 230667 0 0 0 0 0.0 Metagenome 3300023093 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L178-409R-2 DOE Joint Genome Institute (JGI) 3300023093 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 659713778 1350086 518 112 853 181 SRX4798200 Unrestricted 10.32 Metagenome 3300017752 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 23 SPOT_SRF_2011-06-22 DOE Joint Genome Institute (JGI) 3300017752 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 392977416 899064 37 13 73 29 SRX7207136, SRX7207135 Unrestricted 0.0 Metagenome 3300012531 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ864 (21.06) DOE Joint Genome Institute (JGI) 3300012531 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.0767 163.8954 778574499 1634979 497 11 702 19 SRX3372555 Unrestricted 0.0 Metagenome 3300025276 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025276 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -50.35 -39.82 322178519 652453 62 0 103 0 SRX2753838 Unrestricted 0.0 Metagenome 3300036879 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-2-M DOE Joint Genome Institute (JGI) 3300036879 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 545894394 918905 166 6 252 9 SRX8137262 Unrestricted 15.61 Metagenome 3300006304 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_1000m University of Hawaii 3300006304 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Aphotic zone Marine 22.75 -158.0 181010045 459729 412 12 542 23 0.0 Metagenome 3300042125 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_082716_2472 DOE Joint Genome Institute (JGI) 3300042125 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.9457 -103.6985 369946027 962248 478 35 819 72 Unrestricted 7.08 Metagenome 3300003341 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Midwestern USA - DC3-114 DOE Joint Genome Institute (JGI) 3300003341 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 6427481 20843 51 10 77 8 SRX2770433 Unrestricted 0.0 Metagenome 3300006243 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 370425937 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006243 Metagenome Analysis SPADES v3.6.1 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 52639523 97538 43 0 65 1 0.0 Metagenome 3300034050 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095 DOE Joint Genome Institute (JGI) 3300034050 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1321475253 2615721 506 183 746 312 SRX7622051 Unrestricted 14.1 Metagenome 3300012817 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched chicken feces microbial communities from UW Madison campus, WI, USA - DID2898_E24_Lignin MG DOE Joint Genome Institute (JGI) 3300012817 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie Yes 29545786 Host-associated Birds Large intestine Digestive system Fecal feces 43.073 -89.4011 80882717 107226 110 0 188 0 SRX3564731 Unrestricted 0.0 Metagenome 3300007138 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 764811490 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007138 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 70747507 98264 70 0 112 0 0.0 Metagenome 3300020144 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant dump, University of Wisconsin, Madison, United States - 1B110A DOE Joint Genome Institute (JGI) 3300020144 Metagenome Analysis spades v. 3.10.1 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0758 -89.4125 97429709 123082 57 6 74 5 SRX3988380 Unrestricted 36.54 Metagenome 3300023705 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen5, Rep 2 Spades (v2) (version 2) DOE Joint Genome Institute (JGI) 3300023705 Metagenome Analysis spades v. 3.11.1-check No Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4149 -119.841 206971864 292757 186 2 240 6 SRX4037782 Unrestricted 0.0 Metagenome 3300048860 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD15 DOE Joint Genome Institute (JGI) 3300048860 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.347657 -119.2808 117658104 157543 13 28 18 39 Unrestricted 198.13 Metagenome 3300070479 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_006-M-20190107-COMP-DNA1 Battelle Memorial Institute 3300070479 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 19.578312 -155.318129 4.27-5.23 2944686 9439 19 4 39 7 0.0 Metagenome 3300027799 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0_MG DOE Joint Genome Institute (JGI) 3300027799 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.7 121.4042 679069172 1605060 571 0 1002 2 SRX5244056 Unrestricted 8.04 Metagenome 2004247004 *Microbiome Permanent Draft Hypersaline mat microbial communities from Guerrero Negro, Baja California Sur, Mexico Hypersaline mat microbial communities from Guerrero Negro, Mexico - 4-5 mm depth into microbial mat DOE Joint Genome Institute (JGI) 2004247004 Metagenome Analysis No Yes nrpace@colorado.edu Pace, Norman Yes 18523433 Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Microbial mats Hypersaline mat 27.68908 -113.917 6-9 9803980 16053 6 0 3 0 0.0 Metagenome 3300033070 *Microbiome Finished Seoul Wastewater Treatment Plant Virome, South Korea Freshwater viral comunity from Han River, upstream of Seonam wastewater treatment plant effluent, Seoul, South Korea - HAN-up v.1 Macrogen 3300033070 Metagenome Analysis SPAdes v. 3.10.1 released by JGI data releasing policy No Yes chojc@inha.ac.kr Jang-Cheon Cho No Environmental Aquatic River Freshwater Unclassified freshwater 37.585516 126.822251 39688538 55936 0 0 0 0 0.0 Metagenome 3300070541 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from North Sterling, Colorado, USA - STER_027-M-20170605-COMP-DNA1 Battelle Memorial Institute 3300070541 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Agricultural land Soil Unclassified Terrestrial soil 40.480827 -103.018821 7.27-7.45 417317 1364 10 2 13 1 0.0 Metagenome 3300007545 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1547B-3 DOE Joint Genome Institute (JGI) 3300007545 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2314 -123.8828 379192566 720655 353 40 552 81 SRX2753627 Unrestricted 0.0 Metagenome 3300048572 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_118 DOE Joint Genome Institute (JGI) 3300048572 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 16432056 47767 261 11 527 11 Restricted 0.0 Metagenome 3300013206 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100617 University of Pennsylvania 3300013206 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 22097958 50999 23 0 32 2 SRX756477 0.0 Metagenome 3300001943 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Cape May, New Jersey, USA - GS010 J. Craig Venter Institute (JCVI) 3300001943 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine 38.94 -74.685 57052860 104685 54 1 124 0 0.0 Metagenome 3300044447 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 096-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044447 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9272 -106.9806 605186436 1456052 407 58 732 108 Unrestricted 8.61 Metagenome 3300056307 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_200715.NP1 DOE Joint Genome Institute (JGI) 3300056307 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 962762894 1979338 533 194 824 340 Restricted 14.14 Metagenome 3300047567 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Activated sludge microbial communities from digester in WWTP, Madison, Wisconsin, United States - Acid_Sludge_Seed_A (downsampled for mapping) DOE Joint Genome Institute (JGI) 3300047567 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35894622 Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.0738 -89.414 82887986 95900 61 0 61 0 SRX12687756, SRX15594531, SRX15594530 Unrestricted 0.0 Metagenome 3300035543 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B2.9_Sample2.Rodeo9.Well665 DOE Joint Genome Institute (JGI) 3300035543 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 89955684 158740 111 0 164 0 SRX8352749 Unrestricted 105.93 Metagenome 3300001063 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0556 DOE Joint Genome Institute (JGI) 3300001063 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -26.91 -21.43 31900329 79961 68 2 105 2 SRX1982930 Unrestricted 0.0 Metagenome 3300013926 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00930 Weill Cornell Medical College 3300013926 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.74 -73.94 19241384 32620 15 0 16 0 SRX822893 0.0 Metagenome 3300002821 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Syncrude tailings pond microbial communities from Alberta, Canada - Iso-alkanes.Hi.seq-Iso3T McGill University 3300002821 Metagenome Analysis SoapDenovo2 + gam-ngs 139801 No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Lab enrichment Anaerobic media Defined media Unclassified Hydrocarbon resource environments 57.02 -111.65 7.2 385499390 449524 70 1 102 1 0.0 Metagenome 3300012264 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - Sed-PBS metaG DOE Joint Genome Institute (JGI) 3300012264 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; wswingley@niu.edu Ramunas Stepanauskas; Wesley Swingley No Environmental Aquatic Creek Freshwater Sediment Freshwater sediment 41.6655 -87.5437 13-14 84582186 184395 195 3 304 8 SRX3296629 Unrestricted 0.0 Metagenome 3300001324 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A26-35cm)- 6 month illumina University of Tennessee 3300001324 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 20408415 91639 200 5 350 6 0.0 Metagenome 3300015262 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG DOE Joint Genome Institute (JGI) 3300015262 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.1591 -96.4086 800419738 1860298 827 85 1372 153 SRX3579864 Unrestricted 13.07 Metagenome 3300001751 *Microbiome Permanent Draft Marine sediment microbial communities from White Oak River estuary, North Carolina Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-30_32 DOE Joint Genome Institute (JGI) 3300001751 Metagenome Analysis Yes Yes acidophile@gmail.com Brett Baker Yes 26824177 Environmental Aquatic Intertidal zone Marine Estuary: Microbial mat Marine sediment 34.640199 -77.109447 558305947 1410986 499 12 1019 5 SRX2554360 Unrestricted 0.0 Metagenome 3300027398 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus makropetalos BAHAMAS.1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027398 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 515279968 512230 5 2 11 2 SRX3340579 Unrestricted 0.0 Metagenome 3300009026 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575 DOE Joint Genome Institute (JGI) 3300009026 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 446695419 943464 335 83 572 131 SRX2753579 Unrestricted 0.0 Metagenome 3300011527 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00858 Weill Cornell Medical College 3300011527 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.58 23256794 32727 14 0 25 0 SRX822824 0.0 Metagenome 3300070913 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Colorado, USA - CPER_002-M-20180702-COMP-DNA1 3300070913 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 55439932 152090 70 4 136 11 0.0 Metagenome 3300030731 *Microbiome Permanent Draft Wheat crown rot disease influences the structure and diversity of wheat-associated microbiome Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 University of Western Sydney 3300030731 Metagenome Analysis MEGAHIT v. 1.0 released by JGI data releasing policy No Yes h.liu2@westernsydney.edu.au hongwei liu No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soils -27.565194 151.864444 138917701 306642 199 20 369 33 0.0 Metagenome 3300017512 *Microbiome Permanent Draft Bras del Port Febrero 2015 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CCAB Febrary 2015 University of Valencia 3300017512 Metagenome Analysis idba.1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Non-marine hypersaline water 38.1922 -0.5918 45799695 140248 1 0 0 0 0.0 Metagenome 3300029030 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 367_M Beijing Genomics Institute (BGI) 3300029030 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 120591751 173384 120 1 214 3 ERX491110 0.0 Metagenome 3300040192 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_042-M-20160727-COMP-DNA1 Battelle Memorial Institute 3300040192 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 10389034 31160 94 1 162 7 0.0 Metagenome 3300043720 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - Rondonia_Forest_1_A10m DOE Joint Genome Institute (JGI) 3300043720 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.169 -62.782 782093199 2124880 550 8 1087 16 Unrestricted 8.25 Metagenome 3300045217 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_5_C DOE Joint Genome Institute (JGI) 3300045217 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 165236499 191447 95 1 107 2 Unrestricted 146.5 Metagenome 3300037630 *Microbiome Permanent Draft Soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA Soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA - S2.2016.0 DOE Joint Genome Institute (JGI) 3300037630 Metagenome Analysis metaspades v. 3.13.0 Yes Yes adina@iastate.edu Adina Howe No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.0127 -93.7445 1870923128 3173556 549 4 913 7 SRX9161548 Unrestricted 14.51 Metagenome 3300045864 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from the Norris Geyser Basin, Yellowstone National Park, WY, United States - MSUNE_N_05 University of Wisconsin, Madison 3300045864 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.7311 -110.710192 117671745 271224 70 15 138 22 0.0 Metagenome 3300038476 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 E2 1-5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300038476 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0466 524561942 1344632 560 27 1017 35 SRX8138421, SRX8138420 Unrestricted 0.0 Metagenome 3300038611 *Microbiome Permanent Draft Oil contaminated soil microbial communities from a military base in Taszar, Hungary Oil contaminated soil microbial communities from a military base in Taszar, Hungary - F4_2 University of Szeged 3300038611 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Unclassified Soil Oil-contaminated Oil contaminated soil 46.37386 17.90063 3085961 6692 6 0 15 0 0.0 Metagenome 3300002428 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP02-I1 3300002428 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300042862 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13May2003-ww0265 DOE Joint Genome Institute (JGI) 3300042862 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 578751262 848654 175 47 252 46 Unrestricted 20.98 Metagenome 3300027153 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepC_8h DOE Joint Genome Institute (JGI) 3300027153 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 165424404 322278 140 9 201 19 SRX5245186 Unrestricted 16.0 Metagenome 3300019361 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300019361 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 1199159186 2936095 1249 104 2294 217 SRX3899683, SRX3899682 Unrestricted 0.0 Metagenome 3300014827 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A3_80cm_18M University of Tennessee 3300014827 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 378497753 722543 129 2 203 5 SRX710629 0.0 Metagenome 3300001837 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM39, ROCA_DNA237_0.2um_Ob_C_3a 3300001837 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Lotic Freshwater Unclassified Marine plankton -1.919017 -55.525717 74190098 176915 25 5 81 5 0.0 Metagenome 3300001511 *Microbiome Permanent Draft Human axilla skin microbial communities from the University of Liverpool, UK Human axilla skin microbial communities from the University of Liverpool, UK - AX16 3300001511 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Host-associated Mammals: Human Skin Integumentary system Axilla/Armpit Human axilla skin 53.3484 -3.009 23248792 45730 44 3 82 14 0.0 Metagenome 3300025082 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025082 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -13.003 -80.809 210044235 449641 47 0 56 0 SRX2926136 Unrestricted 0.0 Metagenome 3300032783 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3 DOE Joint Genome Institute (JGI) 3300032783 Metagenome Analysis spades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified soil 26.5065 -80.2537 4170196248 8466338 1556 51 2694 105 SRX5666832 Unrestricted 8.02 Metagenome 3300039979 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_020-O-20170731-COMP-DNA1 Battelle Memorial Institute 3300039979 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 18499856 52772 59 14 110 23 0.0 Metagenome 3300022587 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 6 Selected contigs with viral hallmark genes Autonomous University of Barcelona 3300022587 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 1684016 2537 0 0 0 0 0.0 Metagenome 3300042797 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N3_20_30 NMDC pilot DOE Joint Genome Institute (JGI) 3300042797 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37379502 -119.2722385 88910625 225159 147 7 278 17 SRX2523280 0.0 Metagenome 3300003804 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29May09 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003804 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 34189624 86338 50 23 75 57 SRX2565211 Unrestricted 0.0 Metagenome 3300034518 *Microbiome Permanent Draft Eastern Tropical North Pacific Ocean Metagenomes Marine microbial communities from the Eastern Tropical North Pacific Ocean - E17_1_100 Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300034518 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy No Yes mbeman@ucmerced.edu Michael Beman No Environmental Aquatic Hypoxic zone Marine Unclassified Seawater 20.5 -106.5 201615006 254899 99 6 127 9 0.0 Metagenome 3300017959 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG DOE Joint Genome Institute (JGI) 3300017959 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 3.8381 -73.3194 2090717003 4594011 1757 28 3095 46 SRX3936922 Unrestricted 5.09 Metagenome 3300006841 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT234_2_0200m University of Hawaii 3300006841 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Aphotic zone Marine 22.75 -158.0 66016220 111171 144 1 186 8 0.0 Metagenome 3300054037 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_13_40 re-annotation DOE Joint Genome Institute (JGI) 3300054037 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 372044930 723584 155 4 255 4 SRX3003644 0.0 Metagenome 3300006167 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t1_691P_inflammed - viral_metagenome University of Texas Southwestern Medical Center 3300006167 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 68802780 111946 58 0 73 0 0.0 Metagenome 3300028135 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 7D DOE Joint Genome Institute (JGI) 3300028135 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 342610913 767859 303 18 420 67 SRX5171238 Unrestricted 23.15 Metagenome 3300029738 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37264 Beijing Genomics Institute (BGI) 3300029738 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 182474380 235113 170 0 234 0 0.0 Metagenome 3300029457 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001872-19 Beijing Genomics Institute (BGI) 3300029457 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 89925300 111473 73 0 133 0 0.0 Metagenome 3300007950 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human left retroauricular crease microbial communities from NIH, USA - visit 2, subject 764083206 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007950 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 73873309 82298 22 4 30 8 SRX024958, SRX098535 0.0 Metagenome 3300000643 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 05NOV2007 hypolimnion DOE Joint Genome Institute (JGI) 3300000643 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300028548 *Microbiome Finished Marine viral communities from South Scotia Ridge, Antarctic Ocean Marine viral communities from South Scotia Ridge, Antarctic Ocean - SST-1 Beijing Novogene Bioinformatics Technology Co., Ltd 3300028548 Metagenome Analysis idba v. 1.1.2 released by JGI data releasing policy Yes Yes foodyqw_12@163.com Yang Qingwei No Environmental Aquatic Oceanic Marine Unclassified marine -60.98 -48.78 280782203 449667 84 105 90 131 0.0 Metagenome 3300043028 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B6.1_Sample6.Rodeo1.Well1132 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043028 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 100792501 176883 109 0 196 0 SRX8355471 Unrestricted 116.77 Metagenome 3300027374 *Microbiome Permanent Draft Mouse cecum microbial communities from Vienna, Austria Mouse cecum microbial communities from Vienna, Austria - Glucosamine amended microcosms incubated with D2O (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027374 Metagenome Analysis spades v. 3.11.1 Yes Yes wagner@microbial-ecology.net; romans@mit.edu Michael Wagner; Roman Stocker No Host-associated Mammals Large intestine Digestive system Cecum Mouse cecum 48.2 16.37 316814384 489266 398 3 530 4 SRX2838879 Unrestricted 0.0 Metagenome 3300027992 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S125-311R-5 DOE Joint Genome Institute (JGI) 3300027992 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 126358567 364300 363 30 725 55 SRX5338618, SRX5338617 Unrestricted 0.0 Metagenome 3300037445 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - HN_080817 DOE Joint Genome Institute (JGI) 3300037445 Metagenome Analysis metaspades v. 3.13.0 Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.9002 -89.3556 363606299 951108 481 54 776 96 SRX9381644 Unrestricted 6.03 Metagenome 3300002903 *Microbiome Permanent Draft Soil microbial communities from Kansas (Konza Prairie Natural Area and Manhattan, Kansas, USA) Soil microbial communities from Manhattan, Kansas, USA - Sample 200um Nextera DOE Joint Genome Institute (JGI) 3300002903 Metagenome Analysis revert back to private per Christa Yes Yes elbrodie@lbl.gov, ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Unclassified Soil Unclassified Soil 39.214 -96.5852 81400547 272711 201 9 344 30 Unrestricted 0.0 Metagenome 3300046538 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere DOE Joint Genome Institute (JGI) 3300046538 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5882 -123.1939 577505713 902145 216 42 360 57 Unrestricted 24.63 Metagenome 3300047640 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BT26-06_D100 (version 2) DOE Joint Genome Institute (JGI) 3300047640 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3555 19.0492 173737051 248403 68 5 80 13 Restricted 0.0 Metagenome 3300040953 *Microbiome Permanent Draft Sediment microbial communities from Haima cold seep, South China Sea, China Sediment microbial communities from Haima cold seep, South China Sea, China - SY70.5.5_HM2M Magigene technology co., LTD. 3300040953 Metagenome Analysis IDBA v. 1.1.3 released by JGI data releasing policy No Yes sulei@tongji.edu.cn Lei Su No Environmental Aquatic Cold seeps Marine Sediment Sediment 16.729163 110.473065 .08 to .1 582324452 688654 173 3 222 3 0.0 Metagenome 3300026476 *Microbiome Permanent Draft Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 PR6 DOE Joint Genome Institute (JGI) 3300026476 Metagenome Analysis spades v. 3.11.1 Yes Yes ccraft@indiana.edu Chris Craft No Environmental Aquatic Wetlands Freshwater Sediment sediment 31.3377 -81.4644 168647790 451646 420 5 701 10 SRX4796517 Unrestricted 6.43 Metagenome 3300005443 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Singapore and Univ of Illinois at Urbana, that are terephthalate-degrading Wastewater bioreactor microbial communities from Singapore -TA reactor DNA contigs from 4 sample DOE Joint Genome Institute (JGI) 3300005443 Metagenome Analysis PGA No Yes sgtringe@lbl.gov Susannah Tringe Yes 20686509 Engineered Bioremediation Wastewater Terephthalate Bioreactor Wastewater bioreactor 1.332 103.756 59601001 95700 44 1 75 0 0.0 Metagenome 3300009513 *Microbiome Permanent Draft Microbial Role in Biogeochemical Cycling in a Beach Aquifer System Microbial community of beach aquifer porewater from Cape Shores, Lewes, Delaware, USA - F-1Y University of Delaware 3300009513 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes fielde14@ecu.edu Erin Field No Environmental Aquatic Unclassified Unclassified Unclassified beach aquifer porewater 38.7855 -75.1045 7.05 1027258273 2394354 1444 17 2313 39 0.0 Metagenome 3300000196 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 2000m DOE Joint Genome Institute (JGI) 3300000196 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 49.283333 -134.666667 48511828 117853 43 5 77 14 Unrestricted 0.0 Metagenome 3300020813 *Microbiome Permanent Draft Metagenomes from anaerobic digester of solid waste Anaerobic digester digestate microbial community, University of Toronto, Ontario, Canada - DG078 megahit University of Toronto 3300020813 Metagenome Analysis Megahit v1.1.1 Yes Yes elizabeth.edwards@utoronto.ca; camillaln@gmail.com Elizabeth A. Edwards; Camilla Nesb? No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic digester digestate 43.5479 -79.6609 729045788 1147183 504 2 754 6 0.0 Metagenome 3300002223 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_1.2 DOE Joint Genome Institute (JGI) 3300002223 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.534762 -107.782602 750827937 1816632 1017 35 1833 65 SRX1991815 Unrestricted 0.0 Metagenome 3300031865 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MSe3 DOE Joint Genome Institute (JGI) 3300031865 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 327077093 692937 215 0 325 0 SRX6411434 Unrestricted 172.68 Metagenome 3300022569 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 17 Selected contigs with viral hallmark genes Autonomous University of Barcelona 3300022569 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 1098202 1714 0 0 0 0 0.0 Metagenome 3300006189 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_750_plan - 1398105538144 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300006189 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 536957139 1047741 280 152 424 167 SRX2867350, SRX2867351 Unrestricted 0.0 Metagenome 3300040741 *Microbiome Permanent Draft Lab enriched deep subsurface rock microbial communities from Deccan Traps, India Lab enriched deep subsurface rock microbial communities from Deccan Traps, India - A1 CeGaT 3300040741 Metagenome Analysis MEGAHIT v. 1.2.9 released by JGI data releasing policy No Yes himaash2007@gmail.com HIMADRI BOSE No Environmental Terrestrial Rock Deep subsurface Unclassified deep subsurface rock 22.318 87.3115 7 1590 9595909 10142 5 0 8 0 0.0 Metagenome 3300037506 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from California, United States - Upper Travertine Spring (UTS_S3) DOE Joint Genome Institute (JGI) 3300037506 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Warm (34-42C) Thermal springs Unclassified Desert spring 36.4428 -116.8278 7.4 1976086207 2809447 675 8 1109 11 SRX9167740 Unrestricted 15.46 Metagenome 3300049022 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - A26_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049022 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 167817665 348286 295 14 515 22 Unrestricted 0.0 Metagenome 3300017685 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_07NOV2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017685 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 214910545 411759 155 115 247 163 SRX3927724 Unrestricted 8.21 Metagenome 3300022355 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1BM2 JM98 AGRF 3300022355 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 40774334 74780 39 3 60 3 0.0 Metagenome 3300011363 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - seawater enrichment SCG56 University of British Columbia 3300011363 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 1978126 4029 2 0 2 0 SRX143165 0.0 Metagenome 3300028879 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3 DOE Joint Genome Institute (JGI) 3300028879 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 1152880890 2533553 260 24 429 46 SRX5355872 Unrestricted 0.0 Metagenome 3300069570 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_002-M-20170619-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069570 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 83044822 242793 138 11 270 11 0.0 Metagenome 3300013133 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sediment microbial communities from Lake Kivu, Rwanda - Sediment s1_kivu2a2 DOE Joint Genome Institute (JGI) 3300013133 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.05 29.2062 1969966527 4123805 1646 13 2844 25 SRX3571219 Unrestricted 10.82 Metagenome 3300047402 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Amazon River, Macapa, Brazil - ROCA142 DOE Joint Genome Institute (JGI) 3300047402 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater -0.0838 -51.0514 154911730 368754 218 14 374 19 Unrestricted 17.44 Metagenome 2065487006 *Microbiome Permanent Draft Human fecal microbial communities from Baylor College of Medicine, Texas, USA, mock community Human fecal microbial communities from Baylor College of Medicine, Texas, USA, mock community - Mock Staggered Illumina Newbler Baylor College of Medicine 2065487006 Metagenome Analysis released per JGI data release policy No Yes xqin@bcm.tmc.edu Xiang Qin No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 29.7 -95.38 30590800 65531 40 0 94 0 0.0 Metagenome 3300049651 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F3_A_0_drought DOE Joint Genome Institute (JGI) 3300049651 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 99106714 244484 260 14 522 23 Unrestricted 11.9 Metagenome 3300027882 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027882 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 1737317648 3874346 588 17 1051 28 SRX2933125 Unrestricted 0.0 Metagenome 3300014146 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, USA - P5_16mM MetaG DOE Joint Genome Institute (JGI) 3300014146 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 88400610 96670 9 11 8 29 SRX3780033 Unrestricted 100.04 Metagenome 3300057045 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M1L_59_61 DOE Joint Genome Institute (JGI) 3300057045 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0036317 -81.5659748 1409328804 2277848 657 1 1136 1 Unrestricted 12.48 Metagenome 3300045533 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Iowa River, Iowa, USA - NASQAN2011_256 DOE Joint Genome Institute (JGI) 3300045533 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 41.178 -91.182 516497790 1130167 414 178 695 273 Unrestricted 0.0 Metagenome 3300004213 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG19_WC_8/21/14_NA DOE Joint Genome Institute (JGI) 3300004213 Metagenome Analysis MEGAHIT v. 0.2.0 revert back to private per Christa Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 1726806364 4228813 867 262 1418 641 SRX3348993 Unrestricted 0.0 Metagenome 3300037117 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPON2-1-X1 DOE Joint Genome Institute (JGI) 3300037117 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3578 19.0528 859101675 1594259 271 1 479 5 SRX9097223 Unrestricted 12.71 Metagenome 3300021140 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion v4 DOE Joint Genome Institute (JGI) 3300021140 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 289020201 603968 252 53 437 86 Unrestricted 0.0 Metagenome 3300029339 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 015_6_2_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029339 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 249548581 331262 230 1 311 0 0.0 Metagenome 3300047323 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere DOE Joint Genome Institute (JGI) 3300047323 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.588 -123.193 624911415 970640 216 66 360 81 Unrestricted 19.91 Metagenome 7000000098 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 158924089 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000098 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 67149158 96262 0 0 0 0 0.0 Metagenome 3300065527 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 802 in Cardston County, Alberta, Canada - S00JY_0056 Microbiome Insights 3300065527 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.264899 -113.060598 8016197 12593 18 0 39 0 0.0 Metagenome 3300020336 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289008-ERR315860) CEA Genoscope 3300020336 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 42.1659 17.7285 312263547 746191 216 13 418 28 0.0 Metagenome 3300009061 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_D2_MG DOE Joint Genome Institute (JGI) 3300009061 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe No Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4961 -122.1331 1054419782 1904511 989 12 1650 21 SRX3203252 Unrestricted 0.0 Metagenome 7000000577 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 158499257 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000577 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 28171349 61277 0 0 0 0 0.0 Metagenome 3300010329 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015 DOE Joint Genome Institute (JGI) 3300010329 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 877930835 1994570 529 21 1019 46 SRX2526328 Unrestricted 0.0 Metagenome 3300031676 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - CBN3_20m DOE Joint Genome Institute (JGI) 3300031676 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified Marine 80.9595 -132.1842 510441456 1053559 316 197 571 313 SRX5797856 Unrestricted 20.43 Metagenome 3300039218 *Microbiome Permanent Draft Cryoconite microbiome from cyroconite holes in Resolute Bay, NU, Canada Cryoconite microbial community from Resolute Bay, Canada - FullCryo FullCryo_trimmed McGill University 3300039218 Metagenome Analysis canu v. 1.9 released by JGI data releasing policy No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Aquatic Sea ice Marine Cryoconite Cryoconite 74.44707 -95.0348 1068547768 1688502 1624 581 2068 682 0.0 Metagenome 3300014693 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00241 Weill Cornell Medical College 3300014693 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.79 -73.97 39328648 75189 29 0 42 0 SRX822220 0.0 Metagenome 3300007654 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765094712 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007654 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 147882798 213313 123 3 141 4 0.0 Metagenome 3300035557 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_1_12_6 mgh University of Alberta 3300035557 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 74523637 98096 37 0 58 0 0.0 Metagenome 3300053723 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 endosphere DOE Joint Genome Institute (JGI) 3300053723 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121006 -123.270477 455906927 559440 81 124 117 134 Unrestricted 0.0 Metagenome 3300030006 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67 (version 2) DOE Joint Genome Institute (JGI) 3300030006 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9888 -108.3994 2432431604 5282060 1230 11 2039 34 SRX5340870, SRX5340869 Unrestricted 0.0 Metagenome 3300038518 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark - 1492-PRJ1066-RL-Sewage-55_S5_L001 Technical University of Denmark 3300038518 Metagenome Analysis Yes Yes No Engineered Wastewater Unclassified Sewage Unclassified Sewage 55.694986 12.615026 8484250 18667 31 0 41 0 ERX1584022 0.0 Metagenome 3300001957 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Wolf Island, Equador - GS035 J. Craig Venter Institute (JCVI) 3300001957 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine 1.3891667 -91.81695 88794277 150749 63 0 93 1 0.0 Metagenome 3300044453 *Microbiome Permanent Draft Simulated microbial communities of Trichodesmium and heterotrophic bacteria from Gulf of Aqaba, Eilat, Israel Simulated microbial communities of Trichodesmium and heterotrophic bacteria from Gulf of Aqaba, Eilat, Israel - Tfinal+54FeOx-2 DOE Joint Genome Institute (JGI) 3300044453 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes yeala.shaked@mail.huji.ac.il Yeala Shaked No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified simulated 29.501 34.917 400050064 485231 160 15 207 15 Unrestricted 221.6 Metagenome 3300001665 *Microbiome Permanent Draft Marine microbial communities from the Santa Barbara Basin, California, USA barSA 3300001665 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes dsjones@umn.edu, daniel.s.jones@nmt.edu Daniel Jones No Environmental Aquatic Cold seeps Marine Sediment Marine 13.2648 -59.4253 7818637 18241 2195 95 5193 160 0.0 Metagenome 3300027415 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert microbial communities from Antarctic Dry Valleys - UQ313 (SPAdes) DOE Joint Genome Institute (JGI) 3300027415 Metagenome Analysis spades v. 3.11.1 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert -78.0544 164.0209 20219283 21720 13 1 14 2 SRX3329645 Unrestricted 0.0 Metagenome 3300069607 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from LBJ National Grassland , Southern Plains, TX, USA - CLBJ_033-O-20160815-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069607 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 33.40123 -97.57 4469256 14960 42 4 82 6 0.0 Metagenome 3300069488 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_004-M-20160720-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069488 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 75621927 230262 159 9 314 12 0.0 Metagenome 3300057029 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M1P_9_10 DOE Joint Genome Institute (JGI) 3300057029 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0045281 -81.5645485 1948547259 2896329 794 3 1319 1 Unrestricted 14.37 Metagenome 3300038565 *Microbiome Permanent Draft Marine microbial communities from North Atlantic, Canada Marine microbial communities from North Atlantic, Canada - H11GW National Research Council, Canada Plant Biotechnology Institute 3300038565 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 43.858 -60.157 27011352 44539 19 0 33 0 0.0 Metagenome 3300043294 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P6_D8 (version 2) DOE Joint Genome Institute (JGI) 3300043294 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 560399304 769689 159 0 220 2 Unrestricted 0.0 Metagenome 3300027468 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DN (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027468 Metagenome Analysis spades v. 3.11.1 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 158935407 415956 107 9 208 13 Unrestricted 0.0 Metagenome 3300001618 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF030 DOE Joint Genome Institute (JGI) 3300001618 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.209488 1434058 4031 17 2 38 8 SRX2014349 Unrestricted 0.0 Metagenome 3300043473 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 317-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043473 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9094 -107.0285 581396901 1556979 444 18 850 26 Unrestricted 6.86 Metagenome 3300038359 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI150_2019_feb_120m DOE Joint Genome Institute (JGI) 3300038359 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 260882285 551330 194 18 323 41 SRX9402600 Unrestricted 12.96 Metagenome 2170459001 *Microbiome Permanent Draft Polar desert microbial communities from McMurdo Dry Valleys, Antarctica soil microbial communities from McMurdo Dry Valleys (Wright Valley), Antarctica University of New Mexico 2170459001 Metagenome Analysis Newbler default released per JGI data release policy No Yes cvesbach@unm.edu Cristina Takacs-Vesbach No Environmental Terrestrial Unclassified Soil Permafrost Polar desert 77.4475 162.676389 9.48 6261012 12860 12 0 24 0 0.0 Metagenome 3300013982 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01082 Weill Cornell Medical College 3300013982 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.97 9185268 14441 5 0 7 0 SRX823037 0.0 Metagenome 3300041055 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - T3D7 IDBA-UD 100x Baseclear 3300041055 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 157786101 231844 155 11 249 15 0.0 Metagenome 3300027609 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027609 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 357552021 797662 220 53 369 81 SRX3312438 Unrestricted 0.0 Metagenome 3300006257 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 764224817 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006257 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 101552093 131879 69 0 90 0 0.0 Metagenome 7000000600 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764447348 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000600 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 111446287 189966 0 0 0 0 0.0 Metagenome 3300049010 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - A20_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049010 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 34117539 84727 91 11 178 19 Unrestricted 0.0 Metagenome 3300032139 *Microbiome Permanent Draft Rhizosphere microbial communities from salt marsh grasses in Alabama, United States Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB DOE Joint Genome Institute (JGI) 3300032139 Metagenome Analysis spades v. 3.12.0 Yes Yes omason@fsu.edu Olivia Mason No Host-associated Plants Rhizosphere Roots Unclassified rhizosphere 30.2619 -88.2383 583212426 1383955 562 19 929 31 SRX5821837 Unrestricted 9.25 Metagenome 3300000279 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM219 Beijing Genomics Institute (BGI), Macrogen 3300000279 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 90409329 148971 230 1 366 0 0.0 Metagenome 3300025237 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_38 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025237 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -61.27 -43.92 103978491 229912 72 0 91 0 SRX4924297 Unrestricted 0.0 Metagenome 3300040380 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 069B_R1 University of Maryland 3300040380 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.52686 19.01319 5849472 7802 24 1 51 1 0.0 Metagenome 3300010270 *Microbiome Permanent Draft Animal gut microbial communities from fecal samples from Wisconsin, USA Capybara group fecal microbial communities from Wisconsin, USA - P827 metagenome DOE Joint Genome Institute (JGI) 3300010270 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes apneumann2@wisc.edu Anthony Neumann No Host-associated Mammals Large intestine Digestive system Fecal Capybara group fecal 43.07 -89.4 290838148 400061 605 0 896 0 SRX2505948 Unrestricted 0.0 Metagenome 7000000442 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 765094712 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000442 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 102358025 162503 0 0 0 0 0.0 Metagenome 3300026050 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqA_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026050 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.209766 -122.033424 48306687 139054 141 0 259 1 SRX7182424 Unrestricted 0.0 Metagenome 3300001876 *Microbiome Permanent Draft Desert and grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils - Sample 2 3300001876 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Terrestrial Unclassified Soil Grasslands Desert and grassland soil 23.850674 69.734802 0 0 0 0 0 0 0.0 Metagenome 3300037429 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - HLP_080817 DOE Joint Genome Institute (JGI) 3300037429 Metagenome Analysis metaspades v. 3.13.0 Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.896 -89.3636 356831586 911248 334 21 674 27 SRX9381727 Unrestricted 6.57 Metagenome 3300027147 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepC_8h DOE Joint Genome Institute (JGI) 3300027147 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 163166801 306570 126 10 169 13 SRX5245225 Unrestricted 19.56 Metagenome 3300031110 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLW.R2 DOE Joint Genome Institute (JGI) 3300031110 Metagenome Analysis spades v. 3.12.0 Yes Yes icelab@berkeley.edu Steven Lindow No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 37.8864 -122.2981 835863546 1400068 546 30 688 42 SRX5656686 Unrestricted 52.78 Metagenome 3300037854 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - Pt-14 DOE Joint Genome Institute (JGI) 3300037854 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 150686688 194862 70 8 74 8 SRX9140384 Unrestricted 111.1 Metagenome 3300006092 *Microbiome Permanent Draft Activated sludge microbial communities from wastewater treatment plant in Ulu Pandan, Singapore Activated sludge microbial communities from wastewater treatment plant in Ulu Pandan, Singapore Nanyang Technological University 3300006092 Metagenome Analysis Newbler released per JGI data release policy No Yes chuanhao@ntu.edu.sg Chuan Hao Tan No Engineered Wastewater Unclassified Activated Sludge Unclassified Wastewater Treatment Plant 1.3315 103.7543 956657417 1103118 101 11 140 10 0.0 Metagenome 3300027861 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MG DOE Joint Genome Institute (JGI) 3300027861 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Inlet Marine Unclassified seawater 48.58 -123.5 1345873769 3341633 1180 57 2112 83 SRX5243948 Unrestricted 8.72 Metagenome 3300051650 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - DMB5_1SRT_A (version 2) DOE Joint Genome Institute (JGI) 3300051650 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35894622 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.414 34447390 37243 73 4 78 4 SRX12687771, SRX12687772 Restricted 0.0 Metagenome 3300038758 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - TUL2 Michigan State University 3300038758 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 26.653333 -121.296667 30493637 84828 1 0 2 0 0.0 Metagenome 3300003088 *Microbiome Permanent Draft Acid mine drainage microbial communities from Carnoules, Gard, France Acid mine drainage microbial communities from Carnoules, Gard, France, unbinned CEA Genoscope 3300003088 Metagenome Analysis Made public because these are downloaded from Genbank No Yes ipagani@lbl.gov Pelletier,E., Ionna Pagani No Environmental Aquatic Groundwater Freshwater Contaminated Acid mine drainage 43.303 6.188 3308498 3727 0 0 0 0 0.0 Metagenome 3300023242 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1576 DOE Joint Genome Institute (JGI) 3300023242 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 121628756 272007 57 3 85 2 SRX4397712 Unrestricted 18.83 Metagenome 3300039155 *Microbiome Permanent Draft Organic and conventional farm associated microbial communities from Canada and USA Wastewater microbial communities from conventional feedlot in Alberta, Canada - WW124 Colorado State University 3300039155 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 50.34 -113.77 242113110 465781 294 0 501 0 0.0 Metagenome 3300025026 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-24 (SPAdes) DOE Joint Genome Institute (JGI) 3300025026 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 49.5668 -138.6659 60153555 82200 4 1 4 1 Unrestricted 0.0 Metagenome 7000000224 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763840445 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000224 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 127512101 222125 0 0 0 0 0.0 Metagenome 3300038437 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18A_2b_2_3 mgh University of Alberta 3300038437 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 49616883 65995 30 5 39 6 0.0 Metagenome 3300040231 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Atlantic Neotropical, PR, USA - GUAN_042-M-20161004-COMP-DNA1 Battelle Memorial Institute 3300040231 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 17.96955 -66.8687 7642079 23036 38 2 64 5 0.0 Metagenome 3300008213 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius longissimus B BELIZE.1 DOE Joint Genome Institute (JGI) 3300008213 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 22186138 44496 38 1 37 5 SRX2711353 Unrestricted 0.0 Metagenome 3300021579 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 2-17 MG DOE Joint Genome Institute (JGI) 3300021579 Metagenome Analysis spades v. 3.11.1-check Yes Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9363 -83.5573 156306085 417901 465 47 697 79 SRX4035269 Unrestricted 11.16 Metagenome 3300050138 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim3 50-54 DOE Joint Genome Institute (JGI) 3300050138 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.352963 19.04747 637007999 967160 167 1 318 1 Restricted 12.79 Metagenome 3300042283 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA MBR feed microbial communities from membrane bioreactor in Denver, Colorado, USA - FD_D291 DOE Joint Genome Institute (JGI) 3300042283 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Wastewater Mine water Industrial wastewater Produced water MBR feed 39.7823 -104.9101 357167167 558950 352 0 462 0 Unrestricted 38.9 Metagenome 3300009082 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015 DOE Joint Genome Institute (JGI) 3300009082 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wilkins.231@osu.edu, mike.wilkins@colostate.edu Michael Wilkins Yes 30086797 Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0991 -99.1044 1463114317 2955145 1154 18 2239 25 SRX2753781 Unrestricted 0.0 Metagenome 3300029248 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011688-36 Beijing Genomics Institute (BGI) 3300029248 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 185588051 264262 163 2 265 2 0.0 Metagenome 3300070356 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Alaska, USA - DEJU_002-M-20180619-COMP-DNA1 3300070356 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 22093591 67476 77 15 148 31 0.0 Metagenome 3300012638 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100430 University of Pennsylvania 3300012638 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 26463113 55688 11 0 23 0 SRX756568 0.0 Metagenome 3300021441 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 DOE Joint Genome Institute (JGI) 3300021441 Metagenome Analysis spades v. 3.11.1-check Yes Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Host-associated Plants Rhizosphere Roots Unclassified rhizosphere -19.2822 -43.5936 675991073 1760586 545 51 987 89 SRX4020302 Unrestricted 8.18 Metagenome 3300040564 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 067_R1_022417 University of Maryland 3300040564 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.53923 19.01723 2389304 7135 21 1 41 1 0.0 Metagenome 3300050545 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf microbial communities from Olympic Peninsula, Washington, USA - D0_SEK1_1 DOE Joint Genome Institute (JGI) 3300050545 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Alder tree leaf 48.165 -124.244 167857910 240458 22 15 33 16 Unrestricted 65.33 Metagenome 3300000312 *Microbiome Draft Wetland microbial communities from Twitchell Island in the Sacramento Delta Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site B2 Bulk DOE Joint Genome Institute (JGI) 3300000312 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes stringe@lbl.gov Susannah Tringe Yes 25991679 Environmental Aquatic Wetlands Marine Sediment Wetland 38.10726 -121.648538 -1.6 61310069 187974 304 14 576 18 Unrestricted 0.0 Metagenome 3300070648 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_004-O-20170726-COMP-DNA1 3300070648 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 153370984 421729 140 12 298 16 0.0 Metagenome 3300043552 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield ecozone, Canada - Lake 06-312 Genome Quebec 3300043552 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.147688 -91.647757 1107446240 2812576 588 127 997 237 0.0 Metagenome 3300055530 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.19C.13 SIP fraction DOE Joint Genome Institute (JGI) 3300055530 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 193283546 382835 85 53 143 73 Unrestricted 10.48 Metagenome 3300003780 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius imperfectus BELIZE.1 DOE Joint Genome Institute (JGI) 3300003780 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 184595402 474731 49 1 61 3 SRX3340563 Unrestricted 0.0 Metagenome 3300025199 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP1648 (SPAdes) DOE Joint Genome Institute (JGI) 3300025199 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -5.74 -170.77 69660325 131948 69 17 119 24 SRX1982439 Unrestricted 0.0 Metagenome 3300005457 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG DOE Joint Genome Institute (JGI) 3300005457 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 4411483055 11826325 3179 189 5386 370 SRX2740161 Unrestricted 0.0 Metagenome 3300026758 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06K4-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026758 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 22752531 73211 77 1 160 4 SRX2576205 Unrestricted 0.0 Metagenome 3300040316 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_048-M-20170710-COMP-DNA1 Battelle Memorial Institute 3300040316 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 5197733 14936 11 0 24 0 0.0 Metagenome 3300008418 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 246515023 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008418 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 58351496 66409 68 0 96 0 0.0 Metagenome 3300040947 *Microbiome Permanent Draft Marine microbial communities from the Puerto Rico Trench, Atlantic Ocean Marine microbial communities from the Puerto Rico Trench, Atlantic Ocean - 8263m Michigan State University 3300040947 Metagenome Analysis metaSPAdes v. 3.0 released by JGI data releasing policy No Yes alm067@ucsd.edu Alvaro M. Plominsky No Environmental Aquatic Hadalpelagic Marine Unclassified Marine 19.698367 -66.351433 584931329 1189729 149 33 357 63 0.0 Metagenome 3300056592 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf microbial communities from Olympic Peninsula, Washington, USA - D0_RHK1_2 DOE Joint Genome Institute (JGI) 3300056592 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Alder tree leaf 48.154 -124.211 362731930 409078 52 36 94 57 Unrestricted 0.0 Metagenome 3300013789 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS842 IDBA reassembly Marine Biological Laboratory 3300013789 Metagenome Analysis reassembly with IDBA-UD released by JGI data releasing policy No Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow marine hydrothermal vent 18.375164 -81.797067 6.26 38714045 69301 27 2 40 4 0.0 Metagenome 3300008465 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Sea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC5B Shell Corporation 3300008465 Metagenome Analysis idba_ud Released on PI's request No Yes ebalsop@lbl.gov, nicolas.tsesmetzis@shell.com Eric Alsop, Nicolas Tsesmetzis No Environmental Aquatic Cold seeps Marine Sediment Sediment 27.4 -93.2 225578278 875359 284 10 595 4 0.0 Metagenome 3300012154 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ037 MetaG DOE Joint Genome Institute (JGI) 3300012154 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.746 -74.7609 202129019 402183 184 33 277 69 SRX3539469 Unrestricted 0.0 Metagenome 3300032297 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains Ecozone, Canada - Lake 08-188 Genome Quebec 3300032297 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.628909 -80.047251 702899792 1382696 332 99 530 185 0.0 Metagenome 3300005738 *Microbiome Permanent Draft Microbial degradation of oil Seawater microbial communities from Vineyard Sound, MA, USA - sterilised with crude oil T0 University of Wisconsin, Madison 3300005738 Metagenome Analysis velvet released per JGI data release policy No Yes rsimiste@haverford.edu, rlsimister@gmail.com rachel simister, Rachel Simister No Environmental Aquatic Unclassified Marine Unclassified marine 41.4417 -70.7744 36330694 67032 82 0 107 0 0.0 Metagenome 3300000045 *Microbiome Draft Arabidopsis rhizosphere microbial communities from the University of North Carolina Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis Col-0 old rhizosphere DOE Joint Genome Institute (JGI) 3300000045 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes sgtringe@lbl.gov, sgtringe@lbl.gov; dangl@email.unc.edu Susannah Tringe, Susannah Tringe; Jeff Dangl Yes 22859206 Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9 -79.05 13358733 33375 167 11 301 13 Unrestricted 0.0 Metagenome 3300055454 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.17C.10 SIP fraction DOE Joint Genome Institute (JGI) 3300055454 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 249666344 486920 109 22 151 37 Unrestricted 29.97 Metagenome 3300013767 *Microbiome Permanent Draft Regolith bacterial community from Guaba Ridge, Luquillo Mountains, Puerto Rico Regolith bacterial community from Guaba Ridge, Luquillo Mountain, Puerto Rico enriched on diorite - DIO7 University of Wisconsin, Madison 3300013767 Metagenome Analysis MetaSPAdes v3.10 released by JGI data releasing policy Yes Yes snapieralski@wisc.edu Stephanie Napieralski No Engineered Lab enrichment Unclassified Unclassified Unclassified Regolith 18.28 -65.79 516099551 803062 150 1 191 3 0.0 Metagenome 3300048447 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_160511.NP1 DOE Joint Genome Institute (JGI) 3300048447 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 749581016 1622733 471 42 723 54 Unrestricted 14.15 Metagenome 3300000918 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and E1 (2) DOE Joint Genome Institute (JGI) 3300000918 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 44883636 80556 38 0 56 0 SRX3311655 Unrestricted 0.0 Metagenome 3300016670 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water reservoir in Singapore - WB_Site 7, Aug Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016670 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Lake Freshwater Unclassified freshwater 1.35 103.87 84158891 107977 11 0 14 0 0.0 Metagenome 3300042991 *Microbiome Permanent Draft Sediment microbial communities from sulfidic stream in Frasassi Caves, Marche, Italy Sediment microbial communities from sulfidic stream in Frasassi Caves, Marche, Italy - RS19_109 DOE Joint Genome Institute (JGI) 3300042991 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes heidiaronson@berkeley.edu Heidi Aronson No Environmental Aquatic Groundwater Deep subsurface Cave stream sediment Sediment 43.4012 12.9656 3253688533 4947066 1184 8 1998 15 Unrestricted 15.1 Metagenome 3300000965 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP1241 DOE Joint Genome Institute (JGI) 3300000965 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -31.16 110.18 10845980 28825 25 10 40 14 SRX1982567 Unrestricted 0.0 Metagenome 3300019874 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - L1a1 DOE Joint Genome Institute (JGI) 3300019874 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.8927 -106.9112 205852273 471742 240 17 499 24 SRX3958713, SRX3958712 Unrestricted 0.0 Metagenome 3300015281 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_NF_12JUL2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015281 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 126119847 231836 12 35 15 58 SRX3923577 Unrestricted 10.27 Metagenome 3300042607 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Nasutitermes c.f. ephratae from Petit Saut, French Guiana, France - Nx346 Eurofins MWG Operon 3300042607 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 5.071383 -53.039049 440505277 472341 78 7 90 8 0.0 Metagenome 3300049319 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA37 DOE Joint Genome Institute (JGI) 3300049319 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 202623330 591524 297 4 556 7 Unrestricted 6.4 Metagenome 3300029443 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 053_3_10_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029443 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 265856161 357629 259 0 339 0 0.0 Metagenome 3300022808 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R14 Version 2 University of New South Wales 3300022808 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 119205413 199129 72 2 94 5 0.0 Metagenome 3300046096 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_79 DOE Joint Genome Institute (JGI) 3300046096 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9223 -106.9493 551042814 1433403 1124 296 2151 482 Unrestricted 0.0 Metagenome 3300054076 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_4_40 re-annotation DOE Joint Genome Institute (JGI) 3300054076 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 296658355 573463 137 2 233 2 SRX3002040 0.0 Metagenome 3300025513 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKD (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025513 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 358461005 559232 132 14 166 20 SRX2746610 Unrestricted 0.0 Metagenome 3300013388 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100176 University of Pennsylvania 3300013388 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 916880 2583 3 4 10 3 SRX756357 0.0 Metagenome 3300014095 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00640 Weill Cornell Medical College 3300014095 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.8 -73.95 62654679 97108 31 0 40 0 SRX822607 0.0 Metagenome 3300069283 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Yellowstone NP, Wyoming, USA - YELL_002-M-20210706-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069283 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 44.932467 -110.634896 1084617294 2762045 1086 57 2118 110 0.0 Metagenome 7000000536 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit number 3 of subject 763536994 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000536 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 21440176 39161 0 0 0 0 0.0 Metagenome 3300043712 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - Rondonia_Forest_3_A1m DOE Joint Genome Institute (JGI) 3300043712 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Unclassified Soil -10.142 -62.882 337390440 978216 279 5 537 5 Unrestricted 7.97 Metagenome 3300071015 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_010-M-20210526-COMP-DNA1 3300071015 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 160346 557 3 0 8 0 0.0 Metagenome 3300027263 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1569A-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027263 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2861 -123.7318 171532742 366490 168 49 264 73 SRX2753763 Unrestricted 17.91 Metagenome 3300007529 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 550534656 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007529 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 5632913 17131 25 0 52 0 0.0 Metagenome 3300057196 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Michigan, United States - E2018-0032 DOE Joint Genome Institute (JGI) 3300057196 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.95805556 -83.52222222 202311438 459431 221 86 441 143 Unrestricted 19.13 Metagenome 3300005339 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG DOE Joint Genome Institute (JGI) 3300005339 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 4475676851 12080704 3675 263 6161 526 SRX2740132 Unrestricted 0.0 Metagenome 3300014703 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS65_0 University of Hohenheim 3300014703 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 60902494 90115 32 0 76 0 0.0 Metagenome 3300031637 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - CBN3_surface DOE Joint Genome Institute (JGI) 3300031637 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified Marine 80.9595 -132.1842 666487583 1397671 344 209 598 387 SRX5797857 Unrestricted 18.46 Metagenome 3300026518 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in the Atlantic and Pacific Ocean Hydrothermal vent microbial communities from Lau Basin, Pacific Ocean - 131-447 DOE Joint Genome Institute (JGI) 3300026518 Metagenome Analysis spades v. 3.11.1 Yes Yes pgirguis@oeb.harvard.edu Peter Girguis No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent -22.1802 -176.6008 408311357 685938 335 27 495 41 SRX4801601 Unrestricted 33.68 Metagenome 3300070764 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_002-M-20190610-COMP-DNA1 3300070764 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 18710 60 2 0 2 0 0.0 Metagenome 3300008537 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765337473 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008537 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 152506795 199964 114 0 151 0 0.0 Metagenome 3300017520 *Microbiome Permanent Draft Fecal microbial communities from free-living howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from free-living howler monkeys from Sao Paulo Zoo, Brazil - Ind. 1-2, S2 Center for Advanced Technologies in Genomics, Sao Paulo University 3300017520 Metagenome Analysis SPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 106134553 189579 180 2 206 0 0.0 Metagenome 3300020377 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556007-ERR599065) CEA Genoscope 3300020377 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 2.0663 -84.5304 684959725 1729256 436 37 727 63 0.0 Metagenome 3300044258 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_256 DOE Joint Genome Institute (JGI) 3300044258 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 424213255 1120425 430 17 714 24 Unrestricted 6.97 Metagenome 3300015330 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12JUL2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015330 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 199903829 340619 16 119 12 194 SRX3923443 Unrestricted 7.86 Metagenome 3300002185 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Cubitermes ugandensis P1 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P1 DOE Joint Genome Institute (JGI) 3300002185 Metagenome Analysis SOAPdenovo v. Version 1.05: testing... 2010 Yes Yes brune@mpi-marburg.mpg.de Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 0.2917 34.856 2060091016 7307449 3924 151 6921 242 SRX2553502, SRX2553503 Unrestricted 0.0 Metagenome 3300026359 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A DOE Joint Genome Institute (JGI) 3300026359 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 165851122 405891 156 22 301 29 SRX4802472 Unrestricted 10.46 Metagenome 3300071068 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_045-M-20200721-COMP-DNA1 3300071068 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 2712705 9194 38 5 78 9 0.0 Metagenome 3300027826 *Microbiome Permanent Draft Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027826 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade Yes 30397342 Environmental Terrestrial Unclassified Soil Unclassified Surface soil 40.7999 -76.3402 1218063078 2489210 633 52 1065 104 SRX2837983 Unrestricted 0.0 Metagenome 3300002073 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 DOE Joint Genome Institute (JGI) 3300002073 Metagenome Analysis Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 175696539 536918 617 37 1071 57 SRX2554599 Unrestricted 0.0 Metagenome 3300049718 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 E1 20-24 DOE Joint Genome Institute (JGI) 3300049718 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3544 19.0458 628821169 917135 264 7 406 8 Restricted 12.86 Metagenome 3300048115 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_121010.NP2 DOE Joint Genome Institute (JGI) 3300048115 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 613290215 1454562 509 183 797 305 Unrestricted 9.93 Metagenome 3300025941 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025941 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 3815172934 8541956 1363 81 2511 153 SRX3203373 Unrestricted 0.0 Metagenome 3300059744 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1554B-3 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059744 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2871 -123.9424 103701869 232539 148 36 232 56 SRX2753733 Unrestricted 0.0 Metagenome 3300042881 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06Aug2013-rr0339 DOE Joint Genome Institute (JGI) 3300042881 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1375752933 2109144 478 28 641 42 Unrestricted 16.82 Metagenome 3300007830 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 823052294 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007830 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 1428983 4192 7 3 12 4 SRX024079 0.0 Metagenome 3300011493 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00396 Weill Cornell Medical College 3300011493 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.67 -73.99 17454662 28139 12 0 18 0 SRX822367 0.0 Metagenome 3300022401 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 3, Penicillin and Streptomycin (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022401 Metagenome Analysis spades v. 3.11.1-check Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4148 -119.8405 464678223 621550 389 45 642 59 SRX3963292 Unrestricted 68.12 Metagenome 3300049272 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA23 DOE Joint Genome Institute (JGI) 3300049272 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 291388840 722501 405 5 735 14 Unrestricted 7.84 Metagenome 3300006733 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from Cariaco Basin, Caribbean Sea - 26B_WHOI_OMZ_CsCl DOE Joint Genome Institute (JGI) 3300006733 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 10.847 -65.114 170224566 314099 151 0 275 0 SRX2929475 Unrestricted 0.0 Metagenome 3300066293 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_016-O-20160718-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066293 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 106514480 302234 154 15 285 19 0.0 Metagenome 3300053171 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S17_A_D89 hydrophilic DOE Joint Genome Institute (JGI) 3300053171 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 258922036 403344 206 0 247 0 Restricted 0.0 Metagenome 3300028641 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Glu DOE Joint Genome Institute (JGI) 3300028641 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 307695643 519411 242 0 383 0 SRX5281750 Unrestricted 23.33 Metagenome 3300017839 *Microbiome Permanent Draft Wastewater microbial communities from petroleum well in Natal, Brazil Wastewater microbial communities from petroleum well in Natal, Brazil - Consorcio_B Federal University of Rio Grande do Norte 3300017839 Metagenome Analysis Geneious released by JGI data releasing policy No Yes marzinha1@gmail.com Marbella Fonseca No Engineered Wastewater Petrochemical Industrial wastewater Unclassified wastewater -5.795 -35.20944 448715656 1670254 4635 0 8110 9 0.0 Metagenome 3300025061 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from Cariaco Basin, Caribbean Sea - 23_WHOI_OMZ (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025061 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 10.847 -65.114 116762941 171077 73 0 68 0 SRX2752504 Unrestricted 0.0 Metagenome 3300049765 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_B_4_drought DOE Joint Genome Institute (JGI) 3300049765 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 286585303 664085 477 19 884 36 Unrestricted 10.93 Metagenome 3300032052 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19 DOE Joint Genome Institute (JGI) 3300032052 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1064860243 2581417 381 7 636 7 SRX5817501 Unrestricted 11.01 Metagenome 3300027700 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic Ocean affecting the dissolved organic carbon pool Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - NADW_A/KNORR_S2/LV (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027700 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -37.9728 -44.9905 510576842 1139179 460 52 736 74 SRX2566788 Unrestricted 0.0 Metagenome 7000000709 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764892411 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000709 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 72755108 135169 0 0 0 0 0.0 Metagenome 3300046483 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvCe-C(2) 10-14 DOE Joint Genome Institute (JGI) 3300046483 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0434 120859903 191036 59 0 103 0 Restricted 12.16 Metagenome 3300070762 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_042-M-20210524-COMP-DNA1 3300070762 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 46548 166 5 0 4 0 0.0 Metagenome 3300070340 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_001-M-20180625-COMP-DNA1 3300070340 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 29955608 90229 67 15 148 27 0.0 Metagenome 3300013549 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100338 University of Pennsylvania 3300013549 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 592489 1648 8 1 17 10 SRX756319 0.0 Metagenome 3300013616 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100418 University of Pennsylvania 3300013616 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4456067 11901 7 1 16 1 SRX756580 0.0 Metagenome 3300014260 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D1_rd DOE Joint Genome Institute (JGI) 3300014260 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.197227 -122.010124 274310937 660864 379 6 712 11 SRX7181187 Unrestricted 0.0 Metagenome 3300053748 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHL_01 DOE Joint Genome Institute (JGI) 3300053748 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.40849 -82.168434 881705110 1161495 23 45 59 27 Restricted 47.95 Metagenome 3300026803 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A1-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026803 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 28610106 87810 125 2 235 4 SRX1991147 Unrestricted 0.0 Metagenome 3300043714 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - Rondonia_Forest_3_C100m DOE Joint Genome Institute (JGI) 3300043714 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.142 -62.882 475450640 1323723 334 6 688 6 Unrestricted 8.06 Metagenome 3300013471 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - sediment SCG77 University of British Columbia 3300013471 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Sediment Marine 195696 580 0 0 0 0 SRX143186 0.0 Metagenome 3300029675 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37200R1 Beijing Genomics Institute (BGI) 3300029675 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 151303034 191499 125 0 168 0 0.0 Metagenome 3300061638 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Lower Teakettle, Sierra National Forest, California, USA - TEAK_004-O-20210726-comp-1 DOE Joint Genome Institute (JGI) 3300061638 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 37.001687 -119.036304 2084465830 3473849 589 151 858 197 Unrestricted 13.5 Metagenome 3300007271 *Microbiome Permanent Draft Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia - TJ15 time point Australian Centre for Ecogenomics 3300007271 Metagenome Analysis CLC released per JGI data release policy No Yes crinke@lbl.gov Christian Rinke No Environmental Aquatic Coastal Marine Unclassified marine surface water -34.1192 151.2267 96820719 125854 36 6 43 2 0.0 Metagenome 3300070275 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Alaska, USA - DEJU_009-M-20180619-COMP-DNA1 3300070275 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 18779644 57337 75 10 140 19 0.0 Metagenome 3300045149 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_1_F DOE Joint Genome Institute (JGI) 3300045149 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 157922191 182504 100 2 101 1 Unrestricted 101.53 Metagenome 3300048036 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_120711.NP1 DOE Joint Genome Institute (JGI) 3300048036 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 713959686 1506286 491 154 740 281 Unrestricted 13.92 Metagenome 3300037075 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C7-9C DOE Joint Genome Institute (JGI) 3300037075 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 387525981 1129031 607 13 1051 19 SRX8815227 Unrestricted 5.43 Metagenome 3300003540 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS896_ElGuapo_DNA 3300003540 Metagenome Analysis CLC genomics workbench 7.0 released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.926575 -129.979479 578244857 1335173 245 38 615 92 0.0 Metagenome 3300004269 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - site 2 B6 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300004269 Metagenome Analysis spades v. 3.1.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes rmkelly@ncsu.edu Robert Kelly No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6102 -110.4387 10392474 11524 23 0 20 3 SRX2554348, SRX2554349, SRX2554347, SRX2554354, SRX2554350 Unrestricted 0.0 Metagenome 3300020601 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011506CT metaG (spades assembly) DOE Joint Genome Institute (JGI) 3300020601 Metagenome Analysis spades v. 3.10.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 754004924 1294271 352 48 657 72 SRX3919532 Unrestricted 42.94 Metagenome 3300012330 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100528 University of Pennsylvania 3300012330 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 24622340 40631 37 0 67 0 SRX756226 0.0 Metagenome 3300005185 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgHPB DOE Joint Genome Institute (JGI) 3300005185 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 190066392 678825 352 11 766 17 SRX2521132 Unrestricted 0.0 Metagenome 3300051646 *Microbiome Permanent Draft Sediment microbial communities from various environments and locations in Europe Sediment microbial communities from Baltic Sea, Sweden - H3D5S (IMG v5.1) (version 2) DOE Joint Genome Institute (JGI) 3300051646 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes o.eyice@qmul.ac.uk Ozge Eyice No Environmental Aquatic Sediment Marine Unclassified Sediment 58.8444 17.795 591885262 1356267 519 8 884 11 Unrestricted 0.0 Metagenome 3300011718 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00785 Weill Cornell Medical College 3300011718 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.8 -73.95 27068147 50758 30 0 31 0 SRX822751 0.0 Metagenome 3300005073 *Microbiome Permanent Draft Cellulose enrichment metagenome from thermal spring in Terrace, British Columbia, Canada Cellulose enrichment metagenome from thermal spring in Terrace, British Columbia, Canada Leibniz Institute 3300005073 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes dunfield.bio@gmail.com Dunfield Laboratory No Environmental Aquatic Hot (42-90C) Thermal springs Alkaline sediment 54.358506 -128.541159 396769370 1028546 553 1 1058 20 0.0 Metagenome 3300045881 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from the Mud Volcano Area, Yellowstone National Park, WY, United States - MSUNE_GOPA_01 University of Wisconsin, Madison 3300045881 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.610039 -110.43943 53076588 81448 17 6 35 1 0.0 Metagenome 3300049274 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA26 DOE Joint Genome Institute (JGI) 3300049274 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 220443641 547541 330 3 577 5 Unrestricted 7.3 Metagenome 3300004287 *Microbiome Permanent Draft Naso tonganus gut microbial communities from Lizard Island, Australia, for analysis of Epulopiscium sp. type B symbiont Naso tonganus gut microbial communities from Lizard Island, Australia, for analysis of Epulopiscium sp. type B symbiont Cornell University 3300004287 Metagenome Analysis 454 Newbler released per JGI data release policy No Yes drs357@cornell.edu David Sannino No Host-associated Fish Intestine Digestive system Unclassified intestinal symbiont -18.5678 -148.5553 3627526 3069 2 1 1 0 0.0 Metagenome 3300025401 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29Jun09 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025401 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 147291752 295051 99 42 116 64 SRX2565203 Unrestricted 0.0 Metagenome 3300059742 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1554B-02 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059742 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2871 -123.9424 173469287 362332 125 4 213 9 SRX2753731 Unrestricted 0.0 Metagenome 3300059360 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.16C.8 SIP fraction DOE Joint Genome Institute (JGI) 3300059360 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 1610067 4143 20 4 44 7 Unrestricted 13.38 Metagenome 3300037183 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 C-1-S DOE Joint Genome Institute (JGI) 3300037183 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3544 19.048 480687374 1149023 398 28 654 49 SRX8161242 Unrestricted 6.75 Metagenome 3300050021 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 P3 40-44 DOE Joint Genome Institute (JGI) 3300050021 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3535 19.0473 608864302 802007 163 3 244 5 Restricted 23.83 Metagenome 3300026046 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026046 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.05246563 -121.76914021 67041486 168118 154 2 277 4 SRX7182416 Unrestricted 0.0 Metagenome 3300071136 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_042-M-20190716-COMP-DNA1 3300071136 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 11005480 35530 57 5 126 6 0.0 Metagenome 3300032054 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23 DOE Joint Genome Institute (JGI) 3300032054 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1131200185 2746911 421 8 694 15 SRX5820397 Unrestricted 10.91 Metagenome 3300064951 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 728 in Hairy hill, Alberta, Canada - S00JY_0671 Microbiome Insights 3300064951 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.4621528 -112.0407692 363774085 509558 90 1 118 2 0.0 Metagenome 3300022061 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022061 Metagenome Analysis spades v. 3.11.1-check Yes Yes chenf@umces.edu; bcampb7@clemson.edu Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.12 -75.25 113852039 312425 37 3 59 8 SRX3786004, SRX3786005, SRX2838768 Unrestricted 0.0 Metagenome 3300017496 *Microbiome Permanent Draft Bras del Port Noviembre 2014 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CR30 Nov 2014 University of Valencia 3300017496 Metagenome Analysis idba.1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Non-marine hypersaline water 38.1922 -0.5918 33852536 113008 7 1 5 0 0.0 Metagenome 3300028497 *Microbiome Permanent Draft Glacial microbial communities from Tirich Mir Glacier, Hindukush range Chitral, Pakistan Glacial sediment microbial communities from Tirich Mir Glacier sediment, Hindukush range Chitral, Pakistan - T05 T05 University of Bristol 3300028497 Metagenome Analysis SPAdes v. 3.11.1 released by JGI data releasing policy No Yes mr14311@my.bristol.ac.uk Muhammad Rafiq No Environmental Aquatic Ice Freshwater Glacier glacial sediment 36.255 71.8408 7 58862606 68629 13 4 13 4 0.0 Metagenome 3300011765 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00716 Weill Cornell Medical College 3300011765 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.74 -73.99 35824513 55690 29 0 35 0 SRX822683 0.0 Metagenome 3300022753 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet fungal communities from Santa Barbara, California, USA - pellet 3 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022753 Metagenome Analysis spades v. 3.11.1-check Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4204 -119.6671 2813553781 5040172 3817 22 5198 0 SRX3964279 Unrestricted 15.82 Metagenome 3300008159 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160178356 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008159 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 166373086 266608 174 0 268 0 0.0 Metagenome 3300026966 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 M2 (2) (SPAdes) DOE Joint Genome Institute (JGI) 3300026966 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 114589098 175538 79 0 98 0 SRX3311545 Unrestricted 0.0 Metagenome 3300035052 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B4.9_Sample4.Rodeo9.Well667 DOE Joint Genome Institute (JGI) 3300035052 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 177248887 287739 185 0 268 0 SRX8354055 Unrestricted 42.63 Metagenome 3300068014 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210612_16_01 DOE Joint Genome Institute (JGI) 3300068014 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 477161613 726555 256 134 354 186 Unrestricted 0.0 Metagenome 3300029866 *Microbiome Permanent Draft Crustal fluid microbial communities from North Pond, Mid-Atlantic Ridge, Atlantic Ocean 2014 cruise Crustal fluid microbial communities from North Pond, Mid-Atlantic Ridge, Atlantic Ocean - 1382A 2014 Marine Biological Laboratory 3300029866 Metagenome Analysis IDBA-UD v. 1.1.2 released by JGI data releasing policy No Yes lmseyler@gmail.com Lauren Seyler No Environmental Aquatic Oceanic Marine Unclassified Oceanic crustal fluids 22.75 -46.083 44396349 57370 34 3 49 7 0.0 Metagenome 3300040407 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_017-M-20160728-COMP-DNA1 Battelle Memorial Institute 3300040407 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 5091140 16356 71 2 144 2 0.0 Metagenome 3300040688 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Abby Road, Pacific Northwest, WA, USA - ABBY_070-M-20170606-COMP-DNA1 Battelle Memorial Institute 3300040688 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.76243 -122.33033 1103906 3652 8 4 13 1 0.0 Metagenome 3300002457 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Oil sands microbial communities from Horse River, Alberta, Canada - outcrops collected from inside the river McGill University 3300002457 Metagenome Analysis released per JGI data release policy No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Environmental Terrestrial Sand Soil Oil-contaminated Hydrocarbon resource environments 56.70268 -111.394976 0 0 0 0 0 0 0.0 Metagenome 3300010233 *Microbiome Permanent Draft Filterable freshwater microbial communities from Conwy River, North Wales, UK Filterable freshwater microbial communities from Conwy River, North Wales, UK. Fraction, filtered through 0.2 um filter. After WGA. Fidelity Systems Inc 3300010233 Metagenome Analysis Phred/Phrap/Consed v. 23.0 released per JGI data release policy Yes Yes stepan.toshchakov@gmail.com Stepan Toshchakov No Environmental Aquatic River Freshwater Unclassified freshwater 53.2 -3.82 227308057 623535 9 0 16 0 0.0 Metagenome 3300043554 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield ecozone, Canada - Lake 06-308 Genome Quebec 3300043554 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.74382 -93.799896 1055013440 2448385 495 116 842 260 0.0 Metagenome 3300008005 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-09 DOE Joint Genome Institute (JGI) 3300008005 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 954077812 1669877 824 40 1400 54 SRX3198099 Unrestricted 0.0 Metagenome 3300014858 *Microbiome Permanent Draft Human bile duct microbial communities from gallstone patients in Hangzhou, China Human bile duct microbial communities from gallstone patients in Hangzhou, China - A4_bile Beijing Institution of Radiation Medicine 3300014858 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Biliary tract Digestive system Bile ducts: Bile Human bile duct 3831112 6738 0 5 0 7 SRX957031, SRX957018 0.0 Metagenome 3300012152 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT590_2 DOE Joint Genome Institute (JGI) 3300012152 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9227 -106.9509 164021898 399440 340 12 741 14 SRX3368951 Unrestricted 0.0 Metagenome 3300006078 *Microbiome Permanent Draft Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea - fluid C Max Planck Institute for Plant Breeding Research 3300006078 Metagenome Analysis idba_ud v 1.1.1 released per JGI data release policy Yes Yes dmeier@mpi-bremen.de, dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Hydrothermal vents Marine Diffuse flow diffuse hydrothermal fluids -3.728333 151.672394 352320966 649200 116 21 192 33 0.0 Metagenome 7000000308 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 160158126 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000308 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 127086137 182186 0 0 0 0 0.0 Metagenome 3300030112 *Microbiome Permanent Draft Deep subsurface porewater microbial communities from Mt Terri URL, St-Ursanne, Switzerland Deep subsurface porewater microbial communities from Mt Terri URL, St-Ursanne, Switzerland - BRH_41 Swiss Federal Institute of Technology in Lausanne 3300030112 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Groundwater Freshwater Unclassified Deep subsurface porewater 47.37892341 7.16496703 231113875 302907 120 1 151 0 0.0 Metagenome 3300044574 *Microbiome Permanent Draft Metagenomic Analysis of Freshwater Hydrothermal Vents Freshwater hydrothermal vent microbial communities from Crater Lake, Oregon, USA - S13 Western Washington University 3300044574 Metagenome Analysis MegaHIT v. 1.2.9 released by Laura A Murray No Yes lmurray0918@gmail.com Laura Murray No Environmental Aquatic Lake Freshwater Microbial mats Freshwater hydrothermal vent mat 42.9415 -122.0988 189974085 428285 220 18 402 40 0.0 Metagenome 3300013878 *Microbiome Permanent Draft Microbial communities from methanogenic microcosms from oil petroleum samples laboratory microbial enrichments from Reconcavo Basin petroleum reservoir, Newcastle Upon Tyne, UK - 60 gl 50C 60gl 50C UNIVERSIDADE DE SAO PAULO 3300013878 Metagenome Analysis METASPADES k=79 No Yes inatalia.sierra@gmail.com Isabel Natalia Sierra Garcia No Engineered Lab enrichment Anaerobic media Defined media Unclassified Laboratory microcosms 54.97825278 -1.61778056 25495099 43892 39 0 49 0 0.0 Metagenome 3300002738 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA DOE Joint Genome Institute (JGI) 3300002738 Metagenome Analysis Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Unclassified Roots Unclassified Arabidopsis root 35.9082 -79.0499 96859694 153684 83 0 127 0 SRX1991094 Unrestricted 0.0 Metagenome 3300048907 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 DOE Joint Genome Institute (JGI) 3300048907 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Rhizoplane Roots Unclassified Rhizoplane soil 42.40581 -85.40228 2180031116 3513950 728 50 1085 81 Unrestricted 13.62 Metagenome 3300011558 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metalplastic -P01501 Weill Cornell Medical College 3300011558 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface City subway metal/plastic 40.75 -73.99 23302016 35160 24 0 22 0 SRX823377 0.0 Metagenome 3300048691 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_83 DOE Joint Genome Institute (JGI) 3300048691 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9703 -106.997 379201189 889367 1577 45 2986 68 Restricted 0.0 Metagenome 3300029223 *Microbiome Permanent Draft North Pond 2017 Crustal fluid microbial communities from North Pond, Mid-Atlantic Ridge, Atlantic Ocean - Bottom Marine Biological Laboratory 3300029223 Metagenome Analysis IDBA-UD v. 1.1.2 released by JGI data releasing policy No Yes lmseyler@gmail.com Lauren Seyler No Environmental Aquatic Oceanic Marine Benthic Oceanic crustal fluids 22.75 -46.083 16378530 19054 17 0 19 1 0.0 Metagenome 3300001310 *Microbiome Permanent Draft Bioengineered switchgrass rhizosphere microbial community from Knoxville, Tennessee, USA Bioengineered switchgrass rhizosphere microbial community from Knoxville, Tennessee, USA - 26-1 3300001310 Metagenome Analysis released by JGI data releasing policy No Yes jliu36@utk.edu Jiang Liu No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 35.98 -83.92 127723 448 3 0 4 2 0.0 Metagenome 3300034195 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17 DOE Joint Genome Institute (JGI) 3300034195 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9096 -147.9451 809611047 2049023 662 7 1198 13 SRX7633905 Unrestricted 7.01 Metagenome 3300055452 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.16C.14 SIP fraction DOE Joint Genome Institute (JGI) 3300055452 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 174172525 346038 96 44 162 67 Unrestricted 11.59 Metagenome 3300043430 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Flint River, Newton, Georgia, USA - flintriver_2019_sw_WHONDRS-S19S_0015 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043430 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 31.1858 -84.4372 777629841 1277079 497 59 716 68 Unrestricted 17.4 Metagenome 3300012281 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00672 Weill Cornell Medical College 3300012281 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.74 -73.99 52679356 91486 24 0 58 0 SRX822639 0.0 Metagenome 3300029903 *Microbiome Permanent Draft Soil microbial communities from Marcell Experimental Forest, Minnesota, USA Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Fen703 Georgia Institute of Technology 3300029903 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Terrestrial Unclassified Soil Unclassified Soil 47.50505 -93.48901667 70962911 129144 51 8 91 17 0.0 Metagenome 3300045607 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_2_F DOE Joint Genome Institute (JGI) 3300045607 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 140454761 158970 97 1 115 1 Unrestricted 117.11 Metagenome 3300045488 *Microbiome Permanent Draft Florida Reef Tract Coral Disease Outbreak Coral surface microbial communities from Montastraea cavernosa, offshore reef, Ft. Lauderdale, FL, USA - McD2 -2 University of Florida 3300045488 Metagenome Analysis MEGAHIT v. 1.1.4 released per PI No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified coral surface 26.16 -80.1 129466425 182328 40 3 35 7 0.0 Metagenome 3300059584 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Biomass microbial communities from acid-phase anaerobic digester in WWTP, Madison, WI, USA - 20211006_SampleD DOE Joint Genome Institute (JGI) 3300059584 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Sludge Anaerobic digester Unclassified Biomass 43.0333 -89.3563 60970660 74810 74 0 87 0 Unrestricted 0.0 Metagenome 3300070623 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_004-O-20190619-COMP-DNA1 3300070623 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 27189939 77728 57 9 119 15 0.0 Metagenome 3300042371 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME11Jan2014D0-rr0827 DOE Joint Genome Institute (JGI) 3300042371 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 695237288 1124478 236 43 308 59 Unrestricted 17.85 Metagenome 3300019872 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - H1a1 DOE Joint Genome Institute (JGI) 3300019872 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9763 -107.0041 74526455 186927 241 23 462 37 SRX3959607, SRX3959606 Unrestricted 0.0 Metagenome 3300025808 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 0.8 um filter (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025808 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 338735700 643983 411 12 623 21 SRX2770555 Unrestricted 0.0 Metagenome 3300009100 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Bulk soil microbial communities from a Populus tree surrounding site in Tennessee, USA - Soil MetaG P. deltoides SBSDD2 DOE Joint Genome Institute (JGI) 3300009100 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Environmental Terrestrial Tree plantation Soil Unclassified Bulk soil 35.8443 -83.9607 4243433916 8173012 1946 100 3215 164 SRX2840489 Unrestricted 0.0 Metagenome 3300012039 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT534_2 DOE Joint Genome Institute (JGI) 3300012039 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8894 -106.9083 392545333 892641 344 29 727 51 SRX3527530 Unrestricted 0.0 Metagenome 3300023244 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #93 DOE Joint Genome Institute (JGI) 3300023244 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 152968368 283657 117 0 185 0 SRX4395981 Unrestricted 22.04 Metagenome 3300026201 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026201 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 394344702 857245 350 15 550 31 SRX2781556 Unrestricted 0.0 Metagenome 7000000444 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 763901136 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000444 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 133303628 213382 0 0 0 0 0.0 Metagenome 3300070969 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_002-M-20180716-COMP-DNA1 3300070969 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 26448767 78884 74 6 133 2 0.0 Metagenome 3300006094 *Microbiome Permanent Draft Petroleum reservoir microbial communities from Reconcavo Basin, Brazil, analyzing oil degradation Petroleum reservoir microbial communities from Reconcavo Basin, Brazil, analyzing oil degradation - Bahia-well BA- 1 3300006094 Metagenome Analysis Spades released by JGI data releasing policy No Yes inatalia.sierra@gmail.com Isabel Natalia Sierra Garcia No Environmental Terrestrial Oil Oil reservoir Unclassified Petroleum reservoir -12.2 -38.11 131955512 255814 52 0 108 0 0.0 Metagenome 3300037852 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_11 DOE Joint Genome Institute (JGI) 3300037852 Metagenome Analysis metaspades v. 3.13.0 Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 3582649294 5661193 483 15 813 23 SRX9140449 Unrestricted 13.93 Metagenome 3300007873 *Microbiome Permanent Draft Army ant gut microbial communities Neotropical army ants gut microbial communities from Monteverde, Costa Rica - Labidus sp. Gut microbial communities of Labidus sp. 3300007873 Metagenome Analysis IDBA-UD released by JGI data releasing policy Yes Yes jar337@drexel.edu, yihu.bnu@gmail.com Jacob Russell, Yi Hu No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Neotropical army ants gut 10.306961 -84.809844 200882761 196037 1 13 2 43 0.0 Metagenome 3300003667 *Microbiome Permanent Draft Coalbed water microbial communities from the Lithgow State Coal Mine, New South Wales, Australia Lithgow State Coal Mine Metagenomic Study (LSCM 3 Late (Sample 2)) 3300003667 Metagenome Analysis LSCM3L released by JGI data releasing policy Yes Yes john_webster89@hotmail.com John Webster No Environmental Aquatic Groundwater Freshwater Coalbed water Coalbed water -33.460524 150.168149 152136813 238437 1952 3 220 0 0.0 Metagenome 3300002030 *Microbiome Permanent Draft Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease - BBAY60 3300002030 Metagenome Analysis IDBA-UD + SOAPdenovo + GAA released by JGI data releasing policy No Yes t.thomas@unsw.edu.au Torsten Thomas No Host-associated Algae Ectosymbionts Red algae Unclassified Delisea pulchra -33.59 151.13 473439396 1483412 232 63 425 111 0.0 Metagenome 3300003955 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Enrichment cultures from Harmful Algal Blooms in Lake Erie, HABS-00-39869 University of Michigan 3300003955 Metagenome Analysis IDBA-UD v1.1.1 released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lentic Freshwater Unclassified Freshwater -77.611214 163.119356 18174122 17822 16 0 13 0 0.0 Metagenome 3300050317 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_82 DOE Joint Genome Institute (JGI) 3300050317 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.598 161.007 182638298 294169 17 11 20 13 SRX18235985 Restricted 72.35 Metagenome 3300026921 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 28 (SPAdes) DOE Joint Genome Institute (JGI) 3300026921 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 87018135 197333 76 0 168 0 SRX4340705 Unrestricted 0.0 Metagenome 7000000222 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 861967750 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000222 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 110524758 185779 0 0 0 0 0.0 Metagenome 3300037249 *Microbiome Permanent Draft Rumen fluid microbial communities from dairy cows in UC Davis, California, USA Rumen fluid microbial communities from dairy cow in UC Davis, California, USA - UCD_Rumen_Seaweed_2555 DOE Joint Genome Institute (JGI) 3300037249 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bmroque@ucdavis.edu Breanna Roque No Host-associated Mammals Stomach Digestive system Rumen fluid rumen fluid 38.5368 -121.7595 1579046086 2362942 907 38 1557 48 SRX8670577 Unrestricted 15.48 Metagenome 3300003689 *Microbiome Permanent Draft Geitlerinema sp PCC 9228 Sequencing a coculture of Geitlerinema sp PCC 9228 University of Michigan 3300003689 Metagenome Analysis IDBA 1.1.1 released per Supratim No Yes sgrim01@gmail.com Sharon Grim No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats benthic mat 8540486 8439 4 0 2 0 0.0 Metagenome 3300009084 *Microbiome Permanent Draft Freshwater microbial communities from lake liftoff mats and glacier meltwater in Antarctica Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-03 (megahit assembly) DOE Joint Genome Institute (JGI) 3300009084 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes slonczewski@kenyon.edu Joan Slonczewski No Environmental Aquatic Ice Freshwater Liftoff microbial mat Freshwater -77.605 163.163 2901273730 5054607 1459 58 2063 101 SRX2522269 Unrestricted 17.53 Metagenome 3300012993 *Microbiome Permanent Draft Freshwater microbial communities from ponds in Paraiba State, Brazil Freshwater microbial communities from ponds in Paraiba State, Brazil - PAR-5 First assembly Federal University of Rio de Janeiro 3300012993 Metagenome Analysis MetaVelvet released by JGI data releasing policy No Yes juline.walter@gmail.com Juline Walter No Environmental Aquatic Pond Freshwater Unclassified freshwater -7.407218 -36.007209 142325234 519950 999 10 1608 13 0.0 Metagenome 3300040562 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_026-M-20140618-COMP-DNA1 Argonne National Laboratory 3300040562 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 2534196 7599 32 4 49 12 ERX2134027 0.0 Metagenome 3300045283 *Microbiome Permanent Draft Forest soil microbial communities from boreal-temperate forests in Minnesota, USA Forest soil microbial communities from Cloquet Forestry Center, Minnesota, USA - Cloquet DRY WD D6 DOE Joint Genome Institute (JGI) 3300045283 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pankaj.trivedi@colostate.edu Pankaj Trivedi No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 46.31 -92.3 1337433367 2327271 457 25 742 30 Unrestricted 16.92 Metagenome 3300043645 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 272-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043645 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9793 -107.0382 465798030 1313530 470 27 953 43 Unrestricted 6.33 Metagenome 3300013680 *Microbiome Permanent Draft Lung microbial and viral communities from cystic fibrosis patients in San Diego, USA Lung microbial and viral communities from cystic fibrosis patients in San Diego, USA - CF1-1A-St-MgMD-nonhuman San Diego State University 3300013680 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Sputum/Phlegm Respiratory system Unclassified Human lung 13848211 23427 25 1 22 4 0.0 Metagenome 3300029428 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 008_6_3_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029428 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 210206419 279613 222 1 296 0 0.0 Metagenome 3300023111 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E1 DOE Joint Genome Institute (JGI) 3300023111 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Elk feces 38.04 -122.5 94045786 218712 363 3 567 9 SRX4415389 Unrestricted 8.07 Metagenome 3300043057 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8NT15 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043057 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 8903853 27208 31 2 50 4 SRX8379641 Unrestricted 30.22 Metagenome 3300070987 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Northern Great Plains Research Laboratory, North Dakota, USA - NOGP_002-M-20200701-COMP-DNA1 3300070987 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 9927782 28882 38 4 76 7 0.0 Metagenome 3300053040 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Biomass microbial communities from acid-phase anaerobic digester in WWTP, Madison, WI, USA - 20210121_SampleA DOE Joint Genome Institute (JGI) 3300053040 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Sludge Anaerobic digester Unclassified Biomass 43.03331 -89.35633 190630105 195321 148 0 162 0 Unrestricted 17.76 Metagenome 3300038803 *Microbiome Permanent Draft Activated sludge bacterial and viral communities from EBPR bioreactors in Australia Activated sludge bacterial and viral communities from EBPR bioreactors in Queensland, Australia - SBR4-V90806 California Institute of Technology 3300038803 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Activated sludge -27.49999 153.01209 16196599 33270 5 0 7 4 SRX1077118 0.0 Metagenome 3300039608 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_003-O-20160720-COMP-DNA1 Battelle Memorial Institute 3300039608 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 87123195 227699 180 34 327 67 0.0 Metagenome 3300047197 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2014 IH-SL_9cm DOE Joint Genome Institute (JGI) 3300047197 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.213 19.0242 292864339 498760 184 7 403 6 Restricted 22.32 Metagenome 3300013984 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01030 Weill Cornell Medical College 3300013984 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.67 -73.85 10742872 15623 13 1 19 1 SRX822992 0.0 Metagenome 3300044701 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Assiniboine River, Winnipeg, Manitoba, Canada - assiniboineriver_2019_sw_WHONDRS-S19S_0005 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300044701 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 49.8687 -97.408 985035445 1603753 413 112 515 155 Unrestricted 22.56 Metagenome 2140918009 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3 v5 (version 5) DOE Joint Genome Institute (JGI) 2140918009 Metagenome Analysis Velvet released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 7377069 10254 17 0 24 0 Unrestricted 0.0 Metagenome 3300069371 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone Northern Range (Frog Rock), Northern Rockies, WY, USA - YELL_051-M-20180711-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069371 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 44.95348 -110.53914 1282924 4292 41 5 71 7 0.0 Metagenome 3300056849 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA12 DOE Joint Genome Institute (JGI) 3300056849 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 24661832 73330 78 3 144 1 Restricted 0.0 Metagenome 3300001386 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from the Cayman RIse, Caribbean Sea Cayman MG2b 3300001386 Metagenome Analysis Velvet, MetaVelvet, Minimus released by JGI data releasing policy No Yes menli@umich.edu Meng Li No Environmental Aquatic Oceanic Marine Unclassified Hydrothermal vent plume 18.43001 -81.46999 1872047 1865 1 0 1 0 0.0 Metagenome 3300029821 *Microbiome Permanent Draft Groundwater microbial communities from Horonobe Underground Research Laboratory (URL), Japan Groundwater microbial communities from Horonobe Underground Research Laboratory (URL), Japan - horonobe_ig3392 University of California, Berkeley 3300029821 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Released because its Published Yes Yes Yes 28350393 Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 45.045278 141.859444 268478502 352146 181 1 273 0 0.0 Metagenome 3300035139 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0608S12 DOE Joint Genome Institute (JGI) 3300035139 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8959 -97.0388 788587669 1991022 836 5 1533 6 SRX8258705 Unrestricted 5.97 Metagenome 3300011010 *Microbiome Permanent Draft Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice Molecular Research LP (MR DNA) 3300011010 Metagenome Analysis metaSPAdes released by JGI data releasing policy No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Ice Freshwater Unclassified Freshwater 41.825 -82.975 330861803 1046816 104 8 210 18 0.0 Metagenome 3300035666 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2015-rr0068 DOE Joint Genome Institute (JGI) 3300035666 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 2015713705 3836976 1030 258 1503 416 SRX8202059 Unrestricted 11.38 Metagenome 3300012883 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 DOE Joint Genome Institute (JGI) 3300012883 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 225855058 596177 543 64 1171 88 SRX3899454, SRX3899453 Unrestricted 0.0 Metagenome 3300022237 *Microbiome Permanent Draft Aerobic methanotrophic bioreactor microbial communities at MBL, Massachusetts, USA Aerobic methanotrophic bioreactor microbial communities at MBL, Massachusetts USA - Control 2 Individual assembly Marine Biological Laboratory 3300022237 Metagenome Analysis MegaHit v.1.0.6 released by JGI data releasing policy No Yes nuria.fgonzalez@gmail.com Nuria Fernandez Gonzalez No Engineered Bioreactor Unclassified Aerobic Unclassified Bioreactor 41.5265 -70.6731 24519854 27014 8 3 11 3 0.0 Metagenome 3300033602 *Microbiome Permanent Draft Metagenomic SGS 2x251 Staggered mock microbial community from ATCC, Manassa, VA, USA - ATCC8 Illumina 3300033602 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Laboratory 38.752303 -77.519989 25761455 35297 13 0 21 0 0.0 Metagenome 3300000521 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 28JUN2007 epilimnion v2 (version 2) DOE Joint Genome Institute (JGI) 3300000521 Metagenome Analysis released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 2339412 2513 0 0 0 0 Unrestricted 0.0 Metagenome 3300001019 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1094 DOE Joint Genome Institute (JGI) 3300001019 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 131940 452 17 1 25 4 SRX3311883 Unrestricted 0.0 Metagenome 3300049298 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA1 DOE Joint Genome Institute (JGI) 3300049298 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 318500799 755086 311 3 553 3 Unrestricted 6.99 Metagenome 3300038966 *Microbiome Permanent Draft Freshwater sediment microbial communities from Alaska Lake sediment microbial communtites from St. Paul Island, Alaska - PH081-PH155_481 University of California, Santa Cruz 3300038966 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Sediment Lake sediment 57.18 -170.25 12359940 34776 14 0 14 0 0.0 Metagenome 3300041491 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG AgResearch, New Zealand, Mosgeil 3300041491 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Unclassified Roots Unclassified White clover root -43.648506 172.343549 955085975 1777889 192 44 615 102 0.0 Metagenome 3300027884 *Microbiome Permanent Draft Soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, under manipulated climate change conditions. Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027884 Metagenome Analysis spades v. 3.11.1 Yes Yes jmtalbot@bu.edu; ptempler@bu.edu Jennifer Bhatnagar; Pamela Templer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 1623961594 3787009 449 65 883 89 SRX2838810 Unrestricted 0.0 Metagenome 3300056825 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Activated sludge microbial communities from bioreactor in WWTP, Madison, WI, USA - RS_2020-07-02_SampleB DOE Joint Genome Institute (JGI) 3300056825 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.03331 -89.35633 1052629354 1051299 323 36 343 36 Unrestricted 12.23 Metagenome 3300064757 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 590 in Spirit river, Alberta, Canada - S00JY_0743 Microbiome Insights 3300064757 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 56.14294627 -117.3944095 103585644 144327 53 1 98 2 0.0 Metagenome 3300029185 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012056-15 Beijing Genomics Institute (BGI) 3300029185 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 95140228 112046 73 0 97 0 0.0 Metagenome 3300048598 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Wood chips microbial communities from bioreactor in Golden, Colorado, USA - AB_TrOCs_1 DOE Joint Genome Institute (JGI) 3300048598 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Unclassified Wood chips 39.7555 -105.2211 1071112994 1279667 434 10 585 14 Unrestricted 37.1 Metagenome 3300028788 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_2 DOE Joint Genome Institute (JGI) 3300028788 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 894591501 1764417 375 55 554 94 SRX5355758 Unrestricted 0.0 Metagenome 3300008975 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T14 (1) BES Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2) Shell Corporation 3300008975 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 129477637 471874 196 0 306 4 0.0 Metagenome 3300011651 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00343 Weill Cornell Medical College 3300011651 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -74.01 33239045 45869 7 0 15 0 SRX822316 0.0 Metagenome 3300047404 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Congo River, Brazzaville, Congo - CONGO_047 DOE Joint Genome Institute (JGI) 3300047404 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater -4.3092 15.2356 292758904 670579 362 31 600 64 Unrestricted 19.06 Metagenome 7000000210 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159247771 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000210 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 88262983 155670 0 0 0 0 0.0 Metagenome 3300027219 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1546A-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027219 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2311 -123.8825 142043110 304587 154 4 232 3 SRX2753621 Unrestricted 0.0 Metagenome 3300067165 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210608_12_05 DOE Joint Genome Institute (JGI) 3300067165 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 335907603 531898 182 136 264 170 Unrestricted 0.0 Metagenome 3300042533 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0826F_E14_072516_1472 DOE Joint Genome Institute (JGI) 3300042533 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.1836 -97.9974 114716130 317662 233 14 386 24 Unrestricted 6.88 Metagenome 3300022747 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17_Aug_MG DOE Joint Genome Institute (JGI) 3300022747 Metagenome Analysis spades v. 3.11.1-check Yes Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 358624203 709989 375 10 521 22 SRX4479291 Unrestricted 23.72 Metagenome 3300033889 *Microbiome Permanent Draft Metagenomes from anaerobic digester of solid waste Leachate microbial community from anaerobic digester in University of Toronto, Ontario, Canada - S80W1 SP Beijing Genomics Institute (BGI) 3300033889 Metagenome Analysis spades v. 3.12.0 released per submitter Yes Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Engineered Bioreactor Leachate Anaerobic Unclassified leachate 43.6629 -79.3957 1004905460 2736976 640 15 1430 18 0.0 Metagenome 3300005675 *Microbiome Permanent Draft Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia Enhanced biological phosphorus removal bioreactor viral communities from the University of Queensland, Australia - SBR4-V90806 Phage Sequencing University of Queensland 3300005675 Metagenome Analysis CLC 6.0 Released per Connor Skennerton (Sep 15, 2015) No Yes c.skennerton@gmail.com Connor Skennerton No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor lab-scale EBPR bioreactor -27.49999 153.012098 18892079 38488 6 4 11 7 0.0 Metagenome 3300048077 *Microbiome Permanent Draft Marine and freshwater sediment microbial communities from various locations Freshwater sediment microbial communities from creek in Powell, Michigan, United States - HM 14 DOE Joint Genome Institute (JGI) 3300048077 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes smtechtm@mtu.edu Stephen Techtmann No Environmental Aquatic Sediment Freshwater Unclassified Freshwater sediment 46.8377 -87.8975 358843648 1102166 579 27 1040 35 Unrestricted 6.88 Metagenome 3300035528 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B1.4_Sample1.Rodeo4.Well665 DOE Joint Genome Institute (JGI) 3300035528 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 116792074 193028 100 0 189 0 SRX8347961 Unrestricted 135.24 Metagenome 3300036104 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Scytolyngbya sp. HA4215-MV1 and co-occurring heterotrophs from Freshwater from Laie Falls, Oahu, Hawaii, United States - 20190130_49 DOE Joint Genome Institute (JGI) 3300036104 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Aquatic Creek Freshwater Unclassified Freshwater 21.6028 -157.956 29778389 34841 10 1 14 1 SRX8849272 Unrestricted 328.74 Metagenome 3300026195 *Microbiome Permanent Draft Anaerobic biogas reactor microbial communites from Washington, USA Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_B C13 SIP DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026195 Metagenome Analysis spades v. 3.11.1 Yes Yes dacb@uw.edu David Beck Yes 28895946 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic biogas reactor 47.6525 -122.3049 379091379 655298 316 3 467 3 SRX2339082 Unrestricted 0.0 Metagenome 3300039090 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - WEM-3_at_2-3_cm Genome Quebec 3300039090 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89896 -73.80984 393682716 1043419 546 15 1175 25 0.0 Metagenome 3300037673 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR14_LV DOE Joint Genome Institute (JGI) 3300037673 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Crustal Fluids crustal fluids 47.761 -127.7612 253844722 366570 172 0 283 0 SRX9096834 Unrestricted 152.25 Metagenome 3300040581 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Mid-Atlantic, VA, USA - SCBI_005-M-20170719-COMP-DNA1 Battelle Memorial Institute 3300040581 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89292 -78.1395 1981276 6063 33 2 59 6 0.0 Metagenome 3300001928 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from the Tropical South Pacific Ocean - GS043 J. Craig Venter Institute (JCVI) 3300001928 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Oceanic Marine Unclassified Marine -7.661111 -116.11916 612652 1073 0 0 0 0 0.0 Metagenome 3300000475 *Microbiome Permanent Draft Honey bee gut microbial communities from West Haven, Conneticut, USA Honey bee gut microbial communities from West Haven, Conneticut, USA - Snodgrassella SCG AB-598-J21 Broad Institute 3300000475 Metagenome Analysis released per JGI data release policy No Yes philipp.engel@yale.edu Philipp Engel No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Honey bee gut 32.2743 -110.9388 2810392 4503 5 0 6 0 0.0 Metagenome 3300037338 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Scale Lake #989 DOE Joint Genome Institute (JGI) 3300037338 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5833 78.1746 324208606 741970 87 61 146 71 SRX9378920 Unrestricted 27.38 Metagenome 7000000699 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 737052003 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000699 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 1855673 5356 0 0 0 0 0.0 Metagenome 3300027690 *Microbiome Permanent Draft Enrichment culture microbial communities from Rutgers university that are MTBE-degrading Enrichment culture microbial communities from rom New York Harbor, USA that are MTBE-degrading - MTBE-NYH (New York Harbor Sulfidogenic) MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027690 Metagenome Analysis spades v. 3.11.1 Yes Yes haggblom@rutgers.edu Max M. Haggblom No Environmental Aquatic Harbor Marine Sediment Enrichment culture 40.67 -74.01 732554307 1179088 371 2 506 2 SRX2782493 Unrestricted 0.0 Metagenome 3300029073 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 240_4M Beijing Genomics Institute (BGI) 3300029073 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 28472885 27472 11 0 19 0 ERX491016 0.0 Metagenome 3300014938 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS68_3 University of Hohenheim 3300014938 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 79538473 122872 37 1 68 0 0.0 Metagenome 3300007652 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human palatine tonsils microbial communities from NIH, USA - visit 2, subject 764042746 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007652 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Tonsils Lymphatic system Palatine/Faucial Human 39.0042816 -77.1012173 42232577 83788 42 0 72 0 SRX024194 0.0 Metagenome 3300046306 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_47 DOE Joint Genome Institute (JGI) 3300046306 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9703 -106.997 72016279 211081 339 6 741 13 Restricted 0.0 Metagenome 3300069217 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Guanica State Forest and Biosphere Reserve, Puerto Rico - GUAN_043-M-20210921-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069217 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tropical forest Soil Unclassified Terrestrial soil 17.968869 -66.867682 2315546677 4963010 998 15 1897 23 0.0 Metagenome 3300009401 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T18 (3) (BES), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2) Shell Corporation 3300009401 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 101549124 378492 152 12 229 24 0.0 Metagenome 3300039774 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA Prairie soil microbial communities from Boone County, Iowa, USA - P31-WS-July2012 Iowa State University 3300039774 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land Prairie soil 42.01375 -93.783837 37331578 109888 106 5 209 8 0.0 Metagenome 3300040178 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 072B_R1 University of Maryland 3300040178 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.53924 19.01614 7993946 14335 29 2 51 3 0.0 Metagenome 3300037225 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 E-3-X DOE Joint Genome Institute (JGI) 3300037225 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0467 818881819 1490762 378 0 608 1 SRX8161262 Unrestricted 10.05 Metagenome 3300045797 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - G1-R1-B DOE Joint Genome Institute (JGI) 3300045797 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.048 322780836 663448 170 18 263 43 Unrestricted 6.86 Metagenome 3300025587 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC125_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025587 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 37.78 -122.42 325937571 605475 436 0 684 0 SRX2338907 Unrestricted 0.0 Metagenome 3300007021 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 158924089 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007021 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 8944531 27062 18 0 39 2 SRX024706, SRX024649, SRX024650 0.0 Metagenome 3300014305 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleB_D1 DOE Joint Genome Institute (JGI) 3300014305 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.224476 -122.019341 296401648 709011 364 5 665 16 SRX7188133 Unrestricted 0.0 Metagenome 3300003802 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29Oct07 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003802 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 44310078 119834 30 24 63 39 SRX2565364 Unrestricted 0.0 Metagenome 3300033999 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from deep shales in Oklahoma, United States - M1-7-2 DOE Joint Genome Institute (JGI) 3300033999 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back fracking water 35.784 -98.26 195297360 276192 202 6 264 3 SRX7525006 Unrestricted 300.94 Metagenome 3300036523 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C6-7A DOE Joint Genome Institute (JGI) 3300036523 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 73446905 237665 159 3 302 6 SRX8805752 Unrestricted 4.37 Metagenome 3300016464 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water reservoir in Singapore - WB_Site 2, Aug Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016464 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Lake Freshwater Unclassified freshwater 1.28 103.74 125905584 177153 34 5 34 6 0.0 Metagenome 3300027372 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius imperfectus BELIZE.1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027372 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 398228858 468400 51 1 39 3 SRX3340563 Unrestricted 0.0 Metagenome 3300027994 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L134-311R-1 DOE Joint Genome Institute (JGI) 3300027994 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 398404505 931932 506 124 744 213 SRX5338621, SRX5338622 Unrestricted 0.0 Metagenome 3300005903 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_303 DOE Joint Genome Institute (JGI) 3300005903 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 354347280 1186993 437 7 859 11 SRX2564678, SRX2581040 Unrestricted 0.0 Metagenome 3300034046 *Microbiome Permanent Draft Deception Metagenome Glacier sediment microbial communities near Whalers Bay, Deception Island, Antarctica - WBC1 The Brazilian National Council for Scientific and Technological Development (CNPq) 3300034046 Metagenome Analysis IDBA-ud v. 1.1.1 released per Amanda Bendia -- GOLD-1013 No Yes amandagbendia@gmail.com Amanda Bendia No Environmental Aquatic Ice Freshwater Glacier glacier sediment -63.18 -60.67 25958417 38531 9 0 16 0 0.0 Metagenome 2081372013 *Microbiome Permanent Draft Hot spring microbial community from Yellowstone National Park, US Hot spring microbial communities from Yellowstone National Park, USA - Norris Geyser Basin sample DOE Joint Genome Institute (JGI) 2081372013 Metagenome Analysis JGI Released by Nikos bc they were more than 5 years old No Yes mkozubal@gmail.com Mark Kozubal Yes 23151644 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.732778 -110.708889 3.6 11197662 18118 0 0 0 0 0.0 Metagenome 3300002443 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP17-MB 3300002443 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300009808 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N2_40_50 DOE Joint Genome Institute (JGI) 3300009808 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380273 -119.2723038 146237584 330641 150 1 301 2 SRX2523198 Unrestricted 0.0 Metagenome 3300006335 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_2_0500m University of Hawaii 3300006335 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 588060406 1297026 839 58 1241 96 0.0 Metagenome 3300028367 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 3 #765 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028367 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 108684109 195033 95 21 134 30 SRX3241970 Unrestricted 0.0 Metagenome 3300038727 *Microbiome Permanent Draft Seagrass microbial communities from Seahorse Key, Florida, USA Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 University of Florida 3300038727 Metagenome Analysis Megahit v. 1.1.4 released by JGI data releasing policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Plants Unclassified Roots Unclassified seagrass root 29.14 -83.685 59434936 76248 16 5 24 6 0.0 Metagenome 3300049024 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - E16_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049024 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 302096362 696573 392 8 845 10 Unrestricted 0.0 Metagenome 3300034966 *Microbiome Permanent Draft Streptococcus thermophilus viral communities from infected culture grown on milk medium, Madison, Wisconsin, USA Streptococcus thermophilus viral communities from infected culture grown on milk medium, Madison, Wisconsin, USA - MOI-2a_34 Banfield Lab, University of California, Berkeley 3300034966 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Microbial Unclassified Bacteria Unclassified Streptococcus thermophilus 43.05 -89.3 1834363 2224 1 0 2 0 0.0 Metagenome 3300043629 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 282-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043629 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9796 -107.0378 661947980 1687410 504 18 871 44 Unrestricted 6.66 Metagenome 3300020508 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 15JUN2010 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020508 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 94956560 192055 86 12 130 10 SRX1988904 Unrestricted 0.0 Metagenome 3300005223 *Microbiome Permanent Draft Microbial communities from the Yellowstone National Park, bulk metagenomes as controls for mini-metagenomic methods Sylvan Springs Unknown 12.1A - Microbial communities from the Yellowstone National Park, bulk metagenomes as controls for mini-metagenomic methods Stanford University 3300005223 Metagenome Analysis SpadeV3 released per JGI data release policy No Yes brianyu@stanford.edu, brian.yu@czbiohub.or Brian Yu No Environmental Aquatic Hot (42-90C) Thermal springs Acidic hotspring 44.699217 -110.767467 3.8 58260958 98411 37 0 60 0 0.0 Metagenome 3300025569 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025569 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.045666 -121.866516 226693255 483685 190 1 325 2 SRX7142157 Unrestricted 0.0 Metagenome 3300050271 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_27 DOE Joint Genome Institute (JGI) 3300050271 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.492 160.907 388622838 590469 77 17 96 31 SRX18235915 Restricted 40.7 Metagenome 3300028016 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 DOE Joint Genome Institute (JGI) 3300028016 Metagenome Analysis spades v. 3.11.1 Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 59.9979 10.7895 76751448 179024 99 18 172 27 SRX5272043 Unrestricted 8.48 Metagenome 3300049363 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - 7-2 DOE Joint Genome Institute (JGI) 3300049363 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 179452819 499384 284 3 496 11 Unrestricted 7.09 Metagenome 3300025355 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Jul07 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025355 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 51709076 129360 40 27 86 124 SRX2565290 Unrestricted 0.0 Metagenome 3300043963 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TST20 DOE Joint Genome Institute (JGI) 3300043963 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.414 79878377 114316 102 6 115 8 SRX12687759 Unrestricted 145.97 Metagenome 3300027978 *Microbiome Permanent Draft Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027978 Metagenome Analysis spades v. 3.11.1 Yes Yes jeremy.rich@maine.edu Jeremy Rich No Environmental Aquatic Coastal Marine Sediment Marine sediment 743094999 1833244 631 23 1206 45 SRX2837916 Unrestricted 0.0 Metagenome 3300007785 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 2, subject 764224817 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007785 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 15298019 21862 11 5 18 5 SRX024153, SRX098552 0.0 Metagenome 3300070781 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_007-O-20200114-COMP-DNA1 3300070781 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 4386509 14183 34 3 64 7 0.0 Metagenome 3300017514 *Microbiome Permanent Draft Bras del Port Noviembre 2014 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CM2 Nov 2014 University of Valencia 3300017514 Metagenome Analysis idba.1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Non-marine hypersaline water 38.1922 -0.5918 42585211 147475 2 0 1 0 0.0 Metagenome 3300025100 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Zodletone spring, Oklahoma to study Microbial Dark Matter (Phase II) - Zodletone Spring source 0.5m metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025100 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; mostafa@okstate.edu Ramunas Stepanauskas; Mostafa Elshahed No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 244425745 637663 258 2 500 2 SRX2525190 Unrestricted 0.0 Metagenome 3300043043 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10WT15 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043043 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 8991142 28461 54 9 90 15 SRX8379337 Unrestricted 33.66 Metagenome 3300052796 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_CL_020D DOE Joint Genome Institute (JGI) 3300052796 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0589 10.44392 442281396 1192262 347 17 632 32 Unrestricted 8.12 Metagenome 3300028523 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_05JUN2017_LD1 DOE Joint Genome Institute (JGI) 3300028523 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 53163264 97394 9 27 4 48 SRX5345799 Unrestricted 23.05 Metagenome 3300008269 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763496533 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008269 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 132346122 167530 88 0 95 0 0.0 Metagenome 3300000628 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 24JUN2008 epilimnion DOE Joint Genome Institute (JGI) 3300000628 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300036389 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Brasilonema angustatum HA4187-MV1 and co-occurring heterotrophs from soil from Manoa Valley, Honolulu, Hawaii, United States - 20190130_7 DOE Joint Genome Institute (JGI) 3300036389 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Unclassified Soil Unclassified Soil 21.311 -157.823 60120535 70498 19 2 16 3 SRX8847254 Unrestricted 251.43 Metagenome 3300042217 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D154_1 DOE Joint Genome Institute (JGI) 3300042217 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 135099466 183075 71 6 100 14 Unrestricted 69.68 Metagenome 3300040194 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_009-M-20130731-COMP-DNA1 Argonne National Laboratory 3300040194 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 10167165 30531 34 7 55 12 0.0 Metagenome 3300060451 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210614_18_09 DOE Joint Genome Institute (JGI) 3300060451 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 440869591 631178 237 154 312 201 Unrestricted 31.29 Metagenome 3300042864 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jun2017-rr0340 DOE Joint Genome Institute (JGI) 3300042864 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 805192086 1189235 256 57 330 66 Unrestricted 19.67 Metagenome 3300005428 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV253 DOE Joint Genome Institute (JGI) 3300005428 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 757285744 1850859 813 12 1353 35 SRX2782445 Unrestricted 0.0 Metagenome 3300045570 *Microbiome Draft Lake microbial communities from Canada Lake sediment microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-642 Genome Quebec 3300045570 Metagenome Analysis MEGAHIT v1.0.6 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Lake Sediment 48.448187 -123.529102 74544054 105332 79 3 115 7 0.0 Metagenome 3300014150 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG DOE Joint Genome Institute (JGI) 3300014150 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 663571146 1570539 595 31 1114 53 SRX3048036 Unrestricted 5.23 Metagenome 3300036367 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C3-9C DOE Joint Genome Institute (JGI) 3300036367 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 36220394 119171 120 4 196 5 SRX8818106 Unrestricted 4.0 Metagenome 3300045862 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from the Sylvan Springs Area, Yellowstone National Park, WY, United States - MSUNE_S_01 University of Wisconsin, Madison 3300045862 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.70007 -110.76842 110324565 264050 68 15 134 28 0.0 Metagenome 3300026727 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A4-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300026727 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 18987504 63781 102 3 173 5 SRX1991119 Unrestricted 0.0 Metagenome 3300065651 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 828a in Etizkom, Alberta, Canada - S00JY_0489 Microbiome Insights 3300065651 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.3635388 -111.0815252 59999153 92049 29 1 69 2 0.0 Metagenome 3300025084 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025084 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.51 -76.2 220323910 526856 0 0 0 0 SRX2928637 Unrestricted 0.0 Metagenome 7000000286 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159510762 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000286 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 132933093 214729 0 0 0 0 0.0 Metagenome 3300013170 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100606 University of Pennsylvania 3300013170 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 29681251 67839 17 0 43 1 SRX756488 0.0 Metagenome 3300069533 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_013-O-20131122-COMP-DNA1 re-annotation Argonne National Laboratory 3300069533 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 1748303 5937 32 9 77 11 ERX2134056 0.0 Metagenome 3300004159 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 51_LOW8 DOE Joint Genome Institute (JGI) 3300004159 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 59086761 129320 37 0 69 0 SRX2720598 Unrestricted 0.0 Metagenome 3300024497 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-225 DOE Joint Genome Institute (JGI) 3300024497 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Unclassified Plant litter Unclassified leaf litter 40.2198 -122.9842 108224742 199924 32 9 29 26 SRX4392065 Unrestricted 50.07 Metagenome 3300023486 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_26B University of California, Irvine 3300023486 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 87639742 83585 20 0 21 0 0.0 Metagenome 3300002248 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP02-MA 3300002248 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300004005 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWA_D2 DOE Joint Genome Institute (JGI) 3300004005 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.015041 -122.501831 972358201 2603315 899 10 1795 21 SRX7142284 Unrestricted 0.0 Metagenome 7000000072 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159753524 replicate 2 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000072 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 10838577 19211 0 0 0 0 0.0 Metagenome 3300045125 *Microbiome Permanent Draft Freshwater microbial communities from Guarapiranga Reservoir, S?o Paulo, Brazil Freshwater microbial communities from Guarapiranga Reservoir, S?o Paulo, Brazil - V00 Universidade de Sao Paulo 3300045125 Metagenome Analysis metaflye v. 2.8.3 released by Samir Atum Yes Yes stevani@iq.usp.br Cassius Stevani No Environmental Aquatic Reservoir Freshwater Unclassified freshwater -23.673056 -46.72 18457687 37333 9 3 11 2 0.0 Metagenome 3300017754 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D DOE Joint Genome Institute (JGI) 3300017754 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.2382 -86.2805 412067752 994028 2 1 2 0 SRX7205051 Unrestricted 28.62 Metagenome 3300047656 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BT11-01redo_D0 (version 2) DOE Joint Genome Institute (JGI) 3300047656 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3555 19.0492 253421046 434385 178 14 237 26 Restricted 0.0 Metagenome 3300006302 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159814214 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006302 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 42136310 62657 42 0 58 0 0.0 Metagenome 3300048574 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Wood chips microbial communities from bioreactor in Golden, Colorado, USA - AB_TrOCs_3 DOE Joint Genome Institute (JGI) 3300048574 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Unclassified Wood chips 39.7555 -105.2211 1166541279 1413792 473 16 566 28 Unrestricted 36.85 Metagenome 3300043131 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5SB15 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043131 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 32891789 98100 150 12 248 10 SRX8379443 Unrestricted 11.99 Metagenome 2199352036 *Microbiome Finished Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - Oil_sample_6 Alabama State University 2199352036 Metagenome Analysis GS De Novo assembly released per JGI data release policy No Yes panoble@washington.edu Peter A Noble No Environmental Aquatic Oceanic Marine Oil-contaminated Marine 30.15 -88.446 7.6 37685438 106368 73 0 122 0 0.0 Metagenome 2004247002 *Microbiome Permanent Draft Hypersaline mat microbial communities from Guerrero Negro, Baja California Sur, Mexico Hypersaline mat microbial communities from Guerrero Negro, Mexico - 2-3 mm depth into microbial mat DOE Joint Genome Institute (JGI) 2004247002 Metagenome Analysis No Yes nrpace@colorado.edu Pace, Norman Yes 18523433 Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Microbial mats Hypersaline mat 27.68908 -113.917 6-9 8286576 13343 12 0 3 0 0.0 Metagenome 3300007066 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160765029 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007066 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 48900909 68755 50 0 64 0 0.0 Metagenome 3300028104 *Microbiome Permanent Draft Soil microbial communities from hillslopes of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 2-1-E_N DOE Joint Genome Institute (JGI) 3300028104 Metagenome Analysis spades v. 3.11.1 Yes Yes laurameredith@email.arizona.edu Laura Meredith No Engineered Artificial ecosystem Soil Mesocosm Unclassified soil 32.5788 -110.8509 303699790 628352 231 6 416 6 SRX5246422 Unrestricted 33.83 Metagenome 3300021071 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L442-17m DOE Joint Genome Institute (JGI) 3300021071 Metagenome Analysis spades v. 3.10.1 Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.775 -93.818 637731351 1419326 567 8 951 17 SRX3984574 Unrestricted 15.36 Metagenome 3300044691 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_24CD DOE Joint Genome Institute (JGI) 3300044691 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.3724 -106.103 1015135214 1584347 205 56 311 81 SRX20649994 Unrestricted 14.64 Metagenome 3300001403 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample F53-2 shallow-092012 DOE Joint Genome Institute (JGI) 3300001403 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 88826087 220246 121 35 213 46 SRX1987695 Unrestricted 0.0 Metagenome 3300001322 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A26-65cm)- 6 month illumina University of Tennessee 3300001322 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 18952048 69174 178 18 294 26 0.0 Metagenome 3300007946 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 338793263 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007946 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 8058067 12653 7 0 12 4 SRX024072 0.0 Metagenome 3300007317 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763759525 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007317 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 109421184 171461 103 0 134 0 0.0 Metagenome 3300015264 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly) DOE Joint Genome Institute (JGI) 3300015264 Metagenome Analysis SPAdes v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 4038255823 9843298 803 63 1623 90 SRX3049000, SRX3048992, SRX3048993, SRX3048994, SRX3048995, SRX3048996, SRX3048997, SRX3048998, SRX3048999 Unrestricted 0.0 Metagenome 3300005821 *Microbiome Permanent Draft Marine sediment microbial communities from Aarhus Bay station M5, Denmark Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 25 cmbsf, PM1 Aarhus University 3300005821 Metagenome Analysis IDBA released per JGI data release policy No Yes starnas88@gmail.com Piotr Starnawski No Environmental Aquatic Coastal Marine Sediment Marine sediment 56.10555 10.463333 134451039 225861 111 1 164 3 0.0 Metagenome 3300044227 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T36 S DOE Joint Genome Institute (JGI) 3300044227 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.705 -64.2015 327749423 739905 17 0 23 0 Unrestricted 34.06 Metagenome 3300012262 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica - Metagenome #680 DOE Joint Genome Institute (JGI) 3300012262 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5602 78.1968 86277388 166627 90 3 160 3 SRX3242176 Unrestricted 0.0 Metagenome 3300005965 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Section #5 (SPADES assembly) (version 2) DOE Joint Genome Institute (JGI) 3300005965 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, jim.fredrickson@pnnl.gov Natasha Ivanova, Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.973481 -119.476345 81868494 124276 107 7 170 11 SRX3311906 Unrestricted 0.0 Metagenome 3300031359 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-40 DOE Joint Genome Institute (JGI) 3300031359 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.759 -70.891 599634006 1159628 368 1 630 4 SRX5358344 Unrestricted 10.65 Metagenome 3300010281 *Microbiome Permanent Draft Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 1_4_20_6_A1 metaG DOE Joint Genome Institute (JGI) 3300010281 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes Steve.Brown@lanzatech.com Steven Brown Yes 30202438 Engineered Bioreactor Anaerobic Semi-continuous Digestate Switchgrass degrading 43.726 -72.1429 251543013 433938 558 2 818 5 SRX3289993 Unrestricted 0.0 Metagenome 3300005657 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB14_bulk DOE Joint Genome Institute (JGI) 3300005657 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 1132489679 2898206 1076 40 1721 101 SRX2838876 Unrestricted 0.0 Metagenome 3300031565 *Microbiome Permanent Draft Soil microbial communities from Risofladan, Vaasa, Finland Soil microbial communities from Risofladan, Vaasa, Finland - UN-2 DOE Joint Genome Institute (JGI) 3300031565 Metagenome Analysis spades v. 3.12.0 Yes Yes eva.hogfors-ronnholm@novia.fi Eva Hogfors-Ronnholm Yes Environmental Terrestrial Coastal area Soil Acid sulfate soil soil 63.0472 21.7116 3162835084 6617093 945 24 1491 33 SRX5356288 Unrestricted 20.06 Metagenome 3300040371 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_004-M-20160809-COMP-DNA1 Battelle Memorial Institute 3300040371 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 6196065 17718 30 3 57 4 0.0 Metagenome 3300029196 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021317-140 Beijing Genomics Institute (BGI) 3300029196 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 104870283 135830 88 0 139 0 0.0 Metagenome 3300008618 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763435843 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008618 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 27662586 40650 24 0 32 0 0.0 Metagenome 3300032421 *Microbiome Permanent Draft Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3 DOE Joint Genome Institute (JGI) 3300032421 Metagenome Analysis spades v. 3.13.0 Yes Yes colin.averill@usys.ethz.ch; jmtalbot@bu.edu Colin Averill; Jennifer Bhatnagar No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 36.0 -78.0 1018694341 2421041 711 19 1399 39 SRX5787947 Unrestricted 0.0 Metagenome 3300020513 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 20JUL2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020513 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 96192471 196111 88 25 150 38 SRX1989904 Unrestricted 0.0 Metagenome 3300035241 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 DOE Joint Genome Institute (JGI) 3300035241 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 39.6589 -79.9058 1035222401 2767318 1023 57 1916 112 SRX8289791 Unrestricted 7.07 Metagenome 3300026637 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1109 (SPAdes) DOE Joint Genome Institute (JGI) 3300026637 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 2789024 9328 44 2 61 1 SRX3311882 Unrestricted 0.0 Metagenome 3300031518 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_148 DOE Joint Genome Institute (JGI) 3300031518 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 356616343 667018 211 0 311 0 SRX5650786 Unrestricted 183.12 Metagenome 3300009813 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N3_10_20 DOE Joint Genome Institute (JGI) 3300009813 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37379502 -119.2722385 155882206 352471 166 2 350 2 SRX2522537 Unrestricted 0.0 Metagenome 3300005045 *Microbiome Permanent Draft Permafrost microbial communities from Fox Tunnel, Fairbanks, Alaska, USA Permafrost microbial communities from Fox Tunnel, Fairbanks, Alaska, USA University of Chicago 3300005045 Metagenome Analysis Velvet 1.2.07 released per JGI data release policy No Yes rachel.mackelprang@csun.edu Rachel Mackelprang No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 64.953 -147.615 265442652 321846 29 1 30 1 0.0 Metagenome 3300045089 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_3_D DOE Joint Genome Institute (JGI) 3300045089 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 163283653 195499 96 2 121 2 Unrestricted 83.72 Metagenome 3300005918 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica- Antarctic Ace Lake Metagenome 02UKC DOE Joint Genome Institute (JGI) 3300005918 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli, Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 769682061 2143389 608 6 1110 13 SRX2746858 Unrestricted 0.0 Metagenome 2081372008 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Singapore and Univ of Illinois at Urbana, that are terephthalate-degrading Wastewater bioreactor microbial communities from Singapore -TA reactor DNA contigs from 4 sample DOE Joint Genome Institute (JGI) 2081372008 Metagenome Analysis Newbler No Yes sgtringe@lbl.gov Susannah Tringe Yes 20686509 Engineered Bioremediation Wastewater Terephthalate Bioreactor Wastewater bioreactor 1.332 103.756 35830898 50298 0 0 0 0 0.0 Metagenome 3300049305 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MA10 DOE Joint Genome Institute (JGI) 3300049305 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 297670040 767115 367 5 647 9 Unrestricted 7.37 Metagenome 3300046838 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 soil DOE Joint Genome Institute (JGI) 3300046838 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121531 -123.271207 5.17 979682486 1607132 310 18 506 27 Unrestricted 13.74 Metagenome 3300026186 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF51B (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026186 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 322039810 677056 183 110 299 161 SRX2781815 Unrestricted 0.0 Metagenome 3300037043 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Coal bed water microbial communities from the Powder River Basin, Montana, United States - T6FG11 DOE Joint Genome Institute (JGI) 3300037043 Metagenome Analysis metaspades v. 3.13.0 Yes Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Aquatic Groundwater Deep subsurface Coalbed methane well water coal bed water 45.4351 -106.3918 1067160732 1318113 365 9 483 7 SRX8395083 Unrestricted 21.72 Metagenome 3300070243 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_072-O-20190618-COMP-DNA1 3300070243 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 144457700 381727 112 14 277 11 0.0 Metagenome 3300014024 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S14-01-D University of California, Los Angeles 3300014024 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 129295156 187254 77 0 114 0 SRX869279 0.0 Metagenome 3300032112 *Microbiome Permanent Draft Microbial communities from the deep biosphere Fracture water microbial communities from Death valley, California, USA - NEVARES_DW2 re-assembly The Marine Biological Laboratory 3300032112 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Fracking water Deep subsurface Unclassified Fracture water 36.507 -116.819 212150101 523189 189 2 357 7 SRX791548, SRX1004494 0.0 Metagenome 3300070304 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_006-M-20180927-COMP-DNA1 3300070304 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 114538667 317272 173 4 398 9 0.0 Metagenome 3300045067 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-471 Genome Quebec 3300045067 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 54.656922 -126.924746 953926557 2127808 345 81 533 168 0.0 Metagenome 3300002566 *Microbiome Permanent Draft Mangrove soil microbial communities from Brazil, analyzing xylanase Mangrove soil microbial communities from Sao Paulo, Brazil - analyzing xylanase FOSM135 3300002566 Metagenome Analysis CLC Genomics Workbench released by JGI data releasing policy No Yes mylennepi@gmail.com Mylenne Silva No Environmental Aquatic Intertidal zone Marine Mangrove sediment Mangrove -23.5374 -46.125 35966 31 0 0 0 0 0.0 Metagenome 3300060298 *Microbiome Permanent Draft Soil microbial communities from experimental field in IAREC, Washington State University, Posser, WA, USA Lab enriched soil microbial communities from experimental field in IAREC, Washington State University, Posser, WA, USA - SM_0533_SR DOE Joint Genome Institute (JGI) 3300060298 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Agricultural land Soil Unclassified Soil 46.25 -119.73 208215168 256959 40 3 44 1 Unrestricted 336.79 Metagenome 3300027744 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027744 Metagenome Analysis spades v. 3.11.1 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 721418318 1460420 291 17 385 30 SRX2565007 Unrestricted 0.0 Metagenome 3300035114 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 DOE Joint Genome Institute (JGI) 3300035114 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 39.6589 -79.9058 1235415314 3336263 1196 112 2228 170 SRX8289296 Unrestricted 6.76 Metagenome 3300000738 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 29JUL2008 hypolimnion DOE Joint Genome Institute (JGI) 3300000738 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300058954 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Mesophilic digester sludge microbial communities from biogas plant in Weichs, Bavaria, Germany - PB8_MG_210318 DOE Joint Genome Institute (JGI) 3300058954 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 48.39537892 11.44760761 612464163 1015112 759 5 1136 9 Unrestricted 0.0 Metagenome 3300042688 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A62 University of California, Davis 3300042688 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 317471986 858080 352 8 722 12 0.0 Metagenome 3300037963 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_038 - TARA_R100000084 CEA Genoscope 3300037963 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 19.0284 64.5126 236581081 491539 27 0 41 0 0.0 Metagenome 3300006541 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge Cinachyra sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - cg27is University of New South Wales 3300006541 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au, e.botte@aims.gov.au; n.webster@aims.gov.au Nicole Webster, Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Cinachyra sp. (marine sponge) -9.8241 150.825833 14350761 17423 4 0 5 1 0.0 Metagenome 3300000457 *Microbiome Permanent Draft Enriched halophilic microbial communities from rock salt Saint-Guen, France Halophilic bacterium cultivated from rock salt, sample 2 Marine Biological Laboratory 3300000457 Metagenome Analysis No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Intertidal zone Marine Sediment Enriche halophilic 48.202047 -2.932644 4013635 4023 1 0 1 0 0.0 Metagenome 3300033749 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from gas well in Marcellus Shale, West Virginia, United States - MIP3H_01182017 Ohio State University 3300033749 Metagenome Analysis IDBA-UD v. 1.1.1 No Yes rebdaly@colostate.edu Rebecca Daly No Environmental Terrestrial Fracking water Deep subsurface Unclassified Fracking Water 39.6017 -79.9761 1553566 1763 0 0 0 0 0.0 Metagenome 3300020199 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300020199 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 925491055 1990276 359 53 711 60 SRX4365317, SRX4365316, SRX4365315 Unrestricted 20.53 Metagenome 3300048055 *Microbiome Permanent Draft Marine and freshwater sediment microbial communities from various locations Marine sediment microbial communities from Caspian Sea - Caspian_Core_1_4-8_cm DOE Joint Genome Institute (JGI) 3300048055 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes smtechtm@mtu.edu Stephen Techtmann No Environmental Aquatic Sediment Marine Unclassified Marine sediment 39.7455 50.4806 798296416 2039833 597 0 1113 2 Unrestricted 7.17 Metagenome 3300003504 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM DOE Joint Genome Institute (JGI) 3300003504 Metagenome Analysis revert back to private per Christa Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 24037369 69084 215 13 309 31 SRX2574410 Unrestricted 0.0 Metagenome 3300012233 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01034 Weill Cornell Medical College 3300012233 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.67 -73.86 22149771 28120 9 0 12 0 SRX822996 0.0 Metagenome 3300034818 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3 DOE Joint Genome Institute (JGI) 3300034818 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 39.6589 -79.9058 477596411 1321480 634 68 1152 98 SRX8289479 Unrestricted 6.67 Metagenome 2077657008 *Microbiome Permanent Draft Bovine rumen viral communities from University of Illinois Dairy Farm in Urbana, IL Bovine rumen viral communities from University of Illinois Dairy Farm in Urbana, IL, Cow rumen 7887 DOE Joint Genome Institute (JGI) 2077657008 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes bwhite44@illinois.edu Bryan White Yes 22004549 Host-associated Mammals Stomach Digestive system Rumen Bovine rumen 40.0886 -88.2202 73827693 211193 0 0 0 0 Unrestricted 0.0 Metagenome 3300022887 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #229 DOE Joint Genome Institute (JGI) 3300022887 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 197136157 426881 171 0 274 1 SRX4396750 Unrestricted 12.01 Metagenome 3300029643 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35704 Beijing Genomics Institute (BGI) 3300029643 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 78912998 98983 80 1 92 0 0.0 Metagenome 3300006479 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159369152 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006479 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 193552102 294233 203 0 268 1 0.0 Metagenome 3300045947 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P35SSC1_191108_f DOE Joint Genome Institute (JGI) 3300045947 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 899033867 1378081 300 0 476 1 SRX20650328 Unrestricted 12.19 Metagenome 3300001034 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized -NN607 DOE Joint Genome Institute (JGI) 3300001034 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 926756 3098 29 6 47 4 SRX3311856 Unrestricted 0.0 Metagenome 3300009336 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS874 FS874 no min length Marine Biological Laboratory 3300009336 Metagenome Analysis Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow diffuse flow hydrothermal vent 18.376 -81.797 33914669 104806 39 3 79 5 0.0 Metagenome 3300013307 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG DOE Joint Genome Institute (JGI) 3300013307 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil corn rhizosphere 42.3948 -85.3738 5244621899 10972502 4376 276 7348 456 SRX3900112 Unrestricted 7.18 Metagenome 3300043932 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - DMB5_5SRT_A DOE Joint Genome Institute (JGI) 3300043932 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35894622 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 151340863 219925 172 4 189 8 SRX12654475 Unrestricted 96.95 Metagenome 3300012014 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A10_80cm_6M University of Tennessee 3300012014 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 456219498 987417 107 2 206 5 SRX710602 0.0 Metagenome 3300034122 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2014-rr0181 DOE Joint Genome Institute (JGI) 3300034122 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1261833827 2576013 649 114 1018 187 SRX7622348 Unrestricted 10.05 Metagenome 3300029320 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 009_6_8_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029320 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 91381144 98138 54 0 90 0 0.0 Metagenome 3300039342 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 238_12M Beijing Genomics Institute (BGI) 3300039342 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 33363261 40596 30 0 54 0 ERX491011 0.0 Metagenome 3300030054 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1 DOE Joint Genome Institute (JGI) 3300030054 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 961954365 2041958 553 129 819 219 SRX5355667 Unrestricted 8.5 Metagenome 3300020061 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - U2c1 DOE Joint Genome Institute (JGI) 3300020061 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9365 -106.9428 634770037 1207425 272 50 542 79 SRX3948138, SRX3948137 Unrestricted 0.0 Metagenome 3300048109 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_111012.NP1 DOE Joint Genome Institute (JGI) 3300048109 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 486329377 991792 286 7 419 22 Unrestricted 18.21 Metagenome 3300003123 *Microbiome Permanent Draft Marine microbial communities from saline anoxic brine of the deep-sea hypersaline anoxic lake (DHAL) Thetis Hypersaline anoxic lake microbial communities from Lake Thetis, Australia 3300003123 Metagenome Analysis Newbler v. 2.5.3 Made public because these are downloaded from Genbank No Yes nckyrpides@lbl.gov Golyshin,P.N., Nikos Kyrpides No Environmental Aquatic Lake Freshwater Unclassified Marine -30.506732 115.081428 13096959 22108 15 0 24 0 0.0 Metagenome 3300056926 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Activated sludge microbial communities from bioreactor in WWTP, Madison, WI, USA - RS_2019-10-02_SampleA DOE Joint Genome Institute (JGI) 3300056926 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.03331 -89.35633 180047167 212489 63 7 80 6 Unrestricted 10.74 Metagenome 2149837017 *Microbiome Permanent Draft Human fecal microbial communities from the University of Arizona, for HMP training Human fecal microbial communities from the University of Arizona (HMP) - Ef3 Chinese National Human Genome Center, Beijing 2149837017 Metagenome Analysis released per JGI data release policy No Yes mbsulli@email.arizona.edu, mbsulli@gmail.com Matthew Sullivan No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 56.13 9.24 12609759 19843 180 0 321 0 0.0 Metagenome 3300031758 *Microbiome Permanent Draft Freshwater fungal communities from various locations Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123 DOE Joint Genome Institute (JGI) 3300031758 Metagenome Analysis spades v. 3.12.0 Yes Yes tyjames@umich.edu Timothy Y. James No Environmental Aquatic Lake Freshwater Lake biofilm freshwater 41.6898 -83.2813 2501393162 5145502 907 239 1306 405 SRX6422144 Unrestricted 20.81 Metagenome 3300032828 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4 DOE Joint Genome Institute (JGI) 3300032828 Metagenome Analysis spades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified soil 26.5065 -80.2537 4258166001 8882385 1627 56 2851 115 SRX5666830 Unrestricted 7.64 Metagenome 3300011146 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00837 Weill Cornell Medical College 3300011146 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.71 -73.98 31638812 44486 15 0 22 0 SRX822803 0.0 Metagenome 3300037131 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPN1-1-X0 DOE Joint Genome Institute (JGI) 3300037131 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3569 19.0502 348578712 605253 121 8 165 10 SRX8861426 Unrestricted 30.84 Metagenome 3300025377 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Section #5 (SPAdes) DOE Joint Genome Institute (JGI) 3300025377 Metagenome Analysis spades v. 3.11.1 Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.973481 -119.476345 125674444 244906 167 14 270 11 SRX3311906 Unrestricted 0.0 Metagenome 3300011693 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00831 Weill Cornell Medical College 3300011693 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.73 -74.0 24958561 33696 5 0 10 0 SRX822797 0.0 Metagenome 3300034411 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Seawater microbial communities from Algarve, Portugal - SW01 Molecular Research LP (MR DNA) 3300034411 Metagenome Analysis Metawrap workflow v. 1.0.8 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Environmental Aquatic Oceanic Marine Unclassified seawater 36.979778 -7.989111 56318745 72690 17 5 25 5 0.0 Metagenome 3300051906 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_CL_002D DOE Joint Genome Institute (JGI) 3300051906 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0544 10.45241 394514943 1027422 369 13 672 22 Unrestricted 8.2 Metagenome 3300022601 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 2, Chloramphenicol (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022601 Metagenome Analysis spades v. 3.11.1-check Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4148 -119.8405 1513889005 2664213 1977 40 2734 66 SRX3963289 Unrestricted 15.44 Metagenome 3300006913 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius sp. DAHAB.1 DOE Joint Genome Institute (JGI) 3300006913 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 709122216 1515712 16 25 17 43 SRX2711810 Unrestricted 0.0 Metagenome 3300010330 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4569-2 3-6 cm metaG (version 2) DOE Joint Genome Institute (JGI) 3300010330 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; teske@email.unc.edu Ramunas Stepanauskas; Andreas Teske No Environmental Aquatic Hydrothermal vents Marine Sediment Marine hydrothermal vent 27.0078 -111.4071 1159571654 2483439 1164 11 2100 17 SRX2525187 Unrestricted 0.0 Metagenome 3300071009 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_008-M-20180529-COMP-DNA1 3300071009 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 8312069 26390 72 3 154 3 0.0 Metagenome 3300045833 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_3_F DOE Joint Genome Institute (JGI) 3300045833 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 167756844 200146 97 1 133 1 Unrestricted 103.79 Metagenome 3300054563 *Microbiome Permanent Draft Soil microbial communities from pasture in Hopland Research and Extension Center, CA, USA Soil viral communities from pasture in Hopland Research and Extension Center, CA, USA - T2-H2O+P-B library kit 1SPlus DOE Joint Genome Institute (JGI) 3300054563 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes trubl1@llnl.gov Gareth Trubl No Environmental Terrestrial Pasture Soil Unclassified Soil 39.00177 -123.06967 96394522 249907 81 1 153 0 Unrestricted 194.62 Metagenome 3300069562 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_045-M-20160809-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069562 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 18342307 55060 44 1 93 1 0.0 Metagenome 2124908043 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active Layer A2 v2 (version 2) DOE Joint Genome Institute (JGI) 2124908043 Metagenome Analysis Velvet released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 72205836 133137 19 5 45 0 Unrestricted 0.0 Metagenome 3300027582 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_18_M0_10 (SPAdes) DOE Joint Genome Institute (JGI) 3300027582 Metagenome Analysis spades v. 3.11.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 350051795 692157 350 65 519 107 SRX2570689 Unrestricted 0.0 Metagenome 3300053116 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 endosphere DOE Joint Genome Institute (JGI) 3300053116 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.588071 -123.1939784 282675450 700514 212 31 349 66 Unrestricted 0.0 Metagenome 3300051226 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - P.F.S.T50 (v3) (version 3) DOE Joint Genome Institute (JGI) 3300051226 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 92352137 199317 104 20 202 29 SRX4550138 Unrestricted 0.0 Metagenome 3300020237 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291767-ERR318621) CEA Genoscope 3300020237 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 33.93 32.7322 16383351 44118 73 1 99 3 0.0 Metagenome 3300002521 *Microbiome Permanent Draft Pimephales promelas gut microbial communities from the University of Colorado, Denver, USA, during Triclosan exposure experiment Gut microbiomes of Pimephales promelas (fathead minnow) during Triclosan exposure experiment - D14S2- solvent control exposure day 14 3300002521 Metagenome Analysis idba_ud released by JGI data releasing policy No Yes christopher.s.miller@ucdenver.edu Christopher Miller, Christopher S. Miller No Host-associated Fish Intestine Digestive system Unclassified Pimephales promelas gut 39.7392 -104.9847 540871800 990434 16 5 26 5 0.0 Metagenome 3300030385 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_085 - TARA_R100001244 CEA Genoscope 3300030385 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -61.9689 -49.5017 218020050 474072 24 0 35 0 0.0 Metagenome 3300044653 *Microbiome Permanent Draft Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA - SWaN 13 years plot 1 DOE Joint Genome Institute (JGI) 3300044653 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes luizdomeignoz@gmail.com Luiz Domeignoz Horta No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 42.303 -72.1228 2006603845 3199008 371 78 561 114 SRX15792997 Unrestricted 12.97 Metagenome 3300027615 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius ilvae ELBA.1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027615 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 671152258 824835 4 1 4 1 SRX2711654 Unrestricted 0.0 Metagenome 3300007796 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 764143897 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007796 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 173992781 238201 145 0 205 0 0.0 Metagenome 3300001465 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN94 DOE Joint Genome Institute (JGI) 3300001465 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 39.23550963 -121.2836963 213498 745 24 0 48 2 SRX3311671, SRX3311670 Unrestricted 0.0 Metagenome 3300015270 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_22AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015270 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 136741426 253132 31 93 45 169 SRX3925757 Unrestricted 6.95 Metagenome 3300039068 *Microbiome Permanent Draft Freshwater lake viral communities from Lake Michigan, near Chicago, USA Freshwater lake viral communities from Lake Michigan, near Chicago, USA- 57Street140805.1V Genewiz Inc., Loyola University 3300039068 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.7904 -87.5781 34556500 64887 24 0 44 0 0.0 Metagenome 3300069407 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_044-M-20160727-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069407 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 8637636 27466 61 2 128 2 0.0 Metagenome 3300001418 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 DOE Joint Genome Institute (JGI) 3300001418 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 74727251 185141 106 16 173 22 SRX1987654 Unrestricted 0.0 Metagenome 3300027668 *Microbiome Permanent Draft Marine microbial communities from the West Antarctic Peninsula, for metatranscriptomic analysis Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027668 Metagenome Analysis spades v. 3.11.1 Yes Yes mattcott@udel.edu Matthew T. Cottrell No Environmental Aquatic Coastal Marine Unclassified Marine -64.8156 -64.0406 503000084 1023042 121 19 191 23 SRX2848177 Unrestricted 0.0 Metagenome 3300026110 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_A_D2_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026110 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4958 -122.1331 263920637 543741 241 5 379 5 SRX10967257 Unrestricted 0.0 Metagenome 3300043673 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 388-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043673 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9915 -107.063 1073511265 2273331 343 25 635 44 Unrestricted 10.31 Metagenome 3300039948 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Abby Road, Pacific Northwest, WA, USA - ABBY_063-M-20170606-COMP-DNA1 Battelle Memorial Institute 3300039948 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.76243 -122.33033 19000903 54877 62 3 112 9 0.0 Metagenome 3300015345 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_09MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015345 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 332062676 569374 11 51 20 75 SRX3922222 Unrestricted 10.4 Metagenome 3300043338 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-454 Genome Quebec 3300043338 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.4966 -99.688388 1153516858 2634612 316 31 493 52 0.0 Metagenome 3300005279 *Microbiome Permanent Draft Hoatzin crop microbial communities from Cojedes, Venezuela Hoatzin crop microbial communities from Cojedes, Venezuela, sample from fiber fraction 14 v1 DOE Joint Genome Institute (JGI) 3300005279 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes sgtringe@lbl.gov, maria.dominguez1@upr.edu Susannah Tringe, Maria Gloria Dominguez-Bello No Host-associated Birds Esophagus Digestive system Crop Hoatzin crop 8.956944 -68.299167 217972512 413816 479 9 693 22 Unrestricted 0.0 Metagenome 3300048872 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 285-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300048872 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9805 -107.0384 1043538795 2785686 1102 90 2156 115 Unrestricted 0.0 Metagenome 3300007845 *Microbiome Permanent Draft Clones from fosmidial library constructed using mangrove sediment Mangrove sediment microbial communities from Bertioga, Sao Paulo, Brazil - Clones from fosmid library, F6_contig1 Molecular Research LP (MR DNA) 3300007845 Metagenome Analysis IDBA released per JGI data release policy No Yes luc.g.cabral@gmail.com Luc?lia Cabral, Lucelia Cabral No Environmental Aquatic Unclassified Sediment Unclassified sediment -23.8553 -46.1394 29669 33 0 0 0 0 0.0 Metagenome 3300004063 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLB_D2 DOE Joint Genome Institute (JGI) 3300004063 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.209923 -122.033409 779117395 2184381 1018 13 2054 33 SRX7142964 Unrestricted 0.0 Metagenome 3300027409 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert microbial communities from Antarctic Dry Valleys - UQ836 (SPAdes) DOE Joint Genome Institute (JGI) 3300027409 Metagenome Analysis spades v. 3.11.1 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert -78.0482 164.1133 19833989 21030 9 0 11 0 SRX3329715 Unrestricted 0.0 Metagenome 7000000400 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764083206 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000400 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 118302205 225524 0 0 0 0 0.0 Metagenome 3300070841 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_005-O-20190807-COMP-DNA1 3300070841 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 2763597 8933 33 4 54 8 0.0 Metagenome 3300023200 *Microbiome Finished PPCP degradation by aerobic enrichment cultures (carbon source) Activated sludge enriched bacterial communities from WWTP in Fort Collins, Colorado, USA - LHP Argonne National Laboratory 3300023200 Metagenome Analysis MegaHit v. 1.0.6 released by Karen Rossmassler Yes Yes karen.rossmassler@gmail.com Karen Rossmassler No Engineered Wastewater Unclassified Activated Sludge Unclassified activated sludge 40.585258 -105.084419 174807749 387398 237 19 346 43 0.0 Metagenome 3300009144 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - Or.Sf.e DOE Joint Genome Institute (JGI) 3300009144 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes avisel@lbl.gov, laila.partida@cinvestav.mx Visel, Axel, Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.7658 -100.163 735868528 1234573 333 491 538 898 SRX2124746 Unrestricted 0.0 Metagenome 3300048560 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Woodchip biofilm microbial communities from lab scale WBR in Cornell University, Ithaca, NY, USA - rep1_drw_p1_w5 DOE Joint Genome Institute (JGI) 3300048560 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 981635286 1923722 557 26 904 63 Unrestricted 8.42 Metagenome 3300041447 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass leaf microbial community from Lincoln, Canterbury, New Zealand - RGL17_2 MetaG AgResearch, New Zealand, Mosgeil 3300041447 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 461953403 842380 129 368 484 298 0.0 Metagenome 7000000295 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765034022 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000295 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 108911420 190052 0 0 0 0 0.0 Metagenome 3300011334 *Microbiome Finished Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung Chunlab, Inc 3300011334 Metagenome Analysis SPAdes 3.8.2 released by JGI data releasing policy No Yes chojc@inha.ac.kr; krmoon518@gmail.com Jang-Cheon Cho; Kira Moon No Environmental Aquatic River Freshwater Unclassified Freshwater 37.6746111 127.3841278 12432900 17907 0 0 0 0 0.0 Metagenome 3300036441 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_C2 DOE Joint Genome Institute (JGI) 3300036441 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 92470128 286228 272 22 469 48 SRX8397087 Unrestricted 4.64 Metagenome 3300012517 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Unplanted soil (control) microbial communities from North Carolina - M.Soil.6.yng.070610 DOE Joint Genome Institute (JGI) 3300012517 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Environmental Terrestrial Unclassified Soil Unclassified unplanted soil 35.9076 -79.0506 183945783 486314 286 17 623 18 SRX3527515 Unrestricted 0.0 Metagenome 3300035006 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Cyanomargarita calcarea GSE-NOS-MK-12-04C and co-occurring heterotrophs from rock surface from Grand Staircase Escalante National Monument, Utah, United States - 20181105_13A DOE Joint Genome Institute (JGI) 3300035006 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Rock surface 37.48 -112.09 31961160 35498 11 0 14 0 SRX8237833 Unrestricted 284.61 Metagenome 3300003771 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 DOE Joint Genome Institute (JGI) 3300003771 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 287469528 457309 185 6 257 7 SRX2770660 Unrestricted 0.0 Metagenome 3300049332 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC17 DOE Joint Genome Institute (JGI) 3300049332 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 204656118 524957 344 9 736 11 Unrestricted 22.96 Metagenome 3300003936 *Microbiome Permanent Draft Processed tobacco microbial communities from Domestic Moist Snuff USA Processed tobacco microbial communities from Atlanta, GA, USA - retail point 1 - domestic moist snuff M6 Soapdenovo assembly Centers for Disease Control and Prevention (CDC), USA 3300003936 Metagenome Analysis Soapdenovo127 released per JGI data release policy No Yes wyu3@cdc.gov Tyx, Robert E. Tyx No Engineered Food production Unclassified Unclassified Unclassified Processed toboaco 33.881 -84.294 46130455 116020 169 6 247 9 0.0 Metagenome 3300012831 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched mosquito-associated microbial communities from UW Madison campus, WI, USA - HID1973K_E6 MG DOE Joint Genome Institute (JGI) 3300012831 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 86322778 126221 58 1 85 0 SRX3564651 Unrestricted 0.0 Metagenome 3300023495 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_77C University of California, Irvine 3300023495 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 85556225 84523 16 0 15 0 0.0 Metagenome 3300033404 *Microbiome Permanent Draft Metagenomic SGS 2x251 Riparian soil bacterial communities from Cottonwood Creek Park, Encinitas, CA, USA - R6 Illumina 3300033404 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Riparian soil Soil 33.051604 -117.289363 1554747046 4147957 829 29 1222 74 0.0 Metagenome 3300037629 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C1-9B DOE Joint Genome Institute (JGI) 3300037629 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 1004969235 2804398 1066 19 1891 42 SRX9167018 Unrestricted 6.3 Metagenome 3300055545 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.19W.14 SIP fraction DOE Joint Genome Institute (JGI) 3300055545 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 340898944 591117 59 28 85 30 Unrestricted 10.65 Metagenome 7000000642 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 159753524 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000642 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 577248 1370 0 0 0 0 SRX023628, SRX023627 0.0 Metagenome 3300005312 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila melanogaster male 1 gut Cornell University 3300005312 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy No Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila melanogaster male adult gut 42.875296 -77.006403 134673226 237647 7 8 9 17 0.0 Metagenome 3300059415 *Microbiome Permanent Draft Sorghum rhizosphere and bulk soil microbial communities from University of Arizona Maricopa Agricultural Center, AZ, USA Soil microbial communities from sorghum plot in University of Arizona Maricopa Agricultural Center, AZ, USA - plot7_0-15_20210708 DOE Joint Genome Institute (JGI) 3300059415 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Agricultural land Soil Unclassified Soil 33.07735 -111.974819 410409818 1001415 466 18 897 21 Unrestricted 7.3 Metagenome 3300001811 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR11_8A_Aug DOE Joint Genome Institute (JGI) 3300001811 Metagenome Analysis Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 39542105 73409 42 0 61 0 SRX3320858 Unrestricted 0.0 Metagenome 3300001537 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-65 cm-11A)- 1 week illumina University of Tennessee 3300001537 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 781521993 3032612 1275 24 2280 66 0.0 Metagenome 3300043739 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - FDOC_A25 DOE Joint Genome Institute (JGI) 3300043739 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.1424 -62.8813 890057650 2523716 523 3 1022 15 Unrestricted 8.44 Metagenome 3300013164 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100377 University of Pennsylvania 3300013164 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 30817957 59760 34 3 56 4 SRX756280 0.0 Metagenome 3300002314 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP01-I4 3300002314 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300014527 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 521_4M Beijing Genomics Institute (BGI) 3300014527 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 59052033 73540 38 0 44 0 ERX491168 0.0 Metagenome 3300055138 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim2 50-54 DOE Joint Genome Institute (JGI) 3300055138 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.353634 19.04734 2113231922 3026234 476 6 664 7 Restricted 0.0 Metagenome 3300010993 *Microbiome Permanent Draft CWC Coastal Marshes ECM15MPS05_Bassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method B (2X150bp) Molecular Research LP (MR DNA) 3300010993 Metagenome Analysis SPAdes 3.9.0 released by JGI data releasing policy No Yes aengel1@utk.edu Annette Engel No Environmental Aquatic Wetlands Freshwater Sediment sediment 29.45083 -89.75005 46774287 102317 45 6 87 9 0.0 Metagenome 3300038637 *Microbiome Permanent Draft Freshwater sediment microbial communities from Chandeleur Islands, USA Subtidal sediment core microbial communities from Chandeleur Islands, USA - ASubC2 University of Alabama 3300038637 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Wetlands Freshwater Sediment Subtidal sediment core 29.862806 -88.841194 11967587 36323 46 3 69 3 0.0 Metagenome 3300042562 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Mar2012-rd0103 DOE Joint Genome Institute (JGI) 3300042562 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1200383729 1735814 289 139 387 170 Unrestricted 22.34 Metagenome 3300042870 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME17May2012-rr0306 DOE Joint Genome Institute (JGI) 3300042870 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 946308483 1435957 268 56 361 83 Unrestricted 28.73 Metagenome 3300029029 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 367_12M Beijing Genomics Institute (BGI) 3300029029 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 98327796 121097 61 0 92 0 ERX491107 0.0 Metagenome 3300012106 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #136 DOE Joint Genome Institute (JGI) 3300012106 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 83319071 148209 77 1 137 1 SRX3296162 Unrestricted 0.0 Metagenome 3300059468 *Microbiome Permanent Draft Sorghum rhizosphere and bulk soil microbial communities from University of Arizona Maricopa Agricultural Center, AZ, USA Soil microbial communities from sorghum plot in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_20210810 DOE Joint Genome Institute (JGI) 3300059468 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Agricultural land Soil Unclassified Soil 33.07735 -111.974819 376942760 1068420 621 16 1215 28 Unrestricted 6.46 Metagenome 3300045564 *Microbiome Draft Lake microbial communities from Canada Lake sediment microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-631 Genome Quebec 3300045564 Metagenome Analysis MEGAHIT v1.0.6 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Lake Sediment 52.94939 -122.420822 125417989 177589 71 6 122 10 0.0 Metagenome 3300020026 *Microbiome Permanent Draft Freshwater viral communities from Chicago Sanitary Ship Canal, USA Freshwater viral communities from Romeoville, Illinois, USA - 2 University of Illinois-Urbana Champaign 3300020026 Metagenome Analysis SPADES v3.10.1 released by JGI data releasing policy No Yes wtliu@illinois.edu Wen-Tso Liu No Environmental Aquatic River Freshwater Unclassified Freshwater 41.64 -88.059722 24013079 37097 6 0 12 0 0.0 Metagenome 3300036848 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_Dec_plot3_rep2 DOE Joint Genome Institute (JGI) 3300036848 Metagenome Analysis metaspades v. 3.13.0 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6591 -80.6279 1618452549 2715342 603 7 1049 6 SRX8181610 Unrestricted 13.88 Metagenome 3300004837 *Microbiome Permanent Draft Marine surface microbial communities from the North Atlantic Ocean, enriched with methanesulfonate Marine surface microbial communities from the North Atlantic Ocean, enriched with methanesulfonate Molecular Research LP (MR DNA) 3300004837 Metagenome Analysis Megahit released per PI's request No Yes pmarco@ibmc.up.pt Paolo De Marco No Environmental Aquatic Oceanic Marine Photic zone Surface seawater 41.226956 -8.720528 42344971 104359 86 1 141 1 0.0 Metagenome 3300000030 *Microbiome Draft Wetland microbial communities from Twitchell Island in the Sacramento Delta Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site B1 Bulk v1 DOE Joint Genome Institute (JGI) 3300000030 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes stringe@lbl.gov, sgtringe@lbl.gov Susannah Tringe Yes 25991679 Environmental Aquatic Wetlands Marine Sediment Wetland 38.10726 -121.648538 153197283 433712 471 3 847 11 Unrestricted 0.0 Metagenome 3300012438 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100343 University of Pennsylvania 3300012438 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 7036859 18696 22 7 49 15 SRX756314 0.0 Metagenome 3300045231 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_5_B DOE Joint Genome Institute (JGI) 3300045231 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 205271302 242422 125 1 150 2 Unrestricted 114.74 Metagenome 3300018493 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet fungal communities from Santa Barbara, California, USA - pellet 3 DOE Joint Genome Institute (JGI) 3300018493 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4204 -119.6671 3839345863 6828323 7807 26 12239 42 SRX3964279 Unrestricted 11.8 Metagenome 3300010039 *Microbiome Permanent Draft Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56 DOE Joint Genome Institute (JGI) 3300010039 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes klgravuer@ucdavis.edu Kelly Gravuer No Environmental Terrestrial Grasslands Soil Unclassified Serpentine soil 38.8707 -122.4274 1879146781 4353330 1726 16 3159 40 SRX2525421 Unrestricted 0.0 Metagenome 3300070448 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_002-M-20200709-COMP-DNA1 3300070448 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 26906245 82973 111 5 226 9 0.0 Metagenome 3300011827 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01062 Weill Cornell Medical College 3300011827 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.67 -73.95 45622727 61953 21 0 25 0 SRX823024 0.0 Metagenome 3300047999 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_150114.NP1 DOE Joint Genome Institute (JGI) 3300047999 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 680089447 1604838 543 82 911 153 Unrestricted 11.59 Metagenome 3300025813 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_CordC_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025813 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 37.928627 -122.504829 291211542 533408 214 1 341 3 SRX7142925 Unrestricted 0.0 Metagenome 3300041572 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_322 MetaG AgResearch, New Zealand, Mosgeil 3300041572 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1904487588 4017900 332 38 1407 103 0.0 Metagenome 3300029045 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 343_M Beijing Genomics Institute (BGI) 3300029045 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 130858951 172347 105 0 170 0 ERX491098 0.0 Metagenome 3300029918 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_1 DOE Joint Genome Institute (JGI) 3300029918 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 372321951 892558 329 95 495 160 SRX5355600 Unrestricted 8.11 Metagenome 3300045741 *Microbiome Permanent Draft Sediment microbial communities from various rivers and their estuaries in the United States Sediment microbial communities from Eel River estuary, Massachusetts, United States - BTRS19_Sengupta_11S DOE Joint Genome Institute (JGI) 3300045741 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sg.aditi@gmail.com Aditi Sengupta No Environmental Aquatic Intertidal zone Marine Estuary sediment 41.9474 -70.63 1244649569 2191028 776 54 1362 86 Unrestricted 17.04 Metagenome 3300041860 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_400 MetaG AgResearch, New Zealand, Mosgeil 3300041860 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1483609836 2940063 279 23 1048 43 0.0 Metagenome 3300026122 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_D2_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026122 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Terrestrial Wetlands Soil Unclassified Soil 37.496 -122.1329 178004725 413955 242 7 432 10 SRX2523668 Unrestricted 0.0 Metagenome 3300070257 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_013-O-20180919-COMP-DNA1 3300070257 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 190397299 468383 116 30 251 51 0.0 Metagenome 2166559012 *Microbiome Permanent Draft Microbial communities from the Atlantic Ocean and human feces from France, grouped together for a comparative study Human fecal microbial communities from France, for comparison studies - Human6 (TS30 0825) 454 Life Sciences 2166559012 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Host-associated Mammals: Human Large intestine Digestive system Fecal Environmental and host-associated 39.0042816 -77.1012173 82524406 174734 662 1 1172 5 0.0 Metagenome 3300045953 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P35SSC1_191108_i DOE Joint Genome Institute (JGI) 3300045953 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 760246554 1172277 249 0 404 0 SRX20650189 Unrestricted 11.9 Metagenome 3300029965 *Microbiome Permanent Draft Fecal microbial communities from free-living howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from free-living howler monkeys from Sao Paulo Zoo, Brazil - Ind. 1-2, S2 Reanalysis Center for Advanced Technologies in Genomics, Sao Paulo University 3300029965 Metagenome Analysis metaSPAdes v. 3.12.0 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 147043717 262066 236 7 269 4 0.0 Metagenome 3300000443 *Microbiome Permanent Draft Soil microbial communities from Kansas Great Prairie, USA, amended with BrdU Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly DOE Joint Genome Institute (JGI) 3300000443 Metagenome Analysis Clc-workbench Released on PI's approval No Yes maude.david@yahoo.fr Maude David No Environmental Terrestrial Loam Soil Grasslands Soil 39.100992 -96.608258 1218305487 5974293 325 35 650 87 0.0 Metagenome 3300049858 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Athens, Georgia, USA - middleoconee_2019_sed_WHONDRS-S19S_0011 DOE Joint Genome Institute (JGI) 3300049858 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 33.955686 -83.437674 415862197 744240 619 14 1208 32 Restricted 0.0 Metagenome 3300016662 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water reservoir in Singapore - WB_Site 6b, Oct Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016662 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Lake Freshwater Unclassified freshwater 1.35 103.87 87427475 99888 17 1 17 2 0.0 Metagenome 7000000101 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 2, subject 764305738 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000101 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 21340820 30297 0 0 0 0 SRX024894 0.0 Metagenome 3300055529 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.19C.10 SIP fraction DOE Joint Genome Institute (JGI) 3300055529 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 229169333 448493 168 25 306 40 Unrestricted 11.26 Metagenome 3300005196 *Microbiome Permanent Draft Mallorca 2014 E2 E2 T6 University of Alicante 3300005196 Metagenome Analysis IDBA 1.1.1 PRE correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline 63101203 185665 8 0 12 0 0.0 Metagenome 3300044560 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TSR4 DOE Joint Genome Institute (JGI) 3300044560 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.414 87924840 130810 128 7 138 8 SRX12665963 Unrestricted 134.1 Metagenome 3300047440 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 soil DOE Joint Genome Institute (JGI) 3300047440 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121439 -123.270375 5.04 879886493 1427624 276 14 491 21 Unrestricted 12.26 Metagenome 3300026676 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A4-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300026676 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 8567334 26346 79 1 140 1 SRX1991113 Unrestricted 0.0 Metagenome 3300033081 *Microbiome Permanent Draft Mercury Periphyton Project Periphyton microbial communities from the St. Maurice River, Quebec, Canada - S1.F1 Genome Quebec 3300033081 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Periphyton Freshwater periphyton 47.885464 -73.754885 574155719 956010 312 158 573 241 0.0 Metagenome 3300008751 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764649650 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008751 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 27457690 48652 21 0 32 0 0.0 Metagenome 3300005643 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_750_biof (version 3) (version 2) DOE Joint Genome Institute (JGI) 3300005643 Metagenome Analysis metalrec v. metalrec version 1.0.2 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 524145400 797492 404 1 537 4 SRX2770504, SRX2770505, SRX2770508, SRX2770506, SRX2770507 Unrestricted 0.0 Metagenome 3300008063 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 764447348 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008063 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 152108150 169298 93 0 113 0 0.0 Metagenome 3300061583 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D10_SEK1_3_to_SEK1 DOE Joint Genome Institute (JGI) 3300061583 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.244 685987380 1046215 403 151 683 224 Unrestricted 0.0 Metagenome 3300056892 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_106-s41 day 365 DOE Joint Genome Institute (JGI) 3300056892 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1802259357 2673453 449 231 590 233 Unrestricted 39.14 Metagenome 3300043249 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8WP15 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043249 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 167753364 354062 148 1 239 2 SRX8379805 Unrestricted 23.29 Metagenome 7000000313 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 604812005 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000313 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 120282478 241830 0 0 0 0 0.0 Metagenome 3300042178 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Eunicella verrucosa from Algarve, Portugal - EV01H v2 Molecular Research LP (MR DNA) 3300042178 Metagenome Analysis Metawrap workflow v. 1.0.8 released by JGI data releasing policy Yes Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 45195038 47528 4 1 6 10 0.0 Metagenome 3300008943 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T14 (3) BES, Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2) Shell Corporation 3300008943 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com; tianakorin@googlemail.com Ian Head, Ian Head; Nicolas Tsesmetzis; Tetyana Korin No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 99902887 356604 111 0 265 3 0.0 Metagenome 3300015329 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_20JUN2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015329 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 199309432 340302 8 110 12 186 SRX3923069 Unrestricted 7.56 Metagenome 3300049451 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 soil DOE Joint Genome Institute (JGI) 3300049451 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.587532 -123.193385 6.48 153330632 287850 170 18 305 31 Unrestricted 24.17 Metagenome 3300017539 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS379 with 0.1UM filter JGI facility at Oak Ridge National Laboratory 3300017539 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 21084674 59401 24 13 41 15 0.0 Metagenome 3300025336 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Jul07 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025336 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 36848907 91664 37 21 74 44 SRX2565362 Unrestricted 0.0 Metagenome 3300005320 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila suzukii male 2 gut Cornell University 3300005320 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy No Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila suzukii male adult gut 42.875296 -77.006403 197555841 349852 18 15 28 28 0.0 Metagenome 3300006648 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T5 (3) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006648 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl .ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 23123489 44520 24 0 33 0 0.0 Metagenome 3300011703 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00664 Weill Cornell Medical College 3300011703 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.82 -73.93 32798091 49102 12 0 20 0 SRX822631 0.0 Metagenome 3300022791 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S5 Version 2 University of New South Wales 3300022791 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 36221002 63406 8 10 19 14 0.0 Metagenome 3300007530 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 809635352 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007530 Metagenome Analysis SPADES v3.6.2 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 88872038 174462 69 1 87 2 0.0 Metagenome 3300049260 *Microbiome Permanent Draft Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA - CNF8ET9 DOE Joint Genome Institute (JGI) 3300049260 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sydneyg@ucr.edu Sydney Glassman No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 33.6681 -117.456 667677952 1123178 352 86 563 118 Unrestricted 14.98 Metagenome 3300002475 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP19-I4 3300002475 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 20853656 66951 128 0 264 1 0.0 Metagenome 3300027526 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027526 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 244290915 663469 478 23 853 55 SRX2574350 Unrestricted 0.0 Metagenome 3300008511 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160765029 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008511 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 39608497 75872 38 0 69 0 0.0 Metagenome 3300017820 *Microbiome Finished Wastewater microbial communities from petroleum well in Natal, Brazil Wastewater microbial communities from petroleum well in Natal, Brazil - Consorcio_A National Laboratory for Scientific Computing (LNCC), Brazil 3300017820 Metagenome Analysis Geneious released by JGI data releasing policy No Yes marzinha1@gmail.com Marbella Fonseca No Engineered Wastewater Petrochemical Industrial wastewater Unclassified wastewater -5.795 -35.20944 6.91 648085524 2632234 8272 0 15421 25 0.0 Metagenome 3300026865 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 75 (SPAdes) DOE Joint Genome Institute (JGI) 3300026865 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 52679460 125425 66 0 136 1 SRX4341376 Unrestricted 0.0 Metagenome 3300026818 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A2-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300026818 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 29167064 96601 83 3 185 8 SRX2576217 Unrestricted 0.0 Metagenome 3300014274 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 236_L1_2014-7-23 San Diego State University 3300014274 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 6680657 15975 12 12 38 20 0.0 Metagenome 3300007829 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 159915365 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007829 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 3868778 4523 2 0 1 0 0.0 Metagenome 3300014493 *Microbiome Permanent Draft Permafrost microbial communities from Stordalen Mire, Sweden Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG DOE Joint Genome Institute (JGI) 3300014493 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rich.270@osu.edu Virginia Rich Yes 30013118 Environmental Terrestrial Wetlands Soil Permafrost Bog 68.35 19.05 1530482900 2781366 756 62 1263 96 SRX3593698 Unrestricted 8.07 Metagenome 3300021548 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina ""control"", cg10ic 200bp no Eukaryotes last" University of New South Wales 3300021548 Metagenome Analysis IDBA-UD released by Emmanuelle BOTTE Yes Yes n.webster@aims.gov.au; e.botte@aims.gov.au Nicole Webster; Emmanuelle BOTTE No Host-associated Porifera Unclassified Unclassified Unclassified Cinachyra sp. (marine sponge) -9.828217 150.820517 89092363 157365 79 4 128 6 0.0 Metagenome 3300025211 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP2053 (SPAdes) DOE Joint Genome Institute (JGI) 3300025211 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 14.53 -118.77 72936755 153163 87 1 144 1 SRX1982293 Unrestricted 0.0 Metagenome 3300019701 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BRC_1-2_MG DOE Joint Genome Institute (JGI) 3300019701 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 98350952 242632 224 15 391 36 SRX3983588 Unrestricted 3.64 Metagenome 3300057030 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E1P_30_32 DOE Joint Genome Institute (JGI) 3300057030 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.996961 -81.487381 1737498943 2608330 731 0 1181 0 Unrestricted 14.65 Metagenome 3300003977 *Microbiome Permanent Draft Deep Chlorophyll Maximum DCM 454 Life Sciences 3300003977 Metagenome Analysis CAM_LIB_001993 No Yes yotpope@gmail.com yotam popovich No Environmental Aquatic Coastal Marine Unclassified marine 38.06851 -0.23199 286497271 1007964 905 30 1626 73 0.0 Metagenome 3300010262 *Microbiome Permanent Draft Animal gut microbial communities from fecal samples from Wisconsin, USA Eastern black-and-white colobus group fecal microbial communities from Wisconsin, USA - Cm1105 metagenome DOE Joint Genome Institute (JGI) 3300010262 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes apneumann2@wisc.edu Anthony Neumann No Host-associated Mammals Large intestine Digestive system Fecal Eastern black-and-white colobus group fecal 43.07 -89.4 206085762 311657 517 1 795 1 SRX2506178 Unrestricted 0.0 Metagenome 3300070679 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_002-O-20190828-COMP-DNA1 3300070679 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 32915669 101350 64 3 125 8 0.0 Metagenome 3300021135 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 03JUN2009 hypolimnion DOE Joint Genome Institute (JGI) 3300021135 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu; rrmalmstrom@lbl.gov Katherine McMahon; Rex Malmstrom Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 192126459 395536 137 17 216 22 Unrestricted 0.0 Metagenome 3300041453 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG AgResearch, New Zealand, Mosgeil 3300041453 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Rhizoplane Roots Dairy farm pasture -43.648506 172.343549 886095671 2029616 235 27 727 105 0.0 Metagenome 3300043075 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver stomach microbial communities from Maple Ridge, British Columbia, Canada - Beaver1Stomach1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043075 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Stomach Digestive system Unclassified stomach 49.18 -122.54 179467267 363146 413 18 702 28 SRX8344119 Unrestricted 24.53 Metagenome 3300044647 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Jul2015-rr0283 DOE Joint Genome Institute (JGI) 3300044647 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1229161761 1801817 390 82 518 115 Unrestricted 15.74 Metagenome 3300023719 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_93C University of California, Irvine 3300023719 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 105533188 103279 20 0 19 0 0.0 Metagenome 3300018024 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100 DOE Joint Genome Institute (JGI) 3300018024 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 870554402 1619318 509 10 948 32 SRX3960464 Unrestricted 14.7 Metagenome 3300060363 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210531_04_09 DOE Joint Genome Institute (JGI) 3300060363 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 581765006 903929 209 77 273 126 Unrestricted 22.82 Metagenome 3300014298 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqB_D1 DOE Joint Genome Institute (JGI) 3300014298 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.209766 -122.033424 246999975 632244 376 4 755 6 SRX7186985 Unrestricted 0.0 Metagenome 3300027013 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N3_30_40 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027013 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37379502 -119.2722385 97046183 263291 187 4 417 6 SRX2523179 Unrestricted 0.0 Metagenome 3300038818 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog29 BILS 3300038818 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 4352237 10901 11 0 7 1 ERX1594851 0.0 Metagenome 3300020276 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_E500000075 (ERX289007-ERR315858) CEA Genoscope 3300020276 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 42.1874 17.7189 297970105 721477 226 14 450 19 0.0 Metagenome 3300037714 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_051817_90_100_jgi DOE Joint Genome Institute (JGI) 3300037714 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2113366475 3374219 796 14 1302 16 SRX9162000 Unrestricted 13.46 Metagenome 3300046352 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_142 DOE Joint Genome Institute (JGI) 3300046352 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9223 -106.9493 99348051 271642 358 29 637 44 Restricted 0.0 Metagenome 3300007606 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1569-02 DOE Joint Genome Institute (JGI) 3300007606 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2861 -123.7318 391815910 775052 308 16 503 34 SRX2753764 Unrestricted 7.73 Metagenome 3300025144 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Lake sediment bacterial and archeal communities from Gulf of Boni, Indonesia to study Microbial Dark Matter (Phase II) - ?I18A1 metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025144 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; aurele.vuillemin@gfz-potsdam.de Ramunas Stepanauskas; Aurele Vuillemin No Environmental Aquatic Lake Freshwater Sediment Lake sediment -2.75 121.05 7.2-7.4 544306806 1136967 463 2 836 4 SRX2525675 Unrestricted 0.0 Metagenome 3300056767 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB32 DOE Joint Genome Institute (JGI) 3300056767 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 141985616 339833 227 1 431 3 Restricted 0.0 Metagenome 3300070733 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_004-M-20180801-COMP-DNA1 3300070733 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 20047241 61658 80 31 163 45 0.0 Metagenome 3300003856 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - At.Am.rz DOE Joint Genome Institute (JGI) 3300003856 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes avisel@lbl.gov, laila.partida@cinvestav.mx Axel Visel, Laila P. Partida-Martinez No Host-associated Plants Rhizosphere Roots Unclassified Agave 21.0411 -103.9083 173202574 299561 169 15 315 23 SRX2122698 Unrestricted 0.0 Metagenome 3300044109 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_191 DOE Joint Genome Institute (JGI) 3300044109 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 329247377 847805 405 15 795 38 Unrestricted 7.14 Metagenome 3300012951 *Microbiome Permanent Draft Amended soil microbial communities from New York, USA to study carbon cycling Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG DOE Joint Genome Institute (JGI) 3300012951 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes twhitman@wisc.edu Thea Whitman No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.4531 -76.3842 1771716922 4318881 1685 44 3094 119 SRX3566484 Unrestricted 4.94 Metagenome 3300000248 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2009 P12 500m DOE Joint Genome Institute (JGI) 3300000248 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 25171894 Environmental Aquatic Oceanic Marine Aphotic zone Marine 48.97 -130.666667 91988334 236353 96 32 215 44 Unrestricted 0.0 Metagenome 3300027234 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1550A-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027234 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2328 -123.878 185038563 381646 221 26 340 32 SRX2753723 Unrestricted 0.0 Metagenome 3300028140 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_07AUG2017_LD1 DOE Joint Genome Institute (JGI) 3300028140 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 51369504 103800 35 53 43 86 SRX5345841 Unrestricted 20.4 Metagenome 3300034110 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171 DOE Joint Genome Institute (JGI) 3300034110 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 895718765 1899760 607 29 777 43 SRX7622415 Unrestricted 17.88 Metagenome 3300055383 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.19C.14 SIP fraction DOE Joint Genome Institute (JGI) 3300055383 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 228228336 446248 93 39 151 76 Unrestricted 10.53 Metagenome 3300029312 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 006_6_10_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029312 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 30916944 35809 20 1 26 6 0.0 Metagenome 3300066309 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Atlantic Neotropical, PR, USA - GUAN_049-M-20161004-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066309 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 17.96955 -66.8687 59771117 167833 71 3 146 7 0.0 Metagenome 3300001395 *Microbiome Permanent Draft Goat rumen microbial communities from Langston University, Oklahoma, USA Goat rumen fungal communities from Langston, Oklahoma, USA - velvetAssemble Cornell University 3300001395 Metagenome Analysis released per Rekha No Yes zsuping@tnstate.edu Suping Zhou No Host-associated Mammals Stomach Digestive system Rumen Goat rumen 35.453976 -97.515884 1577637560 8104223 1667 70 4088 85 0.0 Metagenome 3300037430 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - HLP_101317 DOE Joint Genome Institute (JGI) 3300037430 Metagenome Analysis metaspades v. 3.13.0 Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.896 -89.3636 335193824 930880 419 27 789 41 SRX9381783 Unrestricted 6.75 Metagenome 3300038676 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-06-2_at_2-3_cm Genome Quebec 3300038676 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89673 -73.73461 942016628 2390830 941 31 1958 49 0.0 Metagenome 3300047635 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA111-TCU DOE Joint Genome Institute (JGI) 3300047635 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6876 -83.5019 385434205 1024365 331 40 609 58 Unrestricted 8.6 Metagenome 3300002628 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A5a-11 DOE Joint Genome Institute (JGI) 3300002628 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 422397 1427 31 0 58 1 SRX1991141 Unrestricted 0.0 Metagenome 3300038411 *Microbiome Permanent Draft Acid mine drainage microbial communities from coal mines in Pennsylvania and Ohio, United States Lab enriched acid mine drainage microbial communities from Akron, Ohio, USA - PML1_0D DOE Joint Genome Institute (JGI) 3300038411 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shagun2260@gmail.com Shagun sharma No Engineered Wastewater Mine water Industrial wastewater Acid mine drainage acid mine drainage 41.0775 -81.5114 1156787902 3356820 1193 29 2124 54 SRX9404296 Unrestricted 7.17 Metagenome 3300045192 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_1_E DOE Joint Genome Institute (JGI) 3300045192 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 174057814 201965 121 1 130 2 Unrestricted 111.15 Metagenome 3300042194 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_051817_50_f DOE Joint Genome Institute (JGI) 3300042194 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2943951277 4875512 735 8 1297 19 Unrestricted 13.52 Metagenome 3300024579 *Microbiome Permanent Draft Cephalochordate Microbial Metagenomes Coastal seawater microbial communities from Tampa Bay, Florida, USA - NH019 University of California, San Diego, Scripps Institute of Oceanography 3300024579 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton No Environmental Aquatic Coastal Marine Unclassified coastal seawater 27.847583 -82.552861 26381752 33132 14 0 18 0 0.0 Metagenome 3300056789 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Activated sludge microbial communities from bioreactor in WWTP, Madison, WI, USA - RS_2019-10-09_SampleA (version 2) DOE Joint Genome Institute (JGI) 3300056789 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.03331 -89.35633 475798112 484253 177 7 183 7 Unrestricted 12.62 Metagenome 3300013592 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100713 University of Pennsylvania 3300013592 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 2963658 8659 17 0 13 1 SRX756137 0.0 Metagenome 3300046130 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_6_C DOE Joint Genome Institute (JGI) 3300046130 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 168302734 203643 94 1 109 2 Restricted 0.0 Metagenome 3300027561 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027561 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380143 -119.2723688 276369484 654302 230 0 416 1 SRX2523197 Unrestricted 0.0 Metagenome 3300024441 *Microbiome Permanent Draft Vaginal microbial communities from lab mice Vaginal microbial communities from lab mice with HSV-2 infection, Madrid, Spain - C5, day 1 Polytechnic University of Valencia 3300024441 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Vagina Reproductive system Unclassified mice vagina 40.4191094 -3.6725753 185429 340 0 0 0 0 0.0 Metagenome 3300032396 *Microbiome Permanent Draft STAs constructed wetland biome Wetland sediment microbial communities from Everglades, Florida, USA - STA44-Sample04_1 Combine4 University of Florida 3300032396 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy No Yes ng.hanh24@gmail.com Hanh Nguyen No Environmental Aquatic Wetlands Freshwater Sediment sediment 26.38 -80.51 6.6-8.4 274980515 365127 130 0 189 0 0.0 Metagenome 3300001576 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP2053 DOE Joint Genome Institute (JGI) 3300001576 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 14.53 -118.77 20711755 58232 51 0 77 0 SRX1982293 Unrestricted 0.0 Metagenome 3300069581 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Environmental Research Center, Mid-Atlantic, MD, USA - SERC_045-M-20170711-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069581 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89008 -76.56001 3887222 12565 24 4 60 5 0.0 Metagenome 3300020084 *Microbiome Permanent Draft Freshwater microbial communities from Lake Tanganyika, Tanzania Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200m DOE Joint Genome Institute (JGI) 3300020084 Metagenome Analysis spades v. 3.10.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater lake -4.9054 29.4853 1961195312 3795907 1199 74 1750 119 SRX3940582 Unrestricted 25.03 Metagenome 3300027232 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1551A-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027232 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.187 -123.8837 178520911 372531 205 23 301 28 SRX2753725 Unrestricted 16.77 Metagenome 3300002029 *Microbiome Permanent Draft Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease - BBAY59 3300002029 Metagenome Analysis IDBA-UD + SOAPdenovo + GAA released by JGI data releasing policy No Yes t.thomas@unsw.edu.au Torsten Thomas No Host-associated Algae Ectosymbionts Red algae Unclassified Delisea pulchra -33.59 151.13 398192442 1265205 159 66 365 127 0.0 Metagenome 3300001975 *Microbiome Permanent Draft Biogas fermenter microbial communities from the University of Hamburg, Germany Biogas fermenter microbial communities from the University of Hamburg, Germany 3300001975 Metagenome Analysis released by JGI data releasing policy No Yes Guellert S; Wolfgang Streit No Engineered Solid waste Unclassified Landfill Unclassified Biogas fermenter 53.458783 9.968812 629021622 1847799 2356 6 3859 34 0.0 Metagenome 3300040570 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_016-M-20130731-COMP-DNA1 Argonne National Laboratory 3300040570 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 2214058 7119 24 6 61 11 0.0 Metagenome 3300012020 *Microbiome Permanent Draft Activated sludge microbial communities from Shanghai, China Activated sludge microbial communities from Shanghai, China - wastewater treatment plant - Activated sludge Tongji University 3300012020 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified Activated sludge 31.3 121.5 578739142 1277862 248 34 444 64 SRX451093 0.0 Metagenome 3300029314 *Microbiome Permanent Draft Comammox microbial communities from various environments and locations in Europe Activated sludge microbial communities from Sewage Treatment Plant in Aalborg, Denmark - MBR_Gel1 Aalborg University 3300029314 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified Activated sludge 57.049957 9.865377 110368799 156209 48 4 63 6 0.0 Metagenome 3300060651 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Lower Teakettle, Sierra National Forest, California, USA - TEAK_025-M-20210726-comp-1 DOE Joint Genome Institute (JGI) 3300060651 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 36.989997 -119.024514 476651090 872189 324 86 625 109 Unrestricted 19.5 Metagenome 3300024221 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 80D DOE Joint Genome Institute (JGI) 3300024221 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 240001952 468841 154 22 252 31 SRX4474039 Unrestricted 22.98 Metagenome 3300042192 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVT2_Jul25_5_f DOE Joint Genome Institute (JGI) 3300042192 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2552668048 4463823 629 9 1045 14 Unrestricted 12.76 Metagenome 3300006340 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m University of Hawaii 3300006340 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Aphotic zone Marine 22.75 -158.0 835433769 1840501 876 60 1264 100 0.0 Metagenome 3300050331 *Microbiome Permanent Draft Metagenomes from benzene-degrading nitrate-reducing cultures Lab enriched sediment microbial communities from hydrocarbon-contaminated retail site, Toronto, Canada - FeSD_R Genome Quebec 3300050331 Metagenome Analysis Spades v. 3.14.1 Yes Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Engineered Lab enrichment Anaerobic media Defined media Unclassified sediment 43.6535 -79.3839 339894870 542750 108 0 211 0 0.0 Metagenome 3300045194 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_4_C DOE Joint Genome Institute (JGI) 3300045194 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 187094509 220893 114 1 134 2 Unrestricted 102.23 Metagenome 3300037552 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR14_NA29 DOE Joint Genome Institute (JGI) 3300037552 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Crustal Fluids crustal fluids 47.761 -127.7612 165349967 347695 252 3 416 2 SRX9096831 Unrestricted 118.21 Metagenome 3300024901 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 118_HOW13 (SPAdes) DOE Joint Genome Institute (JGI) 3300024901 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 35073564 44090 18 0 28 0 SRX2721195 Unrestricted 0.0 Metagenome 3300032731 *Microbiome Permanent Draft Meromitic Lake A Freshwater microbial communities from meromitic lake A, Ellesmere Island, Canada - Sample 34m Laval University 3300032731 Metagenome Analysis Megahit v. 1.0.5 released by JGI data releasing policy Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 82.99445 -75.443367 1158120416 2430995 575 4 1188 9 0.0 Metagenome 3300044898 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_28CS DOE Joint Genome Institute (JGI) 3300044898 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4324 -106.0309 967592909 1583588 323 60 503 83 SRX20650047 Unrestricted 13.95 Metagenome 3300056878 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E1L_9_10 DOE Joint Genome Institute (JGI) 3300056878 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.997158 -81.489236 1401260881 2289477 619 6 1010 10 Unrestricted 11.16 Metagenome 3300013594 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100595 University of Pennsylvania 3300013594 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 5848814 9072 6 0 4 0 SRX756159 0.0 Metagenome 3300035396 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from Middle Island sinkhole, Lake Huron, Michigan, United States - MIS.2016.152B reassembly DOE Joint Genome Institute (JGI) 3300035396 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes macgregb@umn.edu; sgrim@umich.edu Barbara MacGregor; Sharon Grim No Environmental Aquatic Lake Freshwater Sediment microbial mat 45.1993 -83.3279 284348031 368924 90 11 130 18 SRX7582711 0.0 Metagenome 3300022211 *Microbiome Permanent Draft Aerobic methanotrophic bioreactor microbial communities at MBL, Massachusetts, USA Aerobic methanotrophic bioreactor microbial communities at MBL, Massachusetts USA - Control 1 Individual assembly Marine Biological Laboratory 3300022211 Metagenome Analysis MegaHit v.1.0.6 released by JGI data releasing policy No Yes nuria.fgonzalez@gmail.com Nuria Fernandez Gonzalez No Engineered Bioreactor Unclassified Aerobic Unclassified Bioreactor 41.5265 -70.6731 21820820 26283 9 1 15 3 0.0 Metagenome 3300003397 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM DOE Joint Genome Institute (JGI) 3300003397 Metagenome Analysis revert back to private per Christa Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 15346437 45851 153 2 267 2 SRX2574368 Unrestricted 0.0 Metagenome 3300050280 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_37 DOE Joint Genome Institute (JGI) 3300050280 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -74.179 162.515 532241250 871849 115 20 167 31 SRX18235988 Restricted 31.82 Metagenome 3300000821 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 28JUN2007 epilimnion v5 (version 6) DOE Joint Genome Institute (JGI) 3300000821 Metagenome Analysis released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 1443306 1531 0 0 0 0 Unrestricted 0.0 Metagenome 3300021389 *Microbiome Permanent Draft Coastal seawater microbial communities from Pivers Island, North Carolina, United States Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127 DOE Joint Genome Institute (JGI) 3300021389 Metagenome Analysis spades v. 3.11.1-check Yes Yes dana.hunt@duke.edu Dana Hunt No Environmental Aquatic Coastal Marine Unclassified seawater 34.7181 -76.6707 1450470673 2943044 765 238 1109 408 SRX4010401 Unrestricted 22.96 Metagenome 3300010264 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4571-4 33-36 cm metaG DOE Joint Genome Institute (JGI) 3300010264 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; teske@email.unc.edu Ramunas Stepanauskas; Andreas Teske No Environmental Aquatic Hydrothermal vents Marine Sediment Marine hydrothermal vent 27.0078 -111.4071 13337508 30532 29 1 67 1 SRX2525220 Unrestricted 0.0 Metagenome 3300041701 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_400 MetaG AgResearch, New Zealand, Mosgeil 3300041701 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 867337097 1939439 331 23 1105 54 0.0 Metagenome 3300047456 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mississippi River, Louisiana, USA - NASQAN2016_060 DOE Joint Genome Institute (JGI) 3300047456 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 19874003 51771 53 10 97 10 Unrestricted 113.4 Metagenome 3300012583 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100401 University of Pennsylvania 3300012583 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14209993 32652 31 6 55 13 SRX756256 0.0 Metagenome 3300070597 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_070-M-20180628-COMP-DNA1 Battelle Memorial Institute 3300070597 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 45.824185 -121.955555 5.18-5.62 8604039 27102 47 11 63 18 0.0 Metagenome 3300039177 *Microbiome Finished Marine algae associated bacterial community from Sydney, Australia Marine algae associated bacterial community from Sydney, Australia - Ulva australis_3R4 Ramaciotti Centre for Genomics 3300039177 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes j.nappi@unsw.edu.au Jadranka Nappi No Host-associated Algae Unclassified Unclassified Unclassified Marine -33.990304 151.231529 279549066 387795 37 10 88 11 0.0 Metagenome 3300006623 *Microbiome Permanent Draft Soil microbial communities from the Leymus chinensis steppe, China - nitrogen deposition Soil microbial communities from the Leymus chinensis steppe, China - after adding 5.25 g N m- 2, yr-1 Chengdu Institute of Biology, Chinese Academy of Sciences 3300006623 Metagenome Analysis velvet released per JGI data release policy No Yes ruijp@cib.ac.cn Junpeng Rui No Environmental Terrestrial Unclassified Soil Unclassified soil 43.63 116.7 201751538 924079 407 12 581 48 0.0 Metagenome 3300029521 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI012168-57 Beijing Genomics Institute (BGI) 3300029521 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 182673898 234450 101 0 173 0 0.0 Metagenome 3300018022 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40 DOE Joint Genome Institute (JGI) 3300018022 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 907176821 1628812 465 8 771 11 SRX3960078 Unrestricted 16.48 Metagenome 3300044491 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Estuarine water microbial communities from San Francisco Bay, California, United States - May19_FB_8_27D DOE Joint Genome Institute (JGI) 3300044491 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 37.6183 -122.2916 357682729 605959 200 91 272 126 Unrestricted 84.78 Metagenome 3300001603 *Microbiome Permanent Draft Deep marine sediment microbial communities from the Ulleung Basin, Sea of Japan UBGH2-10 SMTZ 3300001603 Metagenome Analysis released by JGI data releasing policy No Yes trycell@daum.net Jin-Woo Lee No Environmental Aquatic Oceanic Marine Sediment Deep marine sediment 36.92631 130.0665 0 0 0 0 0 0 0.0 Metagenome 3300044988 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater bacterial communities from Lake Mendota, Wisconsin, United States - ME_2020-10-08_15m_Bacteria_A DOE Joint Genome Institute (JGI) 3300044988 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 749900129 1155409 324 66 484 88 Unrestricted 19.15 Metagenome 3300004019 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2 DOE Joint Genome Institute (JGI) 3300004019 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.04565 -121.866287 747725468 2155669 706 5 1509 10 SRX7142147 Unrestricted 0.0 Metagenome 3300056616 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.16W.14 SIP fraction DOE Joint Genome Institute (JGI) 3300056616 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 67430520 136482 42 22 64 32 Unrestricted 11.71 Metagenome 3300038503 *Microbiome Permanent Draft Diffuse flow microbial communities from hydrothermal vent near Loihi Seamount, Hawaii, USA Diffuse flow microbial communities from Kilauea ocean entry site, Hawaii, USA - 119 The Marine Biological Laboratory 3300038503 Metagenome Analysis IDBA-UD v. 1.1.3 released by JGI data releasing policy No Yes asmith@simons-rock.edu Amy Smith No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse Flow 19.42 -155.28 6-7 117432672 153305 78 4 126 5 0.0 Metagenome 3300031727 *Microbiome Permanent Draft Rhizosphere microbial communities from salt marsh grasses in Alabama, United States Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 DOE Joint Genome Institute (JGI) 3300031727 Metagenome Analysis spades v. 3.12.0 Yes Yes omason@fsu.edu Olivia Mason No Host-associated Plants Rhizosphere Roots Unclassified rhizosphere 30.2619 -88.2383 2491696254 5538761 1638 33 2790 48 SRX5821831 Unrestricted 9.92 Metagenome 3300035120 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 DOE Joint Genome Institute (JGI) 3300035120 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1125 -122.987 1062144742 2616666 699 68 1279 91 SRX8289766 Unrestricted 6.65 Metagenome 3300025142 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG11_big_fil_rev_8/21/14_0.20 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025142 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 791621780 1341246 1068 5 1624 19 SRX3348155 Unrestricted 0.0 Metagenome 3300046354 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_145 DOE Joint Genome Institute (JGI) 3300046354 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9703 -106.997 260274891 819687 1259 8 2721 12 Restricted 0.0 Metagenome 3300021367 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2016_3, 0.2 Toyama Prefectural University 3300021367 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Sediment marine 37.36076 137.95754 53183445 144081 25 0 50 2 0.0 Metagenome 3300046721 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 soil DOE Joint Genome Institute (JGI) 3300046721 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121135 -123.269376 5.39 870518823 1431352 303 22 522 38 Unrestricted 13.38 Metagenome 3300071090 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Arizona, USA - SRER_043-M-20190806-COMP-DNA1 3300071090 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 8161520 25661 39 2 60 7 0.0 Metagenome 3300040125 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Barrow Environmental Observatory, Tundra, AK, USA - BARR_006-O-20170807-COMP-DNA1 Battelle Memorial Institute 3300040125 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 71.28241 -156.61936 11405868 25158 25 1 21 4 0.0 Metagenome 3300037278 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_F1 DOE Joint Genome Institute (JGI) 3300037278 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 1206015361 2431217 536 143 909 243 SRX8398189 Unrestricted 8.61 Metagenome 3300014010 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00874 Weill Cornell Medical College 3300014010 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.71 -73.83 15008858 28558 10 0 21 0 SRX822840 0.0 Metagenome 3300024266 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 75D DOE Joint Genome Institute (JGI) 3300024266 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 217843886 536374 185 22 292 38 SRX4473296 Unrestricted 14.35 Metagenome 3300012329 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100673 University of Pennsylvania 3300012329 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14805358 40231 23 0 41 0 SRX756421 0.0 Metagenome 3300013181 *Microbiome Permanent Draft Marine hypoxic microbial communities from the Gulf of Mexico, USA Marine hypoxic microbial communities from the Gulf of Mexico, USA - 9m_Station6_GOM_Metagenome Georgia Institute of Technology 3300013181 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 88551214 223139 87 2 136 5 SRX1012836 0.0 Metagenome 3300017706 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG DOE Joint Genome Institute (JGI) 3300017706 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -29.499 -71.609 185163227 401385 31 4 51 6 SRX7206739 Unrestricted 21.31 Metagenome 3300028707 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148 DOE Joint Genome Institute (JGI) 3300028707 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92045766 -106.94845279 460038470 1201452 355 15 696 28 SRX5354688 Unrestricted 11.12 Metagenome 3300011451 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00893 Weill Cornell Medical College 3300011451 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.75 -73.94 12791040 16231 7 0 16 0 SRX822856 0.0 Metagenome 3300001269 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY87 J. Craig Venter Institute (JCVI) 3300001269 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 1741990476 6508319 280 138 840 253 0.0 Metagenome 3300006987 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from Cariaco Basin, Caribbean Sea - 24_WHOI_OMZ DOE Joint Genome Institute (JGI) 3300006987 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 10.847 -65.114 78994322 154589 110 0 155 0 SRX7410045 Unrestricted 0.0 Metagenome 3300022336 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL3WBGP3 JM9 AGRF 3300022336 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996531 115.533257 28619028 55394 27 2 47 4 0.0 Metagenome 3300002320 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP03-I4 3300002320 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300049703 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control DOE Joint Genome Institute (JGI) 3300049703 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 59067487 140194 222 8 433 21 Unrestricted 9.22 Metagenome 3300045581 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Wabash River, Indiana, USA - NASQAN2011_332 DOE Joint Genome Institute (JGI) 3300045581 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.1308 -87.9414 758168407 1794567 724 262 1174 491 Unrestricted 0.0 Metagenome 3300025791 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025791 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.05246563 -121.76914021 199747396 383863 212 0 340 1 SRX7142763 Unrestricted 0.0 Metagenome 3300011260 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_3, permeate Toyama Prefectural University 3300011260 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Unclassified marine 37.1316 137.71844 187276940 417805 106 3 174 6 0.0 Metagenome 3300028156 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_50m DOE Joint Genome Institute (JGI) 3300028156 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 317312061 610338 374 0 603 0 SRX5244770 Unrestricted 15.31 Metagenome 3300006969 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Bulk soil microbial communities from a Populus tree surrounding site in Tennessee, USA - Soil MetaG P. deltoides SBSDD3 DOE Joint Genome Institute (JGI) 3300006969 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes pelletierda@ornl.gov Dale Pelletier No Environmental Terrestrial Tree plantation Soil Unclassified Bulk soil 35.8443 -83.9607 1993281614 4149201 935 35 1678 49 SRX2840430 Unrestricted 0.0 Metagenome 3300037294 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Vereteno Lake #28 DOE Joint Genome Institute (JGI) 3300037294 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5157 78.4429 289790340 456043 168 9 214 20 SRX9173460 Unrestricted 45.93 Metagenome 3300027205 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027205 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2327 -123.9168 125483804 293581 171 22 265 37 SRX2753611 Unrestricted 0.0 Metagenome 3300037473 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Soil microbial communities from Duke University greenhouse, North Carolina, United States - YS_C_2 wSuillus Control DOE Joint Genome Institute (JGI) 3300037473 Metagenome Analysis metaspades v. 3.13.0 Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Greenhouse Soil Unclassified soil 36.0 -78.0 1463801553 2589113 728 81 1309 123 SRX9172598 Unrestricted 14.04 Metagenome 3300013252 *Microbiome Permanent Draft Marine hypoxic microbial communities from the Gulf of Mexico, USA Marine hypoxic microbial communities from the Gulf of Mexico, USA - 11m_Station6_GOM_Metagenome Georgia Institute of Technology 3300013252 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 90044609 216695 97 5 142 6 SRX1012840 0.0 Metagenome 3300014765 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01344 Weill Cornell Medical College 3300014765 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.85 -73.82 20258468 33517 14 0 14 0 SRX823284 0.0 Metagenome 3300000675 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 54 DOE Joint Genome Institute (JGI) 3300000675 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 5118095 16726 27 0 49 0 SRX4340980 Unrestricted 0.0 Metagenome 3300027925 *Microbiome Permanent Draft Deep subsurface rock core microbial communities from Deccan traps, Ukhalu, Maharashtra, India Deep subsurface rock core microbial communities from Deccan traps, Ukhalu, Maharashtra, India - U11_55 trimmed_55_20 Marine Biological Laboratory 3300027925 Metagenome Analysis Spades v. 3.11.1 released by JGI data releasing policy No Yes avishekdutta14@gmail.com Avishek Dutta No Environmental Terrestrial Rock Deep subsurface Unclassified Deep subsurface rock core 17.125867 73.869133 902671515 2060435 200 40 475 84 0.0 Metagenome 7000000499 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 764669880 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000499 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 57654544 109588 0 0 0 0 0.0 Metagenome 3300027490 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027490 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37229149 -119.2718121 238685208 576145 196 5 379 10 SRX2523203 Unrestricted 0.0 Metagenome 3300006049 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Bulk soil microbial communities from a Populus tree surrounding site in Tennessee, USA - Soil MetaG P. deltoides SBSDD1 DOE Joint Genome Institute (JGI) 3300006049 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Environmental Terrestrial Tree plantation Soil Unclassified Bulk soil 35.8443 -83.9607 2091383226 6707914 1235 33 2206 56 SRX2776983, SRX2776982 Unrestricted 0.0 Metagenome 3300070770 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_027-O-20180717-COMP-DNA1 3300070770 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 16944605 54795 61 7 126 6 0.0 Metagenome 3300014718 *Microbiome Permanent Draft Laboratory enrichment broth microbial communities from Maryland, USA Laboratory enrichment broth microbial communities from Maryland, USA - TT2 U.S. Food and Drug Administration (FDA) 3300014718 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Lab enrichment Unclassified Defined media Unclassified Laboratory enrichment broth 7696868 11263 6 0 16 0 0.0 Metagenome 3300009601 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_38 DOE Joint Genome Institute (JGI) 3300009601 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -61.27 -43.92 121744885 240982 113 0 169 0 SRX4924297 Unrestricted 0.0 Metagenome 3300014272 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1 DOE Joint Genome Institute (JGI) 3300014272 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jzz0026@lbl.gov; sgtringe@lbl.gov Jinglie Zhou; Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.049904 -121.765358 539452743 1207748 415 1 748 5 SRX7182422 Unrestricted 0.0 Metagenome 3300013849 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01517 Weill Cornell Medical College 3300013849 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.99 7771484 11568 11 0 12 0 SRX823393 0.0 Metagenome 3300023299 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1504 DOE Joint Genome Institute (JGI) 3300023299 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 217304898 444761 208 2 334 5 SRX4397538 Unrestricted 13.2 Metagenome 3300009997 *Microbiome Finished Microbiology of confined controlled built environments Cleanroom floor microbial communities from spacecraft assembly cleanroom facility in Turin, Italy - cleanroom CR8 Eurofins MWG Operon 3300009997 Metagenome Analysis Ray Meta released per JGI data release policy No Yes alexander.mahnert@gmail.com Alexander Mahnert No Engineered Built environment Unclassified House Unclassified built environment 45.079675 7.608334 27454988 32408 13 9 15 10 0.0 Metagenome 3300001287 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 23JUL2008 deep hole epilimnion v3 DOE Joint Genome Institute (JGI) 3300001287 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 9047866 18038 28 4 30 9 SRX3310952 Unrestricted 0.0 Metagenome 3300022813 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY15 Version 2 University of New South Wales 3300022813 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 44908541 70906 36 0 61 1 0.0 Metagenome 3300026124 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_H2O_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026124 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Pond water 37.4961 -122.1331 214123628 418439 110 2 166 3 SRX2523451 Unrestricted 0.0 Metagenome 3300000223 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P4 10m DOE Joint Genome Institute (JGI) 3300000223 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Photic zone Marine 48.65 -126.666667 57249694 161833 153 56 279 89 Unrestricted 0.0 Metagenome 2166559014 *Microbiome Permanent Draft Microbial communities from the Atlantic Ocean and human feces from France, grouped together for a comparative study Marine microbial communities from the Atlantic Ocean, for comparison studies - Ocean2 (mb2000jd298_1 3713) 454 Life Sciences 2166559014 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Aquatic Oceanic Marine Unclassified Environmental and host-associated 39.0042816 -77.1012173 50265065 83842 152 3 323 10 0.0 Metagenome 3300025508 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025508 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 252671311 547788 80 15 139 23 SRX2854477 Unrestricted 0.0 Metagenome 3300014086 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00900 Weill Cornell Medical College 3300014086 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.74 -73.91 16868703 30541 13 0 17 0 SRX822863 0.0 Metagenome 3300006897 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 508703490 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006897 Metagenome Analysis SPADES 3.7.0 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 24181924 43292 14 0 34 0 0.0 Metagenome 3300020569 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 22AUG2011 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020569 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 130254927 280464 121 11 182 20 SRX1989654 Unrestricted 0.0 Metagenome 3300042741 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T2_23-Sept-14 NMDC pilot DOE Joint Genome Institute (JGI) 3300042741 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 83494641 207558 221 89 390 124 SRX2838895 0.0 Metagenome 3300013097 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ859 (21.06) DOE Joint Genome Institute (JGI) 3300013097 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.0749 163.892 698924244 1463554 563 87 929 158 SRX3008019 Unrestricted 7.04 Metagenome 3300019860 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Sao Paulo, Brazil - ZCM2 Center for Advanced Technologies in Genomics, Sao Paulo University 3300019860 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Engineered Solid waste Composting Zoo waste Unclassified compost -23.651072 -46.620675 67904491 144739 66 1 115 3 0.0 Metagenome 3300041574 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_489 MetaG AgResearch, New Zealand, Mosgeil 3300041574 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 698214932 1167651 133 32 489 72 0.0 Metagenome 3300020355 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000676 (ERX556077-ERR598988) CEA Genoscope 3300020355 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -9.067 -140.6346 376732279 927974 466 2 738 15 0.0 Metagenome 3300046766 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mississippi River, Louisiana, USA - NASQAN2011_194 DOE Joint Genome Institute (JGI) 3300046766 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 30.7585 -91.3959 7982204 27722 54 8 59 8 Unrestricted 0.0 Metagenome 3300000903 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1 DOE Joint Genome Institute (JGI) 3300000903 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 15360111 48915 161 79 243 126 SRX1985893, SRX1985892 Unrestricted 0.0 Metagenome 3300042953 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-446 Genome Quebec 3300042953 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 52.91311 -107.879068 1328773729 3196412 432 78 736 118 0.0 Metagenome 3300016664 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water catchment in Singapore - WC_Site 2c, Oct Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016664 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 1.35 103.87 80034673 105992 17 5 24 5 0.0 Metagenome 3300056680 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.3W.13 SIP fraction DOE Joint Genome Institute (JGI) 3300056680 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 127929361 210415 90 17 118 17 Unrestricted 13.52 Metagenome 3300021080 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo DOE Joint Genome Institute (JGI) 3300021080 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified groundwater sediment 38.9195 -106.9496 .6 1021969923 2425914 652 19 1244 47 SRX4020904 Unrestricted 19.48 Metagenome 3300011858 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00233 Weill Cornell Medical College 3300011858 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.84 -73.94 38367894 70121 29 2 37 0 SRX822212 0.0 Metagenome 3300002196 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC3b day 99 University of Sao Paulo, Virginia Bioinformatics Institute 3300002196 Metagenome Analysis SoapDeNovo released per PI's request No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 103781231 285550 5 3 30 8 0.0 Metagenome 3300000866 *Microbiome Permanent Draft Hot springs sediment microbial communities from Tengchong, China, analyzing PIRE metagenomes Hot spring sediment from Jinze in Tengchong, China Stanford University 3300000866 Metagenome Analysis released per Supratim Yes Yes brian.hedlund@unlv.edu, brian.hedlund@unlv.edu; eaeloefadrosh@lbl.gov Brian P. Hedlund, Brian Hedlund; Emiley Eloe-Fadrosh No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot springs sediment 25.44138 98.46004 6.71 94676878 136697 58 0 83 1 0.0 Metagenome 3300013578 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100525 University of Pennsylvania 3300013578 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 2015535 5823 9 3 21 6 SRX756229 0.0 Metagenome 3300014319 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleA_D1 DOE Joint Genome Institute (JGI) 3300014319 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.224476 -122.019341 396978195 946107 448 3 782 11 SRX7188132 Unrestricted 0.0 Metagenome 3300056894 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E2L_18_20 DOE Joint Genome Institute (JGI) 3300056894 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9934494 -81.4907807 784198114 1313650 395 7 663 8 Unrestricted 13.2 Metagenome 3300009887 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA7 University of New South Wales 3300009887 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au; z5119396@unsw.edu.au Holly Bennett; Viet Hung Nguyen No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 38144961 57187 36 6 56 6 0.0 Metagenome 3300002643 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes from Oil sands tailings Tailings Pond 5 - 2012TP5 McGill University 3300002643 Metagenome Analysis released per JGI data release policy No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey No Engineered Built environment Petrochemical Tailings pond Wastewater Hydrocarbon resource environments 57.02 -111.55 7.5 12013011 16754 20 0 28 0 0.0 Metagenome 3300053779 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S29_A_D45 hydrophobic DOE Joint Genome Institute (JGI) 3300053779 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 331079696 484240 155 4 193 10 Restricted 0.0 Metagenome 3300045178 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_3_F DOE Joint Genome Institute (JGI) 3300045178 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 158934642 192852 99 2 132 1 Unrestricted 99.68 Metagenome 3300014558 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS44_24 University of Hohenheim 3300014558 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 112435114 170895 75 3 117 5 0.0 Metagenome 3300043429 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from East River, Crested Butte, Colorado, USA - eastriver_2019_sw_WHONDRS-S19S_0100 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043429 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9223 -106.9514 543914610 888693 365 120 598 174 Unrestricted 19.44 Metagenome 3300040797 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Salins du Lion, Vitrolles, France - D327 Genopole Toulouse Midi-Pyrenees 3300040797 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.45 5.2264 436281296 842283 407 15 731 29 0.0 Metagenome 3300008403 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764042746 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008403 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 85103634 131421 71 0 96 0 0.0 Metagenome 3300059690 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2020-0048 DOE Joint Genome Institute (JGI) 3300059690 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.82726 -83.19041 2401914859 5359229 852 755 1372 1077 Unrestricted 0.0 Metagenome 3300029566 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P040V6 Beijing Genomics Institute (BGI) 3300029566 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 180811321 236866 163 0 234 0 0.0 Metagenome 3300050216 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Leeds, Wisconsin, USA - 33_781_WI_DR_1m_c3_T1_16O DOE Joint Genome Institute (JGI) 3300050216 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 43.30485 -89.3309 1104957342 1733588 359 13 543 21 Restricted 13.18 Metagenome 3300028071 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Atlam_RepA_8d DOE Joint Genome Institute (JGI) 3300028071 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 132265979 279140 161 15 221 30 SRX5245453 Unrestricted 13.4 Metagenome 3300013162 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100464 University of Pennsylvania 3300013162 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 26739926 56358 21 0 37 2 SRX756534 0.0 Metagenome 3300002312 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP06-I4 3300002312 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300043506 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-380 Genome Quebec 3300043506 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 55.061409 -114.016738 899468653 2012324 416 57 637 122 0.0 Metagenome 3300027191 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG S.737 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027191 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 147343491 348553 220 60 307 110 SRX2753578 Unrestricted 0.0 Metagenome 7000000644 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764062976 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000644 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 23033807 42667 0 0 0 0 0.0 Metagenome 3300005314 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila putrida female 2 gut Cornell University 3300005314 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy No Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila putrida female adult gut 43.025606 -77.572811 125898560 256139 48 4 83 3 0.0 Metagenome 3300041036 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - T3D9 IDBA-UD 60x Baseclear 3300041036 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 133223602 185953 169 9 235 13 0.0 Metagenome 3300003467 *Microbiome Permanent Draft Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil, in a copper mine Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P2 sample University of Campinas 3300003467 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes danba.castro@gmail.com Daniel Castro No Environmental Terrestrial Unclassified Soil Mine drainage Ore pile and mine drainage contaminated soil -6.426389 -50.051389 302503132 441436 125 2 234 3 0.0 Metagenome 3300045562 *Microbiome Draft Lake microbial communities from Canada Lake sediment microbial communities from the Prairies ecozone, Canada - Lake 10-364 Genome Quebec 3300045562 Metagenome Analysis MEGAHIT v1.0.6 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Lake Sediment 50.392956 -109.488101 210299942 287210 114 21 194 30 0.0 Metagenome 3300045870 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from the Washburn Area, Yellowstone National Park, WY, United States - MSUNE_WB_02 University of Wisconsin, Madison 3300045870 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.76694 -110.42964 92366582 200417 38 5 60 1 0.0 Metagenome 3300010373 *Microbiome Permanent Draft Terrestrial soil microbial communities with and without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4 DOE Joint Genome Institute (JGI) 3300010373 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tiedjej@msu.edu James Tiedje No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 42.3938 -85.3708 5032435539 10499380 3180 301 5202 545 SRX3295630 Unrestricted 0.0 Metagenome 2209111021 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - FP3 (Mercury 0.2g/kg) assembled 454 Life Sciences 2209111021 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.804241 -0.372114 15047269 20386 3 0 7 0 0.0 Metagenome 3300042564 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Jun2018-rr0160 DOE Joint Genome Institute (JGI) 3300042564 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1246236689 1866255 296 56 412 71 Unrestricted 25.82 Metagenome 3300003489 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_1000_plan DOE Joint Genome Institute (JGI) 3300003489 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 387562729 671655 160 58 238 68 SRX2867530, SRX2867531 Unrestricted 0.0 Metagenome 3300001159 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 DOE Joint Genome Institute (JGI) 3300001159 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 30914022 96952 114 12 172 17 SRX3312717 Unrestricted 0.0 Metagenome 3300021497 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BRT_0-1_MG DOE Joint Genome Institute (JGI) 3300021497 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 124893804 308094 187 13 413 18 SRX3982371 Unrestricted 8.36 Metagenome 3300070228 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_038-M-20190717-COMP-DNA1 3300070228 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 1790545 5918 19 2 32 2 0.0 Metagenome 3300028823 *Microbiome Permanent Draft Seawater microbial communities from Yap Trench, western Pacific Ocean Seawater microbial communities from Yap Trench, western Pacific Ocean - 37I-Yap-CTD02-125m 2000bp_Newsun Novogene 3300028823 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes newsun1987@126.com Xinxu Zhang No Environmental Aquatic Ocean trench Marine Unclassified seawater 9.87 138.5 666140199 767315 267 0 301 0 0.0 Metagenome 3300042231 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D222_1 DOE Joint Genome Institute (JGI) 3300042231 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 165760458 230307 128 10 162 12 Unrestricted 78.17 Metagenome 3300007280 *Microbiome Permanent Draft Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia - TJ18 time point Australian Centre for Ecogenomics 3300007280 Metagenome Analysis CLC released per JGI data release policy No Yes crinke@lbl.gov Christian Rinke No Environmental Aquatic Coastal Marine Unclassified marine surface water -34.1192 151.2267 136164443 184245 25 0 16 0 0.0 Metagenome 3300043445 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Sycamore Creek, Mesa, Arizona, USA - sycamorecreek_2019_sw_WHONDRS-S19S_0028 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043445 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 33.7508 -111.5081 465678601 772357 563 180 855 276 Unrestricted 22.44 Metagenome 3300013480 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00882 Weill Cornell Medical College 3300013480 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -73.82 4291514 4799 3 0 5 0 SRX822847 0.0 Metagenome 3300011150 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00459 Weill Cornell Medical College 3300011150 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.69 -73.99 23861869 29257 17 0 23 0 SRX822428 0.0 Metagenome 3300017814 *Microbiome Permanent Draft Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA - Biofuel metagenome 4 (v2) (version 3) DOE Joint Genome Institute (JGI) 3300017814 Metagenome Analysis released based on JGI ITS Yes Yes hrbeller@lbl.gov Harry Beller Yes 27506494, 29556105 Engineered Bioreactor Unclassified Anaerobic Unclassified Bioreactor 37.8754404 -122.2477251 239304970 222543 110 0 102 0 SRX1671042, SRX1671041, SRX1671040, SRX1671039, SRX1671038, SRX1671037 Unrestricted 0.0 Metagenome 3300047379 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_170705.NP2 DOE Joint Genome Institute (JGI) 3300047379 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 688142887 1397032 386 45 555 70 Unrestricted 12.86 Metagenome 3300049827 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Oregon, USA - umpqua_2019_sed_WHONDRS-S19S_0079 DOE Joint Genome Institute (JGI) 3300049827 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 43.6369 -123.5721 632685123 1457501 782 19 1424 24 Unrestricted 13.33 Metagenome 3300023176 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (version 2) DOE Joint Genome Institute (JGI) 3300023176 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1216367297 2395571 470 65 708 92 SRX4074032 Unrestricted 23.44 Metagenome 3300070908 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_084-M-20190830-COMP-DNA1 3300070908 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 6121245 20463 41 5 73 9 0.0 Metagenome 3300031921 *Microbiome Permanent Draft Microbial communities from the deep biosphere Marine sediment microbial communities from the Haakon Mosby mud volcano in the Barents Sea, Arctic Ocean - PS64_373_1_GC re-assembly The Marine Biological Laboratory 3300031921 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Mud volcano Marine Sediment Sediment 72.003 14.726 78968785 197131 75 1 126 1 SRX993396, SRX550018, SRX550002 0.0 Metagenome 3300042380 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME31Aug2018-rr0841 DOE Joint Genome Institute (JGI) 3300042380 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 923626691 1455598 447 109 581 166 Unrestricted 15.71 Metagenome 3300070335 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_044-M-20200806-COMP-DNA1 3300070335 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 5836126 19126 31 3 69 4 0.0 Metagenome 3300005521 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV255 DOE Joint Genome Institute (JGI) 3300005521 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 663069425 1728945 698 14 1088 24 SRX2782417 Unrestricted 0.0 Metagenome 3300027087 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF017 (SPAdes) DOE Joint Genome Institute (JGI) 3300027087 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 12254333 38361 39 9 62 11 SRX2014336 Unrestricted 0.0 Metagenome 3300018086 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG DOE Joint Genome Institute (JGI) 3300018086 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 4.0627 -73.195 2235592144 4574948 1399 13 2389 27 SRX3936785 Unrestricted 6.37 Metagenome 3300012270 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla E10 #628 DOE Joint Genome Institute (JGI) 3300012270 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 269022148 526041 277 28 472 50 SRX3296547 Unrestricted 0.0 Metagenome 3300001005 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1117 DOE Joint Genome Institute (JGI) 3300001005 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 138790 485 11 1 20 2 SRX1987162 Unrestricted 0.0 Metagenome 3300003535 *Microbiome Permanent Draft Petroleum reservoir microbial communities from Reconcavo Basin, Brazil, analyzing oil degradation Petroleum reservoir microbial communities from Reconcavo Basin, Brazil, analyzing oil degradation - Bahia-well BA- 1 3300003535 Metagenome Analysis de novo assembly with CLC genomics released by JGI data releasing policy No Yes inatalia.sierra@gmail.com Isabel Natalia Sierra Garcia No Environmental Terrestrial Oil Oil reservoir Unclassified Petroleum reservoir -12.2 -38.11 88315047 175116 37 0 96 2 0.0 Metagenome 3300069316 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_009-M-20170829-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069316 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 16388640 49818 44 4 69 7 0.0 Metagenome 3300012345 *Microbiome Permanent Draft Freshwater microbial communities from rivers and streams along an organic matter gradient associated with agriculture in Ontario, Canada Freshwater microbial communities from Burnt River, Ontario, Canada - S22 Molecular Research LP (MR DNA) 3300012345 Metagenome Analysis metaSPAdes released by JGI data releasing policy No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lotic Freshwater Unclassified Freshwater 44.74057 -78.6591 8.37 142521521 540624 38 13 100 26 0.0 Metagenome 3300001793 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR11Aug_CSWold DOE Joint Genome Institute (JGI) 3300001793 Metagenome Analysis Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 69308847 127969 58 0 112 0 SRX3320867 Unrestricted 0.0 Metagenome 3300002279 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 29APR2009 deep hole epilimnion ns DOE Joint Genome Institute (JGI) 3300002279 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 66756289 166027 128 47 257 79 SRX1987726 Unrestricted 0.0 Metagenome 3300039136 *Microbiome Permanent Draft Sediment and seawater microbial communities from hydrothermal vent in Taiwan, China Seawater microbial communities from hydrothermal vent in Taiwan, China - Y4 Xiamen university 3300039136 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Coastal Marine Unclassified Seawater 24.83478 121.96208 96802060 175944 110 4 154 4 0.0 Metagenome 3300023051 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung F1 DOE Joint Genome Institute (JGI) 3300023051 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Elk feces 38.04 -122.5 125592333 305680 403 11 734 17 SRX4415393 Unrestricted 8.03 Metagenome 3300013825 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01222 Weill Cornell Medical College 3300013825 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.87 -73.87 20039493 34852 16 0 25 0 SRX823177 0.0 Metagenome 3300009142 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1550B-3 DOE Joint Genome Institute (JGI) 3300009142 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2328 -123.878 258101952 511186 403 169 643 279 SRX2753722 Unrestricted 4.93 Metagenome 3300043117 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B6.7_Sample6.Rodeo7.Well1132 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043117 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 244796362 438729 243 0 378 0 SRX8356264 Unrestricted 35.93 Metagenome 3300048874 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - Maria356 DOE Joint Genome Institute (JGI) 3300048874 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Sand Soil Desert sand -78.0662 164.2441 42727566 103776 63 0 133 0 Unrestricted 0.0 Metagenome 3300006025 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA DOE Joint Genome Institute (JGI) 3300006025 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 569322078 1509394 416 22 678 48 SRX2858390, SRX6754041 Unrestricted 0.0 Metagenome 3300027949 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S2_40_50 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027949 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228379 -119.2717467 159684176 446118 242 4 409 7 SRX2523285 Unrestricted 0.0 Metagenome 3300049334 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC19 DOE Joint Genome Institute (JGI) 3300049334 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 118691923 301219 350 12 791 31 Unrestricted 15.29 Metagenome 2140918015 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in Juan de Fuca Ridge, Pacific Ocean Marine microbial communities from hydrothermal vents in Juan de Fuca Ridge - 2A5 Middle Chimney Duke University 2140918015 Metagenome Analysis released per JGI data release policy No Yes kfrank@mcb.harvard.edu Kiana Frank No Environmental Aquatic Hydrothermal vents Marine Unclassified Marine 47.9237593 -129.1090043 279430833 842566 124 1 475 0 0.0 Metagenome 3300033402 *Microbiome Permanent Draft Lab enriched peat soil microbial communities from two peatlands near Ithaca, NY, United States Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN DOE Joint Genome Institute (JGI) 3300033402 Metagenome Analysis spades v. 3.13.0 Yes Yes rer26@cornell.edu Ruth Richardson No Environmental Terrestrial Wetlands Soil Peat peat soil 42.5488 -76.2662 2905885511 4605797 982 16 1480 19 SRX6469110 Unrestricted 21.59 Metagenome 3300032006 *Microbiome Permanent Draft Comprehensive metagenome and single cell genome sequencing from the open ocean community of North Pacfic Subtropical Gyre, Station ALOHA Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG DOE Joint Genome Institute (JGI) 3300032006 Metagenome Analysis spades v. 3.13.0 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Unclassified Seawater 22.7656 -158.2256 3238432838 7127816 1802 489 2855 901 SRX5781910 Unrestricted 10.93 Metagenome 7000000060 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 338793263 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000060 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 5560522 8964 0 0 0 0 0.0 Metagenome 3300027069 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF002 (SPAdes) DOE Joint Genome Institute (JGI) 3300027069 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 104419453 278237 71 4 115 6 SRX2014338 Unrestricted 0.0 Metagenome 3300036901 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 P1 10-14 DOE Joint Genome Institute (JGI) 3300036901 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0471 744733167 1359256 275 13 512 28 SRX8138479 Unrestricted 9.8 Metagenome 2124908028 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3 v2 DOE Joint Genome Institute (JGI) 2124908028 Metagenome Analysis Velvet released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 91941688 138074 56 2 90 0 Unrestricted 0.0 Metagenome 3300041691 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_442 MetaG AgResearch, New Zealand, Mosgeil 3300041691 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1154873350 2550440 335 42 1211 70 0.0 Metagenome 3300039203 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A20_65cm_0.25M University of Tennessee 3300039203 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 570299406 1174469 276 4 565 4 SRX710570 0.0 Metagenome 3300053035 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - ATCcR3D-14 DOE Joint Genome Institute (JGI) 3300053035 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 674151985 1158686 465 21 694 42 Unrestricted 0.0 Metagenome 3300046683 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere DOE Joint Genome Institute (JGI) 3300046683 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1216 -123.2716 1133414888 1938411 394 40 722 50 Unrestricted 12.78 Metagenome 3300009791 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3819_2500 DOE Joint Genome Institute (JGI) 3300009791 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic 9.7046 -55.3027 79978687 149160 101 4 145 11 SRX2524285 Unrestricted 0.0 Metagenome 3300013416 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100155 University of Pennsylvania 3300013416 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 101071 386 4 0 3 0 SRX756377 0.0 Metagenome 3300069231 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_004-O-20210805-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069231 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tundra Soil Unclassified Terrestrial soil 68.616768 -149.629355 3712371654 7327615 1046 258 1808 416 0.0 Metagenome 3300012012 *Microbiome Permanent Draft Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m Molecular Research LP (MR DNA) 3300012012 Metagenome Analysis metaSPAdes released by JGI data releasing policy No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.581667 -79.9225 8.2 314542936 931810 85 10 191 21 0.0 Metagenome 3300034124 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14 DOE Joint Genome Institute (JGI) 3300034124 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9123 -147.839 716228909 1744405 403 45 715 75 SRX7633785 Unrestricted 6.63 Metagenome 3300029475 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001852-102 Beijing Genomics Institute (BGI) 3300029475 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 147566792 179114 102 0 165 0 0.0 Metagenome 3300013671 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01124 Weill Cornell Medical College 3300013671 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.91 11877589 21907 8 0 19 0 SRX823079 0.0 Metagenome 3300039344 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 201_M Beijing Genomics Institute (BGI) 3300039344 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 136079650 201514 119 4 238 5 ERX490998 0.0 Metagenome 3300030052 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N3_3 DOE Joint Genome Institute (JGI) 3300030052 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 480963882 1293734 529 30 952 66 SRX5355857 Unrestricted 9.94 Metagenome 3300000073 *Microbiome Permanent Draft Freshwater microbial plankton communities from Lake Konstanz, Germany Freshwater microbial plankton communities from Lake Konstanz, Germany, sample GS697_3.0 um size class J. Craig Venter Institute (JCVI) 3300000073 Metagenome Analysis released per JGI data release policy No Yes david.schleheck@uni-konstanz.de David Schleheck No Environmental Aquatic Lentic Freshwater Epilimnion Freshwater 47.451381 9.073833 0 0 0 0 0 0 0.0 Metagenome 3300033567 *Microbiome Permanent Draft Columbia Riverbed POM Degredation Experiment Sediment microbial communities from the Columbia River near Richland, WA, USA - CRB_Inoculum University of Wisconsin, Madison 3300033567 Metagenome Analysis Metaspades v. 3.13.0 released by JGI data releasing policy Yes Yes nstern2@wisc.edu Noah Stern No Environmental Aquatic Sediment Freshwater Unclassified Sediment 46.28045 -119.27368 551510889 1300511 282 73 473 120 0.0 Metagenome 3300020401 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139) CEA Genoscope 3300020401 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -17.2387 53.9775 1010310337 2545061 388 18 549 31 0.0 Metagenome 3300049146 *Microbiome Permanent Draft Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama - S056_CH17_fluctuating_T0 DOE Joint Genome Institute (JGI) 3300049146 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes njbouskill@lbl.gov Nicholas Bouskill No Environmental Terrestrial Tropical forest Soil Bulk soil Soil 9.17936 -79.8296 523569073 1354002 281 6 521 6 Unrestricted 7.81 Metagenome 3300055021 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_28-s55 day 91 DOE Joint Genome Institute (JGI) 3300055021 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1169004135 1610002 124 119 159 130 Unrestricted 36.31 Metagenome 3300014651 *Microbiome Permanent Draft Human fecal microbial commmunities from Fecal Microbiota Transplantation (FMT) for ulcerative colitis - University of Washington Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P271T3 University of Washington 3300014651 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26288277 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 21911769 46051 19 0 47 1 SRX1131745 0.0 Metagenome 3300006781 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_11_19 DOE Joint Genome Institute (JGI) 3300006781 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 13409114 37914 65 0 176 1 SRX2924863 Unrestricted 0.0 Metagenome 3300040149 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - NIWO_004-O-20160828-COMP-DNA1 Battelle Memorial Institute 3300040149 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.05425 -105.58237 9814573 29212 47 15 91 26 0.0 Metagenome 3300022377 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Xylan, Gen0, Rep 2 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022377 Metagenome Analysis spades v. 3.11.1-check Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4148 -119.8405 113937026 178550 309 3 466 6 SRX3963295 Unrestricted 247.14 Metagenome 3300011938 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00593 Weill Cornell Medical College 3300011938 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -74.0 19664082 33296 13 0 22 0 SRX822560 0.0 Metagenome 7000000715 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 763961826 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000715 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 98941511 144644 0 0 0 0 0.0 Metagenome 3300028221 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Site 232 with 0.8UM filter - spades J. Craig Venter Institute 3300028221 Metagenome Analysis Spades v. 3.11.1 Released per Simon Roux. Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater -68.4 78.18278 8.85 27952213 54563 19 2 23 2 0.0 Metagenome 3300004208 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG11_big_fil_rev_8/21/14_0.20 DOE Joint Genome Institute (JGI) 3300004208 Metagenome Analysis MEGAHIT v. 0.2.0 revert back to private per Christa Yes Yes jbanfield@berkeley.edu, jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield, Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 1292564548 3009369 3015 17 5199 57 SRX3348155 Unrestricted 0.0 Metagenome 3300000185 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011 McGill University 3300000185 Metagenome Analysis No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 57.02 -111.55 14461339 24520 18 0 45 1 0.0 Metagenome 3300025601 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025601 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 374845559 641099 116 19 176 27 SRX2746612 Unrestricted 0.0 Metagenome 3300025997 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-06 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025997 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 325146269 597827 333 22 510 30 SRX3197879 Unrestricted 0.0 Metagenome 3300042833 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181 NMDC pilot DOE Joint Genome Institute (JGI) 3300042833 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92029772 -106.94875926 1074155930 2915468 780 29 1536 45 SRX5354715 0.0 Metagenome 2058419001 *Microbiome Permanent Draft Saline water microbial communities from Great Salt Lake, Utah Saline water microbial communities from Great Salt Lake, Utah, sample from South Arm Antelope Island 1 DOE Joint Genome Institute (JGI) 2058419001 Metagenome Analysis Newbler released based on JGI ITS No Yes bcweimer@ucdavis.edu Bart Weimer, Bart C. Weimer No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline water 41.454358 -112.666397 67538519 173719 35 0 81 0 Unrestricted 0.0 Metagenome 3300048898 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Soil microbial communities from greenhouse in W.K. Kellogg Biological Station, Michigan, USA - KLW soil_4b N15 DOE Joint Genome Institute (JGI) 3300048898 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Environmental Terrestrial Unclassified Soil Unclassified Soil 42.40581 -85.40228 1725230043 2859845 630 16 1038 35 Unrestricted 13.24 Metagenome 3300069564 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_043-M-20160808-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069564 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 24946318 73590 64 4 139 4 0.0 Metagenome 3300027584 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Olavius algarvensis symbiont microbial communities from Tuscany, Italy - Type G ELBA extract 3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027584 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 42.8072 10.1411 677659697 772451 9 3 13 1 SRX2554382 Unrestricted 0.0 Metagenome 3300061106 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIF5SW no PMA treatment Jet Propulsion Laboratory, California Institute of Technology 3300061106 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 29.5517 -95.0985 10880103 10731 19 2 23 6 SRX3808542, SRX2249357, SRX2249354, SRX3808515 0.0 Metagenome 3300040991 *Microbiome Permanent Draft Freshwater lake viral communities from Lake Michigan, near Chicago, USA Freshwater lake viral communities from Lake Michigan, near Chicago, USA - Lake Michigan 57th St 5-Jun-13 Genewiz Inc., Loyola University 3300040991 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.79 -87.57 30449649 47371 23 1 46 2 0.0 Metagenome 3300002965 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic Ocean affecting the dissolved organic carbon pool Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - NADW_A/KNORR_S2/LV DOE Joint Genome Institute (JGI) 3300002965 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -37.9728 -44.9905 204240100 437731 240 28 412 54 SRX2566788 Unrestricted 0.0 Metagenome 3300040488 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Barrow Environmental Observatory, Tundra, AK, USA - BARR_053-O-20170808-COMP-DNA1 Battelle Memorial Institute 3300040488 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 71.28241 -156.61936 3753561 11196 28 2 47 0 0.0 Metagenome 3300040607 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Woodworth, Northern Plains, ND, USA - WOOD_003-M-20140507-COMP-DNA1 Argonne National Laboratory 3300040607 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12823 -99.24136 1654796 5084 34 1 55 3 ERX2134033 0.0 Metagenome 3300025869 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025869 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 906396547 1775026 428 85 691 131 SRX2999739 Unrestricted 0.0 Metagenome 3300059700 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG S.751 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059700 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 128702086 313123 204 53 337 82 SRX2753581 Unrestricted 0.0 Metagenome 3300035421 *Microbiome Permanent Draft Mouse fecal microbial communities from various locations Fecal microbial communities from mouse strain C57/BL6 in China - MH-6-1 Beijing Genomics Institute (BGI) 3300035421 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 22.5537717 114.0871167 133462779 199560 258 0 353 5 0.0 Metagenome 3300032241 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime Ecozone, Canada - Lake 07-021 Genome Quebec 3300032241 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.635064 -65.117567 574324332 1056568 217 65 409 107 0.0 Metagenome 3300002045 *Microbiome Permanent Draft Soil microbial communities from Amlakhadi River, Gujarat, India Soil microbial communities from Amlakhadi River, Gujarat, India - Sample 9 3300002045 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Aquatic River Freshwater Sediment Soil 21.636337 72.989458 0 0 0 0 0 0 0.0 Metagenome 7000000387 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 158458797 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000387 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 3378505 4432 0 0 0 0 SRX023593, SRX023594 0.0 Metagenome 3300009508 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412 DOE Joint Genome Institute (JGI) 3300009508 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 27054497, 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 1570047347 2969905 1184 191 2129 305 SRX2999750 Unrestricted 0.0 Metagenome 3300031803 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - CB27_AW_983 DOE Joint Genome Institute (JGI) 3300031803 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 73.0038 -140.0007 1272680226 2631426 995 58 1530 109 SRX5817075 Unrestricted 14.94 Metagenome 3300002918 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-1-D DOE Joint Genome Institute (JGI) 3300002918 Metagenome Analysis Yes Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 149050278 256952 223 24 324 36 SRX2588616 Unrestricted 0.0 Metagenome 3300042089 *Microbiome Permanent Draft Sediment microbial communities from Haima cold seep, South China Sea, China Sediment microbial communities from Haima cold seep, South China Sea, China - SY70.4.11_HM2C Shanghai Majorbio Bio-pharm Technology Co. 3300042089 Metagenome Analysis IDBA v. 1.1.3 released by JGI data releasing policy No Yes sulei@tongji.edu.cn Lei Su No Environmental Aquatic Cold seeps Marine Sediment Sediment 16.729915 110.473367 .22 to .24 456914073 549554 138 1 162 2 0.0 Metagenome 3300070302 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_004-M-20191001-COMP-DNA1 3300070302 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 14948453 45162 50 0 94 2 0.0 Metagenome 3300069380 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_006-M-20160725-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069380 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 15864300 50321 39 7 85 12 0.0 Metagenome 3300008019 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Little Hot Creek, USA to study Microbial Dark Matter (Phase II) - LHC4sed_matched DOE Joint Genome Institute (JGI) 3300008019 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes brian.hedlund@unlv.edu, brian.hedlund@unlv.edu; rstepanauskas@bigelow.org Brian P. Hedlund, Brian Hedlund; Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring 37.6906 -118.8442 6.83 405988159 1157688 473 3 868 4 SRX2753913 Unrestricted 0.0 Metagenome 3300048988 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_33BD DOE Joint Genome Institute (JGI) 3300048988 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4391 -106.0507 243935612 420806 161 29 315 44 SRX20649563 Unrestricted 0.0 Metagenome 3300052654 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Photosynthetic mat viral communities from Octopus Spring, YNP, Wyoming, United States - OS20070729 OST4bottom DOE Joint Genome Institute (JGI) 3300052654 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.53408 -110.7979 7498729 13623 6 0 10 0 Unrestricted 1679.03 Metagenome 3300031966 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS55 DOE Joint Genome Institute (JGI) 3300031966 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 501836865 1029721 342 0 579 1 SRX6411888 Unrestricted 68.38 Metagenome 3300035112 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 DOE Joint Genome Institute (JGI) 3300035112 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 39.6589 -79.9058 997822390 2635637 883 94 1696 114 SRX8289129 Unrestricted 6.8 Metagenome 7000000369 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764811490 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000369 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 58589505 110290 0 0 0 0 0.0 Metagenome 3300027360 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 PM (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027360 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 190532699 518728 402 29 714 45 SRX2574406 Unrestricted 0.0 Metagenome 3300027742 *Microbiome Permanent Draft Marine microbial communities from the Santa Barbara Channel oil seeps Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027742 Metagenome Analysis spades v. 3.11.1 Yes Yes mhess@ucdavis.edu Matthias Hess Yes 24958360, 25197496 Environmental Aquatic Oil seeps Marine Unclassified Marine 34.39225 -119.845662 754165254 1421884 690 6 1063 14 SRX559946 Unrestricted 0.0 Metagenome 3300042067 *Microbiome Permanent Draft Forest and sugarcane field soil microbial communities from Santa Rita do Passa , Quatro, Sao Paulo, Brazil Soil microbial communities from forest in Santa Rita do Passa , Quatro, Sao Paulo, Brazil - FOR-W_1 UNESP-FCAV 3300042067 Metagenome Analysis Custom JGI assembly. Yes Yes No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -21.708519 -47.582469 24218563 48987 21 0 46 0 SRX9176024 0.0 Metagenome 3300036823 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in California, United States - CAM_5 DOE Joint Genome Institute (JGI) 3300036823 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil 36.5 -121.8 2530059393 3833037 564 123 871 180 SRX8386854 Unrestricted 11.73 Metagenome 3300014022 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01153 Weill Cornell Medical College 3300014022 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.9 22803880 44520 18 0 37 0 SRX823108 0.0 Metagenome 3300043630 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 287-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043630 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9806 -107.0389 500150485 1427586 571 36 999 54 Unrestricted 6.53 Metagenome 3300032114 *Microbiome Permanent Draft Microbial communities from the deep biosphere Marine sediment microbial communities from the Haakon Mosby mud volcano in the Barents Sea, Arctic Ocean - MSM16_2_823_1_MUC re-assembly The Marine Biological Laboratory 3300032114 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Mud volcano Marine Sediment Sediment 72.003 14.732 106771357 303926 100 1 202 5 SRX550007, SRX993398, SRX549991 0.0 Metagenome 7000000555 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human Mid vagina microbial communities from NIH, USA - visit 1, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000555 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Midpoint, Midpoint vagina Human 39.0042816 -77.1012173 2831295 3767 0 0 0 0 0.0 Metagenome 3300005566 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_02_20cm DOE Joint Genome Institute (JGI) 3300005566 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 1524476116 5099589 1720 94 2930 108 SRX2727978 Unrestricted 0.0 Metagenome 3300003502 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM DOE Joint Genome Institute (JGI) 3300003502 Metagenome Analysis revert back to private per Christa Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 33245565 96637 222 21 369 27 SRX2574905 Unrestricted 0.0 Metagenome 3300045688 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_2_E DOE Joint Genome Institute (JGI) 3300045688 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 155030255 178336 92 1 108 1 Unrestricted 104.02 Metagenome 3300045407 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Leaf microbial communities from farm grass in Deerfield, Massachusetts, United States - Orchardgrass_Phyllosphere_Drought3 DOE Joint Genome Institute (JGI) 3300045407 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 42.4788 -72.5788 757336875 1411623 195 214 307 355 Unrestricted 0.0 Metagenome 3300001032 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN410 DOE Joint Genome Institute (JGI) 3300001032 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Soil 44.20517707 -122.1284473 271430 831 39 0 45 0 SRX3311796 Unrestricted 0.0 Metagenome 3300070423 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Mountain Lake Biological Station, Virginia, USA - MLBS_003-O-20180612-COMP-DNA1 3300070423 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 35071228 101700 61 1 104 5 0.0 Metagenome 3300025887 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025887 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 855584261 1766089 332 196 480 303 SRX2855016 Unrestricted 0.0 Metagenome 3300064817 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 680 in Bonnyville, Alberta, Canada - S00JY_0668 Microbiome Insights 3300064817 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 54.19361867 -110.4724417 1611786 2566 9 0 15 0 0.0 Metagenome 3300042947 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-445 Genome Quebec 3300042947 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 52.670496 -109.211926 965458987 2181563 286 56 440 112 0.0 Metagenome 3300042316 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Feb2013s1D0-rr0630 DOE Joint Genome Institute (JGI) 3300042316 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 637053165 1015315 100 61 131 86 Unrestricted 24.58 Metagenome 3300069628 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_003-M-20170612-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069628 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 5370414 17528 55 15 121 25 0.0 Metagenome 3300020718 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 17SEP2007 epilimnion DOE Joint Genome Institute (JGI) 3300020718 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 106789479 233790 82 20 140 38 Unrestricted 0.0 Metagenome 3300046356 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_124 DOE Joint Genome Institute (JGI) 3300046356 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9223 -106.9493 205757527 690569 994 112 1940 197 Restricted 0.0 Metagenome 2044078019 *Microbiome Permanent Draft Concrete drainage pipe biofilm microbial communities from Ohio, US Concrete drainage pipe biofilm microbial communities from Ohio, US, sample, 12383 454 Life Sciences 2044078019 Metagenome Analysis released per JGI data release policy No Yes matlib.robin@epamail.epa.gov Robin Matlib No Environmental Aquatic Storm water Freshwater Drainage pipe biofilm Concrete drainage pipe biofilm 264174340 701542 169 0 270 0 0.0 Metagenome 3300009451 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 8m depth; DNA IDBA-UD Marine Biological Laboratory 3300009451 Metagenome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes jhuber@mbl.edu, jhuber@mbl.edu; jhuber@whoi.edu Huber, Huber; Julie Huber No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 6.5 237686228 500377 243 12 396 16 0.0 Metagenome 3300051855 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Sankt Oswald-Riedlhutte, Bavaria, Germany - BW_CL_001D DOE Joint Genome Institute (JGI) 3300051855 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.929961 13.426252 2361304232 5304961 840 41 1621 59 Unrestricted 9.92 Metagenome 3300020272 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100001971 (ERX556120-ERR599127) CEA Genoscope 3300020272 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 14.1468 -116.6821 298610401 692283 241 5 448 11 0.0 Metagenome 3300001258 *Microbiome Permanent Draft Comparative metagneomics of mesophilic and thermophilic cellulose-adapted consortia Cellulose adapted compost microbial communities from Newby Island Compost Facility, Milpitas, CA, USA - Passage2 37B DOE Joint Genome Institute (JGI) 3300001258 Metagenome Analysis SOAPdenovo v1.05, Newbler Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer Yes 25136443 Engineered Solid waste Composting Bio- and green waste (BGW) Unclassified Feedstock adapted compost 37.840898 -122.289614 138073274 247533 141 4 199 3 SRX3311900 Unrestricted 0.0 Metagenome 3300022146 *Microbiome Permanent Draft Enriched microbial communities from anaerobic bioreactor in Madison, Wisconsin, United States Xylose enriched microbial communities from anaerobic bioreactor in Madison, Wisconsin, United States - 18X DOE Joint Genome Institute (JGI) 3300022146 Metagenome Analysis spades v. 3.11.1-check Yes Yes noguera@engr.wisc.edu Daniel Noguera Yes 35343806 Engineered Bioreactor Unclassified Anaerobic Unclassified Xylose enrichment biomass 43.0737 -89.4147 44523685 57569 50 2 56 2 SRX5337693, SRX5337694 Unrestricted 394.21 Metagenome 3300026847 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 20 (SPAdes) DOE Joint Genome Institute (JGI) 3300026847 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 54881787 132755 69 0 143 1 SRX4339793 Unrestricted 0.0 Metagenome 3300026161 *Microbiome Permanent Draft Anaerobic reactors microbiome study Activated sludge microbial communities from lab. scaled anaerobic digester in Belvaux, Luxembourg - ACS0-59 University of Luxembourg 3300026161 Metagenome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 49.506216 5.943617 508885946 590402 85 4 207 1 0.0 Metagenome 3300047530 *Microbiome Permanent Draft Floating fern leaf microbial communities from various locations Floating fern leaf microbial communities from Amazonas, Colombia - 2019_IRRI DOE Joint Genome Institute (JGI) 3300047530 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dave.armitage@gmail.com David Armitage No Host-associated Plants Phylloplane/Leaf Phyllosphere Endophytes Leaf -4.1807 -69.9529 27513224 29759 9 5 8 6 Unrestricted 822.4 Metagenome 3300002581 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Downstream of discharge Sample CS4-50 454 Life Sciences 3300002581 Metagenome Analysis Genomes released to public per request from Dong Li (May 30 2014) No Yes lidong460@gmail.com Dong Li No Environmental Aquatic River Freshwater Sediment Freshwater sediment 21.34876 40.487145 6-8 0 0 0 0 0 0 0.0 Metagenome 3300030325 *Microbiome Permanent Draft Oil contaminated soil microbial communities from a military base in Taszar, Hungary Oil contaminated soil microbial communities from a military base in Taszar, Hungary - F2_6 University of Szeged 3300030325 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Terrestrial Unclassified Soil Oil-contaminated Oil contaminated soil 46.37386 17.90063 5825410 10325 9 0 23 0 0.0 Metagenome 3300046648 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere DOE Joint Genome Institute (JGI) 3300046648 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5881 -123.1929 643754487 1060066 220 41 389 66 Unrestricted 28.44 Metagenome 3300056614 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.5C.11 SIP fraction DOE Joint Genome Institute (JGI) 3300056614 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 176482306 296253 119 14 191 18 Unrestricted 14.41 Metagenome 3300042475 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME15Aug2013-rr0699 DOE Joint Genome Institute (JGI) 3300042475 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 755839508 1284186 227 27 377 38 Unrestricted 14.18 Metagenome 3300031713 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22 DOE Joint Genome Institute (JGI) 3300031713 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1701626322 4124594 406 2 639 6 SRX5817228 Unrestricted 13.97 Metagenome 3300028638 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_His DOE Joint Genome Institute (JGI) 3300028638 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 320659463 518149 235 1 327 2 SRX5281749 Unrestricted 24.46 Metagenome 3300006958 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge C. singaporensis. microbiome, Papua New Guinea CO2 seep, Upa-Upasina ""bubble"", co31is" University of New South Wales 3300006958 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au, n.webster@aims.gov.au; e.botte@aims.gov.au Nicole Webster, Nicole Webster; Emmanuelle BOTTE No Host-associated Porifera Unclassified Unclassified Unclassified Coelocarteria singaporensis (marine sponge) -9.8241 150.825833 12073252 32645 22 0 24 5 0.0 Metagenome 3300048511 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - Jacob104 DOE Joint Genome Institute (JGI) 3300048511 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Sand Soil Desert sand -78.0591 163.7658 376378232 848207 320 7 550 4 Unrestricted 0.0 Metagenome 3300000533 *Microbiome Permanent Draft Subarctic soil microbial communities from Stordalen Mire Sweden Subarctic soil microbial communities from Stordalen Mire Sweden Australian Centre for Ecogenomics 3300000533 Metagenome Analysis Mira released per JGI data release policy No Yes r.mondav@uq.edu.au, rhiannon.mondav@gmail.com Rhiannon Mondav No Environmental Terrestrial Wetlands Soil Permafrost Subarctic soil 68.3523 19.04743 3.7 2064259 2206 1 0 1 0 0.0 Metagenome 3300028373 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #563 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028373 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 190449671 376554 74 29 102 33 SRX2526869 Unrestricted 0.0 Metagenome 3300048837 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Sediment microbial communities from brackish wetlands in San Jose, California, USA - ROC9_1 DOE Joint Genome Institute (JGI) 3300048837 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Intertidal zone Marine Salt marsh sediment Sediment 37.427598 -121.938678 2852433616 4008090 954 59 1346 77 Unrestricted 21.97 Metagenome 3300010266 *Microbiome Permanent Draft Animal gut microbial communities from fecal samples from Wisconsin, USA Orangutan individual fecal microbial communities from fecal samples from Wisconsin, USA - O1111 metagenome DOE Joint Genome Institute (JGI) 3300010266 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes apneumann2@wisc.edu Anthony Neumann No Host-associated Mammals Large intestine Digestive system Fecal Orangutan individual fecal 43.78 -88.79 232877675 369572 640 0 928 0 SRX2506181 Unrestricted 0.0 Metagenome 3300025938 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025938 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 3481611301 8460825 1275 97 2544 162 SRX2790521 Unrestricted 0.0 Metagenome 3300049377 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - 9-3 DOE Joint Genome Institute (JGI) 3300049377 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 121573963 352047 278 5 480 15 Unrestricted 9.05 Metagenome 3300022693 *Microbiome Permanent Draft Deep seafloor sediment microbial communities from Yap Trench, western Pacific Ocean Marine sediment microbial community from Yap Trench, western Pacific Ocean - JL-Dive112-S06 Third Institute of Oceanography, State Oceanic Administration 3300022693 Metagenome Analysis idba v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Sediment Marine Unclassified sediment 9.866 138.493 955093857 1674238 482 14 952 43 0.0 Metagenome 3300011601 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00371 Weill Cornell Medical College 3300011601 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.94 22936351 39216 22 1 37 1 SRX822342 0.0 Metagenome 3300019287 *Microbiome Permanent Draft Mouse fecal microbial communities from Athens, Georgia, USA Mouse fecal microbial communities from Athens, Georgia, USA - 8A1B Georgia Genomics Facility 3300019287 Metagenome Analysis megahit released by JGI data releasing policy No Yes ptu@live.unc.edu Pengcheng Tu No Host-associated Mammals Large intestine Digestive system Fecal mouse fecal 33.9519 -83.3576 34131339 47982 69 0 72 0 0.0 Metagenome 3300006617 *Microbiome Permanent Draft Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia - TJ09 time point Australian Centre for Ecogenomics 3300006617 Metagenome Analysis CLC released per JGI data release policy No Yes crinke@lbl.gov Christian Rinke No Environmental Aquatic Coastal Marine Unclassified marine surface water -34.1192 151.2267 217147496 298154 37 10 42 6 0.0 Metagenome 3300047454 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_150624.NP1 DOE Joint Genome Institute (JGI) 3300047454 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 411683392 828297 312 73 489 121 Unrestricted 10.33 Metagenome 3300011997 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A15_80cm_18M University of Tennessee 3300011997 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 301564491 609942 114 4 228 4 SRX710625 0.0 Metagenome 3300038390 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - RDC-2_at_3-4_cm Genome Quebec 3300038390 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.80159 -73.41443 688959254 1742695 844 11 1758 26 0.0 Metagenome 2001200003 *Microbiome Finished Fossil microbial community from Whale Fall, Santa Cruz Basin of the Pacific Ocean and West Antarctic Peninsula Fossil microbial communities from Whale Fall, Santa Cruz Basin - Microbial Mat Sample DOE Joint Genome Institute (JGI) 2001200003 Metagenome Analysis No Yes emrubin@lbl.gov Eddy Rubin Yes 15845853 Environmental Aquatic Fossil Marine Whale fall Fossil 33.3 -119.22 32347432 42521 2 0 4 0 0.0 Metagenome 3300014587 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 248_D2_2014-9-5 San Diego State University 3300014587 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 9107078 23411 23 5 48 12 0.0 Metagenome 3300020558 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 13OCT2010 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020558 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 157166718 332322 150 41 241 54 SRX1989294 Unrestricted 0.0 Metagenome 3300001572 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP0900 DOE Joint Genome Institute (JGI) 3300001572 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -33.55 39.89 36031019 68251 49 1 89 6 SRX1982922 Unrestricted 0.0 Metagenome 3300026933 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10K4-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026933 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 58497542 172289 111 3 241 4 SRX2576206 Unrestricted 0.0 Metagenome 3300001860 *Microbiome Permanent Draft Trichloroethene dechlorinating bioreactor microbial communities from Berkeley, California, USA Trichloroethene dechlorinating bioreactor microbial communities from Berkeley, California, USA - LACBS007D 3300001860 Metagenome Analysis released by JGI data releasing policy No Yes benstenuit@gmail.com Benoit stenuit, Ben A. Stenuit No Engineered Bioremediation Chloroethene Tetrachloroethylene and derivatives Bioreactor Trichloroethene dechlorinating bioreactor 37.87 -122.26 31761978 59093 0 0 0 0 0.0 Metagenome 3300029089 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 12_M Beijing Genomics Institute (BGI) 3300029089 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 116252236 139277 72 0 133 0 ERX490943 0.0 Metagenome 3300025305 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025305 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 40.24 2.3 352168271 747277 86 0 97 0 SRX2753823 Unrestricted 0.0 Metagenome 3300013596 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100140 University of Pennsylvania 3300013596 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4673932 9130 5 3 11 7 SRX756392 0.0 Metagenome 3300035394 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from Middle Island sinkhole, Lake Huron, Michigan, United States - MIS.2016.226 reassembly DOE Joint Genome Institute (JGI) 3300035394 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes macgregb@umn.edu; sgrim@umich.edu Barbara MacGregor; Sharon Grim No Environmental Aquatic Lake Freshwater Sediment microbial mat 45.1993 -83.3279 183463531 234188 54 7 81 7 SRX7582714 0.0 Metagenome 3300005953 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_Bottom_ad_3770_LV_A DOE Joint Genome Institute (JGI) 3300005953 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 627077916 1730337 788 40 1361 77 SRX2779516 Unrestricted 0.0 Metagenome 3300051210 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Yenisei River, Krasnoyarsk Krai, Russia - Yenisey 2005-6 DOE Joint Genome Institute (JGI) 3300051210 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 69.3833 86.15 848044667 1878784 577 283 820 456 Restricted 0.0 Metagenome 3300020319 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_S200000501 (ERX556039-ERR599073) CEA Genoscope 3300020319 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 35.7593 14.3453 235769130 596251 172 2 360 6 0.0 Metagenome 3300031553 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-240 DOE Joint Genome Institute (JGI) 3300031553 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh sediment 42.722 -70.847 594448981 1163976 522 11 786 18 SRX6465381 Unrestricted 19.57 Metagenome 3300038672 *Microbiome Finished Marine algae associated bacterial community from Sydney, Australia Marine algae associated bacterial community from Sydney, Australia - Ulva australis_2R2 Ramaciotti Centre for Genomics 3300038672 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes j.nappi@unsw.edu.au Jadranka Nappi No Host-associated Algae Unclassified Unclassified Unclassified Marine -33.916302 151.267774 370114558 537539 58 7 124 11 0.0 Metagenome 3300011869 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00615 Weill Cornell Medical College 3300011869 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.81 -73.92 46548109 71796 34 0 42 0 SRX822582 0.0 Metagenome 3300045196 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_4_D DOE Joint Genome Institute (JGI) 3300045196 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 173155967 212901 84 1 132 1 Unrestricted 80.85 Metagenome 3300053120 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 endosphere DOE Joint Genome Institute (JGI) 3300053120 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121423 -123.271523 661371543 1115476 239 90 384 130 Unrestricted 14.36 Metagenome 3300026099 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_D1_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026099 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Soil 37.4973 -122.1295 106384757 253667 195 14 342 23 SRX2523924 Unrestricted 0.0 Metagenome 3300013375 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01139 Weill Cornell Medical College 3300013375 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -73.93 20518116 35140 19 0 26 0 SRX823094 0.0 Metagenome 3300048063 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_190605.NP1 DOE Joint Genome Institute (JGI) 3300048063 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 547536090 1192488 349 74 525 135 Unrestricted 14.39 Metagenome 3300021233 *Microbiome Permanent Draft Environmental DNA from pond Freshwater microbial communities from Taiko Pond in Toyama Prefecture, Japan-20161115, permeate, 100K Toyama Prefectural University 3300021233 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Pond Freshwater Unclassified freshwater 36.70814 137.09773 72771588 185195 23 9 47 20 0.0 Metagenome 3300011887 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00608 Weill Cornell Medical College 3300011887 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.79 -73.94 49925278 78259 36 0 46 0 SRX822575 0.0 Metagenome 3300029947 *Microbiome Permanent Draft Baboon gut microbial communities from fecal samples in Kenya Baboon gut microbial communities from fecal samples in Kenya - M15 Duke University 3300029947 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Baboon gut 2.717 37.1 74386107 109114 97 0 157 1 SRX834659 0.0 Metagenome 3300029316 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 006_6_2_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029316 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 194053279 260849 174 0 235 0 0.0 Metagenome 3300003249 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK03-E DOE Joint Genome Institute (JGI) 3300003249 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 351327 1125 12 2 37 8 SRX2575261 Unrestricted 0.0 Metagenome 3300017449 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial mat communities from California, USA to study Microbial Dark Matter (Phase II) - Cone Pool mat layer E metaG (SPADES assembly) (version 3) DOE Joint Genome Institute (JGI) 3300017449 Metagenome Analysis MEGAHIT v. 1.0.6 released Yes Yes rstepanauskas@bigelow.org; jspear@mines.edu Ramunas Stepanauskas; John Spear No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 246781623 528282 359 3 579 11 SRX7204507 Unrestricted 0.0 Metagenome 3300002178 *Microbiome Permanent Draft Marine microbial communities from oxygen minimum zone in the mesopelagic equatorial Pacific Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_150m DOE Joint Genome Institute (JGI) 3300002178 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes cdupont@jcvi.org Chris Dupont, Chris L. Dupont No Environmental Aquatic Oceanic Marine Unclassified Marine 8.0 -156.0 181297340 422891 267 5 453 8 SRX1991079 Unrestricted 0.0 Metagenome 3300030238 *Microbiome Permanent Draft Marine Fish Microbial Metagenomes Coastal fish gut microbial communities from Southern California Bight, Pacific Ocean - GN2B University of California, San Diego, Scripps Institute of Oceanography 3300030238 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton No Host-associated Fish Intestine Digestive system Unclassified fish gut 33.44520833 -118.4855722 1058490 1308 2 1 1 2 0.0 Metagenome 3300029067 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 103_4M Beijing Genomics Institute (BGI) 3300029067 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 23862159 23664 14 0 19 1 ERX490925 0.0 Metagenome 3300017571 *Microbiome Permanent Draft Bras del Port Noviembre 2014 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CR41 Nov 2014 University of Valencia 3300017571 Metagenome Analysis idba.1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Non-marine hypersaline water 38.1922 -0.5918 28298090 90584 1 0 1 0 0.0 Metagenome 3300013240 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100378 University of Pennsylvania 3300013240 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 29980789 67467 51 8 89 18 SRX756279 0.0 Metagenome 3300003852 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from the University of Notre Dame, USA, of lakes that contribute to methane emissions Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB DOE Joint Genome Institute (JGI) 3300003852 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes sjones20@nd.edu Stuart Jones No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 41.7 -86.23 866580994 1988466 796 34 1260 62 SRX2576302 Unrestricted 0.0 Metagenome 3300004109 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_150m_DNA DOE Joint Genome Institute (JGI) 3300004109 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 455819034 1091304 517 3 909 5 Unrestricted 0.0 Metagenome 3300040248 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from LBJ National Grassland , Southern Plains, TX, USA - CLBJ_033-M-20170413-COMP-DNA1 Battelle Memorial Institute 3300040248 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 33.40123 -97.57 6954843 20154 28 2 46 4 0.0 Metagenome 3300045029 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Plains ecozone, Canada - Lake 04-582 Genome Quebec 3300045029 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 68.335154 -133.680514 1214468009 2904264 493 80 765 139 0.0 Metagenome 3300050214 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Leeds, Wisconsin, USA - 25_757_WI_DR_0cm_c1_T1_16O DOE Joint Genome Institute (JGI) 3300050214 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 43.30485 -89.3309 482250758 843630 252 2 486 4 Restricted 13.16 Metagenome 3300029564 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P033V1 Beijing Genomics Institute (BGI) 3300029564 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 183093286 230762 150 0 225 0 0.0 Metagenome 3300035378 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada -18E_3b_20_7 mgh University of Alberta 3300035378 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified wastewater 56.7292 -111.3885 69590355 86750 29 0 43 0 0.0 Metagenome 3300010221 *Microbiome Permanent Draft Freshwater microbial communities enriched with nitrile substrates Freshwater aquifer microbial community from Bangor, North Wales, UK, before enrichment, replicate 1 Fidelity Systems Inc 3300010221 Metagenome Analysis Phred/Phrap/Consed v. 23.0 released per JGI data release policy Yes Yes stepan.toshchakov@gmail.com Stepan Toshchakov No Environmental Aquatic Groundwater Deep subsurface Unclassified freshwater 53.23 -4.13 102662290 181992 53 0 80 0 0.0 Metagenome 3300000864 *Microbiome Permanent Draft Freshwater and marine microbial communities from the Columbia River, USA, of estuaries and plumes across salinity gradients Marine plume microbial communities from the Columbia River - Metatranscriptome 25 PSU University of Maryland 3300000864 Metagenome Analysis released per PI's request No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato Yes 26536246 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Freshwater and marine 46.235 -124.16 24148901 56425 592 299 1667 853 0.0 Metagenome 3300035633 *Microbiome Permanent Draft Hypersaline lacustrine bacterial communities from Kiritimati Island Lacustrine bacterial communities from hypersaline Lake 1, Kiritimati Island, Kiribati - 0-5 cm University of Illinois, Urbana-Champaign 3300035633 Metagenome Analysis MEGAHIT v. 1.1.1 released by Mingfei Chen No Yes jconro@illinois.edu Jessica Conroy No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Sediment lacustrine 1.9 -157.4 629509702 820485 102 16 163 25 0.0 Metagenome 3300014100 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Thailand to Iowa, USA - T5 Iowa State University 3300014100 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 3333429 6236 0 3 0 0 SRX1150302 0.0 Metagenome 3300056896 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E1P_20_22 DOE Joint Genome Institute (JGI) 3300056896 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.996961 -81.487381 1860795697 2725603 598 0 1004 0 Unrestricted 14.93 Metagenome 3300026672 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1102 (SPAdes) DOE Joint Genome Institute (JGI) 3300026672 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 9882279 26340 47 5 73 4 SRX3311884 Unrestricted 0.0 Metagenome 3300065601 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 798 in Beiseker, Alberta, Canada - S00JY_0331 Microbiome Insights 3300065601 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.24546833 -113.3320866 105489147 155818 69 2 106 4 0.0 Metagenome 3300007635 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_A_D1_MG DOE Joint Genome Institute (JGI) 3300007635 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, jzz0026@lbl.gov; stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Jinglie Zhou; Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4969 -122.1331 689817367 1262075 803 3 1284 7 SRX2523446 Unrestricted 0.0 Metagenome 3300046764 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Illinois River, Illinois, USA - NASQAN2011_096 DOE Joint Genome Institute (JGI) 3300046764 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 39.7033 -90.6454 46273976 141563 133 54 240 85 Unrestricted 0.0 Metagenome 3300025150 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG10_big_fil_rev_8/21/14_0.10 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025150 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 1088149196 1804170 1620 8 2382 21 SRX3348159 Unrestricted 0.0 Metagenome 3300070631 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_073-M-20200714-COMP-DNA1 3300070631 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 32642056 90285 53 17 98 21 0.0 Metagenome 3300005192 *Microbiome Permanent Draft Mallorca 2014 E5 E5 T9 University of Alicante 3300005192 Metagenome Analysis IDBA 1.1.1 PRE correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline 39.338015 3.051796 37498188 102701 3 0 2 0 0.0 Metagenome 3300042628 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A20 University of California, Davis 3300042628 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 161253070 466809 257 5 471 11 0.0 Metagenome 3300030433 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_046 - TARA_R100000406 CEA Genoscope 3300030433 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -0.6625 73.161 190420479 386477 35 0 45 0 0.0 Metagenome 3300016666 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water reservoir in Singapore - WB_Site 3, Oct Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016666 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Lake Freshwater Unclassified freshwater 1.35 103.87 88343601 116684 8 0 8 0 0.0 Metagenome 3300022827 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #333 DOE Joint Genome Institute (JGI) 3300022827 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 150261289 264377 93 57 119 81 SRX4396774 Unrestricted 18.51 Metagenome 3300002194 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC3b day 01 University of Sao Paulo, Virginia Bioinformatics Institute 3300002194 Metagenome Analysis SoapDeNovo released per PI's request No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 91043160 243885 6 2 34 3 0.0 Metagenome 3300060401 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210618_22_09 DOE Joint Genome Institute (JGI) 3300060401 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 384337310 560266 235 120 282 151 Unrestricted 31.03 Metagenome 3300000217 *Microbiome Permanent Draft Delisea pulchra's surface microbial communities from Botany Bay, Sydney, Australia Delisea pulchra's surface microbial communities from Botany Bay, Sydney, Australia - BBAY60_SOAP_k21_Abyss_k55_GAA J. Craig Venter Institute 3300000217 Metagenome Analysis Assembled with SOAPdenovo and Abyss separately and then joined with GAA released per JGI data release policy No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Red algae Unclassified Delisea pulchra's surface -33.991017 151.232433 559631163 1165571 0 0 0 0 0.0 Metagenome 3300026126 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_D2_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026126 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Soil 37.4971 -122.129 208168450 454684 250 7 421 12 SRX2523922 Unrestricted 0.0 Metagenome 3300050141 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim3 90-94 DOE Joint Genome Institute (JGI) 3300050141 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.352963 19.04747 260677688 448665 177 20 281 27 Restricted 22.61 Metagenome 3300054060 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100 re-annotation DOE Joint Genome Institute (JGI) 3300054060 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 761057777 1441579 360 8 581 11 SRX3959985 0.0 Metagenome 3300006130 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t1_692M_control - microbial_metagenome University of Texas Southwestern Medical Center 3300006130 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 117183459 207401 108 0 121 0 0.0 Metagenome 3300014084 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01523 Weill Cornell Medical College 3300014084 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.99 14854380 19374 7 0 11 0 SRX823399 0.0 Metagenome 2166559016 *Microbiome Permanent Draft Microbial communities from the Atlantic Ocean and human feces from France, grouped together for a comparative study Marine microbial communities from the Atlantic Ocean, for comparison studies - Ocean4 (mb2001jd135 3716) 454 Life Sciences 2166559016 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Aquatic Oceanic Marine Unclassified Environmental and host-associated 49311817 82333 148 8 337 9 0.0 Metagenome 3300069475 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_002-O-20160830-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069475 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 74988855 223082 167 27 314 39 0.0 Metagenome 3300021438 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG DOE Joint Genome Institute (JGI) 3300021438 Metagenome Analysis spades v. 3.11.1-check Yes Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 324246460 713544 328 33 490 53 SRX4035685 Unrestricted 24.8 Metagenome 3300029231 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012069-37 Beijing Genomics Institute (BGI) 3300029231 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 153426149 209448 137 2 198 0 0.0 Metagenome 3300056745 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.19C.9 SIP fraction DOE Joint Genome Institute (JGI) 3300056745 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 121896523 276060 66 13 133 20 Unrestricted 17.18 Metagenome 3300012641 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100391 University of Pennsylvania 3300012641 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 26713274 57867 19 5 50 19 SRX756266 0.0 Metagenome 3300044618 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME15Jul2015-rr0960 DOE Joint Genome Institute (JGI) 3300044618 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1051946217 1658425 393 135 536 170 Unrestricted 17.35 Metagenome 3300031472 *Microbiome Permanent Draft Rock endolithic microbial communities from Victoria Land, Antarctica Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak red sandstone DOE Joint Genome Institute (JGI) 3300031472 Metagenome Analysis spades v. 3.12.0 Yes Yes selbmann@unitus.it Laura Selbmann Yes 32139564 Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock -77.9 159.06 1099460845 1767563 318 48 447 80 SRX5229449 Unrestricted 30.96 Metagenome 3300020010 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - L1s2 DOE Joint Genome Institute (JGI) 3300020010 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.8926 -106.9111 202284401 470440 293 11 582 20 SRX3958802, SRX3958801 Unrestricted 0.0 Metagenome 3300039711 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONZ_024-M-20170710-COMP-DNA1 Battelle Memorial Institute 3300039711 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.10077 -96.56309 49706748 132678 126 5 220 8 0.0 Metagenome 3300038847 *Microbiome Permanent Draft Activated sludge microbial communities from anaerobic digester at WWTP from various locations in Denmark Activated sludge microbial communities from anaerobic digester at WWTP in Viborg, Denmark - SA-RHK-527 Aalborg University 3300038847 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified Activated sludge 56.425573 9.455083 38996978 68750 46 2 62 2 0.0 Metagenome 3300028154 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_28AUG2017_LD1 DOE Joint Genome Institute (JGI) 3300028154 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 79831886 153968 19 86 46 115 SRX5345906 Unrestricted 17.82 Metagenome 3300029380 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 075_4_28_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029380 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 296213691 414465 328 0 463 0 0.0 Metagenome 3300037296 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Burch Lake #418 DOE Joint Genome Institute (JGI) 3300037296 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4547 78.2627 461904095 813799 268 1 332 3 SRX9173605 Unrestricted 34.71 Metagenome 3300044665 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Roots microbial communities from millet plant in semiarid region near Thies, Senegal - COC1E DOE Joint Genome Institute (JGI) 3300044665 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Unclassified Roots Unclassified Root 14.75 -16.85 817425060 1231214 13 27 40 46 Unrestricted 25.07 Metagenome 3300001453 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 415-1 deep-092012 DOE Joint Genome Institute (JGI) 3300001453 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 57862685 142040 113 1 206 1 SRX1987674 Unrestricted 0.0 Metagenome 3300044957 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Towuti Lake, South Sulawesi, Indonesia - Towuti_30m_2014 DOE Joint Genome Institute (JGI) 3300044957 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.7 121.4 663622767 1213301 394 68 615 104 Unrestricted 25.83 Metagenome 3300022334 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Garden Lake, Rottnest Island (WA - Australia) - GL2WO2 JM14 AGRF 3300022334 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.99737 115.536569 30145329 56801 37 0 49 0 0.0 Metagenome 3300033271 *Microbiome Permanent Draft Meromitic Lake A Freshwater microbial communities from meromitic lake A, Ellesmere Island, Canada - Sample 6m re-sequencing Laval University 3300033271 Metagenome Analysis SPADES v. 3.10.1 released by JGI data releasing policy Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 82.99445 -75.443367 476598038 1795927 311 34 638 64 0.0 Metagenome 3300027522 *Microbiome Permanent Draft Marine microbial communities from the West Antarctic Peninsula, for metatranscriptomic analysis Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027522 Metagenome Analysis spades v. 3.11.1 Yes Yes mattcott@udel.edu Matthew T. Cottrell No Environmental Aquatic Coastal Marine Unclassified Marine -64.8156 -64.0406 322527853 646428 100 13 160 18 SRX2848091 Unrestricted 0.0 Metagenome 3300021517 *Microbiome Permanent Draft Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Balambano_FR2_MetaG DOE Joint Genome Institute (JGI) 3300021517 Metagenome Analysis spades v. 3.11.1-check Yes Yes rlsimister@gmail.com Rachel Simister No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment -2.651 121.2318 516367407 1054732 561 30 903 40 SRX4020278, SRX5645273 Unrestricted 0.0 Metagenome 3300037540 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_100m_C4_20cm25cm DOE Joint Genome Institute (JGI) 3300037540 Metagenome Analysis metaspades v. 3.13.0 Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 37.1343 -121.4557 1978346366 3231479 798 6 1281 2 SRX9141777 Unrestricted 18.01 Metagenome 3300003075 *Microbiome Permanent Draft Coral viral communities from Mount Irvine Bay, Buccoo, Tobago, from healthy and bleached corals Coral viral communities from Mount Irvine Bay, Buccoo, Tobago - healthy corals 3300003075 Metagenome Analysis Made public because these are downloaded from Genbank No Yes kmarhaver@ucsd.edu Marhaver, KL Yes 18479440 Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral 11.183496 -60.816715 720487 2010 0 0 0 0 0.0 Metagenome 3300034251 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 43SMS DOE Joint Genome Institute (JGI) 3300034251 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Sub-biocrust Soil Unclassified sub-biocrust soil 34.3778 -117.6098 358828221 876602 532 12 951 18 SRX7621468 Unrestricted 9.46 Metagenome 3300024264 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MG DOE Joint Genome Institute (JGI) 3300024264 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca; shallam@interchange.ubc.ca Sean Crowe; Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5847 -123.5008 1026790359 1936195 497 113 729 207 SRX4488544 Unrestricted 27.17 Metagenome 3300050033 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 P3 50-54 DOE Joint Genome Institute (JGI) 3300050033 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3535 19.0473 638553839 872305 209 4 264 6 Restricted 22.35 Metagenome 3300004055 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWB_D2 DOE Joint Genome Institute (JGI) 3300004055 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 37.926434 -122.509186 984055726 2518277 787 10 1518 14 SRX7142967 Unrestricted 0.0 Metagenome 3300017704 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - Lowphox_07 viral metaG DOE Joint Genome Institute (JGI) 3300017704 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -20.1 -70.419 149902465 358890 15 3 26 4 SRX7206583 Unrestricted 15.26 Metagenome 3300006352 *Microbiome Permanent Draft Marine microbial communities from the West Antarctic Peninsula, for metatranscriptomic analysis Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG108-DNA DOE Joint Genome Institute (JGI) 3300006352 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes mattcott@udel.edu Matthew Cottrell, Matthew T. Cottrell No Environmental Aquatic Coastal Marine Unclassified Marine -64.8156 -64.0406 703643715 2042806 596 70 1047 116 SRX2848426 Unrestricted 0.0 Metagenome 3300049336 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC21 DOE Joint Genome Institute (JGI) 3300049336 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 164649218 390697 336 11 770 17 Unrestricted 24.21 Metagenome 3300032004 *Microbiome Permanent Draft Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 DOE Joint Genome Institute (JGI) 3300032004 Metagenome Analysis spades v. 3.12.0 Yes Yes agaudin@ucdavis.edu Amelie Gaudin No Host-associated Plants Rhizosphere Roots Soil rhizosphere 38.5 -121.7 4380144348 10791458 2278 129 3841 188 SRX5799631 Unrestricted 10.47 Metagenome 3300064901 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 687 in Warspite, Alberta, Canada - S00JY_0790 Microbiome Insights 3300064901 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 54.0558482 -112.3659904 15274687 22985 24 1 50 2 0.0 Metagenome 3300008109 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-53-LTR University of Michigan 3300008109 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7026 -83.2538 9.29 369481793 487409 46 77 68 124 0.0 Metagenome 3300011791 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - seawater enrichment SCG65 University of British Columbia 3300011791 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 2209979 4747 4 0 2 0 SRX143174 0.0 Metagenome 3300043123 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10CP15 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043123 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 117562772 279790 166 3 247 7 SRX8377786 Unrestricted 17.62 Metagenome 3300025260 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP112 (SPAdes) DOE Joint Genome Institute (JGI) 3300025260 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com; sacinas@icm.csic.es Matthew Sullivan; Silvia G. Acinas Yes 27654921 Environmental Aquatic Oceanic Marine Unclassified Deep ocean 15.9164 -124.5211 174048374 357985 114 1 145 0 SRX4915165 Unrestricted 0.0 Metagenome 2189573005 *Microbiome Finished Grass soil microbial communities from Rothamsted Park plot 3d, Harpenden, UK Grass soil microbial communities from Rothamsted Park, UK - FG3 (Nitrogen) 454 Life Sciences 2189573005 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Terrestrial Unclassified Soil Grasslands Grass soil 51.804241 -0.372114 374475692 1042578 478 13 888 22 0.0 Metagenome 3300006431 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T18 (1) (BES), Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006431 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, nicolas.tsesmetzis@shell.com; ianhead@ncl.ac.uk Nicolas Tsesmetzis, Nicolas Tsesmetzis; Ian Head No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 29674326 57285 40 0 56 0 0.0 Metagenome 3300035002 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Tildeniella nuda ZEHNDER 1965/U140 and co-occurring heterotrophs from rock surface from Stansstaad, Zurih, Switzerland - 20181029_55A DOE Joint Genome Institute (JGI) 3300035002 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Rock surface 47.3732 8.5552 101622070 119116 36 0 43 0 SRX8237594 Unrestricted 126.84 Metagenome 3300039134 *Microbiome Permanent Draft Freshwater microbial communities from various watersheds in Southwestern British Columbia, Canada Freshwater microbial communities from Southwestern British Columbia, Canada - UPL_034 University of British Columbia 3300039134 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 49.0 -123.0 12224899 20761 23 0 21 0 0.0 Metagenome 3300032462 *Microbiome Permanent Draft Freshwater microbial communities from lake liftoff mats and glacier meltwater in Antarctica Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (spades assembly) (version 2) DOE Joint Genome Institute (JGI) 3300032462 Metagenome Analysis spades v. 3.13.0 Yes Yes slonczewski@kenyon.edu Joan Slonczewski No Environmental Aquatic Ice Freshwater Glacier meltwater Freshwater -77.605 163.163 1681483878 2903751 311 94 425 110 SRX2753510 Unrestricted 30.3 Metagenome 3300033066 *Microbiome Finished Seoul Wastewater Treatment Plant Virome, South Korea Activated sludge viral community from Jungnang wastewater treatment plant, Seoul, South Korea - JWWTP-sludge v. 1 Macrogen 3300033066 Metagenome Analysis SPAdes v. 3.10.1 released by JGI data releasing policy No Yes chojc@inha.ac.kr Jang-Cheon Cho No Engineered Wastewater Unclassified Activated Sludge Unclassified Wastewater 37.557429 127.065627 65328013 94131 0 0 0 0 0.0 Metagenome 3300017678 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - W13-18 University of Michigan 3300017678 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu; sjackrel@ucsd.edu Vincent Denef; Sara Jackrel No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.39757 -85.38536 42676064 55925 19 0 31 0 0.0 Metagenome 3300037835 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_3000m_C1_0cm DOE Joint Genome Institute (JGI) 3300037835 Metagenome Analysis metaspades v. 3.13.0 Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.799 -121.0256 1327958257 2229551 498 7 841 12 SRX9604192, SRX9604193 Unrestricted 0.0 Metagenome 3300048876 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - P1-R1-B DOE Joint Genome Institute (JGI) 3300048876 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.355 19.0438 387206960 778329 145 4 300 10 Unrestricted 0.0 Metagenome 3300025451 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_>0.8_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025451 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 160621768 417399 168 84 239 154 SRX2854047 Unrestricted 0.0 Metagenome 3300009938 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R8 University of New South Wales 3300009938 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 105191032 192802 80 1 102 1 0.0 Metagenome 3300032180 *Microbiome Permanent Draft Hardwood forest soil microbial communities from various locations in the United States Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 DOE Joint Genome Institute (JGI) 3300032180 Metagenome Analysis spades v. 3.13.0 Yes Yes jdraff@indiana.edu Jonathan Raff No Environmental Terrestrial Temperate forest Soil Bulk soil hardwood forest soil 39.0844 -86.4705 7868572651 19214621 2645 49 4676 89 SRX6409952 Unrestricted 7.03 Metagenome 3300069314 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_003-M-20140415-COMP-DNA1 re-annotation Argonne National Laboratory 3300069314 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 5587831 16618 49 3 68 1 ERX2133938 0.0 Metagenome 3300005833 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK Oregon Health and Science University (OHSU) 3300005833 Metagenome Analysis unassembled released per JGI data release policy No Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Unclassified Sediment Unclassified sediment (intertidal) 46.18749 -123.58892 1209967712 2379520 1215 51 2287 88 0.0 Metagenome 3300034099 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B1A0.3 DOE Joint Genome Institute (JGI) 3300034099 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 432998871 1163110 730 1 1339 3 SRX7658933 Unrestricted 7.03 Metagenome 3300027750 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027750 Metagenome Analysis spades v. 3.11.1 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.0936 -100.2988 544460120 1486091 637 78 1246 128 SRX2122695 Unrestricted 0.0 Metagenome 3300007792 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159207311 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007792 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 22318096 37994 36 0 66 0 0.0 Metagenome 3300040339 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_002-M-20170705-COMP-DNA1 Battelle Memorial Institute 3300040339 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 4524507 12905 31 3 43 5 0.0 Metagenome 3300018084 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1 DOE Joint Genome Institute (JGI) 3300018084 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 .32 1146150064 2513578 763 14 1452 24 SRX3939582 Unrestricted 5.19 Metagenome 3300026853 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A5w-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026853 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 44603838 138477 154 4 287 9 SRX1991302 Unrestricted 0.0 Metagenome 3300017816 *Microbiome Permanent Draft Comparative metagneomics of mesophilic and thermophilic cellulose-adapted consortia Cellulose adapted compost microbial communities from Newby Island Compost Facility, Milpitas, CA, USA - Passage2 37A (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017816 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes SWSinger@lbl.gov Steven W. Singer Yes 25136443 Engineered Solid waste Composting Bio- and green waste (BGW) Unclassified Feedstock adapted compost 37.840898 -122.289614 351196916 635693 277 16 411 21 SRX3782539 Unrestricted 0.0 Metagenome 3300028817 *Microbiome Permanent Draft Axial Seamount Reassemblies Marine deep subsurface microbial communities from hydrothermal vents in Axial Seamount, Pacific Ocean - FS903_Marker113_DNA IDBA_UD reassembly The Marine Biological Laboratory 3300028817 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Marine deep subsurface 45.922741 -129.988104 151877137 361168 366 5 607 14 0.0 Metagenome 3300045965 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P34SSC2_190917_i DOE Joint Genome Institute (JGI) 3300045965 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 838994725 1329930 282 0 448 0 SRX20650500 Unrestricted 11.71 Metagenome 3300015080 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6C, Proglacial plain, adjacent to northern proglacial tributary) University of Bristol 3300015080 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.155672 -50.084881 5.69 98312835 219191 101 3 168 11 0.0 Metagenome 3300025858 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025858 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 35.92 139.63 758318286 1400489 628 9 971 6 SRX2338885 Unrestricted 0.0 Metagenome 3300000371 *Microbiome Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine microbial community from Union City, CA, USA - Pond 1C Liquid 3 DOE Joint Genome Institute (JGI) 3300000371 Metagenome Analysis released based on JGI ITS Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Enviromental 37.5693 -122.102517 47212914 125124 128 8 216 14 Unrestricted 0.0 Metagenome 3300028531 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung G36 DOE Joint Genome Institute (JGI) 3300028531 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Elk feces 38.04 -122.5 193708877 353889 167 21 248 33 SRX5092980, SRX5092979 Unrestricted 0.0 Metagenome 7000000193 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 764184357 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000193 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 130414053 187632 0 0 0 0 0.0 Metagenome 3300048618 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT_PTT1_OCT19_180cm DOE Joint Genome Institute (JGI) 3300048618 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9883 -108.4003 397759449 907177 380 2 719 2 Restricted 17.17 Metagenome 3300023174 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 DOE Joint Genome Institute (JGI) 3300023174 Metagenome Analysis spades v. 3.11.1-check Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.95 1367569140 2326299 492 37 742 45 SRX4664145, SRX4664144, SRX4664147, SRX4664146, SRX4664143, SRX4664142 Unrestricted 33.56 Metagenome 3300011508 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01396 Weill Cornell Medical College 3300011508 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.61 -73.98 18948263 30104 14 0 19 0 SRX823336 0.0 Metagenome 3300045045 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - Rondonia_Forest_1_A10cm DOE Joint Genome Institute (JGI) 3300045045 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.169 -62.782 466456417 1152945 294 4 585 7 Unrestricted 9.74 Metagenome 3300037179 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 P2 1-5 DOE Joint Genome Institute (JGI) 3300037179 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0473 804903285 1718926 298 28 559 51 SRX8144894 Unrestricted 7.28 Metagenome 3300045918 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Microbial mat bacterial communities from wetland, North Slope, Alaska, United States - OKS_WetSedge1_19July2019 DOE Joint Genome Institute (JGI) 3300045918 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes demerson@bigelow.org David Emerson No Environmental Aquatic Wetlands Freshwater Unclassified wetland microbial mat 68.6727 -149.1378 1813869165 2951246 1008 276 1526 433 Unrestricted 16.65 Metagenome 3300029741 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37296R1 Beijing Genomics Institute (BGI) 3300029741 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 194756924 239531 159 2 211 2 0.0 Metagenome 3300005089 *Microbiome Permanent Draft Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich - 42s-100 University of Cincinnati 3300005089 Metagenome Analysis Velvet v. 0.7.57 released per JGI data release policy No Yes rlamendella@lbl.gov Regina Lamendella No Environmental Aquatic Groundwater Freshwater Contaminated Groundwater 40.0 -74.5 0 0 0 0 0 0 0.0 Metagenome 3300020022 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - U1s2 DOE Joint Genome Institute (JGI) 3300020022 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9223 -106.9536 379510052 828559 281 16 648 24 SRX3958580, SRX3958579 Unrestricted 0.0 Metagenome 3300030040 *Microbiome Permanent Draft Human fecal microbial community of Hadza hunter-gatherer and regular subjects from Tanzania and Italy Human fecal microbial community of Hadza hunter-gatherer populations from Tanzania - 10024 University of Bologna 3300030040 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal -3.6347588 35.0828588 207348758 307431 223 1 326 2 0.0 Metagenome 3300009305 *Microbiome Permanent Draft Anaerobic oil degrading microbial communities from River Tyne estuarine sediment Microbial communities from sediment of the River Tyne Estuary, UK - Pasteurized_686d_2 SPAdes University of Liverpool 3300009305 Metagenome Analysis SPAdes released per JGI data release policy No Yes ian.head@ncl.ac.uk, ian.head@ncl.ac.uk; ana.suarez-suarez@ncl.ac.uk Ian Head, Ian Head; Ana Suarez-Suarez No Environmental Aquatic Unclassified Sediment Unclassified sediment 54.9632021 -1.6348029 253607267 510958 143 1 213 3 0.0 Metagenome 3300034161 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_18 DOE Joint Genome Institute (JGI) 3300034161 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9096 -147.9451 455296006 1120689 436 22 790 29 SRX7633914 Unrestricted 8.85 Metagenome 3300012102 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ010 MetaG DOE Joint Genome Institute (JGI) 3300012102 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.7092 -74.6642 63043697 113744 17 81 22 157 SRX3539438 Unrestricted 0.0 Metagenome 3300056729 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.18W.10 SIP fraction DOE Joint Genome Institute (JGI) 3300056729 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 178266107 319831 127 30 214 49 Unrestricted 13.46 Metagenome 7000000358 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764447348 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000358 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 66138844 112845 0 0 0 0 0.0 Metagenome 3300038460 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-2-D (v2) (version 2) DOE Joint Genome Institute (JGI) 3300038460 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 725974876 1563548 523 6 908 9 SRX8137902, SRX8137901 Unrestricted 0.0 Metagenome 3300005067 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Hydrocarbon microbial Community from Halfdan Field, North Sea, Denmark - MHDA5 Shell Corporation 3300005067 Metagenome Analysis megahit Released on PI's request No Yes ebalsop@lbl.gov Eric Alsop No Environmental Aquatic Deep subsurface Marine Hydrocarbon Water 55.49 7.42 327282741 800011 2369 18 3524 28 0.0 Metagenome 3300042566 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME22Jul2008-rr0620 DOE Joint Genome Institute (JGI) 3300042566 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 708896912 1142869 334 41 430 63 Unrestricted 22.06 Metagenome 3300069521 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_059-O-20170718-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069521 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 40041896 107404 67 7 136 16 0.0 Metagenome 3300040457 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 088_R1_022417 University of Maryland 3300040457 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.69636111 27.07972222 3424026 8141 7 0 14 0 0.0 Metagenome 3300002407 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 DOE Joint Genome Institute (JGI) 3300002407 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 669300953 1580642 1063 4 1789 7 SRX1990954 Unrestricted 0.0 Metagenome 7000000519 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160178356 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000519 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 91884387 171559 0 0 0 0 0.0 Metagenome 3300031547 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4 DOE Joint Genome Institute (JGI) 3300031547 Metagenome Analysis spades v. 3.12.0 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Bulk soil soil 39.6475 -79.9369 2060393394 5152793 1368 44 2572 68 SRX5661802 Unrestricted 7.56 Metagenome 3300027510 *Microbiome Permanent Draft Biogas fermentation microbial communities from biogas plants in Germany Biogas fermentation microbial communities from Germany - Plant 4 DNA1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027510 Metagenome Analysis spades v. 3.11.1 Yes Yes asczyrba@techfak.uni-bielefeld.de Alexander Sczyrba Yes 27462367 Engineered Bioreactor Digestate Anaerobic Unclassified Biogas fermentantion 52.0385 8.4956 7.8 396070037 606795 522 8 714 22 SRX1598073 Unrestricted 0.0 Metagenome 7000000646 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 764325968 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000646 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 119164334 176171 0 0 0 0 0.0 Metagenome 3300043504 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime ecozone, Canada - Lake 07-243 Genome Quebec 3300043504 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.722618 -63.551142 953339206 1918886 452 133 640 267 0.0 Metagenome 3300041034 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - AD8 IDBA-UD 60x Baseclear 3300041034 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 81674603 135481 81 2 183 1 0.0 Metagenome 3300014808 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS66_3 University of Hohenheim 3300014808 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 152219093 255546 73 2 125 0 0.0 Metagenome 3300005947 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190 DOE Joint Genome Institute (JGI) 3300005947 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Permafrost Soil 68.6137 -149.3144 604784549 1731078 466 11 793 20 SRX2739470 Unrestricted 0.0 Metagenome 3300046479 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvC-P(3) 20-24 DOE Joint Genome Institute (JGI) 3300046479 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.355 19.0438 735213126 1015831 154 3 245 3 Restricted 14.13 Metagenome 3300005316 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila falleni male 2 gut Cornell University 3300005316 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy No Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila falleni male adult gut 43.025606 -77.572811 116524290 276534 57 25 94 34 0.0 Metagenome 3300041811 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - C_27_wk_4 DOE Joint Genome Institute (JGI) 3300041811 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.8816 -106.962 121983828 384603 273 10 514 17 SRX14808524 Unrestricted 7.67 Metagenome 3300036817 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in New South Wales, Australia - Pi_7 DOE Joint Genome Institute (JGI) 3300036817 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil -34.5 150.0 1773346015 2943004 395 80 672 124 SRX8386442 Unrestricted 16.75 Metagenome 3300003739 *Microbiome Permanent Draft Bathymodiolus azoricus thiotrophic symbiont SOX Bathymodiolus azoricus thiotrophic symbiont SOX Max Planck Institute 3300003739 Metagenome Analysis SPades V3.1 released per JGI data release policy No Yes lsayaved@mpi-bremen.de Lizbeth Sayavedra No Host-associated Mollusca Gills Respiratory system Intracellular Hydrotherlmal Vent 37.28806 -32.27557 2479947 3050 1 0 1 0 0.0 Metagenome 3300012879 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - DID2937_E24_Xylan MG DOE Joint Genome Institute (JGI) 3300012879 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie Yes 29545786 Environmental Terrestrial Grasslands Soil Unclassified soil 43.073 -89.4011 226810859 337114 158 1 235 3 SRX3565013 Unrestricted 0.0 Metagenome 3300043007 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - Beaver2Rectum1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043007 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Rectum rectum 49.18 -122.54 70954198 142083 164 8 295 11 SRX8345783 Unrestricted 63.02 Metagenome 3300042314 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Jun2015-rr0611 DOE Joint Genome Institute (JGI) 3300042314 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 746309336 1148325 291 43 392 63 Unrestricted 20.95 Metagenome 3300064823 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 681 in Dapp, Alberta, Canada - S00JY_0137 Microbiome Insights 3300064823 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 54.22361285 -113.5355333 3372733 5380 12 0 25 0 0.0 Metagenome 3300023198 *Microbiome Permanent Draft Sediment microbial communities from Stefan Fjord, Tortel, Patagonia, Chile Sediment microbial communities from Stefan Fjord, Tortel, Patagonia, Chile - Sample 5 University of Bristol 3300023198 Metagenome Analysis SPADES v. 3.11.1 released by JGI data releasing policy No Yes maisie.nash@bristol.ac.uk Maisie Nash No Environmental Aquatic Unclassified Sediment Unclassified sediment -47.787717 -73.608533 7.651 268241056 303977 31 5 28 4 0.0 Metagenome 3300070417 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lajas Experimental Station, Puerto Rico, USA - LAJA_051-M-20171127-COMP-DNA1 3300070417 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 75493580 221818 134 4 259 11 0.0 Metagenome 3300002562 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm DOE Joint Genome Institute (JGI) 3300002562 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.718176 -123.652732 518915676 1127421 88 9 347 17 SRX1991088, SRX1991089 Unrestricted 0.0 Metagenome 3300052656 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from Gulf of California, Mexico - CTD-FK190211-01-585m-0.1 DOE Joint Genome Institute (JGI) 3300052656 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 27.00134 -111.41153 1637428 3208 10 0 21 1 Restricted 0.0 Metagenome 3300013730 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Aquatic prokaryotic and eukaryotic communities from a canal in New York, USA: aquatic canal water -GCSS-14 Weill Cornell Medical College 3300013730 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Unclassified Canal Unclassified Aquatic canal 40.67 -73.99 13987978 41499 48 10 99 9 SRX823488 0.0 Metagenome 3300026182 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF49B (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026182 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 208167660 425153 126 81 216 145 SRX2781817 Unrestricted 0.0 Metagenome 3300010156 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom. Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel2S_0400h metaG DOE Joint Genome Institute (JGI) 3300010156 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rmmckay@bgsu.edu Robert M. McKay No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.69957 -83.2941 77730645 184817 73 25 125 43 SRX3195500 Unrestricted 0.0 Metagenome 3300005564 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG DOE Joint Genome Institute (JGI) 3300005564 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 5377602509 15314868 3898 204 6442 389 SRX2740168 Unrestricted 0.0 Metagenome 3300007033 *Microbiome Permanent Draft Non-marine hypersaline water microbial communities from Salinas de A?ana, Spain Non-marine hypersaline water microbial communities from A?ana, Logro?o, Spain - Cell_A?ana_2 University of Alicante 3300007033 Metagenome Analysis IDBA 1.1.1 PRE correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified hypersaline water 42.80111387 -2.985507 54893589 106637 68 6 104 7 0.0 Metagenome 3300032116 *Microbiome Permanent Draft Freshwater fungal communities from various locations Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119 DOE Joint Genome Institute (JGI) 3300032116 Metagenome Analysis spades v. 3.12.0 Yes Yes tyjames@umich.edu Timothy Y. James No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.7464 -83.3444 2482443110 5136224 845 119 1290 214 SRX6420479 Unrestricted 23.91 Metagenome 3300044837 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_39BD DOE Joint Genome Institute (JGI) 3300044837 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.5132 -106.0526 677595377 1128279 320 35 475 57 SRX20649793 Unrestricted 14.38 Metagenome 3300001168 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M1 DOE Joint Genome Institute (JGI) 3300001168 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 14130027 41375 96 15 156 20 SRX3311926 Unrestricted 0.0 Metagenome 3300003905 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius albidus HERON ISLAND.1 DOE Joint Genome Institute (JGI) 3300003905 Metagenome Analysis Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 53.109679 8.847516 504113467 1214246 3 2 4 5 SRX2577501 Unrestricted 0.0 Metagenome 3300035035 *Microbiome Permanent Draft Marine planktonic microbial communities from Bay of Bengal, Indian Ocean Marine planktonic microbial communities from Bay of Bengal, Indian Ocean - 3T (SRX5580384-SRR8790591) Nanyang Technological University 3300035035 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released by JGI data releasing policy Yes Yes flauro@ntu.edu.sg Federico Lauro No Environmental Aquatic Unclassified Marine Unclassified Marine planktonic 5.96 89.47 820981182 1898698 581 392 956 586 0.0 Metagenome 3300017425 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_NF_03OCT2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017425 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 238489202 423355 27 79 47 103 SRX3927694 Unrestricted 9.41 Metagenome 3300017990 *Microbiome Permanent Draft Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_S_2 metaG DOE Joint Genome Institute (JGI) 3300017990 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes valentine@geol.ucsb.edu David Valentine No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Sediment Hypersaline lake sediment 33.3 -115.8 2505008596 5174855 1715 46 2923 70 SRX3905692 Unrestricted 6.01 Metagenome 3300005231 *Microbiome Permanent Draft Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich - 42s-99 University of Cincinnati 3300005231 Metagenome Analysis Velvet v. 0.7.57 released per JGI data release policy No Yes rlamendella@lbl.gov Regina Lamendella No Environmental Aquatic Groundwater Freshwater Contaminated Groundwater 40.0 -74.5 0 0 0 0 0 0 0.0 Metagenome 3300044511 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Towuti Lake, South Sulawesi, Indonesia - Towuti_110m_2014 DOE Joint Genome Institute (JGI) 3300044511 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.7 121.4 849179971 1390828 550 19 817 30 Unrestricted 19.13 Metagenome 3300034390 *Microbiome Permanent Draft Metagenomic SGS 2x251 Cornfield soil microbial communities from Madison, WI, USA - CF2 Illumina 3300034390 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Agricultural land Soil 43.056543 -89.477477 1995849261 5546091 621 15 1074 28 0.0 Metagenome 3300009150 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from South Atlantic Ocean to uncover new lineages of life (NeLLi) - Benguela_00093 metaG DOE Joint Genome Institute (JGI) 3300009150 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes eaeloefadrosh@lbl.gov, EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Oceanic Marine Sediment Deep subsurface -27.74 14.251 1995557452 4084542 1671 8 2791 24 SRX2524357 Unrestricted 0.0 Metagenome 3300003225 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO21-D DOE Joint Genome Institute (JGI) 3300003225 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 186928 634 12 3 22 7 SRX2575535 Unrestricted 0.0 Metagenome 3300029192 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011706-62 Beijing Genomics Institute (BGI) 3300029192 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 101287069 128853 91 0 124 0 0.0 Metagenome 3300008384 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 404239096 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008384 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 13442498 27280 15 0 21 5 SRX024100 0.0 Metagenome 3300026251 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_D2_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026251 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe No Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4961 -122.1331 607470149 1188274 545 13 854 13 SRX3203252 Unrestricted 0.0 Metagenome 3300001115 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP1787 DOE Joint Genome Institute (JGI) 3300001115 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 9.22 -163.53 34401031 81470 45 2 72 11 SRX1982299 Unrestricted 0.0 Metagenome 3300037802 *Microbiome Permanent Draft Seawater and sediment microbial communities from various locations Seawater microbial communities from eastern tropical North Pacific Ocean - AMALJGI-DNA-18 DOE Joint Genome Institute (JGI) 3300037802 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bbw@princeton.edu Bess Ward No Environmental Aquatic Oceanic Marine Unclassified seawater 18.0 -102.0 307143272 689672 427 103 624 155 SRX9401151 Unrestricted 10.64 Metagenome 3300007999 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Jinze hot spring, China to study Microbial Dark Matter (Phase II) - JNZ 110809A DOE Joint Genome Institute (JGI) 3300007999 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes brian.hedlund@unlv.edu, brian.hedlund@unlv.edu; rstepanauskas@bigelow.org Brian P. Hedlund, Brian Hedlund; Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring 25.4413 98.46 6.71 218561379 454360 262 0 403 2 SRX2753918 Unrestricted 0.0 Metagenome 3300060587 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210609_13_01 DOE Joint Genome Institute (JGI) 3300060587 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 309591178 444009 149 67 185 102 Unrestricted 34.05 Metagenome 3300051222 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf microbial communities from Olympic Peninsula, Washington, USA - D0_SEK2_3 DOE Joint Genome Institute (JGI) 3300051222 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Alder tree leaf 48.165 -124.245 337126328 377006 20 12 51 13 Unrestricted 51.02 Metagenome 3300012135 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Georgia, USA - TSGA066 MetaG DOE Joint Genome Institute (JGI) 3300012135 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 32.8826 -81.9512 144761808 248477 85 52 137 127 SRX3539685 Unrestricted 0.0 Metagenome 3300005380 *Microbiome Permanent Draft Marine microbial communities from Deepwater Horizon subsurface plume in Gulf of Mexico Marine microbial communities from Deepwater Horizon subsurface plume in Gulf of Mexico, 16-5 In Plume DOE Joint Genome Institute (JGI) 3300005380 Metagenome Analysis Rnnotater No Yes rivers@uga.edu Adam R. Rivers, Adam Rivers Yes 23902988 Environmental Aquatic Hydrothermal vents Marine Black smokers Subsurface plume 28.716667 -88.466667 73128958 114085 3 1 4 1 0.0 Metagenome 3300069566 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_005-M-20170626-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069566 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 17671814 52817 54 0 120 0 0.0 Metagenome 3300017694 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_03OCT2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017694 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 266313493 522493 270 182 427 284 SRX3927016 Unrestricted 6.44 Metagenome 3300042521 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Aug2014-rr0660 DOE Joint Genome Institute (JGI) 3300042521 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1429516261 2210562 491 108 676 157 Unrestricted 15.96 Metagenome 3300053112 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 endosphere DOE Joint Genome Institute (JGI) 3300053112 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.120839 -123.269219 375527539 478544 56 57 73 102 Unrestricted 17.71 Metagenome 3300070538 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from North Sterling, Colorado, USA - STER_010-M-20170606-COMP-DNA1 Battelle Memorial Institute 3300070538 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Agricultural land Soil Unclassified Terrestrial soil 40.460611 -103.030496 6.99-8.46 4424161 13428 35 1 48 1 0.0 Metagenome 3300027586 *Microbiome Permanent Draft Freshwater lentic microbial communities from the great Laurentian Lakes, MI, USA for biogeochemical studies Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes) DOE Joint Genome Institute (JGI) 3300027586 Metagenome Analysis spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified Freshwater lentic 44.701094 -82.854085 357891492 781947 203 22 278 35 SRX2577338 Unrestricted 0.0 Metagenome 3300012548 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100529 University of Pennsylvania 3300012548 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 7242504 20301 47 14 85 27 SRX756225 0.0 Metagenome 3300049211 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - F7_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049211 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 346520540 775726 431 6 730 13 Unrestricted 0.0 Metagenome 3300041418 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P10_D10 (version 2) DOE Joint Genome Institute (JGI) 3300041418 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 698929105 1008962 232 4 346 5 SRX10167076 Unrestricted 0.0 Metagenome 3300007141 *Microbiome Permanent Draft Cephalotes ants gut microbiomes Ant gut microbial communities from Cephalotes maculatus, Brazil Harvard University 3300007141 Metagenome Analysis IDBA-UD released by Yi Hu Yes Yes pl356@drexel.edu, yihu.bnu@gmail.com Piotr Lukasik, Yi Hu No Host-associated Arthropoda: Insects Gut Digestive system Unclassified ant gut -19.11 -48.24 143829001 306257 41 1 65 1 0.0 Metagenome 3300007867 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159632143 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007867 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 41488975 94598 43 0 61 2 0.0 Metagenome 3300045279 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_4_B DOE Joint Genome Institute (JGI) 3300045279 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 182400666 214341 109 1 126 2 Unrestricted 128.91 Metagenome 3300003338 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Colorado-Nebraska, USA - DC3-106 DOE Joint Genome Institute (JGI) 3300003338 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 15186468 31634 34 13 28 36 SRX2770438 Unrestricted 0.0 Metagenome 3300015367 *Microbiome Permanent Draft Danish lakes Microbial communities Depth profiles Lake Almind and Hund Freshwater microbial communities from Lake Hund, Silkeborg, Region Midtjylland, Denmark - HUS_14.08.12_6m metaSPAdes assemblies Odense University Hospital 3300015367 Metagenome Analysis metaSPAdes 3.7.1 released by JGI data releasing policy Yes Yes atreusch@biology.sdu.dk Alexander Treusch No Environmental Aquatic Lake Freshwater Unclassified Freshwater 56.04 9.54 5.8 73549500 235127 54 5 133 9 0.0 Metagenome 3300011142 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01003 Weill Cornell Medical College 3300011142 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.6 -73.81 24297782 38928 21 0 28 0 SRX822965 0.0 Metagenome 3300044751 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 329-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044751 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9532 -107.0673 519252122 1395744 386 16 699 27 Unrestricted 6.63 Metagenome 3300007889 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 765094712 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007889 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 485383 1230 2 0 8 0 SRX024045 0.0 Metagenome 3300056922 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M2L_40_42 DOE Joint Genome Institute (JGI) 3300056922 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0084363 -81.5683388 793446232 1356587 477 2 833 6 Unrestricted 13.33 Metagenome 3300049144 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S29_C_D89 hydrophobic DOE Joint Genome Institute (JGI) 3300049144 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 326435696 522368 157 5 232 5 Unrestricted 40.45 Metagenome 3300001447 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN95 DOE Joint Genome Institute (JGI) 3300001447 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Temperate forest Soil Unclassified Forest Soil 39.23550963 -121.2836963 805505 2802 40 1 59 4 SRX3311734, SRX3311733 Unrestricted 0.0 Metagenome 3300031660 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from Ellis Fjord, Antarctic Ocean - #261 DOE Joint Genome Institute (JGI) 3300031660 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5958 78.1913 575028230 1101888 306 89 384 164 SRX5650042 Unrestricted 20.47 Metagenome 3300034126 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_16 DOE Joint Genome Institute (JGI) 3300034126 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9142 -147.835 425501542 1067970 507 20 829 33 SRX7633790 Unrestricted 6.74 Metagenome 3300013414 *Microbiome Permanent Draft Rat cecal microbial communities from salt sensitive Rats, Toledo, Ohio, USA Rat cecal microbial community from a salt sensitive rat, Toledo, Ohio, USA - rat 1 University of California, Davis 3300013414 Metagenome Analysis MegaHit released per PI's request No Yes mclimcj13@juniata.edu Christopher McLimans No Host-associated Mammals Large intestine Digestive system Cecum Rat Cecum 41.6639 -83.5552 496969192 841529 532 2 795 4 0.0 Metagenome 3300009332 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 314m, 2.7-0.2um, replicate b Georgia Genomics Facility 3300009332 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 337463778 417918 163 2 199 0 0.0 Metagenome 3300043771 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 012-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043771 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9218 -106.9521 613005080 1540111 454 26 942 39 Unrestricted 7.94 Metagenome 3300027058 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027058 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 117362153 307305 279 94 510 161 SRX3311923 Unrestricted 0.0 Metagenome 3300038853 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample20 King Abdulaziz City for Science and Technology (KACST) 3300038853 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 20.31 38.46 33858070 96295 57 0 111 0 SRX1097586 0.0 Metagenome 3300039346 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 265_4M Beijing Genomics Institute (BGI) 3300039346 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 14792408 18381 13 0 16 0 ERX491042 0.0 Metagenome 3300039917 *Microbiome Permanent Draft Industrial fuel microbial communities from aircraft samples near Hamburg, Germany Industrial fuel microbial communities from aircraft samples near Hamburg, Germany - 170807_BF_02 re-assembly HPI Heinrich-Pette-Institut 3300039917 Metagenome Analysis metaSpades v. 3.1 released by Ines Krohn-Molt No Yes wolfgang.streit@uni-hamburg.de; ines.krohn@uni-hamburg.de Wolfgang Streit; Ines KROHN No Engineered Industrial production Unclassified Engineered product Unclassified Industrial fuel 53.338 9.5152 96316795 105682 11 5 18 4 0.0 Metagenome 3300006927 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG DOE Joint Genome Institute (JGI) 3300006927 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -13.003 -80.809 358231583 811076 37 0 49 2 SRX2926261 Unrestricted 0.0 Metagenome 3300017692 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_03OCT2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017692 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 246524011 511534 265 176 405 318 SRX3927018 Unrestricted 6.29 Metagenome 3300043148 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - HN_050217 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043148 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.9002 -89.3556 50530563 125251 108 13 189 27 SRX9381674 Unrestricted 32.93 Metagenome 3300053114 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 endosphere DOE Joint Genome Institute (JGI) 3300053114 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.587702 -123.193614 413019024 594798 131 90 179 155 Unrestricted 11.66 Metagenome 3300047331 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Frasne, France - Sphagnum fallax 9C_SF_FR DOE Joint Genome Institute (JGI) 3300047331 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 1104362215 1907471 424 122 639 221 SRX14787459 Unrestricted 9.0 Metagenome 3300002380 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 06JUL2010 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002380 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 25334156 67685 46 25 88 39 SRX1988892 Unrestricted 0.0 Metagenome 3300045521 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_2_A DOE Joint Genome Institute (JGI) 3300045521 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 165040813 199611 102 1 90 2 Unrestricted 123.43 Metagenome 3300039059 *Microbiome Permanent Draft Lettuce associated viral communities from produce distribution center in Michigan, USA Iceberg lettuce associated viral communities from produce distribution center in Michigan, USA - FI11 Michigan State University 3300039059 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Iceberg lettuce 390171 674 5 2 10 1 SRX1427001 0.0 Metagenome 3300051224 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_RHK2_3_to_SEK2 DOE Joint Genome Institute (JGI) 3300051224 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.245 298526279 399250 85 42 111 71 Unrestricted 12.65 Metagenome 3300041005 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-10-1_at_0-1_cm Genome Quebec 3300041005 Metagenome Analysis megahit v. 1. released by JGI data releasing policy No Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.88147 -73.76618 436028178 1169831 716 47 1465 75 0.0 Metagenome 3300011211 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01264 Weill Cornell Medical College 3300011211 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.58 -73.97 34646551 50865 18 1 31 2 SRX823216 0.0 Metagenome 7000000650 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160421117 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000650 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 112541914 207912 0 0 0 0 0.0 Metagenome 3300043535 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains ecozone, Canada - Lake 08-206 Genome Quebec 3300043535 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.231341 -81.531897 1128791859 2505147 548 153 870 348 0.0 Metagenome 3300006207 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - GF1 control_feces - viral_metagenome University of Texas Southwestern Medical Center 3300006207 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 1603376 5361 4 1 9 4 0.0 Metagenome 3300027659 *Microbiome Permanent Draft Freshwater lentic microbial communities from the great Laurentian Lakes, MI, USA for biogeochemical studies Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes) DOE Joint Genome Institute (JGI) 3300027659 Metagenome Analysis spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified Freshwater lentic 44.701094 -82.854085 393883362 870414 129 8 192 11 SRX2577339 Unrestricted 0.0 Metagenome 3300013121 *Microbiome Permanent Draft Activated sludge microbial communities from Jimei wastewater treatment plant (WWTP), Xiamen City, Fujian province, China Activated sludge microbial communities from Jimei wastewater treatment plant (WWTP), Xiamen City, Fujian province, China Beijing Novogene Bioinformatics Technology Co., Ltd 3300013121 Metagenome Analysis MegaHit released by JGI data releasing policy No Yes fguo.bio@xmu.edu.cn Feng Guo No Engineered Wastewater Unclassified Activated Sludge Unclassified activated sludge 24.25 117.57 167292447 160307 39 0 36 0 0.0 Metagenome 3300042279 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA MBR feed microbial communities from membrane bioreactor in Denver, Colorado, USA - FD_D263 DOE Joint Genome Institute (JGI) 3300042279 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Wastewater Mine water Industrial wastewater Produced water MBR feed 39.7823 -104.9101 574005964 851032 454 3 642 6 Unrestricted 19.52 Metagenome 3300021583 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - E2014-0102-100LTR University of Michigan 3300021583 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified freshwater lake 41.703267 -83.258317 93398615 190622 23 55 34 74 0.0 Metagenome 3300041793 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - A_35_wk_3 DOE Joint Genome Institute (JGI) 3300041793 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9785 -106.974 104115070 333200 245 9 458 11 SRX14808351 Unrestricted 6.85 Metagenome 3300027985 *Microbiome Permanent Draft Black smoker hydrothermal vent sediment microbial communities from the Guaymas Basin, Mid-Atlantic Ridge, South Atlantic Ocean Black smoker hydrothermal vent sediment microbial communities from the Guaymas Basin, Mid-Atlantic Ridge, South Atlantic Ocean - BSmoChi-MAR-TVG12 Beijing Genomics Institute (BGI) 3300027985 Metagenome Analysis idba_ud v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Hydrothermal vents Marine Black smokers hydrothermal vents -15.160005 -13.350021 2983016757 3591198 1266 27 1665 32 0.0 Metagenome 3300007778 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_H2O_MG DOE Joint Genome Institute (JGI) 3300007778 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Water 37.4965 -122.1329 415175085 903882 634 55 1125 98 SRX2523923 Unrestricted 0.0 Metagenome 3300038591 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from Daisy Lake, Ontario, Canada Freshwater lake sediment microbial communities from Daisy Lake, Ontario, Canada - A41 University of Cambridge 3300038591 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 46.27199 -80.52479 27224857 64307 61 2 117 2 0.0 Metagenome 3300003117 *Microbiome Permanent Draft Continuous culture Bioreactor microbial community inoculated with sediment from German Wadden Sea Bioreactor microbial community inoculated from Wadden Sea, Germany - 82 days of incubation Bielefeld University, Max Planck Institute for Marine Microbiology 3300003117 Metagenome Analysis MetaVelvet v. v0.3 Made public because these are downloaded from Genbank No Yes mstrous@mpi-bremen.de Marc Strous Yes 23227024 Engineered Bioreactor Marine sediment inoculum Continuous culture Unclassified Continuous culture Bioreactor 54.537548 8.400555 15967674 20438 18 0 34 0 0.0 Metagenome 3300049142 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S29_A_D89 hydrophobic DOE Joint Genome Institute (JGI) 3300049142 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 371938669 575669 173 9 235 20 Unrestricted 36.3 Metagenome 3300012367 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100749 University of Pennsylvania 3300012367 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 691285 1789 5 1 5 5 SRX756101 0.0 Metagenome 3300046025 *Microbiome Permanent Draft Halite microbial communities from Atacama Desert, Chile Halite microbial communities from Alma, Atacama Desert, Chile - AL1 Novogene 3300046025 Metagenome Analysis metaWRAP v. 1.3.2 No Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Halite Rock-dwelling (endoliths) Unclassified Halite -23.076 -67.982 110575580 134277 13 2 13 1 0.0 Metagenome 3300038309 *Microbiome Permanent Draft Marine sediment microbial communities from New Orleans, USA to study impact of Deep Water Horizon explosion Marine sediment microbial communities from Barataria Bay, New Orleans, USA to study impact of Deep Water Horizon explosion - O9803rep Battelle Memorial Institute 3300038309 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Coastal Marine Sediment Marine sediment 29.456 -89.883 212607576 451590 226 14 502 17 0.0 Metagenome 3300011144 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00848 Weill Cornell Medical College 3300011144 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.71 -74.0 26314464 41814 11 0 26 0 SRX822814 0.0 Metagenome 3300001227 *Microbiome Permanent Draft Switchgrass rhizosphere microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere microbial communities from Knoxville, Tennessee, USA - P9 rhizosphere metagenome combined University of Tennessee 3300001227 Metagenome Analysis released per JGI data release policy No Yes jwang43@utk.edu Jun Wang No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 35.9606 -83.9208 9893464 52750 53 6 137 9 0.0 Metagenome 3300012016 *Microbiome Permanent Draft Ruminant gut microbial communities from various locations in USA Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1397 University of Missouri 3300012016 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen 41.314168 -105.584589 557664762 1022202 233 12 463 18 SRX331736 0.0 Metagenome 3300013412 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100180 University of Pennsylvania 3300013412 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12024141 27047 12 2 27 3 SRX756353 0.0 Metagenome 3300035507 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - Beaver3Rectum1 DOE Joint Genome Institute (JGI) 3300035507 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Rectum rectum 49.18 -122.54 805446569 1364923 645 11 883 27 SRX8345900 Unrestricted 9.52 Metagenome 2020627003 *Microbiome Draft Benzene-degrading bioreactor microbial communities from Toronto, Ontario, Canada, that are methanogenic Benzene-degrading bioreactor microbial communities from Toronto, Ontario, Canada, that are methanogenic - September 2009 gDNA_4 v1 DOE Joint Genome Institute (JGI) 2020627003 Metagenome Analysis lucy / pga released based on JGI ITS No Yes sgtringe@lbl.gov, elizabeth.edwards@utoronto.ca Susannah Tringe, Elizabeth A. Edwards No Engineered Bioremediation Benzene Hydrocarbon Bioreactor Benzene-degrading bioreactor 43.658712 -79.396003 33465768 52548 7 0 21 0 Unrestricted 0.0 Metagenome 3300030056 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3 DOE Joint Genome Institute (JGI) 3300030056 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 1025733061 2128249 316 42 461 64 SRX5355635 Unrestricted 13.18 Metagenome 3300014237 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 261_L1_2014-9-12 San Diego State University 3300014237 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 1012112 2847 11 6 19 17 0.0 Metagenome 3300001907 *Microbiome Permanent Draft Contaminated subsurface sediment microbial communities from Dusseldorf, Germany, analyzing toluene degradation Contaminated subsurface sediment microbial communities from Dusseldorf, Germany, analyzing toluene degradation - Fos_Dus_104 3300001907 Metagenome Analysis de novo assembly algorithm of CLC Genomics Workbench released by JGI data releasing policy No Yes emnabouhajja@gmail.com Emna Bouhajja No Environmental Terrestrial Sediment Geologic Unclassified Contaminated subsurface sediment 51.21 6.46 28526 39 0 0 0 0 0.0 Metagenome 3300001691 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A5-12 DOE Joint Genome Institute (JGI) 3300001691 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 217372 779 19 3 47 0 SRX1990529 Unrestricted 0.0 Metagenome 2149837023 *Microbiome Permanent Draft Human fecal microbial communities from the University of Arizona, for HMP training Human fecal microbial communities from the University of Arizona (HMP) - UAm1 Chinese National Human Genome Center, Beijing 2149837023 Metagenome Analysis released per JGI data release policy No Yes mbsulli@email.arizona.edu, mbsulli@gmail.com Matthew Sullivan No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 32.23 -110.95 82040814 102766 458 1 645 0 0.0 Metagenome 3300024039 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-277 DOE Joint Genome Institute (JGI) 3300024039 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Unclassified Plant litter Unclassified leaf litter 40.2198 -122.9842 67504605 121607 14 18 21 30 SRX4392087 Unrestricted 60.69 Metagenome 3300012788 *Microbiome Permanent Draft Guam Dysideidae Sponge Holobiont Metagenomes Dysideidae sponge tissue microbial communities from Piti Bomb Holes, Guam, USA - GUM102 University of California, San Diego, Scripps Institute of Oceanography 3300012788 Metagenome Analysis IDBA-UD v 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton Yes 28319100, 32576248 Host-associated Porifera Unclassified Sponge Unclassified sponge tissue 13.345738 144.638186 263461071 233487 2 7 2 9 SRX2617295 0.0 Metagenome 3300042312 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME12Oct2007-rr0556 DOE Joint Genome Institute (JGI) 3300042312 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 679635125 1076073 315 31 437 39 Unrestricted 19.11 Metagenome 3300055348 *Microbiome Permanent Draft Co-cultures of unialgal cyanobacteria with co-existing heterotrophic bacteria from Dresden University of Technology, Germany Co-culture of unialgal cyanobacterium with co-existing heterotrophic bacterium from Dresden University of Technology, Germany - Nostoc_40.5/Streptobacillus DOE Joint Genome Institute (JGI) 3300055348 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes paul.dagostino@tu-dresden.de Paul M. D'Agostino No Host-associated Microbial Unclassified Bacteria Unclassified Lab culture 51.028586 13.73135 92253764 90393 41 0 41 0 Restricted 95.23 Metagenome 3300001036 *Microbiome Permanent Draft Grassland microbial communities from Loma Ridge, Irvine, California, USA, for plant litter decomposition studies Grassland microbial communities from Loma Ridge, Irvine, California, USA, for plant litter decomposition studies - fosmids DOE Joint Genome Institute (JGI) 3300001036 Metagenome Analysis released per Simon -- IMGSUPP2953 No Yes sgtringe@lbl.gov, sgtringe@lbl.gov; ELBrodie@lbl.gov Susannah Tringe, Susannah Tringe; Eoin Brodie No Environmental Terrestrial Grasslands Soil Unclassified Grassland 33.742 -117.7032 6514843 6182 13 3 12 3 0.0 Metagenome 3300043467 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME31May2015-rr0313 DOE Joint Genome Institute (JGI) 3300043467 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 677519920 1022681 161 28 209 32 Unrestricted 21.85 Metagenome 3300026184 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_D_shore_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026184 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4958 -122.1331 311291575 583205 247 2 421 4 SRX2523669 Unrestricted 0.0 Metagenome 3300057125 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2020-0052 DOE Joint Genome Institute (JGI) 3300057125 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.70406 -83.25291 447901490 947355 353 161 557 243 Unrestricted 13.91 Metagenome 3300060747 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Chase Lake Wetlands, North Dakota, USA - WOOD_005-M-20210708-comp-1 DOE Joint Genome Institute (JGI) 3300060747 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 47.149339 -99.251928 1834279261 3312166 688 33 1172 40 Unrestricted 17.59 Metagenome 3300005562 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - As.Ma.e DOE Joint Genome Institute (JGI) 3300005562 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes avisel@lbl.gov, laila.partida@cinvestav.mx Axel Visel, Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.7658 -100.163 3006819398 10463100 2325 765 4353 1347 SRX2124717 Unrestricted 0.0 Metagenome 3300000283 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM238 Beijing Genomics Institute (BGI), Macrogen 3300000283 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 40876228 52998 128 0 151 0 0.0 Metagenome 3300014026 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S17-03-R University of California, Los Angeles 3300014026 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 199400361 269608 150 1 182 1 SRX862796 0.0 Metagenome 3300070306 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_007-M-20160928-COMP-DNA2 3300070306 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 64553466 186756 125 5 262 3 0.0 Metagenome 3300005870 *Microbiome Permanent Draft Rhizosphere and bulk soil microbial communities from Harvard Forest, USA Rhizosphere microbial communities from Harvard Forest, USA - 4Rhizosphere_NRpos metaG DOE Joint Genome Institute (JGI) 3300005870 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes deangelis@microbio.umass.edu Kristen M DeAngelis PhD, Kristen M. DeAngelis PhD No Host-associated Plants Rhizosphere Roots Soil rhizosphere 42.5502 -72.1737 5106579 21404 21 6 41 10 SRX2718162 Unrestricted 0.0 Metagenome 3300031962 *Microbiome Permanent Draft Hardwood forest soil microbial communities from various locations in the United States Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515 DOE Joint Genome Institute (JGI) 3300031962 Metagenome Analysis spades v. 3.12.0 Yes Yes jdraff@indiana.edu Jonathan Raff No Environmental Terrestrial Temperate forest Soil Bulk soil hardwood forest soil 39.0844 -86.4705 3836072190 8123045 1196 35 1955 76 SRX6409985 Unrestricted 9.84 Metagenome 3300035116 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 DOE Joint Genome Institute (JGI) 3300035116 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1125 -122.987 1146318111 2871549 790 73 1413 131 SRX8289463 Unrestricted 6.96 Metagenome 3300027746 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027746 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 45.4091 -72.0994 745812748 1425588 328 42 473 89 SRX2996445 Unrestricted 0.0 Metagenome 3300002564 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-312 DOE Joint Genome Institute (JGI) 3300002564 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.290565 -156.788622 309226750 637441 216 0 385 1 SRX1990906 Unrestricted 0.0 Metagenome 3300024993 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG05_land_8/20/14_0.10 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300024993 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 68467830 178567 126 25 208 49 SRX3348124 Unrestricted 0.0 Metagenome 3300043489 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-298 Genome Quebec 3300043489 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.903076 -98.035665 1309402011 3115246 745 179 1236 334 0.0 Metagenome 3300020527 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020527 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 98789263 219287 89 11 167 18 SRX1989911 Unrestricted 0.0 Metagenome 3300050456 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - W5NW16 DOE Joint Genome Institute (JGI) 3300050456 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 226085712 409827 241 53 451 73 Unrestricted 16.02 Metagenome 3300036775 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C7-3C DOE Joint Genome Institute (JGI) 3300036775 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 207661218 601581 369 9 625 13 SRX8807405 Unrestricted 5.4 Metagenome 3300032035 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170 DOE Joint Genome Institute (JGI) 3300032035 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1619827434 3725553 631 21 1057 29 SRX5820629 Unrestricted 9.73 Metagenome 3300003445 *Microbiome Permanent Draft Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S11-DC09B 3300003445 Metagenome Analysis released per JGI data releasing policy No Yes julie.champagne@cnrc-nrc.gc.ca Julie Champagne No Environmental Aquatic Neritic zone/Coastal water Marine Sediment Marine sediment 53.6667 -129.1333 22707719 79719 32 3 57 2 0.0 Metagenome 3300047280 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from San Joaquin River, California, USA - NASQAN2015_047 DOE Joint Genome Institute (JGI) 3300047280 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 37.676 -121.2663 259984722 614644 266 100 480 145 Unrestricted 30.65 Metagenome 3300002231 *Microbiome Permanent Draft Marine sediment microbial communities from the Hellenic Volcanic Arc Marine sediment microbial communities from Santorini caldera mats, Greece - red mat DOE Joint Genome Institute (JGI) 3300002231 Metagenome Analysis Newbler and/or Velvet released based on JGI ITS Yes Yes nckyrpides@lbl.gov Nikos Kyrpides Yes 26487573 Environmental Aquatic Hydrothermal vents Marine Sediment Marine sediment 36.5 25.45 3305188083 8591025 2582 54 4873 84 Unrestricted 0.0 Metagenome 3300026000 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_404 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026000 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 23607217 71857 112 2 206 3 SRX2564897, SRX2581043 Unrestricted 0.0 Metagenome 3300037804 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI146_2018_oct_60m DOE Joint Genome Institute (JGI) 3300037804 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 664361838 1476839 419 148 682 271 SRX9401546 Unrestricted 12.53 Metagenome 3300027895 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027895 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 2023984978 4353140 738 195 1346 312 SRX1987166 Unrestricted 0.0 Metagenome 3300009827 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 01 mira Center for Advanced Technologies in Genomics, Sao Paulo University 3300009827 Metagenome Analysis mira released per JGI data release policy No Yes joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 61146829 98912 493 3 682 4 0.0 Metagenome 3300034970 *Microbiome Finished Coastal sediment microbial communities from Western Antarctica Coastal sediment microbial communities from Western Antarctica - 6_event11 Megahit 11 Michigan State University 3300034970 Metagenome Analysis Megahit v. 1.1 released by Deric Learman No Yes deric.learman@cmich.edu Deric Learman No Environmental Aquatic Coastal Marine Sediment marine sediment -71.4197 -93.4818 339085314 796340 229 37 499 67 0.0 Metagenome 3300039105 *Microbiome Permanent Draft Serpentinized rock microbial communities from various locations Hydrothermal vent fluid microbial communities from New Bay of Prony, New Caledonia - Prony27 Marine Biological Laboratory 3300039105 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid -22.3609167 166.8799667 19099879 46684 43 1 68 1 0.0 Metagenome 3300008382 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 246515023 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008382 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 88202591 178461 53 0 129 0 0.0 Metagenome 3300038708 *Microbiome Permanent Draft Marine microbial communities from North Atlantic, Canada Marine microbial communities from North Atlantic, Canada - T8G National Research Council, Canada Plant Biotechnology Institute 3300038708 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 46.431 -48.48 72758016 109797 38 6 60 11 0.0 Metagenome 3300029194 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011681-56 Beijing Genomics Institute (BGI) 3300029194 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 99119781 136351 68 2 140 3 0.0 Metagenome 3300042965 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-052-1 (Illumina) DOE Joint Genome Institute (JGI) 3300042965 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.5705 -110.8052 321268604 471735 192 2 251 0 Unrestricted 0.0 Metagenome 3300031368 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-230 DOE Joint Genome Institute (JGI) 3300031368 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.759 -70.891 409834324 843645 298 2 457 4 SRX5358425 Unrestricted 15.53 Metagenome 3300014199 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin17_30_metaG DOE Joint Genome Institute (JGI) 3300014199 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1523341253 2785818 771 17 1231 36 SRX3293810 Unrestricted 8.23 Metagenome 3300042657 *Microbiome Permanent Draft Soil microbial communities from Wonju, South Korea Soil microbial communities from Wonju, South Korea - Sample C1 Macrogen Inc 3300042657 Metagenome Analysis MEGAHIT v. 2.4.2 released by JGI data releasing policy No Yes mistiers2@gmail.com Jin-Kyung Hong No Environmental Terrestrial Unclassified Soil Unclassified Soil 37.277123 127.903091 529680444 600118 131 7 104 9 0.0 Metagenome 3300071119 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from KU Field Station, Kansas, USA - UKFS_005-M-20180814-COMP-DNA1 3300071119 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 33015434 97430 62 5 130 4 0.0 Metagenome 3300000607 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 20SEP2008 hypolimnion DOE Joint Genome Institute (JGI) 3300000607 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300023172 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (version 2) DOE Joint Genome Institute (JGI) 3300023172 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1147982143 2293852 428 27 666 41 SRX4072136 Unrestricted 24.55 Metagenome 3300000488 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Salt pond sediment microbial community from Fremont, CA, USA - Pond A23 Sediment 3 DOE Joint Genome Institute (JGI) 3300000488 Metagenome Analysis Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Salt pond 37.472483 -121.97315 49512985 126475 107 13 180 11 SRX3304854 Unrestricted 0.0 Metagenome 3300012080 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ005 MetaG DOE Joint Genome Institute (JGI) 3300012080 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.9182 -74.5217 221741090 379827 292 15 406 26 SRX3539432 Unrestricted 0.0 Metagenome 3300022858 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #939 DOE Joint Genome Institute (JGI) 3300022858 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 162887351 373017 128 1 197 1 SRX4397244 Unrestricted 10.41 Metagenome 3300027277 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S3_20_30 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027277 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen Yes 29920461 Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228508 -119.2716818 168918682 436002 200 1 361 7 SRX2523283 Unrestricted 0.0 Metagenome 3300011813 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00883 Weill Cornell Medical College 3300011813 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.72 -73.85 42919834 47833 13 2 13 2 SRX822848 0.0 Metagenome 3300020024 *Microbiome Permanent Draft Rumen microbial communities from healthy moose, Palmer, Alaska Rumen microbial communities from healthy moose, Palmer, Alaska - Plant fraction Viral contigs Ohio State University 3300020024 Metagenome Analysis IDBA-UD released by Lindsey Solden No Yes solden.2@osu.edu Lindsey Solden Yes 30356154 Host-associated Mammals Stomach Digestive system Rumen Moose rumen 61.5997 -148.1128 3950171 5041 1 0 1 0 0.0 Metagenome 3300039350 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 105_B Beijing Genomics Institute (BGI) 3300039350 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 8647776 9090 3 0 8 0 ERX490931 0.0 Metagenome 3300004190 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 58_HOW8 DOE Joint Genome Institute (JGI) 3300004190 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 75686092 173564 74 3 123 10 SRX2720608 Unrestricted 0.0 Metagenome 3300049508 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MC27 DOE Joint Genome Institute (JGI) 3300049508 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 57146830 136308 206 3 392 3 Unrestricted 19.53 Metagenome 3300042045 *Microbiome Permanent Draft Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - O_b19.1 Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042045 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1241 -89.1401 893324015 905677 2 6 7 11 SRX5234795 0.0 Metagenome 3300002089 *Microbiome Permanent Draft Soil microbial communities from Kansas (Konza Prairie Natural Area and Manhattan, Kansas, USA) Soil microbial communities from Manhattan, Kansas, USA - Sample 100um emPCR DOE Joint Genome Institute (JGI) 3300002089 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 revert back to private per Christa Yes Yes sgtringe@lbl.gov, sgtringe@lbl.gov; ELBrodie@lbl.gov Susannah Tringe, Susannah Tringe; Eoin Brodie No Environmental Terrestrial Unclassified Soil Unclassified Soil 39.214 -96.5852 2068208 3551 3 0 1 0 Unrestricted 0.0 Metagenome 3300042918 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-335 Genome Quebec 3300042918 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.166435 -120.528181 1419197538 3184413 517 106 756 206 0.0 Metagenome 3300020363 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B000000475 (ERX555958-ERR599173) CEA Genoscope 3300020363 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -34.8986 18.03 445845724 1192281 286 16 478 47 0.0 Metagenome 3300028775 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2 DOE Joint Genome Institute (JGI) 3300028775 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 1091190133 2528521 395 61 604 93 SRX5355873 Unrestricted 0.0 Metagenome 3300029178 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021316-136 Beijing Genomics Institute (BGI) 3300029178 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 43482257 57658 46 0 52 0 0.0 Metagenome 3300048019 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_140716.NP1 DOE Joint Genome Institute (JGI) 3300048019 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 608465202 1382079 444 87 654 145 Unrestricted 10.82 Metagenome 3300061135 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IF7SW PMA-treated Jet Propulsion Laboratory, California Institute of Technology 3300061135 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 88719825 136486 11 14 12 25 SRX3808521, SRX3808533, SRX2249339, SRX2249336 0.0 Metagenome 3300008491 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159814214 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008491 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 114134340 147666 114 0 163 0 0.0 Metagenome 3300012104 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #3 DOE Joint Genome Institute (JGI) 3300012104 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 67783456 143526 56 1 107 1 SRX3241667 Unrestricted 0.0 Metagenome 3300002067 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 DOE Joint Genome Institute (JGI) 3300002067 Metagenome Analysis Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn rhizosphere 42.3948 -85.3738 560620246 1420898 810 75 1437 148 SRX1990930 Unrestricted 0.0 Metagenome 3300045566 *Microbiome Draft Lake microbial communities from Canada Lake sediment microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-460 Genome Quebec 3300045566 Metagenome Analysis MEGAHIT v1.0.6 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Lake Sediment 49.044741 -122.310811 355323315 448405 137 21 198 22 0.0 Metagenome 3300003630 *Microbiome Permanent Draft Hypersaline viral and bacterial communities from Bras del Port, Santa Pola, Spain Hypersaline viral communities from Bras del Port, Santa Pola, Spain - Lo Valdivia P4 Lifesequencing S.L. 3300003630 Metagenome Analysis released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline samples 38.192206 -0.591865 18509764 37360 2 0 2 0 0.0 Metagenome 3300043502 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 042-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043502 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9198 -106.9515 303524740 846684 447 10 870 15 Unrestricted 6.99 Metagenome 3300041032 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - T4D6 IDBA-UD 60x Baseclear 3300041032 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 154343554 234989 123 23 176 29 0.0 Metagenome 3300028262 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_05JUN2017_LD1 DOE Joint Genome Institute (JGI) 3300028262 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 110326303 202124 6 74 7 126 SRX5345789 Unrestricted 17.81 Metagenome 3300005407 *Microbiome Permanent Draft Mixed alcohol bioreactor microbial communities from Texas A&M University Mixed alcohol bioreactor microbial communities from Texas A and M University - 55C, Day 16 v2 (version 2) DOE Joint Genome Institute (JGI) 3300005407 Metagenome Analysis Newbler released based on JGI ITS No Yes tgentry@ag.tamu.edu Terry Gentry Yes 22761870 Engineered Biotransformation Unclassified Mixed alcohol bioreactor Unclassified Mixed alcohol bioreactor 30.620833 -96.341111 72060903 166643 80 1 117 2 Unrestricted 0.0 Metagenome 3300024281 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 11D DOE Joint Genome Institute (JGI) 3300024281 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 182638192 534316 217 25 390 44 SRX4457374 Unrestricted 54.99 Metagenome 3300005688 *Microbiome Permanent Draft Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia Enhanced biological phosphorus removal bioreactor viral communities from the University of Queensland, Australia - SBR4-V92809 Phage Sequencing University of Queensland 3300005688 Metagenome Analysis CLC 6.0 Released per Connor Skennerton (Sep 15, 2015) No Yes c.skennerton@gmail.com Connor Skennerton No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor lab-scale EBPR bioreactor -27.49999 153.012098 32747867 71281 14 1 32 1 0.0 Metagenome 3300069279 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Lower Teakettle, Sierra National Forest, California, USA - TEAK_004-M-20210726-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069279 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 37.001687 -119.036304 2624142173 6534698 1524 192 2981 258 0.0 Metagenome 3300026708 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized -NN628 (SPAdes) DOE Joint Genome Institute (JGI) 3300026708 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 15024515 45565 62 2 117 4 SRX1987006 Unrestricted 0.0 Metagenome 3300014513 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 526_4M Beijing Genomics Institute (BGI) 3300014513 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 31091202 33938 18 0 26 0 ERX491172 0.0 Metagenome 3300013639 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100682 University of Pennsylvania 3300013639 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 5927958 15951 13 0 27 0 SRX756412 0.0 Metagenome 3300002316 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP16-I5 3300002316 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300013166 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100428 University of Pennsylvania 3300013166 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 29914052 63532 19 2 28 4 SRX756570 0.0 Metagenome 3300011336 *Microbiome Finished Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang Chunlab, Inc 3300011336 Metagenome Analysis SPAdes 3.8.2 released by JGI data releasing policy No Yes chojc@inha.ac.kr; krmoon518@gmail.com Jang-Cheon Cho; Kira Moon No Environmental Aquatic River Freshwater Unclassified Freshwater 37.5415972 127.243111 14998365 20926 0 0 0 0 0.0 Metagenome 3300025095 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection A2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025095 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.53 -107.78 270649229 481186 327 1 530 4 SRX1990955 Unrestricted 0.0 Metagenome 3300035004 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Goleter apudmare HA4340-LM2 and co-occurring heterotrophs from cave wall surface from Maniniholo cave, Kauai, Hawaii, United States - 20181031_20A DOE Joint Genome Institute (JGI) 3300035004 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Cave Deep subsurface Wall surface Cave wall surface 22.2199 -159.566 23626291 23177 12 0 9 0 SRX8237837 Unrestricted 453.81 Metagenome 3300025703 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample F52-2 deep-092012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025703 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 473236989 947465 279 35 447 48 SRX1987693 Unrestricted 0.0 Metagenome 3300029581 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI021992-23 Beijing Genomics Institute (BGI) 3300029581 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 173625301 270379 121 0 216 1 0.0 Metagenome 3300049791 *Microbiome Permanent Draft Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA Soil microbial communities from Jemez River Basin, Valles Caldera National Preserve, New Mexico, USA - 4_d_apr_JRB_CZO DOE Joint Genome Institute (JGI) 3300049791 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dawsonfairbanks@email.arizona.edu Dawson Fairbanks No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.8832033 -106.53744 879536203 1481736 315 16 520 19 Unrestricted 13.99 Metagenome 3300032002 *Microbiome Permanent Draft Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 DOE Joint Genome Institute (JGI) 3300032002 Metagenome Analysis spades v. 3.12.0 Yes Yes agaudin@ucdavis.edu Amelie Gaudin No Host-associated Plants Rhizosphere Roots Soil rhizosphere 38.5 -121.7 7613106214 19358770 3640 171 6172 330 SRX5801130 Unrestricted 8.63 Metagenome 3300033406 *Microbiome Permanent Draft Wetland soil microbial communities from various locations Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_CT DOE Joint Genome Institute (JGI) 3300033406 Metagenome Analysis spades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified soil 41.3777 -82.5117 1814136492 4318649 1448 19 2339 22 SRX6413055 Unrestricted 38.75 Metagenome 3300054101 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin02_10_metaG re-annotation DOE Joint Genome Institute (JGI) 3300054101 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1316778045 2701481 473 58 720 83 SRX3291956 0.0 Metagenome 3300040073 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 078_R1_022417 University of Maryland 3300040073 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.5358 19.01722 14452785 31943 43 1 62 3 0.0 Metagenome 3300050220 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Warrenville, Illinois, USA - 55_701_IL_DR_1m_c1_T1_16O DOE Joint Genome Institute (JGI) 3300050220 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 41.84145 -88.2298 1046116414 1727370 336 8 583 13 Restricted 13.23 Metagenome 3300000881 *Microbiome Permanent Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil v2 (version 2) DOE Joint Genome Institute (JGI) 3300000881 Metagenome Analysis Velvet released based on JGI ITS Yes Yes janet.jansson@pnnl.gov Janet Jansson Yes 30158906 Environmental Terrestrial Unclassified Soil Grasslands Soil 43.303611 -89.332778 6.8 259370859 706571 1709 22 3147 34 Unrestricted 0.0 Metagenome 3300031769 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24 DOE Joint Genome Institute (JGI) 3300031769 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 932267216 2272013 288 5 435 9 SRX5818557 Unrestricted 11.34 Metagenome 3300039132 *Microbiome Permanent Draft Human fecal and environmental microbial communities from Peru and El Salvador Sewage microbial communities from Lima, Peru - SW081 Washington University in St. Louis 3300039132 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27172044 Engineered Wastewater Unclassified Sewage Unclassified Sewage -12.108 -77.056 11472764 24539 62 0 102 0 SRX1440987, SRX1441272 0.0 Metagenome 3300022451 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1BM1 JM55 AGRF 3300022451 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 45381324 85133 35 0 59 0 0.0 Metagenome 3300009146 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015 DOE Joint Genome Institute (JGI) 3300009146 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wilkins.231@osu.edu, mike.wilkins@colostate.edu Michael Wilkins Yes 30086797 Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0956 -99.1001 1052360737 2154529 881 24 1641 41 SRX2753772 Unrestricted 0.0 Metagenome 3300024330 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction) DOE Joint Genome Institute (JGI) 3300024330 Metagenome Analysis metalrec/blasr v. metalrec version 1.0.2/blasr 1.3.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 863101541 1440368 447 80 736 117 SRX4808260, SRX4808258, SRX4808259, SRX4808255, SRX4808256, SRX4808257, SRX4808261, SRX4808262, SRX4808263 Unrestricted 0.0 Metagenome 3300069312 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_060-O-20160726-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069312 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 3366811 10991 26 4 37 5 0.0 Metagenome 3300031787 *Microbiome Permanent Draft Freshwater fungal communities from various locations Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114 DOE Joint Genome Institute (JGI) 3300031787 Metagenome Analysis spades v. 3.12.0 Yes Yes tyjames@umich.edu Timothy Y. James No Environmental Aquatic Lake Freshwater Lake biofilm freshwater 41.6898 -83.2813 2382745425 4703964 999 174 1340 306 SRX6420473 Unrestricted 22.44 Metagenome 3300035180 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Filamentous streamer microbial communities from Yellowstone Lake, YNP, Wyoming, USA - RO1DNA_8/2/18_1/3_streamer DOE Joint Genome Institute (JGI) 3300035180 Metagenome Analysis metaspades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Microbial mats filamentous streamer 44.5106 -110.3566 2102803127 3538751 1003 270 1487 354 SRX8281387 Unrestricted 23.95 Metagenome 3300000149 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 10m DOE Joint Genome Institute (JGI) 3300000149 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Photic zone Marine 49.283333 -134.666667 100875429 238270 113 48 222 68 Unrestricted 0.0 Metagenome 3300046781 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 soil DOE Joint Genome Institute (JGI) 3300046781 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121447 -123.2718 6.13 353416215 614708 192 21 372 39 Unrestricted 14.14 Metagenome 3300014941 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS63_0 University of Hohenheim 3300014941 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 83760640 142323 50 0 75 0 0.0 Metagenome 3300033545 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE4 DOE Joint Genome Institute (JGI) 3300033545 Metagenome Analysis spades v. 3.13.0 Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 59.9992 10.7901 139053939 301007 115 34 171 61 SRX7531670 Unrestricted 19.38 Metagenome 3300040185 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_007-M-20160823-COMP-DNA1 Battelle Memorial Institute 3300040185 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 11898082 34967 62 13 101 20 0.0 Metagenome 3300007070 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC2 2012 metaG DOE Joint Genome Institute (JGI) 3300007070 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jkjarett@lbl.gov, jkjarett@lbl.gov; rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca Jessica Jarett, Jessica Jarett; Ramunas Stepanauskas; Peter Dunfield No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 49.9543 -116.5155 7.93 206314244 287708 205 0 295 0 SRX2839018 Unrestricted 0.0 Metagenome 3300009693 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC097_MetaG DOE Joint Genome Institute (JGI) 3300009693 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 33.8 -118.28 1110192644 1994986 807 2 1289 8 SRX2338770 Unrestricted 0.0 Metagenome 3300002833 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A5-10 DOE Joint Genome Institute (JGI) 3300002833 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 3147335 10194 65 0 137 3 SRX1991124 Unrestricted 0.0 Metagenome 3300026309 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_12_30cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026309 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 556665582 983471 327 10 556 10 SRX2727597 Unrestricted 0.0 Metagenome 3300018082 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2 DOE Joint Genome Institute (JGI) 3300018082 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 1.7 1077654468 2270936 805 14 1503 39 SRX3939726 Unrestricted 5.71 Metagenome 3300014061 *Microbiome Permanent Draft Fecal viral communites from wild urban brown rats in Berlin, Germany Fecal viral communites from wild urban brown rats in Berlin, Germany - Mu/10/1781 Freie University Berlin 3300014061 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 52.529611 13.401343 1852586 4238 1 0 0 0 SRX616525 0.0 Metagenome 3300037341 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site1_salt_MV_1 DOE Joint Genome Institute (JGI) 3300037341 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Salt marsh microbial mat 20.7609 58.6478 892788659 1301978 301 7 451 11 SRX9169509 Unrestricted 45.68 Metagenome 3300044928 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_6_F DOE Joint Genome Institute (JGI) 3300044928 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 172222858 203418 96 1 118 2 Unrestricted 71.09 Metagenome 3300014753 *Microbiome Permanent Draft Seawater microbial communities from Singapore Strait, Singapore Seawater microbial communities from Singapore Strait, Singapore - Site A Oct Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300014753 Metagenome Analysis CLC workbench released by JGI data releasing policy No Yes erinscm@nus.edu.sg Charmaine Ng No Environmental Aquatic Unclassified Marine Unclassified Seawater 1.205291 103.634563 94108413 128968 23 10 24 13 0.0 Metagenome 3300007794 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159571453 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007794 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 127060213 212027 126 0 193 0 0.0 Metagenome 3300014276 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00990 Weill Cornell Medical College 3300014276 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.6 -73.75 11563838 16951 10 0 11 0 SRX822952 0.0 Metagenome 3300043397 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from New Salem, Massachusetts, United States - hopbrook_2019_sw_WHONDRS-S19S_0012 DOE Joint Genome Institute (JGI) 3300043397 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 42.4717 -72.331 178210540 311448 309 75 592 118 Unrestricted 24.58 Metagenome 3300016717 *Microbiome Permanent Draft Viral community in wastewater in Singapore Wastewater viral communities from secondary settling tank in WWT plant in Singapore - SST_Nov16 Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016717 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Engineered WWTP Unclassified Wastewater Unclassified wastewater 1.28 103.74 37193923 64838 3 0 15 0 0.0 Metagenome 3300055081 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_1-s30 day 210 DOE Joint Genome Institute (JGI) 3300055081 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1708052686 2424081 271 167 367 208 Unrestricted 38.2 Metagenome 3300001701 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2-11 DOE Joint Genome Institute (JGI) 3300001701 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 277153 1000 27 0 40 2 SRX1990525 Unrestricted 0.0 Metagenome 3300069643 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_043-M-20170802-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069643 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 24186927 74596 93 3 159 1 0.0 Metagenome 3300033830 *Microbiome Permanent Draft Hot spring microbial communities from different geyser basins in Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Norris Geyser Basin, Yellowstone National Park, WY, United States - NOR.RB_S DOE Joint Genome Institute (JGI) 3300033830 Metagenome Analysis spades v. 3.13.0 Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Near-boiling (>90C) Thermal springs Sediment hot spring sediment 44.7265 -110.709 104699253 204492 37 2 65 4 SRX7584881 Unrestricted 685.65 Metagenome 3300056357 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FL_02 DOE Joint Genome Institute (JGI) 3300056357 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.407926 -82.180036 58837402 95590 7 5 9 5 Restricted 318.4 Metagenome 3300020298 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000953 (ERX556051-ERR599128) CEA Genoscope 3300020298 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -5.2771 -85.2995 244553677 580903 233 19 388 27 0.0 Metagenome 3300028152 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_07AUG2017_LD1 DOE Joint Genome Institute (JGI) 3300028152 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 74754329 141513 21 36 27 63 SRX5345839 Unrestricted 19.39 Metagenome 3300025334 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIRDL14 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025334 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5563 78.1877 6907677 8599 2 0 4 0 SRX2747265 Unrestricted 0.0 Metagenome 3300036993 *Microbiome Permanent Draft Soil microbial communities from a coastal freshwater wetland in North Carolina, United States Soil microbial communities from coastal freshwater wetland in North Carolina, United States - 9NFC DOE Joint Genome Institute (JGI) 3300036993 Metagenome Analysis metaspades v. 3.13.0 Yes Yes peraltaa@ecu.edu Ariane Peralta No Environmental Terrestrial Wetlands Soil Unclassified soil 35.8956 -76.1655 287506000 512351 170 8 295 13 SRX8387843 Unrestricted 17.06 Metagenome 3300022332 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL3WBGP2 JM8 AGRF 3300022332 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996531 115.533257 22314616 46123 43 1 60 1 0.0 Metagenome 3300027524 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027524 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 217792000 572560 503 214 911 344 SRX3311675, SRX3311676 Unrestricted 0.0 Metagenome 3300026970 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 P3 (SPAdes) DOE Joint Genome Institute (JGI) 3300026970 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 97805146 151811 96 0 116 0 SRX3311546 Unrestricted 0.0 Metagenome 3300017702 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - Lowphox_10 viral metaG DOE Joint Genome Institute (JGI) 3300017702 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -29.499 -71.609 154017465 349874 65 4 90 11 SRX7206743 Unrestricted 14.95 Metagenome 3300006354 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 DOE Joint Genome Institute (JGI) 3300006354 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment watersheds 41.1289 -78.4195 3448708533 11003815 2365 162 4480 303 SRX2745779 Unrestricted 0.0 Metagenome 3300028281 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK30 DOE Joint Genome Institute (JGI) 3300028281 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 148386735 389816 219 15 412 17 SRX5245479 Unrestricted 7.9 Metagenome 3300000125 *Microbiome Draft Marine microbial communities from chronically polluted sediments in four geographic locations Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site MC sample ARG 01_11.3m DOE Joint Genome Institute (JGI) 3300000125 Metagenome Analysis released based on JGI ITS Yes Yes hdionisi@cenpat.edu.ar Hebe Dionisi No Environmental Aquatic Intertidal zone Marine Sediment Marine -54.810872 -68.295525 49715675 140407 196 29 321 43 Unrestricted 0.0 Metagenome 3300034000 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 14HMC DOE Joint Genome Institute (JGI) 3300034000 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological hypolithic biocrust 34.7856 -115.66 163645398 392914 364 17 628 34 SRX7615723 Unrestricted 7.63 Metagenome 3300024262 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300024262 Metagenome Analysis spades v. 3.11.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Oceanic Marine Sediment Deep subsurface 58.622 18.254 793797690 1656545 192 28 264 30 SRX2524290 Unrestricted 0.0 Metagenome 2032320003 *Microbiome Draft Soil microbial communities from FACE and OTC sites in USA Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- DOE Joint Genome Institute (JGI) 2032320003 Metagenome Analysis Newbler released based on JGI ITS No Yes kuske@lanl.gov Cheryl Kuske No Environmental Terrestrial Sand Soil Desert Soil 36.76667 -115.95 123178563 316494 71 0 178 0 Unrestricted 0.0 Metagenome 7000000327 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159207311 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000327 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 18872291 37067 0 0 0 0 0.0 Metagenome 3300050212 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water microbial communities from Sandhills, Nebraska, United States - NSL_Border_2017_MMG DOE Joint Genome Institute (JGI) 3300050212 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.79185 -102.53404 1737005424 2488216 657 31 903 41 Unrestricted 26.76 Metagenome 3300029562 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35712 Beijing Genomics Institute (BGI) 3300029562 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 169961040 214798 152 1 211 0 0.0 Metagenome 3300029870 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37543 Beijing Genomics Institute (BGI) 3300029870 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 130786085 167341 134 0 177 0 0.0 Metagenome 3300042029 *Microbiome Permanent Draft Mollusc gills microbial communities from various hydrothermal vent in Atlantic Ocean Mollusc gills microbial communities from Lilliput hydrothermal vent, Atlantic Ocean - BspSym_Li_2_10-4 Max Planck Institute for Marine Microbiology 3300042029 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills -9.5481672 -13.2088327 401600648 451621 4 9 5 7 ERX3367179 0.0 Metagenome 3300038698 *Microbiome Permanent Draft Genetically engineered switchgrass root microbial communities from Knoxville, USA Genetically engineered switchgrass root microbial communities from Knoxville, USA - plot15 University of Tennessee 3300038698 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Host-associated Plants Rhizosphere Roots Soil Plant roots 35.90441 -83.953801 61514330 174995 144 2 332 10 SRX648991, SRX648989, SRX648990 0.0 Metagenome 3300001598 *Microbiome Permanent Draft Asian elephant fecal microbial communities from Hamburg Zoo, Germany Elephant fecal microbiome from Asian Elephant in Hamburg Zoo, Germany 3300001598 Metagenome Analysis released per submitter No Yes g2l.info@gwdg.de Anja Poehlein, G2L Team Yes 25208077 Host-associated Mammals Large intestine Digestive system Fecal Asian elephant fecal 53.595256 9.941572 929519943 1068385 338 12 415 15 0.0 Metagenome 3300041975 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego desert, Southern California, United States - 2020_S3v DOE Joint Genome Institute (JGI) 3300041975 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified Soil 33.3052 -116.2547 409692323 1040033 793 56 1428 82 SRX14810483 Unrestricted 10.64 Metagenome 3300040428 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Soaproot Saddle, Pacific Southwest, CA, USA - SOAP_043-M-20180531-COMP-DNA1 Battelle Memorial Institute 3300040428 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.03337 -119.26219 4478510 14300 50 5 65 13 0.0 Metagenome 3300008326 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 158458797 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008326 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 124919497 167964 118 0 193 0 0.0 Metagenome 3300000570 *Microbiome Permanent Draft Soil microbial communities from tobacco field in Mockrehna, Germany Soil microbial communities from tobacco field in Mockrehna, Germany Helmholtz Zentrum Munchen 3300000570 Metagenome Analysis released per JGI data release policy No Yes rene.kermer@ufz.de Rene Kermer No Environmental Terrestrial Unclassified Soil Agricultural land Soil 51.498 12.846 0 0 0 0 0 0 0.0 Metagenome 3300026674 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN356 (SPAdes) DOE Joint Genome Institute (JGI) 3300026674 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 7183270 23449 44 5 81 10 SRX3311799 Unrestricted 0.0 Metagenome 3300000862 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 64 DOE Joint Genome Institute (JGI) 3300000862 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 14926982 39649 47 0 85 0 SRX1985411 Unrestricted 0.0 Metagenome 3300022150 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake in Antarctica - Synechococcus sp. Ace-P (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300022150 Metagenome Analysis spades v. 3.11.1-check Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline lake -68.4717 78.1877 162843329 184935 79 2 69 1 Unrestricted 125.12 Metagenome 3300002192 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC3b day 64 University of Sao Paulo, Virginia Bioinformatics Institute 3300002192 Metagenome Analysis SoapDeNovo released per PI's request No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 72084723 201458 5 4 26 4 0.0 Metagenome 3300070483 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_036-O-20200113-COMP-DNA1 Battelle Memorial Institute 3300070483 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 19.554406 -155.323212 4.74-5.09 14175921 45272 42 3 85 4 0.0 Metagenome 3300027311 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1569-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027311 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2861 -123.7318 197675114 427278 143 14 214 25 SRX2753764 Unrestricted 0.0 Metagenome 3300046340 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_114 DOE Joint Genome Institute (JGI) 3300046340 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9223 -106.9493 409943767 1152412 1203 309 2187 461 Restricted 0.0 Metagenome 3300046762 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Wabash River, Indiana, USA - NASQAN2011_034 DOE Joint Genome Institute (JGI) 3300046762 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.1308 -87.9414 7037796 20738 60 11 84 17 Unrestricted 0.0 Metagenome 3300025827 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG03_land_8/20/14_0.80 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025827 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 443034556 832303 515 2 800 14 SRX3348118 Unrestricted 0.0 Metagenome 3300005194 *Microbiome Permanent Draft Mallorca 2014 E5 E5 T6 University of Alicante 3300005194 Metagenome Analysis IDBA 1.1.1 PRE correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline 39.338015 3.051796 38999568 115200 6 0 9 0 0.0 Metagenome 3300047573 *Microbiome Permanent Draft Floating fern leaf microbial communities from various locations Floating fern leaf microbial communities from Floridablanca, Philippines - 0024_IRRI DOE Joint Genome Institute (JGI) 3300047573 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dave.armitage@gmail.com David Armitage No Host-associated Plants Phylloplane/Leaf Phyllosphere Endophytes Leaf 14.9802 120.48 35461397 58700 22 6 19 6 Unrestricted 379.22 Metagenome 3300069320 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_009-M-20140910-COMP-DNA1 re-annotation Argonne National Laboratory 3300069320 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 12207681 39589 44 8 80 13 ERX2133952 0.0 Metagenome 3300012497 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510 DOE Joint Genome Institute (JGI) 3300012497 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 121660235 319562 267 33 529 41 SRX3527355 Unrestricted 0.0 Metagenome 3300048928 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 DOE Joint Genome Institute (JGI) 3300048928 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Unclassified Roots Unclassified Root 42.40581 -85.40228 1206537208 1720528 427 53 527 69 Unrestricted 23.47 Metagenome 3300037780 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - ARW9_20151027 DOE Joint Genome Institute (JGI) 3300037780 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 312938514 469600 146 3 187 10 SRX9140158 Unrestricted 35.86 Metagenome 3300001077 *Microbiome Permanent Draft Comparative metagneomics of mesophilic and thermophilic cellulose-adapted consortia Cellulose adapted compost microbial communities from Newby Island Compost Facility, Milpitas, CA, USA - BGW Initial Compost DOE Joint Genome Institute (JGI) 3300001077 Metagenome Analysis Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Solid waste Composting Bio- and green waste (BGW) Unclassified Feedstock adapted compost 37.86971 -122.31414 236465129 523041 383 11 626 15 SRX3311904 Unrestricted 0.0 Metagenome 3300018061 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1 DOE Joint Genome Institute (JGI) 3300018061 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 .6 890072332 1924070 750 18 1380 43 SRX3939286 Unrestricted 5.58 Metagenome 3300036883 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-X1 DOE Joint Genome Institute (JGI) 3300036883 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0475 547336890 880836 164 3 238 4 SRX8137570 Unrestricted 14.31 Metagenome 3300014082 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Vietnam to Iowa, USA - VN1 Iowa State University 3300014082 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 3889183 6687 0 1 0 0 SRX1150316 0.0 Metagenome 3300040223 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_001-M-20170626-COMP-DNA1 Battelle Memorial Institute 3300040223 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 8659696 25002 46 1 83 2 0.0 Metagenome 3300051098 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Leeds, Wisconsin, USA - 39_777_WI_DR_0cm_c3_T1_18O DOE Joint Genome Institute (JGI) 3300051098 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 43.30485 -89.3309 1085951913 1872110 502 11 849 24 Restricted 14.61 Metagenome 3300035392 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from Middle Island sinkhole, Lake Huron, Michigan, United States - MIS.2017.111B reassembly DOE Joint Genome Institute (JGI) 3300035392 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes macgregb@umn.edu; sgrim@umich.edu Barbara MacGregor; Sharon Grim No Environmental Aquatic Lake Freshwater Sediment microbial mat 45.1993 -83.3279 174486065 221484 68 17 79 17 SRX7582716 0.0 Metagenome 3300037556 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR11_3 DOE Joint Genome Institute (JGI) 3300037556 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Crustal Fluids crustal fluids 47.7534 -127.7638 11490409 30968 28 1 63 0 SRX9096394 Unrestricted 1219.0 Metagenome 3300026698 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN411 (SPAdes) DOE Joint Genome Institute (JGI) 3300026698 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Soil 44.20517707 -122.1284473 13461771 46195 66 4 114 4 SRX3311798 Unrestricted 0.0 Metagenome 3300002741 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL DOE Joint Genome Institute (JGI) 3300002741 Metagenome Analysis Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Unclassified Roots Unclassified Arabidopsis root 35.9082 -79.0499 118510143 207012 93 4 171 8 SRX1991091 Unrestricted 0.0 Metagenome 3300001574 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0262 DOE Joint Genome Institute (JGI) 3300001574 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -3.03 -27.33 19054207 48567 40 0 70 0 SRX1983272 Unrestricted 0.0 Metagenome 3300057149 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2019-0026 DOE Joint Genome Institute (JGI) 3300057149 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.74694444 -83.31444444 521449242 1054660 394 136 604 245 Unrestricted 24.99 Metagenome 3300002953 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-9-D DOE Joint Genome Institute (JGI) 3300002953 Metagenome Analysis Yes Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 130944632 298946 252 36 477 65 SRX2568519 Unrestricted 0.0 Metagenome 3300038674 *Microbiome Permanent Draft Metagenomes from Anaerobic Digestors at Pulp and Paper Mills Anaerobic digester sludge microbial community from a pulp and paper mill in Alberta, Canada - MWAHD1170726 MSP Genome Quebec, University of Toronto 3300038674 Metagenome Analysis spades v. 3.12.0 Yes Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Engineered Bioreactor Unclassified Anaerobic Unclassified anaerobic sludge 54.1274 -115.6516 206201282 234310 53 2 77 1 0.0 Metagenome 3300017735 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 54 SPOT_SRF_2014-05-21 DOE Joint Genome Institute (JGI) 3300017735 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 273477332 651081 83 58 150 132 SRX7280095, SRX7280094 Unrestricted 0.0 Metagenome 2084038018 *Microbiome Permanent Draft Ant host-associated microbial communities from Gamboa, Panama Ant host-associated microbial communities from Gamboa, Panama - Trachymyrmex fungus garden DOE Joint Genome Institute (JGI) 2084038018 Metagenome Analysis Newbler released based on JGI ITS No Yes sandye.adams@gmail.com, currie@bact.wisc.edu Adams, S, Cameron Currie Yes 25406380 Environmental Terrestrial Insects nest Nest Fungus garden/Fungus gallery Ant host-associated 9.1167 -79.7 79020976 200369 159 7 229 0 Unrestricted 0.0 Metagenome 3300042196 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_070717_145_160_jgi DOE Joint Genome Institute (JGI) 3300042196 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2218252961 3639692 779 3 1361 5 Unrestricted 13.17 Metagenome 3300013995 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01512 Weill Cornell Medical College 3300013995 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.99 16036923 22766 19 0 23 0 SRX823388 0.0 Metagenome 3300013420 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100164 University of Pennsylvania 3300013420 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4721208 9199 10 4 19 9 SRX756368 0.0 Metagenome 3300029688 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35562 Beijing Genomics Institute (BGI) 3300029688 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 161435363 213202 146 2 189 0 0.0 Metagenome 3300029407 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 038_10_27_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029407 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 158496013 210875 184 0 224 0 0.0 Metagenome 3300042643 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Glyptotermes sp. from Ebogo I, Mbalmayo, Cameroon - Gx481 Eurofins MWG Operon 3300042643 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 3.418125 11.451205 1631377925 1683559 290 45 306 57 0.0 Metagenome 3300003429 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN DOE Joint Genome Institute (JGI) 3300003429 Metagenome Analysis Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 373140641 836715 343 83 485 123 SRX2565054, SRX2565055, SRX2565056 Unrestricted 0.0 Metagenome 3300005178 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_09_30cm DOE Joint Genome Institute (JGI) 3300005178 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2521794524 7097504 2387 70 4135 132 SRX2521042 Unrestricted 0.0 Metagenome 3300000797 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 23JUL2008 deep hole epilimnion v1 (version 2) DOE Joint Genome Institute (JGI) 3300000797 Metagenome Analysis released based on JGI ITS No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 0 0 0 0 0 0 SRX3310952 Unrestricted 0.0 Metagenome 3300003854 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius tantulus BELIZE.2 DOE Joint Genome Institute (JGI) 3300003854 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 56563071 152126 3 4 2 9 SRX3340613, SRX3340612 Unrestricted 0.0 Metagenome 3300027236 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1554A-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027236 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2871 -123.9424 107042866 233191 163 41 237 60 Unrestricted 0.0 Metagenome 3300017909 *Microbiome Permanent Draft Marine microbial communities from Caribbean coral reef seawater Marine microbial communities from Caribbean coral reef seawater, Cuba - Site F University of Illinois, Urbana-Champaign 3300017909 Metagenome Analysis MEGAHIT v1.1.1-2-g02102e1 released by JGI data releasing policy No Yes lweber@whoi.edu Laura Weber No Environmental Aquatic Intertidal zone Marine Coral reef seawater 21.10845 -78.7208 297584398 426243 94 35 96 42 0.0 Metagenome 3300070288 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Florida, USA - DSNY_041-M-20170829-COMP-DNA1 3300070288 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 1451792 4673 15 3 34 5 0.0 Metagenome 3300028883 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Marine sediment archaeal communities from Little Sippewissett salt marsh, Falmouth, MA, United States - SSM-Acet-12 DOE Joint Genome Institute (JGI) 3300028883 Metagenome Analysis spades v. 3.11.1 Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 1374350609 2759481 921 5 1527 12 SRX5356211 Unrestricted 32.93 Metagenome 3300007220 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764305738 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007220 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 150127048 190070 88 0 123 0 0.0 Metagenome 3300037088 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-2-X1 DOE Joint Genome Institute (JGI) 3300037088 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 641553749 1158365 326 1 561 0 SRX8137929 Unrestricted 10.04 Metagenome 7000000563 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763820215 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000563 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 61633718 113866 0 0 0 0 0.0 Metagenome 3300039627 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 066_R1_022417 University of Maryland 3300039627 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.59222 19.02959 71657530 128617 104 1 180 2 0.0 Metagenome 3300006173 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG DOE Joint Genome Institute (JGI) 3300006173 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.4774 -85.451 4467541852 13707811 3165 206 5243 366 SRX2776985 Unrestricted 0.0 Metagenome 3300020274 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX556029-ERR598943) CEA Genoscope 3300020274 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -5.254 -85.2248 270789600 706118 282 9 468 26 0.0 Metagenome 3300020493 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 14NOV2009 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020493 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 77169164 155620 87 46 162 60 SRX1988266 Unrestricted 0.0 Metagenome 3300025146 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 1 (version 2) DOE Joint Genome Institute (JGI) 3300025146 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 800266094 1728501 778 6 1401 13 Unrestricted 0.0 Metagenome 3300028039 *Microbiome Permanent Draft Extreme environments viral communities from various locations Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 2300m DOE Joint Genome Institute (JGI) 3300028039 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Bathypelagic Marine Unclassified seawater 34.0321 27.821 117111771 297856 3 5 8 5 SRX5248996 Unrestricted 87.72 Metagenome 3300030470 *Microbiome Permanent Draft Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA - cet5 University of Minnesota 3300030470 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic River Freshwater Unclassified Freshwater 44.917867 -93.128967 4518589 4548 6 0 3 0 0.0 Metagenome 3300031981 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25 DOE Joint Genome Institute (JGI) 3300031981 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1151588446 2785846 434 4 763 3 SRX5818668 Unrestricted 12.28 Metagenome 3300014747 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 560_4M Beijing Genomics Institute (BGI) 3300014747 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 36169355 52611 22 0 23 0 ERX491204 0.0 Metagenome 3300042320 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME26Aug2014-rr0704 DOE Joint Genome Institute (JGI) 3300042320 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 678484567 1101386 273 37 445 68 Unrestricted 13.15 Metagenome 3300009095 *Microbiome Permanent Draft Agricultural soil microbial communities from Utah and Georgia to study Nitrogen management Agricultural soil microbial communities from Utah to study Nitrogen management - Steer compost 2015 DOE Joint Genome Institute (JGI) 3300009095 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jeanette.norton@usu.edu Jeanette Norton No Environmental Terrestrial Agricultural land Soil Unclassified Agricultural soil 41.7655 -111.8143 7802527641 16592167 13482 397 21052 565 SRX2924374 Unrestricted 0.0 Metagenome 3300005581 *Microbiome Permanent Draft Freshwater lentic microbial communities from the great Laurentian Lakes, MI, USA for biogeochemical studies Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF DOE Joint Genome Institute (JGI) 3300005581 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified Freshwater lentic 44.701094 -82.854085 669126402 1770269 270 15 460 38 SRX2577339 Unrestricted 0.0 Metagenome 3300018026 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100 DOE Joint Genome Institute (JGI) 3300018026 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 987274740 1881915 517 8 863 16 SRX3959994 Unrestricted 13.24 Metagenome 3300009703 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaG DOE Joint Genome Institute (JGI) 3300009703 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Volcanic Marine Unclassified Deep subsurface 36.5275 25.4871 1642550292 3143745 1114 98 1865 140 SRX3203425 Unrestricted 0.0 Metagenome 3300027027 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N3_0_10 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027027 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37379502 -119.2722385 83878151 250233 208 16 388 32 SRX2523215 Unrestricted 0.0 Metagenome 3300061641 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Chase Lake Wetlands, North Dakota, USA - WOOD_024-O-20210714-comp-1 DOE Joint Genome Institute (JGI) 3300061641 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 47.151171 -99.262648 2795863631 4473485 775 17 1123 25 Unrestricted 14.3 Metagenome 3300045475 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Cordillera ecozone, Canada - Lake 14-585 Genome Quebec 3300045475 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 64.735027 -138.365273 595471369 1240090 218 42 334 56 0.0 Metagenome 3300053731 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 endosphere DOE Joint Genome Institute (JGI) 3300053731 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.588305 -123.193187 135553478 298301 99 13 139 31 Unrestricted 11.99 Metagenome 3300035670 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-LG DOE Joint Genome Institute (JGI) 3300035670 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back fracking water 35.784 -98.26 1612276770 3686679 1273 116 2034 170 SRX8135500 Unrestricted 29.84 Metagenome 3300040675 *Microbiome Permanent Draft Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada - diffuse fluids EMf1 Dalhousie University 3300040675 Metagenome Analysis Megahit v. 1.2.8 released by JGI data releasing policy No Yes smurdock@uvic.ca Sheryl Murdock No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Marine 47.9501 -129.0971 494230688 1033435 491 43 747 75 0.0 Metagenome 3300028993 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 335_4M Beijing Genomics Institute (BGI) 3300028993 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 46073654 51580 18 0 29 0 ERX491084 0.0 Metagenome 2088090005 *Microbiome Permanent Draft Freshwater sediment microbial communities from Lake Washington, Seattle, USA, for methane and nitrogen cycles Sediment microbial communities from Lake Washington, Seattle, for Methane and Nitrogen Cycles, original sample replicate 1 DOE Joint Genome Institute (JGI) 2088090005 Metagenome Analysis Newbler released based on JGI ITS No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova Yes 23638358 Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.052 -122.267889 559537102 1554712 520 50 838 0 Unrestricted 0.0 Metagenome 3300008361 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 764325968 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008361 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 126719161 154320 95 1 130 0 0.0 Metagenome 3300013885 *Microbiome Permanent Draft Microbial communities from methanogenic microcosms from oil petroleum samples laboratory microbial enrichments from Reconcavo Basin petroleum reservoir, Newcastle Upon Tyne, UK - Enrich1 Enrich 1 UNIVERSIDADE DE SAO PAULO 3300013885 Metagenome Analysis METASPADES k=79 No Yes inatalia.sierra@gmail.com Isabel Natalia Sierra Garcia No Engineered Lab enrichment Anaerobic media Defined media Unclassified Laboratory microcosms 54.97825278 -1.61778056 45042890 75861 42 0 50 0 0.0 Metagenome 3300047452 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_190625.NP1 DOE Joint Genome Institute (JGI) 3300047452 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 254069394 538431 205 18 318 30 Unrestricted 10.03 Metagenome 3300046049 *Microbiome Permanent Draft Halite microbial communities from Atacama Desert, Chile Halite microbial communities from Salar Grande, Atacama Desert, Chile - SGT3 Novogene 3300046049 Metagenome Analysis metaWRAP v. 1.3.2 No Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Halite Rock-dwelling (endoliths) Unclassified Halite -20.953 -70.019 146168226 179254 20 1 27 2 0.0 Metagenome 3300038970 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-06-2_at_0-1_cm Genome Quebec 3300038970 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89673 -73.73461 635057045 1659875 715 60 1601 126 0.0 Metagenome 3300022938 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_13_MG DOE Joint Genome Institute (JGI) 3300022938 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Inlet Marine Unclassified seawater 48.64 -123.5 747741953 1900295 768 19 1357 38 SRX4480174 Unrestricted 8.2 Metagenome 3300011377 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00300 Weill Cornell Medical College 3300011377 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.76 -73.98 10527175 18409 5 0 14 0 SRX822273 0.0 Metagenome 7000000011 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2 of subject 159753524 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000011 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Ivanova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 119044490 178792 0 0 0 0 0.0 Metagenome 3300025693 *Microbiome Permanent Draft Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico and Hudson Canyon, USA Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM15C Gulf of Mexico (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025693 Metagenome Analysis spades v. 3.11.1 Yes Yes mcredmond@uncc.edu Molly C. Redmond Yes 28871146 Environmental Aquatic Cold seeps Marine Unclassified Methane seep mesocosm 27.37 -90.57 508918847 898667 292 3 327 2 Unrestricted 0.0 Metagenome 3300049601 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA28 DOE Joint Genome Institute (JGI) 3300049601 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 293938742 783027 368 2 686 7 Unrestricted 7.08 Metagenome 3300049997 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2015 IH-HC-9_11cm DOE Joint Genome Institute (JGI) 3300049997 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.3581 19.0481 360434841 608336 296 2 517 3 Restricted 17.11 Metagenome 3300054072 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin01_10_metaG re-annotation DOE Joint Genome Institute (JGI) 3300054072 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 907113193 1862906 419 42 638 83 SRX3291937 0.0 Metagenome 3300046092 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_23 DOE Joint Genome Institute (JGI) 3300046092 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9802 -106.9905 189940433 549646 926 8 2000 11 Unrestricted 0.0 Metagenome 3300029217 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002661-50 Beijing Genomics Institute (BGI) 3300029217 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 149818943 186572 108 0 172 0 0.0 Metagenome 3300043088 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver small intestine microbial communities from Maple Ridge, British Columbia, Canada - Beaver4Small.Intestine1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043088 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Small intestine Digestive system Unclassified small intestine 49.18 -122.54 384250171 620982 3 2 9 20 SRX8345948 Unrestricted 16.81 Metagenome 3300070958 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Agroecosystem, Kansas, USA - KONA_003-M-20190617-COMP-DNA1 3300070958 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Agricultural land Soil 943045 3308 11 0 24 1 0.0 Metagenome 3300070617 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_045-O-20180723-COMP-DNA1 3300070617 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 171939 590 2 2 8 1 0.0 Metagenome 3300001109 *Microbiome Permanent Draft Thermal spring microbial communities from Shoshone Spring, Yellowstone National Park 04YSMH020 3300001109 Metagenome Analysis released by JGI data releasing policy No Yes cvesbach@unm.edu Cristina Takacs-Vesbach No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Thermal spring 44.75491405 -110.41586031 4.05 38435298 53929 21 1 28 2 0.0 Metagenome 3300045030 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Plains ecozone, Canada - Lake 04-609 Genome Quebec 3300045030 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 60.836026 -116.656975 1099249742 2556441 675 121 1190 195 0.0 Metagenome 3300032171 *Microbiome Permanent Draft Microbial communities from the deep biosphere Subsurface marine sediment microbial communities from the Pacific Ocean - 1301_5a5b anorthite+bytownite re-assembly Marine Biological Laboratory 3300032171 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Oceanic Marine Sediment Marine subsurface sediement 47.7535 -127.763883 115444016 289879 133 9 204 18 0.0 Metagenome 3300030035 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P102V1 Beijing Genomics Institute (BGI) 3300030035 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 193532450 232080 163 0 219 0 0.0 Metagenome 3300013910 *Microbiome Permanent Draft Synthetic microbial community assembled from nine heterogeneous microorganisms from Italy Synthetic microbial community assembled from nine heterogeneous microorganisms from Italy - 9MM-A Porto Conte Ricerche 3300013910 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 9352929 11550 11 0 10 1 SRX347869 0.0 Metagenome 3300000231 *Microbiome Draft Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- LI09_4 DOE Joint Genome Institute (JGI) 3300000231 Metagenome Analysis released based on JGI ITS Yes Yes jlm80@psu.edu Jennifer Macalady No Environmental Aquatic Groundwater Freshwater Cave water Groundwater 43.383333 12.95 654101350 1509822 341 0 550 1 Unrestricted 0.0 Metagenome 3300027118 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius geniculatus HERON ISLAND.1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027118 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 449422359 395287 6 1 10 2 SRX3340724 Unrestricted 0.0 Metagenome 3300002283 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP09-I3 3300002283 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300006129 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE06Nov07 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006129 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 301823778 762884 209 90 329 138 SRX2565285 Unrestricted 0.0 Metagenome 3300044576 *Microbiome Permanent Draft Marine microbial communities from various hydrothermal vent chimneys in Pacific Ocean Marine hydrothermal vent microbial communities from Ultra No Chi Chi chimney, Urashima Vent Field, Pacific Ocean - 801CCC Western Washington University 3300044576 Metagenome Analysis MegaHIT v. 1.2.9 released by Laura A Murray No Yes lmurray0918@gmail.com Laura Murray No Environmental Aquatic Hydrothermal vents Marine Black smokers Marine hydrothermal vent 13.0 144.0 209464453 438875 210 7 396 2 0.0 Metagenome 3300015156 *Microbiome Permanent Draft Human fecal microbial communities from infant diaper, Dhaka, Bangladesh Human fecal microbial communities from infant diaper, Dhaka, Bangladesh - DMDT001E megaHIT Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300015156 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes dhtaft@ucdavis.edu Diana Taft No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant feces 23.8103 90.4125 36368404 61445 19 1 32 2 0.0 Metagenome 3300000564 *Microbiome Draft Soil microbial communities from Kansas Great Prairie, USA, amended with BrdU Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B DOE Joint Genome Institute (JGI) 3300000564 Metagenome Analysis released based on JGI ITS Yes Yes maude.david@yahoo.fr, janet.jansson@pnnl.gov Maude David, Janet Jansson No Environmental Terrestrial Loam Soil Grasslands Soil 39.100992 -96.608258 66568642 214837 4 1 20 8 Unrestricted 0.0 Metagenome 3300017625 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - G11-04 University of Michigan 3300017625 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.39651 -85.40936 11164775 18423 11 0 11 0 0.0 Metagenome 3300024438 *Microbiome Permanent Draft Vaginal microbial communities from lab mice Vaginal microbial communities from lab mice with HSV-2 infection, Madrid, Spain - G2-S16 treatment D3, day 1 Polytechnic University of Valencia 3300024438 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Vagina Reproductive system Unclassified mice vagina 40.4191094 -3.6725753 745156 1161 0 0 0 0 0.0 Metagenome 3300026660 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_11_5 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026660 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 13403308 17938 17 8 27 12 SRX2924867 Unrestricted 0.0 Metagenome 3300039851 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_059-M-20170706-COMP-DNA1 Battelle Memorial Institute 3300039851 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 109018024 290571 137 16 317 19 0.0 Metagenome 3300040312 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dead Lake, Ozarks Complex, AL, USA - DELA_014-M-20160824-COMP-DNA1 Battelle Memorial Institute 3300040312 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 32.54172 -87.80389 5510467 17587 34 5 62 8 0.0 Metagenome 3300043556 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield ecozone, Canada - Lake 06-295 Genome Quebec 3300043556 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 56.639327 -100.233106 1170875375 2966883 458 98 726 215 0.0 Metagenome 3300027165 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF035 (SPAdes) DOE Joint Genome Institute (JGI) 3300027165 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 37179841 106590 35 4 61 10 SRX2014380 Unrestricted 0.0 Metagenome 3300071134 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_002-M-20190717-COMP-DNA1 3300071134 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 22202281 64747 48 4 110 5 0.0 Metagenome 3300032056 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS65 DOE Joint Genome Institute (JGI) 3300032056 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 324420694 654671 245 0 295 0 SRX6411891 Unrestricted 137.85 Metagenome 3300031182 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Sorghum-adapted microbial communities enriched on wild type (WT) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - WT_Day14_4 DOE Joint Genome Institute (JGI) 3300031182 Metagenome Analysis spades v. 3.12.0 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 151447472 209817 224 0 249 0 SRX5661263 Unrestricted 102.73 Metagenome 3300041957 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS903_Marker113_DNA SE_2020 3300041957 Metagenome Analysis IDBA_UD v. 1.1.3 released by JGI data releasing policy No Yes cfortunato@gmail.com; elks@mit.edu Caroline Fortunato; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.92274 -129.988104 181581364 409717 337 5 554 12 0.0 Metagenome 3300026964 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 P3 (4) (SPAdes) DOE Joint Genome Institute (JGI) 3300026964 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 72441881 111431 44 0 67 0 SRX3311542 Unrestricted 0.0 Metagenome 3300036951 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - AD1 26 III DOE Joint Genome Institute (JGI) 3300036951 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 532750626 960620 522 9 834 19 SRX8360039 Unrestricted 23.89 Metagenome 3300047383 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_130626.NP1 DOE Joint Genome Institute (JGI) 3300047383 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 939657191 1931035 520 160 790 242 Unrestricted 12.57 Metagenome 3300041665 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_480 MetaG AgResearch, New Zealand, Mosgeil 3300041665 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 2243294969 4573908 373 30 1292 49 0.0 Metagenome 3300051644 *Microbiome Permanent Draft Sediment microbial communities from various environments and locations in Europe Sediment microbial communities from Pant River, United Kingdom - PantS (IMG v5.1) (version 2) DOE Joint Genome Institute (JGI) 3300051644 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes o.eyice@qmul.ac.uk Ozge Eyice No Environmental Aquatic River Freshwater Sediment Sediment 52.0033 0.3211 598617081 1616590 935 4 1712 5 Unrestricted 0.0 Metagenome 3300010367 *Microbiome Permanent Draft Soil microbial communities from Mediterranean grasslands, California Grasslands soil microbial communities from Hopland, California, USA - 2 Assembly 2016 (version 4) DOE Joint Genome Institute (JGI) 3300010367 Metagenome Analysis RayMeta, Megahit released based on JGI ITS No Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 38.99297339 -123.0674491 933888419 1089184 88 12 57 12 SRX1978715, SRX1978704, SRX1978714, SRX1978706, SRX1978705, SRX1978716, SRX1978707, SRX1978709, SRX2041365, SRX2041364, SRX1978711, SRX1978710, SRX1978713 Unrestricted 0.0 Metagenome 3300049276 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA29 DOE Joint Genome Institute (JGI) 3300049276 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 540597998 1301205 495 4 993 11 Unrestricted 7.96 Metagenome 3300027822 *Microbiome Permanent Draft Marine microbial communities from the Santa Barbara Channel oil seeps Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027822 Metagenome Analysis spades v. 3.11.1 Yes Yes mhess@ucdavis.edu Matthias Hess Yes 24958360, 25197496 Environmental Aquatic Oil seeps Marine Unclassified Marine 34.39225 -119.845662 1114040464 2056644 664 7 943 6 SRX560108 Unrestricted 0.0 Metagenome 3300037840 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_7 DOE Joint Genome Institute (JGI) 3300037840 Metagenome Analysis metaspades v. 3.13.0 Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 2780598776 4327437 408 14 646 25 SRX9140452 Unrestricted 13.51 Metagenome 3300003473 *Microbiome Permanent Draft Wetland sediment microbial communities from Dorn Creek, Dane County, Wisconsin, USA, enriched for Fe-cycling cultures Fe-reducing enrichment culture from wetland. Sample 3 with anaerobic and aerobic cycling. 3300003473 Metagenome Analysis CLC Genomic Workbench released by JGI data releasing policy Yes Yes jmejia@wisc.edu Jacqueline Mejia No Environmental Aquatic Creek Freshwater Sediment Wetland sediment 43.135131 -89.441777 476662606 1069790 303 0 635 3 0.0 Metagenome 3300026044 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026044 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.052479 -121.7687 64480459 161747 162 0 283 1 SRX7181212 Unrestricted 0.0 Metagenome 3300001055 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN338 DOE Joint Genome Institute (JGI) 3300001055 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 59291 206 9 0 14 0 SRX1986561 Unrestricted 0.0 Metagenome 2016842001 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP3 Monarch Geyser, Norris Geyser Basin v2 (version 2) DOE Joint Genome Institute (JGI) 2016842001 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23720654 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.7242925 -110.7056131 4 16091989 23521 10 0 13 0 Unrestricted 0.0 Metagenome 3300031251 *Microbiome Permanent Draft Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG DOE Joint Genome Institute (JGI) 3300031251 Metagenome Analysis spades v. 3.12.0 Yes Yes rbneum@uw.edu Rebecca Neumann No Host-associated Plants Rhizosphere Roots Soil rhizosphere 47.6516 -122.3045 1222600317 2565808 793 33 1287 58 SRX5345979 Unrestricted 11.92 Metagenome 3300010389 *Microbiome Permanent Draft Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf Oregon State University 3300010389 Metagenome Analysis MetaSPAdes released per JGI data release policy No Yes michaelgraw@gmail.com Michael Graw No Environmental Aquatic Cold seeps Marine Sediment marine methane seep sediment 38.05018333 -73.82193333 1465198058 4126833 701 37 1182 91 0.0 Metagenome 3300021264 *Microbiome Permanent Draft Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States - Hamp_Cave_1 DOE Joint Genome Institute (JGI) 3300021264 Metagenome Analysis spades v. 3.11.1-check Yes Yes zachary.freedman@mail.wvu.edu Zachary Freedman No Environmental Terrestrial Surface mine Soil Reclaimed soil 39.458 -79.073 22028185 66848 96 5 190 8 SRX4029906 Unrestricted 7.35 Metagenome 3300048034 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_140504.NP1 DOE Joint Genome Institute (JGI) 3300048034 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 766182094 1657996 495 116 702 193 Unrestricted 12.78 Metagenome 3300009010 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB136-I DOE Joint Genome Institute (JGI) 3300009010 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.299 -156.61 70790116 159718 154 2 229 5 SRX2896615, SRX2896614 Unrestricted 0.0 Metagenome 3300038547 *Microbiome Permanent Draft Oyster larvae and tank water microbial communities from oyster tank in Dauphin Island, Alabama, USA Water microbial communities from oyster tank in Dauphin Island, Alabama, USA - 103W U.S. Food and Drug Administration 3300038547 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Aquaculture Unclassified Water 30.25 -88.11 10471202 24374 22 0 44 0 0.0 Metagenome 3300040279 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 083B_R1 University of Maryland 3300040279 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.67936111 27.11419444 6789697 15180 24 2 57 1 0.0 Metagenome 3300024517 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_3 DOE Joint Genome Institute (JGI) 3300024517 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Inlet Marine Unclassified seawater 50.0528611 -123.8211389 1273360850 3078221 796 51 1544 82 SRX4480529 Unrestricted 7.75 Metagenome 3300065587 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 786 in Hanna, Alberta, Canada - S00JY_0087 Microbiome Insights 3300065587 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.31527169 -112.0508909 74559613 112703 44 2 99 2 0.0 Metagenome 3300031460 *Microbiome Permanent Draft Rock endolithic microbial communities from Victoria Land, Antarctica Rock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace nord DOE Joint Genome Institute (JGI) 3300031460 Metagenome Analysis spades v. 3.12.0 Yes Yes selbmann@unitus.it Laura Selbmann Yes 32139564 Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock -77.6 161.1 751820237 1015910 75 42 87 46 SRX5225221 Unrestricted 44.8 Metagenome 3300001647 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF043 DOE Joint Genome Institute (JGI) 3300001647 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 14198901 47120 38 3 49 3 SRX2014393 Unrestricted 0.0 Metagenome 3300000380 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from University of Liverpool Illumina_500pg_assembled_park University of Liverpool 3300000380 Metagenome Analysis Meta-IDBA released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 10226515 27019 97 0 173 0 0.0 Metagenome 7000000532 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159166850 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000532 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 139999389 238266 0 0 0 0 0.0 Metagenome 3300013614 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100780 University of Pennsylvania 3300013614 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4480854 11730 25 7 37 11 SRX756073 0.0 Metagenome 3300057192 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2016-0041 DOE Joint Genome Institute (JGI) 3300057192 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.762 -83.33 527999736 1125653 385 164 673 258 Unrestricted 28.22 Metagenome 3300043716 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - II_P72_A100 DOE Joint Genome Institute (JGI) 3300043716 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.1695 -62.8322 811034177 2280603 609 8 1194 23 Unrestricted 7.32 Metagenome 3300029533 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P114V6 Beijing Genomics Institute (BGI) 3300029533 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 65501524 76310 57 0 89 0 0.0 Metagenome 3300047529 *Microbiome Permanent Draft Floating fern leaf microbial communities from various locations Floating fern leaf microbial communities from Tristan da Cunha, Saint Helena - 1527_IRRI DOE Joint Genome Institute (JGI) 3300047529 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dave.armitage@gmail.com David Armitage No Host-associated Plants Phylloplane/Leaf Phyllosphere Endophytes Leaf -37.3023 -12.6783 20197576 26296 10 5 19 7 Unrestricted 833.69 Metagenome 3300012140 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT690_2 DOE Joint Genome Institute (JGI) 3300012140 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9226 -106.9511 117206930 282872 198 27 433 42 SRX3368949 Unrestricted 0.0 Metagenome 3300049747 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB9 DOE Joint Genome Institute (JGI) 3300049747 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 161542393 432018 438 11 791 16 Unrestricted 7.8 Metagenome 3300003278 *Microbiome Permanent Draft Down-flow hanging sponge reactor microbial communities from the University of Illinois at Urbana-Champaign, USA Down-flow hanging sponge reactor microbial communities from the University of Illinois at Urbana-Champaign, USA - U2-648F-DHS 3300003278 Metagenome Analysis Newbler released by JGI data releasing policy No Yes nkim41@illinois.edu Kim, Na Kyung Kim No Engineered Bioreactor Sludge DHS reactor Unclassified Down-flow hanging sponge reactor 40.114056 -88.226756 8.5 184077440 181397 56 7 90 9 0.0 Metagenome 3300006631 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2014_1_29 DOE Joint Genome Institute (JGI) 3300006631 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 30510134 106274 99 8 183 10 SRX2924864 Unrestricted 0.0 Metagenome 3300051387 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - HDCcR1D-21 DOE Joint Genome Institute (JGI) 3300051387 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 1007628398 1790262 1016 105 1604 148 Unrestricted 17.6 Metagenome 3300028951 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 383_B Beijing Genomics Institute (BGI) 3300028951 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 10020588 10076 7 0 5 0 ERX491118 0.0 Metagenome 3300038964 *Microbiome Permanent Draft Hot spring cyanobacterial microbial mat communities from Nakabusa, Japan Hot spring cyanobacterial microbial mat communities from Nakabusa, Japan - Oxygenic Japan Food Analysis and Biotechnology Company (FASMAC) 3300038964 Metagenome Analysis SPAdes Genome Assembler v. 3.7.1 released by JGI data releasing policy Yes Yes vera.thiel@dsmz.de Vera Thiel No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring 36.3925 137.74778 8.5 320289242 442937 179 1 245 1 0.0 Metagenome 3300048537 *Microbiome Permanent Draft Marine and freshwater sediment microbial communities from various locations Marine sediment microbial communities from Mediterranean Sea - Mediterranean_Core_1_16-20_cm DOE Joint Genome Institute (JGI) 3300048537 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes smtechtm@mtu.edu Stephen Techtmann No Environmental Aquatic Sediment Marine Unclassified Marine sediment 31.971 30.142 345369596 1002536 449 0 868 1 Unrestricted 6.33 Metagenome 3300002149 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2 DOE Joint Genome Institute (JGI) 3300002149 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 298185379 778692 801 26 1388 40 SRX1991816 Unrestricted 0.0 Metagenome 3300028743 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E3_4 DOE Joint Genome Institute (JGI) 3300028743 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 745029938 1789264 415 45 682 68 SRX5356665 Unrestricted 0.0 Metagenome 3300035664 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Oct2014-rr0194 DOE Joint Genome Institute (JGI) 3300035664 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1370936792 2702821 699 171 1105 285 SRX8208789 Unrestricted 11.08 Metagenome 3300042185 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0515W_E14_080116_2592 DOE Joint Genome Institute (JGI) 3300042185 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.9457 -103.6985 198936749 531571 228 20 374 23 Unrestricted 7.74 Metagenome 3300025651 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-8-D (SPAdes) DOE Joint Genome Institute (JGI) 3300025651 Metagenome Analysis spades v. 3.11.1 Yes Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 397215822 808814 271 35 384 48 SRX2568496 Unrestricted 0.0 Metagenome 3300004258 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 128_HOW14 DOE Joint Genome Institute (JGI) 3300004258 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 118178433 251319 60 0 123 0 SRX2722001 Unrestricted 0.0 Metagenome 3300048811 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 P2 1-5 DOE Joint Genome Institute (JGI) 3300048811 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3534 19.0472 736598544 1142734 186 8 296 20 Restricted 11.69 Metagenome 3300008115 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-100-LTR University of Michigan 3300008115 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7635 -83.3309 8.835 245297386 413120 130 70 179 108 0.0 Metagenome 3300042073 *Microbiome Permanent Draft Forest and sugarcane field soil microbial communities from Santa Rita do Passa , Quatro, Sao Paulo, Brazil Soil microbial communities from sugarcane field in Santa Rita do Passa , Quatro, Sao Paulo, Brazil - SUG-D_1 UNESP-FCAV 3300042073 Metagenome Analysis Custom JGI assembly. Yes Yes No Environmental Terrestrial Unclassified Soil Agricultural land Soil -21.708519 -47.582469 11675760 31795 24 0 33 0 SRX9176013 0.0 Metagenome 3300013986 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00762 Weill Cornell Medical College 3300013986 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.73 -73.98 12852188 18426 4 0 10 0 SRX822728 0.0 Metagenome 3300030464 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces viral communities from colorectal cancer patient in Houston, USA - MG100081 University of Michigan 3300030464 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 29.76 -95.37 628054 1222 4 0 3 0 0.0 Metagenome 3300020451 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996) CEA Genoscope 3300020451 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 35.7956 -37.0998 1387957015 3441274 583 61 1056 114 0.0 Metagenome 3300026547 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0927_05_20cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026547 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 895958057 1634316 558 8 999 18 SRX2519713 Unrestricted 0.0 Metagenome 3300001384 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 53-3 shallow-072012 DOE Joint Genome Institute (JGI) 3300001384 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 58832366 149871 63 17 116 24 SRX1987657 Unrestricted 0.0 Metagenome 3300046733 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_180411.NP2 DOE Joint Genome Institute (JGI) 3300046733 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 553254316 1156366 296 41 397 57 Unrestricted 16.74 Metagenome 3300014601 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01356 Weill Cornell Medical College 3300014601 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.85 -73.82 25305336 37415 9 0 20 0 SRX823296 0.0 Metagenome 3300052900 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Colorado, USA - CP_H1_S2 DOE Joint Genome Institute (JGI) 3300052900 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 39.93776 -105.96326 115027150 229144 322 34 688 47 Unrestricted 28.24 Metagenome 3300037397 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10CT5 DOE Joint Genome Institute (JGI) 3300037397 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 712938448 1834658 882 47 1515 71 SRX9140860 Unrestricted 6.11 Metagenome 3300009765 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico pink nodule DOE Joint Genome Institute (JGI) 3300009765 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Host-associated Plants Nodule Roots Unclassified Root nodule 19.09098 -98.87936 563610381 813125 940 3413 1736 6724 SRX3006952 Unrestricted 0.0 Metagenome 3300020260 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000405 (ERX556087-ERR599025) CEA Genoscope 3300020260 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -29.5123 37.8586 195748667 515299 271 22 461 52 0.0 Metagenome 3300051369 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - HDCR2C-14 DOE Joint Genome Institute (JGI) 3300051369 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 159260466 240093 141 4 202 6 Unrestricted 102.21 Metagenome 3300053139 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere DOE Joint Genome Institute (JGI) 3300053139 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.58807 -123.194072 766090569 1560092 433 67 652 92 Unrestricted 13.28 Metagenome 3300045457 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Illinois River, Illinois, USA - NASQAN2011_099 DOE Joint Genome Institute (JGI) 3300045457 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 39.7033 -90.6454 559576659 1381745 611 161 1119 265 Unrestricted 0.0 Metagenome 3300014869 *Microbiome Permanent Draft Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay13, Core 4488-10 , 4-6 cm DOE Joint Genome Institute (JGI) 3300014869 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nd.microbiota@gmail.com Nina Dombrowski Yes 30479325 Environmental Aquatic Hydrothermal vents Marine Sediment marine sediment 27.0154 -111.3798 184609990 407852 258 2 454 5 SRX3779977 Unrestricted 66.38 Metagenome 3300000947 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92 J. Craig Venter Institute (JCVI) 3300000947 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 681735661 2563270 153 48 345 94 0.0 Metagenome 3300000316 *Microbiome Draft Wetland microbial communities from Twitchell Island in the Sacramento Delta Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface Sediment Feb2011 Site B2 Cattail DOE Joint Genome Institute (JGI) 3300000316 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes stringe@lbl.gov, sgtringe@lbl.gov Susannah Tringe Yes 25991679 Environmental Aquatic Wetlands Marine Sediment Wetland 38.10726 -121.648538 -1.6 90589564 284068 350 15 679 22 Unrestricted 0.0 Metagenome 3300070352 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dakota Coteau Field Site, North Dakota, USA - DCFS_006-M-20190729-COMP-DNA1 3300070352 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 7212712 23349 51 3 78 4 0.0 Metagenome 3300009086 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713 DOE Joint Genome Institute (JGI) 3300009086 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 1234028743 2396106 1302 193 2078 341 SRX2753522 Unrestricted 0.0 Metagenome 2156126000 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - C4 University of Sao Paulo, Virginia Bioinformatics Institute 2156126000 Metagenome Analysis newbler Released per IMG Data Release Policy (March 19 2015) No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 23637931 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 402123073 1007205 718 24 1548 0 0.0 Metagenome 3300011587 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00856 Weill Cornell Medical College 3300011587 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -73.81 31591790 37853 14 0 17 0 SRX822822 0.0 Metagenome 3300013745 *Microbiome Permanent Draft Oral microbial communities from fossilized dental plaque from Dalheim, Germany Oral microbial communities from fossilized dental plaque from Dalheim, Germany - S5-Shot-G12-calc University of Oklahoma 3300013745 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skeletonized remains Remains Dental calculus Fossilized dental plaque 51.565093 8.849015 55608129 153463 112 0 195 1 SRX340014 0.0 Metagenome 3300045738 *Microbiome Permanent Draft Seawater and ice microbial communities from Arctic Ocean Seawater microbial communities from Arctic Ocean - MOSAiC PS122_432 DOE Joint Genome Institute (JGI) 3300045738 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Seawater 87.6362 93.7496 1685857551 2384567 590 77 805 113 Unrestricted 41.21 Metagenome 7000000505 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764508039 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000505 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 18874266 36171 0 0 0 0 0.0 Metagenome 3300040045 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_029-M-20170621-COMP-DNA1 Battelle Memorial Institute 3300040045 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 14212969 42037 44 7 66 10 0.0 Metagenome 3300011569 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00872 Weill Cornell Medical College 3300011569 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.69 -73.86 24200975 36323 11 0 20 0 SRX822838 0.0 Metagenome 3300031853 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Bovine rumen microbial communities from UC Davis, California, United States - 3_2548_0518 DOE Joint Genome Institute (JGI) 3300031853 Metagenome Analysis spades v. 3.12.0 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen 38.5357 -121.7593 2871225888 6027191 3933 57 6018 66 SRX5813565 Unrestricted 13.39 Metagenome 3300038660 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Unnamed Lake 17, Antarctica - #429 Australian Centre for Ecogenomics 3300038660 Metagenome Analysis Spades v. 3.13.0 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.478517 78.1795 417457587 798691 217 27 307 37 0.0 Metagenome 3300035040 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B3.8_Sample3.Rodeo8.Well1209 DOE Joint Genome Institute (JGI) 3300035040 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 286815649 449069 246 0 417 1 SRX8353270 Unrestricted 33.39 Metagenome 3300025022 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG07_land_8/20/14_0.80 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025022 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 646148962 1223929 605 10 921 22 SRX2725931 Unrestricted 0.0 Metagenome 3300011355 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01077 Weill Cornell Medical College 3300011355 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.97 10504481 17428 7 0 11 0 SRX823032 0.0 Metagenome 2084038003 *Microbiome Permanent Draft Acid mine drainage microbial communities from Yunfu, Dabaoshan, and Foukou, China, of pyrites, lead-zinc tailings, and polymetallic ore Acid Mine Drainage metagenome from Yunfu pyrites lake Sun Yat-Sen University 2084038003 Metagenome Analysis released per JGI data release policy No Yes lishjin@student.sysu.edu.cn Sheng-Jin Li No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 23.1333 113.2667 2.5 9582362 16020 4 0 11 0 0.0 Metagenome 3300013896 *Microbiome Permanent Draft Coral viral communities from the Great Barrier Reef, Australia Coral viral communities from the Great Barrier Reef, Australia - Pocillopora damicornis (chloroform-treated) - PDam_CFM_DNA Australian Institute of Marine Science 3300013896 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral tissue 8107781 17301 0 0 0 3 SRX503390 0.0 Metagenome 3300023246 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1008 DOE Joint Genome Institute (JGI) 3300023246 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 153939570 376185 104 0 173 5 SRX4397248 Unrestricted 9.29 Metagenome 3300040657 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Moab, Southern Rockies & Colorado Plateau, UT, USA - MOAB_002-M-20170522-COMP-DNA1 Battelle Memorial Institute 3300040657 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.24833 -109.38827 1556081 4959 18 0 39 1 0.0 Metagenome 3300009319 *Microbiome Permanent Draft Sediment microbial communities from Kanawha River near Charleston, West Virginia, USA Sediment microbial communities from Kanawha River near Charleston, West Virginia, USA - RSB Oklahoma Medical Research Foundation 3300009319 Metagenome Analysis Ray Meta v. 2.0.1 Kmer 31 released per JGI data release policy No Yes huberdh@wvstateu.edu David Huber No Environmental Aquatic River Freshwater Sediment River sediment 38.372804 -81.696812 4981692 26715 14 1 53 1 0.0 Metagenome 3300002488 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - ETNP_2_60 DOE Joint Genome Institute (JGI) 3300002488 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 18.92 -108.7999 262953193 639718 24 1 47 2 SRX2557363 Unrestricted 0.0 Metagenome 3300050323 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_91 DOE Joint Genome Institute (JGI) 3300050323 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -76.91 160.935 462321435 679057 86 44 92 57 SRX18235983 Restricted 37.04 Metagenome 2100351001 *Microbiome Permanent Draft Coastal water and sediment microbial communities from Arctic Ocean, off the coast from Alaska Marine sediment microbial communities from Arctic Ocean, off the coast from Alaska - sample from low methane PC12-247-20cm DOE Joint Genome Institute (JGI) 2100351001 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes kirchman@cms.udel.edu, kirchman@udel.edu David Kirchman No Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Coastal water and sediment 74.0678 -145.54687 312796620 789043 296 32 535 0 Unrestricted 0.0 Metagenome 3300001560 *Microbiome Finished Human fecal microbial communities from the University of Tokyo, Japan, of healthy Japanese infants and adults Human fecal microbial communities from the University of Tokyo - healthy human sample F2-Y, Child, Female 3300001560 Metagenome Analysis PCAP released per Nikos No Yes hattori@k.u-tokyo.ac.jp Hattori M Yes 17916580 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 35.71 139.76 0 0 0 0 0 0 0.0 Metagenome 7000000446 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human throat microbial communities from NIH, USA - visit 1, subject 763496533 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000446 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human 39.0042816 -77.1012173 57476367 111278 0 0 0 0 SRX024936, SRX098536 0.0 Metagenome 3300059750 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1551A-02 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059750 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.187 -123.8837 178565209 379328 201 25 298 26 SRX2753725 Unrestricted 0.0 Metagenome 3300005371 *Microbiome Permanent Draft Marine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica Marine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica - Summer Sample 10335 DOE Joint Genome Institute (JGI) 3300005371 Metagenome Analysis LUCY, PGA Assembler No Yes alison.murray@dri.edu Alison Murray No Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Marine -64.067 -64.767 1866435 1944 16 0 11 0 0.0 Metagenome 3300024233 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T0 DOE Joint Genome Institute (JGI) 3300024233 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 273372211 593489 325 4 518 4 SRX4415302, SRX7705521 Unrestricted 0.0 Metagenome 3300046679 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere DOE Joint Genome Institute (JGI) 3300046679 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1216 -123.2701 901010850 1419646 280 101 423 115 Unrestricted 12.53 Metagenome 3300006096 *Microbiome Permanent Draft Petroleum reservoir microbial communities from Reconcavo Basin, Brazil, analyzing oil degradation Petroleum reservoir microbial communities from Reconcavo Basin, Brazil, analyzing oil degradation - Bahia-well BA-2 3300006096 Metagenome Analysis Spades released by JGI data releasing policy No Yes inatalia.sierra@gmail.com Isabel Natalia Sierra Garcia No Environmental Terrestrial Oil Oil reservoir Unclassified Petroleum reservoir -12.2 -38.11 71419684 144969 26 2 55 4 0.0 Metagenome 3300014887 *Microbiome Permanent Draft Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay17, Core 4571-4, 12-15 cm DOE Joint Genome Institute (JGI) 3300014887 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nd.microbiota@gmail.com Nina Dombrowski Yes 30479325 Environmental Aquatic Hydrothermal vents Marine Sediment marine sediment 27.0154 -111.3798 924399502 2242889 942 4 1500 11 SRX3779980 Unrestricted 35.16 Metagenome 3300055141 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_70-s34 day 210 DOE Joint Genome Institute (JGI) 3300055141 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1379480784 1998179 235 175 305 188 Unrestricted 29.96 Metagenome 3300049026 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - C18_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049026 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 503342960 1136625 550 10 1053 16 Unrestricted 0.0 Metagenome 3300037502 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from deep shales in Oklahoma, United States - RB-DM3 DOE Joint Genome Institute (JGI) 3300037502 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back fracking water 35.784 -98.26 872888047 1901319 1068 162 1593 280 Unrestricted 77.14 Metagenome 3300024951 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 93_HOW11 (SPAdes) DOE Joint Genome Institute (JGI) 3300024951 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 74449735 119575 30 0 41 0 SRX2721170 Unrestricted 0.0 Metagenome 3300013729 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00691 Weill Cornell Medical College 3300013729 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.81 -73.95 27613502 38196 14 0 19 0 SRX822658 0.0 Metagenome 3300038713 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample22 King Abdulaziz City for Science and Technology (KACST) 3300038713 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 22.2 37.55 42289652 92986 50 0 85 0 SRX1097589 0.0 Metagenome 3300028014 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE2 DOE Joint Genome Institute (JGI) 3300028014 Metagenome Analysis spades v. 3.11.1 Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 59.9982 10.7894 35128353 102351 113 38 205 72 SRX5271608 Unrestricted 7.25 Metagenome 3300044811 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_24BD DOE Joint Genome Institute (JGI) 3300044811 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.3724 -106.103 1234819401 1993494 307 48 479 67 SRX20650046 Unrestricted 14.19 Metagenome 3300020150 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG DOE Joint Genome Institute (JGI) 3300020150 Metagenome Analysis spades v. 3.10.1 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 3.8381 -73.3194 314536868 746848 402 1 681 4 SRX3936783 Unrestricted 26.41 Metagenome 3300008258 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-3-NA University of Michigan 3300008258 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.8271 -83.1945 8.578 124606600 230330 172 139 260 225 0.0 Metagenome 3300000192 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 60 08/10/11 100m DOE Joint Genome Institute (JGI) 3300000192 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 172923984 370023 127 11 245 19 Unrestricted 0.0 Metagenome 3300034044 *Microbiome Permanent Draft Deception Metagenome Fumarole sediment microbial communities from Fumarole Bay, Deception Island, Antarctica - FBB1 The Brazilian National Council for Scientific and Technological Development (CNPq) 3300034044 Metagenome Analysis IDBA-ud v. 1.1.1 released per Amanda Bendia -- GOLD-1013 No Yes amandagbendia@gmail.com Amanda Bendia No Environmental Aquatic Volcanic Marine Unclassified fumarole sediment -62.96 -60.71 119734800 154679 65 1 117 2 0.0 Metagenome 3300035433 *Microbiome Permanent Draft Bioreactor microbial communities from dechlorination culture samples - Genome Institute of Singapore Bioreactor microbial communities from dechlorination culture samples - Genome Institute of Singapore - CG5-PCE Genome Institute of Singapore 3300035433 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Bioreactor Unclassified Unclassified Unclassified Bioreactor 30796385 35948 19 0 24 0 SRX392471 0.0 Metagenome 3300026472 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Leaf surface microbial communities from wheat plants in UC Gill Tract Community Farm, Albany, California, United States - DLSL W.R1 DOE Joint Genome Institute (JGI) 3300026472 Metagenome Analysis spades v. 3.11.1 Yes Yes icelab@berkeley.edu Steven Lindow No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf surface 37.8864 -122.2981 283273311 434518 141 1 188 0 SRX5295448, SRX5295447 Unrestricted 0.0 Metagenome 3300044537 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - DMB5_3SRT_A DOE Joint Genome Institute (JGI) 3300044537 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35894622 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 268684536 441903 315 5 377 7 SRX12654472 Unrestricted 60.14 Metagenome 3300039163 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Natural salt marsh sediment microbial communities from Fingringhoe Range, United Kingdom - S FRNM 2A University of York 3300039163 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Natural salt marsh sediment 51.831817 0.9687 54133343 169264 119 0 222 1 0.0 Metagenome 3300005217 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailC_D2 DOE Joint Genome Institute (JGI) 3300005217 Metagenome Analysis Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.107536 -121.649704 1075822457 3719848 1313 49 2717 93 SRX7144830 Unrestricted 0.0 Metagenome 3300005864 *Microbiome Permanent Draft Salt marsh microbial communities from Little Sippewissett, Woods Hole, MA that are anoxygenic and photosynthetic Anoxygenic and phototrophic microbial communities from Little Sippewissett salt marsh, Woods Hole, MA - SCQ2a Marine Biological Laboratory 3300005864 Metagenome Analysis CLC released per JGI data release policy No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Intertidal zone Marine Salt marsh marine 41.5758508 -70.635807 11634881 14667 3 0 7 0 0.0 Metagenome 3300070431 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Mountain Lake Biological Station, Virginia, USA - MLBS_067-O-20180612-COMP-DNA1 3300070431 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 61072661 170334 63 3 132 12 0.0 Metagenome 3300027996 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_6_MG DOE Joint Genome Institute (JGI) 3300027996 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Inlet Marine Unclassified seawater 48.58 -123.5 1207880817 3029246 1164 148 1953 234 SRX5244017 Unrestricted 8.68 Metagenome 3300002570 *Microbiome Permanent Draft Ridgeia piscesae microbial communities from Northeast Pacific Ocean hydrothermal vents Host-associated microbial community of the tubeworm Ridgeia piscesae from hydrothermal vents Sample -index 10 (Axial LF) Canada's Michael Smith Genome Sciences Centre 3300002570 Metagenome Analysis released per JGI data release policy No Yes maepz@hotmail.com Maeva Perez, maeva perez No Host-associated Annelida Trophosome Intracellular endosymbionts Unclassified Ridgeia piscesae 47.933377 -129.966914 188970549 547367 5 7 9 2 0.0 Metagenome 3300016466 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water reservoir in Singapore - WB_Site 2, Oct Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016466 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Lake Freshwater Unclassified freshwater 1.28 103.74 115281831 151251 31 6 31 12 0.0 Metagenome 3300041837 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - C_35_wk_5 DOE Joint Genome Institute (JGI) 3300041837 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9936 -107.068 167925679 448441 186 15 371 31 SRX14809850 Unrestricted 7.16 Metagenome 3300012579 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100588 University of Pennsylvania 3300012579 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 21092320 31506 29 0 54 0 SRX756166 0.0 Metagenome 3300004168 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 38_LOW7 DOE Joint Genome Institute (JGI) 3300004168 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 97162348 238569 55 3 99 1 SRX2720522 Unrestricted 0.0 Metagenome 3300036831 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in New South Wales, Australia - Pf_9 DOE Joint Genome Institute (JGI) 3300036831 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil -34.5 150.0 2228520778 3812758 662 125 1068 173 SRX8386443 Unrestricted 16.25 Metagenome 3300036517 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C5-1C DOE Joint Genome Institute (JGI) 3300036517 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 190961010 587485 414 17 678 17 SRX8789475 Unrestricted 4.89 Metagenome 3300045248 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_1_B DOE Joint Genome Institute (JGI) 3300045248 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 136195560 167328 66 1 90 3 Unrestricted 135.94 Metagenome 3300041511 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_12 MetaG AgResearch, New Zealand, Mosgeil 3300041511 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Unclassified Roots Unclassified White clover root -43.648506 172.343549 1238650888 2454971 304 47 1047 104 0.0 Metagenome 3300013235 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100245 University of Pennsylvania 3300013235 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 10586878 25479 7 0 13 0 SRX756656 0.0 Metagenome 3300021373 *Microbiome Permanent Draft Coastal seawater microbial communities from Pivers Island, North Carolina, United States Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282 DOE Joint Genome Institute (JGI) 3300021373 Metagenome Analysis spades v. 3.11.1-check Yes Yes dana.hunt@duke.edu Dana Hunt No Environmental Aquatic Coastal Marine Unclassified seawater 34.7181 -76.6707 994422125 2014010 613 254 856 402 SRX4010398 Unrestricted 15.84 Metagenome 3300012441 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100511 University of Pennsylvania 3300012441 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 7312242 19389 32 20 57 38 SRX756243 0.0 Metagenome 3300038553 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Hormoscilla sp. CMT-3BRIN-NPC48 and co-occurring heterotrophs from soil crust from Clark Mountains Wilderness, California, United States - 20190625_12A DOE Joint Genome Institute (JGI) 3300038553 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Soil crust Soil Biological Soil crust 35.5039 -115.6922 26007452 29769 7 1 8 0 SRX9404610 Unrestricted 474.54 Metagenome 3300031672 *Microbiome Permanent Draft Soil microbial communities from Risofladan, Vaasa, Finland Soil microbial communities from Risofladan, Vaasa, Finland - OX-2 DOE Joint Genome Institute (JGI) 3300031672 Metagenome Analysis spades v. 3.12.0 Yes Yes eva.hogfors-ronnholm@novia.fi Eva Hogfors-Ronnholm Yes Environmental Terrestrial Coastal area Soil Acid sulfate soil soil 63.0472 21.7116 1608526525 2659625 606 11 896 14 SRX5356262 Unrestricted 33.93 Metagenome 3300046304 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_41 DOE Joint Genome Institute (JGI) 3300046304 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9703 -106.997 329959615 874673 1204 4 2349 7 Restricted 0.0 Metagenome 3300017580 *Microbiome Permanent Draft Bras del Port Julio 2014 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CR30 July 2014 University of Valencia 3300017580 Metagenome Analysis idba.1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Non marine hypersaline water 38.1922 -0.5918 44312846 134729 15 0 27 0 0.0 Metagenome 3300043341 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-432 Genome Quebec 3300043341 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 53.543962 -109.095452 1252099894 2786251 458 70 716 122 0.0 Metagenome 3300002125 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Cubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4 DOE Joint Genome Institute (JGI) 3300002125 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes brune@mpi-marburg.mpg.de Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 0.2917 34.856 1294769701 3518639 837 30 1490 34 SRX3315623, SRX3315622 Unrestricted 0.0 Metagenome 3300039931 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_002-O-20160718-COMP-DNA1 Battelle Memorial Institute 3300039931 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 21787548 62094 93 20 174 32 0.0 Metagenome 3300039776 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, Pacific Southwest, CA, USA - SJER_025-O-20170315-COMP-DNA1 Battelle Memorial Institute 3300039776 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.10878 -119.73228 37278160 107235 212 50 373 103 0.0 Metagenome 3300013328 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100591 University of Pennsylvania 3300013328 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9123906 19580 18 8 25 16 SRX756163 0.0 Metagenome 3300069223 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_046-O-20170621-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069223 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 14449370 45245 87 14 140 26 0.0 Metagenome 3300047545 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Arapahoe, Wyoming, United States - littlewindriver_2019_sw_WHONDRS-S19S_0009 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047545 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 42.9875 -108.3982 416577719 642827 162 33 253 56 Unrestricted 0.0 Metagenome 3300020332 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX555956-ERR598975) CEA Genoscope 3300020332 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 18.49 39.8483 258450472 678404 314 41 526 73 0.0 Metagenome 3300044465 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_252 DOE Joint Genome Institute (JGI) 3300044465 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 710925337 1643384 458 8 876 15 Unrestricted 7.85 Metagenome 3300001653 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF041 DOE Joint Genome Institute (JGI) 3300001653 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 9168459 30045 43 2 73 4 SRX2014387 Unrestricted 0.0 Metagenome 3300049237 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB14 DOE Joint Genome Institute (JGI) 3300049237 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 199520986 519983 410 7 796 11 Unrestricted 35.51 Metagenome 3300041943 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from the Rocky Mountain Biological Laboratory (RMBL), Gothic, Colorado, United States - 2009WM_6W DOE Joint Genome Institute (JGI) 3300041943 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9595 -106.99 78969266 251816 181 10 339 14 SRX14811246 Unrestricted 6.82 Metagenome 3300012848 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched pill bug-associated microbial communities from UW Madison campus, WI, USA - HID1972I_E1 MG DOE Joint Genome Institute (JGI) 3300012848 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 119002155 165341 106 2 151 1 SRX3564590 Unrestricted 0.0 Metagenome 3300014142 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Honduras to Iowa, USA - H3 Iowa State University 3300014142 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 522744 1012 0 4 0 0 SRX1150285 0.0 Metagenome 3300027886 *Microbiome Permanent Draft Agricultural soil microbial communities from Utah and Georgia to study Nitrogen management Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027886 Metagenome Analysis spades v. 3.11.1 Yes Yes jeanette.norton@usu.edu Jeanette Norton No Environmental Terrestrial Agricultural land Soil Unclassified Agricultural soil 41.7655 -111.8143 1832744811 3909469 1367 62 2394 90 SRX2923138 Unrestricted 0.0 Metagenome 2065487002 *Microbiome Permanent Draft Human fecal microbial communities from Baylor College of Medicine, Texas, USA, mock community Human fecal microbial communities from Baylor College of Medicine, Texas, USA, mock community - Mock Staggered Illumina PE Velve Baylor College of Medicine 2065487002 Metagenome Analysis released per JGI data release policy No Yes xqin@bcm.tmc.edu Xiang Qin No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 29.7 -95.38 33349891 62476 48 0 114 0 0.0 Metagenome 3300041063 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - T3D9 IDBA-UD 100x Baseclear 3300041063 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 133208553 186093 175 9 256 13 0.0 Metagenome 3300070838 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_004-M-20170726-COMP-DNA1 3300070838 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 166550859 441320 172 3 318 10 0.0 Metagenome 3300042821 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139 NMDC pilot DOE Joint Genome Institute (JGI) 3300042821 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92028116 -106.94891893 700458532 1736397 482 30 906 51 SRX5354617 0.0 Metagenome 3300025010 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado - Groundwater E2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025010 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 26083755 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.53 -107.78 285899075 474051 231 4 369 4 SRX1668434, SRX764832 Unrestricted 0.0 Metagenome 3300041751 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_46 MetaG AgResearch, New Zealand, Mosgeil 3300041751 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1324036013 2653892 267 25 1004 30 0.0 Metagenome 3300060887 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Guanica State Forest and Biosphere Reserve, Puerto Rico - GUAN_042-M-20210920-comp-1 DOE Joint Genome Institute (JGI) 3300060887 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tropical forest Soil Unclassified Terrestrial soil 17.970725 -66.863969 1415693220 2486121 400 17 779 24 Unrestricted 20.13 Metagenome 3300047406 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Congo River, Brazzaville, Congo - CONGO_053 DOE Joint Genome Institute (JGI) 3300047406 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater -4.3092 15.2356 6010348 18710 40 6 69 5 Unrestricted 50.53 Metagenome 3300069428 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone Northern Range (Frog Rock), Northern Rockies, WY, USA - YELL_048-M-20180712-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069428 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 44.95348 -110.53914 6047676 19725 60 6 103 10 0.0 Metagenome 3300026553 *Microbiome Permanent Draft Army ant gut microbial communities Army ant gut microbial communities from Eciton burchelli, Monteverde, Costa Rica - colony MVEbp2 University of California, Berkeley 3300026553 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy Yes Yes jar337@drexel.edu; yihu.bnu@gmail.com Jacob Russell; Yi Hu No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Army ant gut 10.3 -84.8 208234436 219410 8 93 10 904 0.0 Metagenome 3300015266 *Microbiome Permanent Draft Sludge microbial communities from oil sands tailing ponds in Alberta, Canada - bioreactor enrichment Sludge microbial communities from oil sands tailing ponds in Alberta, Canada - bioreactor enrichment University of Calgary 3300015266 Metagenome Analysis CLC GENOMICS WORKBENCH 8.5 released by JGI data releasing policy No Yes nidal.abu-laban@uni-due.de Nidal Abu Laban No Engineered Bioremediation Benzene Hydrocarbon Bioreactor sludge 27.6648 -81.5158 45285707 58886 15 0 27 0 0.0 Metagenome 3300007944 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 764588959 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007944 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 1889091 2930 6 0 9 0 SRX024052 0.0 Metagenome 3300009651 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-063 DOE Joint Genome Institute (JGI) 3300009651 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Permafrost soil 68.6137 -149.3144 423206276 906847 571 6 1017 13 SRX2761077 Unrestricted 0.0 Metagenome 3300013922 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00829 Weill Cornell Medical College 3300013922 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.73 -73.99 16894751 28779 14 0 17 0 SRX822795 0.0 Metagenome 3300044213 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Alima River, Oyo, Congo - CONGO_007 DOE Joint Genome Institute (JGI) 3300044213 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater -1.1578 15.9672 259240394 610063 243 34 339 53 Unrestricted 18.17 Metagenome 3300005533 *Microbiome Permanent Draft Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 DOE Joint Genome Institute (JGI) 3300005533 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shadeash@msu.edu, shade.ashley@gmail.com Ashley Shade Yes 30397342 Environmental Terrestrial Unclassified Soil Unclassified Surface soil 40.7999 -76.3402 2210471099 5791649 1424 131 2333 249 SRX2837983 Unrestricted 0.0 Metagenome 3300007064 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge Cinachyra sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - cg23is University of New South Wales 3300007064 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au, e.botte@aims.gov.au; n.webster@aims.gov.au Nicole Webster, Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Cinachyra sp. (marine sponge) -9.8241 150.825833 77597859 177392 40 3 70 2 0.0 Metagenome 3300027255 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1558A-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027255 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2763 -124.0055 171803057 368255 189 8 268 19 SRX2753757 Unrestricted 0.0 Metagenome 3300053783 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_139 DOE Joint Genome Institute (JGI) 3300053783 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9236 -106.9499 249496908 782399 957 4 1829 17 Restricted 0.0 Metagenome 3300013202 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100533 University of Pennsylvania 3300013202 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17134298 25608 14 10 27 18 SRX756221 0.0 Metagenome 3300031933 *Microbiome Permanent Draft Microbial communities from the deep biosphere Deep subsurface microbial communities from shale gas basins in Pennsylvania, USA - 1_Day0 re-assembly Marine Biological Laboratory 3300031933 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Unclassified Deep subsurface Unclassified Deep subsurface 39.898 -79.976 176500357 365625 104 3 216 6 0.0 Metagenome 3300042675 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A39 University of California, Davis 3300042675 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 110714704 331107 201 2 372 2 0.0 Metagenome 3300014791 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS45_6 University of Hohenheim 3300014791 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 123149825 201480 89 0 164 0 0.0 Metagenome 3300037535 *Microbiome Permanent Draft Bacterial communities from sewage treatment works near Birtley, UK Wastewater bacterial communities from sewage treatment works near Birtley, UK - 02 Northumbria University 3300037535 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes martin.spurr@newcastle.ac.uk Martin Spurr No Engineered WWTP Unclassified Wastewater Unclassified wastewater 54.903212 -1.595078 25162875 41347 60 1 93 3 0.0 Metagenome 3300048576 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Wood chips microbial communities from bioreactor in Golden, Colorado, USA - AB_Metals_1 DOE Joint Genome Institute (JGI) 3300048576 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Unclassified Wood chips 39.7555 -105.2211 1025085171 1179231 381 10 522 8 Unrestricted 46.2 Metagenome 3300040320 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_045-O-20170621-COMP-DNA1 Battelle Memorial Institute 3300040320 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 5117405 15892 43 10 67 18 0.0 Metagenome 3300049061 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - H7_B_BS (version 2) DOE Joint Genome Institute (JGI) 3300049061 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 363438386 841436 679 18 1480 29 Unrestricted 0.0 Metagenome 3300057316 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-538 update Genome Quebec 3300057316 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 54.398593 -126.023267 1217699037 2781674 503 159 849 242 0.0 Metagenome 3300035325 *Microbiome Permanent Draft Mouse fecal microbial communities from various locations Fecal microbial communities from mouse strain C57/BL6 in China - MC-0-1 Beijing Genomics Institute (BGI) 3300035325 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 22.5537717 114.0871167 111643061 175882 170 0 272 3 0.0 Metagenome 3300049753 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MB33 DOE Joint Genome Institute (JGI) 3300049753 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 150483296 439015 344 7 755 14 Unrestricted 7.64 Metagenome 3300019928 *Microbiome Permanent Draft Arctic soil viral communities from Stordalen Mire, Sweden Arctic soil viral communities from Stordalen Mire, Sweden - P+N3 DOE Joint Genome Institute (JGI) 3300019928 Metagenome Analysis spades v. SPAdes version: 3.10.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Terrestrial Palsa Soil Mineral soil core arctic soil 68.3526 19.0147 510049 1563 0 0 1 3 SRX5627520 Restricted 0.0 Metagenome 3300025765 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Groundwater microbial communities from Devils Hole, Nevada to study Microbial Dark Matter (Phase II) - Devils Hole (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025765 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; duane.moser@dri.edu Ramunas Stepanauskas; Duane Moser No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 36.43 -116.29 44988848 101703 70 15 121 17 SRX2948573 Unrestricted 0.0 Metagenome 2044078005 *Microbiome Permanent Draft Switchgrass, Maize and Miscanthus rhizosphere microbial communities from University of Illinois Energy Farm, Urbana, IL Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL University of Illinois, Urbana-Champaign 2044078005 Metagenome Analysis No Yes lixz@illinois.edu Xiangzhen Li No Environmental Terrestrial Unclassified Soil Agricultural land Switchgrass, Maize and Miscanthus rhizosphere 40.109 -88.204 18598591 52944 42 0 38 0 0.0 Metagenome 3300037148 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPON1-2-X2 DOE Joint Genome Institute (JGI) 3300037148 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3569 19.0502 514627062 854000 171 5 241 13 SRX8166027 Unrestricted 19.7 Metagenome 3300025718 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska, USA - Barrow Graham LP Incubations 004-31A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025718 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.28381 -156.5985 595170707 1007198 473 5 529 9 SRX1990922 Unrestricted 0.0 Metagenome 3300017756 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 5 SPOT_SRF_2009-10-22 DOE Joint Genome Institute (JGI) 3300017756 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 365081233 797731 144 43 266 75 SRX5471789, SRX5471788, SRX5471787 Unrestricted 0.0 Metagenome 3300022493 *Microbiome Permanent Draft Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain - individual 17 Autonomous University of Barcelona 3300022493 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.38 -0.51 52354973 61599 43 0 48 0 0.0 Metagenome 3300011401 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Georgia, USA - TSGA068 MetaG DOE Joint Genome Institute (JGI) 3300011401 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 33.0108 -81.8997 217139325 423081 158 71 246 106 SRX3539703 Unrestricted 0.0 Metagenome 3300047654 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BT11-06_D100 (version 2) DOE Joint Genome Institute (JGI) 3300047654 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3555 19.0492 221606365 362305 142 31 202 55 Restricted 0.0 Metagenome 3300025272 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025272 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 201830048 281665 89 1 114 2 SRX2770670 Unrestricted 0.0 Metagenome 3300014508 *Microbiome Permanent Draft Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0164 : 64 days incubation Battelle Memorial Institute, Gulf Coast Restoration Organization 3300014508 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Marine 63.43 10.43 35532472 78906 28 5 54 6 0.0 Metagenome 3300025086 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025086 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -12.999 -80.801 304481420 657480 38 0 37 0 SRX2926263 Unrestricted 0.0 Metagenome 3300026713 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO21-D (SPAdes) DOE Joint Genome Institute (JGI) 3300026713 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 14624499 49453 58 3 79 8 SRX2575535 Unrestricted 0.0 Metagenome 3300035238 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2012_1000m DOE Joint Genome Institute (JGI) 3300035238 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 50.0 -145.0 370583826 885240 287 50 514 84 SRX8219448 Unrestricted 14.17 Metagenome 3300002797 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G08K4-12 DOE Joint Genome Institute (JGI) 3300002797 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 135063 464 16 1 24 1 SRX1991267 Unrestricted 0.0 Metagenome 7000000284 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159005010 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000284 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 2518792 6048 0 0 0 0 0.0 Metagenome 3300008453 *Microbiome Permanent Draft Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 virsorter University of Michigan 3300008453 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes duhaimem@umich.edu Melissa Duhaime No Environmental Aquatic Lake Freshwater Unclassified freshwater lake 41.7032 -83.2575 83862097 119069 0 0 0 0 0.0 Metagenome 3300046167 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_PBmetag_190410.NPB DOE Joint Genome Institute (JGI) 3300046167 Metagenome Analysis metaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 588335963 654640 277 11 258 14 Unrestricted 0.0 Metagenome 3300027810 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027810 Metagenome Analysis spades v. 3.11.1 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 78.8669 -3.2286 1124248587 2180737 380 371 431 539 SRX2997873 Unrestricted 0.0 Metagenome 3300031847 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4 DOE Joint Genome Institute (JGI) 3300031847 Metagenome Analysis spades v. 3.13.0 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Bulk soil soil 39.6475 -79.9369 1664342186 4245763 1286 39 2312 53 SRX5809944 Unrestricted 7.54 Metagenome 3300031161 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_5 DOE Joint Genome Institute (JGI) 3300031161 Metagenome Analysis spades v. 3.12.0 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 132753984 191181 201 0 259 0 SRX5661387 Unrestricted 129.03 Metagenome 3300023484 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_75C University of California, Irvine 3300023484 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 62326859 60618 15 0 15 0 0.0 Metagenome 3300042866 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Aug2013-rr0349 DOE Joint Genome Institute (JGI) 3300042866 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1360342683 2031031 451 56 605 72 Unrestricted 17.78 Metagenome 3300037489 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_500m_C5_0cm2cm DOE Joint Genome Institute (JGI) 3300037489 Metagenome Analysis metaspades v. 3.13.0 Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 37.0366 -121.2986 1899017338 3014264 494 18 826 25 SRX9141055 Unrestricted 17.01 Metagenome 3300049199 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - B21_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049199 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 99243594 222621 227 5 398 9 Unrestricted 0.0 Metagenome 3300038472 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-M (v2) (version 2) DOE Joint Genome Institute (JGI) 3300038472 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0475 786915388 1390102 268 9 417 19 SRX8137403, SRX8137402 Unrestricted 0.0 Metagenome 3300040643 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Mid-Atlantic, VA, USA - BLAN_003-M-20170713-COMP-DNA1 Battelle Memorial Institute 3300040643 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Farm Terrestrial soil 39.06026 -78.07164 2149163 6858 21 1 45 4 0.0 Metagenome 3300000953 *Microbiome Permanent Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Kansas Corn soil v3 (version 3) DOE Joint Genome Institute (JGI) 3300000953 Metagenome Analysis Velvet released based on JGI ITS Yes Yes janet.jansson@pnnl.gov Janet Jansson Yes 30158906 Environmental Terrestrial Unclassified Soil Grasslands Soil 39.211666 -96.594768 6.6 1342147687 5393094 4011 90 7419 129 Unrestricted 0.0 Metagenome 3300037467 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from bulk soil in EcoFAB chamber, Walnut Creek, California, United States - Soil-Nitrogen_A SG_5 DOE Joint Genome Institute (JGI) 3300037467 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9315 -122.0212 1828726394 2984400 666 49 973 66 Unrestricted 18.87 Metagenome 3300007640 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 DOE Joint Genome Institute (JGI) 3300007640 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes chenf@umces.edu, chenf@umces.edu; bcampb7@clemson.edu Feng Chen, Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.149325 -75.288339 691748936 1598750 45 0 50 0 SRX3785816, SRX3785815, SRX2745104 Unrestricted 0.0 Metagenome 3300042903 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNPCB064 DOE Joint Genome Institute (JGI) 3300042903 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes viola.krukenberg@montana.edu Viola Krukenberg No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.5702 -110.8053 883870423 1421960 687 5 1093 5 Unrestricted 74.38 Metagenome 3300025319 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 1 (version 2) DOE Joint Genome Institute (JGI) 3300025319 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 26033198 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 1395877549 2940214 993 13 1830 22 SRX1990953 Unrestricted 0.0 Metagenome 3300052794 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_CO_009D DOE Joint Genome Institute (JGI) 3300052794 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0511 10.45713 320299895 842232 384 14 625 40 Unrestricted 9.01 Metagenome 3300029371 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 081_4_28_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029371 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 149087922 194284 210 0 247 0 0.0 Metagenome 3300011808 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00792 Weill Cornell Medical College 3300011808 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.83 -73.93 25930538 40852 29 0 30 0 SRX822758 0.0 Metagenome 3300045443 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-663 Genome Quebec 3300045443 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.450374 -127.400686 1019496450 2112958 433 148 760 244 0.0 Metagenome 3300040196 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_001-M-20170705-COMP-DNA1 Battelle Memorial Institute 3300040196 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 10148539 28907 56 6 94 7 0.0 Metagenome 3300049513 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D25_A_7_control DOE Joint Genome Institute (JGI) 3300049513 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 195388314 485094 408 30 831 57 Unrestricted 21.56 Metagenome 3300017649 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Organic Plus compost microbial communities from Emeryville, California, USA - eDNA 5th pass 37_C BE-Lig OP (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017649 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes JMGladden@lbl.gov John Gladden No Engineered Solid waste Composting Mixed feedstock Commercial compost compost 37.83 -122.29 511004168 748445 531 8 671 24 SRX3901915, SRX3901916 Unrestricted 0.0 Metagenome 3300025558 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025558 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.04565 -121.866287 192215155 397791 159 0 284 0 SRX7142147 Unrestricted 0.0 Metagenome 3300006145 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t14_690P_inflammed - viral_metagenome University of Texas Southwestern Medical Center 3300006145 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 146826601 263851 107 0 148 1 0.0 Metagenome 3300042223 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D174_2 DOE Joint Genome Institute (JGI) 3300042223 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 172294500 239102 113 4 141 8 Unrestricted 97.24 Metagenome 3300000741 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 25AUG2008 hypolimnion DOE Joint Genome Institute (JGI) 3300000741 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300017516 *Microbiome Permanent Draft Bras del Port Mayo 2015 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CM1 May 2015 University of Valencia 3300017516 Metagenome Analysis idba.1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Non-marine hypersaline water 38.1922 -0.5918 53613481 166958 2 0 3 0 0.0 Metagenome 3300030394 *Microbiome Permanent Draft Activated sludge microbial communities from mesophilic anaerobic reactor in Belgium Activated sludge microbial communities from mesophilic anaerobic reactor in Belgium - LL_1 Ku Leuven 3300030394 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Bioreactor Unclassified Anaerobic Unclassified Activated sludge 50.9 4.7 125004208 197606 163 0 217 0 0.0 Metagenome 3300028517 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 4 Selected contigs with viral hallmark genes 2 Autonomous University of Barcelona 3300028517 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 1684016 2537 0 0 0 0 0.0 Metagenome 3300020305 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX556024-ERR599003) CEA Genoscope 3300020305 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 35.5571 -6.5586 149802619 393922 130 4 247 5 0.0 Metagenome 3300056730 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.18W.11 SIP fraction DOE Joint Genome Institute (JGI) 3300056730 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 70814565 136873 72 28 114 42 Unrestricted 9.79 Metagenome 3300000178 *Microbiome Permanent Draft Groundwater microbial communities from Oak Ridge Integrated Field Research Center, Tennessee, that are pristine and uranium contaminated Pristine groundwater from Oak Ridge Integrated Field Research Center, Tennessee (resequenced) DOE Joint Genome Institute (JGI) 3300000178 Metagenome Analysis Multi-kmer (19-31 kmer's) (soapdenovo) released per PI request No Yes jzhou@ou.edu Zhou, Jizhong Yes 20182523, 26583008 Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.11569 -84.248657 7 226623009 629705 186 27 714 64 0.0 Metagenome 3300032238 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime Ecozone, Canada - Lake 07-008 Genome Quebec 3300032238 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.931439 -64.368197 548659338 1097525 334 98 550 185 0.0 Metagenome 3300001190 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes from Oil-contaminated ecosystem in Alberta, Canada Inniskillen 604.3 McGill University 3300001190 Metagenome Analysis released per user request No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Environmental Terrestrial Sediment Oil reservoir Unclassified Hydrocarbon resource environments 56.04 -118.13 3612035 5365 3 0 2 0 0.0 Metagenome 3300005797 *Microbiome Permanent Draft Microbial communities from the saline desert of Little Rann of Kutch, Gujarat, India Microbial communities from the saline desert of Little Rann of Kutch, Gujarat, India - NGS Anand Agricultural University 3300005797 Metagenome Analysis Linker released per JGI data release policy No Yes ssunil48@gmail.com Sunil Bhavsar No Environmental Terrestrial Sand Soil Desert Soil/Sand 24.0833 70.1667 128469765 582270 798 1 1273 19 0.0 Metagenome 3300026498 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A DOE Joint Genome Institute (JGI) 3300026498 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 259069154 615793 236 13 444 35 SRX4801795 Unrestricted 9.93 Metagenome 3300017968 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300017968 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1828264925 3888950 1690 101 2882 149 SRX4072578 Unrestricted 14.74 Metagenome 3300026981 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 67 (SPAdes) DOE Joint Genome Institute (JGI) 3300026981 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 91391974 229518 103 0 189 1 SRX4341314 Unrestricted 0.0 Metagenome 7000000282 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 763678604 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000282 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 144181536 270172 0 0 0 0 0.0 Metagenome 3300038474 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-3-S (v2) (version 2) DOE Joint Genome Institute (JGI) 3300038474 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0467 788906726 1690023 531 13 954 18 SRX8138018, SRX8138017 Unrestricted 0.0 Metagenome 3300017915 *Microbiome Permanent Draft Marine microbial communities from Caribbean coral reef seawater Marine microbial communities from Caribbean coral reef seawater, Cuba - M. cavernosa University of Illinois, Urbana-Champaign 3300017915 Metagenome Analysis MEGAHIT v1.1.1-2-g02102e1 released by JGI data releasing policy No Yes lweber@whoi.edu Laura Weber No Environmental Aquatic Intertidal zone Marine Coral reef seawater 20.77453 -78.91517 1647293 1835 2 6 2 4 0.0 Metagenome 3300028345 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #290 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028345 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 60764464 105136 47 1 88 1 SRX3241780 Unrestricted 0.0 Metagenome 3300045866 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from the Norris Geyser Basin, Yellowstone National Park, WY, United States - MSUNE_N_03 University of Wisconsin, Madison 3300045866 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.72689 -110.70882 101723345 229117 33 16 73 13 0.0 Metagenome 3300011199 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 3 - S13.3.20.a - transect 3, age 3 years, surface depth). University of Bristol 3300011199 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes EAEloeFadrosh@lbl.gov; maisie.nash@bristol.ac.uk; ama@envs.au.dk Emiley Eloe-Fadrosh; Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 79.11222222 12.25833333 7 17783002 40491 32 2 73 1 0.0 Metagenome 3300013620 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100787 University of Pennsylvania 3300013620 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 6931433 12841 9 4 21 9 SRX756067 0.0 Metagenome 3300029991 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - SMB2 Michigan State University 3300029991 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 34.536667 122.141667 17299321 41747 133 2 395 48 0.0 Metagenome 3300021281 *Microbiome Permanent Draft Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States - Hobet_Cave_1 DOE Joint Genome Institute (JGI) 3300021281 Metagenome Analysis spades v. 3.11.1-check Yes Yes zachary.freedman@mail.wvu.edu Zachary Freedman No Environmental Terrestrial Surface mine Soil Reclaimed soil 38.083 -81.98 8287382 27737 53 17 86 17 SRX4030463 Unrestricted 4.87 Metagenome 3300029607 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P025V1 Beijing Genomics Institute (BGI) 3300029607 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 183441145 225985 125 0 173 0 0.0 Metagenome 3300029488 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001827-39 Beijing Genomics Institute (BGI) 3300029488 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 183496520 228923 155 0 232 0 0.0 Metagenome 3300022319 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1BM1 JM97 AGRF 3300022319 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 43178283 75355 30 1 44 4 0.0 Metagenome 3300046335 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_111 DOE Joint Genome Institute (JGI) 3300046335 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9236 -106.9499 138582608 340392 415 146 818 202 Restricted 0.0 Metagenome 3300042443 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D307_2 DOE Joint Genome Institute (JGI) 3300042443 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 203150795 297094 189 6 236 10 Unrestricted 75.65 Metagenome 3300049808 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_5_D DOE Joint Genome Institute (JGI) 3300049808 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 182001655 222231 115 1 135 1 Restricted 0.0 Metagenome 7000000151 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human saliva microbial communities from NIH, USA - visit 1, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000151 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human 39.0042816 -77.1012173 3054172 7865 0 0 0 0 0.0 Metagenome 3300070927 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Florida, USA - DSNY_009-M-20140409-COMP-DNA1 3300070927 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 1113775 3695 15 3 29 8 0.0 Metagenome 3300052792 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_TH_006D DOE Joint Genome Institute (JGI) 3300052792 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0523 10.4536 422072536 1090312 361 25 742 42 Unrestricted 8.96 Metagenome 3300011513 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01313 Weill Cornell Medical College 3300011513 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.8 -73.91 23599020 31260 12 0 19 0 SRX823253 0.0 Metagenome 3300009024 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705 DOE Joint Genome Institute (JGI) 3300009024 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 605030984 1187026 652 99 991 171 SRX2753513 Unrestricted 6.83 Metagenome 3300003629 *Microbiome Permanent Draft Hypersaline viral and bacterial communities from Bras del Port, Santa Pola, Spain Hypersaline viral communities from Bras del Port, Santa Pola, Spain - Lo Valdivia P4 Lifesequencing S.L. 3300003629 Metagenome Analysis released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline samples 38.192206 -0.591865 18509764 37357 2 0 2 0 0.0 Metagenome 3300022558 *Microbiome Permanent Draft Subsurface microbial diversity of groundwater of Koyna-Warna region, Deccan traps, Panchgani, Maharashtra, India Groundwater seepage microbial community from Koyna-Warna region, Deccan traps, Panchgani, Maharashtra, India - PBW K99 Indian Institute of Technology, kharagpur 3300022558 Metagenome Analysis Spades v. 3.10 released by JGI data releasing policy No Yes sarpinaki@gmail.com; sarpinaki@yahoo.com Dr PINAKI SAR; Pinaki Sar No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater seepage 17.304415 73.793353 62196984 88082 46 3 73 3 0.0 Metagenome 3300030392 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_064 - TARA_R100000306 CEA Genoscope 3300030392 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -29.5046 37.9599 256964565 514234 58 0 76 0 0.0 Metagenome 3300045223 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_5_F DOE Joint Genome Institute (JGI) 3300045223 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 193062279 225250 126 1 133 2 Unrestricted 104.61 Metagenome 3300009363 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765013792 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300009363 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes NMikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 164456726 233945 154 0 191 0 0.0 Metagenome 3300024329 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 39D DOE Joint Genome Institute (JGI) 3300024329 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 323930072 639267 177 54 269 94 SRX4459963 Unrestricted 22.37 Metagenome 3300012266 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - JTO19cm metaG DOE Joint Genome Institute (JGI) 3300012266 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; wswingley@niu.edu Ramunas Stepanauskas; Wesley Swingley No Environmental Aquatic Creek Freshwater Unclassified Freshwater 41.6655 -87.5437 13-14 88170626 216053 179 12 330 22 SRX3296548 Unrestricted 0.0 Metagenome 3300051101 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Warrenville, Illinois, USA - 63_717_IL_DR_0cm_c3_T1_18O DOE Joint Genome Institute (JGI) 3300051101 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 41.84145 -88.2298 618904846 1084450 229 3 401 6 Restricted 14.46 Metagenome 3300029149 *Microbiome Permanent Draft Environmental microbial communities from various locations to study antibiotic resistance - The University of Hong Kong Marine sediment microbial communities from University of Hong Kong - Deep-ocean Sediment University of Hong Kong 3300029149 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Oceanic Marine Sediment Deep-ocean Sediment 6443113 17829 34 2 63 7 SRX371706 0.0 Metagenome 3300013924 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00756 Weill Cornell Medical College 3300013924 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.95 17886545 29178 17 0 28 0 SRX822722 0.0 Metagenome 3300020693 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 01OCT2007 hypolimnion DOE Joint Genome Institute (JGI) 3300020693 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 66856621 143142 74 7 105 10 Unrestricted 0.0 Metagenome 3300050239 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Butler, South Dakota, USA - 103_881_SD_DR_1m_c1_T1_18O DOE Joint Genome Institute (JGI) 3300050239 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 45.27223 -97.8369 1167392508 1787390 360 11 580 16 Restricted 13.96 Metagenome 3300007942 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 159814214 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007942 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 17435325 26703 17 0 20 5 SRX024555, SRX024556 0.0 Metagenome 3300001326 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A28-35cm)- 6 month illumina University of Tennessee 3300001326 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 26207347 107712 113 3 285 5 0.0 Metagenome 3300013204 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100573 University of Pennsylvania 3300013204 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 13433912 33744 32 12 59 27 SRX756181 0.0 Metagenome 3300002533 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C43A7_80 DOE Joint Genome Institute (JGI) 3300002533 Metagenome Analysis Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 32367701 82604 125 15 208 26 SRX1990952 Unrestricted 0.0 Metagenome 3300031698 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-70 DOE Joint Genome Institute (JGI) 3300031698 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh sediment 42.722 -70.847 794501715 1466224 661 2 1023 7 SRX6458715 Unrestricted 12.55 Metagenome 3300026891 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgLPB (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026891 Metagenome Analysis spades v. 3.11.1 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 52137121 161336 127 5 244 7 SRX2521130 Unrestricted 0.0 Metagenome 3300007062 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 159591683 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007062 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 48658485 56687 29 0 41 0 0.0 Metagenome 3300069248 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Konza Prairie Bio Station, Kansas, USA - KONZ_046-M-20210720-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069248 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Grasslands Soil Unclassified Terrestrial soil 39.103068 -96.563925 2555158047 5757288 1193 33 2275 58 0.0 Metagenome 3300045675 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-492 Genome Quebec 3300045675 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 54.064509 -123.007832 1152325840 2798932 458 114 787 239 0.0 Metagenome 3300013343 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway plastic -P01223 Weill Cornell Medical College 3300013343 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Plastic surface city subway plastic 40.87 -73.88 19317438 34294 15 0 25 0 SRX823178 0.0 Metagenome 3300012823 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched chicken feces microbial communities from UW Madison campus, WI, USA - DID2898_E24 MG DOE Joint Genome Institute (JGI) 3300012823 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Birds Large intestine Digestive system Fecal feces 43.073 -89.4011 78306800 112814 113 0 189 1 SRX3564711 Unrestricted 0.0 Metagenome 2199352032 *Microbiome Permanent Draft Speleothem and rock wall surfaces microbial communities from Kartchner Caverns, Benson, Arizona, USA Cave microbial community (Speleothem A) Arizona Genomics Institute 2199352032 Metagenome Analysis Newbler released per JGI data release policy No Yes moo@email.arizona.edu Marian Ortiz No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Speleothem and rock wall surfaces 31.837801 -110.350292 168969099 488539 134 0 262 0 0.0 Metagenome 3300008077 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 763860675 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008077 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 204932377 286553 188 0 336 0 0.0 Metagenome 2004247006 *Microbiome Permanent Draft Hypersaline mat microbial communities from Guerrero Negro, Baja California Sur, Mexico Hypersaline mat microbial communities from Guerrero Negro, Mexico - 6-10 mm depth into microbial mat DOE Joint Genome Institute (JGI) 2004247006 Metagenome Analysis No Yes nrpace@colorado.edu Pace, Norman Yes 18523433 Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Microbial mats Hypersaline mat 27.68908 -113.917 6-9 9864533 16016 3 0 3 0 0.0 Metagenome 3300041928 *Microbiome Permanent Draft Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada Deep seawater microbial communities from Juan de Fuca Ridge, Canada - bkMV Dalhousie University 3300041928 Metagenome Analysis Megahit v. 1.2.8 released by JGI data releasing policy No Yes smurdock@uvic.ca Sheryl Murdock No Environmental Aquatic Oceanic Marine Unclassified Deep seawater 48.4303 -128.6821 279905223 575142 243 35 401 86 0.0 Metagenome 3300000581 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 24JUN2008 hypolimnion DOE Joint Genome Institute (JGI) 3300000581 Metagenome Analysis released based on JGI ITS No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300022765 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S11 Version 2 University of New South Wales 3300022765 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 60056464 99177 7 8 15 19 0.0 Metagenome 3300032325 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains Ecozone, Canada - Lake 08-197 Genome Quebec 3300032325 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.259513 -80.968908 522026947 1024898 314 101 516 180 0.0 Metagenome 3300011753 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00919 Weill Cornell Medical College 3300011753 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.75 -73.85 24661628 39637 15 0 28 0 SRX822882 0.0 Metagenome 2124908007 *Microbiome Draft Soil microbial communities from FACE and OTC sites in USA Soil microbial communities from sample at FACE Site Metagenome WIR_ElevOz2 DOE Joint Genome Institute (JGI) 2124908007 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes kuske@lanl.gov Cheryl Kuske No Environmental Terrestrial Unclassified Soil Unclassified Soil 45.68 -89.63 386839648 1040212 611 70 919 0 Unrestricted 0.0 Metagenome 3300040475 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 057B_R1 University of Maryland 3300040475 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 61.00980556 25.67746389 4050342 9848 13 4 11 5 0.0 Metagenome 3300034787 *Microbiome Permanent Draft Sediment microbiome project Sediment microbial communities from wetland pond in Xixi Nat. Park in Hangzhou, Zhejiang, China - 3 Beijing Genomics Institute (BGI) 3300034787 Metagenome Analysis megahit v. 1.1.3 released by JGI data releasing policy No Yes 17826834892@163.com wang binhao No Environmental Aquatic Pond Freshwater Sediment sediment 30.268 120.04 103349435 140442 35 1 68 0 0.0 Metagenome 3300011941 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00438 Weill Cornell Medical College 3300011941 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -73.82 23382873 37806 11 0 13 0 SRX822407 0.0 Metagenome 7000000076 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 823052294 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000076 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 13729251 27967 0 0 0 0 0.0 Metagenome 3300006306 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0500m University of Hawaii 3300006306 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Aphotic zone Marine 22.75 -158.0 310237780 786894 442 12 701 28 0.0 Metagenome 3300047652 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BT04-01redo_D0 (version 2) DOE Joint Genome Institute (JGI) 3300047652 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3555 19.0492 318969798 552078 163 18 274 21 Restricted 0.0 Metagenome 3300029881 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37349 Beijing Genomics Institute (BGI) 3300029881 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 259887108 337061 194 1 287 0 0.0 Metagenome 3300025274 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025274 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 39.47 11.53 230315946 506009 43 0 70 1 SRX2753839 Unrestricted 0.0 Metagenome 3300025493 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR11Jul_8A2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025493 Metagenome Analysis spades v. 3.11.1 Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 61753590 99679 54 0 71 1 SRX3318648 Unrestricted 0.0 Metagenome 3300020146 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_10-13C DOE Joint Genome Institute (JGI) 3300020146 Metagenome Analysis spades v. 3.10.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.305 -116.2547 317105193 650436 317 8 510 19 SRX3936756 Unrestricted 18.4 Metagenome 3300056773 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FL_02 DOE Joint Genome Institute (JGI) 3300056773 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.407926 -82.180036 96709755 152757 4 4 7 7 Restricted 0.0 Metagenome 3300044793 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - FA_A100 DOE Joint Genome Institute (JGI) 3300044793 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.1337 -62.8885 1122398390 2909739 393 10 794 13 Unrestricted 9.36 Metagenome 3300069443 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_001-M-20160720-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069443 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 26044581 90190 51 4 104 9 0.0 Metagenome 3300007348 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763860675 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007348 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 117883956 178382 76 0 93 0 0.0 Metagenome 3300020334 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX555938-ERR599091) CEA Genoscope 3300020334 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -8.895 -142.6228 288713401 724154 207 12 381 13 0.0 Metagenome 3300003131 *Microbiome Permanent Draft Encarsia pergandiella symbiont microbial communities from Weslaco, Texas Encarsia pergandiella symbiont microbial communities from Weslaco, Texas DOE Joint Genome Institute (JGI) 3300003131 Metagenome Analysis released based on JGI ITS No Yes horn@microbial-ecology.net Horn No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Encarsia pergandiella symbiont 26.166223 -97.992954 18423736 32998 2 4 4 4 Unrestricted 0.0 Metagenome 2222084008 *Microbiome Permanent Draft Traditional grape vine soil microbial communities from Colmar, France ColmarContigsNoOGM CEA Genoscope 2222084008 Metagenome Analysis Velvet released per JGI data release policy No Yes sandrine.demaneche@ec-lyon.fr Sandrine DEMANECHE No Environmental Terrestrial Unclassified Soil Agricultural land Traditional grape vine soil 48.081 7.355 137411117 543629 210 0 517 0 0.0 Metagenome 3300011237 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 2 - S13.2.20.a - transect 2, age 3 years, surface depth) University of Bristol 3300011237 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes EAEloeFadrosh@lbl.gov; maisie.nash@bristol.ac.uk; ama@envs.au.dk Emiley Eloe-Fadrosh; Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 79.112223 12.175 7.66 32695412 82985 104 9 155 14 0.0 Metagenome 3300004691 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul07 (version 2) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300004691 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 117186237 375287 122 93 245 350 SRX2565284 Unrestricted 0.0 Metagenome 3300025298 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025298 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 393928758 569518 156 2 179 4 SRX2770671 Unrestricted 0.0 Metagenome 3300055379 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.19C.10 SIP fraction DOE Joint Genome Institute (JGI) 3300055379 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 449769058 782913 156 15 252 32 Unrestricted 19.42 Metagenome 3300041403 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Estuary water microbial communities from Narragansett Bay, Rhode Island, USA - E2_AmbCPA DOE Joint Genome Institute (JGI) 3300041403 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.9078 -71.5683 640822027 950108 227 50 264 83 SRX14798517 Unrestricted 27.24 Metagenome 3300058577 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Biomass microbial communities from acid-phase anaerobic digester in WWTP, Madison, WI, USA - 20201123_SampleC DOE Joint Genome Institute (JGI) 3300058577 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Sludge Anaerobic digester Unclassified Biomass 43.0333 -89.3563 19771476 18985 22 0 24 0 Unrestricted 7.65 Metagenome 3300045821 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - G2-R2-B DOE Joint Genome Institute (JGI) 3300045821 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3569 19.0504 380330691 828765 283 34 420 79 Unrestricted 7.12 Metagenome 3300047317 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere DOE Joint Genome Institute (JGI) 3300047317 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1214 -123.2704 1281045774 2011119 340 76 517 94 Unrestricted 15.63 Metagenome 3300014144 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, USA - P5_32mM MetaG DOE Joint Genome Institute (JGI) 3300014144 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 86525446 93827 9 15 10 28 SRX3780041 Unrestricted 98.54 Metagenome 2065487004 *Microbiome Permanent Draft Human fecal microbial communities from Baylor College of Medicine, Texas, USA, mock community Human fecal microbial communities from Baylor College of Medicine, Texas, USA, mock community - Mock Even Illumina Velvet Baylor College of Medicine 2065487004 Metagenome Analysis released per JGI data release policy No Yes xqin@bcm.tmc.edu Xiang Qin No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 29.7 -95.38 43556919 51212 87 0 146 0 0.0 Metagenome 3300004227 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 116_HOW13 DOE Joint Genome Institute (JGI) 3300004227 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 80813334 174373 39 0 86 0 SRX2721193 Unrestricted 0.0 Metagenome 3300019751 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States - IW18Oct16_MG DOE Joint Genome Institute (JGI) 3300019751 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Unclassified freshwater 38.7906 -75.1638 157031447 382957 236 59 413 117 SRX3983638 Unrestricted 4.44 Metagenome 3300028012 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE4 DOE Joint Genome Institute (JGI) 3300028012 Metagenome Analysis spades v. 3.11.1 Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 59.9992 10.7901 27762496 80066 134 48 198 90 SRX5271609 Unrestricted 9.98 Metagenome 3300003963 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Enrichment cultures from Harmful Algal Blooms in Lake Erie, HABS-00-39868 University of Michigan 3300003963 Metagenome Analysis IDBA-UD v1.1.1 released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lentic Freshwater Unclassified Freshwater -77.611214 163.119356 36504763 44313 35 0 42 0 0.0 Metagenome 3300007749 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Dobu ""bubble"", co11ds 200bp-25Jan2016" University of New South Wales 3300007749 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Coelocarteria singaporensis (marine sponge) -9.73665 150.867667 123158199 228589 79 5 116 6 0.0 Metagenome 3300009527 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Groundwater microbial communities from Cold Creek, Nevada to study Microbial Dark Matter (Phase II) - Lower Cold Creek DOE Joint Genome Institute (JGI) 3300009527 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes rstepanauskas@bigelow.org; duane.moser@dri.edu Ramunas Stepanauskas; Duane Moser No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 36.42 -115.74 639386082 1370328 789 82 1359 133 SRX2948616 Unrestricted 0.0 Metagenome 2199352005 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion v1 DOE Joint Genome Institute (JGI) 2199352005 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 63922670 157669 93 0 180 0 Unrestricted 0.0 Metagenome 2037747000 *Microbiome Permanent Draft Coalbed water microbial communities from New Mexico, USA Coalbed microbial communities from New Mexico, USA - 341 Virginia Polytechnic Institute and State University 2037747000 Metagenome Analysis released per JGI data release policy No Yes biswarup@vt.edu Biswarup Mukhopadhyay No Environmental Aquatic Groundwater Freshwater Coalbed water Coalbed water 36.728056 -108.220833 65570483 166642 86 0 170 0 0.0 Metagenome 3300038981 *Microbiome Permanent Draft Microbial communities from Yellowstone National Park hot springs 2018 Hot spring sediment microbial communities from Mouthful Geyser OF1, Yellowstone National Park, USA - 180603R University of Minnesota Genomics Center 3300038981 Metagenome Analysis SPAdes v. 3.11.0 released by JGI data releasing policy Yes Yes trinityh@umn.edu Trinity Hamilton No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.53251713 -110.79776865 101090071 215532 43 0 89 0 0.0 Metagenome 3300037504 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site2_nosalt_MIX_3 DOE Joint Genome Institute (JGI) 3300037504 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Tidal flats microbial mat 20.7452 58.6625 1708057809 2495591 613 4 942 3 SRX9169792 Unrestricted 21.39 Metagenome 3300027595 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Colum_RepC_8h DOE Joint Genome Institute (JGI) 3300027595 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 142462161 279018 109 11 155 12 SRX5245239 Unrestricted 20.16 Metagenome 3300038498 *Microbiome Permanent Draft Freshwater sediment microbial communities from Alaska Lake sediment microbial communtites from St. Paul Island, Alaska - PH150_511 University of California, Santa Cruz 3300038498 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Sediment Lake sediment 57.18 -170.25 2150434 6688 0 0 0 0 0.0 Metagenome 3300040628 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_004-M-20140715-COMP-DNA1 Argonne National Laboratory 3300040628 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 1228917 4223 16 2 21 0 ERX2133944 0.0 Metagenome 3300017740 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 41 SPOT_SRF_2013-03-13 DOE Joint Genome Institute (JGI) 3300017740 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 317141173 742460 115 91 173 173 SRX7207518, SRX7207519 Unrestricted 0.0 Metagenome 3300026474 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - P.F.S.T0 DOE Joint Genome Institute (JGI) 3300026474 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 181173262 406937 232 0 446 2 SRX4550134, SRX7705823 Unrestricted 0.0 Metagenome 3300056639 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.19C.15 SIP fraction DOE Joint Genome Institute (JGI) 3300056639 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 123199484 234705 53 23 96 31 Unrestricted 10.04 Metagenome 3300026293 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant NP 2012 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026293 Metagenome Analysis spades v. 3.11.1 Yes Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic microbial mat 44.534 -110.7978 408008933 661247 298 3 415 1 SRX2554556 Unrestricted 0.0 Metagenome 3300034042 *Microbiome Permanent Draft Deception Metagenome Glacier sediment microbial communities near Whalers Bay, Deception Island, Antarctica - WBC2 The Brazilian National Council for Scientific and Technological Development (CNPq) 3300034042 Metagenome Analysis IDBA-ud v. 1.1.1 released per Amanda Bendia -- GOLD-1013 No Yes amandagbendia@gmail.com Amanda Bendia No Environmental Aquatic Ice Freshwater Glacier glacier sediment -63.18 -60.67 49655554 70461 21 0 49 1 0.0 Metagenome 3300035681 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Sep2014-rr0126 DOE Joint Genome Institute (JGI) 3300035681 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1358745833 2596078 768 218 1160 331 SRX8203131 Unrestricted 9.92 Metagenome 3300000194 *Microbiome Permanent Draft Delisea pulchra's surface microbial communities from Botany Bay, Sydney, Australia Delisea pulchra's surface microbial communities from Botany Bay, Sydney, Australia - BBAY56_SOAP_k25_Abyss_k41_GAA J. Craig Venter Institute 3300000194 Metagenome Analysis Assembled with SOAPdenovo and Abyss separately and then joined with GAA released per JGI data release policy No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Red algae Unclassified Delisea pulchra's surface -33.991017 151.232433 485696515 969734 0 0 0 0 0.0 Metagenome 3300012221 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100202 University of Pennsylvania 3300012221 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 11050309 22759 8 0 14 0 SRX756697 0.0 Metagenome 3300060377 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210601_05_09 DOE Joint Genome Institute (JGI) 3300060377 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 861589692 1283590 309 141 433 209 Unrestricted 29.36 Metagenome 3300045428 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-495 Genome Quebec 3300045428 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 52.118825 -122.075003 672198838 1480851 280 25 476 51 0.0 Metagenome 3300043179 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from California, United States - Upper Travertine Spring (UTS_S1) (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043179 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Warm (34-42C) Thermal springs Unclassified Desert spring 36.4428 -116.8278 7.4 930738698 1422858 363 2 620 2 SRX9167910 Unrestricted 43.4 Metagenome 3300070683 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_004-O-20190830-COMP-DNA1 3300070683 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 22399215 70437 61 5 88 15 0.0 Metagenome 3300054600 *Microbiome Permanent Draft Soil microbial communities from pasture in Hopland Research and Extension Center, CA, USA Soil viral communities from pasture in Hopland Research and Extension Center, CA, USA - T2-H218O+P-C library kit 1SPlus DOE Joint Genome Institute (JGI) 3300054600 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes trubl1@llnl.gov Gareth Trubl No Environmental Terrestrial Pasture Soil Unclassified Soil 39.00177 -123.06967 147341850 379198 119 0 226 4 Unrestricted 140.0 Metagenome 3300001361 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A30-PF)- 6 month illumina University of Tennessee 3300001361 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 189621692 716942 235 5 381 11 0.0 Metagenome 3300027376 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027376 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 187946141 470216 196 39 385 62 SRX3311926 Unrestricted 0.0 Metagenome 3300003806 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH16Oct07 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003806 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 46165242 114691 33 8 74 25 SRX2565418 Unrestricted 0.0 Metagenome 3300019837 *Microbiome Permanent Draft Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil - Edson_C4 Center for Advanced Technologies in Genomics, Sao Paulo University 3300019837 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 43910353 86040 75 1 129 1 0.0 Metagenome 3300012901 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1 DOE Joint Genome Institute (JGI) 3300012901 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 675886314 1729927 589 32 1188 62 SRX3297419 Unrestricted 3.99 Metagenome 3300042248 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D316_1 DOE Joint Genome Institute (JGI) 3300042248 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 217125441 314357 174 7 245 10 Unrestricted 73.88 Metagenome 3300050197 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D10_RHK1_3_to_SEK1 DOE Joint Genome Institute (JGI) 3300050197 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.244 311426053 411809 157 88 278 128 Unrestricted 18.36 Metagenome 3300048793 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-P1(1) 30-34 DOE Joint Genome Institute (JGI) 3300048793 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.355 19.0438 669038228 1041141 198 1 330 5 Restricted 15.12 Metagenome 3300028583 *Microbiome Permanent Draft Deep ocean water column microbial communities from Yap Trench, western Pacific Ocean Seawater microbial communities from Yap Trench, western Pacific Ocean - 37I-Yap-CTD02-5000m re-assembly Third Institute of Oceanography, State Oceanic Administration 3300028583 Metagenome Analysis idba v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Abyssopelagic Marine Unclassified seawater 9.87 138.5 1129478887 1890254 205 8 326 19 0.0 Metagenome 3300000688 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 33 DOE Joint Genome Institute (JGI) 3300000688 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 6186233 20125 56 0 64 0 SRX4340709 Unrestricted 0.0 Metagenome 3300000407 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P1 v3 (version 3) DOE Joint Genome Institute (JGI) 3300000407 Metagenome Analysis released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300048005 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_190123.NP1 DOE Joint Genome Institute (JGI) 3300048005 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 579899392 1273698 462 34 805 69 Unrestricted 10.04 Metagenome 3300026769 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A1w-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300026769 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 15715682 50736 93 1 148 2 SRX1991146 Unrestricted 0.0 Metagenome 3300054098 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_6_100 re-annotation DOE Joint Genome Institute (JGI) 3300054098 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 332546245 586377 154 0 245 0 SRX3002041 0.0 Metagenome 3300029797 *Microbiome Permanent Draft Sediment microbial communities from Yellow Sea, Weihai, China Sediment microbial communities from Yellow Sea, Weihai, China - HGD.2 Shandong University 3300029797 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Coastal Marine Unclassified Sediment 37.31 122.0 333526101 587425 413 4 636 7 0.0 Metagenome 3300049587 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 DOE Joint Genome Institute (JGI) 3300049587 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.407926 -82.180036 1645593569 2804129 637 15 1147 25 Unrestricted 14.41 Metagenome 2228664011 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Coal Bed microbial communities from Alberta -Trident_1560D McGill University 2228664011 Metagenome Analysis No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Biotransformation Unclassified Microbial solubilization of coal Unclassified Hydrocarbon resource environments 54.16 -114.71 58988867 162562 73 0 125 0 0.0 Metagenome 3300007725 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_H2O_MG DOE Joint Genome Institute (JGI) 3300007725 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Water 37.496 -122.1329 397585600 828821 614 97 1002 149 SRX2523667 Unrestricted 0.0 Metagenome 3300070354 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dakota Coteau Field Site, North Dakota, USA - DCFS_063-M-20190724-COMP-DNA1 3300070354 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 118293443 279746 69 3 167 3 0.0 Metagenome 3300070721 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Alabama, USA - LENO_064-M-20180709-COMP-DNA1 3300070721 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 1379046 4708 33 1 42 2 0.0 Metagenome 3300042738 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - F_c8 Re-assembly Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042738 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1237 -89.1404 1006569660 895909 9 9 15 15 SRX5234776 0.0 Metagenome 3300040566 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_004-O-31-8-20131122-GEN-DNA1 Argonne National Laboratory 3300040566 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 2304443 6263 45 5 86 14 ERX2134011 0.0 Metagenome 3300025024 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from Cariaco Basin, Caribbean Sea - 28_WHOI_OMZ (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025024 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 10.847 -65.114 31098605 38757 20 5 19 4 SRX2929443 Unrestricted 0.0 Metagenome 7000000226 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763840445 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000226 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 109812736 194510 0 0 0 0 0.0 Metagenome 3300049569 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 DOE Joint Genome Institute (JGI) 3300049569 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.40849 -82.168434 1228057876 1989379 529 31 864 52 Unrestricted 16.45 Metagenome 3300032040 *Microbiome Permanent Draft Extreme environments viral communities from various locations Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - CBIW 1.2 DOE Joint Genome Institute (JGI) 3300032040 Metagenome Analysis spades v. 3.12.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Coastal Marine Unclassified cryopeg brine 71.2944 -156.7154 277280500 451821 99 3 159 4 SRX5801503 Unrestricted 180.49 Metagenome 3300003430 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD DOE Joint Genome Institute (JGI) 3300003430 Metagenome Analysis Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 324247128 763684 350 135 603 192 SRX2565077, SRX2565078, SRX2565079 Unrestricted 0.0 Metagenome 3300025363 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH11Jul08 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025363 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 91314169 196678 102 16 154 18 SRX2565400 Unrestricted 0.0 Metagenome 3300071105 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_047-M-20180618-COMP-DNA1 3300071105 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 12543964 39806 67 2 135 6 0.0 Metagenome 3300049355 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MDF1 DOE Joint Genome Institute (JGI) 3300049355 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 220636174 645806 343 9 647 9 Unrestricted 7.14 Metagenome 3300001874 *Microbiome Permanent Draft Desert and grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils - Sample6 3300001874 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Terrestrial Unclassified Soil Grasslands Desert and grassland soil 23.850674 69.734802 0 0 0 0 0 0 0.0 Metagenome 3300005991 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_10-June-14 DOE Joint Genome Institute (JGI) 3300005991 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 194459428 643015 429 110 851 220 SRX2838983 Unrestricted 0.0 Metagenome 3300008227 *Microbiome Permanent Draft Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico and Hudson Canyon, USA Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM15C Gulf of Mexico DOE Joint Genome Institute (JGI) 3300008227 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mcredmond@uncc.edu Molly C. Redmond Yes 28871146 Environmental Aquatic Cold seeps Marine Unclassified Methane seep mesocosm 27.37 -90.57 845437039 1822033 1304 6 2043 10 Unrestricted 0.0 Metagenome 3300005488 *Microbiome Finished Sediment methylotrophic communities from Lake Washington, Seattle, Washington, USA Sediment ecosystem from Lake Washington, Seattle, Washington, USA - Methane enrichment DOE Joint Genome Institute (JGI) 3300005488 Metagenome Analysis LUCY, PGA Assembler released based on JGI ITS Yes Yes milachis@u.washington.edu, milachis@u.washington.edu; lidstrom@uw.edu Lumila Chistoserdova, Ludmila Chistoserdova; Mary Lidstrom Yes 18711340 Environmental Aquatic Lentic Freshwater Sediment Sediment 47.63458 -122.26655 52125423 100360 18 1 49 0 Unrestricted 0.0 Metagenome 3300037856 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - Pt-4 DOE Joint Genome Institute (JGI) 3300037856 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 113640686 126005 38 4 43 3 SRX9140388 Unrestricted 145.32 Metagenome 3300005607 *Microbiome Permanent Draft Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 DOE Joint Genome Institute (JGI) 3300005607 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shadeash@msu.edu, shade.ashley@gmail.com Ashley Shade Yes 30397342 Environmental Terrestrial Unclassified Soil Unclassified Surface soil 40.7999 -76.3402 1133023360 2564986 955 26 1529 81 SRX2837997 Unrestricted 0.0 Metagenome 3300026787 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09K5-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026787 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 25809101 87208 108 7 197 13 SRX2576215 Unrestricted 0.0 Metagenome 3300002371 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 09NOV2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002371 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.098333 -89.405278 30506500 74938 90 4 150 9 SRX1989931 Unrestricted 0.0 Metagenome 3300013439 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100773 University of Pennsylvania 3300013439 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3978763 6703 15 4 14 4 SRX756079 0.0 Metagenome 3300034981 *Microbiome Permanent Draft Extreme environments viral communities from various locations Sediment microbial communities from Lake Vrana, Zadar, Croatia - 17 bact DOE Joint Genome Institute (JGI) 3300034981 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Lake Freshwater Sediment sediment 43.8596 15.6388 150870753 304605 104 5 182 1 SRX8199965 Unrestricted 54.41 Metagenome 3300026315 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0927_09_20cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026315 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 423585893 760504 243 17 447 17 SRX2521027 Unrestricted 0.0 Metagenome 3300006483 *Microbiome Permanent Draft Microbial communities from manure storage tank from Sherbrooke, QC, Canada Microbial communities from pig manure storage tank from Sherbrooke, QC, Canada, enriched culture C4 Agriculture and Agri-Food Canada 3300006483 Metagenome Analysis Trinity released per JGI data release policy No Yes jennifer.town@agr.gc.ca, Jennifer.town@agr.gc.ca Jennifer Town No Engineered Solid waste Unclassified Animal waste Unclassified Manure 45.4 -71.9 56506304 103674 72 4 136 6 0.0 Metagenome 3300038962 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample32 King Abdulaziz City for Science and Technology (KACST) 3300038962 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 23.36 37.3 43497161 114905 52 0 88 0 SRX1097600 0.0 Metagenome 3300011747 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00369 Weill Cornell Medical College 3300011747 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.73 -74.0 27544430 33838 14 0 17 0 SRX822340 0.0 Metagenome 7000000037 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2 of subject 764325968 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000037 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 449647 1252 0 0 0 0 SRX024130 0.0 Metagenome 3300042339 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME10Jun2013-rr0733 DOE Joint Genome Institute (JGI) 3300042339 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 701579800 957208 164 18 215 35 Unrestricted 16.56 Metagenome 3300013585 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100725 University of Pennsylvania 3300013585 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 2700451 7185 15 2 27 8 SRX756125 0.0 Metagenome 3300035662 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Aug2014-rr0085 DOE Joint Genome Institute (JGI) 3300035662 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1638149717 3164042 775 106 1202 189 SRX8202265 Unrestricted 10.39 Metagenome 3300028020 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Soil microbial communities from Maridalen valley, Oslo, Norway - NSE4 DOE Joint Genome Institute (JGI) 3300028020 Metagenome Analysis spades v. 3.11.1 Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 59.9992 10.7901 60707230 158560 94 9 191 18 SRX5271696 Unrestricted 7.4 Metagenome 3300043540 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNPCB020 DOE Joint Genome Institute (JGI) 3300043540 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes viola.krukenberg@montana.edu Viola Krukenberg No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.5675 -110.8074 755888534 1033434 390 45 547 58 Unrestricted 64.16 Metagenome 3300005149 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage D2F04 DOE Joint Genome Institute (JGI) 3300005149 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 45709998 61234 107 0 185 0 SRX3195128 Unrestricted 0.0 Metagenome 3300045185 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_4_D DOE Joint Genome Institute (JGI) 3300045185 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 164341452 202083 96 1 106 1 Unrestricted 105.36 Metagenome 3300044269 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T64 S DOE Joint Genome Institute (JGI) 3300044269 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7377 -64.3436 298236914 740187 39 3 49 1 Unrestricted 98.34 Metagenome 3300071059 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Puu Makaala Natural Area Reserve, Hawaii, USA - PUUM_015-O-20210106-COMP-DNA1 3300071059 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 250131 845 7 1 6 1 0.0 Metagenome 3300026368 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T75.r1 DOE Joint Genome Institute (JGI) 3300026368 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 121701487 293063 237 33 440 59 SRX4550063 Unrestricted 36.97 Metagenome 3300030462 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces viral communities from colorectal cancer patient in Houston, USA - MG100072 University of Michigan 3300030462 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 29.76 -95.37 1702241 2414 1 0 1 0 0.0 Metagenome 3300045073 *Microbiome Permanent Draft Rhizosphere soil microbial communities from Kattankulathur, India Rhizosphere soil microbial communities from Kattankulathur, India - anaerobic University of Madras 3300045073 Metagenome Analysis Velvet v. 3.3 released by Arunmozhi Bharathi Achudhan Yes Yes aa2554@srmist.edu.in Arunmozhi Bharathi Achudhan No Environmental Terrestrial Wetlands Soil Unclassified Rhizosphere soil 12.8229 80.0442 62964959 147775 147644 0 0 0 0.0 Metagenome 3300001382 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED DOE Joint Genome Institute (JGI) 3300001382 Metagenome Analysis Yes Yes binskeep@montana.edu, binskeep@montana.edu; jim.fredrickson@pnnl.gov William Inskeep, William P. Inskeep; Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.376 -110.69 76452366 153246 40 7 53 0 SRX2553549 Unrestricted 0.0 Metagenome 3300043296 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_4000m_C2_20cm25cm (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043296 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.1948 -122.0383 233189676 377840 157 0 232 0 SRX8383000 Unrestricted 67.57 Metagenome 3300005881 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_202 DOE Joint Genome Institute (JGI) 3300005881 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 200614148 744825 458 11 870 20 SRX2564883, SRX2581057 Unrestricted 0.0 Metagenome 3300057178 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2016-0030 DOE Joint Genome Institute (JGI) 3300057178 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.703 -83.254 447704665 943018 374 139 619 195 Unrestricted 20.65 Metagenome 3300009493 *Microbiome Permanent Draft Host-associated microbial communities of aphids from plants in several locations around USA Microbial communities of aphids from witch-hazel in New Haven, CT, USA - Hormaphis hamamelidis NM061510_01 seqcov University of Texas, Austin 3300009493 Metagenome Analysis CLC Genomics released per JGI data release policy Yes Yes becky.chong@utexas.edu Rebecca Chong No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified witch-hazel 41.257945 -72.989398 191563800 103895 1 1 1 1 0.0 Metagenome 3300013357 *Microbiome Permanent Draft Activated sludge bacterial and viral communities from EBPR bioreactors in Australia Activated sludge bacterial and viral communities from EBPR bioreactors in Queensland, Australia - SBR4-V91409 California Institute of Technology 3300013357 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Activated sludge -27.49999 153.01209 9330549 24916 10 0 17 1 SRX1077122 0.0 Metagenome 3300030004 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_1 DOE Joint Genome Institute (JGI) 3300030004 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 747379628 1430091 410 135 583 192 SRX5355729 Unrestricted 11.47 Metagenome 3300020703 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 16OCT2007 hypolimnion DOE Joint Genome Institute (JGI) 3300020703 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 76999047 177042 93 5 163 3 Unrestricted 0.0 Metagenome 3300026962 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 E3 (4) (SPAdes) DOE Joint Genome Institute (JGI) 3300026962 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 67978013 98771 88 0 94 0 SRX3311544 Unrestricted 0.0 Metagenome 3300030507 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_2 DOE Joint Genome Institute (JGI) 3300030507 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 960725184 1990527 521 85 757 144 SRX5799203 Unrestricted 10.95 Metagenome 3300017492 *Microbiome Permanent Draft Fecal microbial communities from free-living howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from free-living howler monkeys from Sao Paulo Zoo, Brazil - Ind. 3, S5 Center for Advanced Technologies in Genomics, Sao Paulo University 3300017492 Metagenome Analysis SPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 62867745 109583 99 3 140 3 0.0 Metagenome 3300038315 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_037 - TARA_R100000049 CEA Genoscope 3300038315 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 20.8457 63.5851 164873549 301172 42 1 51 2 0.0 Metagenome 7000000261 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764508039 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000261 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 93895277 173751 0 0 0 0 0.0 Metagenome 3300035056 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - C5-7 Autonomous University of Barcelona 3300035056 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 30702360 124745 267 0 522 0 0.0 Metagenome 3300071132 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_001-M-20190716-COMP-DNA1 3300071132 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 28244835 78615 63 5 116 8 0.0 Metagenome 3300024270 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet fungal communities from Santa Barbara, California, USA - pellet 1 Spades (v3) (version 3) DOE Joint Genome Institute (JGI) 3300024270 Metagenome Analysis SPAdes v. 3.11.1 No Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4204 -119.6671 4793886138 8972355 5069 26 6712 41 SRX3963493 Unrestricted 0.0 Metagenome 3300033829 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 P2 1-5 DOE Joint Genome Institute (JGI) 3300033829 Metagenome Analysis spades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0472 367847030 855680 197 28 376 45 SRX8138487, SRX8138486 Unrestricted 0.0 Metagenome 3300031184 *Microbiome Permanent Draft Soil and ectomycorrhiza microbial communities from Populus trichocarpa stands in riparian zones in the Pacific Northwest, United States Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S DOE Joint Genome Institute (JGI) 3300031184 Metagenome Analysis spades v. 3.12.0 Yes Yes kpeay@stanford.edu Kabir Peay No Environmental Terrestrial Riparian zone Soil Trees stand soil 45.5468 -122.376 1058752755 3091676 900 35 1588 58 SRX5650515 Unrestricted 7.78 Metagenome 3300027824 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027824 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 51.62 -128.09 1134143544 2379406 433 23 843 39 SRX2575214 Unrestricted 0.0 Metagenome 3300056885 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M2P_40_42 DOE Joint Genome Institute (JGI) 3300056885 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0099406 -81.5672344 1789573983 2715926 767 2 1263 0 Unrestricted 15.14 Metagenome 7000000450 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 765094712 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000450 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 46798 54 0 0 0 0 SRX024045 0.0 Metagenome 3300026042 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqB_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026042 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.209766 -122.033424 38900910 115175 158 2 296 0 SRX7186985 Unrestricted 0.0 Metagenome 3300027459 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE17-A (SPAdes) DOE Joint Genome Institute (JGI) 3300027459 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.32 41802276 113532 117 9 198 19 SRX1991442 Unrestricted 0.0 Metagenome 3300006288 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 1, subject 16040087 replicate 1 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300006288 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 22201078 31960 13 2 14 6 SRX024632, SRX024631 0.0 Metagenome 3300059746 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1553A-02 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059746 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.1867 -123.8835 158481571 326924 128 11 233 22 SRX2753729 Unrestricted 0.0 Metagenome 3300029125 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012083-87 Beijing Genomics Institute (BGI) 3300029125 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 118923890 152033 107 0 194 0 0.0 Metagenome 3300038368 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Natural salt marsh sediment microbial communities from Mersea Island, United Kingdom - S MINM 2A University of York 3300038368 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Natural salt marsh sediment 51.797167 0.920967 31378164 86248 67 0 131 0 0.0 Metagenome 3300023250 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 10-14 DOE Joint Genome Institute (JGI) 3300023250 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0471 156683490 399888 111 4 185 11 SRX4415329, SRX8128001 Unrestricted 0.0 Metagenome 3300069457 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_001-M-20170612-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069457 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 61950945 170320 87 5 164 8 0.0 Metagenome 3300021262 *Microbiome Permanent Draft Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States - Hobet_Shaw_1 DOE Joint Genome Institute (JGI) 3300021262 Metagenome Analysis spades v. 3.11.1-check Yes Yes zachary.freedman@mail.wvu.edu Zachary Freedman No Environmental Terrestrial Surface mine Soil Reclaimed soil 38.083 -81.98 10515613 30291 57 16 109 32 SRX4033563 Unrestricted 5.29 Metagenome 3300048032 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_200408.NP1 DOE Joint Genome Institute (JGI) 3300048032 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 686965916 1443475 386 53 616 99 Unrestricted 16.55 Metagenome 7000000534 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763496533 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000534 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 114224667 226406 0 0 0 0 0.0 Metagenome 3300013612 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway plastic -P00840 Weill Cornell Medical College 3300013612 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Plastic surface city subway plastic 40.76 -73.97 9447683 10857 7 0 10 0 SRX822806 0.0 Metagenome 3300057194 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2021-2013 DOE Joint Genome Institute (JGI) 3300057194 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.82726 -83.19041 331418988 733410 312 224 598 325 Unrestricted 15.48 Metagenome 3300012071 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Georgia, USA - TSGA067 MetaG DOE Joint Genome Institute (JGI) 3300012071 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 33.0108 -81.8997 147479975 269001 49 84 101 158 SRX3539709 Unrestricted 0.0 Metagenome 3300009298 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T10 (1) BES, Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2) Shell Corporation 3300009298 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com; tianakorin@googlemail.com Ian Head, Ian Head; Nicolas Tsesmetzis; Tetyana Korin No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 119336393 414218 176 0 298 0 0.0 Metagenome 3300041019 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - T5D1 IDBA-UD 60x Baseclear 3300041019 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 60219552 100794 71 3 119 5 0.0 Metagenome 3300040521 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_004-M-20160721-COMP-DNA1 Battelle Memorial Institute 3300040521 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 2761043 8244 12 3 25 1 0.0 Metagenome 3300001988 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP4 Joseph's Coat Springs v3 (version 3) DOE Joint Genome Institute (JGI) 3300001988 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23720654 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.733519 -110.333 6.1 14539159 21625 11 0 9 0 Unrestricted 0.0 Metagenome 3300070766 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_003-O-20180717-COMP-DNA1 3300070766 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 7797444 25671 38 7 68 11 0.0 Metagenome 3300001491 *Microbiome Permanent Draft Human axilla skin microbial communities from the University of Liverpool, UK Human axilla skin microbial communities from the University of Liverpool, UK - AX01 3300001491 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Host-associated Mammals: Human Skin Integumentary system Axilla/Armpit Human axilla skin 53.3484 -3.009 2915378 4493 4 5 5 8 0.0 Metagenome 3300019876 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - U3a2 DOE Joint Genome Institute (JGI) 3300019876 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9205 -106.9513 134394918 315091 227 10 511 21 SRX3944417, SRX3944418 Unrestricted 0.0 Metagenome 3300044975 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - AT5-8-2-19 DOE Joint Genome Institute (JGI) 3300044975 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.3133 -120.8097 428231816 1130617 452 17 788 25 Restricted 6.71 Metagenome 3300038769 *Microbiome Permanent Draft Marine hypoxic microbial communities from the Gulf of Mexico, USA Marine hypoxic microbial communities from the Gulf of Mexico, USA - 13m_Station6_GOM_Metagenome Georgia Institute of Technology 3300038769 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 10000090 21573 32 1 48 1 SRX1012844 0.0 Metagenome 3300054074 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10 re-annotation DOE Joint Genome Institute (JGI) 3300054074 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 955315753 1879672 430 21 699 46 SRX3960221 0.0 Metagenome 3300046094 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_38 DOE Joint Genome Institute (JGI) 3300046094 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9223 -106.9493 168438917 554749 731 11 1473 20 Unrestricted 0.0 Metagenome 3300043667 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 399-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043667 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9891 -107.0632 1006285148 2334137 511 10 896 27 Unrestricted 7.39 Metagenome 3300037285 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Camp Lake #17 DOE Joint Genome Institute (JGI) 3300037285 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.544 78.0833 374836444 684003 195 78 284 150 SRX9173324 Unrestricted 30.41 Metagenome 3300055456 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.17C.15 SIP fraction DOE Joint Genome Institute (JGI) 3300055456 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 459735667 686765 111 28 172 47 Unrestricted 21.86 Metagenome 3300025527 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025527 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 250100586 555721 149 19 248 37 SRX1987639 Unrestricted 0.0 Metagenome 3300060336 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Towuti Lake, South Sulawesi, Indonesia - Towuti_175m_2015 DOE Joint Genome Institute (JGI) 3300060336 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.7 121.4 813335092 1554069 531 9 850 10 Restricted 11.85 Metagenome 3300042030 *Microbiome Permanent Draft Mollusc gills microbial communities from various hydrothermal vent in Atlantic Ocean Mollusc gills microbial communities from Lilliput hydrothermal vent, Atlantic Ocean - BspSym_Li_1_10-2 Max Planck Institute for Marine Microbiology 3300042030 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills -9.5481672 -13.2088327 413360082 455239 3 8 8 8 ERX3367180 0.0 Metagenome 3300007081 *Microbiome Permanent Draft Freshwater lake microbial communities from Singapore - a non-axenic Synechococcus culture Freshwater lake microbial communities from Singapore - a non-axenic Synechococcus culture Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300007081 Metagenome Analysis CLC Genomics Workbench 8 released per JGI data release policy Yes Yes boonfei@ualberta.ca BOONFEI TAN No Environmental Aquatic Lake Freshwater Unclassified freshwater lake 1.3991438 103.77518 1744768401 7354361 4064 2084 7557 3767 0.0 Metagenome 3300039119 *Microbiome Permanent Draft Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA - pen4 University of Minnesota 3300039119 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic River Freshwater Unclassified Freshwater 44.917867 -93.128967 4078119 5922 3 0 3 0 0.0 Metagenome 3300035171 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 DOE Joint Genome Institute (JGI) 3300035171 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1125 -122.987 1454299452 3571992 1014 88 1696 130 SRX8289480 Unrestricted 7.03 Metagenome 3300027337 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepA_8d DOE Joint Genome Institute (JGI) 3300027337 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 174170537 313032 137 17 221 28 SRX5245193 Unrestricted 13.86 Metagenome 3300046770 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mississippi River, Louisiana, USA - NASQAN2011_239 DOE Joint Genome Institute (JGI) 3300046770 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 30.4456 -91.1915 12112460 36986 49 8 80 7 Unrestricted 0.0 Metagenome 3300061140 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IF2SW PMA-treated Jet Propulsion Laboratory, California Institute of Technology 3300061140 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 10412822 16159 9 2 17 6 SRX2249368, SRX2249369, SRX3808525, SRX3808537 0.0 Metagenome 3300043689 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - Rondonia_Pasture_2_A0m DOE Joint Genome Institute (JGI) 3300043689 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.17 -62.833 664648014 1722347 447 3 753 4 Unrestricted 7.53 Metagenome 3300005283 *Microbiome Draft Nasutitermes corniger hindgut microbial communities from the University of Florida, USA Nasutitermes corniger P1 gut segment microbial communitites from University of Florida, USA - Alkaline Insect Gut Metagenome: eDNA_1 DOE Joint Genome Institute (JGI) 3300005283 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes phugenholtz@lbl.gov Phil Hugenholtz No Host-associated Arthropoda: Insects Hindgut Digestive system P1 segment Nasutitermes corniger hindgut 26.135833 -80.129444 209855554 736170 41 9 50 7 Unrestricted 0.0 Metagenome 3300000870 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and M1 (3) DOE Joint Genome Institute (JGI) 3300000870 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 56451217 107681 34 0 41 0 SRX3782532 0.0 Metagenome 3300012156 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ004 MetaG DOE Joint Genome Institute (JGI) 3300012156 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.9181 -74.5222 216943782 409966 218 34 313 76 SRX3539434 Unrestricted 0.0 Metagenome 3300004077 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_ThreeSqC_D2 DOE Joint Genome Institute (JGI) 3300004077 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.131752 -122.266335 874863250 2981041 889 10 1902 36 SRX7150275 Unrestricted 0.0 Metagenome 3300003645 *Microbiome Permanent Draft Estuary microbial community from Gulf of Naples, Italy Estuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 1 Stazione Zoologica Anton Dohrn 3300003645 Metagenome Analysis released per JGI data releasing policy No Yes stefan.thiele@szn.it Stefan Thiele Yes 28063827 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Estuarine 40.7245 14.3775 8.1 109383973 272412 215 2 387 3 ERX1031421 0.0 Metagenome 3300069339 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Moab, Southern Rockies & Colorado Plateau, UT, USA - MOAB_005-M-20170522-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069339 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.24833 -109.38827 76300119 227857 158 6 307 8 0.0 Metagenome 3300030116 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_062 - TARA_R100000329 CEA Genoscope 3300030116 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -22.3368 40.3412 329080037 709281 15 0 26 0 0.0 Metagenome 3300001898 *Microbiome Permanent Draft Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils (2) Desert soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils - Control dataset for oil perturbed soil, Sample 4 3300001898 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Terrestrial Unclassified Soil Desert Grassland soil 23.850674 69.734802 0 0 0 0 0 0 0.0 Metagenome 3300039593 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_060-M-20170706-COMP-DNA1 Battelle Memorial Institute 3300039593 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 88838762 224559 110 11 198 16 0.0 Metagenome 3300029570 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P031V6 Beijing Genomics Institute (BGI) 3300029570 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 178942951 239162 155 0 240 0 0.0 Metagenome 3300050348 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-C1 50-54 DOE Joint Genome Institute (JGI) 3300050348 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0435 768623557 1215755 372 0 560 0 Restricted 0.0 Metagenome 3300029862 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37353 Beijing Genomics Institute (BGI) 3300029862 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 216989928 263296 146 0 218 0 0.0 Metagenome 3300040314 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Jornada LTER, Desert Southwest, NM, USA - JORN_002-M-20170808-COMP-DNA1 Battelle Memorial Institute 3300040314 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Desert Terrestrial soil 32.59068 -106.84254 5397982 15220 12 0 22 0 0.0 Metagenome 3300003057 *Microbiome Permanent Draft Marine viral communities from Ross Sea water Marine viral communities from Ross Sea, Antarctica 3300003057 Metagenome Analysis Made public because these are downloaded from Genbank No Yes nckyrpides@lbl.gov Maas,E.W., Nikos Kyrpides No Environmental Aquatic Oceanic Marine Unclassified Marine -75.00001 -175.000075 221803 444 0 0 0 0 0.0 Metagenome 3300038787 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-10-1_at_6-7_cm Illumina 3300038787 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.88147 -73.76618 548766747 1467577 718 22 1564 40 0.0 Metagenome 3300042957 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-436 Genome Quebec 3300042957 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 52.638048 -109.898255 1898511838 4126926 835 200 1453 389 0.0 Metagenome 3300000907 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 DOE Joint Genome Institute (JGI) 3300000907 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 23670115 75901 164 15 277 33 SRX1985410, SRX2021669, SRX1985409 Unrestricted 0.0 Metagenome 7000000138 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human Vaginal introitus microbial communities from NIH, USA - visit 1, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000138 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Introitus Human 39.0042816 -77.1012173 2670476 3729 0 0 0 0 0.0 Metagenome 3300042665 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A44 University of California, Davis 3300042665 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 216603711 610645 305 6 553 10 0.0 Metagenome 3300000691 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 53 DOE Joint Genome Institute (JGI) 3300000691 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 6771981 22024 32 0 45 0 SRX4340976 Unrestricted 0.0 Metagenome 3300035184 *Microbiome Finished Marine microbial communities from Northern Baffin Bay, Arctic Ocean Marine microbial communities from Northern Baffin Bay, Arctic Ocean - surface_st115_2017 CEA Genoscope 3300035184 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy Yes Yes nastasia.freyria.1@ulaval.ca Nastasia Freyria No Environmental Aquatic Oceanic Marine Photic zone marine 76.21 -71.15 1177750355 3313499 565 356 830 583 0.0 Metagenome 3300007074 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK8 DOE Joint Genome Institute (JGI) 3300007074 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli, Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 300659399 758049 143 3 270 6 SRX2746611 Unrestricted 0.0 Metagenome 3300026116 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026116 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 4696974976 11206238 2365 256 4078 405 SRX2784949 Unrestricted 0.0 Metagenome 3300032182 *Microbiome Permanent Draft Microbial communities from various environments in Magnetic Island Reef, Townsville, Australia Seawater microbial communities from Magnetic Island Reef, Townsville, Australia - 36327 AGRF 3300032182 Metagenome Analysis SpAdes v. 3.13.0 released by JGI data releasing policy Yes Yes b.glasl@aims.gov.au Bettina Glasl No Environmental Aquatic Coastal Marine Unclassified Seawater -19.1531 146.8641 833870885 1843401 370 47 525 116 0.0 Metagenome 3300054081 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_20_40 re-annotation DOE Joint Genome Institute (JGI) 3300054081 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 268907544 490614 131 3 185 2 SRX3005972 0.0 Metagenome 3300022817 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R3 Version 2 University of New South Wales 3300022817 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 72613868 128731 38 3 54 4 0.0 Metagenome 7000000545 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 404239096 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000545 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 67414479 132003 0 0 0 0 0.0 Metagenome 3300013705 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100248 University of Pennsylvania 3300013705 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9880059 29891 23 0 38 2 SRX756653 0.0 Metagenome 3300006893 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG DOE Joint Genome Institute (JGI) 3300006893 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jkjarett@lbl.gov, rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca Jessica Jarett, Ramunas Stepanauskas; Peter Dunfield No Environmental Aquatic Hot (42-90C) Thermal springs Acidic iron-sulfur acid spring 51.1699 -116.1578 4.19 2007261043 3580819 937 64 1557 142 SRX2838986 Unrestricted 0.0 Metagenome 3300000227 *Microbiome Draft Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- AS07_7 DOE Joint Genome Institute (JGI) 3300000227 Metagenome Analysis released based on JGI ITS Yes Yes jlm80@psu.edu Jennifer Macalady No Environmental Aquatic Groundwater Freshwater Cave water Groundwater 42.766667 13.4 300437395 538069 269 5 407 9 Unrestricted 0.0 Metagenome 3300013093 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG DOE Joint Genome Institute (JGI) 3300013093 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 46.041 -89.686 823432030 1474108 459 168 693 252 SRX3566311 Unrestricted 17.14 Metagenome 3300027752 *Microbiome Permanent Draft Marine microbial communities from western Arctic Ocean Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027752 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh Yes 30271971 Environmental Aquatic Oceanic Marine Unclassified Marine 73.2247 -150.2247 745443261 1445610 270 149 366 239 SRX2997168 Unrestricted 0.0 Metagenome 3300067230 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210606_10_05 DOE Joint Genome Institute (JGI) 3300067230 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 463108059 729194 246 159 359 225 Unrestricted 0.0 Metagenome 3300042618 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Procryptotermes leewardensis from Pointe de la Grande Vigie, Guadeloupe, France - Pcl387 Eurofins MWG Operon 3300042618 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 16.510183 -61.4658 901632603 1013828 222 35 263 54 0.0 Metagenome 3300015276 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_01AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015276 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 114975289 212990 15 54 24 63 SRX3923698 Unrestricted 10.87 Metagenome 3300008688 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 861967750 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008688 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 182090879 306309 156 0 200 0 0.0 Metagenome 3300008407 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 764305738 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008407 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 4330779 6245 6 0 10 2 SRX098550, SRX024152 0.0 Metagenome 3300035000 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Desmonostoc geniculatum HA4340-LM1 and co-occurring heterotrophs from cave wall surface from Maniniholo cave, Kauai, Hawaii, United States - 20181024_15A DOE Joint Genome Institute (JGI) 3300035000 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Cave Deep subsurface Wall surface Cave wall surface 22.2199 -159.566 65408878 85450 36 0 28 0 SRX8237554 Unrestricted 234.96 Metagenome 3300040793 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Salins du Lion, Vitrolles, France - D131 Genopole Toulouse Midi-Pyrenees 3300040793 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.45 5.2264 277982671 538408 241 22 470 39 0.0 Metagenome 3300020583 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M DOE Joint Genome Institute (JGI) 3300020583 Metagenome Analysis spades v. 3.10.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 2975423261 6033410 739 95 1312 132 SRX4026205 Unrestricted 13.63 Metagenome 3300025262 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP0901 (SPAdes) DOE Joint Genome Institute (JGI) 3300025262 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -33.55 39.89 113415867 231407 145 1 255 1 SRX1982924 Unrestricted 0.0 Metagenome 3300002055 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - A-A2 J. Craig Venter Institute (JCVI) 3300002055 Metagenome Analysis Released per Alexandra J. Roth Schulze (April 1, 2016) No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 101444815 311095 24 21 76 40 0.0 Metagenome 3300010211 *Microbiome Permanent Draft Phototrophic microbial communities Intertidal zone phototrophic microbial communities from Little Sippewissett Salt Marsh, Woods Hole, MA - SCR11c Marine Biological Laboratory 3300010211 Metagenome Analysis CLC released per JGI data release policy No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Intertidal zone Marine Salt marsh salt marsh 41.5758508 -70.635807 80979748 93710 25 0 41 0 0.0 Metagenome 3300032251 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Coastal sediment microbial communities from Oude Bieten Haven, Netherlands - site A anoxic DOE Joint Genome Institute (JGI) 3300032251 Metagenome Analysis spades v. 3.13.0 Yes Yes jbeam@bigelow.org; demerson@bigelow.org Jake Beam; David Emerson No Environmental Aquatic Coastal Marine Sediment sediment 51.4666 4.071 1499597563 3247827 916 11 1560 25 SRX5822384 Unrestricted 9.92 Metagenome 3300045019 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_350m_2014 DOE Joint Genome Institute (JGI) 3300045019 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 677777369 1352646 577 6 893 3 Unrestricted 24.01 Metagenome 3300025775 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC2 2012 metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025775 Metagenome Analysis spades v. 3.11.1 Yes Yes jkjarett@lbl.gov; rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca Jessica Jarett; Ramunas Stepanauskas; Peter Dunfield No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 49.9543 -116.5155 7.93 179603298 232836 144 0 156 0 SRX2839018 Unrestricted 0.0 Metagenome 3300005988 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 9/18/14 C2 DNA DOE Joint Genome Institute (JGI) 3300005988 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ebyoung@uwm.edu Erica Young, Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 1657687523 4433685 1227 423 1974 775 SRX2748448 Unrestricted 0.0 Metagenome 7000000406 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159713063 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000406 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 89347988 165500 0 0 0 0 0.0 Metagenome 3300050224 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Warrenville, Illinois, USA - 62_707_IL_DR_0cm_c2_T1_18O DOE Joint Genome Institute (JGI) 3300050224 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 41.84145 -88.2298 649211536 1130467 233 3 388 4 Restricted 15.73 Metagenome 3300005491 *Microbiome Finished Sediment methylotrophic communities from Lake Washington, Seattle, Washington, USA Sediment ecosystem from Lake Washington, Seattle, Washington, USA - Formaldehyde enrichment DOE Joint Genome Institute (JGI) 3300005491 Metagenome Analysis LUCY, PGA Assembler released based on JGI ITS Yes Yes milachis@u.washington.edu, milachis@u.washington.edu; lidstrom@uw.edu Lumila Chistoserdova, Ludmila Chistoserdova; Mary Lidstrom Yes 18711340 Environmental Aquatic Lentic Freshwater Sediment Sediment 47.63458 -122.26655 57559745 112232 25 1 55 3 Unrestricted 0.0 Metagenome 3300013939 *Microbiome Permanent Draft Epidermal mucus viral and microbial communities from European eel in Spain Epidermal mucus viral and microbial communities from European eel in Spain - Ebro delta (1.0 um filter) University of Valencia 3300013939 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Fish Skin Integumentary system Epidermal mucus Epidermal mucus 40.647955 -0.738702 122047098 192735 33 4 69 4 SRX703649 0.0 Metagenome 3300009883 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA13 University of New South Wales 3300009883 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 52189880 75551 36 2 45 3 0.0 Metagenome 3300031588 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - CBN3_SCM DOE Joint Genome Institute (JGI) 3300031588 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified Marine 80.9595 -132.1842 618642366 1268787 472 136 824 229 SRX5797859 Unrestricted 17.3 Metagenome 3300024334 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 89D DOE Joint Genome Institute (JGI) 3300024334 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 299887017 623909 258 57 353 96 SRX4474206 Unrestricted 13.33 Metagenome 3300049071 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - G7_B_BS (version 2) DOE Joint Genome Institute (JGI) 3300049071 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 156095842 357432 504 18 1122 25 Unrestricted 0.0 Metagenome 3300048566 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - Maria852 DOE Joint Genome Institute (JGI) 3300048566 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Sand Soil Desert sand -78.0731 163.7171 158016349 394458 221 8 378 18 Unrestricted 0.0 Metagenome 3300038462 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-3-M (v2) (version 2) DOE Joint Genome Institute (JGI) 3300038462 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0467 718299524 1427764 427 4 717 7 SRX8138015, SRX8138016 Unrestricted 0.0 Metagenome 3300006983 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Dobu ""control"", cg1dc" University of New South Wales 3300006983 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Cinachyra sp. (marine sponge) -9.752083 150.854133 22710283 59385 17 4 33 2 0.0 Metagenome 3300034998 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P4_June_2015_1300m DOE Joint Genome Institute (JGI) 3300034998 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 48.65 -126.6666 347428481 764354 398 32 613 39 SRX8192082 Unrestricted 19.4 Metagenome 3300042876 *Microbiome Permanent Draft Rhizosphere and rhizoplane microbial communities from rice plants in Newark, Delaware, United States Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED DOE Joint Genome Institute (JGI) 3300042876 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes angelias@udel.edu Angelia Seyfferth No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 39.66844 -75.7447 2318305367 3675772 952 30 1529 44 SRX19813602 Unrestricted 10.29 Metagenome 3300012100 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ092 MetaG DOE Joint Genome Institute (JGI) 3300012100 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 41.8102 -72.2564 60691243 109492 10 89 11 212 SRX3539749 Unrestricted 0.0 Metagenome 3300049707 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_B_2_drought DOE Joint Genome Institute (JGI) 3300049707 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 178814657 400623 381 25 697 33 Unrestricted 12.37 Metagenome 3300009039 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Lake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cm DOE Joint Genome Institute (JGI) 3300009039 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes brian.hedlund@unlv.edu, rstepanauskas@bigelow.org; nravin@biengi.ac.ru; brian.hedlund@unlv.edu Brian P. Hedlund, Ramunas Stepanauskas; Nikolai Ravin; Brian Hedlund No Environmental Aquatic Lake Freshwater Sediment Lake sediment 53.7598 107.9791 7.32 726041767 1453136 818 3 1508 1 SRX2753868 Unrestricted 0.0 Metagenome 3300002109 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A1-11 DOE Joint Genome Institute (JGI) 3300002109 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 768559 2769 29 0 55 0 SRX1990514 Unrestricted 0.0 Metagenome 3300027512 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027512 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Host-associated Plants Rhizosphere Roots Soil Vadose zone soil 39.7291 -123.6419 268271162 631009 197 13 375 26 SRX2933107 Unrestricted 0.0 Metagenome 3300015082 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Storglaciaren, Tarfala, Sweden (Sample st-11c, vegetated hydrological feature) University of Bristol 3300015082 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.904687 18.610965 6.6 103140952 241697 147 6 268 15 0.0 Metagenome 3300014641 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01379 Weill Cornell Medical College 3300014641 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.62 -74.02 21509702 33149 16 0 18 0 SRX823319 0.0 Metagenome 3300049156 *Microbiome Permanent Draft Marine sediment microbial communities from Pacific Ocean, California, USA Marine sediment microbial communities from Pacific Ocean, California, USA - SSC_C1_L5 DOE Joint Genome Institute (JGI) 3300049156 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pjensen@ucsd.edu Paul r. Jensen No Environmental Aquatic Oceanic Marine Sediment Marine sediment 32.71 -117.38 336532165 576947 229 1 423 1 Unrestricted 19.25 Metagenome 3300005898 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_405 DOE Joint Genome Institute (JGI) 3300005898 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 495391680 1550811 538 6 1044 23 SRX2564570, SRX2581036 Unrestricted 0.0 Metagenome 3300026507 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B DOE Joint Genome Institute (JGI) 3300026507 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 214270634 536227 233 13 406 10 SRX4802677 Unrestricted 9.58 Metagenome 3300012084 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ018 MetaG DOE Joint Genome Institute (JGI) 3300012084 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.7781 -74.6307 242891846 450440 50 85 76 158 SRX3539455 Unrestricted 0.0 Metagenome 2014031006 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP7 Chocolate Pots v1 DOE Joint Genome Institute (JGI) 2014031006 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23761787 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.710087 -110.7413395 6 31857986 43900 0 0 0 0 Unrestricted 0.0 Metagenome 3300001283 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 DOE Joint Genome Institute (JGI) 3300001283 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 18058404 58075 219 22 346 34 SRX3305187 Unrestricted 0.0 Metagenome 3300009993 *Microbiome Permanent Draft Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_106 metaG DOE Joint Genome Institute (JGI) 3300009993 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes esinger@lbl.gov; twoyke@lbl.gov Esther Singer; Tanja Woyke No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass associated 30.387 -97.7301 57889147 121245 116 18 220 26 SRX3197607 Unrestricted 0.0 Metagenome 3300004194 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 68_HOW9 DOE Joint Genome Institute (JGI) 3300004194 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 130043299 306053 97 15 175 30 SRX2720762 Unrestricted 0.0 Metagenome 3300030042 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_1 DOE Joint Genome Institute (JGI) 3300030042 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 464853879 838946 317 110 491 161 SRX5357463 Unrestricted 11.52 Metagenome 3300020020 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - L2a1 DOE Joint Genome Institute (JGI) 3300020020 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.8827 -106.9107 379271646 783721 286 31 492 46 SRX3958586, SRX3958585 Unrestricted 0.0 Metagenome 3300029361 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 046_3_10_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029361 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 252330196 333088 295 1 368 0 0.0 Metagenome 3300000036 *Microbiome Draft Passalidae beetle gut microbial communities from Costa Rica Passalidae beetle gut microbial communities from Costa Rica - Gallery material (4MSU+4BSU+3MSU+3BSU) DOE Joint Genome Institute (JGI) 3300000036 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes davidhs@lsi.umich.edu, davidhs@umich.edu David Sherman No Host-associated Arthropoda: Insects Hindgut Digestive system Fecal Passalidae beetle gut 10.207151 -84.007673 170323120 433068 413 65 754 117 Unrestricted 0.0 Metagenome 3300044628 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME22Jul2016-rr0879 DOE Joint Genome Institute (JGI) 3300044628 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1152434816 1739817 418 89 604 125 Unrestricted 17.55 Metagenome 3300037477 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - CCW_101317 DOE Joint Genome Institute (JGI) 3300037477 Metagenome Analysis metaspades v. 3.13.0 Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.9035 -89.3341 726044347 1917728 642 39 1234 80 SRX9381725 Unrestricted 7.03 Metagenome 3300006627 *Microbiome Permanent Draft Soil microbial communities from the Leymus chinensis steppe, China - nitrogen deposition Soil microbial communities from the Leymus chinensis steppe, China - after adding 28 g N m- 2, yr-1 Chengdu Institute of Biology, Chinese Academy of Sciences 3300006627 Metagenome Analysis velvet released per JGI data release policy No Yes ruijp@cib.ac.cn Junpeng Rui No Environmental Terrestrial Unclassified Soil Unclassified soil 43.63 116.7 338697082 1286335 491 44 676 128 0.0 Metagenome 3300039173 *Microbiome Finished Marine algae associated bacterial community from Sydney, Australia Marine algae associated bacterial community from Sydney, Australia - Ulva australis_2R6 w/o D2 Ramaciotti Centre for Genomics 3300039173 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes j.nappi@unsw.edu.au Jadranka Nappi No Host-associated Algae Unclassified Unclassified Unclassified Marine -33.990304 151.231529 259293820 379242 35 5 77 8 0.0 Metagenome 3300017992 *Microbiome Permanent Draft Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_S_1 metaG DOE Joint Genome Institute (JGI) 3300017992 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes valentine@geol.ucsb.edu David Valentine No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Sediment Hypersaline lake sediment 33.3 -115.8 3236390062 6705289 2178 54 3908 103 SRX3905691 Unrestricted 5.52 Metagenome 3300070593 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_003-M-20190620-COMP-DNA1 Battelle Memorial Institute 3300070593 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 45.831516 -122.018608 5.08-5.37 8368107 27113 23 7 43 5 0.0 Metagenome 3300047284 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Colorado River, Arizona, USA - NASQAN2015_111 DOE Joint Genome Institute (JGI) 3300047284 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 32.7186 -114.7188 423305849 828209 362 34 612 62 Unrestricted 18.82 Metagenome 3300026004 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_302 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026004 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 50699150 135936 137 5 234 9 SRX2564885, SRX2581047 Unrestricted 0.0 Metagenome 3300027959 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB14_supernatant (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027959 Metagenome Analysis spades v. 3.11.1 Yes Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 576023234 1215965 530 16 797 31 SRX2838878 Unrestricted 0.0 Metagenome 2119805005 *Microbiome Permanent Draft Hydrothermal vent microbial communiites from Tahi Moana, Eastern Lau Basin, Pacific Ocean Hydrothermal vent microbial communiites from Tahi Moana, Eastern Lau Basin, Pacific Ocean Oak Ridge National Laboratory 2119805005 Metagenome Analysis CLC Bio package released per JGI data release policy No Yes podarm@ornl.gov Mircea Podar No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent -22.0 -176.0 53343836 136388 157 0 298 0 0.0 Metagenome 3300006291 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 604812005 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006291 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 33611656 75936 30 0 76 0 0.0 Metagenome 3300019738 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLT_0-1_MG DOE Joint Genome Institute (JGI) 3300019738 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 130676656 317699 242 27 442 56 SRX3983360 Unrestricted 3.66 Metagenome 3300003393 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD DOE Joint Genome Institute (JGI) 3300003393 Metagenome Analysis Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 274411018 685601 281 29 454 60 SRX2564972 Unrestricted 0.0 Metagenome 3300037800 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Pelatocladus maniniholoensis HA4357-MV3 and co-occurring heterotrophs from cave wall surface from Maniniholo cave near Haena, Hawaii, United States - 20190131_40 DOE Joint Genome Institute (JGI) 3300037800 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Cave Deep subsurface Wall surface Cave wall surface 22.2199 -159.566 7454253 6967 3 0 1 0 SRX9167939 Unrestricted 1232.16 Metagenome 3300034974 *Microbiome Finished Coastal sediment microbial communities from Western Antarctica Coastal sediment microbial communities from Western Antarctica - 4_event103 Megahit 103 Michigan State University 3300034974 Metagenome Analysis Megahit v. 1.1 released by Deric Learman No Yes deric.learman@cmich.edu Deric Learman No Environmental Aquatic Coastal Marine Sediment marine sediment -75.4987 166.2995 196566314 454445 171 39 362 91 0.0 Metagenome 3300009152 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG DOE Joint Genome Institute (JGI) 3300009152 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh Yes 29921005 Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 48.2311 -71.2508 1240187296 2374024 840 117 1345 221 SRX2996492 Unrestricted 0.0 Metagenome 3300034392 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 8HMS DOE Joint Genome Institute (JGI) 3300034392 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Sub-biocrust Soil Unclassified sub-biocrust soil 34.7856 -115.66 150962001 406506 334 21 679 28 SRX7615301 Unrestricted 7.76 Metagenome 3300029190 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012055-14 Beijing Genomics Institute (BGI) 3300029190 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 91370088 108904 58 1 75 1 0.0 Metagenome 3300012587 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100703 University of Pennsylvania 3300012587 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 15157741 34415 42 5 91 11 SRX756147 0.0 Metagenome 3300023041 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung D1 DOE Joint Genome Institute (JGI) 3300023041 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Elk feces 38.04 -122.5 77518334 190468 360 3 639 8 SRX4415386 Unrestricted 8.01 Metagenome 3300038507 *Microbiome Permanent Draft Organic and conventional farm associated microbial communities from Canada and USA Wastewater microbial communities from Conventional dairy farm in Colorado, USA - WW25 Colorado State University 3300038507 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 40.7 -105.0 48376607 102087 76 0 136 0 0.0 Metagenome 3300030315 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from adenoma patient in Ann Arbor, USA - MG100199 University of Michigan 3300030315 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 42.28 -83.74 23668855 44034 49 0 65 0 0.0 Metagenome 3300027685 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic Ocean affecting the dissolved organic carbon pool Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Bottom_A/KNORR_S2/LV (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027685 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -37.9728 -44.9905 536945988 1081771 383 25 670 46 SRX2566748 Unrestricted 0.0 Metagenome 3300056624 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Activated sludge microbial communities from bioreactor in WWTP, Madison, WI, USA - RS_2020-02-12_SampleB DOE Joint Genome Institute (JGI) 3300056624 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.03331 -89.35633 722705287 737480 249 25 249 25 Unrestricted 13.57 Metagenome 3300021363 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - L3c2 DOE Joint Genome Institute (JGI) 3300021363 Metagenome Analysis spades v. 3.11.1-check Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9134 -106.8956 803302692 1770197 412 29 768 49 SRX3944415 Unrestricted 11.58 Metagenome 3300012355 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG DOE Joint Genome Institute (JGI) 3300012355 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.5673 -123.4758 1941417925 3725844 1128 23 2015 35 SRX3372706 Unrestricted 0.0 Metagenome 3300031723 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23 DOE Joint Genome Institute (JGI) 3300031723 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1834341367 4608836 402 1 601 2 SRX5817149 Unrestricted 12.5 Metagenome 3300004178 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 14_LOW5 DOE Joint Genome Institute (JGI) 3300004178 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 223726592 586909 114 0 210 0 SRX2720117 Unrestricted 0.0 Metagenome 3300012569 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100501 University of Pennsylvania 3300012569 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 10292265 27852 16 0 23 0 SRX756497 0.0 Metagenome 3300026180 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_D1_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026180 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4965 -122.133 389727947 754442 380 9 609 12 SRX2523664 Unrestricted 0.0 Metagenome 3300013732 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01026 Weill Cornell Medical College 3300013732 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.83 22922373 44101 22 0 30 0 SRX822988 0.0 Metagenome 3300035309 *Microbiome Permanent Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-2_at_0-1_cm Genome Quebec 3300035309 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89934 -73.72822 326982266 911508 598 63 1323 113 0.0 Metagenome 3300069618 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_003-M-20131217-COMP-DNA1 re-annotation Argonne National Laboratory 3300069618 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 3665092 10571 55 8 116 21 ERX2133975 0.0 Metagenome 3300005874 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_404 DOE Joint Genome Institute (JGI) 3300005874 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 278798404 916066 476 17 922 32 SRX2564778, SRX2581042 Unrestricted 0.0 Metagenome 3300001991 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2 DOE Joint Genome Institute (JGI) 3300001991 Metagenome Analysis Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 391415732 1131090 936 47 1772 89 SRX2554581 Unrestricted 0.0 Metagenome 3300020728 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 03JUN2009 epilimnion DOE Joint Genome Institute (JGI) 3300020728 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 138407268 277226 126 52 198 75 Unrestricted 0.0 Metagenome 3300039085 *Microbiome Permanent Draft Wedge-polygon permafrost microbial communities from Axel Heiberg Island, Canada Wedge-polygon permafrost microbial communities from Axel Heiberg Island, Canada - P3_FPA McGill University 3300039085 Metagenome Analysis canu v. 1.8 released by JGI data releasing policy No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.45 265739 468 0 0 0 0 0.0 Metagenome 3300016476 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water catchment in Singapore - WC_Site 1c, Aug Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016476 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 1.35 103.87 105548923 147800 27 14 29 11 0.0 Metagenome 3300002560 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm DOE Joint Genome Institute (JGI) 3300002560 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.718176 -123.652732 406802207 897339 85 13 322 21 SRX1991096 Unrestricted 0.0 Metagenome 3300001488 *Microbiome Permanent Draft Human fecal microbial communities from Yokohama, Japan, from an infant Human fecal microbial communities from Yokohama, Japan, from healthy Japanese individuals - infant_stool_phages Baylor College of Medicine, Human Genome Sequencing Center 3300001488 Metagenome Analysis released per JGI data release policy No Yes sari.peura@jyu.fi Sari Peura No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 35.490139 139.683694 175096 326 0 0 0 0 0.0 Metagenome 3300001607 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF025 DOE Joint Genome Institute (JGI) 3300001607 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.17263 282222 992 11 0 16 1 SRX2014342 Unrestricted 0.0 Metagenome 3300044475 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - LOSB181-9-18-19 DOE Joint Genome Institute (JGI) 3300044475 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.9897 -120.8552 525152144 1060275 338 24 441 41 Restricted 18.15 Metagenome 3300011140 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01018 Weill Cornell Medical College 3300011140 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.66 -73.83 27018314 31742 13 0 17 0 SRX822980 0.0 Metagenome 3300043455 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-410 Genome Quebec 3300043455 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.571367 -100.190743 889715322 2234870 195 21 330 39 0.0 Metagenome 3300029326 *Microbiome Permanent Draft Human fecal microbial communities from healthy and liver cirrhosis patients in Hangzhou, China Human fecal microbial communities from healthy subjects in Hangzhou, China - HD-62_Run5 Zhejiang University 3300029326 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 30.0 120.0 120925908 185613 157 0 273 0 0.0 Metagenome 3300039766 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_035-O-20170801-COMP-DNA1 Battelle Memorial Institute 3300039766 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 40963495 114564 78 9 147 16 0.0 Metagenome 3300007098 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 765135172 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007098 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 113398014 168822 109 0 191 0 0.0 Metagenome 3300001149 *Microbiome Permanent Draft Recombinant microbial communities from the University of Alicante, Spain Recombinant microbial communities from the University of Alicante, Spain - Rec.Down10Kb 454 Life Sciences 3300001149 Metagenome Analysis released per JGI data release policy No Yes pedro.gonzalez@ua.es Pedro Gonz?lez-Torres, Pedro I?aki Gonzalez Torres No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Recombinated 38.38474 -0.513297 37816931 49788 73 0 110 0 0.0 Metagenome 3300002384 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 08OCT2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002384 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 31426013 83116 52 6 110 13 SRX1989918 Unrestricted 0.0 Metagenome 3300053110 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 endosphere DOE Joint Genome Institute (JGI) 3300053110 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121608 -123.269447 575392025 766404 64 102 67 120 Unrestricted 0.0 Metagenome 3300041073 *Microbiome Permanent Draft Contaminated soil microbial communities from Humid Pampas, Chascomus Partido, Argentina Contaminated soil microbial communities from Humid Pampas, Chascomus Partido, Argentina - L1_146 v. 2 Illumina 3300041073 Metagenome Analysis Megahit v. 1.2.9 released by JGI data releasing policy No Yes valeria.imperato@uhasselt.be Valeria Imperato No Environmental Terrestrial Unclassified Soil Agricultural land Contaminated soil -35.5787 -58.0138 14544654 33467 32 0 47 4 0.0 Metagenome 3300051220 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - IR.B.S.T-25 (v3) (version 3) DOE Joint Genome Institute (JGI) 3300051220 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 52041181 106248 73 25 146 38 SRX4415253 Unrestricted 0.0 Metagenome 3300005382 *Microbiome Draft Bankia setacea gill microbial communities from Puget Sound, Washington, USA Bankia setacea gill microbial communities from Puget Sound, Washington, USA - single cell DOE Joint Genome Institute (JGI) 3300005382 Metagenome Analysis Velvet released based on JGI ITS No Yes distel@oglf.org Daniel Distel, Dan Distel No Host-associated Mollusca Unclassified Digestive system Unclassified Bankia setacea gill 47.85072 -122.33843 1446713 1578 1 0 1 0 Unrestricted 0.0 Metagenome 3300059485 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Mesophilic digester sludge microbial communities from biogas plant in Weichs, Bavaria, Germany - PB8_MG_251018 DOE Joint Genome Institute (JGI) 3300059485 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 48.39537892 11.44760761 566460059 954794 772 7 1155 11 Unrestricted 0.0 Metagenome 3300020329 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000678 (ERX555981-ERR599083) CEA Genoscope 3300020329 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -8.978 -139.2432 267446885 677988 292 20 448 26 0.0 Metagenome 3300001881 *Microbiome Permanent Draft Bioremediated contaminated groundwater microbial communities from North Railroad Avenue plume (NRAP), New Mexico Bioremediated contaminated groundwater microbial communities from EPA Superfund site, New Mexico - SAE3-05 DOE Joint Genome Institute (JGI) 3300001881 Metagenome Analysis Yes Yes reiss@nmt.edu, NNIvanova@lbl.gov; rebecca.reiss@nmt.edu Rebecca Reiss, Natalia Ivanova; Rebecca Reiss Yes 27980706 Environmental Aquatic Groundwater Deep subsurface Contaminated Bioremediated contaminated groundwater 35.992 -106.0797 198477119 387362 231 6 387 4 SRX3322776 Unrestricted 0.0 Metagenome 7000000654 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764305738 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000654 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 75573588 129723 0 0 0 0 0.0 Metagenome 3300010336 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015 DOE Joint Genome Institute (JGI) 3300010336 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 1213219831 2690659 699 14 1216 15 SRX2525073 Unrestricted 0.0 Metagenome 3300035674 *Microbiome Permanent Draft Biological soil crust microbial communities from Mojave Desert, California, United States Biological soil crust microbial communities from Mojave Desert, California, United States - CLC_S1 DOE Joint Genome Institute (JGI) 3300035674 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erik@olemiss.edu Erik Hom No Environmental Terrestrial Soil crust Soil Biological soil crust 34.1736 -115.3888 1670634619 3416953 1234 22 2134 44 SRX8380275 Unrestricted 12.08 Metagenome 3300001125 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0204 DOE Joint Genome Institute (JGI) 3300001125 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 7.33 -26.0 43567243 107380 71 2 150 4 SRX1983336 Unrestricted 0.0 Metagenome 7000000383 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159632143 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000383 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 6854885 17044 0 0 0 0 0.0 Metagenome 3300003215 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF DOE Joint Genome Institute (JGI) 3300003215 Metagenome Analysis Yes Yes dangl@email.unc.edu, dangl@email.unc.edu; NNIvanova@lbl.gov Jeff Dangl, Jeff Dangl; Natalia Ivanova No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.9082 -79.0499 356584568 628557 156 3 317 7 SRX2562211 Unrestricted 0.0 Metagenome 3300026481 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A DOE Joint Genome Institute (JGI) 3300026481 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 180069084 461510 190 22 333 41 SRX4801798 Unrestricted 10.1 Metagenome 3300014548 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS68_6 University of Hohenheim 3300014548 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 95142474 155840 59 0 119 0 0.0 Metagenome 3300026998 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF046 (SPAdes) DOE Joint Genome Institute (JGI) 3300026998 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 84994676 239610 59 6 147 6 SRX2014384 Unrestricted 0.0 Metagenome 3300017468 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS376 with 0.8UM filter JGI facility at Oak Ridge National Laboratory 3300017468 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 35452111 71036 47 5 75 6 0.0 Metagenome 3300003268 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_07_M0_10 DOE Joint Genome Institute (JGI) 3300003268 Metagenome Analysis Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 98609327 228049 184 21 341 53 SRX2570687 Unrestricted 0.0 Metagenome 3300017415 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_12SEP2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017415 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 202701730 370098 74 82 98 100 SRX3926668 Unrestricted 9.07 Metagenome 3300038392 *Microbiome Draft Exploring Bacterial and Archaeal Diversity in several hot springs in Bulgaria Thermal spring sediment microbial communities from Rupi 1 hot spring near Rupite Village, Bulgaria - R1S Eurofins Genomics India Pvt Ltd. 3300038392 Metagenome Analysis Denovo v. 3.2 released by JGI data releasing policy Yes Yes nikoleta708@gmail.com Nikoleta Boteva No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 41.459466 23.262858 8.2 79277550 138753 60 2 109 0 0.0 Metagenome 3300038974 *Microbiome Permanent Draft Metagenomes from Anaerobic Digestors at Pulp and Paper Mills Anaerobic digester sludge microbial community from a pulp and paper mill in Alberta, Canada - MWAHD1180117 MSP University of Toronto 3300038974 Metagenome Analysis spades v. 3.12.0 Yes Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Engineered Bioreactor Unclassified Anaerobic Unclassified anaerobic sludge 54.1274 -115.6516 375747886 438567 100 2 162 1 0.0 Metagenome 3300044521 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 372-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044521 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.991 -107.0642 1074005536 2227076 423 10 733 17 Unrestricted 10.07 Metagenome 3300040603 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from LBJ National Grassland , Southern Plains, TX, USA - CLBJ_033-O-20160815-COMP-DNA1 Battelle Memorial Institute 3300040603 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 33.40123 -97.57 1707220 5456 19 4 43 3 0.0 Metagenome 3300014135 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_043 The George Washington University (GWU) 3300014135 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 44811661 73694 43 6 66 8 SRX656276 0.0 Metagenome 3300029988 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_3 DOE Joint Genome Institute (JGI) 3300029988 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 840130843 1697093 280 28 417 51 SRX5355754 Unrestricted 11.21 Metagenome 3300009775 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC109_MetaG DOE Joint Genome Institute (JGI) 3300009775 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 22.28 114.17 885675182 1740889 869 10 1379 16 SRX2338869 Unrestricted 0.0 Metagenome 3300051379 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - ATCR3D-14 DOE Joint Genome Institute (JGI) 3300051379 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 699566461 1174753 549 36 828 60 Unrestricted 63.8 Metagenome 3300013695 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100644 University of Pennsylvania 3300013695 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 10919060 26279 18 0 30 0 SRX756450 0.0 Metagenome 3300029491 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001846-96 Beijing Genomics Institute (BGI) 3300029491 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 151715421 200994 117 0 167 0 0.0 Metagenome 3300032126 *Microbiome Permanent Draft Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 DOE Joint Genome Institute (JGI) 3300032126 Metagenome Analysis spades v. 3.12.0 Yes Yes agaudin@ucdavis.edu Amelie Gaudin No Host-associated Plants Rhizosphere Roots Soil rhizosphere 38.5 -121.7 5178927756 13306167 2624 173 4748 292 SRX5801025 Unrestricted 9.19 Metagenome 2070309009 *Microbiome Permanent Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Kansas, Native Prairie soil v1 DOE Joint Genome Institute (JGI) 2070309009 Metagenome Analysis Velvet released based on JGI ITS No Yes janet.jansson@pnnl.gov Janet Jansson Yes 30158906 Environmental Terrestrial Unclassified Soil Grasslands Soil 39.214012 -96.585283 7.6 375620835 1065090 103 0 227 0 Unrestricted 0.0 Metagenome 3300011848 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00353 Weill Cornell Medical College 3300011848 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.51 -74.23 45856996 67403 20 0 33 0 SRX822325 0.0 Metagenome 3300045403 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-501 Genome Quebec 3300045403 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 52.340193 -125.204735 1211443410 2669342 525 197 869 286 0.0 Metagenome 3300020270 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001029 (ERX555928-ERR599042) CEA Genoscope 3300020270 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -25.859 -111.6989 240809827 641611 300 13 421 32 0.0 Metagenome 3300025883 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - COGITO 998_met_11 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025883 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling No Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Pelagic marine 53.9944 6.8905 941047361 2128271 559 68 979 113 SRX2581073 Unrestricted 0.0 Metagenome 3300064813 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 680 in Bonnyville, Alberta, Canada - S00JY_0726 Microbiome Insights 3300064813 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 54.19361867 -110.4724417 47181886 72186 43 1 97 1 0.0 Metagenome 3300070427 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Mountain Lake Biological Station, Virginia, USA - MLBS_007-M-20180612-COMP-DNA1 3300070427 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 48401065 141640 72 10 146 14 0.0 Metagenome 3300007600 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1568A-3 DOE Joint Genome Institute (JGI) 3300007600 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2861 -123.7318 407921009 783849 380 90 526 146 SRX2753762 Unrestricted 0.0 Metagenome 3300042943 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-318 Genome Quebec 3300042943 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.876894 -119.313467 1261698010 2816509 496 188 795 298 0.0 Metagenome 3300047532 *Microbiome Permanent Draft Floating fern leaf microbial communities from various locations Floating fern leaf microbial communities from Loma Plata, Paraguay - 4069_IRRI DOE Joint Genome Institute (JGI) 3300047532 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dave.armitage@gmail.com David Armitage No Host-associated Plants Phylloplane/Leaf Phyllosphere Endophytes Leaf -22.372 -59.8296 21531335 23010 8 4 8 4 Unrestricted 1012.65 Metagenome 3300020345 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000427 (ERX556079-ERR599137) CEA Genoscope 3300020345 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -8.7006 -17.9915 291586954 778746 343 14 564 35 0.0 Metagenome 3300042751 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_21-May-14 NMDC pilot DOE Joint Genome Institute (JGI) 3300042751 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 73195189 173642 233 56 379 93 SRX2838982 0.0 Metagenome 3300042324 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME24May2013-rr0723 DOE Joint Genome Institute (JGI) 3300042324 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 556654088 912990 150 26 197 25 Unrestricted 22.16 Metagenome 3300000701 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 4 DOE Joint Genome Institute (JGI) 3300000701 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 9270690 28574 35 0 63 0 SRX4338205 Unrestricted 0.0 Metagenome 3300006105 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE07Jul09 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006105 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 266093467 681893 182 54 297 100 SRX2565219 Unrestricted 0.0 Metagenome 3300042063 *Microbiome Permanent Draft Deep-sea coral associated microbial communities from Gulf of Mexico, USA Deep-sea coral microbial communities from Gulf of Mexico, USA - 17110 AT357 T3-1 Ecosystem Impacts of Oil and Gas Inputs to the Gulf Consortium, The Pennsylvania State University 3300042063 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Invertebrates Coral Cnidaria Unclassified Deep-sea coral 27.587 -89.705 514986368 611077 4 13 10 71 SRX6911440 0.0 Metagenome 3300041821 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - TR_37_wk_4 DOE Joint Genome Institute (JGI) 3300041821 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9999 -107.084 75574817 222114 148 3 244 7 SRX14809594 Unrestricted 6.27 Metagenome 3300036827 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in California, United States - CAS_3 DOE Joint Genome Institute (JGI) 3300036827 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil 37.0 -122.2 2380269782 3772449 579 44 926 85 SRX8384333 Unrestricted 12.22 Metagenome 3300034116 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR DOE Joint Genome Institute (JGI) 3300034116 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1150832391 2351729 621 143 845 207 SRX7630699 Unrestricted 13.73 Metagenome 3300000077 *Microbiome Draft Wetland microbial communities from Twitchell Island in the Sacramento Delta Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site B1 Bulk v3 (version 3) DOE Joint Genome Institute (JGI) 3300000077 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes stringe@lbl.gov, sgtringe@lbl.gov Susannah Tringe Yes 25991679 Environmental Aquatic Wetlands Marine Sediment Wetland 38.10726 -121.648538 79467785 197107 320 5 619 9 Unrestricted 0.0 Metagenome 3300013424 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100153 University of Pennsylvania 3300013424 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9074930 23365 49 0 81 6 SRX756379 0.0 Metagenome 3300013859 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room gowning area microbial communities from NASA Jet Propulsion Laboratory, California, USA - Floor swab, replicate A SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300013859 Metagenome Analysis SPAdes 3.10.0 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1991 -118.1715 4265635 7330 6 0 2 2 Unrestricted 0.0 Metagenome 3300004870 *Microbiome Permanent Draft Deep marine subsurface microbial communities from Mid-Atlantic Ridge (IODP Expedition 336) Mid-Atlantic Ridge North Pond Expedition - Sample Bottom Water CTD 2012 The Marine Biological Laboratory 3300004870 Metagenome Analysis IDBA-UD v1.1.1 Released bc the datasets have been published No Yes tully.bj@gmail.com, tully.bj@gmail.com; jhuber@whoi.edu Benjamin Tully, Benjamin Tully; Julie Huber Yes 26935537 Environmental Aquatic Oceanic Marine Abyssal plane marine 22.78 -46.09 83984362 138235 82 16 119 23 0.0 Metagenome 3300007904 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 246515023 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007904 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 5021731 8503 5 0 6 0 0.0 Metagenome 3300008581 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158944319 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008581 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 123014965 184100 86 0 130 0 0.0 Metagenome 3300006059 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012 DOE Joint Genome Institute (JGI) 3300006059 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment watersheds 41.1752 -78.4168 4683963376 14770531 3020 134 5592 266 SRX2745727 Unrestricted 0.0 Metagenome 3300039207 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A10_65cm_6M University of Tennessee 3300039207 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 325545888 687986 147 5 316 6 SRX710601 0.0 Metagenome 3300003850 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz DOE Joint Genome Institute (JGI) 3300003850 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes avisel@lbl.gov, laila.partida@cinvestav.mx Axel Visel, Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.0936 -100.2988 53850251 130066 367 80 620 126 SRX2124701 Unrestricted 0.0 Metagenome 3300031681 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20 DOE Joint Genome Institute (JGI) 3300031681 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1906794966 4583168 701 12 1205 20 SRX5665951 Unrestricted 13.01 Metagenome 3300013242 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100614 University of Pennsylvania 3300013242 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 32499251 75617 30 4 38 8 SRX756480 0.0 Metagenome 3300046408 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA095b-BCH DOE Joint Genome Institute (JGI) 3300046408 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6792 -83.4776 493203664 1206006 360 27 654 51 Unrestricted 8.93 Metagenome 3300046687 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-C3 20-24 DOE Joint Genome Institute (JGI) 3300046687 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0435 607210144 966181 250 3 387 5 Restricted 12.86 Metagenome 3300014879 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_10D DOE Joint Genome Institute (JGI) 3300014879 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9232 -106.9513 265838818 608272 290 14 556 30 SRX3780227 Unrestricted 4.65 Metagenome 3300026888 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S2_10_20 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026888 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228379 -119.2717467 59637801 158697 175 13 316 26 SRX2523278 Unrestricted 0.0 Metagenome 3300025039 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-41 (SPAdes) DOE Joint Genome Institute (JGI) 3300025039 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 49.9984 -144.9944 95031594 155082 50 0 57 0 Unrestricted 0.0 Metagenome 3300028146 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK23 DOE Joint Genome Institute (JGI) 3300028146 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 247081782 607436 272 19 504 28 SRX5245476 Unrestricted 8.57 Metagenome 3300007224 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila melanogaster male 3 gut Cornell University 3300007224 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy Yes Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila melanogaster male adult gut 42.875296 -77.006403 432211359 472405 11 19 12 46 0.0 Metagenome 3300005361 *Microbiome Permanent Draft Hoatzin crop microbial communities from Cojedes, Venezuela Hoatzin crop microbial communities from Cojedes, Venezuela, sample from fiber fraction 14 v2 (version 2) DOE Joint Genome Institute (JGI) 3300005361 Metagenome Analysis Newbler and/or Velvet released based on JGI ITS No Yes sgtringe@lbl.gov, maria.dominguez1@upr.edu Susannah Tringe, Maria Gloria Dominguez-Bello No Host-associated Birds Esophagus Digestive system Crop Hoatzin crop 8.956944 -68.299167 109309014 181375 51 3 101 9 Unrestricted 0.0 Metagenome 3300001862 *Microbiome Permanent Draft Trichloroethene dechlorinating bioreactor microbial communities from Berkeley, California, USA Trichloroethene dechlorinating bioreactor microbial communities from Berkeley, California, USA - LACBS006D 3300001862 Metagenome Analysis released by JGI data releasing policy No Yes benstenuit@gmail.com Benoit stenuit, Ben A. Stenuit No Engineered Bioremediation Chloroethene Tetrachloroethylene and derivatives Bioreactor Trichloroethene dechlorinating bioreactor 37.87 -122.26 42372597 75719 0 0 0 0 0.0 Metagenome 3300046669 *Microbiome Permanent Draft Soil microbial communities from Blodgett Forest Research Station, California, USA Soil microbial communities from Blodgett Forest Research Station, California, USA - BWE201412022C1020 DOE Joint Genome Institute (JGI) 3300046669 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.9122 -120.6612 106055521 198127 185 37 374 51 Unrestricted 16.91 Metagenome 3300040975 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A20_65cm_0M University of Tennessee 3300040975 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 92318390 209930 75 0 176 0 SRX710556 0.0 Metagenome 3300000598 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 29MAY2008 epilimnion DOE Joint Genome Institute (JGI) 3300000598 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300041428 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass leaf microbial community from Lincoln, Canterbury, New Zealand - RGL17_6 MetaG AgResearch, New Zealand, Mosgeil 3300041428 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 402811759 618940 39 1066 72 1119 0.0 Metagenome 3300032390 *Microbiome Permanent Draft Understanding the reciprocal impacts of modified plant cell wall and associated microbiome Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R1 DOE Joint Genome Institute (JGI) 3300032390 Metagenome Analysis spades v. 3.13.0 Yes Yes kalluriudayc@ornl.gov Udaya C. Kalluri No Host-associated Plants Stem Phyllosphere Wood/Secondary xylem xylem 32.1348 -81.9657 479967329 451997 41 54 53 59 SRX6871343 Unrestricted 132.94 Metagenome 3300001570 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP2016 DOE Joint Genome Institute (JGI) 3300001570 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 18.04 -133.26 28067177 74334 55 4 102 8 SRX1982298 Unrestricted 0.0 Metagenome 3300038670 *Microbiome Finished Marine algae associated bacterial community from Sydney, Australia Marine algae associated bacterial community from Sydney, Australia - Ulva australis_2R4 Ramaciotti Centre for Genomics 3300038670 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes j.nappi@unsw.edu.au Jadranka Nappi No Host-associated Algae Unclassified Unclassified Unclassified Marine -33.990304 151.231529 509494842 736067 78 11 172 15 0.0 Metagenome 3300042511 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME23Apr2002-rr0706 DOE Joint Genome Institute (JGI) 3300042511 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 652880266 1062807 234 68 307 93 Unrestricted 25.12 Metagenome 3300053122 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere DOE Joint Genome Institute (JGI) 3300053122 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 46.121531 -123.271207 626149214 1002245 246 99 363 118 Unrestricted 11.69 Metagenome 3300029898 *Microbiome Permanent Draft Cryoconite microbial communities around the Greenland ice sheet Cryoconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_U-A1b DMAC, Technical University of Denmark 3300029898 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Ice Freshwater Cryoconite Cryconite 65.41 -38.51 188451592 336873 93 6 149 12 SRX2579836 0.0 Metagenome 3300011441 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT513_2 DOE Joint Genome Institute (JGI) 3300011441 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9779 -107.0031 533679527 1172656 371 35 752 47 SRX3539343 Unrestricted 0.0 Metagenome 3300025993 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_404 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025993 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 66088866 168766 151 3 241 5 SRX2564778, SRX2581042 Unrestricted 0.0 Metagenome 3300042837 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152 NMDC pilot DOE Joint Genome Institute (JGI) 3300042837 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92057636 -106.94874802 740579760 1880316 547 17 952 29 SRX5354687 0.0 Metagenome 3300011579 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01073 Weill Cornell Medical College 3300011579 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.8 -73.94 23547130 37282 18 0 23 0 SRX823028 0.0 Metagenome 3300037108 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 C-2-M DOE Joint Genome Institute (JGI) 3300037108 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3544 19.048 766103624 1420536 359 8 593 17 SRX8162374 Unrestricted 10.53 Metagenome 3300049901 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume viral communities from Gulf of California, Mexico - CTD-FK190211-008-700m-0.03 v DOE Joint Genome Institute (JGI) 3300049901 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 27.58323 -111.4645 261795268 675004 55 7 87 19 Restricted 116.74 Metagenome 3300051212 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lower Colorado River, Austin, Texas, USA - lowercolorado_2019_sw_WHONDRS-S19S_0063 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300051212 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 30.2502 -97.7095 447497665 721218 223 94 369 150 Unrestricted 0.0 Metagenome 3300039683 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA Corn field soil microbial communities from Boone County, Iowa, USA - CC35-LM-July2012 Iowa State University 3300039683 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land Corn field soil 42.01375 -93.783837 51940383 163974 117 16 276 26 0.0 Metagenome 3300046344 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_123 DOE Joint Genome Institute (JGI) 3300046344 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9223 -106.9493 101133659 337292 451 86 909 118 Restricted 0.0 Metagenome 3300025152 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection C2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025152 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.534762 -107.782602 736356823 1281304 782 9 1237 11 SRX1990986 Unrestricted 0.0 Metagenome 3300043599 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 129-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043599 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9396 -107.0137 340089061 922955 419 27 747 34 Unrestricted 7.81 Metagenome 3300001797 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP-81 DOE Joint Genome Institute (JGI) 3300001797 Metagenome Analysis Yes Yes mbsulli@gmail.com, sacinas@icm.csic.es; mbsulli@gmail.com Matthew Sullivan, Silvia G. Acinas; Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -28.4105 179.1447 43840580 104763 46 1 85 2 SRX4915166 Unrestricted 0.0 Metagenome 3300005190 *Microbiome Permanent Draft Mallorca 2014 E2 E2 T-1 University of Alicante 3300005190 Metagenome Analysis IDBA 1.1.1 PRE correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline 39.338015 3.051796 31515995 82525 11 0 8 0 0.0 Metagenome 3300069324 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_006-O-20170717-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069324 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 12806696 38763 67 11 116 26 0.0 Metagenome 3300037784 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - ARW7_20151027 DOE Joint Genome Institute (JGI) 3300037784 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 300728588 439031 149 7 203 7 SRX9140277 Unrestricted 48.1 Metagenome 3300047505 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2014 MH-D_10cm DOE Joint Genome Institute (JGI) 3300047505 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.2129 19.0232 42269457 82533 45 0 85 0 Restricted 102.92 Metagenome 3300006132 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t1_693M_control - microbial_metagenome University of Texas Southwestern Medical Center 3300006132 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 199066613 355155 248 0 279 0 0.0 Metagenome 3300015199 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Storglaciaren, Tarfala, Sweden (Sample st-2c, rock/snow interface) University of Bristol 3300015199 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.899244 18.344371 6.4 290006175 580214 197 8 345 9 0.0 Metagenome 3300054062 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_19_40 re-annotation DOE Joint Genome Institute (JGI) 3300054062 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 436060878 865928 203 7 370 9 SRX3005978 0.0 Metagenome 3300027175 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius geniculatus LIZARD ISLAND (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027175 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 412433069 414109 10 2 14 4 SRX3340730 Unrestricted 0.0 Metagenome 3300012808 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - DID2933_E24_Xylan MG DOE Joint Genome Institute (JGI) 3300012808 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie Yes 29545786 Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 70611347 89703 86 0 99 0 SRX3564846 Unrestricted 0.0 Metagenome 3300025281 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP-97 (SPAdes) DOE Joint Genome Institute (JGI) 3300025281 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es; mbsulli@gmail.com Silvia G. Acinas; Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 9.2013 -163.4956 161893122 323886 90 2 146 1 SRX4915162 Unrestricted 0.0 Metagenome 3300004688 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE06Aug07 (version 2) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300004688 Metagenome Analysis MEGAHIT v0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 67470205 239718 70 58 129 221 SRX2565197 Unrestricted 0.0 Metagenome 3300029874 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37753 Beijing Genomics Institute (BGI) 3300029874 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 202328741 272057 161 0 247 0 0.0 Metagenome 3300044566 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TST4 DOE Joint Genome Institute (JGI) 3300044566 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.414 82310325 107824 129 1 130 3 SRX12686847 Unrestricted 124.96 Metagenome 3300047446 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere DOE Joint Genome Institute (JGI) 3300047446 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5878 -123.1926 308621740 459514 140 20 245 40 Unrestricted 33.56 Metagenome 3300026670 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1111 (SPAdes) DOE Joint Genome Institute (JGI) 3300026670 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 8870003 24063 44 3 78 4 SRX3311886 Unrestricted 0.0 Metagenome 3300043113 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B6.2_Sample6.Rodeo2.Well1132 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043113 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 207899629 378091 210 0 356 0 SRX8356078 Unrestricted 41.31 Metagenome 3300000574 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m DOE Joint Genome Institute (JGI) 3300000574 Metagenome Analysis Yes Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.292222 -73.604444 568039809 1250031 550 24 894 52 SRX3307785 Unrestricted 0.0 Metagenome 3300014102 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Vietnam to Iowa, USA - VN5 Iowa State University 3300014102 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 10138135 19224 0 1 0 0 SRX1150320 0.0 Metagenome 3300003463 *Microbiome Permanent Draft Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil, in a copper mine Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P1 sample University of Campinas 3300003463 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes danba.castro@gmail.com Daniel Castro No Environmental Terrestrial Unclassified Soil Unclassified Ore pile and mine drainage contaminated soil -6.426389 -50.051389 240569980 340918 96 0 167 0 0.0 Metagenome 3300025330 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE12Jun07 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025330 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 18987744 49186 27 12 59 46 SRX2565202 Unrestricted 0.0 Metagenome 3300040287 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_046-M-31-3-20140716-GEN-DNA1 Argonne National Laboratory 3300040287 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 10387672 26141 20 0 31 0 0.0 Metagenome 3300005326 *Microbiome Permanent Draft Bioremediated contaminated groundwater microbial communities from North Railroad Avenue plume (NRAP), New Mexico Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample HSE6-23 DOE Joint Genome Institute (JGI) 3300005326 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, NNIvanova@lbl.gov; rebecca.reiss@nmt.edu Natasha Ivanova, Natalia Ivanova; Rebecca Reiss Yes 27980706 Environmental Aquatic Groundwater Deep subsurface Contaminated Bioremediated contaminated groundwater 35.9918 -106.0796 493037024 733687 617 4 899 3 SRX2554407 0.0 Metagenome 3300007536 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_C_black_MG DOE Joint Genome Institute (JGI) 3300007536 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4958 -122.1331 667979717 1201308 700 20 1142 30 SRX2523666 Unrestricted 0.0 Metagenome 3300038998 *Microbiome Permanent Draft Paddy soil microbial communities from Vercelli, Italy Paddy soil microbial communities from Vercelli, Italy - timepoint2 Max Planck Institute for Terrestrial Microbiology 3300038998 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes bei@mpi-marburg.mpg.de Qicheng Bei No Environmental Terrestrial Paddy field/soil Soil Unclassified Paddy soil 45.3241611 8.37385833 609507950 875049 95 10 153 10 0.0 Metagenome 3300049266 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA9 DOE Joint Genome Institute (JGI) 3300049266 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 360000883 857621 341 1 632 0 Unrestricted 6.84 Metagenome 3300038481 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18B_6_14_9 mgh University of Alberta 3300038481 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 32159497 40013 14 0 23 0 0.0 Metagenome 7000000529 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 160603188 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000529 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 4954890 9214 0 0 0 0 SRX022963, SRX022962 0.0 Metagenome 3300010377 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 1 OAHU.JWI-13 metaG DOE Joint Genome Institute (JGI) 3300010377 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms 21.2608 -157.7866 746975331 1054906 18 24 23 31 SRX2525632 Unrestricted 0.0 Metagenome 3300027520 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius clavatus LIZARD ISLAND.2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027520 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 519349637 563502 4 3 5 15 SRX2712175 Unrestricted 0.0 Metagenome 3300026974 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-E (SPAdes) DOE Joint Genome Institute (JGI) 3300026974 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.56 -89.32 9161460 29065 54 4 80 7 SRX1991334 Unrestricted 0.0 Metagenome 3300006350 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0075m University of Hawaii 3300006350 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 455920668 1002634 425 31 598 63 0.0 Metagenome 3300069511 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_048-O-20170621-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069511 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 158727628 370246 104 37 205 65 0.0 Metagenome 3300065579 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 769 in Veteran, Alberta, Canada - S00JY_0297 Microbiome Insights 3300065579 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.01390508 -111.1006914 157384379 233206 60 3 127 2 0.0 Metagenome 3300034004 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 22HNC DOE Joint Genome Institute (JGI) 3300034004 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological hypolithic biocrust 34.3778 -117.6098 243210939 562077 486 48 829 71 SRX7615823 Unrestricted 9.89 Metagenome 3300045928 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P15SSC1_190912_c DOE Joint Genome Institute (JGI) 3300045928 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 754985058 1248106 254 2 408 3 SRX20650988 Unrestricted 12.48 Metagenome 3300020012 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - U1s1 DOE Joint Genome Institute (JGI) 3300020012 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9223 -106.9536 169073408 380033 203 15 399 25 SRX3958557, SRX3958556 Unrestricted 0.0 Metagenome 3300031470 *Microbiome Permanent Draft Rock endolithic microbial communities from Victoria Land, Antarctica Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord DOE Joint Genome Institute (JGI) 3300031470 Metagenome Analysis spades v. 3.12.0 Yes Yes selbmann@unitus.it Laura Selbmann Yes 32139564 Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock -77.9 160.7 780439653 1229919 119 29 126 36 SRX5225339 Unrestricted 37.59 Metagenome 3300049823 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 DOE Joint Genome Institute (JGI) 3300049823 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.40849 -82.168434 2134828331 3283248 737 63 1123 94 Unrestricted 17.72 Metagenome 3300030498 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - Or.Ma.e (v2) (version 2) DOE Joint Genome Institute (JGI) 3300030498 Metagenome Analysis spades v. 3.12.0 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.0936 -100.2988 1080334363 1942137 443 164 781 326 SRX2483315, SRX2483314 Unrestricted 0.0 Metagenome 3300027839 *Microbiome Permanent Draft Marine microbial communities from western Arctic Ocean Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027839 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh Yes 30271971 Environmental Aquatic Oceanic Marine Unclassified Marine 79.2466 -150.0613 1405310221 2781555 996 130 1411 221 SRX2997513 Unrestricted 0.0 Metagenome 3300015061 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G5B, Northern proglacial tributary margin, adjacent to top of river) University of Bristol 3300015061 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.156461 -50.083665 5.91 22184640 48779 49 4 71 5 0.0 Metagenome 3300021493 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-3-4_MG DOE Joint Genome Institute (JGI) 3300021493 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.0114 -110.5931 144589974 293536 135 3 207 4 SRX3982111 Unrestricted 31.6 Metagenome 3300032099 *Microbiome Permanent Draft Microbial communities from the deep biosphere Freshwater microbial communities from subglacial Lake Whillans, West Antarctica - SLW_0_2cm re-assembly The Marine Biological Laboratory 3300032099 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Subglacial lake Freshwater Unclassified Freshwater -84.267 -153.209 150023548 487009 194 3 402 1 SRX2064687 0.0 Metagenome 3300045208 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_4_B DOE Joint Genome Institute (JGI) 3300045208 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 180749702 216384 100 1 122 1 Unrestricted 94.87 Metagenome 3300040269 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_003-M-20160720-COMP-DNA1 Battelle Memorial Institute 3300040269 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 7590243 21492 20 4 42 4 0.0 Metagenome 3300034180 *Microbiome Permanent Draft Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China - SA3 Sun Yat-Sen University 3300034180 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy No Yes yuxiaoli92@163.com Xiaoli Yu No Environmental Aquatic Intertidal zone Marine Mangrove sediment mangrove sediment 23.45 116.43 469780350 1080937 375 36 799 77 0.0 Metagenome 3300028827 *Microbiome Permanent Draft Axial Seamount Reassemblies Marine deep subsurface microbial communities from hydrothermal vents in Axial Seamount, Pacific Ocean - FS900_Dependable_DNA IDBA_UD reassembly The Marine Biological Laboratory 3300028827 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Marine deep subsurface 45.87992 -129.80294 511963681 1150313 811 12 1254 33 0.0 Metagenome 3300017826 *Microbiome Permanent Draft Archevir - Metagenome and diversity of hyperhalophilic archaeoviruses Saline water viral communities from hypersaline Lake Retba, Senegal - P6 GATC-Biotech AG, Konstanz, Germany 3300017826 Metagenome Analysis Idba_ud No Yes sroux@lbl.gov Simon Roux Yes 26472517 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified saline water 14.8388 -17.2341 2151441 4679 0 0 0 0 0.0 Metagenome 3300029382 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 075_4_29_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029382 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 313819163 465187 374 3 584 5 0.0 Metagenome 3300038378 *Microbiome Permanent Draft Diffuse flow microbial communities from hydrothermal vent near Loihi Seamount, Hawaii, USA Diffuse flow microbial communities from hydrothermal vent near Loihi Seamount, Hawaii, USA - 71 The Marine Biological Laboratory 3300038378 Metagenome Analysis IDBA-UD v. 1.1.3 released by JGI data releasing policy No Yes asmith@simons-rock.edu Amy Smith No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse Flow 18.92 -155.27 5-6 37151691 53159 75 6 93 7 0.0 Metagenome 3300022330 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Garden Lake, Rottnest Island (WA - Australia) - GL1GP2 JM44 AGRF 3300022330 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.995604 115.536873 27091524 51699 25 0 44 0 0.0 Metagenome 3300014523 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 9_4M Beijing Genomics Institute (BGI) 3300014523 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 48185167 64281 26 0 26 0 ERX491320 0.0 Metagenome 3300038633 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes in Niagara, Canada Freshwater lake microbial communities from the Great Lakes in Niagara, Canada - LB-3W-Aug9-2012 McMaster University 3300038633 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 42.8698 -79.3981 3121805 7762 18 0 39 1 0.0 Metagenome 3300002326 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP13-I4 3300002326 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300010997 *Microbiome Permanent Draft CWC Coastal Marshes ECM15MPS05_Aassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method A (2X250bp) Molecular Research LP (MR DNA) 3300010997 Metagenome Analysis SPAdes 3.9.0 released by JGI data releasing policy No Yes aengel1@utk.edu Annette Engel No Environmental Aquatic Wetlands Freshwater Sediment sediment 29.45083 -89.75005 149684896 259814 98 10 147 11 0.0 Metagenome 3300024451 *Microbiome Permanent Draft Vaginal microbial communities from lab mice Vaginal microbial communities from healthy lab mice, Madrid, Spain - G2-S16 treatment B1, day 20 Polytechnic University of Valencia 3300024451 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Vagina Reproductive system Unclassified mice vagina 40.4191094 -3.6725753 810642 1264 1 0 1 0 0.0 Metagenome 3300011266 *Microbiome Permanent Draft Acid mine drainage microbial communities from Malanjkhand copper mine, India Acid mine drainage microbial communities from Malanjkhand copper mine, India - M16 k-mer 55 Xcelris labs Ltd 3300011266 Metagenome Analysis Metavelvet released by JGI data releasing policy No Yes psar@hijli.iitkgp.ernet.in Pinaki Sar No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage sediment 22.023017 80.732183 263997598 706706 583 77 837 117 0.0 Metagenome 3300024260 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_135_MG DOE Joint Genome Institute (JGI) 3300024260 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca; shallam@interchange.ubc.ca Sean Crowe; Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5847 -123.5008 551774819 1010474 445 8 652 11 SRX4488182 Unrestricted 54.55 Metagenome 3300003795 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH11Jul08 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003795 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 33494381 80801 70 11 153 18 SRX2565400 Unrestricted 0.0 Metagenome 3300034002 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 16HMC DOE Joint Genome Institute (JGI) 3300034002 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological hypolithic biocrust 34.3778 -117.6098 215453156 483083 377 38 701 54 SRX7615731 Unrestricted 7.05 Metagenome 3300048029 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_180112.NP2 DOE Joint Genome Institute (JGI) 3300048029 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 676736346 1406862 468 74 684 138 Unrestricted 14.96 Metagenome 3300017700 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.D.D DOE Joint Genome Institute (JGI) 3300017700 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 81150996 201496 5 5 8 9 SRX7205046 Unrestricted 132.68 Metagenome 7000000271 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 508703490 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000271 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 106588434 166623 0 0 0 0 0.0 Metagenome 3300001533 *Microbiome Permanent Draft Benthic freshwater sediment microbial communities from British Columbia, Canada Benthic freshwater microbial communities from British Columbia, Canada 3300001533 Metagenome Analysis IDBA released by JGI data releasing policy No Yes tlh42@psu.edu Trinity No Environmental Aquatic Lake Freshwater Sediment Benthic 49.283333 -119.583333 7 781428736 1284383 391 8 700 22 0.0 Metagenome 3300039838 *Microbiome Permanent Draft Glacier soil microbial communities from Mackay Glacier, Antarctica Glacier soil microbial communities from Mackay Glacier, Antarctica - MS3-5 University of Pretoria 3300039838 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Terrestrial Glacier Soil Unclassified Glacier soil -77.018 161.739 27853151 53029 15 0 11 0 0.0 Metagenome 3300026972 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and M2 (3) (SPAdes) DOE Joint Genome Institute (JGI) 3300026972 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 71642463 101996 37 0 46 0 SRX3311620 Unrestricted 0.0 Metagenome 3300042928 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-328 Genome Quebec 3300042928 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.621082 -120.049718 809715258 1775021 263 35 394 60 0.0 Metagenome 3300027496 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027496 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 228033280 580743 289 154 511 244 SRX1985648, SRX1985647 Unrestricted 0.0 Metagenome 3300007935 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159611913 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007935 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 128044 348 2 0 6 1 0.0 Metagenome 3300070776 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_006-M-20130726-COMP-DNA1 3300070776 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 2469743 7964 23 1 40 6 0.0 Metagenome 3300070931 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_003-M-20171114-COMP-DNA1 3300070931 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 57710410 168085 108 4 240 10 0.0 Metagenome 3300011823 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00544 Weill Cornell Medical College 3300011823 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.67 -73.9 36947354 60998 23 0 36 0 SRX822511 0.0 Metagenome 3300012061 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Florida, USA - TSFL089 MetaG DOE Joint Genome Institute (JGI) 3300012061 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 30.4649 -84.3641 50099514 80956 43 52 74 108 SRX3539731 Unrestricted 0.0 Metagenome 3300028150 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_28AUG2017_LD1 DOE Joint Genome Institute (JGI) 3300028150 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 54778475 114427 45 54 67 74 SRX5345911 Unrestricted 19.78 Metagenome 3300004833 *Microbiome Permanent Draft Deep marine subsurface microbial communities from Mid-Atlantic Ridge (IODP Expedition 336) Aquifer microbial communities from Mid-Atlantic Ridge, Atlantic Ocean - 1383C Deep The Marine Biological Laboratory 3300004833 Metagenome Analysis IDBA-UD v1.1.1 Released bc the datasets have been published No Yes tully.bj@gmail.com, tully.bj@gmail.com; lmseyler@gmail.com Benjamin Tully, Benjamin Tully; Lauren Seyler Yes 26935537 Environmental Aquatic Aquifer Marine Formation fluid marine subseafloor aquifer 22.8 -46.05 58462782 87850 64 23 95 33 0.0 Metagenome 3300035099 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL18G_03-A DOE Joint Genome Institute (JGI) 3300035099 Metagenome Analysis metaspades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5106 -110.3566 904197735 1654038 685 7 1048 12 SRX8273731 Unrestricted 46.06 Metagenome 3300042208 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D56_1 DOE Joint Genome Institute (JGI) 3300042208 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 196736308 300749 128 9 194 11 Unrestricted 62.76 Metagenome 3300021272 *Microbiome Permanent Draft Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States - Hamp_Shaw_2 DOE Joint Genome Institute (JGI) 3300021272 Metagenome Analysis spades v. 3.11.1-check Yes Yes zachary.freedman@mail.wvu.edu Zachary Freedman No Environmental Terrestrial Surface mine Soil Reclaimed soil 39.458 -79.073 20412757 61679 85 12 164 17 SRX4030464 Unrestricted 6.59 Metagenome 3300000258 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_J_09_P20_1000 DOE Joint Genome Institute (JGI) 3300000258 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 48.35 -123.3 92615039 236870 101 34 189 57 Unrestricted 0.0 Metagenome 3300029384 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 091_5_1_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029384 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 216567795 291151 189 0 266 0 0.0 Metagenome 3300003846 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - Mg.Sf.rz DOE Joint Genome Institute (JGI) 3300003846 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes avisel@lbl.gov, laila.partida@cinvestav.mx Axel Visel, Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.7658 -100.163 179467997 342090 311 24 459 43 SRX2124705 Unrestricted 0.0 Metagenome 3300012941 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015 Shell Corporation 3300012941 Metagenome Analysis idba_ud released by JGI data releasing policy No Yes nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis No Environmental Terrestrial Ranch Soil Agricultural land soil 52.172047 -113.738964 2874749251 11876964 1493 71 2709 155 0.0 Metagenome 3300071129 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_008-M-20190715-COMP-DNA1 3300071129 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 1121535 3887 15 6 34 5 0.0 Metagenome 3300046342 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_120 DOE Joint Genome Institute (JGI) 3300046342 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9236 -106.9499 78815426 251311 487 77 981 115 Restricted 0.0 Metagenome 3300025154 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado, USA - Groundwater F2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025154 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 26083755 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.53 -107.78 785025171 1259124 601 14 976 20 SRX1668462, SRX764834 Unrestricted 0.0 Metagenome 3300069403 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_042-M-20170627-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069403 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 74032172 202768 122 5 229 17 0.0 Metagenome 3300035161 *Microbiome Permanent Draft Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China - KO5 Sun Yat-Sen University 3300035161 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy No Yes yuxiaoli92@163.com Xiaoli Yu No Environmental Aquatic Intertidal zone Marine Mangrove sediment mangrove sediment 23.45 116.43 567370663 1330509 427 10 879 21 0.0 Metagenome 3300044918 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_6_E DOE Joint Genome Institute (JGI) 3300044918 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 204389339 235199 128 1 141 1 Unrestricted 95.2 Metagenome 3300004089 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls C (FF_Mn_C) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300004089 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Lotic Freshwater Unclassified Freshwater 44.376 -110.69 132328296 364295 161 1 289 3 SRX2577196, SRX2577195 Unrestricted 0.0 Metagenome 3300056686 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.3W.13 SIP fraction DOE Joint Genome Institute (JGI) 3300056686 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 150965294 265586 133 5 158 13 Unrestricted 20.77 Metagenome 3300021086 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300021086 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 1260209343 2884791 546 109 1082 163 SRX4809087 Unrestricted 17.79 Metagenome 3300043677 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 403-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043677 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9759 -107.0633 659450045 1761261 590 26 1114 47 Unrestricted 7.62 Metagenome 2027040003 *Microbiome Permanent Draft Wastewater viral communities from wastewater treatment facility in Singapore Viral communities in wastewater treatment process (AS-no assmebly) University of Illinois, Urbana-Champaign 2027040003 Metagenome Analysis not assembled released per JGI data release policy No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Activated sludge Wastewater 1.332 103.756 134666693 285287 16 0 27 0 0.0 Metagenome 3300031238 *Microbiome Permanent Draft Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG DOE Joint Genome Institute (JGI) 3300031238 Metagenome Analysis spades v. 3.12.0 Yes Yes rbneum@uw.edu Rebecca Neumann No Host-associated Plants Rhizosphere Roots Soil rhizosphere 47.6516 -122.3045 1066203728 2494792 806 7 1283 14 SRX5346109 Unrestricted 8.37 Metagenome 3300002190 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 day 00 University of Sao Paulo, Virginia Bioinformatics Institute 3300002190 Metagenome Analysis SoapDeNovo released per JGI data release policy No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal No Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 33284699 92602 4 4 16 7 0.0 Metagenome 3300020233 *Microbiome Permanent Draft Black smoker hydrothermal vent sediment microbial communities from the Guaymas Basin, Mid-Atlantic Ridge, South Atlantic Ocean Black smoker hydrothermal vent sediment microbial communities from the Guaymas Basin, Mid-Atlantic Ridge, South Atlantic Ocean - Sample 1 Archaea reference mapping and reassemble Beijing Genomics Institute (BGI) 3300020233 Metagenome Analysis idba_ud 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Hydrothermal vents Marine Black smokers hydrothermal vents -15.160005 -13.350021 93479897 168239 578 2 722 3 0.0 Metagenome 3300014080 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Venezuela to Iowa, USA - V9 Iowa State University 3300014080 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 2276553 4321 0 3 0 1 SRX1150314 0.0 Metagenome 3300006134 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t1_690M_inflammed - microbial_metagenome University of Texas Southwestern Medical Center 3300006134 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 169378618 306107 169 0 221 0 0.0 Metagenome 3300038779 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog46 BILS 3300038779 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 2241586 6154 7 1 6 1 ERX1594868 0.0 Metagenome 3300054064 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_20_150 re-annotation DOE Joint Genome Institute (JGI) 3300054064 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 313188270 621254 205 10 364 10 SRX3006110 0.0 Metagenome 3300044657 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Estuarine water microbial communities from San Francisco Bay, California, United States - Feb19_FB_7_27D DOE Joint Genome Institute (JGI) 3300044657 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 37.6183 -122.2916 705565766 1160858 280 122 480 191 Unrestricted 30.66 Metagenome 3300069322 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_016-M-20130731-COMP-DNA1 re-annotation Argonne National Laboratory 3300069322 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 5313920 17251 43 10 94 15 0.0 Metagenome 3300019866 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - H1m1 DOE Joint Genome Institute (JGI) 3300019866 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9765 -107.0043 102947419 245779 215 13 428 12 SRX3959605, SRX3959604 Unrestricted 0.0 Metagenome 3300037782 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - ARW9_20151111 DOE Joint Genome Institute (JGI) 3300037782 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 281164705 443783 144 17 222 24 SRX9140174 Unrestricted 29.34 Metagenome 3300012199 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG DOE Joint Genome Institute (JGI) 3300012199 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.5673 -123.4758 2042177117 4124071 1329 56 2314 110 SRX3372897 Unrestricted 0.0 Metagenome 3300044965 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - CSA1D DOE Joint Genome Institute (JGI) 3300044965 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 1252416475 2264678 638 38 1180 50 Unrestricted 16.75 Metagenome 3300055499 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.1C.8 SIP fraction DOE Joint Genome Institute (JGI) 3300055499 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 133850289 244085 48 0 84 0 Unrestricted 25.22 Metagenome 3300036938 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8WT15 DOE Joint Genome Institute (JGI) 3300036938 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 621879309 1647287 631 33 1161 52 SRX8379806 Unrestricted 5.1 Metagenome 3300041443 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG AgResearch, New Zealand, Mosgeil 3300041443 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Rhizoplane Roots Dairy farm pasture -43.648506 172.343549 743028537 1744469 211 28 658 97 0.0 Metagenome 3300029872 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37584 Beijing Genomics Institute (BGI) 3300029872 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 187637241 229394 146 0 190 0 0.0 Metagenome 3300012513 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.old.250510 DOE Joint Genome Institute (JGI) 3300012513 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 185499732 476382 351 41 736 72 SRX3527421 Unrestricted 0.0 Metagenome 3300059696 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059696 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 242536995 535285 196 12 283 14 SRX2753582 Unrestricted 0.0 Metagenome 3300029560 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI022001-62 Beijing Genomics Institute (BGI) 3300029560 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 180606507 223866 118 0 183 0 0.0 Metagenome 3300050210 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water microbial communities from Sandhills, Nebraska, United States - NSL_Bean_2018_MMG DOE Joint Genome Institute (JGI) 3300050210 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.7748 -102.5295 2086183059 3299059 682 24 1011 30 Unrestricted 21.05 Metagenome 3300021319 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen10, Rep 3 DOE Joint Genome Institute (JGI) 3300021319 Metagenome Analysis spades v. 3.11.1-check Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4149 -119.841 239055765 291593 332 1 387 1 SRX4038383 Unrestricted 94.13 Metagenome 3300000860 *Microbiome Permanent Draft Freshwater and marine microbial communities from the Columbia River, USA, of estuaries and plumes across salinity gradients Marine microbial communities from the coastal margin of the Columbia River, USA - metatranscriptome 33 PSU, 16m University of Maryland 3300000860 Metagenome Analysis released per PI's request No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato Yes 26536246 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Freshwater and marine 46.233 -124.16 9628445 23293 579 310 1597 1053 0.0 Metagenome 3300014104 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_010 The George Washington University (GWU) 3300014104 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 20133404 44069 21 9 28 12 SRX656261 0.0 Metagenome 3300004067 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqA_D2 DOE Joint Genome Institute (JGI) 3300004067 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.209766 -122.033424 832626078 2677553 1034 10 2213 15 SRX7142961 Unrestricted 0.0 Metagenome 3300021558 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Upa-Upasina ""control"", co6ic19 200bp no Eukaryotes last" University of New South Wales 3300021558 Metagenome Analysis IDBA-UD released by Emmanuelle BOTTE Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified C. singaporensis (marine sponge) -9.828217 150.820517 129191742 233429 75 1 125 1 0.0 Metagenome 3300007902 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 159753524 replicate 1 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007902 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 2243272 6420 5 0 8 2 SRX023395 0.0 Metagenome 3300020438 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942) CEA Genoscope 3300020438 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 35.4118 -127.7122 1387323459 3254223 478 63 834 125 0.0 Metagenome 3300040576 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_026-M-20170605-COMP-DNA1 Battelle Memorial Institute 3300040576 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 2097424 6386 9 0 13 0 0.0 Metagenome 3300029109 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human oral microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002637-96 Beijing Genomics Institute (BGI) 3300029109 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Dental plaque Host-associated 39.911947 116.4156125 94168894 124516 83 0 132 0 ERX547475 0.0 Metagenome 3300012026 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #138 DOE Joint Genome Institute (JGI) 3300012026 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 65743123 140344 50 1 76 1 SRX3296161 Unrestricted 0.0 Metagenome 3300013422 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100154 University of Pennsylvania 3300013422 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9115025 14032 16 0 9 0 SRX756378 0.0 Metagenome 3300026779 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2w-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300026779 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 19861161 63738 103 3 189 3 SRX1991148 Unrestricted 0.0 Metagenome 3300069208 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Chase Lake Wetlands, North Dakota, USA - WOOD_043-M-20210712-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069208 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 47.131002 -99.242763 2802353118 6391054 1622 37 3062 54 0.0 Metagenome 3300046015 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Para, Brazil - P13 DOE Joint Genome Institute (JGI) 3300046015 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Pasture Soil Agricultural land Soil -3.2942 -54.8514 451421516 1039900 264 7 453 6 Restricted 0.0 Metagenome 3300001217 *Microbiome Permanent Draft Switchgrass rhizosphere microbial communities from Knoxville, Tennessee, USA Switchgrass Microbiome Oak Ridge National Laboratory 3300001217 Metagenome Analysis Metavelvet released per JGI data release policy No Yes sutturka@utk.edu, sutturka@vols.utk.edu SAGAR UTTURKAR, sagar Utturkar No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 15030841 84911 74 6 189 6 0.0 Metagenome 3300007222 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 706846339 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007222 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 211029577 267460 189 0 269 0 0.0 Metagenome 3300033805 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10 DOE Joint Genome Institute (JGI) 3300033805 Metagenome Analysis spades v. 3.13.0 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Unclassified peatland -6.3272 -74.8136 521444388 1425709 505 12 902 12 SRX7525174 Unrestricted 6.73 Metagenome 3300003127 *Microbiome Permanent Draft Acid mine drainage microbial communities from Los Rueldos abandoned Hg mine in Spain Acid mine drainage microbial communities from Los Rueldos abandoned Hg mine in Spain - Sample B1B Institute of Catalysis, The Higher Council for Scientific Research (CSIC) 3300003127 Metagenome Analysis Made public because these are downloaded from Genbank No Yes mferrer@icp.csic.es Manuel Ferrer Yes 24430486 Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 43.25 -5.7666667 14901674 24340 13 0 10 0 0.0 Metagenome 3300013244 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100267 University of Pennsylvania 3300013244 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 37697357 80868 31 1 56 4 SRX756634 0.0 Metagenome 3300014788 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS56_0 University of Hohenheim 3300014788 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 127714903 197773 89 0 129 1 0.0 Metagenome 3300002361 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 30NOV2011 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002361 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 29513307 71446 69 11 107 22 SRX1989733 Unrestricted 0.0 Metagenome 3300013111 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 295m, 250-2.7um, replicate b Georgia Genomics Facility 3300013111 Metagenome Analysis IDBA 1.1.1 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 277888898 327105 99 14 139 16 0.0 Metagenome 3300054567 *Microbiome Permanent Draft Soil microbial communities from pasture in Hopland Research and Extension Center, CA, USA Soil viral communities from pasture in Hopland Research and Extension Center, CA, USA - T2-H2O-C library kit 1SPlus DOE Joint Genome Institute (JGI) 3300054567 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes trubl1@llnl.gov Gareth Trubl No Environmental Terrestrial Pasture Soil Unclassified Soil 39.00177 -123.06967 84776356 221687 79 4 133 5 Unrestricted 204.65 Metagenome 3300006658 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T10 (1) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006658 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 51134131 100727 63 0 106 1 0.0 Metagenome 3300001864 *Microbiome Permanent Draft Trichloroethene dechlorinating bioreactor microbial communities from Berkeley, California, USA Trichloroethene dechlorinating bioreactor microbial communities from Berkeley, California, USA - LACBS006E 3300001864 Metagenome Analysis released by JGI data releasing policy No Yes benstenuit@gmail.com Benoit stenuit, Ben A. Stenuit No Engineered Bioremediation Chloroethene Tetrachloroethylene and derivatives Bioreactor Trichloroethene dechlorinating bioreactor 37.87 -122.26 63059539 114866 0 1 0 0 0.0 Metagenome 3300011221 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00488 Weill Cornell Medical College 3300011221 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.82 -73.89 32514967 60213 23 0 26 0 SRX822457 0.0 Metagenome 3300035390 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Marine sediment microbial communities from Garden Banks mud volcano, Gulf of Mexico, United States - st louis 3 DOE Joint Genome Institute (JGI) 3300035390 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Mud volcano Marine Sediment sediment 27.5 -92.5 111010866 140645 88 0 91 0 SRX8343630 Unrestricted 87.54 Metagenome 3300004231 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 79_HOW10 DOE Joint Genome Institute (JGI) 3300004231 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 136218515 293167 48 0 102 1 SRX2721062 Unrestricted 0.0 Metagenome 3300045511 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Cordillera ecozone, Canada - Lake 13-524 Genome Quebec 3300045511 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 60.322662 -137.015561 1057457550 2400167 507 163 837 328 0.0 Metagenome 3300025638 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNTR2_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025638 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 34.65 135.05 444494212 748563 380 0 518 0 SRX2338995 Unrestricted 0.0 Metagenome 3300025373 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls B (FF_Mn_B) MetaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025373 Metagenome Analysis spades v. 3.11.1 Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Lotic Freshwater Unclassified Freshwater 44.376 -110.69 137246479 221487 73 0 97 0 SRX2577163 Unrestricted 0.0 Metagenome 3300049441 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 soil DOE Joint Genome Institute (JGI) 3300049441 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.588011 -123.192906 6.23 325012923 602498 213 9 420 15 Unrestricted 19.26 Metagenome 3300051214 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Tims Branch Stream, Aiken, South Carolina, USA - timsbranch_2019_sw_WHONDRS-S19S_0057 (version 2) DOE Joint Genome Institute (JGI) 3300051214 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 33.3377 -81.7181 371254504 629058 252 75 405 91 Restricted 0.0 Metagenome 3300034035 *Microbiome Permanent Draft Deception Metagenome Glacier sediment microbial communities near Fumarole Bay, Deception Island, Antarctica - FBC2 The Brazilian National Council for Scientific and Technological Development (CNPq) 3300034035 Metagenome Analysis IDBA-ud v. 1.1.1 released per Amanda Bendia -- GOLD-1013 No Yes amandagbendia@gmail.com Amanda Bendia No Environmental Aquatic Ice Freshwater Glacier glacier sediment -62.96 -60.71 47859555 71104 14 1 28 3 0.0 Metagenome 3300006346 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0770m University of Hawaii 3300006346 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes ktennessen@lbl.gov Kristin Tennessen No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 289476561 620110 445 11 656 19 0.0 Metagenome 3300006917 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNA DOE Joint Genome Institute (JGI) 3300006917 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 981351086 2207681 550 167 888 345 SRX2856845 Unrestricted 0.0 Metagenome 3300011697 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00668 Weill Cornell Medical College 3300011697 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.82 -73.93 30547947 43906 11 0 28 0 SRX822635 0.0 Metagenome 3300049579 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 DOE Joint Genome Institute (JGI) 3300049579 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.40849 -82.168434 1545019465 2469856 596 42 985 64 Unrestricted 15.31 Metagenome 3300045837 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - CSA2S DOE Joint Genome Institute (JGI) 3300045837 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 2035665358 3417599 718 23 1254 48 Unrestricted 14.58 Metagenome 2007309000 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone Bath Hot Springs, Wyoming, USA - Filamentous sample DOE Joint Genome Institute (JGI) 2007309000 Metagenome Analysis Filaments collected from outflow channel No Yes binskeep@montana.edu, dmead@varigenbio.com William Inskeep, David Mead Yes 23653623 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.560318 -110.8338344 9.3 10490501 14864 5 0 5 0 Unrestricted 0.0 Metagenome 3300053124 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 endosphere DOE Joint Genome Institute (JGI) 3300053124 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.587994 -123.192874 485622427 630773 86 78 116 92 Unrestricted 0.0 Metagenome 3300011901 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00266 Weill Cornell Medical College 3300011901 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.75 -73.97 43954895 84278 27 0 37 0 SRX822239 0.0 Metagenome 3300009817 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S3_10_20 DOE Joint Genome Institute (JGI) 3300009817 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228508 -119.2716818 175767286 388008 196 3 348 5 SRX2522723 Unrestricted 0.0 Metagenome 3300026633 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1101 (SPAdes) DOE Joint Genome Institute (JGI) 3300026633 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 2406109 8098 32 0 56 6 SRX1987004 Unrestricted 0.0 Metagenome 3300026378 *Microbiome Permanent Draft Soil microbial communities from hillslopes of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-4-E_D DOE Joint Genome Institute (JGI) 3300026378 Metagenome Analysis spades v. 3.11.1 Yes Yes laurameredith@email.arizona.edu Laura Meredith No Engineered Artificial ecosystem Soil Mesocosm Unclassified soil 32.5788 -110.8509 83692996 221161 113 2 186 4 SRX4547811 Unrestricted 79.24 Metagenome 3300035672 *Microbiome Permanent Draft Forest soil microbial communities from Eldorado National Forest, California, USA Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_CNT_2.1 DOE Joint Genome Institute (JGI) 3300035672 Metagenome Analysis metaspades v. 3.13.0 Yes Yes ndove7@gmail.com Nicholas Dove No Environmental Terrestrial Temperate forest Soil Bulk soil soil 38.7384 -120.4045 1940430149 4635609 1091 113 2009 184 SRX8239472 Unrestricted 8.06 Metagenome 3300009531 *Microbiome Permanent Draft Host-associated microbial communities of aphids from plants in several locations around USA Microbial communities of aphids from cabbage in Tucson, AZ, USA - Lipaphis pseudobrassicae NM032704 seqcov University of Texas, Austin 3300009531 Metagenome Analysis CLC Genomics released per JGI data release policy Yes Yes becky.chong@utexas.edu Rebecca Chong No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified cabbage 32.23184 -110.950699 206796682 110075 2 1 1 2 0.0 Metagenome 3300043259 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from Nevada, United States - King's Pool (KP_S1) (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043259 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified Desert spring 36.4015 -116.2738 7.46 822170306 1229778 350 14 551 13 SRX9167238 Unrestricted 43.12 Metagenome 3300005653 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus leukodermatus Group 2 BELIZE.1 DOE Joint Genome Institute (JGI) 3300005653 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 955426745 2157936 26 11 20 15 SRX2712252 Unrestricted 0.0 Metagenome 3300050286 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_45 DOE Joint Genome Institute (JGI) 3300050286 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -75.482 159.591 306899139 441713 71 19 93 21 SRX18235973 Restricted 43.86 Metagenome 3300020517 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 30NOV2011 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020517 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 101948606 207568 83 16 150 29 SRX1989733 Unrestricted 0.0 Metagenome 3300038394 *Microbiome Draft Marine microbial communities from Baffin Bay, Canada Marine microbial communities from Baffin Bay, Canada - S117_1m Genome Quebec 3300038394 Metagenome Analysis Spades v. 3.12.0 released by JGI data releasing policy Yes Yes thomas.grevesse@gmail.com Thomas Grevesse No Environmental Aquatic Oceanic Marine Photic zone marine 77.19442 -77.077 606500251 1367448 274 179 416 293 0.0 Metagenome 3300038972 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-10-3_at_7-8_cm Genome Quebec 3300038972 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.88147 -73.76618 647836424 1625802 582 3 1141 2 0.0 Metagenome 3300047450 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_171025.NP2 DOE Joint Genome Institute (JGI) 3300047450 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 338792856 698539 281 33 428 57 Unrestricted 8.88 Metagenome 3300035126 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME22Aug2011-rr0173 DOE Joint Genome Institute (JGI) 3300035126 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1315885137 2767437 829 109 1267 185 SRX7710010 Unrestricted 11.09 Metagenome 3300049848 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Tennessee, USA - lecontecreek_2019_sed_WHONDRS-S19S_0018 DOE Joint Genome Institute (JGI) 3300049848 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 35.6922935 -83.504941 204409330 517998 297 3 598 1 Restricted 0.0 Metagenome 3300071096 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from North Sterling, Colorado, USA - STER_029-M-20170605-COMP-DNA1 3300071096 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Agricultural land Soil 91749450 265557 95 3 173 5 0.0 Metagenome 3300029647 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37304R1 Beijing Genomics Institute (BGI) 3300029647 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 76077790 100740 79 0 106 0 0.0 Metagenome 3300022883 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4 DOE Joint Genome Institute (JGI) 3300022883 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 342375654 885281 507 33 935 49 SRX4801280 Unrestricted 8.4 Metagenome 3300012237 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01142 Weill Cornell Medical College 3300012237 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.68 -73.9 20660387 31319 10 0 13 0 SRX823097 0.0 Metagenome 3300014016 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00405 Weill Cornell Medical College 3300014016 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.94 20178739 35724 28 0 44 0 SRX822376 0.0 Metagenome 3300045943 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Leaf microbial communities from farm grass in Deerfield, Massachusetts, United States - Orchardgrass_Phyllosphere_Control1 DOE Joint Genome Institute (JGI) 3300045943 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 42.4788 -72.5788 1096551433 1911149 142 158 243 244 Restricted 0.0 Metagenome 3300057168 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2020-0015 DOE Joint Genome Institute (JGI) 3300057168 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.70406 -83.25291 446171540 934496 375 151 601 226 Unrestricted 17.27 Metagenome 3300037047 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Coal bed water microbial communities from the Powder River Basin, Montana, United States - T0FGP DOE Joint Genome Institute (JGI) 3300037047 Metagenome Analysis metaspades v. 3.13.0 Yes Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Aquatic Groundwater Deep subsurface Coalbed methane well water coal bed water 45.435 -106.392 891182002 1124563 364 3 500 5 SRX8395085 Unrestricted 25.82 Metagenome 3300070247 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Bartlett Experimental Forest, New Hampshire, USA - BART_036-O-20170613-COMP-DNA1 3300070247 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 34530904 100218 58 11 133 17 0.0 Metagenome 3300048643 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from North Pacific Ocean - CTD-AT42-06-002-1000m-0.65 DOE Joint Genome Institute (JGI) 3300048643 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 8.39977 -104.9807 296841886 538297 209 40 330 61 Unrestricted 49.58 Metagenome 3300045063 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Plains ecozone, Canada - Lake 04-578 Genome Quebec 3300045063 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 68.350907 -133.708655 1254423377 3021225 661 226 1022 433 0.0 Metagenome 3300047534 *Microbiome Permanent Draft Floating fern leaf microbial communities from various locations Floating fern leaf microbial communities from Ubon Ratchathani, Thailand - 0105_IRRI DOE Joint Genome Institute (JGI) 3300047534 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dave.armitage@gmail.com David Armitage No Host-associated Plants Phylloplane/Leaf Phyllosphere Endophytes Leaf 15.1952 104.8726 6364362 8280 7 4 7 4 Unrestricted 2864.3 Metagenome 3300029055 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 272_M Beijing Genomics Institute (BGI) 3300029055 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 160551167 210699 126 0 187 0 ERX491054 0.0 Metagenome 3300019821 *Microbiome Permanent Draft Metagenomes derived from Kamchatkian Hot springs Sediment microbial community from hot sping in the Uzon Caldera, Kamchatka, Russia - sample 1 Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory 3300019821 Metagenome Analysis metaSPAdes v3.10.1 released by JGI data releasing policy No Yes bwemheu@gwdg.de Bernd Wemheuer No Environmental Aquatic Hot (42-90C) Thermal springs Alkaline sediment 54.51 159.91 114589344 208915 98 0 118 2 0.0 Metagenome 3300056610 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.16W.13 SIP fraction DOE Joint Genome Institute (JGI) 3300056610 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 147834673 297028 100 35 177 61 Unrestricted 11.0 Metagenome 3300042322 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME04May2005-rr0717 DOE Joint Genome Institute (JGI) 3300042322 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 557677006 868493 150 40 189 41 Unrestricted 23.94 Metagenome 3300007210 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 764062976 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007210 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 160776829 231021 133 0 191 1 0.0 Metagenome 3300055387 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.19C.11 SIP fraction DOE Joint Genome Institute (JGI) 3300055387 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 131362478 260797 123 46 242 69 Unrestricted 10.71 Metagenome 3300003419 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from above oceans and continental USA - SEAC4RS-RF8-008 DOE Joint Genome Institute (JGI) 3300003419 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 743958 2546 15 7 15 10 Unrestricted 0.0 Metagenome 3300070458 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_002-O-20180717-COMP-DNA1 3300070458 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 31082642 101299 157 11 227 20 0.0 Metagenome 3300043091 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver stomach microbial communities from Maple Ridge, British Columbia, Canada - Beaver5Stomach1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043091 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Stomach Digestive system Unclassified stomach 49.18 -122.54 83686979 194424 23 19 24 24 SRX8346147 Unrestricted 77.48 Metagenome 3300049140 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S32_A_D89 hydrophilic DOE Joint Genome Institute (JGI) 3300049140 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 606236010 1002631 275 19 458 23 Unrestricted 22.66 Metagenome 3300070737 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_006-M-20190731-COMP-DNA1 3300070737 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 3616501 12143 36 3 75 4 0.0 Metagenome 2236876005 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Estuarine microbial communities from Columbia River, sample from South Channel ETM site, GS313-3LG-ETM-15m University of South Carolina 2236876005 Metagenome Analysis No Yes mariyasmit@hotmail.com Mariya Smit, Mariya W. Smit No Environmental Aquatic Intertidal zone Marine Estuary Marine estuarine 46.249 -123.986 76100670 213588 167 86 325 144 0.0 Metagenome 3300013410 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100183 University of Pennsylvania 3300013410 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8420327 15594 5 2 13 6 SRX756350 0.0 Metagenome 3300036858 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_Dec_plot3_rep3 DOE Joint Genome Institute (JGI) 3300036858 Metagenome Analysis metaspades v. 3.13.0 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6591 -80.6279 1446809262 2443572 561 7 978 6 SRX8181820 Unrestricted 13.52 Metagenome 3300003605 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls C (FF_Mn_C) DOE Joint Genome Institute (JGI) 3300003605 Metagenome Analysis Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Lotic Freshwater Unclassified Freshwater 44.376 -110.69 114595371 204406 74 1 98 1 SRX2577196, SRX2577195 Unrestricted 0.0 Metagenome 3300005384 *Microbiome Permanent Draft Marine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica Marine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica - Winter v2 DOE Joint Genome Institute (JGI) 3300005384 Metagenome Analysis LUCY, PGA Assembler released based on JGI ITS No Yes alison.murray@dri.edu Alison Murray No Environmental Aquatic Oceanic Marine Photic zone Marine -64.766667 -64.05 3492552 4265 12 0 14 0 Unrestricted 0.0 Metagenome 3300017690 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_03OCT2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017690 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 205765715 400234 52 74 87 123 SRX3927228 Unrestricted 9.99 Metagenome 3300024938 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 75_LOW10 (SPAdes) DOE Joint Genome Institute (JGI) 3300024938 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 61136293 99837 21 0 35 0 SRX2720795 Unrestricted 0.0 Metagenome 3300002382 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 26OCT2009 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002382 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 24118458 63501 59 8 129 16 SRX1988280 Unrestricted 0.0 Metagenome 3300051440 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA River water microbial communities from Olympic Peninsula, Washington, USA - W_SEK2_D5 DOE Joint Genome Institute (JGI) 3300051440 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Aquatic River Freshwater Unclassified River water 48.165 -124.245 187541442 314654 139 28 207 47 Unrestricted 61.07 Metagenome 3300050308 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_71 DOE Joint Genome Institute (JGI) 3300050308 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.598 161.007 685020060 1047884 196 28 292 42 SRX18236992 Restricted 28.25 Metagenome 3300055369 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Wyoming, USA - M_L2_S1 DOE Joint Genome Institute (JGI) 3300055369 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 41.11606 -106.14926 2293847 4431 21 15 33 26 Unrestricted 0.0 Metagenome 7000000652 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160400887 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000652 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 132521956 244747 0 0 0 0 0.0 Metagenome 3300055555 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.16C.14 SIP fraction DOE Joint Genome Institute (JGI) 3300055555 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 251760455 466276 51 42 90 47 Unrestricted 10.41 Metagenome 3300047282 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Apalachicola River, Florida, USA - NASQAN2015_101 DOE Joint Genome Institute (JGI) 3300047282 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 29.9493 -85.0154 265767403 613933 255 15 477 34 Unrestricted 29.8 Metagenome 3300060389 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210612_16_05 DOE Joint Genome Institute (JGI) 3300060389 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 337405618 479109 208 124 260 147 Unrestricted 35.84 Metagenome 3300026464 *Microbiome Permanent Draft Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 CS5 DOE Joint Genome Institute (JGI) 3300026464 Metagenome Analysis spades v. 3.11.1 Yes Yes ccraft@indiana.edu Chris Craft No Environmental Aquatic Wetlands Freshwater Sediment sediment 31.3377 -81.4644 143529698 406070 382 13 690 18 SRX4796667 Unrestricted 6.84 Metagenome 3300036451 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C7-9A DOE Joint Genome Institute (JGI) 3300036451 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 159021277 483656 305 8 537 14 SRX8814843 Unrestricted 4.88 Metagenome 3300017994 *Microbiome Permanent Draft Coastal wetland sediment microbial communities from the Mid-Atlantic and Southeast Atlantic Coast of USA, responding to salinity intrusion. Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2 DOE Joint Genome Institute (JGI) 3300017994 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Freshwater sediment 35.9061 -76.1569 620177581 1471262 600 10 1136 20 SRX4369409 Unrestricted 4.09 Metagenome 7000000021 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2 of subject 158256496 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000021 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 11706187 19241 0 0 0 0 SRX023591, SRX023592, SRX024689, SRX024688 0.0 Metagenome 3300034972 *Microbiome Finished Coastal sediment microbial communities from Western Antarctica Coastal sediment microbial communities from Western Antarctica - 2_event108 Megahit 108 Michigan State University 3300034972 Metagenome Analysis Megahit v. 1.1 released by Deric Learman No Yes deric.learman@cmich.edu Deric Learman No Environmental Aquatic Coastal Marine Sediment marine sediment -74.4 168.3 279602182 526588 123 29 275 50 0.0 Metagenome 3300024305 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Saline wetland microbial communities from Lincoln, Nebraska, United States - Carb-i39 DOE Joint Genome Institute (JGI) 3300024305 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Salt marsh Non-marine Saline and Alkaline Unclassified saline wetland 40.8786 -96.6766 19462935 19750 17 0 13 0 SRX4549818 Unrestricted 339.83 Metagenome 3300009154 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG DOE Joint Genome Institute (JGI) 3300009154 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 46.8319 -72.5 1127946690 2069485 721 211 1084 323 SRX2955012 Unrestricted 0.0 Metagenome 3300026002 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_202 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026002 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 32880423 100094 131 2 215 8 SRX2564883, SRX2581057 Unrestricted 0.0 Metagenome 3300007855 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 160704339 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007855 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 14089804 22658 13 2 24 5 SRX024605, SRX025508, SRX024606, SRX025500 0.0 Metagenome 3300070851 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Treehaven, Wisconsin, USA - TREE_004-O-20200708-COMP-DNA1 3300070851 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 17154265 52237 117 0 190 1 0.0 Metagenome 3300059706 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059706 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 107471453 254491 120 39 159 58 SRX2753547 Unrestricted 0.0 Metagenome 3300003973 *Microbiome Permanent Draft Ips typographus gut microbial communities from Hannover, Germany Ips typographus gut microbial communities from Hannover, Germany - first DNA extraction october 2014, adult beetle HPI Heinrich-Pette-Institut 3300003973 Metagenome Analysis IDBA-UD 1.1 released per JGI data release policy No Yes wolfgang.streit@uni-hamburg.de Wolfgang Streit No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Ips typographus gut 218627726 434220 121 84 192 213 0.0 Metagenome 3300050709 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water viral communities from Sandhills, Nebraska, United States - NSL_Island_2017_V DOE Joint Genome Institute (JGI) 3300050709 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.73469 -102.41001 452721492 1111959 104 4 174 8 Unrestricted 43.9 Metagenome 3300018016 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40 DOE Joint Genome Institute (JGI) 3300018016 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 849147719 1544675 434 6 702 10 SRX3960473 Unrestricted 13.85 Metagenome 3300015355 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_12JUL2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015355 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 489276978 824089 15 84 16 122 SRX3923579 Unrestricted 9.95 Metagenome 3300042310 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Nov2011-rr0457 DOE Joint Genome Institute (JGI) 3300042310 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 684459352 1055457 289 55 378 70 Unrestricted 19.81 Metagenome 3300069386 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Woodworth, Northern Plains, ND, USA - WOOD_002-M-20140702-COMP-DNA1 re-annotation Argonne National Laboratory 3300069386 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12823 -99.24136 599447 2001 8 0 25 2 ERX2133991 0.0 Metagenome 3300005872 *Microbiome Permanent Draft Rhizosphere and bulk soil microbial communities from Harvard Forest, USA Bulk soil microbial communities from Harvard Forest, USA - 3Bulk_unsorted metaG DOE Joint Genome Institute (JGI) 3300005872 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes deangelis@microbio.umass.edu Kristen M DeAngelis PhD, Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Bulk soil bulk soil 42.5502 -72.1737 174100691 713947 106 9 217 21 SRX2718034 Unrestricted 0.0 Metagenome 3300001371 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Baker-B-sed University of South Carolina 3300001371 Metagenome Analysis Velvet released per JGI data release policy No Yes mariyasmit@hotmail.com Mariya Smit, Mariya W. Smit No Environmental Aquatic Intertidal zone Marine Sediment Marine estuarine 46.28551 -124.05187 7.5 537918774 928712 263 9 531 11 0.0 Metagenome 3300037726 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site1_salt_MII_1 DOE Joint Genome Institute (JGI) 3300037726 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Tidal flats microbial mat 20.7609 58.6478 291638935 563761 176 10 283 8 SRX9169794 Unrestricted 16.37 Metagenome 3300044643 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME30Jun2014-rr0938 DOE Joint Genome Institute (JGI) 3300044643 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 854647806 1312253 308 47 404 63 Unrestricted 18.92 Metagenome 3300027366 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1547B-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027366 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2314 -123.8828 182967007 384276 167 20 260 31 SRX2753627 Unrestricted 0.0 Metagenome 3300060367 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210615_19_17 DOE Joint Genome Institute (JGI) 3300060367 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 335919747 505592 178 90 248 121 Unrestricted 39.54 Metagenome 3300032309 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada - Lake 08-138 Genome Quebec 3300032309 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.892125 -74.028641 799963543 1691171 484 105 775 253 0.0 Metagenome 3300013734 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01011 Weill Cornell Medical College 3300013734 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.58 -73.82 29388833 46787 20 1 27 1 SRX822973 0.0 Metagenome 3300039617 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Temperate deciduous broadleaf forest soil microbial communities from Baltimore, USA - 018_R1_022417 University of Maryland 3300039617 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate deciduous broadleaf forest soil 39.4825 -76.68276667 78014148 221139 197 28 351 38 0.0 Metagenome 3300043169 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_500m_C5_10cm15cm (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043169 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 37.0366 -121.2986 310734744 507544 197 0 360 0 SRX9141401 Unrestricted 39.93 Metagenome 3300043636 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 340-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043636 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9527 -107.0663 443172671 1335469 641 44 1179 67 Unrestricted 7.01 Metagenome 3300005560 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0919_05_20cm DOE Joint Genome Institute (JGI) 3300005560 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2559866860 7773710 2756 74 4716 137 SRX2727701, SRX2727700 Unrestricted 0.0 Metagenome 3300000115 *Microbiome Draft Marine microbial communities from Delaware Coast Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011 DOE Joint Genome Institute (JGI) 3300000115 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Marine 38.848917 -75.1076 524209194 1204138 205 56 360 80 Unrestricted 0.0 Metagenome 3300045876 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from the Midway Geyser Basin, Yellowstone National Park, WY, United States - MSUNE_MGB_01 University of Wisconsin, Madison 3300045876 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.51914 -110.80914 86885467 124000 30 5 37 6 0.0 Metagenome 3300038464 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 S3 30-34 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300038464 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3531 19.0476 584307258 960065 203 5 289 11 SRX8138172, SRX8138173 Unrestricted 0.0 Metagenome 3300011707 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00529 Weill Cornell Medical College 3300011707 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.99 31076741 49660 16 0 30 0 SRX822497 0.0 Metagenome 3300033519 *Microbiome Permanent Draft Sinkhole microbial mat communities from Lake Huron, Michigan, USA Sinkhole microbial mat communities from Lake Huron, Michigan, USA - SG0320 University of Michigan 3300033519 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy Yes Yes sgrim01@gmail.com Sharon Grim No Environmental Aquatic Sinkhole Freshwater Unclassified microbial mat 45.19843 -83.32721 255533203 313429 97 14 126 15 0.0 Metagenome 3300034378 *Microbiome Permanent Draft Hypersaline lacustrine bacterial communities from Kiritimati Island Lacustrine bacterial communities from hypersaline Lake 1, Kiritimati Island, Kiribati - 40.2 cm University of Illinois, Urbana-Champaign 3300034378 Metagenome Analysis MEGAHIT v. 1.1.1 released by Mingfei Chen No Yes jconro@illinois.edu Jessica Conroy No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Sediment lacustrine 1.9 -157.4 289112036 527534 154 1 303 0 0.0 Metagenome 3300017978 *Microbiome Permanent Draft Freshwater microbial communities from rivers and streams along an organic matter gradient associated with agriculture in Ontario, Canada Freshwater microbial communities from Tributary to Schomber, Ontario, Canada - S42 Molecular Research LP (MR DNA) 3300017978 Metagenome Analysis metaSPAdes released by JGI data releasing policy No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lotic Freshwater Unclassified Freshwater 44.06103 -79.6289 8.37 235211243 763976 47 6 118 15 0.0 Metagenome 3300027514 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN91 (SPAdes) DOE Joint Genome Institute (JGI) 3300027514 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 39.23550963 -121.2836963 169023987 559852 185 11 387 19 SRX1986450, SRX1986449 Unrestricted 0.0 Metagenome 3300043500 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 028-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043500 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9567 -106.9861 403562467 1135014 619 52 1201 95 Unrestricted 7.54 Metagenome 3300000168 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P12 10m DOE Joint Genome Institute (JGI) 3300000168 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Photic zone Marine 48.97 -130.666667 50896847 127111 61 11 142 12 Unrestricted 0.0 Metagenome 3300005109 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage D2F03 DOE Joint Genome Institute (JGI) 3300005109 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 43011508 67163 154 1 233 4 SRX3195124 Unrestricted 0.0 Metagenome 3300041030 *Microbiome Permanent Draft Hydraulic fracturing wastewater impacted soil microbiome project Soil microbial communities from Grande Prairie, Alberta, Canada - GP027 University of British Columbia 3300041030 Metagenome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy Yes Yes alessi@ualberta.ca Daniel S. Alessi No Environmental Terrestrial Unclassified Soil Unclassified Soil 55.1707 -118.7884 2955936 4135 11 2 31 1 0.0 Metagenome 3300009638 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_10_10 DOE Joint Genome Institute (JGI) 3300009638 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 279588428 562687 179 24 374 42 SRX3003284 Unrestricted 0.0 Metagenome 3300013486 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00980 Weill Cornell Medical College 3300013486 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.64 -73.82 16530933 23822 6 0 19 0 SRX822942 0.0 Metagenome 3300011156 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00457 Weill Cornell Medical College 3300011156 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.69 -73.99 21963481 41309 25 0 40 0 SRX822426 0.0 Metagenome 3300012082 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ032 MetaG DOE Joint Genome Institute (JGI) 3300012082 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.7124 -74.5643 223089135 406223 221 19 337 40 SRX3539467 Unrestricted 0.0 Metagenome 3300002898 *Microbiome Permanent Draft Biogas fermenter microbial communities from the University of Hamburg, Germany Metagenome Biopara biogasfermenter May 2013 pooled 3300002898 Metagenome Analysis released by JGI data releasing policy No Yes Guellert S; Wolfgang Streit No Engineered Unclassified Unclassified Unclassified Unclassified Biogas fermenter 50.823236 7.142629 1255011327 2000689 1511 5 2777 11 0.0 Metagenome 3300055060 *Microbiome Permanent Draft Soil biocrust microbial and viral communities from model ecosystem in Berkeley Lab, California, USA Soil biocrust microbial communities from model ecosystem in Berkeley Lab, California, USA - 48hr_A DOE Joint Genome Institute (JGI) 3300055060 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sroux@lbl.gov Simon Roux No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil biocrust 37.87739 -122.250939 1529932824 2586858 616 15 939 25 Restricted 29.03 Metagenome 3300031748 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22 DOE Joint Genome Institute (JGI) 3300031748 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1653726561 4122047 477 4 802 3 SRX5817196 Unrestricted 13.43 Metagenome 3300015084 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Storglaciaren, Tarfala, Sweden (Sample st-5a, rocky medial moraine) University of Bristol 3300015084 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.901082 18.428257 6.3 121520140 259619 117 9 173 15 0.0 Metagenome 3300023170 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (version 2) DOE Joint Genome Institute (JGI) 3300023170 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1190167428 2342705 484 25 744 38 SRX4072456 Unrestricted 23.41 Metagenome 3300014497 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG DOE Joint Genome Institute (JGI) 3300014497 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.1591 -96.4086 1621723882 3719599 1383 122 2281 226 SRX3579945 Unrestricted 8.2 Metagenome 3300040537 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone Northern Range (Frog Rock), Northern Rockies, WY, USA - YELL_016-M-20180710-COMP-DNA1 Battelle Memorial Institute 3300040537 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 44.95348 -110.53914 2882445 9399 41 3 66 7 0.0 Metagenome 3300004192 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 70_HOW9 DOE Joint Genome Institute (JGI) 3300004192 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 131728472 278428 74 2 128 11 SRX2720790 Unrestricted 0.0 Metagenome 3300039352 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 203_12M Beijing Genomics Institute (BGI) 3300039352 Metagenome Analysis Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 27769570 30803 22 0 47 0 ERX490999 0.0 Metagenome 3300030044 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_2 DOE Joint Genome Institute (JGI) 3300030044 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 826730137 1574686 526 130 816 239 SRX5356818 Unrestricted 10.55 Metagenome 3300007286 *Microbiome Permanent Draft Activated Sludge Process Metagenomes Activated sludge microbial communities from bioreactor with dissolved oxygen in CSIR-NEERI, Nagpur, India - 1ppm of oxygen, sample A Xcelris labs Ltd 3300007286 Metagenome Analysis covaris released per JGI data release policy No Yes neetijadeja@hotmail.com Niti B Jadeja, Niti Jadeja No Engineered Wastewater Unclassified Activated Sludge Unclassified aeration tank of activated sludge process 21.1458004 79.0881546 96235532 235373 46 6 95 5 0.0 Metagenome 3300040811 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Estuary water microbial communities from Narragansett Bay, Rhode Island, USA - E3_negO2A DOE Joint Genome Institute (JGI) 3300040811 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.9078 -71.5683 603365795 918411 293 42 404 54 SRX9641407 Unrestricted 16.21 Metagenome 3300007072 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC9 2012 metaG DOE Joint Genome Institute (JGI) 3300007072 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jkjarett@lbl.gov, jkjarett@lbl.gov; rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca; twoyke@lbl.gov Jessica Jarett, Jessica Jarett; Ramunas Stepanauskas; Peter Dunfield; Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 49.9543 -116.5155 7.94 824919791 1224185 581 6 867 6 SRX2839020 Unrestricted 0.0 Metagenome 3300045957 *Microbiome Permanent Draft Sediment microbial communities from various rivers and their estuaries in the United States Sediment microbial communities from San Diego River estuary, California, United States - BTRS19_Sengupta_3S DOE Joint Genome Institute (JGI) 3300045957 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sg.aditi@gmail.com Aditi Sengupta No Environmental Aquatic Intertidal zone Marine Estuary sediment 32.7606 -117.2195 1669658746 2746154 771 61 1226 75 Unrestricted 15.98 Metagenome 3300048045 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BG2-13_D0 (version 2) DOE Joint Genome Institute (JGI) 3300048045 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3634 19.0475 163237790 298905 115 10 147 15 Restricted 0.0 Metagenome 3300029653 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35653 Beijing Genomics Institute (BGI) 3300029653 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 113213559 137248 89 0 109 0 0.0 Metagenome 3300032184 *Microbiome Permanent Draft Microbial communities from various environments in Magnetic Island Reef, Townsville, Australia Sediment microbial communities from Magnetic Island Reef, Townsville, Australia - 36340 AGRF 3300032184 Metagenome Analysis SpAdes v. 3.13.0 released by JGI data releasing policy Yes Yes b.glasl@aims.gov.au Bettina Glasl No Environmental Aquatic Coastal Marine Sediment Sediment -19.1531 146.8641 1785052514 4772603 897 41 1343 86 0.0 Metagenome 3300069310 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Desert Southwest, AZ, USA - SRER_001-M-20170815-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069310 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.91068 -110.83549 14201772 40196 51 7 100 8 0.0 Metagenome 2048955004 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Singapore and Univ of Illinois at Urbana, that are terephthalate-degrading Wastewater bioreactor microbial communities from Univ ogf Illinois, Urbana - Sample 414 DOE Joint Genome Institute (JGI) 2048955004 Metagenome Analysis released per Simon -- IMGSUPP2949 No Yes sgtringe@lbl.gov Susannah Tringe Yes 20686509 Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater bioreactor 40.1097 -88.2041 6889424 13459 7 0 10 0 0.0 Metagenome 3300033759 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Loreto, Peru - SR_B DOE Joint Genome Institute (JGI) 3300033759 Metagenome Analysis spades v. 3.13.0 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Unclassified peatland -4.5438 -74.6258 169462917 567360 380 7 681 12 SRX7525217 Unrestricted 5.12 Metagenome 3300030660 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Indian Ocean - SGB2 Michigan State University 3300030660 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 12.496667 47.075 60475780 180062 4 1 30 1 0.0 Metagenome 3300008089 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764285508 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008089 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 163316767 243988 135 0 148 0 0.0 Metagenome 3300048918 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 DOE Joint Genome Institute (JGI) 3300048918 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Rhizoplane Roots Unclassified Rhizoplane soil 42.40581 -85.40228 1679600251 2712597 546 48 834 63 Unrestricted 12.99 Metagenome 3300000447 *Microbiome Draft Alkaline sediment microbial communities from Soda lakes and Soda Solonchak soils Alkaline sediment microbial communities from bioreactor in Netherlands - Reactor TP_S13sol DOE Joint Genome Institute (JGI) 3300000447 Metagenome Analysis released based on JGI ITS Yes Yes g.muijzer@uva.nl Gerard Muyzer No Environmental Aquatic Alkaline Non-marine Saline and Alkaline Sediment Alkaline sediment 52.002 4.371 49322233 72801 45 0 56 0 Unrestricted 0.0 Metagenome 3300035182 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - RO1DNA_8/2/18_3/3_sediment DOE Joint Genome Institute (JGI) 3300035182 Metagenome Analysis metaspades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5106 -110.3566 1941576214 3353677 1017 252 1488 387 SRX8287279 Unrestricted 20.47 Metagenome 3300037761 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_072517_82_94_jgi DOE Joint Genome Institute (JGI) 3300037761 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2155244499 3376056 686 7 1066 7 SRX9162755 Unrestricted 15.63 Metagenome 3300027321 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage D2F10 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027321 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 35970623 49287 38 0 37 0 SRX3195125 Unrestricted 0.0 Metagenome 3300027754 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027754 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 45.4091 -72.0994 801650580 1519674 343 61 513 73 SRX2996438 Unrestricted 0.0 Metagenome 3300025817 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWA_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025817 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 37.926434 -122.509186 362305846 646671 243 0 353 2 SRX7142929 Unrestricted 0.0 Metagenome 3300042386 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME31Oct2018-rr0855 DOE Joint Genome Institute (JGI) 3300042386 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 777650599 1235264 302 75 414 102 Unrestricted 21.77 Metagenome 2199352029 *Microbiome Permanent Draft Subaerial biofilm microbial communities from sulfidic caves, Italy, that are extremely acidic Subaerial biofilm microbial communities from sulfidic caves, Italy, that are extremely acidic - Ramo Sulfureo RS9 Pennsylvania State University 2199352029 Metagenome Analysis Public release - Daniel Jones (April 29, 2016) No Yes djones@psu.edu Daniel Jones No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Subaerial biofilm 43.398358 12.962139 6725589 10921 0 0 0 0 0.0 Metagenome 3300070253 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Virginia, USA - BLAN_032-M-20200714-COMP-DNA1 3300070253 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 2727151 9472 57 3 73 6 0.0 Metagenome 3300028858 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N3_2 DOE Joint Genome Institute (JGI) 3300028858 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 424517213 1031441 743 118 1198 188 SRX5355856 Unrestricted 0.0 Metagenome 3300034779 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 41SMS DOE Joint Genome Institute (JGI) 3300034779 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Sub-biocrust Soil Unclassified sub-biocrust soil 34.7856 -115.66 281827484 685166 454 13 806 24 SRX7621470 Unrestricted 9.48 Metagenome 3300018080 *Microbiome Permanent Draft Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaG DOE Joint Genome Institute (JGI) 3300018080 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes valentine@geol.ucsb.edu David Valentine No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Sediment Hypersaline lake sediment 33.4166 -115.9166 2433289617 4778112 1880 31 3100 58 SRX3905564 Unrestricted 8.06 Metagenome 3300025531 *Microbiome Permanent Draft Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico and Hudson Canyon, USA Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN4B Hudson Canyon (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025531 Metagenome Analysis spades v. 3.11.1 Yes Yes mcredmond@uncc.edu Molly C. Redmond No Environmental Aquatic Cold seeps Marine Unclassified Methane seep mesocosm 39.54 -72.41 310104354 558480 182 0 290 0 SRX2754427 Unrestricted 0.0 Metagenome 3300012276 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01046 Weill Cornell Medical College 3300012276 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.67 -73.91 45335536 74018 36 0 40 0 SRX823008 0.0 Metagenome 3300071145 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone National Park, Wyoming, USA - YELL_003-M-20190821-COMP-DNA1 3300071145 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 3624655 11678 50 2 99 7 0.0 Metagenome 3300032000 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3 DOE Joint Genome Institute (JGI) 3300032000 Metagenome Analysis spades v. 3.13.0 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Bulk soil soil 39.6475 -79.9369 1651468217 4265445 1257 31 2365 54 SRX5809878 Unrestricted 7.37 Metagenome 7000000066 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 763901136 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000066 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 2217489 3767 0 0 0 0 SRX024086, SRX098546 0.0 Metagenome 3300035251 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Marine sediment microbial communities from Algarve, Portugal - SD03 Euk Molecular Research LP (MR DNA) 3300035251 Metagenome Analysis Metawrap workflow v. 1.0.5 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Environmental Aquatic Oceanic Marine Sediment marine sediment 36.979778 -7.989111 12007 6 0 0 0 0 0.0 Metagenome 3300025264 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025264 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 39.48 6.37 239192995 486148 88 0 92 0 SRX2753804 Unrestricted 0.0 Metagenome 3300002988 *Microbiome Permanent Draft Wetland sediment microbial communities from Dorn Creek, Dane County, Wisconsin, USA, enriched for Fe-cycling cultures Fe-reducing enrichment culture from wetland sample 1 3300002988 Metagenome Analysis CLC Genomic Workbench released by JGI data releasing policy Yes Yes jmejia@wisc.edu Jacqueline Mejia No Environmental Aquatic Creek Freshwater Sediment Wetland sediment 43.135131 -89.441777 511934306 1158648 385 5 848 10 0.0 Metagenome 3300039130 *Microbiome Permanent Draft Freshwater sediment microbial communities from Alaska Lake sediment microbial communtites from St. Paul Island, Alaska - PH149_373 University of California, Santa Cruz 3300039130 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Sediment Lake sediment 57.18 -170.25 5642503 14703 6 0 10 0 0.0 Metagenome 3300024332 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 73D DOE Joint Genome Institute (JGI) 3300024332 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 269188859 613902 235 40 351 53 SRX4473120 Unrestricted 13.55 Metagenome 3300002491 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant BLVA 2012 DOE Joint Genome Institute (JGI) 3300002491 Metagenome Analysis Yes Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic microbial mat 44.534 -110.7978 193210698 349616 135 1 206 1 SRX2554544 Unrestricted 0.0 Metagenome 3300061587 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_RHK2_2_to_SEK2 DOE Joint Genome Institute (JGI) 3300061587 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.245 721132007 1163481 302 122 427 154 Unrestricted 0.0 Metagenome 3300008067 *Microbiome Permanent Draft Wastewater microbial communities from the hospital sewers Wastewater microbial communities from the hospital sewers in Singapore - Hospital 5 Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300008067 Metagenome Analysis CLC genomics workbench 8 released per JGI data release policy No Yes erinscm@nus.edu.sg Charmaine Ng No Engineered Wastewater Unclassified Unclassified Unclassified wastewater 1.3 103.8 156450033 349143 124 2 236 0 0.0 Metagenome 3300005647 *Microbiome Permanent Draft Genome and metagenome analysis of marine red algae Porphyra Marine algae microbial communities from Bantry Bay - Bantry Bay, Ireland DOE Joint Genome Institute (JGI) 3300005647 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos because they are over 3 years old Yes Yes brawley@maine.edu, Brawley@maine.edu Susan Brawley No Host-associated Algae Blade Red algae Unclassified marine 51.64 -9.71 561877768 1241792 498 22 682 36 Unrestricted 0.0 Metagenome 7000000317 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000317 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 191215504 286709 0 0 0 0 0.0 Metagenome 3300026035 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026035 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 4353717491 10066448 1546 176 2937 347 SRX2784983 Unrestricted 0.0 Metagenome 3300050222 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Warrenville, Illinois, USA - 57_721_IL_DR_1m_c3_T1_16O DOE Joint Genome Institute (JGI) 3300050222 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 41.84145 -88.2298 869000316 1366174 309 7 470 16 Restricted 17.97 Metagenome 3300047193 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2013 MS1-MC_10cm DOE Joint Genome Institute (JGI) 3300047193 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.2128 19.0232 283175085 495767 208 4 434 4 Restricted 31.07 Metagenome 3300005574 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_02_30cm DOE Joint Genome Institute (JGI) 3300005574 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 1637238623 5021222 1671 74 2837 99 SRX2727979 Unrestricted 0.0 Metagenome 3300007956 *Microbiome Permanent Draft Microbial communities from Columbia River Estuary, Oregon, USA Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459A_0.2um Oregon State University 3300007956 Metagenome Analysis megahit released per JGI data release policy Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Coastal Marine Unclassified estuary water 46.2335 -123.9142 285107516 578850 317 77 495 127 0.0 Metagenome 3300031974 *Microbiome Finished The variation of viral communities during algal boom from the coastal of Qingdao, China Marine viral communities from the Yellow sea, Qingdao, China - XG0831 Beijing Novogene Bioinformatics Technology Co., Ltd 3300031974 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes foodyqw_12@163.com Yang Qingwei No Environmental Aquatic Coastal Marine Unclassified marine 36.0767 120.3087 476574576 849673 110 3 155 1 0.0 Metagenome 3300002572 *Microbiome Permanent Draft Ridgeia piscesae microbial communities from Northeast Pacific Ocean hydrothermal vents Host-associated microbial community of the tubeworm Ridgeia piscesae from hydrothermal vents Sample -index 15 (Hulk LF) Canada's Michael Smith Genome Sciences Centre 3300002572 Metagenome Analysis released per JGI data release policy No Yes maepz@hotmail.com Maeva Perez, maeva perez No Host-associated Annelida Trophosome Intracellular endosymbionts Unclassified Ridgeia piscesae 47.95 -129.083563 259174647 662224 3 9 9 3 0.0 Metagenome 3300031392 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #917 DOE Joint Genome Institute (JGI) 3300031392 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4563 78.1898 425579146 748965 143 23 168 34 SRX5649543 Unrestricted 44.6 Metagenome 3300008125 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 763536994 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008125 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 170045009 228942 131 0 183 0 0.0 Metagenome 3300020281 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556022-ERR599116) CEA Genoscope 3300020281 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 23.4017 37.2183 702207598 1824068 329 44 542 133 0.0 Metagenome 2189573029 *Microbiome Permanent Draft Bankia setacea gill microbial communities from Puget Sound, Washington, USA Bankia setacea gill microbiome from Puget Sound WA, LANL assembly DOE Joint Genome Institute (JGI) 2189573029 Metagenome Analysis No Yes distel@oglf.org Daniel Distel, Dan Distel No Host-associated Mollusca Gills Respiratory system Unclassified Bankia setacea gill 47.85072 -122.33843 217866805 237382 9 11 27 18 0.0 Metagenome 3300038807 *Microbiome Finished Lab enrichment of oil microbial communities from petroleum reservoir, Saquarema, RJ, Brazil Lab enrichment of oil microbial communities from petroleum reservoir, Saquarema, RJ, Brazil - Saqua1 Federal University of Rio Grande do Norte 3300038807 Metagenome Analysis Spades v. 3.10.1 released by JGI data releasing policy No Yes lfagnez@ufrnet.br Lucymara Agnez-Lima No Environmental Terrestrial Unclassified Oil reservoir Unclassified oil reservoir -22.9258 -42.5076 7965593 12437 5 0 8 0 0.0 Metagenome 3300012887 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Olavius sp. 1 OAHU.JWI-45 metaG DOE Joint Genome Institute (JGI) 3300012887 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms 21.4686 -157.8184 581408138 717245 11 30 26 119 SRX7699237 Unrestricted 49.56 Metagenome 3300048821 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 S1 30-34 DOE Joint Genome Institute (JGI) 3300048821 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3532 19.0474 400997147 532612 96 3 129 1 Restricted 30.43 Metagenome 3300036493 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C6-3A DOE Joint Genome Institute (JGI) 3300036493 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 192105727 575778 318 10 623 13 SRX8803566 Unrestricted 5.15 Metagenome 3300047358 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_191016.NP1 DOE Joint Genome Institute (JGI) 3300047358 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 498305742 1021566 394 89 593 167 Unrestricted 9.96 Metagenome 3300047646 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - EG-11_D0 (version 2) DOE Joint Genome Institute (JGI) 3300047646 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3533 19.0466 340884975 657512 322 4 520 4 Restricted 0.0 Metagenome 3300017744 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 20 SPOT_SRF_2011-02-23 DOE Joint Genome Institute (JGI) 3300017744 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 342068121 807753 61 24 115 49 SRX7207129, SRX7207130 Unrestricted 0.0 Metagenome 3300028298 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_40m DOE Joint Genome Institute (JGI) 3300028298 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 409356867 808684 410 3 658 3 SRX5244745 Unrestricted 10.5 Metagenome 3300020152 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_10-13C DOE Joint Genome Institute (JGI) 3300020152 Metagenome Analysis spades v. 3.10.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.3049 -116.2547 269467853 523210 291 4 473 3 SRX3936367 Unrestricted 31.9 Metagenome 3300001178 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 DOE Joint Genome Institute (JGI) 3300001178 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 24912506 79138 121 37 197 59 SRX3312024 Unrestricted 0.0 Metagenome 3300000190 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P16 1000m DOE Joint Genome Institute (JGI) 3300000190 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 49.283333 -134.666667 141642190 317863 110 30 216 44 Unrestricted 0.0 Metagenome 3300003663 *Microbiome Permanent Draft Petroleum reservoir microbial communities from Reconcavo Basin, Brazil, analyzing oil degradation Petroleum reservoir microbial communities from Reconcavo Basin, Brazil, analyzing oil degradation - Bahia-well BA-2 Water 3300003663 Metagenome Analysis CLC released by JGI data releasing policy No Yes inatalia.sierra@gmail.com Isabel Natalia Sierra Garcia No Environmental Terrestrial Produced water Oil reservoir Unclassified Petroleum reservoir -12.2 -38.11 85965844 160152 26 0 89 0 0.0 Metagenome 3300007877 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 764892411 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007877 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 8857150 15735 10 0 17 2 SRX024149, SRX098538 0.0 Metagenome 3300040208 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 023_R1_022417 University of Maryland 3300040208 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.25747222 24.92146667 9893037 20159 20 5 13 10 0.0 Metagenome 3300002258 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP06-MB 3300002258 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300004149 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG03_land_8/20/14_0.80 DOE Joint Genome Institute (JGI) 3300004149 Metagenome Analysis MEGAHIT v. 0.2.0 revert back to private per Christa Yes Yes jbanfield@berkeley.edu, jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield, Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 577580355 1389394 1166 12 1919 38 SRX3348118 Unrestricted 0.0 Metagenome 3300010941 *Microbiome Permanent Draft Wastewater viral communities and vesicles from water purifying plant in Alicante,Spain Wastewater viral communities and vesicles from water purifying plant in Alicante,Spain - replicate Ab3 Autonomous University of Barcelona 3300010941 Metagenome Analysis SPAdes-3.8.1-Linux released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Engineered Wastewater Unclassified Industrial wastewater Unclassified wastewater 38.34 -0.48 17612964 40259 2 0 5 0 0.0 Metagenome 3300009329 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 900m, 2.7-0.2um, replicate b Georgia Genomics Facility 3300009329 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 394865577 489245 219 1 298 0 0.0 Metagenome 3300038681 *Microbiome Permanent Draft Acid mine drainage microbial biofilm communities from Richmond Mine, California, USA Acid mine drainage biofilm communities from Richmond mine site C10, Iron Mt, CA, USA - AMDC100807 University of California, Berkeley 3300038681 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 40.67542 -122.53025 15514296 22027 10 0 18 0 0.0 Metagenome 3300050313 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_77 DOE Joint Genome Institute (JGI) 3300050313 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -76.91 160.935 260758958 381646 22 20 29 27 SRX18235981 Restricted 55.22 Metagenome 3300001581 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0759 DOE Joint Genome Institute (JGI) 3300001581 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -32.81 12.77 45491639 104341 90 0 145 0 SRX1982979 Unrestricted 0.0 Metagenome 3300069576 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Mid-Atlantic, VA, USA - SCBI_008-M-20170718-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069576 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89292 -78.1395 13573787 43768 72 2 122 7 0.0 Metagenome 3300025012 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado, USA - Groundwater C1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025012 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 26083755 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.53 -107.78 379191083 704623 516 4 869 9 SRX764826, SRX1668226 Unrestricted 0.0 Metagenome 3300041475 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover leaf microbial community from Lincoln, Canterbury, New Zealand - WCL17_6 MetaG AgResearch, New Zealand, Mosgeil 3300041475 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 591914925 673968 35 597 70 785 0.0 Metagenome 3300023307 *Microbiome Permanent Draft Hydrothermal Fe-rich Mat Reference Genomes Hydrothermal Fe-rich mat microbial community from Urashima Vent Field, Mariana Arc, Pacific Ocean - 801-SC8 University of Delaware 3300023307 Metagenome Analysis metaSPAdes v. 3.10.0 Metagenomes associated with bioRxiv doi:10.1101/722066 Yes Yes mcallis@uw.edu Sean McAllister No Environmental Aquatic Hydrothermal vents Marine Microbial mats Hydrothermal Fe-rich mat 12.92235 143.64928 20042752 40295 1502 4 42 1 0.0 Metagenome 2065487000 *Microbiome Permanent Draft Human fecal microbial communities from Baylor College of Medicine, Texas, USA, mock community Human fecal microbial communities from Baylor School of Medicine, Texas, USA, mock community - bke_il_velvet Baylor College of Medicine 2065487000 Metagenome Analysis released per JGI data release policy No Yes xqin@bcm.tmc.edu Xiang Qin No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 29.7 -95.38 73365225 108323 80 0 110 0 0.0 Metagenome 3300014140 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_104 The George Washington University (GWU) 3300014140 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 97297032 173549 96 1 161 2 SRX656233 0.0 Metagenome 3300035498 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver proximal colon microbial communities from Maple Ridge, British Columbia, Canada - Beaver1Prox.Colon1 DOE Joint Genome Institute (JGI) 3300035498 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Proximal colon proximal colon 49.18 -122.54 959897242 1778224 1474 17 2277 25 SRX8344627 Unrestricted 12.22 Metagenome 3300043761 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Para, Brazil - F5-5B DOE Joint Genome Institute (JGI) 3300043761 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -3.2971 -54.9641 756656916 1907526 317 13 659 25 Unrestricted 9.7 Metagenome 3300060441 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210608_12_21 DOE Joint Genome Institute (JGI) 3300060441 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 539104236 797934 257 118 311 165 Unrestricted 47.18 Metagenome 3300031670 *Microbiome Permanent Draft Soil microbial communities from Risofladan, Vaasa, Finland Soil microbial communities from Risofladan, Vaasa, Finland - OX-3 DOE Joint Genome Institute (JGI) 3300031670 Metagenome Analysis spades v. 3.12.0 Yes Yes eva.hogfors-ronnholm@novia.fi Eva Hogfors-Ronnholm Yes Environmental Terrestrial Coastal area Soil Acid sulfate soil soil 63.0472 21.7116 1582836005 2598850 574 3 899 8 SRX5356278 Unrestricted 34.13 Metagenome 3300070983 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge, Colorado, USA - NIWO_003-M-20200708-COMP-DNA1 3300070983 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 5014380 15711 26 5 55 7 0.0 Metagenome 3300017582 *Microbiome Permanent Draft Bras del Port Julio 2014 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CR41 July 2014 University of Valencia 3300017582 Metagenome Analysis idba.1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Non marine hypersaline water 38.1922 -0.5918 46821016 139749 14 0 17 0 0.0 Metagenome 3300043053 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8CB15 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043053 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 9093770 25256 46 2 81 3 SRX8379536 Unrestricted 22.74 Metagenome 3300051239 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Butler, South Dakota, USA - 110_887_SD_DR_0cm_c2_T0_16O DOE Joint Genome Institute (JGI) 3300051239 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 45.27223 -97.8369 1158673420 2027622 409 12 777 18 Restricted 17.12 Metagenome 3300056705 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.4C.13 SIP fraction DOE Joint Genome Institute (JGI) 3300056705 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 184902869 326564 166 50 326 68 Unrestricted 14.42 Metagenome 3300020330 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001964 (ERX556097-ERR599147) CEA Genoscope 3300020330 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 14.2016 -116.696 330470859 717812 228 2 389 4 0.0 Metagenome 3300012601 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01506 Weill Cornell Medical College 3300012601 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.99 26552549 40632 21 0 26 0 SRX823382 0.0 Metagenome 3300069395 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Moab, Southern Rockies & Colorado Plateau, UT, USA - MOAB_003-M-20170522-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069395 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.24833 -109.38827 31709099 101431 119 10 277 12 0.0 Metagenome 3300012997 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Fungus gardens microbial communities from leaf cutter ant in Botucatu, State of S?o Paulo, Brazil - Atta capiguara ACBM3 DOE Joint Genome Institute (JGI) 3300012997 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Fungi Unclassified Mycelium Unclassified fungus garden -22.847 -48.434 358973568 652744 1855 29 3298 64 Unrestricted 84.04 Metagenome 3300004881 *Microbiome Permanent Draft Ecklonia radiata associated microbial communities from Long Bay, Malabar Australia Ecklonia radiata associated microbial communities from Long Bay, Malabar Australia B3 University of New South Wales 3300004881 Metagenome Analysis idba-ud released per JGI data release policy Yes Yes z.qiu@student.unsw.edu.au Zhiguang Qiu No Host-associated Algae Ectosymbionts Red algae Unclassified Ecklonia radiata associated 40261599 82042 55 28 125 45 0.0 Metagenome 3300048866 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD21 DOE Joint Genome Institute (JGI) 3300048866 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.347657 -119.2808 43125969 48138 1 2 4 4 Unrestricted 473.75 Metagenome 3300025345 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter A (PS_A) MetaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025345 Metagenome Analysis spades v. 3.11.1 Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Thermal spring 44.376 -110.69 69503882 101870 44 0 36 0 SRX2577258 Unrestricted 0.0 Metagenome 3300031888 *Microbiome Permanent Draft Testing DNA extraction from Arctic samples project reference metagenomes Permafrost active layer microbial community from Axel Heiberg Island, Nunavut, Canada - polygon interior 5cm, replicate 3 SPU Pure DNA McGill University 3300031888 Metagenome Analysis Canu v. 1.7.1 released by Isabelle Raymond-Bouchard No Yes isabelle.raymond-bouchard@mail.mcgill.ca Isabelle Raymond-Bouchard No Environmental Terrestrial Unclassified Soil Permafrost Permafrost active layer 79.416111 -90.758333 44903358 83846 0 0 0 0 0.0 Metagenome 3300005701 *Microbiome Permanent Draft Sinkhole freshwater microbial communities from Lake Huron, US Sinkhole freshwater microbial communities from Lake Huron, US, Ph40x University of Michigan 3300005701 Metagenome Analysis MIRA3 No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Sinkhole Freshwater Unclassified Sinkhole freshwater 45.19843 -83.32721 6660027 6554 2 0 2 0 0.0 Metagenome 3300026681 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1096 (SPAdes) DOE Joint Genome Institute (JGI) 3300026681 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 40.81667 -104.76667 9149151 27655 47 3 89 8 SRX3311885 Unrestricted 0.0 Metagenome 3300033076 *Microbiome Finished Gwangju Wastewater Treatment Plant Virome, South Korea Freshwater viral community from Hwang-ryong river, upstream of Jangsung wastewater treatment plant effluent, Jangsung, South Korea - HRR-up v.1 Macrogen 3300033076 Metagenome Analysis SPAdes v. 3.10.1 released by JGI data releasing policy No Yes chojc@inha.ac.kr Jang-Cheon Cho No Environmental Aquatic River Freshwater Unclassified freshwater 35.2745 126.7547 36723786 51134 0 0 0 0 0.0 Metagenome 3300017668 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - G13-01 University of Michigan 3300017668 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.39651 -85.40936 30699138 36360 7 1 11 3 0.0 Metagenome 3300006119 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Jul07 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006119 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 275296286 766618 163 100 280 206 SRX2565524 Unrestricted 0.0 Metagenome 3300017615 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - W11-03 University of Michigan 3300017615 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Fresh Water 42.39757 -85.38536 8798851 9769 2 2 9 1 0.0 Metagenome 3300002453 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Coal Bed microbial communities from Alberta -Trident_1560D McGill University 3300002453 Metagenome Analysis released per JGI data release policy No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Biotransformation Unclassified Microbial solubilization of coal Unclassified Hydrocarbon resource environments 54.16 -114.71 0 0 0 0 0 0 0.0 Metagenome 3300025270 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025270 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 43.49 7.9 270358004 548713 103 0 114 1 SRX2753835 Unrestricted 0.0 Metagenome 3300040403 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONZ_001-M-20170710-COMP-DNA1 Battelle Memorial Institute 3300040403 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.10077 -96.56309 5354066 15964 50 11 65 15 0.0 Metagenome 3300027128 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepA_8d DOE Joint Genome Institute (JGI) 3300027128 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 135166966 237877 114 14 188 21 SRX5245211 Unrestricted 13.23 Metagenome 3300010237 *Microbiome Permanent Draft Terrestrial oil reservoir microbial communities from Alaska Terrestrial oil reservoir microbial community from Ivishak Formation, Alaska - I2 Yale Center for Genome Analysis 3300010237 Metagenome Analysis idba-ud released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis Yes 26787827 Environmental Terrestrial Unclassified Oil reservoir Unclassified produced fluid 70.4 -148.7 1260996402 6202418 2107 288 2902 931 0.0 Metagenome 3300034056 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A3A4.3 DOE Joint Genome Institute (JGI) 3300034056 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 198081809 581434 371 4 714 6 SRX7658843 Unrestricted 6.66 Metagenome 3300003209 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07K1-12 DOE Joint Genome Institute (JGI) 3300003209 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 168996 560 21 1 51 3 SRX2576174 Unrestricted 0.0 Metagenome 3300022831 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - IR.F.S.T100 DOE Joint Genome Institute (JGI) 3300022831 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat, Wetlands Soil Mire, Peat soil 68.3533 19.0466 63875413 169428 131 5 265 4 SRX4415255 Restricted 16.03 Metagenome 3300013920 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01388 Weill Cornell Medical College 3300013920 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.63 -74.0 15775051 25386 12 0 16 0 SRX823328 0.0 Metagenome 3300013495 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00998 Weill Cornell Medical College 3300013495 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.59 -73.78 23932682 41270 15 0 24 0 SRX822960 0.0 Metagenome 3300045603 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_2_A DOE Joint Genome Institute (JGI) 3300045603 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 156903482 185585 102 1 119 2 Unrestricted 112.99 Metagenome 3300070627 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_070-O-20200713-COMP-DNA1 3300070627 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 31744866 85391 74 5 133 20 0.0 Metagenome 3300022517 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 10-14 DOE Joint Genome Institute (JGI) 3300022517 Metagenome Analysis spades v. 3.11.1-check Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 46253604 133767 111 2 197 7 SRX4415324, SRX8127993 Unrestricted 0.0 Metagenome 3300048903 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled DOE Joint Genome Institute (JGI) 3300048903 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Rhizoplane Roots Unclassified Rhizoplane soil 42.40581 -85.40228 1646850123 2870271 633 107 1025 138 Unrestricted 15.78 Metagenome 3300013200 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100409 University of Pennsylvania 3300013200 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 11086686 19158 5 0 15 0 SRX756248 0.0 Metagenome 3300030674 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Indian Ocean - SGB1 Michigan State University 3300030674 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 12.496667 47.075 67540796 197977 5 0 30 1 0.0 Metagenome 3300029227 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002670-43 Beijing Genomics Institute (BGI) 3300029227 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 152057865 193517 126 0 195 0 0.0 Metagenome 3300007295 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159814214 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007295 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 167660181 241147 130 0 189 0 0.0 Metagenome 3300070291 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Florida, USA - DSNY_043-M-20180823-COMP-DNA1 3300070291 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 12426685 37297 58 8 97 7 0.0 Metagenome 3300017409 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_12SEP2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017409 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 181467304 341927 57 77 93 122 SRX3926898 Unrestricted 8.77 Metagenome 3300037091 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-3-X1 DOE Joint Genome Institute (JGI) 3300037091 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0467 407647215 744292 261 0 461 0 SRX8138097 Unrestricted 10.64 Metagenome 3300013624 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100616 University of Pennsylvania 3300013624 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4692855 13385 12 0 18 0 SRX756478 0.0 Metagenome 3300034171 *Microbiome Permanent Draft Extreme environments viral communities from various locations Cryopeg brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - CB1 2018 DOE Joint Genome Institute (JGI) 3300034171 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Coastal Marine Unclassified cryopeg brine 71.2944 -156.7153 338896896 557479 176 1 204 6 SRX7519962, SRX7519961 Unrestricted 0.0 Metagenome 3300051197 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water microbial communities from Sandhills, Nebraska, United States - NSL_Border_2018_MMG DOE Joint Genome Institute (JGI) 3300051197 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.79185 -102.53404 1001212414 1478822 341 14 455 10 Unrestricted 49.5 Metagenome 3300043726 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - II_P72_A200 DOE Joint Genome Institute (JGI) 3300043726 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.1686 -62.8317 770688648 2095347 531 8 1045 7 Unrestricted 7.59 Metagenome 3300024527 *Microbiome Permanent Draft bacteria associated with phytoplankton bloom Marine bacterial communities from Xiamen coast, China - E7 State Key Laboratory of Marine Environmental Sciences, Xiamen University 3300024527 Metagenome Analysis SOAP v. 3.3 released by JGI data releasing policy No Yes kt6mail@gmail.com Kai Tang No Environmental Aquatic Coastal Marine Sediment marine 24.5 118.2 813676993 2641458 322 59 637 138 0.0 Metagenome 3300007642 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1548A-3 DOE Joint Genome Institute (JGI) 3300007642 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2319 -123.8812 300747601 580388 332 33 467 58 SRX2753629 Unrestricted 0.0 Metagenome 3300037169 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 S1 10-14 DOE Joint Genome Institute (JGI) 3300037169 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3531 19.0474 692687853 1207381 223 7 308 10 SRX8144474 Unrestricted 16.6 Metagenome 3300000361 *Microbiome Draft Alkaline sediment microbial communities from Soda lakes and Soda Solonchak soils Alkaline brine water microbial communities from Soda crystalizer, Kulunda Steppe, Russia - 6KL_011_BRINE DOE Joint Genome Institute (JGI) 3300000361 Metagenome Analysis released based on JGI ITS Yes Yes g.muijzer@uva.nl Gerard Muyzer No Environmental Aquatic Alkaline Non-marine Saline and Alkaline Sediment Alkaline brine water 51.64 79.73 246640645 479001 126 5 229 6 Unrestricted 0.0 Metagenome 3300031998 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_03 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031998 Metagenome Analysis spades v. 3.12.0 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -19.6574 146.8351 4493135387 9104420 5841 71 9275 103 SRX5787114, SRX5787115 Unrestricted 0.0 Metagenome 3300042395 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME19Aug2015-rr0870 DOE Joint Genome Institute (JGI) 3300042395 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 642755050 984181 292 71 442 114 Unrestricted 15.58 Metagenome 3300055074 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_4-s115 day 154 DOE Joint Genome Institute (JGI) 3300055074 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1491137304 2162028 215 146 305 156 Unrestricted 41.67 Metagenome 3300039288 *Microbiome Permanent Draft Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada - high-flow bush EMw8 Dalhousie University 3300039288 Metagenome Analysis Megahit v. 1.2.8 released by JGI data releasing policy No Yes smurdock@uvic.ca Sheryl Murdock No Environmental Aquatic Hydrothermal vents Marine Tubeworm bush tubeworm bush 47.9495 -129.0985 647313843 1231567 703 11 1013 22 0.0 Metagenome 3300056732 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.18C.10 SIP fraction DOE Joint Genome Institute (JGI) 3300056732 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 138962259 272704 77 4 114 5 Unrestricted 11.19 Metagenome 3300046487 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvCe-C(3) 20-24 DOE Joint Genome Institute (JGI) 3300046487 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0434 624715927 975625 254 3 388 5 Restricted 12.41 Metagenome 3300029036 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 265_M Beijing Genomics Institute (BGI) 3300029036 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 125070305 202252 145 1 276 2 ERX491044 0.0 Metagenome 3300026807 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A5-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300026807 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 30319618 97042 124 6 232 7 SRX1991142 Unrestricted 0.0 Metagenome 3300005598 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_13_30cm DOE Joint Genome Institute (JGI) 3300005598 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 3477973195 10033006 3140 84 5185 134 SRX2728466 Unrestricted 0.0 Metagenome 3300045975 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P11SSC1_190916_f DOE Joint Genome Institute (JGI) 3300045975 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 1557919744 2353828 414 1 650 0 SRX20650702 Unrestricted 12.94 Metagenome 3300027812 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027812 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 51.62 -128.09 1051765632 2151852 354 20 643 39 SRX2575213 Unrestricted 0.0 Metagenome 3300001194 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from University of Liverpool Illum_standard_IDBA-UD University of Liverpool 3300001194 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 23884905 35476 67 0 106 0 0.0 Metagenome 3300028274 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_200m DOE Joint Genome Institute (JGI) 3300028274 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified marine 48.6 -123.5 354608263 637184 280 1 437 4 SRX5244628 Unrestricted 34.68 Metagenome 3300022757 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA1 Version 2 University of New South Wales 3300022757 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 41878770 60132 29 3 37 1 0.0 Metagenome 3300028493 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen5, Rep 2 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028493 Metagenome Analysis spades v. 3.11.1 No Yes xpeng@seoe.sc.edu; momalley@engineering.ucsb.edu Xuefeng (Nick) Peng; Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 11596682 14972 26 0 22 0 SRX5645578 Unrestricted 0.0 Metagenome 3300020039 *Microbiome Permanent Draft Rumen microbial communities from healthy moose, Palmer, Alaska Rumen fluid microbial communities from healthy moose, Palmer, Alaska- post 0.2 um filtrate Viral contigs Ohio State University 3300020039 Metagenome Analysis IDBA-UD released by Lindsey Solden No Yes solden.2@osu.edu Lindsey Solden Yes 30356154 Host-associated Mammals Stomach Digestive system Rumen Moose rumen 61.5997 -148.1128 20041029 29128 0 0 0 0 0.0 Metagenome 3300005077 *Microbiome Permanent Draft Water filled karst sinkhole microbial communities from Little Salt Spring, North Port, Florida Water filled karst sinkhole microbial communities from Little Salt Spring, North Port, Florida - Phototrophic mat 2014 Pennsylvania State University 3300005077 Metagenome Analysis IDBA released per PI No Yes thamilton@chemistry.montana.edu, trinitylh@gmail.com Trinity Hamilton, Trinity Hamilton No Environmental Aquatic Sinkhole Freshwater Microbial mats Sinkhole 27.074722 -82.233333 7 746755285 1183224 692 6 1002 5 0.0 Metagenome 3300038470 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Sediment microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_West_5 DOE Joint Genome Institute (JGI) 3300038470 Metagenome Analysis metaspades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Wetlands Marine Sediment sediment 26.469 -80.4434 2061176892 3239198 755 6 1292 11 SRX9405892 Unrestricted 13.63 Metagenome 3300022438 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Lake Baghdad, Rottnest Island (WA - Australia) - LBBM3 JM18 AGRF 3300022438 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.994794 115.523776 57703860 100856 43 3 64 5 0.0 Metagenome 3300011641 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00744 Weill Cornell Medical College 3300011641 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.71 -74.0 34614920 44180 15 0 28 0 SRX822711 0.0 Metagenome 3300049497 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC26 DOE Joint Genome Institute (JGI) 3300049497 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 19362330 59660 86 3 232 6 Unrestricted 24.77 Metagenome 3300037187 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_08D_17 DOE Joint Genome Institute (JGI) 3300037187 Metagenome Analysis metaspades v. 3.13.0 Yes Yes swr38@rutgers.edu; barkay@aesop.rutgers.edu Spencer W. Roth; Tamar Barkay No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9123 -147.839 857845694 1795545 381 16 666 24 SRX8229325 Unrestricted 7.97 Metagenome 3300061144 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IF1SW PMA-treated Jet Propulsion Laboratory, California Institute of Technology 3300061144 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 65964409 97489 13 10 19 26 SRX2249371, SRX3808536, SRX2249370, SRX3808526 0.0 Metagenome 3300026662 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK08-B (SPAdes) DOE Joint Genome Institute (JGI) 3300026662 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.4 6536758 21536 64 2 120 6 SRX1991374 Unrestricted 0.0 Metagenome 3300006427 *Microbiome Permanent Draft Microbial communities of the formation fluids of a supercritical CO2 deposit from Well 10, McElmo Dome, Colorado Microbial communities of the formation fluids of a supercritical CO2 deposit from McElmo Dome, Colorado Massachusetts Institute of Technology 3300006427 Metagenome Analysis CLC Genomics Workbench released per submitter's request No Yes janelle@mit.edu Janelle Thompson No Environmental Terrestrial Unclassified Deep subsurface Unclassified supercritical CO2 deposit 39.7640021 -105.1353074 10773225 12085 6 0 8 0 0.0 Metagenome 3300000874 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and P2 (2) DOE Joint Genome Institute (JGI) 3300000874 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 32466359 53832 31 0 58 0 SRX3311647 Unrestricted 0.0 Metagenome 3300030309 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from adenoma patient in Toronto, Canada - MG100192 University of Michigan 3300030309 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 43.65 -79.38 19952802 36071 40 0 66 0 0.0 Metagenome 3300025728 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025728 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 604791559 1058436 502 18 685 35 SRX3203331 Unrestricted 0.0 Metagenome 3300035315 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Eunicella gazella from Algarve, Portugal - EG18H Euk Molecular Research LP (MR DNA) 3300035315 Metagenome Analysis Metawrap workflow v. 1.0.5 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 514066 344 0 2 0 2 0.0 Metagenome 3300055536 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.17W.16 SIP fraction DOE Joint Genome Institute (JGI) 3300055536 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 221418378 368710 141 30 271 49 Unrestricted 11.25 Metagenome 3300007101 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Stylissa sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina ""control"", st51ic" University of New South Wales 3300007101 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Stylissa sp. (marine sponge) -9.828217 150.820517 101357115 248855 13 8 24 13 0.0 Metagenome 3300003786 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius vacuus BELIZE.2 DOE Joint Genome Institute (JGI) 3300003786 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 398664147 991802 38 3 78 4 SRX3340721 Unrestricted 0.0 Metagenome 3300029574 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 063_3_14_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029574 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 165602087 231138 203 0 281 0 0.0 Metagenome 3300012508 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510 DOE Joint Genome Institute (JGI) 3300012508 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 155164195 420020 294 21 564 28 SRX3527359 Unrestricted 0.0 Metagenome 3300040310 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_006-M-20160822-COMP-DNA1 Battelle Memorial Institute 3300040310 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 5533243 16988 47 5 71 9 0.0 Metagenome 3300038588 *Microbiome Permanent Draft Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China - KO3 v2 Sun Yat-Sen University 3300038588 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy No Yes yuxiaoli92@163.com Xiaoli Yu No Environmental Aquatic Intertidal zone Marine Mangrove sediment mangrove sediment 23.45 116.43 172804492 231790 67 2 107 4 0.0 Metagenome 3300069465 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_002-M-20140708-COMP-DNA1 re-annotation Argonne National Laboratory 3300069465 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 1613574 4876 33 3 68 5 ERX2134057 0.0 Metagenome 3300041566 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_45 MetaG AgResearch, New Zealand, Mosgeil 3300041566 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1641388923 3537653 348 37 1251 59 0.0 Metagenome 3300027485 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A3w-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300027485 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 58205748 183137 129 2 262 2 SRX2576219 Unrestricted 0.0 Metagenome 3300007313 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 158883629 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007313 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 36605227 38210 30 0 33 0 0.0 Metagenome 3300011102 *Microbiome Permanent Draft Composted filter cake microbial communities from Nova Europa, Brazil, from a cane sugar milling plant Composted filter cake microbial communities from Nova Europa, Brazil, from a cane sugar milling plant re-assembly Sao Paulo State University 3300011102 Metagenome Analysis IDBA-UD v.1.1.1 released by JGI data releasing policy Yes Yes wpomori@hotmail.com Wellington Omori No Engineered Solid waste Composting Agricultural waste Sugarcane filter cake Filter cake produced in cane sugar milling plant -21.818963 -48.614275 7 270989624 478297 265 30 384 46 0.0 Metagenome 3300044223 *Microbiome Permanent Draft Simulated microbial communities of Trichodesmium and heterotrophic bacteria from Gulf of Aqaba, Eilat, Israel Simulated microbial communities of Trichodesmium and heterotrophic bacteria from Gulf of Aqaba, Eilat, Israel - Tfinal+54FeOx-1 DOE Joint Genome Institute (JGI) 3300044223 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes yeala.shaked@mail.huji.ac.il Yeala Shaked No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified simulated 29.501 34.917 205974460 259087 99 12 125 13 Unrestricted 878.7 Metagenome 3300046090 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_11 DOE Joint Genome Institute (JGI) 3300046090 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9236 -106.9499 201155602 611242 641 26 1241 30 Unrestricted 0.0 Metagenome 3300054070 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin06_10_metaG re-annotation DOE Joint Genome Institute (JGI) 3300054070 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1087516388 2284479 544 89 971 112 SRX3292992 0.0 Metagenome 3300039306 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Phormidesmis sp. WJT24-NPBG8 and co-occurring heterotrophs from desert soil from Joshua Tree National Park, Colorado Desert, CA, United States - 20190326_41F DOE Joint Genome Institute (JGI) 3300039306 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Desert Soil Unclassified Desert soil 33.763 -115.7961 63604562 70427 33 0 32 0 SRX9640413 Unrestricted 255.25 Metagenome 3300042034 *Microbiome Permanent Draft Mollusc gills microbial communities from various hydrothermal vent in Atlantic Ocean Mollusc gills microbial communities from Semeiov-Ash lighthouse hydrothermal vent, Atlantic Ocean - BputSym_Se-AL_1_1115A Max Planck Institute for Marine Microbiology 3300042034 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 13.513467 -44.963133 12822085 16724 3 2 5 1 ERX3367188 0.0 Metagenome 3300013912 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00876 Weill Cornell Medical College 3300013912 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.69 -73.84 7306037 13934 5 0 8 0 SRX822842 0.0 Metagenome 3300046774 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mississippi River, Missouri, USA - NASQAN2010_172 DOE Joint Genome Institute (JGI) 3300046774 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 37.2164 -89.4675 13807510 44273 60 13 112 24 Unrestricted 0.0 Metagenome 3300069418 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_031-M-20170710-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069418 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 18533529 57216 66 8 113 14 0.0 Metagenome 3300045032 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Plains ecozone, Canada - Lake 04-611 Genome Quebec 3300045032 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 60.063822 -116.847789 1145935227 2557687 568 121 860 229 0.0 Metagenome 3300052935 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Wyoming, USA - M_H1_S1 DOE Joint Genome Institute (JGI) 3300052935 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 41.10766 -106.15334 398088060 627362 177 55 245 78 Unrestricted 44.15 Metagenome 3300001407 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 210 shallow-092012 DOE Joint Genome Institute (JGI) 3300001407 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 49110769 111653 76 2 135 3 SRX1987660 Unrestricted 0.0 Metagenome 3300061211 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Great Basin, Onaqui, Utah, USA - ONAQ_004-M-20210525-comp-1 DOE Joint Genome Institute (JGI) 3300061211 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Shrubland Soil Unclassified Terrestrial soil 40.185938 -112.47248 1245617870 2024451 541 19 983 18 Unrestricted 19.71 Metagenome 3300001688 *Microbiome Permanent Draft Activated sludge microbial communities from the University of Illinois, USA, from bioreactors seeded with cattle waste Activated sludge microbial communities from the University of Illinois, USA - seeded with cattle waste 3300001688 Metagenome Analysis IDBA-UD released per JGI data releasing policy No Yes jrsieber@illinois.edu Jessica Sieber No Engineered Wastewater Dissolved organics (anaerobic) Nutrient removal Activated sludge Activated sludge 40.103885 -88.225087 451393249 467294 121 1 122 0 0.0 Metagenome 3300044903 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 242-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044903 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9614 -107.0293 597212652 1823632 758 55 1343 79 Unrestricted 6.69 Metagenome 3300009012 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_16_40cm DOE Joint Genome Institute (JGI) 3300009012 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 8168811103 18023816 5222 44 8571 73 SRX2729621 Unrestricted 0.0 Metagenome 3300043047 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5NT15 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043047 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 7936117 23868 87 3 124 6 SRX8379436 Unrestricted 30.23 Metagenome 3300044675 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME29Jun2012-rr0975 DOE Joint Genome Institute (JGI) 3300044675 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1012780532 1559859 283 36 398 55 Unrestricted 19.67 Metagenome 3300056695 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.5W.6 SIP fraction DOE Joint Genome Institute (JGI) 3300056695 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 132680285 264323 95 4 163 3 Unrestricted 21.31 Metagenome 3300012791 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - DID2925_E24_Xylan MG DOE Joint Genome Institute (JGI) 3300012791 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 10926255 12253 15 0 16 0 SRX3564844 Unrestricted 0.0 Metagenome 3300028527 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_07AUG2017_LD1 DOE Joint Genome Institute (JGI) 3300028527 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 52302035 98871 35 55 38 72 SRX5345840 Unrestricted 22.39 Metagenome 3300015336 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12JUL2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015336 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 214307302 367005 10 95 9 192 SRX3923450 Unrestricted 7.67 Metagenome 3300042213 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D118_2 DOE Joint Genome Institute (JGI) 3300042213 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 137069358 204384 101 7 148 10 Unrestricted 83.53 Metagenome 3300027539 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Nasutitermes corniger midgut segment microbial community from laboratory colony in Florida, USA - Nc150M (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027539 Metagenome Analysis spades v. 3.11.1 Yes Yes brune@mpi-marburg.mpg.de Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 26.0625 -80.2332 517498005 672525 5 6 8 3 SRX2553508 Unrestricted 0.0 Metagenome 3300043655 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 377-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043655 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.991 -107.0608 816367551 2234570 659 37 1215 71 Unrestricted 6.79 Metagenome 7000000530 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765560005 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000530 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 6048131 11354 0 0 0 0 0.0 Metagenome 3300049523 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J25_B_7_control DOE Joint Genome Institute (JGI) 3300049523 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 166665048 394036 419 35 747 51 Unrestricted 12.17 Metagenome 3300057190 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Michigan, United States - E2019-0030 DOE Joint Genome Institute (JGI) 3300057190 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.98 -83.41416667 437279556 862766 293 189 477 282 Unrestricted 18.95 Metagenome 3300030708 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_034 - TARA_R100000005 CEA Genoscope 3300030708 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 18.3967 39.875 175951803 345631 28 1 42 6 0.0 Metagenome 3300025329 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-G (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025329 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.299 -156.61 6261842 19895 20 0 38 2 SRX2900872 Unrestricted 0.0 Metagenome 3300024493 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from Nasutitermes sp. lab. nest, Belvaux, Luxembourg - LM_1_8 metagenomics University of Luxembourg 3300024493 Metagenome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 49.4915 5.9784 177484645 239658 16 1 24 1 0.0 Metagenome 3300069537 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Taiga, AK, USA - HEAL_005-O-20160804-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069537 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.87569 -149.21334 45444385 133354 83 10 165 12 0.0 Metagenome 3300003945 *Microbiome Permanent Draft Sulfidic tide pool sediment microbial communities from Sippewissett Salt Marsh, Massachusetts, USA Achromatium Mini-Metagenome 1 Cornell University 3300003945 Metagenome Analysis jigsaw released per JGI data release policy No Yes verenasalman@gmail.com, vcarvalh@mpi-bremen.de Verena Salman, Verena Carvalho No Environmental Aquatic Intertidal zone Marine Sediment Sulfidic tide pool sediment 41.575804 -70.639768 8.2 7614708 7700 2 0 2 0 0.0 Metagenome 3300031180 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Sorghum-adapted microbial communities enriched on wild type (WT) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - WT_Day14_8 DOE Joint Genome Institute (JGI) 3300031180 Metagenome Analysis spades v. 3.12.0 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 115899259 165886 135 0 127 0 SRX5661293 Unrestricted 128.53 Metagenome 3300037842 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI146_2018_oct_120m DOE Joint Genome Institute (JGI) 3300037842 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 623866674 1289291 368 64 643 83 SRX9402165 Unrestricted 15.04 Metagenome 3300027820 *Microbiome Permanent Draft Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027820 Metagenome Analysis spades v. 3.11.1 Yes Yes jeremy.rich@maine.edu Jeremy Rich No Environmental Aquatic Coastal Marine Sediment Marine sediment 1163274149 2384838 689 42 1154 82 SRX2837948 Unrestricted 0.0 Metagenome 3300007836 *Microbiome Permanent Draft Clones from fosmidial library constructed using mangrove sediment Mangrove sediment microbial communities from Bertioga, Sao Paulo, Brazil - Clones from fosmid library, F10_contig1 Molecular Research LP (MR DNA) 3300007836 Metagenome Analysis IDBA released per JGI data release policy No Yes luc.g.cabral@gmail.com Luc?lia Cabral, Lucelia Cabral No Environmental Aquatic Unclassified Sediment Unclassified sediment -23.8553 -46.1394 34212 29 0 0 0 0 0.0 Metagenome 3300008283 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 638754422 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008283 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 133488231 185124 115 0 150 0 0.0 Metagenome 7000000454 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764224817 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000454 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 56621383 113543 0 0 0 0 0.0 Metagenome 3300026723 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized - NN357 (SPAdes) DOE Joint Genome Institute (JGI) 3300026723 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 19484778 61492 63 5 105 7 SRX1986738 Unrestricted 0.0 Metagenome 3300023254 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T75 DOE Joint Genome Institute (JGI) 3300023254 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 200142313 405190 221 1 421 1 SRX4415308, SRX7705660 Unrestricted 0.0 Metagenome 3300036363 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C3-3A DOE Joint Genome Institute (JGI) 3300036363 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 54988441 176668 153 7 270 5 SRX8817139 Unrestricted 4.27 Metagenome 3300003065 *Microbiome Permanent Draft Rice paddy soil viral communities from Daejeon City, South Korea Soil viral communities from Rice paddy at Daejon City Korea Research Institute of Bioscience and Biotechnology 3300003065 Metagenome Analysis Made public because these are downloaded from Genbank No Yes baejw@kribb.re.kr Bae JW Yes 18708511 Environmental Terrestrial Unclassified Soil Agricultural land Rice paddy soil 36.3875 127.3392 611313 1249 0 0 0 0 0.0 Metagenome 3300040019 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, Pacific Southwest, CA, USA - SJER_004-M-20170313-COMP-DNA1 Battelle Memorial Institute 3300040019 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.10878 -119.73228 15217887 48222 188 22 334 24 0.0 Metagenome 3300000491 *Microbiome Permanent Draft Lentic microbial communities from White Lake grasslands, BC, Canada Lentic microbial communities from White Lake grasslands, BC, Canada Pennsylvania State University 3300000491 Metagenome Analysis released per PI No Yes tlh42@psu.edu Trinity No Environmental Aquatic Lentic Freshwater Unclassified Lentic 49.2833 -119.5833 13912511 43897 34 0 59 3 0.0 Metagenome 3300042465 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21May2001-rd0113 DOE Joint Genome Institute (JGI) 3300042465 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 713835298 1160630 185 29 242 35 Unrestricted 22.45 Metagenome 3300026171 *Microbiome Permanent Draft Utah desert microbiome from environmental samples near Hanksville, Utah, USA Rock biofilm microbial communities from Utah desert near Hanksville, Utah, USA - E9 McGill University 3300026171 Metagenome Analysis canu v. 1.7 released by Catherine Maggiori No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Terrestrial Unclassified Soil Desert Rock biofilm 38.41595572 -110.78449087 5186401 7437 0 0 1 0 0.0 Metagenome 3300011135 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01361 Weill Cornell Medical College 3300011135 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.85 -73.82 26952610 38339 14 0 23 0 SRX823301 0.0 Metagenome 3300009345 *Microbiome Permanent Draft Salt marsh microbial communities from Little Sippewissett, Woods Hole, MA that are anoxygenic and photosynthetic Anoxygenic and phototrophic microbial communities from Little Sippewissett salt marsh, Woods Hole, MA - SCQ2a longer assembly SCB2a_77 Marine Biological Laboratory 3300009345 Metagenome Analysis Spades released per JGI data release policy No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Intertidal zone Marine Salt marsh marine 41.5758508 -70.635807 117281840 141855 19 0 21 0 0.0 Metagenome 2077657017 *Microbiome Draft Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA Microbial communities from bioreactor (seeded with anoxic lake sediment) at LBNL, California, USA - Biofuel metagenome 1 version 1 (version 2) DOE Joint Genome Institute (JGI) 2077657017 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes hrbeller@lbl.gov Harry Beller Yes 29556105 Engineered Bioreactor Unclassified Anaerobic Unclassified Bioreactor 37.8754404 -122.2477251 191792649 441277 0 0 0 0 Unrestricted 0.0 Metagenome 3300020262 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000097 (ERX556100-ERR599172) CEA Genoscope 3300020262 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 18.735 66.3895 241056537 531784 213 2 387 3 0.0 Metagenome 3300025583 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWC_D1 (SPAdes) DOE Joint Genome Institute (JGI) 3300025583 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.015041 -122.501831 326450510 585464 229 3 345 4 SRX7142756 Unrestricted 0.0 Metagenome 3300004125 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300004125 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 499168464 1455086 430 122 804 289 Unrestricted 0.0 Metagenome 3300045793 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - P1-R3-B DOE Joint Genome Institute (JGI) 3300045793 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.355 19.0438 349543735 791446 178 34 346 56 Unrestricted 6.73 Metagenome 3300011548 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00610 Weill Cornell Medical College 3300011548 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.79 -73.94 24898638 34025 14 0 22 0 SRX822577 0.0 Metagenome 3300045005 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_82m_2014 DOE Joint Genome Institute (JGI) 3300045005 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 520729624 899018 268 21 430 32 Unrestricted 34.61 Metagenome 3300052902 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Colorado, USA - CP_L2_S1 DOE Joint Genome Institute (JGI) 3300052902 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 39.93832 -105.96155 317826563 591312 396 44 799 76 Unrestricted 27.46 Metagenome 3300015211 *Microbiome Permanent Draft Regolith bacterial community from Guaba Ridge, Luquillo Mountains, Puerto Rico Regolith bacterial community from Guaba Ridge, Luquillo Mountains, Puerto Rico - A780-785 University of Wisconsin, Madison 3300015211 Metagenome Analysis MetaSPAdes v3.10 released by JGI data releasing policy Yes Yes snapieralski@wisc.edu Stephanie Napieralski No Environmental Terrestrial Unclassified Geologic Unclassified regolith 18.28 -65.79 658679640 1432589 212 6 405 13 0.0 Metagenome 3300008607 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 686765762 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008607 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 99602943 136158 62 0 80 0 0.0 Metagenome 3300008488 *Microbiome Permanent Draft Wastewater microbial communities from the hospital sewers Wastewater microbial communities from the hospital sewers in Singapore - Hospital 1 Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300008488 Metagenome Analysis CLC genomics workbench 8 released per JGI data release policy No Yes erinscm@nus.edu.sg Charmaine Ng No Engineered Wastewater Unclassified Unclassified Unclassified wastewater 1.3 103.8 144015912 329801 91 3 208 4 0.0 Metagenome 3300005227 *Microbiome Permanent Draft Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich Groundwater microbial communities from New Jersey, USA, that are dichloromethane rich - 01I-101 University of Cincinnati 3300005227 Metagenome Analysis Velvet v. 0.7.57 released per JGI data release policy No Yes rlamendella@lbl.gov Regina Lamendella No Environmental Aquatic Groundwater Freshwater Contaminated Groundwater 40.0 -74.5 0 0 0 0 0 0 0.0 Metagenome 3300044821 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Soil microbial communities from peatland in Alberta, Canada - SB-91-mossy 0-10 cm DOE Joint Genome Institute (JGI) 3300044821 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4732 -114.8724 681401109 1141017 316 37 564 52 Unrestricted 12.84 Metagenome 3300012142 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT499_2 DOE Joint Genome Institute (JGI) 3300012142 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9231 -106.9513 126955299 313278 213 25 493 56 SRX3368873 Unrestricted 0.0 Metagenome 3300049367 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC35 DOE Joint Genome Institute (JGI) 3300049367 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 79925265 212300 246 5 550 7 Unrestricted 29.6 Metagenome 3300010276 *Microbiome Permanent Draft Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 15_59_3.3_214_A2 metaG DOE Joint Genome Institute (JGI) 3300010276 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes Steve.Brown@lanzatech.com Steven Brown Yes 30202438 Engineered Bioreactor Anaerobic Semi-continuous Digestate Switchgrass degrading 43.726 -72.1429 258359976 414327 536 1 689 3 SRX3291914 Unrestricted 0.0 Metagenome 3300028024 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - MeOH1_35cm_T3_179 DOE Joint Genome Institute (JGI) 3300028024 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sandy soil 49.2598372 -123.2459363 181711415 234686 58 2 74 1 SRX5248026 Unrestricted 162.18 Metagenome 3300014848 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS881 IDBA reassembly (rename) Marine Biological Laboratory 3300014848 Metagenome Analysis IDBA_UD released by JGI data releasing policy No Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow diffuse flow hydrothermal vent 18.375 -81.797 65792702 82323 30 0 41 0 0.0 Metagenome 3300005907 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 1 Metagenome VIRRA1 DOE Joint Genome Institute (JGI) 3300005907 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli, Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.8136 77.9341 15563824 31599 11 0 21 0 SRX2839852 Unrestricted 0.0 Metagenome 3300046399 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA073-CHU DOE Joint Genome Institute (JGI) 3300046399 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6365 -83.4956 672826209 1818974 473 18 924 41 Unrestricted 8.03 Metagenome 7000000606 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human subgingival plaque microbial communities from NIH, USA - visit 2, subject 763961826 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000606 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human 39.0042816 -77.1012173 93860530 182244 0 0 0 0 0.0 Metagenome 3300005691 *Microbiome Finished Mouse gut microbial communities from Washington University in St Louis, Missouri, USA, of lean and obese mice Mouse gut microbial communities from Washington University in St Louis, Missouri, USA - Lean Mouse 1 Gut Metagenome Washington University in St. Louis 3300005691 Metagenome Analysis Newbler No Yes jgordon@wustl.edu Human Gut Community Users Yes 17183312 Host-associated Mammals Large intestine Digestive system Cecum Mouse gut 38.63055 -90.194664 2234664 4451 0 0 0 0 0.0 Metagenome 3300043544 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNPCB070 DOE Joint Genome Institute (JGI) 3300043544 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes viola.krukenberg@montana.edu Viola Krukenberg No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.5671 -110.8056 573178348 776872 362 1 449 2 Unrestricted 70.43 Metagenome 3300024298 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepC_8d DOE Joint Genome Institute (JGI) 3300024298 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 210786338 457575 216 9 343 27 SRX4547359 Unrestricted 12.98 Metagenome 3300049016 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - D2_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049016 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 259161908 617665 404 12 766 24 Unrestricted 0.0 Metagenome 3300046501 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere DOE Joint Genome Institute (JGI) 3300046501 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.588 -123.1929 756841465 1144309 285 75 401 102 Unrestricted 20.82 Metagenome 3300031507 *Microbiome Permanent Draft Soil and ectomycorrhiza microbial communities from Populus trichocarpa stands in riparian zones in the Pacific Northwest, United States Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM DOE Joint Genome Institute (JGI) 3300031507 Metagenome Analysis spades v. 3.12.0 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Plants Unclassified Roots Unclassified ectomycorrhiza 46.0356 -122.86 2142592313 3511448 396 98 627 130 SRX5650620 Unrestricted 21.27 Metagenome 3300002447 *Microbiome Permanent Draft Freshwater and sediment microbial communities from a dead zone in Lake Erie, USA Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome DOE Joint Genome Institute (JGI) 3300002447 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes rmmckay@bgsu.edu Robert McKay, Robert M. McKay No Environmental Aquatic Lentic Freshwater Unclassified Freshwater and sediment 43.933506 -78.003845 625786594 1402150 387 280 650 508 SRX1991827 Unrestricted 0.0 Metagenome 3300013719 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01005 Weill Cornell Medical College 3300013719 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.59 -73.81 22333905 34648 18 0 21 1 SRX822967 0.0 Metagenome 3300038723 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - BAL3 Michigan State University 3300038723 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 13.296667 -104.801667 75513200 212908 1 0 12 1 SRX1162764 0.0 Metagenome 3300028363 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #2 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028363 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 98124449 186206 114 21 179 33 SRX3241668 Unrestricted 0.0 Metagenome 3300025020 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-23 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025020 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 434125281 756987 394 9 592 12 SRX3198638 Unrestricted 0.0 Metagenome 3300035042 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B4.1_Sample4.Rodeo1.Well665 DOE Joint Genome Institute (JGI) 3300035042 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 136224424 202913 145 0 169 0 SRX8353469 Unrestricted 63.61 Metagenome 3300011879 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00316 Weill Cornell Medical College 3300011879 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.74 -74.0 49681191 75819 32 0 58 0 SRX822289 0.0 Metagenome 3300038662 *Microbiome Finished Marine algae associated bacterial community from Sydney, Australia Marine algae associated bacterial community from Sydney, Australia - Ulva australis_2R2 w/o D2 Ramaciotti Centre for Genomics 3300038662 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes j.nappi@unsw.edu.au Jadranka Nappi No Host-associated Algae Unclassified Unclassified Unclassified Marine -33.990304 151.231529 368259180 534264 58 7 123 11 0.0 Metagenome 3300008149 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 764669880 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008149 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 90857998 104899 65 0 92 0 0.0 Metagenome 3300022743 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 2-17_Aug_MG DOE Joint Genome Institute (JGI) 3300022743 Metagenome Analysis spades v. 3.11.1-check Yes Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9363 -83.5573 287764015 605870 536 32 878 55 SRX4478515 Unrestricted 21.17 Metagenome 3300032044 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20 DOE Joint Genome Institute (JGI) 3300032044 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1361685755 3328125 492 20 861 33 SRX5820249 Unrestricted 10.64 Metagenome 3300049788 *Microbiome Permanent Draft Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama - S028_CH17_fluctuating_T0 DOE Joint Genome Institute (JGI) 3300049788 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes njbouskill@lbl.gov Nicholas Bouskill No Environmental Terrestrial Tropical forest Soil Bulk soil Soil 9.17936 -79.8296 360815431 933583 278 10 544 17 Unrestricted 7.74 Metagenome 3300064941 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 744 in Lacombe, Alberta, Canada - S00JY_0333 Microbiome Insights 3300064941 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.27312777 -113.310707 18366735 27302 15 0 39 0 0.0 Metagenome 3300042811 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Lab enriched deep subsurface shale carbon reservoir microbial communities from Ohio, USA - WG8 viral induction NMDC pilot DOE Joint Genome Institute (JGI) 3300042811 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 3176848 4124 7 1 17 0 SRX2526870 0.0 Metagenome 3300003434 *Microbiome Permanent Draft Whitefly associated endosymbiont microbial communities from Neve Yaar, Israel Whitefly Bemisia tabaci associated secondary symbiont microbial communities from Neve Yaar, Israel - sample Cardinium_whitefly 3300003434 Metagenome Analysis released by JGI data releasing policy No Yes itaiopa6@gmail.com Itai Opatovsky No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Whitefly Bemisia tabaci associated 32.708101 35.179264 1097455 1327 5 0 1 0 0.0 Metagenome 3300050295 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_57 DOE Joint Genome Institute (JGI) 3300050295 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -75.662 158.876 188057439 266464 34 9 45 14 SRX18236984 Restricted 64.62 Metagenome 3300059752 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1550A-02 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059752 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2328 -123.878 185088552 388555 218 27 335 32 SRX2753723 Unrestricted 0.0 Metagenome 3300026056 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleC_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026056 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.107521 -121.649681 40161979 117794 162 5 302 11 SRX7188791 Unrestricted 0.0 Metagenome 3300001870 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-211 DOE Joint Genome Institute (JGI) 3300001870 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.28381 -156.5985 233646878 516612 226 1 408 0 SRX1990803 Unrestricted 0.0 Metagenome 3300000898 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 58 DOE Joint Genome Institute (JGI) 3300000898 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 7475555 22057 29 0 45 1 SRX1985062 Unrestricted 0.0 Metagenome 3300001562 *Microbiome Finished Human fecal microbial communities from the University of Tokyo, Japan, of healthy Japanese infants and adults Human fecal microbial communities from the University of Tokyo - healthy human sample F1-T, Adult, Female 3300001562 Metagenome Analysis PCAP released per Nikos No Yes hattori@k.u-tokyo.ac.jp Hattori M Yes 17916580 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 35.71 139.76 0 0 0 0 0 0 0.0 Metagenome 3300051656 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Activated sludge microbial communities from digester in WWTP, Madison, Wisconsin, United States - Acid_Sludge_Seed_A (version 2) DOE Joint Genome Institute (JGI) 3300051656 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35894622 Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.0738 -89.414 82413585 89736 57 0 58 0 SRX12687756, SRX15594531, SRX15594530 Restricted 0.0 Metagenome 3300017561 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS377 with 0.8UM filter JGI facility at Oak Ridge National Laboratory 3300017561 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 26670199 65372 39 0 65 1 0.0 Metagenome 3300029077 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 184_B Beijing Genomics Institute (BGI) 3300029077 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 38061279 40422 27 0 37 0 ERX490984 0.0 Metagenome 3300046798 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 soil DOE Joint Genome Institute (JGI) 3300046798 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121108 -123.269142 5.63 566724183 945764 213 14 410 25 Unrestricted 13.49 Metagenome 3300013318 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100557 University of Pennsylvania 3300013318 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 10144802 9822 6 1 11 5 SRX756197 0.0 Metagenome 3300045159 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_1_A DOE Joint Genome Institute (JGI) 3300045159 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 158284638 188356 88 1 122 2 Unrestricted 102.84 Metagenome 3300014579 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01329 Weill Cornell Medical College 3300014579 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.82 -73.87 10985056 10653 6 0 4 0 SRX823269 0.0 Metagenome 3300002168 *Microbiome Permanent Draft Biogas fermentation microbial communities from biogas plants in Germany Biogas fermentation microbial communities from Germany - Plant 3 DNA2 DOE Joint Genome Institute (JGI) 3300002168 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes asczyrba@techfak.uni-bielefeld.de Alexander Sczyrba Yes 27462367 Engineered Bioreactor Digestate Anaerobic Unclassified Biogas fermentantion 52.0385 8.4956 7.53 551665500 1053006 869 4 1467 4 SRX1598072 Unrestricted 0.0 Metagenome 3300069213 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Yellowstone NP, Wyoming, USA - YELL_003-M-20210708-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069213 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 44.954777 -110.533202 2438396634 5878161 1684 70 3160 108 0.0 Metagenome 3300071085 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Arizona, USA - SRER_002-M-20180801-COMP-DNA1 3300071085 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 8487 28 3 0 1 0 0.0 Metagenome 3300002115 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A5-10 DOE Joint Genome Institute (JGI) 3300002115 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 4166076 14404 63 0 117 0 SRX1990508 Unrestricted 0.0 Metagenome 3300013365 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01150 Weill Cornell Medical College 3300013365 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.64 -73.9 30137342 45451 25 0 44 0 SRX823105 0.0 Metagenome 3300048073 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Woodchip biofilm microbial communities from lab scale WBR in Cornell University, Ithaca, NY, USA - rep1_drw_p2_w5 DOE Joint Genome Institute (JGI) 3300048073 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 1042352846 2258258 601 49 1020 75 Unrestricted 8.2 Metagenome 3300053758 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Sediment-water slurry microbial communities from hot spring in Yellowstone National Park, WY, USA - Buffalo_pool_control_inc_1 DOE Joint Genome Institute (JGI) 3300053758 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Sediment-water slurry 44.5324 -110.7974 248567995 400747 133 2 194 1 Restricted 844.89 Metagenome 2162886012 *Microbiome Permanent Draft Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan State University, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v1 DOE Joint Genome Institute (JGI) 2162886012 Metagenome Analysis released based on JGI ITS No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Miscanthus rhizosphere 42.406189 -85.40016 178030893 281067 2 0 10 0 Unrestricted 0.0 Metagenome 3300070350 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dakota Coteau Field Site, North Dakota, USA - DCFS_003-M-20190731-COMP-DNA1 3300070350 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 15014636 46727 53 2 114 4 0.0 Metagenome 3300013559 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100104 University of Pennsylvania 3300013559 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 1049146 3228 6 0 10 0 SRX756726 0.0 Metagenome 2149837008 *Microbiome Permanent Draft Mouse gut microbial communities from the University of California, San Diego, USA (2) MouseMetaGen_Dec15_Ind15_HC11 (LB-cultured) University of California, San Diego 2149837008 Metagenome Analysis SOAP denovo released per JGI data release policy No Yes hchiang@ucsd.edu Hsin-I Chiang No Host-associated Mammals Large intestine Digestive system Cecum Mouse gut 32.42 117.1 13227066 39002 18 1 43 0 0.0 Metagenome 2156126002 *Microbiome Draft Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA Microbial communities from bioreactor (seeded with anoxic lake sediment) at LBNL, California, USA - Biofuel metagenome 2 DOE Joint Genome Institute (JGI) 2156126002 Metagenome Analysis Soap denovo and minimus No Yes hrbeller@lbl.gov Harry Beller Yes 29556105 Engineered Bioreactor Unclassified Anaerobic Unclassified Bioreactor 37.8754404 -122.2477251 394339794 559540 80 5 232 0 0.0 Metagenome 3300032042 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26 DOE Joint Genome Institute (JGI) 3300032042 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 757544033 1849252 360 4 615 7 SRX5820072 Unrestricted 11.11 Metagenome 3300045537 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Wabash River, Indiana, USA - NASQAN2011_333 DOE Joint Genome Institute (JGI) 3300045537 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.1308 -87.9414 320978084 912288 540 165 941 260 Unrestricted 0.0 Metagenome 3300004217 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 82_HOW10 DOE Joint Genome Institute (JGI) 3300004217 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 50555627 102838 51 1 87 1 SRX2721093 Unrestricted 0.0 Metagenome 3300033446 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Microbial mat bacterial communities from Middle Island sinkhole, Lake Huron, Michigan, United States - MIS.2016.202 DOE Joint Genome Institute (JGI) 3300033446 Metagenome Analysis spades v. 3.13.0 Yes Yes macgregb@umn.edu; sgrim@umich.edu Barbara MacGregor; Sharon Grim No Environmental Aquatic Lake Freshwater Sediment microbial mat 45.1993 -83.3279 314944902 635666 219 18 407 34 SRX7582715 Unrestricted 29.47 Metagenome 3300037113 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPN1-2-X2 DOE Joint Genome Institute (JGI) 3300037113 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3568 19.0503 586131416 1034586 210 18 286 30 SRX8163540 Unrestricted 18.26 Metagenome 3300002036 *Microbiome Permanent Draft Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease - 2012_BI_B3 3300002036 Metagenome Analysis IDBA-UD + SOAPdenovo + GAA made public per user request (Enrique Zozaya - 05/02/16 email) No Yes t.thomas@unsw.edu.au Torsten Thomas Yes 28419766 Host-associated Algae Ectosymbionts Red algae Unclassified Delisea pulchra -33.59 151.13 713039852 2278718 166 66 380 80 0.0 Metagenome 3300003432 *Microbiome Permanent Draft Microbial community impact on carbon sequestration in managed wetland Carbon farming Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk v3 (version 6) DOE Joint Genome Institute (JGI) 3300003432 Metagenome Analysis SOAPdenovo Version 1.05: testing... 2010, newbler (v2.8 (20120726_1306)), minimus2 AMOS/3.1.0_1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Sediment Wetland 38.1072 -121.6485 2212415794 5001746 2976 41 5045 64 SRX2514378, SRX2514377, SRX2514379, SRX2514380 Unrestricted 0.0 Metagenome 3300006931 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300006931 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 6875002680 18966574 4188 299 6877 527 SRX2740070, SRX2740071 Unrestricted 0.0 Metagenome 3300035044 *Microbiome Permanent Draft Marine planktonic microbial communities from Bay of Bengal, Indian Ocean Marine planktonic microbial communities from Bay of Bengal, Indian Ocean - 3U (SRX5580377-SRR8790598) Nanyang Technological University 3300035044 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released by JGI data releasing policy Yes Yes flauro@ntu.edu.sg Federico Lauro No Environmental Aquatic Unclassified Marine Unclassified Marine planktonic 5.91 89.6 1058308799 2340290 562 474 989 795 0.0 Metagenome 3300028651 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N2_2 DOE Joint Genome Institute (JGI) 3300028651 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 586834897 1592137 942 109 1592 181 SRX5281747 Unrestricted 0.0 Metagenome 3300011788 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01071 Weill Cornell Medical College 3300011788 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.8 -73.94 34695892 59818 26 2 48 6 SRX823026 0.0 Metagenome 3300038664 *Microbiome Permanent Draft Extreme environments viral communities from various locations Glacier ice viral communities from Ngari, Tibet, China - 13_GS3_50.1 DOE Joint Genome Institute (JGI) 3300038664 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Ice Freshwater Glacier ice 35.2833 81.4833 1651946 5924 5 2 8 0 SRX9097237 Unrestricted 1929.38 Metagenome 3300045811 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_3_F DOE Joint Genome Institute (JGI) 3300045811 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 165460773 200606 116 1 138 2 Unrestricted 114.36 Metagenome 3300047327 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Vasterbotten County, Sweden - Sphagnum lindbergii 19C_LI_DE DOE Joint Genome Institute (JGI) 3300047327 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.183 19.5578 1117027094 1727653 359 83 546 169 SRX14752511 Unrestricted 10.26 Metagenome 3300013137 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo - kab_092012_11.1m DOE Joint Genome Institute (JGI) 3300013137 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -1.64 29.05 1864133570 3301439 1714 12 2670 25 SRX7700395 Unrestricted 16.03 Metagenome 3300009106 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 295m, 2.7-0.2um, replicate a Georgia Genomics Facility 3300009106 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 360788355 483417 167 0 217 0 0.0 Metagenome 3300001564 *Microbiome Permanent Draft Check Fatty acid contaminated soil microbial communities from from India 3300001564 Metagenome Analysis released by JGI data releasing policy No Yes krish_tupi@yahoo.co.in KP No Environmental Terrestrial Unclassified Soil Contaminated Fatty acid contaminated soil 17251902 133224 332 6 1385 9 0.0 Metagenome 3300059754 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1549B-02 (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059754 Metagenome Analysis MEGAHIT v. 1.0.6 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2322 -123.8817 383371819 811307 380 21 566 37 SRX2523443 Unrestricted 0.0 Metagenome 3300025951 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqA_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025951 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.209766 -122.033424 157659381 353431 239 2 407 0 SRX7142961 Unrestricted 0.0 Metagenome 3300013686 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100278 University of Pennsylvania 3300013686 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 10080342 24940 12 0 12 0 SRX756623 0.0 Metagenome 3300009438 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506 DOE Joint Genome Institute (JGI) 3300009438 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 628056700 1199384 574 81 916 138 SRX2999668 Unrestricted 0.0 Metagenome 3300026349 *Microbiome Permanent Draft Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 PU6 DOE Joint Genome Institute (JGI) 3300026349 Metagenome Analysis spades v. 3.11.1 Yes Yes ccraft@indiana.edu Chris Craft No Environmental Aquatic Wetlands Freshwater Sediment sediment 31.3377 -81.4644 111458465 310934 306 1 589 0 SRX4796525 Unrestricted 6.58 Metagenome 7000000573 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 160582958 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000573 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 2028337 4401 0 0 0 0 SRX023269, SRX023268 0.0 Metagenome 3300044248 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 053-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044248 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9208 -106.9513 385992358 1054932 509 15 953 20 Unrestricted 7.39 Metagenome 3300001231 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and M1 (3) DOE Joint Genome Institute (JGI) 3300001231 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 56450518 107671 34 0 41 0 SRX3782532 Unrestricted 0.0 Metagenome 3300005168 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgLPC DOE Joint Genome Institute (JGI) 3300005168 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 775493504 2456141 897 18 1683 38 SRX2521131 Unrestricted 0.0 Metagenome 3300042159 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A2 University of California, Davis 3300042159 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 290561188 785847 358 7 672 14 0.0 Metagenome 3300014901 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01407 Weill Cornell Medical College 3300014901 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.84 -73.9 18008423 33002 18 0 22 0 SRX823347 0.0 Metagenome 3300000109 *Microbiome Permanent Draft Hot Spring microbial communities from Great Boiling Spring, Nevada Hot spring sediment microbial communities from Great Boiling Spring, Nevada - Cellulolytic enrichment CS 85C v2 (version 2) DOE Joint Genome Institute (JGI) 3300000109 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS Yes Yes brian.hedlund@unlv.edu Brian P. Hedlund, Brian Hedlund Yes 23555835 Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot Spring 40.67 -119.37 6.37 72039733 136858 53 2 96 0 Unrestricted 0.0 Metagenome 3300046413 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_170125.NP2 DOE Joint Genome Institute (JGI) 3300046413 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 893838369 2120818 881 139 1482 256 Unrestricted 9.34 Metagenome 3300014697 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00373 Weill Cornell Medical College 3300014697 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.92 46055029 78658 29 0 35 0 SRX822344 0.0 Metagenome 3300065523 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 798 in Beiseker, Alberta, Canada - S00JY_0393 Microbiome Insights 3300065523 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.24546833 -113.3320866 9457976 12927 21 1 30 1 0.0 Metagenome 3300037301 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_C1 DOE Joint Genome Institute (JGI) 3300037301 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 983839438 2261541 470 69 874 102 SRX9146925 Unrestricted 6.79 Metagenome 3300037599 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C7-3B DOE Joint Genome Institute (JGI) 3300037599 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 753085781 2108495 855 21 1642 32 SRX9166559 Unrestricted 6.19 Metagenome 3300014221 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 206_L4_2014-6-2 San Diego State University 3300014221 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 140602 360 8 9 16 13 0.0 Metagenome 3300029453 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001908-98 Beijing Genomics Institute (BGI) 3300029453 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 85709853 109101 67 2 105 3 0.0 Metagenome 3300000647 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 03AUG2009 epilimnion DOE Joint Genome Institute (JGI) 3300000647 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300030460 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from healthy individual in Ann Arbor, USA - MG100165 University of Michigan 3300030460 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 42.28 -83.74 55831082 86276 55 0 75 0 0.0 Metagenome 3300001380 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW37 contaminated, 5.8 m DOE Joint Genome Institute (JGI) 3300001380 Metagenome Analysis Yes Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.099444 -73.604444 629591094 1238958 569 4 954 8 SRX3307784 Unrestricted 0.0 Metagenome 3300049135 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S16_B_D45 hydrophilic DOE Joint Genome Institute (JGI) 3300049135 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 371691712 645388 213 35 333 45 Unrestricted 32.26 Metagenome 3300052904 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Wyoming, USA - M_C2_S1 DOE Joint Genome Institute (JGI) 3300052904 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 41.11603 -106.14759 93372928 169446 174 14 311 26 Unrestricted 28.89 Metagenome 3300064808 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 615 in Smith, Alberta, Canada - S00JY_0657 Microbiome Insights 3300064808 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 55.07270132 -113.545927 87620900 116939 46 2 80 3 0.0 Metagenome 3300042793 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N3_0_10 NMDC pilot DOE Joint Genome Institute (JGI) 3300042793 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37379502 -119.2722385 30097043 86458 154 13 302 17 SRX2523215 0.0 Metagenome 3300022583 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 5 Selected contigs with viral hallmark genes Autonomous University of Barcelona 3300022583 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 1684016 2537 0 0 0 0 0.0 Metagenome 3300006163 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG DOE Joint Genome Institute (JGI) 3300006163 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.4774 -85.451 3014042421 9705132 2406 154 4185 280 SRX2745057 Unrestricted 0.0 Metagenome 3300012211 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG DOE Joint Genome Institute (JGI) 3300012211 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.5673 -123.4758 3036787151 6063982 1751 66 3033 94 SRX3372764 Unrestricted 0.0 Metagenome 3300042005 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 DOE Joint Genome Institute (JGI) 3300042005 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.201 -97.9447 702064470 1704342 683 70 1156 117 SRX14828592 Unrestricted 7.38 Metagenome 3300045418 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-547 Genome Quebec 3300045418 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 53.607447 -123.488697 1241241482 2903821 617 168 1011 296 0.0 Metagenome 3300020264 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556116-ERR599158) CEA Genoscope 3300020264 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 19.0342 64.5162 203828866 560514 150 10 294 12 0.0 Metagenome 3300011389 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00973 Weill Cornell Medical College 3300011389 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.82 15593085 22654 10 0 13 1 SRX822935 0.0 Metagenome 3300020817 *Microbiome Permanent Draft Metagenomes from anaerobic digester of solid waste Food waste and fibre mixture microbial community, University of Toronto, Ontario, Canada - LBfeed1 megahit University of Toronto 3300020817 Metagenome Analysis Megahit v1.1.1 Yes Yes elizabeth.edwards@utoronto.ca; camillaln@gmail.com Elizabeth A. Edwards; Camilla Nesb? No Engineered Solid waste Unclassified Household waste Unclassified food waste 43.6629 -79.3957 1201537563 1829050 383 188 563 279 SRX4965139, SRX4986166 0.0 Metagenome 3300012144 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC080 MetaG DOE Joint Genome Institute (JGI) 3300012144 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 34.917 -79.3533 192999484 321576 141 55 186 99 SRX3539722 Unrestricted 0.0 Metagenome 3300002227 *Microbiome Permanent Draft Marine microbial communities from the Baltic Sea examining degradability of arctic, terrigenous carbon compounds in the sea Marine microbial communities from the Baltic Sea - M1t6 FKB1 (101N) Karolinska Institutet 3300002227 Metagenome Analysis released per JGI data release policy No Yes daniel.herlemann@io-warnemuende.de, daniel.herlemann@emu.ee Daniel Herlemann, Daniel P. Herlemann No Environmental Aquatic Oceanic Marine Unclassified Marine 58.133 10.0 186832289 951626 171 46 361 85 0.0 Metagenome 3300038960 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample23 King Abdulaziz City for Science and Technology (KACST) 3300038960 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 22.2 37.55 39658596 99640 41 0 93 0 SRX1097590 0.0 Metagenome 3300011367 *Microbiome Permanent Draft Permafrost microbial communities from the Kolyma-Indigirka Lowland, Siberia, Russia Permafrost microbial communities from the Kolyma-Indigirka Lowland, Siberia, Russia - IC4_1M_join_R1 Institute of Physicochemical and Biological Problems in Soil Science 3300011367 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 68.716667 158.9 3781806 12652 13 4 28 3 SRX763249 0.0 Metagenome 3300020531 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 21SEP2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020531 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 96730630 227993 122 21 206 26 SRX1989923 Unrestricted 0.0 Metagenome 3300040618 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Abby Road, Pacific Northwest, WA, USA - ABBY_006-O-20170605-COMP-DNA1 Battelle Memorial Institute 3300040618 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.76243 -122.33033 1457252 4589 24 4 42 8 0.0 Metagenome 3300040957 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P11_D5 DOE Joint Genome Institute (JGI) 3300040957 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 994260985 1403124 222 6 356 13 SRX9635300, SRX9635301 Unrestricted 0.0 Metagenome 3300002907 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm DOE Joint Genome Institute (JGI) 3300002907 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 27843720, 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 420592052 981120 498 23 847 33 SRX2563717 Unrestricted 0.0 Metagenome 3300026748 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05K1-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026748 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 21265268 70562 89 1 145 5 SRX2576117 Unrestricted 0.0 Metagenome 3300040665 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_005-M-20160816-COMP-DNA1 Battelle Memorial Institute 3300040665 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 1421768 4406 3 0 13 0 0.0 Metagenome 3300028022 *Microbiome Permanent Draft Extreme environments viral communities from various locations Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750m DOE Joint Genome Institute (JGI) 3300028022 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Mesopelagic Marine Unclassified seawater 34.0321 27.821 297210884 813904 14 12 27 25 SRX5249174 Unrestricted 43.18 Metagenome 3300054999 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Soil microbial communities from Washington Gulch, Colorado, USA - LS_L_07192018 DOE Joint Genome Institute (JGI) 3300054999 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.95 -107.03 2123383553 3729370 688 110 1159 166 Unrestricted 15.99 Metagenome 3300005447 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_09_40cm DOE Joint Genome Institute (JGI) 3300005447 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2516468409 7103151 2144 39 3920 89 SRX2727807 Unrestricted 0.0 Metagenome 3300035660 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL18G_13-B DOE Joint Genome Institute (JGI) 3300035660 Metagenome Analysis metaspades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5106 -110.3566 2501271396 4620447 1443 12 2332 8 SRX8281196 Unrestricted 17.1 Metagenome 3300009517 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 2_5/28/2013_ DNA (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300009517 Metagenome Analysis spades v. 3.6.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 380930862 618069 145 31 249 39 SRX2714819, SRX2885145, SRX2714818, SRX2885144, SRX2714817, SRX2714816, SRX2714815, SRX2714814 Unrestricted 0.0 Metagenome 3300021260 *Microbiome Permanent Draft Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States - Hamp_Shaw_1 DOE Joint Genome Institute (JGI) 3300021260 Metagenome Analysis spades v. 3.11.1-check Yes Yes zachary.freedman@mail.wvu.edu Zachary Freedman No Environmental Terrestrial Surface mine Soil Reclaimed soil 39.458 -79.073 17433097 53740 93 8 153 12 SRX4029905 Unrestricted 6.42 Metagenome 3300048030 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_180620.NP2 DOE Joint Genome Institute (JGI) 3300048030 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 717835191 1489401 447 71 636 102 Unrestricted 12.59 Metagenome 3300003619 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI037_S3LV_110m_DNA DOE Joint Genome Institute (JGI) 3300003619 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 309803431 632578 248 44 462 54 Unrestricted 0.0 Metagenome 3300070658 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_010-O-20190715-COMP-DNA1 3300070658 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 548390 1936 17 4 22 5 0.0 Metagenome 3300012336 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100446 University of Pennsylvania 3300012336 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 22659787 47526 18 1 30 0 SRX756552 0.0 Metagenome 3300050555 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_RHK2_1_to_RHK2 DOE Joint Genome Institute (JGI) 3300050555 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.153 -124.211 455287469 717868 132 81 218 123 Unrestricted 24.34 Metagenome 3300045213 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_5_A DOE Joint Genome Institute (JGI) 3300045213 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 181871198 223394 106 1 131 2 Unrestricted 71.62 Metagenome 3300023181 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L194-509B-1 DOE Joint Genome Institute (JGI) 3300023181 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 760514773 1518258 562 127 736 202 SRX4801558 Unrestricted 12.28 Metagenome 3300027706 *Microbiome Permanent Draft Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027706 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade Yes 30397342 Environmental Terrestrial Unclassified Soil Unclassified Surface soil 40.7999 -76.3402 704553283 1213325 420 13 641 21 SRX2837997 Unrestricted 0.0 Metagenome 3300031464 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Sorghum-adapted microbial communities enriched on stacked mutant (SM) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - SM_Day14_6 DOE Joint Genome Institute (JGI) 3300031464 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 152291798 221788 235 0 231 0 SRX5661500 Unrestricted 165.49 Metagenome 3300029258 *Microbiome Finished Deep ocean water column microbial communities from Yap Trench, western Pacific Ocean Seawater microbial communities from Yap Trench, western Pacific Ocean - 37I-Yap-CTD02-100m 2000bp_Newsun Novogene 3300029258 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Ocean trench Marine Unclassified seawater 9.87 138.5 618755181 676925 168 0 205 1 0.0 Metagenome 3300000384 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from University of Liverpool Illumina_500ng_assembled University of Liverpool 3300000384 Metagenome Analysis Meta-IDBA released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 24332616 37556 135 0 289 0 0.0 Metagenome 3300011523 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00989 Weill Cornell Medical College 3300011523 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.6 -73.75 23660621 32329 15 0 23 0 SRX822951 0.0 Metagenome 3300070346 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_071-M-20190826-COMP-DNA1 3300070346 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 5264685 16536 28 1 59 1 0.0 Metagenome 3300070917 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Alaska, USA - DEJU_015-M-20180619-COMP-DNA1 3300070917 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 98447249 288903 165 11 330 30 0.0 Metagenome 3300013610 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100189 University of Pennsylvania 3300013610 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 5228211 10516 5 4 9 9 SRX756344 0.0 Metagenome 3300014266 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleB_D1 DOE Joint Genome Institute (JGI) 3300014266 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.107521 -121.649681 285945592 733968 447 14 883 22 SRX7188816 Unrestricted 0.0 Metagenome 3300022329 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL3WBGP2 JM41 AGRF 3300022329 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996531 115.533257 29642981 56853 37 0 59 0 0.0 Metagenome 3300024272 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet fungal communities from Santa Barbara, California, USA - diluted pellet 1 Spades (v3) (version 3) DOE Joint Genome Institute (JGI) 3300024272 Metagenome Analysis spades v. 3.11.1-check No Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4204 -119.6671 5321430016 10107268 5473 30 7404 44 SRX3963535 Unrestricted 0.0 Metagenome 3300003405 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM DOE Joint Genome Institute (JGI) 3300003405 Metagenome Analysis revert back to private per Christa Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 14650543 42990 178 8 281 17 SRX2574350 Unrestricted 0.0 Metagenome 3300071130 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_038-O-20190717-COMP-DNA1 3300071130 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 2521339 8400 25 2 34 4 0.0 Metagenome 3300001833 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM24, ROCA_DNA012_0.2um_2l 3300001833 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River plume Marine Plankton Marine plankton 10.2885 -54.512 78089629 165475 40 4 81 6 0.0 Metagenome 3300017925 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40 DOE Joint Genome Institute (JGI) 3300017925 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 626119570 1114160 305 2 538 11 SRX3959993 Unrestricted 23.81 Metagenome 3300026960 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A5-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300026960 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 78927299 227817 143 0 289 0 SRX1990508 Unrestricted 0.0 Metagenome 3300039145 *Microbiome Permanent Draft Coralloid root microbial communities from various locations in Chiapas, Mexico Coralloid root microbial communities from Jiquipilas, Chiapas, Mexico - JP6-T1 Langebio Cinvestav 3300039145 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Host-associated Plants Unclassified Roots Unclassified Coralloid root 16.655 -92.39972222 15392482 26630 15 0 18 0 0.0 Metagenome 3300023252 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0910-MG DOE Joint Genome Institute (JGI) 3300023252 Metagenome Analysis spades v. 3.11.1 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 235623788 404316 174 0 219 0 SRX4369925 Unrestricted 24.84 Metagenome 3300038748 *Microbiome Draft Lab enriched soil microbial communities from farm land in Gulf Coast, Texas, United States Lab enriched soil microbial communities from farm land in Gulf Coast, Texas, United States - BPC MK-NAPL Yokohama City University 3300038748 Metagenome Analysis SPAdes v. 3.13.2 released by JGI data releasing policy Yes Yes morij@yokohama-cu.ac.jp Jiro Mori No Environmental Terrestrial Unclassified Soil Agricultural land Soil 29.0 -96.0 96478542 173141 21 1 26 7 0.0 Metagenome 3300007499 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764487809 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007499 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 78737115 136564 74 0 109 0 0.0 Metagenome 3300027157 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Colum_RepC_8h DOE Joint Genome Institute (JGI) 3300027157 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 183598579 392731 161 6 277 9 SRX5245420 Unrestricted 16.86 Metagenome 2236876019 *Microbiome Permanent Draft wCau-infected Ephestia kuehniella viral communities from Nashville, Tennessee, USA wCau-infected Ephestia kuehniella DNA viral metagenome Vanderbilt University 2236876019 Metagenome Analysis released per JGI data release policy No Yes sarah.bordenstein@vanderbilt.edu Sarah Bordenstein No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified wCau-infected Ephestia kuehniella 36.0146511 -87.0327892 189422778 719004 71 36 41 84 0.0 Metagenome 3300014823 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A3_80cm_0M University of Tennessee 3300014823 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 275818162 597970 102 0 198 2 SRX710568 0.0 Metagenome 7000000452 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000452 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2747695 4816 0 0 0 0 0.0 Metagenome 3300026040 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleA_D2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026040 Metagenome Analysis spades v. 3.11.1 released Yes Yes jzz0026@lbl.gov; sgtringe@lbl.gov Jinglie Zhou; Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.052509 -121.76873 91546494 235412 193 1 356 1 SRX7181936 Unrestricted 0.0 Metagenome 3300000872 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and M2 DOE Joint Genome Institute (JGI) 3300000872 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 44546970 62600 19 0 39 0 SRX3311646 Unrestricted 0.0 Metagenome 3300050715 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water viral communities from Sandhills, Nebraska, United States - NSL_Bean_2018_V DOE Joint Genome Institute (JGI) 3300050715 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.7748 -102.5295 660262202 1565999 163 2 281 6 Unrestricted 43.04 Metagenome 3300061142 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IF3SW PMA-treated Jet Propulsion Laboratory, California Institute of Technology 3300061142 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 63728657 97021 15 4 22 8 SRX2249367, SRX2249366, SRX3808538, SRX3808528 0.0 Metagenome 3300032368 *Microbiome Permanent Draft STAs constructed wetland biome Wetland sediment microbial communities from Everglades, Florida, USA - STA64-Sample06_1 Combine6 University of Florida 3300032368 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy No Yes ng.hanh24@gmail.com Hanh Nguyen No Environmental Aquatic Wetlands Freshwater Sediment sediment 26.38 -80.51 6.6-8.4 474807479 630284 172 1 236 0 0.0 Metagenome 3300022728 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLU2 DOE Joint Genome Institute (JGI) 3300022728 Metagenome Analysis spades v. 3.11.1-check Yes Yes baldrian@biomed.cas.cz; kostelecke.uzeniny@seznam.cz Petr Baldrian; Tomas Vetrovsky No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 49.044 13.617 28210475 66416 78 31 115 45 SRX4456465 Unrestricted 11.75 Metagenome 3300026664 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-C (SPAdes) DOE Joint Genome Institute (JGI) 3300026664 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.33 7295623 22944 43 5 95 5 SRX1991444 Unrestricted 0.0 Metagenome 3300036651 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil viral communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 20_4.5_V_2 DOE Joint Genome Institute (JGI) 3300036651 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1866 -2.2146 268140591 712361 27 5 64 21 SRX8234406 Unrestricted 44.22 Metagenome 3300043108 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver proximal colon microbial communities from Maple Ridge, British Columbia, Canada - Beaver6Prox.Colon1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043108 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Proximal colon proximal colon 49.18 -122.54 219320152 421419 379 25 615 37 SRX8346533 Unrestricted 18.65 Metagenome 3300041918 *Microbiome Finished Microbial communities from various locations in Russia Hot spring sediment microbial communities from Vertoletniy spring, Uzon, Kamchatka - 3808s Winogradsky Institute of Microbiology 3300041918 Metagenome Analysis MegaHit v. 1.2.9 released by JGI data releasing policy No Yes kublanov.ilya@gmail.com Ilya V. Kublanov No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 54.50005 160.0072917 36055658 68879 43 0 37 0 0.0 Metagenome 3300032315 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada - Lake 17-058 Genome Quebec 3300032315 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.609742 -67.796449 693659956 1305209 348 73 575 145 0.0 Metagenome 3300001089 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 DOE Joint Genome Institute (JGI) 3300001089 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 79380072 219144 135 14 227 22 SRX3312098 Unrestricted 0.0 Metagenome 3300029860 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37337 Beijing Genomics Institute (BGI) 3300029860 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 235715117 311036 212 0 319 0 0.0 Metagenome 3300023097 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L126-311R-4 DOE Joint Genome Institute (JGI) 3300023097 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 651745818 1430913 602 130 1073 212 SRX4799434 Unrestricted 8.61 Metagenome 3300012813 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched mosquito-associated microbial communities from UW Madison campus, WI, USA - HID1973I_E11 MG DOE Joint Genome Institute (JGI) 3300012813 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 78165393 103707 108 0 122 0 SRX3564668 Unrestricted 0.0 Metagenome 3300006247 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159005010 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006247 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 239287147 382225 229 1 292 4 0.0 Metagenome 3300029572 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P036V1 Beijing Genomics Institute (BGI) 3300029572 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 187751326 244650 160 0 215 0 0.0 Metagenome 3300041045 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - T5D7 IDBA-UD 60x Baseclear 3300041045 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 94030209 132623 148 8 230 6 0.0 Metagenome 3300001067 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN589 DOE Joint Genome Institute (JGI) 3300001067 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.070856 -96.582821 95450 304 7 0 15 0 SRX1986973 Unrestricted 0.0 Metagenome 3300018071 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1 DOE Joint Genome Institute (JGI) 3300018071 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 791675153 1784296 757 20 1380 32 SRX3939244 Unrestricted 5.57 Metagenome 3300038349 *Microbiome Permanent Draft Aquatic viral communities from harbor and ballast water - Michigan State University Aquatic viral communities from ballast water - Michigan State University - MB_ballast water Michigan State University 3300038349 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified Aquatic 5046252 15225 2034 149 4951 189 SRX717579 0.0 Metagenome 3300046772 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Tennessee River, Kentucky, USA - NASQAN2011_337 DOE Joint Genome Institute (JGI) 3300046772 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 37.0378 -88.5294 134556168 349488 194 47 345 62 Unrestricted 0.0 Metagenome 3300045034 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Plains ecozone, Canada - Lake 04-620 Genome Quebec 3300045034 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 61.998774 -116.330501 989518546 2281995 469 131 797 222 0.0 Metagenome 3300047563 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Watershed 3 Stream, North Woodstock, New Hampshire, USA - watershed3_2019_sw_WHONDRS-S19S_0084 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047563 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 43.9547 -71.7227 377639744 581809 549 281 1007 368 Unrestricted 0.0 Metagenome 3300001947 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from the Gulf of Maine, Canada - GS002 J. Craig Venter Institute (JCVI) 3300001947 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine 42.503056 -67.24 74202974 125810 44 0 68 0 0.0 Metagenome 3300001316 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-35cm)- 6 month illumina University of Tennessee 3300001316 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 3226296 18360 32 3 25 6 0.0 Metagenome 3300024319 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 85D DOE Joint Genome Institute (JGI) 3300024319 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 255901654 518436 137 26 220 48 SRX4474205 Unrestricted 22.17 Metagenome 2013843003 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP4 Joseph's Coat Springs v1 DOE Joint Genome Institute (JGI) 2013843003 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23720654 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.733519 -110.333 6.1 17963232 26307 2 0 1 0 Unrestricted 0.0 Metagenome 3300042032 *Microbiome Permanent Draft Mollusc gills microbial communities from various hydrothermal vent in Atlantic Ocean Mollusc gills microbial communities from Semeiov-Ash lighthouse hydrothermal vent, Atlantic Ocean - BputSym_Se-AL_3_1115C Max Planck Institute for Marine Microbiology 3300042032 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 13.513467 -44.963133 19564288 29002 4 4 6 4 ERX3367186 0.0 Metagenome 3300043436 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2000-rr0308 DOE Joint Genome Institute (JGI) 3300043436 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 757974766 1189710 212 6 267 3 Unrestricted 24.67 Metagenome 3300035547 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B3.3_Sample3.Rodeo3.Well1209 DOE Joint Genome Institute (JGI) 3300035547 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 448682836 745615 385 0 531 0 SRX8353092 Unrestricted 31.74 Metagenome 3300013914 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -PAB003 Weill Cornell Medical College 3300013914 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -74.01 13397766 17916 25 7 30 11 SRX823431 0.0 Metagenome 3300025106 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Groundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Big Spring (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025106 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; duane.moser@dri.edu Ramunas Stepanauskas; Duane Moser No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 36.37 -116.27 348834381 683654 379 27 619 49 SRX2948571 Unrestricted 0.0 Metagenome 3300041029 *Microbiome Permanent Draft Hydraulic fracturing wastewater impacted soil microbiome project Soil microbial communities from Grande Prairie, Alberta, Canada - GP00 University of British Columbia 3300041029 Metagenome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy Yes Yes alessi@ualberta.ca Daniel S. Alessi No Environmental Terrestrial Unclassified Soil Unclassified Soil 55.1707 -118.7884 3635267 5244 15 2 29 3 0.0 Metagenome 3300007644 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1555B-02 DOE Joint Genome Institute (JGI) 3300007644 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2024 -123.9409 367162242 719190 354 18 528 37 SRX2753738 Unrestricted 8.27 Metagenome 3300040511 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Jornada LTER, Desert Southwest, NM, USA - JORN_047-M-20170808-COMP-DNA1 Battelle Memorial Institute 3300040511 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Desert Terrestrial soil 32.59068 -106.84254 3069313 9347 22 0 36 0 0.0 Metagenome 3300020373 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000959 (ERX555949-ERR598946) CEA Genoscope 3300020373 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -12.9057 -96.155 729839223 1581291 456 12 767 36 0.0 Metagenome 3300013622 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100640 University of Pennsylvania 3300013622 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 6222350 12939 7 0 16 0 SRX756454 0.0 Metagenome 3300069287 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from National Grasslands LBJ, Texas, USA - CLBJ_003-M-20210506-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069287 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Grasslands Soil Unclassified Terrestrial soil 33.40399 -97.57274 4657247937 10051955 2186 101 4080 193 0.0 Metagenome 3300027267 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus triangulatus BAHAMAS.1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027267 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 50.8 8.81 278693963 425732 7 1 10 2 SRX3340582 Unrestricted 0.0 Metagenome 3300061601 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - Maria343 (version 2) DOE Joint Genome Institute (JGI) 3300061601 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Sand Soil Desert sand -78.0613 164.027 13636131 45576 28 0 47 0 Unrestricted 234.21 Metagenome 3300042975 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_USB_042 (downsampled for mapping) DOE Joint Genome Institute (JGI) 3300042975 Metagenome Analysis metaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 45874904 46304 45 0 46 0 SRX12727626, SRX12727625 Unrestricted 0.0 Metagenome 3300030390 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_082 - TARA_R100000541 CEA Genoscope 3300030390 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -47.1863 -58.2902 104338991 203853 26 0 41 0 0.0 Metagenome 3300014707 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01276 Weill Cornell Medical College 3300014707 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.96 55515759 99077 43 0 67 0 SRX823222 0.0 Metagenome 3300029115 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021299-74 Beijing Genomics Institute (BGI) 3300029115 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 157757247 196344 112 0 164 0 0.0 Metagenome 3300028718 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194 DOE Joint Genome Institute (JGI) 3300028718 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040592 -106.9484972 636267370 1625205 355 16 681 35 SRX5355401 Unrestricted 10.73 Metagenome 3300069269 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, Pacific Southwest, CA, USA - SJER_025-O-20170315-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069269 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.10878 -119.73228 119701340 348758 304 72 633 129 0.0 Metagenome 3300006458 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2 of subject 764487809 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006458 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 126915544 165278 85 0 105 0 0.0 Metagenome 7000000280 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 160178356 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000280 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 118819 228 0 0 0 0 SRX023305, SRX023304 0.0 Metagenome 3300027289 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius loisae LIZARD ISLAND.2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027289 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 416885933 444847 3 1 5 3 SRX2712186 Unrestricted 0.0 Metagenome 3300013176 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100750 University of Pennsylvania 3300013176 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 16038460 30871 32 7 66 10 SRX756100 0.0 Metagenome 3300023480 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_65B University of California, Irvine 3300023480 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 60240352 60165 9 0 20 0 0.0 Metagenome 3300027814 *Microbiome Permanent Draft Marine sediment microbial communities from White Oak River estuary, North Carolina Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-3-8_10 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027814 Metagenome Analysis spades v. 3.11.1 Yes Yes acidophile@gmail.com Brett Baker No Environmental Aquatic Intertidal zone Marine Estuary: Microbial mat Marine sediment 34.640199 -77.109447 762479598 1922283 662 0 1189 1 SRX2554352 Unrestricted 0.0 Metagenome 3300001192 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from University of Liverpool 454_50ng_assembled University of Liverpool 3300001192 Metagenome Analysis Newbler v2.8 released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 16679264 29513 18 0 25 0 0.0 Metagenome 3300028272 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_120m DOE Joint Genome Institute (JGI) 3300028272 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 306817343 632377 392 0 641 3 SRX5244743 Unrestricted 14.8 Metagenome 3300057055 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F1P_80_82 DOE Joint Genome Institute (JGI) 3300057055 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9544076 -81.67361068 1492745082 2165144 641 4 1032 2 Unrestricted 14.94 Metagenome 3300002077 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3 DOE Joint Genome Institute (JGI) 3300002077 Metagenome Analysis Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 304846874 859642 951 68 1654 88 SRX3323214 Unrestricted 0.0 Metagenome 3300025438 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK9 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025438 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 208281887 385214 78 4 138 5 SRX2747200 Unrestricted 0.0 Metagenome 3300033819 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-2-M DOE Joint Genome Institute (JGI) 3300033819 Metagenome Analysis spades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 234652420 567119 243 6 369 7 SRX8137904, SRX8137903 Unrestricted 0.0 Metagenome 3300045576 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_2_D DOE Joint Genome Institute (JGI) 3300045576 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 164226232 203957 94 1 108 1 Unrestricted 118.94 Metagenome 3300014156 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin01_60_metaG DOE Joint Genome Institute (JGI) 3300014156 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1083380676 1956442 502 1 790 1 SRX3291950 Unrestricted 10.02 Metagenome 3300049641 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MG_220318 DOE Joint Genome Institute (JGI) 3300049641 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 571104602 908684 753 1 1069 4 Unrestricted 20.06 Metagenome 3300046009 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater viral communities from Lake Mendota, Wisconsin, United States - ME_2020-10-19_5m_Virus_AB DOE Joint Genome Institute (JGI) 3300046009 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 807678545 1627192 163 14 226 29 Unrestricted 39.15 Metagenome 3300028765 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_2 DOE Joint Genome Institute (JGI) 3300028765 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 1195818524 2352570 356 91 540 162 SRX5355820 Unrestricted 0.0 Metagenome 3300011497 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00417 Weill Cornell Medical College 3300011497 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.61 -74.03 22925200 28370 9 0 23 0 SRX822387 0.0 Metagenome 3300029168 *Microbiome Permanent Draft Synthetic microbial community for library methods comparison from University of Liverpool, United Kingdom Synthetic microbial communities for library methods comparison from University of Liverpool, United Kingdom - Mg24 University of Liverpool 3300029168 Metagenome Analysis released Yes Yes No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 53.405936 -2.9677609 24611189 41725 28 0 36 0 ERX1325900 0.0 Metagenome 3300066297 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dead Lake, Ozarks Complex, AL, USA - DELA_037-M-20160824-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066297 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 32.54172 -87.80389 56408114 174903 133 14 248 13 0.0 Metagenome 3300006737 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG DOE Joint Genome Institute (JGI) 3300006737 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -12.999 -80.801 468144067 1027696 50 0 77 0 SRX2926263 Unrestricted 0.0 Metagenome 3300022345 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL3WBGP1 JM7 AGRF 3300022345 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996531 115.533257 32241371 60046 36 3 49 4 0.0 Metagenome 3300040751 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Estuary water microbial communities from Narragansett Bay, Rhode Island, USA - E1_AmbB DOE Joint Genome Institute (JGI) 3300040751 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.9078 -71.5683 847103832 1250229 361 129 477 165 SRX9640627 Unrestricted 20.05 Metagenome 3300040324 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from LBJ National Grassland , Southern Plains, TX, USA - CLBJ_038-O-20170413-COMP-DNA1 Battelle Memorial Institute 3300040324 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 33.40123 -97.57 4913702 15199 37 4 76 7 0.0 Metagenome 3300002701 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Produced water sample 10PW from MHGC oil field - MHGC10PW McGill University 3300002701 Metagenome Analysis released per JGI data release policy No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey No Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 50.04 -110.68 7.2 274195709 587129 324 3 598 2 0.0 Metagenome 2199352030 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC2 University of Sao Paulo, Virginia Bioinformatics Institute 2199352030 Metagenome Analysis newbler No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 23637931 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 433746055 1264263 0 0 0 0 0.0 Metagenome 7000000331 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159571453 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000331 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 92807939 193617 0 0 0 0 0.0 Metagenome 3300031779 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22 DOE Joint Genome Institute (JGI) 3300031779 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1256757557 2966881 346 5 544 17 SRX5820290 Unrestricted 11.96 Metagenome 3300032293 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains Ecozone, Canada - Lake 08-179 Genome Quebec 3300032293 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.949532 -79.432674 686895538 1436142 335 71 558 149 0.0 Metagenome 3300028086 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Atlam_RepC_8h DOE Joint Genome Institute (JGI) 3300028086 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 140651344 321212 161 5 265 7 SRX5245419 Unrestricted 15.61 Metagenome 3300005453 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG DOE Joint Genome Institute (JGI) 3300005453 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 582426657 1481757 565 3 827 8 SRX2740068 Unrestricted 0.0 Metagenome 3300030126 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from colorectal cancer patient in Ann Arbor, USA - MG100138 University of Michigan 3300030126 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 42.28 -83.74 30373733 52462 65 0 100 0 0.0 Metagenome 3300040943 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P13_D5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300040943 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 815968685 1201167 210 10 291 18 SRX9635093, SRX9635092 Unrestricted 0.0 Metagenome 3300047650 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BT04-02_D100 (version 2) DOE Joint Genome Institute (JGI) 3300047650 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3555 19.0492 160254701 248257 102 27 135 34 Restricted 0.0 Metagenome 3300037455 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_012 DOE Joint Genome Institute (JGI) 3300037455 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -19.6574 146.8351 2519986807 3875879 1793 30 2685 33 SRX9161809 Unrestricted 14.26 Metagenome 3300025831 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-22 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025831 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 617333235 1027998 529 11 762 12 SRX3198640 Unrestricted 0.0 Metagenome 3300007940 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human attached/keratinized gingiva microbial communities from NIH, USA - visit 2, subject 763496533 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007940 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Attached/Keratinized gingiva Human 39.0042816 -77.1012173 54728445 62168 47 0 46 1 0.0 Metagenome 3300042603 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Macrotermes cf. amplus from Northern Cameroon, Cameroon - Mx356 Eurofins MWG Operon 3300042603 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 5.5432 10.88415 350992600 451862 200 10 261 25 0.0 Metagenome 3300028558 *Microbiome Permanent Draft Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG DOE Joint Genome Institute (JGI) 3300028558 Metagenome Analysis spades v. 3.11.1 Yes Yes rbneum@uw.edu Rebecca Neumann No Host-associated Plants Rhizosphere Roots Soil rhizosphere 47.6516 -122.3045 556973869 1360685 469 14 791 32 SRX5271539 Unrestricted 8.9 Metagenome 3300034349 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_03D_18 DOE Joint Genome Institute (JGI) 3300034349 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9141 -147.8344 549182281 1375819 504 3 919 7 SRX7633907 Unrestricted 6.76 Metagenome 3300029447 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 075_4_28_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029447 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 302823872 417749 329 0 451 0 0.0 Metagenome 3300014071 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00633 Weill Cornell Medical College 3300014071 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.83 -73.94 31946910 52808 21 0 18 0 SRX822600 0.0 Metagenome 3300025517 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-5-D (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025517 Metagenome Analysis spades v. 3.11.1 Yes Yes jsvander@ucdavis.edu Jean VanderGheynst Yes 27981239 Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 144124973 226576 186 12 259 20 SRX2557215 Unrestricted 0.0 Metagenome 3300039129 *Microbiome Permanent Draft Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA - cet2 University of Minnesota 3300039129 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic River Freshwater Unclassified Freshwater 44.917867 -93.128967 3606872 5737 5 0 3 0 0.0 Metagenome 3300007060 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge Cinachyra sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - cg24is University of New South Wales 3300007060 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au, e.botte@aims.gov.au; n.webster@aims.gov.au Nicole Webster, Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Cinachyra sp. (marine sponge) -9.8241 150.825833 77188439 173859 60 1 76 5 0.0 Metagenome 3300013763 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A15_65cm_0M University of Tennessee 3300013763 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 308088764 736329 120 4 244 5 SRX710560 0.0 Metagenome 3300006851 *Microbiome Permanent Draft Agricultural soil microbial communities from Utah and Georgia to study Nitrogen management Agricultural soil microbial communities from Georgia to study Nitrogen management - Poultry litter 2012 DOE Joint Genome Institute (JGI) 3300006851 Metagenome Analysis MEGAHIT v. 0.1.3 Yes Yes jeanette.norton@usu.edu Jeanette Norton No Environmental Terrestrial Agricultural land Soil Unclassified Agricultural soil 33.8834 -83.4195 1057759290 2453168 3110 45 4853 86 SRX2924376 Unrestricted 0.0 Metagenome 3300017949 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300017949 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1683542464 3607927 1183 112 1914 162 SRX4072332 Unrestricted 15.5 Metagenome 3300048443 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_140806.NP1 DOE Joint Genome Institute (JGI) 3300048443 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 744619617 1785351 604 96 875 182 Unrestricted 12.64 Metagenome 3300030672 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from healthy individual in Houston, USA - MG100176 University of Michigan 3300030672 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 29.76 -95.37 23937972 47816 42 0 96 0 0.0 Metagenome 3300010401 *Microbiome Permanent Draft Terrestrial soil microbial communities with and without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1 DOE Joint Genome Institute (JGI) 3300010401 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tiedjej@msu.edu James Tiedje No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 42.3938 -85.3708 5024911193 11440361 3076 189 5489 385 SRX3294818 Unrestricted 0.0 Metagenome 3300030099 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_124 - TARA_R100000697 CEA Genoscope 3300030099 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -9.1504 -140.5216 273951225 557312 31 0 42 0 0.0 Metagenome 3300038433 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - ETNP_6_300 (SPAdes) University of Arizona Genetics Core Tucson 3300038433 Metagenome Analysis spades v. 3.11.1 released by Simon Roux Yes Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Oceanic Marine Unclassified Marine 18.92 -104.89 48177051 77677 0 0 0 0 0.0 Metagenome 3300042269 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA MBR feed microbial communities from membrane bioreactor in Denver, Colorado, USA - FD_D140 DOE Joint Genome Institute (JGI) 3300042269 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Wastewater Mine water Industrial wastewater Produced water MBR feed 39.7823 -104.9101 466678408 714272 385 9 545 14 Unrestricted 19.89 Metagenome 3300005258 *Microbiome Permanent Draft Microbial communities on the surface of bentonite enhanced biochar Bentonite enhanced biochar microbial communities from Sydney, Australia Australian Centre for Ecogenomics 3300005258 Metagenome Analysis IDBA_UD released per submitter No Yes j.ye@student.unsw.edu.au, j.ye@uq.edu.au JUN YE Yes 28169988 Environmental Terrestrial Biochar Soil Agricultural land soil -33.917926 151.235347 162951842 282734 318 110 447 131 0.0 Metagenome 3300008217 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 DOE Joint Genome Institute (JGI) 3300008217 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 38.09 11.46 467190302 925402 294 0 437 0 SRX2753799 Unrestricted 0.0 Metagenome 3300026238 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from above oceans and continental USA - SDPR-004 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026238 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 3746956 10037 17 12 24 19 Unrestricted 0.0 Metagenome 3300019475 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 8 Autonomous University of Barcelona 3300019475 Metagenome Analysis SPAdes 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 12269449 21394 18 0 20 0 0.0 Metagenome 3300027143 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_8h DOE Joint Genome Institute (JGI) 3300027143 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 140313988 268848 122 8 155 12 SRX5245217 Unrestricted 17.55 Metagenome 3300025014 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-24 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025014 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 386007058 666685 343 5 510 8 SRX3198641 Unrestricted 0.0 Metagenome 7000000216 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 158944319 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000216 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2275655 2551 0 0 0 0 0.0 Metagenome 3300027696 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027696 Metagenome Analysis spades v. 3.11.1 Yes Yes loy@microbial-ecology.net; Michael.Pester@dsmz.de Alexander Loy; Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.1318 11.881 565808452 1150179 147 0 249 2 Unrestricted 0.0 Metagenome 2228664021 *Microbiome Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil v3 (version 3) DOE Joint Genome Institute (JGI) 2228664021 Metagenome Analysis Artifact filter, partition at k=32, assemble with Velvet at k19-45, Minimus2 released based on JGI ITS No Yes janet.jansson@pnnl.gov Janet Jansson Yes 30158906 Environmental Terrestrial Unclassified Soil Grasslands Soil 39.0042816 -77.1012173 647968790 1499399 32 0 366 0 Unrestricted 0.0 Metagenome 3300007715 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG S.751 DOE Joint Genome Institute (JGI) 3300007715 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 243223171 481064 336 96 567 144 SRX2753581 Unrestricted 6.59 Metagenome 3300070711 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lajas Experimental Station, Puerto Rico, USA - LAJA_004-M-20160912-COMP-DNA1 3300070711 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 1152810 4687 11 4 21 8 0.0 Metagenome 3300015601 *Microbiome Permanent Draft Wastewater microbial communities from the domestic sewers Wastewater microbial communities from domestic sewers in Singapore - Site B Nov Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300015601 Metagenome Analysis CLC Workbench released by JGI data releasing policy No Yes erinscm@nus.edu.sg Charmaine Ng No Engineered Wastewater Unclassified Sewage Unclassified Wastewater 1.28362 103.859825 100929025 157154 19 0 40 0 0.0 Metagenome 3300036319 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Shale gas microbial communities from Fort St. John, British Columbia, Canada - PROGRESS HHA DOE Joint Genome Institute (JGI) 3300036319 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back shale gas 57.0 -123.0 13137067 15591 23 0 30 0 SRX8356927 Unrestricted 841.3 Metagenome 3300042287 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME12May2009D11-rr0394 DOE Joint Genome Institute (JGI) 3300042287 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 760601949 1156341 182 27 245 41 Unrestricted 22.69 Metagenome 3300039096 *Microbiome Draft Microbial communities from various locations in Russia Sediment microbial communities from hot spring in Uzon Caldera, Kamchatka, Russia - 3437 Baltic Federal University 3300039096 Metagenome Analysis MEGAHIT v. 1.1.4 released by JGI data releasing policy Yes Yes kublanov.ilya@gmail.com Ilya V. Kublanov No Environmental Aquatic Hot (42-90C) Thermal springs Neutral sediment 54.498033 160.014367 6.1 130743041 221447 92 2 99 2 0.0 Metagenome 3300007768 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila suzukii male 5 gut Cornell University 3300007768 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy Yes Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila suzukii male adult gut 42.875296 -77.006403 432695199 458317 9 10 2 8 0.0 Metagenome 3300005860 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sulfidic aquatic microbial communities from Washburn Spring, Yellowstone National Park, USA - WS (SPADES assembly) (version 2) DOE Joint Genome Institute (JGI) 3300005860 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, binskeep@montana.edu; jim.fredrickson@pnnl.gov Natasha Ivanova, William P. Inskeep; Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Sulfidic aquatic 44.376 -110.69 391796779 608147 275 1 350 2 SRX2553558 Unrestricted 0.0 Metagenome 3300044738 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_15BS DOE Joint Genome Institute (JGI) 3300044738 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4337 -106.2481 850543397 1444166 322 12 517 17 SRX20649966 Unrestricted 17.4 Metagenome 3300001741 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Olavius algarvensis symbiont microbial communities from Tuscany, Italy - Type G ELBA extract 1 DOE Joint Genome Institute (JGI) 3300001741 Metagenome Analysis Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms symbiont 42.8072 10.1411 414690628 1200847 10 14 16 5 SRX2554372 Unrestricted 0.0 Metagenome 3300069603 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Mid-Atlantic, VA, USA - BLAN_002-M-20170713-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069603 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Farm Terrestrial soil 39.06026 -78.07164 8419484 27308 66 8 117 18 0.0 Metagenome 3300031972 *Microbiome Finished The variation of viral communities during algal boom from the coastal of Qingdao, China Marine viral communities from the Yellow sea, Qingdao, China - ZQ0712 Beijing Novogene Bioinformatics Technology Co., Ltd 3300031972 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes foodyqw_12@163.com Yang Qingwei No Environmental Aquatic Coastal Marine Unclassified marine 36.062 120.315 322793814 518489 87 3 125 4 0.0 Metagenome 3300002574 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Downstream of discharge Sample CS4-5 454 Life Sciences 3300002574 Metagenome Analysis Genomes released to public per request from Dong Li (May 30 2014) No Yes lidong460@gmail.com Dong Li No Environmental Aquatic River Freshwater Sediment Freshwater sediment 21.34876 40.487145 6-8 0 0 0 0 0 0 0.0 Metagenome 3300031394 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #594 DOE Joint Genome Institute (JGI) 3300031394 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 448829890 760332 121 29 169 44 SRX5649487 Unrestricted 38.92 Metagenome 3300050499 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Bulk soil microbial communities from a Populus tree surrounding site in Tennessee, USA - Soil MetaG P. deltoides SBSDD3 re-annotation DOE Joint Genome Institute (JGI) 3300050499 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Environmental Terrestrial Tree plantation Soil Unclassified Bulk soil 35.8443 -83.9607 1677166997 3932618 914 36 1741 56 SRX2840430 0.0 Metagenome 3300035553 *Microbiome Permanent Draft Lab enriched marine microbial communities from Beaufort Sea, Canada Lab enriched marine microbial communities from Beaufort Sea, Canada - MU1 Genome Quebec 3300035553 Metagenome Analysis MetaSpades v. 3.12.0 released by JGI data releasing policy Yes Yes arthi.ramachandran@hotmail.com Arthi Ramachandran No Environmental Aquatic Coastal Marine Unclassified marine 72.0 -150.0 14263466 23050 5 0 7 0 0.0 Metagenome 3300027031 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027031 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 91600004 253190 269 88 445 141 SRX1985398, SRX1985399, SRX2021676 Unrestricted 0.0 Metagenome 3300053727 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere DOE Joint Genome Institute (JGI) 3300053727 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.587955 -123.193022 415008363 816132 236 56 380 88 Unrestricted 10.81 Metagenome 3300044457 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 123-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044457 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.983 -107.0102 533673029 1382574 481 12 846 24 Unrestricted 8.81 Metagenome 3300001953 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Key West, Florida, USA - GS015 J. Craig Venter Institute (JCVI) 3300001953 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine 24.488333 -83.07 84693422 146422 94 2 129 5 0.0 Metagenome 2051223005 *Microbiome Permanent Draft Human fecal microbial communities from Orebro University Hospital, Sweden, of individuals with Crohns disease Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10373 University of Maryland School of Medicine 2051223005 Metagenome Analysis released per JGI data release policy No Yes cmfraser@som.umaryland.edu Claire Fraser No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 59.274717 15.230656 25401028 49637 0 0 0 0 0.0 Metagenome 3300025233 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025233 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.9082 -79.0499 146240556 186751 80 0 83 0 SRX1991097 Unrestricted 0.0 Metagenome 2037747002 *Microbiome Permanent Draft Coalbed water microbial communities from New Mexico, USA Coalbed microbial communities from New Mexico, USA - 454AllContigs1fnal Virginia Polytechnic Institute and State University 2037747002 Metagenome Analysis released per JGI data release policy No Yes biswarup@vt.edu Biswarup Mukhopadhyay No Environmental Aquatic Groundwater Freshwater Coalbed water Coalbed water 36.728056 -108.220833 14846617 24920 23 0 45 0 0.0 Metagenome 3300070551 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_006-M-20200709-COMP-DNA1 Battelle Memorial Institute 3300070551 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 32.898842 -87.446131 5.01-5.41 4198512 13933 42 4 56 11 0.0 Metagenome 3300036718 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B6.1_Sample6.Rodeo1.Well1132 DOE Joint Genome Institute (JGI) 3300036718 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 315535281 544504 268 4 448 2 SRX8355471 Unrestricted 40.73 Metagenome 3300007555 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555 DOE Joint Genome Institute (JGI) 3300007555 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 222304408 454976 188 49 267 92 SRX2753547 Unrestricted 0.0 Metagenome 3300028010 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA6 DOE Joint Genome Institute (JGI) 3300028010 Metagenome Analysis spades v. 3.11.1 Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 59.997 10.7902 21849679 63815 70 19 130 37 SRX5272048 Unrestricted 7.61 Metagenome 3300020154 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_20 DOE Joint Genome Institute (JGI) 3300020154 Metagenome Analysis spades v. 3.10.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.3049 -116.2547 415175613 915500 668 57 1181 97 SRX3936364 Unrestricted 26.14 Metagenome 3300003351 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 DOE Joint Genome Institute (JGI) 3300003351 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 51.62 -128.09 84103997 222846 220 50 346 80 SRX2575217 Unrestricted 0.0 Metagenome 3300034040 *Microbiome Permanent Draft Deception Metagenome Fumarole sediment microbial communities from Whalers Bay, Deception Island, Antarctica - WBB1 The Brazilian National Council for Scientific and Technological Development (CNPq) 3300034040 Metagenome Analysis IDBA-ud v. 1.1.1 released per Amanda Bendia -- GOLD-1013 No Yes amandagbendia@gmail.com Amanda Bendia No Environmental Aquatic Volcanic Marine Unclassified fumarole sediment -63.18 -60.67 52040082 67506 20 0 52 0 0.0 Metagenome 3300006253 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159510762 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006253 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 192684014 303330 210 0 224 0 0.0 Metagenome 3300036765 *Microbiome Permanent Draft Microbial communities from various locations in USA and France Sewage microbial communities from WWTP in Marseille, France - spike3 DOE Joint Genome Institute (JGI) 3300036765 Metagenome Analysis metaspades v. 3.13.0 Yes Yes twoyke@lbl.gov; lapennacchio@lbl.gov Tanja Woyke; Len Pennacchio No Engineered WWTP Raw wastewater Influent Municipal and sewage sewage 43.11 5.95 991470363 1484346 655 35 968 36 SRX8289088 Unrestricted 11.51 Metagenome 3300026325 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_09_30cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026325 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 859791525 1892150 487 22 819 47 SRX2726803 Unrestricted 0.0 Metagenome 3300017742 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 22 SPOT_SRF_2011-05-21 DOE Joint Genome Institute (JGI) 3300017742 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 308545844 714516 70 28 117 56 SRX7207134, SRX7207133 Unrestricted 0.0 Metagenome 3300049012 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - I25_A_RS (version 2) DOE Joint Genome Institute (JGI) 3300049012 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 236465113 508337 417 17 749 25 Unrestricted 0.0 Metagenome 3300050358 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - YNP_CreekBiofilm_3 DOE Joint Genome Institute (JGI) 3300050358 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 179433873 245750 88 7 106 10 Unrestricted 557.56 Metagenome 3300027188 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.709 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027188 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 138070350 321521 151 24 220 45 SRX2753567 Unrestricted 0.0 Metagenome 3300070669 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Virginia, USA - BLAN_003-M-20200716-COMP-DNA1 3300070669 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 2324245 8009 27 3 61 7 0.0 Metagenome 3300026297 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026297 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.73825 -123.6301 559885671 962114 263 3 412 1 SRX2562217 Unrestricted 0.0 Metagenome 3300002213 *Microbiome Permanent Draft Basalt sediment microbial communities from the East Pacific Rise Basalt sediment microbial communities from the East Pacific Rise Rocks 3300002213 Metagenome Analysis released by JGI data releasing policy No Yes esinger@lbl.gov Esther Singer No Environmental Aquatic Oceanic Marine Benthic Basalt sediment 9.725 -104.16 8 120330757 491615 103 11 257 10 0.0 Metagenome 3300055505 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.1C.10 SIP fraction DOE Joint Genome Institute (JGI) 3300055505 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 251375168 420669 243 15 390 28 Unrestricted 23.78 Metagenome 7000000602 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 159713063 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000602 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 10363706 16275 0 0 0 0 SRX024603, SRX024604, SRX025515, SRX025513 0.0 Metagenome 3300003655 *Microbiome Permanent Draft Arsenic contaminated sediment microbial communities from Roteang Village, Cambodia, amended with 13C-lactate Arsenic contaminated sediment microbial communities from Roteang Village, Cambodia, amended with 13C-lactate 3300003655 Metagenome Analysis released by JGI data releasing policy No Yes a.rizoulis@manchester.ac.uk, arizoulis@gmail.com Athanasios Rizoulis No Environmental Terrestrial Unclassified Deep subsurface Unclassified Arsenic contaminated sediment 11.5044 105.0336 1978262 4480 3 0 7 0 0.0 Metagenome 3300009523 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG DOE Joint Genome Institute (JGI) 3300009523 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes loy@microbial-ecology.net; Michael.Pester@dsmz.de Alexander Loy; Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.1318 11.881 804034670 1461251 290 4 470 6 Unrestricted 0.0 Metagenome 3300051021 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA River water microbial communities from Olympic Peninsula, Washington, USA - W_SEK1_D15 DOE Joint Genome Institute (JGI) 3300051021 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Aquatic River Freshwater Unclassified River water 48.165 -124.244 240403963 453656 320 76 517 123 Unrestricted 124.94 Metagenome 3300012146 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT400_2 DOE Joint Genome Institute (JGI) 3300012146 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8895 -106.9073 136760989 332639 274 16 625 27 SRX3368486 Unrestricted 0.0 Metagenome 3300003967 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Enrichment cultures from Harmful Algal Blooms in Lake Erie, HABS-00-39865 University of Michigan 3300003967 Metagenome Analysis IDBA-UD v1.1.1 released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lentic Freshwater Unclassified Freshwater -77.611214 163.119356 45849340 56466 33 0 27 0 0.0 Metagenome 3300026621 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized - NN339 (SPAdes) DOE Joint Genome Institute (JGI) 3300026621 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 70267 223 2 0 3 2 SRX1986736 Unrestricted 0.0 Metagenome 3300040382 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_007-M-20160809-COMP-DNA1 Battelle Memorial Institute 3300040382 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 5806925 17139 17 2 41 4 0.0 Metagenome 3300052906 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Wyoming, USA - M_L3_S1 DOE Joint Genome Institute (JGI) 3300052906 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 41.11606 -106.14926 217606281 407254 274 38 552 48 Unrestricted 22.02 Metagenome 3300021601 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L224-21m DOE Joint Genome Institute (JGI) 3300021601 Metagenome Analysis spades v. 3.11.1-check Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Unclassified anoxic zone freshwater 49.69 -93.718 498835313 1017986 413 8 659 15 SRX3984606 Unrestricted 18.3 Metagenome 3300003989 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_CordA_D2 DOE Joint Genome Institute (JGI) 3300003989 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 37.928627 -122.504829 788892924 2270808 741 5 1524 15 SRX7142815 Unrestricted 0.0 Metagenome 3300043018 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver small intestine microbial communities from Maple Ridge, British Columbia, Canada - Beaver5Small.Intestine1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043018 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Small intestine Digestive system Unclassified small intestine 49.18 -122.54 70442852 119426 2 2 6 4 SRX8346253 Unrestricted 50.69 Metagenome 3300019833 *Microbiome Permanent Draft Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil - Babi_C1 Center for Advanced Technologies in Genomics, Sao Paulo University 3300019833 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 15894901 32672 42 0 55 0 0.0 Metagenome 3300020266 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX556082-ERR598951) CEA Genoscope 3300020266 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 39.3599 19.4084 230911259 549371 276 4 382 15 0.0 Metagenome 3300036808 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - CB21_33.1 DOE Joint Genome Institute (JGI) 3300036808 Metagenome Analysis metaspades v. 3.13.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified Marine 74.0136 -139.5971 1537728718 2579196 1070 192 1650 307 SRX8132779 Unrestricted 15.33 Metagenome 3300050193 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_SEK1_5_to_RHK1 DOE Joint Genome Institute (JGI) 3300050193 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.154 -124.211 493608268 591634 149 49 221 74 Unrestricted 20.77 Metagenome 3300039335 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 258_M Beijing Genomics Institute (BGI) 3300039335 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 124204421 198471 108 2 206 1 ERX491034 0.0 Metagenome 3300060373 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210530_03_01 DOE Joint Genome Institute (JGI) 3300060373 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 825795433 1194003 204 143 261 184 Unrestricted 22.27 Metagenome 3300013980 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00968 Weill Cornell Medical College 3300013980 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.82 8441030 14075 8 0 16 0 SRX822930 0.0 Metagenome 3300070408 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_042-M-20200728-COMP-DNA1 3300070408 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 25779620 79574 84 9 199 15 0.0 Metagenome 3300070687 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_006-O-20190828-COMP-DNA1 3300070687 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 52014817 142978 49 5 86 8 0.0 Metagenome 3300043065 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - CCW_050217 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043065 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.9035 -89.3341 5916892 16701 39 14 73 21 SRX9381656 Unrestricted 94.78 Metagenome 3300039228 *Microbiome Permanent Draft Deep subsurface microbial community underneath the Deccan traps, India Deep subsurface rock microbial communities from Deccan Traps, India - C1 CeGaT 3300039228 Metagenome Analysis MEGAHIT v. 1.2.9 released by JGI data releasing policy No Yes sarpinaki@yahoo.com Pinaki Sar No Environmental Terrestrial Rock Deep subsurface Unclassified deep subsurface rock 17.299167 73.738611 1500 to 1600 2733414 5333 14 3 19 11 0.0 Metagenome 3300009080 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759 DOE Joint Genome Institute (JGI) 3300009080 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 1277420817 2482188 1458 277 2189 480 SRX2753549 Unrestricted 0.0 Metagenome 3300010319 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 275m metaG (version 2) DOE Joint Genome Institute (JGI) 3300010319 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; sean.crowe@ubc.ca Ramunas Stepanauskas; Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Anoxic lake water -2.0288 29.1756 887649270 1749082 975 6 1640 9 SRX2525294 Unrestricted 0.0 Metagenome 3300013684 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00580 Weill Cornell Medical College 3300013684 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.98 15601437 24769 7 0 19 0 SRX822547 0.0 Metagenome 3300039908 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_002-M-38-8-20131024-GEN-DNA1 Argonne National Laboratory 3300039908 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 25614784 58744 37 2 58 3 ERX2133998 0.0 Metagenome 3300043786 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Sep2012-rr0302 DOE Joint Genome Institute (JGI) 3300043786 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1044534481 1513458 348 69 495 80 Unrestricted 17.3 Metagenome 3300015305 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_12JUL2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015305 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 154031893 280835 5 33 9 33 SRX3923569 Unrestricted 10.11 Metagenome 3300044797 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Soil microbial communities from peatland in Alberta, Canada - SB-12-nonsedgy 0-10 cm DOE Joint Genome Institute (JGI) 3300044797 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4549 -114.8842 1114715443 1745050 357 24 564 34 Unrestricted 12.09 Metagenome 3300065517 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 786 in Hanna, Alberta, Canada - S00JY_0408 Microbiome Insights 3300065517 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.31527169 -112.0508909 45630285 67423 31 1 52 4 0.0 Metagenome 3300056777 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FL_03 DOE Joint Genome Institute (JGI) 3300056777 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.407926 -82.180036 131190965 202820 3 6 10 5 Restricted 273.74 Metagenome 3300069447 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_060-O-20170706-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069447 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 615886190 1587167 314 38 574 69 0.0 Metagenome 3300000310 *Microbiome Draft Wetland microbial communities from Twitchell Island in the Sacramento Delta Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk v1 (version 2) DOE Joint Genome Institute (JGI) 3300000310 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes stringe@lbl.gov Susannah Tringe Yes 25991679 Environmental Aquatic Wetlands Marine Sediment Wetland 38.107057 -121.647578 120209763 331296 364 4 662 12 Unrestricted 0.0 Metagenome 3300009104 *Microbiome Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um Georgia Genomics Facility 3300009104 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 1733215808 2281540 780 47 915 47 0.0 Metagenome 3300027571 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027571 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.234 -123.9135 359314287 760027 291 88 459 165 SRX2838062 Unrestricted 24.11 Metagenome 3300024355 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepB_8h DOE Joint Genome Institute (JGI) 3300024355 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 158024413 355057 219 21 282 44 SRX4547331 Unrestricted 11.33 Metagenome 3300023240 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #870 DOE Joint Genome Institute (JGI) 3300023240 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 125847023 265257 52 0 87 0 SRX4397200 Unrestricted 23.58 Metagenome 3300047313 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 soil DOE Joint Genome Institute (JGI) 3300047313 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121521 -123.27199 4.83 984032966 1676992 396 35 689 34 Unrestricted 14.62 Metagenome 3300051652 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TS32 (version 2) DOE Joint Genome Institute (JGI) 3300051652 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.4139 54441888 54695 82 2 82 1 SRX12729177, SRX12729176, SRX12729178 Restricted 0.0 Metagenome 3300001566 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-35cm)- 6 week illumina University of Tennessee 3300001566 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 162888768 857932 836 50 1435 97 0.0 Metagenome 3300007805 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 508703490 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007805 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 113361196 150367 95 0 132 0 0.0 Metagenome 3300004223 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 80_HOW10 DOE Joint Genome Institute (JGI) 3300004223 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 49007636 108326 45 12 94 16 SRX2721064 Unrestricted 0.0 Metagenome 7000000440 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763435843 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000440 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 98474719 177014 0 0 0 0 0.0 Metagenome 3300026052 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026052 Metagenome Analysis spades v. 3.11.1 released Yes Yes jzz0026@lbl.gov; sgtringe@lbl.gov Jinglie Zhou; Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.05241603 -121.76907401 53088475 143410 155 0 256 0 SRX7182403 Unrestricted 0.0 Metagenome 3300027449 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G10K5-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300027449 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 3885450 12904 48 3 98 2 SRX1991296 Unrestricted 0.0 Metagenome 3300059756 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1549A-3 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059756 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2322 -123.8817 138742047 293179 154 31 260 49 SRX2753719 Unrestricted 0.0 Metagenome 3300070801 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_008-M-20180716-COMP-DNA1 3300070801 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 6091385 19679 56 4 102 7 0.0 Metagenome 3300006090 *Microbiome Finished Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 - sample NBP124 Major University, Chile 3300006090 Metagenome Analysis IDBA-UD in reveiw for publication No Yes oulloa@udec.cl Osvaldo Ulloa Yes 29575531 Environmental Aquatic Oceanic Marine Unclassified Marine -13.71 -81.389 130383783 297077 67 13 116 26 0.0 Metagenome 3300037127 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0819U20re DOE Joint Genome Institute (JGI) 3300037127 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.039 239622715 398210 174 4 323 3 SRX8670574 Unrestricted 14.55 Metagenome 3300031112 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSL A.R2 DOE Joint Genome Institute (JGI) 3300031112 Metagenome Analysis spades v. 3.12.0 Yes Yes icelab@berkeley.edu Steven Lindow No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 37.8864 -122.2981 536023527 836477 356 25 512 32 SRX5654165 Unrestricted 82.45 Metagenome 3300011233 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00485 Weill Cornell Medical College 3300011233 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.82 -73.89 47842592 71526 29 0 45 0 SRX822454 0.0 Metagenome 3300003899 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 m-RNA DAY 78 University of Sao Paulo, Virginia Bioinformatics Institute 3300003899 Metagenome Analysis SoapDeNovo released per PI's request No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 23090044 53303 13 43 35 102 0.0 Metagenome 3300033444 *Microbiome Permanent Draft Meromitic Lake A Freshwater microbial communities from meromitic lake A, Ellesmere Island, Canada - Sample 55m re-analysis2 Laval University 3300033444 Metagenome Analysis Megahit v. 1.0.5 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 82.99445 -75.443367 1510132444 3649506 962 8 1703 4 0.0 Metagenome 3300002034 *Microbiome Permanent Draft Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease - BBAY58 3300002034 Metagenome Analysis IDBA-UD + SOAPdenovo + GAA released by JGI data releasing policy No Yes t.thomas@unsw.edu.au Torsten Thomas No Host-associated Algae Ectosymbionts Red algae Unclassified Delisea pulchra -33.59 151.13 494775700 1837218 183 77 437 149 0.0 Metagenome 3300038666 *Microbiome Draft Saline water viral communities of the coast of Qinghai Lake, Qinghai province, China Saline water viral communities of the coast of Qinghai Lake, Qinghai province, China - QHH6 Beijing Novogene Bioinformatics Technology Co., Ltd 3300038666 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes 1054738805@qq.com Chengxiang Gu No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 37.46655759 95.55735101 62188983 150158 80 15 185 26 0.0 Metagenome 3300035046 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B4.2_Sample4.Rodeo2.Well667 DOE Joint Genome Institute (JGI) 3300035046 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 94073907 161370 111 0 165 0 SRX8353572 Unrestricted 107.45 Metagenome 3300041407 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 DOE Joint Genome Institute (JGI) 3300041407 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.8942 -103.685 416558707 1030250 481 58 878 91 SRX14828572 Unrestricted 13.21 Metagenome 3300036401 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 DOE Joint Genome Institute (JGI) 3300036401 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1125 -122.987 3936160935 8780775 1931 158 3191 242 SRX8289149 Unrestricted 8.0 Metagenome 3300002537 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C49A8_80 DOE Joint Genome Institute (JGI) 3300002537 Metagenome Analysis Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 113793152 261924 73 10 113 30 SRX1990967 Unrestricted 0.0 Metagenome 3300001314 *Microbiome Permanent Draft Bioengineered switchgrass rhizosphere microbial community from Knoxville, Tennessee, USA Bioengineered switchgrass rhizosphere microbial communities from Knoxville, Tennessee, USA - 15-2 3300001314 Metagenome Analysis released by JGI data releasing policy No Yes jliu36@utk.edu Jiang Liu No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 35.98 -83.92 1567407 5366 9 0 23 1 0.0 Metagenome 3300016672 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water catchment in Singapore - WC_Site 1a, Oct Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016672 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 1.35 103.87 94448372 116311 12 1 12 1 0.0 Metagenome 3300045036 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Plains ecozone, Canada - Lake 04-619 Genome Quebec 3300045036 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 62.556145 -116.433386 955932662 2307506 709 142 1342 226 0.0 Metagenome 3300009788 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00157 metaG DOE Joint Genome Institute (JGI) 3300009788 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Oceanic Marine Sediment Deep subsurface 1.759 96.774 2275415232 4801977 1363 9 2312 16 SRX2524380 Unrestricted 0.0 Metagenome 3300029975 *Microbiome Permanent Draft Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil - Babi_C1 Reanalysis Center for Advanced Technologies in Genomics, Sao Paulo University 3300029975 Metagenome Analysis metaSPAdes v. 3.12.0 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 26331372 50124 49 0 65 0 0.0 Metagenome 3300020221 *Microbiome Permanent Draft Freshwater microbial communities from Lake Tanganyika, Tanzania Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015036 Kigoma Deep Cast 100m DOE Joint Genome Institute (JGI) 3300020221 Metagenome Analysis spades v. 3.10.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater lake -4.9054 29.4853 1912173096 3634525 906 78 1460 120 SRX4821474 Unrestricted 33.15 Metagenome 3300043434 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Golan Heights, Israel - jordanrivershai3_2019_sw_WHONDRS-S19S_0058 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043434 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 32.8993 35.6136 518008168 843612 255 11 392 21 Unrestricted 31.38 Metagenome 3300013347 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01174 Weill Cornell Medical College 3300013347 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.68 -73.87 29549712 41996 19 3 14 6 SRX823129 0.0 Metagenome 3300013916 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00703 Weill Cornell Medical College 3300013916 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.84 -73.93 13116977 20713 8 0 16 0 SRX822670 0.0 Metagenome 3300002811 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A2-10 DOE Joint Genome Institute (JGI) 3300002811 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 1041552 3455 31 0 61 1 SRX1991118 Unrestricted 0.0 Metagenome 3300041870 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - TR_37_wk_5 DOE Joint Genome Institute (JGI) 3300041870 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9999 -107.084 113369122 334842 197 8 382 8 SRX14809934 Unrestricted 6.26 Metagenome 3300020697 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 22MAY2008 hypolimnion DOE Joint Genome Institute (JGI) 3300020697 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 83406058 159326 76 9 101 9 Unrestricted 0.0 Metagenome 3300041562 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_442 MetaG AgResearch, New Zealand, Mosgeil 3300041562 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 452495523 682991 171 21 527 61 0.0 Metagenome 3300071049 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_031-M-20160825-COMP-DNA1 3300071049 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 6817290 21647 44 3 72 5 0.0 Metagenome 3300034783 *Microbiome Permanent Draft Stable isotope and metagenomic profiling of a methanogenic naphthalene-degrading enrichment culture Enriched microbial communities from a natural gas condensate-contaminated anoxic aquifer near Ft. Lupton, CO, USA - 13C-labelled, 2 mo incubation MSP University of Calgary 3300034783 Metagenome Analysis spades v. 3.12.0 released per submitter Yes Yes lmgieg@ucalgary.ca; courtney.toth@utoronto.ca Lisa Gieg; Courtney Toth No Environmental Terrestrial Aquifer Deep subsurface Unclassified anoxic aquifer 40.3921 -104.7158 67359480 111133 46 2 56 1 0.0 Metagenome 3300011438 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT500_2 DOE Joint Genome Institute (JGI) 3300011438 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9779 -107.0032 487919973 1089079 370 12 756 30 SRX3539350 Unrestricted 0.0 Metagenome 3300006798 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series 2015_5_14 DOE Joint Genome Institute (JGI) 3300006798 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 5.8 14161853 46036 486 3 999 7 SRX2925235 Unrestricted 0.0 Metagenome 3300055532 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.17W.11 SIP fraction DOE Joint Genome Institute (JGI) 3300055532 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 145758268 264525 67 4 127 5 Unrestricted 13.21 Metagenome 3300043550 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime ecozone, Canada - Lake 07-025 Genome Quebec 3300043550 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.639494 -65.707216 689383501 1462748 343 41 554 87 0.0 Metagenome 7000000635 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000635 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 59774460 104185 0 0 0 0 0.0 Metagenome 3300042168 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Eunicella verrucosa from Algarve, Portugal - EV02H v2 Molecular Research LP (MR DNA) 3300042168 Metagenome Analysis Metawrap workflow v. 1.0.8 released by JGI data releasing policy Yes Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 8610243 8211 2 0 4 4 0.0 Metagenome 3300005159 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgLPB DOE Joint Genome Institute (JGI) 3300005159 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 189314985 647563 377 7 726 23 SRX2521130 Unrestricted 0.0 Metagenome 3300025497 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR11_8A_Apr (SPAdes) DOE Joint Genome Institute (JGI) 3300025497 Metagenome Analysis spades v. 3.11.1 Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 62172879 94867 47 0 64 0 SRX3317983 Unrestricted 0.0 Metagenome 3300003782 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_4/24/2008_ DNA DOE Joint Genome Institute (JGI) 3300003782 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 108468982 195115 149 9 248 13 SRX2518135 Unrestricted 0.0 Metagenome 3300008073 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 158883629 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008073 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 130859112 208415 108 0 137 0 0.0 Metagenome 3300042115 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_080116_2642 DOE Joint Genome Institute (JGI) 3300042115 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.9457 -103.6985 142228368 333160 215 10 350 18 Unrestricted 11.7 Metagenome 3300012827 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - HID1975K_E6 MG DOE Joint Genome Institute (JGI) 3300012827 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie Yes 29545786 Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 83606574 122209 87 0 102 0 SRX3564646 Unrestricted 0.0 Metagenome 3300048881 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from Gulf of California, Mexico - CTD-FK190211-07-500m-0.1 DOE Joint Genome Institute (JGI) 3300048881 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 27.583 -111.46468 760093050 1220006 356 7 487 9 Unrestricted 50.06 Metagenome 2124908003 *Microbiome Finished Trichechus manatus rumen microbial communities from Placencia lagoon, Belize Metagenome of rumen microbiota from manatee Trichechus manatus (dereplicated) University of Illinois, Urbana-Champaign 2124908003 Metagenome Analysis No assembly released per JGI data release policy No Yes Yuejian Mao No Host-associated Mammals Stomach Digestive system Rumen Trichechus manatus rumen 16.5 -88.366667 603813106 1768598 2006 33 3117 0 0.0 Metagenome 3300056590 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Texas, USA - pringlecreek_2019_sed_WHONDRS-S19S_0025 DOE Joint Genome Institute (JGI) 3300056590 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 33.37853 -97.78275 855469422 2174243 1009 23 1909 50 Restricted 0.0 Metagenome 3300011757 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00648 Weill Cornell Medical College 3300011757 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.78 -73.96 39618621 55236 16 0 27 0 SRX822615 0.0 Metagenome 3300026139 *Microbiome Permanent Draft Anaerobic reactors microbiome study Activated sludge microbial communities from lab. scaled anaerobic digester in Belvaux, Luxembourg - ACS0-1 University of Luxembourg 3300026139 Metagenome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 49.506216 5.943617 170350545 214344 53 3 176 20 0.0 Metagenome 3300026666 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN351 (SPAdes) DOE Joint Genome Institute (JGI) 3300026666 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 7836755 23434 60 4 109 5 SRX3311800 Unrestricted 0.0 Metagenome 3300040988 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark - 1536-PRJ1066-RL-Sewage-90_S3_L001 Technical University of Denmark 3300040988 Metagenome Analysis Yes Yes No Engineered Wastewater Unclassified Sewage Unclassified Sewage 55.694986 12.615026 19978816 43486 98 0 164 1 ERX1584031 0.0 Metagenome 3300001521 *Microbiome Permanent Draft Sheep rumen microbial communities from New Zealand from high and low methane emitting sheep Sheep rumen microbial communities from New Zealand - Rank46_high DOE Joint Genome Institute (JGI) 3300001521 Metagenome Analysis Velvet Released because these are assemblies from SRA data No Yes janine.kamke@agresearch.co.nz, janine.kamke@uni-wuerzburg.de Janine Kamke No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen -40.352 175.608 179244993 375030 471 48 631 73 0.0 Metagenome 3300002465 *Microbiome Permanent Draft Freshwater lake biofilm microbial communities from Frasassi caves, Italy in anoxic conditions Anoxic frehswater biofilm from Lago dell Orsa, Frasassi caves, Italy Pennsylvania State University 3300002465 Metagenome Analysis released per JGI data release policy Yes Yes jlm80@psu.edu Jennifer Macalady No Environmental Aquatic Microbialites Freshwater Unclassified Freshwater lake 43.3833 12.95 631785215 1386553 566 8 1062 3 0.0 Metagenome 3300040491 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone Northern Range (Frog Rock), Northern Rockies, WY, USA - YELL_012-M-20180709-COMP-DNA1 Battelle Memorial Institute 3300040491 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 44.95348 -110.53914 3703507 11811 24 7 45 7 0.0 Metagenome 3300049270 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA21 DOE Joint Genome Institute (JGI) 3300049270 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 271719295 684647 351 2 681 6 Unrestricted 7.31 Metagenome 3300037846 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_12 DOE Joint Genome Institute (JGI) 3300037846 Metagenome Analysis metaspades v. 3.13.0 Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 2790998743 4380967 402 17 697 28 SRX9140457 Unrestricted 13.79 Metagenome 3300019380 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS848 IDBA reassembly renamed Marine Biological Laboratory 3300019380 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow hydrothermal vent diffuse flow 18.376929 -81.797906 6.65 48114812 64539 19 1 42 3 0.0 Metagenome 3300007832 *Microbiome Permanent Draft Clones from fosmidial library constructed using mangrove sediment Mangrove sediment microbial communities from Bertioga, Sao Paulo, Brazil - Clones from fosmid library, F7_contig1 Molecular Research LP (MR DNA) 3300007832 Metagenome Analysis IDBA released per JGI data release policy No Yes luc.g.cabral@gmail.com Luc?lia Cabral, Lucelia Cabral No Environmental Aquatic Unclassified Sediment Unclassified sediment -23.8553 -46.1394 22998 20 0 0 0 0 0.0 Metagenome 3300059364 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.20W.11 SIP fraction DOE Joint Genome Institute (JGI) 3300059364 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 158262448 288416 109 34 220 61 Unrestricted 11.19 Metagenome 3300049345 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CDF3 DOE Joint Genome Institute (JGI) 3300049345 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 321447007 880169 415 7 789 12 Unrestricted 7.0 Metagenome 3300032050 *Microbiome Permanent Draft Freshwater fungal communities from various locations Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122 DOE Joint Genome Institute (JGI) 3300032050 Metagenome Analysis spades v. 3.12.0 Yes Yes tyjames@umich.edu Timothy Y. James No Environmental Aquatic Lake Freshwater Lake biofilm freshwater 41.7464 -83.3444 2686129887 5343094 988 198 1366 308 SRX6420482 Unrestricted 21.71 Metagenome 3300014531 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 640_4M Beijing Genomics Institute (BGI) 3300014531 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 86605251 103249 17 0 60 0 ERX491296 0.0 Metagenome 3300051785 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water microbial communities from Sandhills, Nebraska, United States - NSL_Island_2020_MMG DOE Joint Genome Institute (JGI) 3300051785 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.7342 -102.4104 1581612442 2428884 486 24 618 36 Unrestricted 24.84 Metagenome 3300035201 *Microbiome Permanent Draft Seawater and sediment microbial communities from various locations Seawater microbial communities from eastern tropical North Pacific Ocean - AMALJGI-DNA-1 DOE Joint Genome Institute (JGI) 3300035201 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bbw@princeton.edu Bess Ward No Environmental Aquatic Oceanic Marine Unclassified seawater 18.6893 -104.4164 986718607 2128294 679 354 1091 583 SRX8296521 Unrestricted 12.84 Metagenome 3300038621 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site1_salt_MV_2 DOE Joint Genome Institute (JGI) 3300038621 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Salt marsh microbial mat 20.7609 58.6478 532227514 773328 221 8 335 11 SRX9169476 Unrestricted 32.45 Metagenome 3300002418 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP09-I1 3300002418 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300031466 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Sorghum-adapted microbial communities enriched on wild type (WT) sorghum from Joint BioEnergy Institute, Emeryville, California, United States - WT_Day14_5 DOE Joint Genome Institute (JGI) 3300031466 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 181443380 254770 243 1 234 0 SRX5661265 Unrestricted 140.3 Metagenome 3300037795 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Freshwater microbial communities from Lake Michigan, Michigan, United State - MI_BH16_G03 metaG DOE Joint Genome Institute (JGI) 3300037795 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.6 -86.9166 393774684 835628 166 18 260 30 SRX9146687 Unrestricted 16.38 Metagenome 3300027704 *Microbiome Permanent Draft Marine microbial communities from the West Antarctic Peninsula, for metatranscriptomic analysis Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027704 Metagenome Analysis spades v. 3.11.1 Yes Yes mattcott@udel.edu Matthew T. Cottrell No Environmental Aquatic Coastal Marine Unclassified Marine -64.8156 -64.0406 628331907 1265043 144 4 213 9 SRX2864353 Unrestricted 0.0 Metagenome 3300070344 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_072-O-20200715-COMP-DNA1 3300070344 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 34580037 102336 51 18 94 26 0.0 Metagenome 3300045227 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_5_D DOE Joint Genome Institute (JGI) 3300045227 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 164960430 199589 96 1 115 2 Unrestricted 131.59 Metagenome 3300000386 *Microbiome Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine microbial community from Union City, CA, USA - Pond 1C Liquid 1 DOE Joint Genome Institute (JGI) 3300000386 Metagenome Analysis released based on JGI ITS Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Salt pond 37.569083 -122.103267 100432077 247601 205 15 352 24 Unrestricted 0.0 Metagenome 3300048607 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mississippi River, Mississippi, USA - NASQAN2012_118 DOE Joint Genome Institute (JGI) 3300048607 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 32.3397 -90.9125 53004823 142245 120 29 222 61 Unrestricted 0.0 Metagenome 3300028808 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2 DOE Joint Genome Institute (JGI) 3300028808 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 1138598378 2516230 348 41 584 57 SRX5355871 Unrestricted 0.0 Metagenome 3300014264 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D2_rd DOE Joint Genome Institute (JGI) 3300014264 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.197227 -122.010124 302794492 721507 379 7 710 15 SRX7181211 Unrestricted 0.0 Metagenome 3300043710 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - Rondonia_Forest_2_B100m DOE Joint Genome Institute (JGI) 3300043710 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.134 -62.889 776019925 2003653 287 7 599 9 Unrestricted 9.15 Metagenome 3300026875 *Microbiome Permanent Draft The Hungate 1000. A catalogue of reference genomes from the rumen microbiome. Rumen microbial communities from New Zealand - Rumen Methanol Enrichment MEC1 Co-Culture (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026875 Metagenome Analysis spades v. 3.11.1 Yes Yes bill.kelly.donvis@gmail.com William Kelly No Host-associated Mammals Stomach Digestive system Rumen Rumen -40.355 175.6117 7141791 6777 10 1 9 2 SRX2753512 Unrestricted 0.0 Metagenome 3300015332 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_31MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015332 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 209551049 348280 5 86 12 151 SRX3922899 Unrestricted 7.73 Metagenome 3300011831 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00732 Weill Cornell Medical College 3300011831 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.71 -74.0 43977873 63215 16 0 26 0 SRX822699 0.0 Metagenome 3300045691 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_2_C DOE Joint Genome Institute (JGI) 3300045691 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 141674467 179755 94 1 116 2 Unrestricted 85.73 Metagenome 3300029603 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36056 Beijing Genomics Institute (BGI) 3300029603 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 188138562 248615 191 2 247 1 0.0 Metagenome 3300012334 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100303 University of Pennsylvania 3300012334 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17860107 46925 21 0 27 0 SRX756598 0.0 Metagenome 3300042447 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Jun2016-rr0073 DOE Joint Genome Institute (JGI) 3300042447 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 704121895 1063051 206 39 260 47 Unrestricted 22.22 Metagenome 3300006501 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 764487809 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300006501 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 6093461 10740 8 0 12 0 SRX024869, SRX098549 0.0 Metagenome 3300070923 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dead Lake, Alabama, USA - DELA_014-M-20190624-COMP-DNA1 3300070923 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 13523077 43168 63 9 104 10 0.0 Metagenome 3300011517 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00758 Weill Cornell Medical College 3300011517 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.73 -73.98 17407625 27164 21 2 24 5 SRX822724 0.0 Metagenome 3300043663 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 366-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043663 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9916 -107.0649 325169042 839663 321 39 587 66 Unrestricted 7.3 Metagenome 3300005269 *Microbiome Draft Switchgrass rhizosphere microbial communities from Michigan, USA Bulk soil microbial communities from switchgrass field near Rose Lake, East Lansing, Michigan, USA - RL3 Bulk Soil v2 (version 2) DOE Joint Genome Institute (JGI) 3300005269 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes tiedjej@msu.edu James Tiedje No Environmental Terrestrial Agricultural land Soil Bulk soil Bulk soil 42.794771 -84.393804 27244178 95969 110 3 187 5 Unrestricted 0.0 Metagenome 3300042258 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Produce water microbial communities from Denver, Colorado, USA - PW_D56 DOE Joint Genome Institute (JGI) 3300042258 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Wastewater Mine water Industrial wastewater Produced water Produced water 39.7823 -104.9101 418526077 665650 340 4 464 7 Unrestricted 21.91 Metagenome 3300025523 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-5-D (SPAdes) DOE Joint Genome Institute (JGI) 3300025523 Metagenome Analysis spades v. 3.11.1 Yes Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 176331619 379195 211 37 312 55 SRX2568493 Unrestricted 0.0 Metagenome 3300000208 *Microbiome Draft Feedstock adapted compost microbial communities from Newby Island compost facility, Milpitas CA Feedstock adapted compost microbial communities from Newby Island compost facility, Milpitas, CA, USA - Passage 4_AFX DOE Joint Genome Institute (JGI) 3300000208 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Solid waste Composting Feedstock Unclassified Feedstock adapted compost 37.454581 -121.928712 177830987 269848 175 3 228 8 Unrestricted 0.0 Metagenome 3300004185 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG13_big_fil_rev_8/21/14_2.50 DOE Joint Genome Institute (JGI) 3300004185 Metagenome Analysis MEGAHIT v. 0.2.0 revert back to private per Christa Yes Yes jbanfield@berkeley.edu, jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield, Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 601162568 1452160 1013 89 1801 142 SRX3348157 Unrestricted 0.0 Metagenome 3300027333 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Colum_RepA_8d DOE Joint Genome Institute (JGI) 3300027333 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 146318607 287760 100 11 141 14 SRX5245319 Unrestricted 17.99 Metagenome 3300027678 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027678 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 446326696 992132 248 22 450 47 SRX3312098 Unrestricted 0.0 Metagenome 3300049329 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC12 DOE Joint Genome Institute (JGI) 3300049329 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 93577444 241441 244 4 539 6 Unrestricted 15.88 Metagenome 3300041581 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_495 MetaG AgResearch, New Zealand, Mosgeil 3300041581 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1977295639 4121283 312 58 1268 79 0.0 Metagenome 3300000928 *Microbiome Permanent Draft Freshwater and marine microbial communities from the Columbia River, USA, of estuaries and plumes across salinity gradients Marine plume microbial communities from the Columbia River - 25 PSU University of Maryland 3300000928 Metagenome Analysis released per PI's request No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato Yes 26536246 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Freshwater and marine 46.233 -124.16 465382374 999698 88 32 291 66 0.0 Metagenome 3300021791 *Microbiome Permanent Draft Characterization of microbial community from Mariana Back Arc Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer Marine Biological Laboratory 3300021791 Metagenome Analysis IDBA-UD Trembath-Reichert et al. ?Active subseafloor microbial communities from Mariana back-arc venting fluids share metabolic strategies across different thermal niches and taxa?, ISMEJ 2019 No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Hydrothermal vent fluids 21.3250983 144.19162955 753242140 1662468 516 69 800 122 0.0 Metagenome 3300039078 *Microbiome Permanent Draft Marine coastal soil microbial communities from Mangrove ecosystem in Kerala, India Marine coastal soil microbial communities from Mangrove ecosystem in Kerala, India - PYN Central University of Kerala 3300039078 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Unclassified Soil Unclassified Marine coastal soil 8.5 76.7 14781785 32491 40 2 65 1 0.0 Metagenome 3300015260 *Microbiome Permanent Draft Seawater microbial communities from hydrothermal vent in East China Sea, Taiwan, China Seawater microbial communities from hydrothermal vent in East China Sea, Taiwan, China - gui-2014 surface metaG Shanghai Hanyu Bio-Tech Co., Ltd 3300015260 Metagenome Analysis SOAPdenovo v2.04 released by JGI data releasing policy No Yes zhanglianbao425@outlook.com lin zhang No Environmental Aquatic Hydrothermal vents Marine Unclassified seawater 25.0 128.0 107426491 392608 16 5 74 4 0.0 Metagenome 3300001475 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN102 DOE Joint Genome Institute (JGI) 3300001475 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 39.23550963 -121.2836963 41193602 130421 512 48 900 79 SRX1986605, SRX1986606 Unrestricted 0.0 Metagenome 3300012095 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from Florida, USA - TSFL039 MetaG DOE Joint Genome Institute (JGI) 3300012095 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 28.7103 -81.4846 49200391 81586 80 75 98 159 SRX3539482 Unrestricted 0.0 Metagenome 3300028084 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T100 DOE Joint Genome Institute (JGI) 3300028084 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 196423122 290283 74 6 108 12 SRX8128128, SRX8128127 Unrestricted 0.0 Metagenome 3300034052 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A1A4.2 DOE Joint Genome Institute (JGI) 3300034052 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 246400418 698573 446 7 783 13 SRX7658846 Unrestricted 6.85 Metagenome 3300003761 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 DOE Joint Genome Institute (JGI) 3300003761 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 124390723 181261 91 0 138 0 SRX2770678 Unrestricted 0.0 Metagenome 3300036569 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C3-1B DOE Joint Genome Institute (JGI) 3300036569 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 50432549 166653 176 3 308 7 SRX8817125 Unrestricted 3.96 Metagenome 3300030124 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces viral communities from healthy individual in Ann Arbor, USA - MG100113 University of Michigan 3300030124 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 42.28 -83.74 6132240 10624 5 0 7 0 0.0 Metagenome 3300017750 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 28 SPOT_SRF_2011-11-29 DOE Joint Genome Institute (JGI) 3300017750 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 315775737 754402 80 63 128 141 SRX5471784, SRX5471786, SRX5471785 Unrestricted 0.0 Metagenome 3300038783 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog35 BILS 3300038783 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 5349198 15030 10 2 27 6 ERX1594857 0.0 Metagenome 3300033072 *Microbiome Finished Gwangju Wastewater Treatment Plant Virome, South Korea Raw sewage viral community from Gwangju wastewater treatment plant, Gwangju, South Korea - GWWTP-input v.1 Macrogen 3300033072 Metagenome Analysis SPAdes v. 3.10.1 released by JGI data releasing policy No Yes chojc@inha.ac.kr Jang-Cheon Cho No Engineered WWTP Unclassified Wastewater Unclassified Wastewater 35.088441 126.793113 28350153 40587 0 0 0 0 0.0 Metagenome 3300040326 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lajas Experimental Station, Atlantic Neotropical, PR, USA - LAJA_042-M-20160914-COMP-DNA1 Battelle Memorial Institute 3300040326 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 18.02125 -67.0769 4880093 13770 12 0 23 0 0.0 Metagenome 3300048570 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert microbial communities from Antarctic Dry Valleys - Maria 594 DOE Joint Genome Institute (JGI) 3300048570 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Sand Soil Desert sand -78.1229 164.1116 377422288 734589 209 0 381 0 Unrestricted 0.0 Metagenome 3300005287 *Microbiome Permanent Draft Hoatzin crop microbial communities from Cojedes, Venezuela Hoatzin crop microbial communities from Cojedes, Venezuela - Epithelial fraction 12 v2 (version 2) DOE Joint Genome Institute (JGI) 3300005287 Metagenome Analysis MeGAMerge version 0.9b released based on JGI ITS Yes Yes sgtringe@lbl.gov, maria.dominguez1@upr.edu; fgodoyvitorino@gmail.com Susannah Tringe, Maria Gloria Dominguez-Bello; Filipa Godoy Vitorino No Host-associated Birds Esophagus Digestive system Crop Hoatzin crop 8.956944 -68.299167 1305838063 2026644 156 6 208 15 Unrestricted 0.0 Metagenome 3300007759 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 2.7-0.2um, replicate a Georgia Genomics Facility 3300007759 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 322519648 415979 153 0 204 0 0.0 Metagenome 3300048862 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD17 DOE Joint Genome Institute (JGI) 3300048862 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.347657 -119.2808 59368012 74658 5 6 9 17 Unrestricted 376.14 Metagenome 3300004073 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_CordB_D2 DOE Joint Genome Institute (JGI) 3300004073 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.13147 -122.265465 561339040 1748809 623 9 1298 12 SRX7146200 Unrestricted 0.0 Metagenome 3300019741 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BRC_6-7_MG DOE Joint Genome Institute (JGI) 3300019741 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 129062752 323152 251 19 483 20 SRX3983592 Unrestricted 3.62 Metagenome 3300042860 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME31Aug2014-rr0209 DOE Joint Genome Institute (JGI) 3300042860 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1178132631 1765357 389 75 551 95 Unrestricted 14.92 Metagenome 3300014154 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015 DOE Joint Genome Institute (JGI) 3300014154 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 883920693 1924248 565 11 1096 26 SRX3047979 Unrestricted 5.63 Metagenome 3300045574 *Microbiome Draft Lake microbial communities from Canada Lake sediment microbial communities from the Taiga Cordillera ecozone, Canada - Lake 14-584 Genome Quebec 3300045574 Metagenome Analysis MEGAHIT v1.0.6 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Lake Sediment 64.650174 -138.392056 273447921 377510 94 8 118 10 0.0 Metagenome 3300023038 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung D2 DOE Joint Genome Institute (JGI) 3300023038 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Elk feces 38.04 -122.5 82435090 202815 270 24 423 40 SRX4415388 Unrestricted 9.06 Metagenome 3300021508 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4869-18-0-1_MG DOE Joint Genome Institute (JGI) 3300021508 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.0074 -110.591 242313859 494266 238 3 391 12 SRX3982073 Unrestricted 14.14 Metagenome 3300025080 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - 4C3 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025080 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; wswingley@niu.edu Ramunas Stepanauskas; Wesley Swingley No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 41.6655 -87.5437 13-14 104145943 195129 67 0 89 0 SRX3008003 Unrestricted 0.0 Metagenome 3300013174 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100467 University of Pennsylvania 3300013174 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 45458817 86539 23 2 32 6 SRX756531 0.0 Metagenome 3300027816 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom. Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027816 Metagenome Analysis spades v. 3.11.1 Yes Yes rmmckay@bgsu.edu Robert M. McKay No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.69957 -83.2941 982499466 1923044 472 132 649 194 SRX2832451 Unrestricted 0.0 Metagenome 3300049728 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvC-P(2) 1-5 DOE Joint Genome Institute (JGI) 3300049728 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.355 19.0438 661720661 959077 251 23 348 35 Restricted 16.8 Metagenome 3300048125 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_131113.NP1 DOE Joint Genome Institute (JGI) 3300048125 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 897044492 1967710 561 82 870 151 Unrestricted 12.4 Metagenome 3300044607 *Microbiome Permanent Draft Marine microbial communities from various hydrothermal vent chimneys in Pacific Ocean Marine hydrothermal vent microbial communities from Pagoda chimney, Guaymas Basin, Pacific Ocean - A2838 Western Washington University 3300044607 Metagenome Analysis MegaHIT v. 1.2.9 released by Laura A Murray No Yes lmurray0918@gmail.com Laura Murray No Environmental Aquatic Hydrothermal vents Marine Black smokers Marine hydrothermal vent 27.333333 -111.25 324566205 637792 399 8 696 16 0.0 Metagenome 3300044488 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - MERG-8-26-19 DOE Joint Genome Institute (JGI) 3300044488 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.3086 -120.3705 353586953 964969 420 28 838 50 Restricted 7.99 Metagenome 3300029032 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 532_M Beijing Genomics Institute (BGI) 3300029032 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 79925030 121311 83 0 130 0 ERX491183 0.0 Metagenome 3300007358 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159551223 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007358 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 139591620 176872 98 0 119 0 0.0 Metagenome 3300044991 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater bacterial communities from Lake Mendota, Wisconsin, United States - ME_2020-09-11_23.5m_Bacteria_A DOE Joint Genome Institute (JGI) 3300044991 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 1004623146 1487068 430 10 613 17 Unrestricted 13.66 Metagenome 3300017510 *Microbiome Permanent Draft Bras del Port Julio 2014 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CM2 July 2014 University of Valencia 3300017510 Metagenome Analysis idba.1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Alkaline Non-marine Saline and Alkaline Unclassified Non marine hypersaline water 38.1922 -0.5918 44123394 136577 5 0 9 0 0.0 Metagenome 3300056971 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E1L_0_1 DOE Joint Genome Institute (JGI) 3300056971 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.997158 -81.489236 877355591 1506749 461 27 826 39 Unrestricted 12.22 Metagenome 3300035195 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2010_10m DOE Joint Genome Institute (JGI) 3300035195 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 50.0 -145.0 677637279 1550565 305 143 483 205 SRX8187594 Unrestricted 12.49 Metagenome 3300007646 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763840445 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007646 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 196004386 277101 166 0 196 0 0.0 Metagenome 3300025104 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from South Africa to study Microbial Dark Matter (Phase II) - Tshipise hot spring metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025104 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring -22.6092 30.1749 227655718 376503 241 8 311 12 SRX2525297 Unrestricted 0.0 Metagenome 3300069453 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_006-M-20140618-COMP-DNA1 re-annotation Argonne National Laboratory 3300069453 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 7345688 22757 52 5 107 11 ERX2134010 0.0 Metagenome 3300037632 *Microbiome Permanent Draft Soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA Soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA - S2.2017.400 DOE Joint Genome Institute (JGI) 3300037632 Metagenome Analysis metaspades v. 3.13.0 Yes Yes adina@iastate.edu Adina Howe No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.0127 -93.7445 2156385868 3706077 639 10 1109 12 SRX9161660 Unrestricted 14.32 Metagenome 3300026528 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_13_40cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026528 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 618069426 1070598 341 21 583 20 SRX2728781 Unrestricted 0.0 Metagenome 3300071025 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_029-O-20160727-COMP-DNA1 3300071025 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 49163246 143076 67 7 122 9 0.0 Metagenome 3300043722 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - Rondonia_Forest_3_A10m DOE Joint Genome Institute (JGI) 3300043722 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Unclassified Soil -10.142 -62.882 763383735 2191177 588 6 1112 12 Unrestricted 7.79 Metagenome 3300040190 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 022_R1_022417 University of Maryland 3300040190 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.287625 24.79548056 10409105 21934 15 0 31 1 0.0 Metagenome 3300007519 *Microbiome Permanent Draft Freshwater microbial communities from lake liftoff mats and glacier meltwater in Antarctica Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03 DOE Joint Genome Institute (JGI) 3300007519 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes slonczewski@kenyon.edu Joan Slonczewski No Environmental Aquatic Ice Freshwater Glacier meltwater Freshwater -77.714 162.445 2276038725 3704826 547 259 813 372 SRX2753511 Unrestricted 25.64 Metagenome 3300064765 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 592 in High Prairie, Alberta, Canada - S00JY_0747 Microbiome Insights 3300064765 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 55.24151489 -116.2510406 2342985 3209 7 0 23 0 0.0 Metagenome 3300020156 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_5-13C DOE Joint Genome Institute (JGI) 3300020156 Metagenome Analysis spades v. 3.10.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.3049 -116.2547 287312560 512354 396 8 576 14 SRX3936363 Unrestricted 27.41 Metagenome 3300013198 *Microbiome Permanent Draft Human feces microbial communities from adults with Necrotising enterocolitis, Hershey, PA, USA Human feces microbial communities from adults with Necrotising enterocolitis, Hershey, PA, USA - sample 1 University of California, Davis 3300013198 Metagenome Analysis MEGAHIT/Velvet released by JGI data releasing policy No Yes mclimcj13@juniata.edu Christopher McLimans No Host-associated Mammals: Human Large intestine Digestive system Fecal Feces 40.28 -76.65 16672422 58879 48 3 79 2 0.0 Metagenome 3300047642 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BT26-08_D0 (version 2) DOE Joint Genome Institute (JGI) 3300047642 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3555 19.0492 230972475 331252 119 17 164 19 Restricted 0.0 Metagenome 3300011951 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00620 Weill Cornell Medical College 3300011951 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.8 -73.91 41965073 54881 13 0 17 1 SRX822587 0.0 Metagenome 3300049020 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - B10_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049020 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 386608156 882963 548 12 998 20 Unrestricted 0.0 Metagenome 3300002395 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 07SEP2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002395 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 19959777 55919 81 12 144 23 SRX1989908 Unrestricted 0.0 Metagenome 3300031575 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment WE1603-70 DOE Joint Genome Institute (JGI) 3300031575 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh sediment 42.722 -70.847 461171370 816674 358 2 534 8 SRX6453252 Unrestricted 16.77 Metagenome 3300022879 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0906-MG DOE Joint Genome Institute (JGI) 3300022879 Metagenome Analysis spades v. 3.11.1 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 211836763 363265 179 1 213 0 SRX4370194 Unrestricted 34.58 Metagenome 7000000033 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765337473 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000033 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 40242709 72535 0 0 0 0 0.0 Metagenome 3300011743 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00092 Weill Cornell Medical College 3300011743 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.75 -73.98 36754904 54821 28 0 37 0 SRX822086 0.0 Metagenome 3300006487 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159591683 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006487 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 35753258 36924 35 0 65 0 0.0 Metagenome 3300025788 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH01Aug08 (SPAdes) (version 2) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025788 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 152716324 314329 135 37 225 50 SRX2565402 Unrestricted 0.0 Metagenome 3300005975 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius sp. 5 HERON ISLAND DOE Joint Genome Institute (JGI) 3300005975 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 265086884 786019 11 3 22 21 SRX2711973 Unrestricted 0.0 Metagenome 3300045598 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TSR19 DOE Joint Genome Institute (JGI) 3300045598 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.414 68704430 83001 60 6 54 8 SRX12686875 Unrestricted 149.61 Metagenome 3300069258 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, Pacific Southwest, CA, USA - SJER_004-M-20170313-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069258 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.10878 -119.73228 61279592 195486 316 34 586 46 0.0 Metagenome 3300013353 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01469 Weill Cornell Medical College 3300013353 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.59 -73.95 60853437 105229 54 0 55 1 SRX823360 0.0 Metagenome 3300057019 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Wyoming, USA - M_H3_S1 DOE Joint Genome Institute (JGI) 3300057019 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 41.12133 -106.15321 42881294 81224 50 24 87 36 Unrestricted 532.54 Metagenome 3300020707 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 05AUG2008 hypolimnion DOE Joint Genome Institute (JGI) 3300020707 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 87797378 189215 79 5 114 15 Unrestricted 0.0 Metagenome 2075704000 *Microbiome Permanent Draft Bovine rumen microbial communities from Vernon, TX, USA Bovine rumen microbial communities from Vernon, TX, USA, Sample 511 Texas A and M University 2075704000 Metagenome Analysis CLC genomics released per Rekha No Yes wshi@ag.tamu.edu Gray Weibing Shi No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen 34.154 -99.264 615647036 1621434 169 0 338 0 0.0 Metagenome 3300001628 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF021 DOE Joint Genome Institute (JGI) 3300001628 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 1120616 3560 27 6 39 15 SRX2014322 Unrestricted 0.0 Metagenome 3300038528 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Unnamed Lake 10, Antarctica - #424 Australian Centre for Ecogenomics 3300038528 Metagenome Analysis Spades v. 3.13.0 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4767 78.2766 580909774 1201651 312 64 530 99 0.0 Metagenome 3300007952 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 706846339 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007952 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 5025542 7826 5 0 5 4 0.0 Metagenome 3300031396 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #179 DOE Joint Genome Institute (JGI) 3300031396 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 310968946 566968 83 19 130 20 SRX5649473 Unrestricted 40.88 Metagenome 3300002576 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Downstream of discharge Sample CS3-50 454 Life Sciences 3300002576 Metagenome Analysis Genomes released to public per request from Dong Li (May 30 2014) No Yes lidong460@gmail.com Dong Li No Environmental Aquatic River Freshwater Sediment Freshwater sediment 21.345947 40.484555 6-8 0 0 0 0 0 0 0.0 Metagenome 3300027425 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A2-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300027425 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 21681810 73213 107 3 173 4 SRX1991106 Unrestricted 0.0 Metagenome 3300014638 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin17_60_metaG DOE Joint Genome Institute (JGI) 3300014638 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1036404323 1781715 472 2 854 7 SRX3293711 Unrestricted 12.0 Metagenome 3300009497 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503 DOE Joint Genome Institute (JGI) 3300009497 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 891186790 1695243 651 63 1051 129 SRX2999917 Unrestricted 0.0 Metagenome 3300029159 *Microbiome Permanent Draft Infant fecal microbial communities from Pittsburgh, USA Infant fecal microbial communities from Pittsburgh, USA - NECEvent2014_4_6 Banfield Lab, University of California, Berkeley 3300029159 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant fecal 40.4308 -79.9598 25437926 34577 66 0 71 0 0.0 Metagenome 3300049583 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 DOE Joint Genome Institute (JGI) 3300049583 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.407926 -82.180036 938813334 1585125 419 11 761 24 Unrestricted 15.06 Metagenome 3300029793 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 026_10_31_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029793 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 271562172 382952 270 0 380 0 0.0 Metagenome 3300029005 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 332_4M Beijing Genomics Institute (BGI) 3300029005 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 69981320 71260 38 1 54 0 ERX491080 0.0 Metagenome 3300039094 *Microbiome Permanent Draft Sediment and seawater microbial communities from hydrothermal vent in Taiwan, China Seawater microbial communities from hydrothermal vent in Taiwan, China - Y1 Xiamen university 3300039094 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Coastal Marine Unclassified Seawater 24.83499 121.96207 31699152 61970 28 0 34 0 0.0 Metagenome 3300000322 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P12 1000m DOE Joint Genome Institute (JGI) 3300000322 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 48.97 -130.666667 93120578 234472 119 32 202 45 Unrestricted 0.0 Metagenome 3300025389 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH10Sep07 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025389 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 126309743 273224 58 24 106 41 SRX2565420 Unrestricted 0.0 Metagenome 7000000141 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 160421117 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000141 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 5125045 10465 0 0 0 0 SRX023624, SRX023623 0.0 Metagenome 3300037605 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - Pt-7 DOE Joint Genome Institute (JGI) 3300037605 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 134930389 170797 48 5 55 2 SRX9140387 Unrestricted 95.66 Metagenome 3300027694 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB14_bulk (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027694 Metagenome Analysis spades v. 3.11.1 Yes Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 576298223 1194742 449 27 710 48 SRX2838876 Unrestricted 0.0 Metagenome 3300000403 *Microbiome Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine sediment microbial community from La Parguera, Puerto Rico - PR Tt Sediment 2 DOE Joint Genome Institute (JGI) 3300000403 Metagenome Analysis released based on JGI ITS Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Enviromental 17.967317 -67.018833 898328 2770 4 5 3 5 Unrestricted 0.0 Metagenome 3300042453 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Aug2001-rr0464 DOE Joint Genome Institute (JGI) 3300042453 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1596675779 2468159 518 39 648 80 Unrestricted 18.27 Metagenome 3300028587 *Microbiome Permanent Draft Soil microbial communities from agricultural site in Penn Yan, New York, United States Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3 DOE Joint Genome Institute (JGI) 3300028587 Metagenome Analysis spades v. 3.11.1 Yes Yes dbuckley@cornell.edu Dan Buckley No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.673 -77.032 2956259157 8206742 2264 183 4139 321 SRX5246821 Unrestricted 20.18 Metagenome 3300048797 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-P1(2) 40-44 DOE Joint Genome Institute (JGI) 3300048797 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3549 19.0438 586453281 877944 230 2 381 3 Restricted 16.81 Metagenome 3300022135 *Microbiome Permanent Draft Enriched microbial communities from anaerobic bioreactor in Madison, Wisconsin, United States Xylose enriched microbial communities from anaerobic bioreactor in Madison, Wisconsin, United States - 16X DOE Joint Genome Institute (JGI) 3300022135 Metagenome Analysis spades v. 3.11.1-check Yes Yes noguera@engr.wisc.edu Daniel Noguera Yes 35343806 Engineered Bioreactor Unclassified Anaerobic Unclassified Xylose enrichment biomass 43.0737 -89.4147 39142890 51942 56 1 62 1 SRX5337696, SRX5337697 Unrestricted 453.25 Metagenome 3300027880 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Bulk soil microbial communities from a Populus tree surrounding site in Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027880 Metagenome Analysis spades v. 3.11.1 Yes Yes pelletierda@ornl.gov Dale Pelletier No Environmental Terrestrial Tree plantation Soil Unclassified Bulk soil 35.8443 -83.9607 1435914458 3449571 636 27 1212 40 SRX2840430 Unrestricted 0.0 Metagenome 3300043209 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_11 (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043209 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 170627314 294204 68 2 106 3 SRX9140449 Unrestricted 116.79 Metagenome 3300005603 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV61 DOE Joint Genome Institute (JGI) 3300005603 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 684702473 1825354 741 6 1318 10 SRX2782345 Unrestricted 0.0 Metagenome 3300028569 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8m DOE Joint Genome Institute (JGI) 3300028569 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater 39.9879 -1.8737 928577574 1458059 425 67 597 97 SRX5249016 Unrestricted 35.92 Metagenome 3300008223 *Microbiome Permanent Draft Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico and Hudson Canyon, USA Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN8C Hudson Canyon DOE Joint Genome Institute (JGI) 3300008223 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mcredmond@uncc.edu Molly C. Redmond No Environmental Aquatic Cold seeps Marine Unclassified Methane seep mesocosm 39.29 -72.2 401647741 705190 1381 1 2381 1 SRX2754392 Unrestricted 0.0 Metagenome 3300054573 *Microbiome Permanent Draft Co-cultures of unialgal cyanobacteria with co-existing heterotrophic bacteria from Dresden University of Technology, Germany Contaminated culture of unialgal cyanobacteria from Tingha, Australia - Leptolyngbya_49.3 DOE Joint Genome Institute (JGI) 3300054573 Metagenome Analysis MetaFlye v. 2.9-b1768 released based on JGI ITS Yes Yes paul.dagostino@tu-dresden.de Paul M. D'Agostino No Host-associated Microbial Unclassified Bacteria Unclassified Lab culture -29.9622334 151.2550441 8461483 8968 2 0 4 0 Restricted 0.0 Metagenome 3300025016 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-19 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025016 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 487214645 887263 509 9 797 20 SRX3198634 Unrestricted 0.0 Metagenome 3300069572 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_004-M-20131112-COMP-DNA1 re-annotation Argonne National Laboratory 3300069572 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 5621662 18311 36 3 65 9 0.0 Metagenome 3300026783 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 36 (SPAdes) DOE Joint Genome Institute (JGI) 3300026783 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 34072196 85545 43 2 69 0 SRX4340824 Unrestricted 0.0 Metagenome 3300028355 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #186 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028355 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 59137104 93399 38 1 45 1 SRX3296259 Unrestricted 0.0 Metagenome 7000000214 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763759525 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000214 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 74923267 139734 0 0 0 0 0.0 Metagenome 3300047400 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Tapajos River, Santarem, Brazil - ROCA268 DOE Joint Genome Institute (JGI) 3300047400 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater -2.4843 -55.0075 144747834 379061 177 30 374 65 Unrestricted 83.21 Metagenome 3300034139 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 52SNC DOE Joint Genome Institute (JGI) 3300034139 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological biocrust 34.3778 -117.6098 246527862 602662 453 36 840 69 SRX7621475 Unrestricted 8.53 Metagenome 3300037419 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from bulk soil in EcoFAB chamber, Walnut Creek, California, United States - Soil-Nitrogen_B SG_6 DOE Joint Genome Institute (JGI) 3300037419 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9315 -122.0212 2378564478 3884424 779 58 1155 86 Unrestricted 20.18 Metagenome 3300047295 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Rio Grande River, Texas, USA - NASQAN2016_178 DOE Joint Genome Institute (JGI) 3300047295 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 25.8767 -97.4544 231715253 450321 131 62 222 151 Unrestricted 23.78 Metagenome 3300021142 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 29JUL2008 epilimnion DOE Joint Genome Institute (JGI) 3300021142 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 381561863 726457 188 31 280 57 Unrestricted 0.0 Metagenome 3300025367 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE22May08 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025367 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 88218344 198664 84 100 155 125 SRX2565360 Unrestricted 0.0 Metagenome 3300039092 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from unnamed Blob Lake, Antarctica - #12 Australian Centre for Ecogenomics 3300039092 Metagenome Analysis Spades v. 3.12.0 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5464 78.228017 327320564 557473 134 7 211 23 0.0 Metagenome 3300042701 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from Semeiov-Ash lighthouse hydrothermal vent, Atlantic Ocean - BputSym_Se-AL_1_1115A Re-assembly Max Planck Institute for Marine Microbiology 3300042701 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 13.513467 -44.963133 26755673 31013 12 6 12 3 ERX3367188 0.0 Metagenome 3300000324 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 100m DOE Joint Genome Institute (JGI) 3300000324 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 174860176 414335 180 8 370 9 Unrestricted 0.0 Metagenome 3300000751 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 hypolimnion DOE Joint Genome Institute (JGI) 3300000751 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300011583 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00673 Weill Cornell Medical College 3300011583 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.74 -73.99 26977936 37568 20 0 21 0 SRX822640 0.0 Metagenome 3300000063 *Microbiome Permanent Draft Soil microbial communities from expired pesticides burial areas in Poland Soil microbial communities from expired pesticides burial areas in Poland, from Piatkowo sample 4 University of North Carolina, Chapel Hill 3300000063 Metagenome Analysis CLCBio released per JGI data release policy No Yes p.krawczyk@ibb.waw.pl Pawel Krawczyk No Environmental Terrestrial Clay Soil Contaminated Soil 53.1892924 18.9705076 7.8 20699255 28480 9 0 8 0 0.0 Metagenome 3300006155 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t30_693P_control - viral_metagenome University of Texas Southwestern Medical Center 3300006155 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 84479066 175825 57 0 97 0 0.0 Metagenome 3300025548 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 415-3 deep-092012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025548 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 260985971 568753 193 8 328 10 SRX1987677 Unrestricted 0.0 Metagenome 3300021211 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Upa-Upasina ""control"", co14ic 200bp-microeukaryotes" University of New South Wales 3300021211 Metagenome Analysis IDBA-UD released by JGI data releasing policy Yes Yes n.webster@aims.gov.au; e.botte@aims.gov.au Nicole Webster; Emmanuelle BOTTE No Host-associated Porifera Unclassified Unclassified Unclassified C. singaporensis (marine sponge) -9.828217 150.820517 441200 771 0 0 0 0 0.0 Metagenome 3300017659 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG DOE Joint Genome Institute (JGI) 3300017659 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 928019878 2128864 618 17 1108 29 SRX3048047, SRX3048048 Unrestricted 4.71 Metagenome 3300029418 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 094_5_1_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029418 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 196784440 244802 200 0 269 0 0.0 Metagenome 3300013661 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100450 University of Pennsylvania 3300013661 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 6996269 19766 16 0 31 0 SRX756548 0.0 Metagenome 3300029465 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001876-23 Beijing Genomics Institute (BGI) 3300029465 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 135466736 159349 85 0 125 0 0.0 Metagenome 3300045453 *Microbiome Permanent Draft Groundwater microbial communities from wells in Ash Sharqiyah North Governorate, Oman Groundwater microbial communities from well in Ash Sharqiyah North Governorate, Oman - OM20_BA1A_250 DOE Joint Genome Institute (JGI) 3300045453 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rachel.spietz@montana.edu Rachel Spietz No Environmental Aquatic Groundwater Freshwater Unclassified groundwater 22.8812 58.7006 171789009 211695 82 0 89 1 Unrestricted 295.76 Metagenome 3300027692 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027692 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 485857203 1086354 267 70 470 139 SRX3312369 Unrestricted 0.0 Metagenome 3300007650 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 604812005 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007650 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 129959930 165855 90 0 134 0 0.0 Metagenome 3300025135 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Lake sediment microbial communities from Walker lake, Nevada to study Microbial Dark Matter (Phase II) - Walker Lake 11/02/13 Deep Sediment (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025135 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; duane.moser@dri.edu Ramunas Stepanauskas; Duane Moser No Environmental Aquatic Lake Freshwater Unclassified Sediment 38.7 -118.7 648792911 1257243 402 4 614 8 SRX2948776 Unrestricted 0.0 Metagenome 3300069574 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_004-M-20140314-COMP-DNA1 re-annotation Argonne National Laboratory 3300069574 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 12601260 35413 44 7 90 14 0.0 Metagenome 3300026911 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_O1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026911 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 60068605 156343 189 59 344 80 SRX3311913 Unrestricted 0.0 Metagenome 3300050327 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_95 DOE Joint Genome Institute (JGI) 3300050327 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -76.91 160.935 385154406 590947 42 20 55 27 SRX18235948 Restricted 36.53 Metagenome 3300034385 *Microbiome Permanent Draft Ice-wedge Polygon SIP Study Soil microbial communities from ice wedge polygon in Axel Heiberg Island, Nunavut, Canada - Rep_3 Biotechnology Research Institute, National Research Council of Canada 3300034385 Metagenome Analysis Megahit v. 1.1.3 released by JGI data releasing policy No Yes ianina.altshuler@mail.mcgill.ca Ianina Altshuler No Environmental Terrestrial Soil crust Soil Unclassified ice-wedge polygon soil 79.4 -90.7 749549404 1952812 210 4 382 5 0.0 Metagenome 3300033098 *Microbiome Permanent Draft Mercury Periphyton Project Periphyton microbial communities from the St. Maurice River, Quebec, Canada - S3.F1 Genome Quebec 3300033098 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Periphyton Freshwater periphyton 47.899882 -73.808857 285549434 711337 403 100 855 190 0.0 Metagenome 7000000212 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 2, subject 159591683 replicate 2 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000212 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 12002558 22005 0 0 0 0 SRX024629, SRX024630 0.0 Metagenome 3300014883 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT760_16_10D DOE Joint Genome Institute (JGI) 3300014883 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9227 -106.9515 315939498 713755 294 8 591 17 SRX3780503 Unrestricted 4.53 Metagenome 3300024237 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 65D DOE Joint Genome Institute (JGI) 3300024237 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 264504880 601551 199 37 244 56 SRX4472684 Unrestricted 14.45 Metagenome 3300031857 *Microbiome Permanent Draft Freshwater fungal communities from various locations Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 DOE Joint Genome Institute (JGI) 3300031857 Metagenome Analysis spades v. 3.12.0 Yes Yes tyjames@umich.edu Timothy Y. James No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.7464 -83.3444 2051483338 4349830 598 91 915 148 SRX6422216 Unrestricted 22.5 Metagenome 3300017985 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300017985 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1662140692 3595480 1226 95 2013 160 SRX4071913 Unrestricted 14.73 Metagenome 3300000511 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine sediment microbial community from Fremont, CA, USA - Pond A23 Sediment 1 DOE Joint Genome Institute (JGI) 3300000511 Metagenome Analysis Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Enviromental 37.475383 -121.9729 53433178 144539 117 5 255 5 SRX3302446 Unrestricted 0.0 Metagenome 3300047644 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - EG-02_D100 (version 2) DOE Joint Genome Institute (JGI) 3300047644 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3533 19.0466 185575139 312408 162 0 282 0 Restricted 0.0 Metagenome 3300001029 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN350 DOE Joint Genome Institute (JGI) 3300001029 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 279887 914 21 3 43 7 SRX3311801 Unrestricted 0.0 Metagenome 3300017746 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 12 SPOT_SRF_2010-06-29 DOE Joint Genome Institute (JGI) 3300017746 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 371245393 866103 83 82 119 164 SRX5471845, SRX5471847, SRX5471846 Unrestricted 0.0 Metagenome 3300028747 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2 DOE Joint Genome Institute (JGI) 3300028747 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 896437110 2077540 398 79 638 117 SRX5355860 Unrestricted 0.0 Metagenome 3300004030 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_CordA_D2 DOE Joint Genome Institute (JGI) 3300004030 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.015896 -122.501663 1190347051 3554100 957 31 2084 59 SRX7142160 Unrestricted 0.0 Metagenome 3300000837 *Microbiome Draft Forest soil microbial communities from Amazon Forest, Brazil Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100 DOE Joint Genome Institute (JGI) 3300000837 Metagenome Analysis released based on JGI ITS Yes Yes jorge@uta.edu, jmrodrigues@ucdavis.edu Jorge Rodrigues, Jorge L. Rodrigues Yes 30083144 Environmental Terrestrial Tropical forest Soil Bulk soil Forest soil -10.171667 -62.7875 148610418 396511 471 17 758 26 Unrestricted 0.0 Metagenome 3300037158 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 P3 10-14 DOE Joint Genome Institute (JGI) 3300037158 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3535 19.0473 592403595 1256104 241 23 432 43 SRX8144969 Unrestricted 7.74 Metagenome 3300025879 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_85LU_5_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025879 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 785904094 1535214 581 202 816 339 SRX2569218 Unrestricted 0.0 Metagenome 3300029537 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P022V1 Beijing Genomics Institute (BGI) 3300029537 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 148000556 177399 113 0 160 0 0.0 Metagenome 3300049743 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 DOE Joint Genome Institute (JGI) 3300049743 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 29.407926 -82.180036 1580170113 2688207 572 10 1041 19 Unrestricted 14.69 Metagenome 3300014039 *Microbiome Permanent Draft Baboon gut microbial communities from fecal samples in Kenya Baboon gut microbial communities from fecal samples in Kenya - M06 Duke University 3300014039 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Baboon gut 2.717 37.1 215821816 389258 178 2 290 8 SRX834630 0.0 Metagenome 2037747006 *Microbiome Permanent Draft Coalbed water microbial communities from New Mexico, USA Coalbed microbial communities from New Mexico, USA - water sample 454LargeContigs4fna Virginia Polytechnic Institute and State University 2037747006 Metagenome Analysis released per JGI data release policy No Yes biswarup@vt.edu Biswarup Mukhopadhyay No Environmental Aquatic Groundwater Freshwater Unclassified Coalbed water 36.728056 -108.220833 13374454 19006 12 0 22 0 0.0 Metagenome 3300042598 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Furculitermes sp. from Ebogo II, Mbalmayo, Cameroon - Fux382 Eurofins MWG Operon 3300042598 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 3.381958 11.463214 286179714 344133 180 14 253 17 0.0 Metagenome 3300022788 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY13 Version 2 University of New South Wales 3300022788 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 27368891 47482 21 0 38 1 0.0 Metagenome 3300029811 *Microbiome Permanent Draft Washington Margin Metagenomes Marine sediment microbial communities from Washington margin, Washington, USA - Site 4 Core 16 Marine Biological Laboratory 3300029811 Metagenome Analysis Megahit v. 1.1.1-2 released by JGI data releasing policy No Yes michaelgraw@gmail.com Michael Graw No Environmental Aquatic Cold seeps Marine Sediment marine sediment 47.84647 -125.24331 .9 505016753 979136 345 11 561 31 0.0 Metagenome 3300051383 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - HDCcR3C-14 DOE Joint Genome Institute (JGI) 3300051383 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 280472040 445206 204 10 310 15 Unrestricted 50.77 Metagenome 3300039257 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P13_D5 DOE Joint Genome Institute (JGI) 3300039257 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 215446235 333667 74 4 126 4 SRX9635093, SRX9635092 Unrestricted 0.0 Metagenome 3300003800 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH15Jul08 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003800 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 38626700 93909 91 12 126 20 SRX2565425 Unrestricted 0.0 Metagenome 3300037393 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - HF_101317 DOE Joint Genome Institute (JGI) 3300037393 Metagenome Analysis metaspades v. 3.13.0 Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.9002 -89.352 626162677 1699032 619 48 1153 72 SRX9381700 Unrestricted 6.69 Metagenome 3300046458 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere DOE Joint Genome Institute (JGI) 3300046458 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5881 -123.1927 280632559 400994 138 21 231 25 Unrestricted 38.02 Metagenome 3300027245 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1556B-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027245 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2022 -123.941 73956446 177388 166 88 277 130 SRX2753743 Unrestricted 0.0 Metagenome 2010170002 *Microbiome Draft Hot spring microbial communities from Bison Spring, Yellowstone National Park, USA, analyzing thermal gradients 4_050719Q DOE Joint Genome Institute (JGI) 2010170002 Metagenome Analysis lucy / pga No Yes eshock@asu.edu Everett Shock No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6 -110.9 58029430 84577 33 0 57 0 Unrestricted 0.0 Metagenome 3300042077 *Microbiome Permanent Draft Mollusc gills microbial communities from various hydrothermal vent in Atlantic Ocean Mollusc gills microbial communities from Clueless hydrothermal vent, Atlantic Ocean - BspSym_Cl_4_11-5 Max Planck Institute for Marine Microbiology 3300042077 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills -4.803266 -12.3718 528054072 554543 4 8 5 13 ERX3367182 0.0 Metagenome 3300009641 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_11_150 DOE Joint Genome Institute (JGI) 3300009641 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 461880473 800277 282 5 438 8 SRX3003643 Unrestricted 0.0 Metagenome 3300005576 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_16_20cm DOE Joint Genome Institute (JGI) 3300005576 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2548574077 7589483 2742 63 4622 106 SRX2728780 Unrestricted 0.0 Metagenome 3300013809 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - seawater enrichment SCG66 University of British Columbia 3300013809 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 2649779 5482 1 0 3 0 SRX143175 0.0 Metagenome 3300061095 *Microbiome Permanent Draft Lab enriched sediment microbial community from Burr Oak Reservoir, Ohio, USA Lab enriched sediment microbial community from Burr Oak Reservoir, Ohio, USA - BO1 Oregon State University Center for Genome Research and Biocomputing 3300061095 Metagenome Analysis MEGAHIT v. 1.2.9 released by Annette Bollmann No Yes bollmaa@miamioh.edu Annette Bollmann No Environmental, Engineered Aquatic, Lab enrichment Reservoir, Aerobic media Freshwater, Defined media Sediment, Unclassified Sediment 39.5264 -82.0444 14220367 14714 5 0 5 0 0.0 Metagenome 3300026543 *Microbiome Permanent Draft Sea bed manganese nodule microbial communities from the Clarion-Clipperton Zone in the eastern Pacific Sea bed manganese nodule microbial communities from Clarion-Clipperton Zone, Pacific Ocean - CNS370C University of Georgia 3300026543 Metagenome Analysis MEGAHIT meta-large v. 1.1.1 released by JGI data releasing policy No Yes matt.church@flbs.umt.edu Matthew Church No Environmental Aquatic Oceanic Marine Sediment Sea bed manganese nodule 13.794 -116.703 101038432 119325 24 3 27 4 0.0 Metagenome 3300006009 *Microbiome Permanent Draft Rhizosphere and bulk soil microbial communities from Harvard Forest, USA Bulk soil microbial communities from Harvard Forest, USA - 5Bulk_NRpos metaG DOE Joint Genome Institute (JGI) 3300006009 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes deangelis@microbio.umass.edu Kristen M DeAngelis PhD, Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Bulk soil bulk soil 42.5502 -72.1737 3218682 13868 32 7 53 9 Unrestricted 0.0 Metagenome 3300007954 *Microbiome Permanent Draft Microbial communities from Columbia River Estuary, Oregon, USA Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373B_0.2um Oregon State University 3300007954 Metagenome Analysis megahit released per JGI data release policy Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Coastal Marine Unclassified estuary water 46.234 -123.9163 257534730 558777 303 44 531 69 0.0 Metagenome 3300031731 *Microbiome Permanent Draft Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 DOE Joint Genome Institute (JGI) 3300031731 Metagenome Analysis spades v. 3.12.0 Yes Yes agaudin@ucdavis.edu Amelie Gaudin No Host-associated Plants Rhizosphere Roots Soil rhizosphere 38.5 -121.7 4279649113 10978593 2394 168 4166 256 SRX5356659 Unrestricted 8.7 Metagenome 3300031976 *Microbiome Finished The variation of viral communities during algal boom from the coastal of Qingdao, China Marine viral communities from the Yellow sea, Qingdao, China - WS0712 Beijing Novogene Bioinformatics Technology Co., Ltd 3300031976 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes foodyqw_12@163.com Yang Qingwei No Environmental Aquatic Coastal Marine Unclassified marine 36.062 120.38 288477930 475685 114 2 148 2 0.0 Metagenome 7000000379 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 764083206 replicate 2 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000379 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 306914 728 0 0 0 0 SRX024112 0.0 Metagenome 3300027370 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027370 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 221160769 518859 172 27 347 55 SRX3312368 Unrestricted 0.0 Metagenome 3300046737 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 soil DOE Joint Genome Institute (JGI) 3300046737 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.120839 -123.269219 5.94 785126123 1291958 314 22 538 36 Unrestricted 12.49 Metagenome 3300045860 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from the Norris Geyser Basin, Yellowstone National Park, WY, United States - MSUNE_N_07 University of Wisconsin, Madison 3300045860 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.72041 -110.71326 22029978 40358 31 5 35 4 0.0 Metagenome 3300010363 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Lab enriched deep subsurface shale carbon reservoir microbial communities from Ohio, USA - WG8 viral induction DOE Joint Genome Institute (JGI) 3300010363 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 61914107 245768 634 0 1137 1 SRX2526870 Unrestricted 0.0 Metagenome 3300003477 *Microbiome Permanent Draft Estuary microbial community from Gulf of Naples, Italy Estuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 3 Stazione Zoologica Anton Dohrn 3300003477 Metagenome Analysis released per JGI data releasing policy No Yes stefan.thiele@szn.it Stefan Thiele Yes 28063827 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Estuarine 40.7255 14.44767 8 302373051 682770 399 7 768 14 ERX1032433 0.0 Metagenome 3300014152 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin11_60_metaG DOE Joint Genome Institute (JGI) 3300014152 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 768604457 1279498 379 0 613 0 SRX3293658 Unrestricted 22.07 Metagenome 3300045572 *Microbiome Draft Lake microbial communities from Canada Lake sediment microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-649 Genome Quebec 3300045572 Metagenome Analysis MEGAHIT v1.0.6 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Lake Sediment 48.908326 -123.720615 223864971 305664 111 17 169 21 0.0 Metagenome 3300012858 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched pill bug-associated microbial communities from UW Madison campus, WI, USA - HID1972M_E6 MG DOE Joint Genome Institute (JGI) 3300012858 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 127693589 197574 78 1 143 1 SRX3564648 Unrestricted 0.0 Metagenome 3300028276 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_120m DOE Joint Genome Institute (JGI) 3300028276 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 313971799 656966 403 2 663 1 SRX5244773 Unrestricted 14.86 Metagenome 3300001196 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes from Oil-contaminated ecosystem in Alberta, Canada Inniskillen 604.3 McGill University 3300001196 Metagenome Analysis released per user request No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Environmental Terrestrial Sediment Oil reservoir Unclassified Hydrocarbon resource environments 56.04 -118.13 62289397 147854 46 5 138 9 0.0 Metagenome 3300050011 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPN2-1-X2 DOE Joint Genome Institute (JGI) 3300050011 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3628 19.0528 672390785 967785 190 3 288 4 Restricted 15.77 Metagenome 3300041953 *Microbiome Permanent Draft Sea ice microbial communities from Coral Harbour, Canada Sea ice microbial communities from Coral Harbour, Canada - CH5F University of Bristol 3300041953 Metagenome Analysis MEGAHIT v. 1.23 released by JGI data releasing policy Yes Yes christopher.bellas@bristol.ac.uk Chris Bellas No Environmental Aquatic Sea ice Marine Unclassified Sea ice 63.910183 -83.306833 1.2 246774279 327936 191 13 245 21 0.0 Metagenome 3300004457 *Microbiome Permanent Draft Marine viral communities from Newfoundland, Canada Marine viral communities from Newfoundland, Canada MC-1 Yale University 3300004457 Metagenome Analysis CLC Bio released per JGI data release policy No Yes olga.zhaxybayeva@dartmouth.edu Olga Zhaxybayeva No Environmental Aquatic Coastal Marine Unclassified Marine 47.65117 -52.695961 204170886 546140 12 0 14 3 0.0 Metagenome 3300011728 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01098 Weill Cornell Medical College 3300011728 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.63 -73.94 33133191 51875 16 0 23 0 SRX823053 0.0 Metagenome 3300047387 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_141210.NP1 DOE Joint Genome Institute (JGI) 3300047387 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 941247520 1942495 575 49 924 90 Unrestricted 12.74 Metagenome 3300013172 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100660 University of Pennsylvania 3300013172 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 31425493 74352 28 0 39 1 SRX756434 0.0 Metagenome 3300001643 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF044 DOE Joint Genome Institute (JGI) 3300001643 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 5565701 17644 33 3 66 5 SRX2014391 Unrestricted 0.0 Metagenome 3300065583 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 781 in Three Hills, Alberta, Canada - S00JY_0799 Microbiome Insights 3300065583 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.46151696 -113.1723542 113619557 157809 51 3 79 6 0.0 Metagenome 3300055076 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_70-s34 day 154 DOE Joint Genome Institute (JGI) 3300055076 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1479824051 2150864 263 141 317 175 Unrestricted 46.65 Metagenome 3300024513 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_8h DOE Joint Genome Institute (JGI) 3300024513 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 169656475 392004 174 13 284 26 SRX4547320 Unrestricted 13.06 Metagenome 3300029034 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 268_12M Beijing Genomics Institute (BGI) 3300029034 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 107932033 129383 70 0 126 0 ERX491045 0.0 Metagenome 3300047555 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Como Creek, Nederland, Colorado, USA - comocreek_2019_sw_WHONDRS-S19S_0026 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047555 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 40.0349 -105.5439 77137938 123657 153 52 285 65 Unrestricted 0.0 Metagenome 3300047369 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_150429.NP2 DOE Joint Genome Institute (JGI) 3300047369 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 799808840 1644702 472 191 705 303 Unrestricted 13.81 Metagenome 3300014281 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 245_D2_2014-8-29 San Diego State University 3300014281 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 7533673 21195 17 11 45 32 0.0 Metagenome 3300013626 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00841 Weill Cornell Medical College 3300013626 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.97 13490487 13910 6 0 10 0 SRX822807 0.0 Metagenome 3300032195 *Microbiome Permanent Draft Microbial communities from various environments in Magnetic Island Reef, Townsville, Australia Sediment microbial communities from Magnetic Island Reef, Townsville, Australia - 36338 AGRF 3300032195 Metagenome Analysis SpAdes v. 3.13.0 released by JGI data releasing policy Yes Yes b.glasl@aims.gov.au Bettina Glasl No Environmental Aquatic Coastal Marine Sediment Sediment -19.1531 146.86 506391605 1224670 103 13 268 23 0.0 Metagenome 3300043724 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - II_P72_A001 DOE Joint Genome Institute (JGI) 3300043724 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.1703 -62.8326 592765253 1541135 400 4 726 9 Unrestricted 7.18 Metagenome 3300043351 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 173-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043351 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9372 -107.012 594790873 1618893 573 22 1079 48 Unrestricted 6.83 Metagenome 3300025102 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025102 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -12.999 -80.801 296021308 653145 4 0 10 0 SRX2926262 Unrestricted 0.0 Metagenome 3300037634 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037634 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -15.59 -75.37 476935903 1079001 23 0 25 0 SRX3197407, SRX3197408 Unrestricted 0.0 Metagenome 3300038543 *Microbiome Permanent Draft Freshwater viral communities from Besos river, Catalonia, Barcelona, Spain Freshwater viral communities from Besos river, Catalonia, Barcelona, Spain - BRW2 University of Barcelona 3300038543 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 41.42 2.13 5985994 14413 15 0 43 1 0.0 Metagenome 3300070613 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountains, Colorado, USA - RMNP_019-O-20170807-COMP-DNA1 3300070613 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 759528 2590 13 1 22 2 0.0 Metagenome 3300012451 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100325 University of Pennsylvania 3300012451 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 17092462 23044 14 0 24 0 SRX756332 0.0 Metagenome 3300045258 *Microbiome Permanent Draft Forest soil microbial communities from boreal-temperate forests in Minnesota, USA Forest soil microbial communities from Hubachek Wilderness Research Center, Ely, Minnesota, USA - Ely AMB DO L7 DOE Joint Genome Institute (JGI) 3300045258 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pankaj.trivedi@colostate.edu Pankaj Trivedi No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 47.55 -92.3 375594357 643932 204 9 379 13 Unrestricted 16.81 Metagenome 3300002269 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 01JUN2011 deep hole epilimnion ns DOE Joint Genome Institute (JGI) 3300002269 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 20712029 50024 55 9 78 23 SRX1989279 Unrestricted 0.0 Metagenome 3300012260 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00681 Weill Cornell Medical College 3300012260 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.78 -73.97 41870299 68515 13 0 27 0 SRX822648 0.0 Metagenome 3300029213 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011689-89 Beijing Genomics Institute (BGI) 3300029213 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 136773243 185558 96 1 157 2 0.0 Metagenome 3300001320 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A28-65cm)- 6 month illumina University of Tennessee 3300001320 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 12063965 49512 110 0 216 0 0.0 Metagenome 3300050563 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D5_SEK1_4_to_SEK1 DOE Joint Genome Institute (JGI) 3300050563 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.244 353434117 590735 237 57 330 93 Unrestricted 26.98 Metagenome 7000000070 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000070 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 584610 1729 0 0 0 0 0.0 Metagenome 3300027079 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepB_8h DOE Joint Genome Institute (JGI) 3300027079 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 185322465 377980 169 4 255 3 SRX5245412 Unrestricted 16.12 Metagenome 3300028082 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T0 DOE Joint Genome Institute (JGI) 3300028082 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 152768383 247759 97 18 116 19 SRX8128118, SRX8128117 Unrestricted 0.0 Metagenome 3300034054 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A3A4.1 DOE Joint Genome Institute (JGI) 3300034054 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 247915688 705640 411 4 672 9 SRX7658845 Unrestricted 6.59 Metagenome 3300024061 *Microbiome Finished Water metavirome from crystallizer in the solar salterns in Santa Pola Enriched hypersaline water viral community from crystallizer pond CR30 in salterns,Santa Pola, Alicante, Spain - clone 2F61 Genome Express 3300024061 Metagenome Analysis Velvet v. 3.3 released by JGI data releasing policy No Yes emnabouhajja@gmail.com Emna Bouhajja No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline water 38.1922 -0.5918 1961 3 0 0 0 0 0.0 Metagenome 3300030122 *Microbiome Permanent Draft Human feces microbial communities from Tubingen, Germany Human feces microbial communities from Tubingen, Germany - C1 University of Tuebingen 3300030122 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 48.52 9.05 48262460 59092 67 0 86 0 0.0 Metagenome 3300020140 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300020140 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 390840749 897757 332 34 606 55 SRX4365322, SRX4365321, SRX4365320 Unrestricted 25.97 Metagenome 3300048864 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD19 DOE Joint Genome Institute (JGI) 3300048864 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.347657 -119.2808 41718521 44993 10 6 5 6 Unrestricted 1134.86 Metagenome 2004247000 *Microbiome Permanent Draft Hypersaline mat microbial communities from Guerrero Negro, Baja California Sur, Mexico Hypersaline mat microbial communities from Guerrero Negro, Mexico - 0-1 mm depth into microbial mat DOE Joint Genome Institute (JGI) 2004247000 Metagenome Analysis No Yes nrpace@colorado.edu Pace, Norman Yes 18523433 Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Microbial mats Hypersaline mat 27.68908 -113.917 6-9 8596350 13353 10 0 13 0 0.0 Metagenome 3300002287 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP19-I3 3300002287 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300033074 *Microbiome Finished Gwangju Wastewater Treatment Plant Virome, South Korea Raw sewage viral community from Jangsung wastewater treatment plant, Jangsung, South Korea - JWWTP-input v.1 Macrogen 3300033074 Metagenome Analysis SPAdes v. 3.10.1 released by JGI data releasing policy No Yes chojc@inha.ac.kr Jang-Cheon Cho No Engineered WWTP Unclassified Wastewater Unclassified Wastewater 35.279013 126.762049 60172263 90045 0 0 0 0 0.0 Metagenome 3300024941 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 64_LOW9 (SPAdes) DOE Joint Genome Institute (JGI) 3300024941 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 68928025 104938 22 0 32 0 SRX2720764 Unrestricted 0.0 Metagenome 3300069598 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Soaproot Saddle, Pacific Southwest, CA, USA - SOAP_005-M-20180529-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069598 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.03337 -119.26219 31953540 95994 98 8 167 5 0.0 Metagenome 3300010298 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 1 OAHU.JWI-14 metaG DOE Joint Genome Institute (JGI) 3300010298 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms 21.2608 -157.7866 862677484 1284501 18 38 38 44 SRX2525535 Unrestricted 0.0 Metagenome 7000000456 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit number 3 of subject 159753524 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000456 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 2116244 2215 0 0 0 0 0.0 Metagenome 3300005465 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0025m University of Hawaii 3300005465 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 48610719 72921 67 1 87 2 0.0 Metagenome 3300007834 *Microbiome Permanent Draft Clones from fosmidial library constructed using mangrove sediment Mangrove sediment microbial communities from Bertioga, Sao Paulo, Brazil - Clones from fosmid library, F7_contig4 Molecular Research LP (MR DNA) 3300007834 Metagenome Analysis IDBA released per JGI data release policy No Yes luc.g.cabral@gmail.com Luc?lia Cabral, Lucelia Cabral No Environmental Aquatic Unclassified Sediment Unclassified sediment -23.8553 -46.1394 7395 6 0 0 0 0 0.0 Metagenome 3300059740 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1555B-3 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059740 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2024 -123.9409 118264986 261112 189 29 345 44 SRX2753734 Unrestricted 0.0 Metagenome 3300011270 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG DOE Joint Genome Institute (JGI) 3300011270 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Saprolite Vadose zone soil 39.7291 -123.6419 2432784074 4807984 1208 5 2049 21 SRX2526893 Unrestricted 0.0 Metagenome 3300059362 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.20W.8 SIP fraction DOE Joint Genome Institute (JGI) 3300059362 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 123994860 236242 96 6 148 10 Unrestricted 10.22 Metagenome 3300023256 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1506 DOE Joint Genome Institute (JGI) 3300023256 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 179844837 450520 118 0 191 1 SRX4397540 Unrestricted 9.06 Metagenome 3300040647 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Moab, Southern Rockies & Colorado Plateau, UT, USA - MOAB_006-M-20170521-COMP-DNA1 Battelle Memorial Institute 3300040647 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.24833 -109.38827 2129243 6656 26 0 50 1 0.0 Metagenome 3300009135 *Microbiome Permanent Draft Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 382 cmbsf Oregon State University 3300009135 Metagenome Analysis MetaSPAdes released per JGI data release policy No Yes rcolwell@coas.oregonstate.edu Frederick Colwell No Environmental Aquatic Cold seeps Marine Sediment Marine sediment 39.54345 -72.3998 .382 1736807415 5754676 949 10 1901 26 0.0 Metagenome 3300008738 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 2.7-0.2um, replicate b Georgia Genomics Facility 3300008738 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 588602539 750268 317 3 405 10 0.0 Metagenome 3300026717 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A2-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026717 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 17658403 58346 108 3 183 5 SRX1991204 Unrestricted 0.0 Metagenome 3300011345 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100403 University of Pennsylvania 3300011345 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9646061 16841 10 1 6 0 SRX756254 0.0 Metagenome 3300028199 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Site 228 with 3.0 UM filter - spades J. Craig Venter Institute 3300028199 Metagenome Analysis Spades v. 3.11.1 Released per Simon Roux. Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater -68.4 78.18278 7.29 12486049 26436 13 0 26 1 0.0 Metagenome 3300002793 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-E DOE Joint Genome Institute (JGI) 3300002793 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.56 -89.32 87743 274 10 1 13 5 SRX1991334 Unrestricted 0.0 Metagenome 3300001279 *Microbiome Permanent Draft Microbial community impact on carbon sequestration in managed wetland Carbon farming Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk v1 (version 4) DOE Joint Genome Institute (JGI) 3300001279 Metagenome Analysis Metagenome Standard Draft released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Sediment Wetland 38.1072 -121.6485 217817654 615872 621 16 1132 23 SRX2514378, SRX2514377, SRX2514379, SRX2514380 Unrestricted 0.0 Metagenome 3300035050 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B4.6_Sample4.Rodeo6.Well667 DOE Joint Genome Institute (JGI) 3300035050 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 169884070 265846 170 0 242 0 SRX8353882 Unrestricted 58.06 Metagenome 3300002005 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot9-3 3300002005 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 3959603 23242 77 1 153 5 0.0 Metagenome 3300031843 *Microbiome Permanent Draft Microbial communities from the deep biosphere Brine seep microbial communities from Boulby Mine, Loftus, North Yorkshire, England, UK - Sample_4 re-assembly The Marine Biological Laboratory 3300031843 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Unclassified Deep subsurface Unclassified Brine 54.5561 -0.8216 146054390 402635 78 3 151 2 SRX2516630 0.0 Metagenome 3300040055 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 084_R1_022417 University of Maryland 3300040055 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.63730556 27.19722222 13333204 26491 23 0 44 0 0.0 Metagenome 3300009548 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_6_100 DOE Joint Genome Institute (JGI) 3300009548 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 369090934 609919 193 0 307 1 SRX3002041 Unrestricted 0.0 Metagenome 3300024276 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepA_8d DOE Joint Genome Institute (JGI) 3300024276 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 126367657 275805 137 5 212 3 SRX4547485 Unrestricted 16.04 Metagenome 3300046163 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_PBmetag_111019.NPB DOE Joint Genome Institute (JGI) 3300046163 Metagenome Analysis metaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 302420537 331670 172 7 166 9 Unrestricted 0.0 Metagenome 3300032201 *Microbiome Permanent Draft STAs constructed wetland biome Wetland sediment microbial communities from Everglades, Florida, USA - STA10-Sample01_1 University of Florida 3300032201 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy No Yes ng.hanh24@gmail.com Hanh Nguyen No Environmental Aquatic Wetlands Freshwater Sediment sediment 26.38 -80.51 6.6-8.4 19444416 28857 16 2 34 1 0.0 Metagenome 3300014262 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D1 DOE Joint Genome Institute (JGI) 3300014262 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.04565 -121.866287 293726838 714403 223 0 493 0 SRX8048277 Unrestricted 0.0 Metagenome 3300042227 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D194_1 DOE Joint Genome Institute (JGI) 3300042227 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 146498054 194767 98 10 143 16 Unrestricted 70.15 Metagenome 3300013755 *Microbiome Permanent Draft Crude oil microbial communities from oil reservoirs in China Crude oil microbial communities from oil reservoirs in Daqing, China - Crude oil from DQ Peking University 3300013755 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Terrestrial Unclassified Oil reservoir Unclassified Crude oil 45.5 124.15 186329732 424628 153 2 251 4 0.0 Metagenome 3300027702 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic Ocean affecting the dissolved organic carbon pool Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - DCM_A/KNORR_S2/LV (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027702 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -37.9951 -44.9972 507620258 1190312 428 40 775 60 SRX2566747 Unrestricted 0.0 Metagenome 3300070760 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_042-M-20170629-COMP-DNA1 3300070760 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 626887 2108 7 0 27 0 0.0 Metagenome 3300070342 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_003-O-20200716-COMP-DNA1 3300070342 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 81662947 212277 77 29 159 50 0.0 Metagenome 3300028513 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 13 Selected contigs with viral hallmark genes 2 Autonomous University of Barcelona 3300028513 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 1323485 1985 0 0 0 0 0.0 Metagenome 3300000618 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 28JUN2007 epilimnion v3 (version 3) DOE Joint Genome Institute (JGI) 3300000618 Metagenome Analysis released based on JGI ITS No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300060281 *Microbiome Permanent Draft Sediment microbial communities from the PNNL SFA Hanford 300 Area, Columbia River, WA, USA Sediment microbial communities from in situ POM Reactor at the PNNL SFA Hanford 300 Area, Columbia River, WA, USA - Deep Ashed with POM DOE Joint Genome Institute (JGI) 3300060281 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes eroden@geology.wisc.edu Eric Roden No Environmental Aquatic River Freshwater Sediment Sediment 46.467778 -119.464444 1327682910 2027117 445 54 542 91 Unrestricted 33.16 Metagenome 3300012332 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100431 University of Pennsylvania 3300012332 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 18004680 44572 22 0 28 0 SRX756567 0.0 Metagenome 3300042907 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Nov2014-rr0227 DOE Joint Genome Institute (JGI) 3300042907 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 882168020 1334125 306 112 411 153 Unrestricted 23.89 Metagenome 3300037463 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Biocrust microbial communities from Canyonlands National Park, Utah, United States - Terrestrial sediment A DOE Joint Genome Institute (JGI) 3300037463 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Biocrust Soil Unclassified biocrust 38.715 -109.6908 1314023787 2051060 586 11 939 14 Unrestricted 17.8 Metagenome 3300017524 *Microbiome Permanent Draft Bras del Port Dic 2016 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CM1 Febrary 2014 University of Valencia 3300017524 Metagenome Analysis idba.1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Mar?a Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Non marine hypersaline water 38.1922 -0.5918 68404267 237214 2 0 8 0 0.0 Metagenome 3300000665 *Microbiome Permanent Draft Abyssal marine microbial communities from the Mediterranean Sea Abyssal marine microbial communities from the Mediterranean Sea - thetis interface Fidelity Systems Inc 3300000665 Metagenome Analysis released per JGI data release policy No Yes francesco.smedile@iamc.cnr.it, francesco.smedile14@gmail.com francesco smedile, Francesco Smedile No Environmental Aquatic Oceanic Marine Abyssal plane Abyssal marine 34.6698 22.1455 0 0 0 0 0 0 0.0 Metagenome 3300014775 *Microbiome Permanent Draft Seawater microbial communities from Singapore Strait, Singapore Seawater microbial communities from Singapore Strait, Singapore - Site A Nov Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300014775 Metagenome Analysis CLC workbench released by JGI data releasing policy No Yes erinscm@nus.edu.sg Charmaine Ng No Environmental Aquatic Unclassified Marine Unclassified Seawater 1.205291 103.634563 118948411 174795 20 0 18 2 0.0 Metagenome 3300006979 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 159227541 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006979 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 16881811 26281 23 0 35 0 0.0 Metagenome 3300045447 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-647 Genome Quebec 3300045447 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.80178 -123.703764 742177273 1562298 254 63 405 97 0.0 Metagenome 3300015334 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_20JUN2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015334 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 214977095 363430 9 100 14 147 SRX3923070 Unrestricted 7.42 Metagenome 3300003542 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS900_Dependable_DNA 3300003542 Metagenome Analysis CLC genomics workbench 7.0 released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.87992 -129.80294 726296071 1704614 296 23 921 46 0.0 Metagenome 3300049517 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G24_B_5_control DOE Joint Genome Institute (JGI) 3300049517 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 98526503 222335 220 12 471 28 Unrestricted 14.95 Metagenome 3300029395 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 082_4_30_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029395 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 117823591 136572 138 0 148 0 0.0 Metagenome 3300044217 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T16 S DOE Joint Genome Institute (JGI) 3300044217 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.676 -64.1509 319150403 760331 25 6 41 3 Unrestricted 50.75 Metagenome 3300039304 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Pleurocapsa minor GSE-CHR-MK-17-07R and co-occurring heterotrophs from sandstone from Lower Calf Creek Falls, Grand Staircase Escalante National Monument, UT, United States - 20190625_44 DOE Joint Genome Institute (JGI) 3300039304 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Sandstone 37.8291 -111.42 79182249 96195 38 0 34 0 SRX9640316 Unrestricted 161.54 Metagenome 3300009879 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY1 University of New South Wales 3300009879 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au; z5119396@unsw.edu.au Holly Bennett; Hung Nguyen No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 9853744 18745 11 0 22 0 0.0 Metagenome 3300005537 *Microbiome Permanent Draft Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 DOE Joint Genome Institute (JGI) 3300005537 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shadeash@msu.edu, shade.ashley@gmail.com Ashley Shade Yes 30397342 Environmental Terrestrial Unclassified Soil Unclassified Surface soil 40.7999 -76.3402 2437071457 6432437 1432 117 2440 202 SRX2837960 Unrestricted 0.0 Metagenome 3300043432 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Cobb Mill Creek, Oyster, Virginia, USA - cobbmillcreek_2019_sw_WHONDRS-S19S_0090 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043432 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 37.2913 -75.9308 241119724 429957 322 41 592 73 Unrestricted 19.44 Metagenome 3300055450 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.17W.9 SIP fraction DOE Joint Genome Institute (JGI) 3300055450 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 221493213 408195 110 11 201 13 Unrestricted 15.71 Metagenome 3300061693 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TS10 (version 2) DOE Joint Genome Institute (JGI) 3300061693 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.4139 103920361 104009 132 2 134 2 SRX12729173, SRX12729174 Restricted 0.0 Metagenome 3300042036 *Microbiome Permanent Draft Mollusc gills microbial communities from various hydrothermal vent in Atlantic Ocean Mollusc gills microbial communities from Lucky Strike-Eifeltower hydrothermal vent, Atlantic Ocean - BazoSym_LS-ET_4_1048I Max Planck Institute for Marine Microbiology 3300042036 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 37.28292 -32.27561 6841749 8684 2 1 2 1 ERX3367190 0.0 Metagenome 3300031937 *Microbiome Permanent Draft Microbial communities from the deep biosphere Hydrothermal vent fluid microbial communities from New Bay of Prony, New Caledonia - Prony27 re-assembly Marine Biological Laboratory 3300031937 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid -22.3609167 166.8799667 27625501 72451 62 2 85 3 0.0 Metagenome 3300046776 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Platte River, Nebraska, USA - NASQAN2011_429 DOE Joint Genome Institute (JGI) 3300046776 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 41.0152 -96.1577 46252320 114586 121 51 224 88 Unrestricted 0.0 Metagenome 3300001312 *Microbiome Permanent Draft Marine microbial communities from the Red Sea Marine microbial communities from the Red Sea - Pelagibacter Contigs in ATIILCL assembly 3300001312 Metagenome Analysis released by JGI data releasing policy No Yes bioosama@aucegypt.edu Osama Ali No Environmental Aquatic Unclassified Marine Unclassified Marine 21.351508 38.078207 2789543 2887 0 0 0 0 0.0 Metagenome 3300039243 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P7_D2 DOE Joint Genome Institute (JGI) 3300039243 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 223370104 369663 111 15 180 18 SRX9635083, SRX9635084 Unrestricted 0.0 Metagenome 3300016674 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water catchment in Singapore - WC_Site 4a, Aug Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016674 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Unclassified Freshwater Unclassified surface waters 1.35 103.87 90105065 121912 32 8 26 7 0.0 Metagenome 3300005811 *Microbiome Permanent Draft Viruses and Other Potential Genetic Elements in Microbial Populations Multiple viral genoms assembled from dsRNA - CG_2_15_M5_dsRNA_cDNA The New York Genome Center 3300005811 Metagenome Analysis Trinity v2.0.6 followed by CAP3 released per JGI data release policy No Yes carolyn.decker@colorado.edu Carolyn Decker No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified cold water geyser system 38.938584 -110.1354127 808310 974 0 0 0 0 0.0 Metagenome 3300019870 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - L1m1 DOE Joint Genome Institute (JGI) 3300019870 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.8925 -106.9111 65201349 160932 160 14 340 19 SRX3958728, SRX3958727 Unrestricted 0.0 Metagenome 3300020441 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine prokaryotic communities collected during Tara Oceans survey from station TARA_078 - TARA_B100000524 (ERX556088-ERR599006) CEA Genoscope 3300020441 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -30.1885 -43.2831 1144691683 3336556 414 98 825 220 0.0 Metagenome 3300026557 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal DOE Joint Genome Institute (JGI) 3300026557 Metagenome Analysis SPAdes v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 2200122274 5131437 576 52 1173 104 SRX4365317, SRX4365316, SRX4365315 Unrestricted 1.88 Metagenome 3300008339 *Microbiome Permanent Draft Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Sept 29, 2014 all contigs University of Michigan 3300008339 Metagenome Analysis IDBA-UD released per JGI data release policy No Yes duhaimem@umich.edu Melissa Duhaime No Environmental Aquatic Lake Freshwater Unclassified freshwater lake 41.7032 -83.2575 8.738 475416649 992112 1 0 1 0 0.0 Metagenome 3300020579 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M DOE Joint Genome Institute (JGI) 3300020579 Metagenome Analysis spades v. 3.10.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 2629924972 5613387 694 40 1197 66 SRX4029384 Unrestricted 14.64 Metagenome 3300055534 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.17W.13 SIP fraction DOE Joint Genome Institute (JGI) 3300055534 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 105731281 205464 94 59 142 79 Unrestricted 9.91 Metagenome 3300049438 *Microbiome Permanent Draft Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama - S001_CH1_control DOE Joint Genome Institute (JGI) 3300049438 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes njbouskill@lbl.gov Nicholas Bouskill No Environmental Terrestrial Tropical forest Soil Bulk soil Soil 9.17936 -79.8296 383829933 976586 266 8 426 9 Unrestricted 8.46 Metagenome 3300028061 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_05JUN2017_LD1 DOE Joint Genome Institute (JGI) 3300028061 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 111226140 203937 7 42 5 49 SRX5345795 Unrestricted 18.31 Metagenome 3300029576 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35512 Beijing Genomics Institute (BGI) 3300029576 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 186663653 251736 166 1 221 1 0.0 Metagenome 3300004248 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 123_LOW14 DOE Joint Genome Institute (JGI) 3300004248 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 36469112 82693 41 0 59 0 SRX2721594 Unrestricted 0.0 Metagenome 3300003784 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 DOE Joint Genome Institute (JGI) 3300003784 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 161903183 294857 164 0 198 0 SRX2770676 Unrestricted 0.0 Metagenome 3300025641 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025641 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 412496350 758621 263 52 376 96 SRX2999668 Unrestricted 0.0 Metagenome 3300022497 *Microbiome Permanent Draft Acid mine drainage microbial communities from Malanjkhand copper mine, India Acid mine drainage microbial communities from Malanjkhand copper mine, India - M16_II Kmer_63 Indian Institute of Technology, kharagpur 3300022497 Metagenome Analysis Metavelvet v. 1.2.02 released by JGI data releasing policy No Yes sarpinaki@yahoo.com Pinaki Sar No Environmental Terrestrial Unclassified Soil Mine drainage sediment 22.022183 80.727633 232657905 946633 462 0 804 2 0.0 Metagenome 3300045168 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_7_A DOE Joint Genome Institute (JGI) 3300045168 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 215442044 244189 118 1 149 1 Unrestricted 91.25 Metagenome 3300002159 *Microbiome Permanent Draft Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran, Adriatic Sea Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge pinacoderm, lysed by freeze-thaw cycling DOE Joint Genome Institute (JGI) 3300002159 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes ute.hentschel@uni-wuerzburg.de Ute Hentschel Humeida No Host-associated Porifera Unclassified Sponge Unclassified Host-associated 45.5099 13.56 245555515 479126 156 6 221 5 SRX4919621 Unrestricted 0.0 Metagenome 3300006413 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0025m University of Hawaii 3300006413 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 339718852 762605 351 35 517 45 0.0 Metagenome 3300045115 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_90m_2015 DOE Joint Genome Institute (JGI) 3300045115 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 868252105 1503255 574 24 855 35 Unrestricted 16.56 Metagenome 3300061146 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IF4SW PMA-treated Jet Propulsion Laboratory, California Institute of Technology 3300061146 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 67922586 115973 10 10 14 17 SRX2249364, SRX3808531, SRX2249365, SRX3808527 0.0 Metagenome 3300013568 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100448 University of Pennsylvania 3300013568 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 1394864 4331 9 0 17 0 SRX756550 0.0 Metagenome 3300000876 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and P1 (4) DOE Joint Genome Institute (JGI) 3300000876 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 43429292 72119 39 0 71 0 SRX3311645 Unrestricted 0.0 Metagenome 3300012150 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ029 MetaG DOE Joint Genome Institute (JGI) 3300012150 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.7126 -74.5635 176493628 365989 170 7 254 22 SRX3539463 Unrestricted 0.0 Metagenome 3300049757 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_B_2_control DOE Joint Genome Institute (JGI) 3300049757 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 135072809 285061 245 15 491 24 Unrestricted 12.16 Metagenome 3300030110 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_068 - TARA_R100000988 CEA Genoscope 3300030110 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -31.0266 4.665 278324856 522540 36 0 66 0 0.0 Metagenome 3300035565 *Microbiome Permanent Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-06-3_at_2-3_cm Genome Quebec 3300035565 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89673 -73.73461 696620433 1718494 716 28 1516 71 0.0 Metagenome 3300069227 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Great Basin, Onaqui, Utah, USA - ONAQ_008-M-20210524-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069227 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Shrubland Soil Unclassified Terrestrial soil 40.15854 -112.521574 1900961871 4951528 1879 69 3778 126 0.0 Metagenome 3300001965 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Coastal Floreana, Equador - GS028 J. Craig Venter Institute (JCVI) 3300001965 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine -1.2169445 -90.319725 135719211 247934 159 4 186 2 0.0 Metagenome 3300035359 *Microbiome Permanent Draft Cathode biofilm microbial communities from solar microbial fuel cell (MFC) in Washington, DC, USA Cathode biofilm microbial communities from solar microbial fuel cell (MFC) in Washington, DC, USA - Sample 6 Naval Research Laboratory 3300035359 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Industrial production Unclassified Engineered product Unclassified Cathode biofilm 38.823126 -77.017947 52019279 60261 16 0 24 0 0.0 Metagenome 3300003108 *Microbiome Permanent Draft Groundwater microbial communities from Illinois-Basin Decatur Project Groundwater microbial communities from Illinois-Basin Decatur Project, Sample - 1.8km deep Mt. Simon Sandstone pore University of Illinois, Urbana-Champaign 3300003108 Metagenome Analysis Newbler v. 2.3 Made public because these are downloaded from Genbank No Yes fouke@illinois.edu Fouke BW. Yes 24238218 Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 39.850998 -88.939028 11543781 15026 9 0 21 0 0.0 Metagenome 3300027735 *Microbiome Permanent Draft Wetland sediment microbial communities from St. Louis River estuary, Michigan under dissolved organic matter induced mercury methylation Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare1Fresh (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027735 Metagenome Analysis spades v. 3.11.1 Yes Yes diana.nemergut@duke.edu.deleted Diana Nemergut No Environmental Aquatic Wetlands Freshwater Sediment Wetland sediment 46.6972164 -92.3279105 509827138 1339109 727 26 1320 51 SRX2775255 Unrestricted 0.0 Metagenome 3300001657 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN405 DOE Joint Genome Institute (JGI) 3300001657 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Soil 44.20517707 -122.1284473 1966 7 2 0 0 0 SRX1986911 Unrestricted 0.0 Metagenome 3300038557 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Mojavia pulchra JT2-VF2 and co-occurring heterotrophs from desert soil from Cadiz Valley, Joshua Tree National Park, CA, United States - 20190625_29 DOE Joint Genome Institute (JGI) 3300038557 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Desert Soil Unclassified Desert soil 34.1098 -115.4803 96919296 103348 37 0 38 0 SRX9404616 Unrestricted 163.78 Metagenome 3300001918 *Microbiome Permanent Draft Stromatolite microbial communities from Laguna Bacalar, Quintana Roo, Mexico Stromatolite microbial communities from Laguna Bacalar, Quintana Roo, Mexico - Sample 1 Rapids 3300001918 Metagenome Analysis IDBA_UD k52-k92 step8 released by JGI data releasing policy No Yes Gregory Dick, Sunit Jain No Environmental Aquatic Microbialites Freshwater Unclassified Stromatolite 18.767324 -88.306921 107897051 128891 97 2 137 0 0.0 Metagenome 3300012305 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100412 University of Pennsylvania 3300012305 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8959388 21946 20 1 21 0 SRX756586 0.0 Metagenome 3300031241 *Microbiome Permanent Draft Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG DOE Joint Genome Institute (JGI) 3300031241 Metagenome Analysis spades v. 3.12.0 Yes Yes rbneum@uw.edu Rebecca Neumann No Host-associated Plants Rhizosphere Roots Soil rhizosphere 47.6516 -122.3045 1144653845 2545471 692 19 1127 25 SRX5345973 Unrestricted 9.23 Metagenome 3300035518 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver stomach microbial communities from Maple Ridge, British Columbia, Canada - Beaver6Stomach1 DOE Joint Genome Institute (JGI) 3300035518 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Stomach Digestive system Unclassified stomach 49.18 -122.54 1992324914 2836429 39 41 85 82 SRX8346454 Unrestricted 7.22 Metagenome 3300013682 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00855 Weill Cornell Medical College 3300013682 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -73.99 17004976 23848 10 0 18 0 SRX822821 0.0 Metagenome 3300001045 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MMD0.2 DOE Joint Genome Institute (JGI) 3300001045 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 40.83194 2.44806 1389448 4729 11 1 27 0 SRX1981953 Unrestricted 0.0 Metagenome 3300039448 *Microbiome Permanent Draft Seawater microbial communities from the Faroe-Shetland Channel, North-East Atlantic Ocean Seawater microbial communities from the Faroe-Shetland Channel, North-East Atlantic Ocean - 5mSIP-HEX-1 DOE Joint Genome Institute (JGI) 3300039448 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tony.gutierrez@hw.ac.uk Tony Gutierrez No Environmental Aquatic Oceanic Marine Unclassified seawater 60.38 -4.54 116564696 146702 49 0 61 0 SRX9536172 Unrestricted 310.24 Metagenome 3300056868 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F2L_9_!0 DOE Joint Genome Institute (JGI) 3300056868 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9762234 -81.70738203 2256014837 3420604 679 4 1036 5 Unrestricted 14.85 Metagenome 3300027909 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Bulk soil microbial communities from a Populus tree surrounding site in Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027909 Metagenome Analysis spades v. 3.11.1 Yes Yes pelletierda@ornl.gov Dale Pelletier No Environmental Terrestrial Tree plantation Soil Unclassified Bulk soil 35.8443 -83.9607 4293335368 8739559 1158 36 1985 61 SRX2840906 Unrestricted 0.0 Metagenome 3300041067 *Microbiome Permanent Draft Contaminated soil microbial communities from Humid Pampas, Chascomus Partido, Argentina Control soil microbial communities from Humid Pampas, Chascomus Partido, Argentina - L4_974 Illumina 3300041067 Metagenome Analysis Megahit v. 1.2.10 released by JGI data releasing policy No Yes valeria.imperato@uhasselt.be Valeria Imperato No Environmental Terrestrial Unclassified Soil Agricultural land Control soil -35.5787 -58.0138 15626620 31617 33 5 58 3 0.0 Metagenome 3300028237 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen10, Rep 2, Chloramphenicol (External Submission) DOE Joint Genome Institute (JGI) 3300028237 Metagenome Analysis No Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 264326577 506653 109 55 156 101 Unrestricted 0.0 Metagenome 3300026054 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026054 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.000706 -121.624306 51819384 146167 163 2 234 6 SRX7188929 Unrestricted 0.0 Metagenome 3300009102 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from Mariana Trench to uncover new lineages of life (NeLLi) - CR04 metaG DOE Joint Genome Institute (JGI) 3300009102 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes eaeloefadrosh@lbl.gov, EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Ocean trench Marine Sediment Deep subsurface 12.4764 144.8648 2181931092 4376710 1166 15 2001 27 SRX3203977 Unrestricted 0.0 Metagenome 3300038385 *Microbiome Permanent Draft Groundwater microbial communities from a tube well in Barasat, West Bengal, India - BS Groundwater microbial communities from a tube well in Barasat, West Bengal, India - BS08 CeGaT 3300038385 Metagenome Analysis Megahit v. 1.2.9 released by JGI data releasing policy No Yes anumeha.saha@gmail.com ANUMEHA SAHA No Environmental Aquatic Groundwater Freshwater Contaminated Groundwater 22.73653 88.47148 145549466 228309 105 0 180 0 0.0 Metagenome 3300060883 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Lower Teakettle, Sierra National Forest, California, USA - TEAK_005-O-20210728-comp-1 DOE Joint Genome Institute (JGI) 3300060883 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 37.058229 -118.988578 1557990773 2654815 558 99 848 158 Unrestricted 13.14 Metagenome 3300049233 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB8 DOE Joint Genome Institute (JGI) 3300049233 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 82498408 200211 221 10 524 5 Unrestricted 22.19 Metagenome 3300041947 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - C_31_wk_5 DOE Joint Genome Institute (JGI) 3300041947 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9617 -107.031 153197492 443618 250 15 457 14 SRX14809814 Unrestricted 7.93 Metagenome 3300027229 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1549B-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027229 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2322 -123.8817 158383571 333219 173 32 281 64 SRX2753721 Unrestricted 0.0 Metagenome 7000000220 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 763860675 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000220 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 9530855 18781 0 0 0 0 SRX024109 0.0 Metagenome 3300036941 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B6.2_Sample6.Rodeo2.Well1132 DOE Joint Genome Institute (JGI) 3300036941 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 343815663 599546 310 0 475 0 SRX8356078 Unrestricted 26.21 Metagenome 3300033442 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Root nodule microbial communities collected in Santa Monica, California, United States - Edamame nodules 1 DOE Joint Genome Institute (JGI) 3300033442 Metagenome Analysis spades v. 3.12.0 Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Host-associated Plants Nodule Roots Unclassified root nodules 34.0136 -118.4673 733197162 842556 22 21 33 39 SRX6453228 Unrestricted 59.19 Metagenome 3300032046 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40 DOE Joint Genome Institute (JGI) 3300032046 Metagenome Analysis spades v. 3.12.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5072 -110.3564 3047306776 5804162 1535 13 2502 8 SRX6380971 Unrestricted 18.1 Metagenome 3300056815 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 S1 1-5 (re-filtered) (version 2) DOE Joint Genome Institute (JGI) 3300056815 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3532867 19.0474583 303402514 350977 79 12 81 12 Restricted 14.94 Metagenome 3300003436 *Microbiome Permanent Draft Whitefly associated endosymbiont microbial communities from Neve Yaar, Israel Whitefly Bemisia tabaci associated secondary symbiont microbial communities from Neve Yaar, Israel - sample Cardinium_whitefly 3300003436 Metagenome Analysis released by JGI data releasing policy No Yes itaiopa6@gmail.com Itai Opatovsky No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Whitefly Bemisia tabaci associated 32.708101 35.179264 3665908 4041 2 0 2 0 0.0 Metagenome 3300002032 *Microbiome Permanent Draft Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease Delisea pulchra microbial communities from Sydney, Australia, affected by bleaching disease - BBAY56 3300002032 Metagenome Analysis IDBA-UD + SOAPdenovo + GAA released by JGI data releasing policy No Yes t.thomas@unsw.edu.au Torsten Thomas No Host-associated Algae Ectosymbionts Red algae Unclassified Delisea pulchra -33.59 151.13 502653657 1649849 101 52 241 81 0.0 Metagenome 3300028026 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in the Atlantic and Pacific Ocean Tube worm associated microbial communities from hydrothermal vent at the East Pacific Rise, Pacific Ocean - Tevnia DOE Joint Genome Institute (JGI) 3300028026 Metagenome Analysis spades v. 3.11.1 Yes Yes pgirguis@oeb.harvard.edu Peter Girguis No Host-associated Annelida Unclassified Integument Unclassified tube worm surface 9.8441 -104.2969 440506227 703030 168 9 260 22 SRX5246668 Unrestricted 22.15 Metagenome 3300035437 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_1_15_6 mgh University of Alberta 3300035437 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 93708197 117869 41 0 56 1 0.0 Metagenome 7000000604 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764892411 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000604 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 79214011 151592 0 0 0 0 0.0 Metagenome 3300049014 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - I5_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049014 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 48067804 123809 141 8 219 18 Unrestricted 0.0 Metagenome 3300043619 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 139-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043619 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9354 -107.0122 329619571 863723 320 27 598 42 Unrestricted 8.02 Metagenome 3300044533 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME24Oct2018-rr0987 DOE Joint Genome Institute (JGI) 3300044533 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 840428018 1262759 309 93 387 129 Unrestricted 21.34 Metagenome 3300005213 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D2 DOE Joint Genome Institute (JGI) 3300005213 Metagenome Analysis Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.000706 -121.624306 584986559 1866458 785 5 1741 8 SRX7144822 Unrestricted 0.0 Metagenome 3300039167 *Microbiome Permanent Draft Organic and conventional farm associated microbial communities from Canada and USA Wastewater microbial communities from natural feedlot in Alberta, Canada - WW89 Colorado State University 3300039167 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 53.5 -112.06 134597857 270609 211 4 289 8 0.0 Metagenome 3300038717 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample38 King Abdulaziz City for Science and Technology (KACST) 3300038717 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 25.46 36.6 43338114 109644 54 0 123 0 SRX1097606 0.0 Metagenome 3300018039 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071402CT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300018039 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1302653416 2622911 1091 61 1801 88 SRX4071965 Unrestricted 13.65 Metagenome 3300010274 *Microbiome Permanent Draft Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 11_42_5_180_A3 metaG DOE Joint Genome Institute (JGI) 3300010274 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes Steve.Brown@lanzatech.com Steven Brown Yes 30202438 Engineered Bioreactor Anaerobic Semi-continuous Digestate Switchgrass degrading 43.726 -72.1429 262498932 409226 531 1 707 3 SRX3290059 Unrestricted 0.0 Metagenome 3300043405 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Teakettle 2 Creek, Sierra National Forest, California, USA - teakettle2_2019_sw_WHONDRS-S19S_0032 DOE Joint Genome Institute (JGI) 3300043405 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 36.9549 -119.0237 293550530 541302 436 92 783 161 Unrestricted 22.65 Metagenome 3300041833 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - A_29_wk_5 DOE Joint Genome Institute (JGI) 3300041833 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9514 -106.986 118103888 363465 237 2 491 8 SRX14809618 Unrestricted 7.62 Metagenome 3300053042 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Biomass microbial communities from acid-phase anaerobic digester in WWTP, Madison, WI, USA - 20210507_SampleA DOE Joint Genome Institute (JGI) 3300053042 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Sludge Anaerobic digester Unclassified Biomass 43.03331 -89.35633 174635166 179969 131 0 120 0 Unrestricted 17.08 Metagenome 3300021377 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 DOE Joint Genome Institute (JGI) 3300021377 Metagenome Analysis spades v. 3.11.1-check Yes Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Host-associated Plants Unclassified Roots Unclassified plant roots -19.2822 -43.5936 1077903568 2911625 798 67 1514 115 SRX4939666 Unrestricted 7.52 Metagenome 3300012938 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015 Shell Corporation 3300012938 Metagenome Analysis idba_ud released by JGI data releasing policy No Yes nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis No Environmental Terrestrial Ranch Soil Agricultural land soil 52.172047 -113.738964 2684419311 11285235 1230 38 2333 81 0.0 Metagenome 3300070948 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_013-O-20200713-COMP-DNA1 3300070948 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 11790568 37525 58 9 122 12 0.0 Metagenome 2077657023 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - sample OSP_B DOE Joint Genome Institute (JGI) 2077657023 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 26913020 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.7315 -110.711389 35803982 81130 0 0 0 0 Unrestricted 0.0 Metagenome 3300047499 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Western Region, Iceland - Sphagnum magellanicum H_MAG_ICE DOE Joint Genome Institute (JGI) 3300047499 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 1618799241 2392215 443 78 619 106 SRX14786706 Unrestricted 11.42 Metagenome 3300037215 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 711 E-3-M DOE Joint Genome Institute (JGI) 3300037215 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0467 418408394 948977 340 4 640 4 SRX8146807 Unrestricted 6.48 Metagenome 3300007011 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 159672603 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007011 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 2496543 9611 9 0 13 5 SRX024575, SRX024576 0.0 Metagenome 3300039189 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Rauer Lake 1, Antarctica - Filla 1, #74 Australian Centre for Ecogenomics 3300039189 Metagenome Analysis Spades v. 3.12.0 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.808167 77.85505 290792707 532288 170 7 270 10 0.0 Metagenome 3300057005 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M2L_30_32 DOE Joint Genome Institute (JGI) 3300057005 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0084363 -81.5683388 848923507 1423979 440 5 844 8 Unrestricted 13.51 Metagenome 3300040077 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_044-M-20160822-COMP-DNA1 Battelle Memorial Institute 3300040077 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 13958479 38171 80 15 109 23 0.0 Metagenome 3300014106 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_211 The George Washington University (GWU) 3300014106 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 25980866 62684 43 2 73 6 SRX656258 0.0 Metagenome 3300056890 *Microbiome Permanent Draft Sediment microbial communities from coastal wetlands in Copper River Delta, Alaska, USA Sediment microbial communities from freshwater pond in Copper River Delta, Alaska, USA - Low-clay-rep2 DOE Joint Genome Institute (JGI) 3300056890 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rcolwell@coas.oregonstate.edu Frederick Colwell No Environmental Aquatic Pond Freshwater Sediment Sediment 60.478 -145.382 427975097 763736 271 10 486 27 Unrestricted 55.48 Metagenome 3300028791 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144 DOE Joint Genome Institute (JGI) 3300028791 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92045766 -106.94845279 776553336 1889586 345 7 634 12 SRX5354691 Unrestricted 11.71 Metagenome 3300046059 *Microbiome Permanent Draft Halite microbial communities from Atacama Desert, Chile Halite microbial communities from Salar Grande, Atacama Desert, Chile - SGT1 Novogene 3300046059 Metagenome Analysis metaWRAP v. 1.3.2 No Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Halite Rock-dwelling (endoliths) Unclassified Halite -20.953 -70.019 111235168 135172 15 2 19 3 0.0 Metagenome 3300047442 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 soil DOE Joint Genome Institute (JGI) 3300047442 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.588049 -123.193187 6.44 224170241 424592 197 12 375 16 Unrestricted 24.16 Metagenome 3300044562 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TSR11 DOE Joint Genome Institute (JGI) 3300044562 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.414 59489103 79877 65 5 70 6 SRX12686873 Unrestricted 259.9 Metagenome 3300008475 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 159369152 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008475 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 3916897 11184 8 0 19 4 SRX023271, SRX023270 0.0 Metagenome 3300012527 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ83 (22.06) DOE Joint Genome Institute (JGI) 3300012527 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.0267 163.8204 670906171 1296057 402 0 676 1 SRX3372419 Unrestricted 0.0 Metagenome 3300053099 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 endosphere DOE Joint Genome Institute (JGI) 3300053099 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.588348 -123.19403 546295275 712740 176 140 241 144 Unrestricted 15.83 Metagenome 3300059694 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-058-2021 DOE Joint Genome Institute (JGI) 3300059694 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes viola.krukenberg@montana.edu Viola Krukenberg No Environmental Aquatic Sediment Thermal springs Unclassified Hot spring sediment 44.57042 -110.80522 101128635 113923 67 0 81 0 Unrestricted 14.24 Metagenome 3300025707 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI037_S3LV_125m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025707 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 502142591 961912 323 28 442 39 Unrestricted 0.0 Metagenome 3300064938 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 744 in Lacombe, Alberta, Canada - S00JY_0389 Microbiome Insights 3300064938 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.27312777 -113.310707 25024746 39110 36 1 84 1 0.0 Metagenome 3300026120 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_D2_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026120 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4965 -122.133 251629837 518739 260 5 453 11 SRX7077240 Unrestricted 0.0 Metagenome 3300054066 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin11_10_metaG re-annotation DOE Joint Genome Institute (JGI) 3300054066 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1179424170 2480777 605 77 1067 111 SRX3293635 0.0 Metagenome 3300006136 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t1_691M_inflammed - microbial_metagenome University of Texas Southwestern Medical Center 3300006136 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 162132224 321650 124 0 188 0 0.0 Metagenome 3300061651 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0082 Microbiome Insights 3300061651 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 426088786 613015 121 2 172 3 0.0 Metagenome 2166559010 *Microbiome Permanent Draft Microbial communities from the Atlantic Ocean and human feces from France, grouped together for a comparative study Human fecal microbial communities from France, for comparison studies - Human4 (TS3 0595) 454 Life Sciences 2166559010 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Host-associated Mammals: Human Large intestine Digestive system Fecal Environmental and host-associated 45.460129 4.495284 90676195 183716 614 5 1116 3 0.0 Metagenome 3300006669 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T14 (1) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006669 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 55029819 105808 56 0 118 0 0.0 Metagenome 3300019864 *Microbiome Permanent Draft Marine microbial communities from Tor Caldara Marine pioneer microbial mat bacterial communities from Tor Caldara shallow water vent, Tyrrhenian Sea, Italy - TCM3 re-assembly(megahit) Molecular Research LP (MR DNA) 3300019864 Metagenome Analysis Megahit released by Sushmita Patwardhan No Yes sushmita.patwardhan@gmail.com Sushmita Patwardhan No Environmental Aquatic Hydrothermal vents Marine Microbial mats Marine microbial mat 41.48583333 12.58972222 195734620 460376 195 11 331 24 0.0 Metagenome 3300000975 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP0959 DOE Joint Genome Institute (JGI) 3300000975 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -27.98 63.25 23559049 53642 36 28 99 34 SRX1982768 Unrestricted 0.0 Metagenome 3300039025 *Microbiome Draft FORHOT Natural soil warming experiment in Iceland Soil microbial communities from grassland in Hveragerdi, Iceland - GO4-A Biomedical Sequencing Facility, Vienna Austria 3300039025 Metagenome Analysis spades v. 3.13.1 released by JGI data releasing policy Yes Yes craig.herbold@microbial-ecology.net Craig Herbold No Environmental Terrestrial Unclassified Soil Grasslands Soil 64.025 -21.205 667449118 922407 126 14 156 9 0.0 Metagenome 3300041570 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_278 MetaG AgResearch, New Zealand, Mosgeil 3300041570 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1553140597 3276807 337 49 1206 67 0.0 Metagenome 3300014757 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS53_3 University of Hohenheim 3300014757 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 80804170 138434 62 1 126 1 0.0 Metagenome 3300001428 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 415-3 deep-092012 DOE Joint Genome Institute (JGI) 3300001428 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 63437055 164125 117 6 185 7 SRX1987677 Unrestricted 0.0 Metagenome 3300002511 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - ETNP_2_1000 DOE Joint Genome Institute (JGI) 3300002511 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 18.92 -108.7999 146894768 388914 20 2 26 1 SRX2557417 Unrestricted 0.0 Metagenome 3300025156 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4569-2 3-6 cm metaG (SPAdes) (version 4) DOE Joint Genome Institute (JGI) 3300025156 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; teske@email.unc.edu Ramunas Stepanauskas; Andreas Teske No Environmental Aquatic Hydrothermal vents Marine Sediment Marine hydrothermal vent 27.0078 -111.4071 944352716 2329548 1120 12 1941 19 SRX2525187 Unrestricted 0.0 Metagenome 3300027625 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027625 Metagenome Analysis spades v. 3.11.1 Yes Yes loy@microbial-ecology.net; Michael.Pester@dsmz.de Alexander Loy; Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.1318 11.881 439606007 832262 103 0 180 0 Unrestricted 0.0 Metagenome 3300056684 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.3W.10 SIP fraction DOE Joint Genome Institute (JGI) 3300056684 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 161635180 270346 188 14 266 17 Unrestricted 21.28 Metagenome 3300016660 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water catchment in Singapore - WC_Site 2b, Aug Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016660 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 1.35 103.87 71141932 99094 12 3 18 3 0.0 Metagenome 3300031783 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090729_R4cd DOE Joint Genome Institute (JGI) 3300031783 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 339344957 696376 215 2 310 3 SRX6411889 Unrestricted 328.08 Metagenome 3300009697 *Microbiome Permanent Draft Host-associated microbial communities from peat moss Sphagnum species from Minnesota, USA Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum magellanicum MG DOE Joint Genome Institute (JGI) 3300009697 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes joel.kostka@biology.gatech.edu Joel Kostka No Host-associated Plants Unclassified Peat moss Unclassified Host-associated 47.5028 -93.4828 1476841390 2279134 711 216 918 400 SRX3006921 Unrestricted 0.0 Metagenome 3300021084 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 12015 DOE Joint Genome Institute (JGI) 3300021084 Metagenome Analysis spades v. 3.10.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.7468 -122.0193 1120280605 2408645 700 148 1100 275 SRX4010479 Unrestricted 24.99 Metagenome 3300009901 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S4 University of New South Wales 3300009901 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 37975718 67997 16 7 14 12 0.0 Metagenome 3300013777 *Microbiome Permanent Draft Marine Prochlorococcus and Synechococcus communites from Sargasso sea and California currents Marine microbial communites from Sargasso Sea - Prochlorococcus B270 surface UCI 3300013777 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 291980 1233 1 0 4 0 SRX379267 0.0 Metagenome 3300002837 *Microbiome Permanent Draft Biogas reactor microbial communities from Swedish University of Agricultural Sciences, Alnarp, Sweden, and As, Norway that are enriched on cellulose Biogas reactor microbial communities from SLU, Sweden, that are enriched on cellulose - Sample No3 60kmer 3300002837 Metagenome Analysis released by JGI data releasing policy No Yes phil.pope@nmbu.no Phil Pope No Engineered Bioreactor Biogas Anaerobic Unclassified Biogas reactor 55.656904 13.082968 241812132 433246 274 1 531 2 0.0 Metagenome 3300011817 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00781 Weill Cornell Medical College 3300011817 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.59 -73.95 39799497 57166 17 0 25 0 SRX822747 0.0 Metagenome 3300017822 *Microbiome Permanent Draft Coastal wetland sediment microbial communities from the Mid-Atlantic and Southeast Atlantic Coast of USA, responding to salinity intrusion. Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2 DOE Joint Genome Institute (JGI) 3300017822 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Freshwater sediment 35.9061 -76.1569 664755859 1415161 404 3 660 5 SRX4367124 Unrestricted 5.35 Metagenome 3300006801 *Microbiome Permanent Draft Agricultural soil microbial communities from Utah and Georgia to study Nitrogen management Agricultural soil microbial communities from Utah to study Nitrogen management - Steer compost 2011 DOE Joint Genome Institute (JGI) 3300006801 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jeanette.norton@usu.edu Jeanette Norton No Environmental Terrestrial Agricultural land Soil Unclassified Agricultural soil 41.7655 -111.8143 1824615408 4430635 4376 51 7101 88 SRX2924335 Unrestricted 0.0 Metagenome 3300029386 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 091_4_30_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029386 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 264280221 348412 277 0 346 0 0.0 Metagenome 3300071078 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_005-M-20180227-COMP-DNA1 3300071078 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 2193187 7325 67 5 116 8 0.0 Metagenome 3300003844 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor_6/25/2014_ DNA DOE Joint Genome Institute (JGI) 3300003844 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 371042174 660246 328 4 460 12 SRX2714813 Unrestricted 0.0 Metagenome 3300043215 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_100m_C4_20cm25cm (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043215 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 37.1343 -121.4557 106190589 174932 97 0 182 1 SRX9141777 Unrestricted 128.41 Metagenome 3300013001 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta sexdens ASBM3 DOE Joint Genome Institute (JGI) 3300013001 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Fungi Unclassified Mycelium Unclassified fungus garden -21.167 -47.851 559676975 1038037 842 125 1294 192 Unrestricted 49.43 Metagenome 3300011531 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01240 Weill Cornell Medical College 3300011531 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.62 -73.97 23376451 33057 13 0 22 0 SRX823195 0.0 Metagenome 3300020367 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000508 (ERX556112-ERR599005) CEA Genoscope 3300020367 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -8.7887 -17.9142 475064840 1281535 384 52 685 115 0.0 Metagenome 3300043268 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from Nevada, United States - South Indian Spring (SIS_S4) (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043268 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified Desert spring 36.4265 -116.3098 7.37 296331792 443755 170 10 260 15 SRX9167622 Unrestricted 99.64 Metagenome 3300027494 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepB_8d DOE Joint Genome Institute (JGI) 3300027494 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 175966350 299130 144 14 174 20 SRX5245198 Unrestricted 13.94 Metagenome 3300037405 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_C2 DOE Joint Genome Institute (JGI) 3300037405 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 383745129 833313 194 41 352 68 SRX9146878 Unrestricted 6.68 Metagenome 3300070774 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_001-M-20180709-COMP-DNA1 3300070774 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 21015667 61873 45 1 69 1 0.0 Metagenome 3300000603 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 13JUN2007 epilimnion DOE Joint Genome Institute (JGI) 3300000603 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300028508 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 2 Selected contigs with viral hallmark genes 2 Autonomous University of Barcelona 3300028508 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 1024537 1419 0 0 0 0 0.0 Metagenome 3300042653 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A43 University of California, Davis 3300042653 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 288491734 812170 370 12 758 20 0.0 Metagenome 3300020016 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - L3m1 DOE Joint Genome Institute (JGI) 3300020016 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9138 -106.8952 333372090 726302 276 31 615 48 SRX3944042, SRX3944041 Unrestricted 0.0 Metagenome 3300027273 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N2_40_50 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027273 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380273 -119.2723038 165834884 415246 177 1 329 3 SRX2523198 Unrestricted 0.0 Metagenome 3300029019 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 341_12M Beijing Genomics Institute (BGI) 3300029019 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 75123082 100085 60 0 93 0 ERX491091 0.0 Metagenome 3300049775 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_A_5_drought DOE Joint Genome Institute (JGI) 3300049775 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 192972035 459791 354 16 673 22 Unrestricted 12.17 Metagenome 3300005403 *Microbiome Permanent Draft Bioremediated contaminated groundwater microbial communities from North Railroad Avenue plume (NRAP), New Mexico Bioremediated contaminated groundwater microbial communities from EPA Superfund site, New Mexico - SAE3-05 reassembly with SPADES DOE Joint Genome Institute (JGI) 3300005403 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, NNIvanova@lbl.gov; rebecca.reiss@nmt.edu Natasha Ivanova, Natalia Ivanova; Rebecca Reiss Yes 27980706 Environmental Aquatic Groundwater Deep subsurface Contaminated Bioremediated contaminated groundwater 35.992 -106.0797 241269698 332153 271 1 357 2 SRX3322776 0.0 Metagenome 3300014831 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Sweden Raw sludge microbial communities from sewage treatment plant in Sweden - SWESTP63 - Kappala-primary 226 University of Gothenburg 3300014831 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified raw primary sludge 59.355554 18.227079 467169048 1011911 299 7 595 16 0.0 Metagenome 3300014517 *Microbiome Permanent Draft Halorespirating mixed culture microbial communities from Toronto, Canada Halorespirating mixed culture microbial communities from Toronto, Canada - CF50 DNA University of Toronto 3300014517 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Bioremediation Unclassified Hydrocarbon Unclassified Halorespirating mixed culture 23821950 41554 25 0 47 0 SRX181448 0.0 Metagenome 3300053161 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere DOE Joint Genome Institute (JGI) 3300053161 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.588158 -123.192616 747142582 1193122 244 132 360 172 Unrestricted 12.36 Metagenome 3300025071 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - LP-36 (SPAdes) DOE Joint Genome Institute (JGI) 3300025071 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 50.0 -145.0 136249424 312614 29 4 56 6 Unrestricted 0.0 Metagenome 3300007532 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_H2O_MG DOE Joint Genome Institute (JGI) 3300007532 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Pond water 37.4965 -122.133 398769257 830337 431 3 699 2 SRX2523672 Unrestricted 0.0 Metagenome 3300057159 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2020-0123 DOE Joint Genome Institute (JGI) 3300057159 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.70406 -83.25291 777041545 1602074 461 154 777 221 Unrestricted 16.18 Metagenome 3300040701 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Mid-Atlantic, VA, USA - SCBI_003-M-20140915-COMP-DNA1 Argonne National Laboratory 3300040701 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.89292 -78.1395 1143149 3495 20 5 46 4 ERX2133983 0.0 Metagenome 3300002324 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP17-I5 3300002324 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300002751 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C33A6_35 DOE Joint Genome Institute (JGI) 3300002751 Metagenome Analysis Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 29815965 71358 79 18 150 31 SRX1991083 Unrestricted 0.0 Metagenome 3300049262 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CB20 DOE Joint Genome Institute (JGI) 3300049262 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 8824324 24216 68 2 151 4 Unrestricted 19.36 Metagenome 3300002063 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - A-R4 J. Craig Venter Institute (JCVI) 3300002063 Metagenome Analysis Released per Alexandra J. Roth Schulze (April 1, 2016) No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 231184377 885451 63 22 201 23 0.0 Metagenome 3300005322 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila suzukii female 1 gut Cornell University 3300005322 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy No Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila suzukii female adult gut 42.875296 -77.006403 225980939 386285 3 12 2 26 0.0 Metagenome 3300011264 *Microbiome Permanent Draft Acid mine drainage microbial communities from Malanjkhand copper mine, India Acid mine drainage microbial communities from Malanjkhand copper mine, India - M16 k-mer 63 Xcelris labs Ltd 3300011264 Metagenome Analysis Metavelvet released by JGI data releasing policy No Yes psar@hijli.iitkgp.ernet.in Pinaki Sar No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage sediment 22.023017 80.732183 228872273 584747 542 79 711 79 0.0 Metagenome 3300059425 *Microbiome Permanent Draft Sorghum rhizosphere and bulk soil microbial communities from University of Arizona Maricopa Agricultural Center, AZ, USA Soil microbial communities from sorghum plot in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_20210810 DOE Joint Genome Institute (JGI) 3300059425 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Agricultural land Soil Unclassified Soil 33.07735 -111.974819 454885358 1216026 670 24 1342 36 Unrestricted 6.99 Metagenome 3300001821 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM23, ROCA_DNA122_2.0um_25a 3300001821 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River plume Marine Plankton Marine plankton 11.3123 -56.4267 13226016 28122 10 12 17 10 0.0 Metagenome 3300020389 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008) CEA Genoscope 3300020389 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -61.9898 -49.3613 869957602 1959803 485 116 844 256 0.0 Metagenome 3300043463 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Golan Heights, Israel - jordanrivershai4_2019_sw_WHONDRS-S19S_0058 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043463 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 32.8993 35.6136 370852835 660905 313 74 535 122 Unrestricted 26.2 Metagenome 3300000287 *Microbiome Permanent Draft Human fecal microbial communities from University College Cork, Ireland, of the elderly Irish population Human fecal microbial communities from Cork, Ireland - EM272 Beijing Genomics Institute (BGI), Macrogen 3300000287 Metagenome Analysis released per JGI data release policy Yes Yes mclaesson@bioinfo.ucc.ie Marcus Claesson No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.907 -8.472 105120167 211115 374 0 603 0 0.0 Metagenome 3300047536 *Microbiome Permanent Draft Floating fern leaf microbial communities from various locations Floating fern leaf microbial communities from Singapore - 0529_IRRI DOE Joint Genome Institute (JGI) 3300047536 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dave.armitage@gmail.com David Armitage No Host-associated Plants Phylloplane/Leaf Phyllosphere Endophytes Leaf 1.3624 103.7996 8344761 12531 5 4 8 5 Unrestricted 434.92 Metagenome 3300038575 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark - 1615-PRJ1066-RL-Sewage-50_S14 Technical University of Denmark 3300038575 Metagenome Analysis Yes Yes No Engineered Wastewater Unclassified Sewage Unclassified Sewage 55.694986 12.615026 14512054 32438 99 1 192 0 ERX1596350 0.0 Metagenome 3300070798 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_003-M-20180716-COMP-DNA1 3300070798 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 8591471 27619 57 4 102 6 0.0 Metagenome 3300027478 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK03-E (SPAdes) DOE Joint Genome Institute (JGI) 3300027478 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 26320862 87595 86 6 146 11 SRX2575261 Unrestricted 0.0 Metagenome 3300046350 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_133 DOE Joint Genome Institute (JGI) 3300046350 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9703 -106.997 181065801 622121 1322 12 2709 30 Restricted 0.0 Metagenome 3300001675 *Microbiome Permanent Draft Alviniconcha endosymbiont microbial communities from the Eastern Lau Spreading center hydrothermal vents, Pacific Ocean Alviniconcha endosymbiont microbial communities from the Eastern Lau Spreading center hydrothermal vents, Pacific Ocean - Gamma1_v2 Harvard University 3300001675 Metagenome Analysis released per JGI data release policy No Yes rbeinart@fas.harvard.edu Roxanne Beinart No Host-associated Mollusca Gills Respiratory system Intracellular Alviniconcha endosymbiont -20.76389 -176.19167 3670706 4185 1 0 1 1 0.0 Metagenome 3300035124 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D1103U12 DOE Joint Genome Institute (JGI) 3300035124 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0387 491069257 1255215 562 3 957 3 SRX8255821 Unrestricted 6.16 Metagenome 3300071094 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from North Sterling, Colorado, USA - STER_026-M-20160816-COMP-DNA1 3300071094 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Agricultural land Soil 119221 420 4 0 2 0 0.0 Metagenome 3300032122 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4 DOE Joint Genome Institute (JGI) 3300032122 Metagenome Analysis spades v. 3.13.0 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Bulk soil soil 39.6475 -79.9369 1467471286 3759875 1198 20 2222 31 SRX5809521 Unrestricted 7.49 Metagenome 3300014014 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01099 Weill Cornell Medical College 3300014014 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.63 -73.94 16476008 34406 16 3 22 3 SRX823054 0.0 Metagenome 3300022140 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v3) (version 3) DOE Joint Genome Institute (JGI) 3300022140 Metagenome Analysis spades v. 3.11.1-check Yes Yes bcampb7@clemson.edu; chenf@umces.edu Barbara Campbell; Feng Chen Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.12 -75.25 12438719 40767 0 0 0 0 SRX2838064, SRX3786194, SRX3786195 Unrestricted 0.0 Metagenome 3300005928 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica - Antarctic Deep Lake Metagenome 02WF5 DOE Joint Genome Institute (JGI) 3300005928 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli, Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5627 78.1882 127444550 306140 183 9 304 17 SRX2745745 Unrestricted 0.0 Metagenome 3300010260 *Microbiome Permanent Draft Animal gut microbial communities from fecal samples from Wisconsin, USA Eastern black-and-white colobus group fecal microbial communities from Wisconsin, USA - Cm827 metagenome DOE Joint Genome Institute (JGI) 3300010260 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes apneumann2@wisc.edu Anthony Neumann No Host-associated Mammals Large intestine Digestive system Fecal Eastern black-and-white colobus group fecal 43.07 -89.4 144177029 220975 432 0 620 0 SRX2506179 Unrestricted 0.0 Metagenome 3300050284 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_42 DOE Joint Genome Institute (JGI) 3300050284 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -74.179 162.515 243557254 419588 29 14 43 18 SRX18235950 Restricted 43.2 Metagenome 3300057032 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M2P_9_10 DOE Joint Genome Institute (JGI) 3300057032 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0099406 -81.5672344 1579172843 2363674 682 2 1094 3 Unrestricted 13.13 Metagenome 3300050819 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Utah, USA - redbuttecreek_2019_sed_WHONDRS-S19S_0086 DOE Joint Genome Institute (JGI) 3300050819 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 40.7797 -111.8064 1416987516 3422424 1258 68 2488 127 Restricted 14.93 Metagenome 3300009823 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N1_40_50 DOE Joint Genome Institute (JGI) 3300009823 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380143 -119.2723688 91203658 210232 195 19 392 25 SRX2523202 Unrestricted 0.0 Metagenome 3300038396 *Microbiome Permanent Draft Industrial fuel microbial communities from aircraft samples near Hamburg, Germany Industrial fuel microbial communities from aircraft samples near Hamburg, Germany - 180711_BF_001 HPI Heinrich-Pette-Institut 3300038396 Metagenome Analysis MetaSpades v. 3.1 released by JGI data releasing policy No Yes wolfgang.streit@uni-hamburg.de; ines.krohn@uni-hamburg.de Wolfgang Streit; Ines KROHN No Engineered Industrial production Unclassified Engineered product Unclassified Industrial fuel 53.338 9.5152 198677971 444612 75 35 172 61 0.0 Metagenome 3300032676 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18023 DOE Joint Genome Institute (JGI) 3300032676 Metagenome Analysis spades v. 3.13.0 Yes Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.0411 -89.6861 768047594 1434006 419 34 671 75 SRX7891596 Unrestricted 17.26 Metagenome 3300024997 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado, USA - 2008 BG 13ft (version 2) DOE Joint Genome Institute (JGI) 3300024997 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 26033198 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.55 -107.97 1335093 1597 0 0 0 0 SRX2021635, SRX1987163, SRX2021633, SRX2021634 Unrestricted 0.0 Metagenome 3300008628 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human palatine tonsils microbial communities from NIH, USA - visit 1, subject 763496533 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008628 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Tonsils Lymphatic system Palatine/Faucial Human 39.0042816 -77.1012173 84641554 140694 59 0 96 0 SRX024928 0.0 Metagenome 3300000269 *Microbiome Permanent Draft Lotic microbial communities from Mississippi River at two locations in the state of Minnesota Lotic microbial communities from Mississippi River at two locations in the state of Minnesota, sample from River Site 7, Mississippi Headwaters University of Minnesota 3300000269 Metagenome Analysis No Yes gibb0098@umn.edu Brian Gibbens No Environmental Aquatic Lotic Freshwater Unclassified Lotic 44.745767 -92.85015 183070581 545416 268 56 566 105 0.0 Metagenome 3300005208 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D2 DOE Joint Genome Institute (JGI) 3300005208 Metagenome Analysis Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.107536 -121.649704 427312518 1404832 667 41 1399 40 SRX7144658 Unrestricted 0.0 Metagenome 3300020523 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 18MAY2011 deep hole epilimnion ns (SPAdes) DOE Joint Genome Institute (JGI) 3300020523 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 110427401 216454 82 29 130 35 SRX1989293 Unrestricted 0.0 Metagenome 3300051216 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water microbial communities from Sandhills, Nebraska, United States - NSL_Bean_2020_MMG DOE Joint Genome Institute (JGI) 3300051216 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.7748 -102.5295 919679501 1613861 146 3 202 2 Unrestricted 50.79 Metagenome 3300006203 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t30_698M_inflammed - microbial_metagenome University of Texas Southwestern Medical Center 3300006203 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 180189946 360444 132 1 192 0 0.0 Metagenome 3300006344 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0500m University of Hawaii 3300006344 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes ktennessen@lbl.gov Kristin Tennessen No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 223283541 494940 412 39 596 54 0.0 Metagenome 3300045190 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_3_F DOE Joint Genome Institute (JGI) 3300045190 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 148920290 177790 75 1 103 4 Unrestricted 119.22 Metagenome 3300041797 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - C_33_wk_3 DOE Joint Genome Institute (JGI) 3300041797 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9702 -107.03 116539210 340825 188 7 359 14 SRX14808375 Unrestricted 6.59 Metagenome 3300021587 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-9-10_MG DOE Joint Genome Institute (JGI) 3300021587 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.0114 -110.5956 53786313 138457 94 0 172 1 SRX3982305 Unrestricted 37.2 Metagenome 3300053126 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 endosphere DOE Joint Genome Institute (JGI) 3300053126 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.588219 -123.193899 502767912 772893 219 110 345 142 Unrestricted 13.39 Metagenome 3300036791 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Eucalyptus forests in New South Wales, Australia - Eu_2 DOE Joint Genome Institute (JGI) 3300036791 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Tropical forest Soil Bulk soil soil -33.6 150.0 1817362026 2946411 322 23 532 41 SRX8384353 Unrestricted 14.85 Metagenome 3300003599 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_150m_DNA DOE Joint Genome Institute (JGI) 3300003599 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 150353296 286010 131 6 217 5 Unrestricted 0.0 Metagenome 3300006923 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG DOE Joint Genome Institute (JGI) 3300006923 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.51 -76.2 195311402 450932 4 0 3 1 SRX2928474 Unrestricted 0.0 Metagenome 3300070501 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Environmental Research Center, Maryland, USA - SERC_002-M-20170712-COMP-DNA1 Battelle Memorial Institute 3300070501 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 38.895036 -76.558917 4.82-5.64 3276147 10898 30 6 67 10 0.0 Metagenome 3300007505 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila suzukii female 6 gut Cornell University 3300007505 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy Yes Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila suzukii female adult gut 42.875296 -77.006403 431759735 635606 120 8 203 22 0.0 Metagenome 3300001866 *Microbiome Permanent Draft Bioremediated contaminated groundwater microbial communities from North Railroad Avenue plume (NRAP), New Mexico Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-23 DOE Joint Genome Institute (JGI) 3300001866 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes reiss@nmt.edu, NNIvanova@lbl.gov; rebecca.reiss@nmt.edu Rebecca Reiss, Natalia Ivanova; Rebecca Reiss Yes 27980706 Environmental Aquatic Groundwater Deep subsurface Contaminated Bioremediated contaminated groundwater 35.992 -106.0797 168772898 348007 201 2 408 2 SRX2554386 Unrestricted 0.0 Metagenome 3300027871 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027871 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 29146959 Environmental Aquatic Wetlands Freshwater Sediment Wetland 41.224 -82.304 1273246744 3179250 982 24 1949 33 SRX2761411 Unrestricted 0.0 Metagenome 3300013590 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100717 University of Pennsylvania 3300013590 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4282984 8256 3 1 5 2 SRX756133 0.0 Metagenome 3300070399 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_037-M-20180710-COMP-DNA1 3300070399 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 37900448 111224 61 8 116 13 0.0 Metagenome 3300035503 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver stomach microbial communities from Maple Ridge, British Columbia, Canada - Beaver3Stomach1 DOE Joint Genome Institute (JGI) 3300035503 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Stomach Digestive system Unclassified stomach 49.18 -122.54 1449987208 2038644 26 14 54 25 SRX8345803 Unrestricted 5.39 Metagenome 3300014233 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 208_L4_2014-6-6 San Diego State University 3300014233 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 570017 2001 16 4 29 18 0.0 Metagenome 3300028142 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_28AUG2017_LD1 DOE Joint Genome Institute (JGI) 3300028142 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 84186399 159804 21 74 28 123 SRX5345913 Unrestricted 18.63 Metagenome 3300044688 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - CSA3D DOE Joint Genome Institute (JGI) 3300044688 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 732563749 1336260 395 40 745 48 Unrestricted 17.69 Metagenome 3300001903 *Microbiome Permanent Draft Benthic lake microbial communities from British Columbia, Canada, for chemocline samples ML7 Pennsylvania State University 3300001903 Metagenome Analysis IDBA released per PI No Yes tlh42@psu.edu Trinity No Environmental Aquatic Lake Freshwater Microbial mats Benthic lake 49.283333 -119.583333 4643588 4747 2 0 3 0 0.0 Metagenome 2149837027 *Microbiome Permanent Draft Marine microbial communities from Deepwater Horizon subsurface plume in Gulf of Mexico Marine microbial communities from Deepwater Horizon subsurface plume in Gulf of Mexico, 52-1 Below Plume DOE Joint Genome Institute (JGI) 2149837027 Metagenome Analysis No Yes rivers@uga.edu Adam R. Rivers, Adam Rivers Yes 23902988 Environmental Aquatic Hydrothermal vents Marine Black smokers Subsurface plume 28.716667 -88.466667 43595665 60113 9 0 48 0 0.0 Metagenome 3300013246 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100312 University of Pennsylvania 3300013246 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 21072177 48120 21 0 26 0 SRX756589 0.0 Metagenome 3300037432 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - WH_101317 DOE Joint Genome Institute (JGI) 3300037432 Metagenome Analysis metaspades v. 3.13.0 Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.8725 -89.3578 313817433 863958 415 44 758 62 SRX9382428 Unrestricted 6.72 Metagenome 3300012363 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG DOE Joint Genome Institute (JGI) 3300012363 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Saprolite Vadose zone soil 39.7291 -123.6419 3140997049 6252765 1423 7 2321 31 SRX3373049 Unrestricted 0.0 Metagenome 3300003113 *Microbiome Permanent Draft Continuous culture Bioreactor microbial community inoculated with sediment from German Wadden Sea Bioreactor microbial communities inoculated from Wadden Sea, Germany - 119 days of incubation Bielefeld University, Max Planck Institute for Marine Microbiology 3300003113 Metagenome Analysis MetaVelvet v. v0.3 Made public because these are downloaded from Genbank No Yes mstrous@mpi-bremen.de Marc Strous Yes 23227024 Engineered Bioreactor Marine sediment inoculum Continuous culture Unclassified Continuous culture Bioreactor 53.303 5.405473 13642592 18634 14 0 21 1 0.0 Metagenome 3300012024 *Microbiome Permanent Draft Norwegian Young Sea Ice 2015 - N-ICE15 Seawater microbial communities from Norwegian Young Sea Ice, Arctic Ocean, Norway, 2015 - N-ICE15, floe 2, site 1, 5m LGC Genomics 3300012024 Metagenome Analysis Ray v 2.3.1 released by JGI data releasing policy No Yes antonioggsousa@gmail.com; cmagalhaes@ciimar.up.pt Antonio Sousa; Catarina Magalh?es No Environmental Aquatic Oceanic Marine Unclassified marine 83.166667 22.016944 333300 1674 10 0 13 0 0.0 Metagenome 3300034112 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191 DOE Joint Genome Institute (JGI) 3300034112 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1309507796 2614066 675 103 1075 136 SRX7622421 Unrestricted 9.78 Metagenome 3300029310 *Microbiome Permanent Draft Human fecal microbial community of Hadza hunter-gatherer and regular subjects from Tanzania and Italy Human fecal microbial community of Hadza hunter-gatherer populations from Tanzania - 10010 University of Bologna 3300029310 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal -3.6347588 35.0828588 213429984 344448 261 3 413 4 0.0 Metagenome 3300001223 *Microbiome Permanent Draft Switchgrass rhizosphere microbial communities from Knoxville, Tennessee, USA Switchgrass Microbiome Oak Ridge National Laboratory 3300001223 Metagenome Analysis Metavelvet released per JGI data release policy No Yes sutturka@utk.edu, sutturka@vols.utk.edu SAGAR UTTURKAR, sagar Utturkar No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 1597244 8734 22 0 41 1 0.0 Metagenome 3300021569 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, sample E2014-0046-100-LTR Downsampled Assembly University of Michigan 3300021569 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7635 -83.3309 9.195 16107198 27586 6 5 4 8 0.0 Metagenome 3300014743 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS64_12 University of Hohenheim 3300014743 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 72100148 122101 45 0 89 0 0.0 Metagenome 3300069384 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Woodworth, Northern Plains, ND, USA - WOOD_002-M-20140925-COMP-DNA1 re-annotation Argonne National Laboratory 3300069384 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12823 -99.24136 10917240 33465 47 7 114 13 ERX2133987 0.0 Metagenome 3300027364 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co AM (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027364 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 187116213 514216 340 17 693 26 SRX2573788 Unrestricted 0.0 Metagenome 3300037724 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site2_nosalt_MVIII_0 DOE Joint Genome Institute (JGI) 3300037724 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Tidal flats microbial mat 20.7452 58.6625 94144004 228338 75 2 111 3 SRX9169875 Unrestricted 36.34 Metagenome 3300037351 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 P1 30-34 DOE Joint Genome Institute (JGI) 3300037351 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0471 760844086 1361286 247 10 403 11 SRX10142347 Unrestricted 11.7 Metagenome 3300016472 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water reservoir in Singapore - WB_Site 5c, Aug Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016472 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Lake Freshwater Unclassified freshwater 1.35 103.87 113820024 143545 35 10 41 11 0.0 Metagenome 3300013971 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Human oral microbial communities from various locations - University of British Columbia - SCG24 University of British Columbia 3300013971 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Unclassified Human oral 1060009 2409 3 0 3 0 SRX143133 0.0 Metagenome 3300009707 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from China - AD_SCU002_MetaG DOE Joint Genome Institute (JGI) 3300009707 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 30.66 104.06 267104554 440293 250 1 377 0 SRX2339078 Unrestricted 0.0 Metagenome 3300027023 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 1 (SPAdes) DOE Joint Genome Institute (JGI) 3300027023 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 26197875 61112 35 0 80 0 SRX4338203 Unrestricted 0.0 Metagenome 3300013736 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00362 Weill Cornell Medical College 3300013736 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.64 -74.07 27093182 47422 26 0 35 0 SRX822334 0.0 Metagenome 3300010150 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG DOE Joint Genome Institute (JGI) 3300010150 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -14.51 -76.2 529237577 1275991 9 0 11 0 SRX3197243, SRX3197244 Unrestricted 0.0 Metagenome 3300043634 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 333-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043634 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9756 -107.0648 761427583 1963162 561 21 1090 38 Unrestricted 7.88 Metagenome 3300049039 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - D2_B_BS (version 2) DOE Joint Genome Institute (JGI) 3300049039 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 65996779 149900 191 9 398 8 Unrestricted 0.0 Metagenome 3300032110 *Microbiome Permanent Draft Microbial communities from the deep biosphere Marine sediment microbial communities from North Pond in Mid-Atlantic Ridge, Atlantic Ocean - 336-U1382-7H-5 re-assembly The Marine Biological Laboratory 3300032110 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Sediment Marine Unclassified Sediment 22.755 -46.081 67326322 191710 111 14 90 20 SRX2467208 0.0 Metagenome 3300038828 *Microbiome Permanent Draft Activated sludge microbial communities from industrial and municipal wastewater treatment plants from various locations in Argentina Activated sludge microbial communities from a municipal sewage treatment plant in Buenos Aires, Argentina - SwgB-13 Institute for Research on Genetic Engineering and Molecular Biology 3300038828 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified Activated sludge -34.47 -58.59 360142515 526649 247 9 380 9 0.0 Metagenome 3300006177 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 DOE Joint Genome Institute (JGI) 3300006177 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier Yes 30320216 Host-associated Plants Endosphere Roots Unclassified Populus endosphere 35.8443 -83.9607 2568847092 8676186 2114 46 4048 82 SRX2748470 Unrestricted 0.0 Metagenome 3300018014 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40 DOE Joint Genome Institute (JGI) 3300018014 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 749384793 1332100 411 4 690 3 SRX3960063 Unrestricted 15.37 Metagenome 3300033555 *Microbiome Permanent Draft Extreme environments viral communities from various locations Glacier ice microbial communities from Ngari, Tibet, China - 14_GP2_30.8 DOE Joint Genome Institute (JGI) 3300033555 Metagenome Analysis spades v. 3.13.0 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Ice Freshwater Glacier ice 35.2833 81.4833 258642185 495944 183 14 174 26 SRX7543077 Unrestricted 22.0 Metagenome 3300061765 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - Spring2.091418 DOE Joint Genome Institute (JGI) 3300061765 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.3045 -110.5227 8-9 100570027 220702 85 3 110 0 Unrestricted 165.96 Metagenome 3300042109 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lake Yojoa, Honduras - Yojoa_01_2020_B_meta (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300042109 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Lake Freshwater Unclassified Freshwater 14.8084 -87.9952 1043976322 1959057 400 134 640 234 Unrestricted 11.89 Metagenome 3300020497 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 18MAY2010 deep hole epilimnion ns (SPAdes) DOE Joint Genome Institute (JGI) 3300020497 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 91023586 168416 51 6 92 12 SRX1988684 Unrestricted 0.0 Metagenome 3300014951 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 599_12M Beijing Genomics Institute (BGI) 3300014951 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 129366466 171707 79 0 136 0 ERX491259 0.0 Metagenome 3300000159 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 10m DOE Joint Genome Institute (JGI) 3300000159 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Photic zone Marine 50.0 -145.0 81858014 186418 105 17 203 27 Unrestricted 0.0 Metagenome 3300009156 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Bulk soil microbial communities from a Populus tree surrounding site in Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300009156 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes pelletierda@ornl.gov Dale Pelletier No Environmental Terrestrial Tree plantation Soil Unclassified Bulk soil 35.8444 -83.9599 5638172185 10795130 2509 110 4106 204 SRX2841166, SRX2841165, SRX2841167 Unrestricted 0.0 Metagenome 3300011638 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01135 Weill Cornell Medical College 3300011638 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -73.93 33534709 43987 11 0 29 1 SRX823090 0.0 Metagenome 3300023235 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #50 DOE Joint Genome Institute (JGI) 3300023235 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 143622133 285793 58 0 83 0 SRX4396532 Unrestricted 28.54 Metagenome 3300011373 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00470 Weill Cornell Medical College 3300011373 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -74.0 9623417 17457 8 0 7 0 SRX822439 0.0 Metagenome 3300022441 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Serpentine Lake, Rottnest Island (WA - Australia) - SL1BM1 JM112 AGRF 3300022441 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -32.002717 115.525989 43679446 76763 38 1 53 1 0.0 Metagenome 7000000435 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764487809 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000435 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 9479923 19202 0 0 0 0 0.0 Metagenome 3300059704 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.715 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059704 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 160946604 368609 156 35 276 52 SRX2753576 Unrestricted 0.0 Metagenome 3300025697 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica- Antarctic Ace Lake Metagenome 02UKC (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025697 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 401517242 934634 276 0 457 3 SRX2746858 Unrestricted 0.0 Metagenome 3300031875 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MS13 DOE Joint Genome Institute (JGI) 3300031875 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 369211308 763354 237 4 327 4 SRX6411433 Unrestricted 181.31 Metagenome 3300049993 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Sediment-water slurry microbial communities from hot spring in Yellowstone National Park, WY, USA - Buffalo_pool_avicel_inc_1 DOE Joint Genome Institute (JGI) 3300049993 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Sediment-water slurry 44.5324 -110.7974 211844362 340388 106 0 170 2 Restricted 349.43 Metagenome 3300022579 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 2 Selected contigs with viral hallmark genes Autonomous University of Barcelona 3300022579 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 1024537 1419 0 0 0 0 0.0 Metagenome 3300025901 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025901 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 2238728591 5737405 1391 87 2514 164 SRX2554599 Unrestricted 0.0 Metagenome 3300028601 *Microbiome Permanent Draft Leachate and groundwater microbial communities from a municipal landfill and adjacent aquifer in Southern Ontario, Canada Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Methane capture system biofilm DOE Joint Genome Institute (JGI) 3300028601 Metagenome Analysis spades v. 3.11.1 Yes Yes laura.hug@uwaterloo.ca Laura Hug No Engineered Solid waste Unclassified Landfill Unclassified landfill leachate 43.442 -80.577 905611696 1440715 825 5 1110 15 SRX5256786 Unrestricted 38.48 Metagenome 3300025221 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0372 (SPAdes) DOE Joint Genome Institute (JGI) 3300025221 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -15.83 -33.41 144877448 294283 163 2 262 8 SRX1983211 Unrestricted 0.0 Metagenome 3300004628 *Microbiome Permanent Draft Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA - Biofuel metagenome 4 (version 1) DOE Joint Genome Institute (JGI) 3300004628 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes hrbeller@lbl.gov Harry Beller Yes 27506494, 29556105 Engineered Bioreactor Unclassified Anaerobic Unclassified Bioreactor 37.8754404 -122.2477251 550558223 1021283 1320 1 1766 5 SRX1671042, SRX1671041, SRX1671040, SRX1671039, SRX1671038, SRX1671037 Unrestricted 0.0 Metagenome 3300028997 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 367_4M Beijing Genomics Institute (BGI) 3300028997 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 68198503 75165 45 0 64 0 ERX491108 0.0 Metagenome 3300017996 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40 DOE Joint Genome Institute (JGI) 3300017996 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 596308720 1071224 330 8 555 19 SRX3960764 Unrestricted 24.49 Metagenome 3300010332 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4571-4 3-6 cm metaG DOE Joint Genome Institute (JGI) 3300010332 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; teske@email.unc.edu Ramunas Stepanauskas; Andreas Teske No Environmental Aquatic Hydrothermal vents Marine Sediment Marine hydrothermal vent 27.0078 -111.4071 1080322849 2490314 1097 9 1855 16 SRX2525221 Unrestricted 0.0 Metagenome 3300040691 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_001-M-20131024-COMP-DNA1 Argonne National Laboratory 3300040691 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 1039789 3370 25 3 43 5 ERX2133926 0.0 Metagenome 3300040227 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_044-M-20160718-COMP-DNA1 Battelle Memorial Institute 3300040227 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 8002866 24884 64 6 115 9 0.0 Metagenome 3300069560 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - NIWO_006-M-20160829-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069560 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.05425 -105.58237 133956105 367638 159 5 332 17 0.0 Metagenome 3300028869 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N1_4 DOE Joint Genome Institute (JGI) 3300028869 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 867001358 2014094 286 15 528 32 SRX5356668 Unrestricted 0.0 Metagenome 3300002618 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A4-12 DOE Joint Genome Institute (JGI) 3300002618 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 429440 1455 22 0 48 2 SRX1991257 Unrestricted 0.0 Metagenome 3300038421 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Sediment microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_North_2 DOE Joint Genome Institute (JGI) 3300038421 Metagenome Analysis metaspades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Wetlands Marine Sediment sediment 26.6774 -80.3753 1408607370 2205555 644 16 1029 20 SRX9405836 Unrestricted 16.34 Metagenome 7000000589 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human right retroauricular crease microbial communities from NIH, USA - visit 2, subject 764083206 replicate 1 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000589 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 59593988 65702 0 0 0 0 SRX024124 0.0 Metagenome 3300027580 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine sediment microbial community from Fremont, CA, USA - Pond A23 Sediment 2 (SPAdes) DOE Joint Genome Institute (JGI) 3300027580 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Enviromental 37.474067 -121.973033 414290309 779749 384 6 651 12 SRX3303078 Unrestricted 0.0 Metagenome 3300000793 *Microbiome Draft Forest soil microbial communities from Amazon Forest, Brazil Forest soil microbial communities from Amazon forest - 2010 replicate II A001 DOE Joint Genome Institute (JGI) 3300000793 Metagenome Analysis released based on JGI ITS Yes Yes jorge@uta.edu, jmrodrigues@ucdavis.edu Jorge Rodrigues, Jorge L. Rodrigues Yes 30083144 Environmental Terrestrial Tropical forest Soil Bulk soil Forest soil -10.171667 -62.7875 297027237 799655 343 7 653 18 Unrestricted 0.0 Metagenome 3300028887 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_02 DOE Joint Genome Institute (JGI) 3300028887 Metagenome Analysis spades v. 3.11.1 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -19.6574 146.8351 3065012227 6627901 3424 50 5383 78 SRX5787111, SRX5787112 Unrestricted 0.0 Metagenome 3300034120 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172 DOE Joint Genome Institute (JGI) 3300034120 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1366793574 2801129 744 111 1083 195 SRX7622350 Unrestricted 10.14 Metagenome 3300042055 *Microbiome Permanent Draft Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - G_a8.2 Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042055 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1237 -89.1404 930105775 905367 2 10 4 11 SRX5234789 0.0 Metagenome 7000000567 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 764325968 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000567 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 10027220 12933 0 0 0 0 SRX024117, SRX098537 0.0 Metagenome 3300039340 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 582_12M Beijing Genomics Institute (BGI) 3300039340 Metagenome Analysis Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 79582447 94480 51 0 81 0 ERX491231 0.0 Metagenome 3300029322 *Microbiome Permanent Draft Human fecal microbial communities from healthy and liver cirrhosis patients in Hangzhou, China Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-59_Run3 Zhejiang University 3300029322 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 30.0 120.0 97366718 150944 104 0 146 1 0.0 Metagenome 3300012298 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100521 University of Pennsylvania 3300012298 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9798210 15711 3 4 9 6 SRX756233 0.0 Metagenome 3300045491 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-506 Genome Quebec 3300045491 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 51.097401 -120.34108 764675039 1726960 329 110 523 201 0.0 Metagenome 3300022848 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #866 DOE Joint Genome Institute (JGI) 3300022848 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 157234838 318626 112 11 178 10 SRX4397204 Unrestricted 15.77 Metagenome 3300029403 *Microbiome Permanent Draft Human fecal microbial communities from healthy and liver cirrhosis patients in Hangzhou, China Human fecal microbial communities from healthy subjects in Hangzhou, China - HD-30_Run1 Zhejiang University 3300029403 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 30.0 120.0 131132884 190104 113 10 184 10 0.0 Metagenome 3300042647 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A38 University of California, Davis 3300042647 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 211431496 592629 288 2 524 3 0.0 Metagenome 3300039275 *Microbiome Permanent Draft Soil microbial communities from the crude oil polluted soil from Bobrka and the control soil from Bialowieza national park, Poland Soil microbial communities from Bialowieza Forest, Poland - X5A3 Illumina 3300039275 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy No Yes valeria.imperato@uhasselt.be Valeria Imperato No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 52.7 23.86667 9727 11 0 0 0 0 0.0 Metagenome 3300009071 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405 DOE Joint Genome Institute (JGI) 3300009071 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 1375835412 2733107 890 149 1616 222 SRX2999739 Unrestricted 0.0 Metagenome 3300023202 *Microbiome Permanent Draft Solar saltern microbial communities from the Namib Desert Sediment microbial communities from solar saltern in the Namib Desert, Swakopmund, Namibia - Eisfeld source 2016 Genewiz Inc. 3300023202 Metagenome Analysis SPAdes v. 3.6.0 released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat and sediment -22.48325 14.57263889 800877163 1202795 266 6 366 4 0.0 Metagenome 3300039897 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA FertPrarie soil microbial communities from Boone County, Iowa, USA - PF23-SM-July2012 Iowa State University 3300039897 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land FertPrarie soil 42.01375 -93.783837 27237831 87707 121 8 262 12 0.0 Metagenome 3300048562 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Woodchip biofilm microbial communities from lab scale WBR in Cornell University, Ithaca, NY, USA - rep3_drw_p2_w0 DOE Joint Genome Institute (JGI) 3300048562 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 703710350 1298563 371 15 599 29 Unrestricted 11.76 Metagenome 3300027107 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF029 (SPAdes) DOE Joint Genome Institute (JGI) 3300027107 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 38789867 106267 45 4 72 5 SRX2014348 Unrestricted 0.0 Metagenome 3300070469 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_003-M-20200706-COMP-DNA1 3300070469 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 22564019 69872 52 3 95 6 0.0 Metagenome 3300048870 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 057-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300048870 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9224 -106.95 293628459 924075 478 24 956 36 Unrestricted 0.0 Metagenome 7000000402 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159591683 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000402 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 77619008 142078 0 0 0 0 0.0 Metagenome 3300003455 *Microbiome Permanent Draft Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S16-KH04A 3300003455 Metagenome Analysis released per JGI data releasing policy No Yes julie.champagne@cnrc-nrc.gc.ca Julie Champagne No Environmental Aquatic Neritic zone/Coastal water Marine Sediment Marine sediment 53.6667 -129.1333 50593188 187728 81 2 127 0 0.0 Metagenome 3300001185 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from University of Liverpool IonT_50ng_assembled University of Liverpool 3300001185 Metagenome Analysis Newbler v2.8 released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 47530 151 14 0 14 0 0.0 Metagenome 3300049330 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CC14 DOE Joint Genome Institute (JGI) 3300049330 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 90443500 221497 163 3 407 7 Unrestricted 36.27 Metagenome 7000000323 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 159490532 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000323 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 17033594 34468 0 0 0 0 0.0 Metagenome 7000000064 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 763901136 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000064 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 3823442 4918 0 0 0 0 0.0 Metagenome 3300025266 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025266 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -64.45 -64.88 240713847 423795 120 0 104 0 SRX2753843 Unrestricted 0.0 Metagenome 3300036869 *Microbiome Permanent Draft Soil microbial communities from a coastal freshwater wetland in North Carolina, United States Soil microbial communities from coastal freshwater wetland in North Carolina, United States - 3NFC DOE Joint Genome Institute (JGI) 3300036869 Metagenome Analysis metaspades v. 3.13.0 Yes Yes peraltaa@ecu.edu Ariane Peralta No Environmental Terrestrial Wetlands Soil Unclassified soil 35.8959 -76.1658 678537479 1136150 266 9 439 12 SRX8387802 Unrestricted 13.78 Metagenome 3300012493 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Unplanted soil (control) microbial communities from North Carolina - M.Soil.10.yng.090610 DOE Joint Genome Institute (JGI) 3300012493 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Environmental Terrestrial Unclassified Soil Unclassified unplanted soil 35.9076 -79.0506 101154304 274595 232 16 483 35 SRX3527518 Unrestricted 0.0 Metagenome 3300027756 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027756 Metagenome Analysis spades v. 3.11.1 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 703235189 1532965 395 52 552 94 Unrestricted 0.0 Metagenome 3300018757 *Microbiome Permanent Draft Biological soil crust microbial communities from Moab Desert, Utah to study responses to pulsed climate events Soil crust microbial communities from Colorado Plateau, Utah, USA - mid-late stage, 42 hrs after wetting v1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018757 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Sand Soil Desert Soil 38.712053 -109.695097 169234958 344929 278 15 410 24 0.0 Metagenome 3300021401 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O DOE Joint Genome Institute (JGI) 3300021401 Metagenome Analysis spades v. 3.11.1-check Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 3036548168 6647160 820 128 1541 212 SRX4023409 Unrestricted 9.11 Metagenome 3300059449 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.16W.7 SIP fraction DOE Joint Genome Institute (JGI) 3300059449 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 44591479 96908 37 4 51 7 Unrestricted 0.0 Metagenome 3300029208 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012073-44 Beijing Genomics Institute (BGI) 3300029208 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 141339411 175767 108 0 150 0 0.0 Metagenome 3300042384 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME19Jan2018-rr0852 DOE Joint Genome Institute (JGI) 3300042384 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 644133363 1016555 201 70 227 98 Unrestricted 24.16 Metagenome 3300055519 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.2W.14 SIP fraction DOE Joint Genome Institute (JGI) 3300055519 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 236049723 441223 252 31 410 44 Unrestricted 12.39 Metagenome 3300001073 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 2 DOE Joint Genome Institute (JGI) 3300001073 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 13983289 42868 98 4 206 3 SRX1983701 Unrestricted 0.0 Metagenome 3300012274 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00999 Weill Cornell Medical College 3300012274 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.59 -73.79 44039318 70554 22 0 39 0 SRX822961 0.0 Metagenome 3300036887 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 10-14 DOE Joint Genome Institute (JGI) 3300036887 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 659972926 1125268 224 7 304 24 SRX8138124 Unrestricted 15.16 Metagenome 3300029928 *Microbiome Permanent Draft Baboon gut microbial communities from fecal samples in Kenya Baboon gut microbial communities from fecal samples in Kenya - M03 Duke University 3300029928 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Baboon gut 2.717 37.1 135534183 219892 171 3 250 5 SRX834621 0.0 Metagenome 3300026112 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3734_803 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026112 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic 6.4994 -48.0 46681042 69277 49 6 40 9 SRX2753932 Unrestricted 0.0 Metagenome 2166559022 *Microbiome Permanent Draft Freshwater microbial communities from LaBonte Lake, Laramie, Wyoming, USA Fresh water microbial communities from LaBonte Lake, Laramie, Wyoming, sample from algal/cyanobacterial bloom material peak-bloom 1 DOE Joint Genome Institute (JGI) 2166559022 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes sgtringe@lbl.gov, nlward@uwyo.edu Susannah Tringe, Naomi Ward No Environmental Aquatic Lake Freshwater Algal bloom Freshwater 41.321 -105.586 147266570 365628 154 93 288 145 Unrestricted 0.0 Metagenome 3300032186 *Microbiome Permanent Draft STAs constructed wetland biome Wetland sediment microbial communities from Everglades, Florida, USA - STA64-Sample06_1 University of Florida 3300032186 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy No Yes ng.hanh24@gmail.com Hanh Nguyen No Environmental Aquatic Wetlands Freshwater Sediment sediment 26.38 -80.51 6.6-8.4 119609717 158356 44 0 57 0 0.0 Metagenome 3300060438 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210607_11_17 DOE Joint Genome Institute (JGI) 3300060438 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 423227851 681582 264 175 327 224 Unrestricted 31.68 Metagenome 3300025823 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWB_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025823 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 37.926434 -122.509186 394758681 683797 262 2 351 4 SRX7142967 Unrestricted 0.0 Metagenome 3300070487 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountains, Colorado, USA - RMNP_004-O-20170808-COMP-DNA1 Battelle Memorial Institute 3300070487 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 40.186823 -105.54091 5.15-5.58 123110262 331826 98 7 177 7 0.0 Metagenome 3300070608 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Yellowstone National Park, Wyoming, USA - YELL_051-M-20190820-COMP-DNA1 Battelle Memorial Institute 3300070608 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 44.954277 -110.541571 5.64-6.91 6909661 22962 78 9 161 13 0.0 Metagenome 3300047577 *Microbiome Permanent Draft Floating fern leaf microbial communities from various locations Floating fern leaf microbial communities from Texas, United States - Brazos_Bend_CA DOE Joint Genome Institute (JGI) 3300047577 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dave.armitage@gmail.com David Armitage No Host-associated Plants Phylloplane/Leaf Phyllosphere Endophytes Leaf 29.3775 -95.6121 77687920 83980 26 5 35 6 Unrestricted 435.31 Metagenome 3300050505 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Bulk soil microbial communities from a Populus tree surrounding site in Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4 re-annotation DOE Joint Genome Institute (JGI) 3300050505 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Environmental Terrestrial Tree plantation Soil Unclassified Bulk soil 35.8444 -83.9599 4770583816 10057030 2018 56 3702 84 SRX2843299 0.0 Metagenome 3300007819 *Microbiome Permanent Draft Permafrost core soil microbial communities from Svalbard, Norway Permafrost core soil microbial communities from Svalbard, Norway - sample 2-1-2 Soapdenovo Princeton University 3300007819 Metagenome Analysis soapdenovo1.06 released per JGI data release policy Yes Yes xue.ethan@gmail.com yaxin xue No Environmental Terrestrial Unclassified Soil Permafrost permafrost soil 78.11096 15.55294 89458274 118036 23 0 25 3 0.0 Metagenome 3300031621 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - AG5_Surface DOE Joint Genome Institute (JGI) 3300031621 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified Marine 70.5467 -122.9077 869210234 1772414 466 357 788 596 SRX5797747 Unrestricted 21.5 Metagenome 3300026828 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A5-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026828 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 33819262 105458 111 4 214 5 SRX1991252 Unrestricted 0.0 Metagenome 3300030046 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_3 DOE Joint Genome Institute (JGI) 3300030046 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 667850626 1306834 269 29 329 62 SRX5357828 Unrestricted 12.45 Metagenome 3300000032 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Petrochemical wastewater microbial community from Syncrude tailings pond, Wood Buffalo, Alberta, Canada McGill University 3300000032 Metagenome Analysis released per user request No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Lab enrichment Anaerobic media Defined media Unclassified Hydrocarbon resource environments 57.02 -111.55 377302904 749231 320 2 669 3 0.0 Metagenome 3300007284 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159490532 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007284 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 60759905 105279 40 0 93 0 0.0 Metagenome 3300011154 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00546 Weill Cornell Medical College 3300011154 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.66 -73.9 24985631 39995 15 0 23 0 SRX822513 0.0 Metagenome 3300013484 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00827 Weill Cornell Medical College 3300013484 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.99 12100668 17651 7 0 10 0 SRX822793 0.0 Metagenome 3300043393 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from California, United States - providencecreek_2019_sw_WHONDRS-S19S_0007 DOE Joint Genome Institute (JGI) 3300043393 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 37.0522 -119.1953 373582343 703166 591 117 1031 163 Unrestricted 31.3 Metagenome 2014031002 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP1 Alice Springs, Crater Hills v1 DOE Joint Genome Institute (JGI) 2014031002 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23720654 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6533633 -110.4776669 2.1 9888965 13855 0 0 0 0 Unrestricted 0.0 Metagenome 3300015086 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Storglaciaren, Tarfala, Sweden (Sample st-5c, rocky medial moraine) University of Bristol 3300015086 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.901082 18.428257 6.5 140418783 290004 111 14 198 12 0.0 Metagenome 3300024508 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 77D DOE Joint Genome Institute (JGI) 3300024508 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 210294881 477910 167 22 265 44 SRX4473705 Unrestricted 19.6 Metagenome 3300008521 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 370425937 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008521 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 94352366 127105 64 0 100 0 0.0 Metagenome 3300016713 *Microbiome Permanent Draft Viral community in wastewater in Singapore Wastewater viral communities from wet well in WWT plant in Singapore - WW_Nov16 Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016713 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Engineered WWTP Unclassified Wastewater Unclassified wastewater 1.28 103.74 32037680 54254 0 0 2 0 0.0 Metagenome 3300027516 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 34 (SPAdes) DOE Joint Genome Institute (JGI) 3300027516 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 266672271 630755 210 4 355 4 SRX4340828 Unrestricted 0.0 Metagenome 7000000640 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763982056 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000640 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 82739045 159066 0 0 0 0 0.0 Metagenome 3300027649 *Microbiome Permanent Draft Freshwater lentic microbial communities from the great Laurentian Lakes, MI, USA for biogeochemical studies Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF (SPAdes) DOE Joint Genome Institute (JGI) 3300027649 Metagenome Analysis spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified Freshwater lentic 44.701094 -82.854085 409555208 851651 322 19 451 46 SRX2577345 Unrestricted 0.0 Metagenome 2032320007 *Microbiome Permanent Draft Fungus garden microbial communities from leaf-cutting ants in Gamboa, Panama Fungus garden microbial communities from leaf-cutting ants in Gamboa, Panama - Dump bottom 454 Life Sciences, DOE Joint Genome Institute (JGI) 2032320007 Metagenome Analysis Newbler released No Yes gsuen@wisc.edu Garret Suen Yes 20885794 Environmental Terrestrial Insects nest Nest Nest dump Fungus garden 9.1167 -79.7 196100111 525993 51 0 132 0 0.0 Metagenome 3300005310 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila melanogaster male 2 gut Cornell University 3300005310 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy No Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila melanogaster male adult gut 42.875296 -77.006403 119827196 225126 6 5 10 12 0.0 Metagenome 3300039049 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample40 King Abdulaziz City for Science and Technology (KACST) 3300039049 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 27.53 34.3 66724613 138086 69 0 114 0 SRX1097608 0.0 Metagenome 3300019371 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Bagasse, Gen0, Rep 2 DOE Joint Genome Institute (JGI) 3300019371 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4148 -119.8405 287192134 449476 973 2 1472 4 SRX3962664 Unrestricted 93.25 Metagenome 3300042872 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357 NMDC pilot DOE Joint Genome Institute (JGI) 3300042872 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92029456 -106.94875775 862274732 2059733 511 9 923 22 SRX5355412 0.0 Metagenome 3300038466 *Microbiome Permanent Draft Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA Terrestrial subsurface fluid microbial community from Deep Mine Microbial Observatory in Lead, South Dakota, USA - DeMMO3 v2 Argonne National Laboratory 3300038466 Metagenome Analysis Megahit v. 1.0.6.1 Release as per PI request (GOLD-1409) SM 8.16.2021 No Yes lmmomper@gmail.com; maggie@northwestern.edu Caitlin Casar; Magdalena Osburn No Environmental Terrestrial Aquifer Deep subsurface Unclassified Terrestrial subsurface fluids 44.350833 -103.765833 7.13 295696572 353553 188 0 244 0 0.0 Metagenome 3300041991 *Microbiome Permanent Draft Sediment microbial communities from sulfidic stream in Frasassi Caves, Marche, Italy Sediment microbial communities from sulfidic stream in Frasassi Caves, Marche, Italy - PC19_104 DOE Joint Genome Institute (JGI) 3300041991 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes heidiaronson@berkeley.edu Heidi Aronson No Environmental Aquatic Groundwater Deep subsurface Cave stream sediment Sediment 43.4012 12.9656 350885108 719212 329 12 518 11 Unrestricted 14.97 Metagenome 3300049281 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA36 DOE Joint Genome Institute (JGI) 3300049281 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 234975180 565442 306 3 552 4 Unrestricted 7.66 Metagenome 3300045874 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from the Midway Geyser Basin, Yellowstone National Park, WY, United States - MSUNE_MGB_03 University of Wisconsin, Madison 3300045874 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.50889 -110.80895 130740205 217738 51 2 89 4 0.0 Metagenome 3300041488 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover leaf microbial community from Lincoln, Canterbury, New Zealand - WCL18_8 MetaG AgResearch, New Zealand, Mosgeil 3300041488 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 569766841 720700 81 221 279 364 0.0 Metagenome 3300042560 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2013-rr0656 DOE Joint Genome Institute (JGI) 3300042560 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1042026134 1623975 423 49 565 79 Unrestricted 16.01 Metagenome 3300043158 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_3 (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043158 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 602835610 1015564 136 7 245 9 SRX9140423 Unrestricted 42.26 Metagenome 3300015319 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_20JUN2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015319 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 182729190 319057 13 99 20 159 SRX3923029 Unrestricted 8.21 Metagenome 3300038843 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample06 King Abdulaziz City for Science and Technology (KACST) 3300038843 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 17.59 39.47 20200592 54481 41 0 74 0 SRX1097615 0.0 Metagenome 3300004196 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG12_big_fil_rev_8/21/14_0.65 DOE Joint Genome Institute (JGI) 3300004196 Metagenome Analysis MEGAHIT v. 0.2.0 revert back to private per Christa Yes Yes jbanfield@berkeley.edu, jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield, Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 1082144179 2771661 1755 29 3348 62 SRX3348160 Unrestricted 0.0 Metagenome 3300039356 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 560_M Beijing Genomics Institute (BGI) 3300039356 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 132445715 182396 83 0 178 0 ERX491206 0.0 Metagenome 3300027048 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C43A7_80 (SPAdes) DOE Joint Genome Institute (JGI) 3300027048 Metagenome Analysis spades v. 3.11.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 137694837 329995 181 34 272 73 SRX1990952 Unrestricted 0.0 Metagenome 3300007282 *Microbiome Permanent Draft Activated Sludge Process Metagenomes Activated sludge microbial communities from bioreactor with dissolved oxygen in CSIR-NEERI, Nagpur, India - 4ppm of oxygen, sample C Xcelris labs Ltd 3300007282 Metagenome Analysis covaris released per JGI data release policy No Yes neetijadeja@hotmail.com Niti B Jadeja, Niti Jadeja No Engineered Wastewater Unclassified Activated Sludge Unclassified aeration tank of activated sludge process 21.1458004 79.0881546 79695739 202042 43 1 83 3 0.0 Metagenome 3300027915 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027915 Metagenome Analysis spades v. 3.11.1 Yes Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment watersheds 41.5935 -78.5142 3075037314 9098619 1963 152 3672 264 SRX2839553 Unrestricted 0.0 Metagenome 3300003187 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB DOE Joint Genome Institute (JGI) 3300003187 Metagenome Analysis Yes Yes dangl@email.unc.edu, dangl@email.unc.edu; NNIvanova@lbl.gov Jeff Dangl, Jeff Dangl; Natalia Ivanova No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.9082 -79.0499 406377543 701288 171 0 311 0 SRX3332972 Unrestricted 0.0 Metagenome 3300008279 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 338793263 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008279 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 109429299 183895 55 0 109 0 0.0 Metagenome 3300044953 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Towuti Lake, South Sulawesi, Indonesia - Towuti_50m_2014 DOE Joint Genome Institute (JGI) 3300044953 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.7 121.4 484117597 936268 297 33 458 46 Unrestricted 36.24 Metagenome 3300014728 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01209 Weill Cornell Medical College 3300014728 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.85 -73.9 28030341 34947 10 0 16 0 SRX823164 0.0 Metagenome 3300069491 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_034-O-20160811-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069491 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 17660976 62506 83 10 181 17 0.0 Metagenome 3300056809 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - APS1_3C_TP2_16O DOE Joint Genome Institute (JGI) 3300056809 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 2217162843 3004193 745 131 886 174 Unrestricted 25.1 Metagenome 3300027968 *Microbiome Permanent Draft Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027968 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade Yes 30397342 Environmental Terrestrial Unclassified Soil Unclassified Surface soil 40.7999 -76.3402 727656977 1195063 469 28 706 57 SRX2837987 Unrestricted 0.0 Metagenome 3300044741 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - CSC4S DOE Joint Genome Institute (JGI) 3300044741 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 1309713397 2248403 491 20 876 33 Unrestricted 15.23 Metagenome 3300001738 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP-118 DOE Joint Genome Institute (JGI) 3300001738 Metagenome Analysis Yes Yes mbsulli@gmail.com, sacinas@icm.csic.es; mbsulli@gmail.com Matthew Sullivan, Silvia G. Acinas; Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 11.9811 -108.0335 100796859 218297 98 2 182 3 SRX4915168 Unrestricted 0.0 Metagenome 3300012086 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ033 MetaG DOE Joint Genome Institute (JGI) 3300012086 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.7124 -74.5643 298660229 471094 153 25 215 57 SRX3539468 Unrestricted 0.0 Metagenome 3300011152 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00573 Weill Cornell Medical College 3300011152 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.69 -73.98 20328625 36383 9 0 15 0 SRX822540 0.0 Metagenome 3300013482 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00267 Weill Cornell Medical College 3300013482 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.75 -73.97 13768687 14046 5 0 10 0 SRX822240 0.0 Metagenome 2014031004 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP9 Dragon Spring, Norris Geyser Basin v1 DOE Joint Genome Institute (JGI) 2014031004 Metagenome Analysis lucy / pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23755042 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.7318889 -110.7110833 3.1 18602353 27451 0 0 0 0 Unrestricted 0.0 Metagenome 3300007151 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Dobu ""control"", cg6adc" University of New South Wales 3300007151 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Cinachyra sp. (marine sponge) -9.752083 150.854133 152658051 361403 71 5 138 8 0.0 Metagenome 3300030518 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_2 DOE Joint Genome Institute (JGI) 3300030518 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 1284680439 2313197 519 39 728 61 SRX5356902 Unrestricted 12.95 Metagenome 3300012558 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100742 University of Pennsylvania 3300012558 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12213993 25110 10 2 23 5 SRX756108 0.0 Metagenome 3300002310 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP02-I4 3300002310 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300013160 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100277 University of Pennsylvania 3300013160 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 25651931 53704 15 1 19 0 SRX756624 0.0 Metagenome 3300036377 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T25 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036377 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 114072193 221993 166 0 295 0 SRX4415304, SRX7705520 Unrestricted 0.0 Metagenome 3300045872 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from the Sylvan Springs Area, Yellowstone National Park, WY, United States - MSUNE_S_03 University of Wisconsin, Madison 3300045872 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.69956 -110.76673 106099678 227300 42 8 105 23 0.0 Metagenome 3300021513 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-11-0-1_MG DOE Joint Genome Institute (JGI) 3300021513 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.0118 -110.5962 332012557 697199 365 4 542 5 SRX3982217 Unrestricted 20.34 Metagenome 3300030359 *Microbiome Permanent Draft Broiler chicken associated microbial communities from animal house in Bologna, Italy Broiler chicken cecum microbial communities from animal house in Bologna, Italy - XT16; Group C Food safety laboratory 3300030359 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Birds Large intestine Digestive system Ceca Broiler chicken cecum 44.3027 11.21504 14644178 26421 40 0 88 0 ERX1378674 0.0 Metagenome 3300042874 *Microbiome Permanent Draft Sediment microbial communities from sulfidic stream in Frasassi Caves, Marche, Italy Sediment microbial communities from sulfidic stream in Frasassi Caves, Marche, Italy - PC19_101 DOE Joint Genome Institute (JGI) 3300042874 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes heidiaronson@berkeley.edu Heidi Aronson No Environmental Aquatic Groundwater Deep subsurface Cave stream sediment Sediment 43.4012 12.9656 1719961273 2637649 718 4 1146 7 Unrestricted 17.26 Metagenome 3300045560 *Microbiome Draft Lake microbial communities from Canada Lake sediment microbial communities from the Boreal Plains ecozone, Canada - Lake 09-608 Genome Quebec 3300045560 Metagenome Analysis MEGAHIT v1.0.6 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Lake Sediment 56.240918 -117.734668 355765622 485442 149 18 227 31 0.0 Metagenome 3300012319 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100508 University of Pennsylvania 3300012319 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 15465960 34353 29 6 63 12 SRX756246 0.0 Metagenome 3300003169 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from above oceans and continental USA - SDPR-003 DOE Joint Genome Institute (JGI) 3300003169 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 3075406 9808 15 26 15 38 Unrestricted 0.0 Metagenome 3300001339 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring and microbial mat streamer communities from Octopus Spring Streamers, Yellowstone National Park, USA - OCT_B DOE Joint Genome Institute (JGI) 3300001339 Metagenome Analysis Yes Yes binskeep@montana.edu, binskeep@montana.edu; jim.fredrickson@pnnl.gov William Inskeep, William P. Inskeep; Jim Fredrickson Yes 26140529 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring and microbial mat streamer 44.376 -110.69 8.6 104542566 251552 61 1 58 2 SRX2553561 Unrestricted 0.0 Metagenome 3300050226 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Warrenville, Illinois, USA - 68_711_IL_DR_1m_c2_T1_18O DOE Joint Genome Institute (JGI) 3300050226 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 41.84145 -88.2298 1026143141 1593909 294 7 469 12 Restricted 12.87 Metagenome 3300026241 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from above oceans and continental USA - SDPR-003 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026241 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 16832780 44914 23 46 42 104 Unrestricted 0.0 Metagenome 3300035637 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_1_13_6 mgh University of Alberta 3300035637 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 89877695 113238 43 0 61 0 0.0 Metagenome 7000000404 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158499257 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000404 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 103832853 207088 0 0 0 0 0.0 Metagenome 3300059735 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1556A-3 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059735 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2022 -123.941 100091586 246046 190 93 361 132 SRX2753741 Unrestricted 0.0 Metagenome 3300043419 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Umpqua River, Elkton, Oregon, USA - umpqua_2019_sw_WHONDRS-S19S_0079 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043419 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 43.6367 -123.5719 721911917 1085344 257 60 341 104 Unrestricted 24.5 Metagenome 3300048564 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Woodchip biofilm microbial communities from lab scale WBR in Cornell University, Ithaca, NY, USA - rep3_cs_p2_w6 DOE Joint Genome Institute (JGI) 3300048564 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 1046711208 2092146 567 47 930 73 Unrestricted 9.47 Metagenome 3300009140 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T8 (2) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2) Shell Corporation 3300009140 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 106723596 358755 123 0 261 0 0.0 Metagenome 3300003091 *Microbiome Permanent Draft Hot spring microbial communities from Five Geothermal Springs in Yellowstone National Park, USA Hot spring microbial communities from Five Geothermal Springs in Yellowstone National Park, USA - Norris Geyser Basin, Beowulf Spring J. Craig Venter Institute 3300003091 Metagenome Analysis Made public because these are downloaded from Genbank No Yes Rusch, D No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.7315 -110.711361 3 3611415 5361 2 0 3 0 0.0 Metagenome 3300024336 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_135_MG DOE Joint Genome Institute (JGI) 3300024336 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca; shallam@interchange.ubc.ca Sean Crowe; Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5847 -123.5008 460184892 838187 327 7 461 13 SRX4496486 Unrestricted 52.2 Metagenome 7000000062 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human subgingival plaque microbial communities from NIH, USA - visit 2, subject 764042746 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000062 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human 39.0042816 -77.1012173 69890809 130503 0 0 0 0 0.0 Metagenome 3300037209 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 711 E-1-M DOE Joint Genome Institute (JGI) 3300037209 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 501760723 1173026 433 3 729 10 SRX8146441 Unrestricted 6.81 Metagenome 3300033400 *Microbiome Permanent Draft Metagenomic SGS 2x251 Riparian soil bacterial communities from Cottonwood Creek Park, Encinitas, CA, USA - R2 Illumina 3300033400 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Riparian soil Soil 33.051604 -117.289363 1301712869 3653301 723 41 1220 68 0.0 Metagenome 3300043605 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 069-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043605 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9272 -106.9794 505916029 1381965 616 40 1139 65 Unrestricted 7.88 Metagenome 3300012272 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #562 DOE Joint Genome Institute (JGI) 3300012272 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 317629528 605844 127 41 179 84 SRX3242023 Unrestricted 0.0 Metagenome 3300015274 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_22AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015274 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 102360222 196775 22 37 32 43 SRX3926783 Unrestricted 9.3 Metagenome 3300019881 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - U3c2 DOE Joint Genome Institute (JGI) 3300019881 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9206 -106.9514 370008527 755074 217 15 398 18 SRX3944459, SRX3944460 Unrestricted 0.0 Metagenome 3300042382 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME22Oct2015-rr0844 DOE Joint Genome Institute (JGI) 3300042382 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 570902539 871325 271 112 357 134 Unrestricted 20.46 Metagenome 3300056661 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.20C.10 SIP fraction DOE Joint Genome Institute (JGI) 3300056661 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 145194489 281869 176 52 303 76 Unrestricted 9.65 Metagenome 3300035186 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D1103S02 DOE Joint Genome Institute (JGI) 3300035186 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0387 1188815006 2677613 924 19 1634 38 SRX8255816 Unrestricted 7.57 Metagenome 3300030437 *Microbiome Permanent Draft Serpentinized rock microbial communities from various locations Mediterranean forest soil microbial communities from Voltri Massif, Liguria, Italy - LIG_BR2_2012 Marine Biological Laboratory 3300030437 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Temperate forest Soil Bulk soil Mediterranean forest soil 44.597 8.7833 35818670 70767 50 0 80 0 SRX1055081 0.0 Metagenome 3300022823 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant dump, University of Wisconsin, Madison, United States - 2B150A (version 2) DOE Joint Genome Institute (JGI) 3300022823 Metagenome Analysis spades v. 3.11.1 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0758 -89.4125 75083190 101777 46 1 66 0 SRX4821867 Unrestricted 0.0 Metagenome 3300026114 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_A_H2O_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026114 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Pond water 37.4958 -122.1331 259273896 500937 136 3 196 3 SRX10967259 Unrestricted 0.0 Metagenome 3300007076 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 DOE Joint Genome Institute (JGI) 3300007076 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Host-associated Plants Rhizosphere Roots Soil Populus rhizosphere 35.8444 -83.9599 5159863758 15330406 2532 73 4568 151 SRX2923913 Unrestricted 0.0 Metagenome 3300000213 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_F_10_SI03_150 DOE Joint Genome Institute (JGI) 3300000213 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Oceanic Marine Photic zone Marine 48.35 -123.3 139108472 268237 140 3 251 4 Unrestricted 0.0 Metagenome 2166559024 *Microbiome Draft Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA - Biofuel metagenome 3 version 1 (version 2) DOE Joint Genome Institute (JGI) 2166559024 Metagenome Analysis released based on JGI ITS No Yes hrbeller@lbl.gov Harry Beller Yes 29556105 Engineered Bioreactor Unclassified Anaerobic Unclassified Bioreactor 37.8754404 -122.2477251 144010113 273185 46 0 212 2 Unrestricted 0.0 Metagenome 3300021061 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_5-13C DOE Joint Genome Institute (JGI) 3300021061 Metagenome Analysis spades v. 3.10.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.3049 -116.2547 266934236 639860 258 8 393 16 SRX3936779 Unrestricted 22.35 Metagenome 3300005957 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Hot Lake, Washington, USA - Section #3 (SPADES assembly) (version 2) DOE Joint Genome Institute (JGI) 3300005957 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, jim.fredrickson@pnnl.gov Natasha Ivanova, Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.973481 -119.476345 104626284 166338 160 10 226 29 SRX3311902 Unrestricted 0.0 Metagenome 3300005665 *Microbiome Permanent Draft Alkane-degrading methanogenic microbial community from enrichment Alkane-degrading methanogenic microbial communities from enrichment of sediment from a hydrocarbon-contaminated ditch in Bremen, Germany University of California, San Diego 3300005665 Metagenome Analysis SPAdes released per JGI data release policy No Yes ddgalzerani@eng.ucsd.edu Daniela Galzerani No Engineered Lab enrichment Anaerobic media Defined media Unclassified Sediment 53.079854 8.806667 50624176 74331 40 0 43 1 0.0 Metagenome 7000000656 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764042746 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000656 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 43776434 85864 0 0 0 0 0.0 Metagenome 3300010334 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2) (version 2) DOE Joint Genome Institute (JGI) 3300010334 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 46.8319 -72.5 1330663387 2580263 759 263 1181 422 SRX2955014 Unrestricted 0.0 Metagenome 3300048089 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere DOE Joint Genome Institute (JGI) 3300048089 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1209 -123.2714 661090446 1119887 271 108 435 120 Unrestricted 15.35 Metagenome 3300008965 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada T0 (1) T34 (live) enrichments of Methanogenic microbial communities using Athabascan oil sands DE NOVO (2) Shell Corporation 3300008965 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 57.02 -111.65 69112995 253241 80 1 153 0 0.0 Metagenome 3300014583 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 598_B Beijing Genomics Institute (BGI) 3300014583 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 15046426 20095 7 2 17 3 ERX491257 0.0 Metagenome 3300026937 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026937 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 20532918 68628 88 1 145 5 SRX1990535 Unrestricted 0.0 Metagenome 3300008657 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 1, subject 338793263 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008657 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 34630668 47266 23 6 36 11 SRX024104, SRX101407 0.0 Metagenome 3300002386 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 16NOV2012 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002386 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 35740672 89197 86 8 162 18 SRX1989932 Unrestricted 0.0 Metagenome 7000000348 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 160582958 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000348 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 116563837 170070 0 0 0 0 0.0 Metagenome 3300005618 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 DOE Joint Genome Institute (JGI) 3300005618 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 6068946526 17274790 4011 424 6666 844 SRX2790799 Unrestricted 0.0 Metagenome 3300012010 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M University of Tennessee 3300012010 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 357969791 839526 99 0 222 7 SRX710615 0.0 Metagenome 3300029751 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011698-46 Beijing Genomics Institute (BGI) 3300029751 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 132904374 191221 127 0 227 1 0.0 Metagenome 3300030050 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E2_4 DOE Joint Genome Institute (JGI) 3300030050 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 300322234 790643 263 23 426 41 SRX5356655 Unrestricted 8.49 Metagenome 3300029324 *Microbiome Permanent Draft Human fecal microbial communities from healthy and liver cirrhosis patients in Hangzhou, China Human fecal microbial communities from healthy subjects in Hangzhou, China - HD-49_Run5 Zhejiang University 3300029324 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 30.0 120.0 118312419 173685 117 0 168 0 0.0 Metagenome 3300029063 *Microbiome Permanent Draft Utah desert microbiome from environmental samples near Hanksville, Utah, USA Rock biofilm microbial communities from Utah desert near Hanksville, Utah, USA - E33_004 McGill University 3300029063 Metagenome Analysis canu v. 1.7 released by Catherine Maggiori No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Terrestrial Unclassified Soil Desert Rock biofilm 38.41714146 -110.78530232 52849772 93156 68 0 105 0 0.0 Metagenome 3300000418 *Microbiome Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine microbial community from Union City, CA, USA - Pond 2C Liquid 1 DOE Joint Genome Institute (JGI) 3300000418 Metagenome Analysis released based on JGI ITS Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Enviromental 37.569167 -122.1019 194495031 424469 245 55 427 93 Unrestricted 0.0 Metagenome 3300002019 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot1-3 3300002019 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 13365584 75325 132 2 284 9 0.0 Metagenome 3300042988 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Arikaree River, Idalia, Colorado, USA - arikareeriver_2019_sw_WHONDRS-S19S_0023 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300042988 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 39.7585 -102.4491 410874304 748186 241 39 378 62 Unrestricted 34.27 Metagenome 3300015298 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_09MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015298 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 149196957 273045 2 20 4 19 SRX3921987 Unrestricted 10.63 Metagenome 3300025848 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025848 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 549682295 1302404 299 87 477 160 SRX2856845 Unrestricted 0.0 Metagenome 3300011883 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metalplastic -P00935 Weill Cornell Medical College 3300011883 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface City subway metal/plastic 40.76 -73.92 45529011 76395 21 0 33 0 SRX822898 0.0 Metagenome 3300048067 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_180221.NP2 DOE Joint Genome Institute (JGI) 3300048067 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 765861424 1617945 507 60 783 105 Unrestricted 13.83 Metagenome 3300013391 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR13_S1_MetaG DOE Joint Genome Institute (JGI) 3300013391 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 61.2418 21.4803 89845296 187068 93 1 117 0 SRX3604013 Unrestricted 135.42 Metagenome 3300040115 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - NIWO_002-O-20160830-COMP-DNA1 Battelle Memorial Institute 3300040115 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.05425 -105.58237 12107228 36288 29 8 69 15 0.0 Metagenome 3300014020 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00940 Weill Cornell Medical College 3300014020 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.69 -73.91 26037563 40240 18 0 22 0 SRX822903 0.0 Metagenome 3300043632 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 296-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043632 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9784 -107.0395 825329665 1887251 445 23 786 55 Unrestricted 7.07 Metagenome 3300026843 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgHAA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026843 Metagenome Analysis spades v. 3.11.1 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 40932708 132054 146 4 225 10 SRX2521239 Unrestricted 0.0 Metagenome 3300069382 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_043-M-20160815-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069382 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 16287931 58798 45 2 113 8 0.0 Metagenome 3300070300 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_002-M-20171110-COMP-DNA1 3300070300 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 58426126 169792 98 4 228 4 0.0 Metagenome 3300005876 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_401 DOE Joint Genome Institute (JGI) 3300005876 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 259227836 889305 384 3 771 8 SRX2564941, SRX2581051 Unrestricted 0.0 Metagenome 3300027740 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214 HiSeq DOE Joint Genome Institute (JGI) 3300027740 Metagenome Analysis spades v. 3.11.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9888 -108.3994 652186548 1377115 554 12 914 13 SRX7077523, SRX7077524 Unrestricted 0.0 Metagenome 3300035110 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 26_4.5_M_2 DOE Joint Genome Institute (JGI) 3300035110 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1866 -2.2146 1213670284 2633751 669 57 1154 80 SRX8234983 Unrestricted 8.02 Metagenome 3300027362 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027362 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8895 -106.9086 78743508 187075 109 4 212 8 SRX2754309 Unrestricted 0.0 Metagenome 3300037722 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVTP2_070717_105_125_jgi DOE Joint Genome Institute (JGI) 3300037722 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2458238122 3690639 972 13 1575 16 SRX9162487 Unrestricted 16.19 Metagenome 3300046711 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-P1(1) 1-5 DOE Joint Genome Institute (JGI) 3300046711 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.355 19.0438 780713097 1249824 166 29 298 38 Restricted 12.14 Metagenome 3300016474 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water catchment in Singapore - WC_Site 1b, Aug Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016474 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 1.35 103.87 118217009 155207 21 12 30 15 0.0 Metagenome 3300004029 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Bullhead_CordB_D2 DOE Joint Genome Institute (JGI) 3300004029 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.003361 -122.468277 972333932 2960211 915 16 1971 19 SRX7142158 Unrestricted 0.0 Metagenome 3300056626 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Activated sludge microbial communities from bioreactor in WWTP, Madison, WI, USA - RS_2021-10-20_SampleA DOE Joint Genome Institute (JGI) 3300056626 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.03331 -89.35633 1336682618 1205359 357 49 369 44 Unrestricted 11.7 Metagenome 3300045109 *Microbiome Permanent Draft Soil microbial communities from Blodgett Forest Research Station, California, USA Soil microbial communities from Blodgett Forest Research Station, California, USA - BWE201406033H1020_TS DOE Joint Genome Institute (JGI) 3300045109 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.912 -120.6612 621597111 1085422 241 22 436 38 Unrestricted 15.0 Metagenome 3300018012 *Microbiome Permanent Draft Coastal wetland sediment microbial communities from the Mid-Atlantic and Southeast Atlantic Coast of USA, responding to salinity intrusion. Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5 DOE Joint Genome Institute (JGI) 3300018012 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Freshwater sediment 35.9061 -76.1569 808469327 1751514 492 12 843 17 SRX4367387 Unrestricted 5.47 Metagenome 3300040168 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Treehaven, Great Lakes, WI, USA - TREE_001-O-20170707-COMP-DNA1 Battelle Memorial Institute 3300040168 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.49369 -89.58571 8502951 26779 121 7 209 16 0.0 Metagenome 3300003500 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_100m_DNA DOE Joint Genome Institute (JGI) 3300003500 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 176601155 385970 221 16 347 32 Unrestricted 0.0 Metagenome 3300001030 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN351 DOE Joint Genome Institute (JGI) 3300001030 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 245643 832 22 0 26 2 SRX3311800 Unrestricted 0.0 Metagenome 3300059702 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.753 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059702 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 170127123 399895 184 30 325 61 SRX2753573 Unrestricted 0.0 Metagenome 3300029511 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005376-42 Beijing Genomics Institute (BGI) 3300029511 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 139124327 180800 115 0 152 0 0.0 Metagenome 3300050261 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_13 DOE Joint Genome Institute (JGI) 3300050261 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -76.901 160.91 303044100 462957 45 9 69 15 SRX18235893 Restricted 42.71 Metagenome 3300049638 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MG_240817 DOE Joint Genome Institute (JGI) 3300049638 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 679994292 1106307 866 2 1171 4 Unrestricted 24.09 Metagenome 3300026006 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_302 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026006 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 31066178 93709 100 2 206 6 SRX2564942, SRX2581050 Unrestricted 0.0 Metagenome 3300042898 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME13Jun2011-rr0982 DOE Joint Genome Institute (JGI) 3300042898 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1315619944 2019441 362 69 461 83 Unrestricted 26.69 Metagenome 3300049373 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MC13 DOE Joint Genome Institute (JGI) 3300049373 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 26306376 70629 135 5 266 7 Unrestricted 29.18 Metagenome 3300025441 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_4_100 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025441 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 204041937 371231 117 0 182 1 SRX3002039 Unrestricted 0.0 Metagenome 3300034976 *Microbiome Finished Coastal sediment microbial communities from Western Antarctica Coastal sediment microbial communities from Western Antarctica - 10_event64 Megahit 64 Michigan State University 3300034976 Metagenome Analysis Megahit v. 1.1 released by Deric Learman No Yes deric.learman@cmich.edu Deric Learman No Environmental Aquatic Coastal Marine Sediment marine sediment -73.1582 -129.2692 174410265 386277 122 35 294 50 0.0 Metagenome 3300022697 *Microbiome Permanent Draft Deep Sea Chimney Vent Samples 2015 - Flores Lab Hydrothermal vent microbial communities from dead black smoker in Mariner Vent Field, Eastern Lau Spreading Center, Pacific Ocean - O University of California, Irvine 3300022697 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent 22.180198 176.601109 169004004 185880 43 1 54 0 0.0 Metagenome 3300011993 *Microbiome Permanent Draft Terrestrial microbial communites from a soil warming plot in Okalahoma, USA Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C1.rep1 Georgia Institute of Technology 3300011993 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial 34.975667 -97.519 146772501 489188 62 2 148 11 SRX352024 0.0 Metagenome 3300025579 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 210-2 deep-072012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025579 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 297755502 601494 106 3 178 3 SRX1987240 Unrestricted 0.0 Metagenome 2043231003 *Microbiome Permanent Draft Marine microbial communities from the Landsort deep, Baltic Sea Sediment 1 Soedertoern University 2043231003 Metagenome Analysis Newbler released per JGI data release policy No Yes petter.thureborn@sh.se Petter Thureborn No Environmental Aquatic Oceanic Marine Unclassified Marine 58.58333333 18.23333333 39942571 96188 50 0 91 0 0.0 Metagenome 3300022901 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4 DOE Joint Genome Institute (JGI) 3300022901 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 294697082 778256 504 30 941 53 SRX4801282 Unrestricted 7.57 Metagenome 3300006613 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS891_Anemone_DNA 3300006613 Metagenome Analysis CLC genomics wb7 released by Caroline Fortunato No Yes cfortunato@mbl.edu, cfortunato@gmail.com; randerson@carleton.edu; elks@mit.edu Caroline Fortunato, Caroline Fortunato; Rika Anderson; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933231 -130.013645 378883382 948037 228 22 524 58 0.0 Metagenome 3300000537 *Microbiome Draft Soil microbial communities from the Kellog Biological Station, Michigan, US, in response to alternate cropping systems Switchgrass Nitrogen 408 pre-fert 2011 DOE Joint Genome Institute (JGI) 3300000537 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes tschmidt@msu.edu Thomas Schmidt, Thomas M. Schmidt No Environmental Terrestrial Unclassified Soil Agricultural land Soil 42.405849 -85.384504 14437173 43667 198 17 377 17 Unrestricted 0.0 Metagenome 3300028377 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E6 #833 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028377 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 213500597 418978 269 18 445 20 SRX2526863 Unrestricted 0.0 Metagenome 3300022221 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_8_1 DOE Joint Genome Institute (JGI) 3300022221 Metagenome Analysis spades v. 3.11.1-check Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Sediment Marine Unclassified sediment 38.03 -122.15 1043071144 2151483 871 42 1458 68 SRX4053753 Unrestricted 9.63 Metagenome 3300048833 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Sediment microbial communities from brackish wetlands in San Jose, California, USA - ROC1_1 DOE Joint Genome Institute (JGI) 3300048833 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Intertidal zone Marine Salt marsh sediment Sediment 37.427598 -121.938678 1398147135 2037285 355 70 443 86 Unrestricted 28.1 Metagenome 3300047286 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Hudson River, NewYork, USA - NASQAN2015_150 DOE Joint Genome Institute (JGI) 3300047286 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 41.7216 -73.9411 171976377 397729 167 30 288 39 Unrestricted 33.73 Metagenome 3300006342 *Microbiome Permanent Draft Recovery of genomes from the rare biosphere of anaerobic digesters Microbial communities enriched from an anaerobic digester in Shek Wu Hui, Hong Kong - Year 2 enrichment University of Hong Kong 3300006342 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes patrick.lee@cityu.edu.hk Patrick Lee No Engineered Lab enrichment Anaerobic media Defined media Unclassified Sludge 22.2783 114.1747 3460436 2973 1 0 1 0 0.0 Metagenome 3300007863 *Microbiome Permanent Draft Microbial communities from Columbia River Estuary, Oregon, USA Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459B_0.2um Oregon State University 3300007863 Metagenome Analysis megahit released per JGI data release policy Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Coastal Marine Unclassified estuary water 46.2335 -123.9142 304884551 617925 300 109 480 202 0.0 Metagenome 3300042190 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A12 University of California, Davis 3300042190 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 111679269 330531 214 1 404 10 0.0 Metagenome 7000000725 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000725 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 4371818 8861 0 0 0 0 0.0 Metagenome 3300028211 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS376 with 3.0UM filter - spades JGI facility at Oak Ridge National Laboratory 3300028211 Metagenome Analysis Spades v. 3.11.1 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 17868967 30879 5 1 12 4 0.0 Metagenome 3300057213 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - LE-21 DOE Joint Genome Institute (JGI) 3300057213 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.827 -83.193 656337029 1309625 336 39 541 64 Unrestricted 29.73 Metagenome 3300070979 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lenoir Landing, Alabama, USA - LENO_002-M-20160829-COMP-DNA1 3300070979 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 28959 103 2 0 1 0 0.0 Metagenome 3300047308 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lena River, Sakha Republic, Russia - Lena 2005-5 DOE Joint Genome Institute (JGI) 3300047308 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 66.7666 123.3666 356936356 774757 354 96 607 144 Unrestricted 19.12 Metagenome 3300044947 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 418-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044947 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9769 -107.0664 537576972 1321449 496 22 875 37 Unrestricted 7.68 Metagenome 3300001443 *Microbiome Permanent Draft Permafrost soil microbial communities from Miers Valley, Antarctica Permafrost soil microbial communities from Miers Valley, Antarctica - Ant2 3300001443 Metagenome Analysis released by JGI data releasing policy No Yes kirill.krivushin@utoronto.ca Kirill Krivushin No Environmental Terrestrial Unclassified Soil Permafrost Permafrost soil -78.099535 163.850256 17410014 46236 14 0 26 0 0.0 Metagenome 3300023439 *Microbiome Permanent Draft Hydrothermal Fe-rich Mat Reference Genomes Hydrothermal Fe-rich mat microbial community from TAG Site, Mid-Atlantic Ridge, Atlantic Ocean - 665-MMA12 University of Delaware 3300023439 Metagenome Analysis metaSPAdes v. 3.10.0 Metagenomes associated with bioRxiv doi:10.1101/722066 Yes Yes mcallis@uw.edu Sean McAllister No Environmental Aquatic Hydrothermal vents Marine Microbial mats Hydrothermal Fe-rich mat 26.137196 -44.826442 160924757 261775 138 9 186 8 0.0 Metagenome 3300055011 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_160316.NP2 DOE Joint Genome Institute (JGI) 3300055011 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 673923845 1446249 462 44 690 98 Restricted 0.0 Metagenome 7000000239 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 763496533 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000239 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 174891667 285198 0 0 0 0 0.0 Metagenome 3300053674 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Biomass microbial communities from acid-phase anaerobic digester in WWTP, Madison, WI, USA - 20211006_SampleB DOE Joint Genome Institute (JGI) 3300053674 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Sludge Anaerobic digester Unclassified Biomass 43.03331 -89.35633 894728931 1526533 558 7 945 19 Unrestricted 38.71 Metagenome 3300027230 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1551A-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027230 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.187 -123.8837 60983945 140599 181 60 276 99 SRX2753727 Unrestricted 31.18 Metagenome 3300007226 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila melanogaster male 4 gut Cornell University 3300007226 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy Yes Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila melanogaster male adult gut 42.875296 -77.006403 463826872 477619 3 4 7 19 0.0 Metagenome 3300039913 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 099_R1_022417 University of Maryland 3300039913 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.70230556 27.09966667 22191182 49018 65 1 111 2 0.0 Metagenome 3300028144 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_28AUG2017_LD1 DOE Joint Genome Institute (JGI) 3300028144 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 72653203 139511 29 53 35 70 SRX5345912 Unrestricted 19.57 Metagenome 3300038857 *Microbiome Permanent Draft Freshwater sediment microbial communities from Chandeleur Islands, USA Subtidal sediment core microbial communities from Chandeleur Islands, USA - ASubC3 University of Alabama 3300038857 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Wetlands Freshwater Sediment Subtidal sediment core 29.862806 -88.841194 11797242 40641 38 3 73 5 0.0 Metagenome 3300013426 *Microbiome Permanent Draft Baboon gut microbial communities from fecal samples in Kenya Baboon gut microbial communities from fecal samples in Kenya - M09 Duke University 3300013426 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Baboon gut 2.717 37.1 125838713 260245 83 6 180 10 SRX834633 0.0 Metagenome 3300034114 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Sediment microbial communities from East River floodplain, Colorado, United States - 9_s17 DOE Joint Genome Institute (JGI) 3300034114 Metagenome Analysis metaspades v. 3.13.0 Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Aquatic Sediment Floodplain Unclassified sediment 38.9229 -106.9499 363671413 1049447 471 12 818 18 SRX7631464 Unrestricted 6.53 Metagenome 3300012022 *Microbiome Permanent Draft Terrestrial microbial communites from a soil warming plot in Okalahoma, USA Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6 Georgia Institute of Technology 3300012022 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial 34.975667 -97.519 595837332 1946541 149 11 426 26 SRX352031 0.0 Metagenome 3300015363 *Microbiome Permanent Draft Danish lakes Microbial communities Depth profiles Lake Almind and Hund Sediment microbial communities from Lake Hund, Silkeborg, Region Midtjylland, Denmark - HUS_14.08.12_sediment_0-5cm metaSPAdes assemblies Odense University Hospital 3300015363 Metagenome Analysis metaSPAdes 3.7.1 released by JGI data releasing policy Yes Yes atreusch@biology.sdu.dk Alexander Treusch No Environmental Aquatic Lake Freshwater Sediment Sediment 56.04 9.54 16939984 68455 29 0 65 4 0.0 Metagenome 3300007906 *Microbiome Permanent Draft Anaerobic oil degrading microbial communities from River Tyne estuarine sediment Microbial communities from sediment of the River Tyne Estuary, UK - Live_176d_1 University of Liverpool 3300007906 Metagenome Analysis IDBA-DB released per JGI data release policy No Yes ana.suarez-suarez@ncl.ac.uk Ana Su?rez-Su?rez, Ana Suarez-Suarez No Environmental Aquatic Unclassified Sediment Unclassified sediment 54.9632021 -1.6348029 150403350 305439 85 3 171 7 0.0 Metagenome 3300015024 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic sediment microbial communities from supraglacial cryoconite, Rabots glacier, Tarfala, Sweden (Sample Rb cryoconite) University of Bristol 3300015024 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.910855 18.470863 5.7 429543524 686675 169 16 249 29 0.0 Metagenome 3300037434 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_C1 DOE Joint Genome Institute (JGI) 3300037434 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 536768822 1130052 241 36 389 60 SRX9146920 Unrestricted 7.36 Metagenome 3300027381 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027381 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 213665818 522450 228 63 418 90 SRX2021672, SRX1985376, SRX1985375 Unrestricted 0.0 Metagenome 3300070413 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lajas Experimental Station, Puerto Rico, USA - LAJA_001-M-20160920-COMP-DNA1 3300070413 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 1466328 6074 14 0 32 0 0.0 Metagenome 3300012651 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100672 University of Pennsylvania 3300012651 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 30020413 67555 19 0 29 0 SRX756422 0.0 Metagenome 3300056755 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.3W.12 SIP fraction DOE Joint Genome Institute (JGI) 3300056755 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 95941812 159036 73 7 88 10 Unrestricted 14.71 Metagenome 3300042326 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME01Aug2014-rr0728 DOE Joint Genome Institute (JGI) 3300042326 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 653268050 1081551 314 55 457 65 Unrestricted 14.47 Metagenome 3300069361 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_027-M-20170624-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069361 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 11524654 37047 60 12 96 11 0.0 Metagenome 3300018020 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100 DOE Joint Genome Institute (JGI) 3300018020 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 892402364 1618937 518 2 906 9 SRX3960075 Unrestricted 14.93 Metagenome 3300050151 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D10_RHK1_5_to_RHK1 DOE Joint Genome Institute (JGI) 3300050151 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.154 -124.211 437295962 754851 300 73 471 121 Unrestricted 19.36 Metagenome 3300071092 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt-Chequamegon, Wisconsin, USA - STEI_047-M-20170706-COMP-DNA1 3300071092 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 3527362 11308 35 5 67 9 0.0 Metagenome 3300036813 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5CB15 DOE Joint Genome Institute (JGI) 3300036813 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 277868758 732369 476 36 801 50 SRX8379341 Unrestricted 5.49 Metagenome 3300014012 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00975 Weill Cornell Medical College 3300014012 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.63 -73.82 19954813 31833 15 2 16 1 SRX822937 0.0 Metagenome 3300032124 *Microbiome Permanent Draft Laboratory enriched soil microbial communities from Surat, India Laboratory enriched soil microbial communities from Surat, India - NST_M SARDAR PATEL UNIVERSITY 3300032124 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes ndneelam13@gmail.com Neelam Devpura No Engineered Lab enrichment Unclassified Defined media Unclassified Laboratory enriched soil 21.29345 72.7675 12356944 14444 7 0 15 0 0.0 Metagenome 3300025140 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - groundupSSSS metaG (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025140 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca Ramunas Stepanauskas; Peter Dunfield No Environmental Aquatic Ice Freshwater Glacier Glacier valley 81.017 -81.583 616129211 1024020 361 16 502 36 SRX3006942 Unrestricted 0.0 Metagenome 3300043003 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver proximal colon microbial communities from Maple Ridge, British Columbia, Canada - Beaver1Prox.Colon1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043003 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Proximal colon proximal colon 49.18 -122.54 118870244 236599 370 6 611 9 SRX8344627 Unrestricted 54.41 Metagenome 3300035122 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D1103M12 DOE Joint Genome Institute (JGI) 3300035122 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0386 813256981 1966624 737 4 1301 3 SRX8255758 Unrestricted 5.43 Metagenome 3300038976 *Microbiome Permanent Draft Soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA Soil microbial communities from sorghum farm in Illinois, United States - CABBI19_0009 DOE Joint Genome Institute (JGI) 3300038976 Metagenome Analysis metaspades v. 3.13.0 Yes Yes adina@iastate.edu Adina Howe No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.0633 -88.2058 2605695953 4546847 923 25 1505 40 SRX9391981 Unrestricted 14.79 Metagenome 3300038731 *Microbiome Permanent Draft Acid mine drainage microbial biofilm communities from Richmond Mine, California, USA Acid mine drainage biofilm communities from Richmond mine site C75, Iron Mt, CA, USA - AMDC751107 University of California, Berkeley 3300038731 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 40.67542 -122.53025 14524959 21464 13 0 22 0 0.0 Metagenome 3300055563 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.1W.8 SIP fraction DOE Joint Genome Institute (JGI) 3300055563 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 211094028 386225 74 0 142 0 Unrestricted 17.87 Metagenome 3300050282 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_40 DOE Joint Genome Institute (JGI) 3300050282 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -74.179 162.515 203956160 286772 7 15 14 18 SRX18235974 Restricted 48.66 Metagenome 3300057034 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M1P_20_22 DOE Joint Genome Institute (JGI) 3300057034 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0045281 -81.5645485 1609813453 2320538 688 2 1058 0 Unrestricted 14.89 Metagenome 3300035676 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D1_A DOE Joint Genome Institute (JGI) 3300035676 Metagenome Analysis spades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified soil 41.3776 -82.512 11330825658 27939678 5091 125 9755 213 SRX8175296 Unrestricted 6.98 Metagenome 3300044833 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_33CD DOE Joint Genome Institute (JGI) 3300044833 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4391 -106.0507 1349536389 2158087 292 61 455 88 SRX20649562 Unrestricted 15.29 Metagenome 3300035411 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada -18E_2b_13 mgh University of Alberta 3300035411 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified wastewater 56.7292 -111.3885 21124673 27365 18 0 23 0 0.0 Metagenome 3300040258 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Budapest, Hungary - 073_R1_022417 University of Maryland 3300040258 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 47.53556 19.01747 7873674 14365 15 3 25 5 0.0 Metagenome 3300002208 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - site 1 bottle C1 DOE Joint Genome Institute (JGI) 3300002208 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes blumerschuette@oakland.edu, blumerschuette@oakland.edu; rmkelly@ncsu.edu Sara Blumer-Schuette, Sara Blumer-Schuette; Robert Kelly No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6102 -110.4387 5684792 10447 7 0 9 0 SRX2554540 Unrestricted 0.0 Metagenome 3300013250 *Microbiome Permanent Draft Microbial communities associated with sugarcane Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Universidade Estadual de Campinas 3300013250 Metagenome Analysis Spades released by JGI data releasing policy No Yes scs.rafael@gmail.com Rafael Souza No Host-associated Plants Rhizosphere Roots Soil rizhosphere -22.8187222 -47.05896667 11179772 10790 3 1 4 1 0.0 Metagenome 3300003842 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 2_5/28/2013_ DNA (Hybrid Assembly) DOE Joint Genome Institute (JGI) 3300003842 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 157098828 242763 133 12 209 26 SRX2714819, SRX2885145, SRX2714818, SRX2885144, SRX2714817, SRX2714816, SRX2714815, SRX2714814 Unrestricted 0.0 Metagenome 3300004279 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m DOE Joint Genome Institute (JGI) 3300004279 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 888017003 2073956 794 72 1331 120 Unrestricted 0.0 Metagenome 2038011001 *Microbiome Permanent Draft Coalbed water microbial communities from New Mexico, USA Coalbed microbial communities from New Mexico, USA - 342 Virginia Polytechnic Institute and State University 2038011001 Metagenome Analysis released per JGI data release policy No Yes biswarup@vt.edu Biswarup Mukhopadhyay No Environmental Aquatic Groundwater Freshwater Coalbed water Coalbed water 36.728056 -108.220833 98800478 257734 120 0 179 0 0.0 Metagenome 3300070265 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Colorado, USA - CPER_045-M-20180702-COMP-DNA1 3300070265 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 65222199 184955 143 7 285 11 0.0 Metagenome 3300017824 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300017824 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1221940789 2752766 864 73 1848 117 SRX4068469 Unrestricted 19.43 Metagenome 3300029618 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36006 Beijing Genomics Institute (BGI) 3300029618 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 231557934 293311 176 2 242 0 0.0 Metagenome 3300017459 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS374 with 3.0UM filter JGI facility at Oak Ridge National Laboratory 3300017459 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 12224494 26920 13 3 13 8 0.0 Metagenome 3300037065 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 E-1-M DOE Joint Genome Institute (JGI) 3300037065 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0467 485642777 948245 321 7 609 12 SRX8160341 Unrestricted 7.92 Metagenome 3300029957 *Microbiome Permanent Draft Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG DOE Joint Genome Institute (JGI) 3300029957 Metagenome Analysis spades v. 3.12.0 Yes Yes rbneum@uw.edu Rebecca Neumann No Host-associated Plants Rhizosphere Roots Soil rhizosphere 47.6516 -122.3045 738827145 1672786 534 21 884 33 SRX5345977 Unrestricted 9.42 Metagenome 3300070218 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_004-M-20200601-COMP-DNA1 3300070218 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 47082599 148075 65 8 145 14 0.0 Metagenome 3300028813 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3 DOE Joint Genome Institute (JGI) 3300028813 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 1556733999 3147536 332 32 514 59 SRX5355607 Unrestricted 0.0 Metagenome 3300014270 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D1 DOE Joint Genome Institute (JGI) 3300014270 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jzz0026@lbl.gov; sgtringe@lbl.gov Jinglie Zhou; Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.049904 -121.765358 380320175 936018 495 6 926 12 SRX7182417 Unrestricted 0.0 Metagenome 3300029665 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 038_10_27_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029665 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 118885674 154163 163 1 204 5 0.0 Metagenome 3300013461 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100506 University of Pennsylvania 3300013461 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 7430294 19279 10 0 23 1 SRX756492 0.0 Metagenome 3300027492 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepA_8d DOE Joint Genome Institute (JGI) 3300027492 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 242899226 516758 219 17 342 32 SRX5245199 Unrestricted 10.65 Metagenome 7000000197 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160603188 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000197 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 102559403 191892 0 0 0 0 0.0 Metagenome 3300070772 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_043-O-20160727-COMP-DNA1 3300070772 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 121072778 334591 109 13 255 25 0.0 Metagenome 3300026976 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A4-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300026976 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 29394354 89413 118 0 189 0 SRX1991159 Unrestricted 0.0 Metagenome 3300026731 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A4-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300026731 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 19672863 66548 79 4 134 6 SRX1991120 Unrestricted 0.0 Metagenome 3300011775 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00904 Weill Cornell Medical College 3300011775 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.91 42128599 57669 17 0 22 0 SRX822867 0.0 Metagenome 3300002403 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 30JUL2009 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002403 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 69089815 166591 123 21 201 39 SRX1987801 Unrestricted 0.0 Metagenome 3300009848 *Microbiome Permanent Draft Wood falls microbial communities from Lacaze-Duthiers Canyon, Mediterranean Sea, France Wood falls microbial communities from Lacaze-Duthiers Canyon, Mediterranean Sea, France - F3ET Molecular Research LP (MR DNA) 3300009848 Metagenome Analysis IDBA_UD released per JGI data release policy Yes Yes pierre.galand@obs-banyuls.fr Pierre Galand No Environmental Aquatic Benthic Marine Wood fall Wood falls 42.4666667 3.4666667 54298688 88414 86 1 156 4 0.0 Metagenome 3300031543 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20 DOE Joint Genome Institute (JGI) 3300031543 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1657462358 3887799 398 6 670 15 SRX5665782 Unrestricted 12.36 Metagenome 3300034006 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 30SMC DOE Joint Genome Institute (JGI) 3300034006 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological biocrust 34.7856 -115.66 168982257 408366 379 20 683 31 SRX7619824 Unrestricted 9.79 Metagenome 3300005943 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_4-Nov-14 DOE Joint Genome Institute (JGI) 3300005943 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 575841206 2008275 1058 209 2020 374 SRX2838984 Unrestricted 0.0 Metagenome 3300022071 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022071 Metagenome Analysis spades v. 3.11.1-check Yes Yes chenf@umces.edu; bcampb7@clemson.edu Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.12 -75.25 178569236 468668 33 0 55 0 SRX2838769, SRX3300551, SRX3300552 Unrestricted 0.0 Metagenome 3300011262 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_5, total Toyama Prefectural University 3300011262 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Unclassified marine 37.31041 137.23108 236971197 537023 103 8 205 14 0.0 Metagenome 3300005751 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS852 Marine Biological Laboratory 3300005751 Metagenome Analysis Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow marine hydrothermal vent 18.547101 -81.71817 6.45 9306582 11791 1 1 5 1 0.0 Metagenome 3300020548 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 13JUL2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020548 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 130778991 277164 137 31 255 45 SRX1989906 Unrestricted 0.0 Metagenome 3300005063 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 03 soap2 Center for Advanced Technologies in Genomics, Sao Paulo University 3300005063 Metagenome Analysis SOAPdenovo2 released per PI's request No Yes joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 219225795 566561 7 6 41 17 0.0 Metagenome 3300008643 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 706846339 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008643 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 69592786 123813 55 0 85 0 0.0 Metagenome 3300002322 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP21-I5 3300002322 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300049264 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA4 DOE Joint Genome Institute (JGI) 3300049264 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 202054593 550118 318 4 627 5 Unrestricted 6.21 Metagenome 3300047444 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere DOE Joint Genome Institute (JGI) 3300047444 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1214 -123.2703 993129502 1592537 292 82 501 104 Unrestricted 13.01 Metagenome 2124908018 *Microbiome Draft Switchgrass rhizosphere microbial communities from Michigan, USA Switchgrass rhizosphere microbial communities from Rose Lake, Michigan, USA - BV2.2 v1 DOE Joint Genome Institute (JGI) 2124908018 Metagenome Analysis Newbler and/or Velvet released based on JGI ITS No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 44.166906 -89.649965 8465840 17507 21 0 80 0 Unrestricted 0.0 Metagenome 3300044564 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TSR27 DOE Joint Genome Institute (JGI) 3300044564 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.414 72351146 106502 87 5 83 4 SRX12686848 Unrestricted 189.26 Metagenome 3300000576 *Microbiome Draft Alkaline sediment microbial communities from Soda lakes and Soda Solonchak soils Alkaline brine water microbial communities from Lake Tanatar, Kulunda Steppe, Russia - 7KL_010_BRINE DOE Joint Genome Institute (JGI) 3300000576 Metagenome Analysis released based on JGI ITS Yes Yes g.muijzer@uva.nl Gerard Muyzer No Environmental Aquatic Lake Non-marine Saline and Alkaline Brine Alkaline brine water 51.37 79.5 418364148 886079 216 14 355 13 Unrestricted 0.0 Metagenome 3300013868 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In2 SAF170 SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300013868 Metagenome Analysis SPAdes 3.10.0 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1 -118.1 74035706 107829 48 20 62 30 Unrestricted 0.0 Metagenome 3300006068 *Microbiome Permanent Draft Mini-Metagenome - Microbial communities from the Yellowstone National Park Hotspring Microbial Communities from Mammoth Norris Corridor Bijah Spring, Yellowstone National Park, Wyoming, USA - Sample 4, Mini-Metagenomics Stanford University 3300006068 Metagenome Analysis spades 3.0 released by Brian Yu No Yes brianyu@stanford.edu, brian.yu@czbiohub.or Brian Yu Yes 28678007 Environmental Aquatic Hot (42-90C) Thermal springs Neutral hotsprings 44.761133 -110.7309 49305934 82701 29 0 80 0 0.0 Metagenome 2140918025 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3 v7 (version 7) DOE Joint Genome Institute (JGI) 2140918025 Metagenome Analysis Velvet released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 168462295 243805 80 3 154 0 Unrestricted 0.0 Metagenome 3300059692 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Michigan, United States - E2019-0010 DOE Joint Genome Institute (JGI) 3300059692 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.95472222 -83.52944444 1529811572 3979551 1264 71 2458 124 Unrestricted 0.0 Metagenome 3300006015 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_1-July-14 DOE Joint Genome Institute (JGI) 3300006015 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 131286553 456210 320 90 631 150 SRX2838890 Unrestricted 0.0 Metagenome 3300029876 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37877 Beijing Genomics Institute (BGI) 3300029876 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 221420618 284123 159 1 257 0 0.0 Metagenome 3300022707 *Microbiome Permanent Draft Deep seafloor sediment microbial communities from Yap Trench, western Pacific Ocean Marine sediment microbial community from Yap Trench, western Pacific Ocean - JL-Dive113-S04 Third Institute of Oceanography, State Oceanic Administration 3300022707 Metagenome Analysis idba v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Sediment Marine Unclassified sediment 9.865 138.656 1627465711 2902679 301 3 713 4 0.0 Metagenome 3300006948 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 DOE Joint Genome Institute (JGI) 3300006948 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Host-associated Plants Nodule Roots Unclassified Root nodules 34.0722 -118.4441 1005280272 2112181 217 1127 290 2137 SRX2752618 Unrestricted 0.0 Metagenome 3300051796 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_90 DOE Joint Genome Institute (JGI) 3300051796 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -76.91 160.935 522090960 785055 96 35 141 44 Restricted 0.0 Metagenome 3300013815 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00652 Weill Cornell Medical College 3300013815 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.77 -73.97 12779192 19940 16 0 21 0 SRX822619 0.0 Metagenome 7000000081 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159632143 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000081 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Ivanova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 140892823 221063 0 0 0 0 0.0 Metagenome 3300043127 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5CB15 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043127 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 38493640 107335 150 7 237 18 SRX8379341 Unrestricted 13.6 Metagenome 3300069326 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_007-O-20160720-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069326 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 8614045 27352 67 17 133 38 0.0 Metagenome 3300000395 *Microbiome Permanent Draft Simulated microbial communities from the University of Liverpool Simulated microbial community from the University of Liverpool 50ng_IonT_Nextera University of Liverpool 3300000395 Metagenome Analysis released per JGI data release policy No Yes j.e.kelly@student.liv.ac.uk Jennifer Kelly No Engineered Modeled Unclassified Simulated communities (DNA mixture) Unclassified Simulated 53.3484 -3.009 0 0 0 0 0 0 0.0 Metagenome 3300042361 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME20Jul2006D11-rr0817 DOE Joint Genome Institute (JGI) 3300042361 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 561017754 870263 228 23 316 30 Unrestricted 18.83 Metagenome 3300037786 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - ARW9_20151207 DOE Joint Genome Institute (JGI) 3300037786 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 116377541 193732 67 4 109 13 SRX9140179 Unrestricted 114.63 Metagenome 3300046658 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 soil DOE Joint Genome Institute (JGI) 3300046658 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.588118 -123.192766 6.64 376420067 694148 245 8 442 18 Unrestricted 17.69 Metagenome 3300026857 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgLMB (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026857 Metagenome Analysis spades v. 3.11.1 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 38452579 130893 103 4 205 6 SRX2521236 Unrestricted 0.0 Metagenome 3300041864 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - C_27_wk_3 DOE Joint Genome Institute (JGI) 3300041864 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.8816 -106.962 190886549 585763 350 7 616 20 SRX14808355 Unrestricted 7.64 Metagenome 3300044231 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T76 S DOE Joint Genome Institute (JGI) 3300044231 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7465 -64.3385 276716975 657869 14 2 36 2 Unrestricted 38.48 Metagenome 3300001248 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 18JUL2008 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300001248 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 9132121 16138 16 6 28 3 SRX3310669 Unrestricted 0.0 Metagenome 3300021082 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo DOE Joint Genome Institute (JGI) 3300021082 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified groundwater sediment 38.9208 -106.9484 .05 1089490434 2509227 638 10 1069 20 SRX4020905 Unrestricted 16.44 Metagenome 3300009441 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome DOE Joint Genome Institute (JGI) 3300009441 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 78.8669 -3.2286 1913999552 3593688 1652 1166 2503 1671 SRX2997873 Unrestricted 0.0 Metagenome 3300031911 *Microbiome Permanent Draft Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 DOE Joint Genome Institute (JGI) 3300031911 Metagenome Analysis spades v. 3.12.0 Yes Yes agaudin@ucdavis.edu Amelie Gaudin No Host-associated Plants Rhizosphere Roots Soil rhizosphere 38.5 -121.7 4681790223 11956110 2589 101 4318 184 SRX5799630 Unrestricted 9.44 Metagenome 3300046346 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_127 DOE Joint Genome Institute (JGI) 3300046346 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9703 -106.997 144443893 451873 771 35 1558 61 Restricted 0.0 Metagenome 3300056682 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.3W.7 SIP fraction DOE Joint Genome Institute (JGI) 3300056682 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 174274841 320478 103 1 156 2 Unrestricted 14.77 Metagenome 3300005837 *Microbiome Permanent Draft Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18 Australian Centre for Ecogenomics 3300005837 Metagenome Analysis CLC released per JGI data release policy No Yes crinke@lbl.gov Christian Rinke No Environmental Aquatic Coastal Marine Unclassified marine surface water -34.1192 151.2267 3061449005 7214657 614 154 1192 358 0.0 Metagenome 3300050203 *Microbiome Permanent Draft Freshwater microbial communities in Lagoa Grande, S?o Paulo, Brazil Freshwater microbial communities from Lagoa Grande, Apiai, Sao Paulo, Brazil - V00 Universidade de Sao Paulo 3300050203 Metagenome Analysis metaFlye v. 2.9 released by Samir Atum No Yes stevani@iq.usp.br Cassius Stevani No Environmental Aquatic Pond Freshwater Unclassified freshwater -24.5345 -48.66232 221908212 332035 63 36 78 32 0.0 Metagenome 3300064761 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 590 in Spirit river, Alberta, Canada - S00JY_0645 Microbiome Insights 3300064761 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 56.14294627 -117.3944095 71455844 108151 39 1 93 2 0.0 Metagenome 3300040318 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Temperate deciduous broadleaf forest soil microbial communities from Baltimore, USA - 012B_R1 University of Maryland 3300040318 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate deciduous broadleaf forest soil 39.34478333 -76.62581667 5146813 15940 51 0 96 0 0.0 Metagenome 3300012500 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.old.080610 DOE Joint Genome Institute (JGI) 3300012500 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 129604985 341804 254 22 505 47 SRX3527337 Unrestricted 0.0 Metagenome 3300008416 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Sea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC12B Shell Corporation 3300008416 Metagenome Analysis idba_ud Released on PI's request No Yes ebalsop@lbl.gov, nicolas.tsesmetzis@shell.com Eric Alsop, Nicolas Tsesmetzis No Environmental Aquatic Cold seeps Marine Sediment Sediment 27.4 -93.2 1177881052 4458807 765 18 1467 9 0.0 Metagenome 3300011667 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00354 Weill Cornell Medical College 3300011667 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.52 -40.52 32426854 48312 10 0 15 0 SRX822326 0.0 Metagenome 3300011955 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00533 Weill Cornell Medical College 3300011955 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -73.93 42206185 57735 28 0 33 0 SRX822501 0.0 Metagenome 3300026756 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10K2-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026756 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 23090149 77130 98 3 197 3 SRX2576202 Unrestricted 0.0 Metagenome 3300024432 *Microbiome Permanent Draft Deep subsurface microbial communities from various oceans to uncover new lineages of life (NeLLi) Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300024432 Metagenome Analysis spades v. 3.11.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Oceanic Marine Sediment Deep subsurface 1.759 96.774 1059859861 2422292 514 14 842 16 SRX2524389 Unrestricted 0.0 Metagenome 3300009919 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S6 University of New South Wales 3300009919 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 51847254 93658 4 12 10 20 0.0 Metagenome 3300005971 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_SurfaceA_ad_5m_LV_A DOE Joint Genome Institute (JGI) 3300005971 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 815264811 2379234 743 36 1367 47 SRX2775729 Unrestricted 0.0 Metagenome 3300040559 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_044-M-20160727-COMP-DNA1 Battelle Memorial Institute 3300040559 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 2540084 8840 36 0 55 0 0.0 Metagenome 3300005736 *Microbiome Permanent Draft Microbial degradation of oil Seawater microbial communities from Vineyard Sound, MA, USA - sterilised with crude oil T7 University of Wisconsin, Madison 3300005736 Metagenome Analysis velvet released per JGI data release policy No Yes rsimiste@haverford.edu, rlsimister@gmail.com rachel simister, Rachel Simister No Environmental Aquatic Unclassified Marine Unclassified marine 41.4417 -70.7744 59195408 118229 119 0 188 0 0.0 Metagenome 3300022043 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (v3) (version 3) DOE Joint Genome Institute (JGI) 3300022043 Metagenome Analysis spades v. 3.11.1-check Yes Yes bcampb7@clemson.edu Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 38.9819 -76.3716 6848607 21675 0 0 0 0 SRX5209309, SRX2753469 Unrestricted 0.0 Metagenome 3300001894 *Microbiome Permanent Draft Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils (2) Desert soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils - Control dataset for fatty acid perturbed soil, Sample 1 3300001894 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Terrestrial Unclassified Soil Desert Grassland soil 23.850674 69.734802 0 0 0 0 0 0 0.0 Metagenome 7000000417 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 158742018 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000417 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 136544317 209423 0 0 0 0 0.0 Metagenome 3300031449 *Microbiome Permanent Draft Rock endolithic microbial communities from Victoria Land, Antarctica Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud DOE Joint Genome Institute (JGI) 3300031449 Metagenome Analysis spades v. 3.12.0 Yes Yes selbmann@unitus.it Laura Selbmann Yes 32139564 Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock -77.7 160.75 864613965 1273941 154 48 223 69 SRX5225238 Unrestricted 33.45 Metagenome 3300002509 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Microcerotermes parvus P4 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Mp193P4 DOE Joint Genome Institute (JGI) 3300002509 Metagenome Analysis Yes Yes karen.rossmassler@gmail.com, brune@mpi-marburg.mpg.de Karen Rossmassler, Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut -4.7 11.83 1490046774 3614806 364 86 670 122 SRX2554834 Unrestricted 0.0 Metagenome 3300027112 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - Naphthalene biodegradation metagenome 12C8dose (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027112 Metagenome Analysis spades v. 3.11.1 Yes Yes elm3@cornell.edu Eugene Madsen Yes 30051558 Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.292222 -73.604444 104976044 340126 530 14 715 22 Unrestricted 0.0 Metagenome 3300035360 *Microbiome Permanent Draft Cathode biofilm microbial communities from solar microbial fuel cell (MFC) in Washington, DC, USA Cathode biofilm microbial communities from solar microbial fuel cell (MFC) in Washington, DC, USA - Sample 7 Naval Research Laboratory 3300035360 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Industrial production Unclassified Engineered product Unclassified Cathode biofilm 38.823126 -77.017947 74877412 95990 37 1 50 0 0.0 Metagenome 3300025720 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA4_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025720 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 37.43 138.83 582681086 1018780 480 3 684 7 SRX2158029 Unrestricted 0.0 Metagenome 3300021127 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 05AUG2008 epilimnion DOE Joint Genome Institute (JGI) 3300021127 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 92083396 204634 78 16 122 22 Unrestricted 0.0 Metagenome 3300026107 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_D1_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026107 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Terrestrial Wetlands Soil Unclassified Soil 37.496 -122.1329 121235774 312474 206 4 393 6 SRX2753768 Unrestricted 0.0 Metagenome 3300001680 *Microbiome Permanent Draft Black smokers hydrothermal plume microbial communities from Kilo Moana, Pacific Ocean Black smokers hydrothermal plume microbial communities from Kilo Moana, Pacific Ocean 3300001680 Metagenome Analysis IDBA-UD Public release per request from Karthik Anantharaman (April 15, 2014) No Yes akarthik@umich.edu Karthik Anantharaman No Environmental Aquatic Hydrothermal vents Marine Black smokers Black smokers hydrothermal plume -20.054108 -176.133522 317764985 406469 64 13 111 9 0.0 Metagenome 3300000916 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and M2 (2) DOE Joint Genome Institute (JGI) 3300000916 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 36066155 61748 27 0 35 1 SRX3311661 Unrestricted 0.0 Metagenome 3300000347 *Microbiome Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring microbial communities from Elkhorn Slough, Monterey Bay, USA - CD2A DOE Joint Genome Institute (JGI) 3300000347 Metagenome Analysis released based on JGI ITS Yes Yes jim.fredrickson@pnnl.gov, jim.fredrickson@pnnl.gov; pettridge2@llnl.gov Jim Fredrickson, Jim Fredrickson; Jennifer Pett-Ridge Yes 29167704 Environmental Aquatic Saline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 36.82188 -121.744 152203650 354269 213 13 345 21 Unrestricted 0.0 Metagenome 3300048773 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 S2 1-5 DOE Joint Genome Institute (JGI) 3300048773 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3532 19.0475 567193831 859950 157 11 263 21 Restricted 13.01 Metagenome 3300069410 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Appalachians & Cumberland Plateau, TN, USA - ORNL_043-O-20170621-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069410 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.96412 -84.2826 7734754 23778 47 14 90 14 0.0 Metagenome 3300043082 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver stomach microbial communities from Maple Ridge, British Columbia, Canada - Beaver3Stomach1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043082 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Stomach Digestive system Unclassified stomach 49.18 -122.54 343692038 538908 6 5 18 11 SRX8345803 Unrestricted 12.24 Metagenome 3300070952 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_037-O-20200713-COMP-DNA1 3300070952 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 56253927 151446 78 16 129 18 0.0 Metagenome 3300037869 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - AG_101317 DOE Joint Genome Institute (JGI) 3300037869 Metagenome Analysis metaspades v. 3.13.0 Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.893 -89.305 209012182 632274 396 24 787 33 SRX9382464 Unrestricted 6.03 Metagenome 3300042486 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME11Jul2008-rr0451 DOE Joint Genome Institute (JGI) 3300042486 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 934252717 1461266 332 39 467 68 Unrestricted 25.66 Metagenome 3300017553 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - eDNA 3rd pass 30_C Kraft MG (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017553 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes JMGladden@lbl.gov John Gladden No Engineered Solid waste Composting Mixed feedstock Commercial compost compost 37.83 -122.29 683141904 1255809 1018 23 1394 47 SRX4809025, SRX4809024 Unrestricted 0.0 Metagenome 3300038580 *Microbiome Permanent Draft Bacterial communities from sewage treatment works near Birtley, UK Bioelectrochemical system biofilm bacterial communities from sewage treatment works near Birtley, UK - 20 4M Northumbria University 3300038580 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes martin.spurr@newcastle.ac.uk Martin Spurr No Engineered Bioreactor Unclassified Anaerobic Unclassified wastewater 54.903212 -1.595078 38997345 80131 113 1 203 4 0.0 Metagenome 3300027421 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A2-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300027421 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 29478071 98036 113 0 197 0 SRX1991117 Unrestricted 0.0 Metagenome 3300011689 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00987 Weill Cornell Medical College 3300011689 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.59 -73.79 18317849 23901 5 0 5 0 SRX822949 0.0 Metagenome 3300054078 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_13_100 re-annotation DOE Joint Genome Institute (JGI) 3300054078 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 282117699 518777 164 1 280 1 SRX3003642 0.0 Metagenome 3300022806 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R13 Version 2 University of New South Wales 3300022806 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 103092832 173045 59 1 106 2 0.0 Metagenome 3300029777 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 023_10_29_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029777 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 203917506 282633 270 0 346 1 0.0 Metagenome 3300057198 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2020-0089 DOE Joint Genome Institute (JGI) 3300057198 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.76265 -83.329 635142033 1326388 428 182 711 292 Unrestricted 17.63 Metagenome 3300009473 *Microbiome Permanent Draft Host-associated microbial communities of aphids from plants in several locations around USA Microbial communities of aphids from lettuce in Tucson, AZ, USA - Acyrthosiphon lactucae NM052899 seqcov University of Texas, Austin 3300009473 Metagenome Analysis CLC Genomics released per JGI data release policy Yes Yes becky.chong@utexas.edu Rebecca Chong No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified lettuce 32.23184 -110.950699 249644053 130005 2 1 2 1 0.0 Metagenome 7000000538 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 159510762 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000538 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 106337999 143313 0 0 0 0 0.0 Metagenome 3300026649 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK07-C (SPAdes) DOE Joint Genome Institute (JGI) 3300026649 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.43 -89.41 4182133 13885 51 2 95 4 SRX1991353 Unrestricted 0.0 Metagenome 3300035584 *Microbiome Permanent Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - WEM-1_at_9-10_cm Genome Quebec 3300035584 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89896 -73.80984 772379851 1918122 579 12 1387 14 0.0 Metagenome 3300013386 *Microbiome Permanent Draft Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada Tubeworm-associated microbial communities from Endeavour hydrothermal vents, Juan de Fuca Ridge, Canada - low-flow bush Genome Quebec 3300013386 Metagenome Analysis AbySS v1.5.0 released by JGI data releasing policy No Yes smurdock@uvic.ca Sheryl Murdock No Environmental Aquatic Hydrothermal vents Marine Tubeworm bush Low-flow tubeworm bush 48.177778 -129.336389 134805401 357706 185 15 260 23 0.0 Metagenome 3300029001 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 343_12M Beijing Genomics Institute (BGI) 3300029001 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 50154350 60946 34 0 66 0 ERX491095 0.0 Metagenome 3300026516 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor_6/25/2014_ DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026516 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 615579895 901738 281 3 375 8 SRX2714813 Unrestricted 0.0 Metagenome 3300045093 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_6_F DOE Joint Genome Institute (JGI) 3300045093 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 190442183 220768 113 2 121 1 Unrestricted 79.68 Metagenome 3300009294 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 686765762 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300009294 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes NMikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 2930069 8342 17 0 32 0 0.0 Metagenome 3300001984 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot1-1 3300001984 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 7661742 43727 121 4 190 3 0.0 Metagenome 3300037601 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - ARW1_20151111 DOE Joint Genome Institute (JGI) 3300037601 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 348379701 503824 166 7 232 9 SRX9140355 Unrestricted 51.15 Metagenome 7000000145 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 763536994 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000145 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 172754645 283778 0 0 0 0 0.0 Metagenome 3300052300 *Microbiome Permanent Draft Fungi and Bacteria interaction communities from University of Neuchatel, Neuchatel, Switzerland Coprinopsis cinereal x fungal highway bacteria co-culture from University of Neuchatel, Switzerland - ATCcR3C-21 DOE Joint Genome Institute (JGI) 3300052300 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pchain@lanl.gov patrick chain No Host-associated Fungi Unclassified Mycelium Unclassified Mycelium 47.283383 7.439722 117265829 163836 110 3 143 3 Unrestricted 124.64 Metagenome 3300071066 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_012-M-20170719-COMP-DNA1 3300071066 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 3044195 10417 33 3 62 8 0.0 Metagenome 3300044256 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_2 DOE Joint Genome Institute (JGI) 3300044256 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 361874906 942473 454 28 828 49 Unrestricted 7.06 Metagenome 3300006284 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 809635352 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006284 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 26230895 44279 15 0 30 0 0.0 Metagenome 3300013019 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in West Virginia, USA - MSEEL Well Study Marcellus 5H_2016_07_13 DOE Joint Genome Institute (JGI) 3300013019 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back deep subsurface 39.6018 -79.9761 39060901 127432 51 0 139 0 SRX3021890 Unrestricted 194.58 Metagenome 3300049716 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 E1 1-5 DOE Joint Genome Institute (JGI) 3300049716 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3544 19.0458 469662787 776642 289 16 447 34 Restricted 12.88 Metagenome 3300027828 *Microbiome Permanent Draft Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd47.2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027828 Metagenome Analysis spades v. 3.11.1 Yes Yes jeremy.rich@maine.edu Jeremy Rich No Environmental Aquatic Coastal Marine Sediment Marine sediment 1128462926 2061102 689 27 1103 43 SRX2837962 Unrestricted 0.0 Metagenome 3300020183 *Microbiome Permanent Draft Freshwater microbial communities from Lake Tanganyika, Tanzania Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface DOE Joint Genome Institute (JGI) 3300020183 Metagenome Analysis spades v. 3.10.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater lake -6.4446 29.9042 1081273413 1872629 340 75 558 114 SRX4817987 Unrestricted 56.62 Metagenome 3300047627 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA100-CHU DOE Joint Genome Institute (JGI) 3300047627 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6365 -83.4956 257222791 754956 301 22 478 29 Unrestricted 6.77 Metagenome 3300045939 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Leaf microbial communities from farm grass in Deerfield, Massachusetts, United States - Orchardgrass_Phyllosphere_Control4 DOE Joint Genome Institute (JGI) 3300045939 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Host-associated Plants Unclassified Phyllosphere Unclassified Phyllosphere 42.4788 -72.5788 894105774 1597011 136 172 236 299 Restricted 0.0 Metagenome 3300038364 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI151_2019_mar_150m DOE Joint Genome Institute (JGI) 3300038364 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 235355204 498145 219 1 331 6 SRX9402723 Unrestricted 11.35 Metagenome 3300028351 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #192 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028351 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 46674725 75658 8 1 21 1 SRX2526861 Unrestricted 0.0 Metagenome 3300017713 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 14 SPOT_SRF_2010-08-11 DOE Joint Genome Institute (JGI) 3300017713 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 262535450 613143 22 40 36 60 SRX7207088, SRX7207089 Unrestricted 0.0 Metagenome 3300047291 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Sacramento River, California, USA - NASQAN2016_016 DOE Joint Genome Institute (JGI) 3300047291 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.456 -121.5013 294414104 721819 475 80 860 154 Unrestricted 18.71 Metagenome 3300059621 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2021-2000 DOE Joint Genome Institute (JGI) 3300059621 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.76265 -83.329 1467515816 3298801 481 260 812 367 Unrestricted 0.0 Metagenome 3300048639 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from North Pacific Ocean - CTD-AT42-06-003-450m-0.65 DOE Joint Genome Institute (JGI) 3300048639 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 8.39977 -104.9807 421016025 682995 214 14 351 22 Unrestricted 32.96 Metagenome 3300030008 *Microbiome Permanent Draft Sediment microbial communities from Lake Clifton, Australia Sediment microbial communities from Lake Clifton, Australia - LCT14M-22 University of Texas, Austin 3300030008 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Sediment Freshwater Unclassified Sediment -32.7345 115.6507 34571463 87202 57 3 102 5 0.0 Metagenome 3300038649 *Microbiome Permanent Draft Microbial communities from Yellowstone National Park hot springs 2017 Hot spring sediment microbial communities from Empress Pool, Yellowstone National Park, USA - 170630A University of Minnesota Genomics Center 3300038649 Metagenome Analysis SPAdes v. 3.11.0 released by JGI data releasing policy Yes Yes trinityh@umn.edu Trinity Hamilton No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.68753906 -110.72755778 685144425 1951360 446 24 928 27 0.0 Metagenome 3300035069 *Microbiome Permanent Draft Marine planktonic microbial communities from Bay of Bengal, Indian Ocean Marine planktonic microbial communities from Bay of Bengal, Indian Ocean - 3Q (SRX5580383-SRR8790592) Nanyang Technological University 3300035069 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released by JGI data releasing policy Yes Yes flauro@ntu.edu.sg Federico Lauro No Environmental Aquatic Unclassified Marine Unclassified Marine planktonic 5.86 89.25 846959786 2002567 629 348 1007 526 0.0 Metagenome 3300004181 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 9_HOW4 DOE Joint Genome Institute (JGI) 3300004181 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 243054365 651151 162 13 289 39 SRX2720110 Unrestricted 0.0 Metagenome 3300010989 *Microbiome Permanent Draft Mining for adhesins from protozoa-associated epibionts Protozoa-associated epibionts from sheep rumen, Palmerston North, New Zealand - adhesins screened round 2 Leibniz Institute 3300010989 Metagenome Analysis Geneious 8.1.5 released by JGI data releasing policy No Yes filomena.ng@agresearch.co.nz Filomena Ng No Host-associated Mammals Stomach Digestive system Rumen Rumen -40.355 175.6117 2523 7 0 0 0 0 0.0 Metagenome 3300011540 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00399 Weill Cornell Medical College 3300011540 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.67 -73.99 14692426 19017 10 0 12 0 SRX822370 0.0 Metagenome 3300038516 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark - 1173-PRJ1066-RA-Sewage-86_S15_L001 Technical University of Denmark 3300038516 Metagenome Analysis Yes Yes No Engineered Wastewater Unclassified Sewage Unclassified Sewage 55.608534 12.450516 12446326 30651 93 1 133 4 ERX1584015 0.0 Metagenome 3300001616 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF034 DOE Joint Genome Institute (JGI) 3300001616 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 1629705 5181 24 1 40 3 SRX2014378 Unrestricted 0.0 Metagenome 3300041585 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Lake Zvezda #29 DOE Joint Genome Institute (JGI) 3300041585 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5262 78.469 296890152 551485 162 52 254 82 SRX10085949 Unrestricted 20.47 Metagenome 3300031704 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #177 DOE Joint Genome Institute (JGI) 3300031704 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 420489974 716903 140 24 159 35 SRX5649412 Unrestricted 46.77 Metagenome 3300018467 *Microbiome Permanent Draft Bovine feces microbial communities from beef and dairy calves in Davis, CA, USA Bovine feces microbial communities from dairy calf in Davis, CA, USA - DMJL001A re-assembly QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018467 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes jxnliu@ucdavis.edu Jinxin Liu No Host-associated Mammals Large intestine Digestive system Fecal feces 38.5449 -121.7405 21522958 40702 39 2 80 5 0.0 Metagenome 3300027466 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK03-B (SPAdes) DOE Joint Genome Institute (JGI) 3300027466 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 30662075 97003 94 11 162 11 SRX2575244 Unrestricted 0.0 Metagenome 3300056603 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.5C.8 SIP fraction DOE Joint Genome Institute (JGI) 3300056603 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 252653789 479500 198 9 323 24 Unrestricted 14.44 Metagenome 3300001471 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 DOE Joint Genome Institute (JGI) 3300001471 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 529735656 1435191 533 135 953 201 SRX1987237 Unrestricted 0.0 Metagenome 3300000980 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY79 J. Craig Venter Institute (JCVI) 3300000980 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 941135696 3067013 147 70 448 109 0.0 Metagenome 3300069486 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_003-M-20160718-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069486 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 54299340 169370 159 20 297 15 0.0 Metagenome 3300043747 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Para, Brazil - FS11 DOE Joint Genome Institute (JGI) 3300043747 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -2.706 -54.7848 855097458 2188110 467 3 819 9 Unrestricted 8.19 Metagenome 3300009712 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR1_MetaG DOE Joint Genome Institute (JGI) 3300009712 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 36.29 139.38 618227095 1239073 740 0 1168 3 SRX2157909 Unrestricted 0.0 Metagenome 3300057174 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2020-0047 DOE Joint Genome Institute (JGI) 3300057174 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.76265 -83.329 439068993 915381 365 169 572 256 Unrestricted 13.43 Metagenome 3300012091 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ483 (23.06) DOE Joint Genome Institute (JGI) 3300012091 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.0872 163.7685 573817175 1299321 422 0 734 1 SRX3372063 Unrestricted 0.0 Metagenome 3300001549 *Microbiome Finished Human fecal microbial communities from the University of Tokyo, Japan, of healthy Japanese infants and adults Human fecal microbial communities from the University of Tokyo - healthy human sample In-R, Adult, Male 3300001549 Metagenome Analysis PCAP released per Nikos No Yes hattori@k.u-tokyo.ac.jp Hattori M Yes 17916580 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 35.71 139.76 0 0 0 0 0 0 0.0 Metagenome 3300024290 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08 DOE Joint Genome Institute (JGI) 3300024290 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 236683742 546109 253 19 463 47 SRX4547511 Unrestricted 11.87 Metagenome 3300003765 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 2_5/13/2013_ DNA DOE Joint Genome Institute (JGI) 3300003765 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 118237500 219371 159 17 202 24 SRX2714413 Unrestricted 0.0 Metagenome 3300018489 *Microbiome Finished Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India - point GR3 Spades_127 Life Technologies 3300018489 Metagenome Analysis SPAdes 3.10.1 released by JGI data releasing policy No Yes sarkar.jayeeta12@gmail.com, psar@hijli.iitkgp.ernet.in Pinaki Sar No Engineered Built environment Petroleum sludge Oil refinery Unclassified petroleum sludge 26.18471 91.80725 186305292 340144 106 1 141 2 SRX2510723 0.0 Metagenome 3300010047 *Microbiome Permanent Draft Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions Tropical forest soil microbial communities from Panama - MetaG Plot_30 DOE Joint Genome Institute (JGI) 3300010047 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes cpan@ou.edu Chongle Pan No Environmental Terrestrial Tropical forest Soil Bulk soil Tropical forest soil 9.1086 -79.8436 3090930951 6585967 1411 73 2625 126 SRX2525721 Unrestricted 0.0 Metagenome 3300014840 *Microbiome Permanent Draft Human bile duct microbial communities from gallstone patients in Hangzhou, China Human bile duct microbial communities from gallstone patients in Hangzhou, China - B2_bile Beijing Institution of Radiation Medicine 3300014840 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Biliary tract Digestive system Bile ducts: Bile Human bile duct 3621784 6534 3 5 4 2 SRX957021, SRX957034 0.0 Metagenome 3300004252 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 99_LOW12 DOE Joint Genome Institute (JGI) 3300004252 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 52758751 120407 48 0 82 0 SRX2721175 Unrestricted 0.0 Metagenome 3300026023 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026023 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 4140950405 10009703 1496 164 2703 304 SRX2832621 Unrestricted 0.0 Metagenome 3300017472 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS377 with 0.1UM filter JGI facility at Oak Ridge National Laboratory 3300017472 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 34537528 87970 31 2 41 3 0.0 Metagenome 3300026364 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - P.F.S.T50 DOE Joint Genome Institute (JGI) 3300026364 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 27906201 69913 75 9 151 14 SRX4550138 Unrestricted 83.9 Metagenome 3300032668 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18025 DOE Joint Genome Institute (JGI) 3300032668 Metagenome Analysis spades v. 3.13.0 Yes Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.0411 -89.6861 679787274 1219791 377 38 544 61 SRX7891772 Unrestricted 21.54 Metagenome 3300035087 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - T9-0 Autonomous University of Barcelona 3300035087 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 16441690 86542 160 0 275 0 0.0 Metagenome 3300008480 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 160158126 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008480 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 233400835 339367 240 2 252 4 0.0 Metagenome 3300003272 *Microbiome Permanent Draft Cnidaria microbial communities from the Caribbean, with Black Band disease Black Band Cyanobacteria Enrichment 3300003272 Metagenome Analysis IDBA_UD released per PI's request No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified Cnidaria 24.5484806 -81.4059137 117262816 147489 87 6 122 15 0.0 Metagenome 3300010967 *Microbiome Permanent Draft Inactive Hydrothermal Chimney Metagenome Study Microbial communities from the inside layer of the microbial mat covering an inactive hydrothermal chimney from the Kolumbo submarine volcano, Santorini, Greece - V16_c.in Hellenic Centre for Marine Research (HCMR) 3300010967 Metagenome Analysis MIRA 4.9.5_2 released by JGI data releasing policy Yes Yes ch.christakis@yahoo.gr Christos Christakis No Environmental Aquatic Hydrothermal vents Marine Microbial mats Hydrothermal chimney microbial mat 36.52 25.48 181380085 307763 253 3 175 2 0.0 Metagenome 3300070759 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_041-M-20210524-COMP-DNA1 3300070759 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 115454 398 6 0 9 0 0.0 Metagenome 3300000890 *Microbiome Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil v8 (version 8) DOE Joint Genome Institute (JGI) 3300000890 Metagenome Analysis Artifact filter, partition at k=32, assemble with Velvet at k19-45, Minimus2 released based on JGI ITS Yes Yes janet.jansson@pnnl.gov Janet Jansson Yes 30158906 Environmental Terrestrial Unclassified Soil Grasslands Soil 39.0042816 -77.1012173 967093352 3131677 2382 59 4420 100 Unrestricted 0.0 Metagenome 3300019745 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLT_8-9_MG DOE Joint Genome Institute (JGI) 3300019745 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 162227379 382816 254 39 470 61 SRX3983467 Unrestricted 4.15 Metagenome 3300001878 *Microbiome Permanent Draft Desert and grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils - Sample 3 3300001878 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Terrestrial Unclassified Soil Grasslands Desert and grassland soil 23.850674 69.734802 0 0 0 0 0 0 0.0 Metagenome 3300004097 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG DOE Joint Genome Institute (JGI) 3300004097 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes hteeling@mpi-bremen.de Hanno Teeling No Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Pelagic marine 54.18194 7.9 5431569150 13267245 3163 501 6446 1472 SRX2518194, SRX2518193 Unrestricted 0.0 Metagenome 3300003086 *Microbiome Permanent Draft Hydrothermal vent plume microbial communities from Guaymas Basin, Pacific Ocean Marine viral communities from deep ocean hydrothermal plumes from the Lau and Guaymas Basin University of Michigan 3300003086 Metagenome Analysis IDBA-UD v. 08/15/2013 Made public because these are downloaded from Genbank No Yes gdick@umich.edu Gregory Dick Yes 24789974 Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume -20.053234 -176.133763 2311950 3204 0 0 0 0 0.0 Metagenome 3300038756 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A3_35cm_18M University of Tennessee 3300038756 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 189060925 431786 132 4 307 5 SRX710627 0.0 Metagenome 3300002482 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - ETNP_2_30 DOE Joint Genome Institute (JGI) 3300002482 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 18.92 -108.7999 256372035 605894 18 2 24 0 SRX2557353 Unrestricted 0.0 Metagenome 3300055469 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.3C.9 SIP fraction DOE Joint Genome Institute (JGI) 3300055469 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 394965930 683906 283 10 406 10 Unrestricted 17.75 Metagenome 3300020249 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000482 (ERX556038-ERR599056) CEA Genoscope 3300020249 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -31.0136 4.6932 184323481 475963 236 34 380 67 0.0 Metagenome 3300025028 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from Cariaco Basin, Caribbean Sea - 29_WHOI_OMZ (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025028 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 10.847 -65.114 32341423 48064 25 4 36 3 SRX2929476 Unrestricted 0.0 Metagenome 3300048121 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_111103.NP2 DOE Joint Genome Institute (JGI) 3300048121 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 593870761 1306892 343 29 565 59 Unrestricted 16.08 Metagenome 3300009552 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_20_150 DOE Joint Genome Institute (JGI) 3300009552 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 366638604 656341 236 11 381 14 SRX3006110 Unrestricted 0.0 Metagenome 3300029590 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35392 Beijing Genomics Institute (BGI) 3300029590 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 295306382 365264 245 2 328 2 0.0 Metagenome 3300012187 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ448 (21.06) DOE Joint Genome Institute (JGI) 3300012187 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.0824 163.7502 806250750 1749225 511 2 839 4 SRX3371906 Unrestricted 0.0 Metagenome 3300049780 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S40_A_D89 hydrophobic DOE Joint Genome Institute (JGI) 3300049780 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 227172766 351227 87 8 120 5 Unrestricted 34.28 Metagenome 3300050669 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_2A1_100118_1910 DOE Joint Genome Institute (JGI) 3300050669 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 490355719 793604 234 66 327 102 Unrestricted 20.96 Metagenome 3300053750 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHL_03 DOE Joint Genome Institute (JGI) 3300053750 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.40849 -82.168434 347837299 458237 9 19 17 12 Restricted 58.97 Metagenome 3300045732 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_2_E DOE Joint Genome Institute (JGI) 3300045732 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 153633274 178493 86 2 103 2 Unrestricted 118.17 Metagenome 3300050136 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim3 10-14 DOE Joint Genome Institute (JGI) 3300050136 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.352963 19.04747 617474945 912906 164 22 291 36 Restricted 12.93 Metagenome 3300055487 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.4W.9 SIP fraction DOE Joint Genome Institute (JGI) 3300055487 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 157575175 302729 173 10 269 18 Unrestricted 11.86 Metagenome 3300041439 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass leaf microbial community from Lincoln, Canterbury, New Zealand - RGL18_9 MetaG AgResearch, New Zealand, Mosgeil 3300041439 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 765341275 1350109 153 86 404 188 0.0 Metagenome 3300054094 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin10_30_metaG re-annotation DOE Joint Genome Institute (JGI) 3300054094 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1141103245 2022524 423 8 666 18 SRX3293039 0.0 Metagenome 3300042734 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - P_c22.9 Re-assembly Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042734 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1247 -89.1411 59210529 56781 3 1 6 6 SRX5234778 0.0 Metagenome 2149837000 *Microbiome Permanent Draft Human respiratory microbial communities from Chinese National Human Genome Center, Beijing, of patients with ALRTI Human respiratory microbiome from patients with ALRTI, Chinese National Human Genome Center, Beijing - S1-091225 Chinese National Human Genome Center, Beijing 2149837000 Metagenome Analysis Newbler released per JGI data release policy No Yes yangj@ipbcams.ac.cn Jian Yang No Host-associated Mammals: Human Lung Respiratory system Unclassified Human respiratory 39.874 116.433 81305304 123487 36 8 48 0 0.0 Metagenome 3300012636 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100434 University of Pennsylvania 3300012636 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 23382620 55304 31 1 38 1 SRX756564 0.0 Metagenome 3300070358 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Alaska, USA - DEJU_014-M-20180618-COMP-DNA1 3300070358 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 26837415 79701 113 24 204 36 0.0 Metagenome 3300012169 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC074 MetaG DOE Joint Genome Institute (JGI) 3300012169 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 34.5815 -78.4487 245907622 494427 126 53 262 142 SRX3539716 Unrestricted 0.0 Metagenome 3300029246 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002664-33 Beijing Genomics Institute (BGI) 3300029246 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 185639357 247083 152 1 235 0 0.0 Metagenome 3300044995 *Microbiome Permanent Draft Microbial mat bacterial communities from hot springs in Waikite Valley, Taupo Volcanic Zone, New Zealand Microbial mat bacterial communities from hot spring in Waikite Valley, New Zealand - LMW_ETR_NZ_2018_Waikite_3_1 DOE Joint Genome Institute (JGI) 3300044995 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes LMWARD@post.harvard.edu Lewis Ward No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats microbial mat -38.3276 176.3016 499345119 690613 200 6 266 9 Unrestricted 60.76 Metagenome 3300003319 *Microbiome Permanent Draft Sugarcane root and bulk soil microbial communities from Ayr, Burdekin, Queensland Australia Sugarcane bulk soil Sample L2 3300003319 Metagenome Analysis CLC genomics workbench 7 released by JGI data releasing policy No Yes yun.yeoh@uqconnect.edu.au Yun Kit Yeoh No Environmental Terrestrial Unclassified Soil Agricultural land Sugarcane root and bulk soil -19.733298 147.17873 614329709 878931 51 22 72 30 0.0 Metagenome 3300070646 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountains, Colorado, USA - RMNP_041-O-20200701-COMP-DNA1 3300070646 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 22846582 70985 74 2 163 10 0.0 Metagenome 3300046790 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 soil DOE Joint Genome Institute (JGI) 3300046790 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.588202 -123.193144 6.84 264220770 486467 225 21 431 27 Unrestricted 18.9 Metagenome 3300000684 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 31 DOE Joint Genome Institute (JGI) 3300000684 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 5798912 19384 28 0 42 0 SRX4340704 Unrestricted 0.0 Metagenome 3300035191 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0608S02 DOE Joint Genome Institute (JGI) 3300035191 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8959 -97.0388 1424330925 3254891 899 14 1572 18 SRX8257618 Unrestricted 7.23 Metagenome 3300002160 *Microbiome Permanent Draft Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran, Adriatic Sea Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge pinacoderm, lysed by proteinase K digestion DOE Joint Genome Institute (JGI) 3300002160 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes ute.hentschel@uni-wuerzburg.de Ute Hentschel Humeida No Host-associated Porifera Unclassified Sponge Unclassified Host-associated 45.5099 13.56 229758624 442475 152 8 253 18 SRX4919989 Unrestricted 0.0 Metagenome 3300071021 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_001-M-20190613-COMP-DNA1 3300071021 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 5492933 18040 26 6 61 9 0.0 Metagenome 3300070519 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Soaproot Saddle, California, USA - SOAP_003-M-20180531-COMP-DNA1 Battelle Memorial Institute 3300070519 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 37.033983 -119.250835 5.86-7.33 86635 301 8 0 12 2 0.0 Metagenome 3300042303 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jun2010-rd0522 DOE Joint Genome Institute (JGI) 3300042303 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 723248474 1122332 238 50 324 69 Unrestricted 28.55 Metagenome 3300000353 *Microbiome Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring microbial communities from Elkhorn Slough, Monterey Bay, USA - MD6A DOE Joint Genome Institute (JGI) 3300000353 Metagenome Analysis released based on JGI ITS Yes Yes jim.fredrickson@pnnl.gov, jim.fredrickson@pnnl.gov; pettridge2@llnl.gov Jim Fredrickson, Jim Fredrickson; Jennifer Pett-Ridge Yes 29167704 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline mat 36.82188 -121.744 178522206 389398 245 12 436 18 Unrestricted 0.0 Metagenome 3300033163 *Microbiome Permanent Draft Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_8_08-R3 DOE Joint Genome Institute (JGI) 3300033163 Metagenome Analysis spades v. 3.13.0 Yes Yes ziels@mail.ubc.ca Ryan Ziels No Engineered Bioreactor Unclassified Anaerobic Unclassified sludge 51.9691 5.6654 330707143 499895 362 0 465 1 SRX7542619 Unrestricted 50.86 Metagenome 3300025919 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025919 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 3181814261 7556425 1940 151 3312 269 SRX2740132 Unrestricted 0.0 Metagenome 3300045242 *Microbiome Permanent Draft Forest soil microbial communities from boreal-temperate forests in Minnesota, USA Forest soil microbial communities from Hubachek Wilderness Research Center, Ely, Minnesota, USA - Ely DRY DO J6 DOE Joint Genome Institute (JGI) 3300045242 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pankaj.trivedi@colostate.edu Pankaj Trivedi No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 47.55 -92.3 328193904 579971 151 16 309 18 Unrestricted 16.7 Metagenome 3300004162 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 49_LOW8 DOE Joint Genome Institute (JGI) 3300004162 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 62143548 141478 39 0 54 0 SRX2720581 Unrestricted 0.0 Metagenome 3300029736 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37198R1 Beijing Genomics Institute (BGI) 3300029736 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 188294422 233883 168 0 224 0 0.0 Metagenome 3300029971 *Microbiome Permanent Draft Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil Fecal microbial communities from captivity howler monkeys from Sao Paulo Zoo, Brazil - Buba_C2 Reanalysis Center for Advanced Technologies in Genomics, Sao Paulo University 3300029971 Metagenome Analysis metaSPAdes v. 3.12.0 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Host-associated Mammals Large intestine Digestive system Fecal feces -23.651072 -46.620675 16148912 36357 42 0 73 0 0.0 Metagenome 3300002815 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G07K2-12 DOE Joint Genome Institute (JGI) 3300002815 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 119086 401 16 0 27 1 SRX1991311 Unrestricted 0.0 Metagenome 3300042244 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D291_2 DOE Joint Genome Institute (JGI) 3300042244 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 203391144 300801 159 8 236 12 Unrestricted 67.66 Metagenome 3300009720 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS1_MetaG DOE Joint Genome Institute (JGI) 3300009720 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 43.77 142.37 794434914 1419920 824 4 1232 7 SRX2157906 Unrestricted 0.0 Metagenome 3300045424 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Tennessee River, Kentucky, USA - NASQAN2011_031 DOE Joint Genome Institute (JGI) 3300045424 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 37.0378 -88.5294 224956142 608385 306 71 547 110 Unrestricted 0.0 Metagenome 3300045859 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from the Norris-Mammoth Corridor, Yellowstone National Park, WY, United States - MSUNE_NM_01 University of Wisconsin, Madison 3300045859 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.73616 -110.70644 164433541 240091 80 3 128 5 0.0 Metagenome 3300055090 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_1-s30 day 308 DOE Joint Genome Institute (JGI) 3300055090 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 1698514181 2561183 533 220 658 229 Unrestricted 34.25 Metagenome 3300043026 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - Beaver6Rectum1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043026 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Rectum rectum 49.18 -122.54 61975116 119273 101 5 183 12 SRX8346781 Unrestricted 68.11 Metagenome 3300030372 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_111 - TARA_R100000655 CEA Genoscope 3300030372 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -16.9587 -100.6751 210457965 391018 34 0 51 0 0.0 Metagenome 3300028546 *Microbiome Permanent Draft Antarctic Nanohaloarchaea Enriched hypersaline water microbial communities from Club Lake, Antarctica - Round 1 Garvan Institute of Medical Research 3300028546 Metagenome Analysis MiniASM v. 0.2-r168-dirty, MiniMAP v. 2.9, Racon v. 1.2.0 released by JGI data releasing policy Yes Yes m.allen@unsw.edu.au; r.cavicchioli@unsw.edu.au Michelle Allen; Rick Cavicchioli Yes 31253704 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline water -68.5417 78.2467 30804203 50530 20 0 22 0 0.0 Metagenome 3300019729 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - BRT_4-5_MG DOE Joint Genome Institute (JGI) 3300019729 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 123555323 303924 217 10 454 22 SRX3982610 Unrestricted 3.5 Metagenome 3300040624 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA FertPrarie soil microbial communities from Boone County, Iowa, USA - PF15-SM-July2012 Iowa State University 3300040624 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land FertPrarie soil 42.01375 -93.783837 1281130 4456 22 2 43 2 0.0 Metagenome 3300026478 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepA_8h DOE Joint Genome Institute (JGI) 3300026478 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 191661534 430619 183 22 325 32 SRX4547330 Unrestricted 12.44 Metagenome 3300046536 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere DOE Joint Genome Institute (JGI) 3300046536 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1215 -123.2705 952604132 1550014 367 112 545 154 Unrestricted 14.96 Metagenome 3300008252 *Microbiome Permanent Draft Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico and Hudson Canyon, USA Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM15B Gulf of Mexico DOE Joint Genome Institute (JGI) 3300008252 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mcredmond@uncc.edu Molly C. Redmond Yes 28871146 Environmental Aquatic Cold seeps Marine Unclassified Methane seep mesocosm 27.37 -90.57 802871420 1680640 1252 5 2062 13 Unrestricted 0.0 Metagenome 3300000198 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_F_10_SI03_200 DOE Joint Genome Institute (JGI) 3300000198 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Oceanic Marine Aphotic zone Marine 48.35 -123.3 156793823 306148 168 1 295 0 Unrestricted 0.0 Metagenome 7000000631 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 338793263 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000631 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 26246782 46859 0 0 0 0 0.0 Metagenome 3300014489 *Microbiome Permanent Draft Permafrost microbial communities from Stordalen Mire, Sweden Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG DOE Joint Genome Institute (JGI) 3300014489 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rich.270@osu.edu Virginia Rich Yes 30013118 Environmental Terrestrial Wetlands Soil Permafrost Palsa 68.35 19.05 1273541279 2409184 551 17 919 42 SRX3593701 Unrestricted 7.85 Metagenome 3300001170 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 DOE Joint Genome Institute (JGI) 3300001170 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 74337006 201327 130 27 258 50 SRX3312438 Unrestricted 0.0 Metagenome 3300005777 *Microbiome Permanent Draft Human lung microbial communities from healthy (non-smokers and smokers) and HIV infected subjects Human lung microbial communities from Normal Smoker Supraglottic 110406-1 New York University Langone Medical Center 3300005777 Metagenome Analysis Shotgun released per JGI data release policy No Yes leopoldo.segal@nyumc.org Leopoldo N Segal No Host-associated Mammals: Human Lung Respiratory system Unclassified Lung Microbiome 40.7127 -74.0059 34379873 101792 2 6 7 1 0.0 Metagenome 3300042111 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lake Yojoa, Honduras - Yojoa_06_2019_E_epi (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300042111 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Lake Freshwater Unclassified Freshwater 14.8744 -87.9835 862951144 1638286 402 76 651 120 Unrestricted 20.48 Metagenome 3300048885 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from Gulf of California, Mexico - CTD-FK190211-025-400m-0.65 DOE Joint Genome Institute (JGI) 3300048885 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 23.95663 -108.86187 245164515 412495 159 16 249 27 Unrestricted 39.55 Metagenome 3300022057 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022057 Metagenome Analysis spades v. 3.11.1-check Yes Yes chenf@umces.edu; bcampb7@clemson.edu Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.149325 -75.288339 153527918 407599 19 0 32 0 SRX3785816, SRX3785815, SRX2745104 Unrestricted 0.0 Metagenome 3300047350 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TSTR6 DOE Joint Genome Institute (JGI) 3300047350 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dnoguera@wisc.edu Daniel Noguera Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.073847 -89.414083 38676337 49131 42 3 44 3 SRX12729153 Unrestricted 271.42 Metagenome 3300038494 *Microbiome Permanent Draft Acid mine drainage microbial biofilm communities from Richmond Mine, California, USA Acid mine drainage biofilm communities from Richmond mine site C75, Iron Mt, CA, USA - AMDC751110 University of California, Berkeley 3300038494 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 40.67542 -122.53025 11505339 15463 9 1 18 0 0.0 Metagenome 3300028405 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 2 #697 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028405 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 67407750 131992 84 21 132 29 SRX3296314 Unrestricted 0.0 Metagenome 3300011179 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep lake, Antarctica - Metagenome #192 DOE Joint Genome Institute (JGI) 3300011179 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 64342469 121964 32 1 69 1 SRX2526861 Unrestricted 0.0 Metagenome 3300037508 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME22Sep2015-rr0134 DOE Joint Genome Institute (JGI) 3300037508 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1337710082 1933711 551 129 689 218 SRX9139777 Unrestricted 14.64 Metagenome 3300012259 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metalplastic -P00741 Weill Cornell Medical College 3300012259 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface City subway metal/plastic 40.72 -74.0 38204951 64214 31 0 45 0 SRX822708 0.0 Metagenome 3300061113 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIIF8SW PMA-treated Jet Propulsion Laboratory, California Institute of Technology 3300061113 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 4972817 5271 8 3 10 5 SRX3808530, SRX3244872, SRX3244865, SRX3808535 0.0 Metagenome 3300001525 *Microbiome Permanent Draft Primate fecal viral communities from Gombe National Park, Tanzania Chimp virome sample 4 3300001525 Metagenome Analysis IDBA-ud released by JGI data releasing policy No Yes yogeshwar.kelkar@yale.edu Yogeshwar Kelkar No Host-associated Mammals Large intestine Digestive system Fecal Primate fecal -4.4 29.38 304720290 577334 282 17 586 26 0.0 Metagenome 3300002461 *Microbiome Permanent Draft Freshwater microbial communities from a drinking water treatment plant in Ann Arbor, Michigan, USA Freshwater microbial communities from a drinking water treatment plant in Ann Arbor, Michigan, USA 3300002461 Metagenome Analysis IDBA-UD released per JGI data releasing policy No Yes dnmarc@umich.edu Daniel Marcus No Environmental Aquatic Drinking water Freshwater Unclassified Freshwater 42.296774 -83.762994 822941974 937084 227 3 305 2 0.0 Metagenome 3300040495 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Mixed forest soil microbial communities from Bartlett Experimental Forest, NH, USA - BART_004-O-27-36-20140619-GEN-DNA1 Argonne National Laboratory 3300040495 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Temperate forest Soil Bulk soil Mixed forest soil 44.06388 -71.28731 3611770 10706 23 3 45 4 ERX2133922 0.0 Metagenome 3300030219 *Microbiome Permanent Draft Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA - pen5 University of Minnesota 3300030219 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic River Freshwater Unclassified Freshwater 44.917867 -93.128967 4523201 4552 6 0 7 0 0.0 Metagenome 3300008097 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_DCM_ad_131m_LV_B (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300008097 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -0.4612 -23.033259 731315946 1522781 614 40 997 71 SRX2719400 Unrestricted 0.0 Metagenome 3300035490 *Microbiome Permanent Draft Soil microbial communities from Marcell Experimental Forest, Minnesota, USA Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog75 Georgia Institute of Technology 3300035490 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Terrestrial Unclassified Soil Unclassified Soil 47.5062 -93.45426667 601676164 1117458 163 5 291 4 0.0 Metagenome 3300014148 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - OS_PW_MetaG DOE Joint Genome Institute (JGI) 3300014148 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 57.4344 16.66 97053588 326057 62 1 92 1 SRX3603347 Unrestricted 240.96 Metagenome 2065487008 *Microbiome Permanent Draft Human fecal microbial communities from Baylor College of Medicine, Texas, USA, mock community Human fecal microbial communities from Baylor College of Medicine, Texas, USA, mock community - Mock Even Illumina 2009 SOAP Baylor College of Medicine 2065487008 Metagenome Analysis released per JGI data release policy No Yes xqin@bcm.tmc.edu Xiang Qin No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 29.7 -95.38 60413046 101041 49 0 78 0 0.0 Metagenome 3300070832 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_051-M-20190617-COMP-DNA1 3300070832 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 1368956 4811 31 2 44 5 0.0 Metagenome 3300064899 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 687 in Warspite, Alberta, Canada - S00JY_0659 Microbiome Insights 3300064899 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 54.0558482 -112.3659904 154097653 220860 86 3 181 3 0.0 Metagenome 3300049341 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CCF2 DOE Joint Genome Institute (JGI) 3300049341 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 356185315 950392 424 12 775 14 Unrestricted 7.35 Metagenome 3300002250 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP03-MA 3300002250 Metagenome Analysis released by victor No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300025473 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_13_10 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025473 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 234047205 472375 129 6 257 11 SRX3003641 Unrestricted 0.0 Metagenome 3300040200 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_027-M-20160803-COMP-DNA1 Battelle Memorial Institute 3300040200 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 10068487 30252 32 1 54 2 0.0 Metagenome 3300012842 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - DID2933_E24 MG DOE Joint Genome Institute (JGI) 3300012842 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie Yes 29545786 Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 108195268 141668 124 0 162 0 SRX3564714 Unrestricted 0.0 Metagenome 7000000096 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 508703490 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000096 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 10358293 22025 0 0 0 0 0.0 Metagenome 3300014535 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 7_12M Beijing Genomics Institute (BGI) 3300014535 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 108505624 124649 67 0 82 0 ERX491303 0.0 Metagenome 3300038625 *Microbiome Permanent Draft Freshwater microbial communities from various watersheds in Southwestern British Columbia, Canada Freshwater microbial communities from Southwestern British Columbia, Canada - APL_016 University of British Columbia 3300038625 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 49.0 -123.0 3594615 9325 12 0 23 0 0.0 Metagenome 3300035205 *Microbiome Permanent Draft Seawater and sediment microbial communities from various locations Seawater microbial communities from, Arabian Sea, Indian Ocean - AMALJGI-DNA-11 DOE Joint Genome Institute (JGI) 3300035205 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bbw@princeton.edu Bess Ward No Environmental Aquatic Oceanic Marine Unclassified seawater 15.15 64.0 1413235573 2760643 1045 99 1960 159 SRX8298593 Unrestricted 15.83 Metagenome 3300006446 *Microbiome Permanent Draft Microbial communities from manure storage tank from Sherbrooke, QC, Canada Microbial communities from pig manure storage tank from Sherbrooke, QC, Canada, enriched culture A7 Agriculture and Agri-Food Canada 3300006446 Metagenome Analysis Trinity released per JGI data release policy No Yes jennifer.town@agr.gc.ca, Jennifer.town@agr.gc.ca Jennifer Town No Engineered Solid waste Unclassified Animal waste Unclassified Manure 45.4 -71.9 42624625 76473 56 0 116 0 0.0 Metagenome 3300025294 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025294 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu; NNIvanova@lbl.gov Jeff Dangl; Natalia Ivanova No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.9082 -79.0499 559198395 837881 389 0 324 0 SRX3332972 Unrestricted 0.0 Metagenome 3300037791 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal raceway, Corpus Christi, Texas, United States - Pt17-4 DOE Joint Genome Institute (JGI) 3300037791 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mayali1@llnl.gov Xavier Mayali No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified phycosphere 27.6091 -97.3125 169271025 224310 76 1 115 1 SRX9140385 Unrestricted 66.18 Metagenome 3300048995 *Microbiome Permanent Draft Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA - CNF2ST6 DOE Joint Genome Institute (JGI) 3300048995 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sydneyg@ucr.edu Sydney Glassman No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 33.6953 -117.4713 1795805507 3104559 617 41 961 61 Unrestricted 15.7 Metagenome 3300020673 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 08JUL2008 epilimnion DOE Joint Genome Institute (JGI) 3300020673 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 3236138 9033 20 4 26 13 Unrestricted 0.0 Metagenome 3300007344 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 DOE Joint Genome Institute (JGI) 3300007344 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes chenf@umces.edu, chenf@umces.edu; bcampb7@clemson.edu Feng Chen, Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.12 -75.25 654128447 1545506 54 0 49 0 SRX3786009, SRX2838063, SRX3786010 Unrestricted 0.0 Metagenome 3300020338 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100001964 (ERX555920-ERR599099) CEA Genoscope 3300020338 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 14.2016 -116.696 332040856 720887 236 5 421 4 0.0 Metagenome 2222084004 *Microbiome Finished Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - oil_4 Alabama State University 2222084004 Metagenome Analysis GS de novo assembly released per JGI data release policy No Yes panoble@washington.edu Peter A Noble No Environmental Aquatic Oceanic Marine Oil-contaminated Marine 30.15 -88.446 7.8 30981804 86981 37 0 81 0 0.0 Metagenome 3300013322 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100678 University of Pennsylvania 3300013322 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4931871 14009 12 0 14 2 SRX756416 0.0 Metagenome 3300034107 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133 DOE Joint Genome Institute (JGI) 3300034107 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1323317900 2476323 445 174 604 283 SRX7622152 Unrestricted 11.83 Metagenome 3300011835 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00586 Weill Cornell Medical College 3300011835 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.73 -73.99 41695311 64282 27 0 31 0 SRX822553 0.0 Metagenome 3300026871 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 78 (SPAdes) DOE Joint Genome Institute (JGI) 3300026871 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 37658834 89675 69 0 116 0 SRX4341378 Unrestricted 0.0 Metagenome 3300013403 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100163 University of Pennsylvania 3300013403 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3480950 6115 11 5 22 7 SRX756369 0.0 Metagenome 3300045695 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_2_B DOE Joint Genome Institute (JGI) 3300045695 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 157994516 194020 97 1 111 2 Unrestricted 87.19 Metagenome 3300031333 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Organic Lake, Antarctica - #1 DOE Joint Genome Institute (JGI) 3300031333 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.457 78.1911 349595835 649362 102 30 139 32 SRX5329014 Unrestricted 53.82 Metagenome 3300061599 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - Jacob72 (version 2) DOE Joint Genome Institute (JGI) 3300061599 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Sand Soil Desert sand -78.1054 164.043 941753 3282 5 2 5 1 Unrestricted 314.78 Metagenome 3300039216 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 20-24 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300039216 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0469 893661582 1769055 479 26 780 29 SRX4415319, SRX8658333 Unrestricted 0.0 Metagenome 3300007923 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 737052003 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007923 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 786427 2480 6 0 9 0 SRX024172 0.0 Metagenome 3300025278 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP-82 (SPAdes) DOE Joint Genome Institute (JGI) 3300025278 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es; mbsulli@gmail.com Silvia G. Acinas; Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -25.4941 -179.5286 154754194 318453 97 1 144 4 SRX4915164 Unrestricted 0.0 Metagenome 3300021419 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Coastal seawater microbial communities from Marineland, Florida, United States - SWA TP2 #1 DOE Joint Genome Institute (JGI) 3300021419 Metagenome Analysis spades v. 3.11.1-check Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6703 -81.2145 386002076 582448 195 17 256 24 SRX3985497 Unrestricted 25.03 Metagenome 3300007669 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 158256496 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007669 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 170198033 222040 116 0 186 0 0.0 Metagenome 3300007136 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila neotestacea female 4 gut Cornell University 3300007136 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy Yes Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila neotestacea female adult gut 43.025606 -77.572811 91160154 284686 92 16 181 20 0.0 Metagenome 3300032013 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3 DOE Joint Genome Institute (JGI) 3300032013 Metagenome Analysis spades v. 3.13.0 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Bulk soil soil 39.6475 -79.9369 2642150213 6610764 1665 54 3082 115 SRX5809966 Unrestricted 7.37 Metagenome 3300055501 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.1C.11 SIP fraction DOE Joint Genome Institute (JGI) 3300055501 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 181340311 304081 198 18 318 33 Unrestricted 27.72 Metagenome 3300010053 *Microbiome Permanent Draft Insect gut microbial communities from Cryptocercus cockroaches from Viginia, USA Insect gut microbial communities from Cryptocercus cockroaches from Viginia, USA University of Barcelona 3300010053 Metagenome Analysis velvet released per JGI data release policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Arthropoda: Insects Gut Digestive system Unclassified intestinal tract 37.5 -79.0 144656856 255451 136 467 255 519 0.0 Metagenome 3300025712 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025712 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 499495318 994440 285 52 419 109 SRX2999545 Unrestricted 0.0 Metagenome 3300037142 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 P2 10-14 DOE Joint Genome Institute (JGI) 3300037142 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0473 1075699459 2177298 318 31 586 49 SRX8144917 Unrestricted 9.47 Metagenome 7000000129 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 159227541 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000129 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 10986896 16102 0 0 0 0 0.0 Metagenome 3300059783 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.725 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059783 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2 -123.94 228383717 486217 273 94 402 164 SRX2753515 Unrestricted 0.0 Metagenome 3300031880 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25 DOE Joint Genome Institute (JGI) 3300031880 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 858932283 2085397 363 2 609 7 SRX5820068 Unrestricted 12.26 Metagenome 3300003651 *Microbiome Permanent Draft Arsenic contaminated sediment microbial communities from Roteang Village, Cambodia, amended with 13C-lactate Arsenic contaminated sediment microbial communities from Roteang Village, Cambodia, amended with 13C-lactate 3300003651 Metagenome Analysis released by JGI data releasing policy No Yes a.rizoulis@manchester.ac.uk, arizoulis@gmail.com Athanasios Rizoulis No Environmental Terrestrial Unclassified Deep subsurface Unclassified Arsenic contaminated sediment 11.5044 105.0336 0 0 0 0 0 0 0.0 Metagenome 3300017660 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - LL13-06 University of Michigan 3300017660 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.41803 -85.44348 13464958 19246 14 1 17 3 0.0 Metagenome 3300026625 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_6_15 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026625 Metagenome Analysis spades v. 3.11.1 Yes Yes jim.fredrickson@pnnl.gov; binskeep@montana.edu Jim Fredrickson; William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.7315 -110.7113 3 11327386 29447 4 0 8 0 SRX2753792 Unrestricted 0.0 Metagenome 3300031694 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #231 DOE Joint Genome Institute (JGI) 3300031694 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5596 77.8957 875211492 1797257 326 154 394 239 SRX5650090 Unrestricted 0.0 Metagenome 3300021605 *Microbiome Permanent Draft Anoxic zone freshwater microbial communities from boreal shield lakes in IISD Experimental Lakes Area, Ontario, Canada Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L227-10m DOE Joint Genome Institute (JGI) 3300021605 Metagenome Analysis spades v. 3.11.1-check Yes Yes jneufeld@uwaterloo.ca Josh Neufeld No Environmental Aquatic Lake Freshwater Anoxic zone anoxic zone freshwater 49.688 -93.689 640154214 1400670 546 14 964 16 SRX3984571 Unrestricted 13.46 Metagenome 3300044773 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_177 DOE Joint Genome Institute (JGI) 3300044773 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 470732076 1107668 332 7 606 9 Unrestricted 7.98 Metagenome 3300013208 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100627 University of Pennsylvania 3300013208 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 23550508 54526 18 1 32 5 SRX756467 0.0 Metagenome 3300069244 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Lower Teakettle, Sierra National Forest, California, USA - TEAK_003-M-20210726-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069244 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 37.012962 -119.010619 2436610014 6468537 1782 209 3423 371 0.0 Metagenome 3300039331 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 582_M Beijing Genomics Institute (BGI) 3300039331 Metagenome Analysis Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 164228105 226724 129 0 231 0 ERX491234 0.0 Metagenome 3300043753 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Para, Brazil - F23 DOE Joint Genome Institute (JGI) 3300043753 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -2.8551 -54.9575 967737836 2507978 427 14 762 26 Unrestricted 8.77 Metagenome 3300013928 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01499 Weill Cornell Medical College 3300013928 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.99 23755870 36915 29 0 40 1 SRX823375 0.0 Metagenome 3300043061 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8WP15 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043061 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 65610351 142015 65 1 113 1 SRX8379805 Unrestricted 41.8 Metagenome 3300069422 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_022-M-20140917-COMP-DNA1 re-annotation Argonne National Laboratory 3300069422 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 31166496 89605 53 4 114 10 ERX2133996 0.0 Metagenome 3300008594 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158944319 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008594 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 114510135 178910 144 0 221 0 0.0 Metagenome 3300032561 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18011 DOE Joint Genome Institute (JGI) 3300032561 Metagenome Analysis spades v. 3.13.0 Yes Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.0411 -89.6861 720390448 1266197 384 57 541 66 SRX7891181 Unrestricted 18.32 Metagenome 3300031990 *Microbiome Permanent Draft Microbial communities from the deep biosphere Mediterranean forest soil microbial communities from Voltri Massif, Liguria, Italy - LIG_BR2_2013 re-assembly Marine Biological Laboratory 3300031990 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Terrestrial Temperate forest Soil Bulk soil Mediterranean forest soil 44.4512 8.782 90083556 227219 104 11 204 33 SRX748864 0.0 Metagenome 3300027396 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_8h DOE Joint Genome Institute (JGI) 3300027396 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 240918785 547861 200 19 340 35 SRX5245324 Unrestricted 12.41 Metagenome 3300060397 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210617_21_01 DOE Joint Genome Institute (JGI) 3300060397 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 410504265 610880 210 71 277 105 Unrestricted 36.4 Metagenome 3300025552 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025552 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.080353 -122.108833 182040325 367528 216 2 318 1 SRX7142765 Unrestricted 0.0 Metagenome 3300005590 *Microbiome Permanent Draft Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.2 DOE Joint Genome Institute (JGI) 3300005590 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jeremy.rich@maine.edu Jeremy Rich No Environmental Aquatic Coastal Marine Sediment Marine sediment 2176752473 5899893 1638 91 2771 167 SRX2837948 Unrestricted 0.0 Metagenome 3300029484 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001871-18 Beijing Genomics Institute (BGI) 3300029484 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 156657382 198726 128 0 192 0 0.0 Metagenome 3300015301 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_22AUG2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015301 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 144232440 276433 75 116 100 215 SRX3926166 Unrestricted 7.15 Metagenome 3300011802 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00562 Weill Cornell Medical College 3300011802 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.66 -73.93 32047282 60656 29 0 35 0 SRX822529 0.0 Metagenome 3300012677 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ012 MetaG DOE Joint Genome Institute (JGI) 3300012677 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.7096 -74.6638 248510028 462356 245 34 459 76 SRX3539440 Unrestricted 0.0 Metagenome 3300036546 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Shale gas microbial communities from Fort St. John, British Columbia, Canada - UGR 12 DOE Joint Genome Institute (JGI) 3300036546 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back shale gas 56.0 -122.0 202067474 335544 203 1 227 3 SRX8356884 Unrestricted 62.16 Metagenome 3300021973 *Microbiome Permanent Draft Characterization of microbial community from Mariana Back Arc Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Alice_FS923 _150kmer Marine Biological Laboratory 3300021973 Metagenome Analysis IDBA-UD 1.1.3 Trembath-Reichert et al. ?Active subseafloor microbial communities from Mariana back-arc venting fluids share metabolic strategies across different thermal niches and taxa?, ISMEJ 2019 No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Hydrothermal vent fluids 18.210325 144.707309 301773984 650691 297 26 493 49 0.0 Metagenome 3300015599 *Microbiome Permanent Draft Permafrost microbial communities from CRREL Tunnel near Fairbanks, Alaska Permafrost microbial communities from CRREL Tunnel near Fairbanks, Alaska - 12K California State University 3300015599 Metagenome Analysis idba_ud released by JGI data releasing policy No Yes anthony.thongsarn.87@my.csun.edu Anthony Thongsarn No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 64.951 -147.621 104610171 122633 33 2 38 4 0.0 Metagenome 3300002426 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP12-I1 3300002426 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300024351 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_0h DOE Joint Genome Institute (JGI) 3300024351 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 138993121 320172 169 18 255 27 SRX4547317 Unrestricted 12.95 Metagenome 3300027575 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027575 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 302034044 678578 166 74 355 108 SRX3312006 Unrestricted 0.0 Metagenome 3300038478 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 P1 1-5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300038478 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0471 951267007 1946170 372 42 652 72 SRX8138478, SRX8138477 Unrestricted 0.0 Metagenome 3300022430 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1BM2 JM77 AGRF 3300022430 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 63834531 105874 38 0 67 0 0.0 Metagenome 3300070805 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_045-M-20180718-COMP-DNA1 3300070805 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 9888209 32939 70 3 126 5 0.0 Metagenome 3300007801 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159753524 replicate 1 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007801 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 94941789 143415 95 0 131 1 0.0 Metagenome 3300034023 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090 DOE Joint Genome Institute (JGI) 3300034023 Metagenome Analysis metaspades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1281978033 2513793 714 162 1075 273 SRX7622044 Unrestricted 11.96 Metagenome 3300026273 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026273 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Permafrost Soil 68.6135 -149.3144 372382317 880498 303 10 484 16 SRX2739469 Unrestricted 0.0 Metagenome 3300032234 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime Ecozone, Canada - Lake 07-001 Genome Quebec 3300032234 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.347667 -62.528109 558495808 1092132 338 143 535 253 0.0 Metagenome 3300023371 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet fungal communities from Santa Barbara, California, USA - diluted pellet 1 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300023371 Metagenome Analysis spades v. 3.11.1-check Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4204 -119.6671 3650021135 6570629 4792 25 6578 41 SRX3963535 Unrestricted 15.43 Metagenome 3300044639 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME15Feb2019D0-rr0924 DOE Joint Genome Institute (JGI) 3300044639 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 922351584 1409634 233 62 277 85 Unrestricted 21.45 Metagenome 3300043513 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-302 Genome Quebec 3300043513 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.474369 -97.409451 1135745408 2647301 565 162 964 300 0.0 Metagenome 3300000174 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 60 08/10/11 200m DOE Joint Genome Institute (JGI) 3300000174 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 189981812 368628 140 0 255 0 Unrestricted 0.0 Metagenome 3300035232 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P4_June_2015_10m DOE Joint Genome Institute (JGI) 3300035232 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 48.65 -126.6666 593686264 1299603 340 34 497 71 SRX8195141 Unrestricted 16.89 Metagenome 3300014502 *Microbiome Permanent Draft Permafrost microbial communities from Stordalen Mire, Sweden Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300014502 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rich.270@osu.edu Virginia Rich Yes 30013118 Environmental Terrestrial Wetlands Soil Permafrost Fen 68.35 19.05 5741622169 11829695 3505 54 6042 102 SRX3903289, SRX3903288, SRX3903290, SRX3903292, SRX3903291, SRX3903294, SRX3903293 Unrestricted 6.93 Metagenome 3300026494 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A DOE Joint Genome Institute (JGI) 3300026494 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 200746391 502881 241 10 416 15 SRX4802252 Unrestricted 9.82 Metagenome 3300017964 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300017964 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1847860382 4002361 1510 97 2524 169 SRX4074070 Unrestricted 16.29 Metagenome 3300025554 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLB_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025554 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.197102 -122.010033 181204193 363901 184 4 300 7 SRX7142744 Unrestricted 0.0 Metagenome 3300035561 *Microbiome Permanent Draft Metagenomes form methanogenic light crude oil-degrading microbial community Lab-enriched produced water microbial community from an oilfield near Medicine Hat, Alberta, Canada - CrudeOil MSP University of Calgary 3300035561 Metagenome Analysis spades v. 3.12.0 released by JGI data releasing policy Yes Yes camillaln@gmail.com; courtney.toth@utoronto.ca Camilla Nesb?; Courtney Toth No Engineered Lab enrichment Anaerobic media Defined media Unclassified produced water 50.0333 -110.6667 194837869 352662 112 0 244 0 0.0 Metagenome 3300001961 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Coral reef microbial communities from Dirty Rock, Cocos Island, Costa Rica - GS025 J. Craig Venter Institute 3300001961 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Coral reef Marine 5.552778 -87.087776 88355364 163872 34 18 46 30 0.0 Metagenome 3300030398 *Microbiome Permanent Draft Acid mine drainage microbial biofilm communities from Richmond Mine, California, USA Acid mine drainage biofilm communities from Richmond mine site C75, Iron Mt, CA, USA - AMDC751008V3 University of California, Berkeley 3300030398 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 40.67542 -122.53025 23836282 31455 19 3 27 2 0.0 Metagenome 3300031370 *Microbiome Permanent Draft Leaf surface microbial communities from various plants in UC Gill Tract Community Farm, Albany, California, United States Leaf surface microbial communities from alfalfa plants in UC Gill Tract Community Farm, Albany, California, United States - DLSL A.R1 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031370 Metagenome Analysis spades v. 3.12.0 Yes Yes icelab@berkeley.edu Steven Lindow No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf surface 37.8864 -122.2981 482570090 833752 364 23 466 35 SRX5295434, SRX5295435 Unrestricted 0.0 Metagenome 3300027976 *Microbiome Permanent Draft Freshwater microbial communities from lake liftoff mats and glacier meltwater in Antarctica Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027976 Metagenome Analysis spades v. 3.11.1 Yes Yes slonczewski@kenyon.edu Joan Slonczewski No Environmental Aquatic Ice Freshwater Glacier meltwater Freshwater -77.605 163.163 1057267724 1743532 329 63 436 90 SRX2522339 Unrestricted 0.0 Metagenome 3300027731 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027731 Metagenome Analysis spades v. 3.11.1 Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0991 -99.1044 604898252 1318616 512 2 887 5 SRX2753776 Unrestricted 0.0 Metagenome 3300000626 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 12MAY2008 hypolimnion DOE Joint Genome Institute (JGI) 3300000626 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300052798 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_CL_028D DOE Joint Genome Institute (JGI) 3300052798 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0557 10.44641 294490978 731483 295 12 534 27 Unrestricted 10.05 Metagenome 3300012301 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100485 University of Pennsylvania 3300012301 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 7071008 18785 11 0 19 1 SRX756513 0.0 Metagenome 3300021393 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2016_3, 0.02 Toyama Prefectural University 3300021393 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Sediment marine 37.36076 137.95754 41162899 115734 15 0 40 4 0.0 Metagenome 3300029482 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001875-22 Beijing Genomics Institute (BGI) 3300029482 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 156730072 197301 128 0 201 0 0.0 Metagenome 3300031245 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4 DOE Joint Genome Institute (JGI) 3300031245 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 368404207 717367 224 0 296 0 SRX5650895 Unrestricted 334.35 Metagenome 3300011804 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00784 Weill Cornell Medical College 3300011804 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.79 -73.94 25843570 32304 11 0 10 0 SRX822750 0.0 Metagenome 3300012599 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100633 University of Pennsylvania 3300012599 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14807552 39963 24 0 40 0 SRX756461 0.0 Metagenome 3300001041 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Groundwater microbial communities from Rifle, Colorado, USA - Groundwater D2 DOE Joint Genome Institute (JGI) 3300001041 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 26083755 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 39.53 -107.78 151598256 311998 154 0 272 4 SRX764829, SRX1668433 Unrestricted 0.0 Metagenome 3300005426 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV74 DOE Joint Genome Institute (JGI) 3300005426 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 602816063 1510266 704 20 1153 23 SRX2782316 Unrestricted 0.0 Metagenome 3300006261 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764588959 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006261 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 62140761 86509 46 0 55 0 0.0 Metagenome 3300025430 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Jul09 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025430 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 176931104 351072 113 15 146 27 SRX2565945 Unrestricted 0.0 Metagenome 3300012113 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT100_2 DOE Joint Genome Institute (JGI) 3300012113 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9224 -106.9514 65187736 167176 176 11 419 34 SRX3368484 Unrestricted 0.0 Metagenome 3300003363 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - Phoenix Before-Phoenix assembly at KSC-PHSF (megahit assembly) DOE Joint Genome Institute (JGI) 3300003363 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes nnivanova@lbl.gov, NNIvanova@lbl.gov; nnivanova@lbl.gov Natasha Ivanova, Natalia Ivanova; Natasha Ivanova No Engineered Built environment Unclassified Spacecraft Assembly Cleanrooms Unclassified Clean room 28.5853 -80.6508 80391179 179796 6 3 13 8 Unrestricted 0.0 Metagenome 3300038381 *Microbiome Permanent Draft Diffuse flow microbial communities from hydrothermal vent near Loihi Seamount, Hawaii, USA Diffuse flow microbial communities from hydrothermal vent near Loihi Seamount, Hawaii, USA - 23 The Marine Biological Laboratory 3300038381 Metagenome Analysis IDBA-UD v. 1.1.3 released by JGI data releasing policy No Yes asmith@simons-rock.edu Amy Smith No Environmental Aquatic Hydrothermal vents Marine Unclassified Diffuse Flow 18.92 -155.27 5-6 200442813 292195 213 7 352 20 0.0 Metagenome 3300009629 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_11_100 DOE Joint Genome Institute (JGI) 3300009629 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 304625436 544940 211 3 327 7 SRX3003286 Unrestricted 0.0 Metagenome 3300029160 *Microbiome Permanent Draft Infant fecal microbial communities from Pittsburgh, USA Infant fecal microbial communities from Pittsburgh, USA - NECEvent2014_5_6 Banfield Lab, University of California, Berkeley 3300029160 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant fecal 40.4308 -79.9598 27963384 32228 51 0 40 0 0.0 Metagenome 3300035234 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P4_June_2018_1000m DOE Joint Genome Institute (JGI) 3300035234 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 48.65 -126.6666 451250164 1081239 439 39 665 73 SRX8195237 Unrestricted 14.39 Metagenome 7000000288 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159510762 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000288 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 170625023 304260 0 0 0 0 0.0 Metagenome 3300006450 *Microbiome Permanent Draft Minimetagenome of a non-axenic cylindrospermopsis culture from a freshwater lake in Singapore Minimetagenome of a non-axenic cylindrospermopsis culture from a freshwater lake in Singapore Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300006450 Metagenome Analysis CLC Genomics Workbench 8 released per JGI data release policy No Yes boonfei@ualberta.ca BOONFEI TAN No Environmental Aquatic Lake Freshwater Unclassified freshwater lake 1.3991438 103.77518 86447036 95776 22 0 27 0 0.0 Metagenome 3300014504 *Microbiome Permanent Draft Deep-sea hydrothermal vent sediment bacterial and viral communities from Southwest Indian Ocean Deep-sea hydrothermal vent sediment bacterial and viral communities from Southwest Indian Ocean - SWIR-S021-M Zhejiang University 3300014504 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Sediment Deep-sea hydrothermal vent sediment -37.88 49.66 3907367 8920 1 1 0 3 0.0 Metagenome 3300036945 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Shale gas microbial communities from Fort St. John, British Columbia, Canada - UGR 46 DOE Joint Genome Institute (JGI) 3300036945 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back shale gas 56.0 -122.0 539635141 1106118 349 57 490 129 SRX8356778 Unrestricted 16.91 Metagenome 3300026492 *Microbiome Permanent Draft Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 CS5 DOE Joint Genome Institute (JGI) 3300026492 Metagenome Analysis spades v. 3.11.1 Yes Yes ccraft@indiana.edu Chris Craft No Environmental Aquatic Wetlands Freshwater Sediment sediment 31.3377 -81.4644 179765597 498913 359 4 691 6 SRX4796412 Unrestricted 6.95 Metagenome 3300017962 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300017962 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1740565750 3830054 1199 79 2047 112 SRX4072137 Unrestricted 16.76 Metagenome 3300028710 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380 DOE Joint Genome Institute (JGI) 3300028710 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92048757 -106.94878552 546084576 1477286 451 28 874 45 SRX5355417 Unrestricted 10.59 Metagenome 3300070563 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_041-O-20170719-COMP-DNA1 Battelle Memorial Institute 3300070563 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 68.666666 -149.369752 4.78-5.69 46763933 127300 103 11 203 10 0.0 Metagenome 3300032232 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada - Lake 06-198 Genome Quebec 3300032232 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.187271 -80.971159 504872598 1086360 275 112 508 208 0.0 Metagenome 3300056811 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - APS1_2C_TP2_16O DOE Joint Genome Institute (JGI) 3300056811 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 2035719769 2620461 605 55 727 71 Unrestricted 32.93 Metagenome 3300021158 *Microbiome Permanent Draft Freshwater planktonic and plastic biofilm microbial communities in Lake Erie, USA Freshwater plastic biofilm microbial communities near Erie Pennsylvania WWTP outflow, Lake Erie, USA - MD2014-0189C University of Michigan 3300021158 Metagenome Analysis Megahit v1.1.1 released by JGI data releasing policy No Yes gumm@umich.edu Jordan Gumm No Environmental Aquatic Lake Freshwater Unclassified lake plastic biofilm near wastewater outflow 42.15 -80.06 40903144 50593 4 1 2 1 0.0 Metagenome 3300002246 *Microbiome Permanent Draft Enriched soil microbial communities from the University of Wisconsin-Madison, USA, enriched with a pyrite oxidizing culture Enriched soil microbial communities from the University of Wisconsin-Madison, USA, enriched with a pyrite oxidizing culture - Isolate from a Neutral pH aerobic pyrite oxidizing enrichment 3300002246 Metagenome Analysis released by JGI data releasing policy No Yes Eric Roden; Shaomei He No Environmental Terrestrial Sediment Geologic Pyrite containing Enriched soil 46.547528 -119.521866 6014108 6288 1 0 1 0 0.0 Metagenome 3300000172 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 200m DOE Joint Genome Institute (JGI) 3300000172 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 201262566 388542 151 3 276 1 Unrestricted 0.0 Metagenome 3300023488 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_18B University of California, Irvine 3300023488 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 89253130 86903 12 0 16 0 0.0 Metagenome 3300014123 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - In3P-11 SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300014123 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1 -118.1 12523442 18251 26 6 20 10 SRX5057085 Unrestricted 0.0 Metagenome 3300025714 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC085_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025714 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 39.88 -75.22 559791615 1003218 513 4 773 5 SRX2157907 Unrestricted 0.0 Metagenome 3300037144 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 P3 1-5 DOE Joint Genome Institute (JGI) 3300037144 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3535 19.0473 894327692 1768203 341 4 571 8 SRX8144967 Unrestricted 8.14 Metagenome 3300027857 *Microbiome Permanent Draft Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027857 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade Yes 30397342 Environmental Terrestrial Unclassified Soil Unclassified Surface soil 40.7999 -76.3402 1359741791 2837012 632 50 1055 92 SRX2837960 Unrestricted 0.0 Metagenome 3300036786 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in California, United States - CAC_10 DOE Joint Genome Institute (JGI) 3300036786 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil 35.5 -121.0 2466196192 3970665 593 107 924 158 SRX8384159 Unrestricted 13.05 Metagenome 3300047658 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BT18-01redo_D0 (version 2) DOE Joint Genome Institute (JGI) 3300047658 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3555 19.0492 310337003 524691 146 12 237 21 Restricted 0.0 Metagenome 3300035013 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Trichocoleus desertorum ATA4-8-CV12 and co-occurring heterotrophs from soil from Atacama Desert, Chile - 20181128_60 DOE Joint Genome Institute (JGI) 3300035013 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Soil crust Soil Biological Soil -27.2216 -70.3454 23313734 26592 7 1 12 2 SRX8239050 Unrestricted 447.76 Metagenome 3300041922 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS917_Marker33_DNA re-assembly Marine Biological Laboratory 3300041922 Metagenome Analysis IDBA_UD v. 1.1.3 released by JGI data releasing policy No Yes jhuber@whoi.edu; randerson@carleton.edu; cfortunato@gmail.com; elks@mit.edu Julie Huber; Rika Anderson; Caroline Fortunato; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse vent fluid, hydrothermal vents 45.93316 -129.9822 507537381 1031431 780 15 1328 21 0.0 Metagenome 3300033427 *Microbiome Permanent Draft Wetland soil microbial communities from various locations Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - Kosokonia_enrich_dilutions DOE Joint Genome Institute (JGI) 3300033427 Metagenome Analysis spades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified soil 41.3777 -82.5117 7622878 13558 18 0 23 0 SRX6871088 Unrestricted 9831.33 Metagenome 3300001133 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 3 DOE Joint Genome Institute (JGI) 3300001133 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 25647349 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.53 -107.78 12770070 39090 104 1 174 1 SRX1983744 Unrestricted 0.0 Metagenome 3300019924 *Microbiome Permanent Draft Hypersaline water viral communities from Tuz Lake and Camalt? Saltern, Turkey Non-marine hypersaline water viral communities from Tuz Lake, Turkey - salt sample University of Alicante 3300019924 Metagenome Analysis IDBA_1.1.1 PRE_correction released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Alkaline Non-marine Saline and Alkaline Unclassified hipersaline lake salt 38.7627 33.3486 29544649 80886 13 0 0 0 0.0 Metagenome 3300043401 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from West St. Louis Creek, Fraser, Colorado, USA - weststlouiscreek_2019_sw_WHONDRS-S19S_0027 DOE Joint Genome Institute (JGI) 3300043401 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 39.8907 -105.9116 38414577 70761 136 26 284 54 Unrestricted 54.63 Metagenome 3300069242 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Yellowstone NP, Wyoming, USA - YELL_009-M-20210706-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069242 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 44.970313 -110.501884 1986905664 4778529 1403 131 2622 206 0.0 Metagenome 3300039796 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_009-O-20170621-COMP-DNA1 Battelle Memorial Institute 3300039796 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 33392673 85040 32 5 74 10 0.0 Metagenome 3300007068 *Microbiome Permanent Draft Cephalotes ants gut microbiomes Ant gut microbial communities from Cephalotes simillimus, Peru Harvard University 3300007068 Metagenome Analysis IDBA-UD released by Yi Hu Yes Yes pl356@drexel.edu, yihu.bnu@gmail.com Piotr Lukasik, Yi Hu No Host-associated Arthropoda: Insects Gut Digestive system Unclassified ant gut -12.5 -70.1 92278236 183099 33 2 55 2 0.0 Metagenome 3300031692 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-30 DOE Joint Genome Institute (JGI) 3300031692 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh sediment 42.722 -70.847 554257877 1102416 471 1 727 6 SRX6458650 Unrestricted 8.41 Metagenome 3300028550 *Microbiome Finished Marine viral communities from South Scotia Ridge, Antarctic Ocean Marine viral communities from South Scotia Ridge, Antarctic Ocean - SST-2 Beijing Novogene Bioinformatics Technology Co., Ltd 3300028550 Metagenome Analysis idba v. 1.1.2 released by JGI data releasing policy Yes Yes foodyqw_12@163.com Yang Qingwei No Environmental Aquatic Oceanic Marine Unclassified marine -61.32 -54.12 225585379 343740 79 111 81 125 0.0 Metagenome 3300007948 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 160380657 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007948 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 1046159 2759 1 0 2 0 SRX023027, SRX023026 0.0 Metagenome 3300069424 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_003-M-20130726-COMP-DNA1 re-annotation Argonne National Laboratory 3300069424 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 4724384 14872 32 3 61 2 0.0 Metagenome 3300037211 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 711 E-2-S DOE Joint Genome Institute (JGI) 3300037211 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0465 387684627 954048 371 11 683 12 SRX8146557 Unrestricted 6.14 Metagenome 3300007015 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - engineered for negative control 4 Cornell University 3300007015 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy Yes Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Engineered Unclassified Unclassified Unclassified Unclassified Negative control 42.445525 -76.480787 40841052 51880 25 6 27 4 0.0 Metagenome 3300015259 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_10D DOE Joint Genome Institute (JGI) 3300015259 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9229 -106.9517 408262108 869923 265 8 513 15 SRX3780498 Unrestricted 4.67 Metagenome 3300006226 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Microcerotermes parvus P3 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P3 DOE Joint Genome Institute (JGI) 3300006226 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, NNIvanova@lbl.gov; brune@mpi-marburg.mpg.de Natasha Ivanova, Natalia Ivanova; Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut -4.7 11.83 3211497060 6595900 1365 13 2405 20 SRX3328922 0.0 Metagenome 3300026230 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Colorado-Nebraska, USA - DC3-106 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026230 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 38200586 70160 40 18 47 28 SRX2770438 Unrestricted 0.0 Metagenome 3300070834 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_054-M-20200707-COMP-DNA1 3300070834 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 16441852 53040 62 8 96 11 0.0 Metagenome 3300005461 *Microbiome Permanent Draft Mouse cecum microbial communities from Vienna, Austria Mouse cecum microbial communities from Vienna, Austria - Inoculum for glucosamine and mucus D2O microcosms DOE Joint Genome Institute (JGI) 3300005461 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes wagner@microbial-ecology.net, wagner@microbial-ecology.net; romans@mit.edu Michael Wagner, Michael Wagner; Roman Stocker No Host-associated Mammals Large intestine Digestive system Cecum Mouse cecum 48.2 16.37 587582577 1005072 1385 7 2121 8 SRX2838880 Unrestricted 0.0 Metagenome 3300053103 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere DOE Joint Genome Institute (JGI) 3300053103 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.587973 -123.19406 357059054 676353 254 39 360 62 Unrestricted 0.0 Metagenome 3300009131 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1 DOE Joint Genome Institute (JGI) 3300009131 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 29146959 Environmental Aquatic Wetlands Freshwater Sediment Wetland 41.224 -82.304 2309030813 4918483 1695 33 3057 51 SRX2761411 Unrestricted 0.0 Metagenome 3300017787 *Microbiome Permanent Draft Polar desert microbial communities from Antarctic Dry Valleys Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017787 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes caryc@udel.edu Stephen Cary No Environmental Terrestrial Desert Soil Unclassified Polar desert sand -78.0827 164.1679 1750641913 3620202 1024 8 1617 5 SRX3048890, SRX3048891, SRX3048889 Unrestricted 0.0 Metagenome 3300028786 *Microbiome Permanent Draft Soil and ectomycorrhiza microbial communities from Populus trichocarpa stands in riparian zones in the Pacific Northwest, United States Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM DOE Joint Genome Institute (JGI) 3300028786 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Plants Unclassified Roots Unclassified ectomycorrhiza 48.4473 -122.323 1738859743 3044471 384 115 663 146 SRX5650779 Unrestricted 29.55 Metagenome 3300048596 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Soil microbial communities from Washington Gulch, Colorado, USA - LS_R_07192018 DOE Joint Genome Institute (JGI) 3300048596 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.95 -107.03 1227787267 2203211 507 47 894 67 Unrestricted 16.97 Metagenome 3300011341 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100204 University of Pennsylvania 3300011341 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 114636 265 4 0 1 0 SRX756695 0.0 Metagenome 3300022473 *Microbiome Permanent Draft Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain - individual 2 Autonomous University of Barcelona 3300022473 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.38 -0.51 14268001 17389 25 0 35 0 0.0 Metagenome 3300025292 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025292 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 376569731 562710 152 0 159 0 SRX2770677 Unrestricted 0.0 Metagenome 3300002001 *Microbiome Permanent Draft Permafrost and active layer soil microbial communities from McGill Arctic Research Station (MARS), Canada, for enrichment studies Permafrost and active layer soil microbial communities from McGill Arctic Research Station (MARS), Canada, for enrichment studies - Sample_4Y 3300002001 Metagenome Analysis released by JGI data releasing policy No Yes Tullis Onstott; Tatiana Vishnivetskaya; Karuna Chourey; Susan M. Pfiffner;Alice Layton No Environmental Terrestrial Unclassified Soil Permafrost Permafrost and active layer soil 79.26 -90.46 11658736 13851 67 0 97 0 0.0 Metagenome 3300012844 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched soil microbial communities from UW Madison campus, WI, USA - HID1975M_E11 MG DOE Joint Genome Institute (JGI) 3300012844 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Unclassified Soil Unclassified soil 43.073 -89.4011 107763316 150959 103 0 139 0 SRX3564710 Unrestricted 0.0 Metagenome 3300032205 *Microbiome Permanent Draft Hardwood forest soil microbial communities from various locations in the United States Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05 DOE Joint Genome Institute (JGI) 3300032205 Metagenome Analysis spades v. 3.13.0 Yes Yes jdraff@indiana.edu Jonathan Raff No Environmental Terrestrial Temperate forest Soil Bulk soil hardwood forest soil 39.0844 -86.4705 5094959092 12796585 1849 42 3279 99 SRX6409953 Unrestricted 7.53 Metagenome 3300024929 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 100_LOW12 (SPAdes) DOE Joint Genome Institute (JGI) 3300024929 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 55529053 88114 35 0 38 0 SRX2721174 Unrestricted 0.0 Metagenome 3300013324 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100726 University of Pennsylvania 3300013324 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 7793636 18044 18 10 44 18 SRX756124 0.0 Metagenome 3300035526 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B1.2_Sample1.Rodeo2.Well665 DOE Joint Genome Institute (JGI) 3300035526 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 125202588 211600 130 0 202 0 SRX8346943 Unrestricted 120.48 Metagenome 3300006863 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA DOE Joint Genome Institute (JGI) 3300006863 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 133260523 309962 109 8 217 14 SRX2851470 Unrestricted 0.0 Metagenome 3300013751 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S14-02-D University of California, Los Angeles 3300013751 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 144041899 212246 121 0 151 0 SRX869993 0.0 Metagenome 3300037336 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Clear Lake #997 DOE Joint Genome Institute (JGI) 3300037336 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.6371 77.9911 484080989 903894 366 110 537 159 SRX9378925 Unrestricted 14.54 Metagenome 3300001926 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from the Tropical South Pacific Ocean - GS042 J. Craig Venter Institute (JCVI) 3300001926 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Oceanic Marine Unclassified Marine -7.1075 -116.11916 542583 953 0 0 1 0 0.0 Metagenome 3300007760 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate a Georgia Genomics Facility 3300007760 Metagenome Analysis IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 348400168 442977 119 43 142 64 0.0 Metagenome 3300060285 *Microbiome Permanent Draft Sediment microbial communities from the PNNL SFA Hanford 300 Area, Columbia River, WA, USA Sediment microbial communities from in situ POM Reactor at the PNNL SFA Hanford 300 Area, Columbia River, WA, USA - Unashed with POM Time Zero DOE Joint Genome Institute (JGI) 3300060285 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes eroden@geology.wisc.edu Eric Roden No Environmental Aquatic River Freshwater Sediment Sediment 46.467778 -119.464444 1696821566 2259104 569 82 788 152 Unrestricted 23.99 Metagenome 3300014771 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 566_12M Beijing Genomics Institute (BGI) 3300014771 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 119479332 156406 82 0 121 0 ERX491211 0.0 Metagenome 3300014936 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 608_12M Beijing Genomics Institute (BGI) 3300014936 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 95870407 121515 53 0 67 0 ERX491263 0.0 Metagenome 3300042695 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jul2015-rr0470 DOE Joint Genome Institute (JGI) 3300042695 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1120874723 1770282 384 61 532 96 Unrestricted 26.51 Metagenome 3300000661 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 1 DOE Joint Genome Institute (JGI) 3300000661 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 1876340 5970 15 0 32 0 SRX4338203 Unrestricted 0.0 Metagenome 3300061677 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0581 Microbiome Insights 3300061677 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 139990100 205562 106 11 208 30 0.0 Metagenome 3300013943 *Microbiome Permanent Draft Fecal viral communites from wild urban brown rats in Berlin, Germany Fecal viral communites from wild urban brown rats in Berlin, Germany - Mu/10/1796 Freie University Berlin 3300013943 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 52.529611 13.401343 645663 1684 0 0 0 0 SRX616527 0.0 Metagenome 3300017769 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 5 SPOT_SRF_2009-10-22 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017769 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 451258975 998599 185 48 315 80 SRX5471789, SRX5471788, SRX5471787 Unrestricted 0.0 Metagenome 3300004164 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 37_LOW7 DOE Joint Genome Institute (JGI) 3300004164 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 82602774 195663 40 0 76 1 SRX2720521 Unrestricted 0.0 Metagenome 3300045303 *Microbiome Permanent Draft Forest soil microbial communities from boreal-temperate forests in Minnesota, USA Forest soil microbial communities from Hubachek Wilderness Research Center, Ely, Minnesota, USA - Ely DRY CO L1 DOE Joint Genome Institute (JGI) 3300045303 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pankaj.trivedi@colostate.edu Pankaj Trivedi No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 47.55 -92.3 879161629 1488366 320 16 582 25 Unrestricted 16.87 Metagenome 3300014007 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00395 Weill Cornell Medical College 3300014007 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.97 19995896 28075 8 0 18 0 SRX822366 0.0 Metagenome 3300029391 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 094_4_30_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029391 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 200813436 256108 216 1 252 3 0.0 Metagenome 3300022919 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L119-311C-1 DOE Joint Genome Institute (JGI) 3300022919 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 726923592 1478714 593 134 868 203 SRX4801552 Unrestricted 12.02 Metagenome 3300042242 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D278_3 DOE Joint Genome Institute (JGI) 3300042242 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 242075729 387719 236 11 355 20 Unrestricted 80.69 Metagenome 3300040176 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_047-O-20170621-COMP-DNA1 Battelle Memorial Institute 3300040176 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 8254921 24080 18 5 43 10 0.0 Metagenome 3300029509 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005369-33 Beijing Genomics Institute (BGI) 3300029509 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 120562685 152088 91 0 171 0 0.0 Metagenome 3300009043 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T14 (2) BES Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2) Shell Corporation 3300009043 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 121624824 432424 138 2 305 6 0.0 Metagenome 3300070327 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_003-M-20190715-COMP-DNA1 3300070327 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 13422710 41277 39 5 87 9 0.0 Metagenome 3300045244 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_1_C DOE Joint Genome Institute (JGI) 3300045244 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 102189748 128889 53 0 94 0 Unrestricted 117.42 Metagenome 3300005815 *Microbiome Permanent Draft Microbial communities of produced water from Jiangsu Oil field in Yangzhou, China Microbial communities of produced water from Jiangsu Oil field in Yangzhou, China - Well_W9 University of California, San Diego 3300005815 Metagenome Analysis SPADES released per JGI data release policy No Yes ddgalzerani@eng.ucsd.edu Daniela Galzerani No Environmental Terrestrial Produced water Oil reservoir Unclassified Petroleum reservoir 32.0 119.0 20635737 49028 68 0 111 0 0.0 Metagenome 3300020445 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087) CEA Genoscope 3300020445 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 6.3354 -103.0345 1343253992 3342077 574 77 994 129 0.0 Metagenome 3300044730 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME23Sep2016-rr0978 DOE Joint Genome Institute (JGI) 3300044730 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1306636973 1945300 490 95 643 144 Unrestricted 17.47 Metagenome 3300042859 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381 NMDC pilot DOE Joint Genome Institute (JGI) 3300042859 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92048757 -106.94878552 965265444 2269485 519 5 900 9 SRX5355419 0.0 Metagenome 3300005868 *Microbiome Permanent Draft Rhizosphere and bulk soil microbial communities from Harvard Forest, USA Rhizosphere microbial communities from Harvard Forest, USA - 5Rhizosphere_NRneg metaG DOE Joint Genome Institute (JGI) 3300005868 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes deangelis@microbio.umass.edu Kristen M DeAngelis PhD, Kristen M. DeAngelis PhD No Host-associated Plants Rhizosphere Roots Soil rhizosphere 42.5502 -72.1737 1266969 5627 7 0 10 4 SRX2718159 Unrestricted 0.0 Metagenome 3300045422 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Mississippi River, Iowa, USA - NASQAN2010_121 DOE Joint Genome Institute (JGI) 3300045422 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 41.7805 -90.252 74170118 220002 162 24 271 43 Unrestricted 0.0 Metagenome 3300009963 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 9 Autonomous University of Barcelona 3300009963 Metagenome Analysis SPAdes-3.8.1-Linux released per JGI data release policy Yes Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 8332969 15171 4 0 3 0 0.0 Metagenome 3300041729 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_168 MetaG AgResearch, New Zealand, Mosgeil 3300041729 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1586704622 3137650 351 32 1075 49 0.0 Metagenome 3300008254 *Microbiome Permanent Draft Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico and Hudson Canyon, USA Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN4B Hudson Canyon DOE Joint Genome Institute (JGI) 3300008254 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mcredmond@uncc.edu Molly C. Redmond No Environmental Aquatic Cold seeps Marine Unclassified Methane seep mesocosm 39.54 -72.41 534822864 1141914 1544 1 2711 0 SRX2754427 Unrestricted 0.0 Metagenome 3300006037 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_>0.8_DNA DOE Joint Genome Institute (JGI) 3300006037 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 457169095 1514020 583 196 944 374 SRX2854047 Unrestricted 0.0 Metagenome 7000000483 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763901136 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000483 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 19269459 37789 0 0 0 0 0.0 Metagenome 3300034048 *Microbiome Permanent Draft Metagenome from bioreactors working in AMD treatment Acid mine drainage microbial communities from passive bioreactor in Bogota, Colombia - C1Bx Illumina 3300034048 Metagenome Analysis MEGAHIT v. 1.0.2 released by JGI data releasing policy No Yes mvillegas@microbiomas.org Marcela Villegas No Engineered Bioreactor Unclassified Anaerobic Unclassified Acid Mine Drainage 4.624335 -74.063644 6.2 43759576 105701 144 6 242 6 0.0 Metagenome 3300046709 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 soil DOE Joint Genome Institute (JGI) 3300046709 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.120803 -123.271378 5.48 659529045 1111239 260 15 458 31 Unrestricted 12.7 Metagenome 3300025645 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes) (version 4) DOE Joint Genome Institute (JGI) 3300025645 Metagenome Analysis spades v. 3.11.1 Yes Yes chenf@umces.edu; bcampb7@clemson.edu Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.12 -75.25 365105421 790614 104 7 124 15 SRX3786004, SRX3786005, SRX2838768 Unrestricted 0.0 Metagenome 3300028065 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK26 DOE Joint Genome Institute (JGI) 3300028065 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 127380930 333986 248 26 434 33 SRX5245481 Unrestricted 7.42 Metagenome 3300040622 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_001-M-25-38-20130701-GEN-DNA1 Argonne National Laboratory 3300040622 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 1302720 4329 25 0 39 3 ERX2134030 0.0 Metagenome 3300023283 *Microbiome Permanent Draft Solar saltern microbial communities from the Namib Desert Sediment microbial communities from solar saltern in the Namib Desert, Gobabeb, Namibia - Hosabes sink 2017 Genewiz Inc. 3300023283 Metagenome Analysis SPAdes v. 3.6.0 released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat and sediment -23.5071667 15.07155556 7.9-8 814973479 1040053 237 5 333 4 0.0 Metagenome 3300002777 *Microbiome Permanent Draft Mangrove soil microbial communities from Brazil, analyzing biochemical cycles METATRANSCRIPTOMICS AND GENOMIC CONTEXT IN MICROBIAL COMMUNITIES INVOLVED IN THE BIOGEOCHEMICAL CYCLES IN MANGROVES 3300002777 Metagenome Analysis released by JGI data releasing policy No Yes dias147@gmail.com Armando Dias No Environmental Terrestrial Sand Soil Unclassified Mangrove soil 6 71025 77 0 0 0 0 0.0 Metagenome 3300013837 *Microbiome Permanent Draft Fecal viral communites from wild urban brown rats in Berlin, Germany Fecal viral communites from wild urban brown rats in Berlin, Germany - Mu/10/1805 Freie University Berlin 3300013837 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 52.529611 13.401343 2300007 5510 2 0 9 0 SRX616523 0.0 Metagenome 3300026381 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T-25 DOE Joint Genome Institute (JGI) 3300026381 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 133220682 298331 144 10 269 14 SRX4550065, SRX7705820 Unrestricted 0.0 Metagenome 3300009806 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S1_50_60 DOE Joint Genome Institute (JGI) 3300009806 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen Yes 29920461 Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228249 -119.2718117 129433488 302883 200 3 369 8 SRX2523279 Unrestricted 0.0 Metagenome 3300036710 *Microbiome Draft Lab enriched sediment microbial communities from Bremen, Germany Lab enriched sediment microbial communities from pond in Bremen, Germany - BP MEGAHIT CeGaT 3300036710 Metagenome Analysis MEGAHIT v. 1.1.3 released by Yu-Ming Huang No Yes yu-ming.huang@outlook.com Yu-Ming Huang Yes 34218232 Environmental Aquatic Pond Freshwater Sediment Freshwater sediment 53.110315 8.847388 57442683 75830 34 0 44 0 0.0 Metagenome 3300038492 *Microbiome Permanent Draft Aquariaum water viral communities from Chicago, USA Aquariaum water viral communities from Chicago, USA - Wild Reef - WR2 Michigan State University 3300038492 Metagenome Analysis Yes Yes No Environmental Aquatic Unclassified Aquaculture Unclassified Aquarium water 41.87 -87.61 54265705 132409 62 3 209 3 0.0 Metagenome 3300045111 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - AT1-8-2-19 DOE Joint Genome Institute (JGI) 3300045111 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.3025 -120.5663 398256037 1070427 475 31 830 56 Restricted 7.0 Metagenome 3300020506 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020506 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 80859175 191095 82 1 131 2 SRX1989916 Unrestricted 0.0 Metagenome 3300034968 *Microbiome Finished Coastal sediment microbial communities from Western Antarctica Coastal sediment microbial communities from Western Antarctica - 7_event75 Megahit 75 Michigan State University 3300034968 Metagenome Analysis Megahit v. 1.1 released by Deric Learman No Yes deric.learman@cmich.edu Deric Learman No Environmental Aquatic Coastal Marine Sediment marine sediment -76.2003 -170.5103 229866296 478667 159 52 310 89 0.0 Metagenome 3300025057 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025057 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 28.867 -90.467 79324127 151530 25 0 29 0 Unrestricted 0.0 Metagenome 3300037813 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18B_5_8_9 mgh University of Alberta 3300037813 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 35481930 45949 11 2 22 2 0.0 Metagenome 3300049179 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - A26_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049179 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 97274062 227573 237 9 439 11 Unrestricted 0.0 Metagenome 3300028018 *Microbiome Permanent Draft Extreme environments viral communities from various locations Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 1600m DOE Joint Genome Institute (JGI) 3300028018 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Bathypelagic Marine Unclassified seawater 34.0321 27.821 122076620 312540 7 5 21 9 SRX5249018 Unrestricted 60.96 Metagenome 3300002484 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - ETNP_2_130 DOE Joint Genome Institute (JGI) 3300002484 Metagenome Analysis Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 18.92 -108.7999 223737405 516191 15 0 30 4 SRX3330650 Unrestricted 0.0 Metagenome 3300020429 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000614 (ERX556134-ERR599032) CEA Genoscope 3300020429 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 0.0328 -153.705 1037753793 2547665 501 50 902 102 0.0 Metagenome 3300055009 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_160817.NP1 DOE Joint Genome Institute (JGI) 3300055009 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 452533736 1046468 420 66 633 109 Restricted 0.0 Metagenome 3300001789 *Microbiome Permanent Draft Biogas reactor microbial communities from the Max Planck Institute, Germany BioPara_130528_S2 3300001789 Metagenome Analysis released by JGI data releasing policy No Yes sneulinger@ifam.uni-kiel.de Sven Neulinger, Sven C. Neulinger No Engineered Solid waste Composting Grass Bioreactor Biogas reactor 194813313 840687 199 10 760 36265 0.0 Metagenome 3300043587 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 094-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043587 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9281 -106.9737 447452560 1226540 426 50 825 101 Unrestricted 7.9 Metagenome 3300050015 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 P1 70-74 DOE Joint Genome Institute (JGI) 3300050015 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.047 659328059 996140 431 0 634 0 Restricted 16.93 Metagenome 3300015187 *Microbiome Permanent Draft Human fecal microbial communities from infant diaper, Dhaka, Bangladesh Human fecal microbial communities from infant diaper, Dhaka, Bangladesh - DMDT001T Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300015187 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes dhtaft@ucdavis.edu Diana Taft No Host-associated Mammals: Human Large intestine Digestive system Fecal Infant feces 23.8103 90.4125 67541724 92179 97 0 146 3 0.0 Metagenome 3300011780 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - seawater enrichment SCG45 University of British Columbia 3300011780 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 2560077 5099 1 0 8 0 SRX143154 0.0 Metagenome 3300042732 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - O_b19.1 Re-assembly Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042732 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1241 -89.1401 61838416 58680 4 2 7 6 SRX5234795 0.0 Metagenome 3300056395 *Microbiome Permanent Draft Freshwater microbial communities from high-altitude lakes in Yosemite National Park, California, USA Freshwater microbial communities from Lukens Lake, Yosemite National Park, California, USA - Y16_292_L2_t0 DOE Joint Genome Institute (JGI) 3300056395 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmbeman@gmail.com J Michael Beman No Environmental Aquatic Lake Freshwater Unclassified Freshwater 37.8598 -119.616 18052333 50850 40 5 49 6 Unrestricted 197.92 Metagenome 3300047551 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Alabama, United States - blackwarrior_2019_sw_WHONDRS-S19S_0021 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047551 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 32.541 -87.7982 568782107 924963 316 77 466 119 Unrestricted 0.0 Metagenome 3300045734 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - CSA4D DOE Joint Genome Institute (JGI) 3300045734 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 477567150 884713 311 43 610 57 Unrestricted 21.06 Metagenome 3300041896 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_60 MetaG AgResearch, New Zealand, Mosgeil 3300041896 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1282789450 2645986 282 20 926 33 0.0 Metagenome 3300014285 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_089 The George Washington University (GWU) 3300014285 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 15244428 32038 25 5 38 8 SRX655735 0.0 Metagenome 3300054092 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_8_100 re-annotation DOE Joint Genome Institute (JGI) 3300054092 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 297938891 511248 136 2 194 1 SRX3003281 0.0 Metagenome 3300029426 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 008_6_3_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029426 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 203314247 270187 216 0 285 0 0.0 Metagenome 3300032191 *Microbiome Permanent Draft Microbial communities from the deep biosphere Hydrothermal vent fluid microbial communities from Atlantic Lost City Hydrothermal Field, Atlantic Ocean - LC_3862_1325 re-assembly Marine Biological Laboratory 3300032191 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.12397 -42.120113 215561738 511632 176 15 339 18 0.0 Metagenome 3300043355 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 192-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043355 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.8567 -107.0971 489670920 1278750 444 18 802 24 Unrestricted 8.0 Metagenome 3300009430 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Groundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Big Spring DOE Joint Genome Institute (JGI) 3300009430 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes rstepanauskas@bigelow.org; duane.moser@dri.edu Ramunas Stepanauskas; Duane Moser No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 36.37 -116.27 588027414 1066526 732 48 1206 89 SRX2948571 Unrestricted 0.0 Metagenome 3300025629 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNTR3_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025629 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 34.65 135.05 440662511 734719 346 0 542 1 SRX2157911 Unrestricted 0.0 Metagenome 3300000682 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 59 DOE Joint Genome Institute (JGI) 3300000682 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 6023350 18636 25 0 53 0 SRX4341058 Unrestricted 0.0 Metagenome 3300027937 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B host_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027937 Metagenome Analysis spades v. 3.11.1 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.7219 -110.7021 73121122 116054 34 0 49 0 SRX2916801 Unrestricted 0.0 Metagenome 3300028209 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS374 with 3.0UM filter - spades JGI facility at Oak Ridge National Laboratory 3300028209 Metagenome Analysis Spades v. 3.11.1 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 11475040 20721 6 1 6 2 0.0 Metagenome 3300043569 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNPCB060 DOE Joint Genome Institute (JGI) 3300043569 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes viola.krukenberg@montana.edu Viola Krukenberg No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.5704 -110.8053 614610036 924773 456 4 655 1 Unrestricted 71.49 Metagenome 3300001767 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_CSW11AC DOE Joint Genome Institute (JGI) 3300001767 Metagenome Analysis Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 7694541 11152 8 0 10 0 SRX3321593 Unrestricted 0.0 Metagenome 3300005160 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Laval, Canada - mgLMB DOE Joint Genome Institute (JGI) 3300005160 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 45.54 -73.72 164139585 595395 274 16 619 27 SRX2521236 Unrestricted 0.0 Metagenome 3300012455 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100754 University of Pennsylvania 3300012455 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 12539874 24016 19 5 32 5 SRX756096 0.0 Metagenome 3300032069 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20 DOE Joint Genome Institute (JGI) 3300032069 Metagenome Analysis spades v. 3.12.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5099 -110.3581 1758081207 2927259 1095 4 1712 11 SRX6380908 Unrestricted 34.64 Metagenome 3300064800 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 595 in Falher, Alberta, Canada - S00JY_0669 Microbiome Insights 3300064800 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 55.45243753 -117.122471 12883714 19430 11 0 33 0 0.0 Metagenome 3300030415 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from Daisy Lake, Ontario, Canada Freshwater lake sediment microbial communities from Daisy Lake, Ontario, Canada - C18 University of Cambridge 3300030415 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 46.27199 -80.52479 1617542 5135 14 1 24 2 0.0 Metagenome 3300045410 *Microbiome Permanent Draft Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States Sediment microbial communities from uranium-contaminated floodplain near Riverton, Wyoming, United States - RVT2_Sep_46_v DOE Joint Genome Institute (JGI) 3300045410 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kboye@slac.stanford.edu Kristin Boye No Environmental Aquatic Sediment Floodplain Unclassified sediment 42.9886 -108.4 2524247970 4285260 954 15 1627 13 Unrestricted 0.0 Metagenome 3300027006 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S2_20_30 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027006 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228379 -119.2717467 91360758 236229 185 17 355 38 SRX2522451 Unrestricted 0.0 Metagenome 3300018007 *Microbiome Permanent Draft Coastal wetland sediment microbial communities from the Mid-Atlantic and Southeast Atlantic Coast of USA, responding to salinity intrusion. Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5 DOE Joint Genome Institute (JGI) 3300018007 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Freshwater sediment 35.9061 -76.1569 940031289 1975942 518 10 942 8 SRX4367127 Unrestricted 5.71 Metagenome 3300009714 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNTR3_MetaG DOE Joint Genome Institute (JGI) 3300009714 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 34.65 135.05 682311547 1296457 687 0 1100 5 SRX2157911 Unrestricted 0.0 Metagenome 3300057172 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2021-2004 DOE Joint Genome Institute (JGI) 3300057172 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.76265 -83.329 264568815 588770 178 38 265 52 Unrestricted 17.61 Metagenome 3300031702 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from Davis Island wharf, Antarctic Ocean - #37 DOE Joint Genome Institute (JGI) 3300031702 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5781 77.9617 598631669 1279186 284 26 600 40 SRX5650057 Unrestricted 24.98 Metagenome 3300001388 *Microbiome Permanent Draft Benzene-degrading bioreactor methanogenic microbial communities from Toronto, Canada Benzene-degrading bioreactor methanogenic microbial communities from Toronto, Canada - ORM2 bin 3300001388 Metagenome Analysis ABySS v. 1.3.2 released by JGI data releasing policy No Yes cheryl.washer@utoronto.ca; elizabeth.edwards@utoronto.ca Cheryl Washer; Elizabeth A. Edwards No Engineered Bioremediation Benzene Hydrocarbon Bioreactor Benzene-degrading bioreactor methanogenic 43.66266 -79.3917 3237207 3771 1 0 1 0 0.0 Metagenome 3300030468 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from healthy individual in Houston, USA - MG100155 University of Michigan 3300030468 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 29.76 -95.37 22549997 41728 48 0 66 0 0.0 Metagenome 3300035409 *Microbiome Permanent Draft Freshwater microbial communities from subterranean cave lakes in Wind Cave and Jewel Cave, South Dakota, USA Freshwater microbial community from subterranean cave lake in Wind Cave National Park, South Dakota, USA - LVC2018Full Massachusetts Institute of Technology 3300035409 Metagenome Analysis metaSPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes ose1@zips.uakron.edu Olivia Hershey No Environmental Aquatic Subterranean lake Freshwater Unclassified Subterranean freshwater lake 43.556984 -103.475742 96295088 159904 69 2 152 0 0.0 Metagenome 3300015091 *Microbiome Permanent Draft Danish lakes Microbial communities Depth profiles Lake Almind and Hund Freshwater microbial communities from Lake Almind, Silkeborg, Region Midtjylland, Denmark - ALS_03.08.12_19m metaSPAdes assemblies Odense University Hospital 3300015091 Metagenome Analysis metaSPAdes 3.7.1 released by JGI data releasing policy Yes Yes atreusch@biology.sdu.dk Alexander Treusch No Environmental Aquatic Lake Freshwater Unclassified Freshwater 56.148 9.546 6.9 92558732 313748 53 8 168 14 0.0 Metagenome 3300017474 *Microbiome Permanent Draft Bras del Port Noviembre 2014 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CCAB Nov 2014 University of Valencia 3300017474 Metagenome Analysis idba.1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Non-marine hypersaline water 38.1922 -0.5918 28070972 88635 4 0 1 0 0.0 Metagenome 3300026740 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A1w-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026740 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 20743468 68374 90 4 167 3 SRX1991160 Unrestricted 0.0 Metagenome 3300026362 *Microbiome Permanent Draft Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 C6 DOE Joint Genome Institute (JGI) 3300026362 Metagenome Analysis spades v. 3.11.1 Yes Yes ccraft@indiana.edu Chris Craft No Environmental Aquatic Wetlands Freshwater Sediment sediment 31.3377 -81.4644 51612554 165900 233 5 490 11 SRX4796408 Unrestricted 5.41 Metagenome 3300027843 *Microbiome Permanent Draft Wetland sediment microbial communities from St. Louis River estuary, Michigan under dissolved organic matter induced mercury methylation Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027843 Metagenome Analysis spades v. 3.11.1 Yes Yes diana.nemergut@duke.edu.deleted Diana Nemergut No Environmental Aquatic Wetlands Freshwater Sediment Wetland sediment 46.6972164 -92.3279105 1107176304 2448051 920 8 1671 10 SRX2775467 Unrestricted 0.0 Metagenome 3300035668 *Microbiome Permanent Draft Forest soil microbial communities from Eldorado National Forest, California, USA Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_2.1 DOE Joint Genome Institute (JGI) 3300035668 Metagenome Analysis metaspades v. 3.13.0 Yes Yes ndove7@gmail.com Nicholas Dove No Environmental Terrestrial Temperate forest Soil Bulk soil soil 38.7825 -120.2792 1709666770 4428151 1424 126 2587 210 SRX8239519 Unrestricted 9.43 Metagenome 3300004254 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 100_LOW12 DOE Joint Genome Institute (JGI) 3300004254 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 68713603 144076 38 0 88 0 SRX2721174 Unrestricted 0.0 Metagenome 3300032087 *Microbiome Finished The variation of viral communities during algal boom from the coastal of Qingdao, China Marine viral communities from the Yellow sea, Qingdao, China - XG0928 Beijing Novogene Bioinformatics Technology Co., Ltd 3300032087 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes foodyqw_12@163.com Yang Qingwei No Environmental Aquatic Coastal Marine Unclassified marine 36.0767 120.3087 342401267 596634 79 3 107 1 0.0 Metagenome 3300003493 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN DOE Joint Genome Institute (JGI) 3300003493 Metagenome Analysis Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 194179015 454090 259 53 476 94 Unrestricted 0.0 Metagenome 3300059717 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1561A-02 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059717 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2637 -123.4651 218386969 469833 165 24 282 25 SRX2753756 Unrestricted 0.0 Metagenome 3300038968 *Microbiome Permanent Draft Activated sludge microbial communities from lab-scale anammox bioreactor in University of Utah, Salt Lake City, Utah, USA Activated sludge microbial communities from lab-scale anammox bioreactor in University of Utah, Salt Lake City, Utah, USA - HiSeq_metaG University of Wisconsin 3300038968 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes supratimmukherjee@lbl.gov Supratim Mukherjee Yes 28561030 Engineered Bioreactor Unclassified Anaerobic Unclassified Activated sludge 40.7649 -111.8421 81009522 132414 52 0 105 0 0.0 Metagenome 3300003274 *Microbiome Permanent Draft Whitefly associated endosymbiont microbial communities from Neve Yaar, Israel Whitefly Bemisia tabaci associated secondary symbiont microbial communities from Neve Yaar, Israel - sample Cardinium_whitefly 3300003274 Metagenome Analysis released by JGI data releasing policy No Yes itaiopa6@gmail.com Itai Opatovsky No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Whitefly Bemisia tabaci associated 32.708101 35.179264 351658 337 1 0 1 0 0.0 Metagenome 3300049296 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA38 DOE Joint Genome Institute (JGI) 3300049296 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 369221446 921565 403 9 795 11 Unrestricted 7.57 Metagenome 3300024945 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 104_HOW12 (SPAdes) DOE Joint Genome Institute (JGI) 3300024945 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 70723197 108898 41 0 54 0 SRX2721181 Unrestricted 0.0 Metagenome 3300029250 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021232-90 Beijing Genomics Institute (BGI) 3300029250 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 202333706 282660 182 0 244 0 0.0 Metagenome 3300009292 *Microbiome Permanent Draft Estuarine microbial communities from Mobile Bay, Alabama Estuarine microbial communities from Mobile Bay, Alabama - Sample Wi re-assembly with CLC Auburn University 3300009292 Metagenome Analysis CLC 9 De novo released per JGI data release policy No Yes mariitarichard@gmail.com, rmm0025@auburn.edu; mariitarichard@gmail.com Richard Mariita, Richard M. Mariita; Richard Mariita No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 30.4464641 -87.9922684 287010 1192 4 0 9 0 0.0 Metagenome 3300000755 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 09SEP2008 hypolimnion DOE Joint Genome Institute (JGI) 3300000755 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300042705 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - A_a4.8 Re-assembly Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042705 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1237 -89.1404 62682868 60142 4 2 4 3 SRX5234797 0.0 Metagenome 3300001982 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - Control1 3300001982 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 7536621 43498 155 3 268 3 0.0 Metagenome 3300021215 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina ""control"", cg10ic 200bp-microeukaryotes" University of New South Wales 3300021215 Metagenome Analysis IDBA-UD released by JGI data releasing policy Yes Yes n.webster@aims.gov.au; e.botte@aims.gov.au Nicole Webster; Emmanuelle BOTTE No Host-associated Porifera Unclassified Unclassified Unclassified Cinachyra sp. (marine sponge) -9.828217 150.820517 473695 976 0 0 0 0 0.0 Metagenome 3300006151 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t30_683P_control - viral_metagenome University of Texas Southwestern Medical Center 3300006151 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.73 -96.97 94259727 197570 79 0 104 0 0.0 Metagenome 3300053746 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHL_01 DOE Joint Genome Institute (JGI) 3300053746 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.40849 -82.168434 958442370 1261869 30 49 59 37 Restricted 66.13 Metagenome 2209111009 *Microbiome Permanent Draft Saline water concentrator pond microbial communities from Bras del Port saltern, Santa Pola, Spain Saline water concentrator pond microbial communities from Bras del Port saltern, Spain - SS19 GATC-Biotech AG, Konstanz, Germany 2209111009 Metagenome Analysis released per JGI data release policy No Yes abf@us.es Ana Fernandez No Environmental Aquatic Oceanic Marine Unclassified Saline water concentrator pond 38.11 -0.36 378797312 1128674 1028 0 2237 0 0.0 Metagenome 3300013618 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01119 Weill Cornell Medical College 3300013618 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.88 8551993 12461 7 0 11 0 SRX823074 0.0 Metagenome 3300035582 *Microbiome Permanent Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - CA-2_at_3-4_cm Genome Quebec 3300035582 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89934 -73.72822 537942664 1412429 730 17 1566 42 0.0 Metagenome 3300013957 *Microbiome Permanent Draft Wastewater microbial communities from municipal sewage treatment plants in Nanjing, China Wastewater microbial communities from municipal sewage treatment plant in Nanjing, China - JXZ_EW_meta Nanjing University 3300013957 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 29003621 75239 36 14 78 16 SRX425448 0.0 Metagenome 3300048038 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - EG-07_D50 (version 2) DOE Joint Genome Institute (JGI) 3300048038 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3533 19.0466 326297080 601053 315 1 581 0 Restricted 0.0 Metagenome 3300013665 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01326 Weill Cornell Medical College 3300013665 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.82 -73.87 15606367 20395 6 2 11 2 SRX823266 0.0 Metagenome 3300029461 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001886-37 Beijing Genomics Institute (BGI) 3300029461 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 95479932 116571 60 0 104 0 0.0 Metagenome 3300025131 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025131 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 18.92 -104.89 477220877 1021642 11 0 6 0 SRX2557421 Unrestricted 0.0 Metagenome 3300070650 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Treehaven, Wisconsin, USA - TREE_002-M-20200706-COMP-DNA1 3300070650 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 128270515 299967 99 3 208 4 0.0 Metagenome 3300038740 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - RDC-2_at_0-1_cm Genome Quebec 3300038740 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.80159 -73.41443 472798250 1280584 751 29 1657 43 0.0 Metagenome 3300038362 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18B_2_11_6 mgh University of Alberta 3300038362 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 56.7292 -111.3885 60164791 77185 20 0 27 0 0.0 Metagenome 3300011716 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00409 Weill Cornell Medical College 3300011716 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.97 31617718 50629 16 0 31 0 SRX822379 0.0 Metagenome 3300028722 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368 DOE Joint Genome Institute (JGI) 3300028722 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040645 -106.94847615 708964089 1814153 409 6 702 18 SRX5355415 Unrestricted 12.25 Metagenome 3300051648 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TS43 (version 2) DOE Joint Genome Institute (JGI) 3300051648 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.4139 56272032 55704 75 0 75 0 SRX12729461, SRX12729460, SRX12729462 Restricted 0.0 Metagenome 3300026915 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN106 (SPAdes) DOE Joint Genome Institute (JGI) 3300026915 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 39.23550963 -121.2836963 10928158 37530 112 8 172 13 SRX2552116, SRX2552117 Unrestricted 0.0 Metagenome 3300026048 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026048 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.000706 -121.624306 68332032 187625 175 0 334 5 SRX7188819 Unrestricted 0.0 Metagenome 3300042939 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Aug2010-rd0387 DOE Joint Genome Institute (JGI) 3300042939 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1203472922 1717570 399 43 543 62 Unrestricted 19.83 Metagenome 3300071138 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_045-M-20190717-COMP-DNA1 3300071138 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 30217066 87130 74 7 152 10 0.0 Metagenome 3300026968 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and M1 (2) (SPAdes) DOE Joint Genome Institute (JGI) 3300026968 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 71935382 91472 45 0 58 0 SRX3311626 Unrestricted 0.0 Metagenome 3300040686 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Woodworth, Northern Plains, ND, USA - WOOD_001-M-20140507-COMP-DNA1 Argonne National Laboratory 3300040686 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12823 -99.24136 1098415 3632 17 2 32 5 ERX2134062 0.0 Metagenome 3300000515 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine sediment microbial community from Union City, CA, USA - Pond 1C Sediment 1 DOE Joint Genome Institute (JGI) 3300000515 Metagenome Analysis Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Intertidal zone Marine Salt pond sediment Enviromental 37.569083 -122.103267 39594039 99019 54 0 121 0 SRX3305178 Unrestricted 0.0 Metagenome 3300008307 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765074482 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008307 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 32508817 69535 22 0 53 0 0.0 Metagenome 3300050342 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-052-1 ( (v2) (version 2) DOE Joint Genome Institute (JGI) 3300050342 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.5705 -110.8052 182849422 211326 90 0 97 0 Unrestricted 0.0 Metagenome 3300029868 *Microbiome Permanent Draft North Pond 2012 Aquifer microbial communities from Mid-Atlantic Ridge, Atlantic Ocean - 1383C Shallow Re-assembly of 2012 Metagenome The Marine Biological Laboratory 3300029868 Metagenome Analysis IDBA-UD v. 1.1.2 released by JGI data releasing policy No Yes tully.bj@gmail.com; lmseyler@gmail.com Benjamin Tully; Lauren Seyler Yes 26935537 Environmental Aquatic Aquifer Marine Formation fluid marine subseafloor aquifer 22.8 -46.05 38380620 49379 42 5 53 8 0.0 Metagenome 3300031229 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38 (version 2) DOE Joint Genome Institute (JGI) 3300031229 Metagenome Analysis spades v. 3.12.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9888 -108.3994 3929561530 8744606 1732 36 2834 63 SRX5783415, SRX5783416 Unrestricted 0.0 Metagenome 3300041910 *Microbiome Finished Marine bacterial communities from Black Sea, Georgia Marine microbial communities from Black Sea, Poti, Georgia ? P31 NCDC Lugar Center, Georgia 3300041910 Metagenome Analysis Denovo v. 3.2 released by JGI data releasing policy No Yes iakusradze@pha.ge Ia Kusradze No Environmental Aquatic Unclassified Marine Unclassified Marine 42.1583 41.5711 7278008 10297 3 10 7 5 0.0 Metagenome 3300014856 *Microbiome Permanent Draft Danish lakes Microbial communities Depth profiles Lake Almind and Hund Sediment microbial communities from Lake Hund, Silkeborg, Region Midtjylland, Denmark - HUS_14.08.12_sediment_0-5cm re-submission with coverage Odense University Hospital 3300014856 Metagenome Analysis MEGAHIT v1.1.1 released by JGI data releasing policy Yes Yes atreusch@biology.sdu.dk Alexander Treusch No Environmental Aquatic Lake Freshwater Sediment Sediment 56.04 9.54 2337951 5943 9 0 18 0 0.0 Metagenome 3300049667 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_B_2_control DOE Joint Genome Institute (JGI) 3300049667 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 223234114 450844 316 25 597 28 Unrestricted 10.14 Metagenome 3300033119 *Microbiome Finished Seoul Wastewater Treatment Plant Virome, South Korea Activated sludge viral community from Seonam wastewater treatment plant, Seoul, South Korea - SWWTP-sludge2 v2 Macrogen 3300033119 Metagenome Analysis SPAdes v. 3.10.1 released by JGI data releasing policy No Yes chojc@inha.ac.kr Jang-Cheon Cho No Engineered Wastewater Unclassified Activated Sludge Unclassified Activated sludge 37.577125 126.82583 54500993 78145 0 0 0 0 0.0 Metagenome 3300025963 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleA_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025963 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.107521 -121.649681 78848786 187767 162 3 328 5 SRX7144826 Unrestricted 0.0 Metagenome 3300005391 *Microbiome Permanent Draft Olavius algarvensis microbial communities from Capo di Sant'Andrea bay, Elba, Italy Olavius algarvensis microbial communities from Capo di Sant'Andrea bay, Elba, Italy - Gamma3 DOE Joint Genome Institute (JGI), Max Planck Institute 3300005391 Metagenome Analysis Jazz No Yes ndubilie@mpi-bremen.de Nicole Dubilier Yes 16980956 Host-associated Annelida Unclassified Integument Unclassified Olavius algarvensis 42.807222 10.141111 4647793 4444 1 0 1 0 0.0 Metagenome 3300001892 *Microbiome Permanent Draft Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils (2) Desert soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils - Control dataset for oil perturbed soil, Sample 3 3300001892 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Terrestrial Unclassified Soil Desert Grassland soil 23.850674 69.734802 0 0 0 0 0 0 0.0 Metagenome 7000000306 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 550534656 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000306 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 59857482 113862 0 0 0 0 0.0 Metagenome 3300031909 *Microbiome Permanent Draft Rock endolithic microbial communities from Victoria Land, Antarctica Rock endolithic microbial communities from Victoria Land, Antarctica - Buttleship Promontory sud DOE Joint Genome Institute (JGI) 3300031909 Metagenome Analysis spades v. 3.12.0 Yes Yes selbmann@unitus.it Laura Selbmann Yes 32139564 Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock -76.9 160.9 349617378 544634 30 18 56 21 SRX5225093 Unrestricted 87.53 Metagenome 3300027114 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Fresh water mixed with fracking chemicals microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027114 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Engineered Industrial production Input fracking water Chemical products Unclassified Fresh water mixed with fracking chemicals 40.178 -81.073 180445344 378650 140 17 237 26 SRX2925625 Unrestricted 0.0 Metagenome 3300046699 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-C1 10-14 DOE Joint Genome Institute (JGI) 3300046699 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0435 114392056 194749 111 14 196 26 Restricted 14.0 Metagenome 3300006076 *Microbiome Permanent Draft Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea - fluid A Max Planck Institute for Plant Breeding Research 3300006076 Metagenome Analysis idba_ud v 1.1.1 released per JGI data release policy Yes Yes dmeier@mpi-bremen.de, dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Hydrothermal vents Marine Diffuse flow diffuse hydrothermal fluids -3.7999163 152.1008595 448592571 663533 364 22 503 24 0.0 Metagenome 3300025043 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - LP-52 (SPAdes) DOE Joint Genome Institute (JGI) 3300025043 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 50.0003 -144.9996 73615077 149346 59 0 73 0 Unrestricted 0.0 Metagenome 3300043100 *Microbiome Permanent Draft Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA - SWaN 13 years plot 12 DOE Joint Genome Institute (JGI) 3300043100 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes luizdomeignoz@gmail.com Luiz Domeignoz Horta No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 42.303 -72.1228 1314574934 2157853 270 37 465 58 SRX15792989 Unrestricted 13.26 Metagenome 3300002736 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE17-D DOE Joint Genome Institute (JGI) 3300002736 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.42 -89.32 214341 699 15 0 23 1 SRX1991452 Unrestricted 0.0 Metagenome 3300000568 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Tailings pond microbial communities from Northern Alberta -Short chain hydrocarbon degrading methanogenic enrichment culture SCADC: McGill University 3300000568 Metagenome Analysis released per user request No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Built environment Petrochemical Tailings pond Wastewater Hydrocarbon resource environments 39.0042816 -77.1012173 7.26 646672477 1513645 690 6 1166 16 0.0 Metagenome 3300024434 *Microbiome Permanent Draft Vaginal microbial communities from lab mice Vaginal microbial communities from healthy lab mice, Madrid, Spain - G2-S16 treatment B2, day 1 Polytechnic University of Valencia 3300024434 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Vagina Reproductive system Unclassified mice vagina 40.4191094 -3.6725753 570965 927 0 0 0 0 0.0 Metagenome 3300028663 *Microbiome Permanent Draft Antarctic Nanohaloarchaea Enriched hypersaline water microbial communities from Club Lake, Antarctica - Round 1 Nha-Ce Garvan Institute of Medical Research 3300028663 Metagenome Analysis MiniASM v. 0.2-r168-dirty, MiniMAP v. 2.9, Racon v. 1.2.0 Released by Simon per user request. Yes Yes m.allen@unsw.edu.au; r.cavicchioli@unsw.edu.au Michelle Allen; Rick Cavicchioli Yes 31253704 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline water -68.5417 78.2467 60296874 93151 31 0 35 0 0.0 Metagenome 3300013876 *Microbiome Permanent Draft Microbial communities from methanogenic microcosms from oil petroleum samples laboratory microbial enrichments from Reconcavo Basin petroleum reservoir, Newcastle Upon Tyne, UK - 15 gl 50C L3 15gl 50C L3 UNIVERSIDADE DE SAO PAULO 3300013876 Metagenome Analysis METASPADES k=79 No Yes inatalia.sierra@gmail.com Isabel Natalia Sierra Garcia No Engineered Lab enrichment Anaerobic media Defined media Unclassified Laboratory microcosms 54.97825278 -1.61778056 19744048 35578 25 0 42 0 0.0 Metagenome 3300005509 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV51 DOE Joint Genome Institute (JGI) 3300005509 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 738936857 1771480 851 15 1344 19 SRX2781641 Unrestricted 0.0 Metagenome 3300032360 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915 DOE Joint Genome Institute (JGI) 3300032360 Metagenome Analysis spades v. 3.13.0 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.7468 -122.0193 3567636841 8415575 1779 469 3063 756 SRX6423994 Unrestricted 18.89 Metagenome 3300029815 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P010V6 Beijing Genomics Institute (BGI) 3300029815 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 280970817 353292 200 0 282 0 0.0 Metagenome 3300011556 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00287 Weill Cornell Medical College 3300011556 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.71 -74.0 20674230 35005 17 0 28 0 SRX822260 0.0 Metagenome 3300009057 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1553A-3 DOE Joint Genome Institute (JGI) 3300009057 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.1867 -123.8835 172328964 341606 308 78 505 174 SRX2753730 Unrestricted 5.44 Metagenome 3300036929 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 E3 20-24 DOE Joint Genome Institute (JGI) 3300036929 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0468 358387765 721823 241 3 471 3 SRX8142652 Unrestricted 8.03 Metagenome 3300027241 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1553A-02 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027241 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.1867 -123.8835 158452257 321070 131 11 231 20 SRX2753729 Unrestricted 19.66 Metagenome 3300045486 *Microbiome Permanent Draft Florida Reef Tract Coral Disease Outbreak Coral surface microbial communities from Montastraea cavernosa, offshore reef, Ft. Lauderdale, FL, USA - McD4 -2 University of Florida 3300045486 Metagenome Analysis MEGAHIT v. 1.1.4 released per PI No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified coral surface 26.16 -80.1 162503266 251261 3 4 3 12 0.0 Metagenome 3300009645 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_6_40 DOE Joint Genome Institute (JGI) 3300009645 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 447809257 814508 209 7 361 8 SRX3002038 Unrestricted 0.0 Metagenome 3300043084 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - Beaver3Cecum1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043084 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.18 -122.54 245554546 455627 452 4 661 6 SRX8345852 Unrestricted 24.02 Metagenome 3300049689 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A15_A_4_drought DOE Joint Genome Institute (JGI) 3300049689 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 94970072 227058 261 13 539 30 Unrestricted 10.46 Metagenome 3300070954 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The Jones Center At Ichauway, Georgia, USA - JERC_048-M-20160727-COMP-DNA1 3300070954 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 949407 3192 14 3 28 5 0.0 Metagenome 3300025806 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025806 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 330644154 707870 102 8 156 11 SRX2751900, SRX6754010 Unrestricted 0.0 Metagenome 3300036973 *Microbiome Permanent Draft Outdoor air microbial communities from various locations in the west coast of the United States Outdoor air microbial communities from Colorado State University Foothills Campus, Fort Collins, CO, USA - KA3 DOE Joint Genome Institute (JGI) 3300036973 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes paul.demott@colostate.edu Paul DeMott No Environmental Air Unclassified Outdoor Air Unclassified terrestrial aerosol 40.5885 -105.1479 803174978 1959507 1049 226 1855 391 SRX10084612 Unrestricted 9.87 Metagenome 3300022934 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (version 2) DOE Joint Genome Institute (JGI) 3300022934 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 935577504 1802991 462 52 641 75 SRX4071964 Unrestricted 25.45 Metagenome 3300021546 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge Cinachyra sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - cg24is 200bp no Eukaryotes last University of New South Wales 3300021546 Metagenome Analysis IDBA-UD released by Emmanuelle BOTTE Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Cinachyra sp. (marine sponge) -9.8241 150.825833 72821257 135770 60 1 76 4 0.0 Metagenome 3300025932 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025932 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Corn rhizosphere 42.3948 -85.3738 3361885780 8022570 1352 106 2616 193 SRX2740085 Unrestricted 0.0 Metagenome 3300001181 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M2 DOE Joint Genome Institute (JGI) 3300001181 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 49.08 -89.38 25144067 70937 127 19 189 26 SRX3312089 Unrestricted 0.0 Metagenome 3300003451 *Microbiome Permanent Draft Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S6-DC05C 3300003451 Metagenome Analysis released per JGI data releasing policy No Yes julie.champagne@cnrc-nrc.gc.ca Julie Champagne No Environmental Aquatic Neritic zone/Coastal water Marine Sediment Marine sediment 53.6667 -129.1333 39393659 148012 47 0 105 3 0.0 Metagenome 3300013269 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100676 University of Pennsylvania 3300013269 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 20001351 55786 25 0 38 0 SRX756418 0.0 Metagenome 3300017460 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS378 with 3.0UM filter JGI facility at Oak Ridge National Laboratory 3300017460 Metagenome Analysis Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 14460633 32579 26 2 26 3 0.0 Metagenome 3300026990 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 73 (SPAdes) DOE Joint Genome Institute (JGI) 3300026990 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 96680452 244456 116 0 236 3 SRX4341347 Unrestricted 0.0 Metagenome 3300014540 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS44_6 University of Hohenheim 3300014540 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 90148349 137757 53 0 91 0 0.0 Metagenome 3300021405 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O DOE Joint Genome Institute (JGI) 3300021405 Metagenome Analysis spades v. 3.11.1-check Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 3315596002 7233509 872 144 1569 219 SRX4022442 Unrestricted 9.02 Metagenome 3300001849 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM26, ROCA_DNA190_2.0um_MCP-N_C_2b 3300001849 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Lotic Freshwater Unclassified Marine plankton -0.083883 -51.051417 217872857 511768 31 6 150 11 0.0 Metagenome 3300013287 *Microbiome Permanent Draft Activated sludge bacterial and viral communities from EBPR bioreactors in Australia Activated sludge bacterial and viral communities from EBPR bioreactors in Queensland, Australia - SBR4-V92007 California Institute of Technology 3300013287 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Activated sludge -27.49999 153.01209 12595201 32716 14 4 19 4 SRX1100507 0.0 Metagenome 3300046642 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere DOE Joint Genome Institute (JGI) 3300046642 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1212 -123.2698 1086206175 1745496 345 106 544 127 Unrestricted 14.19 Metagenome 3300014296 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D1 DOE Joint Genome Institute (JGI) 3300014296 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.198971 -122.026955 255973839 635436 321 3 643 5 SRX7187018 Unrestricted 0.0 Metagenome 3300031273 *Microbiome Permanent Draft Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-19 metaG DOE Joint Genome Institute (JGI) 3300031273 Metagenome Analysis spades v. 3.12.0 Yes Yes rbneum@uw.edu Rebecca Neumann No Host-associated Plants Rhizosphere Roots Soil rhizosphere 47.6516 -122.3045 10068199 33709 14 0 33 1 SRX5346173 Unrestricted 401.19 Metagenome 3300043377 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 152-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043377 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9865 -107.0041 802255043 1994625 489 34 910 54 Unrestricted 6.92 Metagenome 3300032799 *Microbiome Permanent Draft Lake microbial communities from Canada Sediment microbial communities from the Atlantic Highlands Ecozone, Canada - bottom sediment 17-067 Genome Quebec 3300032799 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Sediment 48.131057 -68.666779 681879765 1569007 475 2 942 9 0.0 Metagenome 3300020278 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000674 (ERX556076-ERR599151) CEA Genoscope 3300020278 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -9.1552 -140.5284 290358389 727339 342 15 547 40 0.0 Metagenome 3300038816 *Microbiome Permanent Draft Activated sludge bacterial and viral communities from EBPR bioreactors in Australia Activated sludge bacterial and viral communities from EBPR bioreactors in Queensland, Australia - SBR4-V93108 California Institute of Technology 3300038816 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Activated sludge -27.49999 153.01209 14654164 27086 7 0 14 0 SRX1113225 0.0 Metagenome 3300011840 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00995 Weill Cornell Medical College 3300011840 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.59 -73.77 41131089 65314 32 2 50 3 SRX822957 0.0 Metagenome 3300001252 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 8OCT2008 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300001252 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 1717017 4723 19 3 30 7 SRX3308510 Unrestricted 0.0 Metagenome 3300021290 *Microbiome Permanent Draft Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States - Hobet_Cave_2 DOE Joint Genome Institute (JGI) 3300021290 Metagenome Analysis spades v. 3.11.1-check Yes Yes zachary.freedman@mail.wvu.edu Zachary Freedman No Environmental Terrestrial Surface mine Soil Reclaimed soil 38.083 -81.98 17071799 47638 54 7 89 17 SRX4031145 Unrestricted 5.64 Metagenome 3300029980 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N3_3 DOE Joint Genome Institute (JGI) 3300029980 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 68.3532 19.0469 682707108 1729638 451 11 756 17 SRX5357458 Unrestricted 8.41 Metagenome 3300069622 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_006-M-20160719-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069622 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 12572630 39147 41 1 70 3 0.0 Metagenome 3300015053 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction) DOE Joint Genome Institute (JGI) 3300015053 Metagenome Analysis metalrec/blasr v. metalrec version 1.0.2/blasr 1.3.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 766293004 1265565 364 40 570 40 SRX3049000, SRX3048992, SRX3048993, SRX3048994, SRX3048995, SRX3048996, SRX3048997, SRX3048998, SRX3048999 Unrestricted 0.0 Metagenome 3300050501 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Bulk soil microbial communities from a Populus tree surrounding site in Tennessee, USA - Soil MetaG P. deltoides SBSDD5 re-annotation DOE Joint Genome Institute (JGI) 3300050501 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Environmental Terrestrial Tree plantation Soil Unclassified Bulk soil 35.8443 -83.9607 4465016540 8940858 1570 45 2801 71 SRX2840906 0.0 Metagenome 3300020712 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 03AUG2009 hypolimnion DOE Joint Genome Institute (JGI) 3300020712 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu; rrmalmstrom@lbl.gov Katherine McMahon; Rex Malmstrom Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 95972496 205783 99 17 160 30 Unrestricted 0.0 Metagenome 3300046400 *Microbiome Permanent Draft Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA Soil microbial communities from the Great Smoky Mountains National Park, Tennessee, USA - DNA084b-TCB DOE Joint Genome Institute (JGI) 3300046400 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes khughes@utk.edu Karen Hughes No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 35.6875 -83.5012 348157502 939562 331 47 697 70 Unrestricted 7.79 Metagenome 3300070819 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Arizona, USA - SRER_047-M-20180801-COMP-DNA1 3300070819 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 25486630 77719 118 5 249 10 0.0 Metagenome 3300003858 *Microbiome Permanent Draft Freshwater lake sediment microbial communities from the University of Notre Dame, USA, of lakes that contribute to methane emissions Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI DOE Joint Genome Institute (JGI) 3300003858 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes sjones20@nd.edu Stuart Jones No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 41.7 -86.23 730305691 1692753 892 34 1429 57 SRX2576532 Unrestricted 0.0 Metagenome 3300027783 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027783 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 51.62 -128.09 724571151 1822815 506 86 865 154 SRX2575217 Unrestricted 0.0 Metagenome 3300005174 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0927_12_40cm DOE Joint Genome Institute (JGI) 3300005174 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2193436015 5878745 2000 31 3400 70 SRX2521035 Unrestricted 0.0 Metagenome 3300031625 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Marine microbial communities from Western Arctic Ocean, Canada - CBN3_32.1 DOE Joint Genome Institute (JGI) 3300031625 Metagenome Analysis spades v. 3.12.0 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified Marine 80.9595 -132.1842 821857489 1620899 690 104 1047 185 SRX5797858 Unrestricted 15.0 Metagenome 3300037084 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-X2 DOE Joint Genome Institute (JGI) 3300037084 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0475 468051584 769173 149 4 227 7 SRX8137571 Unrestricted 18.34 Metagenome 3300000246 *Microbiome Permanent Draft Hypersaline viral and bacterial communities from Bras del Port, Santa Pola, Spain Hypersaline viral and bacterial communities from Bras del Port, Santa Pola, Spain - CR30_Large_Contigs Lifesequencing S.L. 3300000246 Metagenome Analysis released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Unclassified Hypersaline samples 38.190704 -0.57 7678523 16503 0 0 0 0 0.0 Metagenome 3300070284 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dead Lake, Alabama, USA - DELA_004-M-20190624-COMP-DNA1 3300070284 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 15236764 48175 107 6 167 9 0.0 Metagenome 3300002172 *Microbiome Permanent Draft Bioremediated contaminated groundwater microbial communities from North Railroad Avenue plume (NRAP), New Mexico Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-47 DOE Joint Genome Institute (JGI) 3300002172 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes reiss@nmt.edu, NNIvanova@lbl.gov; rebecca.reiss@nmt.edu Rebecca Reiss, Natalia Ivanova; Rebecca Reiss Yes 27980706 Environmental Aquatic Groundwater Deep subsurface Contaminated Bioremediated contaminated groundwater 35.992 -106.0797 244212906 505295 390 0 693 2 SRX2554387 Unrestricted 0.0 Metagenome 3300026880 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026880 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 52674194 155500 102 23 179 37 SRX3312004 Unrestricted 0.0 Metagenome 3300029684 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37269 Beijing Genomics Institute (BGI) 3300029684 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 182780516 209767 132 0 192 0 0.0 Metagenome 3300023089 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_11_MG DOE Joint Genome Institute (JGI) 3300023089 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Inlet Marine Unclassified seawater 48.64 -123.5 648839788 1956380 702 53 1252 99 SRX4480175 Unrestricted 8.43 Metagenome 3300004878 *Microbiome Permanent Draft Ecklonia radiata associated microbial communities from Long Bay, Malabar Australia Ecklonia radiata associated microbial communities from Long Bay, Malabar Australia Y3 University of New South Wales 3300004878 Metagenome Analysis idba-ud released per JGI data release policy Yes Yes z.qiu@student.unsw.edu.au Zhiguang Qiu No Host-associated Algae Unclassified Unclassified Unclassified Ecklonia radiata associated 19694241 32601 13 1 15 2 0.0 Metagenome 3300036419 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T25 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036419 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 94663800 138454 59 2 84 2 SRX4415312, SRX7705692 Unrestricted 0.0 Metagenome 3300012477 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.3.yng.040610 DOE Joint Genome Institute (JGI) 3300012477 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9076 -79.0506 77961480 205906 181 32 416 49 SRX3527432 Unrestricted 0.0 Metagenome 2084038014 *Microbiome Permanent Draft Soil microbial community from Hopland, California, USA, that is PCE polluted Soil microbial community from Hopland, California, USA, that is PCE polluted - No amended GATC-Biotech AG, Konstanz, Germany 2084038014 Metagenome Analysis released per JGI data release policy No Yes timothy.vogel@ec-lyon.fr Timothy M. Vogel, Timothy Vogel No Environmental Terrestrial Unclassified Soil Contaminated Soil 38.9727 -123.1145 3430175 9676 4 0 9 0 0.0 Metagenome 3300002626 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A4a-11 DOE Joint Genome Institute (JGI) 3300002626 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 246106 818 35 1 51 3 SRX1991134 Unrestricted 0.0 Metagenome 3300029890 *Microbiome Permanent Draft Groundwater microbial communities from Horonobe Underground Research Laboratory (URL), Japan Groundwater microbial communities from Horonobe Underground Research Laboratory (URL), Japan - horonobe_ig2157 University of California, Berkeley 3300029890 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Released because its Published Yes Yes Yes 28350393 Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 45.045278 141.859444 123290341 172535 83 1 103 4 0.0 Metagenome 3300038333 *Microbiome Permanent Draft Cow gut associated microbial communities from Edmonton, Canada Cow rumen associated microbial communities from Edmonton, Canada - 17U University of Alberta 3300038333 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Host-associated Mammals Stomach Digestive system Rumen Cow rumen associated 53.54 -113.49 11950681 20837 20 0 33 0 SRX2506091 0.0 Metagenome 3300023067 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S221-509R-5 DOE Joint Genome Institute (JGI) 3300023067 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 191690020 525934 485 24 861 41 SRX4799020 Unrestricted 8.0 Metagenome 3300010301 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015 DOE Joint Genome Institute (JGI) 3300010301 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 731348176 1660244 532 30 1025 57 SRX2524979 Unrestricted 0.0 Metagenome 3300038678 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Sediment microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR13_sedM8 DOE Joint Genome Institute (JGI) 3300038678 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Sediment sediment 47.7538 -127.7637 1264206328 3551923 1410 6 2694 7 SRX9096830 Unrestricted 14.55 Metagenome 3300009852 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 99 mira Center for Advanced Technologies in Genomics, Sao Paulo University 3300009852 Metagenome Analysis mira released per JGI data release policy No Yes joao.c.setubal@gmail.com Joao Setubal No Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 120283065 202904 258 6 358 16 0.0 Metagenome 3300037100 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 S-1-S DOE Joint Genome Institute (JGI) 3300037100 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 739671897 1584466 400 76 728 119 SRX8149427 Unrestricted 6.71 Metagenome 3300019375 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Alfalfa, Gen0, Rep 1, Penicillin and Streptomycin DOE Joint Genome Institute (JGI) 3300019375 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4148 -119.8405 523140507 858770 753 1372 1460 2596 SRX3963070 Unrestricted 51.41 Metagenome 3300051094 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Soil microbial communities from peatland in Alberta, Canada - SB-U-BARE 70-80 cm DOE Joint Genome Institute (JGI) 3300051094 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4621 -114.8803 1161670481 1625445 336 3 448 7 Restricted 45.3 Metagenome 3300049285 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MB8 DOE Joint Genome Institute (JGI) 3300049285 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 146391614 372174 320 4 690 13 Unrestricted 24.98 Metagenome 3300020552 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 06JUL2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020552 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 136235097 279738 148 42 244 65 SRX1989774 Unrestricted 0.0 Metagenome 3300041420 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass leaf microbial community from Lincoln, Canterbury, New Zealand - RGL17_1 MetaG AgResearch, New Zealand, Mosgeil 3300041420 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Perennial ryegrass leaf -43.648506 172.343549 476948308 718366 35 158 75 141 0.0 Metagenome 3300001578 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0626 DOE Joint Genome Institute (JGI) 3300001578 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -28.62 -11.8 12496182 29940 39 22 63 28 SRX1982981 Unrestricted 0.0 Metagenome 3300039873 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 084B_R1 University of Maryland 3300039873 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.63730556 27.19722222 22526563 39547 48 0 66 0 0.0 Metagenome 3300026694 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN611 (SPAdes) DOE Joint Genome Institute (JGI) 3300026694 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 11306153 37338 72 3 111 3 SRX1986991 Unrestricted 0.0 Metagenome 3300000590 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 22MAY2008 epilimnion DOE Joint Genome Institute (JGI) 3300000590 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300025739 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-312 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025739 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.290565 -156.788622 534885976 1119791 310 0 503 1 SRX1990906 Unrestricted 0.0 Metagenome 3300037355 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 712 E-2-M DOE Joint Genome Institute (JGI) 3300037355 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 361628911 935967 458 9 787 16 SRX9097215 Unrestricted 6.3 Metagenome 3300021432 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M DOE Joint Genome Institute (JGI) 3300021432 Metagenome Analysis spades v. 3.11.1-check Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 3445496851 7266231 1115 53 1899 83 SRX4022439 Unrestricted 9.15 Metagenome 3300048924 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 DOE Joint Genome Institute (JGI) 3300048924 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Unclassified Roots Unclassified Root 42.40581 -85.40228 1395826605 2030482 427 83 587 110 Unrestricted 28.93 Metagenome 3300037569 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C4-7A DOE Joint Genome Institute (JGI) 3300037569 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 112170985 353458 243 4 410 8 SRX9166331, SRX9166330 Unrestricted 0.0 Metagenome 3300029347 *Microbiome Permanent Draft Streptococcus thermophilus viral communities from infected culture grown on milk medium, Madison, Wisconsin, USA Streptococcus thermophilus viral communities from infected culture grown on milk medium, Madison, Wisconsin, USA - MOI-0_1 Banfield Lab, University of California, Berkeley 3300029347 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Microbial Unclassified Bacteria Unclassified Streptococcus thermophilus 43.05 -89.3 1855821 2193 1 0 1 0 0.0 Metagenome 3300029916 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_1 DOE Joint Genome Institute (JGI) 3300029916 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 485390679 1106828 400 126 605 173 SRX5355606 Unrestricted 8.28 Metagenome 3300028419 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 30D DOE Joint Genome Institute (JGI) 3300028419 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 238588606 473039 171 54 269 96 SRX5171611 Unrestricted 16.9 Metagenome 3300033551 *Microbiome Permanent Draft Soil microbial communities from agricultural site in Penn Yan, New York, United States Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5 DOE Joint Genome Institute (JGI) 3300033551 Metagenome Analysis spades v. 3.12.0 Yes Yes dbuckley@cornell.edu Dan Buckley No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.673 -77.032 3553774473 9085942 3344 137 6131 250 SRX7089384 Unrestricted 30.42 Metagenome 3300005198 *Microbiome Permanent Draft Mallorca 2014 E2 E2 T9 University of Alicante 3300005198 Metagenome Analysis IDBA 1.1.1 PRE correction released per JGI data release policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline 39.338015 3.051796 106017632 312475 130 0 25 0 0.0 Metagenome 3300014955 *Microbiome Permanent Draft Human fecal microbial community of Hadza hunter-gatherer and regular subjects from Tanzania and Italy Human fecal microbial community of Hadza hunter-gatherer populations from Tanzania - 10025 University of Bologna 3300014955 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal -3.6347588 35.0828588 100540386 187073 105 2 148 1 0.0 Metagenome 3300042622 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Spinitermes trispinosus from Petit Saut, French Guiana, France - Spi319 Eurofins MWG Operon 3300042622 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 5.071383 -53.039049 775963832 798546 130 13 197 16 0.0 Metagenome 3300000777 *Microbiome Permanent Draft Human gut microbial communities from Waterloo, Canada Human gut microbiome from Waterloo, Canada, sample Crude Extract University of Waterloo 3300000777 Metagenome Analysis released per JGI data release policy No Yes itskathylam@gmail.com Kathy Lam No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 43.4706 -80.5361 0 0 0 0 0 0 0.0 Metagenome 3300049856 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Washington, USA - marthacreek_2019_sed_WHONDRS-S19S_0030 DOE Joint Genome Institute (JGI) 3300049856 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 45.792348 -121.929131 263641962 624819 370 18 759 35 Restricted 0.0 Metagenome 3300014667 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01233 Weill Cornell Medical College 3300014667 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.97 42748782 49139 14 0 29 0 SRX823188 0.0 Metagenome 3300040424 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_003-M-20140325-COMP-DNA1 Argonne National Laboratory 3300040424 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 4599310 14692 40 3 69 8 ERX2134028 0.0 Metagenome 3300026678 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized -NN620 (SPAdes) DOE Joint Genome Institute (JGI) 3300026678 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 3605433 11476 31 3 70 8 SRX1986999 Unrestricted 0.0 Metagenome 3300001594 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes in water sample from Medicine Hat oil field -PW_MHGC_2012April2: McGill University 3300001594 Metagenome Analysis released per user request No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 50.033333 -110.666667 7.2 1085936204 2443758 1095 5 1969 8 0.0 Metagenome 3300032374 *Microbiome Permanent Draft Understanding the reciprocal impacts of modified plant cell wall and associated microbiome Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R1 DOE Joint Genome Institute (JGI) 3300032374 Metagenome Analysis spades v. 3.13.0 Yes Yes kalluriudayc@ornl.gov Udaya C. Kalluri No Host-associated Plants Stem Phyllosphere Wood/Secondary xylem xylem 32.1348 -81.9657 839317284 1149329 273 90 380 114 SRX6871099 Unrestricted 63.77 Metagenome 3300002809 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A3-10 DOE Joint Genome Institute (JGI) 3300002809 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 400376 1352 38 0 61 1 SRX1991108 Unrestricted 0.0 Metagenome 3300026333 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_12_30cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026333 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 611126477 1122778 375 9 568 17 SRX2727816 Unrestricted 0.0 Metagenome 3300022445 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL3WBGP1 JM82 AGRF 3300022445 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996531 115.533257 45066506 80363 36 1 54 2 0.0 Metagenome 3300023231 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #1231 DOE Joint Genome Institute (JGI) 3300023231 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 116441688 242054 95 13 149 19 SRX4397412 Unrestricted 19.69 Metagenome 7000000431 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159369152 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000431 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 60990505 80659 0 0 0 0 0.0 Metagenome 3300014689 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00326 Weill Cornell Medical College 3300014689 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.78 -73.97 43096992 67919 27 0 43 0 SRX822299 0.0 Metagenome 3300035372 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_2a_23_7 mgh University of Alberta 3300035372 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified wastewater 56.7292 -111.3885 11745460 16042 7 0 11 0 0.0 Metagenome 3300025905 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025905 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.4774 -85.451 1639772412 4222233 912 78 1830 118 SRX2745057 Unrestricted 0.0 Metagenome 3300005353 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG DOE Joint Genome Institute (JGI) 3300005353 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 4546895419 12130160 3134 173 5232 294 SRX2740295 Unrestricted 0.0 Metagenome 3300012800 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched chicken feces microbial communities from UW Madison campus, WI, USA - DID2882_E24_Lignin MG DOE Joint Genome Institute (JGI) 3300012800 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie Yes 29545786 Host-associated Birds Large intestine Digestive system Fecal feces 43.073 -89.4011 61021420 80653 55 0 84 0 SRX3566178 Unrestricted 0.0 Metagenome 3300040242 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 098_R1_022417 University of Maryland 3300040242 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.70147222 27.08997222 7224607 11245 19 2 28 1 0.0 Metagenome 3300042176 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Eunicella gazella from Algarve, Portugal - EG18H v2 Molecular Research LP (MR DNA) 3300042176 Metagenome Analysis Metawrap workflow v. 1.0.8 released by JGI data releasing policy Yes Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 6248284 5693 2 5 2 3 0.0 Metagenome 3300025225 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025225 Metagenome Analysis spades v. 3.11.1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 102610665 127313 72 1 87 2 SRX2770684 Unrestricted 0.0 Metagenome 3300028605 *Microbiome Permanent Draft Microbial communities from Yellowstone National Park hot springs 2017 Hot spring sediment microbial communities from Flat Cone (chemo OnOff), Yellowstone National Park, USA - 170627D University of Minnesota 3300028605 Metagenome Analysis SPAdes v. 3.11.0 released by JGI data releasing policy Yes Yes trinityh@umn.edu Trinity Hamilton No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 44.5685 -110.8636 9.049 66434634 158213 35 3 62 1 0.0 Metagenome 3300038694 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Natural salt marsh sediment microbial communities from Mersea Island, United Kingdom - W MINM 1A University of York 3300038694 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Natural salt marsh sediment 51.797167 0.920967 35459696 97970 67 1 120 5 0.0 Metagenome 3300037587 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Sediment microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR13_sedM3 DOE Joint Genome Institute (JGI) 3300037587 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Sediment sediment 47.7538 -127.7637 2199419392 5724551 1841 18 3462 18 SRX9096533 Unrestricted 12.12 Metagenome 3300006358 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 DOE Joint Genome Institute (JGI) 3300006358 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.405765 -85.399014 5445800727 15722142 4272 271 6990 489 SRX2740079, SRX2740080 Unrestricted 0.0 Metagenome 3300028973 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 274_B Beijing Genomics Institute (BGI) 3300028973 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 9323771 11469 11 0 16 0 ERX491057 0.0 Metagenome 3300009183 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG DOE Joint Genome Institute (JGI) 3300009183 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 48.2311 -71.2508 1213719321 2235555 615 44 907 97 SRX2996442 Unrestricted 0.0 Metagenome 3300040695 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_044-M-20160808-COMP-DNA1 Battelle Memorial Institute 3300040695 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 1199727 4051 6 0 18 0 0.0 Metagenome 3300035690 *Microbiome Permanent Draft Forest soil microbial communities from Eldorado National Forest, California, USA Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_CLV_1.2 DOE Joint Genome Institute (JGI) 3300035690 Metagenome Analysis metaspades v. 3.13.0 Yes Yes ndove7@gmail.com Nicholas Dove No Environmental Terrestrial Temperate forest Soil Bulk soil soil 38.7866 -120.4291 2325475568 5908117 1640 171 2926 329 SRX8239470 Unrestricted 8.26 Metagenome 3300025673 *Microbiome Permanent Draft Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico and Hudson Canyon, USA Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1B Hudson Canyon (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025673 Metagenome Analysis spades v. 3.11.1 Yes Yes mcredmond@uncc.edu Molly C. Redmond No Environmental Aquatic Cold seeps Marine Unclassified Methane seep mesocosm 39.55 -72.4 427815865 868912 275 11 421 15 SRX2754393 Unrestricted 0.0 Metagenome 3300025338 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE09Aug07 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025338 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 25781922 66727 20 22 47 68 SRX2565229 Unrestricted 0.0 Metagenome 3300027528 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027528 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 234846570 574857 257 106 516 192 SRX1985893, SRX1985892 Unrestricted 0.0 Metagenome 3300054049 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_16_40 re-annotation DOE Joint Genome Institute (JGI) 3300054049 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 427692381 780004 150 2 283 1 SRX3003647 0.0 Metagenome 3300011397 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT319_2 DOE Joint Genome Institute (JGI) 3300011397 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9779 -107.0025 149376054 372056 322 15 741 39 SRX3539336 Unrestricted 0.0 Metagenome 3300038990 *Microbiome Finished Crude oil contaminated agricultural soil mecrobial communities from various regions in India Soil microbial community of crude oil contaminated soil of Rudrasagar region, Asaam, India - R1 Eurofins Genomics India Pvt Ltd. 3300038990 Metagenome Analysis CLC Genomic workbench v. 9.5.2 released by JGI data releasing policy No Yes nanditadas753@gmail.com nandita das No Environmental Terrestrial Unclassified Soil Oil-contaminated Soil 26.9489 94.596 243412459 389062 84 2 135 3 0.0 Metagenome 3300038425 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P19_D10 DOE Joint Genome Institute (JGI) 3300038425 Metagenome Analysis metaspades v. 3.13.0 Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 854553959 1202394 278 1 406 4 SRX9472089 Unrestricted 32.45 Metagenome 3300048620 *Microbiome Permanent Draft Enriched green algae-associated microbial communities from Montana State University, Bozeman, MT, USA Enriched green algae-associated microbial communities from Montana State University, Bozeman, MT, USA - SLA04-IM-Rep1 DOE Joint Genome Institute (JGI) 3300048620 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes robin_g@montana.edu Robin Gerlach No Host-associated Algae Unclassified Green algae Unclassified green algae 45.6655 -111.0466 77998382 105234 16 2 23 9 Unrestricted 1329.41 Metagenome 3300045200 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_4_C DOE Joint Genome Institute (JGI) 3300045200 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 163993145 204754 91 2 125 1 Unrestricted 136.0 Metagenome 3300020473 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948) CEA Genoscope 3300020473 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -8.9632 -139.2276 1427411060 3219407 771 66 1418 165 0.0 Metagenome 3300042763 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with vegetation nearby in Columbia River, Washington, USA - GW-RW S3_10_20 NMDC pilot DOE Joint Genome Institute (JGI) 3300042763 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37228508 -119.2716818 101011420 258752 169 1 311 3 SRX2522723 0.0 Metagenome 3300042051 *Microbiome Permanent Draft Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - P_c22.9 Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042051 Metagenome Analysis Custom JGI assembly. Yes Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1247 -89.1411 843631212 852247 4 7 5 12 SRX5234778 0.0 Metagenome 3300006193 *Microbiome Permanent Draft Marine microbial communities from the West Antarctic Peninsula, for metatranscriptomic analysis Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA DOE Joint Genome Institute (JGI) 3300006193 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes mattcott@udel.edu Matthew Cottrell, Matthew T. Cottrell No Environmental Aquatic Coastal Marine Unclassified Marine -64.8156 -64.0406 800378802 2166585 382 15 787 35 SRX2848090 Unrestricted 0.0 Metagenome 3300020294 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556124-ERR599153) CEA Genoscope 3300020294 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 39.3757 19.4167 169365872 437226 156 6 285 10 0.0 Metagenome 3300030205 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from healthy individual in Ann Arbor, USA - MG100170 University of Michigan 3300030205 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 42.28 -83.74 25413193 48954 73 0 125 1 0.0 Metagenome 3300013603 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100775 University of Pennsylvania 3300013603 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4126197 9617 10 4 15 10 SRX756077 0.0 Metagenome 3300045495 *Microbiome Permanent Draft Florida Reef Tract Coral Disease Outbreak Coral surface microbial communities from Montastraea cavernosa, offshore reef, Ft. Lauderdale, FL, USA - McGNI -2 University of Florida 3300045495 Metagenome Analysis MEGAHIT v. 1.1.4 released per PI No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified coral surface 26.16 -80.1 155994264 236775 2 4 2 6 0.0 Metagenome 3300035219 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2018_1000m DOE Joint Genome Institute (JGI) 3300035219 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 50.0 -145.0 441080105 1105425 363 57 586 56 SRX8188510 Unrestricted 13.75 Metagenome 3300026816 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO21-B (SPAdes) DOE Joint Genome Institute (JGI) 3300026816 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 30792928 93630 72 5 107 12 SRX2575534 Unrestricted 0.0 Metagenome 3300045920 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P11SSC1_190916_i DOE Joint Genome Institute (JGI) 3300045920 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 1025988524 1568913 282 0 493 0 SRX20650681 Unrestricted 12.13 Metagenome 3300030490 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_3 DOE Joint Genome Institute (JGI) 3300030490 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 861776733 1777988 221 19 356 31 SRX5355668 Unrestricted 11.19 Metagenome 3300044612 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME22Sep2003-rr0966 DOE Joint Genome Institute (JGI) 3300044612 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 940130114 1418656 372 57 473 64 Unrestricted 21.21 Metagenome 3300009075 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015 DOE Joint Genome Institute (JGI) 3300009075 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wilkins.231@osu.edu, mike.wilkins@colostate.edu Michael Wilkins No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0956 -99.1001 1430594713 2772186 1071 74 1741 128 SRX2753770 Unrestricted 0.0 Metagenome 3300030087 *Microbiome Permanent Draft Human feces microbial communities from Tubingen, Germany Human feces microbial communities from Tubingen, Germany - C2 University of Tuebingen 3300030087 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 48.52 9.05 44480263 55681 47 0 74 0 0.0 Metagenome 3300028127 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Seawater microbial communities from Monterey Bay, California, United States - 49D DOE Joint Genome Institute (JGI) 3300028127 Metagenome Analysis spades v. 3.11.1 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 287180274 628791 218 56 294 65 SRX5171616 Unrestricted 19.72 Metagenome 3300044924 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_6_C DOE Joint Genome Institute (JGI) 3300044924 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 189698311 215116 105 1 119 1 Unrestricted 94.22 Metagenome 3300039066 *Microbiome Permanent Draft Freshwater lake viral communities from Lake Michigan, near Chicago, USA Freshwater lake viral communities from Lake Michigan, near Chicago, USA- 57Street140527.1V Genewiz Inc., Loyola University 3300039066 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.7904 -87.5781 20766512 40915 32 0 32 0 0.0 Metagenome 3300033134 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2 DOE Joint Genome Institute (JGI) 3300033134 Metagenome Analysis spades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified soil 26.5059 -80.2517 3931723015 7352040 1245 154 1977 254 SRX5666031 Unrestricted 11.08 Metagenome 3300042610 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Constrictotermes cavifrons from Petit Saut, French Guiana, France - Cx337 Eurofins MWG Operon 3300042610 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 5.071383 -53.039049 976569464 1013916 99 17 154 17 0.0 Metagenome 3300007798 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 160158126 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007798 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 133105520 158776 97 0 119 0 0.0 Metagenome 3300038571 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark Sewage microbial communities from wastewater treatment plant in Copenhagen, Denmark - 1537-PRJ1066-RD-Sewage-91_S4_L001 Technical University of Denmark 3300038571 Metagenome Analysis Yes Yes No Engineered Wastewater Unclassified Sewage Unclassified Sewage 55.640494 12.5058209 19531528 40888 101 1 165 1 ERX1584032 0.0 Metagenome 3300027666 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027666 Metagenome Analysis spades v. 3.11.1 Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Host-associated Plants Nodule Roots Unclassified Root nodules 34.0722 -118.4441 793626619 980833 66 41 75 77 SRX2752618 Unrestricted 0.0 Metagenome 3300001416 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 210-2 shallow-072012 DOE Joint Genome Institute (JGI) 3300001416 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 24009631 77111 69 13 146 27 SRX1987457 Unrestricted 0.0 Metagenome 3300027139 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepB_8h DOE Joint Genome Institute (JGI) 3300027139 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 122452648 252630 127 13 184 24 SRX5245185 Unrestricted 16.98 Metagenome 7000000130 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764042746 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000130 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 48829060 102258 0 0 0 0 0.0 Metagenome 3300001671 *Microbiome Permanent Draft Wastewater treatment plant microbial communities from Luxembourg NGK4rrna 3300001671 Metagenome Analysis idba-tran released by JGI data releasing policy No Yes magdalena.calusinska@list.lu Magdalena Calusinska No Engineered WWTP Unclassified Wastewater Unclassified Wastewater treatment plant 49.669961 6.038675 7.61 4358761 14275 3066 386 9970 691 0.0 Metagenome 3300009932 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R6 University of New South Wales 3300009932 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 91502119 165003 51 2 76 3 0.0 Metagenome 3300039317 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 615_4M Beijing Genomics Institute (BGI) 3300039317 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 36947301 50849 29 0 40 0 ERX491268 0.0 Metagenome 3300039946 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Temperate deciduous broadleaf forest soil microbial communities from Baltimore, USA - 008_R1_022417 University of Maryland 3300039946 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate deciduous broadleaf forest soil 39.34271667 -76.5994 19075070 55408 99 2 179 5 0.0 Metagenome 3300060667 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_073-M-20210623-comp-1 DOE Joint Genome Institute (JGI) 3300060667 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 45.825842 -121.960125 1515078457 2718795 424 153 761 191 Unrestricted 18.47 Metagenome 3300005980 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil leachate replicate DNA2013-203 DOE Joint Genome Institute (JGI) 3300005980 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Permafrost Soil 68.6137 -149.3144 521374007 1334911 577 20 908 46 SRX2739543 Unrestricted 0.0 Metagenome 3300017672 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - LG13-03 University of Michigan 3300017672 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu; sjackrel@ucsd.edu Vincent Denef; Sara Jackrel No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.76324 -84.405 34447743 45467 20 0 29 0 0.0 Metagenome 3300035008 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Tolypothrix carrinoi HA7290-LM1 and co-occurring heterotrophs from cave wall surface from Makauwahi cave, Kauai, Hawaii, United States - 20181107_10A DOE Joint Genome Institute (JGI) 3300035008 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Cave Deep subsurface Wall surface Cave wall surface 21.8887 -159.419 55096560 82838 19 1 23 1 SRX8239031 Unrestricted 193.65 Metagenome 3300008680 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763901136 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008680 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 200974149 297521 180 2 218 4 0.0 Metagenome 3300030069 *Microbiome Permanent Draft Chicken ceca and crop associated microbial communities from Bologna, Italy Chicken ceca associated microbial communities from Bologna, Italy - LSA_XT_30 University of Bologna 3300030069 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Birds Large intestine Digestive system Ceca Chicken ceca associated 44.26 11.28 15524260 33685 43 0 105 0 ERX2036391 0.0 Metagenome 3300034694 *Microbiome Permanent Draft Marine microbial communities from Baffin Bay, Canada Marine microbial communities from Baffin Bay, Canada - S117_20m Genome Quebec 3300034694 Metagenome Analysis Spades v. 3.12.0 released by JGI data releasing policy Yes Yes thomas.grevesse@gmail.com Thomas Grevesse No Environmental Aquatic Oceanic Marine Photic zone marine 77.19442 -77.077 549318408 1251381 217 164 375 308 0.0 Metagenome 3300041773 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from the Rocky Mountain Biological Laboratory (RMBL), Gothic, Colorado, United States - 2018WM_5C DOE Joint Genome Institute (JGI) 3300041773 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9595 -106.99 147184960 410507 190 7 375 13 SRX14810838 Unrestricted 8.46 Metagenome 3300042299 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06Jul2012-rr0447 DOE Joint Genome Institute (JGI) 3300042299 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 657747573 1079556 238 30 334 37 Unrestricted 21.49 Metagenome 3300014802 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS66_24 University of Hohenheim 3300014802 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 144168138 228495 97 1 157 2 0.0 Metagenome 3300005684 *Microbiome Permanent Draft Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia Enhanced biological phosphorus removal bioreactor viral communities from the University of Queensland, Australia - SBR4-V91805 Phage Sequencing University of Queensland 3300005684 Metagenome Analysis CLC 6.0 Released per Connor Skennerton (Sep 15, 2015) No Yes c.skennerton@gmail.com Connor Skennerton No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor lab-scale EBPR bioreactor -27.49999 153.012098 14319711 35773 1 1 5 5 0.0 Metagenome 3300024973 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_300_biof (SPAdes) DOE Joint Genome Institute (JGI) 3300024973 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioremediation Unclassified Thiocyanate Unclassified Wastewater bioreactor -33.936637 18.478905 137607266 182677 52 4 83 11 SRX2576693 Unrestricted 0.0 Metagenome 3300036795 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in California, United States - CAM_1 DOE Joint Genome Institute (JGI) 3300036795 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil 36.5 -121.8 2321236435 3572402 542 131 757 163 SRX8385156 Unrestricted 13.71 Metagenome 3300026704 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN606 (SPAdes) DOE Joint Genome Institute (JGI) 3300026704 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 18301989 53145 54 0 85 3 SRX3311857 Unrestricted 0.0 Metagenome 3300040732 *Microbiome Draft Metagenome of enrichment culture MWH-Canal-Kol6 Mixed culture microbial communities from University of Innsbruck, Austria - Rhodoluna lacicola MWH-Canal-Kol6-Cov35 University of Innsbruck 3300040732 Metagenome Analysis SPAdes v. 3.13.1 released by JGI data releasing policy No Yes martin.hahn@uibk.ac.at Martin Hahn No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Mixed culture 47.848543 13.3429 1454249 1459 1 0 1 0 0.0 Metagenome 3300034990 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0819U56 DOE Joint Genome Institute (JGI) 3300034990 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0387 295575695 760773 437 4 893 2 SRX8273518 Unrestricted 6.26 Metagenome 3300007501 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 764285508 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007501 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 160736200 221830 134 0 185 0 0.0 Metagenome 3300029174 *Microbiome Permanent Draft Aquariaum water viral communities from Chicago, USA Aquariaum water viral communities from Chicago, USA - Amazon Rising - AZ1 Michigan State University 3300029174 Metagenome Analysis released Yes Yes No Environmental Aquatic Unclassified Aquaculture Unclassified Aquarium water 41.87 -87.61 29749109 70072 137 4 347 4 0.0 Metagenome 3300070505 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_001-M-20180220-COMP-DNA1 Battelle Memorial Institute 3300070505 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.106602 -119.72024 2.26-6.81 7258149 23937 77 9 167 14 0.0 Metagenome 7000000352 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 763860675 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000352 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 189032240 308557 0 0 0 0 0.0 Metagenome 3300059466 *Microbiome Permanent Draft Sorghum rhizosphere and bulk soil microbial communities from University of Arizona Maricopa Agricultural Center, AZ, USA Soil microbial communities from sorghum plot in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15-20210518_a DOE Joint Genome Institute (JGI) 3300059466 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Agricultural land Soil Unclassified Soil 33.07735 -111.974819 328932062 888477 651 42 1132 63 Unrestricted 7.35 Metagenome 3300012108 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Club lake, Antarctica - Metagenome #312 DOE Joint Genome Institute (JGI) 3300012108 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5417 78.2467 83416154 151553 72 1 142 3 SRX3241685 Unrestricted 0.0 Metagenome 3300027875 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027875 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 1663750127 3507961 563 15 1008 23 SRX2933126 Unrestricted 0.0 Metagenome 3300006832 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159571453 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006832 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 102086521 143085 67 0 99 0 0.0 Metagenome 3300049504 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MC16 DOE Joint Genome Institute (JGI) 3300049504 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 7488093 19029 44 0 84 0 Unrestricted 49.89 Metagenome 3300050469 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - E3NW16 DOE Joint Genome Institute (JGI) 3300050469 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 88775591 169902 177 68 335 94 Unrestricted 19.54 Metagenome 3300041166 *Microbiome Finished Rumen microbial communities from grazing ruminants in the Qinghai-Tibetan Plateau, China Cattle rumen microbial community from the Qinghai-Tibetan Plateau, China - CS1 Shanghai Majorbio Bio-pharm Technology Co. 3300041166 Metagenome Analysis Velvet v. 3.3 released by JGI data releasing policy No Yes wg4@ualberta.ca Wei Guo No Host-associated Mammals Stomach Digestive system Rumen cattle rumen 37.12 102.51 896556626 1799648 860 25 1442 42 0.0 Metagenome 3300045912 *Microbiome Permanent Draft Microbial mat bacterial communities from hot springs in Waikite Valley, Taupo Volcanic Zone, New Zealand Microbial mat bacterial communities from hot spring in Waikite Valley, New Zealand - LMW_ETR_NZ_2018_Waikite_7_1 DOE Joint Genome Institute (JGI) 3300045912 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes LMWARD@post.harvard.edu Lewis Ward No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats microbial mat -38.3276 176.3016 987381631 1235375 393 6 517 17 Unrestricted 36.81 Metagenome 3300025249 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP1202 (SPAdes) DOE Joint Genome Institute (JGI) 3300025249 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -30.33 103.31 110056245 208700 126 5 215 8 SRX1982558 Unrestricted 0.0 Metagenome 3300036846 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Eucalyptus forests in New South Wales, Australia - Eu_5 DOE Joint Genome Institute (JGI) 3300036846 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Tropical forest Soil Bulk soil soil -33.6 150.0 1551146671 2481566 376 13 549 18 SRX8386387 Unrestricted 15.63 Metagenome 3300020028 *Microbiome Permanent Draft Freshwater viral communities from Chicago Sanitary Ship Canal, USA Freshwater viral communities from Kaskaskia Canyon in Starved Rock State Park, Illinois, USA - 2 University of Illinois-Urbana Champaign 3300020028 Metagenome Analysis SPADES v3.10.1 released by JGI data releasing policy No Yes wtliu@illinois.edu Wen-Tso Liu No Environmental Aquatic River Freshwater Unclassified Freshwater 41.307262 -88.945061 27831654 42765 10 0 14 0 0.0 Metagenome 3300011502 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00679 Weill Cornell Medical College 3300011502 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.78 -73.98 5257608 5502 4 2 8 4 SRX822646 0.0 Metagenome 3300042914 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME10Sep2001-rr0225 DOE Joint Genome Institute (JGI) 3300042914 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1102197635 1643573 419 38 558 63 Unrestricted 15.88 Metagenome 3300012436 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100504 University of Pennsylvania 3300012436 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 6163840 17720 13 0 15 3 SRX756494 0.0 Metagenome 3300044620 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME30Jul2009-rr0967 DOE Joint Genome Institute (JGI) 3300044620 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1156686754 1771680 466 81 598 122 Unrestricted 22.04 Metagenome 3300005890 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_104 DOE Joint Genome Institute (JGI) 3300005890 Metagenome Analysis MEGAHIT v. 0.2.0 Released on PI's request Yes Yes sgtringe@lbl.gov Susannah Tringe Yes 28731470 Environmental Terrestrial Paddy field/soil Soil Unclassified Rice paddy soil 38.1087 -121.653 246463201 856669 421 5 815 23 SRX2564779, SRX2581045 Unrestricted 0.0 Metagenome 3300070446 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_002-M-20180531-COMP-DNA1 3300070446 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 9819151 30323 94 9 160 8 0.0 Metagenome 3300048612 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT_PTT1_AUG19_120cm DOE Joint Genome Institute (JGI) 3300048612 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9883 -108.4003 363936717 805872 524 4 1025 4 Restricted 11.69 Metagenome 3300025852 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Incubations 011-22A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025852 Metagenome Analysis spades v. 3.11.1 Yes Yes mlharmon_smith@lbl.gov; janet.jansson@pnnl.gov Miranda Harmon-Smith; Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.270939 -156.810374 685990306 1401227 428 4 690 8 SRX1990925 Unrestricted 0.0 Metagenome 3300031364 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - SW1603-30 DOE Joint Genome Institute (JGI) 3300031364 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.722 -70.891 668798643 1401789 520 0 871 6 SRX5359057 Unrestricted 10.0 Metagenome 3300022429 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Herschel Lake, Rottnest Island (WA - Australia) - HL1BM1 JM76 AGRF 3300022429 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.996565 115.531482 62212486 104244 43 0 64 0 0.0 Metagenome 3300022854 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #141 DOE Joint Genome Institute (JGI) 3300022854 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 189382169 351983 142 0 235 0 SRX4396708 Unrestricted 16.37 Metagenome 3300037808 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI147_2018_nov_120m DOE Joint Genome Institute (JGI) 3300037808 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5916 -123.505 642489234 1234867 344 33 598 55 SRX9402695 Unrestricted 16.84 Metagenome 3300042137 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913F_E14_072516_1519 DOE Joint Genome Institute (JGI) 3300042137 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.1836 -97.9974 241501630 653239 289 11 507 17 Unrestricted 7.94 Metagenome 3300057001 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Biomass microbial communities from acid-phase anaerobic digester in WWTP, Madison, WI, USA - 20210507_SampleB DOE Joint Genome Institute (JGI) 3300057001 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Sludge Anaerobic digester Unclassified Biomass 43.03331 -89.35633 1025398098 1602934 782 13 1114 22 Unrestricted 0.0 Metagenome 3300019730 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLT_7-8_MG DOE Joint Genome Institute (JGI) 3300019730 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Sediment sediment 38.7906 -75.1638 122831759 302524 205 37 392 53 SRX3983469 Unrestricted 3.95 Metagenome 3300028003 *Microbiome Permanent Draft Soil microbial communities from hillslopes of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 2-2-E_N DOE Joint Genome Institute (JGI) 3300028003 Metagenome Analysis spades v. 3.11.1 Yes Yes laurameredith@email.arizona.edu Laura Meredith No Engineered Artificial ecosystem Soil Mesocosm Unclassified soil 32.5788 -110.8509 70956058 176872 76 0 141 3 SRX5245794 Unrestricted 120.61 Metagenome 3300011467 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00910 Weill Cornell Medical College 3300011467 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.74 -73.89 16037313 24889 10 0 16 0 SRX822873 0.0 Metagenome 3300028795 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_1 DOE Joint Genome Institute (JGI) 3300028795 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 934787555 1957563 435 126 597 197 SRX5355869 Unrestricted 0.0 Metagenome 3300048585 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Sediment microbial communities from freshwater Prado Wetlands in Corona, California, USA - ZJ_Prado_148 DOE Joint Genome Institute (JGI) 3300048585 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mhuntemann@lbl.gov; jsharp@mines.edu Marcel Huntemann; Jonathan Sharp No Environmental Aquatic Wetlands Freshwater Sediment Sediment 33.919031 -117.617686 1795502486 2843677 598 64 909 83 Unrestricted 26.67 Metagenome 3300038704 *Microbiome Permanent Draft Mine wastewater microbial communities from active nickel and copper mine in Ontario, Canada Mine wastewater microbial communities from active nickel and copper mine in Ontario, Canada - Reservoir_2m_Nov Banfield Lab, University of California, Berkeley 3300038704 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Mine water Industrial wastewater Unclassified mine wastewater 46.983333 -81.533333 68827097 86739 31 2 50 3 0.0 Metagenome 3300008616 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human throat microbial communities from NIH, USA - visit 1, subject 763577454 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300008616 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human 8444577 18889 19 0 40 1 SRX024968 0.0 Metagenome 3300029198 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012067-35 Beijing Genomics Institute (BGI) 3300029198 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 118227023 141631 92 1 137 5 0.0 Metagenome 3300008471 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763759525 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008471 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 43056208 81061 32 0 54 0 0.0 Metagenome 3300069299 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_003-O-20210805-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069299 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tundra Soil Unclassified Terrestrial soil 68.640255 -149.642461 1673591034 4090741 1136 40 2056 47 0.0 Metagenome 3300031516 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20051001_T9 DOE Joint Genome Institute (JGI) 3300031516 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 324559104 655927 213 0 343 0 SRX5650954 Unrestricted 195.45 Metagenome 3300049007 *Microbiome Permanent Draft Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA Soil microbial communities from Holy Fire Burn scar, Cleveland National Forest, California, USA - CNF2ST9 DOE Joint Genome Institute (JGI) 3300049007 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sydneyg@ucr.edu Sydney Glassman No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 33.6953 -117.4713 870503224 1539076 379 20 657 41 Unrestricted 16.51 Metagenome 3300046836 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 soil DOE Joint Genome Institute (JGI) 3300046836 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121608 -123.269447 5.12 1488708666 2322961 368 14 573 20 Unrestricted 13.83 Metagenome 2081372006 *Microbiome Draft Soil microbial communities from FACE and OTC sites in USA Soil microbial communities from sample at FACE Site NTS_071 Nevada Test Site DOE Joint Genome Institute (JGI) 2081372006 Metagenome Analysis Newbler v. 2.5 released based on JGI ITS No Yes kuske@lanl.gov Cheryl Kuske No Environmental Terrestrial Sand Soil Desert Soil 36.766667 -115.95 336899453 834896 0 0 0 0 Unrestricted 0.0 Metagenome 7000000617 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 763759525 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000617 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 2200957 4757 0 0 0 0 0.0 Metagenome 3300031649 *Microbiome Permanent Draft Soil and ectomycorrhiza microbial communities from Populus trichocarpa stands in riparian zones in the Pacific Northwest, United States Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM DOE Joint Genome Institute (JGI) 3300031649 Metagenome Analysis spades v. 3.12.0 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Plants Unclassified Roots Unclassified ectomycorrhiza 46.6253 -120.532 1397197881 2278771 320 124 446 177 SRX5650755 Unrestricted 20.18 Metagenome 3300005916 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKL DOE Joint Genome Institute (JGI) 3300005916 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli, Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 761641541 1759659 673 4 1146 5 SRX2747199 Unrestricted 0.0 Metagenome 3300005347 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG DOE Joint Genome Institute (JGI) 3300005347 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 5254781470 14313033 3789 467 6299 829 SRX2740291 Unrestricted 0.0 Metagenome 3300001162 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 DOE Joint Genome Institute (JGI) 3300001162 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 30428774 92017 116 31 209 40 SRX3312029 Unrestricted 0.0 Metagenome 3300029353 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 050_3_13_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029353 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 199367441 237140 233 0 284 0 0.0 Metagenome 3300061655 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0200 Microbiome Insights 3300061655 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 379337404 535172 104 5 144 8 0.0 Metagenome 3300026188 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV43 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026188 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 297365267 576929 192 0 303 0 SRX2781816 Unrestricted 0.0 Metagenome 3300027297 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes) DOE Joint Genome Institute (JGI) 3300027297 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 172829517 449069 109 21 222 26 SRX2013848 Unrestricted 0.0 Metagenome 3300000736 *Microbiome Permanent Draft Freshwater and sediment microbial communities from a dead zone in Lake Erie, USA Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 DOE Joint Genome Institute (JGI) 3300000736 Metagenome Analysis Yes Yes rmmckay@bgsu.edu Robert McKay, Robert M. McKay No Environmental Aquatic Lentic Freshwater Epilimnion Freshwater and sediment 41.77 -81.73 227393103 555384 203 141 383 223 SRX3311440 Unrestricted 0.0 Metagenome 3300060296 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.20W.11 SIP fraction DOE Joint Genome Institute (JGI) 3300060296 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 449587510 790758 172 12 251 20 Unrestricted 0.0 Metagenome 3300045559 *Microbiome Draft Lake microbial communities from Canada Lake sediment microbial communities from the Boreal Plains ecozone, Canada - Lake 10-597 Genome Quebec 3300045559 Metagenome Analysis MEGAHIT v1.0.6 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Lake Sediment 53.623604 -113.95501 130593712 182684 87 12 152 13 0.0 Metagenome 3300001480 *Microbiome Permanent Draft Sheep rumen microbial communities from New Zealand from high and low methane emitting sheep Sheep rumen microbial communities from New Zealand - Rank13_low DOE Joint Genome Institute (JGI) 3300001480 Metagenome Analysis Velvet Released because these are assemblies from SRA data No Yes janine.kamke@agresearch.co.nz, janine.kamke@uni-wuerzburg.de Janine Kamke No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen -40.352 175.608 320108887 665583 639 31 1017 54 0.0 Metagenome 3300000971 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP2052 DOE Joint Genome Institute (JGI) 3300000971 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 15.91 -124.49 22232639 53359 30 10 44 15 SRX1982394 Unrestricted 0.0 Metagenome 3300014179 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Indonesia to Iowa, USA - IO7 Iowa State University 3300014179 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 4665497 9008 0 3 0 2 SRX1150294 0.0 Metagenome 3300002568 *Microbiome Permanent Draft Soil microbial communities from Mediterranean grasslands, California Grasslands soil microbial communities from Hopland, California, USA - 2 (version 3) DOE Joint Genome Institute (JGI) 3300002568 Metagenome Analysis released based on JGI ITS Yes Yes elbrodie@lbl.gov, ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 38.99297339 -123.0674491 7938673520 23205722 13554 1106 27477 1806 SRX1978715, SRX1978704, SRX1978714, SRX1978706, SRX1978705, SRX1978716, SRX1978707, SRX1978709, SRX2041365, SRX2041364, SRX1978711, SRX1978710, SRX1978713 Unrestricted 0.0 Metagenome 3300003150 *Microbiome Permanent Draft Switchgrass adapted compost microbial communities from mini bioreactor at UC Davis Switchgrass adapted compost from mini bioreactor at UC Davis - Sample Bioreactor compost DOE Joint Genome Institute (JGI) 3300003150 Metagenome Analysis released based on JGI ITS No Yes jmgladden@lbl.gov, JMGladden@lbl.gov John Gladden No Engineered Solid waste Composting Grass Bioreactor Switchgrass adapted compost 38.546 -121.7533 104091772 264942 135 8 230 17 Unrestricted 0.0 Metagenome 3300020720 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 hypolimnion DOE Joint Genome Institute (JGI) 3300020720 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu; rrmalmstrom@lbl.gov Katherine McMahon; Rex Malmstrom Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 118262174 244608 111 15 142 21 Unrestricted 0.0 Metagenome 3300023192 *Microbiome Permanent Draft Deep ocean water column microbial communities from Yap Trench, western Pacific Ocean Seawater microbial communities from Yap Trench, western Pacific Ocean - 37I-Yap-CTD02-5000m Third Institute of Oceanography, State Oceanic Administration 3300023192 Metagenome Analysis idba v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Abyssopelagic Marine Unclassified seawater 9.87 138.5 408280650 546456 82 4 92 6 0.0 Metagenome 3300030360 *Microbiome Permanent Draft Activated sludge microbial communities from CSTR anaerobic reactor in Belvaux, Luxembourg Activated sludge microbial communities from CSTR anaerobic reactor in Belvaux, Luxembourg - CSTR_M40 Luxembourg Institute of Science and Technology 3300030360 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Engineered Bioreactor Unclassified Anaerobic Unclassified Activated sludge 49.508281 5.943742 32644885 50439 67 0 97 0 0.0 Metagenome 3300030742 *Microbiome Permanent Draft Wheat crown rot disease influences the structure and diversity of wheat-associated microbiome Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 University of Western Sydney 3300030742 Metagenome Analysis MEGAHIT v. 1.0 released by JGI data releasing policy No Yes h.liu2@westernsydney.edu.au hongwei liu No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soils -27.565194 151.864444 129589074 291187 229 12 399 17 0.0 Metagenome 3300039021 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - WEM-3_at_9-10_cm Genome Quebec 3300039021 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89896 -73.80984 408611640 1026654 518 9 1145 3 0.0 Metagenome 3300069610 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_002-M-20160721-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069610 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 10236415 36889 44 5 59 5 0.0 Metagenome 3300002515 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Incubations 011-21A DOE Joint Genome Institute (JGI) 3300002515 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov, mlharmon_smith@lbl.gov; janet.jansson@pnnl.gov Janet Jansson, Miranda Harmon-Smith; Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.270939 -156.810374 325064173 701131 358 4 620 11 SRX1990923 Unrestricted 0.0 Metagenome 3300042686 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A59 University of California, Davis 3300042686 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 266062457 728275 321 5 596 12 0.0 Metagenome 3300027621 *Microbiome Permanent Draft Freshwater lentic microbial communities from the great Laurentian Lakes, MI, USA for biogeochemical studies Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF (SPAdes) DOE Joint Genome Institute (JGI) 3300027621 Metagenome Analysis spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified Freshwater lentic 44.504638 -83.045851 369140748 766350 200 31 295 57 SRX2577344 Unrestricted 0.0 Metagenome 3300011489 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01108 Weill Cornell Medical College 3300011489 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.66 -73.92 17296551 27657 9 0 13 0 SRX823063 0.0 Metagenome 3300004170 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 50_LOW8 DOE Joint Genome Institute (JGI) 3300004170 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 70326727 183174 46 1 82 0 SRX2720582 Unrestricted 0.0 Metagenome 3300013159 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100642 University of Pennsylvania 3300013159 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 20783231 50167 22 0 46 0 SRX756452 0.0 Metagenome 3300009905 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S9 University of New South Wales 3300009905 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 41626688 70578 20 4 26 7 0.0 Metagenome 3300034816 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 DOE Joint Genome Institute (JGI) 3300034816 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 39.6589 -79.9058 520771632 1437976 608 56 1112 92 SRX8289100 Unrestricted 6.31 Metagenome 3300066289 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_047-O-20160816-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066289 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 23505211 73835 76 8 139 17 0.0 Metagenome 3300007090 *Microbiome Permanent Draft Freshwater lake microbial communities from Singapore - a non-axenic Oscillatoriales culture Freshwater lake microbial communities from Singapore - a non-axenic Oscillatoriales culture The Singapore Centre on Environmental Life Sciences Engineering 3300007090 Metagenome Analysis CLC Genomics Workbench 8 released per JGI data release policy No Yes boonfei@ualberta.ca BOONFEI TAN No Environmental Aquatic Lake Freshwater Unclassified freshwater lake 1.402391 103.800715 2520968048 10547916 4934 69 9188 10 0.0 Metagenome 3300009673 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA7_MetaG DOE Joint Genome Institute (JGI) 3300009673 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 37.43 138.83 850613338 1482199 767 6 1157 8 SRX2338991 Unrestricted 0.0 Metagenome 3300013793 *Microbiome Permanent Draft Wastewater microbial communities from municipal sewage treatment plants in Nanjing, China Wastewater microbial communities from municipal sewage treatment plant in Nanjing, China - WX_AS_meta Nanjing University 3300013793 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 83325715 224566 34 0 71 1 SRX425466 0.0 Metagenome 3300006805 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA DOE Joint Genome Institute (JGI) 3300006805 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 1466787697 3404364 692 115 1122 175 SRX2854010 Unrestricted 0.0 Metagenome 3300027052 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Salt pond sediment microbial community from Fremont, CA, USA - Pond A23 Sediment 3 (SPAdes) DOE Joint Genome Institute (JGI) 3300027052 Metagenome Analysis spades v. 3.11.1 Yes Yes kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Salt pond 37.472483 -121.97315 165020964 305729 166 4 269 9 SRX3304854 Unrestricted 0.0 Metagenome 3300043211 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_100m_C4_0cm5cm (coverage test 8Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043211 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 37.1343 -121.4557 150683810 244141 90 2 144 5 SRX9141054 Unrestricted 74.47 Metagenome 3300013005 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG DOE Joint Genome Institute (JGI) 3300013005 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.099 -89.405 1866105563 3825763 968 186 1542 273 SRX3565943 Unrestricted 13.11 Metagenome 3300046313 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_70 DOE Joint Genome Institute (JGI) 3300046313 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 497164224 1199282 1032 195 1986 278 Restricted 0.0 Metagenome 3300065502 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume viral communities from North Pacific Ocean - CTD-AT42-06-002-1000m-0.03 v DOE Joint Genome Institute (JGI) 3300065502 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 8.39977 -104.9807 243314388 686984 74 24 119 33 Restricted 38.9 Metagenome 3300011535 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00983 Weill Cornell Medical College 3300011535 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.59 -73.8 25161824 33770 9 1 27 0 SRX822945 0.0 Metagenome 3300037401 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_C1 DOE Joint Genome Institute (JGI) 3300037401 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 413733600 918007 184 43 372 68 SRX9087656 Unrestricted 6.57 Metagenome 3300007774 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159611913 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007774 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 15588995 29933 19 0 35 0 0.0 Metagenome 3300056928 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - LS01-2021-002 DOE Joint Genome Institute (JGI) 3300056928 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 433386387 446448 148 12 155 12 Unrestricted 31.96 Metagenome 3300025183 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP2016 (SPAdes) DOE Joint Genome Institute (JGI) 3300025183 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 18.04 -133.26 91638870 182191 88 1 162 4 SRX1982298 Unrestricted 0.0 Metagenome 3300011148 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00564 Weill Cornell Medical College 3300011148 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.67 -73.91 16656399 22598 10 2 14 1 SRX822531 0.0 Metagenome 3300003332 *Microbiome Permanent Draft Marine hydrothermal vent sediment microbial communities from Guaymas Basin, Gulf of California Marine hydrothermal vent sediment microbial communities from Guaymas Basin, Gulf of California - Sample 1 3300003332 Metagenome Analysis IDBA_UD released by JGI data releasing policy No Yes limeng848@gmail.com Guaymas sediment, MENG LI No Environmental Aquatic Hydrothermal vents Marine Sediment Marine hydrothermal vent sediment 27.01 -111.43 389261994 580458 332 8 534 0 0.0 Metagenome 3300049771 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I14_B_4_control DOE Joint Genome Institute (JGI) 3300049771 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 92264930 215415 236 16 491 24 Unrestricted 13.66 Metagenome 3300041412 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P21_D5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300041412 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 680340333 960944 165 3 239 6 SRX10167246 Unrestricted 0.0 Metagenome 3300053165 *Microbiome Permanent Draft Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA Soil microbial communities from Los Alamos National Laboratory, New Mexico, USA - S53_B_D45 hydrophobic DOE Joint Genome Institute (JGI) 3300053165 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Soil Unclassified Soil 35.88 -106.3031 493228759 733770 278 1 348 1 Restricted 0.0 Metagenome 3300012542 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100563 University of Pennsylvania 3300012542 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8595422 15719 10 6 21 9 SRX756191 0.0 Metagenome 3300025075 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - 4B3 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025075 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 41.6655 -87.5437 13-14 27510368 73917 9 8 9 10 Unrestricted 0.0 Metagenome 3300017933 *Microbiome Permanent Draft Coastal wetland sediment microbial communities from the Mid-Atlantic and Southeast Atlantic Coast of USA, responding to salinity intrusion. Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1 DOE Joint Genome Institute (JGI) 3300017933 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Freshwater sediment 35.9061 -76.1569 740673025 1593048 416 1 733 6 SRX4367122 Unrestricted 5.16 Metagenome 3300070532 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Santa Rita Experimental Range, Arizona, USA - SRER_053-M-20180801-COMP-DNA1 Battelle Memorial Institute 3300070532 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 31.909824 -110.835912 9.04-9.14 40911688 123570 119 2 251 0 0.0 Metagenome 3300053118 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere DOE Joint Genome Institute (JGI) 3300053118 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.588202 -123.193144 552896948 1120362 357 115 567 148 Unrestricted 9.16 Metagenome 3300002755 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK07-A DOE Joint Genome Institute (JGI) 3300002755 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.43 -89.41 108568 321 35 2 59 4 SRX1991350 Unrestricted 0.0 Metagenome 3300040705 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_021-M-20140327-COMP-DNA1 Argonne National Laboratory 3300040705 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 1121591 3248 22 5 36 9 ERX2133959 0.0 Metagenome 3300043144 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8NT15 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043144 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 44385425 126194 104 5 165 10 SRX8379641 Unrestricted 17.11 Metagenome 3300035700 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Laternula Lake, Antarctica - #68 Australian Centre for Ecogenomics 3300035700 Metagenome Analysis Spades v. 3.12.0 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.648783 77.959717 218425911 428915 120 6 192 7 0.0 Metagenome 3300040093 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Healy, Taiga, AK, USA - HEAL_004-O-20170726-COMP-DNA1 Battelle Memorial Institute 3300040093 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.87569 -149.21334 12722072 36601 66 6 114 11 0.0 Metagenome 3300059421 *Microbiome Permanent Draft Sorghum rhizosphere and bulk soil microbial communities from University of Arizona Maricopa Agricultural Center, AZ, USA Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 DOE Joint Genome Institute (JGI) 3300059421 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes laurameredith@email.arizona.edu Laura Meredith No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 33.07735 -111.974819 418439493 1044166 557 12 1041 22 Unrestricted 7.5 Metagenome 3300048439 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_130206.NP1 DOE Joint Genome Institute (JGI) 3300048439 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 829565694 1878018 558 133 852 215 Unrestricted 12.58 Metagenome 3300001825 *Microbiome Permanent Draft Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM36, ROCA_DNA221_2.0um_bLM_C_3b 3300001825 Metagenome Analysis released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Lotic Freshwater Unclassified Marine plankton -1.519367 -48.91795 19123216 39698 13 4 27 16 0.0 Metagenome 3300032263 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Coastal sediment microbial communities from Maine, United States - Phippsburg sediment 1 DOE Joint Genome Institute (JGI) 3300032263 Metagenome Analysis spades v. 3.13.0 Yes Yes jbeam@bigelow.org; demerson@bigelow.org Jake Beam; David Emerson No Environmental Aquatic Coastal Marine Sediment sediment 43.8293 -69.8133 1629614226 3851542 1435 77 2405 119 SRX5822355 Unrestricted 7.03 Metagenome 3300034079 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B1A4.2 DOE Joint Genome Institute (JGI) 3300034079 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 323009783 799683 444 0 778 0 SRX7658931 Unrestricted 8.17 Metagenome 3300065504 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume viral communities from North Pacific Ocean - CTD-AT42-06-009-32m-0.03-B v DOE Joint Genome Institute (JGI) 3300065504 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 9.83899 -104.29088 156539459 439324 52 7 75 16 Restricted 0.0 Metagenome 3300007265 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 DOE Joint Genome Institute (JGI) 3300007265 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield No Host-associated Plants Rhizosphere Roots Soil Vadose zone soil 39.7291 -123.6419 1021255251 2016369 513 31 896 64 SRX2933099 Unrestricted 0.0 Metagenome 3300060780 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_003-M-20210622-comp-1 DOE Joint Genome Institute (JGI) 3300060780 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Temperate forest Soil Unclassified Terrestrial soil 45.831516 -122.018608 2081512039 3450446 460 92 764 120 Unrestricted 16.22 Metagenome 3300036850 *Microbiome Permanent Draft Soil microbial communities from fields in the western Corn Belt region, Nebraska, United States Metatranscriptome of soil microbial communities from fields in the western Corn Belt region, Nebraska, United States - Switchgrass plot 121, no N, depth 1 DOE Joint Genome Institute (JGI) 3300036850 Metagenome Analysis metaspades v. 3.13.0 Yes Yes marty.schmer@ars.usda.gov Marty Schmer No Environmental Terrestrial Agricultural land Soil Unclassified soil 41.1673 -96.4119 1721266736 2864027 517 4 906 5 SRX8380215 Unrestricted 13.08 Metagenome 3300070261 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lyndon B. Johnson National Grassland, Texas, USA - CLBJ_003-M-20180411-COMP-DNA1 3300070261 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 13092231 42709 78 3 127 8 0.0 Metagenome 3300037061 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 715 E1 1-5 DOE Joint Genome Institute (JGI) 3300037061 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.047 503233873 1011351 339 10 560 10 SRX10080649 Unrestricted 8.57 Metagenome 3300026909 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 23 (SPAdes) DOE Joint Genome Institute (JGI) 3300026909 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 66852824 163031 71 0 145 4 SRX4340128 Unrestricted 0.0 Metagenome 3300013418 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100175 University of Pennsylvania 3300013418 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3489760 5937 3 4 2 6 SRX756358 0.0 Metagenome 3300027054 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW36 contaminated, 6.7 m (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027054 Metagenome Analysis spades v. 3.11.1 Yes Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.292222 -73.604444 32964599 81354 203 2 211 7 Unrestricted 0.0 Metagenome 3300007218 *Microbiome Permanent Draft Insights gained from metagenomic shotgun sequencing of apple fruit epiphytic microbiota Pinova apple microbial communities from Italy Illumina 3300007218 Metagenome Analysis Velvet released per JGI data release policy No Yes sarerazack@icloud.com Abdoul Razack SARE No Host-associated Plants Carposphere Phyllosphere Unclassified Fruit 258270869 438069 14 1 40 16 0.0 Metagenome 3300029661 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37207R1 Beijing Genomics Institute (BGI) 3300029661 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 125901868 145567 100 0 139 0 0.0 Metagenome 3300013465 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100291 University of Pennsylvania 3300013465 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14777220 35544 20 0 21 0 SRX756610 0.0 Metagenome 3300033059 *Microbiome Permanent Draft Microbial communities from various environments in Magnetic Island Reef, Townsville, Australia Sponge tissue microbial communities from Magnetic Island Reef, Townsville, Australia - 36388 AGRF 3300033059 Metagenome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes b.glasl@aims.gov.au Bettina Glasl No Host-associated Porifera Unclassified Sponge Unclassified Sponge tissue -19.1531 146.8641 299358231 640189 138 3 191 5 0.0 Metagenome 3300022183 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3) (version 3) DOE Joint Genome Institute (JGI) 3300022183 Metagenome Analysis spades v. 3.11.1-check Yes Yes chenf@umces.edu; bcampb7@clemson.edu Feng Chen; Barbara Campbell Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.12 -75.25 202140040 531462 0 0 0 0 SRX3301140, SRX2838766, SRX3301139 Unrestricted 0.0 Metagenome 3300006563 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764285508 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006563 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 71467115 140151 69 0 101 0 0.0 Metagenome 3300049148 *Microbiome Permanent Draft Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama Forest soil microbial communities from Buena Vista Peninsula, Colon Province, Panama - S058_CH15_fluctuating_T2 DOE Joint Genome Institute (JGI) 3300049148 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes njbouskill@lbl.gov Nicholas Bouskill No Environmental Terrestrial Tropical forest Soil Bulk soil Soil 9.17936 -79.8296 728598871 1969645 398 8 777 14 Unrestricted 7.45 Metagenome 3300026229 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Maryland, USA - DAQMD-024 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026229 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 50563251 96513 68 7 111 15 SRX2770400 Unrestricted 0.0 Metagenome 3300070450 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Utah, USA - ONAQ_042-M-20190619-COMP-DNA1 3300070450 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 947533 3245 17 1 42 3 0.0 Metagenome 3300007772 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS914_Anemone_DNA CLC_assembly Marine Biological Laboratory 3300007772 Metagenome Analysis CLC genomics workbench, v. 7.0 released by Caroline Fortunato No Yes cfortunato@mbl.edu, cfortunato@gmail.com; randerson@carleton.edu; elks@mit.edu Caroline Fortunato, Caroline Fortunato; Rika Anderson; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse vent fluid, hydrothermal vents 45.933177 -130.013868 352299040 642339 151 2 293 9 0.0 Metagenome 3300021209 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge Cinachyra sp. associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - cg23is 200bp-microeukaryotes University of New South Wales 3300021209 Metagenome Analysis IDBA-UD released by JGI data releasing policy Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Cinachyra sp. (marine sponge) -9.8241 150.825833 446341 899 0 0 0 0 0.0 Metagenome 3300011771 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00311 Weill Cornell Medical College 3300011771 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.72 -74.0 37815000 56994 16 0 21 0 SRX822284 0.0 Metagenome 3300041414 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P10_D2 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300041414 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 995520309 1590368 298 62 471 77 SRX10167075 Unrestricted 0.0 Metagenome 3300011936 *Microbiome Permanent Draft Human oral microbial communities from Los Angeles, CA, USA Human oral microbial communities from Los Angeles, CA, USA - S01-06-R University of California, Los Angeles 3300011936 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human oral 34.0722 -118.4441 115238576 179565 88 1 119 0 SRX861047 0.0 Metagenome 3300026735 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day23 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026735 Metagenome Analysis spades v. 3.11.1 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 39.849 -81.036 14162303 31451 31 0 46 0 SRX2996505 Unrestricted 0.0 Metagenome 3300050300 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_62 DOE Joint Genome Institute (JGI) 3300050300 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -75.858 159.974 675036938 1091166 169 50 215 47 SRX18236990 Restricted 25.69 Metagenome 3300012544 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100346 University of Pennsylvania 3300012544 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9461678 16446 7 1 6 2 SRX756311 0.0 Metagenome 2209111015 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Tailings pond microbial communities from Northern Alberta -TP6_2008_2010: McGill University 2209111015 Metagenome Analysis released per user request No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Built environment Petrochemical Tailings pond Wastewater Hydrocarbon resource environments 57.02 -111.55 232102284 638670 257 0 495 0 0.0 Metagenome 3300003334 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK03-B DOE Joint Genome Institute (JGI) 3300003334 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 971907 3068 30 4 38 7 SRX2575244 Unrestricted 0.0 Metagenome 3300020131 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20-13C DOE Joint Genome Institute (JGI) 3300020131 Metagenome Analysis spades v. 3.10.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.3049 -116.2547 187019236 409296 325 10 506 24 SRX3936392 Unrestricted 45.07 Metagenome 3300004206 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 20_HOW5 DOE Joint Genome Institute (JGI) 3300004206 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 133554082 349004 101 14 188 25 SRX2720160 Unrestricted 0.0 Metagenome 3300042719 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - N_b19.1 Re-assembly Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042719 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1241 -89.1401 55776002 53996 6 1 11 5 SRX5234794 0.0 Metagenome 3300022075 *Microbiome Permanent Draft Deep subsurface rock core microbial communities from Deccan traps, Ukhalu, Maharashtra, India Deep subsurface rock core microbial communities from Deccan traps, Ukhalu, Maharashtra, India - U11_55 trimmed_55 Marine Biological Laboratory 3300022075 Metagenome Analysis Spades 3.11.1 released by JGI data releasing policy No Yes avishekdutta14@gmail.com Avishek Dutta No Environmental Terrestrial Rock Deep subsurface Unclassified Deep subsurface rock core 17.125867 73.869133 905261656 2065844 207 38 484 79 0.0 Metagenome 3300048896 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Soil microbial communities from greenhouse in W.K. Kellogg Biological Station, Michigan, USA - KLW soil_8t unlabeled DOE Joint Genome Institute (JGI) 3300048896 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Environmental Terrestrial Unclassified Soil Unclassified Soil 42.40581 -85.40228 1817243391 2974372 636 33 1003 46 Unrestricted 13.19 Metagenome 3300005755 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS849 Marine Biological Laboratory 3300005755 Metagenome Analysis Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow diffuse flow hydrothermal vent 18.376687 -81.798096 7.13 380429 494 0 0 1 0 0.0 Metagenome 2065487013 *Microbiome Permanent Draft Fungus-growing Termite worker microbial community from South Africa Fungus-growing termite worker microbial communities from South Africa - Oerleman's Farm DOE Joint Genome Institute (JGI) 2065487013 Metagenome Analysis Newbler Released on Tijana's request (11-25-2014) No Yes gsuen@wisc.edu Garret Suen Yes 25406380 Host-associated Arthropoda: Insects Hindgut Digestive system Unclassified Fungus-growing Termite worker -24.6867 28.79722 142578830 359783 116 0 182 0 0.0 Metagenome 3300061108 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIF5SW PMA-treated Jet Propulsion Laboratory, California Institute of Technology 3300061108 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 29.5517 -95.0985 10838518 10858 6 3 14 5 SRX3808542, SRX2249357, SRX2249354, SRX3808515 0.0 Metagenome 3300070534 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt-Chequamegon, Wisconsin, USA - STEI_008-M-20170705-COMP-DNA1 Battelle Memorial Institute 3300070534 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 45.802505 -90.062109 5.29-5.73 10692619 34156 54 4 110 11 0.0 Metagenome 2084038020 *Microbiome Permanent Draft Hot Spring microbial communities from Great Boiling Spring, Nevada Hot spring microbial communities from Great Boiling Spring, Nevada - sample 1 v1 DOE Joint Genome Institute (JGI) 2084038020 Metagenome Analysis Newbler released based on JGI ITS No Yes brian.hedlund@unlv.edu Brian P. Hedlund, Brian Hedlund Yes 23555835 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot Spring 40.6614 -119.36622 6.37 7181123 14352 8 0 9 0 Unrestricted 0.0 Metagenome 3300024930 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 56_HOW8 (SPAdes) DOE Joint Genome Institute (JGI) 3300024930 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 58554578 89816 33 6 48 6 SRX2720607 Unrestricted 0.0 Metagenome 3300009117 *Microbiome Permanent Draft Freshwater sediment microbial communities River sediment microbial communities from Raisin River, Monroe, MI - enriched University of Minnesota - Twin Cities 3300009117 Metagenome Analysis IDBA released per JGI data release policy No Yes mill3731@umn.edu Hanna Temme No Environmental Aquatic River Freshwater Sediment enriched sediment 41.911425 -83.379047 68831343 98629 125 0 148 0 0.0 Metagenome 3300043142 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8CT15 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043142 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 50063930 137151 141 6 239 10 SRX8379635 Unrestricted 15.4 Metagenome 3300045137 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-602 Genome Quebec 3300045137 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 56.462556 -111.162013 1097342313 2568374 473 200 850 621 0.0 Metagenome 2003000007 *Microbiome Permanent Draft Air microbial communities from Singapore Singapore Air Sample 2 DOE Joint Genome Institute (JGI) 2003000007 Metagenome Analysis No Yes ruanyj@gis.a-star.edu.sg Yijun Ruan Yes 18382653 Environmental Air Unclassified Outdoor Air Unclassified Air 1.320982 103.91284 7 40148915 45663 31 0 60 0 0.0 Metagenome 3300041730 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_278 MetaG AgResearch, New Zealand, Mosgeil 3300041730 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1111472424 2106525 240 22 755 41 0.0 Metagenome 3300040486 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_006-O-20170717-COMP-DNA1 Battelle Memorial Institute 3300040486 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 3770711 10495 37 7 59 19 0.0 Metagenome 3300038702 *Microbiome Draft Bras del Port CELL metagenomes September 2016 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - BRAS CELL September 2016 FISABIO - Public Health 3300038702 Metagenome Analysis IDBA v. 1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline water 38.1912 -0.5947 326186392 456880 104 7 176 8 0.0 Metagenome 3300044729 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME04Sep2011-rr0956 DOE Joint Genome Institute (JGI) 3300044729 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1124246699 1719459 377 80 477 89 Unrestricted 23.52 Metagenome 3300006011 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_O2min_ad_340m_LV DOE Joint Genome Institute (JGI) 3300006011 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 584269423 1709341 731 69 1232 128 SRX2776056 Unrestricted 0.0 Metagenome 3300013537 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100542 University of Pennsylvania 3300013537 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 181110 587 6 0 8 0 SRX756212 0.0 Metagenome 3300009506 *Microbiome Permanent Draft Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_8 Novogene 3300009506 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes limeng848@gmail.com Guaymas sediment No Environmental Aquatic Intertidal zone Marine Mangrove sediment Mangrove sediment 22.498889 114.045833 4484463720 7074582 2104 29 3658 48 0.0 Metagenome 3300001164 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 DOE Joint Genome Institute (JGI) 3300001164 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 59419911 179384 185 29 361 45 SRX2021680, SRX1986250, SRX1986251 Unrestricted 0.0 Metagenome 3300046499 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere DOE Joint Genome Institute (JGI) 3300046499 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1209 -123.2691 933859217 1559172 310 74 515 95 Unrestricted 14.93 Metagenome 3300011007 *Microbiome Permanent Draft Basal ice microbial communities from Matanuska glacier, Alaska, USA - MataB Basal ice microbial communities from Matanuska glacier, Alaska, USA - MataB Tsinghua University 3300011007 Metagenome Analysis IDBA-UD released by JGI data releasing policy Yes Yes Kayani@biomed.tsinghua.edu.cn Masood Kayani No Environmental Aquatic Ice Freshwater Glacier Basal ice 61.6558 -147.5811 223379640 379765 155 4 232 4 0.0 Metagenome 3300028463 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_17JUL2017_LD1 DOE Joint Genome Institute (JGI) 3300028463 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 17565085 35694 12 30 14 39 SRX5345826 Unrestricted 68.33 Metagenome 3300002916 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm DOE Joint Genome Institute (JGI) 3300002916 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 27843720, 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.73825 -123.6301 214104574 539535 435 19 717 23 SRX2562382 Unrestricted 0.0 Metagenome 7000000085 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160158126 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000085 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 81811602 140274 0 0 0 0 0.0 Metagenome 3300013811 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01081 Weill Cornell Medical College 3300013811 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.97 8801695 13860 12 0 17 0 SRX823036 0.0 Metagenome 3300000391 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3 v3 (version 3) DOE Joint Genome Institute (JGI) 3300000391 Metagenome Analysis released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300042365 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME25Aug2015-rr0801 DOE Joint Genome Institute (JGI) 3300042365 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 496894956 763619 275 71 389 117 Unrestricted 14.96 Metagenome 3300003827 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH29Jun09 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003827 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 65060107 152777 113 41 170 70 SRX2566713 Unrestricted 0.0 Metagenome 3300048986 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1E DOE Joint Genome Institute (JGI) 3300048986 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Unclassified Roots Unclassified Root 14.75 -16.85 1248908826 1871268 25 56 62 94 Unrestricted 41.54 Metagenome 3300023194 *Microbiome Finished PPCP degradation by aerobic enrichment cultures (carbon source) Activated sludge enriched bacterial communities from WWTP in Fort Collins, Colorado, USA - ML Argonne National Laboratory 3300023194 Metagenome Analysis MegaHit v. 1.0.6 released by Karen Rossmassler Yes Yes karen.rossmassler@gmail.com Karen Rossmassler No Engineered Wastewater Unclassified Activated Sludge Unclassified activated sludge 40.585258 -105.084419 425184558 907625 510 3 824 10 0.0 Metagenome 7000000173 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 160765029 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000173 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 234202 370 0 0 0 0 SRX023061, SRX023060 0.0 Metagenome 3300030744 *Microbiome Permanent Draft Wheat crown rot disease influences the structure and diversity of wheat-associated microbiome Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 University of Western Sydney 3300030744 Metagenome Analysis MEGAHIT v. 1.0 released by JGI data releasing policy No Yes h.liu2@westernsydney.edu.au hongwei liu No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soils -27.565194 151.864444 184331235 400845 226 32 427 59 0.0 Metagenome 3300042559 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Jun2018-rr0647 DOE Joint Genome Institute (JGI) 3300042559 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 811262139 1297321 308 82 432 112 Unrestricted 20.8 Metagenome 3300005568 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_12_30cm DOE Joint Genome Institute (JGI) 3300005568 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2204871079 6502533 2408 43 4140 100 SRX2728260 Unrestricted 0.0 Metagenome 3300020043 *Microbiome Permanent Draft Freshwater viral communities from Chicago Sanitary Ship Canal, USA Freshwater viral communities from Illinois river at Havana, Illinois, USA - 1 University of Illinois-Urbana Champaign 3300020043 Metagenome Analysis SPADES v3.10.1 released by JGI data releasing policy No Yes wtliu@illinois.edu Wen-Tso Liu No Environmental Aquatic River Freshwater Unclassified Freshwater 40.32163 -90.055601 361153959 785864 0 0 1 0 0.0 Metagenome 3300000509 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O2 DOE Joint Genome Institute (JGI) 3300000509 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 912826 3047 47 34 76 71 SRX1985648, SRX1985647 0.0 Metagenome 3300045686 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_2_B DOE Joint Genome Institute (JGI) 3300045686 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 145823483 166487 93 1 102 2 Unrestricted 161.99 Metagenome 3300044235 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Seawater viral communities from North Atlantic Ocean - Oct19 T100 S DOE Joint Genome Institute (JGI) 3300044235 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.7929 -64.3799 229112212 585131 14 0 22 0 Unrestricted 48.9 Metagenome 3300029809 *Microbiome Permanent Draft Dolichoderus ant bacterial communities Ant gut bacterial community from Dolichoderus sp. 3-PL2018, Madre de Dios, Puerto Maldonado, Peru - colony JSC188 Harvard University 3300029809 Metagenome Analysis IDBA-UD v. 1.0 released by JGI data releasing policy Yes Yes jar337@drexel.edu Jacob Russell No Host-associated Arthropoda: Insects Gut Digestive system Unclassified ant gut -12.5 -70.1 7509123 10303 6 1 2 2 SRX3936341 0.0 Metagenome 3300009445 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331 DOE Joint Genome Institute (JGI) 3300009445 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 683666899 1294879 554 72 890 109 SRX2999544 Unrestricted 0.0 Metagenome 3300049489 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Arizona, USA - sycamorecreek_2019_sed_WHONDRS-S19S_0028 DOE Joint Genome Institute (JGI) 3300049489 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 33.750675 -111.507871 697600531 1453931 666 34 1201 70 Unrestricted 10.47 Metagenome 3300042318 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Apr2002-rr0635 DOE Joint Genome Institute (JGI) 3300042318 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 600550631 971691 196 37 259 39 Unrestricted 28.68 Metagenome 3300037199 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 S3 10-14 DOE Joint Genome Institute (JGI) 3300037199 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0475 835948486 1405190 244 9 387 13 SRX8144860 Unrestricted 11.23 Metagenome 3300026702 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN593 (SPAdes) DOE Joint Genome Institute (JGI) 3300026702 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.070856 -96.582821 15479259 50976 66 1 107 4 SRX1986976 Unrestricted 0.0 Metagenome 3300017970 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG DOE Joint Genome Institute (JGI) 3300017970 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 4.0627 -73.195 2142865516 4358752 1409 88 2377 164 SRX3936925 Unrestricted 7.12 Metagenome 3300041038 *Microbiome Permanent Draft Hydraulic fracturing wastewater impacted soil microbiome project Soil microbial communities from Fox Creek, Alberta, Canada - FC027 University of British Columbia 3300041038 Metagenome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy Yes Yes alessi@ualberta.ca Daniel S. Alessi No Environmental Terrestrial Unclassified Soil Unclassified Soil 54.401 -116.8043 3220802 5003 19 2 35 3 0.0 Metagenome 3300028268 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25.v5 DOE Joint Genome Institute (JGI) 3300028268 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3529 19.0475 184394515 360903 127 17 189 32 SRX8128116, SRX8128115 Unrestricted 0.0 Metagenome 3300070863 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_006-M-20180723-COMP-DNA1 3300070863 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 17797094 55782 68 4 106 6 0.0 Metagenome 3300014804 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS66_12 University of Hohenheim 3300014804 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 143005092 230952 107 0 149 1 0.0 Metagenome 3300005682 *Microbiome Permanent Draft Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia Enhanced biological phosphorus removal bioreactor viral communities from the University of Queensland, Australia - SBR4-V91801 Phage Sequencing University of Queensland 3300005682 Metagenome Analysis CLC 6.0 Released per Connor Skennerton (Sep 15, 2015) No Yes c.skennerton@gmail.com Connor Skennerton No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor lab-scale EBPR bioreactor -27.49999 153.012098 4631867 9913 5 0 14 0 0.0 Metagenome 3300000160 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 135m DOE Joint Genome Institute (JGI) 3300000160 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 135598311 269704 98 3 202 5 Unrestricted 0.0 Metagenome 3300043508 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada - Lake 09-378 Genome Quebec 3300043508 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 54.622591 -113.123462 1210830066 2894610 572 92 934 187 0.0 Metagenome 3300052669 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Photosynthetic mat viral communities from Mushroom Spring, YNP, Wyoming, United States - MS20060912 MSe3B DOE Joint Genome Institute (JGI) 3300052669 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 23997813 38383 15 0 23 0 Unrestricted 0.0 Metagenome 7000000354 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764447348 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000354 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 50114858 95594 0 0 0 0 0.0 Metagenome 7000000721 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763577454 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000721 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 109870043 210877 0 0 0 0 0.0 Metagenome 3300028215 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS374 with 0.8UM filter - spades JGI facility at Oak Ridge National Laboratory 3300028215 Metagenome Analysis Spades v. 3.11.1 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 20995738 38417 13 5 16 7 0.0 Metagenome 3300007979 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765094712 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007979 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 113498527 144798 90 0 95 0 0.0 Metagenome 3300040734 *Microbiome Permanent Draft Metagenomes of anaerobic enrichment cultures that dechlorinate hexachlorocyclohexane isomers Lab-enriched soil microbial communities from a contaminated agricultural site, Guadeloupe, France - BetaHCH MSP Beijing Genomics Institute (BGI) 3300040734 Metagenome Analysis spades v. 3.12.0 Yes Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Environmental Terrestrial Unclassified Soil Contaminated soil 16.249 -61.565 573335923 1356141 164 1 388 0 0.0 Metagenome 3300029172 *Microbiome Permanent Draft Synthetic microbial community for library methods comparison from University of Liverpool, United Kingdom Synthetic microbial communities for library methods comparison from University of Liverpool, United Kingdom - Mg21 University of Liverpool 3300029172 Metagenome Analysis released Yes Yes No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 53.405936 -2.9677609 24110294 52627 40 0 61 0 ERX1325897 0.0 Metagenome 3300011504 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00390 Weill Cornell Medical College 3300011504 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.97 20323300 29411 20 1 27 5 SRX822361 0.0 Metagenome 3300012899 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2 DOE Joint Genome Institute (JGI) 3300012899 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Soil Agricultural land soil 43.3 -89.38 612691937 1571449 659 30 1316 62 SRX3298486 Unrestricted 3.86 Metagenome 3300055015 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_150805.NP1 DOE Joint Genome Institute (JGI) 3300055015 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 1173726694 2464672 670 87 1015 134 Restricted 0.0 Metagenome 3300042912 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-341 Genome Quebec 3300042912 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.829004 -119.839318 1286331466 2876662 430 119 860 214 0.0 Metagenome 3300049502 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MC2 DOE Joint Genome Institute (JGI) 3300049502 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 9475720 24222 51 1 113 2 Unrestricted 27.14 Metagenome 3300070226 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_038-M-20160810-COMP-DNA1 3300070226 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 2628793 9635 19 4 30 6 0.0 Metagenome 3300002890 *Microbiome Permanent Draft Contaminated subsurface sediment microbial communities from Dusseldorf, Germany, analyzing toluene degradation Contaminated subsurface sediment microbial communities from Dusseldorf, Germany - analyzing toluene degradation 3300002890 Metagenome Analysis released by JGI data releasing policy No Yes emnabouhajja@gmail.com Emna Bouhajja No Environmental Terrestrial Sediment Geologic Unclassified Contaminated subsurface sediment 51.21 6.46 9502 16 0 0 0 0 0.0 Metagenome 3300047163 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Southern Region, Iceland - Sphagnum warnstorfii 11_WAR_ICE DOE Joint Genome Institute (JGI) 3300047163 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.1122 -20.5608 1326072288 2469882 686 144 1103 228 SRX14786707 Unrestricted 7.66 Metagenome 3300022852 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0909-MG DOE Joint Genome Institute (JGI) 3300022852 Metagenome Analysis spades v. 3.11.1 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 201621591 347297 164 0 205 1 SRX4369926 Unrestricted 33.23 Metagenome 3300009630 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_10_40 DOE Joint Genome Institute (JGI) 3300009630 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 306302471 516347 134 1 246 5 SRX3003283 Unrestricted 0.0 Metagenome 3300025429 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE17Sep08 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025429 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 137588090 333278 74 56 123 209 SRX2565223 Unrestricted 0.0 Metagenome 3300070906 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_080-O-20180918-COMP-DNA1 3300070906 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 75931583 222991 114 8 215 16 0.0 Metagenome 3300048614 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT_PTT1_AUG19_180cm DOE Joint Genome Institute (JGI) 3300048614 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9883 -108.4003 337630919 758675 467 6 846 13 Restricted 13.05 Metagenome 3300023178 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (version 2) DOE Joint Genome Institute (JGI) 3300023178 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1519831351 3019560 562 106 856 159 SRX4071712 Unrestricted 20.22 Metagenome 3300000482 *Microbiome Permanent Draft Anaerobic digester microbial communities from Soeholt, Denmark Anaerobic digester microbial communities from Northern Denmark, sample from Lynggard manure Aalborg University 3300000482 Metagenome Analysis released per JGI data release policy No Yes starnas88@gmail.com Piotr Starnawski No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic digester 56.446744 9.372697 82793154 102378 35 0 66 0 0.0 Metagenome 3300050009 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 E3 20-24 DOE Joint Genome Institute (JGI) 3300050009 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3534 19.0467 601852835 938486 238 5 399 6 Restricted 14.09 Metagenome 3300025854 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost305-11B (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025854 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.299 -156.61 503279323 1334568 566 36 997 49 SRX2901419 Unrestricted 0.0 Metagenome 3300035147 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0817U02 DOE Joint Genome Institute (JGI) 3300035147 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.039 607624548 1420618 494 10 788 13 SRX8271018 Unrestricted 6.61 Metagenome 3300027717 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027717 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 484338926 1288745 577 35 1090 73 SRX2574178 Unrestricted 0.0 Metagenome 3300031740 *Microbiome Permanent Draft Hardwood forest soil microbial communities from various locations in the United States Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05 DOE Joint Genome Institute (JGI) 3300031740 Metagenome Analysis spades v. 3.12.0 Yes Yes jdraff@indiana.edu Jonathan Raff No Environmental Terrestrial Temperate forest Soil Bulk soil hardwood forest soil 39.0844 -86.4705 4927224504 12801010 2029 37 3851 74 SRX5360348 Unrestricted 6.85 Metagenome 3300044922 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater bacterial communities from Lake Mendota, Wisconsin, United States - ME_2020-10-19_5m_Bacteria_A DOE Joint Genome Institute (JGI) 3300044922 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 638130923 1003698 274 80 352 132 Unrestricted 20.92 Metagenome 3300012655 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100411 University of Pennsylvania 3300012655 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 31679690 71613 28 2 39 6 SRX756733 0.0 Metagenome 3300056751 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - APS1_1W_T0 DOE Joint Genome Institute (JGI) 3300056751 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 1886327519 2573380 667 102 822 143 Unrestricted 26.36 Metagenome 3300027385 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A5-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300027385 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 28214469 93278 99 5 198 2 SRX1990517 Unrestricted 0.0 Metagenome 3300069365 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_013-M-20160728-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069365 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 19858918 70818 73 8 133 12 0.0 Metagenome 3300003146 *Microbiome Permanent Draft Human fecal microbial communities from Washington University at St. Louis, Missouri, USA, of twins Human fecal microbial communities from Washington University at St. Louis, Missouri, USA, of twins - TS28 Washington University in St. Louis 3300003146 Metagenome Analysis Made public because these are downloaded from Genbank No Yes jgordon@wustl.edu Human Gut Community Users Yes 20363958 Host-associated Mammals: Human Large intestine Digestive system Fecal Huma fecal 38.63549 -90.264891 89417576 107542 7 0 16 0 0.0 Metagenome 3300037237 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 711 P-3-D DOE Joint Genome Institute (JGI) 3300037237 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3534 19.0473 1353552823 2462515 438 19 749 29 SRX8146251 Unrestricted 10.63 Metagenome 3300045610 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - WIN9-9-19-19 DOE Joint Genome Institute (JGI) 3300045610 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.4219 -120.6219 718378100 1712618 513 48 897 94 Restricted 6.94 Metagenome 3300018088 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG DOE Joint Genome Institute (JGI) 3300018088 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 4.0627 -73.195 2877608122 5958641 1843 3 3151 6 SRX3936787 Unrestricted 6.76 Metagenome 3300069559 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - NIWO_002-O-20160830-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069559 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.05425 -105.58237 30438922 107918 88 14 174 27 0.0 Metagenome 3300050155 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D10_SEK2_2_to_SEK2 DOE Joint Genome Institute (JGI) 3300050155 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.245 676495986 1197281 392 127 670 200 Unrestricted 15.5 Metagenome 3300009934 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R13 University of New South Wales 3300009934 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 103529693 173996 59 1 106 2 0.0 Metagenome 3300012047 *Microbiome Permanent Draft Norwegian Young Sea Ice 2015 - N-ICE15 Seawater microbial communities from Norwegian Young Sea Ice, Arctic Ocean, Norway, 2015 - N-ICE15, floe 4, site 3, 5m LGC Genomics 3300012047 Metagenome Analysis Ray v 2.3.1 released by JGI data releasing policy No Yes antonioggsousa@gmail.com; cmagalhaes@ciimar.up.pt Antonio Sousa; Catarina Magalh?es No Environmental Aquatic Epipelagic Marine Unclassified marine 80.500215 7.866786 329496 1743 2 0 11 0 0.0 Metagenome 3300011123 *Microbiome Permanent Draft Environmental DNA from seawater and marine sediment Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_3, total Toyama Prefectural University 3300011123 Metagenome Analysis CLC released by JGI data releasing policy No Yes t-yurika@pu-toyama.ac.jp Yurika Takahashi No Environmental Aquatic Coastal Marine Unclassified marine 37.1316 137.71844 49525524 122302 25 4 48 6 0.0 Metagenome 3300001307 *Microbiome Permanent Draft Oil-contaminated sediment microbial communities from Dauphin Island, Alabama, USA Oil-contaminated sediment microbial communities from Dauphin Island, Alabama, USA - ALABAMA_S1_L001_R1_001 University of Tennessee 3300001307 Metagenome Analysis Velvet released per JGI data release policy No Yes nyflournoy@crimson.ua.edu Nikaela Flournoy, Nikaela Flournoy No Environmental Terrestrial Oil-contaminated sediment Geologic Unclassified Oil-contaminated sediment 30.2553 -88.1097 80699 394 0 0 0 0 0.0 Metagenome 3300048910 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 DOE Joint Genome Institute (JGI) 3300048910 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Rhizoplane Roots Unclassified Rhizoplane soil 42.40581 -85.40228 1498184590 2498162 542 47 878 65 Unrestricted 13.51 Metagenome 3300013213 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100224 University of Pennsylvania 3300013213 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 40464102 76875 34 1 36 1 SRX756677 0.0 Metagenome 3300069318 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Southeast, FL, USA - DSNY_003-M-20170829-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069318 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 28.12504 -81.4362 46557536 139099 87 8 172 8 0.0 Metagenome 3300017674 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - LG13-11 University of Michigan 3300017674 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu; sjackrel@ucsd.edu Vincent Denef; Sara Jackrel No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.76324 -84.405 28759624 45321 7 1 15 1 0.0 Metagenome 3300006327 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0125m University of Hawaii 3300006327 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Photic zone Marine 22.75 -158.0 339241546 816403 708 51 1040 73 0.0 Metagenome 3300039138 *Microbiome Permanent Draft Sediment and seawater microbial communities from hydrothermal vent in Taiwan, China Seawater microbial communities from hydrothermal vent in Taiwan, China - Y2 Xiamen university 3300039138 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Coastal Marine Unclassified Seawater 24.83499 121.96207 61979914 107216 60 0 87 0 0.0 Metagenome 3300002980 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - MSL at JPL (megahit assembly) DOE Joint Genome Institute (JGI) 3300002980 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes nnivanova@lbl.gov, NNIvanova@lbl.gov Natasha Ivanova, Natalia Ivanova No Engineered Built environment Unclassified Spacecraft Assembly Cleanrooms Unclassified Clean room 34.1 -118.1 302737 698 10 0 0 0 Unrestricted 0.0 Metagenome 3300038735 *Microbiome Permanent Draft Seagrass microbial communities from Seahorse Key, Florida, USA Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 University of Florida 3300038735 Metagenome Analysis Megahit v. 1.1.4 released by JGI data releasing policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Plants Unclassified Rhizome Unclassified seagrass rhizome 29.23 -83.735 71691238 83226 16 0 19 1 0.0 Metagenome 2067725001 *Microbiome Permanent Draft Soil microbial communities from Great Prairies (Kansas, Wisconsin and Iowa) Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil v1 DOE Joint Genome Institute (JGI) 2067725001 Metagenome Analysis Velvet released based on JGI ITS No Yes janet.jansson@pnnl.gov Janet Jansson Yes 30158906 Environmental Terrestrial Unclassified Soil Grasslands Soil 43.312222 -89.370833 7.8 159807537 443744 71 0 128 0 Unrestricted 0.0 Metagenome 3300030409 *Microbiome Permanent Draft Environmental microbial communities from various locations to study antibiotic resistance - The University of Hong Kong Freshwater sediment microbial communities from University of Hong Kong - Freshwater Fishpond Sediment University of Hong Kong 3300030409 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Sediment Freshwater Unclassified Freshwater Fishpond Sediment 21251176 59378 74 1 120 2 SRX371696 0.0 Metagenome 3300032008 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18 DOE Joint Genome Institute (JGI) 3300032008 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 1761625510 4189678 719 99 1178 160 SRX5820246 Unrestricted 12.22 Metagenome 3300052801 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_TH_037D DOE Joint Genome Institute (JGI) 3300052801 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0695 10.43185 407396204 1119419 382 29 753 43 Unrestricted 8.12 Metagenome 3300012989 *Microbiome Permanent Draft Amended soil microbial communities from New York, USA to study carbon cycling Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG DOE Joint Genome Institute (JGI) 3300012989 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes twhitman@wisc.edu Thea Whitman No Environmental Terrestrial Agricultural land Soil Unclassified soil 42.4531 -76.3842 3135278703 7189741 2651 122 4576 257 SRX3568533 Unrestricted 5.37 Metagenome 3300035415 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Eunicella gazella from Algarve, Portugal - EG16H Euk Molecular Research LP (MR DNA) 3300035415 Metagenome Analysis Metawrap workflow v. 1.0.5 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 36712249 37742 0 2 0 2 0.0 Metagenome 3300045299 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_5_E DOE Joint Genome Institute (JGI) 3300045299 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 187534714 219052 100 1 110 1 Unrestricted 94.33 Metagenome 3300027557 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius sp. 2 HERON ISLAND (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027557 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 690151877 723203 16 4 22 4 SRX2711969 Unrestricted 0.0 Metagenome 2124908026 *Microbiome Permanent Draft Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan State University, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v1 DOE Joint Genome Institute (JGI) 2124908026 Metagenome Analysis released based on JGI ITS No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Miscanthus rhizosphere 42.406189 -85.40016 7962338 15700 25 7 53 0 Unrestricted 0.0 Metagenome 3300034692 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A1A0.3 DOE Joint Genome Institute (JGI) 3300034692 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 417283220 1302041 878 31 1650 44 SRX7658969 Unrestricted 5.77 Metagenome 3300046369 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_180502.NP2 DOE Joint Genome Institute (JGI) 3300046369 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 653628793 1371690 357 47 560 90 Unrestricted 18.06 Metagenome 3300005661 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Agave microbial communities from Guanajuato, Mexico - As.Sf.e DOE Joint Genome Institute (JGI) 3300005661 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes avisel@lbl.gov, laila.partida@cinvestav.mx Axel Visel, Laila P. Partida-Martinez No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Agave 21.7658 -100.163 2727524792 8441842 1431 1173 2686 2010 SRX2124702 Unrestricted 0.0 Metagenome 3300024268 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet fungal communities from Santa Barbara, California, USA - pellet 2 Spades (v3) (version 3) DOE Joint Genome Institute (JGI) 3300024268 Metagenome Analysis spades v. 3.11.1-check No Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4204 -119.6671 4651081251 8723227 4847 25 6360 33 SRX3963494 Unrestricted 0.0 Metagenome 3300039830 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_013-O-20170801-COMP-DNA1 Battelle Memorial Institute 3300039830 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 29030675 78671 87 12 120 23 0.0 Metagenome 3300028393 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_MF_MetaG (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028393 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh Yes 29921005 Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 46.8319 -72.5 607195447 1204240 271 51 411 76 SRX2524537 Unrestricted 0.0 Metagenome 3300017708 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG DOE Joint Genome Institute (JGI) 3300017708 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine -20.099 -70.892 217840534 499210 9 1 11 1 SRX7206579 Unrestricted 17.27 Metagenome 3300008961 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1550B-02 DOE Joint Genome Institute (JGI) 3300008961 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2328 -123.878 401338205 752739 469 28 698 53 SRX2753726 Unrestricted 6.55 Metagenome 3300022673 *Microbiome Permanent Draft Carpinteria Salt Marsh Metagenomes 2014 to 2017 Soil microbial communities from marsh rhizosphere in Carpinteria, CA, United States - Rhizo LS University of California, Irvine 3300022673 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Terrestrial Wetlands Soil Unclassified Soil 34.401 -119.534 207323591 224820 55 0 70 0 0.0 Metagenome 3300022338 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Lake Baghdad, Rottnest Island (WA - Australia) - LBBM2 JM47 AGRF 3300022338 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.994794 115.523776 30324386 59737 28 4 54 2 0.0 Metagenome 3300038370 *Microbiome Permanent Draft Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA Freshwater microbial communities from the Upper Mississippi River, Minnesota, USA - pen2 University of Minnesota 3300038370 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic River Freshwater Unclassified Freshwater 44.917867 -93.128967 3450726 6101 8 0 5 0 0.0 Metagenome 3300011977 *Microbiome Permanent Draft Ruminant gut microbial communities from various locations in USA Sheep rumen microbial communities from Wyoming, USA - O_aries_Con_1111 University of Missouri 3300011977 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen 41.314168 -105.584589 192833035 273391 123 5 226 6 SRX331741 0.0 Metagenome 3300033983 *Microbiome Permanent Draft Lab enriched peat soil microbial communities from two peatlands near Ithaca, NY, United States Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fraction DOE Joint Genome Institute (JGI) 3300033983 Metagenome Analysis spades v. 3.13.0 Yes Yes rer26@cornell.edu Ruth Richardson No Environmental Terrestrial Wetlands Soil Peat peat soil 42.5488 -76.2662 1216244566 2331754 457 5 721 11 SRX7543031 Unrestricted 12.48 Metagenome 3300000250 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2009 P26 1000m DOE Joint Genome Institute (JGI) 3300000250 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Aphotic zone Marine 50.0 -145.0 138253367 342771 159 24 297 33 Unrestricted 0.0 Metagenome 3300042200 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D0_1 DOE Joint Genome Institute (JGI) 3300042200 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 555320218 838250 288 0 387 0 Unrestricted 24.21 Metagenome 3300020292 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000965 (ERX555930-ERR599113) CEA Genoscope 3300020292 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -12.9226 -96.0932 158679802 409424 171 8 281 17 0.0 Metagenome 3300029755 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 050_3_14_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029755 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 175791437 213694 192 0 234 0 0.0 Metagenome 3300045051 *Microbiome Permanent Draft Rhizosphere and rhizoplane microbial communities from rice plants in Newark, Delaware, United States Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED DOE Joint Genome Institute (JGI) 3300045051 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes angelias@udel.edu Angelia Seyfferth No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 39.66844 -75.7447 3102141545 4896080 1317 38 2066 72 Unrestricted 15.08 Metagenome 3300025117 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection B1 (SPAdes) DOE Joint Genome Institute (JGI) 3300025117 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.534762 -107.782602 439981598 774321 540 16 805 27 SRX1990956 Unrestricted 0.0 Metagenome 3300014716 *Microbiome Permanent Draft Maize phyllosphere microbial communities from Texas and California to study drought stress Maize phyllosphere microbial communities from California to study drought stress - PHYLLO11_watered_CA_Berkeley J. Craig Venter Institute 3300014716 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Maize phyllosphere 37.53128 -122.7598 2392627 4356 2 2 4 5 SRX1437843 0.0 Metagenome 3300046387 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_170906.NP2 DOE Joint Genome Institute (JGI) 3300046387 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 884130206 1895700 452 58 740 71 Unrestricted 12.77 Metagenome 3300010259 *Microbiome Permanent Draft Animal gut microbial communities from fecal samples from Wisconsin, USA Eastern black-and-white colobus group fecal microbial communities from Wisconsin, USA - Cm1022B metagenome DOE Joint Genome Institute (JGI) 3300010259 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes apneumann2@wisc.edu Anthony Neumann No Host-associated Mammals Large intestine Digestive system Fecal Eastern black-and-white colobus group fecal 43.78 -88.79 118426464 192554 386 0 617 0 SRX2506180 Unrestricted 0.0 Metagenome 3300044614 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME11Jul2018-rr0974 DOE Joint Genome Institute (JGI) 3300044614 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1203568714 1795969 474 95 660 137 Unrestricted 16.73 Metagenome 3300000461 *Microbiome Permanent Draft Honey bee gut microbial communities from West Haven, Conneticut, USA Honey bee gut microbial communities from West Haven, Conneticut, USA - Gilliamella SCG AB-598-P17 Broad Institute 3300000461 Metagenome Analysis released per JGI data release policy No Yes philipp.engel@yale.edu Philipp Engel No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Honey bee gut 32.2743 -110.9388 1949482 3413 10 0 93 1 0.0 Metagenome 3300042495 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lake Yojoa, Honduras - Yojoa_01_2020_B_epi (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300042495 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Lake Freshwater Unclassified Freshwater 14.8084 -87.9952 71665175 172086 79 42 111 58 Unrestricted 117.63 Metagenome 3300032219 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada - Lake 06-156 Genome Quebec 3300032219 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.225314 -76.83351 577915274 1268827 269 48 448 99 0.0 Metagenome 3300032884 *Microbiome Permanent Draft Lake microbial communities from Canada Sediment microbial communities from the Mixedwood Plains Ecozone, Canada - top sediment 08-148 Genome Quebec 3300032884 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Sediment 44.49841 -76.408316 415806597 966222 353 27 723 66 0.0 Metagenome 3300022739 *Microbiome Permanent Draft Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - brown nodules DOE Joint Genome Institute (JGI) 3300022739 Metagenome Analysis spades v. 3.11.1-check Yes Yes ahirsch@ucla.edu Ann M. Hirsch No Host-associated Plants Nodule Roots Unclassified root nodules 34.0136 -118.4673 428274294 370376 13 9 17 17 SRX4498681 Unrestricted 58.28 Metagenome 3300008133 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763840445 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008133 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 154875861 206153 141 0 150 0 0.0 Metagenome 3300025506 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2015DPH_11_40 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025506 Metagenome Analysis spades v. 3.11.1 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 280313594 534133 122 0 180 1 SRX3003288 Unrestricted 0.0 Metagenome 3300014088 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_046 The George Washington University (GWU) 3300014088 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 14425051 32458 30 5 55 4 SRX656277 0.0 Metagenome 3300013395 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100151 University of Pennsylvania 3300013395 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 1478365 3804 5 0 10 2 SRX756381 0.0 Metagenome 3300040111 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Lahti, Finland - 048_R1_022417 University of Maryland 3300040111 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.99339722 25.707175 11434136 17355 7 1 17 4 0.0 Metagenome 3300020057 *Microbiome Permanent Draft Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP5.IB-2 DOE Joint Genome Institute (JGI) 3300020057 Metagenome Analysis spades v. 3.10.1 Yes Yes dysumner@ucdavis.edu Dawn Sumner No Environmental Aquatic Lake Freshwater Microbial mats freshwater microbial mat -77.5281 161.59 1310318975 2265988 702 41 1043 79 SRX3539179 Unrestricted 21.33 Metagenome 3300033893 *Microbiome Permanent Draft Hot spring microbial communities from different geyser basins in Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Norris-Mammoth Corridor, Yellowstone National Park, WY, United States - NMC.RSW_S DOE Joint Genome Institute (JGI) 3300033893 Metagenome Analysis spades v. 3.13.0 Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Near-boiling (>90C) Thermal springs Sediment hot spring sediment 44.7535 -110.7249 135070162 226017 175 2 260 3 SRX7584895 Unrestricted 874.08 Metagenome 3300007300 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160603188 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007300 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 140165399 195112 103 0 149 0 0.0 Metagenome 3300046715 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 soil DOE Joint Genome Institute (JGI) 3300046715 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.587539 -123.193689 6.18 410712605 646316 186 41 317 70 Unrestricted 19.46 Metagenome 3300026079 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_Bottom_ad_4513_LV_A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026079 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 326711349 652482 248 16 381 29 SRX2775742 Unrestricted 0.0 Metagenome 3300021434 *Microbiome Permanent Draft Filtered air microbial and viral communities from Madrid, Spain Filtered air microbial and viral communities from Madrid, Spain - sample ALO6 Autonomous University of Barcelona 3300021434 Metagenome Analysis SPAdes 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Air Unclassified Outdoor Air Unclassified filtered air 40.4 -3.7 3217306 6095 5 1 3 4 0.0 Metagenome 3300048922 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 DOE Joint Genome Institute (JGI) 3300048922 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Unclassified Roots Unclassified Root 42.40581 -85.40228 873367982 1281856 289 43 400 65 Unrestricted 31.32 Metagenome 3300042624 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Zootermopsis nevadensis from Mount Pinos, Los Padres National Forest, California, USA - Zx50 Eurofins MWG Operon 3300042624 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 34.81496 -119.1391507 453479972 612664 229 29 280 28 0.0 Metagenome 3300044910 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater bacterial communities from Lake Mendota, Wisconsin, United States - ME_2020-10-19_23.5m_Bacteria_A DOE Joint Genome Institute (JGI) 3300044910 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 753465622 1179223 366 90 482 127 Unrestricted 19.33 Metagenome 3300046768 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Atchafalaya River, Louisiana, USA - NASQAN2011_217 DOE Joint Genome Institute (JGI) 3300046768 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 29.6979 -91.3728 26167565 82362 91 13 171 21 Unrestricted 0.0 Metagenome 3300002198 *Microbiome Permanent Draft Freshwater microbial community from Sao Paulo Zoo Lake, Brazil Freshwater microbial communities from San Paulo Zoo lake, Brazil - JUL 2013 3300002198 Metagenome Analysis SoapDeNovo released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Lake -23.651072 -46.620675 100603208 302267 5 1 37 4 0.0 Metagenome 3300011856 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00706 Weill Cornell Medical College 3300011856 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.86 -73.91 40197170 69856 35 1 54 0 SRX822673 0.0 Metagenome 3300029515 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI012177-93 Beijing Genomics Institute (BGI) 3300029515 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 153056585 210223 141 0 193 0 0.0 Metagenome 7000000683 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 686765762 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000683 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 9021025 17440 0 0 0 0 0.0 Metagenome 3300050265 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_19 DOE Joint Genome Institute (JGI) 3300050265 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.875 160.739 545644200 895449 116 44 154 76 SRX18235901 Restricted 24.11 Metagenome 3300025445 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025445 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 135452395 394637 110 6 207 16 SRX2851470 Unrestricted 0.0 Metagenome 3300005809 *Microbiome Permanent Draft Deep-sea mud volcano sediment microbial communities from Gulf of Cadiz, Spain - an anaerobic methane oxidizing consortium CY-M12 Deep-sea mud volcano sediment microbial communities from Gulf of Cadiz, Spain - an anaerobic methane oxidizing consortium CY-M12 Beijing Genomics Institute (BGI), Macrogen 3300005809 Metagenome Analysis Spades No Yes knobe@live.cn Ying Chen No Environmental Aquatic Unclassified Sediment Unclassified sediment 35.651944 -7.336667 4068357 4318 1 0 1 0 0.0 Metagenome 3300035374 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_2c_13 mgh University of Alberta 3300035374 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified wastewater 56.7292 -111.3885 43518142 55691 19 0 28 0 0.0 Metagenome 3300013576 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100315 University of Pennsylvania 3300013576 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3964832 5727 4 4 6 6 SRX756342 0.0 Metagenome 3300000868 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 E1 DOE Joint Genome Institute (JGI) 3300000868 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 43475256 67322 52 0 54 0 SRX3311489 Unrestricted 0.0 Metagenome 3300040422 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Blandy Experimental Farm, Mid-Atlantic, VA, USA - BLAN_031-M-20170714-COMP-DNA1 Battelle Memorial Institute 3300040422 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Farm Terrestrial soil 39.06026 -78.07164 4676322 13705 44 1 76 1 0.0 Metagenome 3300034735 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Eunicella verrucosa from Algarve, Portugal - EV04H Molecular Research LP (MR DNA) 3300034735 Metagenome Analysis Metawrap workflow v. 1.0.7 released by JGI data releasing policy No Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 33355927 37517 7 0 10 7 0.0 Metagenome 3300021550 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Stylissa sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina ""control"", st9ic 200bp no Eukaryotes last" University of New South Wales 3300021550 Metagenome Analysis IDBA-UD released by Emmanuelle BOTTE Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Stylissa sp. (marine sponge) -9.828217 150.820517 72500047 143755 34 3 67 6 0.0 Metagenome 3300001592 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes in water sample from Medicine Hat oil field -PW_MHGC_2012April2: McGill University 3300001592 Metagenome Analysis released per user request No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 50.033333 -110.666667 7.2 1015936974 2251644 954 5 1737 7 0.0 Metagenome 3300022905 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011509CT metaG (version 2) DOE Joint Genome Institute (JGI) 3300022905 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 751960369 1293771 437 35 763 85 SRX4068624 Unrestricted 42.63 Metagenome 3300040303 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 094_R1_022417 University of Maryland 3300040303 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.71711111 27.1175 5964770 16741 34 1 66 1 0.0 Metagenome 3300002353 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 15JUN2010 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002353 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 22487738 49441 61 14 106 34 SRX1988904 Unrestricted 0.0 Metagenome 3300038692 *Microbiome Permanent Draft Lake microbial communities from Canada Sediment microbial communities from the Atlantic Highlands Ecozone, Canada - bottom sediment 17-067 metaSPAdes Genome Quebec 3300038692 Metagenome Analysis SPAdes v. 3.11.1 metaSPAdes mode released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Sediment 48.131057 -68.666779 1202291222 3203443 671 3 1489 4 0.0 Metagenome 3300036930 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 S2 20-24 DOE Joint Genome Institute (JGI) 3300036930 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0471 648562118 1002784 190 9 288 15 SRX8138219 Unrestricted 19.02 Metagenome 3300014556 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS68_12 University of Hohenheim 3300014556 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 105613793 167301 72 0 105 0 0.0 Metagenome 3300045176 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_3_C DOE Joint Genome Institute (JGI) 3300045176 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 175773841 214251 100 1 125 1 Unrestricted 89.68 Metagenome 3300022225 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_400_PacBio MetaG (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300022225 Metagenome Analysis spades v. 3.11.1-check Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Seawater 20.3333 -107.0 1324783114 2570607 755 3 1501 8 SRX7238457 Unrestricted 41.05 Metagenome 3300050218 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Warrenville, Illinois, USA - 49_697_IL_DR_0cm_c1_T1_16O DOE Joint Genome Institute (JGI) 3300050218 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 41.84145 -88.2298 965855276 1695361 382 8 619 7 Restricted 14.2 Metagenome 3300029568 *Microbiome Permanent Draft Cephalochordate Microbial Metagenomes Florida lancelet gut microbial communities from Tampa Bay, Florida, USA - NH004 University of California, San Diego, Scripps Institute of Oceanography 3300029568 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton No Host-associated Cephalochordata Intestine Digestive system Fecal lancelet gut 27.847583 -82.552861 45075105 48404 20 4 18 3 0.0 Metagenome 3300040244 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest, Northeast, MA, USA - HARV_016-O-1-1-20130709-GEN-DNA1 Argonne National Laboratory 3300040244 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 42.5369 -72.17266 7203891 21402 18 6 41 7 ERX2133994 0.0 Metagenome 3300000815 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Contaminated groundwater microbial communities from Rifle, Colorado, USA - Rifle Groundwater A1 DOE Joint Genome Institute (JGI) 3300000815 Metagenome Analysis No Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 26083755 Environmental Aquatic Groundwater Deep subsurface Contaminated Contaminated groundwater 39.53 -107.78 100329698 108541 0 0 0 0 SRX1668018, SRX764703 Unrestricted 0.0 Metagenome 3300070282 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dead Lake, Alabama, USA - DELA_002-M-20160825-COMP-DNA1 3300070282 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 26485731 79924 76 4 123 5 0.0 Metagenome 3300002174 *Microbiome Permanent Draft Biogas fermentation microbial communities from biogas plants in Germany Biogas fermentation microbial communities from Germany - Plant 2 DNA2 DOE Joint Genome Institute (JGI) 3300002174 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes asczyrba@techfak.uni-bielefeld.de Alexander Sczyrba No Engineered Bioreactor Digestate Anaerobic Unclassified Biogas fermentantion 52.0385 8.4956 7.8 581429295 1090388 1012 25 1600 41 SRX1597947 Unrestricted 0.0 Metagenome 3300014780 *Microbiome Permanent Draft Human fecal microbial commmunities from Fecal Microbiota Transplantation (FMT) for ulcerative colitis - University of Washington Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01D049B1 University of Washington 3300014780 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26288277 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 112481876 189522 84 0 157 0 SRX1131728 0.0 Metagenome 3300027911 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027911 Metagenome Analysis spades v. 3.11.1 Yes Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment watersheds 41.170727 -78.4726 3312405479 7983117 1530 139 2881 265 SRX2839559 Unrestricted 0.0 Metagenome 3300005172 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_02_40cm DOE Joint Genome Institute (JGI) 3300005172 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2132531779 5743138 1751 30 3041 54 SRX2521036 Unrestricted 0.0 Metagenome 3300000426 *Microbiome Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine sediment microbial community from Union City, CA, USA - Pond 1C Sediment 3 DOE Joint Genome Institute (JGI) 3300000426 Metagenome Analysis released based on JGI ITS Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Enviromental 37.569083 -122.103267 90642744 224856 130 0 283 0 Unrestricted 0.0 Metagenome 3300035153 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Sediment microbial communities from coastal wetland in Texas, United States - D0819U02 DOE Joint Genome Institute (JGI) 3300035153 Metagenome Analysis metaspades v. 3.13.0 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.039 565772760 1406695 517 9 817 9 SRX8272970 Unrestricted 6.24 Metagenome 3300069495 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_043-M-20160727-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069495 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 35967913 109906 146 3 269 5 0.0 Metagenome 3300020430 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160) CEA Genoscope 3300020430 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -8.8951 -140.3174 1164677957 2786077 536 106 893 218 0.0 Metagenome 3300044745 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 138-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044745 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9359 -107.012 344255007 891999 398 42 779 54 Unrestricted 8.79 Metagenome 3300029682 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 006_6_23_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029682 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 150497204 182394 90 0 151 0 0.0 Metagenome 3300046060 *Microbiome Permanent Draft Halite microbial communities from Atacama Desert, Chile Halite microbial communities from Salar Grande, Atacama Desert, Chile - SGT2 Novogene 3300046060 Metagenome Analysis metaWRAP v. 1.3.2 No Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Halite Rock-dwelling (endoliths) Unclassified Halite -20.953 -70.019 152796688 185559 24 1 22 1 0.0 Metagenome 3300005626 *Microbiome Permanent Draft Activated sludge microbial communities from EBPR reactors in the US and Australia Activated sludge viral communities from EBPR reactors in Madison, Wisconsin, USA v2 (version 2) DOE Joint Genome Institute (JGI) 3300005626 Metagenome Analysis Phrap 4, JAZZ released based on JGI ITS No Yes phugenholtz@lbl.gov Phil Hugenholtz Yes 16998472 Engineered WWTP Unclassified Activated sludge Unclassified Activated sludge 43.078418 -89.386482 41128326 36578 18 0 32 0 Unrestricted 0.0 Metagenome 3300016659 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water reservoir in Singapore - WB_Site 6a, Oct Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016659 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Lake Freshwater Unclassified freshwater 1.35 103.87 76410496 88046 14 0 16 0 0.0 Metagenome 3300025630 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025630 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 309592648 703339 204 7 328 11 SRX2853520 Unrestricted 0.0 Metagenome 3300009429 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS844 no min length Marine Biological Laboratory 3300009429 Metagenome Analysis Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow hydrothermal vent diffuse flow fluid 18.374735 -81.797326 7.55 791626083 2953297 617 9 1644 19 0.0 Metagenome 3300009854 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 78 mira Center for Advanced Technologies in Genomics, Sao Paulo University 3300009854 Metagenome Analysis mira released per JGI data release policy No Yes joao.c.setubal@gmail.com Joao Setubal No Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 143589065 234282 299 6 438 3 0.0 Metagenome 2030936006 *Microbiome Permanent Draft Fungus garden microbial communities from leaf-cutting ants in Gamboa, Panama Fungus garden microbial communities from leaf-cutting ants in Gamboa, Panama - Dump top 454 Life Sciences, DOE Joint Genome Institute (JGI) 2030936006 Metagenome Analysis Newbler v. October 2008 released per Simon -- IMGSUPP2949 No Yes gsuen@wisc.edu Garret Suen Yes 20885794 Environmental Terrestrial Insects nest Nest Nest dump Fungus garden 9.1167 -79.7 160827138 422825 61 0 130 0 0.0 Metagenome 3300020554 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 17AUG2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020554 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 125571601 284300 105 14 251 20 SRX1989909 Unrestricted 0.0 Metagenome 7000000207 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 158742018 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000207 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 55616492 104969 0 0 0 0 0.0 Metagenome 3300006650 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T5 (1) (Live) Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times Shell Corporation 3300006650 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl .ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 46592645 89875 52 0 84 0 0.0 Metagenome 3300026692 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 38 (SPAdes) DOE Joint Genome Institute (JGI) 3300026692 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 15413215 39450 17 0 60 1 SRX4340825 Unrestricted 0.0 Metagenome 3300035398 *Microbiome Permanent Draft Rhizosphere microbial communities from salt marsh grasses in Alabama, United States Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 DOE Joint Genome Institute (JGI) 3300035398 Metagenome Analysis metaspades v. 3.13.0 Yes Yes omason@fsu.edu Olivia Mason No Host-associated Plants Rhizosphere Roots Unclassified rhizosphere 30.2619 -88.2383 1835377755 4108756 1322 35 2308 56 SRX7707044, SRX7707045 Unrestricted 0.0 Metagenome 3300056876 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River freshwater marsh, Georgia, USA - F2L_0_1 DOE Joint Genome Institute (JGI) 3300056876 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.9762234 -81.70738203 1775866329 2856326 660 18 1091 21 Unrestricted 11.97 Metagenome 3300025934 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025934 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 3338852555 8083714 1389 112 2607 193 SRX3203323 Unrestricted 0.0 Metagenome 3300059731 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1563A-02 (v5.1 annotation) (version 4) DOE Joint Genome Institute (JGI) 3300059731 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2103 -123.7517 191134322 425573 130 5 211 13 SRX2753761 Unrestricted 0.0 Metagenome 3300026245 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from Midwestern USA - DC3-135 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026245 Metagenome Analysis spades v. 3.11.1 Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 20963683 74125 81 11 129 17 SRX2770441 Unrestricted 0.0 Metagenome 3300033291 *Microbiome Permanent Draft Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-10 DOE Joint Genome Institute (JGI) 3300033291 Metagenome Analysis spades v. 3.12.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment salt marsh 42.759 -70.891 815798096 1847861 583 5 918 8 SRX5801077 Unrestricted 8.98 Metagenome 3300047458 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_141126.NP1 DOE Joint Genome Institute (JGI) 3300047458 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 944017025 1996055 576 111 916 198 Unrestricted 11.43 Metagenome 3300022932 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L074-202C-1 DOE Joint Genome Institute (JGI) 3300022932 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 850068750 1803059 603 151 857 220 SRX4801455 Unrestricted 10.99 Metagenome 3300036393 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Iphinoe sp. HA4291-MV1 and co-occurring heterotrophs from soil from Maunawili Falls, Hawaii, United States - 20190125_22 DOE Joint Genome Institute (JGI) 3300036393 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Unclassified Soil Unclassified Soil 21.3515 -157.769 124576626 141892 40 1 49 4 SRX8848761 Unrestricted 73.65 Metagenome 3300003095 *Microbiome Permanent Draft Food microbial community from Turkish kefir grains Food microbial community from Turkish kefir grains- Kefir Grain Sample 2 Istanbul Bilgi University 3300003095 Metagenome Analysis SOAPdenovo v. May-2012 Made public because these are downloaded from Genbank No Yes handan.can@bilgi.edu.tr Can,H Yes 24750812 Engineered Food production Fermented dairy products Dairy products Unclassified Food 41.15 26.78 4728624 7276 0 0 0 0 0.0 Metagenome 3300026370 *Microbiome Permanent Draft Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 F5 DOE Joint Genome Institute (JGI) 3300026370 Metagenome Analysis spades v. 3.11.1 Yes Yes ccraft@indiana.edu Chris Craft No Environmental Aquatic Wetlands Freshwater Sediment sediment 31.3377 -81.4644 86082388 256705 329 8 565 12 SRX4796695 Unrestricted 6.25 Metagenome 3300028634 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Lys DOE Joint Genome Institute (JGI) 3300028634 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 317233458 511147 232 0 320 1 SRX5281798 Unrestricted 24.59 Metagenome 3300007009 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 764062976 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007009 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 475444 1467 3 0 7 0 SRX024176 0.0 Metagenome 3300024463 *Microbiome Permanent Draft Vaginal microbial communities from lab mice Vaginal microbial communities from lab mice with HSV-2 infection, Madrid, Spain - C1, day 8 Polytechnic University of Valencia 3300024463 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Vagina Reproductive system Unclassified mice vagina 40.4191094 -3.6725753 4215972 5243 1 0 1 0 0.0 Metagenome 3300006954 *Microbiome Permanent Draft Agricultural soil microbial communities from Utah and Georgia to study Nitrogen management Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control DOE Joint Genome Institute (JGI) 3300006954 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jeanette.norton@usu.edu Jeanette Norton No Environmental Terrestrial Agricultural land Soil Unclassified Agricultural soil 33.8834 -83.4195 3103841660 7366101 3388 257 5822 450 SRX2923450 Unrestricted 0.0 Metagenome 3300027543 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027543 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 264059719 700213 428 15 850 46 SRX2574189 Unrestricted 0.0 Metagenome 3300033627 *Microbiome Permanent Draft Metagenomic SGS 2x251 Cornfield soil microbial communities from Madison, WI, USA - CF9 Illumina 3300033627 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Agricultural land Soil 43.056543 -89.477477 476747208 1785112 263 13 576 25 0.0 Metagenome 3300043601 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 054-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043601 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9208 -106.9511 442191499 1217106 564 18 1084 40 Unrestricted 7.13 Metagenome 3300039383 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 265_B Beijing Genomics Institute (BGI) 3300039383 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 30109889 35301 19 0 30 0 ERX491043 0.0 Metagenome 3300057160 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHL_01 DOE Joint Genome Institute (JGI) 3300057160 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.40849 -82.168434 208992853 326127 7 12 6 13 Restricted 0.0 Metagenome 3300044986 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater bacterial communities from Lake Mendota, Wisconsin, United States - ME_2020-08-25_10m_Bacteria_A DOE Joint Genome Institute (JGI) 3300044986 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 1108667400 1666505 430 56 624 74 Unrestricted 16.0 Metagenome 3300019885 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - L1m2 DOE Joint Genome Institute (JGI) 3300019885 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.8925 -106.9111 303772488 658464 254 14 479 21 SRX3958719, SRX3958720 Unrestricted 0.0 Metagenome 3300049840 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_181031.NP2 DOE Joint Genome Institute (JGI) 3300049840 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 455783258 1035644 327 13 523 21 Restricted 0.0 Metagenome 3300056665 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 18O.20C.14 SIP fraction DOE Joint Genome Institute (JGI) 3300056665 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 283313089 413991 92 22 164 29 Unrestricted 11.67 Metagenome 3300069624 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_004-M-20140325-COMP-DNA1 re-annotation Argonne National Laboratory 3300069624 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 3087417 9452 36 6 82 22 ERX2134049 0.0 Metagenome 3300020714 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 14NOV2007 epilimnion DOE Joint Genome Institute (JGI) 3300020714 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 116879832 216818 120 12 150 26 Unrestricted 0.0 Metagenome 3300030013 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3 DOE Joint Genome Institute (JGI) 3300030013 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 1096601831 2266006 294 59 451 92 SRX5799165 Unrestricted 12.69 Metagenome 3300001254 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 03JUL2008 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300001254 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.099444 -89.404444 7684006 12485 10 4 16 7 SRX3310937 Unrestricted 0.0 Metagenome 3300021065 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 500m 12015 DOE Joint Genome Institute (JGI) 3300021065 Metagenome Analysis spades v. 3.10.1 Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.6907 -122.3448 430216972 968699 329 60 512 109 SRX4010487 Unrestricted 34.6 Metagenome 3300012053 *Microbiome Permanent Draft Norwegian Young Sea Ice 2015 - N-ICE15 Seawater microbial communities from Norwegian Young Sea Ice, Arctic Ocean, Norway, 2015 - N-ICE15, floe 2, site 1, 250m LGC Genomics 3300012053 Metagenome Analysis Ray v 2.3.1 released by JGI data releasing policy No Yes antonioggsousa@gmail.com; cmagalhaes@ciimar.up.pt Antonio Sousa; Catarina Magalh?es No Environmental Aquatic Mesopelagic Marine Unclassified marine 83.166667 22.016944 4996519 10469 8 0 12 0 0.0 Metagenome 3300037276 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_C3 DOE Joint Genome Institute (JGI) 3300037276 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost peat 68.3532 19.0477 804354517 1663332 359 60 583 102 SRX8397159 Unrestricted 7.74 Metagenome 3300045684 *Microbiome Permanent Draft Sediment microbial communities from various rivers and their estuaries in the United States Sediment microbial communities from Mad River estuary, California, United States - BTRS19_Sengupta_13S DOE Joint Genome Institute (JGI) 3300045684 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sg.aditi@gmail.com Aditi Sengupta No Environmental Aquatic Intertidal zone Marine Estuary sediment 40.9571 -124.1232 1781053630 2712510 844 42 1327 55 Unrestricted 13.73 Metagenome 3300032165 *Microbiome Finished Oil-contaminated soil microbial communities from Mossoro, RN, Brazil Oil-contaminated soil microbial communities from Mossoro, RN, Brazil - SC1 Federal University of Rio Grande do Norte 3300032165 Metagenome Analysis Geneious v. 10.2.3 released by JGI data releasing policy No Yes lfagnez@ufrnet.br Lucymara Agnez-Lima No Environmental Terrestrial Unclassified Soil Oil-contaminated soil -5.1904 -37.3444 671248334 2480251 3128 91 5689 191 0.0 Metagenome 3300034812 *Microbiome Permanent Draft Marine planktonic microbial communities from Bay of Bengal, Indian Ocean Marine planktonic microbial communities from Bay of Bengal, Indian Ocean - 3H (SRX5580379-SRR8790596) Nanyang Technological University 3300034812 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released by JGI data releasing policy Yes Yes flauro@ntu.edu.sg Federico Lauro No Environmental Aquatic Unclassified Marine Unclassified Marine planktonic 2.49 83.99 629750633 1306080 414 169 652 271 0.0 Metagenome 2077657002 *Microbiome Permanent Draft Sulfur spring sediment and crust microbial communities from Zodletone, Oklahoma, USA Sulfur spring sediment and crust microbial communities from Zodletone, Oklahoma, USA - B4 Mogene LC 2077657002 Metagenome Analysis none (individual reads) released per JGI data release policy No Yes aspain@ou.edu Anne M. Spain, Anne Spain No Environmental Aquatic Warm (34-42C) Thermal springs Sediment Sulfur spring sediment and crust 35.100293 -98.749601 6.68-7.05 39726144 110752 13 0 490 0 0.0 Metagenome 3300042682 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A56 University of California, Davis 3300042682 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 205124957 572310 257 13 520 12 0.0 Metagenome 3300003813 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH15Jun09 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003813 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 75343593 169417 89 25 137 27 SRX2566687 Unrestricted 0.0 Metagenome 3300021477 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O DOE Joint Genome Institute (JGI) 3300021477 Metagenome Analysis spades v. 3.11.1-check Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 2968654672 6359180 917 130 1544 234 SRX4024583 Unrestricted 9.06 Metagenome 3300052917 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_6B2_100218_2020 DOE Joint Genome Institute (JGI) 3300052917 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 2081385519 3206994 572 223 992 288 Unrestricted 24.73 Metagenome 3300052658 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Photosynthetic mat viral communities from Mushroom Spring, YNP, Wyoming, United States - MS20090730 R12b DOE Joint Genome Institute (JGI) 3300052658 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified hot spring phototrophic mat 44.5387 -110.798 14164902 23784 7 0 15 0 Unrestricted 1388.74 Metagenome 3300000732 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 DOE Joint Genome Institute (JGI) 3300000732 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 40831740 129210 197 34 327 62 SRX2021671, SRX1986454, SRX1986453 Unrestricted 0.0 Metagenome 3300023196 *Microbiome Permanent Draft Sediment microbial communities from Stefan Fjord, Tortel, Patagonia, Chile Sediment microbial communities from Stefan Fjord, Tortel, Patagonia, Chile - Sample 4 University of Bristol 3300023196 Metagenome Analysis SPADES v. 3.11.1 released by JGI data releasing policy No Yes maisie.nash@bristol.ac.uk Maisie Nash No Environmental Aquatic Unclassified Sediment Unclassified sediment -47.773267 -73.696167 7.647 175632561 220943 23 3 28 4 0.0 Metagenome 3300030746 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_1 DOE Joint Genome Institute (JGI) 3300030746 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 866250470 1843574 445 126 651 160 SRX5357865 Unrestricted 12.27 Metagenome 3300047501 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Lake sediment microbial communities from Stordalen Mire, Sweden - 2015 IH-HC-7_12cm DOE Joint Genome Institute (JGI) 3300047501 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Aquatic Lake Freshwater Sediment Lake sediment 68.2151 19.0271 498431900 822748 237 2 509 1 Restricted 21.69 Metagenome 3300024187 *Microbiome Permanent Draft Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK13 DOE Joint Genome Institute (JGI) 3300024187 Metagenome Analysis spades v. 3.11.1 Yes Yes ckelly1@mix.wvu.edu Charlene Kelly No Environmental Terrestrial Temperate forest Soil Bulk soil soil 40.4449 -87.0297 231643836 612639 281 12 508 27 SRX4547515 Unrestricted 7.83 Metagenome 3300038820 *Microbiome Permanent Draft Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden Peat microbial communities from Degero Stormyr, Kulbacksliden Experimental Forest, Vasterbotten, Sweden - Degero_peatbog22 BILS 3300038820 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Terrestrial Peat Soil Bog peat 64.1833 19.55 5209293 12942 11 2 15 3 ERX1594844 0.0 Metagenome 3300032118 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15 DOE Joint Genome Institute (JGI) 3300032118 Metagenome Analysis spades v. 3.12.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5099 -110.3566 3543840717 7092621 2091 13 3450 22 SRX6379722 Unrestricted 12.76 Metagenome 3300010158 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_MF_MetaG DOE Joint Genome Institute (JGI) 3300010158 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes david.walsh@concordia.ca David Walsh Yes 29921005 Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 46.8319 -72.5 993429986 1832741 590 106 883 147 SRX2524537 Unrestricted 0.0 Metagenome 3300047399 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Tapajos River, Santarem, Brazil - ROCA175 DOE Joint Genome Institute (JGI) 3300047399 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater -2.4843 -55.0075 337542074 751881 210 47 365 71 Unrestricted 18.39 Metagenome 3300009504 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Lake sediment microbial communities from Walker lake, Nevada to study Microbial Dark Matter (Phase II) - Walker Lake 11/02/13 Deep Sediment DOE Joint Genome Institute (JGI) 3300009504 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes rstepanauskas@bigelow.org; duane.moser@dri.edu Ramunas Stepanauskas; Duane Moser No Environmental Aquatic Lake Freshwater Unclassified Sediment 38.7 -118.7 1039776555 1930143 668 4 1111 11 SRX2948776 Unrestricted 0.0 Metagenome 3300035337 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada - 18E_1_5_7 mgh University of Alberta 3300035337 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified wastewater 56.7292 -111.3885 62528329 84447 45 0 71 0 0.0 Metagenome 3300027171 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF039 (SPAdes) DOE Joint Genome Institute (JGI) 3300027171 Metagenome Analysis spades v. 3.11.1 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.550409 -72.180244 58529717 174370 64 18 98 31 SRX2014390 Unrestricted 0.0 Metagenome 3300046832 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR pl5 DOE Joint Genome Institute (JGI) 3300046832 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 965595649 1444725 340 81 419 117 Unrestricted 0.0 Metagenome 3300001639 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF003 DOE Joint Genome Institute (JGI) 3300001639 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 6998714 22012 28 3 36 8 SRX2014333 Unrestricted 0.0 Metagenome 3300005912 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKD DOE Joint Genome Institute (JGI) 3300005912 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli, Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 548632179 1176009 282 48 379 83 SRX2746610 Unrestricted 0.0 Metagenome 3300001166 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 DOE Joint Genome Institute (JGI) 3300001166 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 69038182 179215 147 42 219 80 SRX3312018 Unrestricted 0.0 Metagenome 3300025285 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_300m (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025285 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; shallam@interchange.ubc.ca; jkjarett@lbl.gov Ramunas Stepanauskas; Steven Hallam; Jessica Jarett No Environmental Aquatic Lake Freshwater Unclassified freshwater 50.0621 -124.7214 372521135 1083409 401 1 702 5 SRX3570960 Unrestricted 13.81 Metagenome 3300002914 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm DOE Joint Genome Institute (JGI) 3300002914 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 643517703 1484858 483 36 920 59 SRX2565026 Unrestricted 0.0 Metagenome 3300037527 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR14_NA11 DOE Joint Genome Institute (JGI) 3300037527 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Crustal Fluids crustal fluids 47.7583 -127.7622 125538682 281749 213 9 315 16 SRX9096609 Unrestricted 67.72 Metagenome 3300031512 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20051001_T8 DOE Joint Genome Institute (JGI) 3300031512 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 328936691 665865 230 0 309 1 SRX5650854 Unrestricted 182.84 Metagenome 3300040484 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_005-M-20170731-COMP-DNA1 Battelle Memorial Institute 3300040484 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 3880782 11687 44 10 87 13 0.0 Metagenome 3300045890 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Geyser Creek, Yellowstone National Park, WY, United States - MSUNE_GC_02 University of Wisconsin, Madison 3300045890 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.68772 -110.72821 112571913 193602 43 6 61 0 0.0 Metagenome 3300011630 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00929 Weill Cornell Medical College 3300011630 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.74 -73.94 31438817 43383 11 0 16 0 SRX822892 0.0 Metagenome 3300010393 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Zodletone spring, Oklahoma to study Microbial Dark Matter (Phase II) - Zodletone Spring source 0.5m metaG DOE Joint Genome Institute (JGI) 3300010393 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; mostafa@okstate.edu Ramunas Stepanauskas; Mostafa Elshahed No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 216124024 513954 213 1 419 0 SRX2525190 Unrestricted 0.0 Metagenome 3300038539 *Microbiome Permanent Draft Organic and conventional farm associated microbial communities from Canada and USA Wastewater microbial communities from natural feedlot in Alberta, Canada - WW95 Colorado State University 3300038539 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified Wastewater 53.5 -112.06 185763280 354090 227 9 365 11 0.0 Metagenome 3300014629 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01331 Weill Cornell Medical College 3300014629 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.83 -73.86 21619737 28548 6 0 9 0 SRX823271 0.0 Metagenome 3300048894 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Soil microbial communities from greenhouse in W.K. Kellogg Biological Station, Michigan, USA - CIR soil_3b N15 DOE Joint Genome Institute (JGI) 3300048894 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Environmental Terrestrial Unclassified Soil Unclassified Soil 42.40581 -85.40228 1428533290 2380556 477 20 839 31 Unrestricted 13.44 Metagenome 3300027588 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepC_8d DOE Joint Genome Institute (JGI) 3300027588 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 94561825 173112 83 7 131 14 SRX5245216 Unrestricted 11.64 Metagenome 3300002610 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A1w-12 DOE Joint Genome Institute (JGI) 3300002610 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 327779 1081 21 2 43 6 SRX1991160 Unrestricted 0.0 Metagenome 3300070536 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt-Chequamegon, Wisconsin, USA - STEI_021-M-20170705-COMP-DNA1 Battelle Memorial Institute 3300070536 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 45.834307 -90.085088 5.22-5.9 4137835 13832 52 0 84 0 0.0 Metagenome 3300038485 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - OLB3 Michigan State University 3300038485 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 33.75383 -118.1934 30590272 82262 1 0 7 0 0.0 Metagenome 3300069568 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_008-M-20160730-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069568 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 28716333 86612 148 9 294 17 0.0 Metagenome 3300041416 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - Aug2018WEW_P20_D5 (version 2) DOE Joint Genome Institute (JGI) 3300041416 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 871746508 1211644 213 3 315 7 SRX10167247 Unrestricted 0.0 Metagenome 3300011934 *Microbiome Permanent Draft Stromatolite microbial communities from hypersaline Socompa Lake, Salta, Argentina Stromatolite microbial communities from hypersaline Socompa Lake, Salta, Argentina - SSH_201008 Max Planck Institute for Molecular Genetics 3300011934 Metagenome Analysis SPAdes 3.8.0 released by JGI data releasing policy Yes Yes dgkurt@gmail.com Daniel Kurth No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Stromatolites in hypersaline lake -24.534588 -68.208687 8.6 148027649 167983 37 1 68 3 SRX1684141, SRX1684140 0.0 Metagenome 3300069515 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from UNDERC, Great Lakes, MI, USA - UNDE_035-M-20160803-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069515 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 46.23388 -89.53725 47436744 141459 61 6 143 9 0.0 Metagenome 3300012546 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100538 University of Pennsylvania 3300012546 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8057840 16612 24 11 44 17 SRX756216 0.0 Metagenome 3300050119 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim1 50-54 DOE Joint Genome Institute (JGI) 3300050119 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.352987 19.047292 630313922 910897 173 3 223 2 Restricted 15.87 Metagenome 3300012619 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100452 University of Pennsylvania 3300012619 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 21910786 48000 20 0 25 0 SRX756546 0.0 Metagenome 3300003336 *Microbiome Permanent Draft Upper troposphere microbial communities above oceans and continental USA that affect ice or cloud condensation nuclei Upper troposphere microbial communities from above oceans and continental USA - SEAC4RS-RF9-009 DOE Joint Genome Institute (JGI) 3300003336 Metagenome Analysis Yes Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Air Unclassified Outdoor Air Unclassified Upper troposphere 1236473 4143 30 5 11 2 Unrestricted 0.0 Metagenome 3300049932 *Microbiome Permanent Draft Soil biocrust microbial and viral communities from model ecosystem in Berkeley Lab, California, USA Soil biocrust microbial communities from model ecosystem in Berkeley Lab, California, USA - 0hr_A DOE Joint Genome Institute (JGI) 3300049932 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sroux@lbl.gov Simon Roux No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil biocrust 37.87739 -122.250939 1679472694 2784081 725 19 1107 22 Restricted 36.09 Metagenome 3300004204 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 19_HOW5 DOE Joint Genome Institute (JGI) 3300004204 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 150380416 352061 88 3 151 7 SRX2720157 Unrestricted 0.0 Metagenome 3300033760 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Loreto, Peru - SR_C DOE Joint Genome Institute (JGI) 3300033760 Metagenome Analysis spades v. 3.13.0 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Unclassified peatland -4.5438 -74.6258 188694451 610938 390 10 692 21 SRX7525195 Unrestricted 5.46 Metagenome 3300030659 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2) (version 2) DOE Joint Genome Institute (JGI) 3300030659 Metagenome Analysis spades v. 3.12.0 Yes Yes loy@microbial-ecology.net; Michael.Pester@dsmz.de Alexander Loy; Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.1318 11.881 878106051 1690975 289 6 467 9 Unrestricted 0.0 Metagenome 3300060645 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Caribou Creek Watershed, Alaska, USA - BONA_006-O-20210707-comp-1 DOE Joint Genome Institute (JGI) 3300060645 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Terrestrial soil 65.176107 -147.544089 936516787 1247938 179 133 256 180 Unrestricted 50.7 Metagenome 3300022840 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 1-5 DOE Joint Genome Institute (JGI) 3300022840 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3535 19.0472 128687113 304103 108 14 197 36 SRX4415343, SRX8658335 Unrestricted 0.0 Metagenome 3300012290 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100395 University of Pennsylvania 3300012290 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3383958 7303 3 3 5 3 SRX756262 0.0 Metagenome 3300045980 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_7_C DOE Joint Genome Institute (JGI) 3300045980 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 194051122 240166 107 1 119 2 Restricted 149.1 Metagenome 2162886007 *Microbiome Draft Switchgrass rhizosphere microbial communities from Michigan, USA Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 DOE Joint Genome Institute (JGI) 2162886007 Metagenome Analysis Newbler and/or Velvet released based on JGI ITS No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.794771 -84.393804 221354755 298539 20 7 66 9 Unrestricted 0.0 Metagenome 3300035459 *Microbiome Permanent Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - RDC-1_at_8-9_cm Genome Quebec 3300035459 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.80159 -73.41443 939878254 2223477 729 5 1514 12 0.0 Metagenome 3300002299 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 01NOV2011 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002299 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 13989807 34606 30 9 68 14 SRX1989704 Unrestricted 0.0 Metagenome 3300001773 *Microbiome Permanent Draft Subterranean sulfidic spring microbial communities from the Max Planck Institute, Germany Glenwood Hot Springs L4M 3300001773 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes karen.rossmassler@gmail.com Karen Rossmassler No Environmental Aquatic Unclassified Thermal springs Unclassified Subterranean sulfidic spring 39.54798 -107.3226 6.1 55809917 174261 44 7 85 6 0.0 Metagenome 3300039348 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 203_B Beijing Genomics Institute (BGI) 3300039348 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 14680605 15280 13 0 15 0 ERX491001 0.0 Metagenome 3300027056 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027056 Metagenome Analysis spades v. 3.11.1 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37379502 -119.2722385 146901183 348934 174 10 297 20 SRX2523280 Unrestricted 0.0 Metagenome 3300018057 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150 DOE Joint Genome Institute (JGI) 3300018057 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 1615286087 3083631 801 23 1333 44 SRX3960064 Unrestricted 11.24 Metagenome 3300034128 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_06D_16 DOE Joint Genome Institute (JGI) 3300034128 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9144 -147.8354 674284288 1562946 662 14 1184 21 SRX7633803 Unrestricted 6.48 Metagenome 3300001121 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP2253 DOE Joint Genome Institute (JGI) 3300001121 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 10.09 -99.25 28979385 73505 80 4 129 0 SRX1981968 Unrestricted 0.0 Metagenome 3300049673 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I13_A_3_drought DOE Joint Genome Institute (JGI) 3300049673 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 171294599 350575 257 23 514 44 Unrestricted 11.5 Metagenome 3300047090 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 soil DOE Joint Genome Institute (JGI) 3300047090 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121012 -123.271438 5.34 1333776884 2206206 460 18 753 32 Unrestricted 13.02 Metagenome 3300025977 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_ThreeSqB_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025977 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.131752 -122.266335 97025147 214986 158 3 246 3 SRX7149106 Unrestricted 0.0 Metagenome 3300049338 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CBF2 DOE Joint Genome Institute (JGI) 3300049338 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 275008196 799219 425 9 737 16 Unrestricted 6.22 Metagenome 3300046805 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Columbia River, Richland, Washington, USA - columbia_2019_sw_WHONDRS-S19S_0074 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300046805 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 46.3763 -119.2729 204403205 341384 126 73 218 103 Unrestricted 0.0 Metagenome 3300006313 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0770m University of Hawaii 3300006313 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Aphotic zone Marine 22.75 -158.0 907369247 1891699 1050 19 1625 41 0.0 Metagenome 3300003211 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01K3-12 DOE Joint Genome Institute (JGI) 3300003211 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 182467 578 25 1 49 3 SRX2576204 Unrestricted 0.0 Metagenome 3300026485 *Microbiome Permanent Draft Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 F6 DOE Joint Genome Institute (JGI) 3300026485 Metagenome Analysis spades v. 3.11.1 Yes Yes ccraft@indiana.edu Chris Craft No Environmental Aquatic Wetlands Freshwater Sediment sediment 31.3377 -81.4644 170310039 485404 367 11 687 7 SRX4796512 Unrestricted 6.62 Metagenome 3300022397 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Garden Lake, Rottnest Island (WA - Australia) - GL2WO3 JM15 AGRF 3300022397 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.99737 115.536569 44085082 79405 30 0 51 0 0.0 Metagenome 3300065630 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 812 in Tilley, Alberta, Canada - S00JY_0461 Microbiome Insights 3300065630 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 50.2538415 -111.39339 70333803 102972 72 0 116 2 0.0 Metagenome 3300028677 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant22 DOE Joint Genome Institute (JGI) 3300028677 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1150727 -123.147 837131880 1419541 758 17 1111 22 SRX5338800 Unrestricted 35.63 Metagenome 3300017676 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - W13-16 University of Michigan 3300017676 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.39757 -85.38536 36766766 50480 20 0 27 0 0.0 Metagenome 3300044525 *Microbiome Permanent Draft Soil microbial communities from Jackson County, Colorado, USA Soil microbial communities from Jackson County, Colorado, USA - Chrono_fire_18CS DOE Joint Genome Institute (JGI) 3300044525 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Unclassified Soil Unclassified Soil 40.4242 -106.2374 436947778 779110 220 24 431 38 SRX20649961 Unrestricted 17.43 Metagenome 3300033068 *Microbiome Finished Seoul Wastewater Treatment Plant Virome, South Korea Raw sewage viral community from Seonam wastewater treatment plant, Seoul, South Korea - SWWTP-input v.1 Macrogen 3300033068 Metagenome Analysis SPAdes v. 3.10.1 released by JGI data releasing policy No Yes chojc@inha.ac.kr Jang-Cheon Cho No Engineered WWTP Unclassified Wastewater Unclassified Wastewater 37.577125 126.82583 47668010 66984 0 0 0 0 0.0 Metagenome 3300053147 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere DOE Joint Genome Institute (JGI) 3300053147 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.588226 -123.192776 626401455 971406 247 109 371 143 Unrestricted 0.0 Metagenome 3300017411 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_NF_12SEP2016_LD1 MG DOE Joint Genome Institute (JGI) 3300017411 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 188671996 343081 41 56 62 105 SRX3927013 Unrestricted 9.38 Metagenome 3300000939 *Microbiome Permanent Draft Sinkhole freshwater microbial communities from Lake Huron, US Sinkhole freshwater microbial communities from Lake Huron, USA - r2gDNA Day3 University of Michigan 3300000939 Metagenome Analysis released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Sinkhole Freshwater Unclassified Sinkhole freshwater 45.19843 -83.32721 51371394 124687 116 7 139 21 0.0 Metagenome 3300014131 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_147 The George Washington University (GWU) 3300014131 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 26596944 47460 30 1 62 9 SRX656284 0.0 Metagenome 3300048878 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume microbial communities from North Pacific Ocean - CTD-AT42-06-009-32m-0.1 DOE Joint Genome Institute (JGI) 3300048878 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 9.83899 -104.29088 127215680 240851 86 8 117 13 Unrestricted 83.68 Metagenome 2029527000 *Microbiome Permanent Draft Green-waste compost microbial community at University of California, Davis, USA, from solid state bioreactor Green-waste compost microbial community at University of California, Davis, USA, from solid state bioreactor - Inoculum 16S MiniPCR DOE Joint Genome Institute (JGI) 2029527000 Metagenome Analysis GBAN.newbler.contigs.lucy-99.8.noN.noX.fasta released based on JGI ITS No Yes phugenholtz@lbl.gov Phil Hugenholtz Yes 20098679 Engineered Solid waste Composting Grass Bioreactor Green-waste compost 38.796568 -121.881912 110687544 258764 89 0 172 0 Unrestricted 0.0 Metagenome 3300060430 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210604_08_21 DOE Joint Genome Institute (JGI) 3300060430 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 717721128 1079432 311 167 376 243 Unrestricted 24.21 Metagenome 3300043332 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-349 Genome Quebec 3300043332 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 51.591362 -113.752929 1844610046 4489631 500 76 922 126 0.0 Metagenome 3300009771 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC032_MetaG DOE Joint Genome Institute (JGI) 3300009771 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.3 -88.15 830047872 1602718 731 7 1207 12 SRX2338801 Unrestricted 0.0 Metagenome 3300055350 *Microbiome Permanent Draft Co-cultures of unialgal cyanobacteria with co-existing heterotrophic bacteria from Dresden University of Technology, Germany Co-culture of unialgal cyanobacterium with co-existing heterotrophic bacterium from Dresden University of Technology, Germany - Nostoc_62.1/Streptobacillus DOE Joint Genome Institute (JGI) 3300055350 Metagenome Analysis MetaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes paul.dagostino@tu-dresden.de Paul M. D'Agostino No Host-associated Microbial Unclassified Bacteria Unclassified Lab culture 51.028586 13.73135 47342244 46027 18 0 20 0 Restricted 28.02 Metagenome 3300009936 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R9 University of New South Wales 3300009936 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 108218509 174337 66 1 89 3 0.0 Metagenome 3300013907 *Microbiome Permanent Draft Fecal viral communites from wild urban brown rats in Berlin, Germany Fecal viral communites from wild urban brown rats in Berlin, Germany - Mu/10/1799 Freie University Berlin 3300013907 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Fecal 52.529611 13.401343 1546951 3644 1 0 4 0 SRX616524 0.0 Metagenome 3300029495 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 098_4_29_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029495 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 229253114 342734 286 0 376 0 0.0 Metagenome 3300039942 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA FertPrarie soil microbial communities from Boone County, Iowa, USA - PF32-Micro-July2012 Iowa State University 3300039942 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land FertPrarie soil 42.01375 -93.783837 19428374 64421 94 3 198 8 0.0 Metagenome 3300013691 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100289 University of Pennsylvania 3300013691 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8228913 25733 21 0 35 0 SRX756612 0.0 Metagenome 3300029920 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_3 DOE Joint Genome Institute (JGI) 3300029920 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 68.3532 19.0477 522875372 1174336 251 30 355 54 SRX5355598 Unrestricted 9.36 Metagenome 3300001412 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012 DOE Joint Genome Institute (JGI) 3300001412 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov, NNIvanova@lbl.gov; janet.jansson@pnnl.gov Janet Jansson, Natalia Ivanova; Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 116204062 257268 104 1 172 6 SRX1987242 Unrestricted 0.0 Metagenome 3300027662 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027662 Metagenome Analysis spades v. 3.11.1 Yes Yes loy@microbial-ecology.net; Michael.Pester@dsmz.de Alexander Loy; Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.1318 11.881 488794124 963345 155 2 246 1 Unrestricted 0.0 Metagenome 3300005719 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 DOE Joint Genome Institute (JGI) 3300005719 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere 42.3948 -85.3738 6242769574 18498781 4111 312 6943 572 SRX2785858 Unrestricted 0.0 Metagenome 3300070600 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_072-M-20190618-COMP-DNA1 Battelle Memorial Institute 3300070600 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 45.824274 -121.966341 5.32-5.8 46095007 142162 96 8 161 14 0.0 Metagenome 3300018430 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Bagasse, Gen0, Rep 2, Chloramphenicol DOE Joint Genome Institute (JGI) 3300018430 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4148 -119.8405 2557718151 4649398 4659 2311 7264 4239 SRX3963290 Unrestricted 11.21 Metagenome 3300020341 *Microbiome Permanent Draft Marine microbial communities from Tara Oceans Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX555908-ERR599066) CEA Genoscope 3300020341 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr William William Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -8.895 -142.6228 288208174 722404 215 12 368 15 0.0 Metagenome 3300029200 *Microbiome Permanent Draft Environmental microbial communities from various locations to study antibiotic resistance - The University of Hong Kong Biofilm microbial communities from University of Hong Kong - Biofilm University of Hong Kong 3300029200 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Unclassified Unclassified Unclassified Biofilm 66096889 145882 17 3 28 2 SRX371699 0.0 Metagenome 3300039062 *Microbiome Permanent Draft Seagrass microbial communities from Seahorse Key, Florida, USA Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 University of Florida 3300039062 Metagenome Analysis Megahit v. 1.1.4 released by JGI data releasing policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Plants Unclassified Rhizome Unclassified seagrass rhizome 29.14 -83.685 634055675 794618 164 42 214 59 0.0 Metagenome 3300003144 *Microbiome Permanent Draft Marine sediment microbial communities from deep subseafloor Marine sediment microbial communities from deep subseafloor - Sample from 18.6 mbsf Japan Agency for Marine-Earth Science and Technology 3300003144 Metagenome Analysis Made public because these are downloaded from Genbank No Yes takamih@jamstec.go.jp Hideto Takami Yes 24624126 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Marine sediment 41.1773 142.2013 39626905 78193 21 0 50 3 0.0 Metagenome 3300000705 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 55 DOE Joint Genome Institute (JGI) 3300000705 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 10918086 30877 39 0 72 0 SRX4340981 Unrestricted 0.0 Metagenome 3300013227 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100421 University of Pennsylvania 3300013227 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 32667717 62055 16 0 35 0 SRX756577 0.0 Metagenome 3300042755 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Sand microcosm microbial communities from a hyporheic zone in Columbia River, Washington, USA - GW-RW T4_30-Apr-14 NMDC pilot DOE Joint Genome Institute (JGI) 3300042755 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Engineered Artificial ecosystem Unclassified Sand microcosm Unclassified sand microcosm 46.37228379 -119.2717467 190310280 448653 409 153 688 250 SRX2838888 0.0 Metagenome 3300006101 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE15Jun09 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006101 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 262704580 687917 180 76 293 134 SRX2565204 Unrestricted 0.0 Metagenome 3300041825 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - A_35_wk_5 DOE Joint Genome Institute (JGI) 3300041825 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9785 -106.974 80750770 263340 228 6 443 16 SRX14809809 Unrestricted 6.6 Metagenome 3300029624 *Microbiome Permanent Draft Microbial communities from the coastal microbial mats of Shark Bay, Australia Marine microbial communities from the coastal microbial mats of Shark Bay, Australia - stromatolite Massachusetts Institute of Technology 3300029624 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy No Yes momper@usc.edu Lily Momper No Environmental Aquatic Coastal Marine Unclassified marine -26.16 114.25 488946193 464749 68 1 49 1 0.0 Metagenome 3300023029 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-297 DOE Joint Genome Institute (JGI) 3300023029 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Unclassified Plant litter Unclassified leaf litter 40.2526 -123.026 79727771 149794 30 28 38 49 SRX4392432 Unrestricted 49.8 Metagenome 3300002137 *Microbiome Permanent Draft Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t6BS1 (107f) 3300002137 Metagenome Analysis released by JGI data releasing policy No Yes daniel.herlemann@io-warnemuende.de, daniel.herlemann@emu.ee Daniel Herlemann, Daniel P. Herlemann No Environmental Aquatic Unclassified Unclassified Unclassified Marine 57.305 20.0745 198157479 852359 206 23 420 38 0.0 Metagenome 3300048549 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_201209.NP1 DOE Joint Genome Institute (JGI) 3300048549 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 811585174 1699555 525 117 776 182 Unrestricted 11.18 Metagenome 3300017818 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly) DOE Joint Genome Institute (JGI) 3300017818 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 1893146635 4153941 1464 96 2394 171 SRX3780730 Unrestricted 16.21 Metagenome 3300048616 *Microbiome Permanent Draft Soil microbial communities from uranium-contaminated sites across the Upper Colorado River Basin region Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT_PTT1_OCT19_120cm DOE Joint Genome Institute (JGI) 3300048616 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Terrestrial Contaminated Soil Uranium contaminated soil 42.9883 -108.4003 443305666 970241 531 5 924 11 Restricted 11.51 Metagenome 3300014963 *Microbiome Permanent Draft Human fecal microbial communities from elderly subjects during probiotic consumption in Boston, USA Human fecal microbial communities from elderly subjects during probiotic consumption in Boston, USA - meta_42827d56 University of Maryland School of Medicine 3300014963 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 42.3601 -71.0589 530841704 768619 314 1 527 0 0.0 Metagenome 3300008585 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 765034022 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008585 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 77772233 90981 63 0 110 1 0.0 Metagenome 3300070442 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Northern Great Plains Research Laboratory, North Dakota, USA - NOGP_012-M-20200706-COMP-DNA1 3300070442 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 31139127 89737 100 6 188 11 0.0 Metagenome 3300070904 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_071-O-20180918-COMP-DNA1 3300070904 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 170150508 370383 97 14 187 25 0.0 Metagenome 3300025856 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC097_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025856 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 33.8 -118.28 741389199 1395754 530 5 788 6 SRX2338770 Unrestricted 0.0 Metagenome 3300024500 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_0h DOE Joint Genome Institute (JGI) 3300024500 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 164869204 384588 195 23 301 38 SRX4547318 Unrestricted 12.47 Metagenome 3300049739 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_130807.NP2 DOE Joint Genome Institute (JGI) 3300049739 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 1132391305 2439830 636 140 1010 220 Unrestricted 14.95 Metagenome 3300011506 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway plastic -P01406 Weill Cornell Medical College 3300011506 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Plastic surface city subway plastic 40.84 -73.91 21122985 29532 14 0 13 0 SRX823346 0.0 Metagenome 3300009007 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom T8 (1) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2) Shell Corporation 3300009007 Metagenome Analysis IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 54.971158 -1.703654 128900799 420654 185 2 298 0 0.0 Metagenome 3300027723 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027723 Metagenome Analysis spades v. 3.11.1 Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0991 -99.1044 613932862 1317721 499 8 939 14 SRX2753782 Unrestricted 0.0 Metagenome 3300037363 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 10-14 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037363 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 487824659 1165905 407 8 662 6 SRX4415324, SRX8127993 Unrestricted 0.0 Metagenome 3300012432 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100789 University of Pennsylvania 3300012432 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8812053 15291 4 2 13 4 SRX756065 0.0 Metagenome 3300006836 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 861967750 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006836 Metagenome Analysis SPADES v3.7.0 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 55131681 210083 77 5 90 11 0.0 Metagenome 3300014043 *Microbiome Permanent Draft Ruminant gut microbial communities from various locations in USA Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1248 University of Missouri 3300014043 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen 41.314168 -105.584589 294134892 565315 151 4 305 8 SRX331733 0.0 Metagenome 3300036842 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_Dec_plot3_rep1 DOE Joint Genome Institute (JGI) 3300036842 Metagenome Analysis metaspades v. 3.13.0 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6591 -80.6279 1331247959 2250493 521 8 935 8 SRX8181458 Unrestricted 13.53 Metagenome 3300070224 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_037-M-20200804-COMP-DNA1 3300070224 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 11406024 36004 47 3 78 14 0.0 Metagenome 3300026820 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO21-A (SPAdes) DOE Joint Genome Institute (JGI) 3300026820 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 32821786 106770 88 1 159 7 SRX2575482 Unrestricted 0.0 Metagenome 2028778002 *Microbiome Permanent Draft Marine surface waters microbial communities from Blanes Bay, Balearic Sea Marine surface waters microbial communities from Blanes Bay, Balearic Sea - 299 Washington University in St. Louis 2028778002 Metagenome Analysis released per JGI data release policy No Yes Alon Philosof / Oded Beja No Environmental Aquatic Oceanic Marine Photic zone Marine surface waters 41.670501 2.800182 7368735 7318 333 0 15 0 0.0 Metagenome 7000000356 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human attached/keratinized gingiva microbial communities from NIH, USA - visit 2, subject 763961826 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000356 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Attached/Keratinized gingiva Human 39.0042816 -77.1012173 12089589 26116 0 0 0 0 0.0 Metagenome 3300031959 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24 DOE Joint Genome Institute (JGI) 3300031959 Metagenome Analysis spades v. 3.12.0 Yes Yes campbell87@llnl.gov; pettridge2@llnl.gov Ashley Campbell; Jennifer Pett-Ridge No Environmental Terrestrial Tropical forest Soil Bulk soil soil 18.321 -65.8172 968631565 2373645 402 8 675 13 SRX5818635 Unrestricted 11.12 Metagenome 3300005365 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG DOE Joint Genome Institute (JGI) 3300005365 Metagenome Analysis MEGAHIT v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 42.3948 -85.3738 4265998722 11962745 2945 216 5281 391 SRX2740820 Unrestricted 0.0 Metagenome 3300049225 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_150211.NP2 DOE Joint Genome Institute (JGI) 3300049225 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 976418769 2085997 668 84 1042 147 Unrestricted 12.96 Metagenome 3300043150 *Microbiome Permanent Draft Soil microbial communities from Nachusa Grasslands, Illinois, United States Soil microbial communities from Nachusa Grasslands, Illinois, United States - CCW_050217 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043150 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes wswingley@niu.edu Wesley Swingley No Environmental Terrestrial Grasslands Soil Unclassified soil 41.9035 -89.3341 25701446 75189 102 15 183 27 SRX9381656 Unrestricted 40.92 Metagenome 3300042568 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2017-rr0682 DOE Joint Genome Institute (JGI) 3300042568 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 991342460 1543605 395 101 547 150 Unrestricted 15.92 Metagenome 3300040971 *Microbiome Permanent Draft Oil sand and coal bed microbial communities from various locations Biofilm microbial communities from Alberta, Canada - Encana_pipeline University of Calgary 3300040971 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Built environment Unclassified Oil refinery Unclassified Biofilm 55.453 -110.32 469173400 655691 300 0 361 0 0.0 Metagenome 3300005559 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_09_30cm DOE Joint Genome Institute (JGI) 3300005559 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2696906490 7769052 2540 61 4341 92 SRX2728093 Unrestricted 0.0 Metagenome 3300040736 *Microbiome Permanent Draft Metagenomes of anaerobic enrichment cultures that dechlorinate hexachlorocyclohexane isomers Lab-enriched soil microbial communities from a contaminated agricultural site, Guadeloupe, France - GammaHCH MSP Beijing Genomics Institute (BGI) 3300040736 Metagenome Analysis spades v. 3.12.0 Yes Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Environmental Terrestrial Unclassified Soil Contaminated soil 16.249 -61.565 574130157 1332451 180 4 449 4 0.0 Metagenome 3300042515 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Aug2015-rr0543 DOE Joint Genome Institute (JGI) 3300042515 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1064476711 1661120 366 48 499 92 Unrestricted 16.07 Metagenome 3300011445 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2 DOE Joint Genome Institute (JGI) 3300011445 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8897 -106.908 793227838 1702741 563 38 993 47 SRX3539193 Unrestricted 0.0 Metagenome 3300005318 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila falleni female 2 gut Cornell University 3300005318 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy No Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila falleni female adult gut 43.025606 -77.572811 138921091 320305 42 9 86 12 0.0 Metagenome 3300014806 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS66_0 University of Hohenheim 3300014806 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 151373636 233949 91 0 134 0 0.0 Metagenome 3300049905 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Hydrothermal vent plume viral communities from North Pacific Ocean - CTD009 v DOE Joint Genome Institute (JGI) 3300049905 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 9.839 -104.2909 124333907 288553 40 1 78 4 Restricted 222.29 Metagenome 7000000648 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 159753524 replicate 2 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000648 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 2122121 2226 0 0 0 0 0.0 Metagenome 3300014554 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_106 The George Washington University (GWU) 3300014554 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 106703379 166443 99 2 158 8 SRX656246 0.0 Metagenome 3300045174 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_3_A DOE Joint Genome Institute (JGI) 3300045174 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 185666573 227765 111 1 137 2 Unrestricted 89.96 Metagenome 3300007593 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1563A-3 DOE Joint Genome Institute (JGI) 3300007593 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2103 -123.7517 373454826 751639 354 55 570 87 SRX2753760 Unrestricted 0.0 Metagenome 3300064930 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 739 in Chauvin, Alberta, Canada - S00JY_0698 Microbiome Insights 3300064930 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.4340656 -110.170687 14140272 20369 22 3 42 3 0.0 Metagenome 3300042172 *Microbiome Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Seawater microbial communities from Algarve, Portugal - SW02 v2 Molecular Research LP (MR DNA) 3300042172 Metagenome Analysis Metawrap workflow v. 1.0.8 released by JGI data releasing policy Yes Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Environmental Aquatic Oceanic Marine Unclassified seawater 36.979778 -7.989111 58928023 77021 20 2 31 4 0.0 Metagenome 3300021108 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion v5 DOE Joint Genome Institute (JGI) 3300021108 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 166816830 357298 98 81 155 125 Unrestricted 0.0 Metagenome 3300040246 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_003-M-20160725-COMP-DNA1 Battelle Memorial Institute 3300040246 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 7048330 21297 54 2 91 1 0.0 Metagenome 2119805001 *Microbiome Permanent Draft Achromatium oxaliferum microbial communities from Northeastern Germany Achromatium SCM1 newbler DOE Joint Genome Institute (JGI) 2119805001 Metagenome Analysis newbler released per Simon -- IMGSUPP2949 No Yes mallgaier@igb-berlin.de Martin Allgaier No Environmental Aquatic Unclassified Freshwater Unclassified Achromatium oxaliferum 53.151553 13.026172 44099556 108581 8 0 21 0 0.0 Metagenome 3300056898 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River mesohaline marsh, Georgia, USA - M1L_30_32 DOE Joint Genome Institute (JGI) 3300056898 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 31.0036317 -81.5659748 569988803 980617 386 0 698 1 Unrestricted 13.12 Metagenome 3300030103 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_102 - TARA_R100001480 CEA Genoscope 3300030103 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -5.261 -85.1678 246240935 507420 37 3 53 5 0.0 Metagenome 3300041097 *Microbiome Permanent Draft Metagenomes from benzene-degrading nitrate-reducing cultures Lab enriched sediment microbial communities from hydrocarbon-contaminated retail site, Toronto, Canada - Cart_NO3_cons19 MSP Beijing Genomics Institute (BGI) 3300041097 Metagenome Analysis spades v. 3.12.0 Yes Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Engineered Lab enrichment Anaerobic media Defined media Unclassified sediment 43.6535 -79.3839 223296103 502729 63 0 139 0 0.0 Metagenome 3300044878 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - DOSP13-9-18-19 DOE Joint Genome Institute (JGI) 3300044878 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.038 -120.6897 697649333 1675071 565 76 964 103 Restricted 10.46 Metagenome 3300006295 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160603188 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006295 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 67450851 119464 79 0 135 0 0.0 Metagenome 3300035376 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada -18E_3a_14_7 mgh University of Alberta 3300035376 Metagenome Analysis megahit v. 1.1.1 released by JGI data releasing policy Yes Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified wastewater 56.7292 -111.3885 46509230 59841 20 0 35 0 0.0 Metagenome 3300013574 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - seawater enrichment SCG53 University of British Columbia 3300013574 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 2911025 5288 2 0 4 0 SRX143162 0.0 Metagenome 3300023045 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-281 DOE Joint Genome Institute (JGI) 3300023045 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Unclassified Plant litter Unclassified leaf litter 40.2198 -122.9842 117803868 219397 42 32 51 52 SRX4392086 Unrestricted 42.85 Metagenome 3300042626 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A18 University of California, Davis 3300042626 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 233207057 650631 325 3 564 6 0.0 Metagenome 3300030311 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from adenoma patient in Toronto, Canada - MG100195 University of Michigan 3300030311 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 43.65 -79.38 23018020 37320 34 0 51 0 0.0 Metagenome 3300012351 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG DOE Joint Genome Institute (JGI) 3300012351 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.5673 -123.4758 1974477468 4030440 1267 56 2196 108 SRX3372902 Unrestricted 0.0 Metagenome 3300027681 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027681 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 467520108 1103325 372 58 662 93 SRX2021671, SRX1986454, SRX1986453 Unrestricted 0.0 Metagenome 3300049852 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_A_2_control DOE Joint Genome Institute (JGI) 3300049852 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 21431974 54200 107 6 214 9 Unrestricted 0.0 Metagenome 3300011429 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2 DOE Joint Genome Institute (JGI) 3300011429 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9777 -107.003 431728972 958078 357 20 732 39 SRX3539348 Unrestricted 0.0 Metagenome 3300011854 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -PQiagenBeadWash928-2 Weill Cornell Medical College 3300011854 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.76 -73.96 44737456 69006 12 4 2 6 SRX823468 0.0 Metagenome 2166559018 *Microbiome Permanent Draft Microbial communities from the Atlantic Ocean and human feces from France, grouped together for a comparative study Marine microbial communities from the Atlantic Ocean, for comparison studies - Ocean6 (GOS4441574) 454 Life Sciences 2166559018 Metagenome Analysis released per JGI data release policy No Yes tom.delmont@ec-lyon.fr Delmont No Environmental Aquatic Oceanic Marine Unclassified Environmental and host-associated 156771884 302059 218 11 411 10 0.0 Metagenome 3300025504 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 (SPAdes) DOE Joint Genome Institute (JGI) 3300025504 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 234727299 543204 163 27 259 36 SRX1987651 Unrestricted 0.0 Metagenome 3300049249 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA10 DOE Joint Genome Institute (JGI) 3300049249 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 418661265 987332 413 11 709 6 Unrestricted 7.88 Metagenome 3300029912 *Microbiome Permanent Draft Cryoconite microbial communities around the Greenland ice sheet Cryoconite microbial communities from ice sheet in Kangerlussuaq, Greenland - KAN_P-A3a DMAC, Technical University of Denmark 3300029912 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Environmental Aquatic Ice Freshwater Cryoconite Cryconite 67.09 -50.0 295863540 558350 134 5 206 14 SRX2579862 0.0 Metagenome 3300026128 *Microbiome Permanent Draft Utah desert microbiome from environmental samples near Hanksville, Utah, USA Rock biofilm microbial communities from Utah desert near Hanksville, Utah, USA - S2.3 McGill University 3300026128 Metagenome Analysis canu v. 1.7 released by Catherine Maggiori No Yes catherine.maggiori@gmail.com Catherine Maggiori No Environmental Terrestrial Unclassified Soil Desert Rock biofilm 38.41598673 -110.78408069 1069044 1675 0 0 0 0 0.0 Metagenome 3300001995 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA Switchgrass rhizosphere and bulk soil microbial communities from Knoxville, Tennessee, USA - plot19-3 3300001995 Metagenome Analysis released by JGI data releasing policy No Yes Archana Chauhan, Gary S. Sayler No Environmental Terrestrial Clay Soil Grasslands Switchgrass rhizosphere and bulk soil 35.9728 -83.9422 1088001 6285 41 3 102 1 0.0 Metagenome 3300040590 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Moab, Southern Rockies & Colorado Plateau, UT, USA - MOAB_044-M-20170523-COMP-DNA1 Battelle Memorial Institute 3300040590 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.24833 -109.38827 1847838 5850 25 0 56 2 0.0 Metagenome 3300021436 *Microbiome Permanent Draft Filtered air microbial and viral communities from Madrid, Spain Filtered air microbial and viral communities from Madrid, Spain - sample ALO5 Autonomous University of Barcelona 3300021436 Metagenome Analysis SPAdes 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Air Unclassified Outdoor Air Unclassified filtered air 40.4 -3.7 91974573 172612 10 7 12 14 0.0 Metagenome 3300039081 *Microbiome Permanent Draft Activated sludge microbial communities from various WWTPs in Denmark Activated sludge microbial communities from WWTP in Aalborg West, Denmark - AAW-4-2010 Aalborg University 3300039081 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified Activated sludge 57.04951 9.864788 117012262 233150 42 3 77 2 0.0 Metagenome 3300007119 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763860675 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007119 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 174229197 271323 221 0 299 0 0.0 Metagenome 3300028500 *Microbiome Permanent Draft Glacial sediment microbial communities from Passu Glacier, Karakoram range Hunza valley, Pakistan Glacial sediment microbial communities from Passu Glacier, Karakoram range Hunza valley, Pakistan - PS PS University of Bristol 3300028500 Metagenome Analysis SPAdes v. 3.11.1 released by JGI data releasing policy No Yes mr14311@my.bristol.ac.uk Muhammad Rafiq No Environmental Aquatic Ice Freshwater Glacier Glacial sediment 36.4698 74.7732 7 192849316 212241 21 1 29 1 0.0 Metagenome 3300044471 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - DOSP9-9-18-19 DOE Joint Genome Institute (JGI) 3300044471 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.0108 -120.6825 474621102 1128227 505 40 886 71 Restricted 9.35 Metagenome 3300014714 *Microbiome Permanent Draft Human fecal microbial commmunities from Fecal Microbiota Transplantation (FMT) for ulcerative colitis - University of Washington Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P081B1 University of Washington 3300014714 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26288277 Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 786425 2169 4 2 9 3 SRX1131757 0.0 Metagenome 3300043260 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Desert spring benthic microbial communities from Nevada, United States - South Indian Spring (SIS_S4) (coverage test 16Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043260 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified Desert spring 36.4265 -116.3098 7.37 675538000 1005893 308 17 498 30 SRX9167622 Unrestricted 53.42 Metagenome 3300025123 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Groundwater microbial communities from Cold Creek, Nevada to study Microbial Dark Matter (Phase II) - Cold Creek Source (SPAdes) (version 3) DOE Joint Genome Institute (JGI) 3300025123 Metagenome Analysis spades v. 3.11.1 Yes Yes rstepanauskas@bigelow.org; duane.moser@dri.edu Ramunas Stepanauskas; Duane Moser No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 36.41 -115.74 495910232 1070400 495 97 800 136 SRX2948574 Unrestricted 0.0 Metagenome 3300044616 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME05Oct2018-rr0984 DOE Joint Genome Institute (JGI) 3300044616 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 868484152 1316789 351 52 505 91 Unrestricted 16.85 Metagenome 3300044549 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - KW_CSTR_120 DOE Joint Genome Institute (JGI) 3300044549 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 124843830 172359 129 3 143 3 SRX12655888 Unrestricted 120.85 Metagenome 3300047469 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere DOE Joint Genome Institute (JGI) 3300047469 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5879 -123.1929 549654104 804447 183 55 262 74 Unrestricted 29.29 Metagenome 3300026812 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300026812 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 29692333 99331 97 0 161 2 SRX1990510 Unrestricted 0.0 Metagenome 3300043451 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Northeast Branch Anacostia River, Riverdale, Maryland, USA - nebranchanacostia_2019_sw_WHONDRS-S19S_0081 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300043451 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9603 -76.9259 451726560 751920 267 108 395 154 Unrestricted 21.3 Metagenome 3300018043 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10 DOE Joint Genome Institute (JGI) 3300018043 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 1521702977 3016105 806 49 1342 92 SRX3960717 Unrestricted 6.58 Metagenome 3300071070 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_049-M-20190730-COMP-DNA1 3300071070 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 9166721 28961 89 5 149 10 0.0 Metagenome 3300041849 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - TR_32_wk_2 DOE Joint Genome Institute (JGI) 3300041849 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.9707 -107.059 118399248 363002 252 21 487 35 SRX14808335 Unrestricted 7.17 Metagenome 3300006642 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D DOE Joint Genome Institute (JGI) 3300006642 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.299 -156.61 1710724714 5190695 1407 50 2604 111 SRX2899913 Unrestricted 0.0 Metagenome 3300001885 *Microbiome Permanent Draft Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils (2) Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils - Sample14 3300001885 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Terrestrial Unclassified Soil Grasslands Grassland soil 23.850674 69.734802 0 0 0 0 0 0 0.0 Metagenome 3300003377 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08.2A5-11 DOE Joint Genome Institute (JGI) 3300003377 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 402282 1319 14 1 50 3 SRX2576247 Unrestricted 0.0 Metagenome 3300027807 *Microbiome Permanent Draft Host-associated microbial communities from peat moss Sphagnum species from Minnesota, USA Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027807 Metagenome Analysis spades v. 3.11.1 Yes Yes joel.kostka@biology.gatech.edu Joel Kostka No Host-associated Plants Unclassified Peat moss Unclassified Host-associated 47.5028 -93.4828 1346775198 2128057 408 121 526 175 SRX3006920 Unrestricted 0.0 Metagenome 3300047487 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Lake Yojoa, Honduras - Yojoa_06_2019_E_epi (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300047487 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Lake Freshwater Unclassified Freshwater 14.8744 -87.9835 482153988 830964 254 47 369 96 Unrestricted 0.0 Metagenome 3300039197 *Microbiome Draft Sediment Wemotaci 2017 Metagenomes Freshwater sediment microbial communities from the Saint-Maurice River, Canada - WEM-1_at_2-3_cm Genome Quebec 3300039197 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes lise.milleraferriz@gmail.com Lise Millera Ferriz No Environmental Aquatic River Freshwater Sediment Freshwater sediment 47.89896 -73.80984 424517755 1119839 642 50 1334 83 0.0 Metagenome 3300070577 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_006-M-20190715-COMP-DNA1 Battelle Memorial Institute 3300070577 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 46.254613 -89.512657 5.36-5.52 7955191 26579 33 5 72 9 0.0 Metagenome 3300046358 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_26 DOE Joint Genome Institute (JGI) 3300046358 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9703 -106.997 84922151 265396 553 13 1093 16 Restricted 0.0 Metagenome 3300037493 *Microbiome Permanent Draft Sediment microbial communities from various lakes in Switzerland Sediment microbial communities from Lake Baldegg, Lucerne, Switzerland - LB_38 DOE Joint Genome Institute (JGI) 3300037493 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mark.lever@usys.ethz.ch Mark Alexander Lever No Environmental Aquatic Lake Freshwater Sediment sediment 47.1988 8.2602 642557529 1112195 263 4 427 6 SRX9147843 Unrestricted 15.71 Metagenome 3300020716 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion DOE Joint Genome Institute (JGI) 3300020716 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 96852145 219524 95 38 149 54 Unrestricted 0.0 Metagenome 3300042661 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A28 University of California, Davis 3300042661 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 247670046 679977 321 4 582 5 0.0 Metagenome 3300024259 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_200_MG DOE Joint Genome Institute (JGI) 3300024259 Metagenome Analysis spades v. 3.11.1 Yes Yes sean.crowe@ubc.ca; shallam@interchange.ubc.ca Sean Crowe; Steven Hallam No Environmental Aquatic Inlet Marine Unclassified seawater 48.5847 -123.5008 963628876 1659651 666 4 994 7 SRX4483165 Unrestricted 30.75 Metagenome 3300000695 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 74 DOE Joint Genome Institute (JGI) 3300000695 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 8332006 24073 36 0 62 0 SRX4341353 Unrestricted 0.0 Metagenome 3300049183 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - D21_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049183 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 448046084 992213 521 11 907 12 Unrestricted 0.0 Metagenome 3300069626 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_001-O-20170612-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069626 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 47600293 140403 66 4 142 9 0.0 Metagenome 3300037274 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site2_nosalt_MVII_2 DOE Joint Genome Institute (JGI) 3300037274 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Salt marsh microbial mat 20.7452 58.6625 390918291 781336 297 2 486 3 SRX8853765 Unrestricted 8.58 Metagenome 3300054085 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10 re-annotation DOE Joint Genome Institute (JGI) 3300054085 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Peatland 47.5028 -93.4828 1152796741 2284648 595 49 960 82 SRX3959979 0.0 Metagenome 3300030027 *Microbiome Permanent Draft Marine Fish Microbial Metagenomes Coastal fish gut microbial communities from Southern California Bight, Pacific Ocean - AC4B University of California, San Diego, Scripps Institute of Oceanography 3300030027 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton No Host-associated Fish Intestine Digestive system Unclassified fish gut 32.86715 -117.2573472 391648667 436038 0 13 1 8 0.0 Metagenome 7000000541 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763982056 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000541 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 59787548 119708 0 0 0 0 0.0 Metagenome 3300014292 *Microbiome Permanent Draft Human oral microbial communities of schizophrenia patients from Maryland, USA Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_209 The George Washington University (GWU) 3300014292 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Pharynx/Throat Digestive system Oropharynx Human oral 101561720 178600 110 4 165 8 SRX656255 0.0 Metagenome 3300046519 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere DOE Joint Genome Institute (JGI) 3300046519 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 44.5876 -123.1936 680865491 1052247 226 34 349 62 Unrestricted 22.9 Metagenome 3300034820 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2 DOE Joint Genome Institute (JGI) 3300034820 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 39.6589 -79.9058 607990091 1710475 778 71 1396 130 SRX8289785 Unrestricted 6.39 Metagenome 3300013701 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00880 Weill Cornell Medical College 3300013701 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.71 -73.82 18982222 27741 10 0 16 0 SRX822845 0.0 Metagenome 3300023279 *Microbiome Permanent Draft Sediment microbial communities from Stefan Fjord, Tortel, Patagonia, Chile Sediment microbial communities from Stefan Fjord, Tortel, Patagonia, Chile - Sample 7 University of Bristol 3300023279 Metagenome Analysis SPADES v. 3.11.1 released by JGI data releasing policy No Yes maisie.nash@bristol.ac.uk Maisie Nash No Environmental Aquatic Unclassified Sediment Unclassified sediment -47.945933 -73.763983 7.714 95362614 116710 12 3 6 2 0.0 Metagenome 3300009977 *Microbiome Permanent Draft Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_91 metaG DOE Joint Genome Institute (JGI) 3300009977 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes esinger@lbl.gov; twoyke@lbl.gov Esther Singer; Tanja Woyke No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass associated 30.387 -97.7301 34786384 63200 31 122 42 183 SRX2524203 Unrestricted 0.0 Metagenome 3300016744 *Microbiome Draft Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA Microbial communities from bioreactor (seeded with anoxic lake sediment) at LBNL, California, USA - Biofuel metagenome 1 DOE Joint Genome Institute (JGI) 3300016744 Metagenome Analysis Yes Yes hrbeller@lbl.gov Harry Beller Yes 29556105 Engineered Bioreactor Unclassified Anaerobic Unclassified Bioreactor 37.8754404 -122.2477251 262171514 565602 129 3 187 3 Unrestricted 0.0 Metagenome 3300044984 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater bacterial communities from Lake Mendota, Wisconsin, United States - ME_2020-07-24_23.5m_Bacteria_A DOE Joint Genome Institute (JGI) 3300044984 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 886288456 1376260 331 25 495 39 Unrestricted 19.21 Metagenome 3300027470 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK03-D (SPAdes) DOE Joint Genome Institute (JGI) 3300027470 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 14986323 51385 52 1 119 5 SRX2575246 Unrestricted 0.0 Metagenome 7000000479 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763435843 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000479 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 88161634 160533 0 0 0 0 0.0 Metagenome 3300070790 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountains, Colorado, USA - RMNP_004-O-20200629-COMP-DNA1 3300070790 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 27231126 77204 73 15 134 27 0.0 Metagenome 3300022535 *Microbiome Permanent Draft Abyssal plain sediment microbial communities from Eastern Gulf of Mexico, Atlantic Ocean Abyssal plain sediment microbial communities from Eastern Gulf of Mexico, Atlantic Ocean - EGM026 University of Calgary 3300022535 Metagenome Analysis Megahit v. 1.1.1 released by JGI data releasing policy Yes Yes dongxiyang@tio.org.cn Xiyang DONG No Environmental Aquatic Sediment Marine Unclassified Abyssal plain sediment 25.3043 -90.0659 177411826 324228 155 12 315 16 0.0 Metagenome 3300031839 *Microbiome Finished The variation of viral communities during algal boom from the coastal of Qingdao, China Marine viral communities from the Yellow sea, Qingdao, China - XG0630 Beijing Novogene Bioinformatics Technology Co., Ltd 3300031839 Metagenome Analysis SPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes foodyqw_12@163.com Yang Qingwei No Environmental Aquatic Coastal Marine Unclassified marine 36.0767 120.3087 338190524 514086 101 5 135 6 0.0 Metagenome 3300005200 *Microbiome Permanent Draft Termite gut microbial communities from Australia Nasutitermes gut metagenome University of Queensland 3300005200 Metagenome Analysis CLC assembly released per JGI data release policy No Yes nurdyana.abdulrahman@uqconnect.edu.au, nurdyana.abdul.rahman@sgh.com.sg Abdul Rahman, Nurdyana Abdul Rahman No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut -27.45 152.04 639263486 1137468 99 4 155 1 0.0 Metagenome 3300008620 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 763536994 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008620 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 111231348 145498 93 0 144 0 0.0 Metagenome 3300028169 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_80m DOE Joint Genome Institute (JGI) 3300028169 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 395729276 782510 512 1 793 4 SRX5244744 Unrestricted 16.29 Metagenome 3300006956 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Dobu ""bubble"", co12ds" University of New South Wales 3300006956 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.wesbter@aims.gov.au, n.webster@aims.gov.au Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Coelcarteria singaporensis (marine sponge) -9.73665 150.867667 9655140 22577 7 2 14 6 0.0 Metagenome 3300017637 *Microbiome Permanent Draft Inland Lake Microcystis Ecotyping Project Freshwater microbial communities from inland lakes in southern Michigan, USA - G11-01 University of Michigan 3300017637 Metagenome Analysis idba-ud released by JGI data releasing policy No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.39651 -85.40936 43995080 59487 23 2 19 2 0.0 Metagenome 3300010215 *Microbiome Permanent Draft Phototrophic microbial communities Intertidal zone phototrophic microbial communities from Little Sippewissett Salt Marsh, Woods Hole, MA - SCQ17a Marine Biological Laboratory 3300010215 Metagenome Analysis CLC released per JGI data release policy No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Intertidal zone Marine Salt marsh salt marsh 41.5758508 -70.635807 106955215 124482 37 2 63 2 0.0 Metagenome 3300002051 *Microbiome Permanent Draft Soil microbial communities from Amlakhadi River, Gujarat, India Soil microbial communities from Amlakhadi River, Gujarat, India - Sample 5 3300002051 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Aquatic River Freshwater Sediment Soil 21.636337 72.989458 0 0 0 0 0 0 0.0 Metagenome 3300032255 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month chalcopyrite DOE Joint Genome Institute (JGI) 3300032255 Metagenome Analysis spades v. 3.13.0 Yes Yes jbeam@bigelow.org; demerson@bigelow.org Jake Beam; David Emerson No Environmental Aquatic Coastal Marine Sediment microbial mat 43.8603 -69.5781 461360152 765047 271 22 366 37 SRX5822401 Unrestricted 48.01 Metagenome 3300025936 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025936 Metagenome Analysis spades v. 3.11.1 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Switchgrass rhizosphere 42.3948 -85.3738 3434819018 8146781 1354 114 2682 179 SRX2740818 Unrestricted 0.0 Metagenome 3300015209 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G3B, Proglacial river margin, by glacier terminus) University of Bristol 3300015209 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.152081 -50.048593 6.7 395690349 849572 258 2 399 4 0.0 Metagenome 3300025771 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025771 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 516406466 1135141 306 119 472 161 SRX2862380 Unrestricted 0.0 Metagenome 3300033613 *Microbiome Permanent Draft Metagenomic SGS 2x251 Cornfield soil microbial communities from Madison, WI, USA - CF7 Illumina 3300033613 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Agricultural land Soil 43.056543 -89.477477 532905497 1992665 249 12 606 23 0.0 Metagenome 3300010268 *Microbiome Permanent Draft Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 8_30_10_142_A2 metaG DOE Joint Genome Institute (JGI) 3300010268 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes Steve.Brown@lanzatech.com Steven Brown Yes 30202438 Engineered Bioreactor Anaerobic Semi-continuous Digestate Switchgrass degrading 43.726 -72.1429 241672141 388702 471 1 672 7 SRX3290035 Unrestricted 0.0 Metagenome 3300005920 *Microbiome Permanent Draft Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.2 DOE Joint Genome Institute (JGI) 3300005920 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jeremy.rich@maine.edu Jeremy Rich No Environmental Aquatic Coastal Marine Sediment Marine sediment 1558638933 4549384 1926 33 2962 73 SRX2837944 Unrestricted 0.0 Metagenome 3300053153 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere DOE Joint Genome Institute (JGI) 3300053153 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.587562 -123.193264 957134633 1734954 415 107 554 167 Unrestricted 13.61 Metagenome 3300031520 *Microbiome Permanent Draft Rock endolithic microbial communities from Victoria Land, Antarctica Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord DOE Joint Genome Institute (JGI) 3300031520 Metagenome Analysis spades v. 3.12.0 Yes Yes selbmann@unitus.it Laura Selbmann Yes 32139564 Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock -77.9 161.57 1094441555 1652791 398 51 483 64 SRX5225239 Unrestricted 35.14 Metagenome 3300021542 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Upa-Upasina ""control"", cg17ic 200bp no Eukaryotes last" University of New South Wales 3300021542 Metagenome Analysis IDBA-UD released by Emmanuelle BOTTE Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Cinachyra sp. (marine sponge) -9.828217 150.820517 67351695 124578 44 1 81 3 0.0 Metagenome 3300049075 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - G1_B_BS (version 2) DOE Joint Genome Institute (JGI) 3300049075 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 196965756 445073 474 10 1043 9 Unrestricted 0.0 Metagenome 3300029719 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37181R1 Beijing Genomics Institute (BGI) 3300029719 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 276139458 359539 228 1 299 0 0.0 Metagenome 3300020556 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 03AUG2012 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020556 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 127995652 298808 124 10 212 16 SRX1989910 Unrestricted 0.0 Metagenome 3300025007 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG15_big_fil_post_rev_8/21/14_0.20 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025007 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 356611405 755929 520 8 845 21 SRX2725957 Unrestricted 0.0 Metagenome 3300013598 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100317 University of Pennsylvania 3300013598 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4850045 9191 11 2 22 0 SRX756340 0.0 Metagenome 3300039239 *Microbiome Permanent Draft Terrestrial cyanobacterial communities with co-occurring heterotrophs from various environments and locations Rexia erecta CAT4-SG4 and co-occurring heterotrophs from stone wall from Great Smoky National Park, Tennessee, United States - 20190605_46C DOE Joint Genome Institute (JGI) 3300039239 Metagenome Analysis metaspades v. 3.13.0 Yes Yes npietras@nmsu.edu Nicole Pietrasiak No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Stone wall 35.6414 -83.06 72923042 94756 32 2 26 0 SRX9404761 Unrestricted 217.77 Metagenome 3300023312 *Microbiome Permanent Draft Child gut microbiome Human gut microbial communities from healthy child feces in Northridge, California, USA -- CDI_12C University of California, Irvine 3300023312 Metagenome Analysis SPAdes v. 3.11.0 Release by PI request 11/13/2019 -Kadir No Yes kadir.galindo.150@my.csun.edu Kadir Galindo No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 34.2381 -118.5301 164649168 166172 12 0 23 0 0.0 Metagenome 3300031175 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #349 DOE Joint Genome Institute (JGI) 3300031175 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5596 77.8957 477542511 840095 190 163 320 301 SRX5650159 Unrestricted 11.55 Metagenome 3300005624 *Microbiome Draft Hot spring microbial communities from Yellowstone National Park, Wyoming, USA Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP2 Nymph Lake 10 v2 (version 3) DOE Joint Genome Institute (JGI) 3300005624 Metagenome Analysis pga released based on JGI ITS No Yes binskeep@montana.edu William Inskeep, William P. Inskeep Yes 23653623, 23720654 Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.7523206 -110.7253926 3.75 4164052 6956 3 0 4 0 Unrestricted 0.0 Metagenome 3300028091 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepA_0h DOE Joint Genome Institute (JGI) 3300028091 Metagenome Analysis spades v. 3.11.1 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 200088914 408689 177 10 272 18 SRX5245411 Unrestricted 10.52 Metagenome 3300002622 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3w-11 DOE Joint Genome Institute (JGI) 3300002622 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 190406 649 19 1 41 0 SRX1991144 Unrestricted 0.0 Metagenome 3300045198 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_4_E DOE Joint Genome Institute (JGI) 3300045198 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 186537491 223000 110 1 118 2 Unrestricted 79.65 Metagenome 3300009856 *Microbiome Permanent Draft Mycocepurus goeldii (Attini ant) fungus garden bacterial communities from Botucatu, Sao Paulo state, Brazil Mycocepurus goeldii (Attini ant) fungus garden bacterial communities from Botucatu, Sao Paulo state, Brazil Macrogen Inc 3300009856 Metagenome Analysis Megahit v1.0.6 released per JGI data release policy No Yes m.barcoto@hotmail.com Mariana de Oliveira Barcoto No Host-associated Microbial Unclassified Bacteria Unclassified Attini ant fugus garden -22.885833 -48.445 320980619 399598 163 0 231 0 0.0 Metagenome 3300040777 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Brackish water microbial mat communities from the Etang de Berre, Marignane, France - D28a Genopole Toulouse Midi-Pyrenees 3300040777 Metagenome Analysis megahit v. 1.11 released by Adrien Vigneron Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 43.4847 5.188 153892855 317083 160 21 303 32 0.0 Metagenome 3300014645 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01362 Weill Cornell Medical College 3300014645 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.68 -73.99 20236722 36886 19 4 24 3 SRX823302 0.0 Metagenome 3300000859 *Microbiome Permanent Draft Hot springs sediment microbial communities from Tengchong, China, analyzing PIRE metagenomes Hot spring sediment from Guminquan in Tengchong, China Stanford University 3300000859 Metagenome Analysis released per JGI data release policy Yes Yes brian.hedlund@unlv.edu Brian P. Hedlund, Brian Hedlund No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot springs sediment 24.950891 98.436367 9.3 11388121 16893 6 0 12 0 0.0 Metagenome 3300042809 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Lab enriched deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Halanaerobium induction NMDC pilot DOE Joint Genome Institute (JGI) 3300042809 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Deep subsurface 40.178 -81.073 2936957 3474 8 0 33 0 SRX2752458 0.0 Metagenome 3300022489 *Microbiome Permanent Draft Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain Human saliva microbial communities from oral cavities of healthy adults from Alicante, Spain - individual 16 Autonomous University of Barcelona 3300022489 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.38 -0.51 30886265 38153 22 0 37 0 0.0 Metagenome 3300029318 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289 CEA Genoscope 3300029318 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine 19.0393 64.4913 213583965 505244 10 5 27 8 0.0 Metagenome 3300006877 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 638754422 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006877 Metagenome Analysis SPADES v3.6.1 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 3580452 6277 4 0 3 0 0.0 Metagenome 3300029365 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 064_3_10_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029365 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 307276492 415719 339 3 418 4 0.0 Metagenome 3300030236 *Microbiome Permanent Draft Marine Fish Microbial Metagenomes Coastal Myxini gut microbial communities from Southern California Bight, Pacific Ocean - XES2A University of California, San Diego, Scripps Institute of Oceanography 3300030236 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu Jessica Blanton No Host-associated Fish Intestine Digestive system Unclassified fish gut 32.87051111 -117.2607611 25706302 41650 2 2 0 14 0.0 Metagenome 3300014057 *Microbiome Permanent Draft Ruminant gut microbial communities from various locations in USA Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1208 University of Missouri 3300014057 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen 41.314168 -105.584589 647724957 1215391 306 8 584 11 SRX331732 0.0 Metagenome 3300002176 *Microbiome Permanent Draft Marine microbial communities from oxygen minimum zone in the mesopelagic equatorial Pacific Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_5_50m DOE Joint Genome Institute (JGI) 3300002176 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes cdupont@jcvi.org Chris Dupont, Chris L. Dupont No Environmental Aquatic Oceanic Marine Unclassified Marine 0.0 -158.0 276313254 697677 280 8 472 14 SRX1990983 Unrestricted 0.0 Metagenome 3300061663 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0339 Microbiome Insights 3300061663 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 53.55389677 -114.2019652 534470723 733701 149 3 206 7 0.0 Metagenome 3300000242 *Microbiome Draft Marine microbial communities from chronically polluted sediments in four geographic locations Marine microbial communities from chronically polluted sediments in Tierra del Fuego: Site OR sample ARG 05_12.3m DOE Joint Genome Institute (JGI) 3300000242 Metagenome Analysis released based on JGI ITS Yes Yes hdionisi@cenpat.edu.ar Hebe Dionisi No Environmental Aquatic Intertidal zone Marine Estuary Marine -54.810872 -68.295525 273897218 717592 399 67 720 121 Unrestricted 0.0 Metagenome 3300029559 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai, China Human fecal microbial communities from Shanghai, China - P031V1 Beijing Genomics Institute (BGI) 3300029559 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2112312 121.4647709 169519335 222030 183 0 278 0 0.0 Metagenome 3300044680 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Soil microbial communities from peatland in Alberta, Canada - SB-12-sedgy 0-10 cm DOE Joint Genome Institute (JGI) 3300044680 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4549 -114.8842 891834921 1367519 274 14 450 30 Unrestricted 11.78 Metagenome 3300000111 *Microbiome Draft Shipworm microbial communities from Puget Sound, Washington USA, from multiple species of wood-boring bivalves (shipworms) Microbial communities from multiple species of Shipworm: Sample from Bankia setacea gill BSg1 DOE Joint Genome Institute (JGI) 3300000111 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes distel@oglf.org Daniel Distel, Dan Distel No Host-associated Mollusca Gills Respiratory system Extracellular Shipworm 47.85072 -122.33843 563042062 1350121 17 11 26 2 Unrestricted 0.0 Metagenome 3300051096 *Microbiome Permanent Draft Soil microbial communities from agricultural fields across the midwestern and eastern USA Soil microbial communities from an agricultural field in Leeds, Wisconsin, USA - 32_771_WI_DR_1m_c2_T1_16O DOE Joint Genome Institute (JGI) 3300051096 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 43.30485 -89.3309 2110964221 3065889 553 18 785 23 Restricted 15.48 Metagenome 3300014919 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 577_4M Beijing Genomics Institute (BGI) 3300014919 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 59216826 63139 33 0 42 0 ERX491228 0.0 Metagenome 3300048133 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Seawater microbial communities from Southern California Bight, CA, United States - Newport_SRmetag_151125.NP1 DOE Joint Genome Institute (JGI) 3300048133 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 649061251 1619205 679 101 1048 175 Unrestricted 9.83 Metagenome 3300023314 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L029-104C-1 DOE Joint Genome Institute (JGI) 3300023314 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 648945580 1410600 691 117 1070 199 SRX4917356 Unrestricted 9.45 Metagenome 3300056872 *Microbiome Permanent Draft Activated sludge and biomass microbial communities from various bioreactor in WWTP, Madison, WI, USA Activated sludge microbial communities from bioreactor in WWTP, Madison, WI, USA - RS_2021-01-27_SampleB (version 2) DOE Joint Genome Institute (JGI) 3300056872 Metagenome Analysis metaflye v. 2.9 released based on JGI ITS Yes Yes kmyers2@wisc.edu Kevin Myers No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated sludge 43.03331 -89.35633 132706199 166221 75 16 99 15 Unrestricted 0.0 Metagenome 3300047300 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Ing River, Chiang Rai, Thailand - ME080035 DOE Joint Genome Institute (JGI) 3300047300 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 19.6813 100.1978 499021167 1070515 285 18 446 19 Unrestricted 22.73 Metagenome 3300028455 *Microbiome Permanent Draft Endolithic Cyanobacteria Culture Enrichments Cultured Calcite endolithic microbial community from Valle de Luna, Atacama Desert, Chile - C-VL-3 Johns Hopkins Bayview Research CORES 3300028455 Metagenome Analysis metaSPAdes v. 3.10, metawrap v. 0.5 released by JGI data releasing policy No Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified calcite -23.8634 -69.1328 6279081 6719 2 0 4 0 0.0 Metagenome 3300026696 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN630 (SPAdes) DOE Joint Genome Institute (JGI) 3300026696 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 13659735 44776 60 3 102 2 SRX3311858 Unrestricted 0.0 Metagenome 3300037558 *Microbiome Permanent Draft Marine microbial and viral communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean Crustal fluids microbial communities from the Juan de Fuca Ridge flank of the Northeast Pacific Ocean - JdFR11_11 DOE Joint Genome Institute (JGI) 3300037558 Metagenome Analysis metaspades v. 3.13.0 Yes Yes rappe@hawaii.edu Michael Rappe No Environmental Aquatic Oceanic Marine Crustal Fluids crustal fluids 47.7583 -127.7622 1898399025 4224825 1243 530 2100 828 SRX9096402 Unrestricted 19.88 Metagenome 3300029137 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012075-46 Beijing Genomics Institute (BGI) 3300029137 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 118804893 141228 81 3 124 3 0.0 Metagenome 3300002624 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A2-11 DOE Joint Genome Institute (JGI) 3300002624 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 679729 2235 28 0 49 0 SRX1991138 Unrestricted 0.0 Metagenome 2084038016 *Microbiome Permanent Draft Soil microbial community from Hopland, California, USA, that is PCE polluted Soil microbial communities from Hopland, California, USA, that is PCE polluted - amended with lactate GATC-Biotech AG, Konstanz, Germany 2084038016 Metagenome Analysis released per JGI data release policy No Yes timothy.vogel@ec-lyon.fr Timothy M. Vogel, Timothy Vogel No Environmental Terrestrial Unclassified Soil Contaminated Soil 38.9727 -123.1145 6851318 19305 19 1 19 0 0.0 Metagenome 3300006768 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from Cariaco Basin, Caribbean Sea - 29_WHOI_OMZ DOE Joint Genome Institute (JGI) 3300006768 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 10.847 -65.114 47186465 102575 116 2 236 5 SRX2929476 Unrestricted 0.0 Metagenome 3300020689 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 03AUG2009 epilimnion DOE Joint Genome Institute (JGI) 3300020689 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.041 -89.686 59322386 126385 57 29 90 41 Unrestricted 0.0 Metagenome 3300042198 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Jordan River, Golan Heights, Israel - jordanrivershai6_2019_sw_WHONDRS-S19S_0058 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300042198 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 32.8993 35.6136 836422984 1091130 279 127 382 175 Unrestricted 32.37 Metagenome 3300025467 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Aug09 (SPAdes) DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300025467 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 221743388 443136 100 24 166 42 SRX2565943 Unrestricted 0.0 Metagenome 3300005622 *Microbiome Draft Freshwater microbial communities from Lake Vostok at Ice accretion Freshwater microbial communities from Lake Vostok at Ice accretion - 5G Core DOE Joint Genome Institute (JGI) 3300005622 Metagenome Analysis Unknown released based on JGI ITS No Yes phugenholtz@lbl.gov Phil Hugenholtz No Environmental Aquatic Ice Freshwater Ice accretions Freshwater -78.445169 106.870651 3625444 5878 3 0 3 0 Unrestricted 0.0 Metagenome 3300037319 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Ekho Lake #14 DOE Joint Genome Institute (JGI) 3300037319 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5235 78.2582 465739172 873177 312 114 473 210 SRX9173342 Unrestricted 16.33 Metagenome 3300050247 *Microbiome Permanent Draft Freshwater microbial communities from Yellowstone Lake, Wyoming, United States Freshwater microbial communities from Yellowstone Lake, Wyoming, United States - 2017-07-24-12.5m DOE Joint Genome Institute (JGI) 3300050247 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.412 -110.335 799184436 1190916 279 56 324 82 Restricted 23.13 Metagenome 3300029686 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37305R1 Beijing Genomics Institute (BGI) 3300029686 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 180124178 209964 139 0 202 1 0.0 Metagenome 3300071033 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_053-M-20190612-COMP-DNA1 3300071033 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 190928 658 7 0 12 1 0.0 Metagenome 3300045809 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_2_E DOE Joint Genome Institute (JGI) 3300045809 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 156304651 188302 95 3 111 3 Unrestricted 119.86 Metagenome 3300025489 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Mar_QV11C (SPAdes) DOE Joint Genome Institute (JGI) 3300025489 Metagenome Analysis spades v. 3.11.1 Yes Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 18286439 23943 24 0 26 0 SRX3321591 Unrestricted 0.0 Metagenome 3300000422 *Microbiome Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Marine sediment microbial community from La Parguera, Puerto Rico - BB Mangrove A Sediment DOE Joint Genome Institute (JGI) 3300000422 Metagenome Analysis released based on JGI ITS Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Saline Non-marine Saline and Alkaline Sediment Bioluminescent Bay 17.966667 -67.0 71866427 188469 129 66 267 106 Unrestricted 0.0 Metagenome 3300042353 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME24Apr2019-rf0788 DOE Joint Genome Institute (JGI) 3300042353 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 551825158 888225 237 83 323 124 Unrestricted 19.95 Metagenome 3300000303 *Microbiome Permanent Draft Chicken cecum microbial communities from Ireland CECUM_9-2 University College Cork 3300000303 Metagenome Analysis meta-velvet released per JGI data release policy Yes Yes simone.rampelli@unibo.it Simone Rampelli No Host-associated Birds Large intestine Digestive system Ceca Chicken Cecum 51.897783 -8.470613 80998730 177613 566 3 807 6 0.0 Metagenome 3300005176 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0927_12_20cm DOE Joint Genome Institute (JGI) 3300005176 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 2430356988 6650542 2157 50 3775 95 SRX2521026 Unrestricted 0.0 Metagenome 3300026143 *Microbiome Permanent Draft Anaerobic reactors microbiome study Activated sludge microbial communities from lab. scaled anaerobic digester in Belvaux, Luxembourg - ACS2-37 University of Luxembourg 3300026143 Metagenome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 49.506216 5.943617 292870361 337600 82 5 223 8 0.0 Metagenome 3300037086 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-1-X0 DOE Joint Genome Institute (JGI) 3300037086 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0468 571966279 1059906 386 0 660 0 SRX10078025 Unrestricted 8.74 Metagenome 3300070286 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Dead Lake, Alabama, USA - DELA_038-M-20190626-COMP-DNA1 3300070286 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 22004550 68118 88 6 187 25 0.0 Metagenome 3300027238 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1555C-3 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027238 Metagenome Analysis spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2024 -123.9409 93855540 201051 173 23 270 43 SRX2753736 Unrestricted 0.0 Metagenome 3300040815 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Estuary water microbial communities from Narragansett Bay, Rhode Island, USA E1_Amb_NB2 DOE Joint Genome Institute (JGI) 3300040815 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.6925 -71.4244 627987801 962399 342 106 440 184 SRX9641633 Unrestricted 20.2 Metagenome 3300000244 *Microbiome Permanent Draft Hypersaline stromatolites microbial communitiesfrom Hamelin Pool, Shark Bay, Western Australia Hypersaline stromatolites from Hamelin Pool, Shark Bay, Western Australia, sample from Smooth mat University of New South Wales 3300000244 Metagenome Analysis released per JGI data release policy No Yes r.ruvindy@gmail.com Rendy Ruvindy No Environmental Aquatic Intertidal zone Marine Microbialites Hypersaline stromatolites -26.435 114.198 8.1 0 0 0 0 0 0 0.0 Metagenome 3300013453 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100495 University of Pennsylvania 3300013453 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 1848171 5633 8 1 16 3 SRX756503 0.0 Metagenome 3300011183 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - JTO22cm metaG DOE Joint Genome Institute (JGI) 3300011183 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes rstepanauskas@bigelow.org; wswingley@niu.edu Ramunas Stepanauskas; Wesley Swingley No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 41.6655 -87.5437 13-14 120921810 312139 299 23 521 45 SRX3008004 Unrestricted 0.0 Metagenome 3300048041 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - BG2-01_D100 (version 2) DOE Joint Genome Institute (JGI) 3300048041 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire soil 68.3634 19.0475 178648922 264267 89 9 109 16 Restricted 0.0 Metagenome 3300025148 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-14 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025148 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Aquifer 38.9383 -110.1342 667985578 1179437 665 27 981 41 SRX3198293 Unrestricted 0.0 Metagenome 3300054958 *Microbiome Permanent Draft Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA Blue grama grass litter microbial communities from Los Alamos, New Mexico, USA - Field_4-s115 day 28 DOE Joint Genome Institute (JGI) 3300054958 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Environmental Terrestrial Unclassified Plant litter Unclassified Blue grama grass litter 35.88 -106.3031 466856335 715147 169 96 198 123 Unrestricted 45.66 Metagenome 3300033177 *Microbiome Permanent Draft Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_09_05-R1 DOE Joint Genome Institute (JGI) 3300033177 Metagenome Analysis spades v. 3.13.0 Yes Yes ziels@mail.ubc.ca Ryan Ziels Yes 35477253 Engineered Bioreactor Unclassified Anaerobic Unclassified sludge 51.9691 5.6654 560229448 856729 497 0 639 5 SRX7542533 Unrestricted 42.18 Metagenome 3300044982 *Microbiome Permanent Draft Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA Soil microbial communities from the Harvard Forest Long-term Ecological Research (LTER) site, Massachusetts, USA - PH 28 years plot 13 DOE Joint Genome Institute (JGI) 3300044982 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes luizdomeignoz@gmail.com Luiz Domeignoz Horta No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 42.303 -72.1228 1103301956 1838945 343 69 522 84 SRX15792990 Unrestricted 14.89 Metagenome 3300027325 *Microbiome Permanent Draft Genome and metagenome analysis of marine red algae Porphyra Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male2 metaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027325 Metagenome Analysis spades v. 3.11.1 Yes Yes Brawley@maine.edu Susan Brawley No Host-associated Algae Unclassified Red algae Unclassified Marine 50.677 -3.24 319417036 439181 101 2 153 7 SRX2954899 Unrestricted 0.0 Metagenome 3300014294 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01389 Weill Cornell Medical College 3300014294 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.62 -73.99 26868152 43799 11 0 19 0 SRX823329 0.0 Metagenome 3300018028 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex DOE Joint Genome Institute (JGI) 3300018028 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 .3 851637975 1898985 661 6 1304 8 SRX3938854 Unrestricted 5.66 Metagenome 3300034157 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_18 DOE Joint Genome Institute (JGI) 3300034157 Metagenome Analysis metaspades v. 3.13.0 Yes Yes barkay@aesop.rutgers.edu; swr38@rutgers.edu Tamar Barkay; Spencer W. Roth No Environmental Terrestrial Wetlands Soil Unclassified untreated peat soil 64.9142 -147.8349 415931263 1089001 440 10 839 14 SRX7633909 Unrestricted 6.72 Metagenome 3300009397 *Microbiome Permanent Draft Microbial communities in swimming pool backwashes Microbial communities from sand-filter backwash in Singapore swimming pools - BD-2 Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300009397 Metagenome Analysis megahit released per JGI data release policy Yes Yes martintayqx@gmail.com Martin Tay No Engineered Built environment Unclassified Unclassified Unclassified Swimming pool sandfilter backwash 1.28967 103.85007 150499110 360873 93 65 141 120 0.0 Metagenome 3300025535 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1 (SPAdes) DOE Joint Genome Institute (JGI) 3300025535 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.045666 -121.866516 161735658 355570 169 4 291 1 SRX7142150 Unrestricted 0.0 Metagenome 3300002200 *Microbiome Permanent Draft Freshwater microbial community from Sao Paulo Zoo Lake, Brazil Freshwater microbial communities from San Paulo Zoo lake, Brazil - APR 2013 3300002200 Metagenome Analysis SoapDeNovo released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Lake -23.651072 -46.620675 115506287 345399 8 3 41 3 0.0 Metagenome 3300071141 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Wind River Experimental Forest, Washington, USA - WREF_073-O-20180627-COMP-DNA1 3300071141 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 2745470 8803 28 6 70 15 0.0 Metagenome 3300005763 *Microbiome Permanent Draft Algae and Fungi communities from freshwater lake in Auvergne, France during and after algae bloom Algae and Fungi communities from freshwater lake in Auvergne, France - sample CCAP7CHYT day 4 of algae bloom Institut Pasteur, Lille, France 3300005763 Metagenome Analysis Trinity 2.06 released per JGI data release policy No Yes luenlee@yahoo.com L Monchy, Luen Luen LI No Environmental Aquatic Lake Freshwater Algal bloom Lake 45.495847 2.887922 33396597 35954 45 26 153 28 0.0 Metagenome 3300012929 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300012929 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 3379892228 7220341 1629 82 2865 158 SRX3049000, SRX3048992, SRX3048993, SRX3048994, SRX3048995, SRX3048996, SRX3048997, SRX3048998, SRX3048999 Unrestricted 0.0 Metagenome 2019105003 *Microbiome Permanent Draft Wastewater viral communities from wastewater treatment facility in Singapore Viral communities in wastewater treatment process (IF) University of Illinois, Urbana-Champaign 2019105003 Metagenome Analysis Newbler assembly was used released per JGI data release policy No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Wastewater Dissolved organics (anaerobic) Nutrient removal Unclassified Wastewater 1.332 103.756 24210189 74915 0 0 0 0 0.0 Metagenome 3300012209 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG DOE Joint Genome Institute (JGI) 3300012209 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.5673 -123.4758 2906290790 5677280 1784 69 3085 123 SRX3372766 Unrestricted 0.0 Metagenome 3300022771 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA13 Version 2 University of New South Wales 3300022771 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 52075390 75601 36 2 45 3 0.0 Metagenome 3300022936 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L059-202B-1 DOE Joint Genome Institute (JGI) 3300022936 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 43.3 -89.38 843551194 1814576 658 141 976 232 SRX4801457 Unrestricted 9.72 Metagenome 3300002495 *Microbiome Permanent Draft Mangrove soil microbial communities from Bertioga, Brazil, sampling enzymes 454 Fosmid Sequence 3300002495 Metagenome Analysis CLC Genomics Workbench released by JGI data releasing policy No Yes dfdomingos@uol.com.br Daniela Domingos, Daniela F. Domingos No Environmental Aquatic Oceanic Marine Oil-contaminated sediment Mangrove soil 108562359 198863 18 0 69 0 0.0 Metagenome 3300002920 *Microbiome Permanent Draft Hot springs microbial communities from Mammoth Hot Springs, Yellowstone National Park, Wyoming, USA Hot springs microbial communities from Mammoth Hot Springs, Yellowstone National Park, Wyoming, USA-MHS Pond Facies_Gas lift University of Illinois, Urbana-Champaign 3300002920 Metagenome Analysis released per JGI data release policy No Yes ; dongyiran79@gmail.com Dr. Bruce W. Fouke, Dr. Bruce W. Fouke; Yiran Dong No Environmental Aquatic Unclassified Thermal springs Unclassified Hot springs 44.9766 -110.7016 .05 168749123 246904 108 1 172 3 0.0 Metagenome 3300021544 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps Marine sponge C. singaporensis associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - co52is 200bp no Eukaryotes last University of New South Wales 3300021544 Metagenome Analysis IDBA-UD released by Emmanuelle BOTTE Yes Yes e.botte@aims.gov.au; n.webster@aims.gov.au Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified Coelocarteria singaporensis (marine sponge) -9.8241 150.825833 57733836 122520 50 2 92 6 0.0 Metagenome 3300026031 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D2_rd (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026031 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.197227 -122.010124 82394504 194128 160 3 263 7 SRX7181211 Unrestricted 0.0 Metagenome 3300043703 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - Rondonia_Pasture_3_C100m DOE Joint Genome Institute (JGI) 3300043703 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.204 -62.774 996725182 2596832 683 14 1186 20 Unrestricted 7.98 Metagenome 3300021047 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5a_16mM DOE Joint Genome Institute (JGI) 3300021047 Metagenome Analysis spades v. 3.10.1 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 84911991 73916 4 1 8 2 SRX4010508 Unrestricted 68.64 Metagenome 3300037010 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Filamentous streamer microbial communities from Yellowstone Lake, YNP, Wyoming, USA - RO1DNA_8/2/18_3/3_streamer DOE Joint Genome Institute (JGI) 3300037010 Metagenome Analysis metaspades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Microbial mats filamentous streamer 44.5106 -110.3566 1751701606 2414815 657 181 898 237 SRX8287034 Unrestricted 34.3 Metagenome 3300026814 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A3-10 (SPAdes) DOE Joint Genome Institute (JGI) 3300026814 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 28934770 95458 125 3 214 4 SRX1991108 Unrestricted 0.0 Metagenome 3300014278 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 241_D2_2014-8-15 San Diego State University 3300014278 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 5276152 17743 26 11 43 28 0.0 Metagenome 3300008729 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764487809 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008729 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 67227661 116815 65 1 84 0 0.0 Metagenome 3300014712 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS62_18 University of Hohenheim 3300014712 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 63957958 113530 50 0 76 0 0.0 Metagenome 3300026289 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_10/4/2010_ DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026289 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 221323510 332569 129 14 185 19 SRX2714332 Unrestricted 0.0 Metagenome 3300056647 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.20W.15 SIP fraction DOE Joint Genome Institute (JGI) 3300056647 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 384194477 627045 88 40 146 69 Unrestricted 10.31 Metagenome 3300043095 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - Beaver5Rectum1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043095 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Rectum rectum 49.18 -122.54 226046753 391500 184 11 328 18 SRX8346447 Unrestricted 19.9 Metagenome 2236876001 *Microbiome Permanent Draft Marine and estuarine microbial communities from Columbia River Coastal Margin Marine microbial communities from Columbia River, CM, sample from CR-7km from mouth, GS312-0p1-CR7-chlmax University of South Carolina 2236876001 Metagenome Analysis No Yes mariyasmit@hotmail.com Mariya Smit, Mariya W. Smit No Environmental Aquatic Intertidal zone Marine Estuary Marine estuarine 46.167 -124.158 180615706 578588 366 12 571 15 0.0 Metagenome 3300012663 *Microbiome Permanent Draft Freshwater microbial communities from rivers and streams along an organic matter gradient associated with agriculture in Ontario, Canada Freshwater microbial communities from Indian River, Ontario, Canada - S50 Molecular Research LP (MR DNA) 3300012663 Metagenome Analysis metaSPAdes released by JGI data releasing policy No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Unclassified Freshwater 44.42735 -78.1359 8.34 239729706 758120 74 9 122 24 0.0 Metagenome 3300007737 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 764042746 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007737 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 1658282 4083 3 0 12 0 SRX024926 0.0 Metagenome 3300069353 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_043-M-20170627-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069353 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 73976444 198688 139 4 273 6 0.0 Metagenome 3300013258 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100294 University of Pennsylvania 3300013258 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 15100891 25841 8 0 13 0 SRX756607 0.0 Metagenome 3300063192 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA - Alan.Spe19 metaG DOE Joint Genome Institute (JGI) 3300063192 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.3 -110.5176 8-9 50177314 102402 39 3 55 3 Unrestricted 140.29 Metagenome 3300029610 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35992 Beijing Genomics Institute (BGI) 3300029610 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 200015401 272572 174 1 250 1 0.0 Metagenome 3300020296 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_A100000164 (ERX556002-ERR599140) CEA Genoscope 3300020296 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 35.7392 14.3321 170206352 439559 212 1 342 0 ERX555914, ERX556002 0.0 Metagenome 3300050163 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf litter microbial communities from Olympic Peninsula, Washington, USA - D15_RHK1_4_to_SEK1 DOE Joint Genome Institute (JGI) 3300050163 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Environmental Terrestrial Litterfall Plant litter Leaves Alder tree leaf litter 48.165 -124.244 661519170 1077601 324 115 510 158 Unrestricted 14.05 Metagenome 3300003601 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI037_S3LV_125m_DNA DOE Joint Genome Institute (JGI) 3300003601 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 259650553 528258 258 18 383 31 Unrestricted 0.0 Metagenome 3300019849 *Microbiome Permanent Draft Marine microbial communities from toxin-producing cyanobacterial mats in Guam and Florida Keys Cyanobacterial mat microbial communities from Anae Island, Guam, USA - VPG14-73 University of Maryland 3300019849 Metagenome Analysis MEGAHIT v1.1.1 released by JGI data releasing policy No Yes juliemeyer@ufl.edu Julie Meyer No Environmental Aquatic Oceanic Marine Benthic microbial mat 13.22 144.38 60224522 64149 40 20 50 17 SRX4473297 0.0 Metagenome 3300059633 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2015-0030 DOE Joint Genome Institute (JGI) 3300059633 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.703 -83.254 1178485818 2495959 552 247 844 363 Unrestricted 0.0 Metagenome 3300003997 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1 DOE Joint Genome Institute (JGI) 3300003997 Metagenome Analysis MEGAHIT v. 0.2.0-alpha Yes Yes sgtringe@lbl.gov, sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe, Susannah Tringe; Jinglie Zhou No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.05241603 -121.76907401 735940585 2242449 942 14 1989 20 SRX7142751 Unrestricted 0.0 Metagenome 3300030522 *Microbiome Permanent Draft Soil and ectomycorrhiza microbial communities from Populus trichocarpa stands in riparian zones in the Pacific Northwest, United States Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM DOE Joint Genome Institute (JGI) 3300030522 Metagenome Analysis spades v. 3.11.1 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Plants Unclassified Roots Unclassified ectomycorrhiza 45.6996 -121.669 1134666155 1734056 190 94 291 123 SRX5650621 Unrestricted 13.88 Metagenome 3300020540 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 13JUN2011 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020540 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 123381498 254838 101 16 171 29 SRX1989395 Unrestricted 0.0 Metagenome 3300009840 *Microbiome Permanent Draft Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A DOE Joint Genome Institute (JGI) 3300009840 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes klgravuer@ucdavis.edu Kelly Gravuer No Environmental Terrestrial Grasslands Soil Unclassified Serpentine soil 38.8722 -122.4269 2763390318 6066220 1858 18 3107 50 SRX2525429 Unrestricted 0.0 Metagenome 3300026267 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV259 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026267 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 313714920 686934 265 2 404 4 SRX2782449 Unrestricted 0.0 Metagenome 3300070699 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Kansas, USA - KONZ_003-M-20190715-COMP-DNA1 3300070699 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 960933 3212 11 0 22 2 0.0 Metagenome 3300010003 *Microbiome Finished Microbiology of confined controlled built environments Public houses floor microbial communities from the Eekholt wildlife park, Eekholt, Germany - public houses, PMA treated samples, P Eurofins MWG Operon 3300010003 Metagenome Analysis Ray Meta released per JGI data release policy No Yes alexander.mahnert@gmail.com Alexander Mahnert No Engineered Built environment Unclassified House Unclassified built environment 53.94803 10.026079 28610340 32801 13 3 10 4 0.0 Metagenome 3300055551 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.16C.17 SIP fraction DOE Joint Genome Institute (JGI) 3300055551 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 83650161 170394 109 32 189 42 Unrestricted 10.92 Metagenome 3300003869 *Microbiome Permanent Draft Mixed lab enrichment methylotrophic culture microbial communities from coastal waters in Matosinhos, Portugal Mixed lab enrichment methylotrophic culture microbial communities from coastal waters in Matosinhos, Portugal - Culture Y 3300003869 Metagenome Analysis NGEN released by JGI data releasing policy No Yes pmarco@ibmc.up.pt Paolo De Marco No Environmental Aquatic Coastal Marine Unclassified Mixed lab enrichment methylotrophic culture 41.1822 -8.7587 2282589 2552 1 1 1 1 0.0 Metagenome 3300042174 *Microbiome Permanent Draft Comparative metagenomics of microbial communities in gorgonian corals, marine sediments and seawater Coral tissue microbial communities from healthy Eunicella gazella from Algarve, Portugal - EG15H v2 Molecular Research LP (MR DNA) 3300042174 Metagenome Analysis Metawrap workflow v. 1.0.8 released by JGI data releasing policy Yes Yes rodrigoscosta@tecnico.ulisboa.pt Rodrigo Costa No Host-associated Invertebrates Coral Cnidaria Unclassified coral tissue 36.979778 -7.989111 8.1 25066347 25763 5 2 8 5 0.0 Metagenome 3300038696 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Unnamed Portals Lake, Antarctica - #26 Australian Centre for Ecogenomics 3300038696 Metagenome Analysis Spades v. 3.13.0 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.516833 78.467833 530690970 943323 235 49 323 72 0.0 Metagenome 7000000025 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2 of subject 159005010 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000025 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 103838919 172469 0 0 0 0 0.0 Metagenome 3300045172 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_3_D DOE Joint Genome Institute (JGI) 3300045172 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 155615515 184011 93 1 112 2 Unrestricted 152.65 Metagenome 3300014552 *Microbiome Permanent Draft Human fecal microbial communities from obese patients in Germany Human fecal microbial communities from obese patients in Germany - AS56_6 University of Hohenheim 3300014552 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 112264431 166146 66 0 111 0 0.0 Metagenome 3300024301 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011504CT (spades assembly) DOE Joint Genome Institute (JGI) 3300024301 Metagenome Analysis spades v. 3.11.1 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 851292742 1609668 496 18 827 45 SRX4498682 Unrestricted 34.96 Metagenome 3300013860 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In3 SAF170 SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300013860 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1 -118.1 12258806 19708 27 5 69 10 Unrestricted 0.0 Metagenome 3300008328 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159611913 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008328 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 121969856 197928 99 0 138 1 0.0 Metagenome 3300040426 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_016-M-20170606-COMP-DNA1 Battelle Memorial Institute 3300040426 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 4536136 13341 16 0 24 0 0.0 Metagenome 2124908010 *Microbiome Permanent Draft Keratinized gingiva microbial communities from Saint Louis, Missouri, USA Keratinized_gingiva_contig300 Los Alamos National Laboratory 2124908010 Metagenome Analysis released per JGI data release policy No Yes BCM No Host-associated Mammals: Human Oral cavity Digestive system Attached/Keratinized gingiva Keratinized gingiva 38.646 -90.224 87500670 142911 17 0 49 0 0.0 Metagenome 3300001596 *Microbiome Permanent Draft Marine cyanobacterial communities from Panama, similar to Oscillatoria species Marine cyanobacterial communities from Panama - species 1 Leptolyngbya sp. DOE Joint Genome Institute (JGI) 3300001596 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes lgerwick@ucsd.edu Lena Gerwick No Environmental Aquatic Unclassified Marine Unclassified Marine 9.28 -79.97 407333219 371391 56 6 59 6 SRX8048359, SRX8048358 Unrestricted 0.0 Metagenome 3300070855 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Treehaven, Wisconsin, USA - TREE_014-M-20200708-COMP-DNA1 3300070855 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 26300407 80100 76 8 142 8 0.0 Metagenome 3300044789 *Microbiome Permanent Draft Sediment microbial communities from East River floodplain, Colorado, United States Sediment microbial communities from East River floodplain, Crested Butte, Colorado, United States - eastriver_mg_176 DOE Joint Genome Institute (JGI) 3300044789 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes keiluweit@umass.edu Marco Keiluweit No Environmental Terrestrial Sediment Floodplain Unclassified sediment 38.9229 -106.9499 599686068 1554108 483 14 876 18 Unrestricted 6.82 Metagenome 3300007851 *Microbiome Finished Contaminated groundwater microbial communities from Tokyo, Japan Contaminated groundwater microbial communities from Tokyo, Japan National Institute of Advanced Industrial Science and Technology (AIST) 3300007851 Metagenome Analysis Phrap v.4.24 released per JGI data release policy No Yes toshikom@cc.tuat.ac.jp Toshiko Miura No Environmental Aquatic Groundwater Freshwater Contaminated Groundwater 35.683333 139.75 6807541 27095 27092 0 0 0 0.0 Metagenome 3300013572 *Microbiome Permanent Draft Marine and human oral microbial communities from various locations - University of British Columbia Marine microbial communities from various locations - University of British Columbia - seawater enrichment SCG54 University of British Columbia 3300013572 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Marine 2464599 5111 2 0 7 0 SRX143163 0.0 Metagenome 3300006060 *Microbiome Permanent Draft Microbial Ecosystem of Kuchchh Desert soil subsurface microbial communities from Kuchchh Desert, Runn of Kuch, Gujarat, India Xcelris Genomics 3300006060 Metagenome Analysis Unassembled released per JGI data release policy No Yes qnal.jain@gmail.com Kunal Jain No Environmental Terrestrial Sand Soil Desert Desert Soil 24.339444 69.183333 84069395 370088 240 7 400 11 0.0 Metagenome 3300015351 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_12JUL2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015351 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 363336674 619538 15 84 24 125 SRX3923581 Unrestricted 10.15 Metagenome 3300001240 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and P2 (5) DOE Joint Genome Institute (JGI) 3300001240 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 66140571 121136 61 0 94 0 SRX3311629 Unrestricted 0.0 Metagenome 3300011852 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00641 Weill Cornell Medical College 3300011852 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.8 -73.95 43270156 68540 24 0 28 0 SRX822608 0.0 Metagenome 3300049429 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River, Colorado, USA - 13-Glucose+Brdu_Long DOE Joint Genome Institute (JGI) 3300049429 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 216963218 521135 297 56 492 80 Restricted 17.63 Metagenome 3300044767 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 401-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044767 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9758 -107.0637 564234627 1492676 480 25 867 40 Unrestricted 7.99 Metagenome 3300027433 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3w-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300027433 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 13408888 45190 77 4 157 4 SRX1991144 Unrestricted 0.0 Metagenome 3300049854 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Middleton, Wisconsin, USA - dorncreek_2019_sed_WHONDRS-S19S_0043 DOE Joint Genome Institute (JGI) 3300049854 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 43.14501 -89.472992 148658830 335249 278 3 510 8 Restricted 0.0 Metagenome 3300001375 *Microbiome Permanent Draft Goat rumen microbial communities from Langston University, Oklahoma, USA Goat rumen bacterial communities from Langston, Oklahoma, USA - assemble1 Cornell University 3300001375 Metagenome Analysis released per JGI data release policy No Yes zsuping@tnstate.edu Suping Zhou No Host-associated Mammals Stomach Digestive system Rumen Goat rumen 35.453976 -97.515884 64563911 172032 350 22 813 32 0.0 Metagenome 3300003887 *Microbiome Permanent Draft Freshwater pond sediment microbial communities from Middleton WI, enriched by Humin and/or Glucose under anaerobic conditions Freshwater pond sediment microbial communities from Middleton WI, HM 5/6 enriched by Humin under anaerobic conditions -HM Sample 3 University of Wisconsin, Madison 3300003887 Metagenome Analysis CLC Genomic Workbench released per JGI data release policy Yes Yes jmejia@wisc.edu Jacqueline Mejia No Environmental Aquatic Sediment Freshwater Unclassified Anaerobic Enrichment Culture 175020349 347419 120 0 221 0 0.0 Metagenome 3300048926 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled DOE Joint Genome Institute (JGI) 3300048926 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Host-associated Plants Unclassified Roots Unclassified Root 42.40581 -85.40228 890839761 1247502 280 49 393 59 Unrestricted 36.14 Metagenome 3300059779 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1370A-3 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059779 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.234 -123.9135 61149705 142887 160 53 272 76 SRX2753584 Unrestricted 0.0 Metagenome 3300011249 *Microbiome Permanent Draft Metagenomes of Arctic soils Basal ice microbial communities from dark ice on Arctic glacier surface, Midre Lovenbreen, Svalbard, Norway (sample 23) University of Bristol 3300011249 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes EAEloeFadrosh@lbl.gov; maisie.nash@bristol.ac.uk; ama@envs.au.dk Emiley Eloe-Fadrosh; Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Unclassified Unclassified Unclassified Basal Ice 79.48416667 12.09222222 81857371 168663 94 6 133 18 0.0 Metagenome 3300025502 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKJ (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025502 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 309922874 533673 142 24 207 46 SRX2746860 Unrestricted 0.0 Metagenome 3300005137 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage3 60B DOE Joint Genome Institute (JGI) 3300005137 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8406114 -122.2923487 65854061 90405 178 0 206 0 SRX3194971 Unrestricted 0.0 Metagenome 3300001730 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP-134 DOE Joint Genome Institute (JGI) 3300001730 Metagenome Analysis Yes Yes mbsulli@gmail.com, sacinas@icm.csic.es; mbsulli@gmail.com Matthew Sullivan, Silvia G. Acinas; Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 18.3272 -52.639 75800867 166106 62 0 123 1 SRX4924714 Unrestricted 0.0 Metagenome 3300070444 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Northern Great Plains Research Laboratory, North Dakota, USA - NOGP_062-M-20200708-COMP-DNA1 3300070444 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 18451636 52884 77 9 151 12 0.0 Metagenome 3300070902 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Caribou-Poker Creeks Research Watershed, Alaska, USA - BONA_009-M-20190828-COMP-DNA1 3300070902 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 9052173 26976 41 6 81 10 0.0 Metagenome 3300031366 *Microbiome Permanent Draft Soil and ectomycorrhiza microbial communities from Populus trichocarpa stands in riparian zones in the Pacific Northwest, United States Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S DOE Joint Genome Institute (JGI) 3300031366 Metagenome Analysis spades v. 3.12.0 Yes Yes kpeay@stanford.edu Kabir Peay No Environmental Terrestrial Riparian zone Soil Trees stand soil 47.6684 -121.924 1247800323 3469104 930 46 1596 68 SRX5650616 Unrestricted 8.47 Metagenome 3300027960 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Cubitermes ugandensis midgut segment microbial communities from Kakamega Forest, Kenya - Cu122M (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027960 Metagenome Analysis spades v. 3.11.1 Yes Yes brune@mpi-marburg.mpg.de Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 0.2917 34.856 487078775 646052 5 8 9 6 SRX3315283 Unrestricted 0.0 Metagenome 3300029622 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35733 Beijing Genomics Institute (BGI) 3300029622 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 290847917 372757 257 1 397 0 0.0 Metagenome 3300009467 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530 DOE Joint Genome Institute (JGI) 3300009467 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes hteeling@mpi-bremen.de Hanno Teeling Yes 27054497, 31316134 Environmental Aquatic Epipelagic Marine Unclassified Pelagic marine 54.1883 7.9 869657389 1525027 616 166 943 236 SRX2999738 Unrestricted 0.0 Metagenome 3300039640 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Temperate deciduous broadleaf forest soil microbial communities from Baltimore, USA - 005_R1 University of Maryland 3300039640 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate deciduous broadleaf forest soil 39.3440667 -76.6013167 67611411 202534 301 7 545 9 0.0 Metagenome 3300022856 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from Ace Lake, Antarctica - #797 DOE Joint Genome Institute (JGI) 3300022856 Metagenome Analysis spades v. 3.11.1 Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 185885369 369388 132 12 201 24 SRX4397183 Unrestricted 14.55 Metagenome 7000000049 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human retroauricular crease microbial communities from NIH, USA - visit 1, subject 159591683 replicate 1 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000049 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Skin Integumentary system Retroauricular crease Human 39.0042816 -77.1012173 10409458 19891 0 0 0 0 SRX025505, SRX024601, SRX024602, SRX024720 0.0 Metagenome 3300011739 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01063 Weill Cornell Medical College 3300011739 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.67 -73.95 42202195 54172 19 0 27 0 SRX823025 0.0 Metagenome 3300049506 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MC19 DOE Joint Genome Institute (JGI) 3300049506 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 23356461 55874 65 0 147 0 Unrestricted 42.63 Metagenome 3300046011 *Microbiome Permanent Draft Freshwater bacterial and viral communities from Lake Mendota, Wisconsin, United States Freshwater viral communities from Lake Mendota, Wisconsin, United States - ME_2020-10-19_23.5m_Virus_AB DOE Joint Genome Institute (JGI) 3300046011 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes karthik@bact.wisc.edu Karthik Anantharaman No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 43.0989 -89.4054 956615887 1963327 269 44 431 68 Unrestricted 32.36 Metagenome 3300006499 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 159268001 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006499 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; snayfach@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 147067976 195460 133 1 204 2 0.0 Metagenome 3300036844 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_Dec_plot5_rep3 DOE Joint Genome Institute (JGI) 3300036844 Metagenome Analysis metaspades v. 3.13.0 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6541 -80.6298 1026327784 1782026 487 13 856 23 SRX8186430 Unrestricted 14.35 Metagenome 3300070222 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from University of Notre Dame Environmental Research Center, Michigan, USA - UNDE_010-M-20200806-COMP-DNA1 3300070222 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 53443632 150833 119 1 232 4 0.0 Metagenome 3300026157 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_A_D2_MG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026157 Metagenome Analysis spades v. 3.11.1 Yes Yes stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4969 -122.1331 369601454 697650 350 5 531 2 SRX2523447 Unrestricted 0.0 Metagenome 3300014720 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo - kab_092012_35m DOE Joint Genome Institute (JGI) 3300014720 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -1.64 29.05 1580782681 3103490 1387 131 2050 219 Unrestricted 13.7 Metagenome 3300020179 *Microbiome Permanent Draft Freshwater microbial communities from Lake Tanganyika, Tanzania Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m DOE Joint Genome Institute (JGI) 3300020179 Metagenome Analysis spades v. 3.10.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater lake -4.8915 29.586 915819188 1642080 362 61 597 83 SRX4821857 Unrestricted 44.47 Metagenome 3300042347 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME01Sep2006D11-rr0781 DOE Joint Genome Institute (JGI) 3300042347 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 629931025 1037688 300 29 439 40 Unrestricted 15.45 Metagenome 3300042916 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada - Lake 18-339 Genome Quebec 3300042916 Metagenome Analysis metaSPAdes v. 3.13.0 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.288777 -119.531587 1368409474 3083618 613 114 1003 215 0.0 Metagenome 3300012434 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100600 University of Pennsylvania 3300012434 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8577407 16455 27 5 33 8 SRX756154 0.0 Metagenome 3300043827 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Freshwater microbial communities from Matano Lake, South Sulawesi, Indonesia - Matano_1m_2014 DOE Joint Genome Institute (JGI) 3300043827 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Freshwater -2.4667 121.2833 240387548 436976 141 14 234 19 Unrestricted 34.97 Metagenome 3300002365 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 14SEP2010 deep hole epilimnion DOE Joint Genome Institute (JGI) 3300002365 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 16870624 42630 49 18 99 37 SRX1989025 Unrestricted 0.0 Metagenome 3300013115 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 234m, 250-2.7um, replicate a Georgia Genomics Facility 3300013115 Metagenome Analysis IDBA 1.1.1 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 330864233 407037 181 108 222 151 0.0 Metagenome 3300040391 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_027-M-20170711-COMP-DNA1 Battelle Memorial Institute 3300040391 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 5485377 16226 49 8 73 16 0.0 Metagenome 3300029176 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021315-129 Beijing Genomics Institute (BGI) 3300029176 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 73852328 86409 62 0 73 0 0.0 Metagenome 3300040509 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Woodworth, Northern Plains, ND, USA - WOOD_001-M-20140702-COMP-DNA1 Argonne National Laboratory 3300040509 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes janet.jansson@pnnl.gov; lstanish@gmail.com Janet Jansson; Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 47.12823 -99.24136 3103104 10066 34 2 56 3 ERX2134013 0.0 Metagenome 3300011225 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -PFALL37 Weill Cornell Medical College 3300011225 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.71 -74.0 44517198 62510 19 0 19 0 SRX823462 0.0 Metagenome 3300045568 *Microbiome Draft Lake microbial communities from Canada Lake sediment microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-549 Genome Quebec 3300045568 Metagenome Analysis MEGAHIT v1.0.6 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Lake Sediment 49.008293 -122.35186 75337555 106332 50 10 93 10 0.0 Metagenome 3300002559 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-5-D DOE Joint Genome Institute (JGI) 3300002559 Metagenome Analysis Yes Yes jsvander@ucdavis.edu Jean VanderGheynst Yes 27981239 Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 92370238 172508 123 8 202 22 SRX2557215 Unrestricted 0.0 Metagenome 3300019480 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Enriched compost microbial communities from Sao Paulo Zoo, Sao Paulo, Brazil - thermophilic consortium ZCTH05_CM Center for Advanced Technologies in Genomics, Sao Paulo University 3300019480 Metagenome Analysis MetaSPAdes v3.10.1 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Engineered Solid waste Composting Zoo waste Unclassified compost -23.651072 -46.620675 12426069 15244 19 0 16 0 0.0 Metagenome 3300050253 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_4 DOE Joint Genome Institute (JGI) 3300050253 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -77.598 161.007 519459592 887441 138 41 188 67 SRX18235858 Restricted 17.01 Metagenome 3300045515 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Cordillera ecozone, Canada - Lake 13-567 Genome Quebec 3300045515 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 62.187056 -134.685124 797921707 1776967 354 192 588 312 0.0 Metagenome 3300005686 *Microbiome Permanent Draft Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia Enhanced biological phosphorus removal bioreactor viral communities from the University of Queensland, Australia - SBR4-V92206 Phage Sequencing University of Queensland 3300005686 Metagenome Analysis CLC 6.0 Released per Connor Skennerton (Sep 15, 2015) No Yes c.skennerton@gmail.com Connor Skennerton No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor lab-scale EBPR bioreactor -27.49999 153.012098 45800549 96751 23 2 41 1 0.0 Metagenome 3300004235 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 74_LOW10 DOE Joint Genome Institute (JGI) 3300004235 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 78131050 189188 42 0 65 0 SRX2720796 Unrestricted 0.0 Metagenome 3300049445 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 soil DOE Joint Genome Institute (JGI) 3300049445 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 46.121649 -123.269525 5.03 1163967337 1851287 330 25 560 38 Unrestricted 13.49 Metagenome 3300034031 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 49SNC DOE Joint Genome Institute (JGI) 3300034031 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological biocrust 34.3778 -117.6098 198929786 421090 275 19 536 38 SRX7621464 Unrestricted 14.21 Metagenome 3300013168 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100306 University of Pennsylvania 3300013168 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 38516577 66727 17 0 22 0 SRX756595 0.0 Metagenome 3300002318 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP13-I5 3300002318 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300009489 *Microbiome Permanent Draft Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - FS881 no min length Marine Biological Laboratory 3300009489 Metagenome Analysis Ray 2.3.1 released per JGI data release policy No Yes randerson@mbl.edu, randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow diffuse flow hydrothermal vent 18.375 -81.797 253547219 1004650 218 16 544 24 0.0 Metagenome 3300012550 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100738 University of Pennsylvania 3300012550 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 9055261 20658 12 4 37 10 SRX756112 0.0 Metagenome 3300011905 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00726 Weill Cornell Medical College 3300011905 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -74.0 47780078 90493 32 0 36 0 SRX822693 0.0 Metagenome 3300030510 *Microbiome Permanent Draft Agave microbial communities from California, USA, and Mexico Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2) (version 2) DOE Joint Genome Institute (JGI) 3300030510 Metagenome Analysis spades v. 3.12.0 Yes Yes laila.partida@cinvestav.mx Laila P. Partida-Martinez No Environmental Terrestrial Agricultural land Soil Unclassified Soil 21.195 -100.439 417105684 1080987 824 38 1611 60 SRX6855689 Unrestricted 10.96 Metagenome 3300026706 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN624 (SPAdes) DOE Joint Genome Institute (JGI) 3300026706 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.05 -99.1 9556115 31706 64 2 126 3 SRX1987001 Unrestricted 0.0 Metagenome 3300011673 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway plastic -P00937 Weill Cornell Medical College 3300011673 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Plastic surface city subway plastic 40.76 -73.92 11873605 15930 9 0 9 0 SRX822900 0.0 Metagenome 3300011338 *Microbiome Finished Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju Chunlab, Inc 3300011338 Metagenome Analysis SPAdes 3.8.2 released by JGI data releasing policy No Yes chojc@inha.ac.kr; krmoon518@gmail.com Jang-Cheon Cho; Kira Moon No Environmental Aquatic River Freshwater Unclassified Freshwater 37.5955556 126.817072 19431838 27286 0 0 0 0 0.0 Metagenome 3300034696 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring water microbial communities from Yellowstone National Park, WY, United States - YNP_Buffalopool_103118 DOE Joint Genome Institute (JGI) 3300034696 Metagenome Analysis metaspades v. 3.13.0 Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 44.5324 -110.7974 543999899 1258112 365 15 490 19 SRX8235729 Unrestricted 238.58 Metagenome 3300033408 *Microbiome Permanent Draft Wetland soil microbial communities from various locations Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT DOE Joint Genome Institute (JGI) 3300033408 Metagenome Analysis spades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified soil 41.3777 -82.5117 4779283942 11643922 2844 31 5017 67 SRX7531779 Unrestricted 0.0 Metagenome 3300009535 *Microbiome Permanent Draft Host-associated microbial communities of aphids from plants in several locations around USA Microbial communities of aphids from Calyophus hartwegii in Tucson, AZ, USA - Macrosiphum gaurae seqcov University of Texas, Austin 3300009535 Metagenome Analysis CLC Genomics released per JGI data release policy Yes Yes becky.chong@utexas.edu Rebecca Chong No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Calyophus hartwegii 32.23184 -110.950699 265644161 141660 1 1 1 1 0.0 Metagenome 3300025397 *Microbiome Permanent Draft Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico and Hudson Canyon, USA Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN10B Hudson Canyon (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025397 Metagenome Analysis spades v. 3.11.1 Yes Yes mcredmond@uncc.edu Molly C. Redmond No Environmental Aquatic Cold seeps Marine Unclassified Methane seep mesocosm 39.54 -72.4 174893486 294352 125 0 179 0 SRX2754429 Unrestricted 0.0 Metagenome 3300048789 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 E3 1-5 DOE Joint Genome Institute (JGI) 3300048789 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3532 19.0469 222587686 396915 173 12 301 21 Restricted 14.19 Metagenome 3300028599 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160524 (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300028599 Metagenome Analysis spades v. 3.11.1 Yes Yes hteeling@mpi-bremen.de Hanno Teeling No Environmental Aquatic Subtidal zone Marine Sediment sediment 54.1817 7.9018 2540355231 6126157 1438 111 2686 159 SRX9088780, SRX9088779, SRX9088778 Unrestricted 6.93 Metagenome 3300057244 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Prineville, Oregon, USA - crookedriver_2019_sed_WHONDRS-S19S_0041 DOE Joint Genome Institute (JGI) 3300057244 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 44.299994 -120.858196 1847902456 4666745 1456 33 2664 61 Restricted 0.0 Metagenome 3300009148 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG DOE Joint Genome Institute (JGI) 3300009148 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Miscanthus rhizosphere 42.3948 -85.3738 3843420516 7819604 2552 130 4262 237 SRX3203325 Unrestricted 0.0 Metagenome 3300008745 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764083206 replicate 2 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008745 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 131234198 203266 103 0 152 0 0.0 Metagenome 3300028301 *Microbiome Permanent Draft Antarctic microbial communities Marine microbial communities from Organic Lake, Antarctica - GS379 with 3.0UM filter - spades JGI facility at Oak Ridge National Laboratory 3300028301 Metagenome Analysis Spades v. 3.11.1 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake -68.46233 78.19663 18505739 35921 11 6 12 4 0.0 Metagenome 3300001414 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 DOE Joint Genome Institute (JGI) 3300001414 Metagenome Analysis Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 33167563 101061 89 8 128 12 SRX1987241 Unrestricted 0.0 Metagenome 3300027664 *Microbiome Permanent Draft Comparative metagneomics of mesophilic and thermophilic cellulose-adapted consortia Cellulose adapted compost microbial communities from Newby Island Compost Facility, Milpitas, CA, USA - BGW Initial Compost (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027664 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Solid waste Composting Bio- and green waste (BGW) Unclassified Feedstock adapted compost 37.86971 -122.31414 535314072 1013200 632 17 1011 32 SRX3311904 Unrestricted 0.0 Metagenome 3300048767 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 E1 30-34 DOE Joint Genome Institute (JGI) 3300048767 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.0467 276380853 440670 158 2 301 3 Restricted 13.13 Metagenome 3300043334 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-280 Genome Quebec 3300043334 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.003013 -100.065714 2195066855 4697449 928 254 1461 402 0.0 Metagenome 3300002719 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A3-12 DOE Joint Genome Institute (JGI) 3300002719 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 241687 810 27 1 39 2 SRX1991261 Unrestricted 0.0 Metagenome 3300039944 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Mountain Lake Biological Station, Appalachians & Cumberland Plateau, VA, USA - MLBS_005-M-20180611-COMP-DNA1 Battelle Memorial Institute 3300039944 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.37828 -80.52484 19306921 54461 56 4 84 2 0.0 Metagenome 3300039402 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site1_salt_MIII_4 DOE Joint Genome Institute (JGI) 3300039402 Metagenome Analysis metaspades v. 3.13.0 released based on JGI ITS Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Salt marsh microbial mat 20.7609 58.6478 78120160 216631 74 4 120 5 SRX9601889, SRX9601890 Unrestricted 0.0 Metagenome 3300034143 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 57SNS DOE Joint Genome Institute (JGI) 3300034143 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Sub-biocrust Soil Unclassified sub-biocrust soil 34.7856 -115.66 231109977 566904 361 8 619 12 SRX7621471 Unrestricted 9.12 Metagenome 3300045755 *Microbiome Draft Lake microbial communities from Canada Lake sediment microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-461 Genome Quebec 3300045755 Metagenome Analysis MEGAHIT v1.0.6 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Lake Sediment 49.243327 -122.946538 47147286 67571 48 7 96 9 0.0 Metagenome 3300039323 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 626_M Beijing Genomics Institute (BGI) 3300039323 Metagenome Analysis Yes Yes snayfach@lbl.gov Stephen Nayfach Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 140897544 181221 98 0 183 0 ERX491282 0.0 Metagenome 3300029763 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 044_10_27_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029763 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 192040824 237920 188 0 270 0 0.0 Metagenome 3300007247 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 764083206 replicate 1 reassembly Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300007247 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 2742248 7019 10 0 14 3 SRX024913 0.0 Metagenome 3300029051 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from mother in Denmark - 350_M Beijing Genomics Institute (BGI) 3300029051 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 158985529 190579 120 0 146 0 ERX491106 0.0 Metagenome 3300044926 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_6_D DOE Joint Genome Institute (JGI) 3300044926 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 186086089 222667 111 1 117 1 Unrestricted 110.36 Metagenome 3300039064 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Sweden Surface water microbial communities from sewage treatment plant in Sweden - SWESTP52 - Henriksdal-sandfiltered 164 University of Gothenburg 3300039064 Metagenome Analysis Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified surface water 59.310676 18.108437 97278816 270727 114 30 218 53 0.0 Metagenome 3300003142 *Microbiome Permanent Draft Marine sediment microbial communities from deep subseafloor Marine sediment microbial communities from deep subseafloor - Sample from 5.1 mbsf Japan Agency for Marine-Earth Science and Technology 3300003142 Metagenome Analysis Made public because these are downloaded from Genbank No Yes takamih@jamstec.go.jp Hideto Takami Yes 24624126 Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Marine sediment 41.1773 142.2013 37446132 71971 29 1 19 2 0.0 Metagenome 3300019825 *Microbiome Permanent Draft Microbial mat bacterial communities from Rhone River delta, Camargue, France Microbial mat bacterial communities from Rhone River delta, Camargue, France - 5 University of Barcelona 3300019825 Metagenome Analysis velvet released by Mercedes Berlanga No Yes mberlanga@ub.edu Mercedes Berlanga No Environmental Aquatic Unclassified Sediment Unclassified Microbial mats 43.6 4.6 56496487 156710 89 3 149 0 0.0 Metagenome 3300043146 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8WB15 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043146 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 55980415 152745 140 10 257 18 SRX8379796 Unrestricted 17.25 Metagenome 3300024455 *Microbiome Permanent Draft Permafrost microbial communities from glacier foreland in Svalbard, Norway Permafrost microbial communities from glacier foreland in Svalbard, Norway - ML6 KOREA POLAR RESEARCH INSTITUTE 3300024455 Metagenome Analysis MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes sarbjeet.niraula@mavs.uta.edu Sarbjeet Niraula No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 78.9056615 12.07658156 8.3 1802074 5987 21 4 39 6 0.0 Metagenome 3300005610 *Microbiome Permanent Draft Soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, under manipulated climate change conditions. Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 DOE Joint Genome Institute (JGI) 3300005610 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jmtalbot@bu.edu, jmtalbot@bu.edu; ptempler@bu.edu Jennifer Talbot, Jennifer Bhatnagar; Pamela Templer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 2350827815 7040562 1155 109 2102 228 SRX2838811 Unrestricted 0.0 Metagenome 3300070709 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lajas Experimental Station, Puerto Rico, USA - LAJA_002-M-20160912-COMP-DNA1 3300070709 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Agricultural land Soil 914962 3434 15 10 28 15 0.0 Metagenome 3300048892 *Microbiome Permanent Draft Rhizoplane soil and roots microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA Soil microbial communities from greenhouse in W.K. Kellogg Biological Station, Michigan, USA - CIR soil_2a N15 DOE Joint Genome Institute (JGI) 3300048892 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes cordov13@msu.edu Carolina Cordova No Environmental Terrestrial Unclassified Soil Unclassified Soil 42.40581 -85.40228 1753179833 2872244 596 17 1006 27 Unrestricted 13.59 Metagenome 7000000340 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 686765762 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000340 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 2204542 6406 0 0 0 0 0.0 Metagenome 3300027349 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage B1F14 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027349 Metagenome Analysis spades v. 3.11.1 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 42464995 54245 61 0 46 0 SRX3195102 Unrestricted 0.0 Metagenome 3300003791 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 DOE Joint Genome Institute (JGI) 3300003791 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 35.6667 -78.5097 293097043 500344 197 3 271 5 SRX2770671 Unrestricted 0.0 Metagenome 3300004202 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 26_LOW6 DOE Joint Genome Institute (JGI) 3300004202 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 121883723 311130 70 1 135 0 SRX2720164 Unrestricted 0.0 Metagenome 3300011932 *Microbiome Permanent Draft Mine pit pond microbial communities from Vermont, USA Mine pit pond microbial communities from Vermont, USA - 1S University of Vermont 3300011932 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 27896068 Environmental Aquatic Alkaline Non-marine Saline and Alkaline Mine pit pond Mine pit pond 43.727094 -72.425964 19784250 37881 19 3 30 4 SRX952405 0.0 Metagenome 7000000275 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764811490 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000275 Metagenome Analysis No Yes ipagani@lbl.gov; nckyrpides@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Nikos Kyrpides; Natalia Ivanova No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 20663743 44860 0 0 0 0 0.0 Metagenome 3300046327 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River watershed, Colorado, USA - ER_53 DOE Joint Genome Institute (JGI) 3300046327 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9236 -106.9499 406130617 964819 1253 28 2526 47 Restricted 0.0 Metagenome 3300025840 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025840 Metagenome Analysis spades v. 3.11.1 Yes Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 551081378 1182059 308 97 472 150 SRX2858576 Unrestricted 0.0 Metagenome 3300031754 *Microbiome Permanent Draft Hardwood forest soil microbial communities from various locations in the United States Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 DOE Joint Genome Institute (JGI) 3300031754 Metagenome Analysis spades v. 3.12.0 Yes Yes jdraff@indiana.edu Jonathan Raff No Environmental Terrestrial Temperate forest Soil Bulk soil hardwood forest soil 39.0844 -86.4705 2755945856 6011632 932 24 1595 53 SRX5360345 Unrestricted 9.1 Metagenome 3300056653 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Peat moss microbial communities from Litchfield Island, Antarctica - 16O.20C.10 SIP fraction DOE Joint Genome Institute (JGI) 3300056653 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Host-associated Plants Unclassified Peat moss Unclassified Peat moss -64.77 -64.09 115597701 214343 52 3 74 5 Unrestricted 10.9 Metagenome 3300015290 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_09MAY2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015290 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Switchgrass phyllosphere 42.39 -85.37 141904448 248835 17 65 27 142 SRX3921980 Unrestricted 8.97 Metagenome 3300070935 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_043-M-20171110-COMP-DNA1 3300070935 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 9936207 32089 28 1 83 1 0.0 Metagenome 3300007931 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764508039 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007931 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 36318865 66056 28 0 57 0 0.0 Metagenome 3300007776 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS915_Marker113_DNA CLC_assembly Marine Biological Laboratory 3300007776 Metagenome Analysis CLC genomics workbench, v. 7.0 released by Caroline Fortunato No Yes jhuber@mbl.edu, jhuber@whoi.edu; randerson@carleton.edu; cfortunato@gmail.com; elks@mit.edu Huber, Julie Huber; Rika Anderson; Caroline Fortunato; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse vent fluid, hydrothermal vents 45.9228 -129.9883 404034605 744609 120 13 316 14 0.0 Metagenome 3300012065 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ007 MetaG DOE Joint Genome Institute (JGI) 3300012065 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.9179 -74.5218 81150500 130738 133 5 185 6 SRX3539437 Unrestricted 0.0 Metagenome 3300021053 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5a_32mM DOE Joint Genome Institute (JGI) 3300021053 Metagenome Analysis spades v. 3.10.1 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 85582456 78432 5 1 7 2 SRX4010641 Unrestricted 60.27 Metagenome 3300030058 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1 DOE Joint Genome Institute (JGI) 3300030058 Metagenome Analysis spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 68.3535 19.0473 1091121002 2344981 579 105 967 162 SRX5355628 Unrestricted 9.94 Metagenome 3300043693 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from pasture in State of Rondonia, Brazil - Rondonia_Pasture_2_A100m DOE Joint Genome Institute (JGI) 3300043693 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Grasslands Soil Pasture Soil -10.17 -62.833 590477791 1677048 565 15 1101 19 Unrestricted 6.63 Metagenome 3300005299 *Microbiome Permanent Draft Drosophila gut microbial communities from New York, USA Drosophila gut microbial communities from New York, USA - Drosophila falleni female 1 gut Cornell University 3300005299 Metagenome Analysis Velvet with MeGAMerge released per JGI data release policy No Yes vgm@email.arizona.edu, v.martinson@rochester.edu Vince Martinson No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Drosophila falleni female adult gut 43.025606 -77.572811 40152812 115547 50 10 90 12 0.0 Metagenome 3300012018 *Microbiome Permanent Draft Activated sludge microbial communities from Shanghai, China Activated sludge microbial communities from Shanghai, China - membrane bioreactor - Activated sludge (MBR) Tongji University 3300012018 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified Activated sludge 31.3 121.5 483317219 1124505 217 15 493 21 SRX451135 0.0 Metagenome 3300000410 *Microbiome Permanent Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P1 v4 (version 4) DOE Joint Genome Institute (JGI) 3300000410 Metagenome Analysis released based on JGI ITS No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 0 0 0 0 0 0 Unrestricted 0.0 Metagenome 3300012945 *Microbiome Permanent Draft Guam Dysideidae Sponge Holobiont Metagenomes Dysideidae sponge tissue microbial communities from Piti Bomb Holes, Guam, USA - SP5 SP5_idba_062615 University of California, San Diego, Scripps Institute of Oceanography 3300012945 Metagenome Analysis IDBA-UD v 1.1.1 released by JGI data releasing policy No Yes jmblanton@ucsd.edu; spodell@ucsd.edu Jessica Blanton; Sheila Podell Yes 28319100, 32576248 Host-associated Porifera Unclassified Sponge Unclassified sponge tissue 13.345738 144.638186 88985024 90454 17 4 18 2 SRX7005325, SRX7105477 0.0 Metagenome 3300069347 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_047-M-20170614-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069347 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 9607616 29877 50 7 99 12 0.0 Metagenome 3300035165 *Microbiome Permanent Draft Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom Soil microbial communities from SRUC Craibstone Estate, Aberdeen, Scotland, United Kingdom - 8_7.5_N_12_2 DOE Joint Genome Institute (JGI) 3300035165 Metagenome Analysis metaspades v. 3.13.0 Yes Yes graeme.nicol@ec-lyon.fr Graeme Nicol No Environmental Terrestrial Agricultural land Soil Unclassified soil 57.1863 -2.2145 1741523867 4231487 340 0 514 1 SRX8232733 Unrestricted 7.71 Metagenome 3300042684 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A57 University of California, Davis 3300042684 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 343749562 921152 396 9 751 6 0.0 Metagenome 3300045682 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Cordillera ecozone, Canada - Lake 13-526 Genome Quebec 3300045682 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 60.816837 -137.448355 791400637 1814514 359 89 632 191 0.0 Metagenome 3300001038 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN592 DOE Joint Genome Institute (JGI) 3300001038 Metagenome Analysis Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.070856 -96.582821 187950 651 27 0 37 0 SRX3311852 Unrestricted 0.0 Metagenome 3300040160 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Tropical grassland soil microbial communities from Potchefstroom, South Africa - 081_R1_022417 University of Maryland 3300040160 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Unclassified Soil Grasslands Tropical grassland soil -26.67755556 27.09225 8817768 16133 18 1 37 1 0.0 Metagenome 2077657004 *Microbiome Permanent Draft Wastewater treatment microbial communities from EBPR bioreactor at Univ of Illinois, Urbana Champaign, that are accumulating glycogen and are tetrad forming Tetrad forming microbial communities from wastewater bioreactor at Univ of Illinois, Urbana Champaign: TFO-assembly-454 University of Illinois, Urbana-Champaign 2077657004 Metagenome Analysis Newbler released per JGI data release policy No Yes t.hideyuki@gmail.com Hideyuki Tamaki No Engineered Wastewater Biological phosphorus removal Nutrient removal Bioreactor Wastewater treatment 40.114101 -88.227124 7956326 11811 0 0 0 0 0.0 Metagenome 3300028844 *Microbiome Permanent Draft Deep ocean water column microbial communities from Yap Trench, western Pacific Ocean Seawater microbial communities from Yap Trench, western Pacific Ocean - 37I-Yap-CTD02-4000m 2000bp_Newsun Novogene 3300028844 Metagenome Analysis IDBA_UD v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Ocean trench Marine Unclassified seawater 9.87 138.5 1327078810 1458704 407 63 388 52 0.0 Metagenome 3300014028 *Microbiome Permanent Draft Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 32 Chalmers University of Technology 3300014028 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 152107674 325442 138 3 282 2 SRX193525 0.0 Metagenome 3300018473 *Microbiome Permanent Draft Bovine feces microbial communities from beef and dairy calves in Davis, CA, USA Bovine feces microbial communities from dairy calf in Davis, CA, USA - DMJL001I re-assembly QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300018473 Metagenome Analysis megaHIT released by JGI data releasing policy Yes Yes jxnliu@ucdavis.edu Jinxin Liu No Host-associated Mammals Large intestine Digestive system Fecal feces 38.5449 -121.7405 197317934 345684 193 0 362 3 0.0 Metagenome 3300060294 *Microbiome Permanent Draft Soil microbial communities from experimental field in IAREC, Washington State University, Posser, WA, USA Lab enriched soil microbial communities from experimental field in IAREC, Washington State University, Posser, WA, USA - SM_0502_SR DOE Joint Genome Institute (JGI) 3300060294 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Agricultural land Soil Unclassified Soil 46.25 -119.73 181526907 190048 25 4 29 3 Unrestricted 398.91 Metagenome 3300000734 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 DOE Joint Genome Institute (JGI) 3300000734 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 60616743 171177 124 0 223 0 SRX4341709 Unrestricted 0.0 Metagenome 3300035118 *Microbiome Permanent Draft Populus rhizosphere microbial communities from soil in West Virginia and Oregon, United States Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 DOE Joint Genome Institute (JGI) 3300035118 Metagenome Analysis metaspades v. 3.13.0 Yes Yes erjohnston@ornl.gov Eric Johnston No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 46.1125 -122.987 1280125012 2973335 748 78 1312 131 SRX8289746 Unrestricted 7.13 Metagenome 3300027748 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_09_30cm (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027748 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31110364 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7392 -123.6308 802838034 1465380 555 16 959 21 SRX2728093 Unrestricted 0.0 Metagenome 3300070308 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_007-M-20180925-COMP-DNA1 3300070308 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 62364005 178698 114 0 269 2 0.0 Metagenome 3300044961 *Microbiome Permanent Draft Microbial mat bacterial communities from hot springs in Waikite Valley, Taupo Volcanic Zone, New Zealand Microbial mat bacterial communities from hot spring in Waikite Valley, New Zealand - LMW_ETR_NZ_2018_Waikite_S_1 DOE Joint Genome Institute (JGI) 3300044961 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes LMWARD@post.harvard.edu Lewis Ward No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats microbial mat -38.3276 176.3016 1010669165 1276703 404 5 511 14 Unrestricted 30.39 Metagenome 3300050458 *Microbiome Permanent Draft Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA Soil microbial communities from Mount St. Helens National Volcunic Monument, Washington, USA - W7W8 DOE Joint Genome Institute (JGI) 3300050458 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes rebecca.c.evans@wsu.edu Rebecca Evans No Environmental Terrestrial Unclassified Soil Unclassified soil 46.2369 -122.167 209847066 368057 187 34 350 41 Unrestricted 14.49 Metagenome 3300002912 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm DOE Joint Genome Institute (JGI) 3300002912 Metagenome Analysis Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 28223457 Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.73825 -123.6301 349924710 780090 306 6 550 5 SRX2562217 Unrestricted 0.0 Metagenome 3300031514 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_149 DOE Joint Genome Institute (JGI) 3300031514 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 330325487 613315 191 0 298 1 SRX5650791 Unrestricted 162.53 Metagenome 2081372004 *Microbiome Permanent Draft Oil reservoir microbial communities from Wyoming, USA Oil reservoir microbial communities from Wyoming, USA - Sample 548 Lawrence Berkeley National Laboratory 2081372004 Metagenome Analysis released per JGI data release policy No Yes oumason@lbl.gov, omason@fsu.edu Olivia U. Mason, Olivia Mason No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil reservoir 45.0 -105.0 25991097 26039 0 0 0 0 0.0 Metagenome 3300009502 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG DOE Joint Genome Institute (JGI) 3300009502 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes rstepanauskas@bigelow.org; sari.peura@slu.se Ramunas Stepanauskas; Sari Peura No Environmental Aquatic Lake Freshwater Unclassified Freshwater 61.2 25.1 6.05 1050035414 1771823 572 20 946 34 SRX2954898 Unrestricted 0.0 Metagenome 3300046834 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Bulk soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 soil DOE Joint Genome Institute (JGI) 3300046834 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 44.588014 -123.194065 7 491594564 922475 353 15 652 27 Unrestricted 20.32 Metagenome 3300005914 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKJ DOE Joint Genome Institute (JGI) 3300005914 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli, Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 523650583 1215082 294 76 422 113 SRX2746860 Unrestricted 0.0 Metagenome 7000000623 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 246515023 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000623 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 32104366 75196 0 0 0 0 0.0 Metagenome 3300042890 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME18Jan2011-rr0905 DOE Joint Genome Institute (JGI) 3300042890 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1052270910 1609618 310 61 388 64 Unrestricted 21.52 Metagenome 3300040482 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Steigerwaldt Land Services, Great Lakes, WI, USA - STEI_060-M-20160726-COMP-DNA1 Battelle Memorial Institute 3300040482 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 45.50894 -89.58637 3914251 11468 18 4 45 4 0.0 Metagenome 3300038706 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample15 King Abdulaziz City for Science and Technology (KACST) 3300038706 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 18.34 40.44 42452422 94730 57 1 99 0 SRX1097581 0.0 Metagenome 3300008614 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human subgingival plaque microbial communities from NIH, USA - visit 1, subject 763577454 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008614 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nckyrpides@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Nikos Kyrpides; Natalia Mikhailova No Host-associated Mammals: Human Oral cavity Digestive system Subgingival plaque Human 68003000 146235 71 2 139 1 0.0 Metagenome 3300010209 *Microbiome Permanent Draft Phototrophic microbial communities Intertidal zone phototrophic microbial communities from Little Sippewissett Salt Marsh, Woods Hole, MA - SCB14c Marine Biological Laboratory 3300010209 Metagenome Analysis CLC released per JGI data release policy No Yes jean.huang@olin.edu Jean Huang No Environmental Aquatic Intertidal zone Marine Salt marsh marine 41.5758508 -70.635807 66351519 82699 21 0 35 0 0.0 Metagenome 3300039070 *Microbiome Permanent Draft Freshwater lake viral communities from Lake Michigan, near Chicago, USA Freshwater lake viral communities from Lake Michigan, near Chicago, USA- Montrose140624.1V Genewiz Inc., Loyola University 3300039070 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.9668 -87.637 32069608 61733 28 0 31 0 0.0 Metagenome 3300015268 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_12JUL2016_LD1 MG DOE Joint Genome Institute (JGI) 3300015268 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Miscanthus phyllosphere 42.39 -85.37 113125300 210848 4 41 8 60 SRX3923446 Unrestricted 10.61 Metagenome 3300000495 *Microbiome Permanent Draft Lentic microbial communities from White Lake grasslands, BC, Canada Lentic microbial communities from White Lake grasslands, BC, Canada Pennsylvania State University 3300000495 Metagenome Analysis released per PI No Yes tlh42@psu.edu Trinity No Environmental Aquatic Lentic Freshwater Unclassified Lentic 49.2833 -119.5833 22541773 59293 57 3 66 2 0.0 Metagenome 3300042461 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 DOE Joint Genome Institute (JGI) 3300042461 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.201 -97.9447 707220774 1770906 650 52 1216 103 Unrestricted 8.13 Metagenome 3300000920 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and M1 (2) DOE Joint Genome Institute (JGI) 3300000920 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 52746859 81671 39 1 67 0 SRX3311626 Unrestricted 0.0 Metagenome 3300069426 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Southeast, FL, USA - OSBS_002-M-20130726-COMP-DNA1 re-annotation Argonne National Laboratory 3300069426 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 29.68927 -81.99343 9096388 24928 38 8 54 9 0.0 Metagenome 3300011131 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01403 Weill Cornell Medical College 3300011131 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.59 -73.97 27727556 30002 13 0 21 0 SRX823343 0.0 Metagenome 3300065629 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 812 in Tilley, Alberta, Canada - S00JY_0053 Microbiome Insights 3300065629 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 50.2538415 -111.39339 11404516 17028 21 0 45 0 0.0 Metagenome 3300026175 *Microbiome Permanent Draft Army ant gut microbial communities Army ant gut microbial communities from Eciton burchelli, Monteverde, Costa Rica - colony MVEbp1 University of California, Berkeley 3300026175 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy Yes Yes jar337@drexel.edu Jacob Russell No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Army ant gut 10.3 -84.8 214601528 233394 21 364 18 1478 0.0 Metagenome 3300000200 *Microbiome Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 48 08/11/10 150m DOE Joint Genome Institute (JGI) 3300000200 Metagenome Analysis released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 64731131 145636 46 0 100 2 Unrestricted 0.0 Metagenome 3300042250 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D316_3 DOE Joint Genome Institute (JGI) 3300042250 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 207180978 299929 171 9 232 13 Unrestricted 68.59 Metagenome 3300010929 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 00 mira Center for Advanced Technologies in Genomics, Sao Paulo University 3300010929 Metagenome Analysis MIRA v. 4.0.2 released by JGI data releasing policy No Yes joao.c.setubal@gmail.com Joao Setubal No Engineered Solid waste Composting Zoo waste Unclassified Compost -23.651072 -46.620675 11805392 19592 36 3 48 3 0.0 Metagenome 3300045001 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Soil microbial communities from semiarid region near Thies, Senegal - COC4D DOE Joint Genome Institute (JGI) 3300045001 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Environmental Terrestrial Unclassified Soil Agricultural land Soil 14.75 -16.85 1261105123 2179675 527 27 963 42 Unrestricted 15.16 Metagenome 3300015215 *Microbiome Permanent Draft Microbial mat communities from high arctic lakes Freshwater microbial mat microbial communities from Canadian High Arctic Lake, Ward Hunt Island , Canada - Sample WHb Laval University 3300015215 Metagenome Analysis IDBA_UD released by Adrien Vigneron No Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Subglacial lake Freshwater Unclassified microbial mat 83.079722 -74.138056 912092833 3797184 1006 162 1922 303 0.0 Metagenome 7000000679 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 2, subject 764305738 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 7000000679 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 3137692 5917 0 0 0 0 SRX098550, SRX024152 0.0 Metagenome 3300029093 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 18_12M Beijing Genomics Institute (BGI) 3300029093 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.676097 12.568337 77710043 80082 55 0 83 0 ERX490978 0.0 Metagenome 3300027670 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Nasutitermes corniger crop gut microbial community from laboratory colony in Florida, USA - Nc150C (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027670 Metagenome Analysis spades v. 3.11.1 Yes Yes brune@mpi-marburg.mpg.de Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 26.0625 -80.2332 801084990 987899 14 6 21 8 SRX2553489 Unrestricted 0.0 Metagenome 3300035027 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - T5-14 Autonomous University of Barcelona 3300035027 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 31834025 130493 299 0 535 0 0.0 Metagenome 3300008420 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160218816 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008420 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 133686564 186528 96 0 128 0 0.0 Metagenome 3300048578 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Wood chips microbial communities from bioreactor in Golden, Colorado, USA - AB_Metals_3 DOE Joint Genome Institute (JGI) 3300048578 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Unclassified Wood chips 39.7555 -105.2211 928724509 1064651 367 1 440 1 Unrestricted 51.95 Metagenome 3300008995 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1551A-3 DOE Joint Genome Institute (JGI) 3300008995 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.187 -123.8837 191692667 388974 366 143 589 212 SRX2753727 Unrestricted 4.3 Metagenome 3300017437 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP2 (SPADES assembly) (version 2) DOE Joint Genome Institute (JGI) 3300017437 Metagenome Analysis MEGAHIT v. 1.0.3 released Yes Yes rstepanauskas@bigelow.org; duane.moser@dri.edu Ramunas Stepanauskas; Duane Moser No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Thermal springs 36.96 -116.72 619353258 1726647 923 36 1748 68 SRX2948714 Unrestricted 0.0 Metagenome 3300028436 *Microbiome Permanent Draft Extreme environments viral communities from various locations Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - Kryos LI F3 DOE Joint Genome Institute (JGI) 3300028436 Metagenome Analysis spades v. 3.11.1 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Bathypelagic Marine Unclassified seawater 34.9283 22.0216 58954052 160876 4 5 8 6 SRX5249175 Unrestricted 110.46 Metagenome 3300014117 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In5P SAF170 SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300014117 Metagenome Analysis SPAdes 3.10.0 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1 -118.1 3454456 5230 5 0 1 1 Unrestricted 0.0 Metagenome 3300044825 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from East Fork Poplar Creek, Oak Ridge, Tennessee, USA - eastforkpoplarcreek_2019_sw_WHONDRS-S19S_0039 (Illumina-amplified) DOE Joint Genome Institute (JGI) 3300044825 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 35.9662 -84.3573 487501232 841392 243 25 348 32 Unrestricted 19.84 Metagenome 3300019926 *Microbiome Permanent Draft Hypersaline water viral communities from Tuz Lake and Camalt? Saltern, Turkey Hypersaline water viral communities from a salt crystallizer pond in Camalti Saltern, Izmir, Turkey ? 5ka University of Alicante 3300019926 Metagenome Analysis IDBA_1.1.1 PRE_correction released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Unclassified High salinity water of salt crystallization pond 38.49 26.92 59580958 182069 2 0 6 0 0.0 Metagenome 3300007132 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit number 3 of subject 763536994 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007132 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 52576659 103416 53 0 84 1 0.0 Metagenome 3300033413 *Microbiome Permanent Draft Wetland soil microbial communities from various locations Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT DOE Joint Genome Institute (JGI) 3300033413 Metagenome Analysis spades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified soil 41.3777 -82.5117 4461513415 10761247 2597 24 4616 52 SRX6413053 Unrestricted 10.91 Metagenome 2035265000 *Microbiome Permanent Draft Freshwater microbial communities from Swedish Lakes Freshwater microbial communities from Swedish Lakes - surface of Lake Erken Royal Institute of Technology 2035265000 Metagenome Analysis released per PI No Yes stebe@ebc.uu.se, stefan.bertilsson@slu.se Stefan Bertilsson No Environmental Aquatic Lentic Freshwater Unclassified Freshwater 59.84 18.63 211804473 509658 138 0 258 0 0.0 Metagenome 3300018429 *Microbiome Permanent Draft Populus soil microbial communities from riparian zone of different river systems in the western United States Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T DOE Joint Genome Institute (JGI) 3300018429 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jen.schweitzer@utk.edu Jennifer Schweitzer No Environmental Terrestrial Riparian zone Soil Unclassified soil 44.4668 -109.6253 4645347179 10911738 3090 101 5252 173 SRX4808932 Unrestricted 5.79 Metagenome 3300005695 *Microbiome Finished Mouse gut microbial communities from Washington University in St Louis, Missouri, USA, of lean and obese mice Mouse gut microbial communities from Washington University in St Louis, Missouri, USA - Obese Mouse 1 Gut Washington University in St. Louis 3300005695 Metagenome Analysis Newbler No Yes jgordon@wustl.edu Human Gut Community Users Yes 17183312 Host-associated Mammals Large intestine Digestive system Cecum Mouse gut 38.63055 -90.194664 2359017 4529 0 0 0 0 0.0 Metagenome 3300037146 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPON1-2-D DOE Joint Genome Institute (JGI) 3300037146 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3569 19.0502 896262017 1683560 294 12 554 27 SRX8164190 Unrestricted 8.8 Metagenome 3300025716 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-211 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025716 Metagenome Analysis spades v. 3.11.1 Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.290565 -156.788622 462828249 1001813 387 1 564 6 SRX1990909 Unrestricted 0.0 Metagenome 3300026083 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_SurfaceA_ad_5m_LV_A (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026083 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 390671506 978986 291 4 515 11 SRX2775729 Unrestricted 0.0 Metagenome 3300060854 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Guanica State Forest and Biosphere Reserve, Puerto Rico - GUAN_007-M-20210922-comp-1 DOE Joint Genome Institute (JGI) 3300060854 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Tropical forest Soil Unclassified Terrestrial soil 17.972832 -66.857711 1461123232 2562734 396 7 792 10 Unrestricted 19.78 Metagenome 3300036784 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in New South Wales, Australia - Pf_5 DOE Joint Genome Institute (JGI) 3300036784 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil -33.6 150.0 1161801534 1999568 346 34 548 60 SRX8384031 Unrestricted 16.38 Metagenome 3300046505 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 AvCe-C(2) 30-34 DOE Joint Genome Institute (JGI) 3300046505 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3548 19.0434 869313877 1272293 322 0 485 1 Restricted 14.5 Metagenome 3300003237 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06K1-12 DOE Joint Genome Institute (JGI) 3300003237 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 354926 1199 35 3 54 1 SRX2576175 Unrestricted 0.0 Metagenome 3300060429 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210604_08_17 DOE Joint Genome Institute (JGI) 3300060429 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 768620857 1171438 297 150 373 221 Unrestricted 26.33 Metagenome 3300017758 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 32 SPOT_SRF_2012-05-30 DOE Joint Genome Institute (JGI) 3300017758 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 418785175 990308 44 33 118 49 SRX7207413, SRX7207412 Unrestricted 0.0 Metagenome 3300026839 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 52 (SPAdes) DOE Joint Genome Institute (JGI) 3300026839 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 52675291 116823 49 0 91 0 SRX4340975 Unrestricted 0.0 Metagenome 3300002303 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns DOE Joint Genome Institute (JGI) 3300002303 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 29072272 71476 47 8 114 9 SRX1988272 Unrestricted 0.0 Metagenome 3300034685 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from deep shales in Oklahoma, United States - K-7-5 DOE Joint Genome Institute (JGI) 3300034685 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back fracking water 35.812 -98.262 245194943 360800 273 1 317 0 SRX8136140 Unrestricted 214.14 Metagenome 3300035236 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from the Northeast subarctic Pacific Ocean - P4_June_2018_1400m DOE Joint Genome Institute (JGI) 3300035236 Metagenome Analysis metaspades v. 3.13.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Seawater 48.65 -126.6666 463937324 1108676 373 28 639 48 SRX8198544 Unrestricted 15.01 Metagenome 3300014506 *Microbiome Permanent Draft Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0160 : 32 days incubation Battelle Memorial Institute, Gulf Coast Restoration Organization 3300014506 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Marine 63.43 10.43 9629986 26255 23 8 31 8 0.0 Metagenome 3300025088 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025088 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650, 27774985 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.534762 -107.782602 314404630 573984 401 5 703 6 SRX1085371, SRX2233511 Unrestricted 0.0 Metagenome 3300064945 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 746 in Carstairs, Alberta, Canada - S00JY_0257 Microbiome Insights 3300064945 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 51.29325538 -114.0540409 11214931 17569 9 0 27 0 0.0 Metagenome 7000000733 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 675950834 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000733 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 3532726 5474 0 0 0 0 0.0 Metagenome 3300012127 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF 2006 #1 DOE Joint Genome Institute (JGI) 3300012127 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5627 78.1882 110118418 219074 58 3 115 4 SRX3242178 Unrestricted 0.0 Metagenome 3300049720 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 E2 1-5 DOE Joint Genome Institute (JGI) 3300049720 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3534 19.0467 261640038 444439 261 22 448 44 Restricted 16.04 Metagenome 3300042815 *Microbiome Permanent Draft Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA Fresh water mixed with fracking chemicals microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 NMDC pilot DOE Joint Genome Institute (JGI) 3300042815 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 30510171 Engineered Industrial production Input fracking water Chemical products Unclassified Fresh water mixed with fracking chemicals 40.178 -81.073 214220415 431499 157 19 247 41 SRX2925625 0.0 Metagenome 3300002244 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1 DOE Joint Genome Institute (JGI) 3300002244 Metagenome Analysis Yes Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Unclassified Corn, switchgrass and miscanthus rhizosphere 42.3948 -85.3738 315092440 907463 895 75 1707 114 SRX2554582 Unrestricted 0.0 Metagenome 3300005424 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV49 DOE Joint Genome Institute (JGI) 3300005424 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 719915319 1709163 826 11 1408 10 SRX2781557 Unrestricted 0.0 Metagenome 3300050291 *Microbiome Permanent Draft Rock-associated cryptoendolithic microbial communities from Antarctica Rock-associated cryptoendolithic microbial communities from Antarctica - FICUS_Selbmann_52 DOE Joint Genome Institute (JGI) 3300050291 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes selbmann@unitus.it Laura Selbmann No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified Rocks -75.482 159.591 492974806 782641 164 17 236 19 SRX18235982 Restricted 24.09 Metagenome 3300042868 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jun2000-rr0365 DOE Joint Genome Institute (JGI) 3300042868 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1053069831 1677233 258 22 396 24 Unrestricted 22.2 Metagenome 3300005859 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPADES assembly) (version 2) DOE Joint Genome Institute (JGI) 3300005859 Metagenome Analysis SPADES v3.5.0 Yes Yes nnivanova@lbl.gov, binskeep@montana.edu; jim.fredrickson@pnnl.gov Natasha Ivanova, William P. Inskeep; Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.376 -110.69 153229826 288266 95 1 114 1 SRX2553562 Unrestricted 0.0 Metagenome 3300021500 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-5-6_MG DOE Joint Genome Institute (JGI) 3300021500 Metagenome Analysis spades v. 3.11.1-check Yes Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.0114 -110.5956 159679707 329643 165 1 280 5 SRX3982303 Unrestricted 13.83 Metagenome 3300002422 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP02-I3 3300002422 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300011963 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00702 Weill Cornell Medical College 3300011963 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.85 -73.92 52244573 87765 21 0 46 0 SRX822669 0.0 Metagenome 3300023030 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Soil microbial communities from Bohemian Forest, Czech Republic - CSU2 DOE Joint Genome Institute (JGI) 3300023030 Metagenome Analysis spades v. 3.11.1 Yes Yes baldrian@biomed.cas.cz; kostelecke.uzeniny@seznam.cz Petr Baldrian; Tomas Vetrovsky No Environmental Terrestrial Temperate forest Soil Unclassified soil 49.044 13.617 65501133 165367 81 22 152 19 SRX4456284 Unrestricted 8.87 Metagenome 3300036542 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8CB15 DOE Joint Genome Institute (JGI) 3300036542 Metagenome Analysis metaspades v. 3.13.0 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 178038267 469266 324 15 530 22 SRX8379536 Unrestricted 5.57 Metagenome 3300026520 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake in Antarctica - Synechococcus sp. Ace-P (PacBio error correction) DOE Joint Genome Institute (JGI) 3300026520 Metagenome Analysis metalrec/blasr v. metalrec version 1.0.2/blasr 1.3.1 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline lake -68.4717 78.1877 600685569 737129 420 1 440 0 Unrestricted 30.5 Metagenome 3300000624 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 12AUG2008 hypolimnion DOE Joint Genome Institute (JGI) 3300000624 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300017565 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched backyard soil microbial communities from Emeryville, California, USA - eDNA 3rd pass 30_C Kraft BY (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300017565 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes JMGladden@lbl.gov John Gladden No Environmental Terrestrial Unclassified Soil Unclassified soil 37.83 -122.29 919071438 1607917 1175 75 1523 102 SRX4808942, SRX4808943 Unrestricted 0.0 Metagenome 3300033979 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003 DOE Joint Genome Institute (JGI) 3300033979 Metagenome Analysis spades v. 3.13.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.0995 -89.4045 1148384393 2443213 710 165 1176 295 SRX7621629 Unrestricted 11.03 Metagenome 3300022689 *Microbiome Permanent Draft Carpinteria Salt Marsh Metagenomes 2014 to 2017 Marine microbialite microbial communities from marsh intertidal zone in Carpinteria, CA, United States - T5 University of California, Irvine 3300022689 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes gilberto.flores@csun.edu Gilberto Flores No Environmental Aquatic Intertidal zone Marine Microbialites Microbialites 34.401 -119.534 347194074 349288 83 10 91 14 0.0 Metagenome 3300040198 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONZ_002-M-20160712-COMP-DNA1 Battelle Memorial Institute 3300040198 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.10077 -96.56309 10133821 31033 49 3 85 1 0.0 Metagenome 3300011806 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00816 Weill Cornell Medical College 3300011806 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.76 -73.96 24334150 38831 14 0 14 0 SRX822782 0.0 Metagenome 3300071081 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, California, USA - SJER_046-M-20180222-COMP-DNA1 3300071081 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 3993076 12080 54 5 104 8 0.0 Metagenome 3300045777 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Permafrost peat microbial communities from Stordalen, Sweden - G1-R2-A DOE Joint Genome Institute (JGI) 3300045777 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.048 377174512 779204 196 35 330 62 Unrestricted 8.77 Metagenome 3300002111 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A4-10 DOE Joint Genome Institute (JGI) 3300002111 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 4639878 15321 42 0 79 1 SRX1990505 Unrestricted 0.0 Metagenome 3300013361 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01498 Weill Cornell Medical College 3300013361 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal/plastic 40.75 -73.99 21448307 31750 16 0 29 0 SRX823374 0.0 Metagenome 3300016263 *Microbiome Permanent Draft Bacteria community in surface water in Singapore Freshwater bacterial communities from the surface of water reservoir in Singapore - WB_Site 1, Aug Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300016263 Metagenome Analysis CLC v8.0.3 released by JGI data releasing policy No Yes a0133534@u.nus.edu Xiaoqiong GU No Environmental Aquatic Lake Freshwater Unclassified freshwater 1.28 103.87 113818338 168279 23 2 26 4 0.0 Metagenome 3300025556 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragA_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025556 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.080353 -122.108833 191278368 381680 213 1 333 1 SRX7225230 Unrestricted 0.0 Metagenome 3300008885 *Microbiome Permanent Draft Microbial communities associated with green microalga Chlorella saccharophila, Germany - (MZCH: 10155) Microbial communities associated with green microalga Chlorella saccharophila, Germany - (MZCH: 10155) HPI Heinrich-Pette-Institut 3300008885 Metagenome Analysis IDBA_UD1.1.1 https://www.frontiersin.org/articles/10.3389/fmicb.2017.01941/full No Yes wolfgang.streit@uni-hamburg.de Wolfgang Streit No Host-associated Microbial Unclassified Bacteria Unclassified Chlorella sacherophilia (MZCH 10155) associated 53.560155 9.859606 174773623 237355 18 1 38 1 0.0 Metagenome 3300048849 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD3 DOE Joint Genome Institute (JGI) 3300048849 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.347657 -119.2808 703997173 971483 150 98 182 111 Unrestricted 43.38 Metagenome 3300027392 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius loisae LIZARD ISLAND.1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027392 Metagenome Analysis spades v. 3.11.1 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Digestive tube Digestive system Extracellular symbionts Marine gutless worms symbiont 51.321602 12.394572 505291616 502053 14 2 23 5 SRX2712110 Unrestricted 0.0 Metagenome 3300027974 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027974 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh Yes 29921005 Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 48.2311 -71.2508 644935380 1330375 343 55 568 102 SRX2996489 Unrestricted 0.0 Metagenome 3300020504 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 09AUG2011 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020504 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 43.098333 -89.405278 82525929 178723 83 18 140 31 SRX1989661 Unrestricted 0.0 Metagenome 7000000257 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 765640925 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000257 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 1732995 1717 0 0 0 0 0.0 Metagenome 3300038839 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Natural salt marsh sediment microbial communities from Abbotts Hall, United Kingdom - S AHNM 3A University of York 3300038839 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Natural salt marsh sediment 51.7865 0.86085 68633131 173657 124 0 252 0 0.0 Metagenome 3300049028 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - D4_B_RS (version 2) DOE Joint Genome Institute (JGI) 3300049028 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 447498387 1016622 595 7 1081 17 Unrestricted 0.0 Metagenome 3300045590 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - DMB5_5SRT_B DOE Joint Genome Institute (JGI) 3300045590 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35894622 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0339 -89.3564 145545305 201260 164 1 170 2 SRX12654480 Unrestricted 97.17 Metagenome 3300025780 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D1 (SPAdes) DOE Joint Genome Institute (JGI) 3300025780 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov; jzz0026@lbl.gov Susannah Tringe; Jinglie Zhou No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.05246563 -121.76914021 108677120 238290 177 2 321 0 SRX7142753 Unrestricted 0.0 Metagenome 3300003199 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment Column 2K1-30 454 Life Sciences 3300003199 Metagenome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.34876 40.487145 6-8 0 0 0 0 0 0 0.0 Metagenome 3300031812 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer DOE Joint Genome Institute (JGI) 3300031812 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5341 -110.798 741524262 1610125 333 0 460 0 SRX6411846 Unrestricted 113.92 Metagenome 3300007105 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 764447348 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007105 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 127938743 177237 106 0 146 0 0.0 Metagenome 3300039379 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 585_4M Beijing Genomics Institute (BGI) 3300039379 Metagenome Analysis Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 17607719 29446 17 0 28 0 ERX491236 0.0 Metagenome 3300009804 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N3_30_40 DOE Joint Genome Institute (JGI) 3300009804 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37379502 -119.2722385 125046392 294124 188 5 384 11 SRX2523179 Unrestricted 0.0 Metagenome 3300046532 *Microbiome Permanent Draft Seawater and ice microbial communities from Arctic Ocean Seawater microbial communities from Arctic Ocean - MOSAiC PS122_328 DOE Joint Genome Institute (JGI) 3300046532 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Seawater 87.5518 102.0858 1832714939 2692203 572 355 769 432 Unrestricted 21.62 Metagenome 3300013190 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100594 University of Pennsylvania 3300013190 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 32379399 56733 31 3 43 5 SRX756160 0.0 Metagenome 3300069461 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Ozarks Complex, AL, USA - TALL_006-M-20160822-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069461 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Temperate forest Soil Bulk soil Terrestrial soil 32.95046 -87.39327 29387198 93070 99 7 160 13 0.0 Metagenome 3300035103 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B5.2_Sample5.Rodeo2.Well1132 DOE Joint Genome Institute (JGI) 3300035103 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 247305843 417891 188 1 351 0 SRX8354172 Unrestricted 31.17 Metagenome 3300014630 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01365 Weill Cornell Medical College 3300014630 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.67 -73.98 21935242 29206 14 0 14 0 SRX823305 0.0 Metagenome 3300043022 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver stomach microbial communities from Maple Ridge, British Columbia, Canada - Beaver6Stomach1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043022 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Stomach Digestive system Unclassified stomach 49.18 -122.54 50042833 90346 8 11 9 16 SRX8346454 Unrestricted 93.0 Metagenome 3300027998 *Microbiome Permanent Draft Soil microbial communities from hillslopes of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 2-2-E_D DOE Joint Genome Institute (JGI) 3300027998 Metagenome Analysis spades v. 3.11.1 Yes Yes laurameredith@email.arizona.edu Laura Meredith No Engineered Artificial ecosystem Soil Mesocosm Unclassified soil 32.5788 -110.8509 21893344 64190 33 3 61 1 SRX5245816 Unrestricted 124.99 Metagenome 3300028542 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 7 Selected contigs with viral hallmark genes 2 Autonomous University of Barcelona 3300028542 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 4173712 5869 0 0 0 0 0.0 Metagenome 3300038520 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_042 - TARA_R100000149 CEA Genoscope 3300038520 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine 6.0001 73.8955 146494892 312871 21 0 39 0 0.0 Metagenome 3300027481 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A2-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300027481 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 29687619 97175 86 4 166 3 SRX2576251 Unrestricted 0.0 Metagenome 3300030376 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_102 - TARA_R100001463 CEA Genoscope 3300030376 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -5.2669 -85.2732 242988923 466533 13 0 15 0 0.0 Metagenome 3300011629 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00157 Weill Cornell Medical College 3300011629 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.86 -73.91 30328707 43344 13 0 23 0 SRX822136 0.0 Metagenome 3300029732 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37878 Beijing Genomics Institute (BGI) 3300029732 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 169064199 213321 145 1 214 0 0.0 Metagenome 3300004166 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 39_LOW7 DOE Joint Genome Institute (JGI) 3300004166 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 80829136 172319 55 0 95 0 SRX2720571 Unrestricted 0.0 Metagenome 3300069250 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Great Basin, Onaqui, Utah, USA - ONAQ_005-M-20210527-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069250 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Shrubland Soil Unclassified Terrestrial soil 40.180775 -112.431854 1325614622 3319821 1214 17 2435 32 0.0 Metagenome 3300003513 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS828_N3Area_DNA 3300003513 Metagenome Analysis CLC Genomics workbench released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.944 -129.985163 60945433 135876 55 6 118 10 0.0 Metagenome 3300001620 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF032 DOE Joint Genome Institute (JGI) 3300001620 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 1437576 4161 17 1 36 5 SRX2014381 Unrestricted 0.0 Metagenome 3300045246 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_1_E DOE Joint Genome Institute (JGI) 3300045246 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 164694916 200023 105 1 134 1 Unrestricted 106.13 Metagenome 3300052931 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Colorado, USA - BV_C1_S2 DOE Joint Genome Institute (JGI) 3300052931 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 40.98905 -106.61082 101599079 195852 195 41 370 47 Unrestricted 48.08 Metagenome 3300056691 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.5W.12 SIP fraction DOE Joint Genome Institute (JGI) 3300056691 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 161647453 286731 185 31 329 60 Unrestricted 15.47 Metagenome 3300012795 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Phycosphere-associated microbial communities from algal ponds in Kailua-Kona, Hawaii, USA - Cellana AP2-5-5 metagenome pilot DOE Joint Genome Institute (JGI) 3300012795 Metagenome Analysis MEGAHIT v. 1.0.6 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Engineered Artificial ecosystem Algae raceway pond Aquaculture Unclassified phycosphere 19.7341 -156.0529 42977876 69852 25 6 29 3 SRX7204054 Unrestricted 0.0 Metagenome 3300044671 *Microbiome Permanent Draft Rhizosphere and soil microbial communities from millet plants in semiarid region near Thies, Senegal Roots microbial communities from millet plant in semiarid region near Thies, Senegal - COA1E DOE Joint Genome Institute (JGI) 3300044671 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes lauramason326@gmail.com Richard Dick No Host-associated Plants Unclassified Roots Unclassified Root 14.75 -16.85 808983709 1226045 25 37 60 64 Unrestricted 26.86 Metagenome 3300014934 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 560_12M Beijing Genomics Institute (BGI) 3300014934 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 88796312 118739 54 0 73 0 ERX491203 0.0 Metagenome 3300001343 *Microbiome Permanent Draft Cubitermes and Nasutitermes termite gut microbial communities from Max Planck Institute for Terrestrial Microbiology, Germany Nasutitermes corniger P5 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P5 DOE Joint Genome Institute (JGI) 3300001343 Metagenome Analysis Yes Yes brune@mpi-marburg.mpg.de Andreas Brune Yes 26607965 Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 26.0625 -80.2332 360689695 1150329 31 14 57 5 SRX2553509 Unrestricted 0.0 Metagenome 3300039778 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Great Smoky Mountains National Park, TN, USA - GRSM_016-O-20160718-COMP-DNA1 Battelle Memorial Institute 3300039778 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.68896 -83.50195 37213679 97021 90 11 176 11 0.0 Metagenome 3300001204 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 DOE Joint Genome Institute (JGI) 3300001204 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 8884293 27896 105 8 191 18 SRX3311925 Unrestricted 0.0 Metagenome 3300047669 *Microbiome Permanent Draft Seawater and ice microbial communities from Arctic Ocean Seawater microbial communities from Arctic Ocean - MOSAiC PS122_327_328_pool DOE Joint Genome Institute (JGI) 3300047669 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Seawater 87.5518 102.0858 1217674940 1813153 436 249 616 311 Unrestricted 19.47 Metagenome 3300012003 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A20_80cm_0.25M University of Tennessee 3300012003 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 327204874 680515 111 8 206 8 SRX710571 0.0 Metagenome 3300021091 *Microbiome Permanent Draft Freshwater microbial communities from Lake Tanganyika, Tanzania Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m DOE Joint Genome Institute (JGI) 3300021091 Metagenome Analysis spades v. 3.10.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified freshwater lake -4.8915 29.586 1428823714 2251421 411 99 642 130 SRX4821686 Unrestricted 44.29 Metagenome 3300043651 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 357-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043651 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9534 -107.0697 427663262 1173093 418 14 825 22 Unrestricted 7.46 Metagenome 3300013326 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100774 University of Pennsylvania 3300013326 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 8131276 18807 15 10 32 15 SRX756078 0.0 Metagenome 3300035524 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Oil reservoir microbial communities from oil well in Texas, United States - B1.1_Sample1.Rodeo1.Well667 DOE Joint Genome Institute (JGI) 3300035524 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Terrestrial Oil well Deep subsurface Unclassified oil reservoir 31.546 -102.9 116600525 191520 124 0 176 1 SRX8346909 Unrestricted 102.73 Metagenome 3300037334 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 1-5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037334 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0471 591317331 1389315 499 13 862 24 SRX4415328, SRX8128000 Unrestricted 0.0 Metagenome 3300001924 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Tikehau Lagoon, Polynesia Archipelagos - GS050 J. Craig Venter Institute (JCVI) 3300001924 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine -15.277778 -148.22444 467458 887 1 0 0 0 0.0 Metagenome 3300022540 *Microbiome Permanent Draft Abyssal plain sediment microbial communities from Eastern Gulf of Mexico, Atlantic Ocean Abyssal plain sediment microbial communities from Eastern Gulf of Mexico, Atlantic Ocean - EGM029 re-assembly University of Calgary 3300022540 Metagenome Analysis SPAdes v. 3.11.0 released by JGI data releasing policy Yes Yes dongxiyang@tio.org.cn Xiyang DONG No Environmental Aquatic Oil seeps Marine Unclassified Abyssal plain sediment 25.3043 -90.0659 738727604 1249405 248 6 386 8 0.0 Metagenome 3300036436 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - P.F.S.T-25 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300036436 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 109224086 217407 126 4 256 5 SRX4550137, SRX7705822 Unrestricted 0.0 Metagenome 3300004773 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA1M DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300004773 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu, tmcmahon@engr.wisc.edu; shaomei.he@gmail.com Katherine McMahon, Katherine McMahon; Shaomei He No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 535198830 1305715 494 123 796 171 SRX2518393 Unrestricted 0.0 Metagenome 7000000092 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 1, subject 508703490 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000092 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 3009368 2907 0 0 0 0 0.0 Metagenome 3300006904 *Microbiome Permanent Draft Populus root and rhizosphere microbial communities from Tennessee, USA Bulk soil microbial communities from a Populus tree surrounding site in Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3 DOE Joint Genome Institute (JGI) 3300006904 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes pelletierda@ornl.gov Dale Pelletier No Environmental Terrestrial Tree plantation Soil Unclassified Bulk soil 35.8444 -83.9599 6201916822 16946939 3522 110 6013 194 SRX2842786 Unrestricted 0.0 Metagenome 3300007059 *Microbiome Permanent Draft Biogas reactor microbial communities from Swedish University of Agricultural Sciences, Alnarp, Sweden, and As, Norway that are enriched on cellulose Biogas reactor microbial communities from As, Norway - D1BOC_Hiseq_PacBio7C99_UnincorpCap3 undefined Clostridium group Genomics Core Facility (Oslo University Hospital and University of Oslo) 3300007059 Metagenome Analysis Cap3 IDBA Mira released per JGI data release policy No Yes phillip.b.pope@gmail.com Phillip Pope, Phil B. Pope No Engineered Bioreactor Biogas Anaerobic Unclassified Biogas reactor 59.6 10.8 74021442 170059 225 0 258 0 0.0 Metagenome 3300012846 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched pill bug-associated microbial communities from UW Madison campus, WI, USA - HID1972K_E0 MG DOE Joint Genome Institute (JGI) 3300012846 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 98495348 152437 121 2 184 3 SRX3564459 Unrestricted 0.0 Metagenome 3300022296 *Microbiome Permanent Draft Lab enrichment of oil well rock microbial communities from petroleum reservoir, Carmopolis, SE, Brazil - Rocha G46 - 966 Lab enrichment of oil well rock microbial communities from petroleum reservoir, Carmopolis, SE, Brazil - Rocha G46 - 966 Federal University of Rio Grande do Norte 3300022296 Metagenome Analysis Geneious v9.04 released by JGI data releasing policy No Yes lfagnez@ufrnet.br Lucymara Agnez-Lima No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil reservoir sediment -10.6453 -36.9891 790916610 2958365 6371 0 12111 135 0.0 Metagenome 3300006224 *Microbiome Permanent Draft Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG DOE Joint Genome Institute (JGI) 3300006224 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes christopher.s.miller@ucdenver.edu Christopher Miller, Christopher S. Miller Yes 29146959 Environmental Aquatic Wetlands Freshwater Unclassified Freshwater wetlands 41.384 -82.513 5559820833 15697153 4176 10 7488 25 SRX2839627 Unrestricted 0.0 Metagenome 3300003753 *Microbiome Permanent Draft Cyanobacterial communities from the Joint Genome Institute, California, USA Cyanobacterial communities from the Joint Genome Institute, California, USA - FECB-21 DOE Joint Genome Institute (JGI) 3300003753 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes mhess@lbl.gov, mhess@ucdavis.edu Matthias Hess No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Cyanobacterial 37.9313884 -122.0239394 28761668 34926 12 3 10 2 SRX7697641 Unrestricted 0.0 Metagenome 3300070836 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Toolik Field Station, Alaska, USA - TOOL_001-O-20180807-COMP-DNA1 3300070836 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Soil 698408 2494 14 0 19 1 0.0 Metagenome 3300027888 *Microbiome Permanent Draft Marine sediment microbial communities from White Oak River estuary, North Carolina Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-30_32 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027888 Metagenome Analysis spades v. 3.11.1 Yes Yes acidophile@gmail.com Brett Baker Yes 26824177 Environmental Aquatic Intertidal zone Marine Estuary: Microbial mat Marine sediment 34.640199 -77.109447 2093100725 4192278 1124 2 1883 8 SRX2554360 Unrestricted 0.0 Metagenome 3300020123 *Microbiome Permanent Draft Soil bacterial communities from Switchgrass agricultural field in Lux Arbor, Michigan, USA Soil bacterial communities from Switchgrass agricultural field in Lux Arbor, Michigan, USA - site U4, unfertilized Michigan State University 3300020123 Metagenome Analysis Megahit released by JGI data releasing policy Yes Yes aarongaroutte@gmail.com Aaron J. Garoutte No Environmental Terrestrial Unclassified Soil Agricultural land Soil 42.4891 -85.4641 5325474839 8941563 1312 54 2110 110 0.0 Metagenome 3300047408 *Microbiome Permanent Draft Forest soil microbial communities from boreal-temperate forests in Minnesota, USA Forest soil microbial communities from Cloquet Forestry Center, Minnesota, USA - Cloquet AMB WO D3 DOE Joint Genome Institute (JGI) 3300047408 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pankaj.trivedi@colostate.edu Pankaj Trivedi No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 46.31 -92.3 542895310 944445 216 19 416 22 Unrestricted 0.0 Metagenome 3300048594 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Soil microbial communities from Washington Gulch, Colorado, USA - LS_C_07192018 DOE Joint Genome Institute (JGI) 3300048594 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 38.95 -107.03 1571811612 2793686 575 45 949 55 Unrestricted 16.78 Metagenome 3300028784 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121 DOE Joint Genome Institute (JGI) 3300028784 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.920406 -106.94828662 1223192610 2940046 490 12 844 16 SRX5354620 Unrestricted 10.93 Metagenome 3300025341 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Archaeal communities from Yellowstone National Park, Wyoming, USA - Archaeal consortia 1 (NAG2) MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025341 Metagenome Analysis spades v. 3.11.1 Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Unclassified Thermal springs Unclassified Thermal springs 44.376 -110.69 8786169 10560 3 0 3 0 SRX2577304 Unrestricted 0.0 Metagenome 3300049473 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Florida, USA - sharkriverslough_2019_sed_WHONDRS-S19S_0042 DOE Joint Genome Institute (JGI) 3300049473 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 25.40976 -80.96434 1039089969 1984446 814 5 1580 6 Unrestricted 10.86 Metagenome 3300031820 *Microbiome Permanent Draft Hardwood forest soil microbial communities from various locations in the United States Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515 DOE Joint Genome Institute (JGI) 3300031820 Metagenome Analysis spades v. 3.12.0 Yes Yes jdraff@indiana.edu Jonathan Raff No Environmental Terrestrial Temperate forest Soil Bulk soil hardwood forest soil 39.0844 -86.4705 3097655670 8017961 1530 29 2869 48 SRX6409951 Unrestricted 7.09 Metagenome 3300021842 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t8i015 Shell Corporation 3300021842 Metagenome Analysis idba_ud released by JGI data releasing policy Yes Yes nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis No Environmental Terrestrial Ranch Soil Agricultural land soil 52.172047 -113.738964 3519370576 14914487 1564 46 2830 108 0.0 Metagenome 3300005705 *Microbiome Permanent Draft Freshwater microbial communities from Lake Kinneret, Israel Aquatic microbial communities from Lake Kinneret, Israel - sample 3 Macrogen 3300005705 Metagenome Analysis Unkonwn No Yes beja@tx.technion.ac.il Beja O No Environmental Aquatic Lentic Freshwater Unclassified Freshwater 32.7872 35.6176 42973 42 1 0 1 0 0.0 Metagenome 3300026685 *Microbiome Permanent Draft Soil microbial communities from 10 grassland sites in CA, CO, KS, KY, MN, MO, NM, SC, TX, that have been nitrogen fertilized Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN349 (SPAdes) DOE Joint Genome Institute (JGI) 3300026685 Metagenome Analysis spades v. 3.11.1 Yes Yes noah.fierer@colorado.edu Noah Fierer No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 35.913 -79.056 10441038 32596 62 7 122 11 SRX3311795 Unrestricted 0.0 Metagenome 3300049294 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MB30 DOE Joint Genome Institute (JGI) 3300049294 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 74221713 197220 264 11 578 14 Unrestricted 21.99 Metagenome 3300003276 *Microbiome Permanent Draft Whitefly associated endosymbiont microbial communities from Neve Yaar, Israel Whitefly Bemisia tabaci associated secondary symbiont microbial communities from Neve Yaar, Israel - sample Cardinium_whitefly 3300003276 Metagenome Analysis released by JGI data releasing policy No Yes itaiopa6@gmail.com Itai Opatovsky No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Whitefly Bemisia tabaci associated 32.708101 35.179264 1574974 2046 1 0 2 0 0.0 Metagenome 3300050350 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 AvC-P1(3) 30-34 DOE Joint Genome Institute (JGI) 3300050350 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.355 19.0437 769757378 1192439 208 0 312 0 Restricted 13.98 Metagenome 3300028477 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_05JUN2017_LD1 DOE Joint Genome Institute (JGI) 3300028477 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 57061376 104888 4 14 6 16 SRX5345791 Unrestricted 23.68 Metagenome 3300017476 *Microbiome Permanent Draft Bras del Port Julio 2014 Non-marine hypersaline water microbial communities from Bras del Port saltern pond, Alicante, Spain - CCAB Febrary 2014 University of Valencia 3300017476 Metagenome Analysis idba.1.1.1 released by JGI data releasing policy No Yes ramosloles@gmail.com Maria Dolores Ramos Barbero No Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Unclassified Non marine hypersaline water 38.1922 -0.5918 30057221 95672 0 0 0 0 0.0 Metagenome 3300004256 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 124_LOW14 DOE Joint Genome Institute (JGI) 3300004256 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 64927868 139673 41 0 66 0 SRX2721723 Unrestricted 0.0 Metagenome 3300000719 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 44 DOE Joint Genome Institute (JGI) 3300000719 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 14139040 43648 38 0 67 0 SRX4340893 Unrestricted 0.0 Metagenome 3300027180 *Microbiome Permanent Draft Rhizosphere and bulk soil microbial communities from Harvard Forest, USA Bulk soil microbial communities from Harvard Forest, USA - 4Bulk_unsorted metaG (SPAdes) DOE Joint Genome Institute (JGI) 3300027180 Metagenome Analysis spades v. 3.11.1 Yes Yes deangelis@microbio.umass.edu Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Bulk soil bulk soil 42.3912 -72.1737 8411783 27098 17 3 30 1 SRX2718036 Unrestricted 0.0 Metagenome 3300059723 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1557A-02 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059723 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2763 -124.0055 126165233 279978 149 6 244 12 SRX2753742 Unrestricted 0.0 Metagenome 7000000189 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 158337416 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000189 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 9726638 17822 0 0 0 0 0.0 Metagenome 3300022835 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 717 E2 10-14 DOE Joint Genome Institute (JGI) 3300022835 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0468 66122830 181363 137 8 267 6 SRX4415322, SRX8127944 Unrestricted 0.0 Metagenome 3300031539 *Microbiome Permanent Draft Soil microbial communities from Risofladan, Vaasa, Finland Soil microbial communities from Risofladan, Vaasa, Finland - UN-3 DOE Joint Genome Institute (JGI) 3300031539 Metagenome Analysis spades v. 3.12.0 Yes Yes eva.hogfors-ronnholm@novia.fi Eva Hogfors-Ronnholm Yes Environmental Terrestrial Coastal area Soil Acid sulfate soil soil 63.0472 21.7116 2879994593 5971231 932 19 1425 27 SRX5356420 Unrestricted 20.01 Metagenome 3300013988 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01008 Weill Cornell Medical College 3300013988 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.58 -73.83 10126213 19513 17 0 21 1 SRX822970 0.0 Metagenome 3300039604 *Microbiome Permanent Draft Agricultural soil microbial communities from Boone County, Iowa, USA Corn field soil microbial communities from Boone County, Iowa, USA - CC35-Micro-July2012 Iowa State University 3300039604 Metagenome Analysis JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Agricultural land Corn field soil 42.01375 -93.783837 83782875 253922 126 4 289 5 0.0 Metagenome 3300009716 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC111_MetaG DOE Joint Genome Institute (JGI) 3300009716 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 22.28 114.17 748531001 1411375 875 13 1422 23 SRX2339079 Unrestricted 0.0 Metagenome 3300013491 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01105 Weill Cornell Medical College 3300013491 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.66 -73.93 20138462 33502 11 0 24 0 SRX823060 0.0 Metagenome 3300034520 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Fracking water microbial communities from deep shales in Oklahoma, United States - M2-7-1 DOE Joint Genome Institute (JGI) 3300034520 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back fracking water 35.784 -98.26 170447213 260013 246 3 328 18 SRX8135501 Unrestricted 323.66 Metagenome 3300005939 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKX DOE Joint Genome Institute (JGI) 3300005939 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes r.cavicchioli@unsw.edu.au, r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli, Rick Cavicchioli; TBK Reddy Yes 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.4725 78.188 835219590 2229194 808 5 1324 10 SRX2747203 Unrestricted 0.0 Metagenome 3300007627 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1546A-02 DOE Joint Genome Institute (JGI) 3300007627 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2311 -123.8825 303631356 590657 300 8 470 11 SRX2753621 Unrestricted 0.0 Metagenome 3300027462 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027462 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 208186630 569557 436 24 738 42 SRX2574383 Unrestricted 0.0 Metagenome 3300001612 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF017 DOE Joint Genome Institute (JGI) 3300001612 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 662918 1791 9 2 7 4 SRX2014336 Unrestricted 0.0 Metagenome 7000000167 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763820215 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000167 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 55961263 107331 0 0 0 0 0.0 Metagenome 3300069482 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_043-M-20160720-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069482 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 63108232 194568 138 4 280 6 0.0 Metagenome 3300046819 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Black Earth Creek, Cross Plains, Wisconsin, USA - blackearthcreek_2019_sw_WHONDRS-S19S_0061 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300046819 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 43.1091 -89.6403 180036167 318591 195 55 323 98 Unrestricted 0.0 Metagenome 3300070400 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_037-O-20180710-COMP-DNA1 3300070400 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 82433 291 0 0 0 0 0.0 Metagenome 3300043010 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - Beaver3Rectum1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043010 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Rectum rectum 49.18 -122.54 94228273 170633 254 5 351 5 SRX8345900 Unrestricted 50.78 Metagenome 3300038512 *Microbiome Permanent Draft Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China - SA2 v2 Sun Yat-Sen University 3300038512 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy No Yes yuxiaoli92@163.com Xiaoli Yu No Environmental Aquatic Intertidal zone Marine Mangrove sediment mangrove sediment 23.45 116.43 86093864 111020 44 14 93 10 0.0 Metagenome 3300070295 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_001-M-20160928-COMP-DNA1 3300070295 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 24254294 66984 40 2 107 3 0.0 Metagenome 3300036800 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Pine forests in California, United States - CAM_2 DOE Joint Genome Institute (JGI) 3300036800 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil 36.5 -121.8 3236032698 4777719 717 151 1055 185 SRX8393027 Unrestricted 16.87 Metagenome 3300007291 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_AAIW_ad_750m_LV_A DOE Joint Genome Institute (JGI) 3300007291 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -0.015038 -22.962334 637544064 1349135 582 26 991 49 SRX2719456 Unrestricted 0.0 Metagenome 3300027004 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G07K2-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300027004 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 42.4 -85.37 13984047 48322 68 3 112 6 SRX1991311 Unrestricted 0.0 Metagenome 3300008639 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764083206 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008639 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 191296021 270910 140 0 173 0 0.0 Metagenome 3300026959 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 3 (SPAdes) DOE Joint Genome Institute (JGI) 3300026959 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 78845700 191366 90 0 176 1 SRX4338204 Unrestricted 0.0 Metagenome 3300037095 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 714 S2 40-44 DOE Joint Genome Institute (JGI) 3300037095 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3532 19.0471 473660845 751798 146 4 205 10 SRX8138221 Unrestricted 25.44 Metagenome 3300039900 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, Pacific Southwest, CA, USA - SJER_005-M-20170315-COMP-DNA1 Battelle Memorial Institute 3300039900 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.10878 -119.73228 22479571 67274 163 13 283 16 0.0 Metagenome 3300029424 *Microbiome Permanent Draft Human feces microbial communities from cholera patients in hospital, Baltimore, Maryland, USA Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 043_10_27_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029424 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 188527198 265900 214 0 288 0 0.0 Metagenome 3300034175 *Microbiome Permanent Draft Soil and biocrust microbial communities from Mojave Desert, California, United States Biocrust microbial communities from Mojave Desert, California, United States - 35SMC DOE Joint Genome Institute (JGI) 3300034175 Metagenome Analysis metaspades v. 3.13.0 Yes Yes kfisher2@calstatela.edu Kirsten Fisher No Environmental Terrestrial Soil crust Soil Biological biocrust 34.3778 -117.6098 750501172 1719742 879 36 1532 76 SRX7620449 Unrestricted 9.32 Metagenome 3300029859 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37336 Beijing Genomics Institute (BGI) 3300029859 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 207038282 253047 149 0 227 0 0.0 Metagenome 3300000318 *Microbiome Draft Wetland microbial communities from Twitchell Island in the Sacramento Delta Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site L1 Cattail v1 DOE Joint Genome Institute (JGI) 3300000318 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes stringe@lbl.gov Susannah Tringe Yes 25991679 Environmental Aquatic Wetlands Marine Sediment Wetland 38.106796 -121.646457 296519018 679305 515 23 945 41 Unrestricted 0.0 Metagenome 3300070642 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_003-M-20200603-COMP-DNA1 3300070642 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 3224207 10609 23 4 43 7 0.0 Metagenome 3300048671 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Freshwater microbial communities from Marshall Gulch, Summerhaven, Arizona, USA - marshallgulch_2019_sw_WHONDRS-S19S_0035 (Nextera) (version 2) DOE Joint Genome Institute (JGI) 3300048671 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 32.3273 -110.7595 46363827 80752 144 75 253 105 Unrestricted 0.0 Metagenome 3300019892 *Microbiome Permanent Draft Microbial community shotgun study from Ayvalik Saltern, Turkey Non-marine hypersaline microbial communities of Ayvalik Saltern, Turkey - 1k Argonne National Laboratory 3300019892 Metagenome Analysis IDBA_UD released by JGI data releasing policy No Yes albayrakece@gmail.com ece albayrak No Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Unclassified Non-marine hypersaline water 39.3192 26.6924 68566447 108281 40 0 65 0 0.0 Metagenome 3300000365 *Microbiome Draft Alkaline sediment microbial communities from Soda lakes and Soda Solonchak soils Alkaline sediment microbial communities from Lake Tanatar, Kulunda Steppe, Russia - 9KL_010_SED DOE Joint Genome Institute (JGI) 3300000365 Metagenome Analysis released based on JGI ITS Yes Yes g.muijzer@uva.nl Gerard Muyzer No Environmental Aquatic Alkaline Non-marine Saline and Alkaline Sediment Alkaline sediment 51.39 79.48 642499223 1446424 721 11 1319 23 Unrestricted 0.0 Metagenome 3300042391 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME25May2005-rr0861 DOE Joint Genome Institute (JGI) 3300042391 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 645097257 1027507 211 34 273 42 Unrestricted 21.59 Metagenome 3300009088 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG DOE Joint Genome Institute (JGI) 3300009088 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 2387382994 4715001 1127 25 1938 61 SRX2933635 Unrestricted 0.0 Metagenome 3300039220 *Microbiome Finished Crude oil contaminated agricultural soil mecrobial communities from various regions in India Soil microbial community of crude oil contaminated soil of Amguri region, Assam, India - A1 Eurofins Genomics India Pvt Ltd. 3300039220 Metagenome Analysis CLC Genomic workbench v. 9.5.2 released by JGI data releasing policy No Yes nanditadas753@gmail.com nandita das No Environmental Terrestrial Unclassified Soil Oil-contaminated Soil 26.8102 94.5238 194259596 327623 75 5 127 5 0.0 Metagenome 3300029242 *Microbiome Permanent Draft Sewage microbial communities from wastewater treatment plant in Sweden Sewage sludge microbial communities from sewage treatment plant in Sweden - SWESTP1 - Uppsala-primary/surplus 102 University of Gothenburg 3300029242 Metagenome Analysis released Yes Yes No Engineered Wastewater Unclassified Industrial wastewater Unclassified sludge 59.844519 17.659844 131296493 252784 216 5 398 5 0.0 Metagenome 3300049919 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world River sediment microbial communities from Colorado, USA - eastriver_2019_sed_WHONDRS-S19S_0100 DOE Joint Genome Institute (JGI) 3300049919 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Sediment River sediment 38.92352 -106.950961 469528442 1024132 898 38 1675 51 Restricted 11.15 Metagenome 3300031485 *Microbiome Finished Hydraulic fracturing wastewater bacterial and archaeal communities from a shale gas play in Sichuan Basin, China Hydraulic fracturing wastewater microbial communities from a shale gas play in Sichuan Basin, China - A2 Beijing Novogene Bioinformatics Technology Co., Ltd 3300031485 Metagenome Analysis megahit v. 1.1.3 released by JGI data releasing policy Yes Yes czhong@ualberta.ca Cheng Zhong No Engineered Wastewater Unclassified Industrial wastewater Unclassified Industrial wastewater 29.22 104.16 200399001 307564 233 2 365 2 0.0 Metagenome 3300012632 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100305 University of Pennsylvania 3300012632 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 24631550 54507 18 0 27 0 SRX756596 0.0 Metagenome 3300041894 *Microbiome Finished Marine bacterial communities from Black Sea, Georgia Marine viral communities from Black Sea, Gonio, Georgia ? BS34 NCDC Lugar Center, Georgia 3300041894 Metagenome Analysis Denovo v. 3.2 released by JGI data releasing policy No Yes iakusradze@pha.ge Ia Kusradze No Environmental Aquatic Unclassified Marine Unclassified Marine 41.5605 41.5711 5822530 6687 5 5 9 6 0.0 Metagenome 3300050132 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim2 70-74 DOE Joint Genome Institute (JGI) 3300050132 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.353634 19.04734 466357179 641165 167 9 225 13 Restricted 24.09 Metagenome 3300042509 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Jul2017-rr0567 DOE Joint Genome Institute (JGI) 3300042509 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 1183160176 1845231 425 99 600 149 Unrestricted 16.0 Metagenome 3300045736 *Microbiome Permanent Draft Sediment microbial communities from various rivers and their estuaries in the United States Sediment microbial communities from San Francisco Bay, Delta Estuary, California, United States - BTRS19_Sengupta_9S DOE Joint Genome Institute (JGI) 3300045736 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sg.aditi@gmail.com Aditi Sengupta No Environmental Aquatic Intertidal zone Marine Estuary sediment 38.0067 -122.3507 895522684 1589309 568 49 999 70 Unrestricted 20.05 Metagenome 3300045971 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Microbial mat bacterial communities from freshwater pond, North Slope, Alaska, United States - OKS_Pond6_8July2019 DOE Joint Genome Institute (JGI) 3300045971 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes demerson@bigelow.org David Emerson No Environmental Aquatic Pond Freshwater Unclassified freshwater ferric oxide microbial mat 68.6722 -149.1363 2025664425 3134099 898 355 1318 477 Unrestricted 19.42 Metagenome 3300000559 *Microbiome Permanent Draft Soil microbial communities from Kansas Great Prairie, USA, amended with BrdU Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly DOE Joint Genome Institute (JGI) 3300000559 Metagenome Analysis Clc-workbench Released on PI's approval No Yes maude.david@yahoo.fr Maude David No Environmental Terrestrial Loam Soil Grasslands Soil 39.100992 -96.608258 4215398323 18017326 1127 123 2408 229 0.0 Metagenome 3300009556 *Microbiome Permanent Draft Enriched permafrost microbial communities from McMurdo Dry Valleys, Western edge of Lake Miers, Antarctica Enriched permafrost microbial communities from McMurdo Dry Valleys, Western edge of Lake Miers, Antarctica - Ant1 Laboratory of Evolutionary Genomics 3300009556 Metagenome Analysis SPAdes 3.7 released by Joy Buongiorno Yes Yes JBuongio@vols.utk.edu Joy Buongiorno No Environmental Terrestrial Unclassified Geologic Unclassified Permafrost -78.083333 163.8 7.8-8.05 36551631 39190 21 0 14 0 0.0 Metagenome 3300041680 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_283 MetaG AgResearch, New Zealand, Mosgeil 3300041680 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 1171450631 2598542 320 41 1115 46 0.0 Metagenome 3300022179 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N DOE Joint Genome Institute (JGI) 3300022179 Metagenome Analysis spades v. 3.11.1-check Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.2382 -86.2805 277947554 703356 0 0 0 0 Unrestricted 0.0 Metagenome 3300040347 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - NIWO_040-O-20160828-COMP-DNA1 Battelle Memorial Institute 3300040347 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.05425 -105.58237 4373274 13439 37 7 87 9 0.0 Metagenome 3300002486 *Microbiome Permanent Draft Hot spring microbial communities from Mammoth Springs in Yellowstone National Park, Montana, USA Hot spring microbial communities from Mammoth Springs in Yellowstone National Park, Montana, USA - YNG_F_2009 3300002486 Metagenome Analysis released by JGI data releasing policy No Yes Dr. Bruce W. Fouke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 2134762 3336 1 0 1 0 0.0 Metagenome 3300038752 *Microbiome Permanent Draft Marine microbial communities from different locations and depths of Red Sea, Saudi Arabia Marine microbial communities from Red Sea, Saudi Arabia - sample34 King Abdulaziz City for Science and Technology (KACST) 3300038752 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 27377622 Environmental Aquatic Unclassified Marine Unclassified Marine 25.46 36.6 74235363 158292 65 0 113 0 SRX1097602 0.0 Metagenome 3300003082 *Microbiome Permanent Draft Acid mine drainage microbial communities from Carnoules, Gard, France Acid Mine Drainage microbial communities from Carnoules, Gard, France - bin 7 CEA Genoscope 3300003082 Metagenome Analysis Made public because these are downloaded from Genbank No Yes ipagani@lbl.gov Pelletier,E., Ionna Pagani No Environmental Aquatic Groundwater Freshwater Contaminated Acid mine drainage 43.303 6.188 2530310 2755 1 0 1 0 0.0 Metagenome 3300023248 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T100 DOE Joint Genome Institute (JGI) 3300023248 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0466 203589358 386995 232 2 424 0 SRX4415310, SRX7705522 Unrestricted 0.0 Metagenome 3300011645 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00480 Weill Cornell Medical College 3300011645 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.81 -73.9 31270913 44758 16 0 22 1 SRX822449 0.0 Metagenome 3300013898 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100117 University of Pennsylvania 3300013898 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 3303964 9478 12 0 13 0 SRX756713 0.0 Metagenome 3300006098 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t1_683M_control - microbial_metagenome University of Texas Southwestern Medical Center 3300006098 Metagenome Analysis SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 32.815891 -96.846336 193551110 345577 175 3 213 3 0.0 Metagenome 3300057200 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2020-0093 DOE Joint Genome Institute (JGI) 3300057200 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.7269 -83.42329 563128893 1215407 320 101 571 143 Unrestricted 19.07 Metagenome 7000000448 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 765094712 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000448 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 5554723 13982 0 0 0 0 0.0 Metagenome 3300034083 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B1A0.2 DOE Joint Genome Institute (JGI) 3300034083 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 36.0103 -84.2696 348085051 920617 527 4 984 5 SRX7658932 Unrestricted 7.05 Metagenome 3300045484 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime ecozone, Canada - Lake 12-676 Genome Quebec 3300045484 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.695238 -124.507497 1194241430 2625621 571 158 992 377 0.0 Metagenome 3300022802 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R10 Version 2 University of New South Wales 3300022802 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 94705215 153563 67 2 93 3 0.0 Metagenome 3300042482 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME03Dec2010-rr0033 DOE Joint Genome Institute (JGI) 3300042482 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 718432355 1125286 273 48 349 57 Unrestricted 26.7 Metagenome 3300070956 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The Jones Center At Ichauway, Georgia, USA - JERC_050-M-20190730-COMP-DNA1 3300070956 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 3406970 11582 31 8 72 13 0.0 Metagenome 3300043086 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - Beaver3Rectum1 (coverage test 4Gb) (version 3) DOE Joint Genome Institute (JGI) 3300043086 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Rectum rectum 49.18 -122.54 216403742 391128 365 11 546 12 SRX8345900 Unrestricted 26.51 Metagenome 3300019789 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction) DOE Joint Genome Institute (JGI) 3300019789 Metagenome Analysis metalrec/blasr v. metalrec version 1.0.2/blasr 1.3.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 829601009 1324835 403 72 626 98 SRX5781656, SRX5781655, SRX5781659, SRX5781658, SRX5781657, SRX5781663, SRX5781662, SRX5781661, SRX5781660 Unrestricted 0.0 Metagenome 3300012973 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E36 Day 36 Metagenome DOE Joint Genome Institute (JGI) 3300012973 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Fecal 38.04 -122.5 715029913 1304749 896 119 1346 192 SRX3205709 Unrestricted 0.0 Metagenome 3300011554 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00221 Weill Cornell Medical College 3300011554 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.88 -73.89 24192248 34834 20 0 19 0 SRX822200 0.0 Metagenome 3300064929 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 739 in Chauvin, Alberta, Canada - S00JY_0805 Microbiome Insights 3300064929 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 52.4340656 -110.170687 81964150 116820 44 8 89 6 0.0 Metagenome 3300000912 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 DOE Joint Genome Institute (JGI) 3300000912 Metagenome Analysis Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 45132697 138503 148 32 254 73 SRX1986308, SRX2021689, SRX1986307 Unrestricted 0.0 Metagenome 3300020285 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B000000460 (ERX555972-ERR599034) CEA Genoscope 3300020285 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -35.2792 26.382 134476821 324529 204 29 295 46 0.0 Metagenome 3300008121 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-100-LTR University of Michigan 3300008121 Metagenome Analysis IDBA_UD released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.8271 -83.1945 8.578 1164625934 1114130 125 81 124 112 0.0 Metagenome 3300009780 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC045_MetaG DOE Joint Genome Institute (JGI) 3300009780 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.12 -87.63 1133915978 2120542 872 4 1349 8 SRX2338867 Unrestricted 0.0 Metagenome 3300023443 *Microbiome Permanent Draft Microbial communities of deep seafloor calcareous sediment with volcaniclastic crumbs from southwestern Indian Ocean Marine sediment microbial communities from southwestern Indian Ocean - DY125-40IV-SWIR-S028-TVG17 Third Institute of Oceanography, State Oceanic Administration 3300023443 Metagenome Analysis idba v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Sediment Marine Unclassified sediment -38.75 47.41667 2186052575 3738583 350 106 735 110 0.0 Metagenome 7000000304 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159227541 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000304 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 126264691 258578 0 0 0 0 0.0 Metagenome 3300005732 *Microbiome Permanent Draft Microbial degradation of oil Seawater microbial communities from Vineyard Sound, MA, USA - Succinate ammended T7 University of Wisconsin, Madison 3300005732 Metagenome Analysis velvet released per JGI data release policy No Yes rsimiste@haverford.edu, rlsimister@gmail.com rachel simister, Rachel Simister No Environmental Aquatic Unclassified Marine Unclassified marine 41.4417 -70.7744 63105308 107568 200 0 255 0 0.0 Metagenome 3300001439 *Microbiome Permanent Draft Mangrove swamp biosurfactant microbial communities from Bertioga, Sao Paulo, Brazil Mangrove swamp biosurfactant microbial communities from Bertioga, Sao Paulo, Brazil - Fosmid_H5 3300001439 Metagenome Analysis released by JGI data releasing policy No Yes dfdomingos@uol.com.br Daniela Domingos, Daniela F. Domingos No Environmental Aquatic Oceanic Marine Oil-contaminated sediment Mangrove swamp biosurfactant -23.896944 -46.207778 31586 25 0 0 0 0 0.0 Metagenome 3300048825 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 719 S2 30-34 DOE Joint Genome Institute (JGI) 3300048825 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3532 19.0474 480555950 635415 131 4 163 5 Restricted 29.02 Metagenome 3300027116 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A4-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300027116 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 23624174 78960 90 2 178 4 SRX1990511 Unrestricted 0.0 Metagenome 3300006074 *Microbiome Permanent Draft Mining for adhesins from protozoa-associated epibionts Protozoa-associated epibionts from sheep rumen, Palmerston North, New Zealand - c-myc screened Leibniz Institute 3300006074 Metagenome Analysis Unknown released per JGI data release policy No Yes filomena.ng@agresearch.co.nz Filomena Ng No Host-associated Mammals Stomach Digestive system Rumen Rumen -40.355 175.6117 1233690 4258 3 1 1 2 0.0 Metagenome 3300013874 *Microbiome Permanent Draft Switchgrass metagenome 2014 Rhizosphere microbial communities from switchgrass harvested rhizosphere in Austin, TX, USA - RS_213 DOE Joint Genome Institute (JGI) 3300013874 Metagenome Analysis Velvet 1.2.07 released by JGI data releasing policy No Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 30.387044 -97.730126 15947384 41276 39 2 82 0 0.0 Metagenome 3300024436 *Microbiome Permanent Draft Vaginal microbial communities from lab mice Vaginal microbial communities from healthy lab mice, Madrid, Spain - G2-S16 treatment B2, day 20 Polytechnic University of Valencia 3300024436 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals Vagina Reproductive system Unclassified mice vagina 40.4191094 -3.6725753 705783 1081 0 0 0 0 0.0 Metagenome 3300002734 *Microbiome Permanent Draft Petrosia ficiformis microbial communities from Milos, Greece Microbial sample from Petrosia ficiformis 3300002734 Metagenome Analysis released by JGI data releasing policy No Yes oulas@hcmr.gr Anastasis Oulas No Host-associated Porifera Unclassified Unclassified Unclassified Petrosia ficiformis 36.76759 24.51422 522988050 939673 309 1 502 3 0.0 Metagenome 3300043319 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada - Lake 10-354 Genome Quebec 3300043319 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 50.110319 -108.496977 1316578663 2893165 456 70 743 205 0.0 Metagenome 7000000243 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 604812005 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000243 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 114788483 193562 0 0 0 0 0.0 Metagenome 3300044578 *Microbiome Permanent Draft Marine microbial communities from various hydrothermal vent chimneys in Pacific Ocean Marine hydrothermal vent microbial communities from Castle chimney, Axial Seamount, Pacific Ocean - R674 Western Washington University 3300044578 Metagenome Analysis MegaHIT v. 1.2.9 released by Laura A Murray No Yes lmurray0918@gmail.com Laura Murray No Environmental Aquatic Hydrothermal vents Marine Black smokers Marine hydrothermal vent chimney 46.06 -130.0 90505095 173475 65 6 114 15 0.0 Metagenome 3300015158 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G1A, Ice margin) University of Bristol 3300015158 Metagenome Analysis SPADES released per Natalia: IMGSUPP-1553 Yes Yes maisie.nash@bristol.ac.uk; ama@envs.au.dk Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 67.15650902 -50.06398397 6.6 181720264 334232 145 1 230 1 0.0 Metagenome 3300040684 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Niwot Ridge Mountain Research Station, Southern Rockies & Colorado Plateau, CO, USA - STER_006-M-20160815-COMP-DNA1 Battelle Memorial Institute 3300040684 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.4619 -103.0293 1072591 3372 8 0 23 0 0.0 Metagenome 3300008412 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 638754422 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008412 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 187536378 356452 132 1 198 1 0.0 Metagenome 3300006790 *Microbiome Permanent Draft Marine viral communities from the Subarctic Pacific Ocean and the Gulf of Mexico Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG DOE Joint Genome Institute (JGI) 3300006790 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Marine 28.867 -90.467 325514038 633133 224 0 391 6 SRX7698297 Unrestricted 0.0 Metagenome 3300011430 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT600_2 DOE Joint Genome Institute (JGI) 3300011430 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.8897 -106.9083 447015333 961070 334 20 686 36 SRX3527519 Unrestricted 0.0 Metagenome 3300026752 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4w-11 (SPAdes) DOE Joint Genome Institute (JGI) 3300026752 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 22181894 72148 107 2 172 3 SRX1991157 Unrestricted 0.0 Metagenome 3300007893 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human Vaginal introitus microbial communities from NIH, USA - visit 2, subject 763577454 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007893 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Introitus Human 39.0042816 -77.1012173 3009101 7331 6 0 15 0 0.0 Metagenome 3300014854 *Microbiome Permanent Draft Danish lakes Microbial communities Depth profiles Lake Almind and Hund Sediment microbial communities from Lake Hund, Silkeborg, Region Midtjylland, Denmark - HUS_14.08.12_sediment_5-10cm re-submission with coverage Odense University Hospital 3300014854 Metagenome Analysis MEGAHIT v1.1.1 released by JGI data releasing policy Yes Yes atreusch@biology.sdu.dk Alexander Treusch No Environmental Aquatic Lake Freshwater Sediment Sediment 56.04 9.54 1148937 3112 7 0 9 0 0.0 Metagenome 3300019767 *Microbiome Permanent Draft Populus soil microbial communities from riparian zone of different river systems in the western United States Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T DOE Joint Genome Institute (JGI) 3300019767 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jen.schweitzer@utk.edu Jennifer Schweitzer No Environmental Terrestrial Riparian zone Soil Unclassified soil 35.0244 -111.7363 2823046742 7202101 2420 125 4133 219 SRX4808885 Unrestricted 9.33 Metagenome 3300042160 *Microbiome Permanent Draft Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA Soil aggregate microbial communities from Russell Ranch at UC Davis, California, USA - A5 University of California, Davis 3300042160 Metagenome Analysis SPAdes v. 3.12 released by JGI data releasing policy Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Ranch Soil Agricultural land Soil 38.54767454 -121.8677974 210341417 583364 270 5 532 12 0.0 Metagenome 3300043558 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield ecozone, Canada - Lake 06-274 Genome Quebec 3300043558 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.787686 -94.463764 1084831871 2530887 493 177 817 331 0.0 Metagenome 3300070877 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Chase Lake National Wildlife Refuge, North Dakota, USA - WOOD_024-M-20190715-COMP-DNA1 Battelle Memorial Institute 3300070877 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 47.151171 -99.262648 8.23-8.42 10566029 31748 59 1 97 5 0.0 Metagenome 3300032058 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS50 DOE Joint Genome Institute (JGI) 3300032058 Metagenome Analysis spades v. 3.12.0 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 459089898 857906 328 0 490 2 SRX6411887 Unrestricted 85.46 Metagenome 3300002410 *Microbiome Permanent Draft Phenol degrading bioreactor microbial communities from Hong Kong Phenol degrading bioreactor microbial communities from Hong Kong - T78, Anaerolinaceae, Chloroflexi Beijing Genomics Institute (BGI) 3300002410 Metagenome Analysis released per JGI data release policy No Yes richieju520@gmail.com Feng Ju No Engineered Bioreactor Unclassified Wastewater Unclassified Phenol degrading bioreactor 1860942 1725 2 0 3 0 0.0 Metagenome 3300010945 *Microbiome Permanent Draft Wastewater viral communities and vesicles from water purifying plant in Alicante,Spain Wastewater viral communities and vesicles from water purifying plant in Alicante,Spain - replicate C2 Autonomous University of Barcelona 3300010945 Metagenome Analysis SPAdes-3.8.1-Linux released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Engineered Wastewater Unclassified Industrial wastewater Unclassified wastewater 38.34 -0.48 61885252 138560 1 0 2 0 0.0 Metagenome 3300038685 *Microbiome Permanent Draft Marine salt marsh sediment microbial communities from south of England Realigned salt marsh sediment microbial communities from Fingringhoe Range, United Kingdom - W FRRM 1A University of York 3300038685 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh Realigned salt marsh sediment 51.83015 0.9503 81479716 192843 145 0 266 0 0.0 Metagenome 3300049278 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - CA33 DOE Joint Genome Institute (JGI) 3300049278 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.874444 378902163 992480 494 25 919 34 Unrestricted 6.92 Metagenome 3300065645 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 815 in Dunmore, Alberta, Canada - S00JY_0160 Microbiome Insights 3300065645 Metagenome Analysis megahit v. 1.2.9 Yes Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 49.5656823 -110.2741187 6543959 10223 14 0 33 0 0.0 Metagenome 3300001585 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP2913 DOE Joint Genome Institute (JGI) 3300001585 Metagenome Analysis Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 29.97 -23.69 43403400 108822 69 15 111 19 SRX1981965 Unrestricted 0.0 Metagenome 3300036477 *Microbiome Permanent Draft Uranium-contaminated sediments microbial communities after treatment in bioreactor, Oak Ridge, Tennessee, United States Uranium-contaminated sediment microbial communities from Steeds Pond, Savannah River Site, South Carolina, USA - C2-1B DOE Joint Genome Institute (JGI) 3300036477 Metagenome Analysis metaspades v. 3.13.0 Yes Yes mtaillef@eas.gatech.edu Martial Taillefert No Environmental Aquatic Lake Freshwater Sediment sediment slurry 33.1447 -81.4044 150464033 460441 308 12 572 15 SRX8816810 Unrestricted 4.87 Metagenome 3300040980 *Microbiome Permanent Draft Permafrost microbial communities from Nunavut, Canada to study carbon cycling Permafrost microbial communities from Nunavut, Canada - A3_65cm_18M University of Tennessee 3300040980 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes Yes 25414511 Environmental Terrestrial Unclassified Soil Permafrost Permafrost 250712912 512967 134 3 281 3 SRX710628 0.0 Metagenome 3300011714 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01076 Weill Cornell Medical College 3300011714 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.69 -73.98 34106547 50264 11 0 20 0 SRX823031 0.0 Metagenome 3300030459 *Microbiome Permanent Draft Human feces bacterial and viral communities from healthy and sick individuals from various locations in USA and Canada Human feces microbial communities from adenoma patient in Toronto, Canada - MG100208 University of Michigan 3300030459 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 43.65 -79.38 21472985 32275 36 0 49 0 0.0 Metagenome 3300049712 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - C20_B_BS (version 2) DOE Joint Genome Institute (JGI) 3300049712 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 492269493 1126419 967 37 1892 54 Unrestricted 0.0 Metagenome 3300003747 *Microbiome Permanent Draft Cyanobacterial communities from the Joint Genome Institute, California, USA Cyanobacterial communities from the Joint Genome Institute, California, USA from Joint Genome Institute, California, USA - FECB-24 metaG DOE Joint Genome Institute (JGI) 3300003747 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes mhess@lbl.gov, mhess@ucdavis.edu Matthias Hess No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Cyanobacterial 37.9313884 -122.0239394 63337982 105402 46 1 42 1 SRX7697928 Unrestricted 0.0 Metagenome 3300060445 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Seawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210610_14_01 DOE Joint Genome Institute (JGI) 3300060445 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 494783219 691850 243 186 292 240 Unrestricted 39.45 Metagenome 3300071062 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Rocky Mountains, Colorado, USA - RMNP_004-M-20200629-COMP-DNA2 3300071062 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 15318121 48946 39 13 69 21 0.0 Metagenome 3300043765 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Para, Brazil - FS42 DOE Joint Genome Institute (JGI) 3300043765 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -3.2628 -54.8932 824426220 1910346 319 5 536 14 Unrestricted 8.54 Metagenome 3300044252 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 184-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044252 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.8571 -107.0911 413617337 1133303 404 29 737 42 Unrestricted 7.66 Metagenome 3300039456 *Microbiome Permanent Draft Seawater microbial communities from the Faroe-Shetland Channel, North-East Atlantic Ocean Seawater microbial communities from the Faroe-Shetland Channel, North-East Atlantic Ocean - 5mSIP-HEX-2 DOE Joint Genome Institute (JGI) 3300039456 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tony.gutierrez@hw.ac.uk Tony Gutierrez No Environmental Aquatic Oceanic Marine Unclassified seawater 60.38 -4.54 92114595 119184 48 0 55 0 SRX9536175 Unrestricted 617.76 Metagenome 3300007983 *Microbiome Permanent Draft Salt pond water, soil and salt crust microbial communities from South San Francisco under conditions of wetland restoration. Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_D2_MG DOE Joint Genome Institute (JGI) 3300007983 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes stheroux@lbl.gov, stheroux@lbl.gov; sgtringe@lbl.gov Susanna Theroux, Susanna Theroux; Susannah Tringe Yes 34321618 Environmental Aquatic Intertidal zone Marine Salt pond sediment Pond soil 37.4965 -122.133 504332060 940690 518 5 896 10 SRX7077240 Unrestricted 0.0 Metagenome 3300035659 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL18G_13-A DOE Joint Genome Institute (JGI) 3300035659 Metagenome Analysis metaspades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5106 -110.3566 2974389903 5773615 1686 14 2706 16 SRX8280924 Unrestricted 13.16 Metagenome 3300056701 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 18O.5W.12 SIP fraction DOE Joint Genome Institute (JGI) 3300056701 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 123977676 232205 130 14 200 19 Unrestricted 12.27 Metagenome 3300012605 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100510 University of Pennsylvania 3300012605 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 23999217 42237 47 4 65 11 SRX756244 0.0 Metagenome 3300026512 *Microbiome Permanent Draft Marine microbial communities from hydrothermal vents in the Atlantic and Pacific Ocean Hydrothermal vent microbial communities from Guaymas Basin, Mexico - 4559-240 DOE Joint Genome Institute (JGI) 3300026512 Metagenome Analysis spades v. 3.11.1 Yes Yes pgirguis@oeb.harvard.edu Peter Girguis No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent 27.0067 -111.4094 417525177 737412 377 3 561 2 SRX4801621 Unrestricted 32.44 Metagenome 3300069391 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Moab, Southern Rockies & Colorado Plateau, UT, USA - MOAB_044-M-20170523-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069391 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 38.24833 -109.38827 9789054 31097 70 4 135 5 0.0 Metagenome 3300044849 *Microbiome Permanent Draft Sediment microbial communities from irrigation canal system in Merced County, California, USA Sediment microbial communities from irrigation canal in Merced County, California, USA - DOSP11-9-18-19 DOE Joint Genome Institute (JGI) 3300044849 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Built environment Irrigation canal Canal Sediment sediment 37.0205 -120.6891 468981106 1368819 907 62 1558 98 Restricted 6.36 Metagenome 3300043718 *Microbiome Permanent Draft Amazon rainforest soil and phyllosphere microbial communities from various locations in Brazil Soil microbial communities from forest in State of Rondonia, Brazil - Rondonia_Forest_1_A1m DOE Joint Genome Institute (JGI) 3300043718 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Tropical forest Soil Bulk soil Soil -10.169 -62.782 477486682 1316066 403 6 788 7 Unrestricted 8.11 Metagenome 3300038959 *Microbiome Permanent Draft Activated sludge microbial communities from various WWTPs in Denmark Activated sludge microbial communities from WWTP in Egaa, Denmark - EGA-2-2012 Aalborg University 3300038959 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified Activated sludge 56.21314 10.24247 40674423 95636 25 3 55 0 0.0 Metagenome 3300004885 *Microbiome Permanent Draft Ecklonia radiata associated microbial communities from Long Bay, Malabar Australia Ecklonia radiata associated microbial communities from Long Bay, Malabar Australia -Y4 University of New South Wales 3300004885 Metagenome Analysis idba-ud released per JGI data release policy Yes Yes z.qiu@student.unsw.edu.au Zhiguang Qiu No Host-associated Algae Unclassified Red algae Unclassified Ecklonia radiata associated 66888556 110621 27 8 45 15 0.0 Metagenome 3300069509 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Delta Junction, Taiga, AK, USA - DEJU_014-O-20170620-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069509 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 63.88112 -145.75136 43861197 121198 112 4 202 11 0.0 Metagenome 3300047177 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Peat moss microbial communities from bog in Frasne, France - Sphagnum fallax 10OTC_SF_FR DOE Joint Genome Institute (JGI) 3300047177 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston Yes 36069554 Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 1041723067 1909398 448 92 715 165 SRX14787458 Unrestricted 7.64 Metagenome 3300013382 *Microbiome Permanent Draft Baboon gut microbial communities from fecal samples in Kenya Baboon gut microbial communities from fecal samples in Kenya - F09 Duke University 3300013382 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Baboon gut 2.717 37.1 84509753 138217 79 3 138 1 SRX834636 0.0 Metagenome 3300053744 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHL_03 DOE Joint Genome Institute (JGI) 3300053744 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.40849 -82.168434 1128651762 1555168 42 64 74 57 Restricted 64.04 Metagenome 3300028800 *Microbiome Permanent Draft Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG DOE Joint Genome Institute (JGI) 3300028800 Metagenome Analysis spades v. 3.11.1 Yes Yes rbneum@uw.edu Rebecca Neumann No Host-associated Plants Rhizosphere Roots Soil rhizosphere 47.6516 -122.3045 2585637927 5519709 1276 47 2167 77 SRX5346292 Unrestricted 15.03 Metagenome 3300035058 *Microbiome Permanent Draft Fecal microbial communites from Wistar rat Fecal microbial communites from Wistar rat, Barcelona, Spain - C7-14 Autonomous University of Barcelona 3300035058 Metagenome Analysis velvet v. 3.3 released by JGI data releasing policy No Yes mberlanga@ub.edu Mercedes Berlanga No Host-associated Mammals Large intestine Digestive system Fecal feces 41.38 2.12 71906531 294203 618 0 1184 0 0.0 Metagenome 3300010405 *Microbiome Permanent Draft Microbial communities from soil contaminated with neutral mine drainage from mine area in Canaa dos Carajas, Brazil Microbial communities from soil contaminated with neutral mine drainage from mine area in Canaa dos Carajas, Brazil - End of the channel, sample P5_2014 Illumina 3300010405 Metagenome Analysis IDBA UD released per JGI data release policy No Yes leticiabp11@gmail.com Leticia Pereira No Environmental Terrestrial Unclassified Soil Contaminated soil -6.42916667 -50.06611111 121286 313 3 0 0 0 0.0 Metagenome 3300024967 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 21_HOW5 (SPAdes) DOE Joint Genome Institute (JGI) 3300024967 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 87707318 154936 41 2 63 2 SRX2720161 Unrestricted 0.0 Metagenome 3300000299 *Microbiome Permanent Draft Chicken Cecal microbial communities from Finale Emilia, Italy Chicken cecal microbial communities from Finale Emilia, Italy, sample from chicken A 454 Life Sciences 3300000299 Metagenome Analysis meta-velvet released per JGI data release policy No Yes simone.rampelli@unibo.it Simone Rampelli No Host-associated Birds Large intestine Digestive system Ceca Chicken Cecal 44.834935 11.295948 723527 4018 8 0 11 0 0.0 Metagenome 3300009540 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB5-Ph DOE Joint Genome Institute (JGI) 3300009540 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 1939424867 3546732 1275 25 2043 42 SRX2838873, SRX2838872 Unrestricted 0.0 Metagenome 3300059748 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1552A-02 (v5.1 annotation) (version 3) DOE Joint Genome Institute (JGI) 3300059748 Metagenome Analysis spades v. 3.11.1 released based on JGI ITS Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.1869 -123.8842 158947415 324530 153 10 233 15 SRX2753728 Unrestricted 0.0 Metagenome 3300006286 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765135172 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300006286 Metagenome Analysis SPADES v3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov; nckyrpides@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 23761932 42576 19 0 31 0 0.0 Metagenome 3300010290 *Microbiome Permanent Draft Marine gutless worms symbiont microbial communities from various locations Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 2 OAHU.JWI-54 metaG DOE Joint Genome Institute (JGI) 3300010290 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes ndubilie@mpi-bremen.de Nicole Dubilier No Host-associated Annelida Unclassified Digestive system Unclassified Marine gutless worms 21.4686 -157.8184 619394788 838653 8 13 11 26 Unrestricted 0.0 Metagenome 3300049714 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 055-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300049714 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.923 -106.9499 57912121 177694 163 2 296 10 Unrestricted 0.0 Metagenome 3300019471 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 4 Autonomous University of Barcelona 3300019471 Metagenome Analysis SPAdes 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 3891422 7020 1 0 2 2 0.0 Metagenome 3300024047 *Microbiome Permanent Draft Soil and plant litter microbial communities from temperate forests in California, United States Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-309 DOE Joint Genome Institute (JGI) 3300024047 Metagenome Analysis spades v. 3.11.1 Yes Yes kadynarski@ucdavis.edu Katherine Dynarski No Environmental Terrestrial Unclassified Plant litter Unclassified leaf litter 40.2526 -123.026 108747027 193857 31 19 45 23 SRX4392939 Unrestricted 41.78 Metagenome 3300008730 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765560005 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008730 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 145327644 244849 106 0 169 0 0.0 Metagenome 3300017727 *Microbiome Permanent Draft Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA - 24 SPOT_SRF_2011-07-20 DOE Joint Genome Institute (JGI) 3300017727 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes nahlgren@clarku.edu Nathan Ahlgren No Environmental Aquatic Strait Marine Unclassified seawater 33.55 -118.4 314751416 722930 18 18 39 31 SRX7207152, SRX7207151 Unrestricted 0.0 Metagenome 3300038366 *Microbiome Permanent Draft Hypersaline water viral communities from Lake Tyrrell, Australia Hypersaline water viral communities from Lake Tyrrell, Australia - 2009B University of California, Berkeley 3300038366 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline water -35.309 142.795 24548301 62139 1 3 5 1 0.0 Metagenome 3300011712 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00629 Weill Cornell Medical College 3300011712 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.83 -73.93 35372693 49887 21 0 28 0 SRX822596 0.0 Metagenome 3300070715 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Lajas Experimental Station, Puerto Rico, USA - LAJA_042-M-20160914-COMP-DNA2 3300070715 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Grasslands Soil Pasture 106251 371 1 0 2 0 0.0 Metagenome 3300007711 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160502038 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300007711 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Tongue dorsum, tongue dorsum Human 39.0042816 -77.1012173 124297344 223540 99 0 160 0 0.0 Metagenome 3300071064 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_010-M-20190729-COMP-DNA1 3300071064 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 9250866 29673 48 4 101 9 0.0 Metagenome 3300044254 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 387-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300044254 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9922 -107.0635 362382193 1040164 401 23 686 24 Unrestricted 6.9 Metagenome 3300015605 *Microbiome Permanent Draft Wastewater microbial communities from the domestic sewers Wastewater microbial communities from domestic sewers in Singapore- Site F Oct Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300015605 Metagenome Analysis CLC workbench released by JGI data releasing policy No Yes erinscm@nus.edu.sg Charmaine Ng No Engineered Wastewater Unclassified Sewage Unclassified Wastewater 1.28362 103.859825 164589622 212745 39 2 37 2 0.0 Metagenome 3300024989 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_750_biof (SPAdes) DOE Joint Genome Institute (JGI) 3300024989 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 330195624 400949 91 14 106 13 SRX2867324, SRX2867325 Unrestricted 0.0 Metagenome 3300043493 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 311-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043493 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified soil 38.9094 -107.0283 596126138 1535504 411 13 772 21 Unrestricted 7.21 Metagenome 3300013384 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100290 University of Pennsylvania 3300013384 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 14785446 22147 6 0 7 0 SRX756611 0.0 Metagenome 3300053742 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Sugarcane leaf microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHL_03 DOE Joint Genome Institute (JGI) 3300053742 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Phylloplane/Leaf Phyllosphere Endosphere Leaf 29.40849 -82.168434 324921612 467003 7 18 16 19 Restricted 43.68 Metagenome 3300000610 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 07JUN2007 hypolimnion DOE Joint Genome Institute (JGI) 3300000610 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300026514 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B DOE Joint Genome Institute (JGI) 3300026514 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 284018235 684981 224 9 397 22 SRX4802723 Unrestricted 9.91 Metagenome 3300070768 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Oak Ridge, Tennessee, USA - ORNL_006-M-20200603-COMP-DNA1 3300070768 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 13070174 42928 71 8 118 14 0.0 Metagenome 3300001986 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - site 3 B9 DOE Joint Genome Institute (JGI) 3300001986 Metagenome Analysis Yes Yes rmkelly@ncsu.edu Robert Kelly No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 44.6102 -110.4387 8676194 11634 14 1 20 0 SRX2554339, SRX2554338, SRX2554346, SRX2554355, SRX2554344, SRX2554345, SRX2554342, SRX2554343, SRX2554340, SRX2554341 Unrestricted 0.0 Metagenome 3300001745 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4-12 DOE Joint Genome Institute (JGI) 3300001745 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.2958 -89.3799 195893 714 16 4 37 5 SRX1990534 Unrestricted 0.0 Metagenome 3300042484 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME25Jun2008-rd0189 DOE Joint Genome Institute (JGI) 3300042484 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 908382824 1444086 277 27 393 45 Unrestricted 21.41 Metagenome 3300021301 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen5, Rep 3, Penicillin and Streptomycin DOE Joint Genome Institute (JGI) 3300021301 Metagenome Analysis spades v. 3.11.1-check Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 34.4149 -119.841 140324133 153644 11 20 15 29 SRX4038249 Unrestricted 142.68 Metagenome 3300019878 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Soil microbial communities from a riparian zone of the East river system, Colorado, United States - U2m2 DOE Joint Genome Institute (JGI) 3300019878 Metagenome Analysis spades v. 3.10.1 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified soil 38.9355 -106.9424 226232203 500784 237 20 423 28 SRX3948140, SRX3948139 Unrestricted 0.0 Metagenome 3300025802 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWC_D2 (SPAdes) DOE Joint Genome Institute (JGI) 3300025802 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.015041 -122.501831 250613017 469438 189 0 313 3 SRX7142761 Unrestricted 0.0 Metagenome 3300045482 *Microbiome Permanent Draft Groundwater microbial communities from wells in Ash Sharqiyah North Governorate, Oman Groundwater microbial communities from well in Ash Sharqiyah North Governorate, Oman - OM20_NSHQ14_9-30 DOE Joint Genome Institute (JGI) 3300045482 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes rachel.spietz@montana.edu Rachel Spietz No Environmental Aquatic Groundwater Freshwater Unclassified groundwater 22.8661 58.7105 280793062 387635 157 2 217 3 Unrestricted 184.56 Metagenome 2166559003 *Microbiome Permanent Draft Marine sediment microbial communities from Little Sippewissett, Falmouth, MA, that are multicellular and magnetotactic MMB 454-1 Pennsylvania State University 2166559003 Metagenome Analysis Geneious released per JGI data release policy No Yes esthersi@usc.edu Esther Singer No Environmental Aquatic Intertidal zone Marine Sediment environment 41.57585 -70.63581 8 12769521 32031 7 0 6 0 0.0 Metagenome 3300003587 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI073_LV_135m_DNA DOE Joint Genome Institute (JGI) 3300003587 Metagenome Analysis Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 192377443 398777 206 7 367 12 Unrestricted 0.0 Metagenome 3300022804 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Rhopaloides odorabile from Great Barrier Reef, Australia - R4 Version 2 University of New South Wales 3300022804 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 8.1 87599133 153990 71 2 99 3 0.0 Metagenome 3300021599 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-C-NA Downsampled Assembly University of Michigan 3300021599 Metagenome Analysis IDBA-UD released by JGI data releasing policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater, plankton 41.7635 -83.3309 9.195 368358148 694966 307 78 456 102 0.0 Metagenome 3300041789 *Microbiome Permanent Draft Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States Soil microbial communities from subalpine grassland in Crested Butte, Colorado, United States - A_27_wk_3 DOE Joint Genome Institute (JGI) 3300041789 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes skivlin@utk.edu Stephanie Kivlin No Environmental Terrestrial Grasslands Soil Unclassified soil 38.8655 -106.912 172462644 550173 331 14 603 21 SRX14808262 Unrestricted 7.15 Metagenome 3300032895 *Microbiome Permanent Draft Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3 DOE Joint Genome Institute (JGI) 3300032895 Metagenome Analysis spades v. 3.13.0 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified soil 26.5059 -80.2517 3167289805 5573778 901 118 1385 164 SRX5666033 Unrestricted 14.58 Metagenome 3300027035 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 30 (SPAdes) DOE Joint Genome Institute (JGI) 3300027035 Metagenome Analysis spades v. 3.11.1 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 107112332 251076 111 3 225 2 SRX1984822 Unrestricted 0.0 Metagenome 3300060338 *Microbiome Permanent Draft Marine sediment microbial communities from Pacific Ocean, California, USA Marine sediment microbial communities from Pacific Ocean, California, USA - FI_003 DOE Joint Genome Institute (JGI) 3300060338 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes pjensen@ucsd.edu Paul r. Jensen No Environmental Aquatic Intertidal zone Marine Sediment Marine sediment 32.77 -117.22 461481889 713174 413 23 681 34 Unrestricted 12.19 Metagenome 3300055458 *Microbiome Permanent Draft Antarctic soils microbial communities from West Antarctic Peninsula, Antarctica Glacial till microbial communities from Anvers Island, Antarctica - 16O.4W.9 SIP fraction DOE Joint Genome Institute (JGI) 3300055458 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes Alicia.Purcell@ttu.edu Alicia Purcell No Environmental Terrestrial Glacial till Soil Unclassified Glacial till -64.77 -64.05 316351859 579332 140 1 234 4 Unrestricted 14.84 Metagenome 3300011552 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00437 Weill Cornell Medical College 3300011552 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.7 -73.82 23492135 34607 11 0 17 0 SRX822406 0.0 Metagenome 3300070387 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Harvard Forest , Massachusetts, USA - HARV_021-O-20200714-COMP-DNA1 3300070387 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 30135259 91228 62 7 105 12 0.0 Metagenome 2051223001 *Microbiome Permanent Draft Human fecal microbial communities from Orebro University Hospital, Sweden, of individuals with Crohns disease Human fecal microbial communities from Orebro University Hospital, Sweden - Sample 10369 University of Maryland School of Medicine 2051223001 Metagenome Analysis released per JGI data release policy No Yes cmfraser@som.umaryland.edu Claire Fraser No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 59.274717 15.230656 33333791 52430 0 0 0 0 0.0 Metagenome 3300000914 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Eden Landing Ponds, California, USA - A23 M3 (2) DOE Joint Genome Institute (JGI) 3300000914 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 37.840854 -122.289843 43634936 77114 50 0 66 0 SRX3311650 Unrestricted 0.0 Metagenome 3300013872 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In1-11 gowning area SPAdes reassembly (version 2) DOE Joint Genome Institute (JGI) 3300013872 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes NNIvanova@lbl.gov Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 34.1 -118.1 100202420 164374 37 25 57 35 Unrestricted 0.0 Metagenome 3300014249 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 237_L1_2014-7-24 San Diego State University 3300014249 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 2804139 10226 14 9 30 18 0.0 Metagenome 3300002732 *Microbiome Permanent Draft Whitefly associated endosymbiont microbial communities from Neve Yaar, Israel Whitefly associated endosymbiont microbial communities from Neve Yaar, Israel Sample - Wolbechia Contigs 3300002732 Metagenome Analysis gap5 released by JGI data releasing policy No Yes itaiopa6@gmail.com Itai Opatovsky No Host-associated Arthropoda: Insects Unclassified Whole body Unclassified Whitefly associated 32.708101 35.179264 6500904 9648 5 3 10 3 0.0 Metagenome 3300024899 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 69_HOW9 (SPAdes) DOE Joint Genome Institute (JGI) 3300024899 Metagenome Analysis spades v. 3.11.1 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 26623448 45614 19 1 31 1 SRX2720789 Unrestricted 0.0 Metagenome 3300007551 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1549B-3 DOE Joint Genome Institute (JGI) 3300007551 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2322 -123.8817 332585270 653681 367 57 559 95 SRX2753721 Unrestricted 0.0 Metagenome 3300070555 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Talladega National Forest, Alabama, USA - TALL_047-M-20190617-COMP-DNA1 Battelle Memorial Institute 3300070555 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 32.951498 -87.398914 4.94-5.43 9455148 31903 61 2 135 3 0.0 Metagenome 7000000302 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 159268001 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000302 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; snayfach@lbl.gov Ionna Pagani; Natalia Mikhailova; Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 156069466 224126 0 0 0 0 0.0 Metagenome 3300001896 *Microbiome Permanent Draft Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils (2) Grassland soil microbial communities from the White Desert, Gujarat, India, of fatty acid perturbed soils - sample6 3300001896 Metagenome Analysis released by JGI data releasing policy No Yes krishnapatel.1011@gmail.com Krishna Patel No Environmental Terrestrial Unclassified Soil Grasslands Grassland soil 23.850674 69.734802 0 0 0 0 0 0 0.0 Metagenome 3300030118 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine viral communities collected during Tara Oceans survey from station TARA_052 - TARA_R100000231 CEA Genoscope 3300030118 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Updating visibility of taxon created using public NCBI SRA data from private to public -- IMGSUPP-3620 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -16.957 53.9801 263119616 568014 33 0 42 0 0.0 Metagenome 3300005734 *Microbiome Permanent Draft Microbial degradation of oil Seawater microbial communities from Vineyard Sound, MA, USA - crude oil ammended T7 University of Wisconsin, Madison 3300005734 Metagenome Analysis velvet released per JGI data release policy No Yes rsimiste@haverford.edu, rlsimister@gmail.com rachel simister, Rachel Simister No Environmental Aquatic Unclassified Marine Unclassified marine 41.4417 -70.7744 46817608 87936 162 0 193 0 0.0 Metagenome 3300012158 *Microbiome Permanent Draft Attine ant fungus gardens microbial communities from various locations in USA Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ030 MetaG DOE Joint Genome Institute (JGI) 3300012158 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jonathan.klassen@uconn.edu Jonathan L. Klassen No Host-associated Fungi Unclassified Mycelium Unclassified Attine ant fungus gardens 39.7126 -74.5635 204799338 413391 178 6 249 26 SRX3539464 Unrestricted 0.0 Metagenome 3300013560 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100613 University of Pennsylvania 3300013560 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 1279058 3455 9 0 14 0 SRX756481 0.0 Metagenome 3300070369 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Disney Wilderness Preserve, Florida, USA - DSNY_001-M-20180822-COMP-DNA1 3300070369 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Wetlands Soil 4654587 14899 17 4 34 4 0.0 Metagenome 3300006072 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300006072 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 401542871 1042091 245 64 384 106 SRX2566714 Unrestricted 0.0 Metagenome 3300004240 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN DOE Joint Genome Institute (JGI) 3300004240 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 1478260696 3864947 1039 263 1839 616 SRX2518379 Unrestricted 0.0 Metagenome 7000000423 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 158883629 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000423 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 1610282 3422 0 0 0 0 0.0 Metagenome 3300014852 *Microbiome Permanent Draft Danish lakes Microbial communities Depth profiles Lake Almind and Hund Freshwater microbial communities from Lake Almind, Silkeborg, Region Midtjylland, Denmark - ALS_03.08.12_1m re-submission with coverage Odense University Hospital 3300014852 Metagenome Analysis MEGAHIT v1.1.1 released by JGI data releasing policy Yes Yes atreusch@biology.sdu.dk Alexander Treusch No Environmental Aquatic Lake Freshwater Unclassified Freshwater 56.148 9.546 7.5 722229 1848 8 1 8 1 0.0 Metagenome 3300049430 *Microbiome Permanent Draft Freshwater microbial communities from East River watershed, Colorado, USA Freshwater microbial communities from East River, Colorado, USA - Brdu+_Long DOE Joint Genome Institute (JGI) 3300049430 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes ntas@lbl.gov Neslihan Tas No Environmental Aquatic River Freshwater Unclassified Freshwater 38.9222 -106.951 125178926 360687 205 27 318 47 Restricted 10.96 Metagenome 3300003355 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07.2A5-10 DOE Joint Genome Institute (JGI) 3300003355 Metagenome Analysis Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 121047 398 14 0 34 0 SRX2576214 Unrestricted 0.0 Metagenome 3300021113 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 28MAY2007 hypolimnion v8 DOE Joint Genome Institute (JGI) 3300021113 Metagenome Analysis Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 17931747 38953 29 12 41 20 Unrestricted 0.0 Metagenome 3300008414 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 686765762 reassembly Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 3300008414 Metagenome Analysis SPADES 3.6.1 released per Natalia: IMGSUPP-1553 Yes Yes nmikhailova@lbl.gov, ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Natalia Mikhailova, Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 24153383 45928 20 0 42 0 0.0 Metagenome 3300040682 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Central Plains Experimental Range, Central Plains, CO, USA - CPER_046-M-20170710-COMP-DNA1 Battelle Memorial Institute 3300040682 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.81553 -104.7456 1056282 3584 9 0 18 0 0.0 Metagenome 3300045160 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_1_D DOE Joint Genome Institute (JGI) 3300045160 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 151554219 174804 101 1 123 1 Unrestricted 124.76 Metagenome 3300041767 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_131 MetaG AgResearch, New Zealand, Mosgeil 3300041767 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 340235280 739312 171 26 366 26 0.0 Metagenome 3300026754 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01K3-12 (SPAdes) DOE Joint Genome Institute (JGI) 3300026754 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 20461439 69973 87 3 159 6 SRX2576204 Unrestricted 0.0 Metagenome 3300023223 *Microbiome Permanent Draft Microbial communities of deep seafloor calcareous sediment with volcaniclastic crumbs from southwestern Indian Ocean Marine sediment microbial communities from southwestern Indian Ocean - DY125-40IV-SWIR-S018-TVG11 Third Institute of Oceanography, State Oceanic Administration 3300023223 Metagenome Analysis idba v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Sediment Marine Unclassified sediment -35.96667 52.98333 1673040699 3369965 372 18 828 25 0.0 Metagenome 3300036761 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL18G_13-S DOE Joint Genome Institute (JGI) 3300036761 Metagenome Analysis metaspades v. 3.13.0 Yes Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Lake Freshwater Sediment sediment 44.5106 -110.3566 2937534440 4544434 1042 6 1661 6 SRX8280925 Unrestricted 16.1 Metagenome 3300050346 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 718 P1 20-24 DOE Joint Genome Institute (JGI) 3300050346 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.3533 19.047 797151759 1184482 174 9 266 14 Restricted 13.81 Metagenome 3300026321 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026321 Metagenome Analysis spades v. 3.11.1 Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 1061714731 2253447 529 21 820 32 SRX2781862, SRX2781863 Unrestricted 0.0 Metagenome 3300000686 *Microbiome Permanent Draft Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 49 DOE Joint Genome Institute (JGI) 3300000686 Metagenome Analysis Metagenome datasets released to public per Susannah review- June 16, 2014 Yes Yes goodheartd@berkeley.edu Dara Goodheart No Environmental Terrestrial Tropical forest Soil Unclassified Tropical forest soil 18.0 -65.0 5817519 19477 25 0 50 1 SRX4340971 Unrestricted 0.0 Metagenome 3300070644 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Ordway-Swisher Biological Station, Florida, USA - OSBS_003-M-20170711-COMP-DNA1 3300070644 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 3211865 10746 35 6 54 10 0.0 Metagenome 3300001910 *Microbiome Permanent Draft Contaminated subsurface sediment microbial communities from Dusseldorf, Germany, analyzing toluene degradation Contaminated subsurface sediment microbial communities from Dusseldorf, Germany, analyzing toluene degradation - Fos_Dus_5 3300001910 Metagenome Analysis de novo assembly algorithm of CLC Genomics Workbench released by JGI data releasing policy No Yes emnabouhajja@gmail.com Emna Bouhajja No Environmental Terrestrial Sediment Geologic Unclassified Contaminated subsurface sediment 51.2166667 6.46 32048 41 0 0 0 0 0.0 Metagenome 3300039440 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03 v2 DOE Joint Genome Institute (JGI) 3300039440 Metagenome Analysis MEGAHIT v. 1.2.7 Released on PI's request No Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Environmental Terrestrial Grasslands Soil Bulk soil bulk soil -19.28 -43.5919 1116852736 2008671 1011 108 1906 220 SRX4020417 0.0 Metagenome 3300029422 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 008_6_2_stool_1 Institute for Genome Sciences, University of Maryland School of Medicine 3300029422 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 197799400 252889 170 0 252 1 0.0 Metagenome 3300009667 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHG3_MetaG DOE Joint Genome Institute (JGI) 3300009667 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 34.72 135.27 754829288 1349861 719 2 1164 2 SRX2338792 Unrestricted 0.0 Metagenome 3300013109 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 198m, 250-2.7um, replicate b Georgia Genomics Facility 3300013109 Metagenome Analysis IDBA 1.1.1 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 194803982 250911 127 64 137 83 0.0 Metagenome 3300035510 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - Beaver4Cecum1 DOE Joint Genome Institute (JGI) 3300035510 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.18 -122.54 810762731 1444287 1309 35 1775 37 SRX8345947 Unrestricted 22.1 Metagenome 3300009955 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 18 Autonomous University of Barcelona 3300009955 Metagenome Analysis SPAdes-3.8.1-Linux released per JGI data release policy Yes Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.3852246 -0.5132249 5666334 10456 3 0 2 0 0.0 Metagenome 3300029303 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI011702-111 Beijing Genomics Institute (BGI) 3300029303 Metagenome Analysis released Yes Yes snayfach@lbl.gov Stephen Nayfach No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 185380625 278655 157 0 237 0 0.0 Metagenome 3300050134 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 714 PHB-Rim3 1-5 DOE Joint Genome Institute (JGI) 3300050134 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat Soil Mire Peat soil 68.352963 19.04747 435104739 678653 151 28 213 40 Restricted 11.87 Metagenome 3300041892 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_322 MetaG AgResearch, New Zealand, Mosgeil 3300041892 Metagenome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1265940282 2489265 268 22 1094 47 0.0 Metagenome 3300054096 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin02_30_metaG re-annotation DOE Joint Genome Institute (JGI) 3300054096 Metagenome Analysis metaSPAdes v. 3.15.0 Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 1692967489 2964525 729 18 1109 27 SRX3890438 0.0 Metagenome 3300011919 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00234 Weill Cornell Medical College 3300011919 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.84 -73.94 63846736 112028 36 0 38 0 SRX822213 0.0 Metagenome 3300061605 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada - S00JY_0001 Microbiome Insights 3300061605 Metagenome Analysis megahit v. 1.2.9 Yes Yes camillaln@gmail.com; lanoil@ualberta.ca Camilla Nesb?; Brian Lanoil No Environmental Terrestrial Agricultural land, Unclassified Soil Unclassified agricultural soil 53.55389677 -114.2019652 0 to .15 213386445 307890 83 19 139 21 0.0 Metagenome 3300045509 *Microbiome Permanent Draft Florida Reef Tract Coral Disease Outbreak Coral surface microbial communities from Montastraea cavernosa, offshore reef, Ft. Lauderdale, FL, USA - McBH -2 University of Florida 3300045509 Metagenome Analysis MEGAHIT v. 1.1.4 released per PI No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified coral surface 26.16 -80.1 229733028 353279 2 4 2 13 0.0 Metagenome 3300042971 *Microbiome Permanent Draft Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States Anaerobic fermentation bioreactor microbial communities from Madison, Wisconsin, United States - TS43 (downsampled for mapping) DOE Joint Genome Institute (JGI) 3300042971 Metagenome Analysis metaFlye v. 2.8.1-b1676 released based on JGI ITS Yes Yes dnoguera@wisc.edu; nwfortney@gmail.com Daniel Noguera; Nathaniel Fortney Yes 35862918 Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic fermentation bioreactor 43.0738 -89.4139 56357703 55234 75 0 75 0 SRX12729461, SRX12729460, SRX12729462 Unrestricted 0.0 Metagenome 3300040568 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONA_059-M-20170809-COMP-DNA1 Battelle Memorial Institute 3300040568 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.11044 -96.61295 2272587 6812 37 7 66 7 0.0 Metagenome 3300042736 *Microbiome Permanent Draft Microbial symbiotic communities from bathmodiolin mussel gills Mollusc gills microbial communities from cold-seep, northern Gulf of Mexico, USA - Dsc4_c19.1 Re-assembly Christian-Albrechts University of Kiel, Collaborative Research Centre 1182 (CRC 1182) 3300042736 Metagenome Analysis MEGAHIT v 1.2.4 released by JGI data releasing policy No Yes shallam@mail.ubc.ca Steven J. Hallam No Host-associated Mollusca Gills Respiratory system Intracellular Mollusc gills 28.1247 -89.1411 877443708 843519 3 9 7 12 SRX5234784 0.0 Metagenome 3300053087 *Microbiome Permanent Draft Roots, rhizosphere and bulk soil microbial communities from poplar common garden sites in Oregon, USA Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere DOE Joint Genome Institute (JGI) 3300053087 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes doktyczmj@ornl.gov Mitchel Doktycz No Host-associated Plants Endosphere Roots Unclassified Root endosphere 44.588185 -123.192616 501453009 964722 300 57 519 96 Unrestricted 15.61 Metagenome 3300029244 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012058-19 Beijing Genomics Institute (BGI) 3300029244 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 188830534 242409 141 0 218 1 0.0 Metagenome 3300012634 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100459 University of Pennsylvania 3300012634 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 25086837 54814 21 0 35 1 SRX756539 0.0 Metagenome 3300029111 *Microbiome Permanent Draft Host-associated microbial communities from gut and oral samples of Rheumatoid Arthritis patients in China Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021210-25 Beijing Genomics Institute (BGI) 3300029111 Metagenome Analysis released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Host-associated 39.911947 116.4156125 125896862 164744 102 0 154 1 0.0 Metagenome 7000000228 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 158499257 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000228 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Supragingival plaque Human 39.0042816 -77.1012173 160565626 290303 0 0 0 0 0.0 Metagenome 3300049057 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Soil microbial communities from California, United States - C7_B_BS (version 2) DOE Joint Genome Institute (JGI) 3300049057 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Environmental Terrestrial Grasslands Soil Unclassified Soil 38.5326 -121.783 368844866 814850 610 32 1383 39 Unrestricted 0.0 Metagenome 3300006210 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human anterior nares microbial communities from NIH, USA - visit 1, subject 160178356 Baylor College of Medicine, J. Craig Venter Institute, Washington University in St. Louis 3300006210 Metagenome Analysis SPADES v3.6.1 Yes Yes nnivanova@lbl.gov, ipagani@lbl.gov; NNIvanova@lbl.gov Natasha Ivanova, Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Nasal cavity Respiratory system Anterior nares Human 39.0042816 -77.1012173 2799031 8424 8 0 12 0 SRX023305, SRX023304 0.0 Metagenome 3300025179 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP2252 (SPAdes) DOE Joint Genome Institute (JGI) 3300025179 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 10.09 -99.25 78341090 134313 66 18 91 26 SRX1982073 Unrestricted 0.0 Metagenome 3300000137 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample F_10_SI03_10 DOE Joint Genome Institute (JGI) 3300000137 Metagenome Analysis Soap denovo and minimus released based on JGI ITS Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Oceanic Marine Photic zone Marine 48.35 -123.3 145843534 307376 176 60 345 72 Unrestricted 0.0 Metagenome 3300037858 *Microbiome Permanent Draft Tidal flats microbial mat communities from the lagoon near Shannah, Oman Tidal flats microbial mat communities from the lagoon near Shannah, Oman - Site1_salt_MIII_1 DOE Joint Genome Institute (JGI) 3300037858 Metagenome Analysis metaspades v. 3.13.0 Yes Yes dimitri.meier@univie.ac.at Dimitri Meier No Environmental Aquatic Intertidal zone Marine Tidal flats microbial mat 20.7609 58.6478 422012257 767061 163 0 249 1 SRX9169801 Unrestricted 16.26 Metagenome 3300057051 *Microbiome Permanent Draft Soil microbial communities from Satilla River various tidal marshes, Georgia, USA Soil microbial communities from Satilla River estuarine marsh, Georgia, USA - E1L_30_32 DOE Joint Genome Institute (JGI) 3300057051 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Terrestrial Wetlands Soil Unclassified Soil 30.997158 -81.489236 1019306578 1724033 453 0 827 5 Unrestricted 11.69 Metagenome 3300049645 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MG_210818 DOE Joint Genome Institute (JGI) 3300049645 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 570838173 944263 839 2 1230 2 Unrestricted 17.74 Metagenome 3300028053 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_28AUG2017_LD1 DOE Joint Genome Institute (JGI) 3300028053 Metagenome Analysis spades v. 3.11.1 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.39 -85.37 99882247 191099 41 78 67 93 SRX5345914 Unrestricted 16.83 Metagenome 3300032277 *Microbiome Permanent Draft Sediment chemolithoautotrophic microbial communities from various locations Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite DOE Joint Genome Institute (JGI) 3300032277 Metagenome Analysis spades v. 3.13.0 Yes Yes jbeam@bigelow.org; demerson@bigelow.org Jake Beam; David Emerson No Environmental Aquatic Coastal Marine Sediment microbial mat 43.8603 -69.5781 1355190673 3163375 1194 189 2033 308 SRX5822387 Unrestricted 13.71 Metagenome 3300028761 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring microbial mat communities from Yellowstone National Park, WY, United States - YNP-CB-013-3 DOE Joint Genome Institute (JGI) 3300028761 Metagenome Analysis spades v. 3.11.1 Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment microbial mat 44.5761 -110.7905 194465398 333574 101 0 97 0 SRX5356220 Unrestricted 243.98 Metagenome 3300038321 *Microbiome Permanent Draft Liquor fermentation pit mud microbial communities from Chongqing University, China Liquor fermentation pit mud microbial communities from Mianyang, China - Meta-8-3-20-T Chongqing University 3300038321 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Engineered Bioreactor Unclassified Unclassified Unclassified Fermentation pit mud 31.46 104.68 237307704 328660 149 0 245 0 SRX691286 0.0 Metagenome 3300038754 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - SAG1 Michigan State University 3300038754 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 38.0 -124.0 67337716 190252 1 1 3 0 0.0 Metagenome 3300009689 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA4_MetaG DOE Joint Genome Institute (JGI) 3300009689 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 37.43 138.83 853523972 1465219 698 5 1073 11 SRX2158029 Unrestricted 0.0 Metagenome 3300003084 *Microbiome Permanent Draft Marine pico-prymnesiophytes phytoplankton communities from Florida Straits, Gulf of Mexico, Atlantic Ocean Marine pico-prymnesiophytes microbial communities from Florida Straits, Gulf of Mexico, Atlantic Ocean DOE Joint Genome Institute (JGI) 3300003084 Metagenome Analysis Newbler released based on JGI ITS No Yes azworden@mbari.org Alexandra Worden Yes 20668244 Environmental Aquatic Oceanic Marine Unclassified Marine pico-prymnesiophytes 23.359462 -82.379192 2590812 3123 0 0 0 0 Unrestricted 0.0 Metagenome 3300022341 *Microbiome Permanent Draft Metagenomes of microbial mats from hypersaline lakes on Rottnest Island, Australia Microbial mat bacterial and archaeal communities from Lake Vincent, Rottnest Island (WA - Australia) - LVBGP3 JM33 AGRF 3300022341 Metagenome Analysis Unkown released by JGI data releasing policy Yes Yes deirdre.gleeson@uwa.edu.au Deirdre Gleeson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Microbial mat -31.999838 115.51448 29174535 61230 44 1 92 0 0.0 Metagenome 3300011473 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00416 Weill Cornell Medical College 3300011473 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.64 -74.01 18057900 25867 13 0 18 0 SRX822386 0.0 Metagenome 3300066273 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Konza Prairie Biological Station, Prairie Peninsula, KS, USA - KONZ_004-M-20170710-COMP-DNA1 re-annotation Battelle Memorial Institute 3300066273 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.10077 -96.56309 50619122 150645 131 10 242 18 0.0 Metagenome 3300002705 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS DOE Joint Genome Institute (JGI) 3300002705 Metagenome Analysis Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Unclassified Roots Unclassified Arabidopsis root 35.9082 -79.0499 151741376 255739 73 6 150 3 SRX1991092 Unrestricted 0.0 Metagenome 3300049292 *Microbiome Permanent Draft Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA Soil microbial communities from Russell Ranch Agriculture Facility, UC Davis, California, USA - MB25 DOE Joint Genome Institute (JGI) 3300049292 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jmrodrigues@ucdavis.edu Jorge L. Rodrigues No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 38.546389 -121.8744 128644872 327114 318 10 717 14 Unrestricted 20.23 Metagenome 3300040755 *Microbiome Permanent Draft Groundwater microbial community from Coast Range Ophiolite Microbial Observatory, California, USA Groundwater microbial community from Coast Range Ophiolite Microbial Observatory, California, USA - CSWold_6CROd012 Michigan State University 3300040755 Metagenome Analysis IDBA-UD v. 1.1.3-1 released by JGI data releasing policy No Yes lmseyler@gmail.com Lauren Seyler No Environmental Terrestrial Aquifer Deep subsurface Unclassified Groundwater 38.87131 -122.419235 9.8 76 261099613 309544 120 1 145 1 0.0 Metagenome 3300002093 *Microbiome Permanent Draft Soil microbial communities from Rifle, Colorado, USA Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection C1 DOE Joint Genome Institute (JGI) 3300002093 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 23019650 Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Soil 39.534762 -107.782602 129080705 291307 239 6 441 8 SRX1990961 Unrestricted 0.0 Metagenome 3300033487 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A DOE Joint Genome Institute (JGI) 3300033487 Metagenome Analysis spades v. 3.13.0 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Terrestrial Wetlands Soil Unclassified soil 41.3776 -82.5117 4509651863 11447934 2995 14 5657 34 SRX6871103 Unrestricted 7.32 Metagenome 3300026017 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLC_D1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300026017 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Terrestrial Wetlands Soil Unclassified Natural and restored wetlands 38.197102 -122.010033 62502161 151576 122 0 234 2 SRX7180842 Unrestricted 0.0 Metagenome 7000000335 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 1, subject 764042746 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000335 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 51915472 77848 0 0 0 0 0.0 Metagenome 3300014183 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Indonesia to Iowa, USA - IO6 Iowa State University 3300014183 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 8158711 16154 0 2 0 2 SRX1150293 0.0 Metagenome 3300026366 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T75.r2 DOE Joint Genome Institute (JGI) 3300026366 Metagenome Analysis spades v. 3.11.1 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Peat, Wetlands Soil Mire, Peat soil 68.3533 19.0466 71950205 170758 129 17 235 18 SRX4550061 Restricted 63.37 Metagenome 3300037451 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_6 DOE Joint Genome Institute (JGI) 3300037451 Metagenome Analysis metaspades v. 3.13.0 Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 2277981137 3601864 353 39 619 40 SRX9140453 Unrestricted 13.91 Metagenome 3300025835 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer - Crystal Geyser CG17_big_fil_post_rev_8/21/14_2.50 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025835 Metagenome Analysis spades v. 3.11.1 Yes Yes jbanfield@berkeley.edu; jkjarett@lbl.gov Jill Banfield; Jessica Jarett Yes 29379208 Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 661454121 1102132 532 55 749 56 SRX3348987 Unrestricted 0.0 Metagenome 3300027464 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-D (SPAdes) DOE Joint Genome Institute (JGI) 3300027464 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 43.3 -89.38 32461934 106464 99 6 163 9 SRX2575241 Unrestricted 0.0 Metagenome 3300001614 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF015 DOE Joint Genome Institute (JGI) 3300001614 Metagenome Analysis Yes Yes jeffb@bio.umass.edu, jlb@umass.edu Jeffrey Blanhard, Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.209488 4426136 14281 7 2 14 5 SRX2014323 Unrestricted 0.0 Metagenome 3300031706 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from Davis Island wharf, Antarctic Ocean - #36 DOE Joint Genome Institute (JGI) 3300031706 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5781 77.9617 700979769 1411927 312 99 457 188 SRX5650056 Unrestricted 19.24 Metagenome 3300070940 *Microbiome Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Guanica Forest, Puerto Rico, USA - GUAN_049-M-20191002-COMP-DNA1 3300070940 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes No Environmental Terrestrial Forest Soil 8655017 25495 34 0 72 0 0.0 Metagenome 3300069484 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from The University of Kansas Field Station, Prairie Peninsula, KS, USA - UKFS_001-M-20160720-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069484 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 39.04043 -95.19215 40058030 125943 118 3 214 3 0.0 Metagenome 3300014075 *Microbiome Permanent Draft Pacific white shrimp tissue microbial communities imported from various locations to Iowa, USA Pacific white shrimp tissue microbial communities imported from Honduras to Iowa, USA - H5 Iowa State University 3300014075 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Engineered Food production Frozen seafood Seafood product Frozen shrimp Pacific white shrimp tissue 42.0347 -93.62 910303 1713 0 4 0 0 SRX1150286 0.0 Metagenome 3300013647 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100565 University of Pennsylvania 3300013647 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 7602654 17566 42 9 75 22 SRX756189 0.0 Metagenome 3300057176 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie Western Basin, United States Freshwater microbial communities from Lake Erie Western Basin, Ohio, United States - E2021-2010 DOE Joint Genome Institute (JGI) 3300057176 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.70722222 -83.35 455281772 909548 300 124 487 179 Unrestricted 77.61 Metagenome 3300027002 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_O1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027002 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 31.11 -95.15 95337606 234023 208 104 338 170 SRX3311920 Unrestricted 0.0 Metagenome 3300006855 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C host_MetaG DOE Joint Genome Institute (JGI) 3300006855 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes binskeep@montana.edu William Inskeep, William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring 44.7219 -110.7021 106590870 300771 95 1 164 0 SRX2917370 Unrestricted 0.0 Metagenome 3300037260 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 716 P1 1-5 DOE Joint Genome Institute (JGI) 3300037260 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3545 19.0465 733095192 1623636 327 51 585 59 SRX8144879 Unrestricted 7.19 Metagenome 3300012930 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly) DOE Joint Genome Institute (JGI) 3300012930 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 3536633475 7439124 1644 91 2812 154 SRX5781656, SRX5781655, SRX5781659, SRX5781658, SRX5781657, SRX5781663, SRX5781662, SRX5781661, SRX5781660 Unrestricted 0.0 Metagenome 3300038514 *Microbiome Permanent Draft Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China Mangrove sediment microbial communities from Hanjiang river estuary, Shantou, China - SA4 v2 Sun Yat-Sen University 3300038514 Metagenome Analysis Megahit v. 1.1.2 released by JGI data releasing policy No Yes yuxiaoli92@163.com Xiaoli Yu No Environmental Aquatic Intertidal zone Marine Mangrove sediment mangrove sediment 23.45 116.43 97312111 129678 47 13 89 20 0.0 Metagenome 3300020397 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000123 (ERX556052-ERR599075) CEA Genoscope 3300020397 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine 6.0124 73.8985 857449749 2261481 462 22 724 36 0.0 Metagenome 3300039889 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Klemme Range Research Station, Southern Plains, OK, USA - OAES_045-M-20170627-COMP-DNA1 Battelle Memorial Institute 3300039889 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 35.41059 -99.05879 23126122 64548 78 8 151 20 0.0 Metagenome 3300001202 *Microbiome Permanent Draft Macroalgal surface microbial communities Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY72 J. Craig Venter Institute (JCVI) 3300001202 Metagenome Analysis release per submitter's request No Yes a.rothschulze@unsw.edu.au Alexandra Roth Schulze, Alexandra Jazmin Roth Schulze No Host-associated Algae Ectosymbionts Green algae Unclassified Macroalgal surface -33.966629 151.166614 959642480 3496956 212 142 577 273 0.0 Metagenome 3300007658 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - metaG 1555A-3 DOE Joint Genome Institute (JGI) 3300007658 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes simonh@ohsu.edu, simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.2024 -123.9409 242807261 485595 359 46 567 90 SRX2753732 Unrestricted 0.0 Metagenome 3300050551 *Microbiome Permanent Draft Alder tree fresh and decomposed leaves microbial communities from Olympic Peninsula, Washington, USA Alder tree leaf microbial communities from Olympic Peninsula, Washington, USA - D0_SEK2_4 DOE Joint Genome Institute (JGI) 3300050551 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes sjackrel@ucsd.edu Sara Jackrel No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Alder tree leaf 48.165 -124.245 260038901 338462 24 20 43 22 Unrestricted 51.01 Metagenome 3300014932 *Microbiome Permanent Draft Danish lakes Microbial communities Depth profiles Lake Almind and Hund Freshwater microbial communities from Lake Hund, Silkeborg, Region Midtjylland, Denmark - HUS_14.08.12_4m re-submission with coverage Odense University Hospital 3300014932 Metagenome Analysis MEGAHIT v1.1.1 released by JGI data releasing policy Yes Yes atreusch@biology.sdu.dk Alexander Treusch No Environmental Aquatic Lake Freshwater Unclassified Freshwater 56.04 9.54 5 49674412 107299 45 12 85 15 0.0 Metagenome 3300039214 *Microbiome Permanent Draft Lake microbial communities from Canada Sediment microbial communities from the Atlantic Highlands Ecozone, Canada - bottom sediment 17-054 metaSPAdes Genome Quebec 3300039214 Metagenome Analysis SPAdes v. 3.11.1 metaSPAdes mode released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment Sediment 47.694086 -67.642841 1226136967 3077170 739 6 1517 2 0.0 Metagenome 3300012463 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100482 University of Pennsylvania 3300012463 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 10293002 28394 14 0 26 0 SRX756516 0.0 Metagenome 3300023185 *Microbiome Permanent Draft Microbial communities of deep seafloor calcareous sediment with volcaniclastic crumbs from southwestern Indian Ocean Marine sediment microbial communities from southwestern Indian Ocean - DY125-40IV-SWIR-S006-TVG06 Third Institute of Oceanography, State Oceanic Administration 3300023185 Metagenome Analysis idba v. 1.1.1 released by JGI data releasing policy No Yes limeng848@gmail.com MENG LI No Environmental Aquatic Sediment Marine Unclassified sediment -37.83333 49.8 71586442 115919 53 8 56 8 0.0 Metagenome 3300037332 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline water microbial communities from a lake in Antarctica - Pendant Lake #928 DOE Joint Genome Institute (JGI) 3300037332 Metagenome Analysis metaspades v. 3.13.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4599 78.2429 456431858 787996 219 49 308 84 SRX9174275 Unrestricted 20.29 Metagenome 3300007346 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 DOE Joint Genome Institute (JGI) 3300007346 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes chenf@umces.edu, bcampb7@clemson.edu; chenf@umces.edu Feng Chen, Barbara Campbell; Feng Chen Yes 33727395 Environmental Aquatic Coastal Marine Unclassified Aqueous 39.124826 -75.260873 660379632 1567213 57 0 66 0 SRX3786003, SRX2745129, SRX3786002 Unrestricted 0.0 Metagenome 3300032524 *Microbiome Permanent Draft Meromitic Lake A Freshwater microbial communities from meromitic lake A, Ellesmere Island, Canada - Sample 22m Laval University 3300032524 Metagenome Analysis Megahit v. 1.0.5 released by JGI data releasing policy Yes Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 82.99445 -75.443367 601224759 993122 229 3 405 7 0.0 Metagenome 3300007917 *Microbiome Permanent Draft Anaerobic oil degrading microbial communities from River Tyne estuarine sediment Microbial communities from sediment of the River Tyne Estuary, UK - Pasteurized_176d_1 University of Liverpool 3300007917 Metagenome Analysis IDBA-DB released per JGI data release policy No Yes ana.suarez-suarez@ncl.ac.uk, ana.suarez-suarez@ncl.ac.uk; ian.head@ncl.ac.uk Ana Su?rez-Su?rez, Ana Suarez-Suarez; Ian Head No Environmental Aquatic Unclassified Sediment Unclassified sediment 54.9632021 -1.6348029 90553585 167582 94 2 186 0 0.0 Metagenome 3300001922 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) Marine microbial communities from Polynesia - GS046 J. Craig Venter Institute (JCVI) 3300001922 Metagenome Analysis No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Oceanic Marine Unclassified Marine -9.571111 -131.49167 336890 629 0 0 2 0 0.0 Metagenome 2222084006 *Microbiome Finished Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - oil_dispersant_7 Alabama State University 2222084006 Metagenome Analysis GS de novo assembly released per JGI data release policy No Yes panoble@washington.edu Peter A Noble No Environmental Aquatic Oceanic Marine Oil-contaminated Marine 30.15 -88.446 7.8 72555975 211116 102 0 201 0 0.0 Metagenome 3300029410 *Microbiome Permanent Draft Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 016_6_6_stool_2 Institute for Genome Sciences, University of Maryland School of Medicine 3300029410 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 39.28846264 -76.62594594 174485273 225304 137 0 194 0 0.0 Metagenome 3300025540 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-3-D (SPAdes) DOE Joint Genome Institute (JGI) 3300025540 Metagenome Analysis spades v. 3.11.1 Yes Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 212031595 428531 208 27 303 40 SRX2568351 Unrestricted 0.0 Metagenome 3300035522 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - Beaver6Rectum1 DOE Joint Genome Institute (JGI) 3300035522 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Rectum rectum 49.18 -122.54 2217433744 3150682 563 29 834 42 SRX8346781 Unrestricted 6.87 Metagenome 3300003401 *Microbiome Permanent Draft Wastewater bioreactor microbial communities from Cape Town, South Africa Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_500_plan DOE Joint Genome Institute (JGI) 3300003401 Metagenome Analysis MEGAHIT v. 0.2.0 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 26031303, 28139919, 28386012 Engineered Bioreactor Anaerobic-Aerobic Thiocyanate-remediating Unclassified Wastewater bioreactor -33.927 18.452665 255304746 405286 121 22 224 25 SRX2705195, SRX2705194 Unrestricted 0.0 Metagenome 3300059433 *Microbiome Permanent Draft Sorghum rhizosphere and bulk soil microbial communities from University of Arizona Maricopa Agricultural Center, AZ, USA Soil microbial communities from sorghum plot in University of Arizona Maricopa Agricultural Center, AZ, USA - plot11_0-15_20210709 DOE Joint Genome Institute (JGI) 3300059433 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Agricultural land Soil Unclassified Soil 33.07735 -111.974819 480127154 1187609 660 21 1211 26 Unrestricted 7.57 Metagenome 3300061127 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Surface microbial communities from International Space Station, USA module - IIF1SW PMA-treated Jet Propulsion Laboratory, California Institute of Technology 3300061127 Metagenome Analysis Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 34.2013125 -118.7317025 71653296 88496 9 4 14 8 SRX2249344, SRX2249338, SRX3808539, SRX3808523 0.0 Metagenome 7000000094 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human stool microbial communities from NIH, USA - visit 2, subject 159591683 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000094 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov Ionna Pagani; Natalia Mikhailova No Host-associated Mammals: Human Large intestine Digestive system Fecal Human 39.0042816 -77.1012173 52453049 83947 0 0 0 0 0.0 Metagenome 3300023073 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S154-409C-5 DOE Joint Genome Institute (JGI) 3300023073 Metagenome Analysis spades v. 3.11.1 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified soil 43.3 -89.38 239060037 640691 494 27 876 48 SRX4799016 Unrestricted 7.29 Metagenome 3300017921 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Subsurface microbial communities from deep shales in Ohio, USA - hydraulic fracturing test GB_TF_A DOE Joint Genome Institute (JGI) 3300017921 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 29941576 Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back Fracking water 40.178 -81.073 23612322 36684 88 0 161 0 SRX3937640 Unrestricted 355.03 Metagenome 3300025296 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025296 Metagenome Analysis spades v. 3.11.1 Yes Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 38.48 10.16 262232268 493646 103 0 105 1 SRX2753802 Unrestricted 0.0 Metagenome 3300006902 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_A DOE Joint Genome Institute (JGI) 3300006902 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 1345093694 2986475 1218 98 2026 147 SRX3194948 Unrestricted 0.0 Metagenome 3300036899 *Microbiome Permanent Draft Soil microbial communities from a coastal freshwater wetland in North Carolina, United States Soil microbial communities from coastal freshwater wetland in North Carolina, United States - 16NFC DOE Joint Genome Institute (JGI) 3300036899 Metagenome Analysis metaspades v. 3.13.0 Yes Yes peraltaa@ecu.edu Ariane Peralta No Environmental Terrestrial Wetlands Soil Unclassified soil 35.8959 -76.1658 729689611 1201435 235 5 448 11 SRX8388151 Unrestricted 13.1 Metagenome 3300039141 *Microbiome Permanent Draft Freshwater microbial communities from various watersheds in Southwestern British Columbia, Canada Freshwater microbial communities from Southwestern British Columbia, Canada - PDS_075 University of British Columbia 3300039141 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 49.0 -123.0 18327639 37573 47 0 71 0 0.0 Metagenome 3300039867 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations Subpolar coniferous forest soil microbial communities from Helsinki, Finland - 025_R1_022417 University of Maryland 3300039867 Metagenome Analysis MetaSpades v. 3.1; JGI custom assembly Copeland et. al released by JGI data releasing policy Yes Yes syarwood@umd.edu Stephanie Yarwood No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil Subpolar coniferous forest soil 60.24609722 25.17080556 25588279 33581 35 17 41 27 0.0 Metagenome 3300048592 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Sediment microbial communities from brackish wetlands in San Jose, California, USA - ROC14_2 DOE Joint Genome Institute (JGI) 3300048592 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Intertidal zone Marine Salt marsh sediment Sediment 37.427598 -121.938678 2261986874 3224837 823 75 1130 116 Unrestricted 19.78 Metagenome 3300028782 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193 DOE Joint Genome Institute (JGI) 3300028782 Metagenome Analysis spades v. 3.11.1 Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040592 -106.9484972 622410677 1695903 431 21 867 38 SRX5354725 Unrestricted 10.31 Metagenome 3300070499 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Smithsonian Conservation Biology Institute, Virginia, USA - SCBI_067-M-20180717-COMP-DNA1 Battelle Memorial Institute 3300070499 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes crossh@battelleecology.org Hugh Cross No Environmental Terrestrial Forest Soil Unclassified Terrestrial soil 38.893949 -78.135536 6.07-6.53 1785884 5751 34 1 52 2 0.0 Metagenome 3300027779 *Microbiome Permanent Draft Marine microbial communities from western Arctic Ocean Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027779 Metagenome Analysis spades v. 3.11.1 Yes Yes david.walsh@concordia.ca David Walsh Yes 30271971 Environmental Aquatic Oceanic Marine Unclassified Marine 75.235 -150.0691 878621519 1655394 280 126 525 213 SRX2997313 Unrestricted 0.0 Metagenome 3300020502 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 29OCT2010 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020502 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 89106005 179042 99 29 160 42 SRX1989296 Unrestricted 0.0 Metagenome 3300041961 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS914_Anemone_DNA SE_2020 Marine Biological Laboratory 3300041961 Metagenome Analysis IDBA_UD v. 1.1.3 released by JGI data releasing policy No Yes cfortunato@gmail.com; randerson@carleton.edu; elks@mit.edu Caroline Fortunato; Rika Anderson; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse vent fluid, hydrothermal vents 45.933177 -130.013868 583619087 1242165 639 11 1148 22 0.0 Metagenome 3300038496 *Microbiome Permanent Draft Marine harbor viral communities from the Pacific and Indian Ocean Marine harbor viral communities from the Pacific Ocean - ILB3 Michigan State University 3300038496 Metagenome Analysis Custom JGI assembly, Nielsen et. al. Yes Yes No Environmental Aquatic Harbor Marine Unclassified Marine harbor 33.75307 -118.2206 26116141 71311 0 0 2 0 0.0 Metagenome 3300050711 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Lake water viral communities from Sandhills, Nebraska, United States - NSL_Island_2019_V DOE Joint Genome Institute (JGI) 3300050711 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.7342 -102.4104 368461283 889643 28 0 49 0 Unrestricted 88.37 Metagenome 3300036967 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - AD1 48 III DOE Joint Genome Institute (JGI) 3300036967 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sean.crowe@ubc.ca Sean Crowe No Engineered WWTP Unclassified Wastewater Unclassified wastewater 49.1151 -123.147 543008764 992503 590 3 891 7 SRX8377295 Unrestricted 23.72 Metagenome 3300022780 *Microbiome Permanent Draft Sponge microbes in a high CO2 world Microbial communities of marine sponge Carteriospongia foliascens from Great Barrier Reef, Australia - CA8 Version 2 University of New South Wales 3300022780 Metagenome Analysis IDBA-UD v. 1.1.1 released by Holly Bennett Yes Yes h.luter@aims.gov.au Holly Bennett No Host-associated Porifera Unclassified Sponge Unclassified Marine -18.833 147.683 7.6 28912155 43587 21 2 20 5 0.0 Metagenome 3300042590 *Microbiome Permanent Draft Termite gut microbial communities from various locations Termite gut microbial communities of Cryptotermes cavifrons from Fort Lauderdale Research & Education Center, Florida, USA - Cc175 Eurofins MWG Operon 3300042590 Metagenome Analysis MEGAHIT v. 1.2.8 released by JGI data releasing policy No Yes brune@mpi-marburg.mpg.de Andreas Brune No Host-associated Arthropoda: Insects Gut Digestive system Unclassified Termite gut 26.0839646 -80.2393931 866825020 1058635 210 37 209 72 0.0 Metagenome 3300040626 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Onaqui, Great Basin, UT, USA - ONAQ_002-M-20170625-COMP-DNA1 Battelle Memorial Institute 3300040626 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 40.17759 -112.45244 1268270 4193 15 0 18 0 0.0 Metagenome 3300032311 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains Ecozone, Canada - Lake 08-152 Genome Quebec 3300032311 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 44.603322 -76.471579 728427640 1492428 382 78 627 161 0.0 Metagenome 3300009802 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N3_50_60 DOE Joint Genome Institute (JGI) 3300009802 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37379502 -119.2722385 103767269 250209 196 6 397 15 SRX2523196 Unrestricted 0.0 Metagenome 3300039999 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from San Joaquin Experimental Range, Pacific Southwest, CA, USA - SJER_003-M-20170316-COMP-DNA1 Battelle Memorial Institute 3300039999 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.10878 -119.73228 16855207 48217 96 10 172 13 0.0 Metagenome 3300046534 *Microbiome Permanent Draft Seawater and ice microbial communities from Arctic Ocean Melted sea ice microbial communities from Arctic Ocean - MOSAiC PS122_411 DOE Joint Genome Institute (JGI) 3300046534 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Sea ice 87.4122 93.2151 1915445918 2554937 477 263 583 325 Unrestricted 29.12 Metagenome 3300037150 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peatland microbial communities from Stordalen Mire, Sweden - 713 CPN2-1-X0 DOE Joint Genome Institute (JGI) 3300037150 Metagenome Analysis metaspades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3628 19.0528 793306954 1470724 267 5 448 9 SRX8166971 Unrestricted 8.96 Metagenome 3300041041 *Microbiome Permanent Draft Marine rearing water microbial communities from tanks in shrimp farm, Bang Phra, Thailand Marine rearing water microbial communities from a tank in shrimp farm, Bang Phra, Thailand - T5D2 IDBA-UD 60x Baseclear 3300041041 Metagenome Analysis IDBA-UD v. 1.1.3. released by JGI data releasing policy No Yes jasmine.heyse@ugent.be Jasmine Heyse No Environmental Aquatic Unclassified Aquaculture Unclassified Marine rearing water 13.224431 100.941245 7.8-8.2 203076385 325660 143 12 250 9 0.0 Metagenome 3300032103 *Microbiome Permanent Draft Microbial communities from the deep biosphere Alkaline spring water microbial communities from Santa Elena Complex in Costa Rica - Spring9 re-assembly The Marine Biological Laboratory 3300032103 Metagenome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Alkaline Non-marine Saline and Alkaline Unclassified water 10.8939 -85.7273 616485984 1515482 616 75 1170 120 SRX2065075 0.0 Metagenome 3300045426 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera ecozone, Canada - Lake 11-488 Genome Quebec 3300045426 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 53.938458 -125.907128 1082650044 2391351 370 88 592 180 0.0 Metagenome 3300043363 *Microbiome Permanent Draft Soil microbial communities from watershed of Upper East River, Colorado, USA Soil microbial communities from watershed of Upper East River, Colorado, USA - 254-ER18-SC-SDNA DOE Joint Genome Institute (JGI) 3300043363 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Watershed Soil Unclassified Soil 38.9621 -107.0293 275183185 790264 381 11 667 33 Unrestricted 7.15 Metagenome 3300018075 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1 DOE Joint Genome Institute (JGI) 3300018075 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes jbanfield@berkeley.edu Jill Banfield Yes 31380022 Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 .5 814481700 1727202 546 17 992 24 SRX3939694 Unrestricted 5.54 Metagenome 3300043024 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - Beaver6Cecum1 (coverage test 2Gb) (version 2) DOE Joint Genome Institute (JGI) 3300043024 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.18 -122.54 129887334 258335 304 21 466 22 SRX8346484 Unrestricted 72.02 Metagenome 3300049629 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Freshwater microbial communities from Lake Mendota, Wisconsin, United States - TYMEFLIES-ME29Sep2018-rr0899 (version 2) DOE Joint Genome Institute (JGI) 3300049629 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.0995 -89.4045 877057225 1322553 393 53 542 73 Unrestricted 0.0 Metagenome 3300027378 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 PM (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027378 Metagenome Analysis spades v. 3.11.1 Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 37.931388 -122.021761 189498947 527596 388 37 737 54 SRX2574369 Unrestricted 0.0 Metagenome 3300027633 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027633 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 38.88 -120.64 333334921 792296 283 39 569 83 SRX1985907, SRX1985908 Unrestricted 0.0 Metagenome 3300028544 *Microbiome Permanent Draft Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain Human saliva viral communities from oral cavities of IgA immunodeficiency people from Alicante,Spain - individual 9 Selected contigs with viral hallmark genes 2 Autonomous University of Barcelona 3300028544 Metagenome Analysis SPAdes v. 3.10 released by JGI data releasing policy No Yes m.martinez@ua.es Manuel Martinez Garcia No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral cavity 38.5 -0.5 1207203 1877 0 0 0 0 0.0 Metagenome 3300046450 *Microbiome Permanent Draft Seawater and ice microbial communities from Arctic Ocean Seawater microbial communities from Arctic Ocean - MOSAiC PS122_327 DOE Joint Genome Institute (JGI) 3300046450 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Seawater 87.5518 102.0858 1303657223 1951682 484 278 662 354 Unrestricted 19.46 Metagenome 3300003808 *Microbiome Permanent Draft Freshwater microbial communities from Crystal Bog lake, Wisconsin, USA Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Aug07 DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) 3300003808 Metagenome Analysis SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.0072 -89.6063 30123695 71366 52 7 94 13 SRX2565367 Unrestricted 0.0 Metagenome 3300036989 *Microbiome Permanent Draft Soil microbial communities from a coastal freshwater wetland in North Carolina, United States Soil microbial communities from coastal freshwater wetland in North Carolina, United States - 10Pre DOE Joint Genome Institute (JGI) 3300036989 Metagenome Analysis metaspades v. 3.13.0 Yes Yes peraltaa@ecu.edu Ariane Peralta No Environmental Terrestrial Wetlands Soil Unclassified soil 35.8956 -76.1655 357641571 641877 202 14 397 17 SRX8387715 Unrestricted 15.46 Metagenome 3300029734 *Microbiome Permanent Draft Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36981 Beijing Genomics Institute (BGI) 3300029734 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 51.5 -0.12 187360518 224146 145 0 216 0 0.0 Metagenome 3300040172 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Soaproot Saddle, Pacific Southwest, CA, USA - SOAP_005-M-20180529-COMP-DNA1 Battelle Memorial Institute 3300040172 Metagenome Analysis JGI custom assembly Copeland et. al Released on PI's request Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 37.03337 -119.26219 8323012 25526 50 5 71 6 0.0 Metagenome 3300042246 *Microbiome Permanent Draft Sludge and produced water microbial communities from membrane bioreactor in Denver, Colorado, USA Sludge microbial communities from membrane bioreactor in Denver, Colorado, USA - MBR_D307_1 DOE Joint Genome Institute (JGI) 3300042246 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes sgtringe@lbl.gov Susannah Tringe No Engineered Bioreactor Unclassified MBR (Membrane bioreactor) Sludge Sludge 39.7823 -104.9101 189004244 276139 155 7 202 11 Unrestricted 69.59 Metagenome 3300032236 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime Ecozone, Canada - Lake 07-003 Genome Quebec 3300032236 Metagenome Analysis Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.238761 -62.883752 482122019 843500 179 66 283 110 0.0 Metagenome 3300000176 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion v1 DOE Joint Genome Institute (JGI) 3300000176 Metagenome Analysis SOAPdenovo, Newbler, Minimus2 released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 46.0412 -89.6864 120302701 255240 63 24 122 41 Unrestricted 0.0 Metagenome 3300014739 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from newborn in Denmark - 577_B Beijing Genomics Institute (BGI) 3300014739 Metagenome Analysis released per Natalia: IMGSUPP-1553 Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 12514133 13819 10 0 11 0 ERX491229 0.0 Metagenome 3300012850 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched mosquito-associated microbial communities from UW Madison campus, WI, USA - HID1973I_E0 MG DOE Joint Genome Institute (JGI) 3300012850 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated Arthropoda: Insects Unclassified Digestive system Unclassified insecta 43.073 -89.4011 98758389 167939 95 0 140 0 SRX3564457 Unrestricted 0.0 Metagenome 3300002242 *Microbiome Permanent Draft Marine sediment microbial communities from the Hellenic Volcanic Arc Marine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey mat DOE Joint Genome Institute (JGI) 3300002242 Metagenome Analysis Newbler and/or Velvet released based on JGI ITS Yes Yes nckyrpides@lbl.gov Nikos Kyrpides No Environmental Aquatic Hydrothermal vents Marine Sediment Marine sediment 36.5 25.45 1445071903 3896498 1246 39 2233 40 Unrestricted 0.0 Metagenome 3300049043 *Microbiome Finished Freshwater microbial communities from Lagoa Vermelha, Apiai, Sao Paulo, Brazil Freshwater microbial communities from Lagoa Vermelha, Apiai, Sao Paulo, Brazil - V00 v.2 Universidade de Sao Paulo 3300049043 Metagenome Analysis metaFlye v. 2.9 No Yes stevani@iq.usp.br; samir.atum@usp.br Cassius Stevani; Samir Atum No Environmental Aquatic Pond Freshwater Unclassified freshwater -24.388611 -48.530556 101980612 173435 38 11 37 16 0.0 Metagenome 3300011720 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01084 Weill Cornell Medical College 3300011720 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.67 -73.96 14580308 23111 11 0 23 0 SRX823039 0.0 Metagenome 3300017966 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG DOE Joint Genome Institute (JGI) 3300017966 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 4.2396 -73.2024 2432690769 5505097 1730 14 3202 22 SRX3936917 Unrestricted 5.06 Metagenome 3300028967 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 12 months in Denmark - 640_12M Beijing Genomics Institute (BGI) 3300028967 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 60611855 77812 52 0 95 0 ERX491295 0.0 Metagenome 3300045815 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_2_D DOE Joint Genome Institute (JGI) 3300045815 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 131741991 160198 68 0 98 3 Unrestricted 126.33 Metagenome 3300026496 *Microbiome Permanent Draft Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A DOE Joint Genome Institute (JGI) 3300026496 Metagenome Analysis spades v. 3.11.1 Yes Yes david.myrold@oregonstate.edu.deleted David Myrold No Environmental Terrestrial Temperate forest Soil Bulk soil soil 44.23 -122.22 202161113 503950 213 27 368 40 SRX4801832 Unrestricted 10.34 Metagenome 3300002424 *Microbiome Permanent Draft Human fecal microbial communities from Valencia, Spain, of mother-infant pairs Human fecal microbial communities from Valencia, Spain, of mother-infant pairs - MIP21-I1 3300002424 Metagenome Analysis No Yes kyvovas@gmail.com Yvonne Valles No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 0 0 0 0 0 0 0.0 Metagenome 3300002859 *Microbiome Permanent Draft Halophilic microbial communities from diverse ecological areas that have bioremediating capacity Dehalobacter sp. FTH1 + Unknown organism coculture 3300002859 Metagenome Analysis released by JGI data releasing policy No Yes hauke.smidt@wur.nl Hauke Smidt No Engineered Lab enrichment Unclassified Unclassified Unclassified Halophilic 6329361 6151 5 0 2 0 0.0 Metagenome 3300045868 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from the Seven Mile Hole Area, Yellowstone National Park, WY, United States - MSUNE_MH_03 University of Wisconsin, Madison 3300045868 Metagenome Analysis SPAdes v. 3.14.1 released by Daniel Colman Yes Yes daniel.colman@montana.edu Daniel Colman No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.75154 -110.4151 36692592 43815 21 0 18 1 0.0 Metagenome 3300040809 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Estuary water microbial communities from Narragansett Bay, Rhode Island, USA - E3_AmbA DOE Joint Genome Institute (JGI) 3300040809 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.9078 -71.5683 386088403 622800 264 103 374 126 SRX9641339 Unrestricted 17.01 Metagenome 3300059325 *Microbiome Permanent Draft Forest soil microbial communities from various locations in the USA Soil microbial communities from coniferous forest in Wyoming, USA - R_H2_S1 DOE Joint Genome Institute (JGI) 3300059325 Metagenome Analysis metaspades v. 3.15.2 released based on JGI ITS Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 41.02722 -106.63529 2180842844 3376394 704 112 1064 154 Unrestricted 30.2 Metagenome 3300028047 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300028047 Metagenome Analysis spades v. 3.11.1 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 46.42 -83.37 1943906049 4374960 808 94 1623 188 SRX1987173 Unrestricted 0.0 Metagenome 3300020489 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 21JUL2008 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020489 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 53271928 109781 46 10 85 15 SRX3310674 Unrestricted 0.0 Metagenome 3300005422 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV43 DOE Joint Genome Institute (JGI) 3300005422 Metagenome Analysis MEGAHIT v. 0.2.0 Released because the 3 months embargo/review period expired Yes Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Oceanic Marine Unclassified Marine 584363615 1469786 591 6 1087 6 SRX2781816 Unrestricted 0.0 Metagenome 3300025667 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_100m_DNA (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025667 Metagenome Analysis spades v. 3.11.1 Yes Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 402921234 840433 352 34 524 54 Unrestricted 0.0 Metagenome 3300025955 *Microbiome Permanent Draft Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D2 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025955 Metagenome Analysis spades v. 3.11.1 released Yes Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Marine Unclassified Natural and restored wetlands 38.000706 -121.624306 85751019 191073 135 0 250 1 SRX7144825 Unrestricted 0.0 Metagenome 3300001729 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine viral communities from the Deep Pacific Ocean - MSP-91 DOE Joint Genome Institute (JGI) 3300001729 Metagenome Analysis Yes Yes mbsulli@gmail.com, mbsulli@gmail.com; sacinas@icm.csic.es Matthew Sullivan, Matthew Sullivan; Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -5.7497 -170.7411 60505619 140710 87 0 144 0 SRX4915143 Unrestricted 0.0 Metagenome 3300043527 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield ecozone, Canada - Lake 06-305 Genome Quebec 3300043527 Metagenome Analysis metaSPAdes v. 3.13.0 Making public as per David Walsh's request GOLD-2487 - TBKR 01/31/2024 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 49.674081 -93.762805 1142441677 2600420 482 159 836 259 0.0 Metagenome 3300029486 *Microbiome Permanent Draft Human fecal microbial communities from Shanghai Jiao Tong University, China Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001903-93 Beijing Genomics Institute (BGI) 3300029486 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 31.2123446 121.4684853 181042114 216131 134 0 205 0 0.0 Metagenome 3300001235 *Microbiome Permanent Draft Environmental microbial communities from Fremont, CA and La Paraguera, Puerto Rico Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and P1 (3) DOE Joint Genome Institute (JGI) 3300001235 Metagenome Analysis Released by Nikos bc they passed the 6 months embargo date Yes Yes jakimbrel@lbl.gov, kimbrel1@llnl.gov Jeff Kimbrel No Environmental Aquatic Unclassified Marine Unclassified Aerobic enrichment media 17.967317 -67.018833 49791961 86891 47 0 66 0 SRX3311644 Unrestricted 0.0 Metagenome 3300033501 *Microbiome Permanent Draft Lab enriched peat soil microbial communities from two peatlands near Ithaca, NY, United States Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF12FN SIP fraction DOE Joint Genome Institute (JGI) 3300033501 Metagenome Analysis spades v. 3.13.0 Yes Yes rer26@cornell.edu Ruth Richardson No Environmental Terrestrial Wetlands Soil Peat peat soil 42.3286 -76.4792 184946014 434454 120 0 168 0 SRX6469184 Unrestricted 13.34 Metagenome 3300014905 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01300 Weill Cornell Medical College 3300014905 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.85 -73.85 17937125 33753 14 0 22 0 SRX823240 0.0 Metagenome 3300025689 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHG3_MetaG (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300025689 Metagenome Analysis spades v. 3.11.1 Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 34.72 135.27 534760451 893569 420 1 702 0 SRX2338792 Unrestricted 0.0 Metagenome 3300020467 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Marine microbial communities from Tara Oceans - TARA_B100000945 (ERX555966-ERR598957) CEA Genoscope 3300020467 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes william@genoscope.cns.fr; tully.bj@gmail.com; mbsulli@email.arizona.edu William William; Benjamin Tully; Matthew Sullivan Yes 25999513 Environmental Aquatic Unclassified Marine Unclassified Marine -23.1569 -129.5943 1481283466 3807125 646 92 1364 217 0.0 Metagenome 3300000622 *Microbiome Permanent Draft Abyssal marine microbial communities from the Mediterranean Sea Abyssal marine microbial communities from the Mediterranean Sea - kryos-F3 Fidelity Systems Inc 3300000622 Metagenome Analysis released per JGI data release policy No Yes francesco.smedile@iamc.cnr.it, francesco.smedile14@gmail.com francesco smedile, Francesco Smedile No Environmental Aquatic Oceanic Marine Abyssal plane Abyssal marine 34.93 22.22 0 0 0 0 0 0 0.0 Metagenome 3300033399 *Microbiome Permanent Draft Metagenomic SGS 2x251 Riparian soil bacterial communities from Cottonwood Creek Park, Encinitas, CA, USA - R8 Illumina 3300033399 Metagenome Analysis SPAdes v. 3.9.0 released by JGI data releasing policy No Yes kthai@illumina.com Kevin Thai No Environmental Terrestrial Unclassified Soil Riparian soil Soil 33.051604 -117.289363 790117701 2017432 701 33 896 48 0.0 Metagenome 3300042777 *Microbiome Permanent Draft Riverbed sediment microbial communities from the Columbia River, Washington, USA Riverbed sediment microbial communities from areas with no vegetation in Columbia River, Washington, USA - GW-RW N1_0_10 NMDC pilot DOE Joint Genome Institute (JGI) 3300042777 Metagenome Analysis Metaspades v. 3.13.0 NMDC pilot metagenomes should be public Yes Yes james.stegen@pnnl.gov James Stegen No Environmental Aquatic River Freshwater Sediment riverbed sediment 46.37380143 -119.2723688 104567589 263955 164 5 301 4 SRX2523200 0.0 Metagenome 3300005111 *Microbiome Permanent Draft Mesophilic and thermophilic cellulose-adapted microbial communities from the Joint BioEnergy Institute, California, USA Cellulose-adapted microbial communities from the Joint BioEnergy Institute, USA - Passage D2F06 DOE Joint Genome Institute (JGI) 3300005111 Metagenome Analysis MEGAHIT v. 0.2.0 Released because they 6 months embargo/review period expired Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Bioreactor Unclassified Continuous culture Unclassified Cellulose-adapted 37.8408 -122.2896 50016243 70399 84 0 138 0 SRX3195126 Unrestricted 0.0 Metagenome 3300027394 *Microbiome Permanent Draft Thawing permafrost microbial communities from the Arctic, studying carbon transformations Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712P3D (version 2) DOE Joint Genome Institute (JGI) 3300027394 Metagenome Analysis spades v. 3.11.1 Yes Yes rich.270@osu.edu Virginia Rich Yes 30013118 Environmental Terrestrial Wetlands Soil Permafrost Thawing permafrost 68.3534 19.0472 93828420 294842 49 2 75 12 SRX2774818 Unrestricted 0.0 Metagenome 3300027972 *Microbiome Permanent Draft Freshwater sediment microbial communities from Cottonwood Lakes Research site near Jamestown, North Dakota, USA Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015 (SPAdes) (version 2) DOE Joint Genome Institute (JGI) 3300027972 Metagenome Analysis spades v. 3.11.1 Yes Yes mike.wilkins@colostate.edu Michael Wilkins No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 47.0956 -99.1001 635416435 1477228 564 14 1085 21 SRX2753785 Unrestricted 0.0 Metagenome 3300014225 *Microbiome Permanent Draft Indoor hospital air microbial communities from San Diego, USA Indoor hospital air microbial communities from San Diego, USA - 264_D2_2014-9-19 San Diego State University 3300014225 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Environmental Air Unclassified Indoor Air Unclassified Indoor hospital air 355874 900 8 5 8 15 0.0 Metagenome 3300028989 *Microbiome Permanent Draft Human host-associated microbial communities from fecal samples of mother and infant in Denmark Human fecal microbial communities from infant at 4 months in Denmark - 274_4M Beijing Genomics Institute (BGI) 3300028989 Metagenome Analysis released Yes Yes Yes 25974306 Host-associated Mammals: Human Large intestine Digestive system Fecal Human host-associated 55.678 12.531 45277095 46353 31 0 35 0 ERX491056 0.0 Metagenome 3300009179 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1 DOE Joint Genome Institute (JGI) 3300009179 Metagenome Analysis MEGAHIT v. 1.0.3 Yes Yes kwrighton@gmail.com Kelly Wrighton Yes 29146959 Environmental Aquatic Wetlands Freshwater Sediment Wetland 41.224 -82.304 2548561682 5535356 2162 59 3840 90 SRX2761412 Unrestricted 0.0 Metagenome 3300012268 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 3 #765 DOE Joint Genome Institute (JGI) 3300012268 Metagenome Analysis MEGAHIT v. 1.0.6 Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 29925429 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake -68.5558 78.1913 171063290 318870 196 27 315 30 SRX3241970 Unrestricted 0.0 Metagenome 3300013653 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P01130 Weill Cornell Medical College 3300013653 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Wooden surface city subway wood 40.71 -73.95 9820349 18275 15 0 20 0 SRX823085 0.0 Metagenome 3300001328 *Microbiome Permanent Draft Permafrost and active layer microbial communities from McGill Arctic Research Station (MARS) Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-65cm)- 6 month illumina University of Tennessee 3300001328 Metagenome Analysis released per JGI data release policy No Yes tullis@princeton.edu, tullis@princeton.edu.deleted Tullis Onstott No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 79.26 -90.46 31743305 149744 94 2 133 3 0.0 Metagenome 3300045250 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_1_E DOE Joint Genome Institute (JGI) 3300045250 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 164895915 186272 102 2 101 2 Unrestricted 121.27 Metagenome 3300031696 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from Ellis Fjord, Antarctic Ocean - #262 DOE Joint Genome Institute (JGI) 3300031696 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5958 78.1913 637704446 1330160 280 26 460 33 SRX5650041 Unrestricted 23.23 Metagenome 3300000763 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Trout Bog Lake, WI - 18AUG2009 hypolimnion DOE Joint Genome Institute (JGI) 3300000763 Metagenome Analysis No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.041 -89.686 0 0 0 0 0 0 0.0 Metagenome 3300014673 *Microbiome Permanent Draft Urban prokaryotic and eukaryotic communities from the subway and surrounding areas in New York, USA Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P01410 Weill Cornell Medical College 3300014673 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes Yes 26594662 Engineered Built environment Subway City Metal surface city subway metal 40.85 -73.89 34743237 53107 17 2 18 2 SRX823350 0.0 Metagenome 3300012215 *Microbiome Permanent Draft Human skin bacterial and viral communities - University of Pennsylvania Human skin bacterial and viral communities - University of Pennsylvania - MG100107 University of Pennsylvania 3300012215 Metagenome Analysis Custom JGI assembly, Nielsen et. al. released per Natalia: IMGSUPP-1553 Yes Yes No Host-associated Mammals: Human Skin Integumentary system Unclassified Human skin 4637196 12215 6 0 8 0 SRX756723 0.0 Metagenome 3300042001 *Microbiome Permanent Draft Sorghum-associated microbial communities from plants grown in Nebraska, USA Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z081617_5542 DOE Joint Genome Institute (JGI) 3300042001 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes daniel.schachtman@unl.edu Daniel Schachtman No Host-associated Plants Rhizosphere Roots Unclassified Rhizosphere 41.201 -97.9447 397576107 1076596 495 37 929 61 SRX14827238 Unrestricted 6.26 Metagenome 3300069246 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico Terrestrial soil microbial communities from Chase Lake Wetlands, North Dakota, USA - WOOD_024-M-20210714-comp-1 re-annotation DOE Joint Genome Institute (JGI) 3300069246 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Wetlands Soil Unclassified Terrestrial soil 47.151171 -99.262648 1273225867 3259285 1298 9 2465 16 0.0 Metagenome 3300000051 *Microbiome Permanent Draft Porifera Cymbastela concentrica microbial communities from Botany Bay near Bare Island, Sydney, Australia Porifera Cymbastela concentrica microbial communities from Botany Bay, Australia - sample 15 University of New South Wales 3300000051 Metagenome Analysis released per JGI data release policy No Yes t.thomas@unsw.edu.au Torsten Thomas Yes 20520651 Host-associated Porifera Unclassified Unclassified Unclassified Porifera Cymbastela concentrica -33.990833 151.23195 8.05 74839248 109438 67 16 98 8 0.0 Metagenome 7000000597 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763961826 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000597 Metagenome Analysis No Yes ipagani@lbl.gov; nmikhailova@lbl.gov; nckyrpides@lbl.gov Ionna Pagani; Natalia Mikhailova; Nikos Kyrpides No Host-associated Mammals: Human Oral cavity Digestive system Buccal mucosa Human 39.0042816 -77.1012173 10267484 33256 0 0 0 0 0.0 Metagenome 2004247008 *Microbiome Permanent Draft Hypersaline mat microbial communities from Guerrero Negro, Baja California Sur, Mexico Hypersaline mat microbial communities from Guerrero Negro, Mexico - 22-34 mm depth into microbial mat DOE Joint Genome Institute (JGI) 2004247008 Metagenome Analysis No Yes nrpace@colorado.edu Pace, Norman Yes 18523433 Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Microbial mats Hypersaline mat 27.68908 -113.917 6-9 8382678 13798 1 0 1 0 0.0 Metagenome 3300031143 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Marine microbial communities from water near the shore, Antarctic Ocean - #422 DOE Joint Genome Institute (JGI) 3300031143 Metagenome Analysis spades v. 3.12.0 Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Unclassified Marine Unclassified marine -68.5596 77.8957 575179057 1233317 288 7 453 9 SRX5650221 Unrestricted 24.27 Metagenome 3300069590 *Microbiome Permanent Draft Terrestrial soil microbial communities from various locations - NEON Terrestrial soil microbial communities from Barrow Environmental Observatory, Tundra, AK, USA - BARR_051-O-20170808-COMP-DNA1 re-annotation Battelle Memorial Institute 3300069590 Metagenome Analysis metaSPAdes v. 3.15.1 Yes Yes lstanish@gmail.com Lee Stanish No Environmental Terrestrial Unclassified Soil Unclassified Terrestrial soil 71.28241 -156.61936 48425744 137873 110 6 211 8 0.0 Metagenome 3300028899 *Microbiome Permanent Draft Axial Seamount Reassemblies Marine deep subsurface microbial communities from hydrothermal vents in Axial Seamount, Pacific Ocean - FS896_ElGuapo_DNA IDBA_UD reassembly The Marine Biological Laboratory 3300028899 Metagenome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Marine deep subsurface 45.926575 -129.979479 525803588 1194562 920 52 1411 117 0.0 Metagenome 3300020535 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - 25JUL2011 deep hole epilimnion (SPAdes) DOE Joint Genome Institute (JGI) 3300020535 Metagenome Analysis spades v. 3.11.1 Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 43.098333 -89.405278 119624931 250290 100 18 153 33 SRX1989652 Unrestricted 0.0 Metagenome 3300041926 *Microbiome Permanent Draft Peat soil microbial communities from Marcell Experimental Forest, MN, USA Peat soil microbial communities from Marcell Experimental Forest, MN, USA - P8_D2 (version 2) DOE Joint Genome Institute (JGI) 3300041926 Metagenome Analysis metaspades v. 3.14.1 released based on JGI ITS Yes Yes schadtcw@ornl.gov Christopher W. Schadt No Environmental Terrestrial Wetlands Soil Peat peat soil 47.5056 -93.4534 1069995431 1612558 270 24 431 24 SRX10166905 Unrestricted 0.0 Metagenome 3300036782 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Soil fungal communities from native Eucalyptus forests in New South Wales, Australia - Eu_11 DOE Joint Genome Institute (JGI) 3300036782 Metagenome Analysis metaspades v. 3.13.0 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Tropical forest Soil Bulk soil soil -34.5 150.0 1229255723 2026887 329 101 553 153 SRX8383908 Unrestricted 32.85 Metagenome 3300006308 *Microbiome Permanent Draft Marine microbial communities from the North Pacific Subtropical Gyre, ALOHA station Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0500m University of Hawaii 3300006308 Metagenome Analysis MIRA Version 4.9.3 released per Natalia: IMGSUPP-1553 Yes Yes edelong@hawaii.edu Edward DeLong No Environmental Aquatic Oceanic Marine Aphotic zone Marine 22.75 -158.0 676609997 1481994 871 29 1298 49 0.0 Metagenome 7000000078 *Microbiome Permanent Draft Human microbial communities from the National Institute of Health, USA, HMP production phase Human posterior fornix microbial communities from NIH, USA - visit 2, subject 159227541 Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis 7000000078 Metagenome Analysis No Yes ipagani@lbl.gov; NNIvanova@lbl.gov Ionna Pagani; Natalia Ivanova No Host-associated Mammals: Human Vagina Reproductive system Posterior fornix, posterior fornix Human 39.0042816 -77.1012173 1328521 1475 0 0 0 0 0.0 Metagenome 3300002695 *Microbiome Permanent Draft Hydrocarbon resource environments microbial communities from Canada and USA Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Biofilm from sections of failed pipe of Encana Pipeline McGill University 3300002695 Metagenome Analysis Released because the data are published No Yes scaffrey@genomealberta.ca Sean M Caffrey, Sean Caffrey Yes 23889694 Engineered Wastewater Petrochemical Industrial wastewater Unclassified Hydrocarbon resource environments 55.07 -110.53 18136085 25767 9 0 24 0 0.0 Metagenome 3300033798 *Microbiome Permanent Draft Peatland microbial communities from Stordalen Mire, Sweden Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-3-S DOE Joint Genome Institute (JGI) 3300033798 Metagenome Analysis spades v. 3.13.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat soil 68.3533 19.0467 259995223 614285 246 4 440 8 SRX8138018, SRX8138017 Unrestricted 0.0 Metagenome 3300020148 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Enriched microbial communities from leaf-cutter ant dump, University of Wisconsin, Madison, United States - 1B5A DOE Joint Genome Institute (JGI) 3300020148 Metagenome Analysis spades v. 3.10.1 Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0758 -89.4125 99929319 154116 80 4 106 6 SRX3988357 Unrestricted 22.94 Metagenome 3300007134 *Microbiome Finished Seawater and marine sponges microbial communities from Papua New Guinea CO2 seeps "Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Upa-Upasina ""control"", co6ic19" University of New South Wales 3300007134 Metagenome Analysis IDBA-UD released per JGI data release policy Yes Yes n.webster@aims.gov.au, e.botte@aims.gov.au; n.webster@aims.gov.au Nicole Webster, Emmanuelle BOTTE; Nicole Webster No Host-associated Porifera Unclassified Unclassified Unclassified C. singaporensis (marine sponge) -9.828217 150.820517 133445315 274722 75 1 126 1 0.0 Metagenome 3300037877 *Microbiome Permanent Draft Biogeographic diversity and light adaptation of endolithic cyanobacteria from deserts around the world Gypsum microbial communities from Atacama Desert, Antofagasta Region, Chile - G-MTQ-3P2 DOE Joint Genome Institute (JGI) 3300037877 Metagenome - Co-Culture metaspades v. 3.13.0 Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Gypsum -23.897 -68.1449 9946546 12947 3 0 6 0 SRX9166335 Unrestricted 1716.6 Metagenome 3300039418 *Microbiome Permanent Draft Biogeographic diversity and light adaptation of endolithic cyanobacteria from deserts around the world Ignimbrite microbial communities from Atacama Desert, Antofagasta Region, Chile - I-MTQ-3P1 DOE Joint Genome Institute (JGI) 3300039418 Metagenome - Co-Culture metaspades v. 3.13.0 released based on JGI ITS Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Ignimbrite -23.897 -68.1449 28161199 38986 16 1 18 1 SRX9601816 Unrestricted 472.56 Metagenome 3300028431 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego Desert, Southern California, United States - Methylocaldum S3-V5B DOE Joint Genome Institute (JGI) 3300028431 Metagenome - Co-Culture spades v. 3.11.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.305 -116.2548 11164092 10825 2 0 2 0 SRX5250491 Unrestricted 441.43 Metagenome 3300038622 *Microbiome Permanent Draft Biogeographic diversity and light adaptation of endolithic cyanobacteria from deserts around the world Gypsum microbial communities from Atacama Desert, Antofagasta Region, Chile - G-MTQ-3P1 DOE Joint Genome Institute (JGI) 3300038622 Metagenome - Co-Culture metaspades v. 3.13.0 Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Gypsum -23.897 -68.1449 16158975 21306 5 0 4 0 SRX9166332 Unrestricted 537.33 Metagenome 3300028432 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego Desert, Southern California, United States - Methanotrophic co-culture R1-M DOE Joint Genome Institute (JGI) 3300028432 Metagenome - Co-Culture spades v. 3.11.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.305 -116.2548 20113808 36398 12 0 22 0 SRX5250474 Unrestricted 212.22 Metagenome 3300028441 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego Desert, Southern California, United States - Bradyrhizobium sp. S3-V5C DOE Joint Genome Institute (JGI) 3300028441 Metagenome - Co-Culture spades v. 3.11.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.305 -116.2548 21570657 25729 10 0 6 0 SRX5250035 Unrestricted 196.78 Metagenome 3300028447 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego Desert, Southern California, United States - Methanotrophic co-culture R3-M DOE Joint Genome Institute (JGI) 3300028447 Metagenome - Co-Culture spades v. 3.11.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.305 -116.2548 49281859 65591 15 0 24 0 SRX5250032 Unrestricted 75.81 Metagenome 3300028331 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego Desert, Southern California, United States - Methylocaldum Y-M2 DOE Joint Genome Institute (JGI) 3300028331 Metagenome - Co-Culture spades v. 3.11.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.305 -116.2548 9299462 8577 2 0 2 0 SRX5250489 Unrestricted 475.45 Metagenome 3300039405 *Microbiome Permanent Draft Biogeographic diversity and light adaptation of endolithic cyanobacteria from deserts around the world Gypsum microbial communities from Salar Grande, Tarapac Region, Chile - G-Km37-3P1 DOE Joint Genome Institute (JGI) 3300039405 Metagenome - Co-Culture metaspades v. 3.13.0 released based on JGI ITS Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Gypsum -20.7274 -69.9732 18193552 18588 10 0 10 0 SRX9601806 Unrestricted 478.66 Metagenome 3300039404 *Microbiome Permanent Draft Biogeographic diversity and light adaptation of endolithic cyanobacteria from deserts around the world Calcite microbial communities from Atacama Desert, Antofagasta Region, Chile - C-VL-3P3 DOE Joint Genome Institute (JGI) 3300039404 Metagenome - Co-Culture metaspades v. 3.13.0 released based on JGI ITS Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Calcite -22.9164 -68.2493 11033587 11320 6 0 10 0 SRX9601807 Unrestricted 964.33 Metagenome 3300029651 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego Desert, Southern California, United States - Methanotrophic co-culture R2-M DOE Joint Genome Institute (JGI) 3300029651 Metagenome - Co-Culture spades v. 3.11.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.0544457 -116.3577702 22386889 34546 14 0 26 1 SRX5645824 Unrestricted 447.42 Metagenome 3300028444 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from San-Diego area, Southern California, United States - Methylocaldum sp. NOR-M DOE Joint Genome Institute (JGI) 3300028444 Metagenome - Co-Culture spades v. 3.11.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.1992 -117.2697 33426818 43908 14 0 17 0 SRX5250033 Unrestricted 124.87 Metagenome 3300039424 *Microbiome Permanent Draft Biogeographic diversity and light adaptation of endolithic cyanobacteria from deserts around the world Ignimbrite microbial communities from Atacama Desert, Antofagasta Region, Chile - I-MTQ-3P3 DOE Joint Genome Institute (JGI) 3300039424 Metagenome - Co-Culture metaspades v. 3.13.0 released based on JGI ITS Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Ignimbrite -23.897 -68.1449 30592279 33445 20 1 18 2 SRX9601815 Unrestricted 338.81 Metagenome 3300039425 *Microbiome Permanent Draft Biogeographic diversity and light adaptation of endolithic cyanobacteria from deserts around the world Ignimbrite microbial communities from Atacama Desert, Antofagasta Region, Chile - I-MTQ-4P3 DOE Joint Genome Institute (JGI) 3300039425 Metagenome - Co-Culture metaspades v. 3.13.0 released based on JGI ITS Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Ignimbrite -23.897 -68.1449 10358330 10489 12 0 12 0 SRX9601810 Unrestricted 1218.71 Metagenome 3300039401 *Microbiome Permanent Draft Biogeographic diversity and light adaptation of endolithic cyanobacteria from deserts around the world Sandstone microbial communities from Timna Park, South District, Israel - S-NGV-2P1 DOE Joint Genome Institute (JGI) 3300039401 Metagenome - Co-Culture metaspades v. 3.13.0 released based on JGI ITS Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Sandstone 29.7903 34.9671 43046009 48566 7 1 10 2 SRX9601817 Unrestricted 210.92 Metagenome 3300039033 *Microbiome Permanent Draft Biogeographic diversity and light adaptation of endolithic cyanobacteria from deserts around the world Sandstone microbial communities from Timna Park, South District, Israel - S-NGV-3P2 DOE Joint Genome Institute (JGI) 3300039033 Metagenome - Co-Culture metaspades v. 3.13.0 Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Sandstone 29.7903 34.9671 6808673 6973 3 0 3 0 SRX9166333 Unrestricted 1562.59 Metagenome 3300039032 *Microbiome Permanent Draft Biogeographic diversity and light adaptation of endolithic cyanobacteria from deserts around the world Sandstone microbial communities from Timna Park, South District, Israel - S-NGV-2P2 DOE Joint Genome Institute (JGI) 3300039032 Metagenome - Co-Culture metaspades v. 3.13.0 Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Sandstone 29.7903 34.9671 6805518 6966 2 0 4 0 SRX9166334 Unrestricted 1362.99 Metagenome 3300028449 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from San-Diego area, Southern California, United States - Methylocaldum sp. RMAD-M DOE Joint Genome Institute (JGI) 3300028449 Metagenome - Co-Culture spades v. 3.11.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.1992 -117.2697 30829877 40081 9 0 13 0 SRX5250034 Unrestricted 154.97 Metagenome 3300028438 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego Desert, Southern California, United States - Methylocaldum Y-M1 DOE Joint Genome Institute (JGI) 3300028438 Metagenome - Co-Culture spades v. 3.11.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.305 -116.2548 13278789 12702 2 0 2 0 SRX5250488 Unrestricted 368.14 Metagenome 3300039034 *Microbiome Permanent Draft Biogeographic diversity and light adaptation of endolithic cyanobacteria from deserts around the world Halite microbial communities from Salar Grande, Tarapac Region, Chile - H-SG-1P1 DOE Joint Genome Institute (JGI) 3300039034 Metagenome - Co-Culture metaspades v. 3.13.0 Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Halite -20.9522 -70.0158 38843797 44137 3 1 6 1 SRX9166329 Unrestricted 241.0 Metagenome 3300039035 *Microbiome Permanent Draft Biogeographic diversity and light adaptation of endolithic cyanobacteria from deserts around the world Halite microbial communities from Salar Grande, Tarapac Region, Chile - H-SG-2P1 DOE Joint Genome Institute (JGI) 3300039035 Metagenome - Co-Culture metaspades v. 3.13.0 Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Halite -20.9522 -70.0158 43085964 46737 9 1 10 2 SRX9166336 Unrestricted 410.27 Metagenome 3300005448 *Microbiome Permanent Draft Marine cyanobacterial communities from the University of California, Santa Cruz, USA, analyzing cyanobacterial DNA methylation Marine cyanobacteria communities from the University of California, Santa Cruz, USA, analyzing cyanobacterial DNA methylation - Crocosphaera watsoni WH8501 Co-Culture DOE Joint Genome Institute (JGI) 3300005448 Metagenome - Co-Culture HGAP3 v. smrtanalysis_2.3.0.140936 Yes Yes zehrj@ucsc.edu Jonathan Zehr No Host-associated Microbial Unclassified Bacteria Unclassified Marine cyanobacteria 36.9995 -122.0576 8753237 10277 3 0 3 0 SRX2718226, SRX2718225, SRX2718228, SRX2718227, SRX2718229, SRX2718230, SRX2718224, SRX2718223 Unrestricted 0.0 Metagenome 3300028440 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego Desert, Southern California, United States - Methanotrophic co-culture R2.2-M DOE Joint Genome Institute (JGI) 3300028440 Metagenome - Co-Culture spades v. 3.11.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.305 -116.2548 8932111 8534 2 0 2 0 SRX5250475 Unrestricted 455.74 Metagenome 3300005449 *Microbiome Permanent Draft Marine cyanobacterial communities from the University of California, Santa Cruz, USA, analyzing cyanobacterial DNA methylation Marine cyanobacteria communities from the University of California, Santa Cruz, USA, analyzing cyanobacterial DNA methylation - Crocosphaera watsoni WH8502 Co-Culture DOE Joint Genome Institute (JGI) 3300005449 Metagenome - Co-Culture HGAP3 v. smrtanalysis_2.3.0.140936 Yes Yes zehrj@ucsc.edu Jonathan Zehr No Host-associated Microbial Unclassified Bacteria Unclassified Marine cyanobacteria 36.9995 -122.0576 14410605 16948 8 0 9 0 SRX2718237, SRX2718236, SRX2718238, SRX2718231, SRX2718233, SRX2718232, SRX2718235, SRX2718234 Unrestricted 0.0 Metagenome 3300039416 *Microbiome Permanent Draft Biogeographic diversity and light adaptation of endolithic cyanobacteria from deserts around the world Gypsum microbial communities from Salar Grande, Tarapac Region, Chile - G-Km37-3P3 DOE Joint Genome Institute (JGI) 3300039416 Metagenome - Co-Culture metaspades v. 3.13.0 released based on JGI ITS Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Gypsum -20.7274 -69.9732 42924307 49326 7 1 10 2 SRX9601808 Unrestricted 229.89 Metagenome 3300026618 *Microbiome Permanent Draft Expanding fungal reference genomes with early diverging lineages (EDL) of fungi Mixed culture fungal communities from London, United Kingdom - Umbelopsis sp. nov. AD052 Piptocephalis tieghemiana RSA 1565 Co-culture DOE Joint Genome Institute (JGI) 3300026618 Metagenome - Co-Culture spades v. 3.11.1 Yes Yes spatafoj@science.oregonstate.edu Joseph Spatafora No Engineered Lab culture Fungi Culture media Unclassified defined medium 51.5074 0.1278 45664874 64891 8 11 30 37 SRX4550064 Unrestricted 822.58 Metagenome 3300028437 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego Desert, Southern California, United States - Methylocaldum S3-V5D DOE Joint Genome Institute (JGI) 3300028437 Metagenome - Co-Culture spades v. 3.11.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.305 -116.2548 5362324 5016 1 0 1 0 SRX5250490 Unrestricted 812.7 Metagenome 3300039417 *Microbiome Permanent Draft Biogeographic diversity and light adaptation of endolithic cyanobacteria from deserts around the world Ignimbrite microbial communities from Atacama Desert, Antofagasta Region, Chile - I-MTQ-2P3 DOE Joint Genome Institute (JGI) 3300039417 Metagenome - Co-Culture metaspades v. 3.13.0 released based on JGI ITS Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Ignimbrite -23.897 -68.1449 20035828 24153 15 0 9 0 SRX9601809 Unrestricted 587.06 Metagenome 3300031144 *Microbiome Permanent Draft Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing the most valuable type-strain genomes for metagenomic binning, comparative biology and taxonomic classification Contaminated culture microbial communities from Brunswick, Lower Saxony, Germany - Peredibacter starrii DSM 17039 Co-culture DOE Joint Genome Institute (JGI) 3300031144 Metagenome - Co-Culture spades v. 3.12.0 Yes Yes markus.goeker@dsmz.de Markus Goker No Engineered Lab culture Bacteria Culture media Contaminated defined medium 52.2691 10.5211 7122181 9437 5 0 6 0 SRX5356261 Unrestricted 2732.38 Metagenome 3300028439 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Soil microbial communities from Anza Borrego Desert, Southern California, United States - Methanotrophic co-culture BM DOE Joint Genome Institute (JGI) 3300028439 Metagenome - Co-Culture spades v. 3.11.1 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.305 -116.2548 13277389 12712 2 0 2 0 SRX5250158 Unrestricted 367.19 Metagenome 3300028826 *Microbiome Permanent Draft Membrane Aerated Biofilm Reactor Sulfur Study Combined Assembly of Gp0304198, Gp0304199 University of Michigan Medical School 3300028826 Combined Assembly MEGAHIT v. 1.1.2 released by JGI data releasing policy Yes Yes nglove@umich.edu Nancy Love No Engineered Bioreactor Unclassified Aerobic Unclassified Suspended Biomass 7.7 643439105 914654 265 22 432 33 0.0 Combined_assembly 3300030915 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Coassembly of Cow X Corn Stover DOE Joint Genome Institute (JGI) 3300030915 Combined Assembly megahit v. 0.2.0 No Yes mhess@lbl.gov, mhess@ucdavis.edu Hess, Matthias, Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 1045750448 2345293 207 2684 1292 5801 SRX5780594 Unrestricted 0.0 Combined_assembly 3300004481 *Microbiome Permanent Draft Urban pond sediment microbial communities from Copenhagen, Denmark Combined Assembly of Gp0112041, Gp0112042, Gp0112043 The National High-throughput DNA Sequencing Centre 3300004481 Combined Assembly Megahit version 0.20 released per JGI data release policy No Yes arrivers@lbl.gov, adam.rivers@usda.gov Adam Rivers No Environmental Aquatic Pond Freshwater Sediment sediment 2858748562 7445287 2065 168 4108 365 0.0 Combined_assembly 3300006887 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom Combined Assembly of Gp0125121, Gp0125656, Gp0125657 Shell Corporation 3300006887 Combined Assembly IDBA_UD released per JGI data release policy No Yes tianakorin@googlemail.com, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Tetyana Korin, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 85469608 158776 108 0 180 0 0.0 Combined_assembly 3300027981 *Microbiome Permanent Draft Permafrost microbial communities from glacier foreland in Svalbard, Norway Permafrost microbial communities from glacier foreland in Svalbard, Norway. Combined Assembly of Gp0305103, Gp0305104 KOREA POLAR RESEARCH INSTITUTE 3300027981 Combined Assembly Megahit v. 1.1.3 released by JGI data releasing policy Yes Yes sarbjeet.niraula@mavs.uta.edu Sarbjeet Niraula No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 7.9 67531117 204985 234 42 684 64 0.0 Combined_assembly 3300035696 *Microbiome Permanent Draft Lab enriched peat soil microbial communities from two peatlands near Ithaca, NY, United States MB metagenomes combined assembly DOE Joint Genome Institute (JGI) 3300035696 Combined Assembly metaspades v. 3.13.0 Yes Yes rer26@cornell.edu Ruth Richardson No Environmental Terrestrial Wetlands Soil Peat peat soil 8051698227 12946332 2384 104 3561 149 SRX7543022 Unrestricted 0.0 Combined_assembly 3300027982 *Microbiome Permanent Draft Longitudinal study of halite endolithic microbial communities Halite endolithic microbial communities from Salar Grande, Atacama Desert, Chile. Combined Assembly of Full timeline Johns Hopkins University 3300027982 Combined Assembly metaSPAdes v. 3.11 Timeline paper main co-assembly annotation Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified Halite pinnacle 575194396 716955 83 8 88 7 0.0 Combined_assembly 3300028913 *Microbiome Permanent Draft Gypsum rock endolithic and hypoendolithic microbial communities Gypsum rock microbial communities from the Atacama Desert, Chile. Combined Assembly of 9 SPs Johns Hopkins Bayview Research CORES, Johns Hopkins School of Medicine 3300028913 Combined Assembly Megahit v. 1.1.2 released by Jocelyne DiRuggiero No Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock 320919009 415136 122 5 131 7 0.0 Combined_assembly 3300029951 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden III_Palsa_N1 coassembly DOE Joint Genome Institute (JGI) 3300029951 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 5283020085 9896003 1221 181 1811 282 SRX5357864 Unrestricted 0.0 Combined_assembly 3300029952 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden II_Bog_N3 coassembly DOE Joint Genome Institute (JGI) 3300029952 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 3230592672 5845247 1178 221 1667 330 SRX5355823 Unrestricted 0.0 Combined_assembly 3300010430 *Microbiome Permanent Draft Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samples DOE Joint Genome Institute (JGI) 3300010430 Combined Assembly MEGAHIT v. 1.0.3 Yes Yes jeremy.rich@maine.edu Jeremy Rich No Environmental Aquatic Coastal Marine Sediment Marine sediment 13437838219 25025850 7382 260 11445 428 SRX2837916 Unrestricted 0.0 Combined_assembly 3300004157 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2 DOE Joint Genome Institute (JGI) 3300004157 Combined Assembly MEGAHIT v. 0.2.0 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 7684597335 22993086 2876 67 6491 230 SRX1990512 Unrestricted 0.0 Combined_assembly 3300014828 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Mississippi River at Belle Chasse, LA, Summer, 14-Jul-2015, Metagenome, Replicates ABC, Gp0208244, Gp0208246, Gp0208248 University of Oregon 3300014828 Combined Assembly Metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 214708488 755287 269 19 519 31 0.0 Combined_assembly 3300009842 *Microbiome Permanent Draft Metagenomic analysis of heterotrophic bacteria associated with phytoplankton bloom in Amundsen sea polynya Bacterial communities in Amundsen Sea Polynya. Combined Assembly of Gp0149108, Gp0149160, Gp0151052 Macrogen Inc 3300009842 Combined Assembly IDBA_UD No Yes soj.kim86@gmail.com So-Jeong Kim No Environmental Aquatic Oceanic Marine Photic zone marine 36616378 29031 1 0 1 0 0.0 Combined_assembly 3300034198 *Microbiome Permanent Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Shield Ecozone, Canada. Combined Assembly of 25 SPs Genome Quebec 3300034198 Combined Assembly Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 4167520877 5705605 485 185 660 149 0.0 Combined_assembly 3300010365 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations AD_USDIca DOE Joint Genome Institute (JGI) 3300010365 Combined Assembly Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 1581748801 2934499 1064 3 1499 3 SRX2338987 Unrestricted 0.0 Combined_assembly 3300033750 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States P4 metagenomes combined assembly DOE Joint Genome Institute (JGI) 3300033750 Combined Assembly metaspades v. 3.13.0 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass growth medium 276887170 379082 253 1 294 0 SRX5660656 Unrestricted 0.0 Combined_assembly 3300061148 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Combined Assembly of surface microbial communities from International Space Station, Mission 1 samples, PMA-treated Jet Propulsion Laboratory, California Institute of Technology 3300061148 Combined Assembly Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 331592856 870951 35 40 91 76 SRX3808521, SRX3808533, SRX2249339, SRX2249336 0.0 Combined_assembly 3300005066 *Microbiome Permanent Draft Activated sludge wastewater microbial communities from Ann Arbor, Michigan, USA Combined Assembly of Gp0111537, Gp0111539, Gp0111540 University of Michigan 3300005066 Combined Assembly IDBA released per JGI data release policy No Yes nglove@umich.edu Nancy Love No Engineered Wastewater Unclassified Activated Sludge Unclassified Wastewater bioreactor 326587990 727363 198 0 313 0 0.0 Combined_assembly 3300038389 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Combined Assembly of Produced water samples from subsea petroleum storage tank, North Sea, United Kingdom Shell Corporation 3300038389 Combined Assembly Megahit v. 1.2.9 released by JGI data releasing policy No Yes nicolas.tsesmetzis@shell.com; avignero@gmail.com Nicolas Tsesmetzis; Adrien Vigneron No Environmental Aquatic Unclassified Unclassified Unclassified aquatic 259685486 393856 115 0 260 0 0.0 Combined_assembly 3300030943 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden III_Fen_N2 coassembly DOE Joint Genome Institute (JGI) 3300030943 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 3726234805 8281381 2418 218 3807 399 SRX5357455 Unrestricted 0.0 Combined_assembly 3300029908 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden II_Bog_E1 coassembly DOE Joint Genome Institute (JGI) 3300029908 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 1816801459 3419981 829 217 1187 303 SRX5799193 Unrestricted 0.0 Combined_assembly 3300010356 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations AD_USDEca DOE Joint Genome Institute (JGI) 3300010356 Combined Assembly released by Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 3554545278 7180035 1868 12 3214 18 SRX2157889 Unrestricted 0.0 Combined_assembly 3300042977 *Microbiome Draft Aquatic microalgae cultures microbial communities from IPM, Hamburg, Germany Combined Assembly of Microalgae culture of Nannochloropsis salina (Gp0542796, Gp0542797, Gp0542798) HPI Heinrich-Pette-Institut 3300042977 Combined Assembly metaSpades v. 3.1 released by JGI data releasing policy No Yes ines.krohn@uni-hamburg.de Ines KROHN No Host-associated Algae Unclassified Microalgae Unclassified Microalgae 179473949 200631 33 1 68 1 0.0 Combined_assembly 3300059473 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota, Crystal Bog Lake, and Trout Bog Lake in Wisconsin, United States - time-series metagenomes Lake Mendota MetaHipmer assembly DOE Joint Genome Institute (JGI) 3300059473 Combined Assembly MetaHipMer v. 2.1.0.1.256-g6a25b79-dirty-RevertAggrShuffleReads released based on JGI ITS Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone, Unclassified freshwater 105461415977 162984165 12487 5423 17428 8091 SRX7621628 Unrestricted 0.0 Combined_assembly 3300009126 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Combined Assembly of Gp0139357, Gp0139356 Georgia Genomics Facility 3300009126 Combined Assembly IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 744729675 1020489 355 11 474 17 0.0 Combined_assembly 3300015373 *Microbiome Permanent Draft Arabidopsis rhizosphere microbial communities from the University of North Carolina Combined assembly of cpr5 rhizosphere DOE Joint Genome Institute (JGI) 3300015373 Combined Assembly MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov; dangl@email.unc.edu Susannah Tringe; Jeff Dangl Yes 22859206 Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 7353065826 16521412 4685 289 8328 489 Unrestricted 0.0 Combined_assembly 3300029917 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden I_Bog_E1 coassembly DOE Joint Genome Institute (JGI) 3300029917 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 1237300988 2584528 553 77 760 140 SRX5799070, SRX5799069 Unrestricted 0.0 Combined_assembly 3300023205 *Microbiome Permanent Draft Metagenomes from anaerobic digester of solid waste Combined Assembly of Gp0242100, Gp0242119 University of Toronto 3300023205 Combined Assembly megahit v. 1.1.1 No Yes elizabeth.edwards@utoronto.ca; camillaln@gmail.com Elizabeth A. Edwards; Camilla Nesb? No Engineered Solid waste Unclassified Food waste Unclassified food waste 1946126755 3435484 625 259 913 359 SRX4986160, SRX4965141 0.0 Combined_assembly 3300024343 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction DOE Joint Genome Institute (JGI) 3300024343 Combined Assembly spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 1713667238 3588853 1347 441 2073 649 SRX2753607 Unrestricted 0.0 Combined_assembly 3300002072 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Barrow Graham LP Ref core NGADG0011-211 (Barrow Graham LP Ref core NGADG0011-211,NGADG0004-312, ASSEMBLY_DATE=20131005) DOE Joint Genome Institute (JGI) 3300002072 Combined Assembly Released by Nikos bc they passed the 6 months embargo date Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 458007057 1032774 346 1 583 5 SRX1990906 0.0 Combined_assembly 3300002071 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Barrow Graham LP Ref core NGADG0011-312 (Barrow Graham LP Ref core NGADG0011-312,NGADG0011-212, ASSEMBLY_DATE=20131010) DOE Joint Genome Institute (JGI) 3300002071 Combined Assembly Released by Nikos bc they passed the 6 months embargo date Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 675463508 1537138 516 5 909 11 SRX1990910 0.0 Combined_assembly 3300061151 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Combined Assembly of surface microbial communities from International Space Station, Mission 2 samples, PMA-treated Jet Propulsion Laboratory, California Institute of Technology 3300061151 Combined Assembly Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 268240422 734638 91 24 144 34 SRX2249351, SRX2249348, SRX3808517, SRX3808506 0.0 Combined_assembly 3300061152 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Combined Assembly of surface microbial communities from International Space Station, Mission 3 samples, untreated Jet Propulsion Laboratory, California Institute of Technology 3300061152 Combined Assembly Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 28247826 94294 12 3 27 11 SRX3244875, SRX3808509, SRX3244864, SRX3808529 0.0 Combined_assembly 3300040801 *Microbiome Finished Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Combined Assembly of Brackish water microbial mat communities from the Etang de Berre and Salins du Lion, France Genopole Toulouse Midi-Pyrenees 3300040801 Combined Assembly megahit v. 1.11 released by Adrien Vigneron No Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Marine lake Marine Unclassified marine 6728375366 9591826 2785 277 3983 366 0.0 Combined_assembly 3300029863 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from Prorhinotermes sp. nest from lab. colony in Brussels, Belgium. Combined Assembly of Gp0326319, Gp0326318 Luxembourg Institute of Science and Technology 3300029863 Combined Assembly CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 33033428 86545 0 0 5 13 0.0 Combined_assembly 3300032160 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Sb_50d combined assembly (MetaSPAdes) DOE Joint Genome Institute (JGI) 3300032160 Combined Assembly spades v. 3.11.1 Yes Yes loy@microbial-ecology.net; Michael.Pester@dsmz.de Alexander Loy; Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 6681749244 12202375 1270 28 1958 54 Unrestricted 0.0 Combined_assembly 3300039452 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Combined Assembly of Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil DOE Joint Genome Institute (JGI) 3300039452 Combined Assembly MEGAHIT v. 1.2.7 Released on PI's request No Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Host-associated Plants Rhizosphere Roots Unclassified rhizosphere 2011735349 2679283 536 56 776 67 SRX4020302 0.0 Combined_assembly 3300009374 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Combined Assembly of Gp0137041, Gp0137043 Georgia Genomics Facility 3300009374 Combined Assembly IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 598468881 734422 287 2 388 0 0.0 Combined_assembly 3300039394 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Doriopsilla Microbiome 2 Co-assembly DOE Joint Genome Institute (JGI) 3300039394 Combined Assembly spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 1543482 1606 1 0 1 0 Unrestricted 0.0 Combined_assembly 3300041004 *Microbiome Draft Rumen microbial communities from cattle in Karaj, Iran Rumen microbial communities attached to common reed (CR) from cattle in Karaj, Iran. Combined Assembly of Gp0454329, Gp0454330, Gp0454331, Gp0454331 Macrogen Inc 3300041004 Combined Assembly Spades v. 13.3 released by JGI data releasing policy No Yes jgharechahi@yahoo.com Javad Gharechahi No Host-associated Mammals Stomach Digestive system Rumen rumen 3077507443 4292423 1426 15 1713 33 0.0 Combined_assembly 3300001301 *Microbiome Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot Lake Oscillatoria-heterotroph coculture metagenome (Co-assembly of Osc and Ana co-culture metagenomes) DOE Joint Genome Institute (JGI) 3300001301 Combined Assembly Released by Nikos bc they passed the 6 months embargo date No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline mat enrichment 67258546 65842 7 0 6 0 0.0 Combined_assembly 3300010349 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations AD_HKTAca DOE Joint Genome Institute (JGI) 3300010349 Combined Assembly Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 2224753550 4485552 1156 14 2010 25 SRX2338797 Unrestricted 0.0 Combined_assembly 3300028401 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States ANME aggregate JGI 7061.QLV.BNCT.02.L10_combo DOE Joint Genome Institute (JGI) 3300028401 Combined Assembly metaspades v. 3.11.1 Yes Yes rrmalmstrom@lbl.gov; vorphan@gps.caltech.edu Rex Malmstrom; Victoria Orphan No Environmental Aquatic Marine basin floor Marine Sediment marine sediment 5348360 7406 5 0 3 0 Unrestricted 0.0 Combined_assembly 3300009389 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Combined Assembly of De NOVO T34 (BES) FTP Oil sands Benzoate Gp0125721, Gp0125670 Shell Corporation 3300009389 Combined Assembly IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 129087626 322407 150 0 375 5 0.0 Combined_assembly 3300033064 *Microbiome Permanent Draft Meromitic Lake A Freshwater microbial communities from meromitic lake A, Ellesmere Island, Canada. Combined Assembly of Gp0356493, Gp0356494, Gp0356495 Laval University 3300033064 Combined Assembly Megahit v. 1.0.5 released by Adrien Vigneron No Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 5439081205 10500414 1333 37 2891 105 0.0 Combined_assembly 3300006834 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom Combined Assembly of Gp0125094, Gp0125095, Gp0125096 Shell Corporation 3300006834 Combined Assembly IDBA_UD released per JGI data release policy No Yes tianakorin@googlemail.com, ianhead@ncl .ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Tetyana Korin, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 79450630 154822 86 0 144 0 0.0 Combined_assembly 3300012668 *Microbiome Permanent Draft Metagenomes of Arctic soils Arctic soils microbial communities. Combined Assembly of 23 SPs University of Bristol 3300012668 Combined Assembly SPades 3.10.0-dev released by JGI data releasing policy Yes Yes EAEloeFadrosh@lbl.gov; maisie.nash@bristol.ac.uk; ama@envs.au.dk Emiley Eloe-Fadrosh; Maisie Nash; Alexandre Magno Barbosa Anesio Yes 29901729 Environmental Terrestrial Glacier Soil Unclassified Glacier forefield soil 7.5 1534610778 4224142 902 75 1902 146 0.0 Combined_assembly 3300001213 *Microbiome Draft Wetland microbial communities from Twitchell Island in the Sacramento Delta Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly) DOE Joint Genome Institute (JGI) 3300001213 Combined Assembly Released by Nikos bc they passed the 6 months embargo date Yes Yes stringe@lbl.gov Susannah Tringe Yes 25991679 Environmental Aquatic Wetlands Marine Sediment Wetland 8020588982 15649277 125 26 576 62 Unrestricted 0.0 Combined_assembly 3300007198 *Microbiome Permanent Draft Cyanobacterial bloom in Marina Bay freashwater reservoir, Singapore (Monthly Sampling) Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Monthly Sampling-Site A) 9 sequencing projects The Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300007198 Combined Assembly CLC Genomics Workbench 8 released per JGI data release policy No Yes boonfei@ualberta.ca BOONFEI TAN No Environmental Aquatic Lake Freshwater Cyanobacterial bloom freshwater lake 392654142 543226 62 20 85 23 0.0 Combined_assembly 3300020811 *Microbiome Permanent Draft Metagenomic analysis of freshwater used for vegetable crops irrigation from Sao Paulo Zoo Park farm Freshwater bacterial communities from Sao Paulo Zoo Park farm stream, Sao Paulo, Brazil. Combined Assembly of Gp0238883, Gp0238882, Gp0238592 UNESP-FCAV 3300020811 Combined Assembly CLC Genomics Workbench released by JGI data releasing policy No Yes aylankm@gmail.com Aylan K. Meneghine No Environmental Aquatic Lotic Freshwater Unclassified Freshwater 293085126 614820 68 38 142 68 0.0 Combined_assembly 3300018069 *Microbiome Permanent Draft Himalayan ancient salt bed layer microbial communities Salt bed layer microbial communities from Himalayan mine, Nepal - White. Combined Assembly of Gp0216763, Gp0216764 Stanford University 3300018069 Combined Assembly SPAdes, metaSPAdes v10.0 and Megahit released by JGI data releasing policy No Yes berghuis@stanford.edu Bojk Berghuis No Environmental Terrestrial Mine Geologic Unclassified Hypersaline (warm) salt bed layers 72764359 79813 15 0 5 0 0.0 Combined_assembly 3300028924 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Mississippi river assembly metatranscriptomes University of Oregon 3300028924 Combined Assembly rnaspades v. 3.10.1 released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 159109759 615188 31 286 193 1864 0.0 Combined_assembly 3300021194 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Metatranscriptomes of riverine microbial communities from Altamaha River at Everett City, GA, USA. Combined Assembly of 12 SPs University of Oregon 3300021194 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 441926366 1564390 525 1796 1450 7010 0.0 Combined_assembly 3300010938 *Microbiome Permanent Draft Sediment core sample microbial community from Chocolate Pots hot springs, Yellowstone National Park, Wyoming, USA Sediment microbial community from Chocolate Pots hot springs, Yellowstone National Park, Wyoming, USA. Combined Assembly of Gp0156111, Gp0156114, Gp0156117 University of Wisconsin, Madison 3300010938 Combined Assembly metaSPAdes, v.3.9.0 released by Nathaniel Fortney Yes Yes eroden@wisc.edu Eric Roden No Environmental Aquatic Hot (42-90C) Thermal springs Neutral Hot spring Fe-Si sediment 5.94 1588025949 2747034 1226 15 1584 20 0.0 Combined_assembly 3300007871 *Microbiome Permanent Draft Marine sediment microbial communities from Aarhus Bay station M5, Denmark Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 75 cmbsf. Combined Assembly of MM2PM2 Aarhus University 3300007871 Combined Assembly IDBA_UD released per JGI data release policy No Yes starnas88@gmail.com Piotr Starnawski No Environmental Aquatic Coastal Marine Sediment Marine sediment 308191643 372593 128 2 172 2 0.0 Combined_assembly 3300037891 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Sub-Antarctic metatranscriptomes combined assembly DOE Joint Genome Institute (JGI) 3300037891 Combined Assembly MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified Seawater 3555481851 4826002 1518 147 3145 2307 SRX8220654 Unrestricted 0.0 Combined_assembly 3300010347 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations AD_JPHGca DOE Joint Genome Institute (JGI) 3300010347 Combined Assembly released by Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 2055599175 4007612 1148 8 1993 16 SRX2338788 Unrestricted 0.0 Combined_assembly 3300004091 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3 DOE Joint Genome Institute (JGI) 3300004091 Combined Assembly MEGAHIT v. 0.2.0 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 4749708547 14289136 1648 341 3222 923 SRX2575218 Unrestricted 0.0 Combined_assembly 3300022468 *Microbiome Permanent Draft Riverine microbial communities from Willamette River, Corvallis, OR, USA Lab enrichment of the riverine microbial communities from Willamette River, OR, USA. Combined Assembly of 45 SPs Oregon State University 3300022468 Combined Assembly metaspades v.3.11.0 released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified freshwater 2606489855 8655721 2303 242 4246 430 0.0 Combined_assembly 3300028845 *Microbiome Permanent Draft Membrane Aerated Biofilm Reactor Sulfur Study Combined Assembly of Gp0304183, Gp0304184 University of Michigan Medical School 3300028845 Combined Assembly Megahit v. 1.1.2 released by JGI data releasing policy Yes Yes jesethdv@umich.edu; nglove@umich.edu Jeseth Delgado Vela; Nancy Love No Engineered Bioreactor Unclassified Aerobic Unclassified sloughed biomass 7.7 969626429 1494903 482 23 728 27 0.0 Combined_assembly 3300004092 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3 DOE Joint Genome Institute (JGI) 3300004092 Combined Assembly MEGAHIT v. 0.2.0 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 12170310832 35152872 3284 691 5786 1969 SRX2575203 Unrestricted 0.0 Combined_assembly 3300006213 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Combined Assembly of all intestinal microbial_metagenomes from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA University of Texas Southwestern Medical Center 3300006213 Combined Assembly SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 1020957121 1379870 645 1 625 0 0.0 Combined_assembly 3300022545 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) SSW_combined assebmly DOE Joint Genome Institute (JGI) 3300022545 Combined Assembly Yes Yes brian.hedlund@unlv.edu; rstepanauskas@bigelow.org Brian Hedlund; Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring 7.03 252490709 476600 181 1 237 0 SRX2753869 Unrestricted 0.0 Combined_assembly 3300027103 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication APAL control metatranscriptome co-assembly DOE Joint Genome Institute (JGI) 3300027103 Combined Assembly MEGAHIT v. 1.1.2 Yes Yes momedinamunoz@gmail.com Medina Medina No Host-associated Invertebrates Coral Cnidaria Unclassified coral 280146116 373017 5 14 101 188 SRX3998424 Unrestricted 0.0 Combined_assembly 3300029989 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden III_Fen_N1 coassembly DOE Joint Genome Institute (JGI) 3300029989 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 3772674424 8585477 2120 178 3473 291 SRX5357447 Unrestricted 0.0 Combined_assembly 3300009942 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities - laboratory nest. Combined Assembly of 9 SPs University of Luxembourg 3300009942 Combined Assembly CLC Genomics Workbench 9.0 released per JGI data release policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 178119209 577238 3 16 38 43 0.0 Combined_assembly 3300017790 *Microbiome Permanent Draft Sorghum rhizosphere soil microbial communities from California, USA Sorghum microbial community from Fresno, CA, USA. Combined Assembly of 16 sequencing projects QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300017790 Combined Assembly megahit released per PI No Yes xuling@berkeley.edu Ling Xu Yes 29666229 Mixed, Environmental Terrestrial Unclassified Soil Agricultural land Soil 611403839 1315094 1034 2122 5640 6513 0.0 Combined_assembly 3300033571 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Mixedwood Plains Ecozone, Canada. Combined Assembly of Gp0356550, Gp0356551, Gp0356552 Genome Quebec 3300033571 Combined Assembly Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 4281819632 5790585 498 159 566 137 0.0 Combined_assembly 3300009376 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Combined Assembly of Gp0137079, Gp0137080 Georgia Genomics Facility 3300009376 Combined Assembly IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 934248378 1247923 500 13 653 17 0.0 Combined_assembly 3300041006 *Microbiome Draft Rumen microbial communities from cattle in Karaj, Iran Rumen microbial communities attached to Alhagi persarum (AP) from cattle in Karaj, Iran. Combined Assembly of Gp0453453, Gp0454326, Gp0454327, Gp0454328 Macrogen Inc 3300041006 Combined Assembly Spades v. 13.3 released by JGI data releasing policy No Yes jgharechahi@yahoo.com Javad Gharechahi No Host-associated Mammals Stomach Digestive system Rumen rumen 3728555222 5187468 1787 27 2040 40 0.0 Combined_assembly 3300038405 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Combined Assembly of Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil DOE Joint Genome Institute (JGI) 3300038405 Combined Assembly MEGAHIT v. 1.2.7 Released on PI's request No Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Environmental Terrestrial Grasslands Soil Bulk soil bulk soil 2304499414 3137906 576 47 904 81 SRX4020416 0.0 Combined_assembly 3300028219 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Combined Assembly of Gp0060441, Gp0060376 - Site 229 with 0.1UM filter - spades J. Craig Venter Institute, J. Craig Venter Institute (JCVI) 3300028219 Combined Assembly Spades v. 3.11.1 Released per Simon Roux. Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater 7.81 23317396 54899 26 0 38 0 0.0 Combined_assembly 3300000527 *Microbiome Draft Feedstock adapted compost microbial communities from Newby Island compost facility, Milpitas CA Feedstock adapted compost microbial communities from Newby Island compost facility, sample Newbly Island Compost Facility, Passage 4_SG (Newby Island Coassembly IISI IISO IISN IISP IISS, Oct 2012 Assem) DOE Joint Genome Institute (JGI) 3300000527 Combined Assembly released per Simon -- IMGSUPP2953 Yes Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer No Engineered Solid waste Composting Feedstock Unclassified Feedstock adapted compost 334831998 562149 303 7 416 12 0.0 Combined_assembly 3300008055 *Microbiome Permanent Draft Microbial communities of marine eelgrass Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393 Oregon State University 3300008055 Combined Assembly Megahit v. 1.0.1 released per JGI data release policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Host-associated Plants Leaf Phyllosphere Unclassified estuary 1047221787 2383475 970 303 1752 760 0.0 Combined_assembly 3300051405 *Microbiome Permanent Draft Fecal bacterial communities from pre-IBD and healthy mice, UC Davis, CA, USA Combined Assembly of Fecal bacterial communities from pre-IBD and healthy mice, UC Davis, CA, USA University of California, Davis 3300051405 Combined Assembly SPAdes v. 3.15.2 Released per request -- IMGSUPP-4336 Yes Yes crtiffany@ucdavis.edu Connor Tiffany No Host-associated Mammals Large intestine Digestive system Fecal Mouse feces 3191025472 3197020 475 25 565 85 0.0 Combined_assembly 3300028926 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Altamaha River assembly metatranscriptomes University of Oregon 3300028926 Combined Assembly rnaspades v. 3.10.1 released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 441965679 1609684 55 413 254 3168 0.0 Combined_assembly 3300021196 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Metatranscriptome of riverine microbial communities from Columbia River near Beaver Army Terminal, OR, USA.Combined Assembly of 12 SPs University of Oregon 3300021196 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton Freshwater 1063897738 3631739 2366 2562 5038 7881 0.0 Combined_assembly 3300020567 *Microbiome Permanent Draft Microbial communities in geothermal temperature gradients from the Taupo Volcanic Zone, New Zealand Hot spring sediment microbial communities from Fred and Maggie's Pool, Orakei Korako, New Zealand. Combined Assembly of 6 SPs University of Otago 3300020567 Combined Assembly MEGAHIT v1.1.1-2-g02102e1 released by JGI data releasing policy No Yes Kevin.Lee@aut.ac.nz Kevin C Lee No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Geothermal sediment 846473603 1520442 472 10 747 18 0.0 Combined_assembly 3300018623 *Microbiome Permanent Draft Black Band Disease transitions Microbial communities of stony corals with Black-band disease (BBD) from Carrie Bow Cay Field Station, Belize; BBD Transitions coral #4. Combined Assembly of Gp0151272, Gp0151273, Gp0151274 University of Maryland 3300018623 Combined Assembly IDBA-Tran v1.1.1 released by JGI data releasing policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified marine 92238317 175942 56 13 199 46 0.0 Combined_assembly 3300022550 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Zodletone_combined assembly DOE Joint Genome Institute (JGI) 3300022550 Combined Assembly Yes Yes rstepanauskas@bigelow.org; mostafa@okstate.edu Ramunas Stepanauskas; Mostafa Elshahed No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 7.5 684050652 1738932 655 2 1201 6 SRX2525190 Unrestricted 0.0 Combined_assembly 3300014835 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Yukon River at Pilot Station, AK, Spring, 21-May-2015, Metagenome, Replicate ABC, Gp0208190, Gp0208192, Gp0208193 University of Oregon 3300014835 Combined Assembly Metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Drinking water Freshwater Unclassified freshwater 465819435 1427018 368 7 692 14 0.0 Combined_assembly 3300001987 *Microbiome Permanent Draft Hot spring microbial communities from Yellowstone National Park Yellowstone National Park Obsidian Pool site 2 B6 (Yellowstone National Park Obsidian Pool Combined site 2 B6,site 1 Avi, ASSEMBLY_DATE=20131030) DOE Joint Genome Institute (JGI) 3300001987 Combined Assembly Released by Nikos bc they passed the 6 months embargo date Yes Yes rmkelly@ncsu.edu Robert Kelly No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring 12920070 14782 13 0 15 0 SRX2554348, SRX2554349, SRX2554347, SRX2554354, SRX2554350 0.0 Combined_assembly 3300029987 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden I_Fen_E3 coassembly DOE Joint Genome Institute (JGI) 3300029987 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 4013543180 9817852 2828 286 4801 452 SRX5281181 Unrestricted 0.0 Combined_assembly 3300015244 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of St. Lawrence River at Cornwall, Ontario, near Massena, NY, Winter, 12-Feb-2016, Metagenome, Replicates ABC, Gp0208214, Gp0208215, Gp0208216 University of Oregon 3300015244 Combined Assembly Metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 816767539 2139323 260 19 427 42 0.0 Combined_assembly 3300002169 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA floor swab of Spacecraft Assembly Facility - replicate A (Combined floor swab M2426|M2425|M2424|M2423|M2428|M2427, ASSEMBLY_DATE=20140108) DOE Joint Genome Institute (JGI) 3300002169 Combined Assembly Released by Nikos bc they passed the 6 months embargo date Yes Yes nnivanova@lbl.gov, NNIvanova@lbl.gov Natasha Ivanova, Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 27685365 67962 31 8 47 1 0.0 Combined_assembly 3300009128 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Combined Assembly of Gp0137084, Gp0137083 Georgia Genomics Facility 3300009128 Combined Assembly IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 1278751441 1387207 365 7 480 10 0.0 Combined_assembly 3300010379 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Sb_50d combined assembly DOE Joint Genome Institute (JGI) 3300010379 Combined Assembly MEGAHIT v. 1.0.6 Yes Yes loy@microbial-ecology.net; Michael.Pester@dsmz.de Alexander Loy; Michael Pester Yes 29476143 Environmental Terrestrial Wetlands Soil Peat Peatlands soil 8407134150 15835846 2780 38 4458 87 Unrestricted 0.0 Combined_assembly 3300040744 *Microbiome Permanent Draft Metagenomes of anaerobic enrichment cultures that dechlorinate hexachlorocyclohexane isomers Combined Assembly of Lab-enriched soil microbial communities from a contaminated agricultural site, Guadeloupe, France (All HCH) Beijing Genomics Institute (BGI), Genome Quebec, Beijing Genomics Institute (BGI) 3300040744 Combined Assembly spades v. 3.12.0 No Yes elizabeth.edwards@utoronto.ca; camillaln@gmail.com Elizabeth A. Edwards; Camilla Nesb? No Environmental Terrestrial Unclassified Soil Contaminated soil 956027026 1257923 181 3 340 6 0.0 Combined_assembly 3300007200 *Microbiome Permanent Draft Cyanobacterial bloom in Marina Bay freashwater reservoir, Singapore (Monthly Sampling) Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Monthly Sampling-Site B) 9 sequencing projects The Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300007200 Combined Assembly CLC Genomics Workbench 8 released per JGI data release policy No Yes boonfei@ualberta.ca BOONFEI TAN No Environmental Aquatic Lake Freshwater Cyanobacterial bloom freshwater lake 374450462 525301 75 34 67 36 0.0 Combined_assembly 3300022553 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Powell_combined assembly DOE Joint Genome Institute (JGI) 3300022553 Combined Assembly Yes Yes rstepanauskas@bigelow.org; shallam@interchange.ubc.ca; jkjarett@lbl.gov Ramunas Stepanauskas; Steven Hallam; Jessica Jarett No Environmental Aquatic Lake Freshwater Unclassified freshwater 1521877888 3395167 1481 8 2423 23 SRX3570897 Unrestricted 0.0 Combined_assembly 3300030617 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden II_Palsa_N2 coassembly DOE Joint Genome Institute (JGI) 3300030617 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 3990753734 8467599 1077 176 1769 307 SRX5355870 Unrestricted 0.0 Combined_assembly 3300040738 *Microbiome Draft Metagenome study on cathode biofilm of microbial fuel cell Combined Assembly of Cathode biofilm bacterial communities from microbial fuel cell in Beijing Jiaotong University, Beijing, China Shanghai Majorbio Bio-pharm Technology Co. 3300040738 Combined Assembly Newbler v. 2.3 released by JGI data releasing policy No Yes zhaojing078207@163.com jing zhao No Engineered Industrial production Biocathode Engineered product Unclassified Cathode biofilm 2376333 2137 0 0 0 0 0.0 Combined_assembly 3300011268 *Microbiome Permanent Draft The Molecular Ecology of Microcystis sp. Blooms in the San Francisco Estuary Delta Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555 Oregon State University 3300011268 Combined Assembly IDBA-UD released by JGI data releasing policy No Yes ottent@onid.orst.edu Timothy Otten No Environmental Aquatic Lotic Freshwater Unclassified freshwater 7.8 437190975 1006694 275 29 459 55 SRX2230798 0.0 Combined_assembly 3300039353 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Iron enrichment metatranscriptomes combined assembly DOE Joint Genome Institute (JGI) 3300039353 Combined Assembly MEGAHIT v. 1.2.9 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater 3439052487 4852533 1315 148 2607 2808 SRX8818263 Unrestricted 0.0 Combined_assembly 3300002879 *Microbiome Permanent Draft Human fecal microbial communities from healthy individuals and Crohn's disease patients at Harvard School of Public Health Assembled contigs of human gut microbial metagenome from Inflammatory Bowel Disease and Treatment (7 pooled healthy) Harvard University 3300002879 Combined Assembly released per JGI data release policy No Yes xie@lanl.gov Gary Xie No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 34354668 69635 59 0 138 1 0.0 Combined_assembly 3300024274 *Microbiome Permanent Draft Membrane Aerated Biofilm Reactor Sulfur Study Combined Assembly of Sloughed biomass day 565 Gp0304183, Gp0304184 University of Michigan Medical School 3300024274 Combined Assembly MEGAHIT v. 1.1.2 released by JGI data releasing policy Yes Yes jesethdv@umich.edu; nglove@umich.edu Jeseth Delgado Vela; Nancy Love No Engineered Bioreactor Unclassified Aerobic Unclassified sloughed biomass 7.7 986350182 1622201 596 27 1005 40 0.0 Combined_assembly 3300007351 *Microbiome Permanent Draft Sanford Underground Research Facility - Deep subsurface aquifer microbial community from Lead, South Dakota Combined Assembly of Gp0115775, Gp0115815 National Aeronautics and Space Administration (NASA) 3300007351 Combined Assembly IDBA-UD v. 1.1.1 Released per PI -- the result has been published. No Yes momper@usc.edu Lily Momper No Environmental Terrestrial Aquifer Deep subsurface Unclassified Deep subsurface aquifer 7.4 1500 749084913 1185224 599 6 901 10 0.0 Combined_assembly 3300050337 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal and Taiga Cordillera Ecozones, Canada. Combined Assembly of 25 SPs Genome Quebec 3300050337 Combined Assembly Megahit v. 1.2.7. released by Vera Onana Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 8223947480 13657919 1724 557 2646 875 0.0 Combined_assembly 3300008157 *Microbiome Permanent Draft Marine eukaryotic communities from various locations to study complex ecological interactions Minidiscus trioculatus alone and Minidiscus trioculatus with Planctomycetes bacterium Co-assembly DOE Joint Genome Institute (JGI) 3300008157 Combined Assembly spades v. 3.6.2 No Yes azworden@mbari.org, azworden@mbari.org; twoyke@lbl.gov Alexandra Worden, Alexandra Worden; Tanja Woyke No Environmental Aquatic Unclassified Marine Unclassified Marine 72822224 69146 2 1 1 1 Unrestricted 0.0 Combined_assembly 3300031118 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Coassembly of Cow X and Y Switchgrass DOE Joint Genome Institute (JGI) 3300031118 Combined Assembly megahit v. 0.2.0 No Yes mhess@lbl.gov, mhess@ucdavis.edu Hess, Matthias, Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 1760403878 4567414 1335 3199 4551 7736 SRX5780726 Unrestricted 0.0 Combined_assembly 3300029944 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden II_Palsa_E1 coassembly DOE Joint Genome Institute (JGI) 3300029944 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 2955022015 6159919 1097 185 1672 307 SRX5355861 Unrestricted 0.0 Combined_assembly 3300009047 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom Combined Assembly of De NOVO T14 (BES) Tyne Sediment Benzoate Gp0125122, Gp0125123, Gp0125658 Shell Corporation 3300009047 Combined Assembly IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 230185399 806998 253 2 467 10 0.0 Combined_assembly 3300023280 *Microbiome Permanent Draft Metagenomes from anaerobic digester of solid waste Combined Assembly of Gp0238881, Gp0242115 University of Toronto 3300023280 Combined Assembly megahit v. 1.1.1 released by Camilla Nesbo No Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Engineered Solid waste Unclassified Food waste Unclassified food waste 2039222861 3014521 544 305 856 397 SRX4986161, SRX4965146 0.0 Combined_assembly 3300010342 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations AD_JPNAca1 DOE Joint Genome Institute (JGI) 3300010342 Combined Assembly released by Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 1745785466 3396417 1019 12 1662 27 SRX2338994 Unrestricted 0.0 Combined_assembly 3300017528 *Microbiome Permanent Draft Microbial metagenomes of rhizospheric soil samples from Willow field trial in the northeast United States Shrub willow rhizosphere microbial communities from Rock Springs field trial, State College, PA, USA Combined Assembly of 48 sequencing projects Pennsylvania State University (USA) 3300017528 Combined Assembly MetaHit released by JGI data releasing policy No Yes jec16@psu.edu John Carlson No Host-associated Plants Rhizosphere Roots Soil rhizosphere 908234383 1214345 268 22 336 21 0.0 Combined_assembly 3300013895 *Microbiome Permanent Draft Sorghum rhizosphere soil microbial communities from California, USA Sorghum rhizosphere microbial community from Fresno, CA, USA. Combined Assembly of 52 SPs QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300013895 Combined Assembly Megahit released by JGI data releasing policy No Yes xuling@berkeley.edu Ling Xu No Mixed, Environmental Terrestrial Unclassified Soil Agricultural land Soil 1848523245 3975135 1707 3752 7800 11383 0.0 Combined_assembly 3300006825 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom Combined Assembly of Gp0125114, Gp0125115, Gp0125116 Shell Corporation 3300006825 Combined Assembly IDBA_UD released per JGI data release policy Yes Yes tianakorin@googlemail.com, ianhead@ncl .ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Tetyana Korin, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 72554893 134411 103 0 152 0 0.0 Combined_assembly 3300035698 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Combined Assembly of Antarctic Ace Lake (124 datasets) J. Craig Venter Institute, J. Craig Venter Institute (JCVI), DOE Joint Genome Institute (JGI) 3300035698 Combined Assembly Megahit v. 1.1.1 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Saline lake 6.94 4053804162 4643002 896 22 1011 17 0.0 Combined_assembly 3300007169 *Microbiome Permanent Draft Cyanobacterial bloom in Marina Bay freshwater reservoir, Singapore (Diel cycle) Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Bottom layer) 8 sequencing projects The Singapore Centre on Environmental Life Sciences Engineering 3300007169 Combined Assembly CLC Genomics Workbench 8 released per JGI data release policy No Yes boonfei@ualberta.ca BOONFEI TAN No Environmental Aquatic Lake Freshwater Cyanobacterial bloom freshwater lake 395534887 578674 57 25 72 23 0.0 Combined_assembly 3300007037 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Combined Assembly of Gp0125671, Gp0125672, Gp0125716 Shell Corporation 3300007037 Combined Assembly IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 80390623 114867 85 1 113 3 0.0 Combined_assembly 3300017917 *Microbiome Permanent Draft Freshwater microbial communities from Auburn University lake, Alabama, USA Freshwater microbial communities from Auburn University lake, Alabama, USA . Combined Assembly of Gp0216759, Gp0216760, Gp0216761, Gp0216762 HudsonAlpha Institute for Biotechnology 3300017917 Combined Assembly megahit released by JGI data releasing policy No Yes qzz0011@auburn.edu Qifan Zeng No Environmental Aquatic Lake Freshwater Unclassified freshwater 445445293 532845 66 0 45 1 0.0 Combined_assembly 3300010429 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations AD_USRAca DOE Joint Genome Institute (JGI) 3300010429 Combined Assembly Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 2942967179 6021843 1315 18 2379 36 SRX2165244 Unrestricted 0.0 Combined_assembly 3300004634 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-1D-10D DOE Joint Genome Institute (JGI) 3300004634 Combined Assembly MEGAHIT v. 0.2.0 Yes Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 3103212823 8202210 966 201 1712 552 SRX2588616 Unrestricted 0.0 Combined_assembly 3300003453 *Microbiome Permanent Draft Volcano-associated fumarole microbial communities from Mt. Erebus, Antarctica, that are thermophilic Combined Assembly of Gp0111477, Gp0111476 University of California, Davis 3300003453 Combined Assembly IDBA-UD; idba-ud, 98% identity released per JGI data release policy No Yes cherbold@lbl.gov, craig.herbold@microbial-ecology.net Craig Herbold No Environmental Terrestrial Fumaroles Volcanic Unclassified Volcano-associated fumarole 8 118195343 167177 104 0 150 0 0.0 Combined_assembly 3300042090 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes PEATcosm2014_co-assembly _10_metaG DOE Joint Genome Institute (JGI) 3300042090 Combined Assembly MetaHipMer 2 v. 0.1.4.v0.1.3-204-gcbec665-Issue18 released based on JGI ITS Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 11195707759 17992194 2342 302 3579 454 SRX3291937 Unrestricted 0.0 Combined_assembly 3300050339 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Prairies ecozone, Canada. Combined Assembly of 40 SPs Genome Quebec 3300050339 Combined Assembly Megahit v. 1.2.7. released by Vera Onana Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 18221255951 31311951 3006 876 4735 1421 0.0 Combined_assembly 3300008985 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom Combined Assembly of De NOVO T8 (BES) Tyne Sediment Benzoate Gp0125117, Gp0125118, Gp0125119 Shell Corporation 3300008985 Combined Assembly IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 210188680 698918 263 2 444 5 0.0 Combined_assembly 3300006838 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom Combined Assembly of Gp0125106, Gp0125107, Gp0125108 Shell Corporation 3300006838 Combined Assembly IDBA_UD released per JGI data release policy No Yes tianakorin@googlemail.com, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Tetyana Korin, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 115883943 224181 114 0 147 0 0.0 Combined_assembly 3300002839 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 11-31A and 11-33A (Combined assembly, ASSEMBLY_DATE=20140611) DOE Joint Genome Institute (JGI) 3300002839 Combined Assembly SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Released by Nikos bc they passed the 6 months embargo date Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 340438145 607522 350 1 624 3 SRX1990926 Unrestricted 0.0 Combined_assembly 3300041017 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from Labiotermes sp. nest in French Guiana. Combined Assembly of 6 SPs University of Luxembourg, Luxembourg Institute of Science and Technology 3300041017 Combined Assembly CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 266460801 378350 2 2 8 5 0.0 Combined_assembly 3300004463 *Microbiome Permanent Draft Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling Combined assembly of Arabidopsis thaliana microbial communities DOE Joint Genome Institute (JGI) 3300004463 Combined Assembly MEGAHIT v. 0.2.0 manual release request from Christa Yes Yes sgtringe@lbl.gov Susannah Tringe No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis thaliana rhizosphere 14997016540 42268018 6790 677 13868 1632 SRX2574178 Unrestricted 0.0 Combined_assembly 3300038382 *Microbiome Finished Fecal bacterial communities from healthy mice in breeding colony, UM, Ann Arbor, Michigan, USA Combined Assembly of Fecal bacterial communities from healthy mice in breeding colony, UM, Ann Arbor, Michigan, USA University of Michigan 3300038382 Combined Assembly MEGAHIT v. 1.0.2 released by JGI data releasing policy Yes Yes mhoostal@med.umich.edu Matt Hoostal No Host-associated Mammals Large intestine Digestive system Fecal Feces from mouse 612826060 733616 527 3 646 3 0.0 Combined_assembly 3300014813 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of St. Lawrence River near Massena, NY, Spring, 27-Apr-2015, Metagenome, Replicates ABC, Gp0208205, Gp0208206, Gp0208207 University of Oregon 3300014813 Combined Assembly Metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 101386381 322954 74 7 113 11 0.0 Combined_assembly 3300009378 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Combined Assembly of Gp0137076, Gp0137077 Georgia Genomics Facility 3300009378 Combined Assembly IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 506269319 627837 181 14 244 25 0.0 Combined_assembly 3300022561 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Borup_combined assembly DOE Joint Genome Institute (JGI) 3300022561 Combined Assembly Yes Yes rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca Ramunas Stepanauskas; Peter Dunfield No Environmental Aquatic Ice Freshwater Glacier Glacier valley 2094287563 3583544 1041 67 1376 90 SRX2525376 Unrestricted 0.0 Combined_assembly 3300008516 *Microbiome Permanent Draft Marine sediment microbial communities from Aarhus Bay station M5, Denmark Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 125 cmbsf. Combined Assembly of MM3PM3 Aarhus University 3300008516 Combined Assembly IDBA_UD released per JGI data release policy No Yes starnas88@gmail.com Piotr Starnawski No Environmental Aquatic Coastal Marine Sediment Marine sediment 745297455 937658 278 0 387 0 0.0 Combined_assembly 3300037189 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Highlands Ecozone, Canada. Combined Assembly of 25 SPs Genome Quebec 3300037189 Combined Assembly Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 4257338475 5756380 509 212 644 187 0.0 Combined_assembly 3300028928 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Seasonal metagenomes from Yukon River University of Oregon 3300028928 Combined Assembly metaspades v. 3.11.0 released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Drinking water Freshwater Unclassified freshwater 1022552728 3380310 947 45 1867 111 0.0 Combined_assembly 3300015062 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Riverine microbial communities from Mississippi River at Belle Chasse, metaT, Summer, Replicates ABC, Gp0208303, Gp0208304, Gp0208305 University of Oregon 3300015062 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 19140906 71147 109 77 221 381 0.0 Combined_assembly 3300013372 *Microbiome Permanent Draft Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs Molecular Research LP (MR DNA) 3300013372 Combined Assembly megahit released by JGI data releasing policy No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 8.23 866257532 2027256 305 25 440 55 0.0 Combined_assembly 3300023191 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from nest in French Guiana. Combined Assembly of Gp0238575, Gp0238576 University of Luxembourg 3300023191 Combined Assembly CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 142423185 477695 1 15 10 53 0.0 Combined_assembly 3300030520 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden III_Palsa_N2 coassembly DOE Joint Genome Institute (JGI) 3300030520 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 6188896390 11621143 1235 154 1737 262 SRX5357865 Unrestricted 0.0 Combined_assembly 3300029911 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden III_Bog_N2 coassembly DOE Joint Genome Institute (JGI) 3300029911 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 3289296598 5537686 1107 181 1556 267 SRX5356825 Unrestricted 0.0 Combined_assembly 3300010051 *Microbiome Permanent Draft Industrial wastewater microbial communities from reactors of effluent treatment plant in South Killingholme, Immingham, England Industrial wastewater microbial communities from reactors of effluent treatment plant in South Killingholme, Immingham, England. Combined Assembly of Gp0151195, Gp0151196 Aalborg University 3300010051 Combined Assembly CLC workbench released per JGI data release policy Yes Yes vierheilig@microbial-ecology.net Julia Vierheilig No Engineered Wastewater Petrochemical Industrial wastewater Unclassified industrial wastewater 598142575 696803 163 3 173 3 0.0 Combined_assembly 3300009872 *Microbiome Permanent Draft Cow rumen metatranscriptome Cow rumen microbiome (microbial/fungal) from cows held on UI at Urbana campus farm, Champaign, IL - Switchgrass. Combined Assembly of Gp0148675, Gp0148676 DOE Joint Genome Institute (JGI), U.S. Department of Energy (DOE) 3300009872 Combined Assembly MEGAHIT (version 0.2.0) released per JGI data release policy No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Rumen 1760403878 4581844 1335 3199 4551 7736 0.0 Combined_assembly 3300009871 *Microbiome Permanent Draft Cow rumen metatranscriptome Cow rumen microbiome (microbial/fungal) from cows held on UI at Urbana campus farm, Champaign, IL - Rumen Fluid.Combined Assembly of Gp0148671, Gp0148672 DOE Joint Genome Institute (JGI), U.S. Department of Energy (DOE) 3300009871 Combined Assembly MEGAHIT (version 0.2.0) released per JGI data release policy No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Rumen 1777714429 4304402 2632 4083 10193 9653 0.0 Combined_assembly 3300017562 *Microbiome Permanent Draft Yellowstone National Park Obsidian Pool microbial communities Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA - Obsidian 3. Combined Assembly of Gp0212718, Gp0212717 Stanford University 3300017562 Combined Assembly SPAdes, metaSPAdes v10.0 and Megahit published in PNAS (release before publication date) No Yes berghuis@stanford.edu Bojk Berghuis No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 65673855 73914 21 0 22 0 0.0 Combined_assembly 3300020048 *Microbiome Permanent Draft Sulfate-impacted lake microbial communities from Northern Minnesota Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915 University of Minnesota - Twin Cities 3300020048 Combined Assembly metaSPAdes released by Daniel Jones No Yes dsjones@umn.edu Daniel Jones No Environmental Aquatic Lake Freshwater Sediment Freshwater lake sediment 1524155483 2417627 405 34 605 49 0.0 Combined_assembly 3300057008 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Combined assembly of SIP viromes DOE Joint Genome Institute (JGI) 3300057008 Combined Assembly MetaHipMer v. 2.1.0.90-g7529d1f-master released based on JGI ITS Yes Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Terrestrial Grasslands Soil Unclassified Soil 185493891 380998 184 2 331 2 Restricted 0.0 Combined_assembly 3300029959 *Microbiome Permanent Draft Bioremediated contaminated groundwater microbial communities from North Railroad Avenue plume (NRAP), New Mexico EPA Superfund site combined assembly DOE Joint Genome Institute (JGI) 3300029959 Combined Assembly spades v. 3.11.1 Yes Yes NNIvanova@lbl.gov; rebecca.reiss@nmt.edu Natalia Ivanova; Rebecca Reiss Yes 27980706 Environmental Aquatic Groundwater Deep subsurface Contaminated Bioremediated contaminated groundwater 2131738074 4001948 1872 29 3031 63 SRX2554384 Unrestricted 0.0 Combined_assembly 3300031574 *Microbiome Permanent Draft Namib Desert soil rainfall metatranscriptomes Desert soil microbial communities from Gobabeb, Namibia. Combined Assembly of 24 SPs Admera Health 3300031574 Combined Assembly trans-ABySS v. 2.0.1 released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Terrestrial Sand Soil Desert Soil 7.5 0 208947621 378428 499 238 2291 1052 0.0 Combined_assembly 3300022758 *Microbiome Permanent Draft Metagen_FISABIO_Pilar Fecal microbial communities from healthy mother-infant pairs in Hospital La Fe, Valencia, Spain. Combined Assembly of 39 SPs Foundation for the Promotion of Health and Biomedical Research (FISABIO), FISABIO Sequencing and Bioinformatics Service 3300022758 Combined Assembly SPAdes v. 3.9 released by JGI data releasing policy No Yes rodrigogarlop@gmail.com Rodrigo Garcia No Host-associated Mammals: Human Large intestine Digestive system Fecal Feces 12838939 27117 1 0 2 0 0.0 Combined_assembly 3300014805 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Yukon River at Pilot Station, AK, Fall, 21-Sep-2015, Metagenome, Replicates ABC, Gp0208194, Gp0208196, Gp0208198 University of Oregon 3300014805 Combined Assembly Metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 58783488 232847 85 8 164 13 0.0 Combined_assembly 3300027989 *Microbiome Permanent Draft Permafrost microbial communities from glacier foreland in Svalbard, Norway Combined Assembly of ML310-ML312 KOREA POLAR RESEARCH INSTITUTE 3300027989 Combined Assembly Megahit v. 1.1.3 released by JGI data releasing policy Yes Yes sarbjeet.niraula@mavs.uta.edu Sarbjeet Niraula No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 7.8 38398242 124506 104 5 228 14 0.0 Combined_assembly 3300013095 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Avena fatua rhizosphere microbial communities from Hopland, California, USA. Combined Assembly of 48 SPs DOE Joint Genome Institute (JGI) 3300013095 Combined Assembly Megahit released by JGI data releasing policy No Yes nuccio1@llnl.gov; mkfstone@berkeley.edu Erin Nuccio; Mary Firestone No Mixed, Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 20224439648 44390453 7826 9262 67530 88011 SRX2557984 0.0 Combined_assembly 3300019790 *Microbiome Permanent Draft Alaskan permafrost microbial communities Permafrost soil microbial communities from Franklin Bluffs, Alaska, USA. Combined Assembly of Gp0223446, Gp0223447, Gp0223448, Gp0223449 Stanford University 3300019790 Combined Assembly SPAdes, metaSPAdes v10.0 and Megahit released by JGI data releasing policy No Yes berghuis@stanford.edu Bojk Berghuis No Environmental Terrestrial Wetlands Soil Permafrost Permafrost soil 505597217 532775 99 0 111 0 0.0 Combined_assembly 3300028454 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat Fecal Pellet Co-assembly of all samples untreated with antibiotics DOE Joint Genome Institute (JGI) 3300028454 Combined Assembly No Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 1064183348 1617970 1330 18 1755 25 SRX3962662 Restricted 0.0 Combined_assembly 3300005265 *Microbiome Permanent Draft Hydrothermal sediment microbial communities from Guaymas Basin, California, USA Hydrothermal sediment microbial communities from Guaymas Basin, California, USA 4484. Combined assembly of Gp0115313 and Gp0146561 University of Texas, Austin 3300005265 Combined Assembly idba released by Kiley Seitz No Yes kws15@utexas.edu Kiley Seitz No Environmental Aquatic Oceanic Marine Sediment Sediment 299376147 332374 83 2 80 1 0.0 Combined_assembly 3300014983 *Microbiome Permanent Draft Cooling water microbiome project Cooling water bacterial community from a nuclear test reactor near Mol, Belgium Combined Assembly of Gp0209298, Gp0209300, Gp0209303, Gp0209304 Laboratory of Medical Microbiology, University of Antwerpen 3300014983 Combined Assembly IDBA-UD released per PI No Yes vdenef@umich.edu Vincent Denef No Engineered Built environment Unclassified Unclassified Unclassified Freshwater cooling water system 4.37 15763423 17440 11 0 15 0 0.0 Combined_assembly 3300028385 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States ANME aggregate JGI 7061.QLV.BNCT.01.C7_combo DOE Joint Genome Institute (JGI) 3300028385 Combined Assembly metaspades v. 3.11.1 Yes Yes rrmalmstrom@lbl.gov; vorphan@gps.caltech.edu Rex Malmstrom; Victoria Orphan No Environmental Aquatic Marine basin floor Marine Sediment marine sediment 4432283 6820 2 0 6 0 Unrestricted 0.0 Combined_assembly 3300017598 *Microbiome Permanent Draft Investigating the Microbiome of Thiomargarita & Thiopilula Thiomargarita spp. associated microbial communities from marine sediment, the Benguela Current, Namibia. Combined Assembly of 5 sequencing projects University of Minnesota - Twin Cities 3300017598 Combined Assembly MEGAHIT v1.0.6.1 released by JGI data releasing policy No Yes beverlyflood@mac.com Beverly Flood No Host-associated Microbial Unclassified Bacteria Unclassified marine sediment 1226801750 1396259 150 4 230 1 0.0 Combined_assembly 3300030000 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden I_Fen_N3 coassembly DOE Joint Genome Institute (JGI) 3300030000 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 4060692643 9425908 2830 338 4827 530 SRX5799148 Unrestricted 0.0 Combined_assembly 3300033753 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States SM metagenomes combined assembly DOE Joint Genome Institute (JGI) 3300033753 Combined Assembly metaspades v. 3.13.0 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 396336479 528849 397 3 525 2 SRX5661305 Unrestricted 0.0 Combined_assembly 3300028204 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Combined Assembly of Gp0060435, Gp0060442 - Site 230 with 0.1UM filter - spades J. Craig Venter Institute, J. Craig Venter Institute (JCVI) 3300028204 Combined Assembly Spades v. 3.11.1 Released per Simon Roux. Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater 6971450 13246 6 0 12 0 0.0 Combined_assembly 3300037827 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests FICUS49499 Metagenome Norway combined assembly (version 2) DOE Joint Genome Institute (JGI) 3300037827 Combined Assembly MEGAHIT v. 1.1.2 Yes Yes kostelecke.uzeniny@seznam.cz; baldrian@biomed.cas.cz Tomas Vetrovsky; Petr Baldrian No Mixed, Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 7985504860 13838915 1256 394 2141 664 SRX5271607 Unrestricted 0.0 Combined_assembly 3300021428 *Microbiome Finished Riverine microbial communities from big rivers of the USA Riverine microbial communities from Columbia River near Beaver Army Terminal, OR, USA. Combined Assembly of 12 SPs University of Oregon 3300021428 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton river 2525552109 8145557 1704 171 3272 380 0.0 Combined_assembly 3300040965 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada. Combined Assembly of 18B_1234 University of Alberta 3300040965 Combined Assembly megahit v. 1.1.1 released by JGI data releasing policy No Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 259419553 333792 84 6 114 7 0.0 Combined_assembly 3300041948 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States EAA2017 plot 1 metatranscriptome combined assembly DOE Joint Genome Institute (JGI) 3300041948 Combined Assembly MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 787982677 1395851 1068 298 3459 2160 SRX8186428 Unrestricted 0.0 Combined_assembly 3300035311 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada. Combined Assembly of E182ab 6SPs University of Alberta 3300035311 Combined Assembly megahit v. 1.1.1 released by JGI data releasing policy No Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified wastewater 114889918 148433 53 0 78 0 0.0 Combined_assembly 3300029882 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden III_Palsa_E1 coassembly DOE Joint Genome Institute (JGI) 3300029882 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 2123833655 3945266 763 176 1144 266 SRX5357463 Unrestricted 0.0 Combined_assembly 3300035312 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada. Combined Assembly of E183abc 8SPs University of Alberta 3300035312 Combined Assembly megahit v. 1.1.1 released by JGI data releasing policy No Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified wastewater 328906744 416165 133 1 175 2 0.0 Combined_assembly 3300004152 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3 DOE Joint Genome Institute (JGI) 3300004152 Combined Assembly MEGAHIT v. 0.2.0 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 4291689268 11589209 1441 97 2804 245 SRX2575206 Unrestricted 0.0 Combined_assembly 3300015212 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Riverine microbial communities from Columbia River near Beaver Army Terminal, OR, USA, metaT, Spring, Replicates ABC, Gp0208255, Gp0208256, Gp0208257 University of Oregon 3300015212 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton Freshwater 487620393 1572519 921 1018 1716 2795 0.0 Combined_assembly 3300031722 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden II_Fen_N3 coassembly DOE Joint Genome Institute (JGI) 3300031722 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 4001880778 10398484 2441 288 4010 441 SRX5799339 Unrestricted 0.0 Combined_assembly 3300028898 *Microbiome Permanent Draft Membrane Aerated Biofilm Reactor Sulfur Study Combined Assembly of Gp0304266, Gp0304267 University of Michigan 3300028898 Combined Assembly Megahit v. 1.1.2 released by JGI data releasing policy Yes Yes nglove@umich.edu Nancy Love No Engineered Bioreactor Unclassified Aerobic Unclassified Suspended biomass 7.7 658080850 969314 290 17 464 15 0.0 Combined_assembly 3300006468 *Microbiome Permanent Draft Deep-sea sediment bacterial and archaeal communities Deep-sea sediment bacterial and archaeal communities from Fram Strait - Combined Assembly of Gp0119454, Gp0119453, Gp0119452, Gp0119451 Center for Biotechnology (CeBiTec), Bielefeld Univeristy 3300006468 Combined Assembly Spades 3.6.0 released per JGI data release policy Yes Yes jrapp@mpi-bremen.de Josephine Rapp No Environmental Aquatic Oceanic Marine Sediment sediment 3369865366 9832840 1187 136 2137 269 0.0 Combined_assembly 3300009132 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Combined Assembly of Gp0139359, Gp0139510 Georgia Genomics Facility 3300009132 Combined Assembly IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 813746638 1074092 447 31 537 35 0.0 Combined_assembly 3300019891 *Microbiome Permanent Draft Aerobic methanotrophic bioreactor microbial communities at MBL, Massachusetts, USA Aerobic methanotrophic bioreactor microbial communities at MBL, Massachusetts, USA Combined Assembly of Gp0225440, Gp0225442, Gp0225443, Gp0225441 Marine Biological Laboratory 3300019891 Combined Assembly MegaHit released by JGI data releasing policy No Yes nuria.fgonzalez@gmail.com Nuria Fernandez Gonzalez No Engineered Bioreactor Unclassified Aerobic Unclassified Bioreactor 184931615 208954 62 7 77 8 0.0 Combined_assembly 3300024348 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series 0.2um to 3um size fraction coassembly DOE Joint Genome Institute (JGI) 3300024348 Combined Assembly spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 1833020290 3751505 1019 121 1580 200 SRX2753609 Unrestricted 0.0 Combined_assembly 3300022556 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Kivu_combined assembly DOE Joint Genome Institute (JGI) 3300022556 Combined Assembly Yes Yes rstepanauskas@bigelow.org; sean.crowe@ubc.ca Ramunas Stepanauskas; Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified Anoxic lake water 1887374268 3725119 1783 6 2759 35 SRX2525295 Unrestricted 0.0 Combined_assembly 3300031610 *Microbiome Permanent Draft Namib Desert soil rainfall metatranscriptomes Desert soil microbial communities from Gobabeb, Namibia. Combined Assembly of 12 control samples Admera Health 3300031610 Combined Assembly trans-ABySS v. 2.0.1 released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Terrestrial Sand Soil Desert Soil 7.5 0 100565163 180695 219 124 1213 552 0.0 Combined_assembly 3300022305 *Microbiome Permanent Draft Riverine microbial communities from Willamette River, Corvallis, OR, USA Lab enrichment of the riverine viral communities from Willamette River, OR, USA. Combined Assembly of 45 SPs Oregon State University 3300022305 Combined Assembly metaspades v.3.11.0 released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified freshwater 1604332853 6536016 132 12 245 17 0.0 Combined_assembly 3300030339 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden III_Bog_N1 coassembly DOE Joint Genome Institute (JGI) 3300030339 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 3290357290 7233048 2286 276 3680 448 SRX5356682 Unrestricted 0.0 Combined_assembly 3300003688 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Coassembly of YNP Bryant MS undermat 2012 and YNP Bryant MS upper layer 2012 DOE Joint Genome Institute (JGI) 3300003688 Combined Assembly SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes dab14@psu.edu Donald A. Bryant, Donald Bryant Yes 27379049 Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic microbial mat 274780539 516443 186 0 269 2 SRX2554541 Unrestricted 0.0 Combined_assembly 3300009370 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Combined Assembly of Gp0127930, Gp0127931 Georgia Genomics Facility 3300009370 Combined Assembly IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 686912309 833422 238 153 333 216 0.0 Combined_assembly 3300007102 *Microbiome Permanent Draft Sediment microbial communities enriched with perchlorate of varying salinity from San Francisco Bay shoreline Combined Assembly of Marine Sediment Inoculum and Enrichments QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300007102 Combined Assembly MEGAHIT v. 1.0.2 released per JGI data release policy No Yes jdcoates@berkeley.edu John Coates No Mixed, Engineered Lab enrichment Anaerobic media Defined media Unclassified Marine sediment 445811513 827863 447 17 753 29 0.0 Combined_assembly 3300029943 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden I_Palsa_N3 coassembly DOE Joint Genome Institute (JGI) 3300029943 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 3221319461 6343779 938 144 1554 255 SRX5355667 Unrestricted 0.0 Combined_assembly 3300001362 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Lake Mendota Deep Hole Epilimnion 25Sep08 (Lake Mendota Combined Assembly 24 Epilimnion Samples, Apr 2013 Assem) DOE Joint Genome Institute (JGI) 3300001362 Combined Assembly Released by Nikos bc they passed the 6 months embargo date Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 402979547 839450 349 123 645 170 0.0 Combined_assembly 3300008470 *Microbiome Permanent Draft Sediment core microbial communities from Adelie Basin, Antarctica Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563 Marine Biological Laboratory 3300008470 Combined Assembly megahit released per PI No Yes scarr@bigelow.org, carrs@hartwick.edu Stephanie Carr No Environmental Aquatic Oceanic Marine Sediment sediment 1176346938 2285017 602 50 889 64 0.0 Combined_assembly 3300033060 *Microbiome Permanent Draft Mercury Periphyton Project Periphyton microbial communities from the St. Maurice River, Quebec, Canada. Combined Assembly of Gp0389161, Gp0389135, Gp0389136 Genome Quebec 3300033060 Combined Assembly Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Periphyton Freshwater periphyton 1979160321 3332189 1167 501 2008 868 0.0 Combined_assembly 3300023207 *Microbiome Permanent Draft Metagenomes from anaerobic digester of solid waste Combined Assembly of Gp0238866, Gp0238878, Gp0238879 University of Toronto 3300023207 Combined Assembly megahit v. 1.1.1 No Yes elizabeth.edwards@utoronto.ca; camillaln@gmail.com Elizabeth A. Edwards; Camilla Nesb? No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic digester digestate 2045762495 3238902 1149 10 1742 10 0.0 Combined_assembly 3300024273 *Microbiome Permanent Draft Estuarine microbial communities from Beaufort Sea coastal lagoons, Alaska, USA Estuarine microbial communities from the Beaufort Sea coast of Alaska, Bernard Point, Alaska, USA. Combined Assembly of 35 meta SPs Oregon State University Center for Genome Research and Biocomputing 3300024273 Combined Assembly MetaSPAdes v. 3.11.0 released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Coastal Marine Unclassified Estuary 3033767370 8414047 1913 613 3338 1504 0.0 Combined_assembly 3300015088 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Riverine microbial communities from St. Lawrence River near Massena, NY, USA, metaT, Spring, Replicates ABC, Gp0208276, Gp0208277, Gp0208278 University of Oregon 3300015088 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 94680067 297744 160 279 413 655 0.0 Combined_assembly 3300034641 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Dewar Creek hot combined GAL08 SPS assembly 1 DOE Joint Genome Institute (JGI) 3300034641 Combined Assembly spades v. 3.13.0 No Yes rstepanauskas@bigelow.org; ruhl.ilona@gmail.com Ramunas Stepanauskas; Ilona Ruhl No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 1925128 1947 1 0 1 0 Unrestricted 0.0 Combined_assembly 3300039354 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Environmental water column metatranscriptomes combined assembly DOE Joint Genome Institute (JGI) 3300039354 Combined Assembly MEGAHIT v. 1.2.9 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater 2762866098 4069028 2192 221 4176 4516 SRX8834097 Unrestricted 0.0 Combined_assembly 3300047519 *Microbiome Permanent Draft Sediment microcosms microbial communities from Lake Michigan coastal wetlands, St. Ignace, MI, USA Combined Assembly of Sediment microcosms microbial communities from Lake Michigan coastal wetlands, St. Ignace, MI, USA; experimental crude Michigan State University 3300047519 Combined Assembly MEGAHIT v. 1.1.2 released per PI -- IMGSUPP-4295 No Yes deric.learman@cmich.edu Deric Learman No Engineered Artificial ecosystem Wetland sediment Sediment microcosm Unclassified sediment microcosm 0 to .3 2847108799 4982187 1221 85 2157 130 0.0 Combined_assembly 3300069203 *Microbiome Finished Sediment microbial communities from the Saint-Maurice River in Quebec, Canada Combined Assembly of River sediment microbial communities from the Saint-Maurice River near Wemotaci in Quebec, Canada (CA_6 samples) Genome Quebec 3300069203 Combined Assembly Megahit v. 1.2.7 released by Charlene Lawruk-Desjardins No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Sediment River sediment 0 to .01 15308412809 27681875 3157 222 5738 364 0.0 Combined_assembly 3300008982 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom Combined Assembly of De NOVO T5 (live) Tyne Sediment Benzoate Gp0125094, Gp0125095, Gp0125096 Shell Corporation 3300008982 Combined Assembly IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl .ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 189266441 623501 221 1 566 2 0.0 Combined_assembly 3300005513 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Combined assembly of arab plate scrape CL_Cvi (Combined Assembly) DOE Joint Genome Institute (JGI) 3300005513 Combined Assembly MEGAHIT v. 0.2.0 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 790937801 1550966 221 0 1183 5 SRX1991097 Unrestricted 0.0 Combined_assembly 3300014568 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Columbia River near Beaver Army Terminal, OR, Summer, 8-Aug-2015, Metagenome, Replicates ABC, Gp0208174, Gp0208176, Gp0208178 University of Oregon 3300014568 Combined Assembly Metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 23225910 90883 34 4 90 11 0.0 Combined_assembly 3300028304 *Microbiome Permanent Draft Halite endoliths microbial communities diversity study Halite microbial communities from Salar Grande, Atacama Desert, Chile. Combined Assembly of Gp0154194, Gp0154467 Johns Hopkins Bayview Research CORES 3300028304 Combined Assembly metaSPAdes v. 3.11 released by JGI data releasing policy Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero Yes 31273300 Environmental Terrestrial Unclassified Geologic Unclassified evaporite 395461913 487455 78 1 79 1 0.0 Combined_assembly 3300007177 *Microbiome Permanent Draft Cyanobacterial bloom in Marina Bay freshwater reservoir, Singapore (Diel cycle) Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface and Bottom layers) 16 sequencing projects The Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300007177 Combined Assembly CLC Genomics Workbench 8 released per JGI data release policy No Yes boonfei@ualberta.ca BOONFEI TAN No Environmental Aquatic Lake Freshwater Cyanobacterial bloom freshwater lake 896165002 1256590 114 59 116 47 0.0 Combined_assembly 3300022554 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Dewar_combined assembly DOE Joint Genome Institute (JGI) 3300022554 Combined Assembly Yes Yes jkjarett@lbl.gov; rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca Jessica Jarett; Ramunas Stepanauskas; Peter Dunfield No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 7.93 1023108986 1512420 752 5 1038 9 SRX2839018 Unrestricted 0.0 Combined_assembly 3300028831 *Microbiome Permanent Draft Grassland soil metagenome under climate warming Soil microbial communities from McClain County, Oklahoma, USA. Combined Assembly of 09-16 all control plots Oklahoma Medical Research Foundation 3300028831 Combined Assembly Velvet v. 0.7.57 released by JGI data releasing policy No Yes guoxue0601@sina.com Xue Guo No Environmental Terrestrial Sand Soil Grasslands Soil 4068705616 5511417 722 110 724 93 0.0 Combined_assembly 3300015065 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Riverine microbial communities from Yukon River at Pilot Station, AK, USA , metaT, Spring, Replicates ABC, Gp0208267, Gp0208268, Gp0208269 University of Oregon 3300015065 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 34038314 125356 76 203 154 742 0.0 Combined_assembly 3300029922 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden III_Fen_E1 coassembly DOE Joint Genome Institute (JGI) 3300029922 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 3430829502 5915643 1272 280 1826 445 SRX5356846 Unrestricted 0.0 Combined_assembly 3300041955 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes PEATcosm2014_co-assembly _60_metaG DOE Joint Genome Institute (JGI) 3300041955 Combined Assembly metaspades v. 3.14.1 released based on JGI ITS Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 3351637507 4551927 727 10 973 8 SRX3291950 Unrestricted 0.0 Combined_assembly 3300009303 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom Combined Assembly of De NOVO T18 (BES) Tyne Sediment Benzoate Gp0123708, Gp0123962, Gp0123963 Shell Corporation 3300009303 Combined Assembly IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, nicolas.tsesmetzis@shell.com; ianhead@ncl.ac.uk Ian Head, Nicolas Tsesmetzis; Ian Head No Environmental Aquatic River Freshwater Sediment Sediment 237857864 869736 359 18 554 28 0.0 Combined_assembly 3300023209 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Riverine microbial communities from big rivers of the USA. Combined Assembly of 57 SPs University of Oregon 3300023209 Combined Assembly metaspades v. 3.11.0 released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton Freshwater 2161874190 7470996 3727 6042 8774 19723 0.0 Combined_assembly 3300029915 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden III_Bog_E1 coassembly DOE Joint Genome Institute (JGI) 3300029915 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 2529485356 4639424 869 151 1342 209 SRX5356667 Unrestricted 0.0 Combined_assembly 3300060348 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Rollainville truffle ground Metatranscriptome Co-Assembly DOE Joint Genome Institute (JGI) 3300060348 Combined Assembly MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 8959762756 15548104 1880 1251 12516 5536 SRX4546935 Restricted 0.0 Combined_assembly 3300047517 *Microbiome Permanent Draft Sediment microcosms microbial communities from Lake Michigan coastal wetlands, St. Ignace, MI, USA Combined Assembly of Sediment microcosms microbial communities from Lake Michigan coastal wetlands, St. Ignace, MI, USA; experimental controls Michigan State University 3300047517 Combined Assembly MEGAHIT v. 1.1.2 released per PI -- IMGSUPP-4295 No Yes deric.learman@cmich.edu Deric Learman No Engineered Artificial ecosystem Wetland sediment Sediment microcosm Unclassified sediment microcosm 0 to .3 2979092779 5221115 1245 72 2251 128 0.0 Combined_assembly 3300030019 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden II_Fen_E2 coassembly DOE Joint Genome Institute (JGI) 3300030019 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 2988915246 6895340 2161 227 3677 359 SRX5355851 Unrestricted 0.0 Combined_assembly 3300028947 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Seasonal metagenomes from StLawrence River University of Oregon 3300028947 Combined Assembly metaspades v. 3.11.0 released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 2568413134 7041920 1095 113 1900 218 0.0 Combined_assembly 3300002069 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Barrow Graham LP Ref core NGADG0002-212 (Barrow Graham LP Ref core NGADG0002-212,NGADG0004-211, ASSEMBLY_DATE=20131010) DOE Joint Genome Institute (JGI) 3300002069 Combined Assembly Released by Nikos bc they passed the 6 months embargo date Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 642577143 1442928 534 8 982 12 SRX1990807 0.0 Combined_assembly 3300022239 *Microbiome Permanent Draft Chao soil viral communities from agricultural field in Jiangsu, China Combined Assembly of Gp0272081, Gp0272082 Shanghai Majorbio Bio-pharm Technology Co. 3300022239 Combined Assembly HGAP_Assembly.2 released by JGI data releasing policy No Yes llhan@rcees.ac.cn lili han No Environmental Terrestrial Unclassified Soil Agricultural land Soil 20312037 28689 0 0 0 0 0.0 Combined_assembly 3300002641 *Microbiome Permanent Draft Cattle and sheep rumen microbial communities from New Zealand, for comparative studies NZ sheep rumen microbiome combined assembly DOE Joint Genome Institute (JGI) 3300002641 Combined Assembly released based on JGI ITS No Yes cfan@lbl.gov Christina Fan, Hei Fan No Host-associated Mammals Foregut, Stomach Digestive system Rumen Cattle and sheep rumen 6189930821 11941120 10494 622 17953 985 SRX3310934, SRX3310935, SRX3310936 Unrestricted 0.0 Combined_assembly 3300015071 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Riverine microbial communities from Mississippi River at Belle Chasse, metaT, Fall, Replicates ABC, Gp0208306, Gp0208307, Gp0208308 University of Oregon 3300015071 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton Freshwater 40899072 155064 66 701 185 1513 0.0 Combined_assembly 3300031128 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Oak Summer Coassembly Site 11 - Champenoux / Amance forest DOE Joint Genome Institute (JGI) 3300031128 Combined Assembly MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 3946456928 8409170 1874 1966 25792 23834 SRX3345470 Unrestricted 0.0 Combined_assembly 3300011120 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Combined assembly of Microbial Forest Soil metaT DOE Joint Genome Institute (JGI) 3300011120 Combined Assembly MEGAHIT v. 1.0.3 No Yes jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 3377985324 7779196 53998 255066 177488 459107 SRX2014392 Unrestricted 0.0 Combined_assembly 3300035454 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada. Combined Assembly of E181 19 SPs University of Alberta 3300035454 Combined Assembly megahit v. 1.1.1 released by JGI data releasing policy No Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified wastewater 639856972 812203 257 4 306 8 0.0 Combined_assembly 3300010345 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations AD_JPNAca2 DOE Joint Genome Institute (JGI) 3300010345 Combined Assembly released by Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 1929231048 3773315 1036 9 1703 28 SRX2158029 Unrestricted 0.0 Combined_assembly 3300009368 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Combined Assembly of Gp0127928, Gp0127929 Georgia Genomics Facility 3300009368 Combined Assembly IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 700984075 897343 375 11 453 14 0.0 Combined_assembly 3300030741 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly DOE Joint Genome Institute (JGI) 3300030741 Combined Assembly MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 5309792221 10737143 507 417 5249 2101 SRX4010651 Unrestricted 0.0 Combined_assembly 3300028453 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat Fecal Pellet Co-assembly of all samples treated with penicillin and streptomycin from Gen5 and Gen10 DOE Joint Genome Institute (JGI) 3300028453 Combined Assembly No Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 310412197 370788 117 36 140 67 SRX4038240 Unrestricted 0.0 Combined_assembly 3300027507 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication APAL treatment+control metatranscriptome co-assembly DOE Joint Genome Institute (JGI) 3300027507 Combined Assembly MEGAHIT v. 1.1.2 Yes Yes momedinamunoz@gmail.com Medina Medina No Host-associated Invertebrates Coral Cnidaria Unclassified coral 382327242 548701 95 221 1836 1336 SRX3998424 Unrestricted 0.0 Combined_assembly 3300010350 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations AD_HKSTca DOE Joint Genome Institute (JGI) 3300010350 Combined Assembly released by Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 2200919205 4528999 1259 18 2089 28 SRX2157913 Unrestricted 0.0 Combined_assembly 3300011975 *Microbiome Permanent Draft Norwegian Young Sea Ice 2015 - N-ICE15 Seawater microbial communities from Norwegian Young Sea Ice, Arctic Ocean, Norway, 2015. Combined Assembly of 9 SPs correct ver. LGC Genomics 3300011975 Combined Assembly Ray v 2.3.1 released by JGI data releasing policy No Yes antonioggsousa@gmail.com; cmagalhaes@ciimar.up.pt Antonio Sousa; Catarina Magalh?es No Environmental Aquatic Oceanic Marine Aphotic zone marine 11493767 41172 61 12 114 25 0.0 Combined_assembly 3300031918 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden III_Fen_N3 coassembly DOE Joint Genome Institute (JGI) 3300031918 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 4487148368 9664934 1774 166 2877 255 SRX5357461 Unrestricted 0.0 Combined_assembly 3300038810 *Microbiome Finished Deep-sea sponge tissue microbial communities from various sponge species in Cantabrian Sea, Spain Deep-sea sponge tissue microbial communities in Geodia barretti from Cantabrian Sea, Spain. Combined Assembly of Gp0459013, Gp0459077, Gp0459078 University of Liverpool 3300038810 Combined Assembly Trinity v. 2.8.4 released by JGI data releasing policy No Yes diezc08@gmail.com Cristina Diez-Vives No Host-associated Porifera Unclassified Sponge Unclassified Deep-sea sponge tissue 368487485 532995 2 0 1 0 0.0 Combined_assembly 3300014816 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Columbia River near Beaver Army Terminal, OR, Fall, 3-Nov-2015, Metagenome, Replicates ABC, Gp0208179, Gp0208181, Gp0208182 University of Oregon 3300014816 Combined Assembly Metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 99233437 358965 109 12 219 15 0.0 Combined_assembly 3300014979 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Riverine microbial communities from Altamaha River at Everett City, GA, USA - Winter, Replicates ABC, Gp0208299, Gp0208297, Gp0208298 University of Oregon 3300014979 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 638444 2570 5 6 17 24 0.0 Combined_assembly 3300042672 *Microbiome Finished Deep-sea sponge tissue microbial communities from various sponge species in Cantabrian Sea, Spain Deep-sea sponge tissue microbial communities in three species from Cantabrian Sea, Spain. Combined assembly of 18 SPs University of Liverpool 3300042672 Combined Assembly Trinity v. 2.8.4 released by JGI data releasing policy No Yes diezc08@gmail.com Cristina Diez-Vives No Host-associated Porifera Unclassified Sponge Unclassified Deep-sea sponge tissue 636615061 980510 0 0 0 0 0.0 Combined_assembly 3300010163 *Microbiome Permanent Draft Ictidomys tridecemlineatus (13 lined ground squirrel) cecal microbiome Cecal microbial community of the 13 lined ground squirrel in Duluth, Minnesota, USA. Combined Assembly of 10 SPs University of Minnesota - Twin Cities 3300010163 Combined Assembly IDBA_UD v. 1.1.1 released per JGI data release policy No Yes jrsieber@d.umn.edu Jessica Sieber No Host-associated Mammals Large intestine Digestive system Cecum Ictidomys tridecemlineatus cecum 1790662459 2538340 2817 13 3627 10 0.0 Combined_assembly 3300017833 *Microbiome Finished Black Sea metagenomes Marine microbial communities from water column in the Black Sea, Bulgaria. Combined Assembly of Gp0156054, Gp0156055, Gp0156056 University Medical Center Utrecht 3300017833 Combined Assembly metaSPAdes released by JGI data releasing policy No Yes laura.villanueva@nioz.nl Laura Villanueva No Environmental Aquatic Epipelagic Marine Unclassified marine 1930034 1852 2 0 1 0 0.0 Combined_assembly 3300031555 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goal Fecal Pellet Co-assembly of all three pellet samples and three diluted pellet samples.(v2) (version 2) DOE Joint Genome Institute (JGI) 3300031555 Combined Assembly spades v. 3.12.0 Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 9248697092 14307380 12905 60 16746 69 SRX3963493 Unrestricted 0.0 Combined_assembly 3300030294 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden II_Fen_E3 coassembly DOE Joint Genome Institute (JGI) 3300030294 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 4290063941 9661226 2327 235 3769 364 SRX5355853 Unrestricted 0.0 Combined_assembly 3300042980 *Microbiome Draft Aquatic microalgae cultures microbial communities from IPM, Hamburg, Germany Combined Assembly of Microalgae culture of Chlorella vulgaris (Gp0539874, Gp0542804, Gp0542805) HPI Heinrich-Pette-Institut 3300042980 Combined Assembly metaSpades v. 3.1 released by JGI data releasing policy No Yes ines.krohn@uni-hamburg.de Ines KROHN No Host-associated Algae Unclassified Microalgae Unclassified Microalgae 98464293 132459 10 1 21 1 0.0 Combined_assembly 3300022549 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Cold Creek_combined assembly DOE Joint Genome Institute (JGI) 3300022549 Combined Assembly Yes Yes rstepanauskas@bigelow.org; duane.moser@dri.edu Ramunas Stepanauskas; Duane Moser No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 960249336 2218252 1128 165 1888 230 SRX2948574 Unrestricted 0.0 Combined_assembly 3300030580 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden II_Palsa_N1 coassembly DOE Joint Genome Institute (JGI) 3300030580 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 3744996439 7634552 1001 178 1569 277 SRX5355869 Unrestricted 0.0 Combined_assembly 3300033630 *Microbiome Permanent Draft Methanogenic acetone degrading enrichment culture Lab enriched anoxic sediment microbial communities from a polluted creek near Konstanz, Germany. Combined Assembly of Gp0397562, Gp0397563 GATC-Biotech AG, Konstanz, Germany 3300033630 Combined Assembly MetaSpades v. 3.13.0 released by JGI data releasing policy Yes Yes jasmin.frey@uni-konstanz.de Jasmin Frey No Environmental Aquatic Creek Freshwater Sediment anoxic sediment 137523774 252705 64 3 164 6 0.0 Combined_assembly 3300028222 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Combined Assembly of Gp0060397, Gp0060465 - Site 231 with 0.1UM filter - spades J. Craig Venter Institute, J. Craig Venter Institute (JCVI) 3300028222 Combined Assembly Spades v. 3.11.1 Released per Simon Roux. Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater 29126306 60658 11 0 12 0 0.0 Combined_assembly 3300014837 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Columbia River near Beaver Army Terminal, OR, Winter, 9-Feb-2016, Metagenome, Replicates ABC, Gp0208184, Gp0208185, Gp0208186 University of Oregon 3300014837 Combined Assembly Metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 1167083164 3437056 676 42 1235 119 0.0 Combined_assembly 3300000439 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem) DOE Joint Genome Institute (JGI) 3300000439 Combined Assembly Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 259543496 352188 137 37 159 53 0.0 Combined_assembly 3300022547 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Wilbur_combined assembly DOE Joint Genome Institute (JGI) 3300022547 Combined Assembly Yes Yes jkjarett@lbl.gov; rstepanauskas@bigelow.org Jessica Jarett; Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 7.48 456199054 840142 478 4 729 3 SRX2526466 Unrestricted 0.0 Combined_assembly 3300045701 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Semi-Arid Plateaux ecozone, Canada Combined Assembly of 21 SPs Genome Quebec 3300045701 Combined Assembly Megahit v. 1.2.7. released by Vera Onana Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 9640059718 15784781 1697 573 2651 829 0.0 Combined_assembly 3300005046 *Microbiome Permanent Draft Activated sludge wastewater microbial communities from Ann Arbor, Michigan, USA Combined Assembly of Gp0111541, Gp0111542, Gp0111543 University of Michigan 3300005046 Combined Assembly IDBA released per JGI data release policy No Yes nglove@umich.edu Nancy Love No Engineered Wastewater Unclassified Activated Sludge Unclassified Wastewater biotreactor 142856771 324372 91 0 146 0 0.0 Combined_assembly 3300032739 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest Soil Metatranscriptomics Site 2 LB Combined Assembly DOE Joint Genome Institute (JGI) 3300032739 Combined Assembly MEGAHIT v. 1.1.2 Yes Yes ake.olson@slu.se; francis.martin@inrae.fr Ake Olson; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 2528048767 4692595 92 93 429 549 SRX3344936 Unrestricted 0.0 Combined_assembly 3300009431 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Combined Assembly of Gp0137033, Gp0137034 Georgia Genomics Facility 3300009431 Combined Assembly IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 1405693252 1554510 453 19 592 21 0.0 Combined_assembly 3300009945 *Microbiome Permanent Draft Stable isotope probing incubations of microbial communities from Chocolate Pots hot springs, Yellowstone National Park, Wyoming, USA Combined Assembly of Gp0139326, Gp0139349, Gp0139350, Gp0139351 University of Wisconsin, Madison 3300009945 Combined Assembly CLC Genomics Workbench v. 7.5.1 released per JGI data release policy Yes Yes nwfortney@gmail.com, nwfortney@gmail.com; eroden@geology.wisc.edu Nathaniel Fortney, Nathaniel Fortney; Eric Roden No Environmental Aquatic Hot (42-90C) Thermal springs Neutral Hot spring water column 5.82 238746335 407776 245 1 308 2 0.0 Combined_assembly 3300029999 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden I_Palsa_E3 coassembly DOE Joint Genome Institute (JGI) 3300029999 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 3919739966 7615340 1173 156 1970 227 SRX5355628 Unrestricted 0.0 Combined_assembly 3300032756 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest Soil Metatranscriptomics Site 2 Humus Litter Mineral Combined Assembly DOE Joint Genome Institute (JGI) 3300032756 Combined Assembly MEGAHIT v. 1.1.2 Yes Yes francis.martin@inrae.fr; ake.olson@slu.se Francis M. Martin; Ake Olson No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 4680972715 9620523 264 163 1600 1123 SRX3345043 Unrestricted 0.0 Combined_assembly 3300067032 *Microbiome Permanent Draft Terrestrial soil microbial communities from various NEON sites located in USA and Puerto Rico NEON combined assembly DOE Joint Genome Institute (JGI) 3300067032 Combined Assembly MetaHipMer v. 2.1.0.2.381-gc98fb05f-OptimizeAdapterTrimming released based on JGI ITS Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Terrestrial Shrubland Soil Unclassified Terrestrial soil 182982858934 343945133 23625 4245 33637 6394 SRX22161271 Unrestricted 0.0 Combined_assembly 3300006652 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom Combined Assembly of Gp0123698, Gp0123960, Gp0123961 Shell Corporation 3300006652 Combined Assembly IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, nicolas.tsesmetzis@shell.com; ianhead@ncl.ac.uk Nicolas Tsesmetzis, Nicolas Tsesmetzis; Ian Head No Environmental Aquatic River Freshwater Sediment Sediment 89253866 185278 95 0 149 0 0.0 Combined_assembly 3300030524 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden II_Palsa_N3 coassembly DOE Joint Genome Institute (JGI) 3300030524 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 3569077585 7504109 928 156 1561 236 SRX5355874 Unrestricted 0.0 Combined_assembly 3300029705 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat Fecal Pellets diluted in media DOE Joint Genome Institute (JGI) 3300029705 Combined Assembly spades v. 3.11.1 Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 5856320095 9908475 7024 26 9192 41 SRX3963535 Unrestricted 0.0 Combined_assembly 3300007061 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Combined Assembly of Gp0125710, Gp0125712, Gp0125662 Shell Corporation 3300007061 Combined Assembly IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 103265527 175221 83 0 135 0 0.0 Combined_assembly 3300022541 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Gongxiaoshe_combined assembly DOE Joint Genome Institute (JGI) 3300022541 Combined Assembly Yes Yes rstepanauskas@bigelow.org; brian.hedlund@unlv.edu Ramunas Stepanauskas; Brian Hedlund No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring 7.29 126182832 201885 122 1 149 1 SRX2753917 Unrestricted 0.0 Combined_assembly 3300038441 *Microbiome Permanent Draft Soil microbial communities from agricultural site in Penn Yan, New York, United States Combined assembly SIP soil DOE Joint Genome Institute (JGI) 3300038441 Combined Assembly metahipmer v. NA Yes Yes dbuckley@cornell.edu Dan Buckley No Environmental Terrestrial Agricultural land Soil Unclassified soil 6671437430 12900700 313 158 848 298 SRX5246691 Unrestricted 0.0 Combined_assembly 3300008948 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom Combined Assembly of De NOVO T10 (BES) Tyne Sediment Benzoate Gp0125656, Gp0125657, Gp0125121 Shell Corporation 3300008948 Combined Assembly IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 220020862 753350 250 0 802 3 0.0 Combined_assembly 3300031469 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Fir Spring Coassembly Site 11 - Champenoux / Amance forest DOE Joint Genome Institute (JGI) 3300031469 Combined Assembly MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 3934156845 8711543 1125 1486 36138 19009 SRX3346472 Unrestricted 0.0 Combined_assembly 3300015374 *Microbiome Permanent Draft Arabidopsis rhizosphere microbial communities from the University of North Carolina Col-0 rhizosphere combined assembly DOE Joint Genome Institute (JGI) 3300015374 Combined Assembly MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov; dangl@email.unc.edu Susannah Tringe; Jeff Dangl Yes 22859206 Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 10131200759 22649206 6479 288 10969 529 Unrestricted 0.0 Combined_assembly 3300037298 *Microbiome Permanent Draft Maize rhizosphere soil microbial communities from experimental field of UNL, Havelock, Lincoln, Nebraska Maize rhizosphere soil microbial communities from field in Lincoln, Nebraska, USA. Combined Assembly of 18 SPs University of Nebraska Medical Center 3300037298 Combined Assembly Trinity v. 2.8.6 released by JGI data releasing policy No Yes wangplant@gmail.com PENG WANG No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 25381926 41952 195 86 494 345 0.0 Combined_assembly 3300016637 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Combined Assembly of Gp0060435, Gp0060442: dna-ANTRC230_01_hybrid_final.fasta J. Craig Venter Institute, J. Craig Venter Institute (JCVI) 3300016637 Combined Assembly Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater 12715552 26444 11 0 18 0 0.0 Combined_assembly 3300017482 *Microbiome Permanent Draft Yellowstone National Park Obsidian Pool microbial communities Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA - Obsidian 2. Combined Assembly of Gp0212715, Gp0212716 Stanford University 3300017482 Combined Assembly SPAdes, metaSPAdes v10.0 and Megahit published in PNAS (release before publication date) No Yes berghuis@stanford.edu Bojk Berghuis No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 83884807 99706 26 0 34 0 0.0 Combined_assembly 3300014795 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of St. Lawrence River near Massena, NY, Summer, 21-Jul-2015, Metagenome, Replicates ABC, Gp0208208, Gp0208209, Gp0208210 University of Oregon 3300014795 Combined Assembly Metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 61368534 212557 61 8 124 8 0.0 Combined_assembly 3300030771 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Coassembly of Cow Y Switchgrass DOE Joint Genome Institute (JGI) 3300030771 Combined Assembly megahit v. 0.2.0 No Yes mhess@lbl.gov, mhess@ucdavis.edu Hess, Matthias, Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 788163767 1879895 167 1873 1079 3926 SRX5780735 Unrestricted 0.0 Combined_assembly 3300064085 *Microbiome Finished Deep-sea sponge tissue microbial community of Geodia henstcheli from Schultz Bank, Norwegian Sea Combined Assembly of Deep-sea sponge tissue microbial communities of Geodia henstcheli from Schultz Bank, Norwegian Sea Natural History Museum, London 3300064085 Combined Assembly Trinity v. 2.0.6 No Yes diezc08@gmail.com Cristina Diez-Vives No Host-associated Porifera Tissue Sponge Unclassified Deep-sea sponge tissue 1352632156 1929205 228 19 633 35 0.0 Combined_assembly 3300030772 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Coassembly of Cow X Switchgrass DOE Joint Genome Institute (JGI) 3300030772 Combined Assembly megahit v. 0.2.0 No Yes mhess@lbl.gov, mhess@ucdavis.edu Hess, Matthias, Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 1072925324 3011975 1224 2237 4154 6008 SRX5780726 Unrestricted 0.0 Combined_assembly 3300004643 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3 DOE Joint Genome Institute (JGI) 3300004643 Combined Assembly MEGAHIT v. 0.2.0 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 7419359307 22053610 2770 104 6268 231 SRX1990516 Unrestricted 0.0 Combined_assembly 3300028916 *Microbiome Permanent Draft Metagenomes from methanogenic benzene-degrading cultures Lab enriched sediment microbial communities from oil refinery in Oklahoma, USA. Combined Assembly of Gp0220779, Gp0324998 University of Toronto, Beijing Genomics Institute (BGI) 3300028916 Combined Assembly spades v. 3.12.0 No Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Engineered Artificial ecosystem Contaminated soil Soil microcosm Hydrocarbon anaerobic enrichment culture 360581661 630703 206 4 289 8 0.0 Combined_assembly 3300008951 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Combined Assembly of De NOVO T65 (live) FTP Oil sands Benzoate Gp0125671, Gp0125672, Gp0125716 Shell Corporation 3300008951 Combined Assembly IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 123006042 300451 199 5 355 16 0.0 Combined_assembly 3300003442 *Microbiome Permanent Draft Volcano-associated fumarole microbial communities from Mt. Erebus, Antarctica, that are thermophilic Combined Assembly of Gp0111447, Gp0111475, Gp0111489 University of California, Los Angeles, University of Waikato 3300003442 Combined Assembly Newbler released per JGI data release policy No Yes cherbold@lbl.gov, craig.herbold@microbial-ecology.net Craig Herbold No Environmental Terrestrial Fumaroles Volcanic Unclassified Volcano-associated fumarole sediment 8 39702683 59829 35 0 49 0 0.0 Combined_assembly 3300029305 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goal Fecal Pellet Co-assembly of all three pellet samples and three diluted pellet samples. DOE Joint Genome Institute (JGI) 3300029305 Combined Assembly No Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 10371553782 16595085 11731 49 14457 56 SRX3963493 Unrestricted 0.0 Combined_assembly 3300024346 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Whole water sample coassembly DOE Joint Genome Institute (JGI) 3300024346 Combined Assembly spades v. 3.11.1 Yes Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 2989677775 6545835 1684 420 2584 651 SRX2838000 Unrestricted 0.0 Combined_assembly 3300022231 *Microbiome Permanent Draft Wastewater treatment Accumulibacter community from EBPR bioreactors in Madison, WI Wastewater bacterial communities from lab scale bioreactors performing EBPR in Madison, WI, USA. Combined Assembly of Gp0272283, Gp0272284, Gp0272285 University of Wisconsin, Madison 3300022231 Combined Assembly MetaVelvet v. 1.2.01 released by JGI data releasing policy No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Engineered Bioreactor Marine sediment inoculum Continuous culture Wastewater 138489439 231848 252 22 355 34 0.0 Combined_assembly 3300001097 *Microbiome Permanent Draft Hypersaline microbial communities from Lake Vida, Antarctica Saline microbial communities from Lake Vida, Antarctica (Lake Vida Brine Hole Two - Combined Assembly 2 samples, Mar 2013 Assem) DOE Joint Genome Institute (JGI) 3300001097 Combined Assembly Released by Nikos bc they passed the 6 months embargo date Yes Yes alison@dri.edu Alison Murray No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline 292700959 707118 87 2 168 5 SRX3181484 Unrestricted 0.0 Combined_assembly 3300007212 *Microbiome Permanent Draft Cyanobacterial bloom in Punggol reservoir, Singapore (diel cycle) Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Bottom layer) 7 sequencing projects The Singapore Centre on Environmental Life Sciences Engineering 3300007212 Combined Assembly CLC Genomics Workbench 8 released per JGI data release policy No Yes boonfei@ualberta.ca BOONFEI TAN No Environmental Aquatic Lake Freshwater Cyanobacterial bloom freshwater lake 556669381 715278 63 5 88 10 0.0 Combined_assembly 3300006417 *Microbiome Permanent Draft Enhanced biological phosphorus removal bioreactor microbial communities from the University of Queensland, Australia Combined Assembly of Gp0110018, Gp0110022, Gp0110020 Australian Centre for Ecogenomics, Aalborg University, University of Queensland 3300006417 Combined Assembly CLCBio 6.0 released per Supratim No Yes c.skennerton@gmail.com Connor Skennerton No Engineered Wastewater Biological phosphorus removal Nutrient removal Activated sludge Enhanced biological phosphorus removal bioreactor 2371642897 4976071 599 55 1302 80 SRX404361 0.0 Combined_assembly 3300003642 *Microbiome Permanent Draft Compost microbial communities from Sao Paulo Zoo, Brazil Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 m-RNA DAY 03 (ZC4-mRNA-DAY-03) University of Sao Paulo, Virginia Bioinformatics Institute 3300003642 Combined Assembly released per JGI data release policy No Yes setubal@vbi.vt.edu, joao.c.setubal@gmail.com Joao Setubal Yes 27941956 Engineered Solid waste Composting Zoo waste Unclassified Compost 23922628 56276 29 44 68 125 0.0 Combined_assembly 3300009869 *Microbiome Permanent Draft Cow rumen metatranscriptome Cow rumen microbiome (microbial/fungal) from cows held on UI at Urbana campus farm, Champaign, IL - Corn Stover. Combined Assembly of Gp0148673, Gp0148674 DOE Joint Genome Institute (JGI), U.S. Department of Energy (DOE) 3300009869 Combined Assembly MEGAHIT (version 0.2.0) released per JGI data release policy No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Rumen 1736297801 3845238 342 3579 2002 7629 0.0 Combined_assembly 3300036105 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Doriopsilla Microbiome Co-Assembly DOE Joint Genome Institute (JGI) 3300036105 Combined Assembly spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 1533219 1567 1 0 1 0 Unrestricted 0.0 Combined_assembly 3300033553 *Microbiome Permanent Draft Lost Hammer Sediment microbial community from Lost Hammer Spring, Axel Heiberg Island, Canada. Combined Assembly of Gp0396430, Gp0396438 The Hospital for Sick Children 3300033553 Combined Assembly Megahit v. 1.0.5 released by Elisse Magnuson Yes Yes elisse.magnuson@mail.mcgill.ca Elisse Magnuson No Environmental Aquatic Saline Non-marine Saline and Alkaline Sediment sediment 1599504183 2749248 844 64 1126 94 0.0 Combined_assembly 3300021045 *Microbiome Permanent Draft Methanogenesis in AD Combined Assembly of Gp0220886, Gp0220887, Gp0220889 University of New South Wales 3300021045 Combined Assembly metaSPAdes released by JGI data releasing policy Yes Yes xinzh@env.dtu.dk Xinyu Zhu No Engineered Lab enrichment Anaerobic media Defined media Unclassified Bioreactor liquid 7.5 332642903 528491 330 0 468 1 0.0 Combined_assembly 3300015376 *Microbiome Permanent Draft Cyanobacterial bloom in Punggol reservoir, Singapore (monthly sampling) Combined Assembly of of cyanobacterial bloom in Punggol reservoir, Singapore (monthly sampling, 2015) 8 sequencing projects Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300015376 Combined Assembly CLC GENOMICS WORKBENCH 8.5 released by JGI data releasing policy No Yes boonfei@ualberta.ca BOONFEI TAN No Environmental Aquatic Lake Freshwater Cyanobacterial bloom freshwater lake 687985230 870416 105 13 94 17 0.0 Combined_assembly 3300031521 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden III_Fen_E2 coassembly DOE Joint Genome Institute (JGI) 3300031521 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 4992175589 11175032 3008 324 4900 551 SRX5357440 Unrestricted 0.0 Combined_assembly 3300028842 *Microbiome Permanent Draft Membrane Aerated Biofilm Reactor Sulfur Study Combined Assembly of Gp0304181, Gp0304182 University of Michigan Medical School 3300028842 Combined Assembly MEGAHIT v. 1.1.2 released by JGI data releasing policy Yes Yes nglove@umich.edu Nancy Love No Engineered Bioreactor Unclassified Aerobic Unclassified Biofilm 7.5 897178561 1373198 393 8 564 32 0.0 Combined_assembly 3300034010 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA. Combined Assembly of 8 samples University of Michigan 3300034010 Combined Assembly Megahit v. 1.1.3 IMGSUPP-3397 No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lentic Freshwater Unclassified Freshwater, plankton 1889249747 2699342 326 283 478 421 0.0 Combined_assembly 3300028841 *Microbiome Permanent Draft Membrane Aerated Biofilm Reactor Sulfur Study Combined Assembly of Gp0304196, Gp0304197 University of Michigan Medical School 3300028841 Combined Assembly MEGAHIT v. 1.1.2 released by JGI data releasing policy Yes Yes nglove@umich.edu; jesethdv@umich.edu Nancy Love; Jeseth Delgado Vela No Engineered Bioreactor Unclassified Aerobic Unclassified biofilm 7.7 874151130 1335652 422 31 679 53 0.0 Combined_assembly 3300009005 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom Combined Assembly of De NOVO T14 (live) Tyne Sediment Benzoate Gp0125106, Gp0125107, Gp0125108 Shell Corporation 3300009005 Combined Assembly IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 255846504 825341 245 0 458 0 0.0 Combined_assembly 3300004082 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3 DOE Joint Genome Institute (JGI) 3300004082 Combined Assembly MEGAHIT v. 0.2.0 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 3845585097 11399255 1583 387 2895 1012 SRX2575203 Unrestricted 0.0 Combined_assembly 3300014698 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Mississippi River at Belle Chasse, LA, Winter, 23-Feb-2016, Metagenome, Replicates ABC, Gp0208252, Gp0208253, Gp0208254 University of Oregon 3300014698 Combined Assembly Metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 20883159 81212 31 4 76 8 0.0 Combined_assembly 3300014704 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Mississippi River at Belle Chasse, LA, Spring, 7-Apr-2015, Metagenome, Replicates ABC, Gp0208240, Gp0208241, Gp0208243 University of Oregon 3300014704 Combined Assembly Metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 22931071 91860 45 7 87 11 0.0 Combined_assembly 3300034519 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Dewar Creek hot combined GAL08 CE assembly 1 DOE Joint Genome Institute (JGI) 3300034519 Combined Assembly spades v. 3.13.0 No Yes rstepanauskas@bigelow.org; ruhl.ilona@gmail.com Ramunas Stepanauskas; Ilona Ruhl No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 7.08 1989523 1982 1 0 1 0 SRX2750319 Unrestricted 0.0 Combined_assembly 3300005076 *Microbiome Permanent Draft Activated sludge wastewater microbial communities from Ann Arbor, Michigan, USA Combined Assembly of Gp0111534, Gp0111535, Gp0111536 University of Michigan 3300005076 Combined Assembly IDBA released per JGI data release policy No Yes nglove@umich.edu Nancy Love No Engineered Wastewater Unclassified Activated Sludge Unclassified Wastewater bioreactor 543798130 1111660 435 3 677 2 0.0 Combined_assembly 3300010353 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations AD_USCAca DOE Joint Genome Institute (JGI) 3300010353 Combined Assembly released by Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 3003169550 6064128 1444 24 2454 32 SRX2485723 Unrestricted 0.0 Combined_assembly 3300017593 *Microbiome Permanent Draft Marine sediment microbial communities from ocean floor of Pescadero Basin in Gulf of California Marine sediment microbial communities near hydrothermal vents on the ocean floor of Pescadero Basin in Gulf of California - pushcore 80. Combined Assembly of Gp0212433, Gp0212434, Gp0212435, Gp0212436 Stanford University 3300017593 Combined Assembly SPAdes v10.0; metaSPAdes v10.0; Megahit released by JGI data releasing policy No Yes brian.yu@czbiohub.or Brian Yu No Environmental Aquatic Hydrothermal vents Marine Sediment Marine sediments near hydrothermal vents 752011864 814493 274 2 293 2 0.0 Combined_assembly 3300038994 *Microbiome Finished Deep-sea sponge tissue microbial communities from various sponge species in Cantabrian Sea, Spain Deep-sea sponge tissue microbial communities in Geodia pachydermata from Cantabrian Sea, Spain. Combined Assembly of Gp0459014, Gp0459139, Gp0459138 University of Liverpool 3300038994 Combined Assembly Trinity v. 2.8.4 released by JGI data releasing policy No Yes diezc08@gmail.com Cristina Diez-Vives No Host-associated Porifera Unclassified Sponge Unclassified Deep-sea sponge tissue 397291244 578087 1 1 0 0 0.0 Combined_assembly 3300028901 *Microbiome Permanent Draft Membrane Aerated Biofilm Reactor Sulfur Study Combined Assembly of Gp0304202, Gp0304263 University of Michigan 3300028901 Combined Assembly Megahit v. 1.1.2 released by JGI data releasing policy Yes Yes nglove@umich.edu Nancy Love No Engineered Bioreactor Unclassified Aerobic Unclassified Biofilm 7.7 993202469 1544897 456 28 717 43 0.0 Combined_assembly 3300021595 *Microbiome Permanent Draft Multi-omic termite study Combined Assembly of Gp0264941, Gp0264942, Gp0264943 University of Luxembourg 3300021595 Combined Assembly CLC Genomics Workbench Version 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 211344987 519472 2 1 15 2 0.0 Combined_assembly 3300021423 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Riverine microbial communities from Mississippi River at Belle Chasse, LA, USA . Combined Assembly of 12 SPs University of Oregon 3300021423 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 1655568555 6188904 1532 120 3440 265 0.0 Combined_assembly 3300028902 *Microbiome Permanent Draft Membrane Aerated Biofilm Reactor Sulfur Study Combined Assembly of Gp0304264, Gp0304265 University of Michigan Medical School 3300028902 Combined Assembly Megahit v. 1.1.2 released by JGI data releasing policy Yes Yes nglove@umich.edu Nancy Love No Engineered Bioreactor Unclassified Aerobic Unclassified Biofilm 7.7 1042222854 1607440 453 25 699 47 0.0 Combined_assembly 3300011340 *Microbiome Permanent Draft Microbial community impact on carbon sequestration in managed wetland Carbon farming Combined Assembly of Wetland Metatranscriptomes DOE Joint Genome Institute (JGI) 3300011340 Combined Assembly MEGAHIT v. 1.0.3 No Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Wetland 1991133248 4617525 100590 26345 441308 112566 SRX2553232 Unrestricted 0.0 Combined_assembly 3300009967 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities -laboratory nest Belgium. Combined Assembly of Gp0151224, Gp0151225, Gp0151226, Gp0151227 Luxembourg Institute of Science and Technology 3300009967 Combined Assembly CLC genomics wokrbench 9.0 released per JGI data release policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 215628660 645255 0 0 9 5 0.0 Combined_assembly 3300008989 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Combined Assembly of De NOVO T65 (BES) FTP Oil sands Benzoate Gp0125717, Gp0125718, Gp0125719 Shell Corporation 3300008989 Combined Assembly IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 107833939 304233 125 6 229 20 0.0 Combined_assembly 3300050821 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Co-assembly of Harvard Forest metagenomes from Barre Woods DOE Joint Genome Institute (JGI) 3300050821 Combined Assembly MetaHipMer2 v. 2.0.1.2.523-g6068fea-dirty-master released based on JGI ITS Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 73034096699 126665893 9556 1756 14027 2728 SRX4021888 Unrestricted 0.0 Combined_assembly 3300002835 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605) DOE Joint Genome Institute (JGI) 3300002835 Combined Assembly Released by Nikos bc they passed the 6 months embargo date Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone Freshwater 4236863689 8885607 721 286 1597 582 SRX3310918 Unrestricted 0.0 Combined_assembly 3300008987 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Combined Assembly of De NOVO T34 (live) FTP Oil sands Benzoate Gp0125668, Gp0125720, Gp0125669 Shell Corporation 3300008987 Combined Assembly IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 142506679 360827 164 0 372 3 0.0 Combined_assembly 3300037878 *Microbiome Permanent Draft Lab enriched peat soil microbial communities from two peatlands near Ithaca, NY, United States MHF metagenomes combined assembly DOE Joint Genome Institute (JGI) 3300037878 Combined Assembly metaspades v. 3.13.0 Yes Yes rer26@cornell.edu Ruth Richardson No Environmental Terrestrial Wetlands Soil Peat peat soil 7275120850 11320069 1927 6 3055 5 SRX7542980 Unrestricted 0.0 Combined_assembly 3300020111 *Microbiome Permanent Draft Methanogenesis in AD Bioreactor liquid microbial communities from lab scale biogas reactor, Copenhagen, Denmark. Combined Assembly of 9 SPs University of New South Wales 3300020111 Combined Assembly Metaspades released by JGI data releasing policy Yes Yes xinzh@env.dtu.dk Xinyu Zhu No Engineered Lab enrichment Anaerobic media Defined media Unclassified Bioreactor liquid 7.5 200121955 280464 261 0 302 1 0.0 Combined_assembly 3300005793 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean. Combined Assembly of Gp0107627, Gp0107629, Gp0119879, Gp0119880, Gp0119881, Gp0107619 Marine Biological Laboratory 3300005793 Combined Assembly Ray v. 2.3.1, minimum contig length 1kb released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com; randerson@carleton.edu; elks@mit.edu Caroline Fortunato, Caroline Fortunato; Rika Anderson; Sabrina Elkassas Yes 29205750 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 116800075 155527 10 1 5 1 0.0 Combined_assembly 3300020604 *Microbiome Permanent Draft Sponge Microbiome Project Reference Genomes Sponge tissue associated microbial communities from Hexaddella dedritifera. Combined Assembly of Gp0219500, Gp0220755, Gp0220756, Gp0220758 Woods Hole Oceanographic Institution 3300020604 Combined Assembly IDBAUD released by JGI data releasing policy Yes Yes shan.zhang@student.unsw.edu.au Shan Zhang No Host-associated Porifera Unclassified Sponge Unclassified Sponge tissue 1895275 2099 2 0 1 0 0.0 Combined_assembly 3300069939 *Microbiome Finished Sediment microbial communities from the Saint-Maurice River in Quebec, Canada Combined Assembly of River sediment microbial communities from the Saint-Maurice River near Wemotaci in Quebec, Canada (RDC_10 samples) Genome Quebec 3300069939 Combined Assembly Megahit v. 1.2.7 released by Charlene Lawruk-Desjardins No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Sediment River sediment 0 to .01 14862505031 25982859 3010 168 5546 299 0.0 Combined_assembly 3300023189 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Riverine microbial communities from Yukon River at Pilot Station, AK, USA. Combined Assembly of 8 metaT SPs University of Oregon 3300023189 Combined Assembly rnaspades v. 3.10.1 released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 114632394 424388 34 67 205 606 0.0 Combined_assembly 3300009364 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Combined Assembly of Gp0127940, Gp0127941 Georgia Genomics Facility 3300009364 Combined Assembly IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified water column 688503037 882057 343 1 425 1 0.0 Combined_assembly 3300007171 *Microbiome Permanent Draft Cyanobacterial bloom in Marina Bay freshwater reservoir, Singapore (Diel cycle) Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface layer) 8 sequencing projects The Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300007171 Combined Assembly CLC Genomics Workbench 8 released per JGI data release policy No Yes boonfei@ualberta.ca BOONFEI TAN No Environmental Aquatic Lake Freshwater Cyanobacterial bloom freshwater lake 508209212 718529 83 42 73 39 0.0 Combined_assembly 3300013313 *Microbiome Permanent Draft Marine surface microbial communities from Baltic Sea - BIOACID_cyano Marine surface microbial communities from Baltic Sea. Combined Assembly of 24 SPs re-assembly Berlin Center for Genomics in Biodiversity Research (BeGenDiv) 3300013313 Combined Assembly rna-Spades v3.10 released by JGI data releasing policy No Yes zoccarato@igb-berlin.de Luca Zoccarato No Environmental Aquatic Pelagic Marine Unclassified marine 303279512 1047473 80 18 139 57 0.0 Combined_assembly 3300006674 *Microbiome Permanent Draft Mirobial communities in Biogas reactors Anaerobic microbial community collected from a biogas reactor in Fredrikstad, Norway. Combined Assembly of Gp0117115, Gp0124038 Norwegian Sequencing Centre (NSC) 3300006674 Combined Assembly MiRA v4 released by Live Heldal Hagen No Yes live.hagen@nmbu.no Live Heldal Hagen No Engineered Bioreactor Digestate Anaerobic Unclassified Food waste 407667115 576468 549 0 734 0 0.0 Combined_assembly 3300021193 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Metatranscriptome of riverine microbial communities from Mississippi River at Belle Chasse, LA, USA. Combined Assembly of 12 SPs University of Oregon 3300021193 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 177399226 677342 552 1327 1393 3819 0.0 Combined_assembly 3300040967 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada. Combined Assembly of 18B_56 University of Alberta 3300040967 Combined Assembly megahit v. 1.1.1 released by JGI data releasing policy No Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 337413596 436984 118 9 161 11 0.0 Combined_assembly 3300010232 *Microbiome Permanent Draft Halite endoliths microbial communities diversity study Halite microbial communities from Salar Grande, Atacama Desert, Chile, 2016. Combined Assembly of Gp0154194 and Gp0154467 Johns Hopkins Bayview Research CORES 3300010232 Combined Assembly metaSPAdes released per PI Yes Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero Yes 31273300 Environmental Terrestrial Unclassified Geologic Unclassified evaporite 422160679 516476 88 3 101 1 0.0 Combined_assembly 3300028389 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States ANME aggregate JGI 7061.QLV.BNCT.01.K10_combo DOE Joint Genome Institute (JGI) 3300028389 Combined Assembly metaspades v. 3.11.1 Yes Yes rrmalmstrom@lbl.gov; vorphan@gps.caltech.edu Rex Malmstrom; Victoria Orphan No Environmental Aquatic Marine basin floor Marine Sediment marine sediment 4983159 7790 0 0 0 0 Unrestricted 0.0 Combined_assembly 3300029955 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden II_Bog_E2 coassembly DOE Joint Genome Institute (JGI) 3300029955 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 2833727512 5346750 1133 191 1574 309 SRX5799194 Unrestricted 0.0 Combined_assembly 3300039226 *Microbiome Permanent Draft Colonic mucus bacterial communities from healthy mice in breeding colony, UM, Ann Arbor, Michigan, USA Combined Assembly of Colonic mucus bacterial communities from healthy mice in breeding colony, UM, Ann Arbor, Michigan, USA University of Michigan Medical School, University of Michigan 3300039226 Combined Assembly MEGAHIT v. 1.0.2 released by JGI data releasing policy Yes Yes schmidti@umich.edu Thomas Schmidt No Host-associated Mammals Large intestine Digestive system Unclassified Mouse colonic mucus 2566936694 2917790 240 24 283 89 0.0 Combined_assembly 3300031708 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests FICUS49499 Metagenome Czech Republic combined assembly DOE Joint Genome Institute (JGI) 3300031708 Combined Assembly MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz; kostelecke.uzeniny@seznam.cz Petr Baldrian; Tomas Vetrovsky No Mixed, Environmental Terrestrial Temperate forest Soil Unclassified soil 11822863956 24048879 1861 447 3300 857 SRX4455329 Unrestricted 0.0 Combined_assembly 3300022775 *Microbiome Permanent Draft Metagen_FISABIO_Pilar Fecal bacterial communities from healthy mother-infant pairs in Hospital La Fe, Valencia, Spain. Combined Assembly of 87 SPs Foundation for the Promotion of Health and Biomedical Research (FISABIO), FISABIO Sequencing and Bioinformatics Service 3300022775 Combined Assembly Newbler v. 2.3 released by JGI data releasing policy No Yes rodrigogarlop@gmail.com Rodrigo Garcia No Host-associated Mammals: Human Large intestine Digestive system Fecal Feces 170217323 360718 831 1 1377 3 0.0 Combined_assembly 3300006833 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom Combined Assembly of Gp0125117, Gp0125118, Gp0125119 Shell Corporation 3300006833 Combined Assembly IDBA_UD released per JGI data release policy No Yes tianakorin@googlemail.com, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Tetyana Korin, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 85688123 154028 116 0 174 0 0.0 Combined_assembly 3300030838 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden I_Fen_N1 coassembly DOE Joint Genome Institute (JGI) 3300030838 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 2955819658 7237759 2232 249 3527 388 SRX5799067 Unrestricted 0.0 Combined_assembly 3300005393 *Microbiome Draft Wastewater bioreactor microbial communities from Singapore and Univ of Illinois at Urbana, that are terephthalate-degrading Combined Assembly of (Gp0054472, Gp0054536) Wastewater bioreactor microbial communities from Singapore -Terephthalate degrading community TA Biofilm + TA Sludge, (LANL Assembly) DOE Joint Genome Institute (JGI) 3300005393 Combined Assembly MeGAMerge version 0.9b Released on PI's approval Yes Yes sgtringe@lbl.gov, twoyke@lbl.gov; sgtringe@lbl.gov Susannah Tringe, Tanja Woyke; Susannah Tringe Yes 20686509, 25615435 Engineered Bioremediation Wastewater Terephthalate Unclassified Wastewater bioreactor 824912631 299656 145 2 155 2 0.0 Combined_assembly 3300033063 *Microbiome Permanent Draft Mercury Periphyton Project Periphyton microbial communities from the St. Maurice River, Quebec, Canada. Combined Assembly of Gp0389137, Gp0389138, Gp0389139 Genome Quebec 3300033063 Combined Assembly Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Periphyton Freshwater periphyton 1255303850 2878094 1438 528 2452 935 0.0 Combined_assembly 3300055389 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany BW MetaG CoAssembly DOE Joint Genome Institute (JGI) 3300055389 Combined Assembly MetaHipMer v. 2.1.0.90-g7529d1f-master released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 16517155677 28910778 2206 314 3579 489 Unrestricted 0.0 Combined_assembly 3300009366 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Combined Assembly of Gp0127936, Gp0127937 Georgia Genomics Facility 3300009366 Combined Assembly IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 595976828 761995 296 1 370 0 0.0 Combined_assembly 3300015613 *Microbiome Permanent Draft Cyanobacterial bloom in two Singapore reservoirs in 2015 Cyanobacterial bloom in Kranji reservoir, Singapore (daily sampling, 2015) Combined Assembly of 8 sequencing projects Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300015613 Combined Assembly CLC GENOMICS WORKBENCH 8.5 released by JGI data releasing policy No Yes boonfei@ualberta.ca BOONFEI TAN No Environmental Aquatic Lake Freshwater Cyanobacterial bloom freshwater lake 384893584 485358 68 9 61 13 0.0 Combined_assembly 3300021252 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from nest - French Guiana. Combined Assembly of 14 SPs University of Luxembourg 3300021252 Combined Assembly CLC Genomics Workbench Version 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 503063900 1776596 2 29 29 126 0.0 Combined_assembly 3300028387 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States ANME aggregate JGI 7061.QLV.BNCT.01.D9_combo DOE Joint Genome Institute (JGI) 3300028387 Combined Assembly metaspades v. 3.11.1 Yes Yes rrmalmstrom@lbl.gov; vorphan@gps.caltech.edu Rex Malmstrom; Victoria Orphan No Environmental Aquatic Marine basin floor Marine Sediment marine sediment 4354812 6304 1 0 3 0 Unrestricted 0.0 Combined_assembly 3300015169 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Riverine microbial communities from Altamaha River at Everett City, Summer, Replicates ABC, Gp0208291, Gp0208292, Gp0208293 University of Oregon 3300015169 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 133170864 444228 131 467 353 1476 0.0 Combined_assembly 3300053216 *Microbiome Permanent Draft Soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, under manipulated climate change conditions. Hubbard Brook CCASE Soil Metagenome REF1-6 coassembly DOE Joint Genome Institute (JGI) 3300053216 Combined Assembly MetaHipMer2 v. 2.1.0.90-g7529d1f-master released based on JGI ITS Yes Yes jmtalbot@bu.edu; ptempler@bu.edu Jennifer Bhatnagar; Pamela Templer No Environmental Terrestrial Temperate forest Soil Unclassified Soil 13693337960 24330658 2088 328 3352 487 SRX2838776 Unrestricted 0.0 Combined_assembly 3300009373 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Combined Assembly of Gp0127950, Gp0127951 Georgia Genomics Facility 3300009373 Combined Assembly IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 861546028 1032514 488 4 653 1 0.0 Combined_assembly 3300010885 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling northern Canada Lakes Co-assembly DOE Joint Genome Institute (JGI) 3300010885 Combined Assembly MEGAHIT v. 1.0.6 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 8312491763 10542963 1316 391 1603 256 SRX2954970 Unrestricted 0.0 Combined_assembly 3300016486 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Combined Assembly of Gp0060494, Gp0060379: dna-ANTRC232_01_hybrid_final.fasta J. Craig Venter Institute, J. Craig Venter Institute (JCVI) 3300016486 Combined Assembly Celera WGS Assembler v5.3 Released per Simon Roux. Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater 8.85 85252756 137604 15 0 23 0 0.0 Combined_assembly 3300001687 *Microbiome Permanent Draft Marine sediment microbial communities from White Oak River estuary, North Carolina Deep Marine Sediments WOR-3-8_10 DOE Joint Genome Institute (JGI) 3300001687 Combined Assembly Released by Nikos bc they passed the 6 months embargo date No Yes acidophile@gmail.com Brett Baker No Environmental Aquatic Intertidal zone Marine Estuary: Microbial mat Marine sediment 366573198 386170 36 1 51 0 SRX3317013, SRX3317014 0.0 Combined_assembly 3300020587 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from nest in French Guiana Combined Assembly of 7 SPs University of Luxembourg 3300020587 Combined Assembly CLC Genomics Workbench Version 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 227972663 798176 1 2 11 9 0.0 Combined_assembly 3300008986 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Combined Assembly of De NOVO T34 T0 (live) Oil sands Gp0125713, Gp0125714, Gp0125715 Shell Corporation 3300008986 Combined Assembly IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 129543090 465862 144 4 253 7 0.0 Combined_assembly 3300022548 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Cone Pool_combined assembly DOE Joint Genome Institute (JGI) 3300022548 Combined Assembly Yes Yes rstepanauskas@bigelow.org; jspear@mines.edu; jkjarett@lbl.gov Ramunas Stepanauskas; John Spear; Jessica Jarett No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 8.0825 789511424 1433526 795 5 1161 12 SRX2526462 Unrestricted 0.0 Combined_assembly 3300005264 *Microbiome Permanent Draft Hydrothermal sediment microbial communities from Guaymas Basin, California, USA Hydrothermal sediment microbial communities from Guaymas Basin, California, USA 4572. Combined assembly of Gp0115316 and Gp0146562 University of Texas, Austin 3300005264 Combined Assembly idba released by Kiley Seitz No Yes kws15@utexas.edu Kiley Seitz No Environmental Aquatic Oceanic Marine Sediment Sediment 291954024 312472 34 1 43 1 0.0 Combined_assembly 3300041409 *Microbiome Permanent Draft Forest soil microbial communities from Eldorado National Forest, California, USA SNFC_MG Coassembly DOE Joint Genome Institute (JGI) 3300041409 Combined Assembly HipMer v. 1.2.1.48-gf9765e10 released based on JGI ITS Yes Yes ndove7@gmail.com Nicholas Dove No Environmental Terrestrial Temperate forest Soil Bulk soil soil 12422238583 22512593 1110 395 1859 581 SRX8239470 Unrestricted 0.0 Combined_assembly 3300006217 *Microbiome Permanent Draft Intestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA Combined Assembly of all intestinal viral_metagenomes from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA University of Texas Southwestern Medical Center 3300006217 Combined Assembly SPAdes 3.1.0 released per JGI data release policy No Yes breck.duerkop@utsouthwestern.edu, breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal mouse feces 791632371 1055047 596 0 534 0 0.0 Combined_assembly 3300045988 *Microbiome Permanent Draft Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome Combined Assembly of pooled viral contigs from multiple samples University of Glasgow, Broad Institute 3300045988 Combined Assembly MEGAHIT&MetaSPAdes v. N/A1 No Yes nckyrpides@lbl.gov Nikos Kyrpides No Host-associated Mammals: Human Large intestine Digestive system Fecal Fecal 8803222510 12458808 72 0 187 0 ERX1841129 0.0 Combined_assembly 3300007030 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Combined Assembly of Gp0125717, Gp0125718, Gp0125719 Shell Corporation 3300007030 Combined Assembly IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 63083031 98389 66 3 118 5 0.0 Combined_assembly 3300008084 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada T0 T34 (live) enrichments of Methanogenic microbial communities using Athabasca oil sands. Combined Assembly of Gp0125713, Gp0125714, Gp0125715 (Resub refer gen) Shell Corporation 3300008084 Combined Assembly IDBA_UD released per JGI data release policy No Yes ian.head@newcastle.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 300353112 1239279 769 10 1164 14 0.0 Combined_assembly 3300040964 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada. Combined Assembly of 18A_2ab 5SPs University of Alberta 3300040964 Combined Assembly megahit v. 1.1.1 released by JGI data releasing policy No Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 249937716 322473 90 7 124 11 0.0 Combined_assembly 3300028296 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Combined Assembly of Gp0060490, Gp0060398 - Site 227 with 0.1UM filter - spades J. Craig Venter Institute, J. Craig Venter Institute (JCVI) 3300028296 Combined Assembly Spades v. 3.11.1 Released per Simon Roux. Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater 6.94 26024886 62959 12 0 24 0 0.0 Combined_assembly 3300020225 *Microbiome Permanent Draft Coral tissue associated microbial communities from Acropora gemmifera, Ofu, American Samoa Coral tissue associated microbial communities from Acropora gemmifera, Ofu, American Samoa. Combined Assembly of 34 SPs Stanford University 3300020225 Combined Assembly metaSPAdes v3.10 released by JGI data releasing policy No Yes brian.yu@czbiohub.or Brian Yu No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral tissue 37421645 36964 0 1 0 1 0.0 Combined_assembly 3300001677 *Microbiome Permanent Draft Black band diseased coral microbial communities from the Florida Keys, USA Geitlerinema_BBD_1991 (Combined data, binned.) University of Michigan 3300001677 Combined Assembly released per PI's request No Yes gdick@umich.edu Gregory Dick No Host-associated Invertebrates Unclassified Cnidaria Unclassified Black band diseased coral 61884034 57157 6 0 6 0 0.0 Combined_assembly 3300023186 *Microbiome Permanent Draft Multi-omic termite study Combined Assembly of Gp0236380, Gp0236379, Gp0236378 Luxembourg Institute of Science and Technology, University of Luxembourg 3300023186 Combined Assembly CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 161280795 247647 5 1 8 2 0.0 Combined_assembly 3300009966 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities. Combined Assembly of Gp0151149, Gp0151152, Gp0151222, Gp0151223 University of Luxembourg, Luxembourg Institute of Science and Technology 3300009966 Combined Assembly CLC genomics wokrbench 9.0 released per JGI data release policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 213988362 589342 0 9 5 28 0.0 Combined_assembly 3300002068 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Barrow Graham LP Ref core NGADG0004-212 (Barrow Graham LP Ref core NGADG0004-212,NGADG0011-311, ASSEMBLY_DATE=20131010) DOE Joint Genome Institute (JGI) 3300002068 Combined Assembly Released by Nikos bc they passed the 6 months embargo date Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 646179150 1460113 566 5 956 6 SRX1990903 0.0 Combined_assembly 3300008984 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom Combined Assembly of De NOVO T5 (BES) Tyne Sediment Benzoate Gp0125114, Gp0125115, Gp0125116 Shell Corporation 3300008984 Combined Assembly IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl .ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 187083390 640166 490 2 1283 15 0.0 Combined_assembly 3300028386 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States ANME aggregate JGI 7061.QLV.BNCT.01.G4_combo DOE Joint Genome Institute (JGI) 3300028386 Combined Assembly metaspades v. 3.11.1 Yes Yes rrmalmstrom@lbl.gov; vorphan@gps.caltech.edu Rex Malmstrom; Victoria Orphan No Environmental Aquatic Marine basin floor Marine Sediment marine sediment 3530115 5010 4 0 3 0 Unrestricted 0.0 Combined_assembly 3300017534 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Organic Lake, Antarctica - Combined Assembly of Gp0060414, Gp0060495: dna-ANTRC233_01_hybrid_final.fasta J. Craig Venter Institute, J. Craig Venter Institute (JCVI) 3300017534 Combined Assembly Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli Yes 21124488 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake 8636023 20026 8 0 19 1 0.0 Combined_assembly 3300050517 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Montane Cordillera Ecozone, Canada. Combined Assembly of 30 SPs Genome Quebec 3300050517 Combined Assembly Megahit v. 1.2.7. released by Vera Onana Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 10786473168 18255182 1917 685 3230 989 0.0 Combined_assembly 3300022552 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Guaymas_combined assembly DOE Joint Genome Institute (JGI) 3300022552 Combined Assembly Yes Yes rstepanauskas@bigelow.org; teske@email.unc.edu Ramunas Stepanauskas; Andreas Teske No Environmental Aquatic Hydrothermal vents Marine Sediment Marine hydrothermal vent 1449441318 3225064 1357 14 2319 26 SRX2525187 Unrestricted 0.0 Combined_assembly 3300022551 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Boni_combined assembly DOE Joint Genome Institute (JGI) 3300022551 Combined Assembly Yes Yes rstepanauskas@bigelow.org; aurele.vuillemin@gfz-potsdam.de Ramunas Stepanauskas; Aurele Vuillemin No Environmental Aquatic Lake Freshwater Sediment Lake sediment 7.2-7.4 1144231115 2418056 853 5 1613 9 SRX3007310 Unrestricted 0.0 Combined_assembly 3300051636 *Microbiome Permanent Draft Sediment community from Gypsum Hill Spring, Axel Heiberg Island, Canada Combined Assembly of Sediment microbial communities from Gypsum Hill Spring, Axel Heiberg Island, Canada McGill University 3300051636 Combined Assembly Megahit v. 1.2.9 released by Elisse Magnuson Yes Yes elisse.magnuson@mail.mcgill.ca Elisse Magnuson No Environmental Aquatic Hypersaline, Unclassified Non-marine Saline and Alkaline, Sediment Sediment, Unclassified sediment 425453429 548496 261 6 344 7 0.0 Combined_assembly 3300005093 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks DOE Joint Genome Institute (JGI) 3300005093 Combined Assembly MEGAHIT v. 0.2.0 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 9023046881 27725590 3185 163 6893 419 SRX1991291 Unrestricted 0.0 Combined_assembly 3300009367 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Combined Assembly of Gp0127932, Gp0127933 Georgia Genomics Facility 3300009367 Combined Assembly IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 821291623 1073233 387 1 522 4 0.0 Combined_assembly 3300014756 *Microbiome Permanent Draft Multi-omic termite study Combined Assembly of Gp0195599, Gp0195600, Gp0195601 Luxembourg Institute of Science and Technology 3300014756 Combined Assembly CLC genomics wokrbench 9.0 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 97263593 135337 1 1 7 1 0.0 Combined_assembly 3300039227 *Microbiome Permanent Draft Anaerobic medium chain fatty acid producing microbiome derived from acid-phase wastewater digester, single carbon source - xylose Combined Assembly of Xylose enriched microbial communities from anaerobic bioreactor in Madison, Wisconsin, United States DOE Joint Genome Institute (JGI), University of Wisconsin, Madison 3300039227 Combined Assembly metaSPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes noguera@engr.wisc.edu Daniel Noguera Yes 35343806 Engineered Bioreactor Unclassified Anaerobic Unclassified Xylose enrichment biomass 85054129 85356 21 3 56 2 SRX5337696, SRX5337697 0.0 Combined_assembly 3300009369 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Combined Assembly of Gp0127945, Gp0127946 Georgia Genomics Facility 3300009369 Combined Assembly IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 1733215808 2281540 780 47 915 47 0.0 Combined_assembly 3300028429 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA. Combined Assembly of Gp0114690, Gp0264949 University of Michigan 3300028429 Combined Assembly Megahit v. 1.1.2 IMGSUPP-3397 No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lentic Freshwater Unclassified Freshwater, plankton 590240386 969625 168 90 245 160 0.0 Combined_assembly 3300015166 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Riverine microbial communities from St. Lawrence River near Massena, NY, USA, metaT, Fall, Replicates ABC, Gp0208282, Gp0208283, Gp0208284 University of Oregon 3300015166 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 124552648 413838 205 531 416 1271 0.0 Combined_assembly 3300017791 *Microbiome Permanent Draft Microbial metagenomes of rhizospheric soil samples from Willow field trial in the northeast United States Shrub willow rhizosphere microbial communities from Mylan Park field trial, Morgen Town, WV, USA. Combined Assembly of 8 sequencing projects Pennsylvania State University (USA) 3300017791 Combined Assembly MetaHit released by JGI data releasing policy No Yes jec16@psu.edu John Carlson No Host-associated Plants Rhizosphere Roots Soil rhizosphere 1146820136 1576795 300 43 391 56 0.0 Combined_assembly 3300047518 *Microbiome Permanent Draft Sediment microcosms microbial communities from Lake Michigan coastal wetlands, St. Ignace, MI, USA Combined Assembly of Sediment microcosms microbial communities from Lake Michigan coastal wetlands, St. Ignace, MI, USA; experimental crude and fertilizer Michigan State University 3300047518 Combined Assembly MEGAHIT v. 1.1.2 released per PI -- IMGSUPP-4295 No Yes deric.learman@cmich.edu Deric Learman No Engineered Artificial ecosystem Wetland sediment Sediment microcosm Unclassified sediment microcosm 0 to .3 3050909769 5258773 1283 92 2183 150 0.0 Combined_assembly 3300028948 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Seasonal metagenomes from Altamaha River University of Oregon 3300028948 Combined Assembly metaspades v. 3.11.0 released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 2329927466 6632563 1520 190 2971 401 0.0 Combined_assembly 3300029883 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden I_Bog_E2 coassembly DOE Joint Genome Institute (JGI) 3300029883 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 1829361357 3745515 787 147 1263 214 SRX5355600 Unrestricted 0.0 Combined_assembly 3300060347 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany BW MetaT CoAssembly DOE Joint Genome Institute (JGI) 3300060347 Combined Assembly MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 533724854 984391 649 430 3531 1849 Unrestricted 0.0 Combined_assembly 3300029945 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden I_Bog_N2 coassembly DOE Joint Genome Institute (JGI) 3300029945 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 2831971889 5698185 1009 171 1561 255 SRX5281090 Unrestricted 0.0 Combined_assembly 3300033752 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States WT metagenomes combined assembly DOE Joint Genome Institute (JGI) 3300033752 Combined Assembly metaspades v. 3.13.0 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 438838924 591935 468 4 568 5 SRX7519114 Unrestricted 0.0 Combined_assembly 3300014569 *Microbiome Finished Riverine microbial communities from big rivers of the USA Combined Assembly of Columbia River near Beaver Army Terminal, OR, Spring, 20-May-2015, Metagenome, Replicates ABC, Gp0208170, Gp0208171, Gp0208172 University of Oregon 3300014569 Combined Assembly Metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton river 25197770 95449 28 11 79 19 0.0 Combined_assembly 3300030738 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly DOE Joint Genome Institute (JGI) 3300030738 Combined Assembly MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 3531420091 7425118 447 377 4838 2046 SRX4011339 Unrestricted 0.0 Combined_assembly 3300029799 *Microbiome Permanent Draft Metagenomes from anaerobic digester of solid waste Metagenomes from anaerobic digester of solid waste, Toronto, Canda. Combined Assembly of Gp0238878, Gp0238879, Gp0242100, Gp0242119 University of Toronto 3300029799 Combined Assembly megahit v. 1.1.1 No Yes elizabeth.edwards@utoronto.ca; camillaln@gmail.com Elizabeth A. Edwards; Camilla Nesb? No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic digester digestate 4319522422 7926501 1758 287 2867 396 0.0 Combined_assembly 3300029287 *Microbiome Finished Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Sorghum rhizosphere and soil microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA. Combined Assembly of 23 SPs QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300029287 Combined Assembly MEGAHIT v. 1.1.2 released per submitter -- IMGSUPP-3111 No Yes hwipf@berkeley.edu; colemanderr@gmail.com Edi Wipf; Devin Coleman-Derr No Mixed, Host-associated Plants Rhizosphere Roots Unclassified sorghum rhizosphere 437059408 889428 2685 4575 12724 14688 0.0 Combined_assembly 3300015074 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Riverine microbial communities from Yukon River at Pilot Station, AK, USA , metaT, Winter, Replicates ABC, Gp0208273, Gp0208274, Gp0208275 University of Oregon 3300015074 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 51327440 176111 250 129 600 361 0.0 Combined_assembly 3300045909 *Microbiome Permanent Draft Metagenomes from anaerobic digester of solid waste Leachate microbial community from anaerobic digester in University of Toronto, Ontario, Canada. Combined Assembly of Gp0569516, Gp0569515 Genome Quebec 3300045909 Combined Assembly Spades v. 3.14.1 released by Camilla Nesbo Yes Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Engineered Bioreactor Leachate Anaerobic Unclassified leachate 456550710 725074 143 4 266 3 0.0 Combined_assembly 3300021189 *Microbiome Permanent Draft Metagenomes from benzene-degrading nitrate-reducing cultures Lab enriched sediment microbial communities from hydrocarbon-contaminated retail site, Toronto, Canada. Combined Assembly of 5 SPs Genome Quebec 3300021189 Combined Assembly megahit released per submitter Yes Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Engineered Lab enrichment Anaerobic media Defined media Unclassified enriched sediment 350133947 485354 181 1 235 0 0.0 Combined_assembly 3300030007 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden I_Palsa_E1 coassembly DOE Joint Genome Institute (JGI) 3300030007 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 4098486570 8056979 1187 185 1904 295 SRX5799066 Unrestricted 0.0 Combined_assembly 3300033802 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States P4+WT+SM metagenomes combined assembly DOE Joint Genome Institute (JGI) 3300033802 Combined Assembly metaspades v. 3.13.0 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass growth medium 508512870 684604 583 3 709 3 SRX5660656 Unrestricted 0.0 Combined_assembly 3300004480 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4 DOE Joint Genome Institute (JGI) 3300004480 Combined Assembly SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 6760133627 20156018 2644 75 5946 185 SRX1990511 Unrestricted 0.0 Combined_assembly 3300014981 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Riverine microbial communities from Yukon River at Pilot Station, AK, USA, metaT, Fall, Replicates ABC, Gp0208270, Gp0208271, Gp0208272 University of Oregon 3300014981 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 2945321 11165 29 51 56 236 0.0 Combined_assembly 3300004635 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3 DOE Joint Genome Institute (JGI) 3300004635 Combined Assembly MEGAHIT v. 0.2.0 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 7324541563 21287666 2277 536 4121 1470 SRX2575203 Unrestricted 0.0 Combined_assembly 3300023217 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Riverine microbial communities from Columbia River near Beaver Army Terminal, OR, USA. Combined Assembly of 12 metaT SPs University of Oregon 3300023217 Combined Assembly rnaspades v. 3.10.1 released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton Freshwater 971059414 3295280 253 661 1016 2941 0.0 Combined_assembly 3300023300 *Microbiome Permanent Draft Metagenomes from anaerobic digester of solid waste Food waste microbial community from Durham, Ontario, Canada. Combined Assembly of Gp0238881, Gp0242100 University of Toronto 3300023300 Combined Assembly megahit v. 1.1.1 No Yes elizabeth.edwards@utoronto.ca Elizabeth A. Edwards No Engineered Solid waste Unclassified Food waste Unclassified food waste 2058790328 3392846 569 265 941 390 SRX4986161, SRX4965146 0.0 Combined_assembly 3300012212 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA Combined assembly of Hopland grassland soil DOE Joint Genome Institute (JGI) 3300012212 Combined Assembly MEGAHIT v. 1.0.6 No Yes nuccio1@llnl.gov; pettridge2@llnl.gov Erin Nuccio; Jennifer Pett-Ridge No Mixed, Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 12333660947 28576574 138722 37362 324157 140376 SRX2562473 Unrestricted 0.0 Combined_assembly 3300028919 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of StLawrence River assembly metatranscriptomes University of Oregon 3300028919 Combined Assembly rnaspades v. 3.10.1 released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 477151334 1636004 87 374 273 2066 0.0 Combined_assembly 3300026556 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from nests in French Guiana. Combined Assembly of of 14 metaT SPs University of Luxembourg 3300026556 Combined Assembly CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 547978381 1936232 2 32 34 136 0.0 Combined_assembly 3300029913 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden III_Bog_N3 coassembly DOE Joint Genome Institute (JGI) 3300029913 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 2945007267 4878358 911 149 1259 227 SRX5356897 Unrestricted 0.0 Combined_assembly 3300010385 *Microbiome Permanent Draft Giant kelp blades associated microbial communities from the kelp forest near Monterey Bay Aquarium, California, USA Giant kelp blades associated microbial communities from the kelp forest near Monterey Bay Aquarium, California, USA . Combined Assembly of Gp0155292, Gp0155293 Leibniz Institute 3300010385 Combined Assembly IDBA_UD v.1.1.1 released per submitter's request Yes Yes aka14@dsmz.de; john.vollmers@kit.edu Anne Kaster; John Vollmers No Host-associated Algae Unclassified Brown Algae Unclassified marine brown algae (kelp) associated 413904141 511440 369 2 397 2 0.0 Combined_assembly 3300028499 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Seasonal ROMEO metatranscriptomes 57 SPs University of Oregon 3300028499 Combined Assembly rnaspades v. 3.10.1 released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton Freshwater 2095203801 7304069 430 1607 1794 9074 0.0 Combined_assembly 3300010392 *Microbiome Permanent Draft Coastal sediment microbial communities from Rhode Island, USA Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385 JGI facility at Oak Ridge National Laboratory, Brown University 3300010392 Combined Assembly megahit released per JGI data release policy No Yes zhang.cme@gmail.com Ying Zhang No Environmental Aquatic Coastal Marine Sediment Marine 11386298778 22410958 9688 263 15188 441 0.0 Combined_assembly 3300024349 *Microbiome Permanent Draft Membrane Aerated Biofilm Reactor Sulfur Study Combined Assembly of Biofilm Sample Day 565 Gp0304181, Gp0304182 University of Michigan Medical School 3300024349 Combined Assembly MEGAHIT v. 1.1.2 released by JGI data releasing policy Yes Yes nglove@umich.edu Nancy Love No Engineered Bioreactor Unclassified Aerobic Unclassified Biofilm 7.5 910223851 1494606 492 11 795 37 0.0 Combined_assembly 3300010391 *Microbiome Permanent Draft Lake Superior Sediments Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406 University of Minnesota - Twin Cities 3300010391 Combined Assembly MegaHit v1.0.6 released per JGI data release policy No Yes cssheik@d.umn.edu Cody Sheik No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 2304350106 5174401 1310 7 2361 11 0.0 Combined_assembly 3300026617 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of 5 seasonal ROMEO rivers University of Oregon 3300026617 Combined Assembly rnaspades v. 3.10.1 released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton Freshwater 2095203801 7304069 430 1607 1794 9074 0.0 Combined_assembly 3300022563 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) OV2_combined assembly DOE Joint Genome Institute (JGI) 3300022563 Combined Assembly Yes Yes rstepanauskas@bigelow.org; duane.moser@dri.edu Ramunas Stepanauskas; Duane Moser No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Thermal springs 2030948157 4932388 2221 49 3894 115 SRX2948733 Unrestricted 0.0 Combined_assembly 3300030020 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden II_Bog_N1 coassembly DOE Joint Genome Institute (JGI) 3300030020 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 2979611740 5529024 941 209 1342 331 SRX5799207 Unrestricted 0.0 Combined_assembly 3300040800 *Microbiome Draft Bangladesh Groundwater Combined Assembly of Groundwater microbial communities from Pleistocene aquifer in Araihazar, Bangladesh Columbia University, University of Manchester 3300040800 Combined Assembly Megahit v. 1.2 released by JGI data releasing policy No Yes bmaillou@barnard.edu Brian Mailloux No Environmental Aquatic Groundwater Freshwater Unclassified groundwater 243.84 1317533559 2214347 665 11 1028 20 0.0 Combined_assembly 3300032031 *Microbiome Permanent Draft Human skin microbial communities from scalp of adult individual in Cincinnati, Ohio, United States Human skin microbial communities from scalp of adult individual in Cincinnati, Ohio, United States. Combined Assembly of 80 SPs Procter and Gamble 3300032031 Combined Assembly Megahit v. 1.1.3 released by JGI data releasing policy Yes Yes heinro@umich.edu Robert Hein No Host-associated Mammals: Human Skin Integumentary system Unclassified skin 2988295370 3121413 209 80 269 77 0.0 Combined_assembly 3300023193 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Riverine microbial communities from Mississippi River at Belle Chasse, LA, USA. Combined Assembly of 12 metaT SPs University of Oregon 3300023193 Combined Assembly rnaspades v. 3.10.1 released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 154500857 596564 29 280 186 1812 0.0 Combined_assembly 3300015205 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Riverine microbial communities from Altamaha River at Everett City, Spring, Replicates ABC, Gp0208288, Gp0208289, Gp0208290 University of Oregon 3300015205 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 186237357 654192 116 808 313 2864 0.0 Combined_assembly 3300061150 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Combined Assembly of surface microbial communities from International Space Station, Mission 2 samples, untreated Jet Propulsion Laboratory, California Institute of Technology 3300061150 Combined Assembly Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 327723825 868012 100 21 155 41 SRX2249351, SRX2249348, SRX3808517, SRX3808506 0.0 Combined_assembly 3300018936 *Microbiome Permanent Draft Black Band Disease transitions Microbial communities of stony corals with Black-band disease (BBD) from Carrie Bow Cay Field Station, Belize; BBD Transitions coral #3. Combined Assembly of Gp0151269, Gp0151270, Gp0151271 University of Maryland 3300018936 Combined Assembly IDBA-Tran v1.1.1 released by JGI data releasing policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified marine 467514097 906503 25 21 150 78 0.0 Combined_assembly 3300009408 *Microbiome Permanent Draft Marine microbial mats from Loihi Seamount, Hawaii, USA Marine microbial mats from Loihi Seamount, Hawaii, USA. Combined Assembly of Gp0139187, Gp0139188, Gp0139189, Gp0139190, Gp0139191, Gp0139192 Oregon Health and Science University (OHSU), Western Washington University 3300009408 Combined Assembly IDBA-UD v1.1.1 released per PI No Yes heather.fullerton@wwu.edu, hfullerton@gmail.com; cmoyer@hydro.biol.wwu.edu; mcallis@uw.edu Heather Fullerton, Heather Fullerton; Craig Moyer; Sean McAllister No Environmental Aquatic Hydrothermal vents Marine Microbial mats Marine 289114522 406712 249 3 384 5 0.0 Combined_assembly 3300001867 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705) DOE Joint Genome Institute (JGI) 3300001867 Combined Assembly Released by Nikos bc they passed the 6 months embargo date Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 1152275568 3091078 2246 574 3937 1116 SRX3311920 0.0 Combined_assembly 3300014812 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Mississippi River at Belle Chasse, LA, Fall, 8-Dec-2015, Metagenome, Replicates ABC, Gp0208249, Gp0208250, Gp0208251 University of Oregon 3300014812 Combined Assembly Metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 87354270 320040 202 15 338 34 0.0 Combined_assembly 3300007970 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada T0 T34 (live) enrichments of Methanogenic microbial communities using Athabasca oil sands. Combined Assembly of Gp0125713, Gp0125714, Gp0125715 (Resub De NOVO) Shell Corporation 3300007970 Combined Assembly IDBA_UD released per JGI data release policy No Yes ian.head@newcastle.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 341422206 1460541 1189 9 1911 15 0.0 Combined_assembly 3300005515 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Combined assembly of arab plate scrape MF_Cvi (Combined Assembly) DOE Joint Genome Institute (JGI) 3300005515 Combined Assembly MEGAHIT v. 0.2.0 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 2131587156 4460455 272 6 1669 16 SRX1991090 Unrestricted 0.0 Combined_assembly 3300037849 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests FICUS49499 Metatranscriptome Norway combined assembly DOE Joint Genome Institute (JGI) 3300037849 Combined Assembly Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Mixed, Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 5659788480 9861129 2100 894 6276 3972 SRX5351257 Unrestricted 0.0 Combined_assembly 3300016648 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Combined Assembly of Gp0060441, Gp0060376: dna-ANTRC229_01_hybrid_final.fasta J. Craig Venter Institute, J. Craig Venter Institute (JCVI) 3300016648 Combined Assembly Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater 7.81 20904861 55194 42 1 93 0 0.0 Combined_assembly 3300014825 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Altamaha River at Everett City, GA, Winter, 3-Feb-2016, Metagenome, Replicates ABC, Gp0208233, Gp0208235, Gp0208237 University of Oregon 3300014825 Combined Assembly Metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 196950817 655460 163 15 342 25 0.0 Combined_assembly 3300061153 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Combined Assembly of surface microbial communities from International Space Station, Mission 3 samples, PMA-treated Jet Propulsion Laboratory, California Institute of Technology 3300061153 Combined Assembly Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 31461795 100843 6 0 19 5 SRX3244875, SRX3808509, SRX3244864, SRX3808529 0.0 Combined_assembly 3300022544 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Jinze_combined assembly DOE Joint Genome Institute (JGI) 3300022544 Combined Assembly Yes Yes brian.hedlund@unlv.edu; rstepanauskas@bigelow.org Brian Hedlund; Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring 6.65 201359288 300544 180 1 221 1 SRX2753919 Unrestricted 0.0 Combined_assembly 3300007216 *Microbiome Permanent Draft Cyanobacterial bloom in Punggol reservoir, Singapore (diel cycle) Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface and Bottom layer) 16 sequencing projects The Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300007216 Combined Assembly CLC Genomics Workbench 8 released per JGI data release policy No Yes boonfei@ualberta.ca BOONFEI TAN No Environmental Aquatic Lake Freshwater Cyanobacterial bloom freshwater lake 1110120377 1415231 116 12 128 14 0.0 Combined_assembly 3300014817 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Yukon River at Pilot Station, AK, Winter, 5-Apr-2016, Metagenome, Replicates ABC, Gp0208200, Gp0208201, Gp0208203 University of Oregon 3300014817 Combined Assembly Metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 108667630 376607 127 10 288 22 0.0 Combined_assembly 3300028430 *Microbiome Permanent Draft Harmful Algal Blooms in Lake Erie Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA. Combined Assembly of 8 SPs University of Michigan 3300028430 Combined Assembly Megahit v. 1.1.2 IMGSUPP-3397 No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Lentic Freshwater Unclassified Freshwater, plankton 3021941723 4149399 346 247 461 356 0.0 Combined_assembly 3300002066 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Barrow Graham LP Ref core NGADG0002-211 (Barrow Graham LP Ref core NGADG0002-211,NGADG0004-311, ASSEMBLY_DATE=20131004) DOE Joint Genome Institute (JGI) 3300002066 Combined Assembly Released by Nikos bc they passed the 6 months embargo date Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 440192429 1019161 371 5 757 8 SRX1990803 0.0 Combined_assembly 3300006654 *Microbiome Permanent Draft Deep marine subsurface microbial communities from Mid-Atlantic Ridge (IODP Expedition 336) Combined Assembly of bottom water samples from the Mid-Atlantic Ridge North Pond Expedition The Marine Biological Laboratory 3300006654 Combined Assembly IDBA-UD v.1.1.1; Geneious Assembler v.6.1.8 Released bc the datasets have been published No Yes jhuber@mbl.edu, tully.bj@gmail.com; jhuber@whoi.edu Huber, Benjamin Tully; Julie Huber Yes 26935537 Environmental Aquatic Oceanic Marine Abyssal plane marine 143505410 160439 57 4 64 1 0.0 Combined_assembly 3300067034 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Combined Assembly of Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada Microbiome Insights 3300067034 Combined Assembly megahit v. 1.2.9 No Yes camillaln@gmail.com; lanoil@ualberta.ca Camilla Nesb?; Brian Lanoil No Environmental Terrestrial Agricultural land, Unclassified Soil Unclassified agricultural soil 0 to .15 8011915735 10759975 1232 122 1270 141 0.0 Combined_assembly 3300022755 *Microbiome Permanent Draft Metagen_FISABIO_Pilar Fecal microbial communities from healthy mother-infant pairs in Hospital La Fe, Valencia, Spain. Combined Assembly of 39 SPs Foundation for the Promotion of Health and Biomedical Research (FISABIO), FISABIO Sequencing and Bioinformatics Service 3300022755 Combined Assembly SPAdes v. 3.9 released by JGI data releasing policy No Yes rodrigogarlop@gmail.com Rodrigo Garcia No Host-associated Mammals: Human Large intestine Digestive system Fecal Feces 1979133 5242 1468 66 1677 102 0.0 Combined_assembly 3300029910 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden III_Palsa_E2 coassembly DOE Joint Genome Institute (JGI) 3300029910 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 2854786806 5423131 1017 184 1520 296 SRX5357475 Unrestricted 0.0 Combined_assembly 3300050340 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Taiga Plains ecozone, Canada. Combined Assembly of 25 SPs Genome Quebec 3300050340 Combined Assembly Megahit v. 1.2.7. released by Vera Onana Yes Yes vera.onana@mail.concordia.ca; david.walsh@concordia.ca Vera Onana; David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 10045541732 17259483 2200 643 3687 1004 0.0 Combined_assembly 3300015372 *Microbiome Draft Arabidopsis rhizosphere microbial communities from the University of North Carolina Soil combined assembly DOE Joint Genome Institute (JGI) 3300015372 Combined Assembly MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov; dangl@email.unc.edu Susannah Tringe; Jeff Dangl Yes 22859206 Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 6051548737 13678373 3521 63 6125 113 Unrestricted 0.0 Combined_assembly 3300015371 *Microbiome Permanent Draft Arabidopsis rhizosphere microbial communities from the University of North Carolina Combined assembly of cpr5 and col0 rhizosphere and soil DOE Joint Genome Institute (JGI) 3300015371 Combined Assembly MEGAHIT v. 1.0.6 Yes Yes sgtringe@lbl.gov; dangl@email.unc.edu Susannah Tringe; Jeff Dangl Yes 22859206 Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 8273539931 10982619 1222 53 1138 53 Unrestricted 0.0 Combined_assembly 3300018491 *Microbiome Permanent Draft Black Band Disease transitions Microbial communities of stony corals with Black-band disease (BBD) from Carrie Bow Cay Field Station, Belize; BBD Transitions coral #2. Combined Assembly of Gp0151263, Gp0151264, Gp0151265 University of Maryland 3300018491 Combined Assembly IDBA-Tran v1.1.1 released by JGI data releasing policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified marine 287777035 462355 57 18 355 124 0.0 Combined_assembly 3300002899 *Microbiome Permanent Draft Soil microbial communities from Kansas (Konza Prairie Natural Area and Manhattan, Kansas, USA) Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607) DOE Joint Genome Institute (JGI) 3300002899 Combined Assembly SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 revert back to private per Christa Yes Yes sgtringe@lbl.gov, ELBrodie@lbl.gov Susannah Tringe, Eoin Brodie No Environmental Terrestrial Unclassified Soil Unclassified Soil 461967187 1404934 614 28 1368 50 Unrestricted 0.0 Combined_assembly 3300040968 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada. Combined Assembly of 18A_1ab 5SPs University of Alberta 3300040968 Combined Assembly megahit v. 1.1.1 released by JGI data releasing policy No Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified waste water 254038722 319532 123 4 148 5 0.0 Combined_assembly 3300032167 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Three Goat Fecal Pellets DOE Joint Genome Institute (JGI) 3300032167 Combined Assembly spades v. 3.11.1 Yes Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal Goat feces 6527832393 10506968 7830 36 9687 35 SRX3963493 Unrestricted 0.0 Combined_assembly 3300014834 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Altamaha River at Everett City, GA, USA, Summer, Metagenome, Replicates ABC, Gp0208224, Gp0208226, Gp0208228 University of Oregon 3300014834 Combined Assembly Metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 398841426 1200038 380 42 596 96 0.0 Combined_assembly 3300016457 *Microbiome Permanent Draft Marine sediment microbial communities from ocean floor of Pescadero Basin in Gulf of California Marine sediment microbial communities near hydrothermal vents on the ocean floor of Pescadero Basin in Gulf of California. Combined Assembly of Gp0212427, Gp0212428, Gp0212429, Gp0212430 Stanford University 3300016457 Combined Assembly SPAdes v10.0; metaSPAdes v10.0; Megahit released by JGI data releasing policy No Yes brian.yu@czbiohub.or Brian Yu No Environmental Aquatic Hydrothermal vents Marine Sediment Marine sediments near hydrothermal vents 784989511 824823 261 1 279 0 0.0 Combined_assembly 3300001791 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA floor swab of gowning area - replicate A (NASA floor swab of gowning area (6 samples), ASSEMBLY_DATE=20130911) DOE Joint Genome Institute (JGI) 3300001791 Combined Assembly Released by Nikos bc they passed the 6 months embargo date Yes Yes nnivanova@lbl.gov, NNIvanova@lbl.gov Natasha Ivanova, Natalia Ivanova No Engineered Built environment Gowning room Spacecraft Assembly Cleanrooms Floor Clean room 28776957 73195 8 0 9 5 0.0 Combined_assembly 3300010883 *Microbiome Permanent Draft Marine microbial communities from western Arctic Ocean western Arctic Ocean co-assembly DOE Joint Genome Institute (JGI) 3300010883 Combined Assembly MEGAHIT v. 1.0.6 Yes Yes david.walsh@concordia.ca David Walsh Yes 30271971 Environmental Aquatic Oceanic Marine Unclassified Marine 5416576525 6760737 1107 386 2120 321 SRX2997513 Unrestricted 0.0 Combined_assembly 3300030503 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden III_Palsa_E3 coassembly DOE Joint Genome Institute (JGI) 3300030503 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 4733636633 9000319 1381 268 2121 421 SRX5357827 Unrestricted 0.0 Combined_assembly 3300023212 *Microbiome Permanent Draft Regolith bacterial community from Guaba Ridge, Luquillo Mountains, Puerto Rico Regolith bacterial community from Guaba Ridge, Luquillo Mountains, Puerto Rico. Combined Assembly of Gp0209374, Gp0294277 University of Wisconsin, Madison 3300023212 Combined Assembly MetaSPAdes v. 3.10 released by JGI data releasing policy Yes Yes snapieralski@wisc.edu Stephanie Napieralski No Environmental Terrestrial Unclassified Geologic Unclassified regolith 2179588019 3979176 750 24 1089 36 0.0 Combined_assembly 3300009375 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Combined Assembly of Gp0137073, Gp0137074 Georgia Genomics Facility 3300009375 Combined Assembly IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 514229961 668157 245 0 321 0 0.0 Combined_assembly 3300020950 *Microbiome Permanent Draft Sponge-associated microbial communities in Haliclona fulva from Mediterranean Sea, France Sponge-associated microbial communities in Haliclona fulva from Mediterranean Sea, France. Combined Assembly of 3 SPs MegaHit assembly Macrogen Inc 3300020950 Combined Assembly MegaHit released by JGI data releasing policy No Yes ejgb30@gmail.com Erika Garcia No Host-associated Porifera Unclassified Sponge Unclassified Sponge tissue 15435577 25199 2 5 5 14 0.0 Combined_assembly 3300030002 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden II_Fen_N1 coassembly DOE Joint Genome Institute (JGI) 3300030002 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 3892256227 8792987 2279 230 3692 348 SRX5799361 Unrestricted 0.0 Combined_assembly 3300002040 *Microbiome Permanent Draft Marine microbial communities from Global Ocean Sampling (GOS) GS000c - Sargasso Station 3 J. Craig Venter Institute (JCVI), J. Craig Venter Institute 3300002040 Combined Assembly No Yes jcventer@tcag.org Venter JC Yes 17355176 Environmental Aquatic Intertidal zone Marine Unclassified Marine 9006699085 16106649 11710 258 17702 472 0.0 Combined_assembly 3300015081 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Riverine microbial communities from Columbia River near Beaver Army Terminal, OR, USA, metaT, Winter, Replicates ABC, Gp0208264, Gp0208265, Gp0208266 University of Oregon 3300015081 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 63038083 230075 109 284 269 1001 0.0 Combined_assembly 3300022546 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) LHC4_combined assembly DOE Joint Genome Institute (JGI) 3300022546 Combined Assembly Yes Yes brian.hedlund@unlv.edu; rstepanauskas@bigelow.org Brian Hedlund; Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring 6.83 278765496 564298 168 1 238 2 SRX2753913 Unrestricted 0.0 Combined_assembly 3300015210 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Riverine microbial communities from Columbia River near Beaver Army Terminal, OR, USA, metaT, Summer, Replicates ABC, Gp0208258, Gp0208259, Gp0208260 University of Oregon 3300015210 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 280249169 907933 617 398 1323 992 0.0 Combined_assembly 3300007214 *Microbiome Permanent Draft Cyanobacterial bloom in Punggol reservoir, Singapore (diel cycle) Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface layer) 9 sequencing projects Singapore Centre on Environmental Life Sciences Engineering (SCELSE), The Singapore Centre on Environmental Life Sciences Engineering 3300007214 Combined Assembly CLC Genomics Workbench 8 released per JGI data release policy No Yes boonfei@ualberta.ca BOONFEI TAN No Environmental Aquatic Lake Freshwater Cyanobacterial bloom freshwater lake 721790138 925731 86 6 102 11 0.0 Combined_assembly 3300015615 *Microbiome Permanent Draft Down-flow hanging sponge reactor microbial communities from the University of Illinois at Urbana-Champaign, USA Wastewater bacterial communities from a DHS reactor, Urbana, IL, USA Combined Assembly of Gp0211514, Gp0211515, Gp0211516 University of Illinois, Urbana-Champaign 3300015615 Combined Assembly Megahit v.1.1.1 released by JGI data releasing policy No Yes nkim41@illinois.edu Na Kyung Kim No Engineered Bioreactor Wastewater DHS reactor Unclassified Wastewater 3519170001 4508873 1075 111 1437 163 0.0 Combined_assembly 3300006835 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom Combined Assembly of Gp0125097, Gp0125101, Gp0125102 Shell Corporation 3300006835 Combined Assembly IDBA_UD released per JGI data release policy No Yes tianakorin@googlemail.com, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Tetyana Korin, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 95663996 189616 106 0 173 0 0.0 Combined_assembly 3300008988 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Combined Assembly of De NOVO T65 T0 (live) Oil Sands Gp0125710, Gp0125712, Gp0125662 Shell Corporation 3300008988 Combined Assembly IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 206391355 650716 178 1 338 16 0.0 Combined_assembly 3300067036 *Microbiome Finished Sediment microbial communities from the Saint-Maurice River in Quebec, Canada Combined Assembly of River sediment microbial communities from the Saint-Maurice River near Wemotaci in Quebec, Canada (WEM_4 samples) Genome Quebec 3300067036 Combined Assembly Megahit v. 1.2.7 released by Charlene Lawruk-Desjardins No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Sediment River sediment 0 to .01 7893150998 14708171 1861 127 3859 162 0.0 Combined_assembly 3300007027 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Combined Assembly of Gp0125713, Gp0125714, Gp0125715 Shell Corporation 3300007027 Combined Assembly IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 50380121 86397 43 0 67 0 0.0 Combined_assembly 3300029953 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden II_Bog_E3 coassembly DOE Joint Genome Institute (JGI) 3300029953 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 3141470959 5946136 1153 210 1717 327 SRX5355759 Unrestricted 0.0 Combined_assembly 3300014836 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of St. Lawrence River near Massena, NY, Fall, 2-Oct-2015, Metagenome, Replicates ABC, Gp0208211, Gp0208212, Gp0208213 University of Oregon 3300014836 Combined Assembly Metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 901400421 2383474 383 47 626 92 0.0 Combined_assembly 3300023188 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from nest from French Guiana. Combined Assembly of Gp0238577, Gp0238578 University of Luxembourg 3300023188 Combined Assembly CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 115264374 384623 1 6 8 49 0.0 Combined_assembly 3300028390 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States ANME aggregate JGI 7061.QLV.BNCT.01.K7_combo DOE Joint Genome Institute (JGI) 3300028390 Combined Assembly metaspades v. 3.11.1 Yes Yes rrmalmstrom@lbl.gov; vorphan@gps.caltech.edu Rex Malmstrom; Victoria Orphan No Environmental Aquatic Marine basin floor Marine Sediment marine sediment 5423330 9477 0 0 2 0 Unrestricted 0.0 Combined_assembly 3300050329 *Microbiome Permanent Draft Fecal bacterial communities from pre-IBD and healthy mice, UC Davis, CA, USA Combined Assembly of Fecal bacterial communities from pre-IBD and healthy mice, UC Davis, CA, USA University of California, Davis 3300050329 Combined Assembly SPAdes v3.15.2 Released per request -- IMGSUPP-4336 Yes Yes crtiffany@ucdavis.edu Connor Tiffany No Host-associated Mammals Large intestine Digestive system Fecal Mouse feces 3191462033 3196406 474 25 563 85 0.0 Combined_assembly 3300066662 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Combined Assembly of Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada Microbiome Insights 3300066662 Combined Assembly megahit v. 1.2.9 No Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 7142521938 9485825 1140 54 1296 65 0.0 Combined_assembly 3300007900 *Microbiome Permanent Draft Marine sediment microbial communities from Aarhus Bay station M5, Denmark Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 25 cmbsf. Combined Assembly of MM1PM1 Aarhus University 3300007900 Combined Assembly IDBA_UD released per JGI data release policy No Yes starnas88@gmail.com Piotr Starnawski No Environmental Aquatic Coastal Marine Sediment Marine sediment 259751161 335803 117 1 188 1 0.0 Combined_assembly 3300021195 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Metatranscriptome of riverine microbial communities from St. Lawrence River near Massena, NY, USA.Combined Assembly of 12 SPs University of Oregon 3300021195 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 432366473 1441413 802 1511 1895 4344 0.0 Combined_assembly 3300031122 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Oak Spring Coassembly Site 11 - Champenoux / Amance forest DOE Joint Genome Institute (JGI) 3300031122 Combined Assembly MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 3665836728 7663727 1042 1000 19029 16814 SRX3349207 Unrestricted 0.0 Combined_assembly 3300002408 *Microbiome Permanent Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123) DOE Joint Genome Institute (JGI) 3300002408 Combined Assembly Released by Nikos bc they passed the 6 months embargo date Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 30581671, 30674644 Environmental Aquatic Lentic Freshwater Unclassified Freshwater 3368129613 11326882 4307 2221 8115 3129 SRX1988905 0.0 Combined_assembly 3300037667 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Doriopsilla Microbiome 3 Co-Assembly DOE Joint Genome Institute (JGI) 3300037667 Combined Assembly spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 1517502 1612 1 0 1 0 Unrestricted 0.0 Combined_assembly 3300069122 *Microbiome Finished Sediment microbial communities from the Saint-Maurice River in Quebec, Canada Combined Assembly of River sediment microbial communities from the Saint-Maurice River near Wemotaci in Quebec, Canada (REF_2 samples) Genome Quebec 3300069122 Combined Assembly Megahit v. 1.2.7 released by Charlene Lawruk-Desjardins No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Sediment River sediment 0 to .01 12802105853 23522575 3179 202 6065 355 0.0 Combined_assembly 3300038992 *Microbiome Finished Deep-sea sponge tissue microbial communities from various sponge species in Cantabrian Sea, Spain Deep-sea sponge tissue microbial communities in Pachastrella ovisternata from Cantabrian Sea, Spain. Combined Assembly of Gp0459015, Gp0459079, Gp0459081 University of Liverpool 3300038992 Combined Assembly Trinity v. 2.8.4 released by JGI data releasing policy No Yes diezc08@gmail.com Cristina Diez-Vives No Host-associated Porifera Unclassified Sponge Unclassified Deep-sea sponge tissue 397291244 578087 1 1 0 0 0.0 Combined_assembly 3300010327 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations AD_CNMVca DOE Joint Genome Institute (JGI) 3300010327 Combined Assembly Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 976161882 1967725 689 18 1145 30 SRX2157914 Unrestricted 0.0 Combined_assembly 3300047160 *Microbiome Permanent Draft Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico GRE coassembly MetaHipMer DOE Joint Genome Institute (JGI) 3300047160 Combined Assembly MetaHipMer2 v. 2.0.1.v2.0.0-110-gb87d7c1-Issue69 released based on JGI ITS Yes Yes pettridge2@llnl.gov; campbell87@llnl.gov Jennifer Pett-Ridge; Ashley Campbell No Environmental Terrestrial Tropical forest Soil Bulk soil, Unclassified Soil 74970251022 112151078 8150 468 11438 727 SRX5296075, SRX3604132 Unrestricted 0.0 Combined_assembly 3300031057 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Oak Coassembly Site 11 - Champenoux / Amance forest DOE Joint Genome Institute (JGI) 3300031057 Combined Assembly MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 7346465398 15481574 2657 2692 37094 35106 SRX3345470 Unrestricted 0.0 Combined_assembly 3300002448 *Microbiome Permanent Draft Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran, Adriatic Sea Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge mesohyl, lysed by freeze-thaw cycling (Combined Assembly Aplysina symbiont samples, ASSEMBLY_DATE=20140224) DOE Joint Genome Institute (JGI) 3300002448 Combined Assembly Released by Nikos bc they passed the 6 months embargo date Yes Yes ute.hentschel@uni-wuerzburg.de Ute Hentschel Humeida No Host-associated Porifera Unclassified Sponge Unclassified Host-associated 656002270 1120396 248 20 385 36 SRX4919420 0.0 Combined_assembly 3300028046 *Microbiome Permanent Draft Permafrost microbial communities from glacier foreland in Svalbard, Norway Combined Assembly of ML6-ML20 KOREA POLAR RESEARCH INSTITUTE 3300028046 Combined Assembly Megahit v. 1.1.3 released by JGI data releasing policy Yes Yes sarbjeet.niraula@mavs.uta.edu Sarbjeet Niraula No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 8.3 59829032 169327 191 45 489 60 0.0 Combined_assembly 3300023204 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Riverine microbial communities from Altamaha River at Everett City, GA, USA. Combined Assembly of 12 metaT SPs University of Oregon 3300023204 Combined Assembly rnaspades v. 3.10.1 released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 431182264 1560529 54 396 244 3079 0.0 Combined_assembly 3300019828 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Combined Assembly of Gp0060397, Gp0060465: dna-ANTRC231_01_hybrid_final.fasta J. Craig Venter Institute, J. Craig Venter Institute (JCVI) 3300019828 Combined Assembly Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater 75065209 134628 26 1 41 0 0.0 Combined_assembly 3300007202 *Microbiome Permanent Draft Cyanobacterial bloom in Marina Bay freashwater reservoir, Singapore (Monthly Sampling) Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Monthly Sampling-Site C) 9 sequencing projects National University of Singapore, Singapore-MIT Alliance for Research and Technology, The Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300007202 Combined Assembly CLC Genomics Workbench 8 released per JGI data release policy No Yes boonfei@ualberta.ca BOONFEI TAN No Environmental Aquatic Lake Freshwater Cyanobacterial bloom freshwater lake 464158917 643832 92 29 79 34 0.0 Combined_assembly 3300032515 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data) DOE Joint Genome Institute (JGI) 3300032515 Combined Assembly Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Mixed, Environmental Terrestrial Unclassified Plant litter Unclassified Plant litter 2514668051 5699729 1480 1516 8114 8023 SRX3937010, SRX5229515 Unrestricted 0.0 Combined_assembly 3300015057 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Riverine microbial communities from Mississippi River at Belle Chasse, metaT, Spring, Replicates ABC, Gp0208300, Gp0208301, Gp0208302 University of Oregon 3300015057 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 5597813 22597 31 21 67 62 0.0 Combined_assembly 3300071300 *Microbiome Permanent Draft Agricultural soil microbial communities from Alberta, Canada Combined Assembly of Agricultural soil microbial communities from site 684 in Carvel, Alberta, Canada Microbiome Insights 3300071300 Combined Assembly megahit v. 1.2.9 No Yes lanoil@ualberta.ca Brian Lanoil No Environmental Terrestrial Agricultural land Soil Unclassified agricultural soil 5160592663 7059680 921 52 1074 71 0.0 Combined_assembly 3300043313 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Combined assembly ER_DNA DOE Joint Genome Institute (JGI) 3300043313 Combined Assembly MetaHipMer v. 1.2.2.7-g023cff83 released based on JGI ITS Yes Yes ELBrodie@lbl.gov; CPPennacchio@lbl.gov Eoin Brodie; Christa Pennacchio No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 23700520507 42542660 903 158 1379 243 SRX5354613 Unrestricted 0.0 Combined_assembly 3300012559 *Microbiome Permanent Draft Virome of mice models of T cell mediated intestinal inflamation Combined Assembly of Gp0177870, Gp0177871, Gp0177872 University of Texas Southwestern Medical Center 3300012559 Combined Assembly SPades 3.1 released by JGI data releasing policy No Yes breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal Feces of mice 7678989 7947 7 0 8 0 0.0 Combined_assembly 3300009943 *Microbiome Permanent Draft Stable isotope probing incubations of microbial communities from Chocolate Pots hot springs, Yellowstone National Park, Wyoming, USA Combined Assembly of Gp0139325, Gp0139347, Gp0139348 University of Wisconsin, Madison 3300009943 Combined Assembly CLC Genomics Workbench v. 7.5.1 released by Nathaniel Fortney Yes Yes nwfortney@gmail.com, nwfortney@gmail.com; eroden@geology.wisc.edu Nathaniel Fortney, Nathaniel Fortney; Eric Roden No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring Fe-Si sediment 5.82 652286443 1137581 484 2 848 0 0.0 Combined_assembly 3300022557 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Paint Pots_combined assembly DOE Joint Genome Institute (JGI) 3300022557 Combined Assembly Yes Yes rstepanauskas@bigelow.org; pfdunfie@ucalgary.ca; jkjarett@lbl.gov Ramunas Stepanauskas; Peter Dunfield; Jessica Jarett No Environmental Aquatic Hot (42-90C) Thermal springs Acidic iron-sulfur acid spring 4.19 2107090918 3765107 707 40 1251 64 SRX2745127 Unrestricted 0.0 Combined_assembly 3300010355 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations AD_USDVca DOE Joint Genome Institute (JGI) 3300010355 Combined Assembly released by Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 3423069939 6706074 1564 35 2604 52 SRX2338867 Unrestricted 0.0 Combined_assembly 3300030914 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Coassembly of Cow Y Corn Stover DOE Joint Genome Institute (JGI) 3300030914 Combined Assembly megahit v. 0.2.0 No Yes mhess@lbl.gov, mhess@ucdavis.edu Hess, Matthias, Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 1052704624 2335342 192 1842 1145 4037 SRX5780732 Unrestricted 0.0 Combined_assembly 3300002933 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Combined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA DOE Joint Genome Institute (JGI) 3300002933 Combined Assembly SOAPdenovo 1.05, Newbler v2.8, Minimus2 Released by Nikos bc they passed the 6 months embargo date Yes Yes tmcmahon@engr.wisc.edu, tmcmahon@engr.wisc.edu; rrmalmstrom@lbl.gov Katherine McMahon, Katherine McMahon; Rex Malmstrom Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 319156086 708920 298 28 581 63 Unrestricted 0.0 Combined_assembly 3300028228 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Combined Assembly of Gp0060494, Gp0060379 - Site 232 with 0.1UM filter - spades J. Craig Venter Institute, J. Craig Venter Institute (JCVI) 3300028228 Combined Assembly Spades v. 3.11.1 Released per Simon Roux. Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater 8.85 33518956 65321 11 0 17 0 0.0 Combined_assembly 3300009125 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Combined Assembly of Gp0127974, Gp0127948 Georgia Genomics Facility 3300009125 Combined Assembly IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 739064644 941544 339 264 424 291 0.0 Combined_assembly 3300028946 *Microbiome Finished Riverine microbial communities from big rivers of the USA Combined Assembly of Seasonal metagenomes from Columbia River University of Oregon 3300028946 Combined Assembly metaspades v. 3.11.0 released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton river 2484118650 7983673 1539 166 3087 369 0.0 Combined_assembly 3300042091 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes PEATcosm2014_co-assembly _30_metaG DOE Joint Genome Institute (JGI) 3300042091 Combined Assembly MetaHipMer 2 v. 0.1.4.v0.1.3-204-gcbec665-Issue18 released based on JGI ITS Yes Yes ljlamit@syr.edu; erik.a.lilleskov@usda.gov Louis J. Lamit; Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 8688815737 12979901 1934 57 2800 95 SRX3291949 Unrestricted 0.0 Combined_assembly 3300013295 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling northern Canada Lakes metatranscriptome co-assembly DOE Joint Genome Institute (JGI) 3300013295 Combined Assembly MEGAHIT v. 1.0.6 No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 3486516286 7432786 7487 3617 89911 122435 SRX3015161 Unrestricted 0.0 Combined_assembly 3300020479 *Microbiome Permanent Draft Microbial communities in geothermal temperature gradients from the Taupo Volcanic Zone, New Zealand Hot spring fluid microbial communities from Inferno Crater Lake, Waimangu, New Zealand Combined Assembly of 4 SPs University of Otago 3300020479 Combined Assembly MEGAHIT v1.1.1-2-g02102e1 released by JGI data releasing policy No Yes Kevin.Lee@aut.ac.nz Kevin C Lee No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Geothermal fluid 77066096 123059 42 6 63 10 0.0 Combined_assembly 3300008947 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom Combined Assembly of De NOVO T10 (live) Tyne Sediment Benzoate Gp0125103, Gp0125104, Gp0125105 Shell Corporation 3300008947 Combined Assembly IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 235962801 736393 213 1 715 4 0.0 Combined_assembly 3300023206 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Riverine microbial communities from St. Lawrence River near Massena, NY, USA. Combined Assembly of 11 metaT SPs University of Oregon 3300023206 Combined Assembly rnaspades v. 3.10.1 released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 467076849 1592143 83 356 264 2005 0.0 Combined_assembly 3300010340 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations AD_USOAca DOE Joint Genome Institute (JGI) 3300010340 Combined Assembly Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 1637089236 3205894 1015 15 1594 31 SRX2338986 Unrestricted 0.0 Combined_assembly 3300038811 *Microbiome Finished Deep-sea sponge tissue microbial communities from various sponge species in Cantabrian Sea, Spain Deep-sea sponge tissue microbial communities in Pachastrella ovisternata from Cantabrian Sea, Spain. Combined Assembly of Gp0459136, Gp0459084, Gp0459085 University of Liverpool 3300038811 Combined Assembly Trinity v. 2.8.4 released by JGI data releasing policy No Yes diezc08@gmail.com Cristina Diez-Vives No Host-associated Porifera Unclassified Sponge Unclassified Deep-sea sponge tissue 380948478 555011 6 0 2 0 0.0 Combined_assembly 3300038812 *Microbiome Finished Deep-sea sponge tissue microbial communities from various sponge species in Cantabrian Sea, Spain Deep-sea sponge tissue microbial communities in Pachastrella ovisternata from Cantabrian Sea, Spain. Combined Assembly of Gp0459137, Gp0459133, Gp0459134 University of Liverpool 3300038812 Combined Assembly Trinity v. 2.8.4 released by JGI data releasing policy No Yes diezc08@gmail.com Cristina Diez-Vives No Host-associated Porifera Unclassified Sponge Unclassified Deep-sea sponge tissue 371297770 536839 7 0 4 1 0.0 Combined_assembly 3300028207 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Combined Assembly of Gp0060414, Gp0060495 - Site 233 with 0.1UM filter - spades J. Craig Venter Institute, J. Craig Venter Institute (JCVI) 3300028207 Combined Assembly Spades v. 3.11.1 released by Michelle Allen Yes Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli Yes 21124488 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Marine derived hypersaline lake 6043617 12765 3 0 5 0 0.0 Combined_assembly 3300031231 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Coassembly Site 11 (all samples) - Champenoux / Amance forest DOE Joint Genome Institute (JGI) 3300031231 Combined Assembly MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr; bjorn.lindahl@slu.se Francis M. Martin; Bjorn D. Lindahl No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 14841045295 32256442 4486 4997 85437 62480 SRX2718661 Unrestricted 0.0 Combined_assembly 3300012570 *Microbiome Permanent Draft Virome of mice models of T cell mediated intestinal inflamation Combined Assembly of Gp0177873, Gp0177874, Gp0177875 University of Texas Southwestern Medical Center 3300012570 Combined Assembly SPAdes 3.1 released by JGI data releasing policy No Yes breck.duerkop@ucdenver.edu Breck Duerkop No Host-associated Mammals Large intestine Digestive system Fecal Feces of mice 13475109 13464 17 0 14 0 0.0 Combined_assembly 3300010351 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations AD_USPNca DOE Joint Genome Institute (JGI) 3300010351 Combined Assembly released by Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 2411457326 4629862 1389 12 2255 23 SRX2338909 Unrestricted 0.0 Combined_assembly 3300010352 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations AD_JPHWca DOE Joint Genome Institute (JGI) 3300010352 Combined Assembly released by Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 2690641073 5387013 1286 39 2163 45 SRX2157902 Unrestricted 0.0 Combined_assembly 3300040978 *Microbiome Permanent Draft Ice-wedge Polygon SIP Study Soil microbial communities from ice wedge polygon in Axel Heiberg Island, Nunavut, Canada. Combined Assembly of Gp0402321, Gp0402355, Gp0402358 Biotechnology Research Institute, National Research Council of Canada 3300040978 Combined Assembly Megahit v. 1.1.3 released by JGI data releasing policy No Yes ianina.altshuler@mail.mcgill.ca Ianina Altshuler No Environmental Terrestrial Soil crust Soil Unclassified ice-wedge polygon soil 648712878 1208840 182 6 354 9 0.0 Combined_assembly 3300000553 *Microbiome Draft Freshwater microbial communities from Lake Mendota and Trout Bog Lake, Wisconsin, USA Trout Bog Lake May 28 2007 Hypolimnion (Trout Bog Lake Combined Assembly 47 Hypolimnion Samples, Aug 2012 Assem) DOE Joint Genome Institute (JGI) 3300000553 Combined Assembly Yes Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 26744812, 30581671, 30674644 Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 547080431 690501 231 27 275 32 0.0 Combined_assembly 3300030740 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly DOE Joint Genome Institute (JGI) 3300030740 Combined Assembly MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 3925344865 8142545 363 323 4648 1755 SRX4011190 Unrestricted 0.0 Combined_assembly 3300031446 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Fir Summer Coassembly Site 11 - Champenoux / Amance forest DOE Joint Genome Institute (JGI) 3300031446 Combined Assembly MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr; bjorn.lindahl@slu.se Francis M. Martin; Bjorn D. Lindahl No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 3858215194 8826405 1467 1585 34504 21098 SRX2718661 Unrestricted 0.0 Combined_assembly 3300017469 *Microbiome Permanent Draft Yellowstone National Park Obsidian Pool microbial communities Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA - Obsidian 4. Combined Assembly of Gp0212719, Gp0212720 Stanford University 3300017469 Combined Assembly SPAdes, metaSPAdes v10.0 and Megahit published in PNAS (release before publication date) No Yes berghuis@stanford.edu Bojk Berghuis No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hotspring sediment 63075079 72058 26 0 22 0 0.0 Combined_assembly 3300029954 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden I_Bog_N3 coassembly DOE Joint Genome Institute (JGI) 3300029954 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 3651945173 7049691 1198 207 1858 332 SRX5355609 Unrestricted 0.0 Combined_assembly 3300008517 *Microbiome Permanent Draft Marine sediment microbial communities from Aarhus Bay station M5, Denmark Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 175 cmbsf. Combined Assembly of Gp0128389 and Gp0131431 MM4PM4 Aarhus University 3300008517 Combined Assembly IDBA_UD released per JGI data release policy No Yes starnas88@gmail.com Piotr Starnawski No Environmental Aquatic Coastal Marine Sediment Marine sediment 739653389 929666 290 2 360 1 0.0 Combined_assembly 3300004479 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs DOE Joint Genome Institute (JGI) 3300004479 Combined Assembly MEGAHIT v. 0.2.0 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 8493302640 27273916 3229 210 7044 616 SRX1991327 Unrestricted 0.0 Combined_assembly 3300001357 *Microbiome Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Combined assembly of Elkhorn Slough mat metaG (MD2A, MD6A, CD2A, CD6A) DOE Joint Genome Institute (JGI) 3300001357 Combined Assembly Yes Yes pettridge2@llnl.gov, jim.fredrickson@pnnl.gov; pettridge2@llnl.gov Jennifer Pett-Ridge, Jim Fredrickson; Jennifer Pett-Ridge Yes 29167704 Environmental Aquatic Saline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 829358478 1762530 922 34 1550 82 Unrestricted 0.0 Combined_assembly 3300030114 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden I_Fen_E2 coassembly DOE Joint Genome Institute (JGI) 3300030114 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 4231401372 10308992 2920 281 4911 460 SRX5355611 Unrestricted 0.0 Combined_assembly 3300023285 *Microbiome Permanent Draft Riverine microbial communities from Willamette River, Corvallis, OR, USA Lab enrichment of the riverine microbial communities from Willamette River, OR, USA. Combined Assembly of 36 SPs metaT Oregon State University 3300023285 Combined Assembly rnaspades v. 3.10.1 released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified freshwater 512436743 1814574 2221 1852 21982 9994 0.0 Combined_assembly 3300007089 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom Combined Assembly of 100 bp T18 (live) Gp0123698, Gp0123960, Gp0123961 Shell Corporation 3300007089 Combined Assembly IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, nicolas.tsesmetzis@shell.com; ianhead@ncl.ac.uk Nicolas Tsesmetzis, Nicolas Tsesmetzis; Ian Head No Environmental Aquatic River Freshwater Sediment Sediment 111617039 230214 107 0 160 0 0.0 Combined_assembly 3300023291 *Microbiome Permanent Draft Metagenomes from anaerobic digester of solid waste Food waste and fibre mixture microbial community, University of Toronto, Ontario, Canada. Combined Assembly of Gp0242115, Gp0242119 University of Toronto 3300023291 Combined Assembly megahit v. 1.1.1 No Yes elizabeth.edwards@utoronto.ca; camillaln@gmail.com Elizabeth A. Edwards; Camilla Nesb? No Engineered Solid waste Unclassified Household waste Unclassified food waste 1661191719 2510055 588 271 886 373 SRX4965139, SRX4986166 0.0 Combined_assembly 3300015070 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Riverine microbial communities from St. Lawrence River near Massena, NY, USA, metaT, Winter, Replicates ABC, Gp0208285, Gp0208286, Gp0208287 University of Oregon 3300015070 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 49238312 151078 86 152 212 496 0.0 Combined_assembly 3300035298 *Microbiome Permanent Draft Metagenomes from oil sands tailing ponds Wastewater microbial community from oil sands tailing pond near Ft. McMurray, Canada. Combined Assembly of E182c 2SPs University of Alberta 3300035298 Combined Assembly megahit v. 1.1.1 released by JGI data releasing policy No Yes camillaln@gmail.com Camilla Nesb? No Engineered Wastewater Petrochemical Industrial wastewater Unclassified wastewater 117616364 150618 54 1 79 0 0.0 Combined_assembly 3300040731 *Microbiome Finished Deep-sea sponge tissue microbial communities from various sponge species in Cantabrian Sea, Spain Combined Assembly of Deep-sea sponge tissue microbial communities in Pachastrella ovisternata from Cantabrian Sea, Spain University of Liverpool 3300040731 Combined Assembly Trinity v. 2.8.4 released by JGI data releasing policy No Yes diezc08@gmail.com Cristina Diez-Vives No Host-associated Porifera Unclassified Sponge Unclassified Deep-sea sponge tissue 337382456 485554 3 0 0 0 0.0 Combined_assembly 3300002245 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027) DOE Joint Genome Institute (JGI) 3300002245 Combined Assembly Released by Nikos bc they passed the 6 months embargo date Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Forest soil 3707359041 9003931 2081 577 4280 1044 SRX3312018 0.0 Combined_assembly 3300007989 *Microbiome Permanent Draft Microbial communities of marine eelgrass Microbial communities of Eelgrass leaves from Netarts Bay, Oregon, USA.Combined Assembly of Gp0128395, Gp0128394 Oregon State University 3300007989 Combined Assembly Megahit v. 1.0.1 released per JGI data release policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified estuary 1058129880 2847247 879 139 1494 313 0.0 Combined_assembly 3300030773 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Coassembly of Cow Y Rumen Fluid DOE Joint Genome Institute (JGI) 3300030773 Combined Assembly megahit v. 0.2.0 No Yes mhess@lbl.gov, mhess@ucdavis.edu Hess, Matthias, Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 798893626 1928028 1043 1878 4133 5396 SRX5780734 Unrestricted 0.0 Combined_assembly 3300010937 *Microbiome Permanent Draft DCO-ECS Fumarole sampling, Azores 2015 Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139 University of Minnesota - Twin Cities 3300010937 Combined Assembly IDBA_UD released by JGI data releasing policy No Yes cssheik@d.umn.edu Cody Sheik No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 5.5 531625937 1187973 438 36 780 62 0.0 Combined_assembly 3300010348 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations AD_HKYLca DOE Joint Genome Institute (JGI) 3300010348 Combined Assembly released by Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 2080981111 4112277 1279 55 2151 93 SRX2339079 Unrestricted 0.0 Combined_assembly 3300045366 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Boreal Plains ecozone, Canada. Combined Assembly of 37 SPs Genome Quebec 3300045366 Combined Assembly Megahit v. 1.2.7. released by Vera Onana Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 13930761028 23574217 2432 802 3848 1259 0.0 Combined_assembly 3300069644 *Microbiome Finished Sediment microbial communities from the Saint-Maurice River in Quebec, Canada Combined Assembly of River sediment microbial communities from the Saint-Maurice River near Wemotaci in Quebec, Canada (CA_10 samples) Genome Quebec 3300069644 Combined Assembly Megahit v. 1.2.7 released by Charlene Lawruk-Desjardins No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Sediment River sediment 0 to .01 14817137217 26406835 1921 93 3484 178 0.0 Combined_assembly 3300005080 *Microbiome Permanent Draft Activated sludge wastewater microbial communities from Ann Arbor, Michigan, USA Combined Assembly of Gp0111534, Gp0111535, Gp0111536, Gp0111537, Gp0111539, Gp0111540, Gp0111541, Gp0111542, Gp0111543 University of Michigan 3300005080 Combined Assembly IDBA Released for public access per Lauren Stadler (April 19, 2016) No Yes nglove@umich.edu Nancy Love No Engineered Wastewater Unclassified Activated Sludge Unclassified Wastewater bioreactor 655052089 1483308 516 3 744 2 0.0 Combined_assembly 3300012469 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Combined assembly of Soil carbon rhizosphere DOE Joint Genome Institute (JGI) 3300012469 Combined Assembly MEGAHIT v. 1.0.6 No Yes nuccio1@llnl.gov; mkfstone@berkeley.edu Erin Nuccio; Mary Firestone No Mixed, Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 12702072540 28956650 227238 155055 486578 390843 SRX2557984 Unrestricted 0.0 Combined_assembly 3300021430 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Riverine microbial communities from Altamaha River at Everett City, GA, USA. Combined Assembly of 12 SPs University of Oregon 3300021430 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 2355816641 6729254 1623 182 3162 405 0.0 Combined_assembly 3300004114 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5 DOE Joint Genome Institute (JGI) 3300004114 Combined Assembly SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 8686253461 25646420 3251 115 7243 317 SRX1990517 Unrestricted 0.0 Combined_assembly 3300016668 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Combined Assembly of Gp0060490, Gp0060398: dna-ANTRC227_01_hybrid_final.fasta J. Craig Venter Institute, J. Craig Venter Institute (JCVI) 3300016668 Combined Assembly Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified Freshwater 6.94 57042931 130069 42 0 99 0 0.0 Combined_assembly 3300037994 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Atlantic Maritime Ecozone, Canada. Combined Assembly of 25 SPs Genome Quebec 3300037994 Combined Assembly Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 4705869866 6282800 558 217 675 185 0.0 Combined_assembly 3300004069 *Microbiome Permanent Draft Deep subsurface and oceanic microbial communities from Witwatersrand Basin, South Africa, and the Canadian and Fennoscandian shields and at the Lost City Hydrothermal Field Combined assembly of 1362B_J2.571 and 1362A_J2.573 DOE Joint Genome Institute (JGI) 3300004069 Combined Assembly MEGAHIT v. 0.2.0 Yes Yes rstepanauskas@bigelow.org, seanpj@hawaii.edu; rstepanauskas@bigelow.org; cssulliv@hawaii.edu; rappe@hawaii.edu Ramunas Stepanauskas, Sean Jungbluth; Ramunas Stepanauskas; Clarisse Sullivan; Michael Rappe Yes 28270584, 28350381, 28396823, 29467397 Environmental Aquatic Hydrothermal vents Marine Diffuse flow Deep oceanic, basalt-hosted subsurface hydrothermal fluid -2667 390457103 978132 446 44 831 62 SRX753337, SRX1880758 Unrestricted 0.0 Combined_assembly 3300022816 *Microbiome Permanent Draft Alaskan permafrost microbial communities Permafrost soil microbial communities from SagMAT, Sagwon, Alaska, USA. Combined Assembly of Gp0294031, Gp0294032, Gp0294033, Gp0294034 Stanford University 3300022816 Combined Assembly SPAdes v. 3.10.0, metaSPAdes v. 10.0 and Megahit v. 1.1.1 released by JGI data releasing policy No Yes berghuis@stanford.edu Bojk Berghuis No Environmental Terrestrial Wetlands Soil Permafrost Permafrost soil 372772778 400407 89 5 86 6 0.0 Combined_assembly 3300022667 *Microbiome Permanent Draft Cellulose degradation Enrichment Combined Assembly of Gp0293158, Gp0293159, Gp0293160 Genomics Core Facility (Oslo University Hospital and University of Oslo) 3300022667 Combined Assembly Spades v. 3.10.0 released by JGI data releasing policy No Yes benoit.j.kunath@gmail.com Benoit Kunath No Engineered Bioreactor Unclassified Anaerobic Unclassified Bioreactor Biomass 24656369 40889 17 0 26 2 0.0 Combined_assembly 3300021790 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from Nasutitermes sp. nest in French Guiana. Combined Assembly of Gp0264968, Gp0264969, Gp0264970, Gp0264971 University of Luxembourg 3300021790 Combined Assembly CLC Genomics Workbench Version 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 404211795 1392404 2 11 17 37 0.0 Combined_assembly 3300011012 *Microbiome Permanent Draft Marine surface microbial communities from Baltic Sea - BIOACID_cyano Marine surface microbial communities from Baltic Sea. Combined Assembly of 24 SPs Berlin Center for Genomics in Biodiversity Research (BeGenDiv) 3300011012 Combined Assembly Trinity v 2.2.0 released by JGI data releasing policy No Yes zoccarato@igb-berlin.de Luca Zoccarato No Environmental Aquatic Pelagic Marine Unclassified marine 264748537 726877 1744 841 2896 1814 0.0 Combined_assembly 3300020605 *Microbiome Permanent Draft Sponge Microbiome Project Reference Genomes Sponge tissue associated microbial communities from Hexaddella. cf. dedritifera. Combined Assembly of Gp0219500, Gp0220755 Woods Hole Oceanographic Institution 3300020605 Combined Assembly IDBAUD released by JGI data releasing policy Yes Yes shan.zhang@student.unsw.edu.au Shan Zhang No Host-associated Porifera Unclassified Sponge Unclassified Sponge tissue 2595135 2600 1 0 1 0 0.0 Combined_assembly 3300029990 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden I_Fen_N2 coassembly DOE Joint Genome Institute (JGI) 3300029990 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 4246289847 10271819 2843 263 4884 450 SRX5281746 Unrestricted 0.0 Combined_assembly 3300006653 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom Combined Assembly of Gp0123708, Gp0123962, Gp0123963 Shell Corporation 3300006653 Combined Assembly IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, nicolas.tsesmetzis@shell.com; ianhead@ncl.ac.uk Nicolas Tsesmetzis, Nicolas Tsesmetzis; Ian Head No Environmental Aquatic River Freshwater Sediment Sediment 62409315 116322 105 0 124 2 0.0 Combined_assembly 3300022543 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Indian_combined assembly DOE Joint Genome Institute (JGI) 3300022543 Combined Assembly Yes Yes rstepanauskas@bigelow.org; wswingley@niu.edu Ramunas Stepanauskas; Wesley Swingley No Environmental Aquatic Creek, Unclassified Freshwater Sediment, Unclassified Freshwater 13-14 251240649 621517 343 41 597 81 SRX3296546 Unrestricted 0.0 Combined_assembly 3300009365 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Combined Assembly of Gp0127942, Gp0127943 Georgia Genomics Facility 3300009365 Combined Assembly IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 1587842778 1697737 522 4 678 6 0.0 Combined_assembly 3300000440 *Microbiome Draft Arabidopsis rhizosphere microbial communities from the University of North Carolina Arabidopsis combined assembly (Arabidopsis Combined Assembly, July 2012 Convey Velvet Assem) DOE Joint Genome Institute (JGI) 3300000440 Combined Assembly released per Simon -- IMGSUPP2953 Yes Yes sgtringe@lbl.gov, sgtringe@lbl.gov; dangl@email.unc.edu Susannah Tringe, Susannah Tringe; Jeff Dangl Yes 22859206 Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 2392126454 3897657 79 5 206 26 0.0 Combined_assembly 3300021253 *Microbiome Permanent Draft Multi-omic termite study Gut symbiotic bacterium of neotenics of Cavitermes sp. - nest from French Guiana . Combined Assembly of Gp0256202, Gp0256203, Gp0256204 University of Luxembourg 3300021253 Combined Assembly CLC Genomics Workbench Version 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified neotenic termite gut 146275686 203481 0 0 1 0 0.0 Combined_assembly 3300027264 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication APAL treatment metatranscriptome co-assembly DOE Joint Genome Institute (JGI) 3300027264 Combined Assembly MEGAHIT v. 1.1.2 Yes Yes momedinamunoz@gmail.com Medina Medina No Host-associated Invertebrates Coral Cnidaria Unclassified coral 284683425 407276 97 217 1757 1312 SRX3998602 Unrestricted 0.0 Combined_assembly 3300039454 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Combined Assembly of Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil DOE Joint Genome Institute (JGI) 3300039454 Combined Assembly MEGAHIT v. 1.2.7 Released on PI's request No Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Host-associated Plants Unclassified Roots Unclassified plant roots 2781520748 3634794 696 71 1048 88 SRX4939666 0.0 Combined_assembly 3300009372 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Combined Assembly of Gp0127938, Gp0127939 Georgia Genomics Facility, Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300009372 Combined Assembly IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 1082998891 1255661 416 43 526 39 0.0 Combined_assembly 3300009371 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Combined Assembly of Gp0127934, Gp0127935 Georgia Genomics Facility 3300009371 Combined Assembly IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 1028028157 1272741 327 93 394 116 0.0 Combined_assembly 3300005654 *Microbiome Permanent Draft Genome and metagenome analysis of marine red algae Porphyra Porphyra Blade Metagenome Co-Assembly DOE Joint Genome Institute (JGI) 3300005654 Combined Assembly MEGAHIT v. 0.2.0 Released by Nikos because they are over 3 years old Yes Yes brawley@maine.edu, Brawley@maine.edu Susan Brawley No Host-associated Algae Blade Red algae Unclassified marine 1044721025 2621287 921 79 1276 120 Unrestricted 0.0 Combined_assembly 3300041002 *Microbiome Permanent Draft Anaerobic reactors microbiome study Activated sludge microbial communities from lab. scaled anaerobic digester in Belvaux, Luxembourg. Combined Assembly of 10 SPs University of Luxembourg, Luxembourg Institute of Science and Technology 3300041002 Combined Assembly CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 467227133 571579 158 3 241 4 0.0 Combined_assembly 3300033061 *Microbiome Draft Lake microbial communities from Canada Microbial communities from the Boreal Shield Ecozone, Canada. Combined Assembly of Gp0356613, Gp0356612, Gp0356506 Genome Quebec 3300033061 Combined Assembly MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca; vera.onana@mail.concordia.ca David Walsh; Vera Onana No Environmental Aquatic Lake Freshwater Unclassified Freshwater 2711096423 5574593 1143 95 2101 191 0.0 Combined_assembly 3300033062 *Microbiome Draft Lake microbial communities from Canada Microbial communities from the Atlantic Highlands Ecozone, Canada. Combined Assembly of Gp0356615, Gp0356614, Gp0356580 Genome Quebec 3300033062 Combined Assembly MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment, Unclassified Freshwater 1941564522 4213969 1143 60 2255 141 0.0 Combined_assembly 3300021981 *Microbiome Permanent Draft Riverine microbial communities from Willamette River, Corvallis, OR, USA Lab enrichment of the riverine microbial communities from Willamette River, OR, USA . Combined Assembly of 42 SPs Oregon State University 3300021981 Combined Assembly metaspades v.3.11.0 released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified freshwater 735886688 2712406 33003 10698 66882 24252 0.0 Combined_assembly 3300003505 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924) DOE Joint Genome Institute (JGI) 3300003505 Combined Assembly SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Released by Nikos bc they passed the 6 months embargo date Yes Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 814320942 1794298 1559 2654 3933 5517 SRX2014433 Unrestricted 0.0 Combined_assembly 3300015092 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Riverine microbial communities from St. Lawrence River near Massena, NY, USA, metaT, Summer, Replicates ABC, Gp0208279, Gp0208280, Gp0208281 University of Oregon 3300015092 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 97932839 322145 125 296 300 704 0.0 Combined_assembly 3300042731 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Mangrove combined assembly DOE Joint Genome Institute (JGI) 3300042731 Combined Assembly MetaHipMer v. 1.2.2.26-ga5b7efdd-dirty released based on JGI ITS Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 33347116427 52733603 4255 155 7271 215 SRX8255465 Unrestricted 0.0 Combined_assembly 3300056388 *Microbiome Permanent Draft Sugarcane leaf and rhizosphere microbial communities from a greenhouse and field in University of Florida, Reddick, FL, USA Oilcane rhizosphere soil metagenome combined assembly DOE Joint Genome Institute (JGI) 3300056388 Combined Assembly MetaHipMer v. 2.1.0.90-g7529d1f-master released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 94864255334 156518128 18876 924 27755 1437 Restricted 0.0 Combined_assembly 3300030399 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden II_Palsa_E2 coassembly DOE Joint Genome Institute (JGI) 3300030399 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 3445768074 7117148 1326 226 2007 395 SRX5355863 Unrestricted 0.0 Combined_assembly 3300028915 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Yukon River assembly metatranscriptome University of Oregon 3300028915 Combined Assembly rnaspades v. 3.10.1 released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 117749654 438406 37 69 213 621 0.0 Combined_assembly 3300009130 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Combined Assembly of Gp0139511, Gp0139512 Georgia Genomics Facility 3300009130 Combined Assembly IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 578144952 703113 327 230 464 246 0.0 Combined_assembly 3300017605 *Microbiome Permanent Draft Microbial metagenomes of rhizospheric soil samples from Willow field trial in the northeast United States Shrub willow rhizosphere microbial communities from Fredonia field trial, Ithaca, NY, USA Combined Assembly of 48 sequencing projects Pennsylvania State University (USA) 3300017605 Combined Assembly MetaHit released by JGI data releasing policy No Yes jec16@psu.edu John Carlson No Host-associated Plants Rhizosphere Roots Soil, Unclassified rhizosphere 1238394674 1632653 302 24 413 36 0.0 Combined_assembly 3300029907 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden I_Bog_N1 coassembly DOE Joint Genome Institute (JGI) 3300029907 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 2065595758 4159823 756 137 1134 195 SRX5281063 Unrestricted 0.0 Combined_assembly 3300021191 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Metatranscriptome of riverine microbial communities from Yukon River at Pilot Station, AK, USACombined Assembly of 9 SPs University of Oregon 3300021191 Combined Assembly metaspates released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 109025651 397953 331 381 821 1546 0.0 Combined_assembly 3300042691 *Microbiome Permanent Draft Freshwater fungal communities from various locations Lake Erie Buoy Combined Assembly DOE Joint Genome Institute (JGI) 3300042691 Combined Assembly MetaHipMer v. 1.2.1.282-g2fb82a99 (main-96-31818832) released based on JGI ITS Yes Yes tyjames@umich.edu Timothy Y. James No Environmental Aquatic Lake Freshwater Lake biofilm, Unclassified freshwater 9729260442 14995323 1358 514 2129 759 SRX6420477 Unrestricted 0.0 Combined_assembly 3300027914 *Microbiome Permanent Draft Anaerobic reactors microbiome study Activated sludge microbial communities from lab. scaled anaerobic digester in Belvaux, Luxembourg. Combined Assembly of 20 SPs University of Luxembourg 3300027914 Combined Assembly CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 1306476935 1426576 274 0 291 0 0.0 Combined_assembly 3300028921 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Columbia River assembly metatranscriptomes University of Oregon 3300028921 Combined Assembly rnaspades v. 3.10.1 released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton Freshwater 990954245 3378964 258 672 1036 3020 0.0 Combined_assembly 3300031085 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Coassembly of Cow X and Y Rumen Fluid DOE Joint Genome Institute (JGI) 3300031085 Combined Assembly megahit v. 0.2.0 No Yes mhess@lbl.gov, mhess@ucdavis.edu Hess, Matthias, Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 1777714429 4300383 2632 4083 10193 9653 SRX5780727 Unrestricted 0.0 Combined_assembly 3300017696 *Microbiome Permanent Draft Yellowstone National Park Obsidian Pool microbial communities Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA - Obsidian 6. Combined Assembly of Gp0212723, Gp0212724 Stanford University 3300017696 Combined Assembly SPAdes, metaSPAdes v10.0 and Megahit published in PNAS (release before publication date) No Yes berghuis@stanford.edu Bojk Berghuis No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hotspring sediment 77232712 88175 40 0 41 0 0.0 Combined_assembly 3300031611 *Microbiome Permanent Draft Namib Desert soil rainfall metatranscriptomes Desert soil microbial communities from Gobabeb, Namibia. Combined Assembly of 12 treated samples Admera Health 3300031611 Combined Assembly trans-ABySS v. 2.0.1 released by JGI data releasing policy Yes Yes don.cowan@up.ac.za Don Cowan No Environmental Terrestrial Sand Soil Desert Soil 121575386 222445 320 138 1223 665 0.0 Combined_assembly 3300028922 *Microbiome Permanent Draft Gypsum rock endolithic and hypoendolithic microbial communities Gypsum rock endolithic microbial communities from the Atacama Desert, Chile. Combined Assembly of 9SPs Johns Hopkins Bayview Research CORES, Johns Hopkins School of Medicine 3300028922 Combined Assembly Megahit v. 1.1.2 released by JGI data releasing policy No Yes jdiruggiero@jhu.edu Jocelyne DiRuggiero No Environmental Terrestrial Unclassified Rock-dwelling (endoliths) Unclassified rock 159007989 195549 29 0 23 0 0.0 Combined_assembly 3300061147 *Microbiome Permanent Draft Surface microbial communities from International Space Station, USA module Combined Assembly of surface microbial communities from International Space Station, Mission 1 samples, untreated Jet Propulsion Laboratory, California Institute of Technology 3300061147 Combined Assembly Custom JGI assembly v. 1. Making Public on PI's approval Yes Yes pratyaysengupta@smail.iitm.ac.in; kjvenkat@jpl.nasa.gov Pratyay Sengupta; Venkateswaran K Yes 30424821, 30955503 Engineered Built environment Unclassified International Space Station Unclassified Surface 335833380 876681 47 42 124 67 SRX3808521, SRX3808533, SRX2249339, SRX2249336 0.0 Combined_assembly 3300059965 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany FW MetaG CoAssembly DOE Joint Genome Institute (JGI) 3300059965 Combined Assembly MetaHipMer v. 2.1.0.1.380-gf770aca-dirty-master released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 12164467679 23408977 2616 356 4226 567 Unrestricted 0.0 Combined_assembly 3300037193 *Microbiome Permanent Draft Sorghum rhizosphere soil microbial communities from California, USA Sorghum rhizosphere microbial community from Fresno, CA, USA. Combined Assembly of 52 SPs QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300037193 Combined Assembly Megahit 1.1.1 released by JGI data releasing policy No Yes xuling@berkeley.edu Ling Xu No Mixed, Environmental Terrestrial Unclassified Soil Agricultural land Soil 3566304551 4239508 159 16 150 17 0.0 Combined_assembly 3300019854 *Microbiome Permanent Draft Human oral microbial communities from OSU Dentistry, Columbus, Ohio Human oral microbial communities from OSU Dentistry, Columbus, Ohio, USA. Combined Assembly of 23 SPs 3300019854 Combined Assembly MEGAHIT v1.0.6-3-gfb1e59b Want to make available for manuscript/preprint submission No Yes beall.3@osu.edu Clifford Beall No Host-associated Mammals: Human Oral cavity Digestive system Saliva Human oral 1138792 1591 0 0 0 0 0.0 Combined_assembly 3300028579 *Microbiome Permanent Draft Xanthan Degradation and Enrichment Lab enriched human feces bacterial community from Ann Arbor, Michigan, USA. Combined Assembly of 4 SPs Genomics Core Facility (Oslo University Hospital and University of Oslo) 3300028579 Combined Assembly MetaSpades v. 3.10.0 released by JGI data releasing policy No Yes phillip.b.pope@gmail.com Phil B. Pope No Host-associated Mammals: Human Large intestine Digestive system Fecal Human feces 86460944 79464 39 0 28 0 0.0 Combined_assembly 3300040749 *Microbiome Permanent Draft Lab enriched freshwater microbial communities from Conesus Lake in New York, USA - Gen2020 Combined Assembly of Lab-enriched freshwater microbial communities from Conesus Lake, New York, USA - Gp0490327, Gp0490334 University of Pittsburgh 3300040749 Combined Assembly Megahit v. 1.2.9 released by JGI data releasing policy No Yes lpeoples@ucsd.edu Logan Peoples No Environmental Aquatic Lake Freshwater Unclassified Freshwater 0 18036273 19780 8 0 8 0 0.0 Combined_assembly 3300028446 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat Fecal Pellet Co-assembly of XG5R1, XG5R2, XG10R1, and XG10R2 DOE Joint Genome Institute (JGI) 3300028446 Combined Assembly No Yes xpeng@seoe.sc.edu; momalley@engineering.ucsb.edu Xuefeng (Nick) Peng; Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 28087172 32718 51 0 53 1 SRX5645531 Unrestricted 0.0 Combined_assembly 3300028584 *Microbiome Permanent Draft Sinkhole microbial mat communities from Lake Huron, Michigan, USA Mesocosm sinkhole microbial mat communities from Lake Huron, Michigan, USA Combined Assembly of JMKT5, JMK111 University of Michigan 3300028584 Combined Assembly MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes sgrim01@gmail.com Sharon Grim No Engineered Lab enrichment Unclassified Defined media Unclassified microbial mat 859575609 1096941 324 13 396 16 0.0 Combined_assembly 3300023203 *Microbiome Permanent Draft Metagenomes from anaerobic digester of solid waste Combined Assembly of Gp0238866, Gp0238878 University of Toronto 3300023203 Combined Assembly megahit v. 1.1.1 No Yes elizabeth.edwards@utoronto.ca; camillaln@gmail.com Elizabeth A. Edwards; Camilla Nesb? No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic digester digestate 1202075960 1820670 724 9 1133 7 0.0 Combined_assembly 3300007269 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Combined Assembly of Gp0125721, Gp0125670 Shell Corporation 3300007269 Combined Assembly IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 85381986 124563 107 0 131 0 0.0 Combined_assembly 3300005519 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Combined assembly of arab plate scrape CL_Col (Combined Assembly) DOE Joint Genome Institute (JGI) 3300005519 Combined Assembly MEGAHIT v. 0.2.0 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere, Unclassified Roots Unclassified Arabidopsis root 956482038 1821432 153 2 1029 7 SRX1991094 Unrestricted 0.0 Combined_assembly 3300015375 *Microbiome Permanent Draft Cyanobacterial bloom in two Singapore reservoirs in 2015 Combined Assembly of of cyanobacterial bloom in Serangoon reservoir, Singapore (monthly sampling, 2015) 8 sequencing projects Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300015375 Combined Assembly CLC GENOMICS WORKBENCH 8.5 released by JGI data releasing policy No Yes boonfei@ualberta.ca BOONFEI TAN No Environmental Aquatic Lake Freshwater Cyanobacterial bloom freshwater lake 689421637 866356 94 9 112 8 0.0 Combined_assembly 3300003365 *Microbiome Permanent Draft Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA Combined assembly of clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - Phoenix at KSC-PHSF (ASSEMBLY_DATE=20140826) DOE Joint Genome Institute (JGI) 3300003365 Combined Assembly SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Released by Nikos bc they passed the 6 months embargo date Yes Yes nnivanova@lbl.gov, NNIvanova@lbl.gov; nnivanova@lbl.gov Natasha Ivanova, Natalia Ivanova; Natasha Ivanova No Engineered Built environment Unclassified Spacecraft Assembly Cleanrooms Unclassified Clean room 96421855 205685 700 33 60 19 Unrestricted 0.0 Combined_assembly 3300001661 *Microbiome Permanent Draft Forest soil microbial communities from multiple locations in Canada and USA Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly) DOE Joint Genome Institute (JGI) 3300001661 Combined Assembly Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 1454623556 3718420 2847 663 4972 1494 SRX2021683, SRX1985414 0.0 Combined_assembly 3300032894 *Microbiome Draft Lake microbial communities from Canada Microbial communities from the Atlantic Highlands Ecozone, Canada. Combined Assembly of Gp0356617, Gp0356616, Gp0356587 Genome Quebec 3300032894 Combined Assembly MEGAHIT v. 1.1.3 released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Sediment, Unclassified Freshwater 1567574064 3615548 844 106 1716 230 0.0 Combined_assembly 3300028830 *Microbiome Permanent Draft Membrane Aerated Biofilm Reactor Sulfur Study Combined Assembly of Gp0304200, Gp0304201 University of Michigan 3300028830 Combined Assembly Megahit v. 1.1.2 released by JGI data releasing policy Yes Yes nglove@umich.edu Nancy Love No Engineered Bioreactor Unclassified Aerobic Unclassified Biofilm 7.7 975859271 1507546 452 40 700 48 0.0 Combined_assembly 3300023311 *Microbiome Permanent Draft Thermokarst lakes Summer vs Winter Combined Assembly of Gp0281739, Gp0281740, Gp0281741 Laval University 3300023311 Combined Assembly Megahit v. 1.0.5 released by Adrien Vigneron No Yes avignero@gmail.com Adrien Vigneron No Environmental Aquatic Lake Freshwater Unclassified Freshwater 1553445310 3589330 391 30 1183 81 0.0 Combined_assembly 3300008156 *Microbiome Permanent Draft Marine eukaryotic communities from various locations to study complex ecological interactions Minidiscus trioculatus Co-assembly DOE Joint Genome Institute (JGI) 3300008156 Combined Assembly spades v. 3.6.2 No Yes azworden@mbari.org, azworden@mbari.org; twoyke@lbl.gov Alexandra Worden, Alexandra Worden; Tanja Woyke No Environmental Aquatic Unclassified Marine Unclassified Marine 56915624 53567 1 1 2 1 Unrestricted 0.0 Combined_assembly 3300021422 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Riverine microbial communities from Yukon River at Pilot Station, AK, USA. Combined Assembly of 9 SPs University of Oregon 3300021422 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic Drinking water Freshwater Unclassified freshwater 1031401923 3415414 979 45 1906 111 0.0 Combined_assembly 3300017613 *Microbiome Permanent Draft Investigating the Microbiome of Thiomargarita & Thiopilula Thiomargarita and Thiopilula spp. associated microbial communities from marine sediment, the Benguela Current, Namibia. Combined Assembly of 16 sequencing projects University of Minnesota - Twin Cities 3300017613 Combined Assembly megabit v1.0.6.1 released by JGI data releasing policy No Yes beverlyflood@mac.com Beverly Flood No Host-associated Microbial Unclassified Bacteria Unclassified marine sediment 2011832074 2148183 201 7 284 4 0.0 Combined_assembly 3300006888 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom Combined Assembly of Gp0125122, Gp0125123, Gp0125658 Shell Corporation 3300006888 Combined Assembly IDBA_UD released per JGI data release policy No Yes tianakorin@googlemail.com, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Tetyana Korin, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 86542815 161621 121 0 163 1 0.0 Combined_assembly 3300007051 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom Combined Assembly of 100bp T18 (BES) Gp0123708, Gp0123962, Gp0123963 Shell Corporation 3300007051 Combined Assembly IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, nicolas.tsesmetzis@shell.com; ianhead@ncl.ac.uk Nicolas Tsesmetzis, Nicolas Tsesmetzis; Ian Head No Environmental Aquatic River Freshwater Sediment Sediment 81760464 155629 124 0 165 2 0.0 Combined_assembly 3300006467 *Microbiome Permanent Draft Coastal sediment microbial communities from Rhode Island, USA Coastal sediment microbial communities from Rhode Island, USA: Combined Assembly of Gp0121717, Gp0123912, Gp0123935 JGI facility at Oak Ridge National Laboratory, Brown University 3300006467 Combined Assembly megahit released per JGI data release policy No Yes zhang.cme@gmail.com Ying Zhang No Environmental Aquatic Coastal Marine Sediment Marine 3549344054 6298806 2236 85 3566 136 0.0 Combined_assembly 3300009302 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom Combined Assembly of De NOVO T8 (live) Tyne Sediment Benzoate Gp0125097, Gp0125101, Gp0125102 Shell Corporation 3300009302 Combined Assembly IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Ian Head, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 208245281 675272 192 2 692 4 0.0 Combined_assembly 3300027988 *Microbiome Permanent Draft Permafrost microbial communities from glacier foreland in Svalbard, Norway Combined Assembly of ML191-ML303 KOREA POLAR RESEARCH INSTITUTE 3300027988 Combined Assembly Megahit v. 1.1.3 released by JGI data releasing policy Yes Yes sarbjeet.niraula@mavs.uta.edu Sarbjeet Niraula No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 8.2 57160355 171171 142 16 308 33 0.0 Combined_assembly 3300010346 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations AD_USMOca DOE Joint Genome Institute (JGI) 3300010346 Combined Assembly released by Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 2163488845 4004252 1103 7 1782 10 SRX2157891 Unrestricted 0.0 Combined_assembly 3300037190 *Microbiome Permanent Draft St. Lawrence estuary microbiome Combined Assembly of Gp0402253, Gp0402254, Gp0402256 Genome Quebec 3300037190 Combined Assembly Megahit v. 1. released by JGI data releasing policy Yes Yes susanne.kraemer@ed.ac.uk Susanne Kraemer No Environmental Aquatic Coastal Marine Unclassified marine 1317050079 2125448 440 181 801 305 0.0 Combined_assembly 3300043331 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States EAA2017 plots 3/5 metagenome combined assembly DOE Joint Genome Institute (JGI) 3300043331 Combined Assembly MetaHipMer v. 2.0.1.v2.0.0-123-g8feeed9-Version201 released based on JGI ITS Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 40252387071 68146904 9702 224 14873 379 SRX8179616 Unrestricted 0.0 Combined_assembly 3300022818 *Microbiome Permanent Draft Alaskan permafrost microbial communities Permafrost soil microbial communities from West Dock, Prudhoe Bay oil field, Alaska, USA. Combined Assembly of Gp0294035, Gp0294036 Stanford University 3300022818 Combined Assembly SPAdes v. 3.10.0, metaSPAdes v. 10.0 and Megahit v. 1.1.1 released by JGI data releasing policy No Yes berghuis@stanford.edu Bojk Berghuis No Environmental Terrestrial Wetlands Soil Permafrost Permafrost soil 420566658 427420 105 1 100 1 0.0 Combined_assembly 3300018900 *Microbiome Permanent Draft Black Band Disease transitions Microbial communities of stony corals with Black-band disease (BBD) from Carrie Bow Cay Field Station, Belize; BBD Transitions coral #3. Combined Assembly of Gp0151266, Gp0151267, Gp0151268 University of Maryland 3300018900 Combined Assembly IDBA-Tran v1.1.1 released by JGI data releasing policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified marine 323828632 546919 36 7 193 69 0.0 Combined_assembly 3300029984 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden I_Fen_E1 coassembly DOE Joint Genome Institute (JGI) 3300029984 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 3620194229 8855565 2451 208 4107 347 SRX5281133 Unrestricted 0.0 Combined_assembly 3300029923 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden II_Fen_E1 coassembly DOE Joint Genome Institute (JGI) 3300029923 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Permafrost fen 2097831094 4827707 1629 179 2727 277 SRX5799335 Unrestricted 0.0 Combined_assembly 3300002882 *Microbiome Permanent Draft Human fecal microbial communities from healthy individuals and Crohn's disease patients at Harvard School of Public Health Assembled contigs of human gut microbial metagenome from Inflammatory Bowel Disease and Treatment (4 pooled IBD patients) Harvard University, Harvard Medical School 3300002882 Combined Assembly released per JGI data release policy No Yes xie@lanl.gov Gary Xie No Host-associated Mammals: Human Large intestine Digestive system Fecal Human fecal 48301501 88925 67 0 134 0 0.0 Combined_assembly 3300041949 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States EAA2017 plots 3/5 metatranscriptome combined assembly DOE Joint Genome Institute (JGI) 3300041949 Combined Assembly MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 2289611374 4015247 1870 654 10163 3813 SRX8186825 Unrestricted 0.0 Combined_assembly 3300021429 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Riverine microbial communities from St. Lawrence River near Massena, NY, USA. Combined Assembly of 12 SPs University of Oregon 3300021429 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 2621442611 7253328 1166 114 1990 225 0.0 Combined_assembly 3300019776 *Microbiome Permanent Draft Freshwater microbial communities from Auburn University lake, Alabama, USA Freshwater microbial communities from Auburn University lake, Alabama, USA. Combined Assembly of Gp0216759, Gp0216760, Gp0216761, Gp0216762 re-assembly 7-12-2017 HudsonAlpha Institute for Biotechnology 3300019776 Combined Assembly Megahit V1.1.1 released by JGI data releasing policy No Yes qzz0011@auburn.edu Qifan Zeng No Environmental Aquatic Lake Freshwater Unclassified freshwater 717239395 763897 181 37 182 29 0.0 Combined_assembly 3300045391 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Suillus-Soil Metagenome Co-Assembly DOE Joint Genome Institute (JGI) 3300045391 Combined Assembly HipMer v. 1.2.2.7-g023cff83 released based on JGI ITS Yes Yes colin.averill@usys.ethz.ch; jmtalbot@bu.edu Colin Averill; Jennifer Bhatnagar No Mixed, Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 21457781849 36113885 1977 277 3428 441 SRX5787951 Unrestricted 0.0 Combined_assembly 3300018474 *Microbiome Permanent Draft Black Band Disease transitions Microbial communities of stony corals with Black-band disease (BBD) from Carrie Bow Cay Field Station, Belize; BBD Transitions coral #1. Combined Assembly of Gp0149151, Gp0149152, Gp0149153 University of Maryland 3300018474 Combined Assembly IDBA-Tran v1.1.1 released by JGI data releasing policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified marine 355302095 481289 36 11 141 47 0.0 Combined_assembly 3300005639 *Microbiome Finished Sediment methylotrophic communities from Lake Washington, Seattle, Washington, USA Sediment ecosystem from Lake Washington, Seattle, Washington, USA - Combined assembly reannotation Gp0050987, Gp0050988, Gp0050989, Gp0050990, Gp0050991 DOE Joint Genome Institute (JGI) 3300005639 Combined Assembly LUCY, PGA Assembler Yes Yes milachis@u.washington.edu, lidstrom@uw.edu; milachis@u.washington.edu Lumila Chistoserdova, Mary Lidstrom; Ludmila Chistoserdova Yes 18711340 Environmental Aquatic Lentic Freshwater Sediment Sediment 211276672 396442 85 6 308 8 0.0 Combined_assembly 3300014821 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Altamaha River at Everett City, GA, Fall, 21-Oct-2015, Metagenome, Replicates ABC, Gp0208229, Gp0208230, Gp0208232 University of Oregon 3300014821 Combined Assembly Metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 146983373 462437 202 18 353 23 0.0 Combined_assembly 3300005511 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Combined assembly of arab plate scrape MF_Col (Combined Assembly) DOE Joint Genome Institute (JGI) 3300005511 Combined Assembly MEGAHIT v. 0.2.0 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Endosphere Roots Unclassified Arabidopsis root 2241371899 4871363 252 7 1531 30 SRX1991085 Unrestricted 0.0 Combined_assembly 3300008983 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom Combined Assembly of De NOVO T18 (live) Tyne Sediment Benzoate Gp0123698, Gp0123960, Gp0123961 Shell Corporation 3300008983 Combined Assembly IDBA_UD, Megahit released per JGI data release policy No Yes ianhead@ncl.ac.uk, nicolas.tsesmetzis@shell.com; ianhead@ncl.ac.uk Ian Head, Nicolas Tsesmetzis; Ian Head No Environmental Aquatic River Freshwater Sediment Sediment 265599046 913581 262 0 972 10 0.0 Combined_assembly 3300033114 *Microbiome Permanent Draft Mercury Periphyton Project Periphyton microbial communities from the St. Maurice River, Quebec, Canada. Combined Assembly of Gp0389140, Gp0389141, Gp0389142 Genome Quebec 3300033114 Combined Assembly Megahit v. 1. released by JGI data releasing policy Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic River Freshwater Periphyton Freshwater periphyton 1326038242 3181806 1462 349 2678 643 0.0 Combined_assembly 3300038951 *Microbiome Finished Deep-sea sponge tissue microbial communities from various sponge species in Cantabrian Sea, Spain Deep-sea sponge tissue microbial communities in Pachastrella ovisternata from Cantabrian Sea, Spain. Combined Assembly of Gp0459135, Gp0459082, Gp0459083 University of Liverpool 3300038951 Combined Assembly Trinity v. 2.8.4 released by JGI data releasing policy No Yes diezc08@gmail.com Cristina Diez-Vives No Host-associated Porifera Unclassified Sponge Unclassified Deep-sea sponge tissue 359616684 516936 4 0 2 0 0.0 Combined_assembly 3300028216 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Combined Assembly of Gp0060477, Gp0060375 - Site 228 with 0.1UM filter - spades J. Craig Venter Institute, J. Craig Venter Institute (JCVI) 3300028216 Combined Assembly Spades v. 3.11.1 Released per Simon Roux. Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Unclassified Marine Unclassified marine 7.29 15860072 40547 12 0 16 0 0.0 Combined_assembly 3300028549 *Microbiome Permanent Draft Sinkhole microbial mat communities from Lake Huron, Michigan, USA Sinkhole microbial mat communities from Lake Huron, Michigan, USA. Combined Assembly of SG0335, SG0343, SG0345, SG0353 University of Michigan 3300028549 Combined Assembly MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes sgrim01@gmail.com Sharon Grim No Environmental Aquatic Sinkhole Freshwater Unclassified microbial mat 1384014436 1685137 576 48 664 52 0.0 Combined_assembly 3300010344 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations AD_JPASca DOE Joint Genome Institute (JGI) 3300010344 Combined Assembly Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 1958924286 3697436 1128 10 1741 18 SRX2157906 Unrestricted 0.0 Combined_assembly 3300028929 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Seasonal metagenomes from Mississippi River University of Oregon 3300028929 Combined Assembly metaspades v. 3.11.0 released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 1642692070 6138163 1407 118 3240 264 0.0 Combined_assembly 3300009377 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Combined Assembly of Gp0137049, Gp0137046 Georgia Genomics Facility 3300009377 Combined Assembly IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 1278751441 1387207 365 7 480 10 0.0 Combined_assembly 3300007790 *Microbiome Permanent Draft Zebra blood and desert soils. Microbial community dynamics using metagenomics and cultivation Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects Norwegian Sequencing Centre (NSC) 3300007790 Combined Assembly megahit v1.0.2 released per JGI data release policy No Yes thhaverk@ibv.uio.no Thomas Haverkamp No Environmental Terrestrial Sand Soil Desert soil 1544309253 2285651 133 14 149 14 0.0 Combined_assembly 3300020949 *Microbiome Permanent Draft Sponge-associated microbial communities in Haliclona fulva from Mediterranean Sea, France Sponge-associated microbial communities in Haliclona fulva from Mediterranean Sea, France. Combined Assembly of 3 SPs IDBA-UD assembly Macrogen Inc 3300020949 Combined Assembly IDBA-UD released by JGI data releasing policy No Yes ejgb30@gmail.com Erika Garcia No Host-associated Porifera Unclassified Sponge Unclassified Sponge tissue 10405790 17107 0 4 5 9 0.0 Combined_assembly 3300009400 *Microbiome Permanent Draft Soil microbial community of the Robinson Ridge, Antarctica Soil microbial community of the Robinson Ridge, Antarctica. Combined Assembly of Gp0139162, Gp0138857, Gp0138858 University of Queensland 3300009400 Combined Assembly CLC Genomics Workbench v8 released by Mukan Ji No Yes muji9908@hotmail.com Mukan Ji No Environmental Terrestrial Unclassified Soil Unclassified soil 252306712 377066 52 1 67 1 0.0 Combined_assembly 3300010947 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities - laboratory nests. Combined Assembly of Gp0151227, Gp0151152, Gp0151149, Gp0151146 University of Luxembourg, Luxembourg Institute of Science and Technology 3300010947 Combined Assembly CLC genomics wokrbench 9.0 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 221304184 702611 1 2 4 30 0.0 Combined_assembly 3300010338 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations AD_JPMRca DOE Joint Genome Institute (JGI) 3300010338 Combined Assembly Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 1474249973 2869728 884 5 1428 13 SRX2157909 Unrestricted 0.0 Combined_assembly 3300027990 *Microbiome Permanent Draft Permafrost microbial communities from glacier foreland in Svalbard, Norway Combined Assembly of ML120-ML132 KOREA POLAR RESEARCH INSTITUTE 3300027990 Combined Assembly Megahit v. 1.1.3 released by JGI data releasing policy Yes Yes sarbjeet.niraula@mavs.uta.edu Sarbjeet Niraula No Environmental Terrestrial Unclassified Soil Permafrost Permafrost 7.9 119291899 352267 276 51 753 84 0.0 Combined_assembly 3300030688 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden II_Bog_N2 coassembly DOE Joint Genome Institute (JGI) 3300030688 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 2889455149 5361677 1023 231 1483 363 SRX5355826 Unrestricted 0.0 Combined_assembly 3300016655 *Microbiome Permanent Draft Marine microbial communities from Antarctic Lakes and Southern Ocean Marine microbial communities from Ace Lake, Antarctica - Combined Assembly of Gp0060477, Gp0060375: dna-ANTRC228_01_hybrid_final.fasta J. Craig Venter Institute, J. Craig Venter Institute (JCVI) 3300016655 Combined Assembly Celera WGS Assembler v5.3 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au; tbreddy@lbl.gov Rick Cavicchioli; TBK Reddy Yes 21124488, 32772914 Environmental Aquatic Unclassified Marine Unclassified marine 7.29 23225104 68225 33 0 53 0 0.0 Combined_assembly 3300006837 *Microbiome Permanent Draft Syntrophic microbial communities from an anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom Combined Assembly of Gp0125103, Gp0125104, Gp0125105 Shell Corporation 3300006837 Combined Assembly IDBA_UD released per JGI data release policy No Yes tianakorin@googlemail.com, ianhead@ncl.ac.uk; tianakorin@googlemail.com; nicolas.tsesmetzis@shell.com Tetyana Korin, Ian Head; Tetyana Korin; Nicolas Tsesmetzis No Environmental Aquatic River Freshwater Sediment Sediment 113873044 216769 109 0 176 1 0.0 Combined_assembly 3300031119 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Coassembly of Cow X and Y Corn Stover DOE Joint Genome Institute (JGI) 3300031119 Combined Assembly megahit v. 0.2.0 No Yes mhess@lbl.gov, mhess@ucdavis.edu Hess, Matthias, Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 1736297801 3832358 342 3579 2002 7629 SRX5780594 Unrestricted 0.0 Combined_assembly 3300024523 *Microbiome Finished Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Sorghum rhizosphere and soil microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA. Combined Assembly of 8 SPs QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300024523 Combined Assembly MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes hwipf@berkeley.edu; colemanderr@gmail.com Edi Wipf; Devin Coleman-Derr No Mixed, Host-associated Plants Rhizosphere Roots Unclassified sorghum rhizosphere 113060420 221433 1403 2571 7175 7387 0.0 Combined_assembly 3300011008 *Microbiome Permanent Draft Rumen microbial communities from healthy moose, Palmer, Alaska Rumen microbial communities from healthy moose, Palmer, Alaska. Combined Assembly of Gp0161001, Gp0160600, Gp0160599, Gp0160598 Ohio State University 3300011008 Combined Assembly IDBA-UD released by Lindsey Solden No Yes solden.2@osu.edu Lindsey Solden Yes 30356154 Host-associated Mammals Stomach Digestive system Rumen Moose rumen 1315133200 1775780 1341 36 1824 46 0.0 Combined_assembly 3300015055 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Riverine microbial communities from Columbia River near Beaver Army Terminal, OR, USA, metaT, Fall, Replicates ABC, Gp0208261, Gp0208262, Gp0208263 University of Oregon 3300015055 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 5224501 20338 62 70 158 263 0.0 Combined_assembly 3300022555 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Alinen_combined assembly DOE Joint Genome Institute (JGI) 3300022555 Combined Assembly Yes Yes eaeloefadrosh@lbl.gov; rstepanauskas@bigelow.org; sari.peura@slu.se; jkjarett@lbl.gov Emiley Eloe-Fadrosh; Ramunas Stepanauskas; Sari Peura; Jessica Jarett No Environmental Aquatic Lake Freshwater Unclassified freshwater lake hypolimnion 2030625171 3432046 985 35 1573 59 SRX2839451 Unrestricted 0.0 Combined_assembly 3300035034 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Combined Assembly of Antarctic Hypersaline Lakes (64 datasets) DOE Joint Genome Institute (JGI) 3300035034 Combined Assembly Megahit v. 1.1.1 released by JGI data releasing policy Yes Yes r.cavicchioli@unsw.edu.au; m.allen@unsw.edu.au Rick Cavicchioli; Michelle Allen Yes 24082106 Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline 1399731867 1664289 255 28 301 38 0.0 Combined_assembly 3300010311 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations AD_JPTRca DOE Joint Genome Institute (JGI) 3300010311 Combined Assembly Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 451551953 771015 397 3 581 1 SRX2338995 Unrestricted 0.0 Combined_assembly 3300017527 *Microbiome Permanent Draft Investigating the Microbiome of Thiomargarita & Thiopilula Thiopilula spp. associated microbial communities within a diatom frustule from marine sediment, the Benguela Current, Namibia. Combined Assembly of Gp0212705, Gp0212706 University of Minnesota - Twin Cities 3300017527 Combined Assembly MEGAHIT v1.0.6.1 released by JGI data releasing policy No Yes beverlyflood@mac.com Beverly Flood No Host-associated Microbial Unclassified Bacteria Unclassified marine sediments 930986618 1097610 93 0 153 0 0.0 Combined_assembly 3300002347 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 deep-072012 (NGEE Surface samples 415 (1, 2, 3 deep-072012) AP id is 1030520, ASSEMBLY_DATE=20131219) DOE Joint Genome Institute (JGI) 3300002347 Combined Assembly Released by Nikos bc they passed the 6 months embargo date Yes Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 197840476 519668 307 15 563 45 SRX1987460 0.0 Combined_assembly 3300004156 *Microbiome Permanent Draft Soil microbial communities from Arlington Agricultural Research Station in Wisconsin and Kellogg Biological Station in Michigan, replicating the bioenergy cropping systems trials (BCSTs) Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1 DOE Joint Genome Institute (JGI) 3300004156 Combined Assembly MEGAHIT v. 0.2.0 Yes Yes dsduncan@wisc.edu David Duncan No Environmental Terrestrial Agricultural land Soil Unclassified Soil 7249242585 21637105 2707 76 5908 212 SRX1990506 Unrestricted 0.0 Combined_assembly 3300007044 *Microbiome Permanent Draft Methanogenic Incubations using Athabaskan Oil Sands from Alberta Canada Combined Assembly of Gp0125668, Gp0125720, Gp0125669 Shell Corporation 3300007044 Combined Assembly IDBA_UD released per JGI data release policy No Yes nicolas.tsesmetzis@shell.com, ianhead@ncl.ac.uk; nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis, Ian Head; Nicolas Tsesmetzis No Environmental Terrestrial Unclassified Oil reservoir Unclassified Oil Sands 90658098 133186 100 0 128 0 0.0 Combined_assembly 3300029939 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden I_Bog_E3 coassembly DOE Joint Genome Institute (JGI) 3300029939 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 2225967241 4510748 887 158 1323 253 SRX5799164 Unrestricted 0.0 Combined_assembly 3300014584 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Altamaha River at Everett City, GA, Spring, 22-Apr-2015, Metagenome, Replicates ABC, Gp0208219, Gp0208221, Gp0208223 University of Oregon 3300014584 Combined Assembly Metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 4955080 20154 22 7 30 5 0.0 Combined_assembly 3300017831 *Microbiome Permanent Draft Acidic sediment microbial communities from Fankou mine tailing, Shaoguan, Guangdong, China Acidic sediment microbial communities from Fankou mine tailing, Shaoguan, Guangdong, China. Combined Assembly of 5 sequencing projects Beijing Novogene Bioinformatics Technology Co., Ltd 3300017831 Combined Assembly SPAdes v3.9.0 released by JGI data releasing policy Yes Yes luozhh7@mail2.sysu.edu.cn zhenhao luo No Environmental Aquatic Unclassified Sediment Unclassified acidic sediment 159532599 260277 118 7 201 14 0.0 Combined_assembly 3300031117 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Coassembly of Cow X Rumen Fluid DOE Joint Genome Institute (JGI) 3300031117 Combined Assembly megahit v. 0.2.0 No Yes mhess@lbl.gov, mhess@ucdavis.edu Hess, Matthias, Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 1279496737 3013998 1938 3124 7705 6765 SRX5780727 Unrestricted 0.0 Combined_assembly 3300050338 *Microbiome Draft Lake microbial communities from Canada Freshwater microbial communities from the Pacific Maritime Ecozone, Canada. Combined Assembly of 30 SPs Genome Quebec 3300050338 Combined Assembly Megahit v. 1.2.7. released by Vera Onana Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 11820545254 19208819 2109 742 3255 1112 0.0 Combined_assembly 3300008158 *Microbiome Permanent Draft Marine eukaryotic communities from various locations to study complex ecological interactions Minidiscus trioculatus and Planctomycetes bacterium Co-assembly DOE Joint Genome Institute (JGI) 3300008158 Combined Assembly spades v. 3.6.2 No Yes azworden@mbari.org, azworden@mbari.org; twoyke@lbl.gov Alexandra Worden, Alexandra Worden; Tanja Woyke No Environmental Aquatic Unclassified Marine Unclassified Marine 54320235 50710 2 1 1 1 Unrestricted 0.0 Combined_assembly 3300029914 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden III_Bog_E2 coassembly DOE Joint Genome Institute (JGI) 3300029914 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Wetlands Soil Peat bog 2484693065 4673838 921 170 1446 230 SRX5356671 Unrestricted 0.0 Combined_assembly 3300010161 *Microbiome Permanent Draft Insights gained from metagenomic shotgun sequencing of apple fruit epiphytic microbiota Combined Assembly of Pinova apple microbial communities from Belgium DNAVision 3300010161 Combined Assembly velvet released per JGI data release policy No Yes sebastien.massart@ulg.ac.be Sebastien Massart No Host-associated Plants Carposphere Phyllosphere Unclassified Phyllosphere 313044027 509073 50 45 73 73 0.0 Combined_assembly 3300015369 *Microbiome Permanent Draft Hoatzin crop microbial communities from Cojedes, Venezuela Hoatzin crop microbial communities from Cojedes, Venezuel. Combined Assembly of Gp0051906, Gp0051904, Gp0051908 DOE Joint Genome Institute (JGI) 3300015369 Combined Assembly Megahit v1.1.1 released per Simon -- IMGSUPP2953 No Yes maria.dominguez1@upr.edu; fgodoyvitorino@gmail.com Maria Gloria Dominguez-Bello; Filipa Godoy Vitorino No Host-associated Birds Esophagus Digestive system Crop Hoatzin crop 873952982 836512 40 1 20 1 0.0 Combined_assembly 3300031474 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Fir Coassembly Site 11 - Champenoux / Amance forest DOE Joint Genome Institute (JGI) 3300031474 Combined Assembly MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr; bjorn.lindahl@slu.se Francis M. Martin; Bjorn D. Lindahl No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 7800898718 17503204 2174 2561 57608 34647 SRX2718661 Unrestricted 0.0 Combined_assembly 3300017461 *Microbiome Permanent Draft Yellowstone National Park Obsidian Pool microbial communities Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA - Obsidian 5. Combined Assembly of Gp0212721, Gp0212722 Stanford University 3300017461 Combined Assembly SPAdes, metaSPAdes v10.0 and Megahit published in PNAS (release before publication date) No Yes berghuis@stanford.edu Bojk Berghuis No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hotspring sediment 40788226 43069 13 0 9 0 0.0 Combined_assembly 3300038386 *Microbiome Permanent Draft Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil Combined Assembly of Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil DOE Joint Genome Institute (JGI) 3300038386 Combined Assembly MEGAHIT v. 1.2.7 Released on PI's request No Yes rafaelsoliv@gmail.com Rafael Oliveira Yes 31366912 Environmental Terrestrial Unclassified Rock-dwelling (subaerial biofilms) Unclassified exposed rock 2107126167 2798050 661 61 1046 84 SRX4020650 0.0 Combined_assembly 3300028452 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Goat Fecal Pellet Co-assembly of all samples treated with chloramphenicol from Gen5 and Gen10 DOE Joint Genome Institute (JGI) 3300028452 Combined Assembly No Yes momalley@engineering.ucsb.edu; xpeng@seoe.sc.edu Michelle O'Malley; Xuefeng (Nick) Peng No Host-associated Mammals Large intestine Digestive system Fecal feces 586074121 993682 210 99 274 167 Unrestricted 0.0 Combined_assembly 3300030743 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly DOE Joint Genome Institute (JGI) 3300030743 Combined Assembly MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr; fmartin@nancy.inra.fr Francis M. Martin; Francis M. MARTIN No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 5162287392 10778348 534 438 6347 2243 SRX4011205 Unrestricted 0.0 Combined_assembly 3300013233 *Microbiome Permanent Draft Marine microbial mat from Mariana Arc and Backarc, Pacific Ocean Combined Assembly of Gp0198154, Gp0198156, Gp0198157, Gp0198161 Western Washington University 3300013233 Combined Assembly IDBA-UD v1.1.1 released by JGI data releasing policy No Yes cmoyer@hydro.biol.wwu.edu Craig Moyer No Environmental Aquatic Hydrothermal vents Marine Microbial mats Marine 1827702200 3129593 1398 27 2215 41 0.0 Combined_assembly 3300030618 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden II_Palsa_E3 coassembly DOE Joint Genome Institute (JGI) 3300030618 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 3911848083 7939522 1312 242 1980 390 SRX5355865 Unrestricted 0.0 Combined_assembly 3300004080 *Microbiome Permanent Draft Bog forest soil microbial communities from Calvert Island, British Columbia, Canada Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3 DOE Joint Genome Institute (JGI) 3300004080 Combined Assembly MEGAHIT v. 0.2.0 Yes Yes wmohn@interchange.ubc.ca William Mohn No Environmental Aquatic Wetlands Freshwater Bog Bog forest soil 3334146399 9915682 1205 304 2312 794 SRX2575212 Unrestricted 0.0 Combined_assembly 3300009129 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Combined Assembly of Gp0139513, Gp0139514 Georgia Genomics Facility 3300009129 Combined Assembly IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 573762845 714727 277 145 352 194 0.0 Combined_assembly 3300020597 *Microbiome Permanent Draft Sponge Microbiome Project Reference Genomes Sponge tissue associated microbial communities from Hexaddella dedritifera. Combined Assembly of Gp0220756, Gp0220758 Woods Hole Oceanographic Institution 3300020597 Combined Assembly IDBAUD released by JGI data releasing policy Yes Yes shan.zhang@student.unsw.edu.au Shan Zhang No Host-associated Porifera Unclassified Sponge Unclassified Sponge tissue 2549570 2754 1 0 1 0 0.0 Combined_assembly 3300040739 *Microbiome Permanent Draft Lab enriched sediment microbial communities from Bremen, Germany Combined Assembly of Lab enriched freshwater sediment microbial communities from Bremen, Germany CeGaT, University of Tuebingen 3300040739 Combined Assembly SPAdes v. 3.13.1 released by Yu-Ming Huang No Yes yu-ming.huang@outlook.com; sara.kleindienst@uni-tuebingen.de Yu-Ming Huang; Sara Kleindienst Yes 34020935 Engineered Lab enrichment Anaerobic media Defined media Unclassified Freshwater sediment 18173609 18050 6 0 6 0 0.0 Combined_assembly 3300015073 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Riverine microbial communities from Altamaha River at Everett City, Fall, Replicates ABC, Gp0208294, Gp0208295, Gp0208296 University of Oregon 3300015073 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 45345732 162499 125 230 343 929 0.0 Combined_assembly 3300010357 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations AD_USSTca DOE Joint Genome Institute (JGI) 3300010357 Combined Assembly released by Yes Yes wtliu@illinois.edu; nobu2@illinois.edu Wen-Tso Liu; Masaru Nobu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 3827249990 8244173 1557 10 2684 30 SRX2338906 Unrestricted 0.0 Combined_assembly 3300042976 *Microbiome Draft Aquatic microalgae cultures microbial communities from IPM, Hamburg, Germany Combined Assembly of Microalgae culture of Scenedesmus acuminatus (Gp0542793, Gp0542794, Gp0542795) HPI Heinrich-Pette-Institut 3300042976 Combined Assembly metaSpades v. 3.1 released by JGI data releasing policy No Yes ines.krohn@uni-hamburg.de Ines KROHN No Host-associated Algae Unclassified Microalgae Unclassified Microalgae 108602007 182924 6 1 12 1 0.0 Combined_assembly 3300010965 *Microbiome Permanent Draft Microbial communities from Lake Cadagno chemocline, Switzerland. Microbial communities from Lake Cadagno chemocline, Switzerland. Combined Assembly of Gp0156211, Gp0156621 Max Planck Institute for Marine Microbiology, Max Planck Institute for Plant Breeding Research 3300010965 Combined Assembly SPAdes released by Petra Pjevac No Yes pjevac@microbial-ecology.net Petra Pjevac No Environmental Aquatic Lake Freshwater Unclassified Lake chemocline 333708487 376830 82 16 100 17 0.0 Combined_assembly 3300031964 *Microbiome Permanent Draft Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden III_Palsa_N3 coassembly DOE Joint Genome Institute (JGI) 3300031964 Combined Assembly spades v. 3.12.0 Yes Yes saleska@email.arizona.edu Scott Saleska No Environmental Terrestrial Palsa Soil Peat permafrost palsa 4001244624 7727972 1068 167 1569 274 SRX6409914 Unrestricted 0.0 Combined_assembly 3300009127 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Combined Assembly of Gp0137036, Gp0137038 Georgia Genomics Facility 3300009127 Combined Assembly IDBA 1.1.1 released per JGI data release policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 768501348 931647 401 1 540 0 0.0 Combined_assembly 3300017698 *Microbiome Finished Metagenome analysis of microbiome from Petroleum hydrocarbon column enrichment Hydrocarbon degrading bacterial communities from column bioreactor, Berkeley, California, USA. Combined Assembly of 12 sequencing projects Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300017698 Combined Assembly MEGAHIT released by JGI data releasing policy No Yes jdcoates@berkeley.edu; pravin@berkeley.edu John Coates; Pravin Malla Shrestha No Engineered Bioreactor Unclassified Anaerobic Unclassified Column bioreactor 7.6 643716432 1031530 751 4 1086 11 0.0 Combined_assembly 3300015066 *Microbiome Permanent Draft Riverine microbial communities from big rivers of the USA Combined Assembly of Riverine microbial communities from Mississippi River at Belle Chasse, metaT, Winter, Replicates ABC, Gp0208309, Gp0208310, Gp0208311 University of Oregon 3300015066 Combined Assembly metaspades released by JGI data releasing policy No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Plankton freshwater 33534389 126245 217 206 497 611 0.0 Combined_assembly 3300028241 *Microbiome Permanent Draft Anaerobic reactors microbiome study Activated sludge microbial communities from lab. scaled anaerobic digester in Belvaux, Luxembourg. Combined Assembly of 20 SPs University of Luxembourg 3300028241 Combined Assembly CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Engineered Bioreactor Unclassified Anaerobic Unclassified activated sludge 2117216370 2484943 334 1 354 2 0.0 Combined_assembly 3300041956 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States EAA2017 plot 1 metagenome combined assembly DOE Joint Genome Institute (JGI) 3300041956 Combined Assembly metaspades v. 3.14.1 released based on JGI ITS Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 2561070539 3939392 598 4 932 9 SRX8179261 Unrestricted 0.0 Combined_assembly 3300022230 *Microbiome Permanent Draft Bioreactor liquid microbial communities from lab scale biogas reactor, Copenhagen, Denmark Bioreactor liquid microbial communities from lab scale biogas reactor, Copenhagen, Denmark. Combined Assembly of 16 SPs University of New South Wales 3300022230 Combined Assembly CLC working bench released by JGI data releasing policy No Yes xinzh@env.dtu.dk Xinyu Zhu No Engineered Lab enrichment Anaerobic media Defined media Unclassified Bioreactor liquid 142477944 158640 82 0 112 0 0.0 Combined_assembly 3300012949 *Microbiome Permanent Draft Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA Switchgrass enrichment cultures co-assembly DOE Joint Genome Institute (JGI) 3300012949 Combined Assembly MEGAHIT v. 1.0.6 Yes Yes Steve.Brown@lanzatech.com Steven Brown Yes 30202438 Engineered Bioreactor Anaerobic Semi-continuous Digestate Switchgrass degrading 1663430965 4564764 9426 12 17637 27 SRX3289993 Unrestricted 0.0 Combined_assembly 2593339174 Bacteria Permanent Draft Single cell genome sequencing of biomineralizing bacteria Coassembly_Zeta_C09_L23 DOE Joint Genome Institute (JGI) 2593339174 Combined Assembly No Yes fielde14@ecu.edu, demerson@bigelow.org; fielde14@ecu.edu Erin Field, David Emerson; Erin Field No Mixed 2489259 2493 4 0 7 0 Unrestricted Combined_assembly 2593339175 Bacteria Permanent Draft Single cell genome sequencing of biomineralizing bacteria Coassembly_Zeta_B05_G19 Bigelow Laboratory Single Cell Genomics Center (SCGC), DOE Joint Genome Institute (JGI) 2593339175 Combined Assembly No Yes fielde14@ecu.edu, fielde14@ecu.edu; demerson@bigelow.org Erin Field, Erin Field; David Emerson No Mixed, Environmental Aquatic Unclassified Marine Unclassified 6.5-7.5 1338653 1436 2 0 2 0 Unrestricted Combined_assembly 3300022051 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - Candidate_division_AC1_(TA06)_bacterium_AG-188-C17 DOE Joint Genome Institute (JGI) 3300022051 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater, Deep subsurface Drilled well/Borehole groundwater -28.317 27.772 1260087 1186 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300015844 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Omnitrophica bacterium SCGC_AG-657-P13 DOE Joint Genome Institute (JGI) 3300015844 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 292013 350 1 0 0 0 SRX3601918 Unrestricted 0.0 single_particle_sort 3300023770 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.G10 DOE Joint Genome Institute (JGI) 3300023770 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 220780 248 1 0 1 0 SRX4524843 Unrestricted 0.0 single_particle_sort 3300024099 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.F16 DOE Joint Genome Institute (JGI) 3300024099 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1433797 1599 2 0 1 0 SRX4519582 Unrestricted 0.0 single_particle_sort 3300051793 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_C7_SVS DOE Joint Genome Institute (JGI) 3300051793 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 24994 39 0 0 0 0 Restricted 0.0 single_particle_sort 3300033371 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.M4 DOE Joint Genome Institute (JGI) 3300033371 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 767949 746 1 0 1 0 SRX7627177 Unrestricted 0.0 single_particle_sort 3300016152 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-E09 DOE Joint Genome Institute (JGI) 3300016152 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 601883 660 0 0 1 0 SRX3563243 Unrestricted 0.0 single_particle_sort 3300038203 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.H18 DOE Joint Genome Institute (JGI) 3300038203 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 597863 757 1 0 1 0 SRX9411021 Unrestricted 0.0 single_particle_sort 3300033878 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.F21 DOE Joint Genome Institute (JGI) 3300033878 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 293004 342 0 0 0 0 SRX7626808 Unrestricted 0.0 single_particle_sort 3300015644 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Gongxiaoshe hot spring sediment, Tengchong, China - GXS.2.2014 1201 MDM2 GXS p2 16S.N10.double-seq DOE Joint Genome Institute (JGI) 3300015644 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 25.4401 98.4408 576083 648 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300041220 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.I8 DOE Joint Genome Institute (JGI) 3300041220 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 699796 862 0 0 0 0 SRX9652975 Unrestricted 0.0 single_particle_sort 3300015954 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in well PM-3-1, Nye County Groundwater Evaluation Oasis Valley, Nevada, USA - Peregrinibacteria_bacterium_SCGC_AG-293-E21 DOE Joint Genome Institute (JGI) 3300015954 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole Groundwater 36.96 -116.72 7.18 347287 417 0 0 1 0 SRX3781718 Unrestricted 0.0 single_particle_sort 3300050988 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_P16_SVS DOE Joint Genome Institute (JGI) 3300050988 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 284660 312 0 0 0 0 Restricted 0.0 single_particle_sort 3300015531 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-F20 DOE Joint Genome Institute (JGI) 3300015531 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 400077 482 0 0 1 0 SRX3549456 Unrestricted 0.0 single_particle_sort 3300014474 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.F11 DOE Joint Genome Institute (JGI) 3300014474 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1715572 1635 1 0 0 0 SRX3366899 Unrestricted 0.0 single_particle_sort 3300016052 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-C10 DOE Joint Genome Institute (JGI) 3300016052 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 429199 536 0 0 0 0 SRX3563199 Unrestricted 0.0 single_particle_sort 3300013888 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.G13 DOE Joint Genome Institute (JGI) 3300013888 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 379296 471 1 0 1 0 SRX3366943 Unrestricted 0.0 single_particle_sort 3300033678 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P9_K19 DOE Joint Genome Institute (JGI) 3300033678 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 8294 9 0 0 0 0 SRX7531265 Unrestricted 0.0 single_particle_sort 3300023142 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.N15 DOE Joint Genome Institute (JGI) 3300023142 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 780544 850 1 0 1 0 SRX4510000 Unrestricted 0.0 single_particle_sort 3300016116 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Omnitrophica bacterium SCGC_AG-657-C08 DOE Joint Genome Institute (JGI) 3300016116 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 520825 607 1 0 1 0 SRX3594347 Unrestricted 0.0 single_particle_sort 3300041235 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.J9 DOE Joint Genome Institute (JGI) 3300041235 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 719498 771 0 0 0 0 SRX9523932 Unrestricted 0.0 single_particle_sort 3300038236 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.I5 DOE Joint Genome Institute (JGI) 3300038236 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 322816 424 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300019384 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent microbial mat, Guaymas Basin, Mexico - 3C_4868_08_16 DOE Joint Genome Institute (JGI) 3300019384 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.001 -110.5999 135757 221 0 0 0 0 SRX3973869 Unrestricted 0.0 single_particle_sort 3300041267 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.2.G5 DOE Joint Genome Institute (JGI) 3300041267 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 413809 456 0 0 0 0 SRX9667815 Unrestricted 0.0 single_particle_sort 3300016561 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Sorted cell/s from deep shales in West Virginia, USA - MahaSR_06_F3 DOE Joint Genome Institute (JGI) 3300016561 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back deep subsurface 39.6017 -79.9761 1345082 1462 0 0 1 0 SRX3577096 Unrestricted 0.0 single_particle_sort 3300016016 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-582-F13 DOE Joint Genome Institute (JGI) 3300016016 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 441660 486 0 0 0 0 SRX3580201 Unrestricted 0.0 single_particle_sort 3300015007 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.E12 DOE Joint Genome Institute (JGI) 3300015007 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 274947 341 1 0 1 0 Restricted 0.0 single_particle_sort 3300018311 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_K10 DOE Joint Genome Institute (JGI) 3300018311 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 1263356 1203 1 0 1 0 SRX4647019 Unrestricted 0.0 single_particle_sort 3300016380 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - GN04 bacterium SCGC_AG-578-C14 DOE Joint Genome Institute (JGI) 3300016380 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 947876 899 1 0 2 0 SRX3579180 Unrestricted 0.0 single_particle_sort 3300041213 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.L6 DOE Joint Genome Institute (JGI) 3300041213 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2534908 2461 0 0 1 0 SRX9652572 Unrestricted 0.0 single_particle_sort 3300033777 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P4_B22 DOE Joint Genome Institute (JGI) 3300033777 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 6973 10 0 0 0 0 SRX7525379 Unrestricted 0.0 single_particle_sort 3300014036 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.G10 DOE Joint Genome Institute (JGI) 3300014036 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1973796 1837 1 0 1 0 SRX3366942 Unrestricted 0.0 single_particle_sort 3300050676 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_L11_SVS DOE Joint Genome Institute (JGI) 3300050676 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 62957 98 0 0 0 0 Restricted 0.0 single_particle_sort 3300050843 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_I5_SVS DOE Joint Genome Institute (JGI) 3300050843 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 33698 39 0 0 0 0 Restricted 0.0 single_particle_sort 3300015107 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-L18 DOE Joint Genome Institute (JGI) 3300015107 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 342882 392 1 0 1 0 SRX3578337 Unrestricted 0.0 single_particle_sort 3300033471 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.N11 DOE Joint Genome Institute (JGI) 3300033471 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 774306 853 1 0 2 0 SRX7630341 Unrestricted 0.0 single_particle_sort 3300016582 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Latescibacteria_bacterium_SCGC_AG-636-N02 DOE Joint Genome Institute (JGI) 3300016582 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Sediment Freshwater Unclassified Freshwater sediment 53.7598 107.9791 7.32 1908287 1839 0 0 0 0 SRX3784584 Unrestricted 0.0 single_particle_sort 3300049969 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_M14_SVS DOE Joint Genome Institute (JGI) 3300049969 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 95288 130 0 0 0 0 Restricted 0.0 single_particle_sort 3300050953 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-956-M16 DOE Joint Genome Institute (JGI) 3300050953 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1197303 -42.124435 1290214 1378 1 0 1 0 Restricted 0.0 single_particle_sort 3300050876 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_C8_SVS DOE Joint Genome Institute (JGI) 3300050876 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 97170 171 0 0 0 0 Restricted 0.0 single_particle_sort 3300022097 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.C4 DOE Joint Genome Institute (JGI) 3300022097 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1438629 1357 1 0 1 0 SRX3998111 Unrestricted 0.0 single_particle_sort 3300037895 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .F8 DOE Joint Genome Institute (JGI) 3300037895 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 1010281 1162 0 0 1 0 SRX9411529 Unrestricted 0.0 single_particle_sort 3300016105 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_B4 DOE Joint Genome Institute (JGI) 3300016105 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 540570 584 1 0 0 0 SRX4066387 Unrestricted 0.0 single_particle_sort 3300024845 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-I10 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024845 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 331117 402 0 0 0 0 0.0 single_particle_sort 3300019484 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-274-C04 DOE Joint Genome Institute (JGI) 3300019484 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 150880 174 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035894 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.C14 DOE Joint Genome Institute (JGI) 3300035894 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 893014 1040 0 0 0 0 SRX8898327 Unrestricted 0.0 single_particle_sort 3300036609 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.F9 DOE Joint Genome Institute (JGI) 3300036609 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 1574638 1592 0 0 0 0 SRX8902556 Unrestricted 0.0 single_particle_sort 3300050771 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_O8_SVS DOE Joint Genome Institute (JGI) 3300050771 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 45738 64 0 0 0 0 Restricted 0.0 single_particle_sort 3300034469 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.D20 DOE Joint Genome Institute (JGI) 3300034469 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 439674 481 1 0 1 0 SRX8389561 Unrestricted 0.0 single_particle_sort 3300022626 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Caulobacterales bacterium JGI PCGPRD042217_31 DOE Joint Genome Institute (JGI) 3300022626 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 965525 1168 0 0 1 0 SRX4415250 Unrestricted 0.0 single_particle_sort 3300024645 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-J20 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024645 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 73674 79 0 0 0 0 0.0 single_particle_sort 3300033295 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.E12 DOE Joint Genome Institute (JGI) 3300033295 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 519075 504 0 0 0 0 SRX7627733 Unrestricted 0.0 single_particle_sort 3300016005 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-N06 DOE Joint Genome Institute (JGI) 3300016005 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 407657 474 1 0 0 0 SRX3563031 Unrestricted 0.0 single_particle_sort 3300033459 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.M4 DOE Joint Genome Institute (JGI) 3300033459 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 1217194 1215 1 0 2 0 SRX7630279 Unrestricted 0.0 single_particle_sort 3300023965 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.F13 DOE Joint Genome Institute (JGI) 3300023965 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1391559 1556 0 0 0 0 SRX4519545 Unrestricted 0.0 single_particle_sort 3300015867 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Gemmatamonidetes bacterium SCGC_AG-582-J15 DOE Joint Genome Institute (JGI) 3300015867 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 198440 237 1 0 1 0 SRX3580006 Unrestricted 0.0 single_particle_sort 3300015635 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from a deep sea mud volcano in Anaximander Mountains, Eastern Mediterranean Sea - B17.2.2014 11 14 MDM2 B17 p2 16S.N14.double-peak DOE Joint Genome Institute (JGI) 3300015635 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Mud volcano Marine Unclassified Deep sea volcano 35.7369 30.475 402790 435 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300051155 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_F22_SVS DOE Joint Genome Institute (JGI) 3300051155 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 28955 29 0 0 0 0 Restricted 0.0 single_particle_sort 3300024077 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.K9 DOE Joint Genome Institute (JGI) 3300024077 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 667977 724 1 0 0 0 SRX4523917 Unrestricted 0.0 single_particle_sort 3300016436 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_D9 DOE Joint Genome Institute (JGI) 3300016436 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1212593 1195 1 0 1 0 SRX4066379 Unrestricted 0.0 single_particle_sort 3300023937 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.05.G4 DOE Joint Genome Institute (JGI) 3300023937 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 922977 1190 0 0 0 0 SRX4390953 Unrestricted 0.0 single_particle_sort 3300015835 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-G15 DOE Joint Genome Institute (JGI) 3300015835 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 258266 333 0 0 0 0 SRX3551328 Unrestricted 0.0 single_particle_sort 3300015667 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from a deep sea mud volcano in Anaximander Mountains, Eastern Mediterranean Sea - B25.2.2014 1114 MDM2 B25 p2 16S.M17.double-seq DOE Joint Genome Institute (JGI) 3300015667 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Mud volcano Marine Unclassified Deep sea volcano 35.3338 30.2722 1152623 1182 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300026614 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-E11 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026614 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 109422 141 0 0 0 0 0.0 single_particle_sort 3300019911 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-M8 DOE Joint Genome Institute (JGI) 3300019911 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 456987 539 1 0 0 0 SRX4663403 Unrestricted 0.0 single_particle_sort 3300015820 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-M07 DOE Joint Genome Institute (JGI) 3300015820 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 281476 308 0 0 0 0 SRX3551355 Unrestricted 0.0 single_particle_sort 3300035961 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.K20 DOE Joint Genome Institute (JGI) 3300035961 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1169980 1218 1 0 1 0 SRX8862688 Unrestricted 0.0 single_particle_sort 3300018270 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-G03 DOE Joint Genome Institute (JGI) 3300018270 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 991316 920 0 0 0 0 SRX3981077 Unrestricted 0.0 single_particle_sort 3300015466 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-G09 DOE Joint Genome Institute (JGI) 3300015466 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 160204 200 0 0 0 0 SRX3549987 Unrestricted 0.0 single_particle_sort 3300016403 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - NC10_bacterium_SCGC_AG-636-A19 DOE Joint Genome Institute (JGI) 3300016403 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 993840 1028 1 0 1 0 SRX3784418 Unrestricted 0.0 single_particle_sort 3300015620 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from a deep sea mud volcano in Anaximander Mountains, Eastern Mediterranean Sea - B17.1.2014-1113 MDM2 B17 p1 16S.H11.double-seq DOE Joint Genome Institute (JGI) 3300015620 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Mud volcano Marine Unclassified Deep sea volcano 35.7369 30.475 139148 149 1 0 2 0 Unrestricted 0.0 single_particle_sort 3300033223 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.H22 DOE Joint Genome Institute (JGI) 3300033223 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 475680 482 1 0 1 0 SRX7630270 Unrestricted 0.0 single_particle_sort 3300014405 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.B10 DOE Joint Genome Institute (JGI) 3300014405 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 638010 644 0 0 0 0 SRX3368420 Unrestricted 0.0 single_particle_sort 3300041244 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.C4 DOE Joint Genome Institute (JGI) 3300041244 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2307069 2257 1 0 0 0 SRX9650199 Unrestricted 0.0 single_particle_sort 3300036069 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_L8 DOE Joint Genome Institute (JGI) 3300036069 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 156817 205 0 0 0 0 SRX10046097 Unrestricted 0.0 single_particle_sort 3300050759 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_L21_SVS DOE Joint Genome Institute (JGI) 3300050759 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 20348 27 0 0 0 0 Restricted 0.0 single_particle_sort 3300050814 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_P10_SVS DOE Joint Genome Institute (JGI) 3300050814 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 85217 137 0 0 0 0 Restricted 0.0 single_particle_sort 3300015768 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-3-I22 DOE Joint Genome Institute (JGI) 3300015768 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 179936 219 0 0 0 0 SRX3553125 Unrestricted 0.0 single_particle_sort 3300023594 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.H8 DOE Joint Genome Institute (JGI) 3300023594 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 573298 494 0 0 0 0 SRX4547991 Unrestricted 0.0 single_particle_sort 3300010739 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_12_SCGC_AG-138-F18 DOE Joint Genome Institute (JGI) 3300010739 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 128917 137 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035982 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.L4 DOE Joint Genome Institute (JGI) 3300035982 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 1260135 1289 0 0 0 0 SRX8854176 Unrestricted 0.0 single_particle_sort 3300016174 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-E09 DOE Joint Genome Institute (JGI) 3300016174 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 595391 699 1 0 1 0 SRX3540067 Unrestricted 0.0 single_particle_sort 3300021673 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.M19 DOE Joint Genome Institute (JGI) 3300021673 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 204905 240 0 0 0 0 SRX4007662 Unrestricted 0.0 single_particle_sort 3300033799 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.C4 DOE Joint Genome Institute (JGI) 3300033799 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 333015 257 0 0 0 0 SRX7626128 Unrestricted 0.0 single_particle_sort 3300022248 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Acetothermia_bacterium_SCGC_AH-147-K15 Bigelow Laboratory for Ocean Sciences 3300022248 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 992220 1133 1 0 1 0 0.0 single_particle_sort 3300036084 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_G15 DOE Joint Genome Institute (JGI) 3300036084 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 27775 42 1 0 0 0 SRX10046322 Unrestricted 0.0 single_particle_sort 3300033930 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.I18 DOE Joint Genome Institute (JGI) 3300033930 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 446710 506 0 0 0 0 SRX7630411 Unrestricted 0.0 single_particle_sort 3300016336 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown archaeum SCGC_AG-582-P19 DOE Joint Genome Institute (JGI) 3300016336 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 716092 811 1 0 0 0 SRX3580058 Unrestricted 0.0 single_particle_sort 3300015972 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-K05 DOE Joint Genome Institute (JGI) 3300015972 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 350927 438 0 0 0 0 SRX3563846 Unrestricted 0.0 single_particle_sort 3300071221 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_Wchmk_B10_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071221 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 523198 559 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300022079 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from unchlorinated drinking water, KWR Watercycle Research Institute, Gelderland, Netherlands - Microgenomates bacterium JGI MDM2 000217CP-H21 DOE Joint Genome Institute (JGI) 3300022079 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Drinking water Freshwater Unchlorinated freshwater 52.2278 5.919 219294 291 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300021646 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.F20 DOE Joint Genome Institute (JGI) 3300021646 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 61224 93 0 0 0 0 SRX3991272 Unrestricted 0.0 single_particle_sort 3300033359 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.H10 DOE Joint Genome Institute (JGI) 3300033359 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 206022 208 0 0 0 0 SRX7630584 Unrestricted 0.0 single_particle_sort 3300016074 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacterium bacterium SCGC_AG-582-N18 DOE Joint Genome Institute (JGI) 3300016074 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 540548 557 1 0 0 0 SRX3580027 Unrestricted 0.0 single_particle_sort 3300014452 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.B15 DOE Joint Genome Institute (JGI) 3300014452 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1265876 1401 0 0 0 0 SRX3368329 Unrestricted 0.0 single_particle_sort 3300032538 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.N13 DOE Joint Genome Institute (JGI) 3300032538 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 363455 428 0 0 0 0 SRX6429112 Unrestricted 0.0 single_particle_sort 3300033210 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.N15 DOE Joint Genome Institute (JGI) 3300033210 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 455165 523 0 0 0 0 SRX7629316 Unrestricted 0.0 single_particle_sort 3300024634 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-E06 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024634 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 59642 65 0 0 0 0 0.0 single_particle_sort 3300051002 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_C23_SVS DOE Joint Genome Institute (JGI) 3300051002 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 22239 43 0 0 0 0 Restricted 0.0 single_particle_sort 3300015813 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-J13 DOE Joint Genome Institute (JGI) 3300015813 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 266621 301 0 0 0 0 SRX3560706 Unrestricted 0.0 single_particle_sort 3300016303 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG-582-K09 DOE Joint Genome Institute (JGI) 3300016303 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 681964 755 1 0 1 0 SRX3580013 Unrestricted 0.0 single_particle_sort 3300021741 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.K17 DOE Joint Genome Institute (JGI) 3300021741 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 679390 730 0 0 1 0 SRX3898814 Unrestricted 0.0 single_particle_sort 3300034742 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.2.H22 DOE Joint Genome Institute (JGI) 3300034742 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 2546894 2663 1 0 1 0 SRX8390263 Unrestricted 0.0 single_particle_sort 3300014416 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.H20 DOE Joint Genome Institute (JGI) 3300014416 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 658031 799 1 0 0 0 SRX3367104 Unrestricted 0.0 single_particle_sort 3300021998 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - Acetothermia bacterium JGI MDM2 NGM80-1-G20 DOE Joint Genome Institute (JGI) 3300021998 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 413461 512 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300032344 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.N17 DOE Joint Genome Institute (JGI) 3300032344 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 2095463 3112 0 0 0 0 SRX6433600 Unrestricted 0.0 single_particle_sort 3300024834 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-E21 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024834 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 360212 456 0 0 0 0 0.0 single_particle_sort 3300036041 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_G22 DOE Joint Genome Institute (JGI) 3300036041 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 214628 267 3 0 1 0 SRX10077098 Unrestricted 0.0 single_particle_sort 3300035714 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_J12 DOE Joint Genome Institute (JGI) 3300035714 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 26562 34 0 0 0 0 SRX10045572 Unrestricted 0.0 single_particle_sort 3300071203 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_WGAX_E12_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071203 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 925342 897 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300035859 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.H10 DOE Joint Genome Institute (JGI) 3300035859 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 726982 822 0 0 0 0 SRX8897080 Unrestricted 0.0 single_particle_sort 3300010829 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_40_SCGC_AG-159-N18 DOE Joint Genome Institute (JGI) 3300010829 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 644583 754 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023147 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.I13 DOE Joint Genome Institute (JGI) 3300023147 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1339349 1376 3 0 2 0 SRX4510365 Unrestricted 0.0 single_particle_sort 3300018396 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_K6 DOE Joint Genome Institute (JGI) 3300018396 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 2505562 2418 1 0 1 0 SRX4649757 Unrestricted 0.0 single_particle_sort 3300041262 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.E14 DOE Joint Genome Institute (JGI) 3300041262 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 470497 503 0 0 1 0 SRX9666167 Unrestricted 0.0 single_particle_sort 3300019900 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-N20 DOE Joint Genome Institute (JGI) 3300019900 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 213414 269 1 0 1 0 SRX4663483 Unrestricted 0.0 single_particle_sort 3300023928 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.K20 DOE Joint Genome Institute (JGI) 3300023928 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 1088118 1137 1 0 1 0 SRX4501289 Unrestricted 0.0 single_particle_sort 3300041114 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.C14 DOE Joint Genome Institute (JGI) 3300041114 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 67098 75 0 0 0 0 SRX9654515 Unrestricted 0.0 single_particle_sort 3300035949 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.I16 DOE Joint Genome Institute (JGI) 3300035949 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1152239 1199 1 0 1 0 SRX8862648 Unrestricted 0.0 single_particle_sort 3300032688 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.L8 DOE Joint Genome Institute (JGI) 3300032688 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 517123 578 0 0 0 0 SRX6452331 Unrestricted 0.0 single_particle_sort 3300016157 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG-582-N10 DOE Joint Genome Institute (JGI) 3300016157 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 602217 668 0 0 1 0 SRX3580029 Unrestricted 0.0 single_particle_sort 3300071236 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_WGAX_D10_scBac_plate.C DOE Joint Genome Institute (JGI) 3300071236 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 623853 688 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300024584 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-N04 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024584 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 13117 18 0 0 0 0 0.0 single_particle_sort 3300016321 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-J17 DOE Joint Genome Institute (JGI) 3300016321 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 612115 773 0 0 0 0 SRX3540661 Unrestricted 0.0 single_particle_sort 3300050966 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_I9_SVS DOE Joint Genome Institute (JGI) 3300050966 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 41016 75 0 0 0 0 Restricted 0.0 single_particle_sort 3300024724 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-K16 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024724 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 119492 145 0 0 0 0 0.0 single_particle_sort 3300021784 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.C8 DOE Joint Genome Institute (JGI) 3300021784 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1732235 1820 1 0 1 0 SRX3990130 Unrestricted 0.0 single_particle_sort 3300016057 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-M19 DOE Joint Genome Institute (JGI) 3300016057 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 465319 540 1 0 2 0 SRX3560783 Unrestricted 0.0 single_particle_sort 3300018358 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Chlorobiales_bacterium_SCGC_AG-650-A07 DOE Joint Genome Institute (JGI) 3300018358 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1841038 1611 1 0 1 0 SRX3981312 Unrestricted 0.0 single_particle_sort 3300032381 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.M13 DOE Joint Genome Institute (JGI) 3300032381 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 651545 815 0 0 0 0 SRX6655565 Unrestricted 0.0 single_particle_sort 3300016628 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - NC10_bacterium_SCGC_AG-636-P09 DOE Joint Genome Institute (JGI) 3300016628 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 2799760 2925 1 0 1 0 SRX3784420 Unrestricted 0.0 single_particle_sort 3300034529 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P8_E5 DOE Joint Genome Institute (JGI) 3300034529 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 5340 6 0 0 0 0 SRX8136550 Unrestricted 0.0 single_particle_sort 3300018126 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - uncultured microorganism JGI MDM2 ZSSED05-1-D7 DOE Joint Genome Institute (JGI) 3300018126 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 328687 418 1 0 0 0 SRX3916440 Unrestricted 0.0 single_particle_sort 3300038004 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.N4 DOE Joint Genome Institute (JGI) 3300038004 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 25819 31 0 0 0 0 SRX9409549 Unrestricted 0.0 single_particle_sort 3300023604 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.K11 DOE Joint Genome Institute (JGI) 3300023604 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 621759 746 1 0 1 0 SRX4548016 Unrestricted 0.0 single_particle_sort 3300041629 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.K20 DOE Joint Genome Institute (JGI) 3300041629 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2475083 2688 0 0 0 0 SRX14835647 Unrestricted 0.0 single_particle_sort 3300021769 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.D6 DOE Joint Genome Institute (JGI) 3300021769 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 2495666 2643 1 0 1 0 SRX3990029 Unrestricted 0.0 single_particle_sort 3300015585 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown archaeum SCGC_AG-122-F10 DOE Joint Genome Institute (JGI) 3300015585 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 744971 975 0 0 0 0 SRX3573064 Unrestricted 0.0 single_particle_sort 3300038104 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .E8 DOE Joint Genome Institute (JGI) 3300038104 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 452673 679 0 0 0 0 SRX9411629 Unrestricted 0.0 single_particle_sort 3300015725 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-3-D12 DOE Joint Genome Institute (JGI) 3300015725 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 137586 179 0 0 1 0 SRX3551360 Unrestricted 0.0 single_particle_sort 3300023804 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.I5 DOE Joint Genome Institute (JGI) 3300023804 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 412169 462 0 0 0 0 SRX4550066 Unrestricted 0.0 single_particle_sort 3300019529 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Leptolyngbya sp. HL7711_P1F1 JGI 000148CP-H11 DOE Joint Genome Institute (JGI) 3300019529 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 3380901 3407 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300022118 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.C13 DOE Joint Genome Institute (JGI) 3300022118 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 2443872 2175 0 0 0 0 SRX3998340 Unrestricted 0.0 single_particle_sort 3300015002 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-2.J18 DOE Joint Genome Institute (JGI) 3300015002 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 230776 305 0 0 0 0 Restricted 0.0 single_particle_sort 3300018458 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-P15 DOE Joint Genome Institute (JGI) 3300018458 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1260274 1179 0 0 0 0 SRX3981320 Unrestricted 0.0 single_particle_sort 3300015730 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-D19 DOE Joint Genome Institute (JGI) 3300015730 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 139426 186 1 0 1 0 SRX3560640 Unrestricted 0.0 single_particle_sort 3300033201 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.K15 DOE Joint Genome Institute (JGI) 3300033201 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 1331334 1506 1 0 1 0 SRX7629299 Unrestricted 0.0 single_particle_sort 3300033772 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_G10 DOE Joint Genome Institute (JGI) 3300033772 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 6613 8 0 0 0 0 SRX7525361 Unrestricted 0.0 single_particle_sort 3300016091 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown bacterium SCGC_AG-657-A07 DOE Joint Genome Institute (JGI) 3300016091 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 532237 570 1 0 1 0 SRX3593699 Unrestricted 0.0 single_particle_sort 3300015999 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-578-B17 DOE Joint Genome Institute (JGI) 3300015999 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 388350 468 0 0 1 0 SRX3579174 Unrestricted 0.0 single_particle_sort 3300016421 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-M12 DOE Joint Genome Institute (JGI) 3300016421 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 1047183 1115 0 0 1 0 SRX3540863 Unrestricted 0.0 single_particle_sort 3300023571 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.H5 DOE Joint Genome Institute (JGI) 3300023571 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 57182 76 0 0 0 0 SRX4547914 Unrestricted 0.0 single_particle_sort 3300022018 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - Candidate_division_AC1_(TA06)_bacterium_AG-188-E19 DOE Joint Genome Institute (JGI) 3300022018 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater, Deep subsurface Drilled well/Borehole groundwater -28.317 27.772 764299 711 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300022092 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.D14 DOE Joint Genome Institute (JGI) 3300022092 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1059031 1228 0 0 1 0 SRX3998405 Unrestricted 0.0 single_particle_sort 3300016191 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Microgenomates bacterium SCGC_AG-278-B21 DOE Joint Genome Institute (JGI) 3300016191 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 113834 137 0 0 0 0 SRX3578357 Unrestricted 0.0 single_particle_sort 3300018383 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_L10 DOE Joint Genome Institute (JGI) 3300018383 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 1749360 1875 1 0 1 0 SRX4647813 Unrestricted 0.0 single_particle_sort 3300041345 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.L14 DOE Joint Genome Institute (JGI) 3300041345 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1907818 1932 0 0 0 0 SRX9646938 Unrestricted 0.0 single_particle_sort 3300033968 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.M16 DOE Joint Genome Institute (JGI) 3300033968 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 251945 295 0 0 0 0 SRX7630400 Unrestricted 0.0 single_particle_sort 3300015102 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - unknown bacterium SCGC_AG-290-M10 DOE Joint Genome Institute (JGI) 3300015102 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 269905 354 0 0 0 0 SRX3578754 Unrestricted 0.0 single_particle_sort 3300048747 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_H11_SVS DOE Joint Genome Institute (JGI) 3300048747 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 69024 109 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300016587 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, USA - Aminicenantes_bacterium_SCGC_AG-640-K05 DOE Joint Genome Institute (JGI) 3300016587 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Acidic Artesian spring Sediment Hot spring sediment 34.9956 -98.6889 7.5 2110614 1917 1 0 1 0 SRX3784241 Unrestricted 0.0 single_particle_sort 3300041281 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.L16 DOE Joint Genome Institute (JGI) 3300041281 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1628267 1535 1 0 1 0 SRX9653883 Unrestricted 0.0 single_particle_sort 3300035478 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_H16 DOE Joint Genome Institute (JGI) 3300035478 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 52108 73 0 0 0 0 SRX9540265 Unrestricted 0.0 single_particle_sort 3300023164 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.F6 DOE Joint Genome Institute (JGI) 3300023164 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 3323775 2960 0 0 0 0 SRX4507647 Unrestricted 0.0 single_particle_sort 3300016246 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Peregrinibacteria bacterium SCGC_AG-574-N04 DOE Joint Genome Institute (JGI) 3300016246 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 523732 583 0 0 0 0 SRX3579050 Unrestricted 0.0 single_particle_sort 3300022631 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Acidobacteriales bacterium JGI PCGPRD042217_7 DOE Joint Genome Institute (JGI) 3300022631 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 1625489 1746 2 0 2 0 SRX4414687 Unrestricted 0.0 single_particle_sort 3300016549 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-F15 DOE Joint Genome Institute (JGI) 3300016549 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 1140200 1089 0 0 0 0 SRX3784749 Unrestricted 0.0 single_particle_sort 3300022703 *Microbiome Permanent Draft Subsurface sediment and ocean crust microbial communities from Atlantis Massif Sorted cell/s from oceanic crust serpentine and harzburgite in Atlantis Massif, mid-Atlantic ridge, Atlantic Ocean - 68B1R1_BONCAT_sort Marine Biological Laboratory 3300022703 Metagenome - Single Particle Sort SPAdes v. 3.9.0 released by JGI data releasing policy No Yes jackiegoordial@gmail.com Jackie Goordial No Environmental Aquatic Deep subsurface Marine Rock Oceanic Crust 30.12983 -42.122 1.44 3273279 4259 0 1 0 2 0.0 single_particle_sort 3300024740 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-K06 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024740 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 115914 158 0 0 0 0 0.0 single_particle_sort 3300018400 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_H11 DOE Joint Genome Institute (JGI) 3300018400 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 2419220 2263 1 0 1 0 SRX4649176 Unrestricted 0.0 single_particle_sort 3300015488 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-E06 DOE Joint Genome Institute (JGI) 3300015488 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 200193 286 0 0 0 0 SRX3549924 Unrestricted 0.0 single_particle_sort 3300015793 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-I04 DOE Joint Genome Institute (JGI) 3300015793 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 194797 248 0 0 0 0 SRX3551339 Unrestricted 0.0 single_particle_sort 3300016632 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, USA - Aminicenantes_bacterium_SCGC_AG-640-C19 DOE Joint Genome Institute (JGI) 3300016632 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Acidic Artesian spring Sediment Hot spring sediment 34.9956 -98.6889 7.5 3604114 3311 1 0 1 0 SRX3784238 Unrestricted 0.0 single_particle_sort 3300016273 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-574-O14 DOE Joint Genome Institute (JGI) 3300016273 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 574031 679 1 0 1 0 SRX3579054 Unrestricted 0.0 single_particle_sort 3300019441 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent microbial mat, Guaymas Basin, Mexico - 4C_dil_4869_18_11 DOE Joint Genome Institute (JGI) 3300019441 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.001 -110.5998 9329115 7383 1 0 1 0 SRX3973874 Unrestricted 0.0 single_particle_sort 3300019983 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-E17 DOE Joint Genome Institute (JGI) 3300019983 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 611832 725 0 0 0 0 SRX4654315 Unrestricted 0.0 single_particle_sort 3300015862 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-F19 DOE Joint Genome Institute (JGI) 3300015862 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 178388 216 0 0 0 0 SRX3546988 Unrestricted 0.0 single_particle_sort 3300024072 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.J9 DOE Joint Genome Institute (JGI) 3300024072 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 505180 509 0 0 0 0 SRX4501132 Unrestricted 0.0 single_particle_sort 3300015662 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - DC4.4.2015 0309 DC4 P4 16S.L9.double-peak DOE Joint Genome Institute (JGI) 3300015662 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 867692 1099 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300037939 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.D5 DOE Joint Genome Institute (JGI) 3300037939 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 59386 64 0 0 0 0 SRX9410604 Unrestricted 0.0 single_particle_sort 3300071280 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_edMDA_G04_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071280 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 421004 516 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023932 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.F18 DOE Joint Genome Institute (JGI) 3300023932 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 989726 1157 2 0 1 0 SRX4519541 Unrestricted 0.0 single_particle_sort 3300034441 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.L7 DOE Joint Genome Institute (JGI) 3300034441 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 782861 863 1 0 2 0 SRX8389174 Unrestricted 0.0 single_particle_sort 3300015881 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-A05 DOE Joint Genome Institute (JGI) 3300015881 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 234001 279 0 0 1 0 SRX3580158 Unrestricted 0.0 single_particle_sort 3300015388 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - unknown archaeum SCGC_AG-128-K20 DOE Joint Genome Institute (JGI) 3300015388 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 530796 648 0 0 1 0 SRX3577031 Unrestricted 0.0 single_particle_sort 3300013033 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - DC4.3.2014 1216 MDM DC4 p3 16S.B9.double-seq DOE Joint Genome Institute (JGI) 3300013033 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 229655 319 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300018300 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Lentisphaerae_bacterium_SCGC_AG-650-F20 DOE Joint Genome Institute (JGI) 3300018300 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1152956 1151 1 0 1 0 SRX3981510 Unrestricted 0.0 single_particle_sort 3300051107 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_J10_SVS DOE Joint Genome Institute (JGI) 3300051107 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 199645 231 0 0 0 0 Restricted 0.0 single_particle_sort 3300038221 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.H7 DOE Joint Genome Institute (JGI) 3300038221 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 535182 608 1 0 1 0 SRX9411052 Unrestricted 0.0 single_particle_sort 3300034747 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.2.H21 DOE Joint Genome Institute (JGI) 3300034747 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 2647371 2677 1 0 1 0 SRX8390282 Unrestricted 0.0 single_particle_sort 3300051007 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_C11_SVS DOE Joint Genome Institute (JGI) 3300051007 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 13953 15 0 0 0 0 Restricted 0.0 single_particle_sort 3300035871 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.G9 DOE Joint Genome Institute (JGI) 3300035871 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 907340 1008 0 0 1 0 SRX8857247 Unrestricted 0.0 single_particle_sort 3300050794 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_H9_SVS DOE Joint Genome Institute (JGI) 3300050794 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 36374 43 0 0 0 0 Restricted 0.0 single_particle_sort 3300015453 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-F10 DOE Joint Genome Institute (JGI) 3300015453 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 121931 163 1 0 0 0 SRX3549448 Unrestricted 0.0 single_particle_sort 3300041334 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.N13 DOE Joint Genome Institute (JGI) 3300041334 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2300623 2308 0 0 1 0 SRX9646881 Unrestricted 0.0 single_particle_sort 3300036599 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.E5 DOE Joint Genome Institute (JGI) 3300036599 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 759725 852 1 0 1 0 SRX8901746 Unrestricted 0.0 single_particle_sort 3300015526 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-L10 DOE Joint Genome Institute (JGI) 3300015526 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 370517 460 0 0 0 0 SRX3549990 Unrestricted 0.0 single_particle_sort 3300049941 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_F18_SVS DOE Joint Genome Institute (JGI) 3300049941 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 46204 74 0 0 0 0 Restricted 0.0 single_particle_sort 3300035776 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.F21 DOE Joint Genome Institute (JGI) 3300035776 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 937197 1006 1 0 0 0 SRX8858105 Unrestricted 0.0 single_particle_sort 3300019648 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-L13 DOE Joint Genome Institute (JGI) 3300019648 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 114879 154 0 0 0 0 SRX3563020 Unrestricted 0.0 single_particle_sort 3300018185 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_D18 DOE Joint Genome Institute (JGI) 3300018185 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 352462 349 0 0 1 0 SRX4652766 Unrestricted 0.0 single_particle_sort 3300035987 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.F13 DOE Joint Genome Institute (JGI) 3300035987 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 835859 878 0 0 0 0 SRX8855392 Unrestricted 0.0 single_particle_sort 3300041143 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.H5 DOE Joint Genome Institute (JGI) 3300041143 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1208125 1272 0 0 0 0 SRX9653937 Unrestricted 0.0 single_particle_sort 3300019958 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-G5 DOE Joint Genome Institute (JGI) 3300019958 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 342538 334 0 0 0 0 SRX4655801 Unrestricted 0.0 single_particle_sort 3300015229 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - Microgenometes bacterium SCGC_AG-290-F14 DOE Joint Genome Institute (JGI) 3300015229 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 632657 713 1 0 0 0 SRX3578558 Unrestricted 0.0 single_particle_sort 3300038075 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.H8 DOE Joint Genome Institute (JGI) 3300038075 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 24473 40 0 0 0 0 SRX9411491 Unrestricted 0.0 single_particle_sort 3300023875 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.N5 DOE Joint Genome Institute (JGI) 3300023875 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 761961 761 1 0 1 0 SRX4549813 Unrestricted 0.0 single_particle_sort 3300014391 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.J06 DOE Joint Genome Institute (JGI) 3300014391 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 308359 407 0 0 0 0 SRX3367203 Unrestricted 0.0 single_particle_sort 3300014457 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.N17 DOE Joint Genome Institute (JGI) 3300014457 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1201950 1464 1 0 1 0 SRX3368216 Unrestricted 0.0 single_particle_sort 3300015786 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-3-F13 DOE Joint Genome Institute (JGI) 3300015786 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 190054 244 0 0 0 0 SRX3551377 Unrestricted 0.0 single_particle_sort 3300041176 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.K21 DOE Joint Genome Institute (JGI) 3300041176 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 35745 51 0 0 0 0 SRX9661020 Unrestricted 0.0 single_particle_sort 3300035743 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.J16 DOE Joint Genome Institute (JGI) 3300035743 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1254322 1341 1 0 1 0 SRX8857523 Unrestricted 0.0 single_particle_sort 3300015977 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-578-A23 DOE Joint Genome Institute (JGI) 3300015977 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 372873 444 1 0 0 0 SRX3579175 Unrestricted 0.0 single_particle_sort 3300018133 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-J06 DOE Joint Genome Institute (JGI) 3300018133 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 366783 437 0 0 0 0 SRX3974846 Unrestricted 0.0 single_particle_sort 3300032507 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.D6 DOE Joint Genome Institute (JGI) 3300032507 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 296528 335 0 0 0 0 SRX6430390 Unrestricted 0.0 single_particle_sort 3300033221 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.H14 DOE Joint Genome Institute (JGI) 3300033221 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 375306 469 0 0 0 0 SRX7629286 Unrestricted 0.0 single_particle_sort 3300018344 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_B9 DOE Joint Genome Institute (JGI) 3300018344 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1632415 1490 1 0 1 0 SRX4650355 Unrestricted 0.0 single_particle_sort 3300048719 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_H7_SVS DOE Joint Genome Institute (JGI) 3300048719 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 105733 147 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015022 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.M18 DOE Joint Genome Institute (JGI) 3300015022 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 376215 430 1 0 1 0 Restricted 0.0 single_particle_sort 3300015492 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-E13 DOE Joint Genome Institute (JGI) 3300015492 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 241380 303 0 0 0 0 SRX3549923 Unrestricted 0.0 single_particle_sort 3300019672 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown archaeum SCGC_AG-122-N03 DOE Joint Genome Institute (JGI) 3300019672 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 231917 319 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035963 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.H14 DOE Joint Genome Institute (JGI) 3300035963 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1954351 2037 1 0 1 0 SRX8862696 Unrestricted 0.0 single_particle_sort 3300015418 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Omnitrophica bacterium SCGC_AG-128-A01 DOE Joint Genome Institute (JGI) 3300015418 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 1274355 1236 1 0 1 0 SRX3574192 Unrestricted 0.0 single_particle_sort 3300041370 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.I7 DOE Joint Genome Institute (JGI) 3300041370 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 432134 484 0 0 2 0 SRX9648550 Unrestricted 0.0 single_particle_sort 3300016401 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-3-0L6 DOE Joint Genome Institute (JGI) 3300016401 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 826046 1012 0 0 1 0 SRX3554306 Unrestricted 0.0 single_particle_sort 3300013300 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - OP2 bacterium JGI GBS_9_E15 DOE Joint Genome Institute (JGI) 3300013300 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Near-boiling (>90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 780741 869 1 0 0 0 SRX4808254 Unrestricted 0.0 single_particle_sort 3300015122 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-E15 DOE Joint Genome Institute (JGI) 3300015122 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 426886 507 1 0 1 0 SRX3578318 Unrestricted 0.0 single_particle_sort 3300022277 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - unknown_bacterium_SCGC_AH-147-O20 Bigelow Laboratory for Ocean Sciences 3300022277 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 529679 581 0 0 0 0 0.0 single_particle_sort 3300019913 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-M20 DOE Joint Genome Institute (JGI) 3300019913 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 515341 556 0 0 0 0 SRX4663366 Unrestricted 0.0 single_particle_sort 3300018106 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-L14 DOE Joint Genome Institute (JGI) 3300018106 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 208133 215 0 0 0 0 SRX3974845 Unrestricted 0.0 single_particle_sort 3300038024 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.I11 DOE Joint Genome Institute (JGI) 3300038024 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 444035 554 0 0 1 0 SRX9411123 Unrestricted 0.0 single_particle_sort 3300013085 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.H07 DOE Joint Genome Institute (JGI) 3300013085 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1087984 1307 1 0 1 0 SRX3366945 Unrestricted 0.0 single_particle_sort 3300023624 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.I7 DOE Joint Genome Institute (JGI) 3300023624 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 1341339 1463 0 0 0 0 SRX4548008 Unrestricted 0.0 single_particle_sort 3300041609 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.2.E15 DOE Joint Genome Institute (JGI) 3300041609 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1976193 2168 0 0 0 0 SRX14832163 Unrestricted 0.0 single_particle_sort 3300015705 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-I12 DOE Joint Genome Institute (JGI) 3300015705 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 101744 148 1 0 0 0 SRX3560804 Unrestricted 0.0 single_particle_sort 3300038124 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.N10 DOE Joint Genome Institute (JGI) 3300038124 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 1764315 1767 1 0 1 0 SRX9411754 Unrestricted 0.0 single_particle_sort 3300050979 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_N9_SVS DOE Joint Genome Institute (JGI) 3300050979 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 46942 73 0 0 0 0 Restricted 0.0 single_particle_sort 3300019509 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Chloroflexi bacterium HL7711_P2H4 JGI 000151CP-J13 DOE Joint Genome Institute (JGI) 3300019509 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 875263 944 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300071210 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_E04_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071210 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 2962789 2950 1 0 2 0 Unrestricted 0.0 single_particle_sort 3300023824 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.M14 DOE Joint Genome Institute (JGI) 3300023824 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 443207 546 0 0 0 0 SRX4501573 Unrestricted 0.0 single_particle_sort 3300033689 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P1_P16 DOE Joint Genome Institute (JGI) 3300033689 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 8829 14 0 0 0 0 SRX7530074 Unrestricted 0.0 single_particle_sort 3300021743 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.J21 DOE Joint Genome Institute (JGI) 3300021743 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 554606 622 0 0 0 0 SRX4009724 Unrestricted 0.0 single_particle_sort 3300014468 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.E12 DOE Joint Genome Institute (JGI) 3300014468 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1661399 1588 1 0 0 0 SRX3366847 Unrestricted 0.0 single_particle_sort 3300033664 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P2_I17 DOE Joint Genome Institute (JGI) 3300033664 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 11596 13 0 0 0 0 SRX7530071 Unrestricted 0.0 single_particle_sort 3300035265 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_N7 DOE Joint Genome Institute (JGI) 3300035265 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 54734 75 0 0 0 0 SRX9537909 Unrestricted 0.0 single_particle_sort 3300016301 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG_AG-578-K05 DOE Joint Genome Institute (JGI) 3300016301 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 579351 754 1 0 0 0 SRX3579264 Unrestricted 0.0 single_particle_sort 3300015811 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-L15 DOE Joint Genome Institute (JGI) 3300015811 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 254956 293 0 0 1 0 SRX3561077 Unrestricted 0.0 single_particle_sort 3300015392 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - unknown archaeum SCGC_AG-128-C21 DOE Joint Genome Institute (JGI) 3300015392 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 547802 715 1 0 1 0 SRX3574243 Unrestricted 0.0 single_particle_sort 3300021987 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - Acetothermia bacterium JGI MDM2 NGM80-1-C21 DOE Joint Genome Institute (JGI) 3300021987 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 245951 293 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300021776 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.C14 DOE Joint Genome Institute (JGI) 3300021776 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 961580 1053 0 0 0 0 SRX4009959 Unrestricted 0.0 single_particle_sort 3300018444 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_E9 DOE Joint Genome Institute (JGI) 3300018444 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 594870 663 0 0 0 0 SRX4650614 Unrestricted 0.0 single_particle_sort 3300033864 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.C8 DOE Joint Genome Institute (JGI) 3300033864 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 305570 344 0 0 1 0 SRX7626221 Unrestricted 0.0 single_particle_sort 3300024704 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-E02 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024704 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 98517 130 0 0 0 0 0.0 single_particle_sort 3300019967 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-C11 DOE Joint Genome Institute (JGI) 3300019967 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 438111 476 1 0 1 0 SRX4653690 Unrestricted 0.0 single_particle_sort 3300015590 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-I16 DOE Joint Genome Institute (JGI) 3300015590 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 1091951 1152 0 0 0 0 SRX3549981 Unrestricted 0.0 single_particle_sort 3300015752 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-L16 DOE Joint Genome Institute (JGI) 3300015752 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 168193 194 0 0 0 0 SRX3561049 Unrestricted 0.0 single_particle_sort 3300016608 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - NC10_bacterium_SCGC_AG-636-K08 DOE Joint Genome Institute (JGI) 3300016608 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 2211922 2341 0 0 0 0 SRX3784411 Unrestricted 0.0 single_particle_sort 3300018115 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_N8 DOE Joint Genome Institute (JGI) 3300018115 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 258768 274 0 0 0 0 SRX4647594 Unrestricted 0.0 single_particle_sort 3300071223 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_Wchmk_G10_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071223 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 774955 911 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035917 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_K11 DOE Joint Genome Institute (JGI) 3300035917 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 114766 144 0 0 0 0 SRX10045553 Unrestricted 0.0 single_particle_sort 3300010809 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_22_SCGC_AG-159-G21 DOE Joint Genome Institute (JGI) 3300010809 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 531001 508 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300021671 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.N8 DOE Joint Genome Institute (JGI) 3300021671 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 201488 233 0 0 0 0 SRX4009602 Unrestricted 0.0 single_particle_sort 3300019920 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-M11 DOE Joint Genome Institute (JGI) 3300019920 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 769081 885 1 0 1 0 SRX4663354 Unrestricted 0.0 single_particle_sort 3300023908 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.K17 DOE Joint Genome Institute (JGI) 3300023908 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 963050 993 0 0 0 0 SRX4549796 Unrestricted 0.0 single_particle_sort 3300015716 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-J14 DOE Joint Genome Institute (JGI) 3300015716 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 123334 168 1 0 0 0 SRX3560807 Unrestricted 0.0 single_particle_sort 3300018367 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_C13 DOE Joint Genome Institute (JGI) 3300018367 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 1782939 1720 0 0 0 0 SRX4647860 Unrestricted 0.0 single_particle_sort 3300038040 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.05.I14 DOE Joint Genome Institute (JGI) 3300038040 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 163674 214 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015506 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-K19 DOE Joint Genome Institute (JGI) 3300015506 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 289689 358 0 0 0 0 SRX3549817 Unrestricted 0.0 single_particle_sort 3300023339 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.N17 DOE Joint Genome Institute (JGI) 3300023339 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 922511 938 1 0 1 0 SRX4548822 Unrestricted 0.0 single_particle_sort 3300016068 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-G16 DOE Joint Genome Institute (JGI) 3300016068 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 499857 549 0 0 0 0 SRX3563252 Unrestricted 0.0 single_particle_sort 3300016563 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Aminicenantes_bacterium_SCGC_AG-636-D09 DOE Joint Genome Institute (JGI) 3300016563 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Sediment Freshwater Unclassified Freshwater sediment 53.7598 107.9791 7.32 1596367 1594 0 0 0 0 SRX3784475 Unrestricted 0.0 single_particle_sort 3300035784 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.H8 DOE Joint Genome Institute (JGI) 3300035784 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 2069881 2103 0 0 0 0 SRX8858267 Unrestricted 0.0 single_particle_sort 3300023950 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.E20 DOE Joint Genome Institute (JGI) 3300023950 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 1319148 1299 1 0 1 0 SRX4523611 Unrestricted 0.0 single_particle_sort 3300023640 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.D18 DOE Joint Genome Institute (JGI) 3300023640 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 108088 145 0 0 0 0 SRX4415713 Unrestricted 0.0 single_particle_sort 3300018335 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-E09 DOE Joint Genome Institute (JGI) 3300018335 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1492117 1375 0 0 1 0 SRX3974491 Unrestricted 0.0 single_particle_sort 3300016168 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Thaumarchaeota archaeum SCGC_AG-657-C16 DOE Joint Genome Institute (JGI) 3300016168 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 517287 684 1 0 1 0 SRX3594357 Unrestricted 0.0 single_particle_sort 3300022299 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Acetothermia_bacterium_SCGC_AH-151-P11 Bigelow Laboratory for Ocean Sciences 3300022299 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 1389299 1497 1 0 0 0 0.0 single_particle_sort 3300038140 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.K11 DOE Joint Genome Institute (JGI) 3300038140 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 845244 886 0 0 0 0 SRX9411759 Unrestricted 0.0 single_particle_sort 3300015774 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-N05 DOE Joint Genome Institute (JGI) 3300015774 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 184467 227 0 0 0 0 SRX3564454 Unrestricted 0.0 single_particle_sort 3300041184 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.M19 DOE Joint Genome Institute (JGI) 3300041184 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 413833 440 1 0 1 0 SRX9664445 Unrestricted 0.0 single_particle_sort 3300023840 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.K14 DOE Joint Genome Institute (JGI) 3300023840 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 530232 629 0 0 0 0 SRX4520679 Unrestricted 0.0 single_particle_sort 3300034719 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.3.D16 DOE Joint Genome Institute (JGI) 3300034719 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 2054424 2191 1 0 1 0 SRX8390537 Unrestricted 0.0 single_particle_sort 3300032618 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.L12 DOE Joint Genome Institute (JGI) 3300032618 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 532087 584 0 0 1 0 SRX6428726 Unrestricted 0.0 single_particle_sort 3300033346 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.F11 DOE Joint Genome Institute (JGI) 3300033346 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 379069 459 1 0 1 0 SRX7630583 Unrestricted 0.0 single_particle_sort 3300015038 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.I18 DOE Joint Genome Institute (JGI) 3300015038 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 440806 527 0 0 0 0 Restricted 0.0 single_particle_sort 3300015533 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-H10 DOE Joint Genome Institute (JGI) 3300015533 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 465197 493 0 0 0 0 SRX3549746 Unrestricted 0.0 single_particle_sort 3300032692 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.K20 DOE Joint Genome Institute (JGI) 3300032692 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 563607 589 0 0 0 0 SRX6426502 Unrestricted 0.0 single_particle_sort 3300021659 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.L11 DOE Joint Genome Institute (JGI) 3300021659 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 121216 174 0 0 0 0 SRX4009956 Unrestricted 0.0 single_particle_sort 3300018320 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-I04 DOE Joint Genome Institute (JGI) 3300018320 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1301069 1338 0 0 1 0 SRX4815137 Unrestricted 0.0 single_particle_sort 3300051127 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_P10_SVS DOE Joint Genome Institute (JGI) 3300051127 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 189740 229 0 0 0 0 Restricted 0.0 single_particle_sort 3300033373 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.D4 DOE Joint Genome Institute (JGI) 3300033373 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 156940 216 0 0 0 0 SRX7626825 Unrestricted 0.0 single_particle_sort 3300051791 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_B13_SVS DOE Joint Genome Institute (JGI) 3300051791 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 10991 16 0 0 0 0 Restricted 0.0 single_particle_sort 3300021714 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.F18 DOE Joint Genome Institute (JGI) 3300021714 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 544537 527 0 0 0 0 SRX3990028 Unrestricted 0.0 single_particle_sort 3300015138 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown archaeum SCGC_AG-274-P17 DOE Joint Genome Institute (JGI) 3300015138 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 466341 635 0 0 0 0 SRX3578342 Unrestricted 0.0 single_particle_sort 3300038201 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.G8 DOE Joint Genome Institute (JGI) 3300038201 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 636346 902 0 0 0 0 SRX9411823 Unrestricted 0.0 single_particle_sort 3300050997 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 173_M14_SVS DOE Joint Genome Institute (JGI) 3300050997 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 59886 90 0 0 0 0 Restricted 0.0 single_particle_sort 3300033957 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.H14 DOE Joint Genome Institute (JGI) 3300033957 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 564417 650 0 0 0 0 SRX7630386 Unrestricted 0.0 single_particle_sort 3300015515 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-G19 DOE Joint Genome Institute (JGI) 3300015515 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 324782 407 0 0 0 0 SRX3549931 Unrestricted 0.0 single_particle_sort 3300033647 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_O13 DOE Joint Genome Institute (JGI) 3300033647 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 8948 10 0 0 0 0 SRX7528833 Unrestricted 0.0 single_particle_sort 3300018435 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_E15 DOE Joint Genome Institute (JGI) 3300018435 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 334900 378 0 0 0 0 SRX4652229 Unrestricted 0.0 single_particle_sort 3300019944 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-D10 DOE Joint Genome Institute (JGI) 3300019944 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 52446 65 0 0 0 0 SRX4653732 Unrestricted 0.0 single_particle_sort 3300050773 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_P20_SVS DOE Joint Genome Institute (JGI) 3300050773 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 83270 113 0 0 0 0 Restricted 0.0 single_particle_sort 3300036739 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.D12.redo DOE Joint Genome Institute (JGI) 3300036739 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 741954 797 0 0 0 0 SRX8908919 Unrestricted 0.0 single_particle_sort 3300019654 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown archaeum SCGC_AG-657-N11 DOE Joint Genome Institute (JGI) 3300019654 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 137620 186 1 0 2 0 Unrestricted 0.0 single_particle_sort 3300014994 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-2.I15 DOE Joint Genome Institute (JGI) 3300014994 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 175956 253 1 0 1 0 Restricted 0.0 single_particle_sort 3300033847 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.F5 DOE Joint Genome Institute (JGI) 3300033847 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 379219 464 1 0 3 0 SRX7626145 Unrestricted 0.0 single_particle_sort 3300041169 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.C13 DOE Joint Genome Institute (JGI) 3300041169 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 930148 992 0 0 0 0 SRX9722254 Unrestricted 0.0 single_particle_sort 3300050951 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-956-L17 DOE Joint Genome Institute (JGI) 3300050951 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1197303 -42.124435 1291810 1427 1 0 1 0 Restricted 0.0 single_particle_sort 3300035769 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.E14 DOE Joint Genome Institute (JGI) 3300035769 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 1265822 1345 1 0 1 0 SRX8858020 Unrestricted 0.0 single_particle_sort 3300022088 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.H10 DOE Joint Genome Institute (JGI) 3300022088 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1030152 994 0 0 0 0 SRX3998128 Unrestricted 0.0 single_particle_sort 3300050841 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_I15_SVS DOE Joint Genome Institute (JGI) 3300050841 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 78431 90 0 0 0 0 Restricted 0.0 single_particle_sort 3300018313 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-J14 DOE Joint Genome Institute (JGI) 3300018313 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1277469 1276 0 0 0 0 SRX3981035 Unrestricted 0.0 single_particle_sort 3300032717 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.G21 DOE Joint Genome Institute (JGI) 3300032717 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 196351 244 0 0 0 0 SRX6431831 Unrestricted 0.0 single_particle_sort 3300041211 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.2.G7 DOE Joint Genome Institute (JGI) 3300041211 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1098847 937 1 0 1 0 SRX9725213 Unrestricted 0.0 single_particle_sort 3300016517 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Microgenometes_bacterium_SCGC_AG-650-A16 DOE Joint Genome Institute (JGI) 3300016517 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 442078 495 1 0 0 0 SRX3784748 Unrestricted 0.0 single_particle_sort 3300024775 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-E04 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024775 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 157606 204 0 0 0 0 0.0 single_particle_sort 3300018190 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_I14 DOE Joint Genome Institute (JGI) 3300018190 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 360655 422 0 0 0 0 SRX4651075 Unrestricted 0.0 single_particle_sort 3300032679 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.K8 DOE Joint Genome Institute (JGI) 3300032679 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 364109 399 0 0 0 0 SRX6452454 Unrestricted 0.0 single_particle_sort 3300016125 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-C15 DOE Joint Genome Institute (JGI) 3300016125 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 486338 625 0 0 0 0 SRX3563202 Unrestricted 0.0 single_particle_sort 3300036629 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.G17 DOE Joint Genome Institute (JGI) 3300036629 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 1100171 1167 1 0 1 0 SRX8902913 Unrestricted 0.0 single_particle_sort 3300015696 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-3-E14 DOE Joint Genome Institute (JGI) 3300015696 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 84210 113 0 0 0 0 SRX3551367 Unrestricted 0.0 single_particle_sort 3300024870 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.F21 DOE Joint Genome Institute (JGI) 3300024870 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 20933 28 0 0 0 0 SRX4390943 Unrestricted 0.0 single_particle_sort 3300016495 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Sorted cell/s from deep shales in West Virginia, USA - MahaSR_06_J11 DOE Joint Genome Institute (JGI) 3300016495 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back deep subsurface 39.6017 -79.9761 151313 201 0 0 0 0 SRX3577106 Unrestricted 0.0 single_particle_sort 3300016025 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Woesearchaeota archaeum SCGC_AG-274-O17 DOE Joint Genome Institute (JGI) 3300016025 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 414111 500 1 0 1 0 SRX3578304 Unrestricted 0.0 single_particle_sort 3300022606 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States - WD bacterium JGI AMGPRD042217_5 DOE Joint Genome Institute (JGI) 3300022606 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 206208 221 2 0 1 0 SRX4410952 Unrestricted 0.0 single_particle_sort 3300019981 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-C5 DOE Joint Genome Institute (JGI) 3300019981 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 674370 771 0 0 0 0 SRX4653729 Unrestricted 0.0 single_particle_sort 3300024670 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-J10 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024670 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 69350 102 0 0 0 0 0.0 single_particle_sort 3300015896 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG-582-M05 DOE Joint Genome Institute (JGI) 3300015896 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 285826 330 0 0 1 0 SRX3580239 Unrestricted 0.0 single_particle_sort 3300019443 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent microbial mat, Guaymas Basin, Mexico - 6AK_4869_21_06 DOE Joint Genome Institute (JGI) 3300019443 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.001 -110.5998 6579562 7892 3 0 3 0 SRX3974423 Unrestricted 0.0 single_particle_sort 3300023287 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Deep Lake surface water, Antarctica - Uncultured microbe JGI DeepLkS.SYBR.02.G13 DOE Joint Genome Institute (JGI) 3300023287 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5558 78.1913 67346 90 0 0 0 0 SRX4547899 Unrestricted 0.0 single_particle_sort 3300033974 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.I17 DOE Joint Genome Institute (JGI) 3300033974 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 842916 926 1 0 0 0 SRX7630398 Unrestricted 0.0 single_particle_sort 3300014386 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.J14 DOE Joint Genome Institute (JGI) 3300014386 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 211644 285 0 0 1 0 SRX3368436 Unrestricted 0.0 single_particle_sort 3300015027 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.F13 DOE Joint Genome Institute (JGI) 3300015027 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 345746 447 0 0 0 0 Restricted 0.0 single_particle_sort 3300015948 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-F14 DOE Joint Genome Institute (JGI) 3300015948 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 329052 413 0 0 0 0 SRX3560950 Unrestricted 0.0 single_particle_sort 3300015791 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-E06 DOE Joint Genome Institute (JGI) 3300015791 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 186700 247 0 0 0 0 SRX3551010 Unrestricted 0.0 single_particle_sort 3300016030 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-F18 DOE Joint Genome Institute (JGI) 3300016030 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 413745 507 0 0 0 0 SRX3563248 Unrestricted 0.0 single_particle_sort 3300015658 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Gongxiaoshe hot spring sediment, Tengchong, China - GXS.2.2014 1201 MDM2 GXS p2 16S.E6.double-peak DOE Joint Genome Institute (JGI) 3300015658 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 25.4401 98.4408 839236 910 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300016271 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-D13 DOE Joint Genome Institute (JGI) 3300016271 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 571402 673 0 0 0 0 SRX3562819 Unrestricted 0.0 single_particle_sort 3300051138 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_A17_SVS DOE Joint Genome Institute (JGI) 3300051138 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 94011 150 0 0 0 0 Restricted 0.0 single_particle_sort 3300015127 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-P19 DOE Joint Genome Institute (JGI) 3300015127 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 497780 549 1 0 1 0 SRX3578344 Unrestricted 0.0 single_particle_sort 3300022633 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States - Rhizobiales bacterium JGI AMGPRD042217_10 DOE Joint Genome Institute (JGI) 3300022633 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 1019735 1141 0 0 1 0 SRX4413490 Unrestricted 0.0 single_particle_sort 3300022272 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Kiritimatiellaeota_bacterium_SCGC_AH-147-K21 Bigelow Laboratory for Ocean Sciences 3300022272 Metagenome - Single Particle Sort SPAdes 3.9.0 released by Jessica Jarett No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 688295 613 1 0 1 0 0.0 single_particle_sort 3300015497 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-L12 DOE Joint Genome Institute (JGI) 3300015497 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 242637 320 0 0 0 0 SRX3560347 Unrestricted 0.0 single_particle_sort 3300038210 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.G15 DOE Joint Genome Institute (JGI) 3300038210 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 768507 865 1 0 1 0 SRX9411034 Unrestricted 0.0 single_particle_sort 3300019677 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-L07 DOE Joint Genome Institute (JGI) 3300019677 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 286131 347 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300015858 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-G02 DOE Joint Genome Institute (JGI) 3300015858 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 169422 206 0 0 0 0 SRX3580200 Unrestricted 0.0 single_particle_sort 3300016130 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-274-N23 DOE Joint Genome Institute (JGI) 3300016130 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 522067 630 1 0 1 0 SRX3578300 Unrestricted 0.0 single_particle_sort 3300050884 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_E5_SVS DOE Joint Genome Institute (JGI) 3300050884 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 37726 47 0 0 0 0 Restricted 0.0 single_particle_sort 3300049976 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_O20_SVS DOE Joint Genome Institute (JGI) 3300049976 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 62417 79 0 0 0 0 Restricted 0.0 single_particle_sort 3300035741 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.K8 DOE Joint Genome Institute (JGI) 3300035741 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1732016 1807 2 0 1 0 SRX8857431 Unrestricted 0.0 single_particle_sort 3300035998 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.D20 DOE Joint Genome Institute (JGI) 3300035998 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 642433 669 1 0 1 0 SRX8856250 Unrestricted 0.0 single_particle_sort 3300035912 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_K8 DOE Joint Genome Institute (JGI) 3300035912 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 126122 157 0 0 1 0 SRX10045278 Unrestricted 0.0 single_particle_sort 3300050869 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_B6_SVS DOE Joint Genome Institute (JGI) 3300050869 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 80435 101 0 0 0 0 Restricted 0.0 single_particle_sort 3300032555 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.N17 DOE Joint Genome Institute (JGI) 3300032555 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 1347195 1308 1 0 1 0 SRX6426606 Unrestricted 0.0 single_particle_sort 3300036014 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.J21 DOE Joint Genome Institute (JGI) 3300036014 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 404911 438 1 0 0 0 SRX8857816 Unrestricted 0.0 single_particle_sort 3300014393 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.C17 DOE Joint Genome Institute (JGI) 3300014393 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 395770 421 0 0 0 0 SRX3368437 Unrestricted 0.0 single_particle_sort 3300041141 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.E13 DOE Joint Genome Institute (JGI) 3300041141 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 635970 718 0 0 0 0 SRX9653912 Unrestricted 0.0 single_particle_sort 3300049943 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_F5_SVS DOE Joint Genome Institute (JGI) 3300049943 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 90754 123 0 0 0 0 Restricted 0.0 single_particle_sort 3300016395 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown archaeum SCGC_AG-582-O21 DOE Joint Genome Institute (JGI) 3300016395 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 903437 958 1 0 1 0 SRX3580056 Unrestricted 0.0 single_particle_sort 3300018234 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-B05 DOE Joint Genome Institute (JGI) 3300018234 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 625887 633 0 0 1 0 SRX3981076 Unrestricted 0.0 single_particle_sort 3300022615 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Acidobacteriales bacterium JGI PCGPRD042217_1 DOE Joint Genome Institute (JGI) 3300022615 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 302385 332 0 0 0 0 SRX4414614 Unrestricted 0.0 single_particle_sort 3300035873 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.J13 DOE Joint Genome Institute (JGI) 3300035873 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 1014372 1048 1 0 1 0 SRX8857276 Unrestricted 0.0 single_particle_sort 3300019778 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Thioalkalivibrio sp. HL7711_P3F6 JGI 000155CP-E08 DOE Joint Genome Institute (JGI) 3300019778 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 12960 19 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033280 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.G12 DOE Joint Genome Institute (JGI) 3300033280 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 279724 311 1 0 1 0 SRX7630593 Unrestricted 0.0 single_particle_sort 3300015451 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-E14 DOE Joint Genome Institute (JGI) 3300015451 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 104762 162 0 0 0 0 SRX3560051 Unrestricted 0.0 single_particle_sort 3300032400 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.I20 DOE Joint Genome Institute (JGI) 3300032400 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 356978 328 0 0 0 0 SRX6433582 Unrestricted 0.0 single_particle_sort 3300035956 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.K17 DOE Joint Genome Institute (JGI) 3300035956 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1195976 1286 1 0 1 0 SRX8862692 Unrestricted 0.0 single_particle_sort 3300015397 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Omnitrophica bacterium SCGC_AG-128-M13 DOE Joint Genome Institute (JGI) 3300015397 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 734879 772 1 0 0 0 SRX3577029 Unrestricted 0.0 single_particle_sort 3300038223 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.G5 DOE Joint Genome Institute (JGI) 3300038223 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 409039 469 1 0 1 0 SRX9411057 Unrestricted 0.0 single_particle_sort 3300034476 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.D10 DOE Joint Genome Institute (JGI) 3300034476 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 733233 791 0 0 0 0 SRX8390211 Unrestricted 0.0 single_particle_sort 3300023745 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.C10 DOE Joint Genome Institute (JGI) 3300023745 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 63400 89 0 0 0 0 SRX4525003 Unrestricted 0.0 single_particle_sort 3300041200 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.D18 DOE Joint Genome Institute (JGI) 3300041200 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 484339 530 0 0 0 0 SRX9657095 Unrestricted 0.0 single_particle_sort 3300015883 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-G10 DOE Joint Genome Institute (JGI) 3300015883 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 230962 288 0 0 0 0 SRX3548485 Unrestricted 0.0 single_particle_sort 3300019962 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-F20 DOE Joint Genome Institute (JGI) 3300019962 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 344182 360 0 0 1 0 SRX4654449 Unrestricted 0.0 single_particle_sort 3300035846 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.E4 DOE Joint Genome Institute (JGI) 3300035846 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 685919 750 1 0 2 0 SRX8896900 Unrestricted 0.0 single_particle_sort 3300015757 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-C18 DOE Joint Genome Institute (JGI) 3300015757 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 157964 200 0 0 0 0 SRX3560794 Unrestricted 0.0 single_particle_sort 3300013031 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - DC4.5.2015 0309 DC4 p5 16S.C20.double-peak DOE Joint Genome Institute (JGI) 3300013031 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 144495 200 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300051122 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_N23_SVS DOE Joint Genome Institute (JGI) 3300051122 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 32944 48 0 0 0 0 Restricted 0.0 single_particle_sort 3300041258 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.J8 DOE Joint Genome Institute (JGI) 3300041258 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 772908 775 1 0 1 0 SRX9656329 Unrestricted 0.0 single_particle_sort 3300033905 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.N15 DOE Joint Genome Institute (JGI) 3300033905 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 182714 199 0 0 0 0 SRX7626529 Unrestricted 0.0 single_particle_sort 3300032383 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.L16 DOE Joint Genome Institute (JGI) 3300032383 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 403395 445 1 0 1 0 SRX6433344 Unrestricted 0.0 single_particle_sort 3300016323 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - BRC1_bacterium_SCGC_AG-636-K15 DOE Joint Genome Institute (JGI) 3300016323 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 786168 777 0 0 0 0 SRX3784359 Unrestricted 0.0 single_particle_sort 3300050992 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 173_C7_SVS DOE Joint Genome Institute (JGI) 3300050992 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 39771 75 0 0 0 0 Restricted 0.0 single_particle_sort 3300050918 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-G09 DOE Joint Genome Institute (JGI) 3300050918 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 621790 680 0 0 1 0 Restricted 0.0 single_particle_sort 3300016410 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Omnitrophica bacterium SCGC_AG-278-B03 DOE Joint Genome Institute (JGI) 3300016410 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 953720 1054 1 0 1 0 SRX3578350 Unrestricted 0.0 single_particle_sort 3300013892 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.M18 DOE Joint Genome Institute (JGI) 3300013892 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1056134 1264 0 0 1 0 SRX3366717 Unrestricted 0.0 single_particle_sort 3300019899 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-N12 DOE Joint Genome Institute (JGI) 3300019899 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 162210 186 0 0 0 0 SRX4663479 Unrestricted 0.0 single_particle_sort 3300041599 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.I20 DOE Joint Genome Institute (JGI) 3300041599 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1141545 1224 0 0 0 0 SRX14829610 Unrestricted 0.0 single_particle_sort 3300018362 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_I17 DOE Joint Genome Institute (JGI) 3300018362 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1740556 1625 1 0 1 0 SRX4649713 Unrestricted 0.0 single_particle_sort 3300016186 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-I08 DOE Joint Genome Institute (JGI) 3300016186 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 561220 719 0 0 0 0 SRX3560709 Unrestricted 0.0 single_particle_sort 3300036076 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_F12 DOE Joint Genome Institute (JGI) 3300036076 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 70834 94 0 0 0 0 SRX10046159 Unrestricted 0.0 single_particle_sort 3300041296 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.M13 DOE Joint Genome Institute (JGI) 3300041296 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 734017 754 0 0 0 0 SRX9656326 Unrestricted 0.0 single_particle_sort 3300014330 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.D19 DOE Joint Genome Institute (JGI) 3300014330 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 651499 798 1 0 2 0 SRX3366848 Unrestricted 0.0 single_particle_sort 3300015479 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-I10 DOE Joint Genome Institute (JGI) 3300015479 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 190188 244 1 0 1 0 SRX3560324 Unrestricted 0.0 single_particle_sort 3300071201 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_edMDA_E09_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071201 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 297480 379 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300036043 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_M22 DOE Joint Genome Institute (JGI) 3300036043 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 28158 38 0 0 0 0 SRX10077099 Unrestricted 0.0 single_particle_sort 3300016086 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacterium bacterium SCGC_AG-582-F07 DOE Joint Genome Institute (JGI) 3300016086 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 481548 568 1 0 1 0 SRX3579959 Unrestricted 0.0 single_particle_sort 3300032358 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.N5 DOE Joint Genome Institute (JGI) 3300032358 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 649810 948 0 0 0 0 SRX6433664 Unrestricted 0.0 single_particle_sort 3300021694 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.E7 DOE Joint Genome Institute (JGI) 3300021694 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 267589 330 1 0 1 0 SRX3993602 Unrestricted 0.0 single_particle_sort 3300018381 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_J9 DOE Joint Genome Institute (JGI) 3300018381 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 2185229 2085 0 0 1 0 SRX4649191 Unrestricted 0.0 single_particle_sort 3300016193 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-F04 DOE Joint Genome Institute (JGI) 3300016193 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 122540 165 0 0 0 0 SRX3562916 Unrestricted 0.0 single_particle_sort 3300016310 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-G22 DOE Joint Genome Institute (JGI) 3300016310 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 801064 763 0 0 0 0 SRX3577179 Unrestricted 0.0 single_particle_sort 3300015800 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-274-B03 DOE Joint Genome Institute (JGI) 3300015800 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 213867 259 1 0 1 0 SRX3578245 Unrestricted 0.0 single_particle_sort 3300033916 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.H18 DOE Joint Genome Institute (JGI) 3300033916 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 317509 389 0 0 0 0 SRX7626750 Unrestricted 0.0 single_particle_sort 3300018245 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-B18 DOE Joint Genome Institute (JGI) 3300018245 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 695218 808 0 0 0 0 SRX4815109 Unrestricted 0.0 single_particle_sort 3300023573 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.E20 DOE Joint Genome Institute (JGI) 3300023573 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 52842 96 0 0 0 0 SRX4547900 Unrestricted 0.0 single_particle_sort 3300016423 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - Chloroflexi_bacterium_SCGC_AG-640-J15 DOE Joint Genome Institute (JGI) 3300016423 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 1039961 1117 0 0 1 0 SRX3784363 Unrestricted 0.0 single_particle_sort 3300032712 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.N18 DOE Joint Genome Institute (JGI) 3300032712 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 1501389 2162 0 0 0 0 SRX6433672 Unrestricted 0.0 single_particle_sort 3300034699 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.2.H15 DOE Joint Genome Institute (JGI) 3300034699 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 2018852 2133 1 0 1 0 SRX8390386 Unrestricted 0.0 single_particle_sort 3300016093 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-F06 DOE Joint Genome Institute (JGI) 3300016093 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 509389 572 0 0 0 0 SRX3551008 Unrestricted 0.0 single_particle_sort 3300016598 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - Chloroflexi_bacterium_SCGC_AG-640-L14 DOE Joint Genome Institute (JGI) 3300016598 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 2215696 2107 0 0 1 0 SRX3784280 Unrestricted 0.0 single_particle_sort 3300033203 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.L16 DOE Joint Genome Institute (JGI) 3300033203 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 780218 745 1 0 0 0 SRX7629318 Unrestricted 0.0 single_particle_sort 3300016512 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-188-K13 DOE Joint Genome Institute (JGI) 3300016512 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 411853 438 1 0 1 0 SRX3578194 Unrestricted 0.0 single_particle_sort 3300014425 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.H15 DOE Joint Genome Institute (JGI) 3300014425 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 751916 881 0 0 0 0 SRX3368444 Unrestricted 0.0 single_particle_sort 3300035464 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_L13 DOE Joint Genome Institute (JGI) 3300035464 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 188502 226 1 0 0 0 SRX9539770 Unrestricted 0.0 single_particle_sort 3300033952 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.G10 DOE Joint Genome Institute (JGI) 3300033952 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 1097624 1044 0 0 1 0 SRX7630343 Unrestricted 0.0 single_particle_sort 3300019414 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16033 DOE Joint Genome Institute (JGI) 3300019414 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 1961572 2051 1 0 1 0 SRX3986857 Unrestricted 0.0 single_particle_sort 3300015379 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Omnitrophica bacterium SCGC_AG-128-I06 DOE Joint Genome Institute (JGI) 3300015379 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 386354 433 1 0 1 0 SRX3577009 Unrestricted 0.0 single_particle_sort 3300014430 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.D15 DOE Joint Genome Institute (JGI) 3300014430 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 758387 946 1 0 1 0 SRX3298913 Unrestricted 0.0 single_particle_sort 3300023734 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.M20 DOE Joint Genome Institute (JGI) 3300023734 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 73822 90 0 0 0 0 SRX4548055 Unrestricted 0.0 single_particle_sort 3300016556 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, USA - Atribacteria_bacterium_SCGC_AG-640-O07 DOE Joint Genome Institute (JGI) 3300016556 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Acidic Artesian spring Sediment Hot spring sediment 34.9956 -98.6889 7.5 1315405 1286 1 0 1 0 SRX3784270 Unrestricted 0.0 single_particle_sort 3300022254 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - unknown_bacterium_SCGC_AH-147-K10 Bigelow Laboratory for Ocean Sciences 3300022254 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 36197 46 0 0 0 0 0.0 single_particle_sort 3300033842 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.F22 DOE Joint Genome Institute (JGI) 3300033842 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 740226 800 0 0 0 0 SRX7630470 Unrestricted 0.0 single_particle_sort 3300033236 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.J22 DOE Joint Genome Institute (JGI) 3300033236 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 306078 363 1 0 0 0 SRX7630667 Unrestricted 0.0 single_particle_sort 3300018462 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Syntrophaceae_bacterium_SCGC_AG-650-M05 DOE Joint Genome Institute (JGI) 3300018462 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1778852 1700 1 0 1 0 SRX3981813 Unrestricted 0.0 single_particle_sort 3300016259 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG_AG-578-J17 DOE Joint Genome Institute (JGI) 3300016259 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 547571 641 1 0 0 0 SRX3579255 Unrestricted 0.0 single_particle_sort 3300050867 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_B2_SVS DOE Joint Genome Institute (JGI) 3300050867 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 12531 25 0 0 0 0 Restricted 0.0 single_particle_sort 3300010802 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_26_SCGC_AG-138-K05 DOE Joint Genome Institute (JGI) 3300010802 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 374495 468 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023593 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.D20 DOE Joint Genome Institute (JGI) 3300023593 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 380657 432 0 0 0 0 SRX4415566 Unrestricted 0.0 single_particle_sort 3300023098 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - Fervidibacteria bacterium JGI MDM2 DC4-3-E18 DOE Joint Genome Institute (JGI) 3300023098 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 980194 1144 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300036083 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_E15 DOE Joint Genome Institute (JGI) 3300036083 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 64919 88 0 0 0 0 SRX10046323 Unrestricted 0.0 single_particle_sort 3300024606 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-G13 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024606 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 12082 19 0 0 0 0 0.0 single_particle_sort 3300016046 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-L17 DOE Joint Genome Institute (JGI) 3300016046 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 490233 528 0 0 0 0 SRX3560736 Unrestricted 0.0 single_particle_sort 3300021674 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.L10 DOE Joint Genome Institute (JGI) 3300021674 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 210834 244 0 0 1 0 SRX4005487 Unrestricted 0.0 single_particle_sort 3300016173 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-E10 DOE Joint Genome Institute (JGI) 3300016173 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 619719 697 0 0 1 0 SRX3563238 Unrestricted 0.0 single_particle_sort 3300037908 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.F20 DOE Joint Genome Institute (JGI) 3300037908 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 1042671 1416 0 0 1 0 SRX9410334 Unrestricted 0.0 single_particle_sort 3300050835 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_G5_SVS DOE Joint Genome Institute (JGI) 3300050835 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 35876 81 0 0 0 0 Restricted 0.0 single_particle_sort 3300036728 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.N8.redo DOE Joint Genome Institute (JGI) 3300036728 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 1459408 1603 2 0 1 0 SRX8905272 Unrestricted 0.0 single_particle_sort 3300016073 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-582-B23 DOE Joint Genome Institute (JGI) 3300016073 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 455940 554 1 0 1 0 SRX3580157 Unrestricted 0.0 single_particle_sort 3300033766 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_C16 DOE Joint Genome Institute (JGI) 3300033766 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 13777 13 0 0 0 0 SRX7525349 Unrestricted 0.0 single_particle_sort 3300024806 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-B21 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024806 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 204363 257 0 0 0 0 0.0 single_particle_sort 3300023428 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.K12 DOE Joint Genome Institute (JGI) 3300023428 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 2050216 2183 1 0 1 0 SRX4520607 Unrestricted 0.0 single_particle_sort 3300016578 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Sorted cell/s from deep shales in West Virginia, USA - MahaSR_06_I3 DOE Joint Genome Institute (JGI) 3300016578 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back deep subsurface 39.6017 -79.9761 1690730 1816 1 0 1 0 SRX3577101 Unrestricted 0.0 single_particle_sort 3300019400 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16036 DOE Joint Genome Institute (JGI) 3300019400 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 1623084 1710 1 0 1 0 SRX3987086 Unrestricted 0.0 single_particle_sort 3300016146 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown bacterium SCGC_AG-657-L16 DOE Joint Genome Institute (JGI) 3300016146 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 640710 650 0 0 0 0 SRX3601680 Unrestricted 0.0 single_particle_sort 3300015399 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Parcubacteria bacterium SCGC_AG-128-L09 DOE Joint Genome Institute (JGI) 3300015399 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 688640 779 0 0 0 0 SRX3577030 Unrestricted 0.0 single_particle_sort 3300018441 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_M11 DOE Joint Genome Institute (JGI) 3300018441 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1741723 1737 1 0 1 0 SRX4650613 Unrestricted 0.0 single_particle_sort 3300024633 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-B23 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024633 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 50838 63 0 0 0 0 0.0 single_particle_sort 3300024701 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-E10 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024701 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 95607 121 0 0 0 0 0.0 single_particle_sort 3300033861 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.E7 DOE Joint Genome Institute (JGI) 3300033861 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 218444 273 0 0 0 0 SRX7626216 Unrestricted 0.0 single_particle_sort 3300032376 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.G5 DOE Joint Genome Institute (JGI) 3300032376 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 545207 600 1 0 1 0 SRX6433334 Unrestricted 0.0 single_particle_sort 3300033368 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.E8 DOE Joint Genome Institute (JGI) 3300033368 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 243789 300 0 0 0 0 SRX7627279 Unrestricted 0.0 single_particle_sort 3300015759 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-E05 DOE Joint Genome Institute (JGI) 3300015759 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 150555 205 0 0 0 0 SRX3560981 Unrestricted 0.0 single_particle_sort 3300015814 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-K15 DOE Joint Genome Institute (JGI) 3300015814 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 226775 303 0 0 0 0 SRX3563844 Unrestricted 0.0 single_particle_sort 3300023156 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.D4 DOE Joint Genome Institute (JGI) 3300023156 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1718240 1667 1 0 1 0 SRX4510439 Unrestricted 0.0 single_particle_sort 3300016304 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacterium bacterium SCGC_AG-582-E20 DOE Joint Genome Institute (JGI) 3300016304 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 637134 755 0 0 0 0 SRX3579953 Unrestricted 0.0 single_particle_sort 3300032343 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.K12 DOE Joint Genome Institute (JGI) 3300032343 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 465132 509 1 0 1 0 SRX6433342 Unrestricted 0.0 single_particle_sort 3300024833 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-K21 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024833 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 331809 427 0 0 0 0 0.0 single_particle_sort 3300024407 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.I10 DOE Joint Genome Institute (JGI) 3300024407 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 175183 224 0 0 0 0 SRX4547820 Unrestricted 0.0 single_particle_sort 3300019555 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_J20 DOE Joint Genome Institute (JGI) 3300019555 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 35929 43 0 0 0 0 SRX4652808 Unrestricted 0.0 single_particle_sort 3300033661 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P1_O2 DOE Joint Genome Institute (JGI) 3300033661 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 23825 30 0 0 0 0 SRX7530075 Unrestricted 0.0 single_particle_sort 3300024615 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-N08 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024615 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 42076 54 0 0 0 0 0.0 single_particle_sort 3300033882 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.G22 DOE Joint Genome Institute (JGI) 3300033882 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 598484 687 0 0 0 0 SRX7626826 Unrestricted 0.0 single_particle_sort 3300023821 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.F10 DOE Joint Genome Institute (JGI) 3300023821 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 436358 536 0 0 0 0 SRX4549807 Unrestricted 0.0 single_particle_sort 3300041602 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.J7 DOE Joint Genome Institute (JGI) 3300041602 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1216131 1290 0 0 1 0 SRX14830628 Unrestricted 0.0 single_particle_sort 3300036058 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_G5 DOE Joint Genome Institute (JGI) 3300036058 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 91287 113 0 0 0 0 SRX10045894 Unrestricted 0.0 single_particle_sort 3300048756 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_E2_SVS DOE Joint Genome Institute (JGI) 3300048756 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 65207 104 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023328 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.K20 DOE Joint Genome Institute (JGI) 3300023328 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 474360 535 1 0 1 0 SRX4520372 Unrestricted 0.0 single_particle_sort 3300038121 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .H21 DOE Joint Genome Institute (JGI) 3300038121 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 228837 260 0 0 0 0 SRX9411745 Unrestricted 0.0 single_particle_sort 3300050768 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_N23_SVS DOE Joint Genome Institute (JGI) 3300050768 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 42873 50 0 0 0 0 Restricted 0.0 single_particle_sort 3300071316 *Microbiome Permanent Draft Comparing whole genome amplification chemistries for bacterial single cell genomics Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - scBac_WGAX_EnviBac_sc_well6D_S99 Stanford University 3300071316 Metagenome - Single Particle Sort Spades v. 3.15.3 released per request -- IMGSUPP-4358 No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 864264 858 1 0 1 0 0.0 single_particle_sort 3300036627 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.G16 DOE Joint Genome Institute (JGI) 3300036627 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 808813 786 0 0 0 0 SRX8902888 Unrestricted 0.0 single_particle_sort 3300033682 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P9_M15 DOE Joint Genome Institute (JGI) 3300033682 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 18431 17 0 0 0 0 SRX7531295 Unrestricted 0.0 single_particle_sort 3300024815 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-I18 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024815 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 236476 276 0 0 0 0 0.0 single_particle_sort 3300023621 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.J13 DOE Joint Genome Institute (JGI) 3300023621 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 1188793 1328 0 0 0 0 SRX4415435 Unrestricted 0.0 single_particle_sort 3300035830 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0815.Sybr.01.E15 DOE Joint Genome Institute (JGI) 3300035830 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 996137 1033 0 0 1 0 SRX8894439 Unrestricted 0.0 single_particle_sort 3300019502 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Thioalkalivibrio sp. HL7711_P3F6 JGI 000155CP-M11 DOE Joint Genome Institute (JGI) 3300019502 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 571583 600 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300034555 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.D13 DOE Joint Genome Institute (JGI) 3300034555 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 798738 838 1 0 0 0 SRX8393329 Unrestricted 0.0 single_particle_sort 3300050972 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_B13_SVS DOE Joint Genome Institute (JGI) 3300050972 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 25003 41 0 0 0 0 Restricted 0.0 single_particle_sort 3300038021 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.I21 DOE Joint Genome Institute (JGI) 3300038021 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 770883 1007 0 0 0 0 SRX9411073 Unrestricted 0.0 single_particle_sort 3300015029 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.M5 DOE Joint Genome Institute (JGI) 3300015029 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 379922 454 1 0 1 0 Restricted 0.0 single_particle_sort 3300041276 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.K19 DOE Joint Genome Institute (JGI) 3300041276 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 860961 861 0 0 0 0 SRX9722255 Unrestricted 0.0 single_particle_sort 3300036096 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_K18 DOE Joint Genome Institute (JGI) 3300036096 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 20756 23 0 0 0 0 SRX10046522 Unrestricted 0.0 single_particle_sort 3300038275 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.L6 DOE Joint Genome Institute (JGI) 3300038275 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 26850 53 0 0 0 0 SRX9411441 Unrestricted 0.0 single_particle_sort 3300035825 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0813.Sybr.01.L9 DOE Joint Genome Institute (JGI) 3300035825 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 1455421 1577 1 0 1 0 SRX8894346 Unrestricted 0.0 single_particle_sort 3300023586 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.H10 DOE Joint Genome Institute (JGI) 3300023586 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 202942 276 0 0 0 0 SRX4415636 Unrestricted 0.0 single_particle_sort 3300041243 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.F17 DOE Joint Genome Institute (JGI) 3300041243 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1673760 1917 0 0 0 0 SRX9650192 Unrestricted 0.0 single_particle_sort 3300033468 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.M9 DOE Joint Genome Institute (JGI) 3300033468 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 917726 841 1 0 0 0 SRX7630337 Unrestricted 0.0 single_particle_sort 3300023726 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR46.Redo.05.G10 DOE Joint Genome Institute (JGI) 3300023726 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.242 21.4899 103709 134 0 0 0 0 SRX4391216 Unrestricted 0.0 single_particle_sort 3300018285 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_E15 DOE Joint Genome Institute (JGI) 3300018285 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 963276 1018 0 0 0 0 SRX4647589 Unrestricted 0.0 single_particle_sort 3300033224 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.I14 DOE Joint Genome Institute (JGI) 3300033224 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 460554 526 0 0 0 0 SRX7629287 Unrestricted 0.0 single_particle_sort 3300015129 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-O09 DOE Joint Genome Institute (JGI) 3300015129 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 504125 575 0 0 0 0 SRX3578346 Unrestricted 0.0 single_particle_sort 3300018341 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Ignavibacteria_bacterium_SCGC_AG-650-O06 DOE Joint Genome Institute (JGI) 3300018341 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1584092 1441 1 0 1 0 SRX3981457 Unrestricted 0.0 single_particle_sort 3300050813 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_O8_SVS DOE Joint Genome Institute (JGI) 3300050813 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 91858 139 0 0 0 0 Restricted 0.0 single_particle_sort 3300019679 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-574-I10 DOE Joint Genome Institute (JGI) 3300019679 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 360718 455 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300015499 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-K17 DOE Joint Genome Institute (JGI) 3300015499 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 240830 320 0 0 0 0 SRX3549988 Unrestricted 0.0 single_particle_sort 3300034458 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.I8 DOE Joint Genome Institute (JGI) 3300034458 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 521910 601 1 0 1 0 SRX8389547 Unrestricted 0.0 single_particle_sort 3300041214 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.E22 DOE Joint Genome Institute (JGI) 3300041214 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2823832 2889 1 0 1 0 SRX9651802 Unrestricted 0.0 single_particle_sort 3300050844 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_I6_SVS DOE Joint Genome Institute (JGI) 3300050844 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 106671 135 0 0 0 0 Restricted 0.0 single_particle_sort 3300035978 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.F16 DOE Joint Genome Institute (JGI) 3300035978 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 971050 1026 0 0 0 0 SRX8854175 Unrestricted 0.0 single_particle_sort 3300041162 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.I8 DOE Joint Genome Institute (JGI) 3300041162 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 783835 837 1 0 1 0 SRX9677235 Unrestricted 0.0 single_particle_sort 3300034697 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.3.G17 DOE Joint Genome Institute (JGI) 3300034697 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 1767109 1882 0 0 1 0 SRX8390385 Unrestricted 0.0 single_particle_sort 3300019396 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16014 DOE Joint Genome Institute (JGI) 3300019396 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 1642802 1653 1 0 1 0 SRX3985668 Unrestricted 0.0 single_particle_sort 3300050954 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-956-N16 DOE Joint Genome Institute (JGI) 3300050954 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1197303 -42.124435 1157492 1270 1 0 1 0 Restricted 0.0 single_particle_sort 3300015988 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Microgenometes bacterium SCGC_AG-274-F21 DOE Joint Genome Institute (JGI) 3300015988 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 412398 459 1 0 1 0 SRX3578248 Unrestricted 0.0 single_particle_sort 3300035762 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.D21 DOE Joint Genome Institute (JGI) 3300035762 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 890268 1038 0 0 0 0 SRX8901187 Unrestricted 0.0 single_particle_sort 3300016375 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_E18 DOE Joint Genome Institute (JGI) 3300016375 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 772213 879 0 0 0 0 SRX4065903 Unrestricted 0.0 single_particle_sort 3300014991 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.C10 DOE Joint Genome Institute (JGI) 3300014991 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 195819 240 0 0 0 0 Restricted 0.0 single_particle_sort 3300036100 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_I19 DOE Joint Genome Institute (JGI) 3300036100 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 80477 101 0 0 0 0 SRX10046543 Unrestricted 0.0 single_particle_sort 3300049958 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_J22_SVS DOE Joint Genome Institute (JGI) 3300049958 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 13784 21 0 0 0 0 Restricted 0.0 single_particle_sort 3300019651 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-J11 DOE Joint Genome Institute (JGI) 3300019651 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 162298 176 0 0 0 0 SRX3959911 Unrestricted 0.0 single_particle_sort 3300015377 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Omnitrophica bacterium SCGC_AG-128-F11 DOE Joint Genome Institute (JGI) 3300015377 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 126213 148 1 0 0 0 SRX3574393 Unrestricted 0.0 single_particle_sort 3300035893 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.L13 DOE Joint Genome Institute (JGI) 3300035893 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 359671 427 0 0 0 0 SRX8898326 Unrestricted 0.0 single_particle_sort 3300019798 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-I21 DOE Joint Genome Institute (JGI) 3300019798 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 239676 314 0 0 1 0 SRX4663275 Unrestricted 0.0 single_particle_sort 3300019941 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-E12 DOE Joint Genome Institute (JGI) 3300019941 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 22563 27 0 0 0 0 SRX4654052 Unrestricted 0.0 single_particle_sort 3300021805 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.K9 DOE Joint Genome Institute (JGI) 3300021805 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 772714 799 0 0 0 0 SRX3989582 Unrestricted 0.0 single_particle_sort 3300036732 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.I10.redo DOE Joint Genome Institute (JGI) 3300036732 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 2367832 2690 1 0 2 0 SRX8907392 Unrestricted 0.0 single_particle_sort 3300036000 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.M16 DOE Joint Genome Institute (JGI) 3300036000 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 525172 537 1 0 0 0 SRX8856747 Unrestricted 0.0 single_particle_sort 3300016257 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-G20 DOE Joint Genome Institute (JGI) 3300016257 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 570035 630 1 0 0 0 SRX3562927 Unrestricted 0.0 single_particle_sort 3300023525 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.E22 DOE Joint Genome Institute (JGI) 3300023525 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 846785 1006 1 0 1 0 SRX4548445 Unrestricted 0.0 single_particle_sort 3300016475 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown bacterium SCGC_AG-657-A10 DOE Joint Genome Institute (JGI) 3300016475 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 1498394 1518 0 0 0 0 SRX3593700 Unrestricted 0.0 single_particle_sort 3300019496 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Thioalkalivibrio sp. HL7711_P3F6 JGI 000155CP-H15 DOE Joint Genome Institute (JGI) 3300019496 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 279955 316 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015843 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-J15 DOE Joint Genome Institute (JGI) 3300015843 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 259589 347 0 0 0 0 SRX3560940 Unrestricted 0.0 single_particle_sort 3300035886 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.F11 DOE Joint Genome Institute (JGI) 3300035886 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 551726 615 0 0 0 0 SRX8897918 Unrestricted 0.0 single_particle_sort 3300015676 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Jinze hot spring sediment, Tengchong, China - JNZ.1.2014 1216 MDM2 JNZ p1 16S.M15.double-peak DOE Joint Genome Institute (JGI) 3300015676 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 25.4413 98.46 1568756 1436 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300024890 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.05.D12 DOE Joint Genome Institute (JGI) 3300024890 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 1107824 1196 0 0 0 0 SRX4390959 Unrestricted 0.0 single_particle_sort 3300021652 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.H13 DOE Joint Genome Institute (JGI) 3300021652 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 86354 116 0 0 0 0 SRX4009658 Unrestricted 0.0 single_particle_sort 3300038204 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.D9 DOE Joint Genome Institute (JGI) 3300038204 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 583623 798 0 0 1 0 SRX9411030 Unrestricted 0.0 single_particle_sort 3300051794 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_D19_SVS DOE Joint Genome Institute (JGI) 3300051794 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 12676 23 0 0 0 0 Restricted 0.0 single_particle_sort 3300021711 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.N5 DOE Joint Genome Institute (JGI) 3300021711 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 410123 444 0 0 1 0 SRX4009357 Unrestricted 0.0 single_particle_sort 3300034712 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.2.D9 DOE Joint Genome Institute (JGI) 3300034712 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 2343732 2448 1 0 1 0 SRX8390470 Unrestricted 0.0 single_particle_sort 3300014446 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.E21 DOE Joint Genome Institute (JGI) 3300014446 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1046009 1259 1 0 1 0 SRX3368332 Unrestricted 0.0 single_particle_sort 3300015953 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-L07 DOE Joint Genome Institute (JGI) 3300015953 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 342823 416 0 0 0 0 SRX3548612 Unrestricted 0.0 single_particle_sort 3300024066 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.L22 DOE Joint Genome Institute (JGI) 3300024066 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 283419 311 0 0 0 0 SRX4501425 Unrestricted 0.0 single_particle_sort 3300015643 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from a deep sea mud volcano in Anaximander Mountains, Eastern Mediterranean Sea - B17.2.2014 11 14 MDM2 B17 p2 16S.H4.double-seq DOE Joint Genome Institute (JGI) 3300015643 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Mud volcano Marine Unclassified Deep sea volcano 35.7369 30.475 539751 622 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033240 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.K14 DOE Joint Genome Institute (JGI) 3300033240 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 246330 218 0 0 0 0 SRX7630599 Unrestricted 0.0 single_particle_sort 3300015876 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown_bacterium_SCGC_AG-516-C08 DOE Joint Genome Institute (JGI) 3300015876 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Groundwater -28.24 26.8 8.55 168373 258 0 0 0 0 SRX3784215 Unrestricted 0.0 single_particle_sort 3300024690 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-P03 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024690 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 93763 110 0 0 0 0 0.0 single_particle_sort 3300014473 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.F05 DOE Joint Genome Institute (JGI) 3300014473 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1384128 1641 0 0 0 0 SRX3298946 Unrestricted 0.0 single_particle_sort 3300018226 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_I20 DOE Joint Genome Institute (JGI) 3300018226 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 601121 642 0 0 0 0 SRX4652226 Unrestricted 0.0 single_particle_sort 3300023785 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.M15 DOE Joint Genome Institute (JGI) 3300023785 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 325159 338 0 0 0 0 SRX4548061 Unrestricted 0.0 single_particle_sort 3300016291 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown archaeum SCGC_AG-278-O21 DOE Joint Genome Institute (JGI) 3300016291 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 612717 743 1 0 0 0 SRX3578542 Unrestricted 0.0 single_particle_sort 3300041597 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.J4 DOE Joint Genome Institute (JGI) 3300041597 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 821106 900 2 0 1 0 SRX10044856 Unrestricted 0.0 single_particle_sort 3300015771 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-H14 DOE Joint Genome Institute (JGI) 3300015771 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 157926 224 0 0 0 0 SRX3561042 Unrestricted 0.0 single_particle_sort 3300041181 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.F7 DOE Joint Genome Institute (JGI) 3300041181 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2947215 2837 1 0 0 0 SRX9523942 Unrestricted 0.0 single_particle_sort 3300019897 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-N22 DOE Joint Genome Institute (JGI) 3300019897 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 104273 132 0 0 0 0 SRX4663487 Unrestricted 0.0 single_particle_sort 3300037950 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.F4 DOE Joint Genome Institute (JGI) 3300037950 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 877288 832 0 0 0 0 SRX9410973 Unrestricted 0.0 single_particle_sort 3300023332 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.H10 DOE Joint Genome Institute (JGI) 3300023332 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 686291 655 0 0 0 0 SRX4548790 Unrestricted 0.0 single_particle_sort 3300034756 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.1.L18 DOE Joint Genome Institute (JGI) 3300034756 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 1684331 1750 1 0 1 0 SRX8390384 Unrestricted 0.0 single_particle_sort 3300021616 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.J13 DOE Joint Genome Institute (JGI) 3300021616 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 30817 42 0 0 0 0 SRX4006408 Unrestricted 0.0 single_particle_sort 3300019383 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent sediment, Guaymas Basin, Mexico - 6V_4868_13_28 DOE Joint Genome Institute (JGI) 3300019383 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.001 -110.5999 183566 301 0 0 0 0 SRX3974127 Unrestricted 0.0 single_particle_sort 3300015477 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-N07 DOE Joint Genome Institute (JGI) 3300015477 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 191702 238 0 0 0 0 SRX3550866 Unrestricted 0.0 single_particle_sort 3300035781 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.H10 DOE Joint Genome Institute (JGI) 3300035781 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 707005 770 1 0 1 0 SRX8858257 Unrestricted 0.0 single_particle_sort 3300023530 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.J17 DOE Joint Genome Institute (JGI) 3300023530 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 942200 1013 0 0 0 0 SRX4548442 Unrestricted 0.0 single_particle_sort 3300022292 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Kiritimatiellaeota_bacterium_SCGC_AH-151-C14 Bigelow Laboratory for Ocean Sciences 3300022292 Metagenome - Single Particle Sort SPAdes 3.9.0 released by Jessica Jarett No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 1629841 1422 1 0 1 0 0.0 single_particle_sort 3300021816 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.I22 DOE Joint Genome Institute (JGI) 3300021816 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 858011 991 1 0 1 0 SRX3989547 Unrestricted 0.0 single_particle_sort 3300041306 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.N17 DOE Joint Genome Institute (JGI) 3300041306 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1727857 1775 1 0 1 0 SRX9646390 Unrestricted 0.0 single_particle_sort 3300013034 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - DC4.3.2014 1216 MDM DC4 p3 16S.E12.double-seq DOE Joint Genome Institute (JGI) 3300013034 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 395688 533 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300024402 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.L7 DOE Joint Genome Institute (JGI) 3300024402 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 175475 200 0 0 0 0 SRX4547862 Unrestricted 0.0 single_particle_sort 3300033386 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.L8 DOE Joint Genome Institute (JGI) 3300033386 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 244009 293 0 0 0 0 SRX7627277 Unrestricted 0.0 single_particle_sort 3300014974 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-2.F20 DOE Joint Genome Institute (JGI) 3300014974 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 105658 139 1 0 0 0 Restricted 0.0 single_particle_sort 3300021989 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - TA06 bacterium JGI MDM2 NGM80-2-H22 DOE Joint Genome Institute (JGI) 3300021989 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 260215 333 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300050793 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_H8_SVS DOE Joint Genome Institute (JGI) 3300050793 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 17056 20 0 0 0 0 Restricted 0.0 single_particle_sort 3300015454 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-B10 DOE Joint Genome Institute (JGI) 3300015454 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 130405 164 0 0 0 0 SRX3554544 Unrestricted 0.0 single_particle_sort 3300019969 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-C14 DOE Joint Genome Institute (JGI) 3300019969 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 436948 505 1 0 0 0 SRX4653693 Unrestricted 0.0 single_particle_sort 3300018231 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_B9 DOE Joint Genome Institute (JGI) 3300018231 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 609843 625 0 0 0 0 SRX4652765 Unrestricted 0.0 single_particle_sort 3300033788 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P1_C8 DOE Joint Genome Institute (JGI) 3300033788 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 31204 33 0 0 0 0 SRX7525247 Unrestricted 0.0 single_particle_sort 3300038180 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.G4 DOE Joint Genome Institute (JGI) 3300038180 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 1065342 1286 0 0 1 0 SRX9411804 Unrestricted 0.0 single_particle_sort 3300041333 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.F16 DOE Joint Genome Institute (JGI) 3300041333 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 993479 984 0 0 0 0 SRX9646882 Unrestricted 0.0 single_particle_sort 3300023880 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.I11 DOE Joint Genome Institute (JGI) 3300023880 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 688541 819 1 0 0 0 SRX4519548 Unrestricted 0.0 single_particle_sort 3300050862 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_A2_SVS DOE Joint Genome Institute (JGI) 3300050862 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 31031 42 0 0 0 0 Restricted 0.0 single_particle_sort 3300035919 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_B12 DOE Joint Genome Institute (JGI) 3300035919 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 80028 113 0 0 0 0 SRX10045568 Unrestricted 0.0 single_particle_sort 3300041144 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.I20 DOE Joint Genome Institute (JGI) 3300041144 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2601803 2520 1 0 1 0 SRX9654043 Unrestricted 0.0 single_particle_sort 3300010807 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_33_SCGC_AG-138-L21 DOE Joint Genome Institute (JGI) 3300010807 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 397000 492 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300036011 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.C16 DOE Joint Genome Institute (JGI) 3300036011 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1169768 1226 0 0 0 0 SRX8857762 Unrestricted 0.0 single_particle_sort 3300024795 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-G22 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024795 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 182973 240 0 0 0 0 0.0 single_particle_sort 3300018170 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_K21 DOE Joint Genome Institute (JGI) 3300018170 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 977397 992 0 0 0 0 SRX4646616 Unrestricted 0.0 single_particle_sort 3300038080 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .K5 DOE Joint Genome Institute (JGI) 3300038080 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 795613 958 0 0 0 0 SRX9411530 Unrestricted 0.0 single_particle_sort 3300044103 *Microbiome Permanent Draft High-throughput characterization of viral-host interactions Sorted cell/s from lab media in Berkeley, California, United States - SPS_viraltag_JGI_H612-H19 DOE Joint Genome Institute (JGI) 3300044103 Metagenome - Single Particle Sort spades v. 3.15.0 released based on JGI ITS No Yes sroux@lbl.gov Simon Roux No Engineered Lab enrichment Unclassified Defined media Unclassified Defined media 37.8777 -122.251 20599 29 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035744 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.C15 DOE Joint Genome Institute (JGI) 3300035744 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1087455 1162 0 0 0 0 SRX8857531 Unrestricted 0.0 single_particle_sort 3300021700 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.K14 DOE Joint Genome Institute (JGI) 3300021700 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 397050 443 0 0 0 0 SRX4006463 Unrestricted 0.0 single_particle_sort 3300050881 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_E21_SVS DOE Joint Genome Institute (JGI) 3300050881 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 74800 83 0 0 0 0 Restricted 0.0 single_particle_sort 3300022048 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Atribacteria bacterium JGI MDM2 LBsed72-1-G7 DOE Joint Genome Institute (JGI) 3300022048 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment freshwater sediment 53.7598 107.9791 980179 1067 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300023163 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.M8 DOE Joint Genome Institute (JGI) 3300023163 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1908888 1831 1 0 1 0 SRX4509209 Unrestricted 0.0 single_particle_sort 3300032509 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.N6 DOE Joint Genome Institute (JGI) 3300032509 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 341682 437 1 0 1 0 SRX6452136 Unrestricted 0.0 single_particle_sort 3300048717 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_H10_SVS DOE Joint Genome Institute (JGI) 3300048717 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 136530 174 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300041315 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.G18 DOE Joint Genome Institute (JGI) 3300041315 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 649633 648 0 0 0 0 SRX9646790 Unrestricted 0.0 single_particle_sort 3300016274 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown archaeum SCGC_AG-278-K15 DOE Joint Genome Institute (JGI) 3300016274 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 507906 702 1 0 1 0 SRX3578389 Unrestricted 0.0 single_particle_sort 3300015794 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-D17 DOE Joint Genome Institute (JGI) 3300015794 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 183348 251 0 0 0 0 SRX3560638 Unrestricted 0.0 single_particle_sort 3300022279 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - unknown_bacterium_SCGC_AH-147-N18 Bigelow Laboratory for Ocean Sciences 3300022279 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 638841 802 0 0 0 0 0.0 single_particle_sort 3300033971 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.D17 DOE Joint Genome Institute (JGI) 3300033971 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 448765 499 0 0 0 0 SRX7630397 Unrestricted 0.0 single_particle_sort 3300071275 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_Wchmk_H10_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071275 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 589365 692 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300036622 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.C13 DOE Joint Genome Institute (JGI) 3300036622 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 1037780 975 1 0 1 0 SRX8902865 Unrestricted 0.0 single_particle_sort 3300022960 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.H14 DOE Joint Genome Institute (JGI) 3300022960 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 320423 352 0 0 1 0 SRX4416810 Unrestricted 0.0 single_particle_sort 3300019984 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-F8 DOE Joint Genome Institute (JGI) 3300019984 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 803146 811 0 0 0 0 SRX4654472 Unrestricted 0.0 single_particle_sort 3300041607 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.2.F12 DOE Joint Genome Institute (JGI) 3300041607 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 5605222 5373 0 0 0 0 SRX14831392 Unrestricted 0.0 single_particle_sort 3300032672 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.G11 DOE Joint Genome Institute (JGI) 3300032672 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 1109243 1198 0 0 0 0 SRX6426246 Unrestricted 0.0 single_particle_sort 3300050977 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_N5_SVS DOE Joint Genome Institute (JGI) 3300050977 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 56884 71 0 0 0 0 Restricted 0.0 single_particle_sort 3300050786 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_F20_SVS DOE Joint Genome Institute (JGI) 3300050786 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 35150 56 0 0 0 0 Restricted 0.0 single_particle_sort 3300033687 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P1_A10 DOE Joint Genome Institute (JGI) 3300033687 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 23016 25 0 0 0 0 SRX7525237 Unrestricted 0.0 single_particle_sort 3300019507 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from Echinus Geyser water, Yellowstone National Park, Wyoming, United States - NAG2 archaeon OSP418 JGI 000156CP-E12 DOE Joint Genome Institute (JGI) 3300019507 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Acidic hot water 44.7225 -110.7014 553622 712 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300038003 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.K4 DOE Joint Genome Institute (JGI) 3300038003 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 821271 787 0 0 1 0 SRX9409556 Unrestricted 0.0 single_particle_sort 3300033330 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.L5 DOE Joint Genome Institute (JGI) 3300033330 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 165301 199 0 0 0 0 SRX7630491 Unrestricted 0.0 single_particle_sort 3300024596 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-E07 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024596 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 18826 35 0 0 0 0 0.0 single_particle_sort 3300033649 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P2_M15 DOE Joint Genome Institute (JGI) 3300033649 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 20027 23 0 0 0 0 SRX7529891 Unrestricted 0.0 single_particle_sort 3300023731 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.L9 DOE Joint Genome Institute (JGI) 3300023731 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 162620 250 0 0 0 0 SRX4501426 Unrestricted 0.0 single_particle_sort 3300023465 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.F10 DOE Joint Genome Institute (JGI) 3300023465 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 835044 854 1 0 1 0 SRX4548441 Unrestricted 0.0 single_particle_sort 3300041120 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.F19 DOE Joint Genome Institute (JGI) 3300041120 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 173539 202 0 0 0 0 SRX9654818 Unrestricted 0.0 single_particle_sort 3300023603 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.I15 DOE Joint Genome Institute (JGI) 3300023603 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 589754 695 1 0 1 0 SRX4416505 Unrestricted 0.0 single_particle_sort 3300033959 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.N14 DOE Joint Genome Institute (JGI) 3300033959 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 3331138 3108 0 0 1 0 SRX7630365 Unrestricted 0.0 single_particle_sort 3300022251 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Acetothermia_bacterium_SCGC_AH-151-C09 Bigelow Laboratory for Ocean Sciences 3300022251 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 1390500 1511 1 0 1 0 0.0 single_particle_sort 3300015570 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-M06 DOE Joint Genome Institute (JGI) 3300015570 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 671661 744 0 0 1 0 SRX3550851 Unrestricted 0.0 single_particle_sort 3300036737 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.G11.redo DOE Joint Genome Institute (JGI) 3300036737 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 1834978 1748 1 0 1 0 SRX8908812 Unrestricted 0.0 single_particle_sort 3300019411 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16017 DOE Joint Genome Institute (JGI) 3300019411 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 1870339 2089 1 0 1 0 SRX3985670 Unrestricted 0.0 single_particle_sort 3300016252 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown archaeum SCGC_AG-278-N14 DOE Joint Genome Institute (JGI) 3300016252 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 457258 609 1 0 1 0 SRX3578498 Unrestricted 0.0 single_particle_sort 3300038103 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .G5 DOE Joint Genome Institute (JGI) 3300038103 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 51434 74 0 0 0 0 SRX9411630 Unrestricted 0.0 single_particle_sort 3300033849 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.I5 DOE Joint Genome Institute (JGI) 3300033849 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 540453 569 0 0 0 0 SRX7626163 Unrestricted 0.0 single_particle_sort 3300010750 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.04.L6 DOE Joint Genome Institute (JGI) 3300010750 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 152526 192 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300021796 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.K21 DOE Joint Genome Institute (JGI) 3300021796 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 468771 536 0 0 0 0 SRX3989968 Unrestricted 0.0 single_particle_sort 3300035720 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_I15 DOE Joint Genome Institute (JGI) 3300035720 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 79081 114 0 0 1 0 SRX10045720 Unrestricted 0.0 single_particle_sort 3300023803 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.L6 DOE Joint Genome Institute (JGI) 3300023803 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 405059 459 0 0 0 0 SRX4548075 Unrestricted 0.0 single_particle_sort 3300038036 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.05.E19 DOE Joint Genome Institute (JGI) 3300038036 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 40099 67 0 0 0 0 SRX9411217 Unrestricted 0.0 single_particle_sort 3300015966 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown bacterium SCGC_AG-657-D03 DOE Joint Genome Institute (JGI) 3300015966 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 438459 433 0 0 0 0 SRX3594353 Unrestricted 0.0 single_particle_sort 3300024710 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-J08 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024710 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 102757 135 0 0 0 0 0.0 single_particle_sort 3300041167 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.D18 DOE Joint Genome Institute (JGI) 3300041167 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 908669 892 1 0 1 0 SRX9653946 Unrestricted 0.0 single_particle_sort 3300035735 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.K9 DOE Joint Genome Institute (JGI) 3300035735 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1748111 1823 0 0 1 0 SRX8857421 Unrestricted 0.0 single_particle_sort 3300035461 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_J12 DOE Joint Genome Institute (JGI) 3300035461 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 47228 58 0 0 0 0 SRX9539550 Unrestricted 0.0 single_particle_sort 3300032654 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.M10 DOE Joint Genome Institute (JGI) 3300032654 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 432691 463 0 0 0 0 SRX6427735 Unrestricted 0.0 single_particle_sort 3300023636 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.E18 DOE Joint Genome Institute (JGI) 3300023636 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 97103 123 1 0 1 0 SRX4415707 Unrestricted 0.0 single_particle_sort 3300016216 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-574-B16 DOE Joint Genome Institute (JGI) 3300016216 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 367829 395 1 0 0 0 SRX3578795 Unrestricted 0.0 single_particle_sort 3300031850 *Microbiome Permanent Draft Subsurface sediment and ocean crust microbial communities from Atlantis Massif Sorted cell/s from oceanic crust in Atlantis Massif, mid-Atlantic ridge, Atlantic Ocean - 70C3R1 Marine Biological Laboratory 3300031850 Metagenome - Single Particle Sort SPAdes v. 3.9.0 released by JGI data releasing policy No Yes jackiegoordial@gmail.com Jackie Goordial No Environmental Aquatic Oceanic Marine Rock Oceanic Crust 30.12983 -42.122 25137498 35924 53 0 80 0 0.0 single_particle_sort 3300041135 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.J4 DOE Joint Genome Institute (JGI) 3300041135 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 677228 706 0 0 0 0 SRX9668681 Unrestricted 0.0 single_particle_sort 3300035767 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.D8 DOE Joint Genome Institute (JGI) 3300035767 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 1282587 1418 1 0 1 0 SRX8858019 Unrestricted 0.0 single_particle_sort 3300038136 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.M12 DOE Joint Genome Institute (JGI) 3300038136 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 1293751 1471 1 0 1 0 SRX9411765 Unrestricted 0.0 single_particle_sort 3300033325 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.H9 DOE Joint Genome Institute (JGI) 3300033325 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 578796 654 1 0 1 0 SRX7627517 Unrestricted 0.0 single_particle_sort 3300016519 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-F08 DOE Joint Genome Institute (JGI) 3300016519 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 458979 505 0 0 0 0 SRX3577183 Unrestricted 0.0 single_particle_sort 3300021758 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.N5 DOE Joint Genome Institute (JGI) 3300021758 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 638703 725 0 0 0 0 SRX4004730 Unrestricted 0.0 single_particle_sort 3300021691 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.C15 DOE Joint Genome Institute (JGI) 3300021691 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 261678 321 0 0 0 0 SRX4009966 Unrestricted 0.0 single_particle_sort 3300034618 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.M5 DOE Joint Genome Institute (JGI) 3300034618 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1327693 1440 0 0 1 0 SRX8394779 Unrestricted 0.0 single_particle_sort 3300023836 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.L18 DOE Joint Genome Institute (JGI) 3300023836 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 523326 614 1 0 1 0 SRX4525774 Unrestricted 0.0 single_particle_sort 3300018384 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Syntrophaceae_bacterium_SCGC_AG-650-P11 DOE Joint Genome Institute (JGI) 3300018384 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 2189138 2113 1 0 1 0 SRX3981932 Unrestricted 0.0 single_particle_sort 3300023337 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.G21 DOE Joint Genome Institute (JGI) 3300023337 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 793994 905 0 0 1 0 SRX4520192 Unrestricted 0.0 single_particle_sort 3300018369 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-I02 DOE Joint Genome Institute (JGI) 3300018369 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1914336 1799 0 0 0 0 SRX4815282 Unrestricted 0.0 single_particle_sort 3300041592 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.C17 DOE Joint Genome Institute (JGI) 3300041592 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 983881 1021 0 0 0 0 SRX10044851 Unrestricted 0.0 single_particle_sort 3300071204 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_A03_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071204 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 4007503 4137 3 0 2 0 Unrestricted 0.0 single_particle_sort 3300036638 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.G21 DOE Joint Genome Institute (JGI) 3300036638 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 871344 1013 0 0 0 0 SRX8904509 Unrestricted 0.0 single_particle_sort 3300035482 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_H18 DOE Joint Genome Institute (JGI) 3300035482 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 112787 145 0 0 0 0 SRX9540275 Unrestricted 0.0 single_particle_sort 3300035713 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_I12 DOE Joint Genome Institute (JGI) 3300035713 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 56689 81 0 0 0 0 SRX10045571 Unrestricted 0.0 single_particle_sort 3300023365 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.J10 DOE Joint Genome Institute (JGI) 3300023365 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 3214256 2970 1 0 1 0 SRX4519827 Unrestricted 0.0 single_particle_sort 3300022297 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Acetothermia_bacterium_SCGC_AH-151-F23 Bigelow Laboratory for Ocean Sciences 3300022297 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 1111269 1203 1 0 1 0 0.0 single_particle_sort 3300041390 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.E13 DOE Joint Genome Institute (JGI) 3300041390 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1994465 1881 0 0 2 0 SRX9646162 Unrestricted 0.0 single_particle_sort 3300015472 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-J20 DOE Joint Genome Institute (JGI) 3300015472 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 202298 221 0 0 0 0 SRX3560341 Unrestricted 0.0 single_particle_sort 3300019618 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-D23 DOE Joint Genome Institute (JGI) 3300019618 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 104093 93 0 0 0 0 SRX3959915 Unrestricted 0.0 single_particle_sort 3300019692 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Dependentiae bacterium SCGC_AG-274-P23 DOE Joint Genome Institute (JGI) 3300019692 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 812431 731 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300041113 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.L20 DOE Joint Genome Institute (JGI) 3300041113 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 84766 112 0 0 0 0 SRX9654446 Unrestricted 0.0 single_particle_sort 3300021657 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.M10 DOE Joint Genome Institute (JGI) 3300021657 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 138980 168 0 0 0 0 SRX4005521 Unrestricted 0.0 single_particle_sort 3300033425 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.N5 DOE Joint Genome Institute (JGI) 3300033425 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 736820 764 1 0 1 0 SRX7630292 Unrestricted 0.0 single_particle_sort 3300034717 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.2.E16 DOE Joint Genome Institute (JGI) 3300034717 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 2708816 2745 1 0 1 0 SRX8390538 Unrestricted 0.0 single_particle_sort 3300024088 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.C13 DOE Joint Genome Institute (JGI) 3300024088 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1041648 1137 1 0 2 0 SRX4519546 Unrestricted 0.0 single_particle_sort 3300024583 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-M23 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024583 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 12295 16 0 0 0 0 0.0 single_particle_sort 3300051129 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_J8_SVS DOE Joint Genome Institute (JGI) 3300051129 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 55328 81 0 0 0 0 Restricted 0.0 single_particle_sort 3300033195 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.E16 DOE Joint Genome Institute (JGI) 3300033195 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 359438 390 0 0 0 0 SRX7629320 Unrestricted 0.0 single_particle_sort 3300024723 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-A04 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024723 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 119997 145 0 0 0 0 0.0 single_particle_sort 3300021783 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.H20 DOE Joint Genome Institute (JGI) 3300021783 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 1325484 1437 0 0 0 0 SRX4009721 Unrestricted 0.0 single_particle_sort 3300026585 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-G23 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026585 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 29585 44 0 0 0 0 0.0 single_particle_sort 3300050999 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 173_N16_SVS DOE Joint Genome Institute (JGI) 3300050999 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 135955 206 0 0 0 0 Restricted 0.0 single_particle_sort 3300016205 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-574-O04 DOE Joint Genome Institute (JGI) 3300016205 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 249492 287 1 0 0 0 SRX3579052 Unrestricted 0.0 single_particle_sort 3300035868 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.H17 DOE Joint Genome Institute (JGI) 3300035868 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 698387 732 0 0 0 0 SRX8856780 Unrestricted 0.0 single_particle_sort 3300010728 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.04.M19 DOE Joint Genome Institute (JGI) 3300010728 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 86717 105 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300019853 *Microbiome Finished Human gut viral preps from from pediatric CD patients, Halifax, NS, Canada - MAREEN Human gut virus like particle preps from pediatric CD patients, Halifax, NS, Canada - MRN-005-36 Dalhousie University 3300019853 Metagenome - Single Particle Sort SPAdes v3.10.1 [metaSPAdes mode] released by JGI data releasing policy Yes Yes casey.jones@dal.ca Casey Jones No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 44.6488 -63.5752 183625 665 0 0 0 0 0.0 single_particle_sort 3300036602 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.D7 DOE Joint Genome Institute (JGI) 3300036602 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 1333296 1429 1 0 1 0 SRX8902160 Unrestricted 0.0 single_particle_sort 3300035758 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.L19 DOE Joint Genome Institute (JGI) 3300035758 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 366477 454 0 0 0 0 SRX8901064 Unrestricted 0.0 single_particle_sort 3300019976 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-G21 DOE Joint Genome Institute (JGI) 3300019976 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 474737 558 1 0 1 0 SRX4654721 Unrestricted 0.0 single_particle_sort 3300021767 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.J9 DOE Joint Genome Institute (JGI) 3300021767 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 713260 798 0 0 1 0 SRX4005441 Unrestricted 0.0 single_particle_sort 3300071240 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_edMDA_D08_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071240 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 691038 765 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300041627 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.G7 DOE Joint Genome Institute (JGI) 3300041627 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 4532513 3919 0 0 1 0 SRX14835583 Unrestricted 0.0 single_particle_sort 3300019653 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-K10 DOE Joint Genome Institute (JGI) 3300019653 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 132390 159 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300050774 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_P3_SVS DOE Joint Genome Institute (JGI) 3300050774 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 61867 105 0 0 0 0 Restricted 0.0 single_particle_sort 3300041158 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.K4 DOE Joint Genome Institute (JGI) 3300041158 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 746074 796 0 0 0 0 SRX9675088 Unrestricted 0.0 single_particle_sort 3300019943 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-G20 DOE Joint Genome Institute (JGI) 3300019943 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 58363 71 0 0 0 0 SRX4655235 Unrestricted 0.0 single_particle_sort 3300035891 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.N12 DOE Joint Genome Institute (JGI) 3300035891 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 571034 599 0 0 0 0 SRX8898056 Unrestricted 0.0 single_particle_sort 3300019527 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Leptolyngbya sp. HL7711_P1F1 JGI 000148CP-G19 DOE Joint Genome Institute (JGI) 3300019527 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 3476604 3515 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300034462 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.E15 DOE Joint Genome Institute (JGI) 3300034462 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 387433 432 1 0 1 0 SRX8389557 Unrestricted 0.0 single_particle_sort 3300021735 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.J21 DOE Joint Genome Institute (JGI) 3300021735 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 469623 560 0 0 1 0 SRX3990635 Unrestricted 0.0 single_particle_sort 3300014993 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.G17 DOE Joint Genome Institute (JGI) 3300014993 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 219013 248 1 0 1 0 Restricted 0.0 single_particle_sort 3300038095 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .M15 DOE Joint Genome Institute (JGI) 3300038095 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 386874 498 0 0 0 0 SRX9411567 Unrestricted 0.0 single_particle_sort 3300041096 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.D15 DOE Joint Genome Institute (JGI) 3300041096 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 146587 161 0 0 0 0 SRX9654513 Unrestricted 0.0 single_particle_sort 3300021720 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.I10 DOE Joint Genome Institute (JGI) 3300021720 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 396544 468 0 0 0 0 SRX4009949 Unrestricted 0.0 single_particle_sort 3300035796 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.K9 DOE Joint Genome Institute (JGI) 3300035796 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 421255 466 1 0 1 0 SRX8859684 Unrestricted 0.0 single_particle_sort 3300024780 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-J03 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024780 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 171712 209 0 0 0 0 0.0 single_particle_sort 3300015448 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-I09 DOE Joint Genome Institute (JGI) 3300015448 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 116416 156 0 0 1 0 SRX3560326 Unrestricted 0.0 single_particle_sort 3300016286 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Peregrinibacteria bacterium SCGC_AG-574-M20 DOE Joint Genome Institute (JGI) 3300016286 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 682277 728 1 0 1 0 SRX3579051 Unrestricted 0.0 single_particle_sort 3300019560 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-F04 DOE Joint Genome Institute (JGI) 3300019560 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 28341 45 0 0 0 0 SRX3560050 Unrestricted 0.0 single_particle_sort 3300041196 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.F12 DOE Joint Genome Institute (JGI) 3300041196 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2202331 2008 0 0 4 0 SRX9655186 Unrestricted 0.0 single_particle_sort 3300038195 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.F16 DOE Joint Genome Institute (JGI) 3300038195 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 719308 878 0 0 0 0 SRX9411814 Unrestricted 0.0 single_particle_sort 3300049962 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_K10_SVS DOE Joint Genome Institute (JGI) 3300049962 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 26747 26 0 0 0 0 Restricted 0.0 single_particle_sort 3300015997 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-B20 DOE Joint Genome Institute (JGI) 3300015997 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 378213 466 1 0 1 0 SRX3563198 Unrestricted 0.0 single_particle_sort 3300016589 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Sorted cell/s from deep shales in West Virginia, USA - MahaSR_06_J3 DOE Joint Genome Institute (JGI) 3300016589 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back deep subsurface 39.6017 -79.9761 1834596 1970 1 0 1 0 SRX3577099 Unrestricted 0.0 single_particle_sort 3300048749 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 159_B20_SVS DOE Joint Genome Institute (JGI) 3300048749 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 325897 456 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023895 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.M19 DOE Joint Genome Institute (JGI) 3300023895 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 823779 871 0 0 0 0 SRX4521640 Unrestricted 0.0 single_particle_sort 3300018314 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-N03 DOE Joint Genome Institute (JGI) 3300018314 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1198596 1222 0 0 0 0 SRX3981318 Unrestricted 0.0 single_particle_sort 3300022266 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Acetothermia_bacterium_SCGC_AH-151-J14 Bigelow Laboratory for Ocean Sciences 3300022266 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 500252 543 1 0 0 0 0.0 single_particle_sort 3300016564 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - Crenarchaeota_archaeum_SCGC_AG-640-N19 DOE Joint Genome Institute (JGI) 3300016564 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 1428492 1596 0 0 1 0 SRX3784274 Unrestricted 0.0 single_particle_sort 3300023149 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.J13 DOE Joint Genome Institute (JGI) 3300023149 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1370840 1394 1 0 1 0 SRX4509095 Unrestricted 0.0 single_particle_sort 3300041588 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.J5 DOE Joint Genome Institute (JGI) 3300041588 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2040662 1867 0 0 1 0 SRX14829556 Unrestricted 0.0 single_particle_sort 3300010827 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_42_SCGC_AG-159-O04 DOE Joint Genome Institute (JGI) 3300010827 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 538173 691 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035857 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.N9 DOE Joint Genome Institute (JGI) 3300035857 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 640804 825 1 0 1 0 SRX8897040 Unrestricted 0.0 single_particle_sort 3300015746 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-C10 DOE Joint Genome Institute (JGI) 3300015746 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 108684 160 0 0 0 0 SRX3550869 Unrestricted 0.0 single_particle_sort 3300035783 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.H21 DOE Joint Genome Institute (JGI) 3300035783 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 279375 326 1 0 1 0 SRX8858266 Unrestricted 0.0 single_particle_sort 3300034560 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.J17 DOE Joint Genome Institute (JGI) 3300034560 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 698364 781 0 0 0 0 SRX8393456 Unrestricted 0.0 single_particle_sort 3300021668 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.J4 DOE Joint Genome Institute (JGI) 3300021668 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 194193 231 0 0 0 0 SRX4004697 Unrestricted 0.0 single_particle_sort 3300016293 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-G06 DOE Joint Genome Institute (JGI) 3300016293 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 715783 747 1 0 1 0 SRX3580210 Unrestricted 0.0 single_particle_sort 3300018145 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-I11 DOE Joint Genome Institute (JGI) 3300018145 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 531562 516 0 0 0 0 SRX4815111 Unrestricted 0.0 single_particle_sort 3300019688 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-582-C08 DOE Joint Genome Institute (JGI) 3300019688 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 648074 719 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300015773 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-H14 DOE Joint Genome Institute (JGI) 3300015773 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 179877 225 0 0 0 0 SRX3560692 Unrestricted 0.0 single_particle_sort 3300041183 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.H13 DOE Joint Genome Institute (JGI) 3300041183 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2350067 2256 0 0 0 0 SRX9523944 Unrestricted 0.0 single_particle_sort 3300035947 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.F21 DOE Joint Genome Institute (JGI) 3300035947 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 822471 870 1 0 1 0 SRX8862641 Unrestricted 0.0 single_particle_sort 3300041326 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.G14 DOE Joint Genome Institute (JGI) 3300041326 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 294773 323 0 0 0 0 SRX9646876 Unrestricted 0.0 single_particle_sort 3300016159 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-K13 DOE Joint Genome Institute (JGI) 3300016159 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 589941 671 0 0 0 0 SRX3540662 Unrestricted 0.0 single_particle_sort 3300015534 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - Bacteroidetes bacterium JGI GBS_9_L17 DOE Joint Genome Institute (JGI) 3300015534 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Near-boiling (>90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 485971 502 1 0 1 0 SRX4062648 Unrestricted 0.0 single_particle_sort 3300014471 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.H21 DOE Joint Genome Institute (JGI) 3300014471 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1382064 1620 1 0 1 0 SRX3367106 Unrestricted 0.0 single_particle_sort 3300024092 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.I19 DOE Joint Genome Institute (JGI) 3300024092 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 942487 1006 1 0 1 0 SRX4500749 Unrestricted 0.0 single_particle_sort 3300015951 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-H20 DOE Joint Genome Institute (JGI) 3300015951 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 338065 415 0 0 0 0 SRX3540531 Unrestricted 0.0 single_particle_sort 3300015641 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Jinze hot spring sediment, Tengchong, China - JNZ.1.2014 1216 MDM2 JNZ p1 16S.N13.double-peak DOE Joint Genome Institute (JGI) 3300015641 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 25.4413 98.46 483861 595 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033374 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.D9 DOE Joint Genome Institute (JGI) 3300033374 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 791494 770 0 0 0 0 SRX7630530 Unrestricted 0.0 single_particle_sort 3300016059 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown archaeum SCGC_AG-657-M07 DOE Joint Genome Institute (JGI) 3300016059 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 450225 541 0 0 0 0 SRX3601753 Unrestricted 0.0 single_particle_sort 3300021713 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.N9 DOE Joint Genome Institute (JGI) 3300021713 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 400651 448 0 0 0 0 SRX4005483 Unrestricted 0.0 single_particle_sort 3300014986 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.G19 DOE Joint Genome Institute (JGI) 3300014986 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 118025 149 1 0 1 0 Restricted 0.0 single_particle_sort 3300024422 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Rhizobium bacterium JGI PFNR15_G4 DOE Joint Genome Institute (JGI) 3300024422 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 784908 933 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300034527 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P8_C2 DOE Joint Genome Institute (JGI) 3300034527 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 12011 13 0 0 0 0 SRX8136498 Unrestricted 0.0 single_particle_sort 3300019462 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.I17 DOE Joint Genome Institute (JGI) 3300019462 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 51169 60 1 0 1 0 Restricted 0.0 single_particle_sort 3300022054 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - TA06 bacterium JGI MDM2 NGM80-2-I04 DOE Joint Genome Institute (JGI) 3300022054 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 1217599 1252 1 0 2 0 Unrestricted 0.0 single_particle_sort 3300015841 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-J08 DOE Joint Genome Institute (JGI) 3300015841 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 318964 346 0 0 1 0 SRX3563841 Unrestricted 0.0 single_particle_sort 3300033663 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P2_G16 DOE Joint Genome Institute (JGI) 3300033663 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 3805 3 0 0 0 0 SRX7530072 Unrestricted 0.0 single_particle_sort 3300032341 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.H17 DOE Joint Genome Institute (JGI) 3300032341 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 672764 691 1 0 1 0 SRX6433314 Unrestricted 0.0 single_particle_sort 3300021744 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.K9 DOE Joint Genome Institute (JGI) 3300021744 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 544574 634 0 0 0 0 SRX4009625 Unrestricted 0.0 single_particle_sort 3300051109 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_K21_SVS DOE Joint Genome Institute (JGI) 3300051109 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 72186 95 0 0 0 0 Restricted 0.0 single_particle_sort 3300033863 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.I7 DOE Joint Genome Institute (JGI) 3300033863 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 404956 438 0 0 0 0 SRX7626226 Unrestricted 0.0 single_particle_sort 3300024703 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-E20 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024703 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 95808 129 0 0 0 0 0.0 single_particle_sort 3300024631 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-D15 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024631 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 48798 60 0 0 0 0 0.0 single_particle_sort 3300018443 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_K13 DOE Joint Genome Institute (JGI) 3300018443 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 446756 404 0 0 0 0 SRX4652194 Unrestricted 0.0 single_particle_sort 3300034749 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.3.L5 DOE Joint Genome Institute (JGI) 3300034749 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 703414 729 0 0 0 0 SRX8390298 Unrestricted 0.0 single_particle_sort 3300032648 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.K5 DOE Joint Genome Institute (JGI) 3300032648 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 418778 456 0 0 0 0 SRX6431128 Unrestricted 0.0 single_particle_sort 3300033316 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.M11 DOE Joint Genome Institute (JGI) 3300033316 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 336506 353 0 0 0 0 SRX7627680 Unrestricted 0.0 single_particle_sort 3300016225 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown archaeum SCGC_AG-578-K15 DOE Joint Genome Institute (JGI) 3300016225 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 355173 442 1 0 1 0 SRX3579263 Unrestricted 0.0 single_particle_sort 3300051009 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_D17_SVS DOE Joint Genome Institute (JGI) 3300051009 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 17538 25 0 0 0 0 Restricted 0.0 single_particle_sort 3300033718 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P2_C14 DOE Joint Genome Institute (JGI) 3300033718 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes jmartinez@bigelow.org; r.cavicchioli@unsw.edu.au Joaquin Martinez; Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 9205 9 0 0 0 0 SRX7525391 Unrestricted 0.0 single_particle_sort 3300038110 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .K15 DOE Joint Genome Institute (JGI) 3300038110 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 766489 946 0 0 0 0 SRX9411631 Unrestricted 0.0 single_particle_sort 3300033792 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P1_E4 DOE Joint Genome Institute (JGI) 3300033792 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 12823 15 0 0 0 0 SRX7525335 Unrestricted 0.0 single_particle_sort 3300016071 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG-582-E15 DOE Joint Genome Institute (JGI) 3300016071 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 500824 553 0 0 1 0 SRX3580211 Unrestricted 0.0 single_particle_sort 3300036597 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.D4 DOE Joint Genome Institute (JGI) 3300036597 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 860242 1056 1 0 0 0 SRX8901431 Unrestricted 0.0 single_particle_sort 3300016230 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Parcubacteria bacterium SCGC_AG-278-O10 DOE Joint Genome Institute (JGI) 3300016230 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 374826 462 1 0 1 0 SRX3578500 Unrestricted 0.0 single_particle_sort 3300023810 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.I6 DOE Joint Genome Institute (JGI) 3300023810 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 401626 479 1 0 1 0 SRX4523745 Unrestricted 0.0 single_particle_sort 3300015227 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - unknown bacterium SCGC_AG-290-I15 DOE Joint Genome Institute (JGI) 3300015227 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 480776 585 0 0 0 0 SRX3578557 Unrestricted 0.0 single_particle_sort 3300035989 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.I19 DOE Joint Genome Institute (JGI) 3300035989 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 854913 899 1 0 1 0 SRX8856233 Unrestricted 0.0 single_particle_sort 3300010732 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.04.H3 DOE Joint Genome Institute (JGI) 3300010732 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 83531 110 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300071224 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_WGAX_B11_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071224 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 839769 907 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300014459 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.J19 DOE Joint Genome Institute (JGI) 3300014459 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1422426 1495 1 0 2 0 SRX3366650 Unrestricted 0.0 single_particle_sort 3300024736 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-D19 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024736 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 126888 160 0 0 0 0 0.0 single_particle_sort 3300033352 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.J11 DOE Joint Genome Institute (JGI) 3300033352 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 631087 701 0 0 0 0 SRX7627677 Unrestricted 0.0 single_particle_sort 3300036081 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_J13 DOE Joint Genome Institute (JGI) 3300036081 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 116754 148 0 0 0 0 SRX10046321 Unrestricted 0.0 single_particle_sort 3300016171 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-J18 DOE Joint Genome Institute (JGI) 3300016171 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 603514 694 0 0 0 0 SRX3563721 Unrestricted 0.0 single_particle_sort 3300038010 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.E16 DOE Joint Genome Institute (JGI) 3300038010 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 1243168 1528 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023610 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.G12 DOE Joint Genome Institute (JGI) 3300023610 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 680241 844 1 0 1 0 SRX4415433 Unrestricted 0.0 single_particle_sort 3300015979 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown archaeum SCGC_AG-657-G17 DOE Joint Genome Institute (JGI) 3300015979 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 399403 445 0 0 0 0 SRX3601168 Unrestricted 0.0 single_particle_sort 3300023591 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.J8 DOE Joint Genome Institute (JGI) 3300023591 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 417588 385 0 0 0 0 SRX4547979 Unrestricted 0.0 single_particle_sort 3300050811 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_O3_SVS DOE Joint Genome Institute (JGI) 3300050811 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 68325 83 0 0 0 0 Restricted 0.0 single_particle_sort 3300018134 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Lentisphaerae_bacterium_SCGC_AG-650-C15 DOE Joint Genome Institute (JGI) 3300018134 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 591375 517 0 0 0 0 SRX3974909 Unrestricted 0.0 single_particle_sort 3300041241 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.C16 DOE Joint Genome Institute (JGI) 3300041241 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 4259706 4101 1 0 1 0 SRX9649226 Unrestricted 0.0 single_particle_sort 3300016547 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Lentisphaerae_bacterium_SCGC_AG-650-C19 DOE Joint Genome Institute (JGI) 3300016547 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 979336 942 0 0 1 0 SRX3785643 Unrestricted 0.0 single_particle_sort 3300018343 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-J02 DOE Joint Genome Institute (JGI) 3300018343 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1476319 1483 0 0 0 0 SRX3979358 Unrestricted 0.0 single_particle_sort 3300041385 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.F18 DOE Joint Genome Institute (JGI) 3300041385 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1588754 1500 0 0 1 0 SRX9645419 Unrestricted 0.0 single_particle_sort 3300035964 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.D19 DOE Joint Genome Institute (JGI) 3300035964 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1162207 1260 0 0 0 0 SRX8862697 Unrestricted 0.0 single_particle_sort 3300050752 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_B2_SVS DOE Joint Genome Institute (JGI) 3300050752 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 31900 40 0 0 0 0 Restricted 0.0 single_particle_sort 3300036062 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_F7 DOE Joint Genome Institute (JGI) 3300036062 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 235707 284 0 0 0 0 SRX10045920 Unrestricted 0.0 single_particle_sort 3300033305 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.G11 DOE Joint Genome Institute (JGI) 3300033305 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 439162 455 0 0 1 0 SRX7627676 Unrestricted 0.0 single_particle_sort 3300018376 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_N13 DOE Joint Genome Institute (JGI) 3300018376 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1847014 1786 1 0 1 0 SRX4650617 Unrestricted 0.0 single_particle_sort 3300037965 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.I7 DOE Joint Genome Institute (JGI) 3300037965 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 92750 111 0 0 0 0 SRX9411493 Unrestricted 0.0 single_particle_sort 3300026590 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-I02 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026590 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 81517 93 0 0 0 0 0.0 single_particle_sort 3300038023 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.J12 DOE Joint Genome Institute (JGI) 3300038023 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 263116 373 0 0 0 0 SRX9411118 Unrestricted 0.0 single_particle_sort 3300019914 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-N16 DOE Joint Genome Institute (JGI) 3300019914 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 492129 565 1 0 0 0 SRX4663481 Unrestricted 0.0 single_particle_sort 3300026611 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-M18 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026611 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 122825 161 0 0 0 0 0.0 single_particle_sort 3300023623 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.L16 DOE Joint Genome Institute (JGI) 3300023623 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 1249550 1434 1 0 1 0 SRX4548021 Unrestricted 0.0 single_particle_sort 3300041100 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.E22 DOE Joint Genome Institute (JGI) 3300041100 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 479293 550 1 0 1 0 SRX9654311 Unrestricted 0.0 single_particle_sort 3300033452 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.I7 DOE Joint Genome Institute (JGI) 3300033452 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 764423 837 0 0 1 0 SRX7630284 Unrestricted 0.0 single_particle_sort 3300037937 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.F19 DOE Joint Genome Institute (JGI) 3300037937 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 36487 46 0 0 0 0 SRX9410603 Unrestricted 0.0 single_particle_sort 3300038123 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.J10 DOE Joint Genome Institute (JGI) 3300038123 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 1175341 1350 1 0 1 0 SRX9411756 Unrestricted 0.0 single_particle_sort 3300023823 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.J11 DOE Joint Genome Institute (JGI) 3300023823 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 509028 541 1 0 1 0 SRX4519118 Unrestricted 0.0 single_particle_sort 3300015545 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-E09 DOE Joint Genome Institute (JGI) 3300015545 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 524736 597 0 0 1 0 SRX3549928 Unrestricted 0.0 single_particle_sort 3300033779 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P4_E10 DOE Joint Genome Institute (JGI) 3300033779 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 8772 14 0 0 0 0 SRX7525384 Unrestricted 0.0 single_particle_sort 3300041284 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.1.F20 DOE Joint Genome Institute (JGI) 3300041284 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2023567 1996 0 0 1 0 SRX9654844 Unrestricted 0.0 single_particle_sort 3300015009 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.D6 DOE Joint Genome Institute (JGI) 3300015009 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 284871 357 1 0 1 0 Restricted 0.0 single_particle_sort 3300016194 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown archaeum SCGC_AG-278-M22 DOE Joint Genome Institute (JGI) 3300016194 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 114058 169 0 0 0 0 SRX3578423 Unrestricted 0.0 single_particle_sort 3300021693 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.M15 DOE Joint Genome Institute (JGI) 3300021693 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 348182 410 0 0 0 0 SRX4009683 Unrestricted 0.0 single_particle_sort 3300023574 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.E18 DOE Joint Genome Institute (JGI) 3300023574 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 84734 105 0 0 0 0 SRX4547902 Unrestricted 0.0 single_particle_sort 3300038240 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.K16 DOE Joint Genome Institute (JGI) 3300038240 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 59099 63 0 0 4 0 Unrestricted 0.0 single_particle_sort 3300016424 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_K16 DOE Joint Genome Institute (JGI) 3300016424 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 1244872 1118 1 0 1 0 SRX4065477 Unrestricted 0.0 single_particle_sort 3300049935 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_D23_SVS DOE Joint Genome Institute (JGI) 3300049935 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 52213 90 0 0 0 0 Restricted 0.0 single_particle_sort 3300035805 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from geothermal spring sediment in Radiata Pool, Waikato, New Zealand - Uncultured microbe JGI_MDM2.NGM80.SYBR.02.B6 DOE Joint Genome Institute (JGI) 3300035805 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment -38.5341 176.1723 452662 591 1 0 1 0 SRX8861338 Unrestricted 0.0 single_particle_sort 3300033204 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.C20 DOE Joint Genome Institute (JGI) 3300033204 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 525692 597 1 0 1 0 SRX7630258 Unrestricted 0.0 single_particle_sort 3300015109 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-O23 DOE Joint Genome Institute (JGI) 3300015109 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 351356 398 0 0 1 0 SRX3578345 Unrestricted 0.0 single_particle_sort 3300016094 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-P21 DOE Joint Genome Institute (JGI) 3300016094 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 506153 573 0 0 0 0 SRX3580367 Unrestricted 0.0 single_particle_sort 3300032484 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.D16 DOE Joint Genome Institute (JGI) 3300032484 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 340303 382 1 0 1 0 SRX6427188 Unrestricted 0.0 single_particle_sort 3300022099 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.C20 DOE Joint Genome Institute (JGI) 3300022099 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 762831 922 0 0 1 0 SRX3998277 Unrestricted 0.0 single_particle_sort 3300015918 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-L09 DOE Joint Genome Institute (JGI) 3300015918 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 326562 372 0 0 0 0 SRX3563017 Unrestricted 0.0 single_particle_sort 3300035463 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_D13 DOE Joint Genome Institute (JGI) 3300035463 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 38237 39 0 0 0 0 SRX9539546 Unrestricted 0.0 single_particle_sort 3300049967 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_L7_SVS DOE Joint Genome Institute (JGI) 3300049967 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 19506 41 0 0 0 0 Restricted 0.0 single_particle_sort 3300015992 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Parcubacteria_bacterium_SCGC_AG-516-D15 DOE Joint Genome Institute (JGI) 3300015992 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Groundwater -28.24 26.8 8.55 390007 462 0 0 0 0 SRX3783251 Unrestricted 0.0 single_particle_sort 3300023308 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Deep Lake surface water, Antarctica - Uncultured microbe JGI DeepLkS.SYBR.02.L19 DOE Joint Genome Institute (JGI) 3300023308 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5558 78.1913 48192 60 0 0 0 0 SRX4547907 Unrestricted 0.0 single_particle_sort 3300034435 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.D7 DOE Joint Genome Institute (JGI) 3300034435 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 774242 839 0 0 0 0 SRX8389179 Unrestricted 0.0 single_particle_sort 3300021762 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.C16 DOE Joint Genome Institute (JGI) 3300021762 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1136169 1290 0 0 0 0 SRX3990304 Unrestricted 0.0 single_particle_sort 3300023801 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.E19 DOE Joint Genome Institute (JGI) 3300023801 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 368326 441 1 0 1 0 SRX4524820 Unrestricted 0.0 single_particle_sort 3300041622 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.N22 DOE Joint Genome Institute (JGI) 3300041622 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1335653 1388 0 0 0 0 SRX14835418 Unrestricted 0.0 single_particle_sort 3300024360 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.J20 DOE Joint Genome Institute (JGI) 3300024360 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 24221 25 0 0 0 0 SRX4547866 Unrestricted 0.0 single_particle_sort 3300036607 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.I8 DOE Joint Genome Institute (JGI) 3300036607 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 942119 1048 0 0 0 0 SRX8902472 Unrestricted 0.0 single_particle_sort 3300038101 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .K18 DOE Joint Genome Institute (JGI) 3300038101 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 728381 921 0 0 0 0 SRX9411595 Unrestricted 0.0 single_particle_sort 3300015238 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - Omnitrophica bacterium SCGC_AG-290-D08 DOE Joint Genome Institute (JGI) 3300015238 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 1460467 1441 1 0 1 0 SRX3578549 Unrestricted 0.0 single_particle_sort 3300019413 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16034 DOE Joint Genome Institute (JGI) 3300019413 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 1877146 2049 1 0 1 0 SRX3986863 Unrestricted 0.0 single_particle_sort 3300019522 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from Echinus Geyser water, Yellowstone National Park, Wyoming, United States - Geoarchaeota archaeon JGI 000156CP-C13 DOE Joint Genome Institute (JGI) 3300019522 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Acidic hot water 44.7225 -110.7014 1417620 1668 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300022253 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Acetothermia_bacterium_SCGC_AH-147-K11 Bigelow Laboratory for Ocean Sciences 3300022253 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 587760 657 1 0 0 0 0.0 single_particle_sort 3300034467 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.C15 DOE Joint Genome Institute (JGI) 3300034467 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 349600 395 1 0 1 0 SRX8389564 Unrestricted 0.0 single_particle_sort 3300071195 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_edMDA_C05_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071195 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 1047962 1130 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023601 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.J12 DOE Joint Genome Institute (JGI) 3300023601 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 619594 679 0 0 0 0 SRX4548005 Unrestricted 0.0 single_particle_sort 3300023733 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.N9 DOE Joint Genome Institute (JGI) 3300023733 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 58353 62 1 0 1 0 SRX4548073 Unrestricted 0.0 single_particle_sort 3300038001 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .C15 DOE Joint Genome Institute (JGI) 3300038001 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 29693 34 0 0 0 0 SRX9411521 Unrestricted 0.0 single_particle_sort 3300024097 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.L11 DOE Joint Genome Institute (JGI) 3300024097 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1291973 1487 1 0 1 0 SRX4519610 Unrestricted 0.0 single_particle_sort 3300035816 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0813.Sybr.01.D7 DOE Joint Genome Institute (JGI) 3300035816 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 963082 1050 1 0 1 0 SRX8893895 Unrestricted 0.0 single_particle_sort 3300019435 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16023 DOE Joint Genome Institute (JGI) 3300019435 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 2627860 2871 1 0 1 0 SRX3985680 Unrestricted 0.0 single_particle_sort 3300032384 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.L10 DOE Joint Genome Institute (JGI) 3300032384 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 553517 600 0 0 0 0 SRX6433685 Unrestricted 0.0 single_particle_sort 3300021781 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.F19 DOE Joint Genome Institute (JGI) 3300021781 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1103334 1286 0 0 0 0 SRX3989967 Unrestricted 0.0 single_particle_sort 3300050800 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_K4_SVS DOE Joint Genome Institute (JGI) 3300050800 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 64106 100 0 0 0 0 Restricted 0.0 single_particle_sort 3300024721 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-G09 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024721 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 118586 146 0 0 0 0 0.0 single_particle_sort 3300016324 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Parcubacteria bacterium SCGC_AG-278-G07 DOE Joint Genome Institute (JGI) 3300016324 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 684198 777 0 0 0 0 SRX3578375 Unrestricted 0.0 single_particle_sort 3300019467 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-2.D5 DOE Joint Genome Institute (JGI) 3300019467 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 92275 142 0 0 0 0 Restricted 0.0 single_particle_sort 3300024197 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Burkholderia bacterium JGI PFNR15_M16 DOE Joint Genome Institute (JGI) 3300024197 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 808710 954 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300024427 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.N16 DOE Joint Genome Institute (JGI) 3300024427 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 2476172 2321 1 0 1 0 SRX4547836 Unrestricted 0.0 single_particle_sort 3300010822 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_25_SCGC_AG-138-J18 DOE Joint Genome Institute (JGI) 3300010822 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 470204 630 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035852 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.H8 DOE Joint Genome Institute (JGI) 3300035852 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 393916 449 0 0 0 0 SRX8896950 Unrestricted 0.0 single_particle_sort 3300041111 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.G15 DOE Joint Genome Institute (JGI) 3300041111 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 567315 635 1 0 0 0 SRX9654424 Unrestricted 0.0 single_particle_sort 3300018290 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_J13 DOE Joint Genome Institute (JGI) 3300018290 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 910266 1024 0 0 0 0 SRX4652737 Unrestricted 0.0 single_particle_sort 3300019666 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-P14 DOE Joint Genome Institute (JGI) 3300019666 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 279129 267 0 0 0 0 SRX3959909 Unrestricted 0.0 single_particle_sort 3300021686 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.D21 DOE Joint Genome Institute (JGI) 3300021686 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 264461 331 0 0 0 0 SRX4009722 Unrestricted 0.0 single_particle_sort 3300024626 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-M04 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024626 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 50222 60 0 0 0 0 0.0 single_particle_sort 3300022955 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.H8 DOE Joint Genome Institute (JGI) 3300022955 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 87178 124 0 0 0 0 SRX4454607 Unrestricted 0.0 single_particle_sort 3300035711 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_F12 DOE Joint Genome Institute (JGI) 3300035711 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 550710 689 0 0 0 0 SRX10045569 Unrestricted 0.0 single_particle_sort 3300037928 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.J16 DOE Joint Genome Institute (JGI) 3300037928 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 36861 42 0 0 0 0 SRX9410593 Unrestricted 0.0 single_particle_sort 3300035942 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.L7 DOE Joint Genome Institute (JGI) 3300035942 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1343256 1408 1 0 1 0 SRX8862632 Unrestricted 0.0 single_particle_sort 3300022288 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - unknown_bacterium_SCGC_AH-151-L06 Bigelow Laboratory for Ocean Sciences 3300022288 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 1592729 1666 0 0 1 0 0.0 single_particle_sort 3300041269 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.2.J6 DOE Joint Genome Institute (JGI) 3300041269 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 457218 513 0 0 0 0 SRX9667825 Unrestricted 0.0 single_particle_sort 3300036044 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.G11 DOE Joint Genome Institute (JGI) 3300036044 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 616768 584 0 0 0 0 SRX8136711 Unrestricted 0.0 single_particle_sort 3300023408 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.F10 DOE Joint Genome Institute (JGI) 3300023408 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 785564 825 1 0 0 0 SRX4520189 Unrestricted 0.0 single_particle_sort 3300024826 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-F08 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024826 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 265234 346 0 0 0 0 0.0 single_particle_sort 3300019420 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16037 DOE Joint Genome Institute (JGI) 3300019420 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 2333848 2444 1 0 1 0 SRX3987083 Unrestricted 0.0 single_particle_sort 3300015222 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - unknown bacterium SCGC_AG-290-I20 DOE Joint Genome Institute (JGI) 3300015222 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 471844 519 0 0 0 0 SRX3578737 Unrestricted 0.0 single_particle_sort 3300023450 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.D19 DOE Joint Genome Institute (JGI) 3300023450 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 512313 703 0 0 0 0 SRX4548522 Unrestricted 0.0 single_particle_sort 3300010737 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_36_SCGC_AG-159-M18 DOE Joint Genome Institute (JGI) 3300010737 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 92886 127 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300036013 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.L18 DOE Joint Genome Institute (JGI) 3300036013 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1031254 1127 0 0 0 0 SRX8857817 Unrestricted 0.0 single_particle_sort 3300014394 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.F21 DOE Joint Genome Institute (JGI) 3300014394 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 338585 425 0 0 1 0 SRX3366901 Unrestricted 0.0 single_particle_sort 3300041638 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.L20 DOE Joint Genome Institute (JGI) 3300041638 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 3120118 3177 0 0 0 0 SRX14835846 Unrestricted 0.0 single_particle_sort 3300036750 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.N19.redo DOE Joint Genome Institute (JGI) 3300036750 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 391230 480 0 0 0 0 SRX8910313 Unrestricted 0.0 single_particle_sort 3300050896 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_I17_SVS DOE Joint Genome Institute (JGI) 3300050896 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 19177 41 0 0 0 0 Restricted 0.0 single_particle_sort 3300022077 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Gongxiaoshe Spring, Yunnan, China - Calescamantes bacterium JGI MDM2 GXS-2-I6 DOE Joint Genome Institute (JGI) 3300022077 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 25.4401 98.4408 248380 299 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300010765 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.04.N11 DOE Joint Genome Institute (JGI) 3300010765 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 197349 247 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300049944 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_G19_SVS DOE Joint Genome Institute (JGI) 3300049944 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 37586 52 0 0 0 0 Restricted 0.0 single_particle_sort 3300033357 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.C13 DOE Joint Genome Institute (JGI) 3300033357 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 383473 427 0 0 0 0 SRX7628763 Unrestricted 0.0 single_particle_sort 3300018233 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_L17 DOE Joint Genome Institute (JGI) 3300018233 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 655225 678 0 0 0 0 SRX4652225 Unrestricted 0.0 single_particle_sort 3300041331 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.M22 DOE Joint Genome Institute (JGI) 3300041331 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1409139 1459 1 0 1 0 SRX9646392 Unrestricted 0.0 single_particle_sort 3300019538 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-M20 DOE Joint Genome Institute (JGI) 3300019538 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 26130 32 0 0 0 0 SRX3549156 Unrestricted 0.0 single_particle_sort 3300050948 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-956-K11 DOE Joint Genome Institute (JGI) 3300050948 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1197303 -42.124435 200723 268 0 0 0 0 Restricted 0.0 single_particle_sort 3300050791 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_H19_SVS DOE Joint Genome Institute (JGI) 3300050791 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 14819 28 0 0 0 0 Restricted 0.0 single_particle_sort 3300035874 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.I9 DOE Joint Genome Institute (JGI) 3300035874 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 728285 785 1 0 1 0 SRX8857275 Unrestricted 0.0 single_particle_sort 3300016440 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-P13 DOE Joint Genome Institute (JGI) 3300016440 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 1389076 1267 0 0 0 0 SRX3578236 Unrestricted 0.0 single_particle_sort 3300038224 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.I18 DOE Joint Genome Institute (JGI) 3300038224 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 587966 767 0 0 0 0 SRX9411058 Unrestricted 0.0 single_particle_sort 3300050858 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_P15_SVS DOE Joint Genome Institute (JGI) 3300050858 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 60357 80 0 0 0 0 Restricted 0.0 single_particle_sort 3300015884 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-578-L06 DOE Joint Genome Institute (JGI) 3300015884 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 211943 289 1 0 0 0 SRX3579276 Unrestricted 0.0 single_particle_sort 3300018206 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Armatimonadetes_bacterium_SCGC_AG-650-L22 DOE Joint Genome Institute (JGI) 3300018206 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 526270 568 1 0 1 0 SRX3978138 Unrestricted 0.0 single_particle_sort 3300024685 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-B10 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024685 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 98022 110 0 0 0 0 0.0 single_particle_sort 3300021625 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.J14 DOE Joint Genome Institute (JGI) 3300021625 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 47068 62 0 0 0 0 SRX4009965 Unrestricted 0.0 single_particle_sort 3300033898 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.J14 DOE Joint Genome Institute (JGI) 3300033898 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 322730 365 0 0 0 0 SRX7626394 Unrestricted 0.0 single_particle_sort 3300033457 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.N4 DOE Joint Genome Institute (JGI) 3300033457 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 1199796 1344 0 0 1 0 SRX7630289 Unrestricted 0.0 single_particle_sort 3300023790 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.E20 DOE Joint Genome Institute (JGI) 3300023790 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 293054 377 1 0 2 0 SRX4506012 Unrestricted 0.0 single_particle_sort 3300024079 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.I9 DOE Joint Genome Institute (JGI) 3300024079 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 682444 752 1 0 1 0 SRX4523760 Unrestricted 0.0 single_particle_sort 3300010838 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_12_SCGC_AG-159-D14 DOE Joint Genome Institute (JGI) 3300010838 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 800982 810 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015869 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-E11 DOE Joint Genome Institute (JGI) 3300015869 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 193669 239 0 0 0 0 SRX3546990 Unrestricted 0.0 single_particle_sort 3300033612 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P1_J16 DOE Joint Genome Institute (JGI) 3300033612 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 10274 14 0 0 0 0 SRX7525378 Unrestricted 0.0 single_particle_sort 3300021825 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.K18 DOE Joint Genome Institute (JGI) 3300021825 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 931763 1147 1 0 0 0 SRX3989528 Unrestricted 0.0 single_particle_sort 3300024885 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.05.J22 DOE Joint Genome Institute (JGI) 3300024885 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 549711 705 0 0 0 0 SRX4391184 Unrestricted 0.0 single_particle_sort 3300023939 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.H17 DOE Joint Genome Institute (JGI) 3300023939 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 1165900 1200 1 0 1 0 SRX4500707 Unrestricted 0.0 single_particle_sort 3300036020 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.D21 DOE Joint Genome Institute (JGI) 3300036020 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 683134 718 0 0 0 0 SRX8857934 Unrestricted 0.0 single_particle_sort 3300037932 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.F16 DOE Joint Genome Institute (JGI) 3300037932 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 302234 370 0 0 0 0 SRX9410428 Unrestricted 0.0 single_particle_sort 3300023350 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.G13 DOE Joint Genome Institute (JGI) 3300023350 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 997236 1132 1 0 1 0 SRX4547506 Unrestricted 0.0 single_particle_sort 3300019444 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent sediment, Guaymas Basin, Mexico - 6Q_4868_13_11 DOE Joint Genome Institute (JGI) 3300019444 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.001 -110.5999 12272783 11811 2 0 4 0 SRX3974096 Unrestricted 0.0 single_particle_sort 3300015669 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - DC4.4.2015 0309 DC4 P4 16S.L19.double-peak DOE Joint Genome Institute (JGI) 3300015669 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 977182 1198 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300036035 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_H21 DOE Joint Genome Institute (JGI) 3300036035 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 22823 36 0 0 0 0 SRX10076517 Unrestricted 0.0 single_particle_sort 3300016542 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from underground thermal water from 5P borehole, Tomsk, Russia - Microgenometes_bacterium_SCGC_AG-716-E04 DOE Joint Genome Institute (JGI) 3300016542 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole Groundwater 58.0758 82.8374 7.49-7.6 768667 866 1 0 0 0 SRX3782167 Unrestricted 0.0 single_particle_sort 3300033973 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.H17 DOE Joint Genome Institute (JGI) 3300033973 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 426148 451 1 0 1 0 SRX7630394 Unrestricted 0.0 single_particle_sort 3300033856 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.K6 DOE Joint Genome Institute (JGI) 3300033856 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 49599 53 0 0 0 0 SRX7626210 Unrestricted 0.0 single_particle_sort 3300021830 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.G6 DOE Joint Genome Institute (JGI) 3300021830 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 4887896 4880 1 0 1 0 SRX3989527 Unrestricted 0.0 single_particle_sort 3300023516 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.D10 DOE Joint Genome Institute (JGI) 3300023516 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 94142 168 0 0 0 0 SRX4498833 Unrestricted 0.0 single_particle_sort 3300016340 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-I07 DOE Joint Genome Institute (JGI) 3300016340 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 681068 823 0 0 1 0 SRX3560707 Unrestricted 0.0 single_particle_sort 3300036067 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_E8 DOE Joint Genome Institute (JGI) 3300036067 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 245325 325 0 0 0 0 SRX10045994 Unrestricted 0.0 single_particle_sort 3300022634 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States - Sphingomonadales bacterium JGI AMGPRD042217_3 DOE Joint Genome Institute (JGI) 3300022634 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 1715746 2065 1 0 1 0 SRX4410863 Unrestricted 0.0 single_particle_sort 3300033946 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.G13 DOE Joint Genome Institute (JGI) 3300033946 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 380930 469 0 0 0 0 SRX7626290 Unrestricted 0.0 single_particle_sort 3300018215 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-C10 DOE Joint Genome Institute (JGI) 3300018215 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 644874 652 0 0 0 0 SRX3974490 Unrestricted 0.0 single_particle_sort 3300033656 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P4_G20 DOE Joint Genome Institute (JGI) 3300033656 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 4139 8 0 0 0 0 SRX7529897 Unrestricted 0.0 single_particle_sort 3300021630 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.K10 DOE Joint Genome Institute (JGI) 3300021630 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 60237 76 0 0 0 0 SRX4005486 Unrestricted 0.0 single_particle_sort 3300023161 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.M9 DOE Joint Genome Institute (JGI) 3300023161 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1886969 1824 1 0 1 0 SRX4509093 Unrestricted 0.0 single_particle_sort 3300050883 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_E3_SVS DOE Joint Genome Institute (JGI) 3300050883 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 39243 43 0 0 0 0 Restricted 0.0 single_particle_sort 3300034538 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P9_G14 DOE Joint Genome Institute (JGI) 3300034538 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 3223 4 0 0 0 0 SRX8136714 Unrestricted 0.0 single_particle_sort 3300050757 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_L16_SVS DOE Joint Genome Institute (JGI) 3300050757 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 61143 93 0 0 0 0 Restricted 0.0 single_particle_sort 3300021810 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.J13 DOE Joint Genome Institute (JGI) 3300021810 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1011935 926 0 0 0 0 SRX3989444 Unrestricted 0.0 single_particle_sort 3300024658 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-O09 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024658 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 78191 92 0 0 0 0 0.0 single_particle_sort 3300024791 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-I05 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024791 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 186668 237 0 0 0 0 0.0 single_particle_sort 3300036015 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.H20 DOE Joint Genome Institute (JGI) 3300036015 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 576130 628 1 0 1 0 SRX8857818 Unrestricted 0.0 single_particle_sort 3300018267 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-D18 DOE Joint Genome Institute (JGI) 3300018267 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 920789 892 0 0 0 0 SRX3978446 Unrestricted 0.0 single_particle_sort 3300037956 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.H21 DOE Joint Genome Institute (JGI) 3300037956 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 805946 1122 0 0 1 0 SRX9410995 Unrestricted 0.0 single_particle_sort 3300016394 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Aminicenantes_bacterium_SCGC_AG-636-C03 DOE Joint Genome Institute (JGI) 3300016394 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 932272 952 0 0 0 0 SRX3784472 Unrestricted 0.0 single_particle_sort 3300010763 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.M18 DOE Joint Genome Institute (JGI) 3300010763 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 196812 246 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300034750 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.1.K14 DOE Joint Genome Institute (JGI) 3300034750 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 2046803 2154 1 0 0 0 SRX8390300 Unrestricted 0.0 single_particle_sort 3300034592 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.E8 DOE Joint Genome Institute (JGI) 3300034592 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1757380 1814 0 0 1 0 SRX8394681 Unrestricted 0.0 single_particle_sort 3300024127 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Burkholderia bacterium JGI PFNR15_J4 DOE Joint Genome Institute (JGI) 3300024127 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 163191 212 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300021187 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_C19 DOE Joint Genome Institute (JGI) 3300021187 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 488704 538 0 0 2 0 SRX5078145 Unrestricted 0.0 single_particle_sort 3300021610 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.G15 DOE Joint Genome Institute (JGI) 3300021610 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 24830 28 0 0 0 0 SRX4006638 Unrestricted 0.0 single_particle_sort 3300016619 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - NC10_bacterium_SCGC_AG-636-G14 DOE Joint Genome Institute (JGI) 3300016619 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 2538894 2651 1 0 1 0 SRX3784414 Unrestricted 0.0 single_particle_sort 3300022614 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Caulobacterales bacterium JGI PCGPRD042217_13 DOE Joint Genome Institute (JGI) 3300022614 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 481674 577 0 0 2 0 SRX4414718 Unrestricted 0.0 single_particle_sort 3300018235 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_I7 DOE Joint Genome Institute (JGI) 3300018235 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 761156 788 0 0 0 0 SRX4647820 Unrestricted 0.0 single_particle_sort 3300023008 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - Cryomorphaceae bacterium JGI GBS_4_N16 DOE Joint Genome Institute (JGI) 3300023008 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 4357439 3852 1 0 2 0 Unrestricted 0.0 single_particle_sort 3300010818 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_32_SCGC_AG-138-L19 DOE Joint Genome Institute (JGI) 3300010818 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 500677 602 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300018220 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Syntrophaceae_bacterium_SCGC_AG-650-I19 DOE Joint Genome Institute (JGI) 3300018220 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 638329 622 1 0 1 0 SRX3981801 Unrestricted 0.0 single_particle_sort 3300023744 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.M5 DOE Joint Genome Institute (JGI) 3300023744 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 106372 124 0 0 0 0 SRX4548062 Unrestricted 0.0 single_particle_sort 3300033832 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.C20 DOE Joint Genome Institute (JGI) 3300033832 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 1840947 1667 0 0 0 0 SRX7630462 Unrestricted 0.0 single_particle_sort 3300024696 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-A08 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024696 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 107131 119 0 0 0 0 0.0 single_particle_sort 3300033246 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.L19 DOE Joint Genome Institute (JGI) 3300033246 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 341037 392 0 0 0 0 SRX7630658 Unrestricted 0.0 single_particle_sort 3300015870 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-C10 DOE Joint Genome Institute (JGI) 3300015870 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 175138 239 0 0 0 0 SRX3580159 Unrestricted 0.0 single_particle_sort 3300037912 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.D12 DOE Joint Genome Institute (JGI) 3300037912 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 1029001 1030 1 0 0 0 SRX9410327 Unrestricted 0.0 single_particle_sort 3300014440 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.N15 DOE Joint Genome Institute (JGI) 3300014440 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1005652 1086 0 0 1 0 SRX3368417 Unrestricted 0.0 single_particle_sort 3300037998 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .H6 DOE Joint Genome Institute (JGI) 3300037998 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 782130 963 1 0 1 0 SRX9411508 Unrestricted 0.0 single_particle_sort 3300023919 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.E15 DOE Joint Genome Institute (JGI) 3300023919 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 892929 1041 0 0 1 0 SRX4525529 Unrestricted 0.0 single_particle_sort 3300019490 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Rhodospirillaceae bacterium HL7711_P1E10 JGI 000149CP-D06 DOE Joint Genome Institute (JGI) 3300019490 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 31886 37 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035880 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.H15 DOE Joint Genome Institute (JGI) 3300035880 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1365197 1414 0 0 0 0 SRX8857330 Unrestricted 0.0 single_particle_sort 3300015670 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from a deep sea mud volcano in Anaximander Mountains, Eastern Mediterranean Sea - B25.2.2014 1114 MDM2 B25 p2 16S.J14.double-seq DOE Joint Genome Institute (JGI) 3300015670 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Mud volcano Marine Unclassified Deep sea volcano 35.3338 30.2722 1288916 1252 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300024397 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Pseudomonas bacterium JGI PFNR15_E15 DOE Joint Genome Institute (JGI) 3300024397 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 484259 523 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300021623 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.J4 DOE Joint Genome Institute (JGI) 3300021623 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 31894 49 0 0 0 0 SRX4009922 Unrestricted 0.0 single_particle_sort 3300024683 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-K15 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024683 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 85305 112 0 0 0 0 0.0 single_particle_sort 3300036006 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.I22 DOE Joint Genome Institute (JGI) 3300036006 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 407012 450 1 0 1 0 SRX8857657 Unrestricted 0.0 single_particle_sort 3300016124 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-274-I05 DOE Joint Genome Institute (JGI) 3300016124 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 582427 624 0 0 1 0 SRX3578262 Unrestricted 0.0 single_particle_sort 3300022129 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.N5 DOE Joint Genome Institute (JGI) 3300022129 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 2762967 2684 1 0 1 0 SRX3998268 Unrestricted 0.0 single_particle_sort 3300016494 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-D03 DOE Joint Genome Institute (JGI) 3300016494 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 169162 193 0 0 2 0 SRX3784703 Unrestricted 0.0 single_particle_sort 3300016024 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown bacterium SCGC_AG-278-E22 DOE Joint Genome Institute (JGI) 3300016024 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 317490 400 0 0 0 0 SRX3578363 Unrestricted 0.0 single_particle_sort 3300021823 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.D15 DOE Joint Genome Institute (JGI) 3300021823 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 2271364 2291 1 0 1 0 SRX3989576 Unrestricted 0.0 single_particle_sort 3300024883 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.05.I13 DOE Joint Genome Institute (JGI) 3300024883 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 292646 311 0 0 0 0 SRX4390999 Unrestricted 0.0 single_particle_sort 3300015409 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - unknown archaeum SCGC_AG-128-D09 DOE Joint Genome Institute (JGI) 3300015409 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 764019 977 0 0 1 0 SRX3574285 Unrestricted 0.0 single_particle_sort 3300022029 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - TA06 bacterium JGI MDM2 NGM80-2-D14 DOE Joint Genome Institute (JGI) 3300022029 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 855464 987 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300015922 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-F07 DOE Joint Genome Institute (JGI) 3300015922 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 296542 378 0 0 0 0 SRX3540193 Unrestricted 0.0 single_particle_sort 3300019390 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16009 DOE Joint Genome Institute (JGI) 3300019390 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 928439 955 1 0 1 0 SRX3985610 Unrestricted 0.0 single_particle_sort 3300036033 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_E21 DOE Joint Genome Institute (JGI) 3300036033 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 44676 59 0 0 0 0 SRX10076515 Unrestricted 0.0 single_particle_sort 3300041618 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.L6 DOE Joint Genome Institute (JGI) 3300041618 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 3845986 3832 1 0 1 0 SRX14834533 Unrestricted 0.0 single_particle_sort 3300033975 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.K17 DOE Joint Genome Institute (JGI) 3300033975 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 459223 513 1 0 1 0 SRX7630390 Unrestricted 0.0 single_particle_sort 3300010717 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.M22 DOE Joint Genome Institute (JGI) 3300010717 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 41151 50 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300014340 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.C07 DOE Joint Genome Institute (JGI) 3300014340 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1291743 1554 1 0 1 0 SRX3366833 Unrestricted 0.0 single_particle_sort 3300019592 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-F05 DOE Joint Genome Institute (JGI) 3300019592 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 50567 71 0 0 0 0 SRX3560309 Unrestricted 0.0 single_particle_sort 3300041311 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.J14 DOE Joint Genome Institute (JGI) 3300041311 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 996822 954 0 0 0 0 SRX9646401 Unrestricted 0.0 single_particle_sort 3300019518 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from Echinus Geyser water, Yellowstone National Park, Wyoming, United States - Nanoarchaeum sp. JGI 000156CP-E21 DOE Joint Genome Institute (JGI) 3300019518 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Acidic hot water 44.7225 -110.7014 1248233 1512 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300050179 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_H3_SVS DOE Joint Genome Institute (JGI) 3300050179 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 43172 61 0 0 0 0 Restricted 0.0 single_particle_sort 3300018213 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_D16 DOE Joint Genome Institute (JGI) 3300018213 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 539166 587 0 0 0 0 SRX4652586 Unrestricted 0.0 single_particle_sort 3300050885 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_F10_SVS DOE Joint Genome Institute (JGI) 3300050885 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 84857 117 0 0 0 0 Restricted 0.0 single_particle_sort 3300021695 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.J11 DOE Joint Genome Institute (JGI) 3300021695 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 280529 340 0 0 0 0 SRX4009650 Unrestricted 0.0 single_particle_sort 3300018244 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_K8 DOE Joint Genome Institute (JGI) 3300018244 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 717278 717 0 0 0 0 SRX4651171 Unrestricted 0.0 single_particle_sort 3300033321 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.G8 DOE Joint Genome Institute (JGI) 3300033321 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 557676 630 0 0 0 0 SRX7630527 Unrestricted 0.0 single_particle_sort 3300023382 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.H11 DOE Joint Genome Institute (JGI) 3300023382 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 1572328 1719 1 0 2 0 SRX4548773 Unrestricted 0.0 single_particle_sort 3300041131 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.C16 DOE Joint Genome Institute (JGI) 3300041131 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2866181 2524 1 0 1 0 SRX9668830 Unrestricted 0.0 single_particle_sort 3300035803 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from geothermal spring sediment in Radiata Pool, Waikato, New Zealand - Uncultured microbe JGI_MDM2.NGM80.SYBR.02.K8 DOE Joint Genome Institute (JGI) 3300035803 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment -38.5341 176.1723 417321 509 0 0 0 0 SRX8861262 Unrestricted 0.0 single_particle_sort 3300071259 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_Wchmk_F10_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071259 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 573502 709 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300023580 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.G5 DOE Joint Genome Institute (JGI) 3300023580 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 116641 152 0 0 0 0 SRX4415711 Unrestricted 0.0 single_particle_sort 3300014424 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.K15 DOE Joint Genome Institute (JGI) 3300014424 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 701303 880 1 0 0 0 SRX3368328 Unrestricted 0.0 single_particle_sort 3300024479 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.L16 DOE Joint Genome Institute (JGI) 3300024479 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 24182 33 0 0 0 0 SRX4547877 Unrestricted 0.0 single_particle_sort 3300035731 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_G9 DOE Joint Genome Institute (JGI) 3300035731 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 46587 58 0 0 0 0 SRX10045297 Unrestricted 0.0 single_particle_sort 3300035465 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_M13 DOE Joint Genome Institute (JGI) 3300035465 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 72951 88 0 0 0 0 SRX9539771 Unrestricted 0.0 single_particle_sort 3300041270 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.J16 DOE Joint Genome Institute (JGI) 3300041270 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 3394474 3130 0 0 0 0 SRX9668474 Unrestricted 0.0 single_particle_sort 3300036090 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_M17 DOE Joint Genome Institute (JGI) 3300036090 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 251793 310 0 0 0 0 SRX10046435 Unrestricted 0.0 single_particle_sort 3300023767 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.05.J11 DOE Joint Genome Institute (JGI) 3300023767 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 181979 259 0 0 0 0 SRX4390961 Unrestricted 0.0 single_particle_sort 3300022988 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - GAL15 bacterium JGI MDM2 DC4-3-J14 DOE Joint Genome Institute (JGI) 3300022988 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 903438 1035 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300035836 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0815.Sybr.01.J22 DOE Joint Genome Institute (JGI) 3300035836 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 934253 1071 1 0 0 0 SRX8894638 Unrestricted 0.0 single_particle_sort 3300019415 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16048 DOE Joint Genome Institute (JGI) 3300019415 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 2017264 2236 1 0 1 0 SRX3987231 Unrestricted 0.0 single_particle_sort 3300022255 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - unknown_bacterium_SCGC_AH-147-L23 Bigelow Laboratory for Ocean Sciences 3300022255 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 16301 17 0 0 0 0 0.0 single_particle_sort 3300071193 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_edMDA_F04_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071193 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 594762 699 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300023735 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.D21 DOE Joint Genome Institute (JGI) 3300023735 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 48982 77 0 0 0 0 SRX4390941 Unrestricted 0.0 single_particle_sort 3300034607 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.E17 DOE Joint Genome Institute (JGI) 3300034607 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 616652 639 1 0 1 0 SRX8394726 Unrestricted 0.0 single_particle_sort 3300023461 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.L20 DOE Joint Genome Institute (JGI) 3300023461 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 675639 738 0 0 0 0 SRX4548457 Unrestricted 0.0 single_particle_sort 3300071310 *Microbiome Permanent Draft Comparing whole genome amplification chemistries for bacterial single cell genomics Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - scBac_Watchmaker_EnviBac_sc_well5E_S84 Stanford University 3300071310 Metagenome - Single Particle Sort Spades v. 3.15.3 released per request -- IMGSUPP-4358 No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 446225 526 0 0 0 0 0.0 single_particle_sort 3300048750 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 159_J11_SVS DOE Joint Genome Institute (JGI) 3300048750 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 40132 60 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300019807 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-I19 DOE Joint Genome Institute (JGI) 3300019807 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 527768 524 1 0 1 0 SRX4663277 Unrestricted 0.0 single_particle_sort 3300015218 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - unknown bacterium SCGC_AG-290-D09 DOE Joint Genome Institute (JGI) 3300015218 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 254001 304 0 0 0 0 SRX3578553 Unrestricted 0.0 single_particle_sort 3300019433 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16020 DOE Joint Genome Institute (JGI) 3300019433 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 2505930 2731 1 0 1 0 SRX3985674 Unrestricted 0.0 single_particle_sort 3300016201 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Parcubacteria bacterium SCGC_AG-278-N19 DOE Joint Genome Institute (JGI) 3300016201 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 236670 281 0 0 0 0 SRX3578499 Unrestricted 0.0 single_particle_sort 3300026581 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-L13 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026581 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 45091 55 0 0 0 0 0.0 single_particle_sort 3300024379 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.K19 DOE Joint Genome Institute (JGI) 3300024379 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 139461 182 0 0 0 0 SRX4547861 Unrestricted 0.0 single_particle_sort 3300023150 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.J10 DOE Joint Genome Institute (JGI) 3300023150 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1302617 1406 1 0 1 0 SRX4509178 Unrestricted 0.0 single_particle_sort 3300033904 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.M15 DOE Joint Genome Institute (JGI) 3300033904 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 351873 433 0 0 2 0 SRX7626539 Unrestricted 0.0 single_particle_sort 3300019607 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-3-H18 DOE Joint Genome Institute (JGI) 3300019607 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 62396 83 0 0 0 0 SRX3553142 Unrestricted 0.0 single_particle_sort 3300033191 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.L13 DOE Joint Genome Institute (JGI) 3300033191 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 416968 425 0 0 0 0 SRX7628766 Unrestricted 0.0 single_particle_sort 3300032370 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.H16 DOE Joint Genome Institute (JGI) 3300032370 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 602375 664 0 0 0 0 SRX6433687 Unrestricted 0.0 single_particle_sort 3300050826 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_D7_SVS DOE Joint Genome Institute (JGI) 3300050826 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 149776 183 0 0 0 0 Restricted 0.0 single_particle_sort 3300033587 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P9_K20 DOE Joint Genome Institute (JGI) 3300033587 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 20011 22 0 0 1 0 SRX7531238 Unrestricted 0.0 single_particle_sort 3300023482 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.E10 DOE Joint Genome Institute (JGI) 3300023482 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 1159081 1254 0 0 0 0 SRX4548280 Unrestricted 0.0 single_particle_sort 3300033421 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.I10 DOE Joint Genome Institute (JGI) 3300033421 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 1001225 1098 1 0 1 0 SRX7630350 Unrestricted 0.0 single_particle_sort 3300071186 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_edMDA_G06_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071186 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 459786 505 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300024800 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-A22 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024800 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 206855 248 0 0 0 0 0.0 single_particle_sort 3300019406 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16032 DOE Joint Genome Institute (JGI) 3300019406 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 1616134 1844 1 0 1 0 SRX3986859 Unrestricted 0.0 single_particle_sort 3300016140 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-578-C13 DOE Joint Genome Institute (JGI) 3300016140 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 568329 646 1 0 1 0 SRX3579182 Unrestricted 0.0 single_particle_sort 3300071323 *Microbiome Permanent Draft Comparing whole genome amplification chemistries for bacterial single cell genomics Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - scBac_PTA_EnviBac_sc_plate3well3B_S10 Stanford University 3300071323 Metagenome - Single Particle Sort Spades v. 3.15.3 released per request -- IMGSUPP-4358 No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 2059974 1920 1 0 1 0 0.0 single_particle_sort 3300022953 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.D13 DOE Joint Genome Institute (JGI) 3300022953 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 86927 120 0 0 0 0 SRX4454609 Unrestricted 0.0 single_particle_sort 3300034708 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.1.K15 DOE Joint Genome Institute (JGI) 3300034708 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 1585714 1676 1 0 1 0 SRX8390428 Unrestricted 0.0 single_particle_sort 3300023868 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.M16 DOE Joint Genome Institute (JGI) 3300023868 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 708563 750 1 0 1 0 SRX4525498 Unrestricted 0.0 single_particle_sort 3300023361 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.L10 DOE Joint Genome Institute (JGI) 3300023361 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1924952 2068 1 0 0 0 SRX4338067 Unrestricted 0.0 single_particle_sort 3300022643 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States - Chromatiales bacterium JGI AMGPRD042217_8 DOE Joint Genome Institute (JGI) 3300022643 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 2375948 2632 1 0 0 0 SRX4411678 Unrestricted 0.0 single_particle_sort 3300024600 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-J23 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024600 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 33575 39 0 0 0 0 0.0 single_particle_sort 3300015938 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-I13 DOE Joint Genome Institute (JGI) 3300015938 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 343420 391 0 0 0 0 SRX3560698 Unrestricted 0.0 single_particle_sort 3300016040 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-M09 DOE Joint Genome Institute (JGI) 3300016040 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 458971 522 1 0 0 0 SRX3563934 Unrestricted 0.0 single_particle_sort 3300038068 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.G13 DOE Joint Genome Institute (JGI) 3300038068 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 323247 381 0 0 0 0 SRX9411465 Unrestricted 0.0 single_particle_sort 3300051148 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_D13_SVS DOE Joint Genome Institute (JGI) 3300051148 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 69430 128 0 0 0 0 Restricted 0.0 single_particle_sort 3300023449 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.H9 DOE Joint Genome Institute (JGI) 3300023449 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 219828 270 0 0 0 0 SRX4548440 Unrestricted 0.0 single_particle_sort 3300019551 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-J17 DOE Joint Genome Institute (JGI) 3300019551 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 28519 39 0 0 0 0 SRX3548488 Unrestricted 0.0 single_particle_sort 3300033665 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P2_I22 DOE Joint Genome Institute (JGI) 3300033665 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 11791 12 0 0 0 0 SRX7530066 Unrestricted 0.0 single_particle_sort 3300033837 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.E21 DOE Joint Genome Institute (JGI) 3300033837 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 1327235 1493 1 0 1 0 SRX7630460 Unrestricted 0.0 single_particle_sort 3300041358 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.N14 DOE Joint Genome Institute (JGI) 3300041358 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2165051 2327 0 0 0 0 SRX9647200 Unrestricted 0.0 single_particle_sort 3300035264 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_I7 DOE Joint Genome Institute (JGI) 3300035264 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 71033 101 0 0 0 0 SRX9537908 Unrestricted 0.0 single_particle_sort 3300036749 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.J19.redo DOE Joint Genome Institute (JGI) 3300036749 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 1249244 1261 0 0 0 0 SRX8910304 Unrestricted 0.0 single_particle_sort 3300041651 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.H13 DOE Joint Genome Institute (JGI) 3300041651 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 310353 318 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300024705 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-K02 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024705 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 110768 129 0 0 0 0 0.0 single_particle_sort 3300033865 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.H8 DOE Joint Genome Institute (JGI) 3300033865 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 353516 440 0 0 0 0 SRX7626224 Unrestricted 0.0 single_particle_sort 3300018445 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_D6 DOE Joint Genome Institute (JGI) 3300018445 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 269011 285 0 0 0 0 SRX4652728 Unrestricted 0.0 single_particle_sort 3300016223 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-D04 DOE Joint Genome Institute (JGI) 3300016223 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 334456 435 0 0 0 0 SRX3562891 Unrestricted 0.0 single_particle_sort 3300037917 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.E8 DOE Joint Genome Institute (JGI) 3300037917 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 252724 297 0 0 1 0 SRX9410333 Unrestricted 0.0 single_particle_sort 3300041396 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.K17 DOE Joint Genome Institute (JGI) 3300041396 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2647908 2687 0 0 0 0 SRX9646393 Unrestricted 0.0 single_particle_sort 3300018262 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_G5 DOE Joint Genome Institute (JGI) 3300018262 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 806870 824 0 0 0 0 SRX4652735 Unrestricted 0.0 single_particle_sort 3300033436 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.E13 DOE Joint Genome Institute (JGI) 3300033436 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 599100 612 0 0 0 0 SRX7630356 Unrestricted 0.0 single_particle_sort 3300016459 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_C22 DOE Joint Genome Institute (JGI) 3300016459 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1421150 1440 0 0 0 0 SRX4065914 Unrestricted 0.0 single_particle_sort 3300018114 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-C18 DOE Joint Genome Institute (JGI) 3300018114 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 286860 314 0 0 0 0 SRX4815110 Unrestricted 0.0 single_particle_sort 3300050831 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_F14_SVS DOE Joint Genome Institute (JGI) 3300050831 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 102439 139 0 0 0 0 Restricted 0.0 single_particle_sort 3300024418 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.D8 DOE Joint Genome Institute (JGI) 3300024418 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 317850 396 0 0 1 0 SRX4547858 Unrestricted 0.0 single_particle_sort 3300034597 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.D4 DOE Joint Genome Institute (JGI) 3300034597 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1575977 1661 1 0 1 0 SRX8394689 Unrestricted 0.0 single_particle_sort 3300010712 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.04.I19 DOE Joint Genome Institute (JGI) 3300010712 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 31419 22 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300028501 *Microbiome Permanent Draft University of Copenhagen Baltic Metagenome Sorted microbial cells from the Baltic Sea - Library 2 Science for Life Laboratory (SciLifeLab), Sweden 3300028501 Metagenome - Single Particle Sort Megahit v. 1.1.1 released by JGI data releasing policy No Yes philip.heller@sjsu.edu Philip Heller No Environmental Aquatic Oceanic Marine Photic zone marine 55.8 15.6 5000029 4626 2 0 3 0 0.0 single_particle_sort 3300010798 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_9_SCGC_AG-138-E17 DOE Joint Genome Institute (JGI) 3300010798 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 371784 452 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300023830 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR46.Redo.05.C16 DOE Joint Genome Institute (JGI) 3300023830 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.242 21.4899 542323 582 0 0 0 0 SRX4391262 Unrestricted 0.0 single_particle_sort 3300018345 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_I18 DOE Joint Genome Institute (JGI) 3300018345 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1575036 1512 1 0 1 0 SRX4652713 Unrestricted 0.0 single_particle_sort 3300041383 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.G11 DOE Joint Genome Institute (JGI) 3300041383 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1209768 1143 0 0 0 0 SRX9645416 Unrestricted 0.0 single_particle_sort 3300016210 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-B10 DOE Joint Genome Institute (JGI) 3300016210 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 288963 363 0 0 0 0 SRX3562636 Unrestricted 0.0 single_particle_sort 3300018281 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_G14 DOE Joint Genome Institute (JGI) 3300018281 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 1131320 1047 1 0 1 0 SRX4646803 Unrestricted 0.0 single_particle_sort 3300038130 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.E5 DOE Joint Genome Institute (JGI) 3300038130 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 1102026 1298 1 0 1 0 SRX9411750 Unrestricted 0.0 single_particle_sort 3300035821 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0813.Sybr.01.J10 DOE Joint Genome Institute (JGI) 3300035821 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 260185 293 1 0 1 0 SRX8894095 Unrestricted 0.0 single_particle_sort 3300010851 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Anoxic lake water microbial communities from Lake Kivu, Rwanda - MDM2.Kivu325.minimeta.L3 DOE Joint Genome Institute (JGI) 3300010851 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Unclassified Anoxic lake water -2.0288 29.1756 2295979 2615 2 0 1 0 Unrestricted 0.0 single_particle_sort 3300023630 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.I22 DOE Joint Genome Institute (JGI) 3300023630 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 33175 41 0 0 0 0 SRX4547918 Unrestricted 0.0 single_particle_sort 3300019597 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-D08 DOE Joint Genome Institute (JGI) 3300019597 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 48244 74 0 0 0 0 SRX3556434 Unrestricted 0.0 single_particle_sort 3300033303 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.H7 DOE Joint Genome Institute (JGI) 3300033303 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 304225 354 0 0 0 0 SRX7630486 Unrestricted 0.0 single_particle_sort 3300038030 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.D19 DOE Joint Genome Institute (JGI) 3300038030 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 382689 504 0 0 0 0 SRX9411188 Unrestricted 0.0 single_particle_sort 3300024716 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-J17 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024716 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 120616 135 0 0 0 0 0.0 single_particle_sort 3300015960 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Microgenometes bacterium SCGC_AG-274-P02 DOE Joint Genome Institute (JGI) 3300015960 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 359662 428 1 0 1 0 SRX3578303 Unrestricted 0.0 single_particle_sort 3300023349 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.F9 DOE Joint Genome Institute (JGI) 3300023349 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 1136763 1322 1 0 1 0 SRX4548850 Unrestricted 0.0 single_particle_sort 3300038271 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.G7 DOE Joint Genome Institute (JGI) 3300038271 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 979534 1274 0 1 2 0 SRX9411290 Unrestricted 0.0 single_particle_sort 3300038025 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.J18 DOE Joint Genome Institute (JGI) 3300038025 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 798854 1037 0 0 1 0 SRX9411121 Unrestricted 0.0 single_particle_sort 3300010756 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.04.M18 DOE Joint Genome Institute (JGI) 3300010756 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 163373 215 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300013084 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.G18 DOE Joint Genome Institute (JGI) 3300013084 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1003004 1227 1 0 2 0 SRX3366948 Unrestricted 0.0 single_particle_sort 3300035726 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_C5 DOE Joint Genome Institute (JGI) 3300035726 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 24520 38 0 0 0 0 SRX10045216 Unrestricted 0.0 single_particle_sort 3300015576 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown bacterium SCGC_AG-122-M02 DOE Joint Genome Institute (JGI) 3300015576 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 732361 799 0 0 0 0 SRX3574083 Unrestricted 0.0 single_particle_sort 3300024392 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.L18 DOE Joint Genome Institute (JGI) 3300024392 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 401061 395 0 0 0 0 SRX4547857 Unrestricted 0.0 single_particle_sort 3300015148 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - unknown archaeum SCGC_AG-290-A08 DOE Joint Genome Institute (JGI) 3300015148 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 742922 851 1 0 0 0 SRX3578545 Unrestricted 0.0 single_particle_sort 3300023625 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.G18 DOE Joint Genome Institute (JGI) 3300023625 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 1382003 1487 1 0 1 0 SRX4547984 Unrestricted 0.0 single_particle_sort 3300015704 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-H20 DOE Joint Genome Institute (JGI) 3300015704 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 102236 145 0 0 0 0 SRX3561041 Unrestricted 0.0 single_particle_sort 3300015927 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Microgenometes bacterium SCGC_AG-274-O10 DOE Joint Genome Institute (JGI) 3300015927 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 340493 382 1 0 1 0 SRX3578301 Unrestricted 0.0 single_particle_sort 3300016359 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-O05 DOE Joint Genome Institute (JGI) 3300016359 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 824896 852 0 0 1 0 SRX3580282 Unrestricted 0.0 single_particle_sort 3300038125 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.L7 DOE Joint Genome Institute (JGI) 3300038125 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 2002998 2008 1 0 1 0 SRX9411748 Unrestricted 0.0 single_particle_sort 3300041126 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.K17 DOE Joint Genome Institute (JGI) 3300041126 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1841974 1791 0 0 0 0 SRX9668760 Unrestricted 0.0 single_particle_sort 3300024590 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-A20 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024590 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 31359 23 0 0 0 0 0.0 single_particle_sort 3300024752 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-P08 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024752 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 128854 172 0 0 0 0 0.0 single_particle_sort 3300033336 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.M4 DOE Joint Genome Institute (JGI) 3300033336 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 181628 199 0 0 0 0 SRX7630474 Unrestricted 0.0 single_particle_sort 3300015543 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-M16 DOE Joint Genome Institute (JGI) 3300015543 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 499628 582 0 0 0 0 SRX3550854 Unrestricted 0.0 single_particle_sort 3300024611 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-P09 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024611 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 47325 54 0 0 0 0 0.0 single_particle_sort 3300023825 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.M14 DOE Joint Genome Institute (JGI) 3300023825 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 493548 556 0 0 1 0 SRX4523200 Unrestricted 0.0 single_particle_sort 3300015514 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown bacterium SCGC_AG-122-J09 DOE Joint Genome Institute (JGI) 3300015514 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 453662 404 2 0 1 0 SRX3573092 Unrestricted 0.0 single_particle_sort 3300023762 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.C17 DOE Joint Genome Institute (JGI) 3300023762 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 182674 217 0 0 0 0 SRX4548275 Unrestricted 0.0 single_particle_sort 3300038259 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.05.L17 DOE Joint Genome Institute (JGI) 3300038259 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 269127 300 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300021801 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.J5 DOE Joint Genome Institute (JGI) 3300021801 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 494614 538 1 0 1 0 SRX3989617 Unrestricted 0.0 single_particle_sort 3300050780 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_C17_SVS DOE Joint Genome Institute (JGI) 3300050780 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 203289 218 0 0 0 0 Restricted 0.0 single_particle_sort 3300018434 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_H19 DOE Joint Genome Institute (JGI) 3300018434 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 353810 361 0 0 0 0 SRX4652738 Unrestricted 0.0 single_particle_sort 3300019945 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-D15 DOE Joint Genome Institute (JGI) 3300019945 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 117615 152 0 0 0 0 SRX4653780 Unrestricted 0.0 single_particle_sort 3300019655 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-G22 DOE Joint Genome Institute (JGI) 3300019655 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 144877 189 0 0 0 0 SRX3903137 Unrestricted 0.0 single_particle_sort 3300028616 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.N8 DOE Joint Genome Institute (JGI) 3300028616 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 58877 68 0 0 0 0 SRX5093717 Unrestricted 0.0 single_particle_sort 3300023978 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.N5 DOE Joint Genome Institute (JGI) 3300023978 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 1703147 1846 0 0 0 0 SRX4548066 Unrestricted 0.0 single_particle_sort 3300021733 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.K18 DOE Joint Genome Institute (JGI) 3300021733 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 491686 546 0 0 0 0 SRX4009714 Unrestricted 0.0 single_particle_sort 3300034602 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.K19 DOE Joint Genome Institute (JGI) 3300034602 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1193944 1234 1 0 1 0 SRX8394701 Unrestricted 0.0 single_particle_sort 3300014995 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-2.F18 DOE Joint Genome Institute (JGI) 3300014995 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 197819 254 1 0 0 0 Restricted 0.0 single_particle_sort 3300022966 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.E18 DOE Joint Genome Institute (JGI) 3300022966 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 416625 473 0 0 0 0 SRX4419802 Unrestricted 0.0 single_particle_sort 3300038093 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .L12 DOE Joint Genome Institute (JGI) 3300038093 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 523227 750 0 0 0 0 SRX9411563 Unrestricted 0.0 single_particle_sort 3300038193 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.F19 DOE Joint Genome Institute (JGI) 3300038193 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 898702 1102 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023893 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.H5 DOE Joint Genome Institute (JGI) 3300023893 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 832148 859 1 0 1 0 SRX4523763 Unrestricted 0.0 single_particle_sort 3300021706 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.J19 DOE Joint Genome Institute (JGI) 3300021706 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 408282 468 0 0 0 0 SRX4007659 Unrestricted 0.0 single_particle_sort 3300024774 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-J15 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024774 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 166189 202 0 0 0 0 0.0 single_particle_sort 3300018176 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_N16 DOE Joint Genome Institute (JGI) 3300018176 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 88808 119 0 0 0 0 SRX4652581 Unrestricted 0.0 single_particle_sort 3300035785 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.H9 DOE Joint Genome Institute (JGI) 3300035785 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 604282 673 0 0 0 0 SRX8859313 Unrestricted 0.0 single_particle_sort 3300038086 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .I10 DOE Joint Genome Institute (JGI) 3300038086 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 303824 370 1 0 1 0 SRX9411541 Unrestricted 0.0 single_particle_sort 3300018334 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-M02 DOE Joint Genome Institute (JGI) 3300018334 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1417086 1424 0 0 0 0 SRX3979392 Unrestricted 0.0 single_particle_sort 3300023886 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.J19 DOE Joint Genome Institute (JGI) 3300023886 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 792867 855 1 0 1 0 SRX4547507 Unrestricted 0.0 single_particle_sort 3300019579 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-I18 DOE Joint Genome Institute (JGI) 3300019579 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 39722 59 0 0 0 0 SRX3562467 Unrestricted 0.0 single_particle_sort 3300018143 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - uncultured microorganism JGI MDM2 ZSSED05-2-M16 DOE Joint Genome Institute (JGI) 3300018143 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 400451 491 0 0 0 0 SRX3917993 Unrestricted 0.0 single_particle_sort 3300038186 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.N11 DOE Joint Genome Institute (JGI) 3300038186 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 904483 1075 1 0 1 0 SRX9411806 Unrestricted 0.0 single_particle_sort 3300015775 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-D16 DOE Joint Genome Institute (JGI) 3300015775 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 205445 231 0 0 0 0 SRX3560976 Unrestricted 0.0 single_particle_sort 3300041185 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.I7 DOE Joint Genome Institute (JGI) 3300041185 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 356874 387 0 0 0 0 SRX9523940 Unrestricted 0.0 single_particle_sort 3300016295 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - Chloroflexi_bacterium_SCGC_AG-640-C18 DOE Joint Genome Institute (JGI) 3300016295 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 712920 751 1 0 0 0 SRX3784361 Unrestricted 0.0 single_particle_sort 3300050909 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-B08 DOE Joint Genome Institute (JGI) 3300050909 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 165925 218 0 0 0 0 Restricted 0.0 single_particle_sort 3300023781 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.H19 DOE Joint Genome Institute (JGI) 3300023781 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 266118 329 0 0 0 0 SRX4548267 Unrestricted 0.0 single_particle_sort 3300019802 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-J17 DOE Joint Genome Institute (JGI) 3300019802 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 292884 356 1 0 1 0 SRX4663324 Unrestricted 0.0 single_particle_sort 3300032577 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.J6 DOE Joint Genome Institute (JGI) 3300032577 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 679355 698 0 0 0 0 SRX6430395 Unrestricted 0.0 single_particle_sort 3300033380 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.D7 DOE Joint Genome Institute (JGI) 3300033380 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 500937 493 0 0 0 0 SRX7627208 Unrestricted 0.0 single_particle_sort 3300071294 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_WGAX_D11_scBac_plate.C DOE Joint Genome Institute (JGI) 3300071294 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 209334 234 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300021715 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.M16 DOE Joint Genome Institute (JGI) 3300021715 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 463795 464 0 0 0 0 SRX4009689 Unrestricted 0.0 single_particle_sort 3300019602 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-A20 DOE Joint Genome Institute (JGI) 3300019602 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 84917 75 0 0 0 0 SRX4814144 Unrestricted 0.0 single_particle_sort 3300023521 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.C14 DOE Joint Genome Institute (JGI) 3300023521 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 622952 744 1 0 1 0 SRX4548276 Unrestricted 0.0 single_particle_sort 3300033582 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P1_N15 DOE Joint Genome Institute (JGI) 3300033582 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 21751 30 0 0 0 0 SRX7529892 Unrestricted 0.0 single_particle_sort 3300041300 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.K14 DOE Joint Genome Institute (JGI) 3300041300 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 831475 879 0 0 0 0 SRX9657099 Unrestricted 0.0 single_particle_sort 3300035706 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_B10 DOE Joint Genome Institute (JGI) 3300035706 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 633474 806 0 0 1 0 SRX10045422 Unrestricted 0.0 single_particle_sort 3300038005 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.L5 DOE Joint Genome Institute (JGI) 3300038005 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 1151899 1333 1 0 1 0 SRX9409550 Unrestricted 0.0 single_particle_sort 3300023463 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.K22 DOE Joint Genome Institute (JGI) 3300023463 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 596849 768 0 0 1 0 SRX4548452 Unrestricted 0.0 single_particle_sort 3300015584 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown archaeum SCGC_AG-122-E10 DOE Joint Genome Institute (JGI) 3300015584 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 855735 970 1 0 1 0 SRX3572002 Unrestricted 0.0 single_particle_sort 3300071191 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_edMDA_C04_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071191 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 818258 948 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023605 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.J7 DOE Joint Genome Institute (JGI) 3300023605 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 580124 755 0 0 0 0 SRX4415593 Unrestricted 0.0 single_particle_sort 3300022997 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.G22 DOE Joint Genome Institute (JGI) 3300022997 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 842168 1032 1 0 0 0 SRX4416584 Unrestricted 0.0 single_particle_sort 3300015907 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Microgenometes bacterium SCGC_AG-274-G18 DOE Joint Genome Institute (JGI) 3300015907 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 314345 361 1 0 0 0 SRX3578256 Unrestricted 0.0 single_particle_sort 3300038105 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .M21 DOE Joint Genome Institute (JGI) 3300038105 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 850286 1092 0 0 1 0 SRX9411635 Unrestricted 0.0 single_particle_sort 3300041106 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.J19 DOE Joint Genome Institute (JGI) 3300041106 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 865379 902 1 0 0 0 SRX9654416 Unrestricted 0.0 single_particle_sort 3300015724 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-D20 DOE Joint Genome Institute (JGI) 3300015724 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 141524 178 1 0 0 0 SRX3560676 Unrestricted 0.0 single_particle_sort 3300026596 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-F11 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026596 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 80909 101 0 0 0 0 0.0 single_particle_sort 3300023805 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.L16 DOE Joint Genome Institute (JGI) 3300023805 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 395286 460 0 0 0 0 SRX4548067 Unrestricted 0.0 single_particle_sort 3300035733 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.J22 DOE Joint Genome Institute (JGI) 3300035733 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 932329 1023 0 0 0 0 SRX8857420 Unrestricted 0.0 single_particle_sort 3300018370 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_J10 DOE Joint Genome Institute (JGI) 3300018370 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1691992 1694 0 0 0 0 SRX4649756 Unrestricted 0.0 single_particle_sort 3300036618 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.C12 DOE Joint Genome Institute (JGI) 3300036618 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 631841 767 1 0 1 0 SRX8902812 Unrestricted 0.0 single_particle_sort 3300023317 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.I11 DOE Joint Genome Institute (JGI) 3300023317 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 216040 220 1 0 1 0 SRX4548725 Unrestricted 0.0 single_particle_sort 3300019638 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-D15 DOE Joint Genome Institute (JGI) 3300019638 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 66971 114 0 0 0 0 SRX3561048 Unrestricted 0.0 single_particle_sort 3300035801 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.N7 DOE Joint Genome Institute (JGI) 3300035801 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 377892 431 0 0 0 0 SRX8861266 Unrestricted 0.0 single_particle_sort 3300033410 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.K11 DOE Joint Genome Institute (JGI) 3300033410 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 522227 535 0 0 0 0 SRX7630349 Unrestricted 0.0 single_particle_sort 3300041133 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.M9 DOE Joint Genome Institute (JGI) 3300041133 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1238716 1292 0 0 0 0 SRX9669574 Unrestricted 0.0 single_particle_sort 3300041344 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.J11 DOE Joint Genome Institute (JGI) 3300041344 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 3165659 3194 1 0 1 0 SRX9646937 Unrestricted 0.0 single_particle_sort 3300033323 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.I5 DOE Joint Genome Institute (JGI) 3300033323 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 153822 187 0 0 0 0 SRX7630489 Unrestricted 0.0 single_particle_sort 3300023616 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.H15 DOE Joint Genome Institute (JGI) 3300023616 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 923886 1032 0 0 1 0 SRX4415396 Unrestricted 0.0 single_particle_sort 3300024730 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-G20 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024730 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 120937 153 0 0 0 0 0.0 single_particle_sort 3300035715 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_M12 DOE Joint Genome Institute (JGI) 3300035715 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 112266 139 0 0 0 0 SRX10045586 Unrestricted 0.0 single_particle_sort 3300038016 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.C12 DOE Joint Genome Institute (JGI) 3300038016 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 767252 882 1 0 1 0 SRX9410332 Unrestricted 0.0 single_particle_sort 3300024002 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.N14 DOE Joint Genome Institute (JGI) 3300024002 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 2455448 2567 1 0 1 0 SRX4549593 Unrestricted 0.0 single_particle_sort 3300022951 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.M12 DOE Joint Genome Institute (JGI) 3300022951 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 39284 47 0 0 0 0 SRX4419804 Unrestricted 0.0 single_particle_sort 3300033259 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.N16 DOE Joint Genome Institute (JGI) 3300033259 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 277936 340 0 0 0 0 SRX7630664 Unrestricted 0.0 single_particle_sort 3300023816 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.N13 DOE Joint Genome Institute (JGI) 3300023816 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 430504 513 1 0 1 0 SRX4549396 Unrestricted 0.0 single_particle_sort 3300034638 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.D7 DOE Joint Genome Institute (JGI) 3300034638 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 452240 463 0 0 0 0 SRX8390602 Unrestricted 0.0 single_particle_sort 3300015154 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - unknown bacterium SCGC_AG-290-J22 DOE Joint Genome Institute (JGI) 3300015154 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 1690124 1792 1 0 1 0 SRX3578735 Unrestricted 0.0 single_particle_sort 3300022641 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States - Sphingomonadales bacterium JGI AMGPRD042217_11 DOE Joint Genome Institute (JGI) 3300022641 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 1722813 2006 1 0 1 0 SRX4414073 Unrestricted 0.0 single_particle_sort 3300016539 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - AC1_bacterium_SCGC_AG-650-C02 DOE Joint Genome Institute (JGI) 3300016539 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 791855 762 1 0 1 0 SRX3784698 Unrestricted 0.0 single_particle_sort 3300023363 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.M20 DOE Joint Genome Institute (JGI) 3300023363 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 2240313 2371 1 0 1 0 SRX4548793 Unrestricted 0.0 single_particle_sort 3300024102 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.C18 DOE Joint Genome Institute (JGI) 3300024102 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1474744 1679 1 0 1 0 SRX4519525 Unrestricted 0.0 single_particle_sort 3300041115 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.J6 DOE Joint Genome Institute (JGI) 3300041115 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 192818 255 0 0 0 0 SRX9654514 Unrestricted 0.0 single_particle_sort 3300038116 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .G20 DOE Joint Genome Institute (JGI) 3300038116 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 381739 493 0 0 0 0 SRX9411632 Unrestricted 0.0 single_particle_sort 3300071321 *Microbiome Permanent Draft Comparing whole genome amplification chemistries for bacterial single cell genomics Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - scBac_PTA_EnviBac_sc_plate3well3D_S12 Stanford University 3300071321 Metagenome - Single Particle Sort Spades v. 3.15.3 released per request -- IMGSUPP-4358 No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 1046496 1248 4 0 5 0 0.0 single_particle_sort 3300016236 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Omnitrophica bacterium SCGC_AG-574-K21 DOE Joint Genome Institute (JGI) 3300016236 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 475721 501 1 0 2 0 SRX3578852 Unrestricted 0.0 single_particle_sort 3300033423 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.K4 DOE Joint Genome Institute (JGI) 3300033423 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 790682 772 1 0 1 0 SRX7630290 Unrestricted 0.0 single_particle_sort 3300023942 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.K21 DOE Joint Genome Institute (JGI) 3300023942 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 1140808 1206 1 0 1 0 SRX4549591 Unrestricted 0.0 single_particle_sort 3300023652 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.E17 DOE Joint Genome Institute (JGI) 3300023652 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 346577 399 0 0 0 0 SRX4416320 Unrestricted 0.0 single_particle_sort 3300038052 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.E14 DOE Joint Genome Institute (JGI) 3300038052 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 318166 405 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033193 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.K13 DOE Joint Genome Institute (JGI) 3300033193 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 787062 900 0 0 1 0 SRX7628767 Unrestricted 0.0 single_particle_sort 3300033310 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.H6 DOE Joint Genome Institute (JGI) 3300033310 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 513901 555 1 0 1 0 SRX7630495 Unrestricted 0.0 single_particle_sort 3300024585 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-N18 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024585 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 17604 16 0 0 0 0 0.0 single_particle_sort 3300037949 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.J12 DOE Joint Genome Institute (JGI) 3300037949 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 1946923 1751 1 0 0 0 SRX9410972 Unrestricted 0.0 single_particle_sort 3300021785 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.D20 DOE Joint Genome Institute (JGI) 3300021785 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1835210 1970 1 0 1 0 SRX3990302 Unrestricted 0.0 single_particle_sort 3300024725 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-A10 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024725 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 116872 149 0 0 0 0 0.0 single_particle_sort 3300023417 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.N21 DOE Joint Genome Institute (JGI) 3300023417 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1104738 1201 0 0 0 0 SRX4520592 Unrestricted 0.0 single_particle_sort 3300015569 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - Parcubacteria bacterium SCGC_AG-122-J23 DOE Joint Genome Institute (JGI) 3300015569 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 618357 744 0 0 0 0 SRX3573090 Unrestricted 0.0 single_particle_sort 3300026583 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-F13 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026583 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 65464 79 0 0 0 0 0.0 single_particle_sort 3300023852 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.G6 DOE Joint Genome Institute (JGI) 3300023852 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 606174 696 0 0 1 0 SRX4525775 Unrestricted 0.0 single_particle_sort 3300019431 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16027 DOE Joint Genome Institute (JGI) 3300019431 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 2417807 2658 1 0 1 0 SRX3985684 Unrestricted 0.0 single_particle_sort 3300033598 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P2_G5 DOE Joint Genome Institute (JGI) 3300033598 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 8737 15 0 0 0 0 SRX7530077 Unrestricted 0.0 single_particle_sort 3300016203 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown bacterium SCGC_AG-278-G02 DOE Joint Genome Institute (JGI) 3300016203 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 232399 285 1 0 1 0 SRX3578379 Unrestricted 0.0 single_particle_sort 3300033702 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_M2 DOE Joint Genome Institute (JGI) 3300033702 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 6899 6 0 0 0 0 SRX7528828 Unrestricted 0.0 single_particle_sort 3300022979 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.F11 DOE Joint Genome Institute (JGI) 3300022979 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 434486 543 0 0 0 0 SRX4416653 Unrestricted 0.0 single_particle_sort 3300024662 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-A19 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024662 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 72682 90 0 0 0 0 0.0 single_particle_sort 3300041320 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.F6 DOE Joint Genome Institute (JGI) 3300041320 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 641216 698 1 0 1 0 SRX9646851 Unrestricted 0.0 single_particle_sort 3300019622 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-F17 DOE Joint Genome Institute (JGI) 3300019622 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 73162 98 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300050795 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_I23_SVS DOE Joint Genome Institute (JGI) 3300050795 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 57718 67 0 0 0 0 Restricted 0.0 single_particle_sort 3300037987 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.C21 DOE Joint Genome Institute (JGI) 3300037987 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 216361 281 0 0 0 0 SRX9411024 Unrestricted 0.0 single_particle_sort 3300041335 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.E16 DOE Joint Genome Institute (JGI) 3300041335 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2637106 2601 1 0 1 0 SRX9646880 Unrestricted 0.0 single_particle_sort 3300048737 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_D13_SVS DOE Joint Genome Institute (JGI) 3300048737 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 38424 66 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300034566 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.J18 DOE Joint Genome Institute (JGI) 3300034566 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1188983 1264 0 0 1 0 SRX8393463 Unrestricted 0.0 single_particle_sort 3300021098 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted archaeal cell/s from hot spring water in Nymph Lake, Yellowstone National Park, Wyoming, USA - Nanoarchaeota archaeon AD-903-F05 Oregon State University 3300021098 Metagenome - Single Particle Sort Spades v2.2.1 Manuscript to be submitted soon No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring water 44.75187 -110.7288 3.5 125027 175 0 0 0 0 0.0 single_particle_sort 3300010761 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_47_SCGC_AG-159-P18 DOE Joint Genome Institute (JGI) 3300010761 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 227996 242 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300018184 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_L20 DOE Joint Genome Institute (JGI) 3300018184 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 311866 331 0 0 0 0 SRX4652222 Unrestricted 0.0 single_particle_sort 3300037378 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.I16.redo DOE Joint Genome Institute (JGI) 3300037378 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 902983 875 0 0 1 0 SRX9402804 Unrestricted 0.0 single_particle_sort 3300038074 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.I19 DOE Joint Genome Institute (JGI) 3300038074 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 86122 93 1 0 1 0 SRX9411481 Unrestricted 0.0 single_particle_sort 3300023874 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.D8 DOE Joint Genome Institute (JGI) 3300023874 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 665839 763 0 0 0 0 SRX4525528 Unrestricted 0.0 single_particle_sort 3300041367 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.H19 DOE Joint Genome Institute (JGI) 3300041367 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 910982 962 2 0 1 0 SRX9648526 Unrestricted 0.0 single_particle_sort 3300015740 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-F19 DOE Joint Genome Institute (JGI) 3300015740 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 98310 129 0 0 0 0 SRX3551014 Unrestricted 0.0 single_particle_sort 3300024793 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-K10 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024793 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 185528 241 0 0 0 0 0.0 single_particle_sort 3300022260 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Acetothermia_bacterium_SCGC_AH-151-I19 Bigelow Laboratory for Ocean Sciences 3300022260 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 79915 82 1 0 0 0 0.0 single_particle_sort 3300050929 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-K13 DOE Joint Genome Institute (JGI) 3300050929 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 1199095 1374 0 0 0 0 Restricted 0.0 single_particle_sort 3300010782 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_44_SCGC_AG-159-O17 DOE Joint Genome Institute (JGI) 3300010782 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 324349 363 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035939 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.L9 DOE Joint Genome Institute (JGI) 3300035939 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 895014 975 0 0 0 0 SRX8862572 Unrestricted 0.0 single_particle_sort 3300023165 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.D19 DOE Joint Genome Institute (JGI) 3300023165 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 2048544 2191 1 0 2 0 SRX4509815 Unrestricted 0.0 single_particle_sort 3300041313 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.L18 DOE Joint Genome Institute (JGI) 3300041313 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 456977 472 0 0 0 0 SRX9646793 Unrestricted 0.0 single_particle_sort 3300019566 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - uncultured microorganism JGI MDM2 ZSSED05-2-G15 DOE Joint Genome Institute (JGI) 3300019566 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 33746 49 0 0 0 0 SRX3917657 Unrestricted 0.0 single_particle_sort 3300016280 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown archaeum SCGC_AG-574-K02 DOE Joint Genome Institute (JGI) 3300016280 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 677436 714 1 0 1 0 SRX3578849 Unrestricted 0.0 single_particle_sort 3300018211 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_D5 DOE Joint Genome Institute (JGI) 3300018211 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 537737 586 0 0 1 0 SRX4652730 Unrestricted 0.0 single_particle_sort 3300041190 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.1.C13 DOE Joint Genome Institute (JGI) 3300041190 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 391164 493 0 0 0 0 SRX9654896 Unrestricted 0.0 single_particle_sort 3300018169 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_G15 DOE Joint Genome Institute (JGI) 3300018169 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 718562 845 1 0 0 0 SRX4647856 Unrestricted 0.0 single_particle_sort 3300023137 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.F14 DOE Joint Genome Institute (JGI) 3300023137 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 660089 744 1 0 1 0 SRX4519080 Unrestricted 0.0 single_particle_sort 3300041090 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.M4 DOE Joint Genome Institute (JGI) 3300041090 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 81692 109 0 0 0 0 SRX9654472 Unrestricted 0.0 single_particle_sort 3300035790 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.J18 DOE Joint Genome Institute (JGI) 3300035790 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 1184784 1199 1 0 1 0 SRX8859683 Unrestricted 0.0 single_particle_sort 3300024786 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-N23 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024786 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 170110 218 0 0 0 0 0.0 single_particle_sort 3300021726 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.F15 DOE Joint Genome Institute (JGI) 3300021726 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 448493 518 0 0 0 0 SRX3990632 Unrestricted 0.0 single_particle_sort 3300036031 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_N20 DOE Joint Genome Institute (JGI) 3300036031 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 121990 169 0 0 0 0 SRX10076381 Unrestricted 0.0 single_particle_sort 3300024388 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Rhodanobacter bacterium JGI PFNR15_D11 DOE Joint Genome Institute (JGI) 3300024388 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 102373 132 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300021821 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.K8 DOE Joint Genome Institute (JGI) 3300021821 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 932052 1104 1 0 0 0 SRX3989453 Unrestricted 0.0 single_particle_sort 3300024881 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.K18 DOE Joint Genome Institute (JGI) 3300024881 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 493740 625 0 0 0 0 SRX4389907 Unrestricted 0.0 single_particle_sort 3300071246 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_E03_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071246 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 2548242 2921 2 0 6 0 Unrestricted 0.0 single_particle_sort 3300019970 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-G11 DOE Joint Genome Institute (JGI) 3300019970 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 410365 482 0 0 0 0 SRX4654665 Unrestricted 0.0 single_particle_sort 3300034622 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.L8 DOE Joint Genome Institute (JGI) 3300034622 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 989326 1062 1 0 1 0 SRX8395078 Unrestricted 0.0 single_particle_sort 3300021621 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.L14 DOE Joint Genome Institute (JGI) 3300021621 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 39671 51 0 0 0 0 SRX4009662 Unrestricted 0.0 single_particle_sort 3300024681 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-K09 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024681 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 89720 109 0 0 0 0 0.0 single_particle_sort 3300021636 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.N10 DOE Joint Genome Institute (JGI) 3300021636 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 60904 84 0 0 0 0 SRX4009647 Unrestricted 0.0 single_particle_sort 3300023891 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.J20 DOE Joint Genome Institute (JGI) 3300023891 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 800080 851 0 0 1 0 SRX4522487 Unrestricted 0.0 single_particle_sort 3300023398 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Deep Lake surface water, Antarctica - Uncultured microbe JGI DeepLkS.SYBR.02.F13 DOE Joint Genome Institute (JGI) 3300023398 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5558 78.1913 248119 296 0 0 0 0 SRX4547883 Unrestricted 0.0 single_particle_sort 3300033940 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.C12 DOE Joint Genome Institute (JGI) 3300033940 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 360210 393 0 0 0 0 SRX7626291 Unrestricted 0.0 single_particle_sort 3300016346 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown archaeum SCGC_AG-582-N15 DOE Joint Genome Institute (JGI) 3300016346 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 753516 828 1 0 1 0 SRX3580026 Unrestricted 0.0 single_particle_sort 3300038191 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.F7 DOE Joint Genome Institute (JGI) 3300038191 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 273045 349 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033650 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P2_P22 DOE Joint Genome Institute (JGI) 3300033650 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 33272 37 0 0 0 0 SRX7529890 Unrestricted 0.0 single_particle_sort 3300021836 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.F8 DOE Joint Genome Institute (JGI) 3300021836 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 2445038 2466 0 0 1 0 SRX3989616 Unrestricted 0.0 single_particle_sort 3300023510 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.G13 DOE Joint Genome Institute (JGI) 3300023510 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 549449 633 0 0 1 0 SRX4500600 Unrestricted 0.0 single_particle_sort 3300023758 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR46.Redo.05.H5 DOE Joint Genome Institute (JGI) 3300023758 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.242 21.4899 155834 174 0 0 0 0 SRX4391214 Unrestricted 0.0 single_particle_sort 3300016373 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-O23 DOE Joint Genome Institute (JGI) 3300016373 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 793118 877 1 0 1 0 SRX3580344 Unrestricted 0.0 single_particle_sort 3300051072 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_D20_SVS DOE Joint Genome Institute (JGI) 3300051072 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 96851 133 0 0 0 0 Restricted 0.0 single_particle_sort 3300010749 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.H14 DOE Joint Genome Institute (JGI) 3300010749 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 149590 186 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033850 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.K5 DOE Joint Genome Institute (JGI) 3300033850 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 460050 528 1 0 0 0 SRX7626153 Unrestricted 0.0 single_particle_sort 3300038091 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .K11 DOE Joint Genome Institute (JGI) 3300038091 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 100975 145 0 0 0 0 SRX9411564 Unrestricted 0.0 single_particle_sort 3300037894 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .J4 DOE Joint Genome Institute (JGI) 3300037894 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 1229905 1399 1 0 2 0 SRX9411525 Unrestricted 0.0 single_particle_sort 3300036026 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_F20 DOE Joint Genome Institute (JGI) 3300036026 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 145233 174 0 0 0 0 SRX10046773 Unrestricted 0.0 single_particle_sort 3300048728 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 159_J18_SVS DOE Joint Genome Institute (JGI) 3300048728 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 39094 54 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300021731 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.L17 DOE Joint Genome Institute (JGI) 3300021731 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 569481 641 0 0 0 0 SRX4009711 Unrestricted 0.0 single_particle_sort 3300023356 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.E17 DOE Joint Genome Institute (JGI) 3300023356 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1316252 1444 1 0 1 0 SRX4520368 Unrestricted 0.0 single_particle_sort 3300015099 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-D03 DOE Joint Genome Institute (JGI) 3300015099 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 275171 306 0 0 0 0 SRX3578310 Unrestricted 0.0 single_particle_sort 3300016104 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-N06 DOE Joint Genome Institute (JGI) 3300016104 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 514678 586 1 0 2 0 SRX3560798 Unrestricted 0.0 single_particle_sort 3300034732 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P9_E16 DOE Joint Genome Institute (JGI) 3300034732 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 14269 20 0 0 0 0 SRX8136696 Unrestricted 0.0 single_particle_sort 3300022992 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.C16 DOE Joint Genome Institute (JGI) 3300022992 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 991138 1159 1 0 2 0 SRX4416583 Unrestricted 0.0 single_particle_sort 3300024844 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-D10 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024844 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 159368 188 0 0 0 0 0.0 single_particle_sort 3300035895 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.H14 DOE Joint Genome Institute (JGI) 3300035895 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 986555 946 0 0 0 0 SRX8898656 Unrestricted 0.0 single_particle_sort 3300022109 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.F8 DOE Joint Genome Institute (JGI) 3300022109 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1396640 1451 1 0 1 0 SRX3998339 Unrestricted 0.0 single_particle_sort 3300019485 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-274-J07 DOE Joint Genome Institute (JGI) 3300019485 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 55458 75 0 0 0 0 SRX3903111 Unrestricted 0.0 single_particle_sort 3300021803 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.K13 DOE Joint Genome Institute (JGI) 3300021803 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 652480 690 1 0 0 0 SRX3989910 Unrestricted 0.0 single_particle_sort 3300023796 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.H16 DOE Joint Genome Institute (JGI) 3300023796 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 369026 408 0 0 0 0 SRX4549613 Unrestricted 0.0 single_particle_sort 3300016004 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG-582-A17 DOE Joint Genome Institute (JGI) 3300016004 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 375694 474 1 0 1 0 SRX3579944 Unrestricted 0.0 single_particle_sort 3300024644 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-C04 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024644 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 55234 80 0 0 0 0 0.0 single_particle_sort 3300033294 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.N12 DOE Joint Genome Institute (JGI) 3300033294 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 1103081 1086 0 0 0 0 SRX7627888 Unrestricted 0.0 single_particle_sort 3300015902 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-E16 DOE Joint Genome Institute (JGI) 3300015902 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 296254 353 0 0 2 0 SRX3546991 Unrestricted 0.0 single_particle_sort 3300015429 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-G17 DOE Joint Genome Institute (JGI) 3300015429 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 75300 102 0 0 0 0 SRX3560312 Unrestricted 0.0 single_particle_sort 3300022009 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - TA06 bacterium JGI MDM2 NGM80-1-L12 DOE Joint Genome Institute (JGI) 3300022009 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 513962 617 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300038057 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.E22 DOE Joint Genome Institute (JGI) 3300038057 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 517051 594 0 0 1 0 SRX9411385 Unrestricted 0.0 single_particle_sort 3300015845 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-F19 DOE Joint Genome Institute (JGI) 3300015845 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 78006 101 0 0 0 0 SRX3540069 Unrestricted 0.0 single_particle_sort 3300018200 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_I6 DOE Joint Genome Institute (JGI) 3300018200 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 472279 494 0 0 0 0 SRX4652809 Unrestricted 0.0 single_particle_sort 3300023523 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.C19 DOE Joint Genome Institute (JGI) 3300023523 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 867179 970 0 0 0 0 SRX4548279 Unrestricted 0.0 single_particle_sort 3300016473 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown bacterium SCGC_AG-657-P08 DOE Joint Genome Institute (JGI) 3300016473 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 1524759 1514 0 0 0 0 SRX3601906 Unrestricted 0.0 single_particle_sort 3300023657 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.I18 DOE Joint Genome Institute (JGI) 3300023657 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 441485 493 0 0 1 0 SRX4548015 Unrestricted 0.0 single_particle_sort 3300015645 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from a deep sea mud volcano in Anaximander Mountains, Eastern Mediterranean Sea - B25.2.2014 1114 MDM2 B25 p2 16S.L17.double-seq DOE Joint Genome Institute (JGI) 3300015645 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Mud volcano Marine Unclassified Deep sea volcano 35.3338 30.2722 610316 661 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035278 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_I10 DOE Joint Genome Institute (JGI) 3300035278 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 77016 95 0 0 0 0 SRX9539374 Unrestricted 0.0 single_particle_sort 3300023128 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.K8 DOE Joint Genome Institute (JGI) 3300023128 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 29105 34 0 0 0 0 SRX4509054 Unrestricted 0.0 single_particle_sort 3300015955 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - unknown_bacterium_SCGC_AG-640-J10 DOE Joint Genome Institute (JGI) 3300015955 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas Yes 30902854.0 Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 417178 415 0 0 0 0 SRX3784336 Unrestricted 0.0 single_particle_sort 3300016446 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Latescibacteria_bacterium_SCGC_AG-636-N03 DOE Joint Genome Institute (JGI) 3300016446 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 1456477 1341 0 0 0 0 SRX3784585 Unrestricted 0.0 single_particle_sort 3300023412 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.E11 DOE Joint Genome Institute (JGI) 3300023412 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 902533 1004 1 0 1 0 SRX4520195 Unrestricted 0.0 single_particle_sort 3300014475 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.I19 DOE Joint Genome Institute (JGI) 3300014475 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1157569 1645 1 0 1 0 SRX3366644 Unrestricted 0.0 single_particle_sort 3300023783 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.K12 DOE Joint Genome Institute (JGI) 3300023783 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 257849 330 0 0 0 0 SRX4525530 Unrestricted 0.0 single_particle_sort 3300023857 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.I17 DOE Joint Genome Institute (JGI) 3300023857 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 677666 723 1 0 0 0 SRX4524223 Unrestricted 0.0 single_particle_sort 3300018141 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_F15 DOE Joint Genome Institute (JGI) 3300018141 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 653584 615 0 0 0 0 SRX4647031 Unrestricted 0.0 single_particle_sort 3300050890 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_G8_SVS DOE Joint Genome Institute (JGI) 3300050890 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 21428 20 0 0 0 0 Restricted 0.0 single_particle_sort 3300041234 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.I18 DOE Joint Genome Institute (JGI) 3300041234 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 372500 423 0 0 0 0 SRX9523930 Unrestricted 0.0 single_particle_sort 3300036756 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.C22.redo DOE Joint Genome Institute (JGI) 3300036756 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 1274525 1452 0 0 0 0 SRX8910379 Unrestricted 0.0 single_particle_sort 3300019385 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent sediment, Guaymas Basin, Mexico - 6W_4868_13_30 DOE Joint Genome Institute (JGI) 3300019385 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.001 -110.5999 554588 667 0 0 0 0 SRX3974125 Unrestricted 0.0 single_particle_sort 3300061739 *Microbiome Permanent Draft Groundwater microbial communities from wells in Ash Sharqiyah North Governorate, Oman Sorted cell/s from groundwater from well in Ash Sharqiyah North Governorate, Oman - Uncultured microbe JGI_Spietz.NSHQ14.SYBR.04.H22 DOE Joint Genome Institute (JGI) 3300061739 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes rachel.spietz@montana.edu Rachel Spietz No Environmental Aquatic Groundwater Freshwater Unclassified groundwater 22.8661 58.7106 711212 813 1 0 1 0 Restricted 0.0 single_particle_sort 3300023456 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.E11 DOE Joint Genome Institute (JGI) 3300023456 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 391857 437 0 0 0 0 SRX4548724 Unrestricted 0.0 single_particle_sort 3300023595 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.N7 DOE Joint Genome Institute (JGI) 3300023595 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 661521 596 0 0 0 0 SRX4548006 Unrestricted 0.0 single_particle_sort 3300024820 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-G06 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024820 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 266786 312 0 0 0 0 0.0 single_particle_sort 3300019426 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16005 DOE Joint Genome Institute (JGI) 3300019426 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 2293875 2584 1 0 1 0 SRX3985611 Unrestricted 0.0 single_particle_sort 3300016175 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-L16 DOE Joint Genome Institute (JGI) 3300016175 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 656120 702 0 0 1 0 SRX3580238 Unrestricted 0.0 single_particle_sort 3300036085 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_I15 DOE Joint Genome Institute (JGI) 3300036085 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 27886 36 0 0 0 0 SRX10046421 Unrestricted 0.0 single_particle_sort 3300048732 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_A4_SVS DOE Joint Genome Institute (JGI) 3300048732 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 58006 65 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300034728 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P8_L7 DOE Joint Genome Institute (JGI) 3300034728 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 2792 2 0 0 0 0 SRX8136694 Unrestricted 0.0 single_particle_sort 3300032629 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.K11 DOE Joint Genome Institute (JGI) 3300032629 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 759696 684 1 0 1 0 SRX6452018 Unrestricted 0.0 single_particle_sort 3300026606 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-F14 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026606 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 58644 91 0 0 0 0 0.0 single_particle_sort 3300034588 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.D9 DOE Joint Genome Institute (JGI) 3300034588 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1495727 1569 1 0 1 0 SRX8394680 Unrestricted 0.0 single_particle_sort 3300024620 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-K08 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024620 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 45550 57 0 0 0 0 0.0 single_particle_sort 3300021680 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.L14 DOE Joint Genome Institute (JGI) 3300021680 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 223134 278 0 0 0 0 SRX4006462 Unrestricted 0.0 single_particle_sort 3300050833 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_G18_SVS DOE Joint Genome Institute (JGI) 3300050833 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 37119 60 0 0 0 0 Restricted 0.0 single_particle_sort 3300041362 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.H8 DOE Joint Genome Institute (JGI) 3300041362 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 838953 850 0 0 0 0 SRX9648147 Unrestricted 0.0 single_particle_sort 3300019660 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-M13 DOE Joint Genome Institute (JGI) 3300019660 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 176152 211 0 0 0 0 SRX3903189 Unrestricted 0.0 single_particle_sort 3300018296 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_E16 DOE Joint Genome Institute (JGI) 3300018296 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 1079574 1063 0 0 0 0 SRX4647021 Unrestricted 0.0 single_particle_sort 3300016075 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-274-N11 DOE Joint Genome Institute (JGI) 3300016075 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 491428 557 0 0 1 0 SRX3578296 Unrestricted 0.0 single_particle_sort 3300016221 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Parcubacteria bacterium SCGC_AG-278-E15 DOE Joint Genome Institute (JGI) 3300016221 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 373236 425 1 0 1 0 SRX3578358 Unrestricted 0.0 single_particle_sort 3300041653 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.I12 DOE Joint Genome Institute (JGI) 3300041653 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 732406 763 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300033924 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.C20 DOE Joint Genome Institute (JGI) 3300033924 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 76536 61 0 0 0 0 SRX7626820 Unrestricted 0.0 single_particle_sort 3300033707 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P2_D11 DOE Joint Genome Institute (JGI) 3300033707 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 3472 5 0 0 0 0 SRX7525382 Unrestricted 0.0 single_particle_sort 3300024635 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-E22 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024635 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 48739 70 0 0 0 0 0.0 single_particle_sort 3300019627 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-K10 DOE Joint Genome Institute (JGI) 3300019627 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 86244 106 0 0 1 0 SRX3549982 Unrestricted 0.0 single_particle_sort 3300037982 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.J14 DOE Joint Genome Institute (JGI) 3300037982 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 828947 983 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300050806 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_N7_SVS DOE Joint Genome Institute (JGI) 3300050806 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 41356 49 0 0 0 0 Restricted 0.0 single_particle_sort 3300023989 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.G18 DOE Joint Genome Institute (JGI) 3300023989 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1879743 2087 1 0 2 0 SRX4519603 Unrestricted 0.0 single_particle_sort 3300018258 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Ignavibacteria_bacterium_SCGC_AG-650-G21 DOE Joint Genome Institute (JGI) 3300018258 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 869539 803 1 0 1 0 SRX3981458 Unrestricted 0.0 single_particle_sort 3300024667 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-P13 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024667 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 71387 100 0 0 0 0 0.0 single_particle_sort 3300024835 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-N22 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024835 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 380184 474 0 0 0 0 0.0 single_particle_sort 3300032345 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.L11 DOE Joint Genome Institute (JGI) 3300032345 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 160985 173 1 0 1 0 SRX6433526 Unrestricted 0.0 single_particle_sort 3300019553 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-L04 DOE Joint Genome Institute (JGI) 3300019553 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 27796 42 0 0 0 0 SRX3560355 Unrestricted 0.0 single_particle_sort 3300035810 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_C14 DOE Joint Genome Institute (JGI) 3300035810 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 80859 109 0 0 0 0 SRX10045678 Unrestricted 0.0 single_particle_sort 3300015541 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-F22 DOE Joint Genome Institute (JGI) 3300015541 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 488739 555 0 0 0 0 SRX3560066 Unrestricted 0.0 single_particle_sort 3300023964 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.I16 DOE Joint Genome Institute (JGI) 3300023964 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1515927 1536 1 0 1 0 SRX4519564 Unrestricted 0.0 single_particle_sort 3300024613 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-C06 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024613 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 39872 52 0 0 0 0 0.0 single_particle_sort 3300051154 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_E7_SVS DOE Joint Genome Institute (JGI) 3300051154 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 60838 71 0 0 0 0 Restricted 0.0 single_particle_sort 3300015634 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from unchlorinated drinking water from Apeldoorn WTP, Netherlands - VDW.4.2014 0529 MDM2 VDW1 p4 pyro.H12.double-seq DOE Joint Genome Institute (JGI) 3300015634 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Drinking water Freshwater Unchlorinated Freshwater 52.2278 5.919 313449 407 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300024366 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.F14 DOE Joint Genome Institute (JGI) 3300024366 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 31425 39 0 0 0 0 SRX4547876 Unrestricted 0.0 single_particle_sort 3300024813 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-A23 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024813 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 203424 266 0 0 0 0 0.0 single_particle_sort 3300026615 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-L20 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026615 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 122537 154 0 0 0 0 0.0 single_particle_sort 3300015834 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-H10 DOE Joint Genome Institute (JGI) 3300015834 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 335644 333 0 0 0 0 SRX3560695 Unrestricted 0.0 single_particle_sort 3300034553 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.D19 DOE Joint Genome Institute (JGI) 3300034553 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1056416 1138 1 0 1 0 SRX8393333 Unrestricted 0.0 single_particle_sort 3300033301 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.G10 DOE Joint Genome Institute (JGI) 3300033301 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 246266 291 0 0 0 0 SRX7630582 Unrestricted 0.0 single_particle_sort 3300024768 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-A05 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024768 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 155754 193 0 0 0 0 0.0 single_particle_sort 3300038273 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.F10 DOE Joint Genome Institute (JGI) 3300038273 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 511982 610 0 0 0 0 SRX9411378 Unrestricted 0.0 single_particle_sort 3300010787 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_38_SCGC_AG-138-N08 DOE Joint Genome Institute (JGI) 3300010787 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 281330 391 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300010853 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Anoxic lake water microbial communities from Lake Kivu, Rwanda - MDM2.Kivu325.minimeta.H3 DOE Joint Genome Institute (JGI) 3300010853 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Unclassified Anoxic lake water -2.0288 29.1756 5326923 5614 2 0 2 0 Unrestricted 0.0 single_particle_sort 3300035823 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0813.Sybr.01.J16 DOE Joint Genome Institute (JGI) 3300035823 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 976581 1084 1 0 2 0 SRX8894175 Unrestricted 0.0 single_particle_sort 3300041381 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.C22 DOE Joint Genome Institute (JGI) 3300041381 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 3163451 3400 0 0 1 0 SRX9645390 Unrestricted 0.0 single_particle_sort 3300014404 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.N21 DOE Joint Genome Institute (JGI) 3300014404 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 467737 619 0 0 0 0 SRX3368217 Unrestricted 0.0 single_particle_sort 3300019588 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-M11 DOE Joint Genome Institute (JGI) 3300019588 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 51613 68 0 0 0 0 SRX3560810 Unrestricted 0.0 single_particle_sort 3300041245 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.N21 DOE Joint Genome Institute (JGI) 3300041245 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2714001 2645 1 0 1 0 SRX9651527 Unrestricted 0.0 single_particle_sort 3300038246 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.D16 DOE Joint Genome Institute (JGI) 3300038246 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 1079955 1270 1 0 1 0 SRX9411126 Unrestricted 0.0 single_particle_sort 3300033608 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_L10 DOE Joint Genome Institute (JGI) 3300033608 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 29154 32 0 0 0 0 SRX7528838 Unrestricted 0.0 single_particle_sort 3300018283 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_G13 DOE Joint Genome Institute (JGI) 3300018283 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 1077607 1063 0 0 0 0 SRX4646716 Unrestricted 0.0 single_particle_sort 3300023132 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.F11 DOE Joint Genome Institute (JGI) 3300023132 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 193334 278 0 0 0 0 SRX4506927 Unrestricted 0.0 single_particle_sort 3300050815 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_P13_SVS DOE Joint Genome Institute (JGI) 3300050815 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 29320 35 0 0 0 0 Restricted 0.0 single_particle_sort 3300037942 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.K5 DOE Joint Genome Institute (JGI) 3300037942 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 1204049 1102 0 0 0 0 SRX9410600 Unrestricted 0.0 single_particle_sort 3300035928 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.D18 DOE Joint Genome Institute (JGI) 3300035928 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 658248 724 0 0 0 0 SRX8862411 Unrestricted 0.0 single_particle_sort 3300014410 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.G04 DOE Joint Genome Institute (JGI) 3300014410 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 610009 698 0 0 0 0 SRX3368463 Unrestricted 0.0 single_particle_sort 3300019434 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16045 DOE Joint Genome Institute (JGI) 3300019434 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 2507140 2695 1 0 1 0 SRX3987256 Unrestricted 0.0 single_particle_sort 3300038059 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.L18 DOE Joint Genome Institute (JGI) 3300038059 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 642701 700 0 0 0 0 SRX9411383 Unrestricted 0.0 single_particle_sort 3300032385 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.G20 DOE Joint Genome Institute (JGI) 3300032385 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 167320 197 0 0 0 0 SRX6433529 Unrestricted 0.0 single_particle_sort 3300023659 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.F22 DOE Joint Genome Institute (JGI) 3300023659 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 507672 554 0 0 0 0 SRX4416323 Unrestricted 0.0 single_particle_sort 3300033903 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.L15 DOE Joint Genome Institute (JGI) 3300033903 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 224815 259 1 0 2 0 SRX7626532 Unrestricted 0.0 single_particle_sort 3300023949 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.E13 DOE Joint Genome Institute (JGI) 3300023949 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 1288559 1268 0 0 0 0 SRX4525509 Unrestricted 0.0 single_particle_sort 3300016325 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Omnitrophica bacterium SCGC_AG-278-N03 DOE Joint Genome Institute (JGI) 3300016325 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 839074 778 1 0 1 0 SRX3578420 Unrestricted 0.0 single_particle_sort 3300010848 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_7_SCGC_AG-159-D02 DOE Joint Genome Institute (JGI) 3300010848 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 1148181 1369 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023859 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.H6 DOE Joint Genome Institute (JGI) 3300023859 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 663446 735 1 0 1 0 SRX4523974 Unrestricted 0.0 single_particle_sort 3300033216 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.D16 DOE Joint Genome Institute (JGI) 3300033216 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 345204 416 0 0 0 0 SRX7629319 Unrestricted 0.0 single_particle_sort 3300015562 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-K08 DOE Joint Genome Institute (JGI) 3300015562 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 628005 702 0 0 0 0 SRX3549870 Unrestricted 0.0 single_particle_sort 3300021640 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.I7 DOE Joint Genome Institute (JGI) 3300021640 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 74574 85 0 0 0 0 SRX4009594 Unrestricted 0.0 single_particle_sort 3300071324 *Microbiome Permanent Draft Comparing whole genome amplification chemistries for bacterial single cell genomics Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - scBac_PTA_EnviBac_sc_plate3well3A_S9 Stanford University 3300071324 Metagenome - Single Particle Sort Spades v. 3.15.3 released per request -- IMGSUPP-4358 No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 1944797 1837 1 0 1 0 0.0 single_particle_sort 3300034548 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.D14 DOE Joint Genome Institute (JGI) 3300034548 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 776478 799 0 0 0 0 SRX8392456 Unrestricted 0.0 single_particle_sort 3300016330 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Omnitrophica bacterium SCGC_AG-574-D16 DOE Joint Genome Institute (JGI) 3300016330 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 755264 795 1 0 1 0 SRX3578826 Unrestricted 0.0 single_particle_sort 3300022644 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Sphingobacteriales bacterium JGI PCGPRD042217_17 DOE Joint Genome Institute (JGI) 3300022644 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 1896639 1928 1 0 2 0 SRX4414724 Unrestricted 0.0 single_particle_sort 3300033936 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.F11 DOE Joint Genome Institute (JGI) 3300033936 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 248832 305 0 0 0 0 SRX7626296 Unrestricted 0.0 single_particle_sort 3300022954 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.I18 DOE Joint Genome Institute (JGI) 3300022954 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 182961 211 0 0 1 0 SRX4419801 Unrestricted 0.0 single_particle_sort 3300015151 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - Microgenometes bacterium SCGC_AG-290-P17 DOE Joint Genome Institute (JGI) 3300015151 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 877786 1042 1 0 1 0 SRX3578796 Unrestricted 0.0 single_particle_sort 3300021840 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.F21 DOE Joint Genome Institute (JGI) 3300021840 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 3604253 3692 1 0 1 0 SRX3989631 Unrestricted 0.0 single_particle_sort 3300024109 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.N18 DOE Joint Genome Institute (JGI) 3300024109 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 2061066 2233 1 0 0 0 SRX4519579 Unrestricted 0.0 single_particle_sort 3300016532 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - Omnitrophica bacterium SCGC_AG-188-A08 DOE Joint Genome Institute (JGI) 3300016532 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 633040 666 0 0 0 0 SRX3577111 Unrestricted 0.0 single_particle_sort 3300033252 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.N15 DOE Joint Genome Institute (JGI) 3300033252 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 408949 470 1 0 1 0 SRX7630612 Unrestricted 0.0 single_particle_sort 3300041285 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.1.C4 DOE Joint Genome Institute (JGI) 3300041285 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1513407 1485 0 0 0 0 SRX9654845 Unrestricted 0.0 single_particle_sort 3300018243 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_M12 DOE Joint Genome Institute (JGI) 3300018243 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 682732 710 0 0 0 0 SRX4652747 Unrestricted 0.0 single_particle_sort 3300041341 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.F21 DOE Joint Genome Institute (JGI) 3300041341 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1927286 1830 1 0 1 0 SRX9646935 Unrestricted 0.0 single_particle_sort 3300016195 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-F17 DOE Joint Genome Institute (JGI) 3300016195 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 148350 175 0 0 0 0 SRX3562912 Unrestricted 0.0 single_particle_sort 3300019548 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-D14 DOE Joint Genome Institute (JGI) 3300019548 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 22066 37 0 0 0 0 SRX3560799 Unrestricted 0.0 single_particle_sort 3300015626 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from a deep sea mud volcano in Anaximander Mountains, Eastern Mediterranean Sea - B25.1.2014 1113 MDM2 B25 p1 16S.E16.double-peak DOE Joint Genome Institute (JGI) 3300015626 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Mud volcano Marine Unclassified Deep sea volcano 35.3338 30.2722 253281 306 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035804 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from geothermal spring sediment in Radiata Pool, Waikato, New Zealand - Uncultured microbe JGI_MDM2.NGM80.SYBR.02.B21 DOE Joint Genome Institute (JGI) 3300035804 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment -38.5341 176.1723 376264 499 1 0 1 0 SRX8861280 Unrestricted 0.0 single_particle_sort 3300016425 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown archaeum SCGC_AG-657-I19 DOE Joint Genome Institute (JGI) 3300016425 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 848600 1123 0 0 0 0 SRX3601352 Unrestricted 0.0 single_particle_sort 3300023575 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.G9 DOE Joint Genome Institute (JGI) 3300023575 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 92479 121 0 0 0 0 SRX4415641 Unrestricted 0.0 single_particle_sort 3300018276 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Acidobacteria_bacterium_SCGC_AG-650-E04 DOE Joint Genome Institute (JGI) 3300018276 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1069837 1013 0 0 0 0 SRX4815032 Unrestricted 0.0 single_particle_sort 3300016095 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-E14 DOE Joint Genome Institute (JGI) 3300016095 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 487387 573 0 0 0 0 SRX3563232 Unrestricted 0.0 single_particle_sort 3300041648 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.H20 DOE Joint Genome Institute (JGI) 3300041648 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2540547 2560 1 0 1 0 SRX14837979 Unrestricted 0.0 single_particle_sort 3300033205 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.L15 DOE Joint Genome Institute (JGI) 3300033205 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 1389439 1343 1 0 1 0 SRX7629302 Unrestricted 0.0 single_particle_sort 3300014423 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.J19 DOE Joint Genome Institute (JGI) 3300014423 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 770784 870 0 0 1 0 SRX3368439 Unrestricted 0.0 single_particle_sort 3300015460 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-N20 DOE Joint Genome Institute (JGI) 3300015460 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 123642 173 0 0 0 0 SRX3560453 Unrestricted 0.0 single_particle_sort 3300032485 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.L13 DOE Joint Genome Institute (JGI) 3300032485 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 591457 624 1 0 1 0 SRX6426346 Unrestricted 0.0 single_particle_sort 3300015826 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-G17 DOE Joint Genome Institute (JGI) 3300015826 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 273042 320 0 0 0 0 SRX3560687 Unrestricted 0.0 single_particle_sort 3300010747 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_14_SCGC_AG-138-G14 DOE Joint Genome Institute (JGI) 3300010747 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 178324 179 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015097 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-G19 DOE Joint Genome Institute (JGI) 3300015097 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 242191 290 0 0 0 0 SRX3578328 Unrestricted 0.0 single_particle_sort 3300015721 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-M17 DOE Joint Genome Institute (JGI) 3300015721 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 139706 175 0 0 1 0 SRX3560740 Unrestricted 0.0 single_particle_sort 3300022107 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.C9 DOE Joint Genome Institute (JGI) 3300022107 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1491470 1589 0 0 0 0 SRX3998135 Unrestricted 0.0 single_particle_sort 3300015581 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown archaeum SCGC_AG-122-B17 DOE Joint Genome Institute (JGI) 3300015581 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 976298 915 0 0 0 0 SRX3571927 Unrestricted 0.0 single_particle_sort 3300071194 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_edMDA_A05_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071194 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 656416 703 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300016430 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Omnitrophica bacterium SCGC_AG-278-B14 DOE Joint Genome Institute (JGI) 3300016430 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 1166800 1169 1 0 1 0 SRX3578349 Unrestricted 0.0 single_particle_sort 3300022007 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - Acetothermia bacterium JGI MDM2 NGM80-1-L08 DOE Joint Genome Institute (JGI) 3300022007 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 470084 547 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300050938 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-956-D23 DOE Joint Genome Institute (JGI) 3300050938 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1197303 -42.124435 1969890 1927 0 0 0 0 Restricted 0.0 single_particle_sort 3300015427 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-E07 DOE Joint Genome Institute (JGI) 3300015427 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 76421 95 0 0 0 0 SRX3560049 Unrestricted 0.0 single_particle_sort 3300016123 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-E07 DOE Joint Genome Institute (JGI) 3300016123 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 580259 625 0 0 0 0 SRX3577114 Unrestricted 0.0 single_particle_sort 3300021624 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.L9 DOE Joint Genome Institute (JGI) 3300021624 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 47351 63 0 0 0 0 SRX4009622 Unrestricted 0.0 single_particle_sort 3300024684 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-F21 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024684 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 81255 110 0 0 0 0 0.0 single_particle_sort 3300016493 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - unknown_bacterium_SCGC_AG-650-I05 DOE Joint Genome Institute (JGI) 3300016493 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 128905 157 0 0 0 0 SRX3784701 Unrestricted 0.0 single_particle_sort 3300022620 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Rhizobiales bacterium JGI PCGPRD042217_14 DOE Joint Genome Institute (JGI) 3300022620 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 518572 608 1 0 2 0 SRX4414719 Unrestricted 0.0 single_particle_sort 3300032588 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.N10 DOE Joint Genome Institute (JGI) 3300032588 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 644903 645 1 0 1 0 SRX6449958 Unrestricted 0.0 single_particle_sort 3300021824 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.K14 DOE Joint Genome Institute (JGI) 3300021824 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1010906 1191 1 0 1 0 SRX3989543 Unrestricted 0.0 single_particle_sort 3300024884 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.05.G16 DOE Joint Genome Institute (JGI) 3300024884 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 710816 822 0 0 0 0 SRX4391051 Unrestricted 0.0 single_particle_sort 3300016528 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-N05 DOE Joint Genome Institute (JGI) 3300016528 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 630945 615 0 0 0 0 SRX3784702 Unrestricted 0.0 single_particle_sort 3300016023 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-582-L02 DOE Joint Genome Institute (JGI) 3300016023 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 438194 495 0 0 0 0 SRX3580243 Unrestricted 0.0 single_particle_sort 3300019445 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent sediment, Guaymas Basin, Mexico - 6I_4867_11_01 DOE Joint Genome Institute (JGI) 3300019445 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.4667 -110.5332 7131952 8201 2 0 3 0 SRX3974061 Unrestricted 0.0 single_particle_sort 3300036034 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_F21 DOE Joint Genome Institute (JGI) 3300036034 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 32052 44 0 0 0 0 SRX10076513 Unrestricted 0.0 single_particle_sort 3300050870 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_C11_SVS DOE Joint Genome Institute (JGI) 3300050870 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 142245 214 0 0 0 0 Restricted 0.0 single_particle_sort 3300035932 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.F18 DOE Joint Genome Institute (JGI) 3300035932 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1148001 1233 0 0 0 0 SRX8862490 Unrestricted 0.0 single_particle_sort 3300010789 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_14_SCGC_AG-159-E06 DOE Joint Genome Institute (JGI) 3300010789 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 290926 398 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300018214 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Rhodospirillale_bacterium_SCGC_AG-650-O13 DOE Joint Genome Institute (JGI) 3300018214 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 564679 586 1 0 1 0 SRX3979789 Unrestricted 0.0 single_particle_sort 3300022635 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Sphingobacteriales bacterium JGI PCGPRD042217_15 DOE Joint Genome Institute (JGI) 3300022635 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 1017296 1139 0 0 0 0 SRX4414720 Unrestricted 0.0 single_particle_sort 3300035256 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_E20 DOE Joint Genome Institute (JGI) 3300035256 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 100556 143 0 0 0 0 SRX9537712 Unrestricted 0.0 single_particle_sort 3300016386 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-B14 DOE Joint Genome Institute (JGI) 3300016386 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 798344 920 0 0 0 0 SRX3539850 Unrestricted 0.0 single_particle_sort 3300018162 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_J9 DOE Joint Genome Institute (JGI) 3300018162 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 795011 824 0 0 0 0 SRX4647070 Unrestricted 0.0 single_particle_sort 3300051118 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_M4_SVS DOE Joint Genome Institute (JGI) 3300051118 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 73170 73 0 0 0 0 Restricted 0.0 single_particle_sort 3300016010 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-I08 DOE Joint Genome Institute (JGI) 3300016010 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 377147 478 0 0 0 0 SRX3562947 Unrestricted 0.0 single_particle_sort 3300032627 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.N18 DOE Joint Genome Institute (JGI) 3300032627 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 997043 1212 1 0 1 0 SRX6451975 Unrestricted 0.0 single_particle_sort 3300023378 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.J9 DOE Joint Genome Institute (JGI) 3300023378 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 608616 612 0 0 0 0 SRX4548974 Unrestricted 0.0 single_particle_sort 3300014395 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.N16 DOE Joint Genome Institute (JGI) 3300014395 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 320071 436 0 0 0 0 SRX3368435 Unrestricted 0.0 single_particle_sort 3300023871 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.C15 DOE Joint Genome Institute (JGI) 3300023871 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 647416 747 0 0 2 0 SRX4525899 Unrestricted 0.0 single_particle_sort 3300038071 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.F7 DOE Joint Genome Institute (JGI) 3300038071 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 35192 40 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300016110 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-M20 DOE Joint Genome Institute (JGI) 3300016110 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 511766 594 0 0 0 0 SRX3560788 Unrestricted 0.0 single_particle_sort 3300038230 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.E21 DOE Joint Genome Institute (JGI) 3300038230 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 232863 307 0 0 0 0 SRX9411077 Unrestricted 0.0 single_particle_sort 3300050922 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-G23 DOE Joint Genome Institute (JGI) 3300050922 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 816060 906 0 0 0 0 Restricted 0.0 single_particle_sort 3300016393 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Aminicenantes_bacterium_SCGC_AG-636-C18 DOE Joint Genome Institute (JGI) 3300016393 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 952213 952 0 0 0 0 SRX3784469 Unrestricted 0.0 single_particle_sort 3300049945 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_G21_SVS DOE Joint Genome Institute (JGI) 3300049945 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 59766 78 0 0 0 0 Restricted 0.0 single_particle_sort 3300010764 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_43_SCGC_AG-159-O10 DOE Joint Genome Institute (JGI) 3300010764 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 182411 247 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300018181 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_F9 DOE Joint Genome Institute (JGI) 3300018181 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 204884 221 0 0 0 0 SRX4652195 Unrestricted 0.0 single_particle_sort 3300022613 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States - Sphingomonadales bacterium JGI AMGPRD042217_7 DOE Joint Genome Institute (JGI) 3300022613 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 294633 352 1 0 1 0 SRX4411543 Unrestricted 0.0 single_particle_sort 3300032660 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.H8 DOE Joint Genome Institute (JGI) 3300032660 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 243374 264 0 0 0 0 SRX6431199 Unrestricted 0.0 single_particle_sort 3300019829 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-K16 DOE Joint Genome Institute (JGI) 3300019829 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 397792 427 0 0 0 0 SRX4663349 Unrestricted 0.0 single_particle_sort 3300035875 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.C10 DOE Joint Genome Institute (JGI) 3300035875 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 378702 413 0 0 0 0 SRX8857278 Unrestricted 0.0 single_particle_sort 3300022972 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - GAL08 bacterium JGI MDM2 DC4-3-B19 DOE Joint Genome Institute (JGI) 3300022972 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org; ruhl.ilona@gmail.com Ramunas Stepanauskas; Ilona Ruhl No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 703275 736 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300033709 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P4_O5 DOE Joint Genome Institute (JGI) 3300033709 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 2959 7 0 0 0 0 SRX7525386 Unrestricted 0.0 single_particle_sort 3300024869 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.J17 DOE Joint Genome Institute (JGI) 3300024869 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 36237 42 0 0 0 0 SRX4389719 Unrestricted 0.0 single_particle_sort 3300038225 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.C7 DOE Joint Genome Institute (JGI) 3300038225 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 83097 96 1 0 0 0 SRX9411059 Unrestricted 0.0 single_particle_sort 3300041226 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.E11 DOE Joint Genome Institute (JGI) 3300041226 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1195791 1202 0 0 0 0 SRX9653320 Unrestricted 0.0 single_particle_sort 3300023743 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.M20 DOE Joint Genome Institute (JGI) 3300023743 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 248171 290 0 0 0 0 SRX4501898 Unrestricted 0.0 single_particle_sort 3300019629 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_F14 DOE Joint Genome Institute (JGI) 3300019629 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 89906 103 0 0 0 0 SRX4647017 Unrestricted 0.0 single_particle_sort 3300015885 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-D17 DOE Joint Genome Institute (JGI) 3300015885 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 246292 289 0 0 1 0 SRX3542762 Unrestricted 0.0 single_particle_sort 3300024669 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-B07 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024669 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 63586 99 0 0 0 0 0.0 single_particle_sort 3300023776 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.05.L12 DOE Joint Genome Institute (JGI) 3300023776 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 240003 288 0 0 0 0 SRX4390962 Unrestricted 0.0 single_particle_sort 3300023987 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.K22 DOE Joint Genome Institute (JGI) 3300023987 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1857796 2001 0 0 0 0 SRX4522795 Unrestricted 0.0 single_particle_sort 3300015780 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-J05 DOE Joint Genome Institute (JGI) 3300015780 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 202463 237 0 0 0 0 SRX3560939 Unrestricted 0.0 single_particle_sort 3300041170 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.1.D10 DOE Joint Genome Institute (JGI) 3300041170 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 336504 406 0 0 0 0 SRX9654878 Unrestricted 0.0 single_particle_sort 3300016565 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_D6 DOE Joint Genome Institute (JGI) 3300016565 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1615396 1600 0 0 0 0 SRX4066062 Unrestricted 0.0 single_particle_sort 3300035770 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.E7 DOE Joint Genome Institute (JGI) 3300035770 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 303742 340 0 0 0 0 SRX8858030 Unrestricted 0.0 single_particle_sort 3300041231 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.G17 DOE Joint Genome Institute (JGI) 3300041231 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 970061 1046 0 0 1 0 SRX9523946 Unrestricted 0.0 single_particle_sort 3300016537 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Sorted cell/s from deep shales in West Virginia, USA - MahaSR_06_D3 DOE Joint Genome Institute (JGI) 3300016537 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back deep subsurface 39.6017 -79.9761 604558 730 0 0 0 0 SRX3577095 Unrestricted 0.0 single_particle_sort 3300018333 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_M22 DOE Joint Genome Institute (JGI) 3300018333 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 1437078 1382 1 0 1 0 SRX4646798 Unrestricted 0.0 single_particle_sort 3300033257 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.M22 DOE Joint Genome Institute (JGI) 3300033257 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 165991 200 0 0 0 0 SRX7630660 Unrestricted 0.0 single_particle_sort 3300015520 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-L11 DOE Joint Genome Institute (JGI) 3300015520 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 322585 422 0 0 0 0 SRX3550849 Unrestricted 0.0 single_particle_sort 3300018144 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_D12 DOE Joint Genome Institute (JGI) 3300018144 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 468061 510 0 0 0 0 SRX4648714 Unrestricted 0.0 single_particle_sort 3300015535 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-K10 DOE Joint Genome Institute (JGI) 3300015535 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 411210 512 0 0 0 0 SRX3560340 Unrestricted 0.0 single_particle_sort 3300037947 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.K22 DOE Joint Genome Institute (JGI) 3300037947 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 1227376 1312 0 0 0 0 SRX9410971 Unrestricted 0.0 single_particle_sort 3300071293 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_WGAX_C11_scBac_plate.C DOE Joint Genome Institute (JGI) 3300071293 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 503712 545 1 0 2 0 Unrestricted 0.0 single_particle_sort 3300019990 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-E16 DOE Joint Genome Institute (JGI) 3300019990 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 1118952 1142 0 0 1 0 SRX4654313 Unrestricted 0.0 single_particle_sort 3300018306 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-F04 DOE Joint Genome Institute (JGI) 3300018306 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1168402 1193 0 0 0 0 SRX3974513 Unrestricted 0.0 single_particle_sort 3300015567 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-K19 DOE Joint Genome Institute (JGI) 3300015567 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 611765 738 0 0 0 0 SRX3560348 Unrestricted 0.0 single_particle_sort 3300023419 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.F9 DOE Joint Genome Institute (JGI) 3300023419 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1346777 1461 1 0 1 0 SRX4520373 Unrestricted 0.0 single_particle_sort 3300033375 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.H8 DOE Joint Genome Institute (JGI) 3300033375 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 208387 242 0 0 0 0 SRX7627281 Unrestricted 0.0 single_particle_sort 3300071286 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_Wchmk_F09_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071286 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 705416 818 1 0 2 0 Unrestricted 0.0 single_particle_sort 3300022102 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.L13 DOE Joint Genome Institute (JGI) 3300022102 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1323781 1200 0 0 0 0 SRX3998404 Unrestricted 0.0 single_particle_sort 3300016001 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-D12 DOE Joint Genome Institute (JGI) 3300016001 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 388362 472 0 0 1 0 SRX3539853 Unrestricted 0.0 single_particle_sort 3300024641 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-K19 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024641 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 50710 78 0 0 0 0 0.0 single_particle_sort 3300022999 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - GAL15 bacterium JGI MDM2 DC4-3-C18 DOE Joint Genome Institute (JGI) 3300022999 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 1081660 1194 1 0 2 0 Unrestricted 0.0 single_particle_sort 3300032638 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.N10 DOE Joint Genome Institute (JGI) 3300032638 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 1096692 1092 1 0 1 0 SRX6426232 Unrestricted 0.0 single_particle_sort 3300034739 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.1.H9 DOE Joint Genome Institute (JGI) 3300034739 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 2787962 2797 1 0 1 0 SRX8390257 Unrestricted 0.0 single_particle_sort 3300015018 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.C11 DOE Joint Genome Institute (JGI) 3300015018 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 316634 391 1 0 0 0 Restricted 0.0 single_particle_sort 3300015513 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - TA06 bacterium JGI GBS_9_N20 DOE Joint Genome Institute (JGI) 3300015513 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Near-boiling (>90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 322752 403 0 0 0 0 SRX4062780 Unrestricted 0.0 single_particle_sort 3300050775 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_P6_SVS DOE Joint Genome Institute (JGI) 3300050775 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 107985 152 0 0 0 0 Restricted 0.0 single_particle_sort 3300022002 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - Acetothermia bacterium JGI MDM2 NGM80-2-L04 DOE Joint Genome Institute (JGI) 3300022002 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 483201 544 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015422 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Omnitrophica bacterium SCGC_AG-128-B13 DOE Joint Genome Institute (JGI) 3300015422 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 1294094 1352 0 0 0 0 SRX3574225 Unrestricted 0.0 single_particle_sort 3300015909 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-F15 DOE Joint Genome Institute (JGI) 3300015909 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 318046 363 0 0 0 0 SRX3563246 Unrestricted 0.0 single_particle_sort 3300015118 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Latescibacteria bacterium SCGC_AG-274-F04 DOE Joint Genome Institute (JGI) 3300015118 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 437000 469 1 0 1 0 SRX3578324 Unrestricted 0.0 single_particle_sort 3300024841 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-K18 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024841 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 85259 105 0 0 0 0 0.0 single_particle_sort 3300021734 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.D9 DOE Joint Genome Institute (JGI) 3300021734 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 592739 670 0 0 0 0 SRX4009942 Unrestricted 0.0 single_particle_sort 3300016101 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Microgenometes bacterium SCGC_AG-274-A15 DOE Joint Genome Institute (JGI) 3300016101 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 502932 577 1 0 1 0 SRX3578237 Unrestricted 0.0 single_particle_sort 3300038094 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .J19 DOE Joint Genome Institute (JGI) 3300038094 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 351965 503 0 0 0 0 SRX9411565 Unrestricted 0.0 single_particle_sort 3300024746 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-P17 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024746 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 129102 168 0 0 0 0 0.0 single_particle_sort 3300023319 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.M9 DOE Joint Genome Institute (JGI) 3300023319 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 288204 301 0 0 0 0 SRX4549223 Unrestricted 0.0 single_particle_sort 3300018406 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_D19 DOE Joint Genome Institute (JGI) 3300018406 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 2799991 2576 0 0 0 0 SRX4647032 Unrestricted 0.0 single_particle_sort 3300010742 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_28_CGC_AG-159-K02 DOE Joint Genome Institute (JGI) 3300010742 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 149675 160 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300038194 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.I6 DOE Joint Genome Institute (JGI) 3300038194 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 1209634 1336 1 0 1 0 SRX9411813 Unrestricted 0.0 single_particle_sort 3300038268 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.05.I18 DOE Joint Genome Institute (JGI) 3300038268 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 451406 526 0 0 1 0 SRX9411224 Unrestricted 0.0 single_particle_sort 3300024773 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-B09 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024773 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 166277 205 0 0 0 0 0.0 single_particle_sort 3300018315 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_I4 DOE Joint Genome Institute (JGI) 3300018315 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1233150 1258 1 0 1 0 SRX4652805 Unrestricted 0.0 single_particle_sort 3300023894 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.F14 DOE Joint Genome Institute (JGI) 3300023894 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 813813 882 1 0 1 0 SRX4524004 Unrestricted 0.0 single_particle_sort 3300016240 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-E10 DOE Joint Genome Institute (JGI) 3300016240 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 436260 541 0 0 0 0 SRX3562888 Unrestricted 0.0 single_particle_sort 3300018135 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-B23 DOE Joint Genome Institute (JGI) 3300018135 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 445708 411 0 0 0 0 SRX3974438 Unrestricted 0.0 single_particle_sort 3300016368 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-E22 DOE Joint Genome Institute (JGI) 3300016368 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 752467 868 0 0 1 0 SRX3550885 Unrestricted 0.0 single_particle_sort 3300035937 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.M13 DOE Joint Genome Institute (JGI) 3300035937 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 998882 1099 1 0 1 0 SRX8862507 Unrestricted 0.0 single_particle_sort 3300014401 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.C13 DOE Joint Genome Institute (JGI) 3300014401 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 519500 549 0 0 0 0 SRX3368449 Unrestricted 0.0 single_particle_sort 3300041384 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.N5 DOE Joint Genome Institute (JGI) 3300041384 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 3545436 3258 0 0 1 0 SRX9645418 Unrestricted 0.0 single_particle_sort 3300023139 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.K14 DOE Joint Genome Institute (JGI) 3300023139 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 764279 918 0 0 0 0 SRX4509037 Unrestricted 0.0 single_particle_sort 3300018167 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_J10 DOE Joint Genome Institute (JGI) 3300018167 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 750354 812 0 0 1 0 SRX4647591 Unrestricted 0.0 single_particle_sort 3300015736 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-J12 DOE Joint Genome Institute (JGI) 3300015736 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 69226 87 0 0 0 0 SRX3561051 Unrestricted 0.0 single_particle_sort 3300035965 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.J17 DOE Joint Genome Institute (JGI) 3300035965 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 2107048 2142 1 0 1 0 SRX8862703 Unrestricted 0.0 single_particle_sort 3300033304 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.I7 DOE Joint Genome Institute (JGI) 3300033304 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 433605 499 0 0 0 0 SRX7627213 Unrestricted 0.0 single_particle_sort 3300013083 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.I10 DOE Joint Genome Institute (JGI) 3300013083 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 962249 1132 1 0 1 0 SRX3367204 Unrestricted 0.0 single_particle_sort 3300037964 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.I8 DOE Joint Genome Institute (JGI) 3300037964 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 108207 140 0 0 0 0 SRX9411492 Unrestricted 0.0 single_particle_sort 3300019915 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-M4 DOE Joint Genome Institute (JGI) 3300019915 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 645594 722 1 0 1 0 SRX4663365 Unrestricted 0.0 single_particle_sort 3300015831 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-F17 DOE Joint Genome Institute (JGI) 3300015831 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 294095 327 0 0 0 0 SRX3560683 Unrestricted 0.0 single_particle_sort 3300033578 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_L15 DOE Joint Genome Institute (JGI) 3300033578 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 11167 16 0 0 0 0 SRX7528830 Unrestricted 0.0 single_particle_sort 3300051151 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_P19_SVS DOE Joint Genome Institute (JGI) 3300051151 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 19965 29 0 0 0 0 Restricted 0.0 single_particle_sort 3300015703 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-N16 DOE Joint Genome Institute (JGI) 3300015703 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 111088 140 0 0 0 0 SRX3560793 Unrestricted 0.0 single_particle_sort 3300032566 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.G19 DOE Joint Genome Institute (JGI) 3300032566 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 1006341 1064 0 0 0 0 SRX6451717 Unrestricted 0.0 single_particle_sort 3300015631 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Jinze hot spring sediment, Tengchong, China - JNZ.1.2014 1216 MDM2 JNZ p1 16S.N5.double-peak DOE Joint Genome Institute (JGI) 3300015631 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 25.4413 98.46 310001 384 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023961 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.E18 DOE Joint Genome Institute (JGI) 3300023961 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 1457681 1467 1 0 1 0 SRX4505243 Unrestricted 0.0 single_particle_sort 3300018120 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-M20 DOE Joint Genome Institute (JGI) 3300018120 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 388322 382 0 0 0 0 SRX3974847 Unrestricted 0.0 single_particle_sort 3300015544 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown archaeum SCGC_AG-122-E14 DOE Joint Genome Institute (JGI) 3300015544 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 513095 585 0 0 0 0 SRX3573042 Unrestricted 0.0 single_particle_sort 3300022977 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - S2R-29 bacterium JGI MDM2 DC4-3-B4 DOE Joint Genome Institute (JGI) 3300022977 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 458585 541 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300021745 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.F13 DOE Joint Genome Institute (JGI) 3300021745 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 720540 775 0 0 0 0 SRX4009960 Unrestricted 0.0 single_particle_sort 3300035263 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_E7 DOE Joint Genome Institute (JGI) 3300035263 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 145424 176 0 0 0 0 SRX9537874 Unrestricted 0.0 single_particle_sort 3300026576 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-E23 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026576 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 33299 40 0 0 0 0 0.0 single_particle_sort 3300071230 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_WGAX_F12_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071230 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 560666 549 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300050960 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_E16_SVS DOE Joint Genome Institute (JGI) 3300050960 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 24829 34 0 0 0 0 Restricted 0.0 single_particle_sort 3300033921 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.J19 DOE Joint Genome Institute (JGI) 3300033921 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 256107 309 0 0 0 0 SRX7626827 Unrestricted 0.0 single_particle_sort 3300023982 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.L11 DOE Joint Genome Institute (JGI) 3300023982 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 1948461 1923 1 0 1 0 SRX4549583 Unrestricted 0.0 single_particle_sort 3300037989 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.I16 DOE Joint Genome Institute (JGI) 3300037989 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 262663 345 0 0 0 0 SRX9411372 Unrestricted 0.0 single_particle_sort 3300016468 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Aminicenantes_bacterium_SCGC_AG-636-O20 DOE Joint Genome Institute (JGI) 3300016468 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 1562799 1492 1 0 1 0 SRX3784479 Unrestricted 0.0 single_particle_sort 3300016224 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-574-L15 DOE Joint Genome Institute (JGI) 3300016224 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 374323 437 1 0 1 0 SRX3579048 Unrestricted 0.0 single_particle_sort 3300032622 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.K22 DOE Joint Genome Institute (JGI) 3300032622 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 722993 802 1 0 1 0 SRX6426245 Unrestricted 0.0 single_particle_sort 3300048739 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_E6_SVS DOE Joint Genome Institute (JGI) 3300048739 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 350076 408 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300018390 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_E19 DOE Joint Genome Institute (JGI) 3300018390 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 2336663 2189 1 0 1 0 SRX4648711 Unrestricted 0.0 single_particle_sort 3300019906 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-N14 DOE Joint Genome Institute (JGI) 3300019906 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 368635 418 1 0 1 0 SRX4663478 Unrestricted 0.0 single_particle_sort 3300018113 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_H13 DOE Joint Genome Institute (JGI) 3300018113 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 190255 253 1 0 1 0 SRX4647020 Unrestricted 0.0 single_particle_sort 3300071225 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_WGAX_C11_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071225 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 794696 936 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300041369 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.H20 DOE Joint Genome Institute (JGI) 3300041369 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 294725 297 1 0 1 0 SRX9648558 Unrestricted 0.0 single_particle_sort 3300050927 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-J18 DOE Joint Genome Institute (JGI) 3300050927 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 1471654 1534 1 0 1 0 Restricted 0.0 single_particle_sort 3300015438 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-K09 DOE Joint Genome Institute (JGI) 3300015438 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 100816 126 0 0 0 0 SRX3560349 Unrestricted 0.0 single_particle_sort 3300018196 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_H12 DOE Joint Genome Institute (JGI) 3300018196 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 448198 471 0 0 0 0 SRX4652800 Unrestricted 0.0 single_particle_sort 3300033440 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.F13 DOE Joint Genome Institute (JGI) 3300033440 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 231266 268 0 0 0 0 SRX7630357 Unrestricted 0.0 single_particle_sort 3300041314 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.C12 DOE Joint Genome Institute (JGI) 3300041314 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 323131 307 0 0 0 0 SRX9646791 Unrestricted 0.0 single_particle_sort 3300016275 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Omnitrophica bacterium SCGC_AG-574-N07 DOE Joint Genome Institute (JGI) 3300016275 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 756571 702 1 0 1 0 SRX3579772 Unrestricted 0.0 single_particle_sort 3300018096 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_J14 DOE Joint Genome Institute (JGI) 3300018096 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 138178 149 0 0 0 0 SRX4646898 Unrestricted 0.0 single_particle_sort 3300015795 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-J19 DOE Joint Genome Institute (JGI) 3300015795 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 217007 251 0 0 0 0 SRX3563840 Unrestricted 0.0 single_particle_sort 3300023347 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.G22 DOE Joint Genome Institute (JGI) 3300023347 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1096575 1212 0 0 0 0 SRX4520594 Unrestricted 0.0 single_particle_sort 3300019599 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_B18 DOE Joint Genome Institute (JGI) 3300019599 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 68935 74 0 0 0 0 SRX4646959 Unrestricted 0.0 single_particle_sort 3300071274 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_Wchmk_A09_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071274 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 735555 865 0 0 2 0 Unrestricted 0.0 single_particle_sort 3300018158 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_H18 DOE Joint Genome Institute (JGI) 3300018158 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 726010 771 1 0 1 0 SRX4646618 Unrestricted 0.0 single_particle_sort 3300022122 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.C14 DOE Joint Genome Institute (JGI) 3300022122 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 2267191 2243 0 0 1 0 SRX3998110 Unrestricted 0.0 single_particle_sort 3300019985 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-D4 DOE Joint Genome Institute (JGI) 3300019985 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 716974 800 1 0 1 0 SRX4653825 Unrestricted 0.0 single_particle_sort 3300016021 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-C22 DOE Joint Genome Institute (JGI) 3300016021 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 425523 493 0 0 1 0 SRX3563195 Unrestricted 0.0 single_particle_sort 3300016491 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-I22 DOE Joint Genome Institute (JGI) 3300016491 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 110770 146 0 0 0 0 SRX3785641 Unrestricted 0.0 single_particle_sort 3300015929 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-274-D10 DOE Joint Genome Institute (JGI) 3300015929 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 305915 382 1 0 1 0 SRX3578251 Unrestricted 0.0 single_particle_sort 3300022022 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - TA06 bacterium JGI MDM2 NGM80-2-E21 DOE Joint Genome Institute (JGI) 3300022022 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 712043 773 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015402 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - unknown archaeum SCGC_AG-128-G23 DOE Joint Genome Institute (JGI) 3300015402 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 754481 836 0 0 0 0 SRX3576743 Unrestricted 0.0 single_particle_sort 3300016121 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-B11 DOE Joint Genome Institute (JGI) 3300016121 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 493041 623 0 0 0 0 SRX3539836 Unrestricted 0.0 single_particle_sort 3300033839 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.G21 DOE Joint Genome Institute (JGI) 3300033839 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 779908 861 0 0 0 0 SRX7630464 Unrestricted 0.0 single_particle_sort 3300023447 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.K5 DOE Joint Genome Institute (JGI) 3300023447 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 44977 53 0 0 0 0 SRX4548453 Unrestricted 0.0 single_particle_sort 3300013035 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - DC4.5.2015 0309 DC4 p5 16S.J12.double-seq DOE Joint Genome Institute (JGI) 3300013035 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 511601 657 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300036747 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.D17.redo DOE Joint Genome Institute (JGI) 3300036747 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 1626954 1491 1 0 1 0 SRX8910266 Unrestricted 0.0 single_particle_sort 3300018326 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Syntrophaceae_bacterium_SCGC_AG-650-O08 DOE Joint Genome Institute (JGI) 3300018326 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1281408 1312 1 0 1 0 SRX3976993 Unrestricted 0.0 single_particle_sort 3300023741 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.K17 DOE Joint Genome Institute (JGI) 3300023741 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 76994 108 0 0 0 0 SRX4548260 Unrestricted 0.0 single_particle_sort 3300023998 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.I22 DOE Joint Genome Institute (JGI) 3300023998 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 2131823 2284 1 0 1 0 SRX4549245 Unrestricted 0.0 single_particle_sort 3300023912 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.L22 DOE Joint Genome Institute (JGI) 3300023912 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 933663 1010 1 0 1 0 SRX4521835 Unrestricted 0.0 single_particle_sort 3300014975 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.G15 DOE Joint Genome Institute (JGI) 3300014975 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 183545 248 1 0 1 0 Restricted 0.0 single_particle_sort 3300033340 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.C4 DOE Joint Genome Institute (JGI) 3300033340 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 360549 428 1 0 1 0 SRX7630478 Unrestricted 0.0 single_particle_sort 3300015455 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-M16 DOE Joint Genome Institute (JGI) 3300015455 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 136412 164 0 0 0 0 SRX3549919 Unrestricted 0.0 single_particle_sort 3300037919 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.C19 DOE Joint Genome Institute (JGI) 3300037919 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 389660 448 1 0 0 0 SRX9410363 Unrestricted 0.0 single_particle_sort 3300022611 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Caulobacterales bacterium JGI PCGPRD042217_28 DOE Joint Genome Institute (JGI) 3300022611 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 224153 272 1 0 0 0 SRX4415246 Unrestricted 0.0 single_particle_sort 3300023846 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.L14 DOE Joint Genome Institute (JGI) 3300023846 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 591946 650 0 0 0 0 SRX4549592 Unrestricted 0.0 single_particle_sort 3300038073 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.K16 DOE Joint Genome Institute (JGI) 3300038073 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 46700 68 0 0 0 0 SRX9411482 Unrestricted 0.0 single_particle_sort 3300018183 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - archaeum_unknown_SCGC_AG-650-D02 DOE Joint Genome Institute (JGI) 3300018183 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 420248 452 0 0 1 0 SRX3978134 Unrestricted 0.0 single_particle_sort 3300051066 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_H18_SVS DOE Joint Genome Institute (JGI) 3300051066 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 33195 39 0 0 0 0 Restricted 0.0 single_particle_sort 3300016391 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-L18 DOE Joint Genome Institute (JGI) 3300016391 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 911822 942 0 0 1 0 SRX3578198 Unrestricted 0.0 single_particle_sort 3300041145 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.I15 DOE Joint Genome Institute (JGI) 3300041145 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1743624 1662 1 0 1 0 SRX9654200 Unrestricted 0.0 single_particle_sort 3300038146 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.J18 DOE Joint Genome Institute (JGI) 3300038146 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 407471 558 0 0 0 0 SRX9411801 Unrestricted 0.0 single_particle_sort 3300023956 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.L19 DOE Joint Genome Institute (JGI) 3300023956 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 1122562 1375 1 0 2 0 SRX4501384 Unrestricted 0.0 single_particle_sort 3300023873 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.F11 DOE Joint Genome Institute (JGI) 3300023873 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 725622 749 0 0 0 0 SRX4519604 Unrestricted 0.0 single_particle_sort 3300023646 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.G17 DOE Joint Genome Institute (JGI) 3300023646 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 195973 216 0 0 0 0 SRX4415637 Unrestricted 0.0 single_particle_sort 3300038046 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.F19 DOE Joint Genome Institute (JGI) 3300038046 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 549062 721 0 0 0 0 SRX9411267 Unrestricted 0.0 single_particle_sort 3300016612 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Aminicenantes_bacterium_SCGC_AG-636-B03 DOE Joint Genome Institute (JGI) 3300016612 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 2521267 2431 1 0 1 0 SRX3784419 Unrestricted 0.0 single_particle_sort 3300015500 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-F20 DOE Joint Genome Institute (JGI) 3300015500 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 283326 327 0 0 0 0 SRX3549925 Unrestricted 0.0 single_particle_sort 3300035745 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.J6 DOE Joint Genome Institute (JGI) 3300035745 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 852242 912 1 0 1 0 SRX8857530 Unrestricted 0.0 single_particle_sort 3300015710 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-3-G06 DOE Joint Genome Institute (JGI) 3300015710 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 122441 164 0 0 0 0 SRX3553124 Unrestricted 0.0 single_particle_sort 3300015558 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-E09 DOE Joint Genome Institute (JGI) 3300015558 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 653557 686 0 0 1 0 SRX3549449 Unrestricted 0.0 single_particle_sort 3300032602 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.G6 DOE Joint Genome Institute (JGI) 3300032602 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 320745 372 1 0 1 0 SRX6431009 Unrestricted 0.0 single_particle_sort 3300071205 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_C03_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071205 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 2030673 2286 3 0 1 0 Unrestricted 0.0 single_particle_sort 3300022138 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.H13 DOE Joint Genome Institute (JGI) 3300022138 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 3721005 3703 1 0 1 0 SRX3998127 Unrestricted 0.0 single_particle_sort 3300010778 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_5_SCGC_AG-138-C14 DOE Joint Genome Institute (JGI) 3300010778 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 325193 337 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023364 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.L19 DOE Joint Genome Institute (JGI) 3300023364 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 2114794 2014 1 0 1 0 SRX4548836 Unrestricted 0.0 single_particle_sort 3300019577 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_F18 DOE Joint Genome Institute (JGI) 3300019577 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 44910 58 0 0 0 0 SRX4646900 Unrestricted 0.0 single_particle_sort 3300015153 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - Omnitrophica bacterium SCGC_AG-290-C17 DOE Joint Genome Institute (JGI) 3300015153 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 1712617 1393 1 0 1 0 SRX3578547 Unrestricted 0.0 single_particle_sort 3300022038 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Atribacteria bacterium JGI MDM2 LBsed72-2-H15 DOE Joint Genome Institute (JGI) 3300022038 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment freshwater sediment 53.7598 107.9791 816602 890 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300050907 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-A13 DOE Joint Genome Institute (JGI) 3300050907 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 939085 1017 0 0 0 0 Restricted 0.0 single_particle_sort 3300033268 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.L15 DOE Joint Genome Institute (JGI) 3300033268 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 196590 240 0 0 0 0 SRX7630611 Unrestricted 0.0 single_particle_sort 3300033424 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.C4 DOE Joint Genome Institute (JGI) 3300033424 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 790886 859 0 0 0 0 SRX7630271 Unrestricted 0.0 single_particle_sort 3300024372 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.J12 DOE Joint Genome Institute (JGI) 3300024372 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 81448 108 0 0 0 0 SRX4547867 Unrestricted 0.0 single_particle_sort 3300021770 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.I9 DOE Joint Genome Institute (JGI) 3300021770 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 903972 866 0 0 1 0 SRX4005439 Unrestricted 0.0 single_particle_sort 3300033194 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.D14 DOE Joint Genome Institute (JGI) 3300033194 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 330871 372 0 0 0 0 SRX7628981 Unrestricted 0.0 single_particle_sort 3300033901 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.F15 DOE Joint Genome Institute (JGI) 3300033901 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 606861 691 0 0 0 0 SRX7626527 Unrestricted 0.0 single_particle_sort 3300026584 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-D16 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026584 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 52624 64 0 0 0 0 0.0 single_particle_sort 3300016204 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-C09 DOE Joint Genome Institute (JGI) 3300016204 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 223701 286 0 0 0 0 SRX3562820 Unrestricted 0.0 single_particle_sort 3300071216 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_G05_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071216 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 3573940 3878 3 0 1 0 Unrestricted 0.0 single_particle_sort 3300038257 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.05.K9 DOE Joint Genome Institute (JGI) 3300038257 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 34796 46 0 0 0 0 SRX9411191 Unrestricted 0.0 single_particle_sort 3300015583 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - Cesiribacter bacterium JGI ML_1_M20 DOE Joint Genome Institute (JGI) 3300015583 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 38.008 -119.086 925370 967 0 0 0 0 SRX4062783 Unrestricted 0.0 single_particle_sort 3300023464 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.F11 DOE Joint Genome Institute (JGI) 3300023464 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 874462 988 1 0 1 0 SRX4548437 Unrestricted 0.0 single_particle_sort 3300015723 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-3-B18 DOE Joint Genome Institute (JGI) 3300015723 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 145899 178 0 0 0 0 SRX3551359 Unrestricted 0.0 single_particle_sort 3300018100 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_H13 DOE Joint Genome Institute (JGI) 3300018100 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 152059 184 0 0 0 0 SRX4646804 Unrestricted 0.0 single_particle_sort 3300071252 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_D05_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071252 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 2594070 2514 2 0 3 0 Unrestricted 0.0 single_particle_sort 3300035734 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.H22 DOE Joint Genome Institute (JGI) 3300035734 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 2237779 2280 1 0 1 0 SRX8857419 Unrestricted 0.0 single_particle_sort 3300014421 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.D16 DOE Joint Genome Institute (JGI) 3300014421 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 815531 847 1 0 1 0 SRX3298916 Unrestricted 0.0 single_particle_sort 3300032655 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.K22 DOE Joint Genome Institute (JGI) 3300032655 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 137046 167 1 0 1 0 SRX6431695 Unrestricted 0.0 single_particle_sort 3300041376 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.K21 DOE Joint Genome Institute (JGI) 3300041376 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 588805 548 1 0 1 0 SRX9649231 Unrestricted 0.0 single_particle_sort 3300041134 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.I16 DOE Joint Genome Institute (JGI) 3300041134 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1248290 1337 1 0 1 0 SRX9669997 Unrestricted 0.0 single_particle_sort 3300018241 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - archaeum_unknown_SCGC_AG-650-A15 DOE Joint Genome Institute (JGI) 3300018241 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 681414 713 1 0 1 0 SRX3978136 Unrestricted 0.0 single_particle_sort 3300033324 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.E10 DOE Joint Genome Institute (JGI) 3300033324 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 634496 716 1 0 1 0 SRX7627673 Unrestricted 0.0 single_particle_sort 3300018385 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_N4 DOE Joint Genome Institute (JGI) 3300018385 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 2140657 2093 0 0 0 0 SRX4650360 Unrestricted 0.0 single_particle_sort 3300041343 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.L9 DOE Joint Genome Institute (JGI) 3300041343 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1661370 1560 1 0 1 0 SRX9646933 Unrestricted 0.0 single_particle_sort 3300024614 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-E16 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024614 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 46411 56 0 0 0 0 0.0 single_particle_sort 3300024399 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Pseudomonas bacterium JGI PFNR15_J18 DOE Joint Genome Institute (JGI) 3300024399 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 376883 410 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300023963 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.N11 DOE Joint Genome Institute (JGI) 3300023963 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 1536353 1476 1 0 1 0 SRX4524487 Unrestricted 0.0 single_particle_sort 3300022127 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.E20 DOE Joint Genome Institute (JGI) 3300022127 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 3415285 3361 1 0 1 0 SRX3998136 Unrestricted 0.0 single_particle_sort 3300016550 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Lentisphaerae_bacterium_SCGC_AG-650-C22 DOE Joint Genome Institute (JGI) 3300016550 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1159186 1104 1 0 1 0 SRX3785634 Unrestricted 0.0 single_particle_sort 3300015633 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Jinze hot spring sediment, Tengchong, China - JNZ.1.2014 1216 MDM2 JNZ p1 16S.H4.double-seq DOE Joint Genome Institute (JGI) 3300015633 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 25.4413 98.46 406134 393 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015272 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown archaeum SCGC_AG-122-E08 DOE Joint Genome Institute (JGI) 3300015272 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 422429 545 0 0 0 0 SRX3572001 Unrestricted 0.0 single_particle_sort 3300015701 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-M19 DOE Joint Genome Institute (JGI) 3300015701 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 90162 126 0 0 1 0 SRX3563019 Unrestricted 0.0 single_particle_sort 3300051153 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_B11_SVS DOE Joint Genome Institute (JGI) 3300051153 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 72260 86 0 0 0 0 Restricted 0.0 single_particle_sort 3300033230 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.J15 DOE Joint Genome Institute (JGI) 3300033230 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 995756 901 0 0 0 0 SRX7629297 Unrestricted 0.0 single_particle_sort 3300024814 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-J13 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024814 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 213926 275 0 0 0 0 0.0 single_particle_sort 3300022948 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.J6 DOE Joint Genome Institute (JGI) 3300022948 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 31689 37 0 0 0 0 SRX4454608 Unrestricted 0.0 single_particle_sort 3300014436 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.F14 DOE Joint Genome Institute (JGI) 3300014436 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 884769 1000 0 0 0 0 SRX3368438 Unrestricted 0.0 single_particle_sort 3300024759 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-J11 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024759 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 139257 177 0 0 0 0 0.0 single_particle_sort 3300016352 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-B09 DOE Joint Genome Institute (JGI) 3300016352 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 877552 844 0 0 0 0 SRX3580160 Unrestricted 0.0 single_particle_sort 3300034554 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.D21 DOE Joint Genome Institute (JGI) 3300034554 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 827017 898 1 0 1 0 SRX8393327 Unrestricted 0.0 single_particle_sort 3300013081 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.F08 DOE Joint Genome Institute (JGI) 3300013081 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 683894 742 1 0 1 0 SRX3366861 Unrestricted 0.0 single_particle_sort 3300015833 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-B13 DOE Joint Genome Institute (JGI) 3300015833 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 293790 330 1 0 0 0 SRX3563052 Unrestricted 0.0 single_particle_sort 3300022027 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - TA06 bacterium JGI MDM2 NGM80-2-I05 DOE Joint Genome Institute (JGI) 3300022027 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 716272 767 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015407 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - unknown archaeum SCGC_AG-128-N15 DOE Joint Genome Institute (JGI) 3300015407 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 818742 912 1 0 1 0 SRX3577081 Unrestricted 0.0 single_particle_sort 3300038274 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.E10 DOE Joint Genome Institute (JGI) 3300038274 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 164935 207 0 0 0 0 SRX9411380 Unrestricted 0.0 single_particle_sort 3300035824 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0813.Sybr.01.J5 DOE Joint Genome Institute (JGI) 3300035824 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 1199577 1324 1 0 1 0 SRX8894176 Unrestricted 0.0 single_particle_sort 3300016405 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG-582-B08 DOE Joint Genome Institute (JGI) 3300016405 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 934288 1037 1 0 1 0 SRX3579939 Unrestricted 0.0 single_particle_sort 3300010719 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.04.L12 DOE Joint Genome Institute (JGI) 3300010719 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 52806 52 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300018284 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_I12 DOE Joint Genome Institute (JGI) 3300018284 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 1111454 1014 1 0 1 0 SRX4646764 Unrestricted 0.0 single_particle_sort 3300023342 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.L6 DOE Joint Genome Institute (JGI) 3300023342 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 804809 913 1 0 1 0 SRX4519653 Unrestricted 0.0 single_particle_sort 3300050177 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_F11_SVS DOE Joint Genome Institute (JGI) 3300050177 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 31824 33 0 0 0 0 Restricted 0.0 single_particle_sort 3300014403 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.F19 DOE Joint Genome Institute (JGI) 3300014403 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 457175 589 0 0 1 0 SRX3368362 Unrestricted 0.0 single_particle_sort 3300033225 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.C18 DOE Joint Genome Institute (JGI) 3300033225 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 321111 366 0 0 0 0 SRX7630255 Unrestricted 0.0 single_particle_sort 3300015806 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-J06 DOE Joint Genome Institute (JGI) 3300015806 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 218430 277 0 0 0 0 SRX3560723 Unrestricted 0.0 single_particle_sort 3300033910 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.N16 DOE Joint Genome Institute (JGI) 3300033910 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 201807 236 0 0 0 0 SRX7626535 Unrestricted 0.0 single_particle_sort 3300016316 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-D22 DOE Joint Genome Institute (JGI) 3300016316 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 627797 771 0 0 1 0 SRX3539854 Unrestricted 0.0 single_particle_sort 3300018011 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_N4 DOE Joint Genome Institute (JGI) 3300018011 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 1219884 1230 0 0 0 0 SRX4647501 Unrestricted 0.0 single_particle_sort 3300016452 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-P21 DOE Joint Genome Institute (JGI) 3300016452 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 1431489 1400 0 0 1 0 SRX3578233 Unrestricted 0.0 single_particle_sort 3300016080 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-I12 DOE Joint Genome Institute (JGI) 3300016080 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 520287 559 1 0 0 0 SRX3562946 Unrestricted 0.0 single_particle_sort 3300014336 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.G10 DOE Joint Genome Institute (JGI) 3300014336 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1070089 1316 0 0 0 0 SRX3298992 Unrestricted 0.0 single_particle_sort 3300018269 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - archaeum_unknown_SCGC_AG-650-P22 DOE Joint Genome Institute (JGI) 3300018269 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 875689 996 1 0 1 0 SRX3980738 Unrestricted 0.0 single_particle_sort 3300021675 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.D14 DOE Joint Genome Institute (JGI) 3300021675 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 215831 270 0 0 0 0 SRX4009961 Unrestricted 0.0 single_particle_sort 3300016180 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-O20 DOE Joint Genome Institute (JGI) 3300016180 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 685570 710 0 0 0 0 SRX3578225 Unrestricted 0.0 single_particle_sort 3300050834 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_G20_SVS DOE Joint Genome Institute (JGI) 3300050834 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 105335 153 0 0 0 0 Restricted 0.0 single_particle_sort 3300017614 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-188-J15 DOE Joint Genome Institute (JGI) 3300017614 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 413424 467 0 0 1 0 SRX3578193 Unrestricted 0.0 single_particle_sort 3300018111 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_I22 DOE Joint Genome Institute (JGI) 3300018111 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 170368 234 0 0 0 0 SRX4646766 Unrestricted 0.0 single_particle_sort 3300041290 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.1.D6 DOE Joint Genome Institute (JGI) 3300041290 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 258154 333 1 0 0 0 SRX9654852 Unrestricted 0.0 single_particle_sort 3300036070 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_N8 DOE Joint Genome Institute (JGI) 3300036070 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 43991 62 0 0 0 0 SRX10046091 Unrestricted 0.0 single_particle_sort 3300016416 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown archaeum SCGC_AG-278-I14 DOE Joint Genome Institute (JGI) 3300016416 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 901874 1098 1 0 1 0 SRX3578386 Unrestricted 0.0 single_particle_sort 3300036742 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.F14.redo DOE Joint Genome Institute (JGI) 3300036742 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 700154 822 0 0 0 0 SRX8909155 Unrestricted 0.0 single_particle_sort 3300035908 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.J18 DOE Joint Genome Institute (JGI) 3300035908 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 440296 441 1 0 0 0 SRX8900261 Unrestricted 0.0 single_particle_sort 3300041654 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.F17 DOE Joint Genome Institute (JGI) 3300041654 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 313750 483 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033923 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.L19 DOE Joint Genome Institute (JGI) 3300033923 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 165043 206 0 0 0 0 SRX7626828 Unrestricted 0.0 single_particle_sort 3300016305 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-E20 DOE Joint Genome Institute (JGI) 3300016305 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 598393 756 0 0 0 0 SRX3562892 Unrestricted 0.0 single_particle_sort 3300015815 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-N10 DOE Joint Genome Institute (JGI) 3300015815 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 268235 302 0 0 0 0 SRX3560790 Unrestricted 0.0 single_particle_sort 3300035261 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_C5 DOE Joint Genome Institute (JGI) 3300035261 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 32764 37 1 0 0 0 SRX9537813 Unrestricted 0.0 single_particle_sort 3300019554 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-C04 DOE Joint Genome Institute (JGI) 3300019554 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 26614 41 0 0 0 0 SRX3550864 Unrestricted 0.0 single_particle_sort 3300023917 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.05.G14 DOE Joint Genome Institute (JGI) 3300023917 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 1027877 1034 0 0 0 0 SRX4391000 Unrestricted 0.0 single_particle_sort 3300023524 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.G15 DOE Joint Genome Institute (JGI) 3300023524 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 512005 591 0 0 0 0 SRX4548527 Unrestricted 0.0 single_particle_sort 3300014480 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.K11 DOE Joint Genome Institute (JGI) 3300014480 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1559786 1818 0 0 1 0 SRX3366666 Unrestricted 0.0 single_particle_sort 3300019809 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-I5 DOE Joint Genome Institute (JGI) 3300019809 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 391331 464 1 0 1 0 SRX4663279 Unrestricted 0.0 single_particle_sort 3300038205 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.C20 DOE Joint Genome Institute (JGI) 3300038205 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 646157 831 0 0 0 0 SRX9411029 Unrestricted 0.0 single_particle_sort 3300041206 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.D20 DOE Joint Genome Institute (JGI) 3300041206 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2257341 2322 0 0 0 0 SRX9657221 Unrestricted 0.0 single_particle_sort 3300035840 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0815.Sybr.01.M10 DOE Joint Genome Institute (JGI) 3300035840 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 1096938 1225 0 0 0 0 SRX8894642 Unrestricted 0.0 single_particle_sort 3300024377 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Pseudomonas bacterium JGI PFNR15_C21 DOE Joint Genome Institute (JGI) 3300024377 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 100746 145 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300071291 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_WGAX_E10_scBac_plate.C DOE Joint Genome Institute (JGI) 3300071291 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 411529 390 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033589 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P2_K7 DOE Joint Genome Institute (JGI) 3300033589 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 23455 39 0 0 0 0 SRX7525300 Unrestricted 0.0 single_particle_sort 3300034470 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.F18 DOE Joint Genome Institute (JGI) 3300034470 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 459370 527 0 0 0 0 SRX8389565 Unrestricted 0.0 single_particle_sort 3300019609 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown bacterium SCGC_AG-657-L02 DOE Joint Genome Institute (JGI) 3300019609 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 65306 84 0 0 0 0 SRX3903471 Unrestricted 0.0 single_particle_sort 3300033286 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.F14 DOE Joint Genome Institute (JGI) 3300033286 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 218369 242 0 0 0 0 SRX7630604 Unrestricted 0.0 single_particle_sort 3300023784 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.G16 DOE Joint Genome Institute (JGI) 3300023784 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 278407 329 1 0 1 0 SRX4524776 Unrestricted 0.0 single_particle_sort 3300035950 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.J13 DOE Joint Genome Institute (JGI) 3300035950 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1307818 1421 0 0 0 0 SRX8862683 Unrestricted 0.0 single_particle_sort 3300041233 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.N14 DOE Joint Genome Institute (JGI) 3300041233 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 874171 984 0 0 0 0 SRX9664855 Unrestricted 0.0 single_particle_sort 3300018331 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Chlorobiales_bacterium_SCGC_AG-650-G13 DOE Joint Genome Institute (JGI) 3300018331 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1516471 1365 1 0 1 0 SRX3981257 Unrestricted 0.0 single_particle_sort 3300050902 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_J2_SVS DOE Joint Genome Institute (JGI) 3300050902 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 89821 137 0 0 0 0 Restricted 0.0 single_particle_sort 3300049970 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_M17_SVS DOE Joint Genome Institute (JGI) 3300049970 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 102125 165 0 0 0 0 Restricted 0.0 single_particle_sort 3300019572 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-I22 DOE Joint Genome Institute (JGI) 3300019572 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 38380 55 0 0 0 0 SRX3560696 Unrestricted 0.0 single_particle_sort 3300041215 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.C11 DOE Joint Genome Institute (JGI) 3300041215 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1158555 1185 0 0 0 0 SRX9652641 Unrestricted 0.0 single_particle_sort 3300024771 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-D13 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024771 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 171761 198 0 0 0 0 0.0 single_particle_sort 3300038216 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.C19 DOE Joint Genome Institute (JGI) 3300038216 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 438364 505 0 0 1 0 SRX9411056 Unrestricted 0.0 single_particle_sort 3300016136 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-H11 DOE Joint Genome Institute (JGI) 3300016136 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 560768 643 1 0 1 0 SRX3563370 Unrestricted 0.0 single_particle_sort 3300050845 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_J11_SVS DOE Joint Genome Institute (JGI) 3300050845 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 65299 107 0 0 0 0 Restricted 0.0 single_particle_sort 3300071257 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_Wchmk_C10_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071257 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 879519 1039 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300024477 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.N11 DOE Joint Genome Institute (JGI) 3300024477 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 210653 231 0 0 0 0 SRX4547865 Unrestricted 0.0 single_particle_sort 3300016036 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Thaumarchaeota archaeum SCGC_AG-657-L04 DOE Joint Genome Institute (JGI) 3300016036 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 406026 517 0 0 0 0 SRX3601679 Unrestricted 0.0 single_particle_sort 3300037893 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .I6 DOE Joint Genome Institute (JGI) 3300037893 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 589257 755 1 0 1 0 SRX9411527 Unrestricted 0.0 single_particle_sort 3300014380 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.J07 DOE Joint Genome Institute (JGI) 3300014380 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 105058 156 0 0 0 0 SRX3368331 Unrestricted 0.0 single_particle_sort 3300016374 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Parcubacteria bacterium SCGC_AG-278-G17 DOE Joint Genome Institute (JGI) 3300016374 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 771576 876 1 0 0 0 SRX3578380 Unrestricted 0.0 single_particle_sort 3300034572 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.I19 DOE Joint Genome Institute (JGI) 3300034572 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 597915 647 1 0 1 0 SRX8393466 Unrestricted 0.0 single_particle_sort 3300050955 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-956-O14 DOE Joint Genome Institute (JGI) 3300050955 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1197303 -42.124435 1236476 1392 1 0 1 0 Restricted 0.0 single_particle_sort 3300024843 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-O14 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024843 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 166676 185 0 0 0 0 0.0 single_particle_sort 3300024676 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-O08 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024676 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 78800 108 0 0 0 0 0.0 single_particle_sort 3300015890 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Gemmatamonidetes bacterium SCGC_AG-582-O11 DOE Joint Genome Institute (JGI) 3300015890 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 258887 301 1 0 0 0 SRX3580055 Unrestricted 0.0 single_particle_sort 3300016103 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-I10 DOE Joint Genome Institute (JGI) 3300016103 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 450929 581 0 0 0 0 SRX3562942 Unrestricted 0.0 single_particle_sort 3300038252 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.I8 DOE Joint Genome Institute (JGI) 3300038252 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 432889 559 0 0 0 0 SRX9411163 Unrestricted 0.0 single_particle_sort 3300023769 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.N6 DOE Joint Genome Institute (JGI) 3300023769 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 192445 237 0 0 0 0 SRX4548264 Unrestricted 0.0 single_particle_sort 3300033293 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.M5 DOE Joint Genome Institute (JGI) 3300033293 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 308069 343 0 0 0 0 SRX7630487 Unrestricted 0.0 single_particle_sort 3300024643 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-D03 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024643 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 57368 83 0 0 0 0 0.0 single_particle_sort 3300016508 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - AC1_bacterium_SCGC_AG-650-B04 DOE Joint Genome Institute (JGI) 3300016508 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 414271 416 0 0 0 0 SRX3784695 Unrestricted 0.0 single_particle_sort 3300024876 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR46.Redo.05.H16 DOE Joint Genome Institute (JGI) 3300024876 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.242 21.4899 120067 158 0 0 0 0 SRX4391264 Unrestricted 0.0 single_particle_sort 3300016003 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Microgenometes bacterium SCGC_AG-274-G08 DOE Joint Genome Institute (JGI) 3300016003 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 427868 473 1 0 0 0 SRX3578252 Unrestricted 0.0 single_particle_sort 3300015511 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-N04 DOE Joint Genome Institute (JGI) 3300015511 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 321555 395 0 0 0 0 SRX3560448 Unrestricted 0.0 single_particle_sort 3300034609 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.C21 DOE Joint Genome Institute (JGI) 3300034609 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1138306 1214 1 0 1 0 SRX8394778 Unrestricted 0.0 single_particle_sort 3300021804 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.I4 DOE Joint Genome Institute (JGI) 3300021804 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 678979 674 0 0 0 0 SRX3989912 Unrestricted 0.0 single_particle_sort 3300037978 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.E11 DOE Joint Genome Institute (JGI) 3300037978 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 849126 1084 0 0 0 0 SRX9410980 Unrestricted 0.0 single_particle_sort 3300033211 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.G19 DOE Joint Genome Institute (JGI) 3300033211 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 379320 422 0 0 0 0 SRX7630261 Unrestricted 0.0 single_particle_sort 3300015012 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.E9 DOE Joint Genome Institute (JGI) 3300015012 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 273743 374 0 0 0 0 Restricted 0.0 single_particle_sort 3300048729 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 159_K2_SVS DOE Joint Genome Institute (JGI) 3300048729 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 60836 87 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015098 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-E14 DOE Joint Genome Institute (JGI) 3300015098 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 245776 295 0 0 0 0 SRX3578319 Unrestricted 0.0 single_particle_sort 3300032632 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.N16 DOE Joint Genome Institute (JGI) 3300032632 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 267561 314 1 0 1 0 SRX6431736 Unrestricted 0.0 single_particle_sort 3300015593 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-I20 DOE Joint Genome Institute (JGI) 3300015593 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 1119721 1288 0 0 0 0 SRX3560322 Unrestricted 0.0 single_particle_sort 3300050965 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_I8_SVS DOE Joint Genome Institute (JGI) 3300050965 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 54356 67 0 0 0 0 Restricted 0.0 single_particle_sort 3300071235 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_WGAX_C10_scBac_plate.C DOE Joint Genome Institute (JGI) 3300071235 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 1648636 1622 1 0 2 0 Unrestricted 0.0 single_particle_sort 3300022108 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.E8 DOE Joint Genome Institute (JGI) 3300022108 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1537841 1559 1 0 1 0 SRX3997956 Unrestricted 0.0 single_particle_sort 3300015112 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-J19 DOE Joint Genome Institute (JGI) 3300015112 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 346307 421 0 0 0 0 SRX3578332 Unrestricted 0.0 single_particle_sort 3300015428 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-J12 DOE Joint Genome Institute (JGI) 3300015428 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 71248 99 0 0 0 0 SRX3560331 Unrestricted 0.0 single_particle_sort 3300050937 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-956-D10 DOE Joint Genome Institute (JGI) 3300050937 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1197303 -42.124435 435664 465 0 0 0 0 Restricted 0.0 single_particle_sort 3300022008 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - Acetothermia bacterium JGI MDM2 NGM80-2-H12 DOE Joint Genome Institute (JGI) 3300022008 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 510639 591 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300071267 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_Wchmk_B08_scBac_plate.C DOE Joint Genome Institute (JGI) 3300071267 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 1090682 1120 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300021740 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.L12 DOE Joint Genome Institute (JGI) 3300021740 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 527600 601 0 0 0 0 SRX4009655 Unrestricted 0.0 single_particle_sort 3300023399 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.K20 DOE Joint Genome Institute (JGI) 3300023399 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 497997 517 1 0 1 0 SRX4548792 Unrestricted 0.0 single_particle_sort 3300019547 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-D04 DOE Joint Genome Institute (JGI) 3300019547 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 25702 37 0 0 0 0 SRX3561040 Unrestricted 0.0 single_particle_sort 3300023614 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.G11 DOE Joint Genome Institute (JGI) 3300023614 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 823215 923 0 0 1 0 SRX4415395 Unrestricted 0.0 single_particle_sort 3300038014 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.F8 DOE Joint Genome Institute (JGI) 3300038014 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 716762 915 0 0 1 0 SRX9410328 Unrestricted 0.0 single_particle_sort 3300019923 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-M16 DOE Joint Genome Institute (JGI) 3300019923 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 1113557 1164 2 0 1 0 SRX4663367 Unrestricted 0.0 single_particle_sort 3300041647 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.N21 DOE Joint Genome Institute (JGI) 3300041647 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1335263 1441 0 0 0 0 SRX14837976 Unrestricted 0.0 single_particle_sort 3300033931 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.L18 DOE Joint Genome Institute (JGI) 3300033931 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 941729 1052 1 0 1 0 SRX7630412 Unrestricted 0.0 single_particle_sort 3300071220 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_Wchmk_H09_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071220 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 837326 841 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023759 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.D13 DOE Joint Genome Institute (JGI) 3300023759 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 167268 208 0 0 0 0 SRX4548023 Unrestricted 0.0 single_particle_sort 3300038262 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.05.J11 DOE Joint Genome Institute (JGI) 3300038262 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 89139 96 0 0 0 0 SRX9411218 Unrestricted 0.0 single_particle_sort 3300018395 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Syntrophaceae_bacterium_SCGC_AG-650-L17 DOE Joint Genome Institute (JGI) 3300018395 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 2395938 2291 1 0 1 0 SRX3981814 Unrestricted 0.0 single_particle_sort 3300023814 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.I18 DOE Joint Genome Institute (JGI) 3300023814 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 421722 500 1 0 1 0 SRX4525232 Unrestricted 0.0 single_particle_sort 3300016234 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Parcubacteria bacterium SCGC_AG-278-M15 DOE Joint Genome Institute (JGI) 3300016234 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 397004 486 1 0 1 0 SRX3578391 Unrestricted 0.0 single_particle_sort 3300038114 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .D7 DOE Joint Genome Institute (JGI) 3300038114 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 36685 41 0 0 0 0 SRX9411655 Unrestricted 0.0 single_particle_sort 3300010748 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_6_SCGC_AG-159-B19 DOE Joint Genome Institute (JGI) 3300010748 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 159818 180 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300015821 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-G05 DOE Joint Genome Institute (JGI) 3300015821 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 256304 310 0 0 0 0 SRX3551326 Unrestricted 0.0 single_particle_sort 3300034547 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.G14 DOE Joint Genome Institute (JGI) 3300034547 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 699637 741 0 0 0 0 SRX8392462 Unrestricted 0.0 single_particle_sort 3300018271 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_F14 DOE Joint Genome Institute (JGI) 3300018271 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 1050096 962 1 0 1 0 SRX4646799 Unrestricted 0.0 single_particle_sort 3300035960 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.C19 DOE Joint Genome Institute (JGI) 3300035960 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 820626 886 1 0 1 0 SRX8862691 Unrestricted 0.0 single_particle_sort 3300013303 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.H10 DOE Joint Genome Institute (JGI) 3300013303 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1542136 1819 1 0 1 0 SRX3364214 Unrestricted 0.0 single_particle_sort 3300041373 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.E14 DOE Joint Genome Institute (JGI) 3300041373 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 704047 691 0 0 0 0 SRX9648547 Unrestricted 0.0 single_particle_sort 3300015621 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from unchlorinated drinking water from Apeldoorn WTP, Netherlands - VDW.4.2014 0529 MDM2 VDW1 p4 pyro.C14.double-peak DOE Joint Genome Institute (JGI) 3300015621 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Drinking water Freshwater Unchlorinated Freshwater 52.2278 5.919 153593 208 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300018130 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-O03 DOE Joint Genome Institute (JGI) 3300018130 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 336050 369 1 0 1 0 SRX3974890 Unrestricted 0.0 single_particle_sort 3300041346 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.H6 DOE Joint Genome Institute (JGI) 3300041346 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2995210 2682 1 0 0 0 SRX9646939 Unrestricted 0.0 single_particle_sort 3300035927 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.E22 DOE Joint Genome Institute (JGI) 3300035927 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 633277 707 1 0 1 0 SRX8862403 Unrestricted 0.0 single_particle_sort 3300018125 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-B08 DOE Joint Genome Institute (JGI) 3300018125 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 444630 408 0 0 1 0 SRX3974433 Unrestricted 0.0 single_particle_sort 3300071213 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_B05_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071213 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 3501701 3501 3 0 1 0 Unrestricted 0.0 single_particle_sort 3300033184 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.F20 DOE Joint Genome Institute (JGI) 3300033184 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 863417 808 1 0 0 0 SRX7630262 Unrestricted 0.0 single_particle_sort 3300015586 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown bacterium SCGC_AG-122-G19 DOE Joint Genome Institute (JGI) 3300015586 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 945543 980 0 0 0 0 SRX3573068 Unrestricted 0.0 single_particle_sort 3300015726 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-M04 DOE Joint Genome Institute (JGI) 3300015726 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 139877 181 0 0 0 0 SRX3563935 Unrestricted 0.0 single_particle_sort 3300041104 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.K5 DOE Joint Genome Institute (JGI) 3300041104 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 804806 807 0 0 0 0 SRX9654414 Unrestricted 0.0 single_particle_sort 3300035279 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_J10 DOE Joint Genome Institute (JGI) 3300035279 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 24345 42 0 0 0 0 SRX9539393 Unrestricted 0.0 single_particle_sort 3300010847 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_37_SCGC_AG-138-M23 DOE Joint Genome Institute (JGI) 3300010847 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 942184 1126 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300023129 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.G17 DOE Joint Genome Institute (JGI) 3300023129 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 225976 224 0 0 1 0 SRX4507961 Unrestricted 0.0 single_particle_sort 3300019910 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-M5 DOE Joint Genome Institute (JGI) 3300019910 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 423848 515 0 0 0 0 SRX4663369 Unrestricted 0.0 single_particle_sort 3300026594 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-I15 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026594 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 43880 62 0 0 0 0 0.0 single_particle_sort 3300050770 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_O4_SVS DOE Joint Genome Institute (JGI) 3300050770 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 48474 72 0 0 0 0 Restricted 0.0 single_particle_sort 3300016462 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Aminicenantes_bacterium_SCGC_AG-636-P22 DOE Joint Genome Institute (JGI) 3300016462 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Sediment Freshwater Unclassified Freshwater sediment 53.7598 107.9791 7.32 1557839 1451 1 0 1 0 SRX3784480 Unrestricted 0.0 single_particle_sort 3300071244 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_edMDA_G09_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071244 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 328453 404 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023988 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.K13 DOE Joint Genome Institute (JGI) 3300023988 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1884330 2056 1 0 1 0 SRX4519349 Unrestricted 0.0 single_particle_sort 3300018259 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-C09 DOE Joint Genome Institute (JGI) 3300018259 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 865227 806 0 0 0 0 SRX3978442 Unrestricted 0.0 single_particle_sort 3300016245 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-574-I02 DOE Joint Genome Institute (JGI) 3300016245 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 509372 582 1 0 0 0 SRX3578855 Unrestricted 0.0 single_particle_sort 3300051117 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_M18_SVS DOE Joint Genome Institute (JGI) 3300051117 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 101692 118 0 0 0 0 Restricted 0.0 single_particle_sort 3300018310 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Chlorobiales_bacterium_SCGC_AG-650-A18 DOE Joint Genome Institute (JGI) 3300018310 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1414342 1253 1 0 1 0 SRX3974898 Unrestricted 0.0 single_particle_sort 3300016381 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-E12 DOE Joint Genome Institute (JGI) 3300016381 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 828562 902 0 0 0 0 SRX3560677 Unrestricted 0.0 single_particle_sort 3300018193 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-K07 DOE Joint Genome Institute (JGI) 3300018193 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 499103 460 0 0 0 0 SRX3981249 Unrestricted 0.0 single_particle_sort 3300023377 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.N20 DOE Joint Genome Institute (JGI) 3300023377 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1344043 1458 1 0 1 0 SRX4519745 Unrestricted 0.0 single_particle_sort 3300032628 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.M11 DOE Joint Genome Institute (JGI) 3300032628 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 412438 412 1 0 1 0 SRX6452139 Unrestricted 0.0 single_particle_sort 3300034729 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P9_A13 DOE Joint Genome Institute (JGI) 3300034729 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 4214 6 0 0 0 0 SRX8136692 Unrestricted 0.0 single_particle_sort 3300019564 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_F17 DOE Joint Genome Institute (JGI) 3300019564 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 30161 48 0 0 0 0 SRX4652193 Unrestricted 0.0 single_particle_sort 3300018093 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - uncultured microorganism JGI MDM2 ZSSED05-1-D8 DOE Joint Genome Institute (JGI) 3300018093 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 105477 124 0 0 0 0 SRX3916441 Unrestricted 0.0 single_particle_sort 3300015432 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-H06 DOE Joint Genome Institute (JGI) 3300015432 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 86269 113 0 0 0 0 SRX3549747 Unrestricted 0.0 single_particle_sort 3300033470 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.K10 DOE Joint Genome Institute (JGI) 3300033470 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 514817 542 1 0 1 0 SRX7630351 Unrestricted 0.0 single_particle_sort 3300024784 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-C16 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024784 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 161555 219 0 0 0 0 0.0 single_particle_sort 3300021724 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.J12 DOE Joint Genome Institute (JGI) 3300021724 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 414744 515 0 0 0 0 SRX4005540 Unrestricted 0.0 single_particle_sort 3300015525 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-H05 DOE Joint Genome Institute (JGI) 3300015525 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 342830 445 1 0 1 0 SRX3549744 Unrestricted 0.0 single_particle_sort 3300023843 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.G17 DOE Joint Genome Institute (JGI) 3300023843 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 569257 644 1 0 2 0 SRX4524489 Unrestricted 0.0 single_particle_sort 3300038076 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.H15 DOE Joint Genome Institute (JGI) 3300038076 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 79237 97 0 0 0 0 SRX9411484 Unrestricted 0.0 single_particle_sort 3300038143 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.K19 DOE Joint Genome Institute (JGI) 3300038143 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 111876 129 0 0 0 0 SRX9411800 Unrestricted 0.0 single_particle_sort 3300034564 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.D18 DOE Joint Genome Institute (JGI) 3300034564 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 553738 571 0 0 0 0 SRX8393460 Unrestricted 0.0 single_particle_sort 3300035775 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.F20 DOE Joint Genome Institute (JGI) 3300035775 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 540323 595 1 0 0 0 SRX8858102 Unrestricted 0.0 single_particle_sort 3300018186 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-K18 DOE Joint Genome Institute (JGI) 3300018186 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 395364 349 0 0 0 0 SRX4815276 Unrestricted 0.0 single_particle_sort 3300016362 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Aminicenantes_bacterium_SCGC_AG-636-P04 DOE Joint Genome Institute (JGI) 3300016362 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 848868 857 1 0 1 0 SRX3784581 Unrestricted 0.0 single_particle_sort 3300023953 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.M14 DOE Joint Genome Institute (JGI) 3300023953 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 1280140 1314 1 0 1 0 SRX4549804 Unrestricted 0.0 single_particle_sort 3300033609 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_M23 DOE Joint Genome Institute (JGI) 3300033609 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 54652 71 0 0 0 0 SRX7528824 Unrestricted 0.0 single_particle_sort 3300023643 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.J22 DOE Joint Genome Institute (JGI) 3300023643 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 134422 155 0 0 0 0 SRX4547985 Unrestricted 0.0 single_particle_sort 3300019589 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-E20 DOE Joint Genome Institute (JGI) 3300019589 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 48617 69 0 0 0 0 SRX3560813 Unrestricted 0.0 single_particle_sort 3300023876 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.N4 DOE Joint Genome Institute (JGI) 3300023876 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 675523 774 1 0 0 0 SRX4549801 Unrestricted 0.0 single_particle_sort 3300038043 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.05.G12 DOE Joint Genome Institute (JGI) 3300038043 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 271731 295 1 0 1 0 SRX9411269 Unrestricted 0.0 single_particle_sort 3300016560 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from underground thermal water from 5P borehole, Tomsk, Russia - Ignavibacteria_SCGC_AG-717-N13 DOE Joint Genome Institute (JGI) 3300016560 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole Groundwater 58.0758 82.8374 7.49-7.6 1553789 1412 1 0 1 0 SRX3783255 Unrestricted 0.0 single_particle_sort 3300041175 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.I8 DOE Joint Genome Institute (JGI) 3300041175 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1612849 1729 1 0 1 0 SRX9660859 Unrestricted 0.0 single_particle_sort 3300015785 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-3-D16 DOE Joint Genome Institute (JGI) 3300015785 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 202866 245 0 0 0 0 SRX3551357 Unrestricted 0.0 single_particle_sort 3300038176 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.E12 DOE Joint Genome Institute (JGI) 3300038176 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 898835 1082 1 0 1 0 SRX9411796 Unrestricted 0.0 single_particle_sort 3300023771 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.J17 DOE Joint Genome Institute (JGI) 3300023771 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 226381 248 0 0 0 0 SRX4549612 Unrestricted 0.0 single_particle_sort 3300033370 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.I10 DOE Joint Genome Institute (JGI) 3300033370 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 299135 277 0 0 0 0 SRX7630590 Unrestricted 0.0 single_particle_sort 3300032587 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.I10 DOE Joint Genome Institute (JGI) 3300032587 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 2025095 1691 1 0 1 0 SRX6451710 Unrestricted 0.0 single_particle_sort 3300018323 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_L4 DOE Joint Genome Institute (JGI) 3300018323 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1257509 1304 0 0 0 0 SRX4650610 Unrestricted 0.0 single_particle_sort 3300041221 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.N14 DOE Joint Genome Institute (JGI) 3300041221 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2235295 2280 0 0 0 0 SRX9652973 Unrestricted 0.0 single_particle_sort 3300016527 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-E16 DOE Joint Genome Institute (JGI) 3300016527 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 592469 599 1 0 1 0 SRX3784747 Unrestricted 0.0 single_particle_sort 3300023477 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.H5 DOE Joint Genome Institute (JGI) 3300023477 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 1738395 1656 1 0 1 0 SRX4548443 Unrestricted 0.0 single_particle_sort 3300015530 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-K06 DOE Joint Genome Institute (JGI) 3300015530 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 405003 469 1 0 1 0 SRX3549871 Unrestricted 0.0 single_particle_sort 3300016481 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Omnitrophica bacterium SCGC_AG-278-I18 DOE Joint Genome Institute (JGI) 3300016481 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 1718412 1573 0 0 1 0 SRX3578385 Unrestricted 0.0 single_particle_sort 3300036619 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.E12 DOE Joint Genome Institute (JGI) 3300036619 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 635173 721 0 0 1 0 SRX8902814 Unrestricted 0.0 single_particle_sort 3300049940 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_F13_SVS DOE Joint Genome Institute (JGI) 3300049940 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 92419 146 0 0 0 0 Restricted 0.0 single_particle_sort 3300041236 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.D13 DOE Joint Genome Institute (JGI) 3300041236 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 971183 1019 1 0 1 0 SRX9523937 Unrestricted 0.0 single_particle_sort 3300038235 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.J4 DOE Joint Genome Institute (JGI) 3300038235 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 84346 115 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300019542 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-J04 DOE Joint Genome Institute (JGI) 3300019542 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 22485 32 0 0 0 0 SRX3561061 Unrestricted 0.0 single_particle_sort 3300016115 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-J08 DOE Joint Genome Institute (JGI) 3300016115 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 528235 603 0 0 0 0 SRX3563000 Unrestricted 0.0 single_particle_sort 3300019639 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-M08 DOE Joint Genome Institute (JGI) 3300019639 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 99031 119 0 0 0 0 SRX3959699 Unrestricted 0.0 single_particle_sort 3300014390 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.I20 DOE Joint Genome Institute (JGI) 3300014390 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 282658 393 0 0 0 0 SRX3368330 Unrestricted 0.0 single_particle_sort 3300036754 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.G21.redo DOE Joint Genome Institute (JGI) 3300036754 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 685340 692 1 0 0 0 SRX8910366 Unrestricted 0.0 single_particle_sort 3300023454 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.M7 DOE Joint Genome Institute (JGI) 3300023454 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 329637 360 0 0 0 0 SRX4548573 Unrestricted 0.0 single_particle_sort 3300016015 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-B19 DOE Joint Genome Institute (JGI) 3300016015 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 359027 486 0 0 1 0 SRX3542761 Unrestricted 0.0 single_particle_sort 3300041642 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.L22 DOE Joint Genome Institute (JGI) 3300041642 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 480965 524 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300038267 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.05.E10 DOE Joint Genome Institute (JGI) 3300038267 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 34617 54 0 0 0 0 SRX9411221 Unrestricted 0.0 single_particle_sort 3300028545 *Microbiome Permanent Draft University of Copenhagen Baltic Metagenome Sorted microbial cells from the Baltic Sea - Library 1 Science for Life Laboratory (SciLifeLab), Sweden 3300028545 Metagenome - Single Particle Sort Megahit v. 1.1.1 released by JGI data releasing policy No Yes philip.heller@sjsu.edu Philip Heller No Environmental Aquatic Oceanic Marine Photic zone marine 55.8 15.6 5002270 4715 0 0 0 0 0.0 single_particle_sort 3300041203 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.M4 DOE Joint Genome Institute (JGI) 3300041203 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 3160051 3196 0 0 0 0 SRX9657162 Unrestricted 0.0 single_particle_sort 3300015880 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG_AG-578-N02 DOE Joint Genome Institute (JGI) 3300015880 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 211593 273 1 0 0 0 SRX3579608 Unrestricted 0.0 single_particle_sort 3300018301 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Rhodospirillale_bacterium_SCGC_AG-650-P03 DOE Joint Genome Institute (JGI) 3300018301 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1171242 1200 1 0 1 0 SRX3981827 Unrestricted 0.0 single_particle_sort 3300015017 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.J17 DOE Joint Genome Institute (JGI) 3300015017 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 277251 389 1 0 1 0 Restricted 0.0 single_particle_sort 3300050932 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-L23 DOE Joint Genome Institute (JGI) 3300050932 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 826169 882 0 0 0 0 Restricted 0.0 single_particle_sort 3300071262 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_WGAX_F11_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071262 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 215416 220 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300016444 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - unknown_bacterium_SCGC_AG-640-D13 DOE Joint Genome Institute (JGI) 3300016444 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 1335968 1317 0 0 0 0 SRX3784273 Unrestricted 0.0 single_particle_sort 3300038220 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.E9 DOE Joint Genome Institute (JGI) 3300038220 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 89726 108 0 0 0 0 SRX9411048 Unrestricted 0.0 single_particle_sort 3300033283 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.M11 DOE Joint Genome Institute (JGI) 3300033283 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 252956 289 0 0 0 0 SRX7630592 Unrestricted 0.0 single_particle_sort 3300015117 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-O05 DOE Joint Genome Institute (JGI) 3300015117 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 408470 468 1 0 0 0 SRX3578339 Unrestricted 0.0 single_particle_sort 3300035870 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.F18 DOE Joint Genome Institute (JGI) 3300035870 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 1236887 1288 1 0 1 0 SRX8857248 Unrestricted 0.0 single_particle_sort 3300024673 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-C02 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024673 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 69577 103 0 0 0 0 0.0 single_particle_sort 3300019440 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent sediment, Guaymas Basin, Mexico - 6O_4868_13_01 DOE Joint Genome Institute (JGI) 3300019440 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.001 -110.5999 5569001 6024 4 0 7 0 SRX3974097 Unrestricted 0.0 single_particle_sort 3300024846 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-I04 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024846 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 30452 46 0 0 0 0 0.0 single_particle_sort 3300032336 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.F20 DOE Joint Genome Institute (JGI) 3300032336 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 337018 378 1 0 0 0 SRX6433346 Unrestricted 0.0 single_particle_sort 3300036024 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_D20 DOE Joint Genome Institute (JGI) 3300036024 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 47028 61 0 0 0 0 SRX10046601 Unrestricted 0.0 single_particle_sort 3300023354 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.C18 DOE Joint Genome Institute (JGI) 3300023354 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1291392 1323 2 0 2 0 SRX4520371 Unrestricted 0.0 single_particle_sort 3300016106 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-578-I10 DOE Joint Genome Institute (JGI) 3300016106 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 526079 587 1 0 1 0 SRX3579207 Unrestricted 0.0 single_particle_sort 3300035922 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.D20 DOE Joint Genome Institute (JGI) 3300035922 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 701743 765 0 0 0 0 SRX8862038 Unrestricted 0.0 single_particle_sort 3300037948 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.J19 DOE Joint Genome Institute (JGI) 3300037948 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 1917705 1708 1 0 1 0 SRX9410970 Unrestricted 0.0 single_particle_sort 3300016006 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-C18 DOE Joint Genome Institute (JGI) 3300016006 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 367445 476 0 0 1 0 SRX3563197 Unrestricted 0.0 single_particle_sort 3300024873 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR46.Redo.05.E21 DOE Joint Genome Institute (JGI) 3300024873 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.242 21.4899 136432 136 0 0 0 0 SRX4391293 Unrestricted 0.0 single_particle_sort 3300033296 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.C7 DOE Joint Genome Institute (JGI) 3300033296 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 382424 428 0 0 0 0 SRX7627187 Unrestricted 0.0 single_particle_sort 3300024646 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-I22 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024646 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 66439 83 0 0 0 0 0.0 single_particle_sort 3300022625 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Rhodospirillales bacterium JGI PCGPRD042217_12 DOE Joint Genome Institute (JGI) 3300022625 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 559646 641 2 0 2 0 SRX4414717 Unrestricted 0.0 single_particle_sort 3300015568 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown archaeum SCGC_AG-122-F14 DOE Joint Genome Institute (JGI) 3300015568 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 632926 739 0 0 0 0 SRX3573070 Unrestricted 0.0 single_particle_sort 3300023794 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.D12 DOE Joint Genome Institute (JGI) 3300023794 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 301248 405 0 0 0 0 SRX4548060 Unrestricted 0.0 single_particle_sort 3300033599 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P1_O3 DOE Joint Genome Institute (JGI) 3300033599 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 22265 28 0 0 0 0 SRX7530069 Unrestricted 0.0 single_particle_sort 3300071281 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_edMDA_H04_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071281 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 489549 583 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300010842 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_8_SCGC_AG-159-D03 DOE Joint Genome Institute (JGI) 3300010842 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 704581 883 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300038213 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.H19 DOE Joint Genome Institute (JGI) 3300038213 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 650208 705 1 0 0 0 SRX9411035 Unrestricted 0.0 single_particle_sort 3300021634 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.J15 DOE Joint Genome Institute (JGI) 3300021634 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 60414 77 0 0 0 0 SRX4009684 Unrestricted 0.0 single_particle_sort 3300016133 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_I21 DOE Joint Genome Institute (JGI) 3300016133 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 633779 638 0 0 0 0 SRX4067804 Unrestricted 0.0 single_particle_sort 3300016344 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Peregrinibacteria bacterium SCGC_AG-574-O09 DOE Joint Genome Institute (JGI) 3300016344 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 781756 825 1 0 0 0 SRX3579774 Unrestricted 0.0 single_particle_sort 3300014035 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.G07 DOE Joint Genome Institute (JGI) 3300014035 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1641663 1638 1 0 1 0 SRX3366941 Unrestricted 0.0 single_particle_sort 3300022630 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Sphingobacteriales bacterium JGI PCGPRD042217_21 DOE Joint Genome Institute (JGI) 3300022630 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 886773 933 0 0 1 0 SRX4415195 Unrestricted 0.0 single_particle_sort 3300016033 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-E11 DOE Joint Genome Institute (JGI) 3300016033 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 419922 512 0 0 0 0 SRX3563237 Unrestricted 0.0 single_particle_sort 3300024741 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-B05 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024741 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 118992 163 0 0 0 0 0.0 single_particle_sort 3300016538 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-B21 DOE Joint Genome Institute (JGI) 3300016538 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 688630 736 0 0 0 0 SRX3785642 Unrestricted 0.0 single_particle_sort 3300018401 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_G15 DOE Joint Genome Institute (JGI) 3300018401 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 2691278 2571 1 0 1 0 SRX4648993 Unrestricted 0.0 single_particle_sort 3300021834 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.G13 DOE Joint Genome Institute (JGI) 3300021834 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1888637 1990 0 0 0 0 SRX3989618 Unrestricted 0.0 single_particle_sort 3300033258 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Ontario, Canada - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.L19 DOE Joint Genome Institute (JGI) 3300033258 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 210088 226 0 0 0 0 SRX7630689 Unrestricted 0.0 single_particle_sort 3300034639 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.H15 DOE Joint Genome Institute (JGI) 3300034639 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1801077 1877 0 0 0 0 SRX8390926 Unrestricted 0.0 single_particle_sort 3300037896 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.K6 DOE Joint Genome Institute (JGI) 3300037896 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 297689 348 0 0 0 0 SRX9409544 Unrestricted 0.0 single_particle_sort 3300050875 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_C21_SVS DOE Joint Genome Institute (JGI) 3300050875 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 120367 125 0 0 0 0 Restricted 0.0 single_particle_sort 3300023372 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.H6 DOE Joint Genome Institute (JGI) 3300023372 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 216255 264 0 0 0 0 SRX4548990 Unrestricted 0.0 single_particle_sort 3300032480 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.L4 DOE Joint Genome Institute (JGI) 3300032480 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 261128 279 1 0 2 0 SRX6451976 Unrestricted 0.0 single_particle_sort 3300051112 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_H15_SVS DOE Joint Genome Institute (JGI) 3300051112 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 45170 54 0 0 0 0 Restricted 0.0 single_particle_sort 3300015465 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-L05 DOE Joint Genome Institute (JGI) 3300015465 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 152299 194 0 0 0 0 SRX3550852 Unrestricted 0.0 single_particle_sort 3300033200 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.H18 DOE Joint Genome Institute (JGI) 3300033200 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 2030694 1752 1 0 1 0 SRX7630264 Unrestricted 0.0 single_particle_sort 3300021099 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted archaeal cell/s from hot spring water in Nymph Lake, Yellowstone National Park, Wyoming, USA - Nanoarchaeota archaeon AD-903-L04 Oregon State University 3300021099 Metagenome - Single Particle Sort Spades v2.2.1 Manuscript to be submitted soon No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring water 44.75187 -110.7288 127134 157 1 0 1 0 0.0 single_particle_sort 3300015731 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown bacterium SCGC_AG-657-M08 DOE Joint Genome Institute (JGI) 3300015731 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 176100 186 0 0 0 0 SRX3601833 Unrestricted 0.0 single_particle_sort 3300016090 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Microgenometes bacterium SCGC_AG-274-F09 DOE Joint Genome Institute (JGI) 3300016090 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 519854 571 1 0 1 0 SRX3578254 Unrestricted 0.0 single_particle_sort 3300037379 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.F20.redo DOE Joint Genome Institute (JGI) 3300037379 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 55550 67 0 0 0 0 SRX9402803 Unrestricted 0.0 single_particle_sort 3300038244 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.H15 DOE Joint Genome Institute (JGI) 3300038244 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 583009 597 0 0 1 0 SRX9411116 Unrestricted 0.0 single_particle_sort 3300023570 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.C22 DOE Joint Genome Institute (JGI) 3300023570 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 39476 44 0 0 0 0 SRX4547901 Unrestricted 0.0 single_particle_sort 3300016420 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-M05 DOE Joint Genome Institute (JGI) 3300016420 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 1074077 1114 0 0 0 0 SRX3560789 Unrestricted 0.0 single_particle_sort 3300014406 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.M07 DOE Joint Genome Institute (JGI) 3300014406 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 592713 649 1 0 1 0 SRX3368151 Unrestricted 0.0 single_particle_sort 3300016190 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-N10 DOE Joint Genome Institute (JGI) 3300016190 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 703651 725 0 0 1 0 SRX3578230 Unrestricted 0.0 single_particle_sort 3300015437 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-B04 DOE Joint Genome Institute (JGI) 3300015437 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 87362 119 0 0 0 0 SRX3549921 Unrestricted 0.0 single_particle_sort 3300050928 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-K09 DOE Joint Genome Institute (JGI) 3300050928 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 1188422 1215 0 0 1 0 Restricted 0.0 single_particle_sort 3300016313 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Ash Meadows Big Spring, Nevada, USA - unknown_bacterium_SCGC_AG-297-E03 DOE Joint Genome Institute (JGI) 3300016313 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Groundwater 36.42 -116.36 7.72 738458 768 1 0 1 0 SRX3781591 Unrestricted 0.0 single_particle_sort 3300041280 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.M5 DOE Joint Genome Institute (JGI) 3300041280 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1605409 1651 0 0 0 0 SRX9653855 Unrestricted 0.0 single_particle_sort 3300015803 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-H16 DOE Joint Genome Institute (JGI) 3300015803 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 198139 266 0 0 0 0 SRX3560941 Unrestricted 0.0 single_particle_sort 3300051012 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_M21_SVS DOE Joint Genome Institute (JGI) 3300051012 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 46550 36 0 0 0 0 Restricted 0.0 single_particle_sort 3300022978 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.H17 DOE Joint Genome Institute (JGI) 3300022978 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 696661 811 1 0 1 0 SRX4416562 Unrestricted 0.0 single_particle_sort 3300023966 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.C10 DOE Joint Genome Institute (JGI) 3300023966 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 1455897 1560 0 0 0 0 SRX4549810 Unrestricted 0.0 single_particle_sort 3300016435 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Omnitrophica bacterium SCGC_AG-574-I07 DOE Joint Genome Institute (JGI) 3300016435 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 1233254 1194 1 0 0 0 SRX3578848 Unrestricted 0.0 single_particle_sort 3300051156 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_H20_SVS DOE Joint Genome Institute (JGI) 3300051156 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 83694 110 0 0 0 0 Restricted 0.0 single_particle_sort 3300015636 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Gongxiaoshe hot spring sediment, Tengchong, China - GXS.2.2014 1201 MDM2 GXS p2 16S.I5.double-seq DOE Joint Genome Institute (JGI) 3300015636 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 25.4401 98.4408 351191 439 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300014433 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.G14 DOE Joint Genome Institute (JGI) 3300014433 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 982573 965 0 0 0 0 SRX3368397 Unrestricted 0.0 single_particle_sort 3300024364 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.E7 DOE Joint Genome Institute (JGI) 3300024364 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 35095 38 0 0 0 0 SRX4547860 Unrestricted 0.0 single_particle_sort 3300015836 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-C06 DOE Joint Genome Institute (JGI) 3300015836 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 253167 335 0 0 0 0 SRX3563200 Unrestricted 0.0 single_particle_sort 3300016413 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-P01 DOE Joint Genome Institute (JGI) 3300016413 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 1154099 1082 0 0 0 0 SRX3578224 Unrestricted 0.0 single_particle_sort 3300032582 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.J13 DOE Joint Genome Institute (JGI) 3300032582 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 139135 148 1 0 1 0 SRX6452425 Unrestricted 0.0 single_particle_sort 3300024389 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Pseudomonas bacterium JGI PFNR15_H20 DOE Joint Genome Institute (JGI) 3300024389 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 235971 292 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300016320 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown archaeum SCGC_AG-578-O06 DOE Joint Genome Institute (JGI) 3300016320 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 760060 773 0 0 0 0 SRX3579607 Unrestricted 0.0 single_particle_sort 3300050804 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_M13_SVS DOE Joint Genome Institute (JGI) 3300050804 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 95470 132 0 0 0 0 Restricted 0.0 single_particle_sort 3300032380 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.H14 DOE Joint Genome Institute (JGI) 3300032380 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 630327 715 1 0 1 0 SRX6433315 Unrestricted 0.0 single_particle_sort 3300023472 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.G12 DOE Joint Genome Institute (JGI) 3300023472 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 1068827 1111 0 0 0 0 SRX4548512 Unrestricted 0.0 single_particle_sort 3300014415 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.D07 DOE Joint Genome Institute (JGI) 3300014415 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 623441 786 1 0 1 0 SRX3298888 Unrestricted 0.0 single_particle_sort 3300016522 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-A14 DOE Joint Genome Institute (JGI) 3300016522 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 544997 534 0 0 0 0 SRX3784746 Unrestricted 0.0 single_particle_sort 3300019424 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16028 DOE Joint Genome Institute (JGI) 3300019424 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 2127478 2446 1 0 1 0 SRX3985683 Unrestricted 0.0 single_particle_sort 3300035938 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.N12 DOE Joint Genome Institute (JGI) 3300035938 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1170567 1242 1 0 1 0 SRX8862575 Unrestricted 0.0 single_particle_sort 3300036040 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_B22 DOE Joint Genome Institute (JGI) 3300036040 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 28561 35 0 0 0 0 SRX10078023 Unrestricted 0.0 single_particle_sort 3300016367 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown archaeum SCGC_AG-582-P08 DOE Joint Genome Institute (JGI) 3300016367 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 705229 868 1 0 1 0 SRX3580341 Unrestricted 0.0 single_particle_sort 3300014333 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.I05 DOE Joint Genome Institute (JGI) 3300014333 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1013547 1228 1 0 1 0 SRX3367101 Unrestricted 0.0 single_particle_sort 3300019901 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-N5 DOE Joint Genome Institute (JGI) 3300019901 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 179065 246 0 0 1 0 SRX4663482 Unrestricted 0.0 single_particle_sort 3300026604 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-C11 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026604 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 111818 150 0 0 0 0 0.0 single_particle_sort 3300018168 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_I7 DOE Joint Genome Institute (JGI) 3300018168 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1000127 941 1 0 1 0 SRX4649709 Unrestricted 0.0 single_particle_sort 3300016335 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-L16 DOE Joint Genome Institute (JGI) 3300016335 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 608107 809 0 0 0 0 SRX3560734 Unrestricted 0.0 single_particle_sort 3300018294 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_B15 DOE Joint Genome Institute (JGI) 3300018294 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1095301 1091 0 0 0 0 SRX4650357 Unrestricted 0.0 single_particle_sort 3300021645 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.L12 DOE Joint Genome Institute (JGI) 3300021645 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 83235 103 0 0 0 0 SRX4005552 Unrestricted 0.0 single_particle_sort 3300050950 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-956-L13 DOE Joint Genome Institute (JGI) 3300050950 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1197303 -42.124435 387099 469 1 0 1 0 Restricted 0.0 single_particle_sort 3300014385 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.E20 DOE Joint Genome Institute (JGI) 3300014385 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 193517 252 0 0 0 0 SRX3298914 Unrestricted 0.0 single_particle_sort 3300018091 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - uncultured microorganism JGI MDM2 ZSSED05-1-L12 DOE Joint Genome Institute (JGI) 3300018091 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 56618 76 0 0 0 0 SRX3916444 Unrestricted 0.0 single_particle_sort 3300016458 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown bacterium SCGC_AG-657-F07 DOE Joint Genome Institute (JGI) 3300016458 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 1475895 1437 1 0 1 0 SRX3601166 Unrestricted 0.0 single_particle_sort 3300024419 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Pseudomonas bacterium JGI PFNR15_E17 DOE Joint Genome Institute (JGI) 3300024419 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 383889 430 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300050840 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_I11_SVS DOE Joint Genome Institute (JGI) 3300050840 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 29615 51 0 0 0 0 Restricted 0.0 single_particle_sort 3300018191 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_M10 DOE Joint Genome Institute (JGI) 3300018191 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 501392 492 0 0 0 0 SRX4651083 Unrestricted 0.0 single_particle_sort 3300016383 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown archaeum SCGC_AG-278-B16 DOE Joint Genome Institute (JGI) 3300016383 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 757650 911 1 0 1 0 SRX3578348 Unrestricted 0.0 single_particle_sort 3300041210 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.M17 DOE Joint Genome Institute (JGI) 3300041210 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1609597 1779 0 0 1 0 SRX9660726 Unrestricted 0.0 single_particle_sort 3300036004 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.C18 DOE Joint Genome Institute (JGI) 3300036004 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 766711 835 1 0 0 0 SRX8856767 Unrestricted 0.0 single_particle_sort 3300041359 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.H5 DOE Joint Genome Institute (JGI) 3300041359 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 905175 871 0 0 0 0 SRX9647222 Unrestricted 0.0 single_particle_sort 3300016126 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-274-D13 DOE Joint Genome Institute (JGI) 3300016126 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 537786 628 1 0 0 0 SRX3578249 Unrestricted 0.0 single_particle_sort 3300023448 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.M18 DOE Joint Genome Institute (JGI) 3300023448 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 395465 451 0 0 0 0 SRX4548582 Unrestricted 0.0 single_particle_sort 3300036748 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.N18.redo DOE Joint Genome Institute (JGI) 3300036748 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 613335 673 1 0 1 0 SRX8910268 Unrestricted 0.0 single_particle_sort 3300016496 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Lentisphaerae_bacterium_SCGC_AG-650-B07 DOE Joint Genome Institute (JGI) 3300016496 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 253861 227 1 0 1 0 SRX3784704 Unrestricted 0.0 single_particle_sort 3300035902 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.F16 DOE Joint Genome Institute (JGI) 3300035902 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 1257111 1424 1 0 0 0 SRX8899622 Unrestricted 0.0 single_particle_sort 3300015695 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-I06 DOE Joint Genome Institute (JGI) 3300015695 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 73845 98 0 0 0 0 SRX3561045 Unrestricted 0.0 single_particle_sort 3300022605 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Enterobacteriales bacterium JGI PCGPRD042217_20 DOE Joint Genome Institute (JGI) 3300022605 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 31873 38 0 0 0 0 SRX4415194 Unrestricted 0.0 single_particle_sort 3300016026 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-H17 DOE Joint Genome Institute (JGI) 3300016026 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 410681 503 1 0 0 0 SRX3563709 Unrestricted 0.0 single_particle_sort 3300015895 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown_bacterium_SCGC_AG-516-E17 DOE Joint Genome Institute (JGI) 3300015895 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Groundwater -28.24 26.8 8.55 303206 319 0 0 1 0 SRX3784218 Unrestricted 0.0 single_particle_sort 3300035955 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.I11 DOE Joint Genome Institute (JGI) 3300035955 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1503670 1657 1 0 1 0 SRX8862684 Unrestricted 0.0 single_particle_sort 3300016483 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from freshwater in Walker Pond, Maine, USA - unknown_bacterium_SCGC_AG-301-D06 DOE Joint Genome Institute (JGI) 3300016483 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.86 -69.58 7.45 1644341 1571 0 0 1 0 SRX3782059 Unrestricted 0.0 single_particle_sort 3300018157 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_I15 DOE Joint Genome Institute (JGI) 3300018157 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 617218 666 1 0 1 0 SRX4648717 Unrestricted 0.0 single_particle_sort 3300032512 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.F8 DOE Joint Genome Institute (JGI) 3300032512 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 628795 801 1 0 1 0 SRX6449960 Unrestricted 0.0 single_particle_sort 3300018321 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Syntrophaceae_bacterium_SCGC_AG-650-P18 DOE Joint Genome Institute (JGI) 3300018321 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1282342 1292 0 0 0 0 SRX3976992 Unrestricted 0.0 single_particle_sort 3300015149 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - unknown archaeum SCGC_AG-290-A23 DOE Joint Genome Institute (JGI) 3300015149 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 710678 855 0 0 1 0 SRX3578543 Unrestricted 0.0 single_particle_sort 3300024694 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-J02 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024694 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 95673 120 0 0 0 0 0.0 single_particle_sort 3300033244 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, Ontario, Canada - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.E14 DOE Joint Genome Institute (JGI) 3300033244 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 386626 445 0 0 0 0 SRX7630690 Unrestricted 0.0 single_particle_sort 3300034475 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.C17 DOE Joint Genome Institute (JGI) 3300034475 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 917231 1000 0 0 1 0 SRX8390212 Unrestricted 0.0 single_particle_sort 3300023746 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.H13 DOE Joint Genome Institute (JGI) 3300023746 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 119110 133 0 0 0 0 SRX4549814 Unrestricted 0.0 single_particle_sort 3300041223 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.N20 DOE Joint Genome Institute (JGI) 3300041223 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2170451 2222 1 0 1 0 SRX9652974 Unrestricted 0.0 single_particle_sort 3300051790 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_A7_SVS DOE Joint Genome Institute (JGI) 3300051790 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 60071 70 0 0 0 0 Restricted 0.0 single_particle_sort 3300016358 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-G13 DOE Joint Genome Institute (JGI) 3300016358 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 779140 848 1 0 0 0 SRX3563254 Unrestricted 0.0 single_particle_sort 3300035845 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.C4 DOE Joint Genome Institute (JGI) 3300035845 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 539603 718 0 0 0 0 SRX8896895 Unrestricted 0.0 single_particle_sort 3300038200 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.C11 DOE Joint Genome Institute (JGI) 3300038200 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 419465 532 0 0 0 0 SRX9411822 Unrestricted 0.0 single_particle_sort 3300022942 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.D10 DOE Joint Genome Institute (JGI) 3300022942 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 32555 34 0 0 0 0 SRX4454667 Unrestricted 0.0 single_particle_sort 3300014485 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.F07 DOE Joint Genome Institute (JGI) 3300014485 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 2768470 2497 1 0 1 0 SRX3366860 Unrestricted 0.0 single_particle_sort 3300023773 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.K13 DOE Joint Genome Institute (JGI) 3300023773 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 246110 252 0 0 0 0 SRX4548069 Unrestricted 0.0 single_particle_sort 3300038041 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.05.J17 DOE Joint Genome Institute (JGI) 3300038041 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 189170 272 0 0 0 0 SRX9411266 Unrestricted 0.0 single_particle_sort 3300032556 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.L10 DOE Joint Genome Institute (JGI) 3300032556 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 1221252 1345 1 0 1 0 SRX6426241 Unrestricted 0.0 single_particle_sort 3300023534 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.H18 DOE Joint Genome Institute (JGI) 3300023534 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 2248426 2420 0 0 1 0 SRX4548438 Unrestricted 0.0 single_particle_sort 3300049975 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_O17_SVS DOE Joint Genome Institute (JGI) 3300049975 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 36225 75 0 0 0 0 Restricted 0.0 single_particle_sort 3300010799 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_1_SCGC_AG-138-A21 DOE Joint Genome Institute (JGI) 3300010799 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 356886 455 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300023951 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.K14 DOE Joint Genome Institute (JGI) 3300023951 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 1171661 1295 0 0 1 0 SRX4501288 Unrestricted 0.0 single_particle_sort 3300023641 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.C17 DOE Joint Genome Institute (JGI) 3300023641 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 116035 142 0 0 0 0 SRX4415861 Unrestricted 0.0 single_particle_sort 3300037954 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.I14 DOE Joint Genome Institute (JGI) 3300037954 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 946998 1124 1 0 1 0 SRX9410999 Unrestricted 0.0 single_particle_sort 3300016396 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-188-E16 DOE Joint Genome Institute (JGI) 3300016396 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 914129 961 1 0 1 0 SRX3577115 Unrestricted 0.0 single_particle_sort 3300038141 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.E16 DOE Joint Genome Institute (JGI) 3300038141 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 908245 1146 0 0 1 0 SRX9411764 Unrestricted 0.0 single_particle_sort 3300022616 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Caulobacterales bacterium JGI PCGPRD042217_29 DOE Joint Genome Institute (JGI) 3300022616 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 520428 610 2 0 1 0 SRX4415247 Unrestricted 0.0 single_particle_sort 3300023348 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.N19 DOE Joint Genome Institute (JGI) 3300023348 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1006572 1059 1 0 1 0 SRX4520193 Unrestricted 0.0 single_particle_sort 3300023841 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.J19 DOE Joint Genome Institute (JGI) 3300023841 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 532020 632 0 0 2 0 SRX4500814 Unrestricted 0.0 single_particle_sort 3300019404 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16010 DOE Joint Genome Institute (JGI) 3300019404 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 1634546 1734 1 0 1 0 SRX3985609 Unrestricted 0.0 single_particle_sort 3300036075 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_C12 DOE Joint Genome Institute (JGI) 3300036075 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 157158 183 0 0 1 0 SRX10046158 Unrestricted 0.0 single_particle_sort 3300041295 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.J11 DOE Joint Genome Institute (JGI) 3300041295 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 156796 167 0 0 0 0 SRX9655270 Unrestricted 0.0 single_particle_sort 3300033933 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.G19 DOE Joint Genome Institute (JGI) 3300033933 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 588220 672 0 0 0 0 SRX7630457 Unrestricted 0.0 single_particle_sort 3300016185 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG_AG-578-F13 DOE Joint Genome Institute (JGI) 3300016185 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 602745 717 1 0 0 0 SRX3579198 Unrestricted 0.0 single_particle_sort 3300019921 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-L14 DOE Joint Genome Institute (JGI) 3300019921 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 1097010 1191 0 0 1 0 SRX4663356 Unrestricted 0.0 single_particle_sort 3300021670 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.L15 DOE Joint Genome Institute (JGI) 3300021670 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 208446 239 0 0 0 0 SRX4009682 Unrestricted 0.0 single_particle_sort 3300016085 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Omnitrophica bacterium SCGC_AG-657-I11 DOE Joint Genome Institute (JGI) 3300016085 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 558501 566 2 0 1 0 SRX3779629 Unrestricted 0.0 single_particle_sort 3300032495 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.I9 DOE Joint Genome Institute (JGI) 3300032495 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 1051747 1034 0 0 0 0 SRX6426347 Unrestricted 0.0 single_particle_sort 3300015810 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Microgenometes bacterium SCGC_AG-274-L20 DOE Joint Genome Institute (JGI) 3300015810 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 256872 287 1 0 1 0 SRX3578294 Unrestricted 0.0 single_particle_sort 3300033906 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.D16 DOE Joint Genome Institute (JGI) 3300033906 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 309046 368 0 0 0 0 SRX7626530 Unrestricted 0.0 single_particle_sort 3300016300 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-E09 DOE Joint Genome Institute (JGI) 3300016300 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 640238 753 1 0 1 0 SRX3551013 Unrestricted 0.0 single_particle_sort 3300038258 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.05.K12 DOE Joint Genome Institute (JGI) 3300038258 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 131103 186 0 0 0 0 SRX9411187 Unrestricted 0.0 single_particle_sort 3300037972 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.L20 DOE Joint Genome Institute (JGI) 3300037972 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 19545 24 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300050824 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_D11_SVS DOE Joint Genome Institute (JGI) 3300050824 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 36300 60 0 0 0 0 Restricted 0.0 single_particle_sort 3300033213 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.E13 DOE Joint Genome Institute (JGI) 3300033213 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 668515 720 0 0 1 0 SRX7628765 Unrestricted 0.0 single_particle_sort 3300016502 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-D06 DOE Joint Genome Institute (JGI) 3300016502 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 311901 305 0 0 0 0 SRX3784700 Unrestricted 0.0 single_particle_sort 3300015591 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown bacterium SCGC_AG-122-O19 DOE Joint Genome Institute (JGI) 3300015591 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 1253687 1243 0 0 0 0 SRX3574139 Unrestricted 0.0 single_particle_sort 3300023979 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.L15 DOE Joint Genome Institute (JGI) 3300023979 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 1977780 1894 1 0 1 0 SRX4501370 Unrestricted 0.0 single_particle_sort 3300071184 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_edMDA_E06_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071184 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 592961 621 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300032702 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.I7 DOE Joint Genome Institute (JGI) 3300032702 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 428537 480 1 0 0 0 SRX6427736 Unrestricted 0.0 single_particle_sort 3300033267 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.G14 DOE Joint Genome Institute (JGI) 3300033267 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 685115 784 0 0 0 0 SRX7630602 Unrestricted 0.0 single_particle_sort 3300032395 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.C21 DOE Joint Genome Institute (JGI) 3300032395 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 318245 376 0 0 0 0 SRX6433343 Unrestricted 0.0 single_particle_sort 3300035834 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0815.Sybr.01.I12 DOE Joint Genome Institute (JGI) 3300035834 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 369616 450 0 0 0 0 SRX8894453 Unrestricted 0.0 single_particle_sort 3300033235 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.M12 DOE Joint Genome Institute (JGI) 3300033235 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 308887 312 0 0 0 0 SRX7630597 Unrestricted 0.0 single_particle_sort 3300016555 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from underground thermal water from 5P borehole, Tomsk, Russia - Ignavibacteria_SCGC_AG-717-E19 DOE Joint Genome Institute (JGI) 3300016555 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole Groundwater 58.0758 82.8374 7.49-7.6 1472185 1282 0 0 0 0 SRX3783261 Unrestricted 0.0 single_particle_sort 3300071211 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_H04_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071211 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 2025266 2296 1 0 2 0 Unrestricted 0.0 single_particle_sort 3300018246 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_H9 DOE Joint Genome Institute (JGI) 3300018246 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 742177 734 0 0 0 0 SRX4652594 Unrestricted 0.0 single_particle_sort 3300015557 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-K18 DOE Joint Genome Institute (JGI) 3300015557 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 557088 680 1 0 1 0 SRX3549992 Unrestricted 0.0 single_particle_sort 3300033915 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.E18 DOE Joint Genome Institute (JGI) 3300033915 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 75948 79 0 0 0 0 SRX7626534 Unrestricted 0.0 single_particle_sort 3300033220 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.E14 DOE Joint Genome Institute (JGI) 3300033220 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 195988 230 0 0 0 0 SRX7628980 Unrestricted 0.0 single_particle_sort 3300015623 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from a deep sea mud volcano in Anaximander Mountains, Eastern Mediterranean Sea - B17.1.2014-1113 MDM2 B17 p1 16S.H6.double-seq DOE Joint Genome Institute (JGI) 3300015623 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Mud volcano Marine Unclassified Deep sea volcano 35.7369 30.475 248268 257 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300010777 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_35_SCGC_AG-138-M05 DOE Joint Genome Institute (JGI) 3300010777 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 330849 334 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300014426 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.L05 DOE Joint Genome Institute (JGI) 3300014426 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 800833 889 1 0 0 0 SRX3367894 Unrestricted 0.0 single_particle_sort 3300018273 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-A09 DOE Joint Genome Institute (JGI) 3300018273 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1062718 1004 0 0 0 0 SRX4815033 Unrestricted 0.0 single_particle_sort 3300016400 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-K05 DOE Joint Genome Institute (JGI) 3300016400 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 877351 988 1 0 1 0 SRX3560721 Unrestricted 0.0 single_particle_sort 3300041371 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.K13 DOE Joint Genome Institute (JGI) 3300041371 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 864177 893 0 0 0 0 SRX9648540 Unrestricted 0.0 single_particle_sort 3300013301 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - Parcubacteria bacterium JGI GBS_9_M17 DOE Joint Genome Institute (JGI) 3300013301 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Near-boiling (>90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1262988 1273 1 0 1 0 SRX4062779 Unrestricted 0.0 single_particle_sort 3300019578 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-B16 DOE Joint Genome Institute (JGI) 3300019578 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 38480 56 0 0 0 0 SRX3903012 Unrestricted 0.0 single_particle_sort 3300050908 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-A23 DOE Joint Genome Institute (JGI) 3300050908 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 1063437 975 0 0 0 0 Restricted 0.0 single_particle_sort 3300022037 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Atribacteria bacterium JGI MDM2 LBsed72-1-E10 DOE Joint Genome Institute (JGI) 3300022037 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment freshwater sediment 53.7598 107.9791 841232 974 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300015823 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-K04 DOE Joint Genome Institute (JGI) 3300015823 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 284685 315 0 0 0 0 SRX3561047 Unrestricted 0.0 single_particle_sort 3300010754 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_29_SCGC_AG-138-K13 DOE Joint Genome Institute (JGI) 3300010754 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 173460 206 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023009 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.F13 DOE Joint Genome Institute (JGI) 3300023009 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 1423552 1609 1 0 1 0 SRX4416610 Unrestricted 0.0 single_particle_sort 3300035907 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.I18 DOE Joint Genome Institute (JGI) 3300035907 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 661822 601 0 0 0 0 SRX8900014 Unrestricted 0.0 single_particle_sort 3300044084 *Microbiome Permanent Draft High-throughput characterization of viral-host interactions Sorted cell/s from lab media in Berkeley, California, United States - SPS_viraltag_JGI_H497-N18 DOE Joint Genome Institute (JGI) 3300044084 Metagenome - Single Particle Sort spades v. 3.15.0 released based on JGI ITS No Yes sroux@lbl.gov Simon Roux No Engineered Lab enrichment Unclassified Defined media Unclassified Defined media 37.8777 -122.251 22411 22 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300010819 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_15_SCGC_AG-138-G21 DOE Joint Genome Institute (JGI) 3300010819 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 541682 613 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300018105 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_J17 DOE Joint Genome Institute (JGI) 3300018105 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 194117 216 0 0 0 0 SRX4647100 Unrestricted 0.0 single_particle_sort 3300015574 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown bacterium SCGC_AG-122-N06 DOE Joint Genome Institute (JGI) 3300015574 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 721778 790 0 0 0 0 SRX3574086 Unrestricted 0.0 single_particle_sort 3300014431 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.E11 DOE Joint Genome Institute (JGI) 3300014431 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 768558 960 0 0 0 0 SRX3298912 Unrestricted 0.0 single_particle_sort 3300041124 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.E20 DOE Joint Genome Institute (JGI) 3300041124 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1873434 1880 0 0 1 0 SRX9668658 Unrestricted 0.0 single_particle_sort 3300037999 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .F7 DOE Joint Genome Institute (JGI) 3300037999 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 810758 1106 0 0 0 0 SRX9411522 Unrestricted 0.0 single_particle_sort 3300032563 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.N19 DOE Joint Genome Institute (JGI) 3300032563 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 516536 678 1 0 1 0 SRX6452140 Unrestricted 0.0 single_particle_sort 3300015706 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-I12 DOE Joint Genome Institute (JGI) 3300015706 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 128521 148 0 0 0 0 SRX3560704 Unrestricted 0.0 single_particle_sort 3300033334 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.F6 DOE Joint Genome Institute (JGI) 3300033334 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 398259 449 0 0 0 0 SRX7630490 Unrestricted 0.0 single_particle_sort 3300023918 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.I22 DOE Joint Genome Institute (JGI) 3300023918 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 934867 1040 0 0 0 0 SRX4390945 Unrestricted 0.0 single_particle_sort 3300023992 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.J21 DOE Joint Genome Institute (JGI) 3300023992 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 2112743 2116 1 0 1 0 SRX4549243 Unrestricted 0.0 single_particle_sort 3300018380 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Chloroflexia_bacterium_SCGC_AG-650-P17 DOE Joint Genome Institute (JGI) 3300018380 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1958102 1798 0 0 1 0 SRX3974915 Unrestricted 0.0 single_particle_sort 3300015801 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-L14 DOE Joint Genome Institute (JGI) 3300015801 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 224200 262 0 0 0 0 SRX3560720 Unrestricted 0.0 single_particle_sort 3300016311 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG-582-A13 DOE Joint Genome Institute (JGI) 3300016311 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 612748 766 1 0 1 0 SRX3580153 Unrestricted 0.0 single_particle_sort 3300024659 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-L05 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024659 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 63799 93 0 0 0 0 0.0 single_particle_sort 3300016618 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, USA - Aminicenantes_bacterium_SCGC_AG-640-A08 DOE Joint Genome Institute (JGI) 3300016618 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Acidic Artesian spring Sediment Hot spring sediment 34.9956 -98.6889 7.5 2876366 2646 0 0 1 0 SRX3784232 Unrestricted 0.0 single_particle_sort 3300015733 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-I05 DOE Joint Genome Institute (JGI) 3300015733 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 138234 188 0 0 0 0 SRX3560975 Unrestricted 0.0 single_particle_sort 3300024714 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-D05 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024714 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 108462 139 0 0 0 0 0.0 single_particle_sort 3300041619 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.J6 DOE Joint Genome Institute (JGI) 3300041619 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2130189 2199 0 0 0 0 SRX14834532 Unrestricted 0.0 single_particle_sort 3300041394 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.K18 DOE Joint Genome Institute (JGI) 3300041394 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 944742 1155 0 0 0 0 SRX9645545 Unrestricted 0.0 single_particle_sort 3300018116 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_H11 DOE Joint Genome Institute (JGI) 3300018116 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 477034 322 0 0 0 0 SRX4647102 Unrestricted 0.0 single_particle_sort 3300019903 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-L5 DOE Joint Genome Institute (JGI) 3300019903 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 328778 396 1 0 1 0 SRX4663357 Unrestricted 0.0 single_particle_sort 3300014331 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.D22 DOE Joint Genome Institute (JGI) 3300014331 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 904422 1094 1 0 1 0 SRX3366850 Unrestricted 0.0 single_particle_sort 3300071200 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_edMDA_D09_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071200 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 1361074 1387 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300050178 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_H11_SVS DOE Joint Genome Institute (JGI) 3300050178 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 183688 252 0 0 0 0 Restricted 0.0 single_particle_sort 3300019519 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from Echinus Geyser water, Yellowstone National Park, Wyoming, United States - NAG2 archaeon FF85 JGI 000156CP-C16 DOE Joint Genome Institute (JGI) 3300019519 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Acidic hot water 44.7225 -110.7014 1309565 1462 2 0 1 0 Unrestricted 0.0 single_particle_sort 3300015715 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-F04 DOE Joint Genome Institute (JGI) 3300015715 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 106159 167 0 0 0 0 SRX3560817 Unrestricted 0.0 single_particle_sort 3300022128 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Norwegian Sea - JL-ETNP-Z39_bacterium_AG-205-J14 DOE Joint Genome Institute (JGI) 3300022128 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Sediment Marine Unclassified marine sediment 73.3565 0.1223 2951004 2557 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300018152 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - AC1_bacterium_SCGC_AG-650-F08 DOE Joint Genome Institute (JGI) 3300018152 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 622373 617 1 0 0 0 SRX3974429 Unrestricted 0.0 single_particle_sort 3300024575 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Rhizobium bacterium JGI PFNR15_E10 DOE Joint Genome Institute (JGI) 3300024575 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 271541 331 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035266 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_D8 DOE Joint Genome Institute (JGI) 3300035266 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 97740 125 0 0 0 0 SRX9537910 Unrestricted 0.0 single_particle_sort 3300022947 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.N14 DOE Joint Genome Institute (JGI) 3300022947 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 27546 35 0 0 0 0 SRX4420716 Unrestricted 0.0 single_particle_sort 3300021775 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.J10 DOE Joint Genome Institute (JGI) 3300021775 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 783017 924 0 0 0 0 SRX4009624 Unrestricted 0.0 single_particle_sort 3300016411 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Omnitrophica bacterium SCGC_AG-278-F09 DOE Joint Genome Institute (JGI) 3300016411 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 1028561 1071 2 0 1 0 SRX3578374 Unrestricted 0.0 single_particle_sort 3300015408 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Elusimicrobia bacterium SCGC_AG-128-O20 DOE Joint Genome Institute (JGI) 3300015408 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 895555 947 1 0 2 0 SRX3577091 Unrestricted 0.0 single_particle_sort 3300022028 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - Acetothermia bacterium JGI MDM2 NGM80-1-L17 DOE Joint Genome Institute (JGI) 3300022028 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 630403 716 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300022989 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.K20 DOE Joint Genome Institute (JGI) 3300022989 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 715723 804 1 0 1 0 SRX4420328 Unrestricted 0.0 single_particle_sort 3300033281 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.H15 DOE Joint Genome Institute (JGI) 3300033281 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 251702 269 0 0 0 0 SRX7630609 Unrestricted 0.0 single_particle_sort 3300015450 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-N18 DOE Joint Genome Institute (JGI) 3300015450 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 120673 161 0 0 0 0 SRX3550868 Unrestricted 0.0 single_particle_sort 3300033345 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.F5 DOE Joint Genome Institute (JGI) 3300033345 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 63056 72 0 0 0 0 SRX7630479 Unrestricted 0.0 single_particle_sort 3300016507 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, USA - unknown_bacterium_SCGC_AG-640-M19 DOE Joint Genome Institute (JGI) 3300016507 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Acidic Artesian spring Sediment Hot spring sediment 34.9956 -98.6889 7.5 379758 411 1 0 1 0 SRX3784216 Unrestricted 0.0 single_particle_sort 3300041201 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.H18 DOE Joint Genome Institute (JGI) 3300041201 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 763030 813 0 0 1 0 SRX9657094 Unrestricted 0.0 single_particle_sort 3300018303 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_J9 DOE Joint Genome Institute (JGI) 3300018303 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 1111394 1158 1 0 1 0 SRX4646765 Unrestricted 0.0 single_particle_sort 3300013030 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - DC4.3.2014 1216 MDM DC4 p3 16S.I12.double-peak DOE Joint Genome Institute (JGI) 3300013030 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 68057 92 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300037977 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.H15 DOE Joint Genome Institute (JGI) 3300037977 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 953275 1106 0 0 0 0 SRX9411000 Unrestricted 0.0 single_particle_sort 3300035740 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.H11 DOE Joint Genome Institute (JGI) 3300035740 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1257887 1319 1 0 1 0 SRX8857459 Unrestricted 0.0 single_particle_sort 3300015505 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown bacterium SCGC_AG-122-A11 DOE Joint Genome Institute (JGI) 3300015505 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 274884 348 0 0 1 0 SRX3571229 Unrestricted 0.0 single_particle_sort 3300038084 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .N15 DOE Joint Genome Institute (JGI) 3300038084 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 480394 585 0 0 0 0 SRX9411534 Unrestricted 0.0 single_particle_sort 3300018174 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_K12 DOE Joint Genome Institute (JGI) 3300018174 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 135026 179 0 0 0 0 SRX4652221 Unrestricted 0.0 single_particle_sort 3300071258 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_Wchmk_E10_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071258 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 683505 779 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300041140 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.E7 DOE Joint Genome Institute (JGI) 3300041140 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 856085 894 0 0 0 0 SRX9653911 Unrestricted 0.0 single_particle_sort 3300024478 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.G9 DOE Joint Genome Institute (JGI) 3300024478 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 119095 161 0 0 0 0 SRX4547854 Unrestricted 0.0 single_particle_sort 3300023884 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.D18 DOE Joint Genome Institute (JGI) 3300023884 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 715121 839 1 0 2 0 SRX4519520 Unrestricted 0.0 single_particle_sort 3300018336 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-C04 DOE Joint Genome Institute (JGI) 3300018336 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1465354 1439 0 0 1 0 SRX3978414 Unrestricted 0.0 single_particle_sort 3300038184 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.C21 DOE Joint Genome Institute (JGI) 3300038184 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 543412 691 0 0 0 0 SRX9411811 Unrestricted 0.0 single_particle_sort 3300010772 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_26_SCGC_AG-159-I18 DOE Joint Genome Institute (JGI) 3300010772 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 215072 278 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300022132 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.I22 DOE Joint Genome Institute (JGI) 3300022132 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 3252735 2981 0 0 0 0 SRX3998123 Unrestricted 0.0 single_particle_sort 3300015790 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-I18 DOE Joint Genome Institute (JGI) 3300015790 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 198654 247 0 0 0 0 SRX3560806 Unrestricted 0.0 single_particle_sort 3300018403 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_K15 DOE Joint Genome Institute (JGI) 3300018403 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 2347747 2356 1 0 1 0 SRX4650347 Unrestricted 0.0 single_particle_sort 3300015552 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown bacterium SCGC_AG-122-J19 DOE Joint Genome Institute (JGI) 3300015552 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 838329 662 1 1 0 1 SRX3573091 Unrestricted 0.0 single_particle_sort 3300024743 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-I21 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024743 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 133979 166 0 0 0 0 0.0 single_particle_sort 3300016031 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-N15 DOE Joint Genome Institute (JGI) 3300016031 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 395867 507 0 0 0 0 SRX3563033 Unrestricted 0.0 single_particle_sort 3300023869 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.E18 DOE Joint Genome Institute (JGI) 3300023869 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 661757 740 0 0 1 0 SRX4389715 Unrestricted 0.0 single_particle_sort 3300034709 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.3.G12 DOE Joint Genome Institute (JGI) 3300034709 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 572049 623 0 0 1 0 SRX8390472 Unrestricted 0.0 single_particle_sort 3300038069 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.E20 DOE Joint Genome Institute (JGI) 3300038069 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 60920 64 0 0 0 0 SRX9411464 Unrestricted 0.0 single_particle_sort 3300022032 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal pool water in Devils Hole, Amargosa Valley, Nevada - Thaumarchaeota_MG1__archaeum_AG-122-O07 DOE Joint Genome Institute (JGI) 3300022032 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified geothermal water 36.4252 -116.2914 775458 1000 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300051149 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_D14_SVS DOE Joint Genome Institute (JGI) 3300051149 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 232365 289 0 0 0 0 Restricted 0.0 single_particle_sort 3300015939 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Microgenometes bacterium SCGC_AG-274-J02 DOE Joint Genome Institute (JGI) 3300015939 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 355498 397 1 0 1 0 SRX3578264 Unrestricted 0.0 single_particle_sort 3300038211 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.C11 DOE Joint Genome Institute (JGI) 3300038211 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 509174 594 0 0 1 0 SRX9411032 Unrestricted 0.0 single_particle_sort 3300016131 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_H12 DOE Joint Genome Institute (JGI) 3300016131 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 598365 631 0 0 0 0 SRX4066388 Unrestricted 0.0 single_particle_sort 3300021704 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.J19 DOE Joint Genome Institute (JGI) 3300021704 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 412082 413 1 0 1 0 SRX4009717 Unrestricted 0.0 single_particle_sort 3300071283 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_B06_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071283 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 2201738 2623 1 0 3 0 Unrestricted 0.0 single_particle_sort 3300015219 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - unknown bacterium SCGC_AG-290-E14 DOE Joint Genome Institute (JGI) 3300015219 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 373034 419 0 0 0 0 SRX3578554 Unrestricted 0.0 single_particle_sort 3300018436 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_F13 DOE Joint Genome Institute (JGI) 3300018436 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 485598 517 0 0 0 0 SRX4652797 Unrestricted 0.0 single_particle_sort 3300033262 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.J16 DOE Joint Genome Institute (JGI) 3300033262 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 191424 239 0 0 0 0 SRX7630661 Unrestricted 0.0 single_particle_sort 3300024871 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR46.Redo.05.K15 DOE Joint Genome Institute (JGI) 3300024871 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.242 21.4899 77534 79 0 0 0 0 SRX4391261 Unrestricted 0.0 single_particle_sort 3300015516 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-H17 DOE Joint Genome Institute (JGI) 3300015516 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 340830 409 0 0 1 0 SRX3549983 Unrestricted 0.0 single_particle_sort 3300024378 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.H8 DOE Joint Genome Institute (JGI) 3300024378 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 110936 138 0 0 0 0 SRX4547856 Unrestricted 0.0 single_particle_sort 3300024671 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-B08 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024671 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 80526 102 0 0 0 0 0.0 single_particle_sort 3300019980 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-D11 DOE Joint Genome Institute (JGI) 3300019980 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 551216 615 1 0 0 0 SRX4653765 Unrestricted 0.0 single_particle_sort 3300022964 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.G20 DOE Joint Genome Institute (JGI) 3300022964 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 401234 457 0 0 0 0 SRX4416503 Unrestricted 0.0 single_particle_sort 3300028614 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.J16 DOE Joint Genome Institute (JGI) 3300028614 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 1719912 1843 0 0 0 0 SRX5093722 Unrestricted 0.0 single_particle_sort 3300016290 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-274-A11 DOE Joint Genome Institute (JGI) 3300016290 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 680482 741 1 0 0 0 SRX3578234 Unrestricted 0.0 single_particle_sort 3300023844 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.L12 DOE Joint Genome Institute (JGI) 3300023844 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 577376 647 1 0 1 0 SRX4522602 Unrestricted 0.0 single_particle_sort 3300015770 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-J09 DOE Joint Genome Institute (JGI) 3300015770 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 165826 224 0 0 0 0 SRX3560934 Unrestricted 0.0 single_particle_sort 3300041180 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.E6 DOE Joint Genome Institute (JGI) 3300041180 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 821713 835 0 0 0 0 SRX9523938 Unrestricted 0.0 single_particle_sort 3300041617 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.N11 DOE Joint Genome Institute (JGI) 3300041617 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 4911076 4851 1 0 1 0 SRX14834150 Unrestricted 0.0 single_particle_sort 3300037951 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.I11 DOE Joint Genome Institute (JGI) 3300037951 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 1209446 1497 0 0 1 0 SRX9410994 Unrestricted 0.0 single_particle_sort 3300051064 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_E4_SVS DOE Joint Genome Institute (JGI) 3300051064 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 77644 98 0 0 0 0 Restricted 0.0 single_particle_sort 3300010792 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.I3 DOE Joint Genome Institute (JGI) 3300010792 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 287388 411 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300017456 *Microbiome Permanent Draft Yellowstone National Park Obsidian Pool microbial communities Hotspring water microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA - Obsidian 1, mini-metaG sequencing Stanford University 3300017456 Metagenome - Single Particle Sort SPAdes v10.0; metaSPAdes v10.0; Megahit released by JGI data releasing policy No Yes berghuis@stanford.edu Bojk Berghuis No Environmental Aquatic Hot (42-90C) Thermal springs Neutral hotspring water 44.428 -110.5885 3599735 4223 1 0 1 0 0.0 single_particle_sort 3300038144 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.K18 DOE Joint Genome Institute (JGI) 3300038144 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 656827 766 0 0 0 0 SRX9411799 Unrestricted 0.0 single_particle_sort 3300034563 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.I22 DOE Joint Genome Institute (JGI) 3300034563 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 551707 609 0 0 0 0 SRX8393455 Unrestricted 0.0 single_particle_sort 3300010718 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.M7 DOE Joint Genome Institute (JGI) 3300010718 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 35043 51 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300019517 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from Echinus Geyser water, Yellowstone National Park, Wyoming, United States - NAG2 archaeon OSP418 JGI 000156CP-F08 DOE Joint Genome Institute (JGI) 3300019517 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Acidic hot water 44.7225 -110.7014 1093978 1307 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023644 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.D22 DOE Joint Genome Institute (JGI) 3300023644 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 206278 180 0 0 0 0 SRX4547905 Unrestricted 0.0 single_particle_sort 3300024796 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-J22 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024796 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 198375 239 0 0 0 0 0.0 single_particle_sort 3300035780 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.G6 DOE Joint Genome Institute (JGI) 3300035780 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 429233 488 0 0 0 0 SRX8858255 Unrestricted 0.0 single_particle_sort 3300023954 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.G19 DOE Joint Genome Institute (JGI) 3300023954 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 1104764 1337 0 0 0 0 SRX4549816 Unrestricted 0.0 single_particle_sort 3300023531 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.G10 DOE Joint Genome Institute (JGI) 3300023531 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 1524177 1586 1 0 1 0 SRX4548446 Unrestricted 0.0 single_particle_sort 3300038044 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.G15 DOE Joint Genome Institute (JGI) 3300038044 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 2277329 2008 1 0 1 0 SRX9411293 Unrestricted 0.0 single_particle_sort 3300041305 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.D14 DOE Joint Genome Institute (JGI) 3300041305 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2460470 2411 0 0 0 0 SRX9645061 Unrestricted 0.0 single_particle_sort 3300024398 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Limnohabitans bacterium JGI PFNR15_C18 DOE Joint Genome Institute (JGI) 3300024398 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 149216 189 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300015142 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - Peregrinibacteria bacterium SCGC_AG-290-P16 DOE Joint Genome Institute (JGI) 3300015142 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 592174 684 1 0 1 0 SRX3578801 Unrestricted 0.0 single_particle_sort 3300021710 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.M21 DOE Joint Genome Institute (JGI) 3300021710 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 376062 442 0 0 0 0 SRX4009726 Unrestricted 0.0 single_particle_sort 3300015042 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.K6 DOE Joint Genome Institute (JGI) 3300015042 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 471331 567 1 0 1 0 Restricted 0.0 single_particle_sort 3300033385 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.L10 DOE Joint Genome Institute (JGI) 3300033385 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 478284 556 1 0 1 0 SRX7630587 Unrestricted 0.0 single_particle_sort 3300024758 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-D06 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024758 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 157470 180 0 0 0 0 0.0 single_particle_sort 3300018324 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Spirochaetes_bacterium_SCGC_AG-650-L10 DOE Joint Genome Institute (JGI) 3300018324 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1322113 1353 1 0 1 0 SRX3976991 Unrestricted 0.0 single_particle_sort 3300033241 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.J12 DOE Joint Genome Institute (JGI) 3300033241 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 380847 443 0 0 0 0 SRX7630598 Unrestricted 0.0 single_particle_sort 3300024691 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-J06 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024691 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 98023 118 0 0 0 0 0.0 single_particle_sort 3300022949 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.I6 DOE Joint Genome Institute (JGI) 3300022949 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 110359 123 0 0 0 0 SRX4454500 Unrestricted 0.0 single_particle_sort 3300010817 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_17_SCGC_AG-138-I04 DOE Joint Genome Institute (JGI) 3300010817 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 496525 564 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300035909 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_K7 DOE Joint Genome Institute (JGI) 3300035909 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 27075 46 0 0 0 0 SRX10045219 Unrestricted 0.0 single_particle_sort 3300023007 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - S2R-29 bacterium JGI MDM2 DC4-3-D8 DOE Joint Genome Institute (JGI) 3300023007 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 1660413 1581 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300071276 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_WGAX_D11_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071276 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 520650 602 2 0 2 0 Unrestricted 0.0 single_particle_sort 3300014990 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.E16 DOE Joint Genome Institute (JGI) 3300014990 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 177043 238 0 0 0 0 Restricted 0.0 single_particle_sort 3300036101 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_J19 DOE Joint Genome Institute (JGI) 3300036101 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 267573 332 0 0 0 0 SRX10046587 Unrestricted 0.0 single_particle_sort 3300019650 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown bacterium SCGC_AG-122-P19 DOE Joint Genome Institute (JGI) 3300019650 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 116170 137 0 0 0 0 SRX3902644 Unrestricted 0.0 single_particle_sort 3300041352 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.K8 DOE Joint Genome Institute (JGI) 3300041352 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1236842 1128 0 0 1 0 SRX9647058 Unrestricted 0.0 single_particle_sort 3300019940 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-D17 DOE Joint Genome Institute (JGI) 3300019940 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 46234 61 0 0 0 0 SRX4653781 Unrestricted 0.0 single_particle_sort 3300050785 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_E7_SVS DOE Joint Genome Institute (JGI) 3300050785 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 136880 182 0 0 0 0 Restricted 0.0 single_particle_sort 3300037997 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .I5 DOE Joint Genome Institute (JGI) 3300037997 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 1054533 1236 1 0 1 0 SRX9411506 Unrestricted 0.0 single_particle_sort 3300071243 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_edMDA_F09_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071243 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 524768 535 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300036001 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.K18 DOE Joint Genome Institute (JGI) 3300036001 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 1189670 1267 1 0 1 0 SRX8856749 Unrestricted 0.0 single_particle_sort 3300018194 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_F9 DOE Joint Genome Institute (JGI) 3300018194 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 423773 501 0 0 1 0 SRX4652714 Unrestricted 0.0 single_particle_sort 3300041316 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.I11 DOE Joint Genome Institute (JGI) 3300041316 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 450459 521 0 0 0 0 SRX9646792 Unrestricted 0.0 single_particle_sort 3300019563 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_C16 DOE Joint Genome Institute (JGI) 3300019563 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 46735 47 0 0 0 0 SRX4652583 Unrestricted 0.0 single_particle_sort 3300024657 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-F19 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024657 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 66406 91 0 0 0 0 0.0 single_particle_sort 3300018268 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-G14 DOE Joint Genome Institute (JGI) 3300018268 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 936261 939 1 0 1 0 SRX3981034 Unrestricted 0.0 single_particle_sort 3300018094 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_G17 DOE Joint Genome Institute (JGI) 3300018094 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 104537 108 0 0 0 0 SRX4646698 Unrestricted 0.0 single_particle_sort 3300024128 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Pseudomonas bacterium JGI PFNR15_J17 DOE Joint Genome Institute (JGI) 3300024128 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 285879 314 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300021188 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_G7 DOE Joint Genome Institute (JGI) 3300021188 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 453646 502 0 0 0 0 SRX5078495 Unrestricted 0.0 single_particle_sort 3300021723 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.E9 DOE Joint Genome Institute (JGI) 3300021723 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 432604 507 0 0 0 0 SRX4009941 Unrestricted 0.0 single_particle_sort 3300024783 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-J09 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024783 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 163305 213 0 0 0 0 0.0 single_particle_sort 3300035736 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.L13 DOE Joint Genome Institute (JGI) 3300035736 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1732858 1816 1 0 0 0 SRX8857425 Unrestricted 0.0 single_particle_sort 3300015965 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-274-E16 DOE Joint Genome Institute (JGI) 3300015965 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 391038 433 1 0 1 0 SRX3578255 Unrestricted 0.0 single_particle_sort 3300038035 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.05.F22 DOE Joint Genome Institute (JGI) 3300038035 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 214986 364 0 0 0 0 SRX9411215 Unrestricted 0.0 single_particle_sort 3300034707 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.1.K11 DOE Joint Genome Institute (JGI) 3300034707 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 1778964 1900 1 0 2 0 SRX8390425 Unrestricted 0.0 single_particle_sort 3300041374 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.H22 DOE Joint Genome Institute (JGI) 3300041374 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 719844 773 1 0 1 0 SRX9648628 Unrestricted 0.0 single_particle_sort 3300023867 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.N19 DOE Joint Genome Institute (JGI) 3300023867 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 689005 737 1 0 2 0 SRX4502641 Unrestricted 0.0 single_particle_sort 3300023635 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.K19 DOE Joint Genome Institute (JGI) 3300023635 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 82014 94 0 0 0 0 SRX4547990 Unrestricted 0.0 single_particle_sort 3300013304 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - Alkalimonas bacterium JGI ML_2_M13 DOE Joint Genome Institute (JGI) 3300013304 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 1940577 2020 2 0 2 0 SRX4062781 Unrestricted 0.0 single_particle_sort 3300041136 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.I6 DOE Joint Genome Institute (JGI) 3300041136 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 299095 311 0 0 0 0 SRX9668761 Unrestricted 0.0 single_particle_sort 3300038135 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.C15 DOE Joint Genome Institute (JGI) 3300038135 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 756509 914 0 0 1 0 SRX9411763 Unrestricted 0.0 single_particle_sort 3300015937 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-578-I11 DOE Joint Genome Institute (JGI) 3300015937 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 312020 389 0 0 0 0 SRX3579213 Unrestricted 0.0 single_particle_sort 3300016215 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-F19 DOE Joint Genome Institute (JGI) 3300016215 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 302884 380 0 0 0 0 SRX3562915 Unrestricted 0.0 single_particle_sort 3300051147 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_C4_SVS DOE Joint Genome Institute (JGI) 3300051147 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 187569 211 0 0 0 0 Restricted 0.0 single_particle_sort 3300038067 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.N17 DOE Joint Genome Institute (JGI) 3300038067 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 21895 25 0 0 0 0 SRX9411438 Unrestricted 0.0 single_particle_sort 3300018340 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-N23 DOE Joint Genome Institute (JGI) 3300018340 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1448889 1457 1 0 1 0 SRX3981305 Unrestricted 0.0 single_particle_sort 3300023835 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.H14 DOE Joint Genome Institute (JGI) 3300023835 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 536797 617 1 0 2 0 SRX4500687 Unrestricted 0.0 single_particle_sort 3300023667 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.K15 DOE Joint Genome Institute (JGI) 3300023667 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 5919050 6136 1 0 1 0 SRX4415635 Unrestricted 0.0 single_particle_sort 3300033326 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.F8 DOE Joint Genome Institute (JGI) 3300033326 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 257904 308 0 0 0 0 SRX7627280 Unrestricted 0.0 single_particle_sort 3300015217 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - unknown bacterium SCGC_AG-290-M08 DOE Joint Genome Institute (JGI) 3300015217 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 211414 290 0 0 0 0 SRX3578747 Unrestricted 0.0 single_particle_sort 3300023820 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.D19 DOE Joint Genome Institute (JGI) 3300023820 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 473167 534 1 0 0 0 SRX4524394 Unrestricted 0.0 single_particle_sort 3300019808 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-K9 DOE Joint Genome Institute (JGI) 3300019808 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 459510 495 0 0 0 0 SRX4663345 Unrestricted 0.0 single_particle_sort 3300071214 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_C05_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071214 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 3742104 4139 1 0 2 0 Unrestricted 0.0 single_particle_sort 3300024595 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-J18 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024595 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 38071 39 0 0 0 0 0.0 single_particle_sort 3300038120 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .N17 DOE Joint Genome Institute (JGI) 3300038120 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 56330 76 0 0 0 0 SRX9411665 Unrestricted 0.0 single_particle_sort 3300023466 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.H20 DOE Joint Genome Institute (JGI) 3300023466 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 1058765 1088 1 0 1 0 SRX4548439 Unrestricted 0.0 single_particle_sort 3300041103 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.C15 DOE Joint Genome Institute (JGI) 3300041103 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 785468 759 1 0 1 0 SRX9654411 Unrestricted 0.0 single_particle_sort 3300023620 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.J9 DOE Joint Genome Institute (JGI) 3300023620 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 1047180 1266 0 0 1 0 SRX4415432 Unrestricted 0.0 single_particle_sort 3300035831 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0815.Sybr.01.E17 DOE Joint Genome Institute (JGI) 3300035831 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 975052 1083 0 0 1 0 SRX8894440 Unrestricted 0.0 single_particle_sort 3300019608 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-N11 DOE Joint Genome Institute (JGI) 3300019608 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 60675 81 0 0 1 0 SRX3550858 Unrestricted 0.0 single_particle_sort 3300033588 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P9_P14 DOE Joint Genome Institute (JGI) 3300033588 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 6423 7 0 0 0 0 SRX7531543 Unrestricted 0.0 single_particle_sort 3300021795 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.D17 DOE Joint Genome Institute (JGI) 3300021795 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 45994 58 0 0 0 0 SRX3993601 Unrestricted 0.0 single_particle_sort 3300026593 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-O10 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026593 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 71545 97 0 0 0 0 0.0 single_particle_sort 3300038020 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.H11 DOE Joint Genome Institute (JGI) 3300038020 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 854082 1088 0 0 0 0 SRX9410979 Unrestricted 0.0 single_particle_sort 3300023768 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.C21 DOE Joint Genome Institute (JGI) 3300023768 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 217246 302 1 0 1 0 SRX4503127 Unrestricted 0.0 single_particle_sort 3300015594 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - Cytophagia bacterium JGI ML_2_I10 DOE Joint Genome Institute (JGI) 3300015594 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 1463870 1475 1 0 1 0 SRX4062782 Unrestricted 0.0 single_particle_sort 3300071181 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_edMDA_A06_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071181 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 983556 1110 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300022987 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - Fervidibacteria bacterium JGI MDM2 DC4-3-F11 DOE Joint Genome Institute (JGI) 3300022987 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 619021 747 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033196 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.N13 DOE Joint Genome Institute (JGI) 3300033196 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 384558 430 1 0 1 0 SRX7628764 Unrestricted 0.0 single_particle_sort 3300018440 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_J7 DOE Joint Genome Institute (JGI) 3300018440 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1167675 1184 0 0 0 0 SRX4652661 Unrestricted 0.0 single_particle_sort 3300024700 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-C14 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024700 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 105023 125 0 0 0 0 0.0 single_particle_sort 3300033860 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.D7 DOE Joint Genome Institute (JGI) 3300033860 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 484514 563 1 0 2 0 SRX7626214 Unrestricted 0.0 single_particle_sort 3300026586 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-O11 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026586 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 56953 84 0 0 0 0 0.0 single_particle_sort 3300034608 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.K9 DOE Joint Genome Institute (JGI) 3300034608 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1393025 1444 1 0 2 0 SRX8394724 Unrestricted 0.0 single_particle_sort 3300023972 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.L20 DOE Joint Genome Institute (JGI) 3300023972 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 1722359 1693 0 0 1 0 SRX4501424 Unrestricted 0.0 single_particle_sort 3300016509 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from underground thermal water from 5P borehole, Tomsk, Russia - Ignavibacteria_SCGC_AG-716-O10 DOE Joint Genome Institute (JGI) 3300016509 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole Groundwater 58.0758 82.8374 7.49-7.6 463207 421 0 0 0 0 SRX3783254 Unrestricted 0.0 single_particle_sort 3300033660 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P1_N13 DOE Joint Genome Institute (JGI) 3300033660 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 13030 18 0 0 0 0 SRX7530070 Unrestricted 0.0 single_particle_sort 3300024132 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Janthinobacterium bacterium JGI PFNR15_E21 DOE Joint Genome Institute (JGI) 3300024132 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 434675 520 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300016206 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-B19 DOE Joint Genome Institute (JGI) 3300016206 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 225670 288 0 0 0 0 SRX3562633 Unrestricted 0.0 single_particle_sort 3300037979 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.C17 DOE Joint Genome Institute (JGI) 3300037979 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 661069 803 0 0 0 0 SRX9411018 Unrestricted 0.0 single_particle_sort 3300023613 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.K11 DOE Joint Genome Institute (JGI) 3300023613 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 712950 891 0 0 0 0 SRX4415594 Unrestricted 0.0 single_particle_sort 3300038013 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.D8 DOE Joint Genome Institute (JGI) 3300038013 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 326391 397 0 0 0 0 SRX9410335 Unrestricted 0.0 single_particle_sort 3300023813 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.K5 DOE Joint Genome Institute (JGI) 3300023813 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 445203 500 0 0 0 0 SRX4525678 Unrestricted 0.0 single_particle_sort 3300023366 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.G4 DOE Joint Genome Institute (JGI) 3300023366 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 2224310 2130 1 0 1 0 SRX4548969 Unrestricted 0.0 single_particle_sort 3300038113 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .M16 DOE Joint Genome Institute (JGI) 3300038113 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 428121 622 0 0 0 0 SRX9411652 Unrestricted 0.0 single_particle_sort 3300019401 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16026 DOE Joint Genome Institute (JGI) 3300019401 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 1454578 1668 1 0 1 0 SRX3985681 Unrestricted 0.0 single_particle_sort 3300016233 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-G14 DOE Joint Genome Institute (JGI) 3300016233 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 398804 485 0 0 0 0 SRX3562925 Unrestricted 0.0 single_particle_sort 3300018159 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_G11 DOE Joint Genome Institute (JGI) 3300018159 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 783288 724 0 0 0 0 SRX4646899 Unrestricted 0.0 single_particle_sort 3300016414 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Microgenomates bacterium SCGC_AG-278-N07 DOE Joint Genome Institute (JGI) 3300016414 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 909141 1087 0 0 0 0 SRX3578424 Unrestricted 0.0 single_particle_sort 3300032375 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.N9 DOE Joint Genome Institute (JGI) 3300032375 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 1159702 1596 0 0 0 0 SRX6433663 Unrestricted 0.0 single_particle_sort 3300015147 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-E06 DOE Joint Genome Institute (JGI) 3300015147 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 684995 806 0 0 0 0 SRX3578320 Unrestricted 0.0 single_particle_sort 3300023155 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.I15 DOE Joint Genome Institute (JGI) 3300023155 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1625864 1651 2 0 1 0 SRX4511468 Unrestricted 0.0 single_particle_sort 3300050803 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_L9_SVS DOE Joint Genome Institute (JGI) 3300050803 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 17548 33 0 0 0 0 Restricted 0.0 single_particle_sort 3300015928 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-I22 DOE Joint Genome Institute (JGI) 3300015928 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 324073 382 0 0 0 0 SRX3563718 Unrestricted 0.0 single_particle_sort 3300019556 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-F08 DOE Joint Genome Institute (JGI) 3300019556 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 30215 44 0 0 1 0 SRX3560844 Unrestricted 0.0 single_particle_sort 3300010797 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_27_SCGC_AG-138-K08 DOE Joint Genome Institute (JGI) 3300010797 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 363669 427 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300019423 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16039 DOE Joint Genome Institute (JGI) 3300019423 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 2326200 2541 1 0 1 0 SRX3987081 Unrestricted 0.0 single_particle_sort 3300041612 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.2.N15 DOE Joint Genome Institute (JGI) 3300041612 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 700544 790 0 0 0 0 SRX14833242 Unrestricted 0.0 single_particle_sort 3300014334 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.G04 DOE Joint Genome Institute (JGI) 3300014334 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1016961 1239 1 0 1 0 SRX3298951 Unrestricted 0.0 single_particle_sort 3300016045 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-I08 DOE Joint Genome Institute (JGI) 3300016045 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 406199 528 0 0 0 0 SRX3563720 Unrestricted 0.0 single_particle_sort 3300024605 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-J05 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024605 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 41467 48 0 0 0 0 0.0 single_particle_sort 3300026603 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-C05 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026603 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 76705 88 0 0 0 0 0.0 single_particle_sort 3300050836 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_H4_SVS DOE Joint Genome Institute (JGI) 3300050836 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 39180 52 0 0 0 0 Restricted 0.0 single_particle_sort 3300019512 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from Echinus Geyser water, Yellowstone National Park, Wyoming, United States - Nanoarchaeum sp. JGI 000156CP-F13 DOE Joint Genome Institute (JGI) 3300019512 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Acidic hot water 44.7225 -110.7014 890166 1139 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300041391 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.G5 DOE Joint Genome Institute (JGI) 3300041391 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1666741 1812 1 0 1 0 SRX9646165 Unrestricted 0.0 single_particle_sort 3300016145 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-274-A17 DOE Joint Genome Institute (JGI) 3300016145 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 604866 649 1 0 0 0 SRX3578235 Unrestricted 0.0 single_particle_sort 3300019598 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-C05 DOE Joint Genome Institute (JGI) 3300019598 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 62814 74 0 0 0 0 SRX3550863 Unrestricted 0.0 single_particle_sort 3300033765 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_A8 DOE Joint Genome Institute (JGI) 3300033765 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 11226 24 0 0 0 0 SRX7525345 Unrestricted 0.0 single_particle_sort 3300024805 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-P02 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024805 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 194991 258 0 0 0 0 0.0 single_particle_sort 3300018293 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Lentisphaerae_bacterium_SCGC_AG-650-G02 DOE Joint Genome Institute (JGI) 3300018293 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1083999 1059 1 0 1 0 SRX3979774 Unrestricted 0.0 single_particle_sort 3300024652 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-B06 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024652 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 73617 86 0 0 0 0 0.0 single_particle_sort 3300041275 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.M17 DOE Joint Genome Institute (JGI) 3300041275 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 797279 999 0 0 1 0 SRX9677222 Unrestricted 0.0 single_particle_sort 3300024711 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-L11 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024711 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 110313 134 0 0 0 0 0.0 single_particle_sort 3300036095 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_J18 DOE Joint Genome Institute (JGI) 3300036095 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 264671 336 0 0 0 0 SRX10046523 Unrestricted 0.0 single_particle_sort 3300035460 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_K11 DOE Joint Genome Institute (JGI) 3300035460 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 176052 210 0 0 0 0 SRX9539549 Unrestricted 0.0 single_particle_sort 3300034423 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.I19 DOE Joint Genome Institute (JGI) 3300034423 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 440767 471 0 0 1 0 SRX8389147 Unrestricted 0.0 single_particle_sort 3300023585 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.I5 DOE Joint Genome Institute (JGI) 3300023585 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 249887 257 0 0 0 0 SRX4547917 Unrestricted 0.0 single_particle_sort 3300035826 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0815.Sybr.01.C19 DOE Joint Genome Institute (JGI) 3300035826 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 196922 221 0 0 0 0 SRX8894248 Unrestricted 0.0 single_particle_sort 3300032475 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.K15 DOE Joint Genome Institute (JGI) 3300032475 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 1718763 1612 1 0 1 0 SRX6426219 Unrestricted 0.0 single_particle_sort 3300018286 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-P20 DOE Joint Genome Institute (JGI) 3300018286 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1187761 1107 0 0 0 0 SRX3974903 Unrestricted 0.0 single_particle_sort 3300023725 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.05.G5 DOE Joint Genome Institute (JGI) 3300023725 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 20464 34 0 0 0 0 SRX4390954 Unrestricted 0.0 single_particle_sort 3300038243 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.J15 DOE Joint Genome Institute (JGI) 3300038243 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 327571 322 0 0 0 0 SRX9411115 Unrestricted 0.0 single_particle_sort 3300016314 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-J14 DOE Joint Genome Institute (JGI) 3300016314 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 666507 767 0 0 0 0 SRX3560708 Unrestricted 0.0 single_particle_sort 3300015804 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-D16 DOE Joint Genome Institute (JGI) 3300015804 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 235270 267 0 0 0 0 SRX3560639 Unrestricted 0.0 single_particle_sort 3300034598 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.D5 DOE Joint Genome Institute (JGI) 3300034598 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 541577 604 0 0 0 0 SRX8394706 Unrestricted 0.0 single_particle_sort 3300021690 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.F19 DOE Joint Genome Institute (JGI) 3300021690 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 238159 305 0 0 0 0 SRX4009716 Unrestricted 0.0 single_particle_sort 3300048755 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_E18_SVS DOE Joint Genome Institute (JGI) 3300048755 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 225127 311 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033331 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.C10 DOE Joint Genome Institute (JGI) 3300033331 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 590830 676 0 0 0 0 SRX7627522 Unrestricted 0.0 single_particle_sort 3300041357 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.M6 DOE Joint Genome Institute (JGI) 3300041357 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 812597 794 0 0 0 0 SRX9647199 Unrestricted 0.0 single_particle_sort 3300024616 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-N20 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024616 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 44806 57 0 0 0 0 0.0 single_particle_sort 3300033838 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.F21 DOE Joint Genome Institute (JGI) 3300033838 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 362519 410 1 0 1 0 SRX7630455 Unrestricted 0.0 single_particle_sort 3300071315 *Microbiome Permanent Draft Comparing whole genome amplification chemistries for bacterial single cell genomics Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - scBac_WGAX_EnviBac_sc_well7D_S100 Stanford University 3300071315 Metagenome - Single Particle Sort Spades v. 3.15.3 released per request -- IMGSUPP-4358 No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 176298 195 0 0 0 0 0.0 single_particle_sort 3300010812 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_2_SCGC_AG-159-A08 DOE Joint Genome Institute (JGI) 3300010812 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 426604 518 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300023002 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - S2R-29 bacterium JGI MDM2 DC4-3-N22 DOE Joint Genome Institute (JGI) 3300023002 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 1683035 1607 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023730 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.L14 DOE Joint Genome Institute (JGI) 3300023730 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 46510 51 0 0 0 0 SRX4548278 Unrestricted 0.0 single_particle_sort 3300022250 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Acetothermia_bacterium_SCGC_AH-147-K18 Bigelow Laboratory for Ocean Sciences 3300022250 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 193787 241 1 0 0 0 0.0 single_particle_sort 3300041121 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.G11 DOE Joint Genome Institute (JGI) 3300041121 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1120034 1203 0 0 0 0 SRX9668530 Unrestricted 0.0 single_particle_sort 3300015571 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-B08 DOE Joint Genome Institute (JGI) 3300015571 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 627548 765 0 0 0 0 SRX3556432 Unrestricted 0.0 single_particle_sort 3300023999 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.J13 DOE Joint Genome Institute (JGI) 3300023999 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 2278690 2447 1 0 1 0 SRX4523920 Unrestricted 0.0 single_particle_sort 3300014434 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.J12 DOE Joint Genome Institute (JGI) 3300014434 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 910449 972 1 0 0 0 SRX3367722 Unrestricted 0.0 single_particle_sort 3300024363 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Burkholderia bacterium JGI PFNR15_K9 DOE Joint Genome Institute (JGI) 3300024363 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 28416 32 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300019410 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16012 DOE Joint Genome Institute (JGI) 3300019410 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 1790596 1971 1 0 1 0 SRX3985656 Unrestricted 0.0 single_particle_sort 3300010751 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_28_SCGC_AG-138-K10 DOE Joint Genome Institute (JGI) 3300010751 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 145649 193 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300037992 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.G9 DOE Joint Genome Institute (JGI) 3300037992 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 737690 975 0 0 0 0 SRX9411379 Unrestricted 0.0 single_particle_sort 3300034556 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.D16 DOE Joint Genome Institute (JGI) 3300034556 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1407584 1461 0 0 1 0 SRX8393326 Unrestricted 0.0 single_particle_sort 3300037918 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.E18 DOE Joint Genome Institute (JGI) 3300037918 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 613956 729 0 0 0 0 SRX9410364 Unrestricted 0.0 single_particle_sort 3300035721 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_J15 DOE Joint Genome Institute (JGI) 3300035721 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 35782 49 0 0 0 0 SRX10045722 Unrestricted 0.0 single_particle_sort 3300023353 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.I6 DOE Joint Genome Institute (JGI) 3300023353 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1524333 1470 1 0 1 0 SRX4519736 Unrestricted 0.0 single_particle_sort 3300036023 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.C9 DOE Joint Genome Institute (JGI) 3300036023 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 244647 263 0 0 0 0 SRX8857990 Unrestricted 0.0 single_particle_sort 3300021606 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.N10 DOE Joint Genome Institute (JGI) 3300021606 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 21374 25 0 0 0 0 SRX4009948 Unrestricted 0.0 single_particle_sort 3300022961 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.K5 DOE Joint Genome Institute (JGI) 3300022961 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 157563 198 0 0 0 0 SRX4419803 Unrestricted 0.0 single_particle_sort 3300033269 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, Ontario, Canada - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.D6 DOE Joint Genome Institute (JGI) 3300033269 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 125491 148 0 0 0 0 SRX7630687 Unrestricted 0.0 single_particle_sort 3300024674 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-L22 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024674 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 76889 102 0 0 0 0 0.0 single_particle_sort 3300032578 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.N4 DOE Joint Genome Institute (JGI) 3300032578 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 526380 560 1 0 0 0 SRX6431200 Unrestricted 0.0 single_particle_sort 3300021806 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.I6 DOE Joint Genome Institute (JGI) 3300021806 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 705627 739 1 0 0 0 SRX3989573 Unrestricted 0.0 single_particle_sort 3300023793 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.K18 DOE Joint Genome Institute (JGI) 3300023793 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 364572 402 0 0 0 0 SRX4523196 Unrestricted 0.0 single_particle_sort 3300024874 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR46.Redo.05.E7 DOE Joint Genome Institute (JGI) 3300024874 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.242 21.4899 31320 42 0 0 0 0 SRX4391215 Unrestricted 0.0 single_particle_sort 3300034702 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.1.M19 DOE Joint Genome Institute (JGI) 3300034702 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 1644585 1795 1 0 1 0 SRX8390422 Unrestricted 0.0 single_particle_sort 3300023862 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.F20 DOE Joint Genome Institute (JGI) 3300023862 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 638404 737 0 0 0 0 SRX4519615 Unrestricted 0.0 single_particle_sort 3300021701 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.F11 DOE Joint Genome Institute (JGI) 3300021701 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 403046 390 0 0 0 0 SRX4009952 Unrestricted 0.0 single_particle_sort 3300050880 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_E18_SVS DOE Joint Genome Institute (JGI) 3300050880 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 17441 21 0 0 0 0 Restricted 0.0 single_particle_sort 3300016134 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-F09 DOE Joint Genome Institute (JGI) 3300016134 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 524419 639 0 0 0 0 SRX3548481 Unrestricted 0.0 single_particle_sort 3300021633 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.D5 DOE Joint Genome Institute (JGI) 3300021633 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 46622 81 0 0 0 0 SRX4008833 Unrestricted 0.0 single_particle_sort 3300038214 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.E10 DOE Joint Genome Institute (JGI) 3300038214 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 705110 765 1 0 1 0 SRX9411054 Unrestricted 0.0 single_particle_sort 3300015559 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown archaeum SCGC_AG-122-D06 DOE Joint Genome Institute (JGI) 3300015559 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 589812 692 0 0 0 0 SRX3571931 Unrestricted 0.0 single_particle_sort 3300016343 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Thaumarchaeota archaeum SCGC_AG-657-E19 DOE Joint Genome Institute (JGI) 3300016343 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 643404 825 0 0 0 0 SRX3594354 Unrestricted 0.0 single_particle_sort 3300022139 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.D18 DOE Joint Genome Institute (JGI) 3300022139 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 3792150 3429 1 0 1 0 SRX3997828 Unrestricted 0.0 single_particle_sort 3300010779 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_4_SCGC_AG-159-B02 DOE Joint Genome Institute (JGI) 3300010779 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 305338 344 1 0 2 0 Unrestricted 0.0 single_particle_sort 3300021833 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.G17 DOE Joint Genome Institute (JGI) 3300021833 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1850156 2011 1 0 1 0 SRX3989458 Unrestricted 0.0 single_particle_sort 3300016034 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown bacterium SCGC_AG-657-I07 DOE Joint Genome Institute (JGI) 3300016034 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 471431 512 0 0 0 0 SRX3779628 Unrestricted 0.0 single_particle_sort 3300033970 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.C17 DOE Joint Genome Institute (JGI) 3300033970 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 487101 561 1 0 1 0 SRX7630391 Unrestricted 0.0 single_particle_sort 3300016376 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-L21 DOE Joint Genome Institute (JGI) 3300016376 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 772626 879 1 0 0 0 SRX3563927 Unrestricted 0.0 single_particle_sort 3300015932 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-G22 DOE Joint Genome Institute (JGI) 3300015932 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 309544 387 0 0 1 0 SRX3563251 Unrestricted 0.0 single_particle_sort 3300051142 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_B11_SVS DOE Joint Genome Institute (JGI) 3300051142 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 21390 18 0 0 0 0 Restricted 0.0 single_particle_sort 3300022039 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Atribacteria bacterium JGI MDM2 LBsed72-1-J22 DOE Joint Genome Institute (JGI) 3300022039 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment freshwater sediment 53.7598 107.9791 1771907 1843 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300019395 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent sediment, Guaymas Basin, Mexico - 6U_4868_13_27 DOE Joint Genome Institute (JGI) 3300019395 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.001 -110.5999 1177423 1490 0 0 0 0 SRX3974126 Unrestricted 0.0 single_particle_sort 3300038062 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.J7 DOE Joint Genome Institute (JGI) 3300038062 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 223541 258 1 0 1 0 SRX9411435 Unrestricted 0.0 single_particle_sort 3300018230 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - archaeum_unknown_SCGC_AG-650-J19 DOE Joint Genome Institute (JGI) 3300018230 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 560794 677 1 0 1 0 SRX3980731 Unrestricted 0.0 single_particle_sort 3300038181 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.L17 DOE Joint Genome Institute (JGI) 3300038181 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 436063 516 0 0 1 0 SRX9411803 Unrestricted 0.0 single_particle_sort 3300021615 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.C10 DOE Joint Genome Institute (JGI) 3300021615 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 41745 42 0 0 0 0 SRX4009951 Unrestricted 0.0 single_particle_sort 3300023881 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.C18 DOE Joint Genome Institute (JGI) 3300023881 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 717280 814 0 0 0 0 SRX4549397 Unrestricted 0.0 single_particle_sort 3300034755 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.1.K18 DOE Joint Genome Institute (JGI) 3300034755 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 1983909 2065 1 0 1 0 SRX8390379 Unrestricted 0.0 single_particle_sort 3300036753 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.F21.redo DOE Joint Genome Institute (JGI) 3300036753 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 794902 928 1 0 0 0 SRX8910345 Unrestricted 0.0 single_particle_sort 3300018171 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_B22 DOE Joint Genome Institute (JGI) 3300018171 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 935079 908 0 0 0 0 SRX4650563 Unrestricted 0.0 single_particle_sort 3300036010 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.J15 DOE Joint Genome Institute (JGI) 3300036010 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 733716 826 0 0 0 0 SRX8857759 Unrestricted 0.0 single_particle_sort 3300038081 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .G9 DOE Joint Genome Institute (JGI) 3300038081 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 494596 586 0 0 0 0 SRX9411532 Unrestricted 0.0 single_particle_sort 3300021815 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.K11 DOE Joint Genome Institute (JGI) 3300021815 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 958834 1136 1 0 1 0 SRX3989567 Unrestricted 0.0 single_particle_sort 3300023453 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.H16 DOE Joint Genome Institute (JGI) 3300023453 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 40566 44 0 0 0 0 SRX4548458 Unrestricted 0.0 single_particle_sort 3300015675 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Gongxiaoshe hot spring sediment, Tengchong, China - GXS.2.2014 1201 MDM2 GXS p2 16S.E22.double-seq DOE Joint Genome Institute (JGI) 3300015675 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 25.4401 98.4408 1477619 1397 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035885 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.G15 DOE Joint Genome Institute (JGI) 3300035885 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1022043 1095 1 0 1 0 SRX8857416 Unrestricted 0.0 single_particle_sort 3300019495 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Roseibacterium sp. HL7711_P4H5 JGI 000149CP-E10 DOE Joint Genome Institute (JGI) 3300019495 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 354789 411 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023526 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.I18 DOE Joint Genome Institute (JGI) 3300023526 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 675008 791 2 0 2 0 SRX4500712 Unrestricted 0.0 single_particle_sort 3300014445 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.C11 DOE Joint Genome Institute (JGI) 3300014445 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1008302 1259 0 0 1 0 SRX3298870 Unrestricted 0.0 single_particle_sort 3300041204 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.L11 DOE Joint Genome Institute (JGI) 3300041204 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 157980 161 0 0 0 0 SRX9657101 Unrestricted 0.0 single_particle_sort 3300022982 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.K10 DOE Joint Genome Institute (JGI) 3300022982 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 743144 887 0 0 0 0 SRX4416561 Unrestricted 0.0 single_particle_sort 3300015875 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-E15 DOE Joint Genome Institute (JGI) 3300015875 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 217809 254 0 0 0 0 SRX3542756 Unrestricted 0.0 single_particle_sort 3300024065 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.J16 DOE Joint Genome Institute (JGI) 3300024065 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 235227 260 0 0 0 0 SRX4389720 Unrestricted 0.0 single_particle_sort 3300023786 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.J20 DOE Joint Genome Institute (JGI) 3300023786 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 273590 338 0 0 0 0 SRX4548205 Unrestricted 0.0 single_particle_sort 3300018225 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_B15 DOE Joint Genome Institute (JGI) 3300018225 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 697586 721 1 0 0 0 SRX4632498 Unrestricted 0.0 single_particle_sort 3300023977 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.M10 DOE Joint Genome Institute (JGI) 3300023977 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1791770 1817 0 0 0 0 SRX4521638 Unrestricted 0.0 single_particle_sort 3300033284 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.H13 DOE Joint Genome Institute (JGI) 3300033284 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 683533 753 0 0 1 0 SRX7630607 Unrestricted 0.0 single_particle_sort 3300026591 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-O05 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026591 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 53344 58 0 0 0 0 0.0 single_particle_sort 3300026610 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-L17 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026610 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 133646 158 0 0 0 0 0.0 single_particle_sort 3300035833 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0815.Sybr.01.F7 DOE Joint Genome Institute (JGI) 3300035833 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 427888 528 0 0 0 0 SRX8894455 Unrestricted 0.0 single_particle_sort 3300041101 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.D10 DOE Joint Genome Institute (JGI) 3300041101 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 507493 509 0 0 0 0 SRX9654413 Unrestricted 0.0 single_particle_sort 3300023418 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.D11 DOE Joint Genome Institute (JGI) 3300023418 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 1263457 1319 0 0 0 0 SRX4548817 Unrestricted 0.0 single_particle_sort 3300071196 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_edMDA_E05_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071196 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 667814 691 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023122 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.L14 DOE Joint Genome Institute (JGI) 3300023122 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 873342 911 1 0 1 0 SRX4509055 Unrestricted 0.0 single_particle_sort 3300035272 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_H9 DOE Joint Genome Institute (JGI) 3300035272 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 226671 290 1 0 1 0 SRX9538042 Unrestricted 0.0 single_particle_sort 3300033597 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.K10 DOE Joint Genome Institute (JGI) 3300033597 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 322479 382 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300050810 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_O23_SVS DOE Joint Genome Institute (JGI) 3300050810 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 55570 65 0 0 0 0 Restricted 0.0 single_particle_sort 3300049936 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_E11_SVS DOE Joint Genome Institute (JGI) 3300049936 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 44904 57 0 0 0 0 Restricted 0.0 single_particle_sort 3300035806 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Sorted cell/s from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_H21 DOE Joint Genome Institute (JGI) 3300035806 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 43028 54 0 0 0 0 SRX8783623 Unrestricted 0.0 single_particle_sort 3300041240 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.F12 DOE Joint Genome Institute (JGI) 3300041240 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 874366 875 0 0 0 0 SRX9653936 Unrestricted 0.0 single_particle_sort 3300015624 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from a deep sea mud volcano in Anaximander Mountains, Eastern Mediterranean Sea - B25.2.2014 1114 MDM2 B25 p2 16S.L9.double-peak DOE Joint Genome Institute (JGI) 3300015624 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Mud volcano Marine Unclassified Deep sea volcano 35.3338 30.2722 256123 257 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300034637 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.I16 DOE Joint Genome Institute (JGI) 3300034637 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1501121 1555 1 0 0 0 SRX8390603 Unrestricted 0.0 single_particle_sort 3300018274 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Planctomycetacia_bacterium_SCGC_AG-650-O02 DOE Joint Genome Institute (JGI) 3300018274 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1130489 970 1 0 1 0 SRX3979777 Unrestricted 0.0 single_particle_sort 3300015824 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown bacterium SCGC_AG-657-G14 DOE Joint Genome Institute (JGI) 3300015824 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 284566 316 0 0 0 0 SRX3623508 Unrestricted 0.0 single_particle_sort 3300019403 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16041 DOE Joint Genome Institute (JGI) 3300019403 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 1472121 1692 1 0 1 0 SRX3987085 Unrestricted 0.0 single_particle_sort 3300016070 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-F22 DOE Joint Genome Institute (JGI) 3300016070 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 458076 551 1 0 0 0 SRX3563253 Unrestricted 0.0 single_particle_sort 3300038111 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .D22 DOE Joint Genome Institute (JGI) 3300038111 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 295109 382 0 0 0 0 SRX9411637 Unrestricted 0.0 single_particle_sort 3300019665 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-F18 DOE Joint Genome Institute (JGI) 3300019665 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 233933 238 0 0 0 0 SRX3959912 Unrestricted 0.0 single_particle_sort 3300036617 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.L11 DOE Joint Genome Institute (JGI) 3300036617 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 2804006 3182 1 0 1 0 SRX8902813 Unrestricted 0.0 single_particle_sort 3300016231 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Peregrinibacteria bacterium SCGC_AG-278-O17 DOE Joint Genome Institute (JGI) 3300016231 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 455164 468 1 0 0 0 SRX3578495 Unrestricted 0.0 single_particle_sort 3300022956 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.G19 DOE Joint Genome Institute (JGI) 3300022956 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 176652 233 1 0 1 0 SRX4454611 Unrestricted 0.0 single_particle_sort 3300023811 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.K12 DOE Joint Genome Institute (JGI) 3300023811 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 412519 480 0 0 0 0 SRX4548063 Unrestricted 0.0 single_particle_sort 3300021685 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.F12 DOE Joint Genome Institute (JGI) 3300021685 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 244296 310 0 0 0 0 SRX4005538 Unrestricted 0.0 single_particle_sort 3300024625 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-O03 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024625 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 46723 62 0 0 0 0 0.0 single_particle_sort 3300033934 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.K19 DOE Joint Genome Institute (JGI) 3300033934 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 573555 605 1 0 1 0 SRX7630459 Unrestricted 0.0 single_particle_sort 3300022646 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Methanomicrobiales archaeon JGI PCGPRD042217_32 DOE Joint Genome Institute (JGI) 3300022646 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 8430411 10325 0 1 1 0 SRX4415249 Unrestricted 0.0 single_particle_sort 3300023318 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.K11 DOE Joint Genome Institute (JGI) 3300023318 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 168094 182 0 0 0 0 SRX4548976 Unrestricted 0.0 single_particle_sort 3300036080 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_I13 DOE Joint Genome Institute (JGI) 3300036080 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 104807 142 0 0 0 0 SRX10046315 Unrestricted 0.0 single_particle_sort 3300019637 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-F07 DOE Joint Genome Institute (JGI) 3300019637 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 115726 119 0 0 0 0 SRX3902981 Unrestricted 0.0 single_particle_sort 3300038011 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.G20 DOE Joint Genome Institute (JGI) 3300038011 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 514386 626 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300016170 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG_AG-578-P14 DOE Joint Genome Institute (JGI) 3300016170 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 623220 694 1 0 0 0 SRX3579701 Unrestricted 0.0 single_particle_sort 3300023611 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.C7 DOE Joint Genome Institute (JGI) 3300023611 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 737591 849 0 0 1 0 SRX4415437 Unrestricted 0.0 single_particle_sort 3300024825 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-B11 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024825 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 264582 339 0 0 0 0 0.0 single_particle_sort 3300023590 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.J20 DOE Joint Genome Institute (JGI) 3300023590 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 367786 375 0 0 0 0 SRX4548012 Unrestricted 0.0 single_particle_sort 3300038269 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.05.C16 DOE Joint Genome Institute (JGI) 3300038269 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 20044 22 0 0 0 0 SRX9411252 Unrestricted 0.0 single_particle_sort 3300023752 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.J18 DOE Joint Genome Institute (JGI) 3300023752 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 134220 166 0 0 0 0 SRX4548269 Unrestricted 0.0 single_particle_sort 3300035815 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0914.Sybr.03.D6 DOE Joint Genome Institute (JGI) 3300035815 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.95 554306 545 0 0 0 0 SRX8896774 Unrestricted 0.0 single_particle_sort 3300019436 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16047 DOE Joint Genome Institute (JGI) 3300019436 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 2378841 2725 1 0 2 0 SRX3987255 Unrestricted 0.0 single_particle_sort 3300032340 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.C4 DOE Joint Genome Institute (JGI) 3300032340 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 250591 298 1 0 1 0 SRX6433528 Unrestricted 0.0 single_particle_sort 3300024830 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-M05 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024830 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 289651 386 0 0 0 0 0.0 single_particle_sort 3300034738 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.1.G20 DOE Joint Genome Institute (JGI) 3300034738 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 1503977 1637 1 0 1 0 SRX8390258 Unrestricted 0.0 single_particle_sort 3300032639 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.N9 DOE Joint Genome Institute (JGI) 3300032639 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 399327 491 1 0 0 0 SRX6430697 Unrestricted 0.0 single_particle_sort 3300048722 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 159_C10_SVS DOE Joint Genome Institute (JGI) 3300048722 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 44042 55 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015019 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.C21 DOE Joint Genome Institute (JGI) 3300015019 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 328119 396 1 0 1 0 Restricted 0.0 single_particle_sort 3300022998 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - GAL08 bacterium JGI MDM2 DC4-3-K4 DOE Joint Genome Institute (JGI) 3300022998 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org; ruhl.ilona@gmail.com Ramunas Stepanauskas; Ilona Ruhl No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 1396773 1387 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300032542 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.I17 DOE Joint Genome Institute (JGI) 3300032542 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 317212 320 1 0 1 0 SRX6431208 Unrestricted 0.0 single_particle_sort 3300050823 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_C23_SVS DOE Joint Genome Institute (JGI) 3300050823 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 112908 165 0 0 0 0 Restricted 0.0 single_particle_sort 3300024630 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-E03 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024630 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 54650 62 1 0 1 0 0.0 single_particle_sort 3300015908 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-D21 DOE Joint Genome Institute (JGI) 3300015908 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 272463 362 0 0 0 0 SRX3563233 Unrestricted 0.0 single_particle_sort 3300071183 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_edMDA_C06_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071183 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 661030 692 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015119 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - unknown bacterium SCGC_AG-290-G03 DOE Joint Genome Institute (JGI) 3300015119 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 399181 487 0 0 1 0 SRX3578561 Unrestricted 0.0 single_particle_sort 3300033214 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.G14 DOE Joint Genome Institute (JGI) 3300033214 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 326528 354 0 0 0 0 SRX7629012 Unrestricted 0.0 single_particle_sort 3300014470 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.B11 DOE Joint Genome Institute (JGI) 3300014470 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1345098 1619 1 0 2 0 SRX3298783 Unrestricted 0.0 single_particle_sort 3300041224 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.H9 DOE Joint Genome Institute (JGI) 3300041224 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 923590 969 1 0 1 0 SRX9653288 Unrestricted 0.0 single_particle_sort 3300015950 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Microgenometes bacterium SCGC_AG-274-N08 DOE Joint Genome Institute (JGI) 3300015950 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 334584 415 1 0 0 0 SRX3578297 Unrestricted 0.0 single_particle_sort 3300024387 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Pseudomonas bacterium JGI PFNR15_M17 DOE Joint Genome Institute (JGI) 3300024387 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 191370 230 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300024693 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-N14 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024693 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 88495 118 0 0 0 0 0.0 single_particle_sort 3300033243 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.I14 DOE Joint Genome Institute (JGI) 3300033243 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 937381 864 0 0 0 0 SRX7630600 Unrestricted 0.0 single_particle_sort 3300015640 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from a deep sea mud volcano in Anaximander Mountains, Eastern Mediterranean Sea - B17.2.2014 11 14 MDM2 B17 p2 16S.D8.double-seq DOE Joint Genome Institute (JGI) 3300015640 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Mud volcano Marine Unclassified Deep sea volcano 35.7369 30.475 472901 592 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033579 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_L18 DOE Joint Genome Institute (JGI) 3300033579 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 27448 41 0 0 0 0 SRX7528831 Unrestricted 0.0 single_particle_sort 3300023774 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.J11 DOE Joint Genome Institute (JGI) 3300023774 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 231323 279 0 0 0 0 SRX4549817 Unrestricted 0.0 single_particle_sort 3300018205 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-I14 DOE Joint Genome Institute (JGI) 3300018205 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 473846 510 0 0 0 0 SRX3978576 Unrestricted 0.0 single_particle_sort 3300015840 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-F06 DOE Joint Genome Institute (JGI) 3300015840 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 227141 343 0 0 1 0 SRX3563250 Unrestricted 0.0 single_particle_sort 3300016369 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-M11 DOE Joint Genome Institute (JGI) 3300016369 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 728738 872 0 0 0 0 SRX3560739 Unrestricted 0.0 single_particle_sort 3300024762 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-J19 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024762 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 135363 182 0 0 0 0 0.0 single_particle_sort 3300034561 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.D20 DOE Joint Genome Institute (JGI) 3300034561 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 308513 319 0 0 0 0 SRX8393454 Unrestricted 0.0 single_particle_sort 3300010766 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_4_SCGC_AG-138-B20 DOE Joint Genome Institute (JGI) 3300010766 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 213563 254 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300037953 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.G13 DOE Joint Genome Institute (JGI) 3300037953 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 1051807 1191 1 0 1 0 SRX9410996 Unrestricted 0.0 single_particle_sort 3300023138 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.K22 DOE Joint Genome Institute (JGI) 3300023138 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 591895 607 1 0 1 0 SRX4509053 Unrestricted 0.0 single_particle_sort 3300050895 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_I16_SVS DOE Joint Genome Institute (JGI) 3300050895 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 43688 59 0 0 0 0 Restricted 0.0 single_particle_sort 3300019582 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-J16 DOE Joint Genome Institute (JGI) 3300019582 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 53671 65 0 0 0 0 SRX3560327 Unrestricted 0.0 single_particle_sort 3300033855 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.I6 DOE Joint Genome Institute (JGI) 3300033855 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 165456 207 0 0 0 0 SRX7626203 Unrestricted 0.0 single_particle_sort 3300034722 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.3.J13 DOE Joint Genome Institute (JGI) 3300034722 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 524437 559 1 0 1 0 SRX8390598 Unrestricted 0.0 single_particle_sort 3300024781 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-L18 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024781 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 172690 215 0 0 0 0 0.0 single_particle_sort 3300048738 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_E20_SVS DOE Joint Genome Institute (JGI) 3300048738 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 152770 209 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300021721 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.G16 DOE Joint Genome Institute (JGI) 3300021721 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 499712 491 0 0 0 0 SRX3990303 Unrestricted 0.0 single_particle_sort 3300036036 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_I21 DOE Joint Genome Institute (JGI) 3300036036 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 40345 55 0 0 0 0 SRX10076519 Unrestricted 0.0 single_particle_sort 3300037377 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.M15.redo DOE Joint Genome Institute (JGI) 3300037377 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 1010910 1162 0 0 0 0 SRX9402813 Unrestricted 0.0 single_particle_sort 3300021097 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted archaeal cell/s from hot spring water in Nymph Lake, Yellowstone National Park, Wyoming, USA - Nanoarchaeota archaeon AD-903-B22 Oregon State University 3300021097 Metagenome - Single Particle Sort Spades v2.2.1 Manuscript to be submitted soon No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring water 44.75187 -110.7288 366447 469 0 0 0 0 0.0 single_particle_sort 3300023515 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.J8 DOE Joint Genome Institute (JGI) 3300023515 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 251458 297 1 0 0 0 SRX4548392 Unrestricted 0.0 single_particle_sort 3300041368 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.N5 DOE Joint Genome Institute (JGI) 3300041368 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 39277 39 0 0 0 0 SRX9648549 Unrestricted 0.0 single_particle_sort 3300019561 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-E14 DOE Joint Genome Institute (JGI) 3300019561 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 36345 48 0 0 0 0 SRX3562606 Unrestricted 0.0 single_particle_sort 3300033655 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_H12 DOE Joint Genome Institute (JGI) 3300033655 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 6983 7 0 0 0 0 SRX7529895 Unrestricted 0.0 single_particle_sort 3300018216 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_F7 DOE Joint Genome Institute (JGI) 3300018216 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 524350 602 0 0 0 0 SRX4652587 Unrestricted 0.0 single_particle_sort 3300033945 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.F13 DOE Joint Genome Institute (JGI) 3300033945 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 167884 204 0 0 0 0 SRX7626286 Unrestricted 0.0 single_particle_sort 3300016384 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Microgenometes bacterium SCGC_AG-274-A10 DOE Joint Genome Institute (JGI) 3300016384 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 840787 916 1 0 1 0 SRX3578232 Unrestricted 0.0 single_particle_sort 3300034582 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.K7 DOE Joint Genome Institute (JGI) 3300034582 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1746879 1796 1 0 1 0 SRX8394449 Unrestricted 0.0 single_particle_sort 3300015439 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-M20 DOE Joint Genome Institute (JGI) 3300015439 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 109319 127 0 0 0 0 SRX3560350 Unrestricted 0.0 single_particle_sort 3300036003 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.D7 DOE Joint Genome Institute (JGI) 3300036003 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 944267 1015 0 0 0 0 SRX8856766 Unrestricted 0.0 single_particle_sort 3300021626 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.J16 DOE Joint Genome Institute (JGI) 3300021626 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 39954 55 0 0 0 0 SRX4006796 Unrestricted 0.0 single_particle_sort 3300024686 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-P20 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024686 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 91972 112 0 0 0 0 0.0 single_particle_sort 3300071241 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_edMDA_E08_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071241 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 381989 356 0 0 2 0 Unrestricted 0.0 single_particle_sort 3300018252 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - archaeum_unknown_SCGC_AG-650-D21 DOE Joint Genome Institute (JGI) 3300018252 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 745642 776 1 0 1 0 SRX3979970 Unrestricted 0.0 single_particle_sort 3300036103 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_N19 DOE Joint Genome Institute (JGI) 3300036103 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 213695 272 0 0 0 0 SRX10046605 Unrestricted 0.0 single_particle_sort 3300021826 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.C17 DOE Joint Genome Institute (JGI) 3300021826 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 2963052 2873 0 0 1 0 SRX3989454 Unrestricted 0.0 single_particle_sort 3300035890 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.K12 DOE Joint Genome Institute (JGI) 3300035890 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 1146959 1285 0 0 0 0 SRX8898055 Unrestricted 0.0 single_particle_sort 3300024886 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.05.I16 DOE Joint Genome Institute (JGI) 3300024886 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 414956 560 0 0 0 0 SRX4391049 Unrestricted 0.0 single_particle_sort 3300037988 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.I10 DOE Joint Genome Institute (JGI) 3300037988 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 616316 680 0 0 0 0 SRX9411028 Unrestricted 0.0 single_particle_sort 3300034549 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.I15 DOE Joint Genome Institute (JGI) 3300034549 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 493859 553 0 0 0 0 SRX8393330 Unrestricted 0.0 single_particle_sort 3300035795 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.K7 DOE Joint Genome Institute (JGI) 3300035795 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 536673 593 1 0 1 0 SRX8859685 Unrestricted 0.0 single_particle_sort 3300038096 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .J22 DOE Joint Genome Institute (JGI) 3300038096 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 326969 392 0 0 0 0 SRX9411569 Unrestricted 0.0 single_particle_sort 3300041095 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.I14 DOE Joint Genome Institute (JGI) 3300041095 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 262661 313 0 0 0 0 SRX9654512 Unrestricted 0.0 single_particle_sort 3300021831 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.D19 DOE Joint Genome Institute (JGI) 3300021831 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1710457 1886 0 0 0 0 SRX3989578 Unrestricted 0.0 single_particle_sort 3300024744 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-O16 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024744 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 146318 167 0 0 0 0 0.0 single_particle_sort 3300018404 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_K4 DOE Joint Genome Institute (JGI) 3300018404 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 4581069 4674 1 0 2 0 SRX4648719 Unrestricted 0.0 single_particle_sort 3300041195 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.I5 DOE Joint Genome Institute (JGI) 3300041195 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 4197678 4035 0 0 0 0 SRX9655000 Unrestricted 0.0 single_particle_sort 3300038196 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.L11 DOE Joint Genome Institute (JGI) 3300038196 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 173044 180 0 0 0 0 SRX9411812 Unrestricted 0.0 single_particle_sort 3300016285 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-F13 DOE Joint Genome Institute (JGI) 3300016285 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 621499 727 0 0 0 0 SRX3540065 Unrestricted 0.0 single_particle_sort 3300021631 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.G5 DOE Joint Genome Institute (JGI) 3300021631 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 43863 72 0 0 0 0 SRX3990634 Unrestricted 0.0 single_particle_sort 3300023160 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.L6 DOE Joint Genome Institute (JGI) 3300023160 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1866790 1997 1 0 1 0 SRX4509522 Unrestricted 0.0 single_particle_sort 3300021703 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.M22 DOE Joint Genome Institute (JGI) 3300021703 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 406927 450 0 0 0 0 SRX4009076 Unrestricted 0.0 single_particle_sort 3300023896 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.F18 DOE Joint Genome Institute (JGI) 3300023896 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 787722 908 0 0 0 0 SRX4525832 Unrestricted 0.0 single_particle_sort 3300019975 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-C13 DOE Joint Genome Institute (JGI) 3300019975 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 516060 553 0 0 1 0 SRX4653691 Unrestricted 0.0 single_particle_sort 3300038058 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.I6 DOE Joint Genome Institute (JGI) 3300038058 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 189816 289 0 0 0 0 SRX9411382 Unrestricted 0.0 single_particle_sort 3300071284 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_Wchmk_B09_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071284 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 952279 969 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300035929 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.H11 DOE Joint Genome Institute (JGI) 3300035929 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 177046 205 0 0 0 0 SRX8862478 Unrestricted 0.0 single_particle_sort 3300023791 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.D18 DOE Joint Genome Institute (JGI) 3300023791 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 360424 397 0 0 0 0 SRX4548277 Unrestricted 0.0 single_particle_sort 3300023948 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.F21 DOE Joint Genome Institute (JGI) 3300023948 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1140287 1293 1 0 1 0 SRX4519542 Unrestricted 0.0 single_particle_sort 3300023127 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.H12 DOE Joint Genome Institute (JGI) 3300023127 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 67563 102 1 0 1 0 SRX4508530 Unrestricted 0.0 single_particle_sort 3300010849 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_18_SCGC_AG-159-F05 DOE Joint Genome Institute (JGI) 3300010849 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 1409862 1444 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035277 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_G10 DOE Joint Genome Institute (JGI) 3300035277 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 50864 67 0 0 0 0 SRX9539373 Unrestricted 0.0 single_particle_sort 3300033592 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_G3 DOE Joint Genome Institute (JGI) 3300033592 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 25882 31 0 0 0 0 SRX7525357 Unrestricted 0.0 single_particle_sort 3300036021 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.C16 DOE Joint Genome Institute (JGI) 3300036021 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 390688 448 1 0 1 0 SRX8857983 Unrestricted 0.0 single_particle_sort 3300021736 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.J17 DOE Joint Genome Institute (JGI) 3300021736 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 592919 689 0 0 0 0 SRX4009707 Unrestricted 0.0 single_particle_sort 3300023351 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.J22 DOE Joint Genome Institute (JGI) 3300023351 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1556582 1429 0 0 1 0 SRX4519735 Unrestricted 0.0 single_particle_sort 3300023858 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.G11 DOE Joint Genome Institute (JGI) 3300023858 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 675188 718 1 0 1 0 SRX4519543 Unrestricted 0.0 single_particle_sort 3300022963 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.K15 DOE Joint Genome Institute (JGI) 3300022963 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 185570 243 0 0 0 0 SRX4418792 Unrestricted 0.0 single_particle_sort 3300048727 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 159_I4_SVS DOE Joint Genome Institute (JGI) 3300048727 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 62856 91 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300050790 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_G5_SVS DOE Joint Genome Institute (JGI) 3300050790 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 77032 105 0 0 0 0 Restricted 0.0 single_particle_sort 3300041325 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.M17 DOE Joint Genome Institute (JGI) 3300041325 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 593278 643 0 0 0 0 SRX9646877 Unrestricted 0.0 single_particle_sort 3300016441 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - PAUC34f_bacterium_SCGC_AG-636-D07 DOE Joint Genome Institute (JGI) 3300016441 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 1254358 1269 1 0 2 0 SRX3784663 Unrestricted 0.0 single_particle_sort 3300014985 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-2.J4 DOE Joint Genome Institute (JGI) 3300014985 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 107018 144 0 0 1 0 Restricted 0.0 single_particle_sort 3300050939 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-956-E02 DOE Joint Genome Institute (JGI) 3300050939 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1197303 -42.124435 661876 630 0 0 0 0 Restricted 0.0 single_particle_sort 3300019549 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-C13 DOE Joint Genome Institute (JGI) 3300019549 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 27546 40 0 0 0 0 SRX3561053 Unrestricted 0.0 single_particle_sort 3300023451 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.G21 DOE Joint Genome Institute (JGI) 3300023451 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 567902 558 0 0 0 0 SRX4548517 Unrestricted 0.0 single_particle_sort 3300023397 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.K10 DOE Joint Genome Institute (JGI) 3300023397 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 295287 289 0 0 0 0 SRX4548978 Unrestricted 0.0 single_particle_sort 3300022265 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Acetothermia_bacterium_SCGC_AH-151-P15 Bigelow Laboratory for Ocean Sciences 3300022265 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 449970 514 1 0 0 0 0.0 single_particle_sort 3300018173 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Lentisphaerae_bacterium_SCGC_AG-650-E18 DOE Joint Genome Institute (JGI) 3300018173 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1182768 976 1 0 0 0 SRX3976956 Unrestricted 0.0 single_particle_sort 3300036751 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.G20.redo DOE Joint Genome Institute (JGI) 3300036751 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 419826 528 0 0 0 0 SRX8910316 Unrestricted 0.0 single_particle_sort 3300019832 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-I22 DOE Joint Genome Institute (JGI) 3300019832 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 586976 624 0 0 0 0 SRX4663278 Unrestricted 0.0 single_particle_sort 3300015745 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-F15 DOE Joint Genome Institute (JGI) 3300015745 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 130052 155 0 0 0 0 SRX3551015 Unrestricted 0.0 single_particle_sort 3300036612 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.H10 DOE Joint Genome Institute (JGI) 3300036612 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 587809 768 1 0 0 0 SRX8902555 Unrestricted 0.0 single_particle_sort 3300038083 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .H5 DOE Joint Genome Institute (JGI) 3300038083 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 839343 1153 0 0 0 0 SRX9411535 Unrestricted 0.0 single_particle_sort 3300023883 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.M16 DOE Joint Genome Institute (JGI) 3300023883 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 734473 819 0 0 0 0 SRX4549586 Unrestricted 0.0 single_particle_sort 3300023757 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.05.D15 DOE Joint Genome Institute (JGI) 3300023757 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 154847 204 0 0 0 0 SRX4390997 Unrestricted 0.0 single_particle_sort 3300041649 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.C19 DOE Joint Genome Institute (JGI) 3300041649 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1222946 1240 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300038183 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.E4 DOE Joint Genome Institute (JGI) 3300038183 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 501310 653 0 0 0 0 SRX9411805 Unrestricted 0.0 single_particle_sort 3300018146 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-O05 DOE Joint Genome Institute (JGI) 3300018146 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 535529 531 0 0 0 0 SRX3974895 Unrestricted 0.0 single_particle_sort 3300019632 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-C14 DOE Joint Genome Institute (JGI) 3300019632 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 91023 109 0 0 0 0 SRX3959908 Unrestricted 0.0 single_particle_sort 3300041330 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.D20 DOE Joint Genome Institute (JGI) 3300041330 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2327617 2494 1 0 1 0 SRX9646389 Unrestricted 0.0 single_particle_sort 3300041393 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.C8 DOE Joint Genome Institute (JGI) 3300041393 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1662059 1798 0 0 0 0 SRX9646160 Unrestricted 0.0 single_particle_sort 3300018291 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_M15 DOE Joint Genome Institute (JGI) 3300018291 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1127645 1052 1 0 1 0 SRX4650346 Unrestricted 0.0 single_particle_sort 3300041110 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.E15 DOE Joint Genome Institute (JGI) 3300041110 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 765620 790 1 0 1 0 SRX9654420 Unrestricted 0.0 single_particle_sort 3300024767 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-E09 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024767 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 152846 195 0 0 0 0 0.0 single_particle_sort 3300026601 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-M06 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026601 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 113094 139 0 0 0 0 0.0 single_particle_sort 3300019904 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-N8 DOE Joint Genome Institute (JGI) 3300019904 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 305568 388 1 0 0 0 SRX4663568 Unrestricted 0.0 single_particle_sort 3300010788 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_13_SCGC_AG-138-G08 DOE Joint Genome Institute (JGI) 3300010788 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 316938 397 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300019587 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-H16 DOE Joint Genome Institute (JGI) 3300019587 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 43764 65 0 0 0 0 SRX3560703 Unrestricted 0.0 single_particle_sort 3300035710 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_L10 DOE Joint Genome Institute (JGI) 3300035710 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 60066 87 0 0 0 0 SRX10045480 Unrestricted 0.0 single_particle_sort 3300024735 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-O18 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024735 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 120471 159 0 0 0 0 0.0 single_particle_sort 3300033607 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_K11 DOE Joint Genome Institute (JGI) 3300033607 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 13572 21 0 0 0 0 SRX7525435 Unrestricted 0.0 single_particle_sort 3300019421 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16007 DOE Joint Genome Institute (JGI) 3300019421 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 2248729 2373 1 0 1 0 SRX3985612 Unrestricted 0.0 single_particle_sort 3300024382 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Pseudomonas bacterium JGI PFNR15_K20 DOE Joint Genome Institute (JGI) 3300024382 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 150338 192 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300024720 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-B16 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024720 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 99206 146 0 0 0 0 0.0 single_particle_sort 3300050801 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_K5_SVS DOE Joint Genome Institute (JGI) 3300050801 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 48401 84 0 0 0 0 Restricted 0.0 single_particle_sort 3300021780 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.K10 DOE Joint Genome Institute (JGI) 3300021780 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 1098849 1281 0 0 0 0 SRX4009947 Unrestricted 0.0 single_particle_sort 3300026574 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-L02 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026574 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 15022 19 0 0 0 0 0.0 single_particle_sort 3300016529 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Lentisphaerae_bacterium_SCGC_AG-650-D10 DOE Joint Genome Institute (JGI) 3300016529 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 633261 616 1 0 1 0 SRX3784751 Unrestricted 0.0 single_particle_sort 3300033315 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.L11 DOE Joint Genome Institute (JGI) 3300033315 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 316402 327 0 0 0 0 SRX7627672 Unrestricted 0.0 single_particle_sort 3300016226 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-C17 DOE Joint Genome Institute (JGI) 3300016226 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 388518 445 0 0 0 0 SRX3562817 Unrestricted 0.0 single_particle_sort 3300044083 *Microbiome Permanent Draft High-throughput characterization of viral-host interactions Sorted cell/s from lab media in Berkeley, California, United States - SPS_viraltag_JGI_H497-N17 DOE Joint Genome Institute (JGI) 3300044083 Metagenome - Single Particle Sort spades v. 3.15.0 released based on JGI ITS No Yes sroux@lbl.gov Simon Roux No Engineered Lab enrichment Unclassified Defined media Unclassified Defined media 37.8777 -122.251 124569 132 3 0 4 0 Unrestricted 0.0 single_particle_sort 3300023800 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.G11 DOE Joint Genome Institute (JGI) 3300023800 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 355191 425 1 0 1 0 SRX4547509 Unrestricted 0.0 single_particle_sort 3300035723 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_D16 DOE Joint Genome Institute (JGI) 3300035723 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 35605 48 0 0 0 0 SRX10045723 Unrestricted 0.0 single_particle_sort 3300037966 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.I4 DOE Joint Genome Institute (JGI) 3300037966 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 93969 102 0 0 0 0 SRX9411494 Unrestricted 0.0 single_particle_sort 3300010753 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.04.N15 DOE Joint Genome Institute (JGI) 3300010753 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 154571 202 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300024361 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.G15 DOE Joint Genome Institute (JGI) 3300024361 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 21488 29 0 0 0 0 SRX4547879 Unrestricted 0.0 single_particle_sort 3300015573 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown bacterium SCGC_AG-122-D14 DOE Joint Genome Institute (JGI) 3300015573 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 685365 783 0 0 0 0 SRX3571929 Unrestricted 0.0 single_particle_sort 3300038100 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .N14 DOE Joint Genome Institute (JGI) 3300038100 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 244682 295 0 0 0 0 SRX9411594 Unrestricted 0.0 single_particle_sort 3300024868 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.05.J21 DOE Joint Genome Institute (JGI) 3300024868 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 23598 32 0 0 0 0 SRX4391166 Unrestricted 0.0 single_particle_sort 3300033708 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_A17 DOE Joint Genome Institute (JGI) 3300033708 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 5494 6 0 0 0 0 SRX7525385 Unrestricted 0.0 single_particle_sort 3300032564 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.I20 DOE Joint Genome Institute (JGI) 3300032564 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 309220 338 1 0 1 0 SRX6452386 Unrestricted 0.0 single_particle_sort 3300041123 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.N15 DOE Joint Genome Institute (JGI) 3300041123 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 3069305 3326 0 0 1 0 SRX9668639 Unrestricted 0.0 single_particle_sort 3300023600 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.F16 DOE Joint Genome Institute (JGI) 3300023600 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 531527 649 1 0 0 0 SRX4415567 Unrestricted 0.0 single_particle_sort 3300019628 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-H15 DOE Joint Genome Institute (JGI) 3300019628 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 88840 104 0 0 0 0 SRX3560977 Unrestricted 0.0 single_particle_sort 3300018257 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - uncultured microorganism JGI MDM2 ZSSED05-1-M14 DOE Joint Genome Institute (JGI) 3300018257 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 817340 888 1 0 0 0 SRX3917495 Unrestricted 0.0 single_particle_sort 3300015546 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown bacterium SCGC_AG-122-E16 DOE Joint Genome Institute (JGI) 3300015546 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 500058 600 0 0 1 0 SRX3573057 Unrestricted 0.0 single_particle_sort 3300033333 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.G5 DOE Joint Genome Institute (JGI) 3300033333 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 304961 347 1 0 0 0 SRX7627186 Unrestricted 0.0 single_particle_sort 3300038000 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .I15 DOE Joint Genome Institute (JGI) 3300038000 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 82134 114 0 0 0 0 SRX9411526 Unrestricted 0.0 single_particle_sort 3300024668 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-F03 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024668 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 67716 95 0 0 0 0 0.0 single_particle_sort 3300037372 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.L13.redo DOE Joint Genome Institute (JGI) 3300037372 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 946957 987 2 0 1 0 SRX9402801 Unrestricted 0.0 single_particle_sort 3300051119 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_M6_SVS DOE Joint Genome Institute (JGI) 3300051119 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 44239 75 0 0 0 0 Restricted 0.0 single_particle_sort 3300041386 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.M18 DOE Joint Genome Institute (JGI) 3300041386 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 546052 509 0 0 0 0 SRX9645417 Unrestricted 0.0 single_particle_sort 3300034727 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P8_L2 DOE Joint Genome Institute (JGI) 3300034727 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 6910 10 0 0 0 0 SRX8136693 Unrestricted 0.0 single_particle_sort 3300023379 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.I15 DOE Joint Genome Institute (JGI) 3300023379 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 608656 700 1 0 1 0 SRX4338068 Unrestricted 0.0 single_particle_sort 3300038241 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.L18 DOE Joint Genome Institute (JGI) 3300038241 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 208735 363 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015734 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-E13 DOE Joint Genome Institute (JGI) 3300015734 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 165636 188 0 0 0 0 SRX3560678 Unrestricted 0.0 single_particle_sort 3300018375 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_J21 DOE Joint Genome Institute (JGI) 3300018375 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 1928134 1913 0 0 0 0 SRX4646607 Unrestricted 0.0 single_particle_sort 3300033306 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.J11 DOE Joint Genome Institute (JGI) 3300033306 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 574801 562 0 0 0 0 SRX7630594 Unrestricted 0.0 single_particle_sort 3300024713 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-M16 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024713 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 124587 135 0 0 0 0 0.0 single_particle_sort 3300033435 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.H11 DOE Joint Genome Institute (JGI) 3300033435 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 263823 316 1 0 1 0 SRX7630352 Unrestricted 0.0 single_particle_sort 3300024801 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-B17 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024801 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 207869 246 0 0 0 0 0.0 single_particle_sort 3300033761 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P2_A8 DOE Joint Genome Institute (JGI) 3300033761 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 6879 11 0 0 0 0 SRX7525347 Unrestricted 0.0 single_particle_sort 3300016141 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-H19 DOE Joint Genome Institute (JGI) 3300016141 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 569156 646 0 0 0 0 SRX3560699 Unrestricted 0.0 single_particle_sort 3300041395 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.L7 DOE Joint Genome Institute (JGI) 3300041395 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2207705 2046 0 0 0 0 SRX9645685 Unrestricted 0.0 single_particle_sort 3300015659 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - DC4.4.2015 0309 DC4 P4 16S.M21.double-peak DOE Joint Genome Institute (JGI) 3300015659 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 761819 998 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300022042 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - TA06 bacterium JGI MDM2 NGM80-1-H19 DOE Joint Genome Institute (JGI) 3300022042 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 801905 950 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300051139 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_A3_SVS DOE Joint Genome Institute (JGI) 3300051139 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 34112 44 0 0 0 0 Restricted 0.0 single_particle_sort 3300015949 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-J04 DOE Joint Genome Institute (JGI) 3300015949 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 328930 414 0 0 1 0 SRX3562953 Unrestricted 0.0 single_particle_sort 3300023360 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.C20 DOE Joint Genome Institute (JGI) 3300023360 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1498584 1609 1 0 1 0 SRX4520587 Unrestricted 0.0 single_particle_sort 3300033467 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.D13 DOE Joint Genome Institute (JGI) 3300033467 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 895669 943 0 0 0 0 SRX7638137 Unrestricted 0.0 single_particle_sort 3300024733 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-M08 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024733 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 119958 157 0 0 0 0 0.0 single_particle_sort 3300016041 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-582-A19 DOE Joint Genome Institute (JGI) 3300016041 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 457716 523 1 0 1 0 SRX3580154 Unrestricted 0.0 single_particle_sort 3300015859 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-K11 DOE Joint Genome Institute (JGI) 3300015859 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 177260 207 0 0 0 0 SRX3580241 Unrestricted 0.0 single_particle_sort 3300015714 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-E10 DOE Joint Genome Institute (JGI) 3300015714 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 120866 167 0 0 0 0 SRX3560803 Unrestricted 0.0 single_particle_sort 3300022142 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.G10 DOE Joint Genome Institute (JGI) 3300022142 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 3739073 3460 1 0 1 0 SRX3997824 Unrestricted 0.0 single_particle_sort 3300033666 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P2_P10 DOE Joint Genome Institute (JGI) 3300033666 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 13471 15 0 0 0 0 SRX7530067 Unrestricted 0.0 single_particle_sort 3300032678 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.N16 DOE Joint Genome Institute (JGI) 3300032678 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 2209341 1888 0 0 1 0 SRX6451718 Unrestricted 0.0 single_particle_sort 3300016200 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Saccharibacteria bacterium SCGC_AG-574-K06 DOE Joint Genome Institute (JGI) 3300016200 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 212276 246 1 0 1 0 SRX3578854 Unrestricted 0.0 single_particle_sort 3300023327 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.D17 DOE Joint Genome Institute (JGI) 3300023327 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 538187 615 1 0 1 0 SRX4520374 Unrestricted 0.0 single_particle_sort 3300036057 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_B5 DOE Joint Genome Institute (JGI) 3300036057 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 151290 191 0 0 0 0 SRX10045893 Unrestricted 0.0 single_particle_sort 3300026580 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-M19 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026580 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 45665 75 0 0 0 0 0.0 single_particle_sort 3300050767 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_N20_SVS DOE Joint Genome Institute (JGI) 3300050767 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 40130 50 0 0 0 0 Restricted 0.0 single_particle_sort 3300036628 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.C17 DOE Joint Genome Institute (JGI) 3300036628 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 1148890 1277 1 0 0 0 SRX8902907 Unrestricted 0.0 single_particle_sort 3300023151 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.N20 DOE Joint Genome Institute (JGI) 3300023151 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 1251817 1444 0 0 0 0 SRX4509063 Unrestricted 0.0 single_particle_sort 3300018446 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_M20 DOE Joint Genome Institute (JGI) 3300018446 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 292903 313 0 0 0 0 SRX4652218 Unrestricted 0.0 single_particle_sort 3300033190 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.F14 DOE Joint Genome Institute (JGI) 3300033190 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 460063 539 0 0 0 0 SRX7629013 Unrestricted 0.0 single_particle_sort 3300032371 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.K8 DOE Joint Genome Institute (JGI) 3300032371 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 237086 270 0 0 0 0 SRX6433403 Unrestricted 0.0 single_particle_sort 3300033866 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.J8 DOE Joint Genome Institute (JGI) 3300033866 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 400464 485 0 0 1 0 SRX7626223 Unrestricted 0.0 single_particle_sort 3300024706 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-C13 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024706 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 87387 134 0 0 0 0 0.0 single_particle_sort 3300033313 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.D10 DOE Joint Genome Institute (JGI) 3300033313 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 743153 856 0 0 0 0 SRX7627674 Unrestricted 0.0 single_particle_sort 3300021774 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.H11 DOE Joint Genome Institute (JGI) 3300021774 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 817745 945 1 0 1 0 SRX3990756 Unrestricted 0.0 single_particle_sort 3300010755 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.L10 DOE Joint Genome Institute (JGI) 3300010755 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 160334 209 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300018104 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_F11 DOE Joint Genome Institute (JGI) 3300018104 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 173514 205 0 0 0 0 SRX4647822 Unrestricted 0.0 single_particle_sort 3300019779 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-D12 DOE Joint Genome Institute (JGI) 3300019779 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 74176 105 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300038026 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.G21 DOE Joint Genome Institute (JGI) 3300038026 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 512095 633 0 0 0 0 SRX9411128 Unrestricted 0.0 single_particle_sort 3300023626 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.K6 DOE Joint Genome Institute (JGI) 3300023626 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 1350858 1568 0 0 1 0 SRX4548026 Unrestricted 0.0 single_particle_sort 3300015575 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - Omnitrophica bacterium SCGC_AG-122-K14 DOE Joint Genome Institute (JGI) 3300015575 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 718616 799 0 0 0 0 SRX3573093 Unrestricted 0.0 single_particle_sort 3300013040 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - DC4.5.2015 0309 DC4 p5 16S.J20.double-seq DOE Joint Genome Institute (JGI) 3300013040 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1289198 1552 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033367 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.F4 DOE Joint Genome Institute (JGI) 3300033367 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 268129 301 0 0 0 0 SRX7626916 Unrestricted 0.0 single_particle_sort 3300038126 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.M21 DOE Joint Genome Institute (JGI) 3300038126 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 1387830 1822 0 0 0 0 SRX9411743 Unrestricted 0.0 single_particle_sort 3300041125 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.G14 DOE Joint Genome Institute (JGI) 3300041125 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2320690 1916 1 0 1 0 SRX9668759 Unrestricted 0.0 single_particle_sort 3300023460 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.L18 DOE Joint Genome Institute (JGI) 3300023460 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 744395 795 1 0 1 0 SRX4548454 Unrestricted 0.0 single_particle_sort 3300071311 *Microbiome Permanent Draft Comparing whole genome amplification chemistries for bacterial single cell genomics Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - scBac_Watchmaker_EnviBac_sc_well5A_S83 Stanford University 3300071311 Metagenome - Single Particle Sort Spades v. 3.15.3 released per request -- IMGSUPP-4358 No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 1102769 1161 0 0 0 0 0.0 single_particle_sort 3300024408 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Bacillales bacterium JGI PFNR15_D18 DOE Joint Genome Institute (JGI) 3300024408 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 2462869 2830 2 0 2 0 Unrestricted 0.0 single_particle_sort 3300023826 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.E4 DOE Joint Genome Institute (JGI) 3300023826 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 533515 573 1 0 1 0 SRX4523918 Unrestricted 0.0 single_particle_sort 3300048751 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_B15_SVS DOE Joint Genome Institute (JGI) 3300048751 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 62738 72 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033335 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.F4 DOE Joint Genome Institute (JGI) 3300033335 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 823267 836 0 0 0 0 SRX7630473 Unrestricted 0.0 single_particle_sort 3300050868 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_B20_SVS DOE Joint Genome Institute (JGI) 3300050868 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 60117 86 0 0 0 0 Restricted 0.0 single_particle_sort 3300035999 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.D6 DOE Joint Genome Institute (JGI) 3300035999 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 391761 430 0 0 0 0 SRX8856748 Unrestricted 0.0 single_particle_sort 3300033320 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.E4 DOE Joint Genome Institute (JGI) 3300033320 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 223202 258 1 0 1 0 SRX7630476 Unrestricted 0.0 single_particle_sort 3300041130 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.K14 DOE Joint Genome Institute (JGI) 3300041130 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1263196 1302 1 0 1 0 SRX9668831 Unrestricted 0.0 single_particle_sort 3300032471 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.N10 DOE Joint Genome Institute (JGI) 3300032471 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 963421 1407 0 0 0 0 SRX6433583 Unrestricted 0.0 single_particle_sort 3300018346 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_G16 DOE Joint Genome Institute (JGI) 3300018346 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1552998 1496 1 0 1 0 SRX4649714 Unrestricted 0.0 single_particle_sort 3300037907 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.F21 DOE Joint Genome Institute (JGI) 3300037907 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 475646 597 0 0 0 0 SRX9410338 Unrestricted 0.0 single_particle_sort 3300023581 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.G9 DOE Joint Genome Institute (JGI) 3300023581 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 150867 159 0 0 0 0 SRX4547986 Unrestricted 0.0 single_particle_sort 3300036727 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.I7.redo DOE Joint Genome Institute (JGI) 3300036727 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 985708 1078 0 0 0 0 SRX8905270 Unrestricted 0.0 single_particle_sort 3300035730 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_C9 DOE Joint Genome Institute (JGI) 3300035730 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 213710 295 0 0 0 0 SRX10045277 Unrestricted 0.0 single_particle_sort 3300024715 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-D07 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024715 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 131076 141 0 0 0 0 0.0 single_particle_sort 3300041271 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.D18 DOE Joint Genome Institute (JGI) 3300041271 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1597179 1522 1 0 1 0 SRX9668531 Unrestricted 0.0 single_particle_sort 3300036091 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_B18 DOE Joint Genome Institute (JGI) 3300036091 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 49452 63 0 0 0 0 SRX10046438 Unrestricted 0.0 single_particle_sort 3300023427 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.E13 DOE Joint Genome Institute (JGI) 3300023427 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 2629223 2881 1 0 1 0 SRX4548970 Unrestricted 0.0 single_particle_sort 3300016577 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - Chloroflexi_bacterium_SCGC_AG-640-K21 DOE Joint Genome Institute (JGI) 3300016577 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 1676036 1769 1 0 1 0 SRX3784358 Unrestricted 0.0 single_particle_sort 3300018373 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_C10 DOE Joint Genome Institute (JGI) 3300018373 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1786729 1749 0 0 0 0 SRX4649172 Unrestricted 0.0 single_particle_sort 3300036632 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.C19 DOE Joint Genome Institute (JGI) 3300036632 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 1277746 1456 0 0 1 0 SRX8903141 Unrestricted 0.0 single_particle_sort 3300041093 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.N15 DOE Joint Genome Institute (JGI) 3300041093 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 183031 218 0 0 0 0 SRX9654791 Unrestricted 0.0 single_particle_sort 3300019457 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent microbial mat, Guaymas Basin, Mexico - 6X_4868_18_01 DOE Joint Genome Institute (JGI) 3300019457 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.001 -110.5999 27903648 30239 5 0 10 0 SRX3974300 Unrestricted 0.0 single_particle_sort 3300041598 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.J6 DOE Joint Genome Institute (JGI) 3300041598 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 615239 629 1 0 1 0 SRX14829607 Unrestricted 0.0 single_particle_sort 3300019391 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16018 DOE Joint Genome Institute (JGI) 3300019391 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 1269923 1470 1 0 1 0 SRX3985672 Unrestricted 0.0 single_particle_sort 3300019898 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-L8 DOE Joint Genome Institute (JGI) 3300019898 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 83771 116 0 0 0 0 SRX4663359 Unrestricted 0.0 single_particle_sort 3300035793 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.J9 DOE Joint Genome Institute (JGI) 3300035793 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 550044 613 0 0 0 0 SRX8859676 Unrestricted 0.0 single_particle_sort 3300019812 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-J10 DOE Joint Genome Institute (JGI) 3300019812 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 444912 516 0 0 0 0 SRX4663325 Unrestricted 0.0 single_particle_sort 3300014341 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.F18 DOE Joint Genome Institute (JGI) 3300014341 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1298458 1582 1 0 1 0 SRX3298948 Unrestricted 0.0 single_particle_sort 3300016283 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-J16 DOE Joint Genome Institute (JGI) 3300016283 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 633081 726 0 0 1 0 SRX3562954 Unrestricted 0.0 single_particle_sort 3300041310 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.K11 DOE Joint Genome Institute (JGI) 3300041310 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 154136 158 0 0 0 0 SRX9646400 Unrestricted 0.0 single_particle_sort 3300015478 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-K07 DOE Joint Genome Institute (JGI) 3300015478 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 199251 242 0 0 0 0 SRX3549989 Unrestricted 0.0 single_particle_sort 3300041193 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.E13 DOE Joint Genome Institute (JGI) 3300041193 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1846594 1832 1 0 1 0 SRX9654940 Unrestricted 0.0 single_particle_sort 3300019612 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-F19 DOE Joint Genome Institute (JGI) 3300019612 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 80356 86 0 0 0 0 SRX3561056 Unrestricted 0.0 single_particle_sort 3300021705 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.J18 DOE Joint Genome Institute (JGI) 3300021705 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 328834 415 0 0 0 0 SRX4007660 Unrestricted 0.0 single_particle_sort 3300024082 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.K13 DOE Joint Genome Institute (JGI) 3300024082 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 702743 815 0 0 0 0 SRX4522014 Unrestricted 0.0 single_particle_sort 3300019973 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-F4 DOE Joint Genome Institute (JGI) 3300019973 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 464955 520 0 0 0 0 SRX4654463 Unrestricted 0.0 single_particle_sort 3300041259 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.E7 DOE Joint Genome Institute (JGI) 3300041259 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 787942 851 1 0 1 0 SRX9657284 Unrestricted 0.0 single_particle_sort 3300050919 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-G13 DOE Joint Genome Institute (JGI) 3300050919 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 2415543 2232 1 0 1 0 Restricted 0.0 single_particle_sort 3300019656 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - archaeum_unknown_SCGC_AG-650-D22 DOE Joint Genome Institute (JGI) 3300019656 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 164222 184 0 0 0 0 SRX3959913 Unrestricted 0.0 single_particle_sort 3300035862 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0815.Sybr.04.L21 DOE Joint Genome Institute (JGI) 3300035862 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 1130774 1056 1 0 1 0 SRX8894840 Unrestricted 0.0 single_particle_sort 3300019946 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-F22 DOE Joint Genome Institute (JGI) 3300019946 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 63232 86 0 0 0 0 SRX4654465 Unrestricted 0.0 single_particle_sort 3300022965 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - GAL15 bacterium JGI MDM2 DC4-2-N8 DOE Joint Genome Institute (JGI) 3300022965 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 200878 240 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300014996 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.E6 DOE Joint Genome Institute (JGI) 3300014996 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 200664 265 0 0 0 0 Restricted 0.0 single_particle_sort 3300041323 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.F11 DOE Joint Genome Institute (JGI) 3300041323 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 188397 189 0 0 0 0 SRX9646852 Unrestricted 0.0 single_particle_sort 3300033344 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.E11 DOE Joint Genome Institute (JGI) 3300033344 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 191152 198 0 0 0 0 SRX7627682 Unrestricted 0.0 single_particle_sort 3300018221 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_H6 DOE Joint Genome Institute (JGI) 3300018221 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 569325 607 1 0 1 0 SRX4652739 Unrestricted 0.0 single_particle_sort 3300015378 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - unknown bacterium SCGC_AG-128-M03 DOE Joint Genome Institute (JGI) 3300015378 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 315799 392 1 0 0 0 SRX3577032 Unrestricted 0.0 single_particle_sort 3300049957 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_J21_SVS DOE Joint Genome Institute (JGI) 3300049957 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 33219 52 0 0 0 0 Restricted 0.0 single_particle_sort 3300019797 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-L11 DOE Joint Genome Institute (JGI) 3300019797 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 256402 299 0 0 0 0 SRX4663346 Unrestricted 0.0 single_particle_sort 3300015871 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-578-P02 DOE Joint Genome Institute (JGI) 3300015871 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 213635 241 0 0 0 0 SRX3579698 Unrestricted 0.0 single_particle_sort 3300021716 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.G18 DOE Joint Genome Institute (JGI) 3300021716 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 468476 530 0 0 0 0 SRX3991259 Unrestricted 0.0 single_particle_sort 3300014441 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.F09 DOE Joint Genome Institute (JGI) 3300014441 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 986368 1156 1 0 1 0 SRX3366865 Unrestricted 0.0 single_particle_sort 3300019491 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from Cistern Spring water, Yellowstone National Park, Wyoming, United States - Nanoarchaeum sp. JGI 000158CP-J13 DOE Joint Genome Institute (JGI) 3300019491 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hypoxic/sulfidic water 44.723 -110.7041 220275 293 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300016258 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Parcubacteria bacterium SCGC_AG-278-G19 DOE Joint Genome Institute (JGI) 3300016258 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 560171 632 1 0 0 0 SRX3578377 Unrestricted 0.0 single_particle_sort 3300035881 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.K20 DOE Joint Genome Institute (JGI) 3300035881 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 2057430 2129 1 0 1 0 SRX8857309 Unrestricted 0.0 single_particle_sort 3300015671 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Gongxiaoshe hot spring sediment, Tengchong, China - GXS.2.2014 1201 MDM2 GXS p2 16S.B13.double-seq DOE Joint Genome Institute (JGI) 3300015671 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 25.4401 98.4408 1301857 1259 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300034457 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.G19 DOE Joint Genome Institute (JGI) 3300034457 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 1286400 1358 0 0 0 0 SRX8389546 Unrestricted 0.0 single_particle_sort 3300022263 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - unknown_bacterium_SCGC_AH-147-J05 Bigelow Laboratory for Ocean Sciences 3300022263 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 381927 441 0 0 1 0 0.0 single_particle_sort 3300032359 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.K13 DOE Joint Genome Institute (JGI) 3300032359 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 381714 362 1 0 0 0 SRX6433530 Unrestricted 0.0 single_particle_sort 3300021811 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.J17 DOE Joint Genome Institute (JGI) 3300021811 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 709638 813 0 0 0 0 SRX3989952 Unrestricted 0.0 single_particle_sort 3300015504 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-G11 DOE Joint Genome Institute (JGI) 3300015504 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 293148 341 0 0 0 0 SRX3560310 Unrestricted 0.0 single_particle_sort 3300038085 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .K17 DOE Joint Genome Institute (JGI) 3300038085 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 1121750 1313 1 0 1 0 SRX9411542 Unrestricted 0.0 single_particle_sort 3300018175 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_C14 DOE Joint Genome Institute (JGI) 3300018175 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 102842 111 0 0 0 0 SRX4652742 Unrestricted 0.0 single_particle_sort 3300035786 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.I10 DOE Joint Genome Institute (JGI) 3300035786 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 336091 382 0 0 0 0 SRX8859314 Unrestricted 0.0 single_particle_sort 3300024790 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-C03 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024790 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 191594 237 0 0 0 0 0.0 single_particle_sort 3300035977 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.J15 DOE Joint Genome Institute (JGI) 3300035977 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 1371966 1457 0 0 1 0 SRX8854173 Unrestricted 0.0 single_particle_sort 3300015743 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-I13 DOE Joint Genome Institute (JGI) 3300015743 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 115926 150 1 0 0 0 SRX3551337 Unrestricted 0.0 single_particle_sort 3300016599 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Sorted cell/s from deep shales in West Virginia, USA - MahaSR_06_K3 DOE Joint Genome Institute (JGI) 3300016599 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back deep subsurface 39.6017 -79.9761 2027178 2138 0 0 1 0 SRX3577098 Unrestricted 0.0 single_particle_sort 3300021752 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.K6 DOE Joint Genome Institute (JGI) 3300021752 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 806082 880 0 0 0 0 SRX4004887 Unrestricted 0.0 single_particle_sort 3300034751 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.1.D12 DOE Joint Genome Institute (JGI) 3300034751 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 2445234 2539 1 0 1 0 SRX8390297 Unrestricted 0.0 single_particle_sort 3300021611 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.M7 DOE Joint Genome Institute (JGI) 3300021611 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 24749 26 0 0 0 0 SRX4009937 Unrestricted 0.0 single_particle_sort 3300023885 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.F6 DOE Joint Genome Institute (JGI) 3300023885 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 721509 824 1 0 1 0 SRX4524188 Unrestricted 0.0 single_particle_sort 3300034698 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.3.H17 DOE Joint Genome Institute (JGI) 3300034698 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 802210 892 1 0 1 0 SRX8390388 Unrestricted 0.0 single_particle_sort 3300016296 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-B11 DOE Joint Genome Institute (JGI) 3300016296 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 626502 751 0 0 0 0 SRX3563036 Unrestricted 0.0 single_particle_sort 3300038185 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.E7 DOE Joint Genome Institute (JGI) 3300038185 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 429877 558 0 0 0 0 SRX9411808 Unrestricted 0.0 single_particle_sort 3300041186 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.E12 DOE Joint Genome Institute (JGI) 3300041186 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 282853 265 0 0 0 0 SRX9523945 Unrestricted 0.0 single_particle_sort 3300015776 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-D19 DOE Joint Genome Institute (JGI) 3300015776 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 177262 231 0 0 0 0 SRX3560818 Unrestricted 0.0 single_particle_sort 3300015987 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-E17 DOE Joint Genome Institute (JGI) 3300015987 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 405431 457 1 0 1 0 SRX3577180 Unrestricted 0.0 single_particle_sort 3300023780 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.C12 DOE Joint Genome Institute (JGI) 3300023780 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 231479 295 0 0 0 0 SRX4548270 Unrestricted 0.0 single_particle_sort 3300050762 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_M17_SVS DOE Joint Genome Institute (JGI) 3300050762 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 18532 21 0 0 0 0 Restricted 0.0 single_particle_sort 3300035954 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.G13 DOE Joint Genome Institute (JGI) 3300035954 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1811544 1931 0 0 0 0 SRX8862679 Unrestricted 0.0 single_particle_sort 3300024695 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-A18 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024695 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 102516 120 0 0 0 0 0.0 single_particle_sort 3300033245 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.L4 DOE Joint Genome Institute (JGI) 3300033245 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 222152 268 0 0 0 0 SRX7630666 Unrestricted 0.0 single_particle_sort 3300041608 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.2.M4 DOE Joint Genome Institute (JGI) 3300041608 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 3794077 3668 0 0 1 0 SRX14832022 Unrestricted 0.0 single_particle_sort 3300033381 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.L4 DOE Joint Genome Institute (JGI) 3300033381 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 623185 612 0 0 0 0 SRX7627173 Unrestricted 0.0 single_particle_sort 3300023322 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.F18 DOE Joint Genome Institute (JGI) 3300023322 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 316093 332 0 0 0 0 SRX4548989 Unrestricted 0.0 single_particle_sort 3300036052 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_I21 DOE Joint Genome Institute (JGI) 3300036052 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 112766 161 1 0 0 0 SRX10045869 Unrestricted 0.0 single_particle_sort 3300034474 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.N19 DOE Joint Genome Institute (JGI) 3300034474 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 407246 451 1 0 0 0 SRX8390193 Unrestricted 0.0 single_particle_sort 3300050978 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_N7_SVS DOE Joint Genome Institute (JGI) 3300050978 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 43719 68 0 0 0 0 Restricted 0.0 single_particle_sort 3300035844 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0815.Sybr.04.C15 DOE Joint Genome Institute (JGI) 3300035844 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 1098298 958 1 0 0 0 SRX8894839 Unrestricted 0.0 single_particle_sort 3300018203 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_C18 DOE Joint Genome Institute (JGI) 3300018203 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 480648 504 0 0 0 0 SRX4652764 Unrestricted 0.0 single_particle_sort 3300019508 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Roseibacterium sp. HL7711_P4H5 JGI 000147CP-I17 DOE Joint Genome Institute (JGI) 3300019508 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 630938 678 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300041301 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.E16 DOE Joint Genome Institute (JGI) 3300041301 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1472619 1446 0 0 0 0 SRX9657721 Unrestricted 0.0 single_particle_sort 3300023520 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.G18 DOE Joint Genome Institute (JGI) 3300023520 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 285012 349 1 0 0 0 SRX4548436 Unrestricted 0.0 single_particle_sort 3300016470 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Aminicenantes_bacterium_SCGC_AG-636-K09 DOE Joint Genome Institute (JGI) 3300016470 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 1607179 1497 1 0 1 0 SRX3784463 Unrestricted 0.0 single_particle_sort 3300014484 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.F22 DOE Joint Genome Institute (JGI) 3300014484 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 2566563 2324 1 0 1 0 SRX3366902 Unrestricted 0.0 single_particle_sort 3300022047 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Atribacteria bacterium JGI MDM2 LBsed72-1-H14 DOE Joint Genome Institute (JGI) 3300022047 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment freshwater sediment 53.7598 107.9791 1104449 1213 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300049974 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_O16_SVS DOE Joint Genome Institute (JGI) 3300049974 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 35985 62 0 0 0 0 Restricted 0.0 single_particle_sort 3300048718 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_H22_SVS DOE Joint Genome Institute (JGI) 3300048718 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 23733 32 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300036016 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.I15 DOE Joint Genome Institute (JGI) 3300036016 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1460109 1493 0 0 1 0 SRX8857820 Unrestricted 0.0 single_particle_sort 3300050893 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_H4_SVS DOE Joint Genome Institute (JGI) 3300050893 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 24858 51 0 0 0 0 Restricted 0.0 single_particle_sort 3300037955 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.J17 DOE Joint Genome Institute (JGI) 3300037955 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 1039563 1010 1 0 1 0 SRX9410997 Unrestricted 0.0 single_particle_sort 3300015419 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Omnitrophica bacterium SCGC_AG-128-J21 DOE Joint Genome Institute (JGI) 3300015419 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 1226366 1248 0 0 0 0 SRX3577025 Unrestricted 0.0 single_particle_sort 3300033462 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.L5 DOE Joint Genome Institute (JGI) 3300033462 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 441659 512 1 0 1 0 SRX7630281 Unrestricted 0.0 single_particle_sort 3300018236 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_H4 DOE Joint Genome Institute (JGI) 3300018236 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 633827 682 0 0 0 0 SRX4652224 Unrestricted 0.0 single_particle_sort 3300016370 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Omnitrophica bacterium SCGC_AG-278-G04 DOE Joint Genome Institute (JGI) 3300016370 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 895405 872 0 0 1 0 SRX3578376 Unrestricted 0.0 single_particle_sort 3300014384 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.J07 DOE Joint Genome Institute (JGI) 3300014384 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 186567 234 1 0 1 0 SRX3368445 Unrestricted 0.0 single_particle_sort 3300033976 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.C18 DOE Joint Genome Institute (JGI) 3300033976 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 437900 504 0 0 1 0 SRX7630393 Unrestricted 0.0 single_particle_sort 3300033787 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P3_K22 DOE Joint Genome Institute (JGI) 3300033787 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 36333 75 0 0 0 0 SRX7531075 Unrestricted 0.0 single_particle_sort 3300033853 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.E6 DOE Joint Genome Institute (JGI) 3300033853 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 353854 445 0 0 0 0 SRX7626162 Unrestricted 0.0 single_particle_sort 3300023513 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.F21 DOE Joint Genome Institute (JGI) 3300023513 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 663713 755 0 0 0 0 SRX4499809 Unrestricted 0.0 single_particle_sort 3300010808 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_10_SCGC_AG-159-D09 DOE Joint Genome Institute (JGI) 3300010808 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 352937 505 0 0 2 0 Unrestricted 0.0 single_particle_sort 3300016572 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, USA - Caldithrix_bacterium_SCGC_AG-640-B15 DOE Joint Genome Institute (JGI) 3300016572 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas Yes 30902854.0 Environmental Aquatic Acidic Artesian spring Sediment Hot spring sediment 34.9956 -98.6889 7.5 1789231 1692 0 0 0 0 SRX3784219 Unrestricted 0.0 single_particle_sort 3300033943 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.M12 DOE Joint Genome Institute (JGI) 3300033943 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 277401 317 0 0 0 0 SRX7626285 Unrestricted 0.0 single_particle_sort 3300023422 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.N11 DOE Joint Genome Institute (JGI) 3300023422 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1235099 1356 1 0 1 0 SRX4520366 Unrestricted 0.0 single_particle_sort 3300023909 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.M12 DOE Joint Genome Institute (JGI) 3300023909 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 886944 989 1 0 1 0 SRX4501571 Unrestricted 0.0 single_particle_sort 3300033653 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_M17 DOE Joint Genome Institute (JGI) 3300033653 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 26060 15 0 0 0 0 SRX7529886 Unrestricted 0.0 single_particle_sort 3300050886 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_F13_SVS DOE Joint Genome Institute (JGI) 3300050886 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 36286 42 0 0 0 0 Restricted 0.0 single_particle_sort 3300037902 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.D11 DOE Joint Genome Institute (JGI) 3300037902 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 1050884 1261 0 0 0 0 SRX9409804 Unrestricted 0.0 single_particle_sort 3300036722 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.C4.redo DOE Joint Genome Institute (JGI) 3300036722 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 729847 786 0 0 0 0 SRX8905107 Unrestricted 0.0 single_particle_sort 3300036005 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.N18 DOE Joint Genome Institute (JGI) 3300036005 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 908681 962 0 0 0 0 SRX8857658 Unrestricted 0.0 single_particle_sort 3300014469 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.E20 DOE Joint Genome Institute (JGI) 3300014469 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1352592 1595 1 0 1 0 SRX3366859 Unrestricted 0.0 single_particle_sort 3300033362 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.N10 DOE Joint Genome Institute (JGI) 3300033362 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 157342 193 0 0 0 0 SRX7630586 Unrestricted 0.0 single_particle_sort 3300050781 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_C19_SVS DOE Joint Genome Institute (JGI) 3300050781 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 97914 148 0 0 0 0 Restricted 0.0 single_particle_sort 3300021800 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.J15 DOE Joint Genome Institute (JGI) 3300021800 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 617172 653 0 0 0 0 SRX3989564 Unrestricted 0.0 single_particle_sort 3300015694 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-F10 DOE Joint Genome Institute (JGI) 3300015694 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 71157 94 0 0 0 0 SRX3560811 Unrestricted 0.0 single_particle_sort 3300022604 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States - Rhizobiales bacterium JGI AMGPRD042217_6 DOE Joint Genome Institute (JGI) 3300022604 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 69807 86 0 0 0 0 SRX4411047 Unrestricted 0.0 single_particle_sort 3300016609 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Latescibacteria_bacterium_SCGC_AG-636-I09 DOE Joint Genome Institute (JGI) 3300016609 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Sediment Freshwater Unclassified Freshwater sediment 53.7598 107.9791 7.32 2513019 2375 0 0 0 0 SRX3784588 Unrestricted 0.0 single_particle_sort 3300015894 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-G22 DOE Joint Genome Institute (JGI) 3300015894 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 228752 312 0 0 0 0 SRX3548487 Unrestricted 0.0 single_particle_sort 3300032394 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.N6 DOE Joint Genome Institute (JGI) 3300032394 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 1875250 2787 0 0 0 0 SRX6433662 Unrestricted 0.0 single_particle_sort 3300021658 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.E11 DOE Joint Genome Institute (JGI) 3300021658 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 111341 134 0 0 0 0 SRX4009648 Unrestricted 0.0 single_particle_sort 3300034718 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.2.H6 DOE Joint Genome Institute (JGI) 3300034718 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 1658401 1770 0 0 0 0 SRX8390533 Unrestricted 0.0 single_particle_sort 3300032619 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.E11 DOE Joint Genome Institute (JGI) 3300032619 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 322272 359 1 0 1 0 SRX6429426 Unrestricted 0.0 single_particle_sort 3300015039 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.N9 DOE Joint Genome Institute (JGI) 3300015039 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 456447 536 1 0 1 0 Restricted 0.0 single_particle_sort 3300034550 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.J16 DOE Joint Genome Institute (JGI) 3300034550 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 547640 601 0 0 0 0 SRX8393328 Unrestricted 0.0 single_particle_sort 3300024087 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.E5 DOE Joint Genome Institute (JGI) 3300024087 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 818833 875 1 0 0 0 SRX4523615 Unrestricted 0.0 single_particle_sort 3300035835 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0815.Sybr.01.I19 DOE Joint Genome Institute (JGI) 3300035835 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 585246 691 1 0 1 0 SRX8894456 Unrestricted 0.0 single_particle_sort 3300019416 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16024 DOE Joint Genome Institute (JGI) 3300019416 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 1933567 2099 1 0 1 0 SRX3985679 Unrestricted 0.0 single_particle_sort 3300024810 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-F20 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024810 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 210397 260 0 0 0 0 0.0 single_particle_sort 3300015139 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-A08 DOE Joint Genome Institute (JGI) 3300015139 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 546189 636 1 0 0 0 SRX3578311 Unrestricted 0.0 single_particle_sort 3300033234 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.M15 DOE Joint Genome Institute (JGI) 3300033234 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 212711 252 1 0 1 0 SRX7630608 Unrestricted 0.0 single_particle_sort 3300023736 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.H21 DOE Joint Genome Institute (JGI) 3300023736 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 87490 99 0 0 0 0 SRX4390942 Unrestricted 0.0 single_particle_sort 3300022256 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - unknown_bacterium_SCGC_AH-147-F08 Bigelow Laboratory for Ocean Sciences 3300022256 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 6228 9 0 0 0 0 0.0 single_particle_sort 3300016554 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-B03 DOE Joint Genome Institute (JGI) 3300016554 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 1382573 1271 0 0 0 0 SRX3577110 Unrestricted 0.0 single_particle_sort 3300024591 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-L21 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024591 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 21278 20 0 0 0 0 0.0 single_particle_sort 3300035867 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.F21 DOE Joint Genome Institute (JGI) 3300035867 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 987936 1051 1 0 0 0 SRX8856772 Unrestricted 0.0 single_particle_sort 3300024610 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-G17 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024610 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 42931 51 0 0 0 0 0.0 single_particle_sort 3300033914 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.C18 DOE Joint Genome Institute (JGI) 3300033914 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 372523 420 1 0 1 0 SRX7626526 Unrestricted 0.0 single_particle_sort 3300023338 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.J17 DOE Joint Genome Institute (JGI) 3300023338 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 775546 818 1 0 1 0 SRX4548821 Unrestricted 0.0 single_particle_sort 3300016069 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-I15 DOE Joint Genome Institute (JGI) 3300016069 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 452045 551 0 0 0 0 SRX3563719 Unrestricted 0.0 single_particle_sort 3300021696 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.M18 DOE Joint Genome Institute (JGI) 3300021696 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 368382 414 0 0 0 0 SRX4009713 Unrestricted 0.0 single_particle_sort 3300023831 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.N12 DOE Joint Genome Institute (JGI) 3300023831 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 537225 590 0 0 0 0 SRX4548057 Unrestricted 0.0 single_particle_sort 3300019452 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent sediment, Guaymas Basin, Mexico - 6AD_4869_02_32 DOE Joint Genome Institute (JGI) 3300019452 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.001 -110.5998 16755725 17924 4 0 5 0 SRX3974424 Unrestricted 0.0 single_particle_sort 3300036637 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.I20 DOE Joint Genome Institute (JGI) 3300036637 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 908694 1005 1 0 0 0 SRX8904514 Unrestricted 0.0 single_particle_sort 3300016211 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-E14 DOE Joint Genome Institute (JGI) 3300016211 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 303669 368 0 0 1 0 SRX3562890 Unrestricted 0.0 single_particle_sort 3300018280 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_G5 DOE Joint Genome Institute (JGI) 3300018280 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 997160 997 0 0 0 0 SRX4649715 Unrestricted 0.0 single_particle_sort 3300019817 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-J16 DOE Joint Genome Institute (JGI) 3300019817 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 1653142 1603 0 0 1 0 SRX4663322 Unrestricted 0.0 single_particle_sort 3300038131 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.F18 DOE Joint Genome Institute (JGI) 3300038131 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 1234875 1260 1 0 1 0 SRX9411742 Unrestricted 0.0 single_particle_sort 3300022298 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - unknown_bacterium_SCGC_AH-147-G17 Bigelow Laboratory for Ocean Sciences 3300022298 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 1253175 1296 1 0 0 0 0.0 single_particle_sort 3300035820 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0813.Sybr.01.I16 DOE Joint Genome Institute (JGI) 3300035820 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 861754 952 0 0 0 0 SRX8894094 Unrestricted 0.0 single_particle_sort 3300016169 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-K06 DOE Joint Genome Institute (JGI) 3300016169 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 608788 688 0 0 1 0 SRX3562996 Unrestricted 0.0 single_particle_sort 3300023631 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.F22 DOE Joint Genome Institute (JGI) 3300023631 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 40885 58 0 0 0 0 SRX4547915 Unrestricted 0.0 single_particle_sort 3300010850 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Anoxic lake water microbial communities from Lake Kivu, Rwanda - MDM2.Kivu325.minimeta.J3 DOE Joint Genome Institute (JGI) 3300010850 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Unclassified Anoxic lake water -2.0288 29.1756 2428982 2473 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300038031 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.E21 DOE Joint Genome Institute (JGI) 3300038031 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 277629 298 0 0 0 0 SRX9411183 Unrestricted 0.0 single_particle_sort 3300038270 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.C19 DOE Joint Genome Institute (JGI) 3300038270 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 698595 905 0 0 0 0 SRX9411289 Unrestricted 0.0 single_particle_sort 3300015961 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-H16 DOE Joint Genome Institute (JGI) 3300015961 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 372820 428 0 0 0 0 SRX3548484 Unrestricted 0.0 single_particle_sort 3300035466 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_C14 DOE Joint Genome Institute (JGI) 3300035466 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 29647 37 0 0 0 0 SRX9539787 Unrestricted 0.0 single_particle_sort 3300019617 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-J11 DOE Joint Genome Institute (JGI) 3300019617 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 71600 89 0 0 0 0 SRX3562468 Unrestricted 0.0 single_particle_sort 3300019405 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16019 DOE Joint Genome Institute (JGI) 3300019405 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 1704949 1938 1 0 1 0 SRX3985673 Unrestricted 0.0 single_particle_sort 3300041168 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.G7 DOE Joint Genome Institute (JGI) 3300041168 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 388218 374 0 0 0 0 SRX9654282 Unrestricted 0.0 single_particle_sort 3300019663 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - archaeum_unknown_SCGC_AG-650-P06 DOE Joint Genome Institute (JGI) 3300019663 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 208658 241 0 0 0 0 SRX3959697 Unrestricted 0.0 single_particle_sort 3300035972 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.L12 DOE Joint Genome Institute (JGI) 3300035972 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 1147150 1191 1 0 1 0 SRX8854048 Unrestricted 0.0 single_particle_sort 3300034452 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.L13 DOE Joint Genome Institute (JGI) 3300034452 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 1579398 1609 1 0 1 0 SRX8389183 Unrestricted 0.0 single_particle_sort 3300036074 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_M11 DOE Joint Genome Institute (JGI) 3300036074 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 38185 52 0 0 0 0 SRX10046160 Unrestricted 0.0 single_particle_sort 3300041294 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.G15 DOE Joint Genome Institute (JGI) 3300041294 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2007164 1927 0 0 0 0 SRX9655272 Unrestricted 0.0 single_particle_sort 3300016184 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_I19 DOE Joint Genome Institute (JGI) 3300016184 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 630636 712 1 0 0 0 SRX4066474 Unrestricted 0.0 single_particle_sort 3300050830 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_F13_SVS DOE Joint Genome Institute (JGI) 3300050830 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 69907 92 0 0 0 0 Restricted 0.0 single_particle_sort 3300021683 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.J22 DOE Joint Genome Institute (JGI) 3300021683 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 203532 287 0 0 0 0 SRX3993416 Unrestricted 0.0 single_particle_sort 3300024623 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-C17 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024623 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 48566 60 0 0 0 0 0.0 single_particle_sort 3300022089 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.J17 DOE Joint Genome Institute (JGI) 3300022089 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1058564 1066 1 0 1 0 SRX3998130 Unrestricted 0.0 single_particle_sort 3300035768 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.E10 DOE Joint Genome Institute (JGI) 3300035768 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 724130 799 0 0 0 0 SRX8857993 Unrestricted 0.0 single_particle_sort 3300015982 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in well PM-3-1, Nye County Groundwater Evaluation Oasis Valley, Nevada, USA - unknown_bacterium_SCGC_AG-293-C06 DOE Joint Genome Institute (JGI) 3300015982 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole Groundwater 36.96 -116.72 7.18 383636 452 0 0 0 0 SRX3782058 Unrestricted 0.0 single_particle_sort 3300021757 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.N21 DOE Joint Genome Institute (JGI) 3300021757 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 657470 712 0 0 0 0 SRX3990642 Unrestricted 0.0 single_particle_sort 3300016084 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-J18 DOE Joint Genome Institute (JGI) 3300016084 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 490391 565 0 0 0 0 SRX3560711 Unrestricted 0.0 single_particle_sort 3300032494 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.H22 DOE Joint Genome Institute (JGI) 3300032494 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 519189 460 0 0 0 0 SRX6427739 Unrestricted 0.0 single_particle_sort 3300034617 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.J20 DOE Joint Genome Institute (JGI) 3300034617 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 613007 651 0 0 1 0 SRX8394782 Unrestricted 0.0 single_particle_sort 3300024823 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-I19 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024823 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 278422 327 0 0 0 0 0.0 single_particle_sort 3300049952 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_I22_SVS DOE Joint Genome Institute (JGI) 3300049952 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 61108 79 0 0 0 0 Restricted 0.0 single_particle_sort 3300019550 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-F04 DOE Joint Genome Institute (JGI) 3300019550 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 34927 40 0 0 0 0 SRX3560688 Unrestricted 0.0 single_particle_sort 3300035813 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_L16 DOE Joint Genome Institute (JGI) 3300035813 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 24234 34 0 0 0 0 SRX10045769 Unrestricted 0.0 single_particle_sort 3300019792 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-I15 DOE Joint Genome Institute (JGI) 3300019792 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 64445 80 0 0 0 0 SRX4663272 Unrestricted 0.0 single_particle_sort 3300041650 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.K13 DOE Joint Genome Institute (JGI) 3300041650 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1342066 1450 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300036738 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.F11.redo DOE Joint Genome Institute (JGI) 3300036738 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 2225469 2568 1 0 1 0 SRX8908914 Unrestricted 0.0 single_particle_sort 3300050825 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_D21_SVS DOE Joint Genome Institute (JGI) 3300050825 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 118554 99 0 0 0 0 Restricted 0.0 single_particle_sort 3300071185 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_edMDA_F06_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071185 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 838818 864 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023355 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.N16 DOE Joint Genome Institute (JGI) 3300023355 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1436936 1570 1 0 1 0 SRX4520606 Unrestricted 0.0 single_particle_sort 3300036025 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_E20 DOE Joint Genome Institute (JGI) 3300036025 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 98731 127 0 0 0 0 SRX10046741 Unrestricted 0.0 single_particle_sort 3300035896 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.I14 DOE Joint Genome Institute (JGI) 3300035896 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 431263 409 0 0 0 0 SRX8898657 Unrestricted 0.0 single_particle_sort 3300021820 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.C13 DOE Joint Genome Institute (JGI) 3300021820 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1131110 1126 0 0 0 0 SRX3989600 Unrestricted 0.0 single_particle_sort 3300024880 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.I19 DOE Joint Genome Institute (JGI) 3300024880 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 173994 228 0 0 0 0 SRX4390370 Unrestricted 0.0 single_particle_sort 3300018359 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Ignavibacteria_bacterium_SCGC_AG-650-E05 DOE Joint Genome Institute (JGI) 3300018359 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1730702 1606 1 0 1 0 SRX3981455 Unrestricted 0.0 single_particle_sort 3300022624 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Acidobacteriales bacterium JGI PCGPRD042217_24 DOE Joint Genome Institute (JGI) 3300022624 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 641863 656 1 0 2 0 SRX4415198 Unrestricted 0.0 single_particle_sort 3300023795 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.G9 DOE Joint Genome Institute (JGI) 3300023795 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 383698 404 1 0 1 0 SRX4548025 Unrestricted 0.0 single_particle_sort 3300034528 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P8_D2 DOE Joint Genome Institute (JGI) 3300034528 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 15249 18 0 0 0 0 SRX8136549 Unrestricted 0.0 single_particle_sort 3300016629 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - BRC1_bacterium_SCGC_AG-636-I02 DOE Joint Genome Institute (JGI) 3300016629 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Sediment Freshwater Unclassified Freshwater sediment 53.7598 107.9791 7.32 3133646 2942 0 0 1 0 SRX3784355 Unrestricted 0.0 single_particle_sort 3300021620 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.D17 DOE Joint Genome Institute (JGI) 3300021620 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 37756 43 0 0 0 0 SRX4009708 Unrestricted 0.0 single_particle_sort 3300024680 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-D20 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024680 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 97823 109 0 0 0 0 0.0 single_particle_sort 3300019971 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-E6 DOE Joint Genome Institute (JGI) 3300019971 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 409728 476 0 0 0 0 SRX4654447 Unrestricted 0.0 single_particle_sort 3300021635 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.K16 DOE Joint Genome Institute (JGI) 3300021635 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 56938 78 0 0 1 0 SRX4009688 Unrestricted 0.0 single_particle_sort 3300035858 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.G10 DOE Joint Genome Institute (JGI) 3300035858 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 662847 740 0 0 0 0 SRX8897081 Unrestricted 0.0 single_particle_sort 3300010828 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_44_SCGC_AG-138-O18 DOE Joint Genome Institute (JGI) 3300010828 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 556903 747 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300016281 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-574-J18 DOE Joint Genome Institute (JGI) 3300016281 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 637696 717 1 0 0 0 SRX3578847 Unrestricted 0.0 single_particle_sort 3300041191 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.1.E12 DOE Joint Genome Institute (JGI) 3300041191 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 58968 74 0 0 0 0 SRX9654898 Unrestricted 0.0 single_particle_sort 3300018210 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_K10 DOE Joint Genome Institute (JGI) 3300018210 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 564476 583 0 0 0 0 SRX4652223 Unrestricted 0.0 single_particle_sort 3300014034 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.M11 DOE Joint Genome Institute (JGI) 3300014034 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1004029 1261 1 0 1 0 SRX3366684 Unrestricted 0.0 single_particle_sort 3300016345 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-F09 DOE Joint Genome Institute (JGI) 3300016345 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 670126 826 1 0 0 0 SRX3540194 Unrestricted 0.0 single_particle_sort 3300023929 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.J20 DOE Joint Genome Institute (JGI) 3300023929 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 1075700 1145 1 0 1 0 SRX4549241 Unrestricted 0.0 single_particle_sort 3300022282 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - unknown_bacterium_SCGC_AH-151-B11 Bigelow Laboratory for Ocean Sciences 3300022282 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 1148494 1079 1 0 1 0 0.0 single_particle_sort 3300014343 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.C05 DOE Joint Genome Institute (JGI) 3300014343 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1968573 1909 0 0 0 0 SRX3366790 Unrestricted 0.0 single_particle_sort 3300023402 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.K17 DOE Joint Genome Institute (JGI) 3300023402 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 410117 412 0 0 0 0 SRX4548984 Unrestricted 0.0 single_particle_sort 3300021835 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.F17 DOE Joint Genome Institute (JGI) 3300021835 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 2669663 2784 1 0 1 0 SRX3989635 Unrestricted 0.0 single_particle_sort 3300021667 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.E11 DOE Joint Genome Institute (JGI) 3300021667 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 210819 235 0 0 0 0 SRX4005523 Unrestricted 0.0 single_particle_sort 3300019393 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16011 DOE Joint Genome Institute (JGI) 3300019393 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 1285717 1334 1 0 1 0 SRX3985667 Unrestricted 0.0 single_particle_sort 3300050874 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_C20_SVS DOE Joint Genome Institute (JGI) 3300050874 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 41719 70 0 0 0 0 Restricted 0.0 single_particle_sort 3300041091 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.K9 DOE Joint Genome Institute (JGI) 3300041091 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 554226 608 0 0 0 0 SRX9654483 Unrestricted 0.0 single_particle_sort 3300035791 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.J19 DOE Joint Genome Institute (JGI) 3300035791 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 656657 744 0 0 0 0 SRX8859677 Unrestricted 0.0 single_particle_sort 3300035948 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.F16 DOE Joint Genome Institute (JGI) 3300035948 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1651547 1764 0 0 1 0 SRX8862639 Unrestricted 0.0 single_particle_sort 3300019687 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown archaeum SCGC_AG-574-P09 DOE Joint Genome Institute (JGI) 3300019687 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 586371 721 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300037922 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.E15 DOE Joint Genome Institute (JGI) 3300037922 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 338892 441 0 0 0 0 SRX9410434 Unrestricted 0.0 single_particle_sort 3300036030 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_M20 DOE Joint Genome Institute (JGI) 3300036030 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 150350 193 0 0 0 0 SRX10076380 Unrestricted 0.0 single_particle_sort 3300016262 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Parcubacteria bacterium SCGC_AG-278-F17 DOE Joint Genome Institute (JGI) 3300016262 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 593451 651 0 0 1 0 SRX3578381 Unrestricted 0.0 single_particle_sort 3300015447 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-L06 DOE Joint Genome Institute (JGI) 3300015447 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 121486 155 0 0 0 0 SRX3550855 Unrestricted 0.0 single_particle_sort 3300022119 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.H8 DOE Joint Genome Institute (JGI) 3300022119 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 2390859 2195 1 0 1 0 SRX3998109 Unrestricted 0.0 single_particle_sort 3300038234 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.I17 DOE Joint Genome Institute (JGI) 3300038234 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 614021 703 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300034753 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.2.J15 DOE Joint Genome Institute (JGI) 3300034753 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 1672771 1743 1 0 1 0 SRX8390296 Unrestricted 0.0 single_particle_sort 3300010760 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.L12 DOE Joint Genome Institute (JGI) 3300010760 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 169674 230 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300016114 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacterium bacterium SCGC_AG-582-A14 DOE Joint Genome Institute (JGI) 3300016114 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 493442 603 2 0 0 0 SRX3579942 Unrestricted 0.0 single_particle_sort 3300021613 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.K14 DOE Joint Genome Institute (JGI) 3300021613 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 34300 38 0 0 0 0 SRX4009661 Unrestricted 0.0 single_particle_sort 3300018459 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - archaeum_unknown_SCGC_AG-650-P07 DOE Joint Genome Institute (JGI) 3300018459 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1482502 1376 0 0 0 0 SRX4815284 Unrestricted 0.0 single_particle_sort 3300022019 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - Acetothermia bacterium JGI MDM2 NGM80-2-F20 DOE Joint Genome Institute (JGI) 3300022019 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 600343 727 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300019386 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent microbial mat, Guaymas Basin, Mexico - 6C_4862_10_11 DOE Joint Genome Institute (JGI) 3300019386 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.001 -110.5998 477227 564 0 0 0 0 SRX3974060 Unrestricted 0.0 single_particle_sort 3300015998 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Microgenometes bacterium SCGC_AG-274-C06 DOE Joint Genome Institute (JGI) 3300015998 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 401948 468 1 0 1 0 SRX3578241 Unrestricted 0.0 single_particle_sort 3300036755 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.H21.redo DOE Joint Genome Institute (JGI) 3300036755 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 2021095 2311 1 0 1 0 SRX8910425 Unrestricted 0.0 single_particle_sort 3300015741 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-I19 DOE Joint Genome Institute (JGI) 3300015741 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 90094 134 0 0 0 0 SRX3561055 Unrestricted 0.0 single_particle_sort 3300015912 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-J18 DOE Joint Genome Institute (JGI) 3300015912 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 307479 365 0 0 0 0 SRX3562955 Unrestricted 0.0 single_particle_sort 3300033969 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.N16 DOE Joint Genome Institute (JGI) 3300033969 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 481322 512 0 0 0 0 SRX7630396 Unrestricted 0.0 single_particle_sort 3300022261 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Hadesarchaea_archaeum_SCGC_AH-151-O08 Bigelow Laboratory for Ocean Sciences 3300022261 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 325998 405 1 0 1 0 0.0 single_particle_sort 3300016014 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Omnitrophica bacterium SCGC_AG-657-J06 DOE Joint Genome Institute (JGI) 3300016014 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 492139 484 0 0 0 0 SRX3601368 Unrestricted 0.0 single_particle_sort 3300023455 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.D8 DOE Joint Genome Institute (JGI) 3300023455 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 191585 275 0 0 0 0 SRX4548730 Unrestricted 0.0 single_particle_sort 3300021813 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.I12 DOE Joint Genome Institute (JGI) 3300021813 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 792761 918 0 0 1 0 SRX3989568 Unrestricted 0.0 single_particle_sort 3300035757 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.M18 DOE Joint Genome Institute (JGI) 3300035757 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 697841 669 0 0 0 0 SRX8900925 Unrestricted 0.0 single_particle_sort 3300010727 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_21_SCGC_AG-159-G17 DOE Joint Genome Institute (JGI) 3300010727 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 72075 93 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015232 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - unknown bacterium SCGC_AG-290-K18 DOE Joint Genome Institute (JGI) 3300015232 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 598565 776 0 0 0 0 SRX3578742 Unrestricted 0.0 single_particle_sort 3300035883 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.I21 DOE Joint Genome Institute (JGI) 3300035883 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1684013 1771 0 0 1 0 SRX8857418 Unrestricted 0.0 single_particle_sort 3300015673 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Jinze hot spring sediment, Tengchong, China - JNZ.1.2014 1216 MDM2 JNZ p1 16S.L15.double-seq DOE Joint Genome Institute (JGI) 3300015673 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 25.4413 98.46 1024355 1282 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033270 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Ontario, Canada - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.M8 DOE Joint Genome Institute (JGI) 3300033270 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 143043 156 0 0 0 0 SRX7630686 Unrestricted 0.0 single_particle_sort 3300019493 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Rhodospirillaceae bacterium HL7711_P1E10 JGI 000155CP-I19 DOE Joint Genome Institute (JGI) 3300019493 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 290859 283 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300015846 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Gemmatamonidetes bacterium SCGC_AG-582-F03 DOE Joint Genome Institute (JGI) 3300015846 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 117948 122 2 0 1 0 SRX3579958 Unrestricted 0.0 single_particle_sort 3300014443 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.J17 DOE Joint Genome Institute (JGI) 3300014443 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1001196 1221 1 0 1 0 SRX3367725 Unrestricted 0.0 single_particle_sort 3300041628 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.J18 DOE Joint Genome Institute (JGI) 3300041628 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 3097159 3005 1 0 1 0 SRX14835646 Unrestricted 0.0 single_particle_sort 3300021768 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.G8 DOE Joint Genome Institute (JGI) 3300021768 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 766549 815 0 0 0 0 SRX4009598 Unrestricted 0.0 single_particle_sort 3300041157 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.J17 DOE Joint Genome Institute (JGI) 3300041157 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1209767 1234 1 0 0 0 SRX9675181 Unrestricted 0.0 single_particle_sort 3300015956 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-578-J03 DOE Joint Genome Institute (JGI) 3300015956 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 384446 420 1 0 0 0 SRX3579215 Unrestricted 0.0 single_particle_sort 3300015873 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacterium bacterium SCGC_AG-582-G16 DOE Joint Genome Institute (JGI) 3300015873 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 199446 248 1 0 0 0 SRX3579965 Unrestricted 0.0 single_particle_sort 3300015646 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Jinze hot spring sediment, Tengchong, China - JNZ.1.2014 1216 MDM2 JNZ p1 16S.N19.double-peak DOE Joint Genome Institute (JGI) 3300015646 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 25.4413 98.46 753326 715 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300019528 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from Echinus Geyser water, Yellowstone National Park, Wyoming, United States - Geoarchaeota archaeon JGI 000156CP-G12 DOE Joint Genome Institute (JGI) 3300019528 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Acidic hot water 44.7225 -110.7014 3145100 3669 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300041321 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.L19 DOE Joint Genome Institute (JGI) 3300041321 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 844316 902 0 0 1 0 SRX9646853 Unrestricted 0.0 single_particle_sort 3300032664 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.F16 DOE Joint Genome Institute (JGI) 3300032664 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 415818 458 0 0 0 0 SRX6655746 Unrestricted 0.0 single_particle_sort 3300018223 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_L12 DOE Joint Genome Institute (JGI) 3300018223 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 565832 627 0 0 0 0 SRX4652228 Unrestricted 0.0 single_particle_sort 3300014476 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.J10 DOE Joint Genome Institute (JGI) 3300014476 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1461829 1716 1 0 1 0 SRX3367727 Unrestricted 0.0 single_particle_sort 3300010832 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.04.N7 DOE Joint Genome Institute (JGI) 3300010832 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 659452 771 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300024636 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-I16 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024636 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 44672 70 0 0 0 0 0.0 single_particle_sort 3300033311 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.I8 DOE Joint Genome Institute (JGI) 3300033311 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 350605 408 0 0 0 0 SRX7630529 Unrestricted 0.0 single_particle_sort 3300050805 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_N20_SVS DOE Joint Genome Institute (JGI) 3300050805 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 52945 69 0 0 0 0 Restricted 0.0 single_particle_sort 3300037938 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.D18 DOE Joint Genome Institute (JGI) 3300037938 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 802917 869 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300023153 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.L8 DOE Joint Genome Institute (JGI) 3300023153 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1426335 1458 1 0 1 0 SRX4509210 Unrestricted 0.0 single_particle_sort 3300019430 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16043 DOE Joint Genome Institute (JGI) 3300019430 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 2292623 2638 1 0 1 0 SRX3987208 Unrestricted 0.0 single_particle_sort 3300024836 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-P05 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024836 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 52686 47 0 0 0 0 0.0 single_particle_sort 3300032346 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.F5 DOE Joint Genome Institute (JGI) 3300032346 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 431077 410 0 0 0 0 SRX6433376 Unrestricted 0.0 single_particle_sort 3300014414 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.M13 DOE Joint Genome Institute (JGI) 3300014414 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 552887 728 0 0 1 0 SRX3368147 Unrestricted 0.0 single_particle_sort 3300019425 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16022 DOE Joint Genome Institute (JGI) 3300019425 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 2164100 2411 1 0 1 0 SRX3985675 Unrestricted 0.0 single_particle_sort 3300023596 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.I4 DOE Joint Genome Institute (JGI) 3300023596 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 644374 597 0 0 1 0 SRX4547977 Unrestricted 0.0 single_particle_sort 3300035479 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_M16 DOE Joint Genome Institute (JGI) 3300035479 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 27114 27 0 0 0 0 SRX9540271 Unrestricted 0.0 single_particle_sort 3300024731 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-P22 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024731 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 126585 154 0 0 0 0 0.0 single_particle_sort 3300016043 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-I13 DOE Joint Genome Institute (JGI) 3300016043 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 406577 525 0 0 0 0 SRX3563717 Unrestricted 0.0 single_particle_sort 3300016548 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from underground thermal water from 5P borehole, Tomsk, Russia - unknown_bacterium_SCGC_AG-717-M09 DOE Joint Genome Institute (JGI) 3300016548 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole Groundwater 58.0758 82.8374 7.49-7.6 1151033 958 1 0 1 0 SRX3783260 Unrestricted 0.0 single_particle_sort 3300024603 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-C23 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024603 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 37344 38 0 0 0 0 0.0 single_particle_sort 3300036086 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_N15 DOE Joint Genome Institute (JGI) 3300036086 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 51263 73 0 0 0 0 SRX10046422 Unrestricted 0.0 single_particle_sort 3300016176 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG-582-N08 DOE Joint Genome Institute (JGI) 3300016176 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 609893 704 1 0 0 0 SRX3580025 Unrestricted 0.0 single_particle_sort 3300022950 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.J17 DOE Joint Genome Institute (JGI) 3300022950 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 96037 131 0 0 0 0 SRX4454610 Unrestricted 0.0 single_particle_sort 3300016334 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in well PM-3-1, Nye County Groundwater Evaluation Oasis Valley, Nevada, USA - unknown_bacterium_SCGC_AG-293-L20 DOE Joint Genome Institute (JGI) 3300016334 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole Groundwater 36.96 -116.72 7.18 874099 807 1 0 1 0 SRX3781666 Unrestricted 0.0 single_particle_sort 3300022640 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States - Rhizobiales bacterium JGI AMGPRD042217_2 DOE Joint Genome Institute (JGI) 3300022640 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 12374142 14528 0 0 1 0 SRX4410820 Unrestricted 0.0 single_particle_sort 3300034532 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P8_I4 DOE Joint Genome Institute (JGI) 3300034532 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 5340 6 0 0 0 0 SRX8136691 Unrestricted 0.0 single_particle_sort 3300026605 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-O21 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026605 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 103822 128 0 0 0 0 0.0 single_particle_sort 3300015489 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-B06 DOE Joint Genome Institute (JGI) 3300015489 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 226552 293 0 0 0 0 SRX3556433 Unrestricted 0.0 single_particle_sort 3300033763 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P2_N10 DOE Joint Genome Institute (JGI) 3300033763 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 9621 15 0 0 0 0 SRX7525341 Unrestricted 0.0 single_particle_sort 3300024803 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-C19 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024803 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 191138 249 0 0 0 0 0.0 single_particle_sort 3300018295 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Actinobacteria_bacterium_SCGC_AG-650-E02 DOE Joint Genome Institute (JGI) 3300018295 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1230298 1189 1 0 1 0 SRX3978083 Unrestricted 0.0 single_particle_sort 3300016076 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacterium bacterium SCGC_AG-582-N21 DOE Joint Genome Institute (JGI) 3300016076 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 507812 558 1 0 1 0 SRX3580060 Unrestricted 0.0 single_particle_sort 3300071320 *Microbiome Permanent Draft Comparing whole genome amplification chemistries for bacterial single cell genomics Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - scBac_PTA_EnviBac_sc_plate3well3E_S13 Stanford University 3300071320 Metagenome - Single Particle Sort Spades v. 3.15.3 released per request -- IMGSUPP-4358 No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 2959858 3279 1 0 1 0 0.0 single_particle_sort 3300021644 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.D22 DOE Joint Genome Institute (JGI) 3300021644 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 70450 95 0 0 0 0 SRX4009725 Unrestricted 0.0 single_particle_sort 3300016143 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-I22 DOE Joint Genome Institute (JGI) 3300016143 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 691396 650 0 0 0 0 SRX3578190 Unrestricted 0.0 single_particle_sort 3300036598 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.I4 DOE Joint Genome Institute (JGI) 3300036598 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 998551 1100 0 0 0 0 SRX8901430 Unrestricted 0.0 single_particle_sort 3300041273 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.E16 DOE Joint Genome Institute (JGI) 3300041273 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2094359 2210 1 0 1 0 SRX9677093 Unrestricted 0.0 single_particle_sort 3300036093 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_G18 DOE Joint Genome Institute (JGI) 3300036093 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 59447 77 0 0 0 0 SRX10046520 Unrestricted 0.0 single_particle_sort 3300041632 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.L14 DOE Joint Genome Institute (JGI) 3300041632 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 3111946 3079 1 0 0 0 SRX14835710 Unrestricted 0.0 single_particle_sort 3300033717 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P2_C11 DOE Joint Genome Institute (JGI) 3300033717 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 26218 45 0 0 0 0 SRX7525392 Unrestricted 0.0 single_particle_sort 3300018371 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_H15 DOE Joint Genome Institute (JGI) 3300018371 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 1933972 1795 0 0 1 0 SRX4646717 Unrestricted 0.0 single_particle_sort 3300015228 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - unknown bacterium SCGC_AG-290-P20 DOE Joint Genome Institute (JGI) 3300015228 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 468464 590 0 0 1 0 SRX3578797 Unrestricted 0.0 single_particle_sort 3300019959 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-C16 DOE Joint Genome Institute (JGI) 3300019959 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 259214 309 0 0 0 0 SRX4653701 Unrestricted 0.0 single_particle_sort 3300019649 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-B18 DOE Joint Genome Institute (JGI) 3300019649 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 125226 158 0 0 0 0 SRX3549160 Unrestricted 0.0 single_particle_sort 3300015464 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-E18 DOE Joint Genome Institute (JGI) 3300015464 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 148031 189 1 0 0 0 SRX3560065 Unrestricted 0.0 single_particle_sort 3300023583 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.H18 DOE Joint Genome Institute (JGI) 3300023583 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 209009 206 0 0 0 0 SRX4547916 Unrestricted 0.0 single_particle_sort 3300035800 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.N18 DOE Joint Genome Institute (JGI) 3300035800 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 412117 482 0 0 0 0 SRX8861267 Unrestricted 0.0 single_particle_sort 3300023723 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.F8 DOE Joint Genome Institute (JGI) 3300023723 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 60653 89 0 0 0 0 SRX4500599 Unrestricted 0.0 single_particle_sort 3300041246 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.D13 DOE Joint Genome Institute (JGI) 3300041246 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2482364 2441 1 0 1 0 SRX9651530 Unrestricted 0.0 single_particle_sort 3300038245 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.H21 DOE Joint Genome Institute (JGI) 3300038245 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 686108 688 1 0 1 0 SRX9411120 Unrestricted 0.0 single_particle_sort 3300019532 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Leptolyngbya sp. HL7711_P1F1 JGI 000148CP-K16 DOE Joint Genome Institute (JGI) 3300019532 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 3785221 3748 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300032473 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.H14 DOE Joint Genome Institute (JGI) 3300032473 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 656007 740 0 0 0 0 SRX6429242 Unrestricted 0.0 single_particle_sort 3300050816 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_P14_SVS DOE Joint Genome Institute (JGI) 3300050816 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 61841 68 0 0 0 0 Restricted 0.0 single_particle_sort 3300048753 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_D3_SVS DOE Joint Genome Institute (JGI) 3300048753 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 68403 114 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300050942 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-956-G04 DOE Joint Genome Institute (JGI) 3300050942 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1197303 -42.124435 1555959 1633 1 0 1 0 Restricted 0.0 single_particle_sort 3300015389 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - unknown archaeum SCGC_AG-128-J14 DOE Joint Genome Institute (JGI) 3300015389 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 525033 660 0 0 1 0 SRX3577027 Unrestricted 0.0 single_particle_sort 3300071190 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_edMDA_A04_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071190 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 781792 784 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300016434 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Omnitrophica bacterium SCGC_AG-574-M09 DOE Joint Genome Institute (JGI) 3300016434 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 1384990 1191 1 0 1 0 SRX3579777 Unrestricted 0.0 single_particle_sort 3300071313 *Microbiome Permanent Draft Comparing whole genome amplification chemistries for bacterial single cell genomics Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - scBac_Watchmaker_EnviBac_sc_well3C_S80 Stanford University 3300071313 Metagenome - Single Particle Sort Spades v. 3.15.3 released per request -- IMGSUPP-4358 No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 624804 662 1 0 1 0 0.0 single_particle_sort 3300024365 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Burkholderia bacterium JGI PFNR15_H18 DOE Joint Genome Institute (JGI) 3300024365 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 31917 45 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300032647 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.M6 DOE Joint Genome Institute (JGI) 3300032647 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 119602 143 0 0 1 0 SRX6431001 Unrestricted 0.0 single_particle_sort 3300021107 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted archaeal cell/s from hot spring water in Nymph Lake, Yellowstone National Park, Wyoming, USA - Nanoarchaeota archaeon AD-903-M13 Oregon State University 3300021107 Metagenome - Single Particle Sort Spades v2.2.1 Manuscript to be submitted soon No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring water 44.75187 -110.7288 83371 105 0 0 0 0 0.0 single_particle_sort 3300034430 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.M4 DOE Joint Genome Institute (JGI) 3300034430 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 199314 238 0 0 0 0 SRX8389155 Unrestricted 0.0 single_particle_sort 3300050852 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_L22_SVS DOE Joint Genome Institute (JGI) 3300050852 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 102229 115 0 0 0 0 Restricted 0.0 single_particle_sort 3300033300 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.L4 DOE Joint Genome Institute (JGI) 3300033300 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 263463 328 0 0 1 0 SRX7630477 Unrestricted 0.0 single_particle_sort 3300038033 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.05.L13 DOE Joint Genome Institute (JGI) 3300038033 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 671241 735 1 0 1 0 SRX9411193 Unrestricted 0.0 single_particle_sort 3300015963 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Omnitrophica bacterium SCGC_AG-582-F08 DOE Joint Genome Institute (JGI) 3300015963 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 497083 432 1 0 1 0 SRX3579963 Unrestricted 0.0 single_particle_sort 3300023633 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.G8 DOE Joint Genome Institute (JGI) 3300023633 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 96009 110 0 0 0 0 SRX4548007 Unrestricted 0.0 single_particle_sort 3300016213 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown archaeum SCGC_AG-278-D07 DOE Joint Genome Institute (JGI) 3300016213 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 235973 372 0 0 0 0 SRX3578356 Unrestricted 0.0 single_particle_sort 3300041380 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.J9 DOE Joint Genome Institute (JGI) 3300041380 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1124647 1064 0 0 1 0 SRX9645385 Unrestricted 0.0 single_particle_sort 3300038133 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.H6 DOE Joint Genome Institute (JGI) 3300038133 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 1154560 1543 0 0 0 0 SRX9411722 Unrestricted 0.0 single_particle_sort 3300019682 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - archaeum_unknown_SCGC_AG-650-B13 DOE Joint Genome Institute (JGI) 3300019682 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 468390 590 0 0 0 0 SRX4815112 Unrestricted 0.0 single_particle_sort 3300037927 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.I7 DOE Joint Genome Institute (JGI) 3300037927 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 75442 121 0 0 0 0 SRX9410432 Unrestricted 0.0 single_particle_sort 3300022287 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - unknown_bacterium_SCGC_AH-151-N14 Bigelow Laboratory for Ocean Sciences 3300022287 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 796237 823 0 0 0 0 0.0 single_particle_sort 3300023833 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.J21 DOE Joint Genome Institute (JGI) 3300023833 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 537890 606 0 0 0 0 SRX4526112 Unrestricted 0.0 single_particle_sort 3300021662 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.I13 DOE Joint Genome Institute (JGI) 3300021662 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 139804 180 0 0 0 0 SRX4005577 Unrestricted 0.0 single_particle_sort 3300023407 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.E10 DOE Joint Genome Institute (JGI) 3300023407 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 711577 755 1 0 1 0 SRX4519652 Unrestricted 0.0 single_particle_sort 3300018124 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_L20 DOE Joint Genome Institute (JGI) 3300018124 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 348117 351 0 0 1 0 SRX4646797 Unrestricted 0.0 single_particle_sort 3300015540 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-F13 DOE Joint Genome Institute (JGI) 3300015540 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 462458 552 0 0 0 0 SRX3560052 Unrestricted 0.0 single_particle_sort 3300024593 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-B04 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024593 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 27250 31 0 0 0 0 0.0 single_particle_sort 3300038006 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.L13 DOE Joint Genome Institute (JGI) 3300038006 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 96886 160 0 0 0 0 SRX9409782 Unrestricted 0.0 single_particle_sort 3300024098 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.H4 DOE Joint Genome Institute (JGI) 3300024098 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 1095763 1207 1 0 1 0 SRX4523762 Unrestricted 0.0 single_particle_sort 3300035705 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_L9 DOE Joint Genome Institute (JGI) 3300035705 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 22421 26 0 0 0 0 SRX10045424 Unrestricted 0.0 single_particle_sort 3300033185 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.G20 DOE Joint Genome Institute (JGI) 3300033185 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 1115056 1178 0 0 1 0 SRX7630256 Unrestricted 0.0 single_particle_sort 3300033879 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.K21 DOE Joint Genome Institute (JGI) 3300033879 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 453635 511 0 0 1 0 SRX7626817 Unrestricted 0.0 single_particle_sort 3300023606 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.F9 DOE Joint Genome Institute (JGI) 3300023606 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 646907 794 0 0 1 0 SRX4415597 Unrestricted 0.0 single_particle_sort 3300050989 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_P2_SVS DOE Joint Genome Institute (JGI) 3300050989 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 55839 72 0 0 0 0 Restricted 0.0 single_particle_sort 3300038106 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .E23 DOE Joint Genome Institute (JGI) 3300038106 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 24264 32 0 0 0 0 SRX9411636 Unrestricted 0.0 single_particle_sort 3300024198 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Luteibacter bacterium JGI PFNR15_H18 DOE Joint Genome Institute (JGI) 3300024198 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 687452 727 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300041105 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.D9 DOE Joint Genome Institute (JGI) 3300041105 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1286411 1287 0 0 0 0 SRX9654412 Unrestricted 0.0 single_particle_sort 3300033679 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P9_L13 DOE Joint Genome Institute (JGI) 3300033679 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 5553 10 0 0 0 0 SRX7531296 Unrestricted 0.0 single_particle_sort 3300013889 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.M08 DOE Joint Genome Institute (JGI) 3300013889 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 395013 541 0 0 0 0 SRX3366683 Unrestricted 0.0 single_particle_sort 3300023806 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.K11 DOE Joint Genome Institute (JGI) 3300023806 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 435569 466 0 0 1 0 SRX4519580 Unrestricted 0.0 single_particle_sort 3300021793 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.I8 DOE Joint Genome Institute (JGI) 3300021793 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 397137 440 0 0 1 0 SRX3989965 Unrestricted 0.0 single_particle_sort 3300026595 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-I11 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026595 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 80126 117 0 0 0 0 0.0 single_particle_sort 3300016220 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Peregrinibacteria bacterium SCGC_AG-574-G22 DOE Joint Genome Institute (JGI) 3300016220 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 419092 417 0 0 0 0 SRX3578850 Unrestricted 0.0 single_particle_sort 3300036608 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.C9 DOE Joint Genome Institute (JGI) 3300036608 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 291531 328 0 0 0 0 SRX8902470 Unrestricted 0.0 single_particle_sort 3300035752 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.N21 DOE Joint Genome Institute (JGI) 3300035752 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 774978 817 0 0 0 0 SRX8857593 Unrestricted 0.0 single_particle_sort 3300024586 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-B13 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024586 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 18891 21 0 0 0 0 0.0 single_particle_sort 3300071234 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_WGAX_B10_scBac_plate.C DOE Joint Genome Institute (JGI) 3300071234 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 183231 223 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300050964 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_I6_SVS DOE Joint Genome Institute (JGI) 3300050964 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 92559 86 0 0 0 0 Restricted 0.0 single_particle_sort 3300010722 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.04.L10 DOE Joint Genome Institute (JGI) 3300010722 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 46258 60 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015237 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - SM2F11 bacterium SCGC_AG-290-C11 DOE Joint Genome Institute (JGI) 3300015237 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 883545 982 1 0 0 0 SRX3578541 Unrestricted 0.0 single_particle_sort 3300034468 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.J21 DOE Joint Genome Institute (JGI) 3300034468 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 511556 609 0 0 0 0 SRX8389559 Unrestricted 0.0 single_particle_sort 3300021786 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.C12 DOE Joint Genome Institute (JGI) 3300021786 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 2264005 2364 1 0 1 0 SRX3990135 Unrestricted 0.0 single_particle_sort 3300024726 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-L19 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024726 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 128501 150 0 0 0 0 0.0 single_particle_sort 3300041152 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.C10 DOE Joint Genome Institute (JGI) 3300041152 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1070965 1060 0 0 0 0 SRX9654280 Unrestricted 0.0 single_particle_sort 3300035811 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_D14 DOE Joint Genome Institute (JGI) 3300035811 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 39792 60 0 0 0 0 SRX10045709 Unrestricted 0.0 single_particle_sort 3300048994 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_E11_SVS DOE Joint Genome Institute (JGI) 3300048994 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 3147 8 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023615 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.I20 DOE Joint Genome Institute (JGI) 3300023615 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 849519 983 0 0 0 0 SRX4415598 Unrestricted 0.0 single_particle_sort 3300024821 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-D02 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024821 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 253179 310 0 0 0 0 0.0 single_particle_sort 3300016267 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG-574-M13 DOE Joint Genome Institute (JGI) 3300016267 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 594794 655 1 0 1 0 SRX3579049 Unrestricted 0.0 single_particle_sort 3300038015 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.C15 DOE Joint Genome Institute (JGI) 3300038015 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 843998 1165 0 0 0 0 SRX9410331 Unrestricted 0.0 single_particle_sort 3300035716 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_H14 DOE Joint Genome Institute (JGI) 3300035716 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 70968 78 0 0 0 0 SRX10045710 Unrestricted 0.0 single_particle_sort 3300015442 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-M22 DOE Joint Genome Institute (JGI) 3300015442 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 110065 136 0 0 0 0 SRX3560361 Unrestricted 0.0 single_particle_sort 3300023815 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.J5 DOE Joint Genome Institute (JGI) 3300023815 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 366606 504 0 0 0 0 SRX4519578 Unrestricted 0.0 single_particle_sort 3300021681 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.E17 DOE Joint Genome Institute (JGI) 3300021681 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 243944 278 0 0 0 0 SRX4006786 Unrestricted 0.0 single_particle_sort 3300024621 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-E17 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024621 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 52419 57 0 0 0 0 0.0 single_particle_sort 3300018394 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_C15 DOE Joint Genome Institute (JGI) 3300018394 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 2181734 2118 0 0 0 0 SRX4649173 Unrestricted 0.0 single_particle_sort 3300016235 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-574-B03 DOE Joint Genome Institute (JGI) 3300016235 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 452545 490 1 0 1 0 SRX3578800 Unrestricted 0.0 single_particle_sort 3300041116 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.E19 DOE Joint Genome Institute (JGI) 3300041116 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 366994 413 0 0 0 0 SRX9654600 Unrestricted 0.0 single_particle_sort 3300019661 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Omnitrophica bacterium SCGC_AG-657-P22 DOE Joint Genome Institute (JGI) 3300019661 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 204969 224 0 0 0 0 SRX3903468 Unrestricted 0.0 single_particle_sort 3300049968 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_L9_SVS DOE Joint Genome Institute (JGI) 3300049968 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 90842 103 0 0 0 0 Restricted 0.0 single_particle_sort 3300038115 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .K8 DOE Joint Genome Institute (JGI) 3300038115 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 226752 305 0 0 0 0 SRX9411639 Unrestricted 0.0 single_particle_sort 3300015917 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-188-M04 DOE Joint Genome Institute (JGI) 3300015917 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 386300 371 1 0 0 0 SRX3578196 Unrestricted 0.0 single_particle_sort 3300015524 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-E19 DOE Joint Genome Institute (JGI) 3300015524 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 361132 439 0 0 0 0 SRX3549929 Unrestricted 0.0 single_particle_sort 3300033496 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.C13 DOE Joint Genome Institute (JGI) 3300033496 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 730308 803 1 0 1 0 SRX7630338 Unrestricted 0.0 single_particle_sort 3300018140 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_K14 DOE Joint Genome Institute (JGI) 3300018140 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 413803 445 0 0 0 0 SRX4647848 Unrestricted 0.0 single_particle_sort 3300041336 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.C22 DOE Joint Genome Institute (JGI) 3300041336 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 3142670 2805 0 0 0 0 SRX9646883 Unrestricted 0.0 single_particle_sort 3300050891 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_H11_SVS DOE Joint Genome Institute (JGI) 3300050891 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 117134 144 0 0 0 0 Restricted 0.0 single_particle_sort 3300035774 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.F19 DOE Joint Genome Institute (JGI) 3300035774 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 1274684 1351 1 0 1 0 SRX8858071 Unrestricted 0.0 single_particle_sort 3300034565 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.D5 DOE Joint Genome Institute (JGI) 3300034565 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 514080 550 0 0 0 0 SRX8393461 Unrestricted 0.0 single_particle_sort 3300036068 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_H8 DOE Joint Genome Institute (JGI) 3300036068 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 226486 292 1 0 1 0 SRX10045995 Unrestricted 0.0 single_particle_sort 3300050758 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_L2_SVS DOE Joint Genome Institute (JGI) 3300050758 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 67709 111 0 0 0 0 Restricted 0.0 single_particle_sort 3300015784 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-I07 DOE Joint Genome Institute (JGI) 3300015784 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 209793 244 0 0 0 0 SRX3562948 Unrestricted 0.0 single_particle_sort 3300041174 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.H20 DOE Joint Genome Institute (JGI) 3300041174 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 867077 939 1 0 1 0 SRX9660742 Unrestricted 0.0 single_particle_sort 3300034537 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P9_E18 DOE Joint Genome Institute (JGI) 3300034537 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 29802 35 0 0 0 0 SRX8136712 Unrestricted 0.0 single_particle_sort 3300033897 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.F14 DOE Joint Genome Institute (JGI) 3300033897 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 128987 159 0 0 0 0 SRX7626393 Unrestricted 0.0 single_particle_sort 3300018201 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-A22 DOE Joint Genome Institute (JGI) 3300018201 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 624246 559 0 0 0 0 SRX3978135 Unrestricted 0.0 single_particle_sort 3300041303 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.K10 DOE Joint Genome Institute (JGI) 3300041303 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 946209 924 1 0 1 0 SRX9660860 Unrestricted 0.0 single_particle_sort 3300033458 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.I5 DOE Joint Genome Institute (JGI) 3300033458 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 615785 679 0 0 0 0 SRX7630283 Unrestricted 0.0 single_particle_sort 3300010837 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_31_SCGC_AG-138-K22 DOE Joint Genome Institute (JGI) 3300010837 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 715158 805 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300019994 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-D19 DOE Joint Genome Institute (JGI) 3300019994 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 1037559 1144 0 0 1 0 SRX4653811 Unrestricted 0.0 single_particle_sort 3300033383 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.L11 DOE Joint Genome Institute (JGI) 3300033383 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 369984 439 0 0 0 0 SRX7630591 Unrestricted 0.0 single_particle_sort 3300050796 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_I7_SVS DOE Joint Genome Institute (JGI) 3300050796 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 41728 56 0 0 0 0 Restricted 0.0 single_particle_sort 3300050947 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-956-J15 DOE Joint Genome Institute (JGI) 3300050947 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1197303 -42.124435 248706 306 0 0 0 0 Restricted 0.0 single_particle_sort 3300021730 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.N19 DOE Joint Genome Institute (JGI) 3300021730 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 493188 531 0 0 0 0 SRX4009719 Unrestricted 0.0 single_particle_sort 3300032539 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.K6 DOE Joint Genome Institute (JGI) 3300032539 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 419733 469 0 0 0 0 SRX6426312 Unrestricted 0.0 single_particle_sort 3300033756 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_D4 DOE Joint Genome Institute (JGI) 3300033756 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 8931 11 0 0 0 0 SRX7525353 Unrestricted 0.0 single_particle_sort 3300050783 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_E17_SVS DOE Joint Genome Institute (JGI) 3300050783 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 224621 314 0 0 0 0 Restricted 0.0 single_particle_sort 3300071245 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_B03_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071245 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 2717954 2898 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300021102 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted archaeal cell/s from hot spring water in Nymph Lake, Yellowstone National Park, Wyoming, USA - Nanoarchaeota archaeon AD-903-M20 Oregon State University 3300021102 Metagenome - Single Particle Sort Spades v2.2.1 Manuscript to be submitted soon No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring water 44.75187 -110.7288 170645 235 0 0 0 0 0.0 single_particle_sort 3300050857 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_P13_SVS DOE Joint Genome Institute (JGI) 3300050857 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 82442 110 0 0 0 0 Restricted 0.0 single_particle_sort 3300032642 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.E20 DOE Joint Genome Institute (JGI) 3300032642 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 211942 269 0 0 0 0 SRX6431207 Unrestricted 0.0 single_particle_sort 3300021999 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal pool water in Devils Hole, Amargosa Valley, Nevada - Thaumarchaeota_MG1_bacterium_AG-122-K06 DOE Joint Genome Institute (JGI) 3300021999 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified geothermal water 36.4252 -116.2914 403418 529 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300023166 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.H22 DOE Joint Genome Institute (JGI) 3300023166 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 3065250 2980 1 0 1 0 SRX4508534 Unrestricted 0.0 single_particle_sort 3300016244 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-D20 DOE Joint Genome Institute (JGI) 3300016244 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 456661 578 0 0 1 0 SRX3562889 Unrestricted 0.0 single_particle_sort 3300023890 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.K17 DOE Joint Genome Institute (JGI) 3300023890 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 750600 837 0 0 0 0 SRX4523921 Unrestricted 0.0 single_particle_sort 3300015769 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-E11 DOE Joint Genome Institute (JGI) 3300015769 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 175144 223 0 0 0 0 SRX3560812 Unrestricted 0.0 single_particle_sort 3300010738 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.04.N13 DOE Joint Genome Institute (JGI) 3300010738 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 106412 133 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300022249 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Acetothermia_bacterium_SCGC_AH-147-F22 Bigelow Laboratory for Ocean Sciences 3300022249 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 1065129 1108 1 0 1 0 0.0 single_particle_sort 3300033941 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.J12 DOE Joint Genome Institute (JGI) 3300033941 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 222684 259 1 0 1 0 SRX7626279 Unrestricted 0.0 single_particle_sort 3300041637 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.N19 DOE Joint Genome Institute (JGI) 3300041637 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1153583 1038 0 0 0 0 SRX14835783 Unrestricted 0.0 single_particle_sort 3300038190 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.L22 DOE Joint Genome Institute (JGI) 3300038190 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 286961 378 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033712 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P1_J5 DOE Joint Genome Institute (JGI) 3300033712 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 7039 7 0 0 0 0 SRX7525387 Unrestricted 0.0 single_particle_sort 3300019565 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-M11 DOE Joint Genome Institute (JGI) 3300019565 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 37077 50 0 0 0 0 SRX3560351 Unrestricted 0.0 single_particle_sort 3300033651 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P2_I20 DOE Joint Genome Institute (JGI) 3300033651 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 11773 13 0 0 0 0 SRX7529898 Unrestricted 0.0 single_particle_sort 3300022078 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from freshwater lake hypolimnion in Alinen Mustajarvi, Pori, Finland - Parcubacteria bacterium JGI MDM2 000213CP-K7 DOE Joint Genome Institute (JGI) 3300022078 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Unclassified freshwater 61.5637 22.044 354024 402 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023511 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.I20 DOE Joint Genome Institute (JGI) 3300023511 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 434279 471 0 0 1 0 SRX4500778 Unrestricted 0.0 single_particle_sort 3300033358 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.D9 DOE Joint Genome Institute (JGI) 3300033358 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 463037 561 1 0 1 0 SRX7627275 Unrestricted 0.0 single_particle_sort 3300024785 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-G10 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024785 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 176496 228 0 0 0 0 0.0 single_particle_sort 3300021725 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.K7 DOE Joint Genome Institute (JGI) 3300021725 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 546733 601 0 0 0 0 SRX4009600 Unrestricted 0.0 single_particle_sort 3300019537 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-I14 DOE Joint Genome Institute (JGI) 3300019537 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 21018 32 0 0 0 0 SRX3560323 Unrestricted 0.0 single_particle_sort 3300033851 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.L5 DOE Joint Genome Institute (JGI) 3300033851 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 380113 440 1 0 1 0 SRX7626149 Unrestricted 0.0 single_particle_sort 3300038090 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .E6 DOE Joint Genome Institute (JGI) 3300038090 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 517867 635 0 0 0 0 SRX9411545 Unrestricted 0.0 single_particle_sort 3300015536 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-L07 DOE Joint Genome Institute (JGI) 3300015536 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 400318 523 0 0 0 0 SRX3549916 Unrestricted 0.0 single_particle_sort 3300032661 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.F12 DOE Joint Genome Institute (JGI) 3300032661 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 272999 319 0 0 0 0 SRX6431299 Unrestricted 0.0 single_particle_sort 3300033343 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.D8 DOE Joint Genome Institute (JGI) 3300033343 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 466365 526 1 0 1 0 SRX7627211 Unrestricted 0.0 single_particle_sort 3300031906 *Microbiome Permanent Draft Subsurface sediment and ocean crust microbial communities from Atlantis Massif Sorted cell/s from foraminiferal carbonate sand at Atlantis Massif, mid-Atlantic ridge, Atlantic Ocean - 69A 4R1 25-35 cm Marine Biological Laboratory 3300031906 Metagenome - Single Particle Sort SPAdes v. 3.9.0 released by JGI data releasing policy No Yes jackiegoordial@gmail.com Jackie Goordial No Environmental Aquatic Oceanic Marine Sediment sediment 30.12983 -42.122 36038658 50441 21 0 24 0 0.0 single_particle_sort 3300041324 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.C14 DOE Joint Genome Institute (JGI) 3300041324 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 274192 281 0 0 0 0 SRX9646872 Unrestricted 0.0 single_particle_sort 3300015239 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - unknown bacterium SCGC_AG-290-M05 DOE Joint Genome Institute (JGI) 3300015239 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 1923364 1763 1 0 1 0 SRX3578746 Unrestricted 0.0 single_particle_sort 3300033376 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.F7 DOE Joint Genome Institute (JGI) 3300033376 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 601362 646 0 0 0 0 SRX7627210 Unrestricted 0.0 single_particle_sort 3300018305 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_J18 DOE Joint Genome Institute (JGI) 3300018305 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1140344 1225 0 0 0 0 SRX4652600 Unrestricted 0.0 single_particle_sort 3300022056 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - unclassified bacterium JGI MDM2 NGM80-2-K22 DOE Joint Genome Institute (JGI) 3300022056 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 2371317 2095 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300018452 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_B19 DOE Joint Genome Institute (JGI) 3300018452 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1068817 1047 0 0 0 0 SRX4650615 Unrestricted 0.0 single_particle_sort 3300015503 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-J05 DOE Joint Genome Institute (JGI) 3300015503 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 263401 331 0 0 0 0 SRX3549816 Unrestricted 0.0 single_particle_sort 3300015008 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.G10 DOE Joint Genome Institute (JGI) 3300015008 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 284788 357 0 0 1 0 Restricted 0.0 single_particle_sort 3300022264 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - unknown_bacterium_SCGC_AH-151-G09 Bigelow Laboratory for Ocean Sciences 3300022264 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 347560 381 0 0 2 0 0.0 single_particle_sort 3300033778 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P4_D10 DOE Joint Genome Institute (JGI) 3300033778 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 19510 27 0 0 0 0 SRX7525380 Unrestricted 0.0 single_particle_sort 3300016566 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - SAR46_bacterium_SCGC_AG-640-F03 DOE Joint Genome Institute (JGI) 3300016566 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 1769572 1622 0 0 0 0 SRX3784279 Unrestricted 0.0 single_particle_sort 3300016011 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown bacterium SCGC_AG-657-I02 DOE Joint Genome Institute (JGI) 3300016011 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 519923 479 0 0 0 0 SRX3779627 Unrestricted 0.0 single_particle_sort 3300015744 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-B09 DOE Joint Genome Institute (JGI) 3300015744 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 127037 150 0 0 0 0 SRX3550865 Unrestricted 0.0 single_particle_sort 3300022112 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.D9 DOE Joint Genome Institute (JGI) 3300022112 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1548788 1611 0 0 1 0 SRX3998263 Unrestricted 0.0 single_particle_sort 3300023870 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.K13 DOE Joint Genome Institute (JGI) 3300023870 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 716186 753 0 0 0 0 SRX4549806 Unrestricted 0.0 single_particle_sort 3300016269 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Peregrinibacteria bacterium SCGC_AG-278-N17 DOE Joint Genome Institute (JGI) 3300016269 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 586296 660 1 0 1 0 SRX3578497 Unrestricted 0.0 single_particle_sort 3300016111 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-N17 DOE Joint Genome Institute (JGI) 3300016111 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 477139 596 0 0 0 0 SRX3564085 Unrestricted 0.0 single_particle_sort 3300038070 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.F17 DOE Joint Genome Institute (JGI) 3300038070 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 78339 93 0 0 0 0 SRX9411463 Unrestricted 0.0 single_particle_sort 3300038231 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.D17 DOE Joint Genome Institute (JGI) 3300038231 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 381218 418 1 0 2 0 SRX9411079 Unrestricted 0.0 single_particle_sort 3300015108 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-D09 DOE Joint Genome Institute (JGI) 3300015108 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 332174 393 1 0 0 0 SRX3578314 Unrestricted 0.0 single_particle_sort 3300033962 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.G15 DOE Joint Genome Institute (JGI) 3300033962 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 258497 299 0 0 0 0 SRX7630367 Unrestricted 0.0 single_particle_sort 3300015919 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-I18 DOE Joint Genome Institute (JGI) 3300015919 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 310074 372 0 0 0 0 SRX3540658 Unrestricted 0.0 single_particle_sort 3300022098 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.C8 DOE Joint Genome Institute (JGI) 3300022098 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1141281 1112 0 0 0 0 SRX3998132 Unrestricted 0.0 single_particle_sort 3300022012 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - unclassified bacterium JGI MDM2 NGM80-1-G08 DOE Joint Genome Institute (JGI) 3300022012 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 545419 658 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300035794 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.K5 DOE Joint Genome Institute (JGI) 3300035794 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 939520 1026 2 0 1 0 SRX8859980 Unrestricted 0.0 single_particle_sort 3300050871 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_C16_SVS DOE Joint Genome Institute (JGI) 3300050871 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 24474 20 0 0 0 0 Restricted 0.0 single_particle_sort 3300041094 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.K13 DOE Joint Genome Institute (JGI) 3300041094 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 280822 308 0 0 1 0 SRX9654482 Unrestricted 0.0 single_particle_sort 3300024745 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-K23 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024745 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 139295 164 0 0 0 0 0.0 single_particle_sort 3300037929 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.E22 DOE Joint Genome Institute (JGI) 3300037929 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 33609 38 0 0 0 0 SRX9410606 Unrestricted 0.0 single_particle_sort 3300041194 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.H11 DOE Joint Genome Institute (JGI) 3300041194 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 431859 428 0 0 0 0 SRX9654995 Unrestricted 0.0 single_particle_sort 3300016284 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-K06 DOE Joint Genome Institute (JGI) 3300016284 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 598970 727 0 0 0 0 SRX3563845 Unrestricted 0.0 single_particle_sort 3300023409 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.L11 DOE Joint Genome Institute (JGI) 3300023409 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 685008 785 1 0 1 0 SRX4519746 Unrestricted 0.0 single_particle_sort 3300018316 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-N10 DOE Joint Genome Institute (JGI) 3300018316 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1302781 1284 0 0 0 0 SRX3974865 Unrestricted 0.0 single_particle_sort 3300023922 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.J18 DOE Joint Genome Institute (JGI) 3300023922 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 1017056 1087 1 0 1 0 SRX4523916 Unrestricted 0.0 single_particle_sort 3300022289 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Acetothermia_bacterium_SCGC_AH-151-G19 Bigelow Laboratory for Ocean Sciences 3300022289 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 1186488 1264 1 0 1 0 0.0 single_particle_sort 3300041268 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.2.K10 DOE Joint Genome Institute (JGI) 3300041268 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 365721 451 0 0 0 0 SRX9667824 Unrestricted 0.0 single_particle_sort 3300019974 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-C15 DOE Joint Genome Institute (JGI) 3300019974 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 433285 509 0 0 1 0 SRX4653692 Unrestricted 0.0 single_particle_sort 3300071285 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_Wchmk_E09_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071285 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 992261 1069 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300032682 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.E13 DOE Joint Genome Institute (JGI) 3300032682 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 979580 1080 0 0 1 0 SRX6452418 Unrestricted 0.0 single_particle_sort 3300022621 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Rhizobiales bacterium JGI PCGPRD042217_16 DOE Joint Genome Institute (JGI) 3300022621 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 719927 791 0 0 0 0 SRX4414723 Unrestricted 0.0 single_particle_sort 3300033877 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.C21 DOE Joint Genome Institute (JGI) 3300033877 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 259642 341 0 0 0 0 SRX7626814 Unrestricted 0.0 single_particle_sort 3300016622 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Aminicenantes_bacterium_SCGC_AG-636-C17 DOE Joint Genome Institute (JGI) 3300016622 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 2913923 2779 1 0 1 0 SRX3784590 Unrestricted 0.0 single_particle_sort 3300050987 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_P14_SVS DOE Joint Genome Institute (JGI) 3300050987 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 67662 93 0 0 0 0 Restricted 0.0 single_particle_sort 3300050776 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_A20_SVS DOE Joint Genome Institute (JGI) 3300050776 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 37151 44 0 0 0 0 Restricted 0.0 single_particle_sort 3300033677 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P3_L19 DOE Joint Genome Institute (JGI) 3300033677 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 8165 15 0 0 0 0 SRX7531239 Unrestricted 0.0 single_particle_sort 3300013887 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.H11 DOE Joint Genome Institute (JGI) 3300013887 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 226011 303 1 0 0 0 SRX3366947 Unrestricted 0.0 single_particle_sort 3300018352 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Syntrophaceae_bacterium_SCGC_AG-650-J10 DOE Joint Genome Institute (JGI) 3300018352 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1590339 1564 1 0 1 0 SRX3981812 Unrestricted 0.0 single_particle_sort 3300032537 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.G5 DOE Joint Genome Institute (JGI) 3300032537 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 450890 525 0 0 1 0 SRX6429423 Unrestricted 0.0 single_particle_sort 3300018103 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - uncultured microorganism JGI MDM2 ZSSED05-1-H20 DOE Joint Genome Institute (JGI) 3300018103 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 238765 279 0 0 0 0 SRX3916442 Unrestricted 0.0 single_particle_sort 3300019916 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-N11 DOE Joint Genome Institute (JGI) 3300019916 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 498248 569 1 0 1 0 SRX4663480 Unrestricted 0.0 single_particle_sort 3300050949 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-956-L09 DOE Joint Genome Institute (JGI) 3300050949 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1197303 -42.124435 745154 817 0 0 0 0 Restricted 0.0 single_particle_sort 3300015382 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Parcubacteria bacterium SCGC_AG-128-C05 DOE Joint Genome Institute (JGI) 3300015382 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 403961 482 1 0 0 0 SRX3574226 Unrestricted 0.0 single_particle_sort 3300015720 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-H17 DOE Joint Genome Institute (JGI) 3300015720 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 138347 173 0 0 0 0 SRX3560949 Unrestricted 0.0 single_particle_sort 3300032565 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.E16 DOE Joint Genome Institute (JGI) 3300032565 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 436111 479 0 0 0 0 SRX6452332 Unrestricted 0.0 single_particle_sort 3300050859 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_P16_SVS DOE Joint Genome Institute (JGI) 3300050859 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 36450 54 0 0 0 0 Restricted 0.0 single_particle_sort 3300015580 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown bacterium SCGC_AG-122-O23 DOE Joint Genome Institute (JGI) 3300015580 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 827982 905 0 0 1 0 SRX3574138 Unrestricted 0.0 single_particle_sort 3300016431 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Cyanobacteria_bacterium_SCGC_AG-490-B05 DOE Joint Genome Institute (JGI) 3300016431 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.49 1054433 1170 1 0 1 0 SRX3781586 Unrestricted 0.0 single_particle_sort 3300021997 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - Acetothermia bacterium JGI MDM2 NGM80-1-G18 DOE Joint Genome Institute (JGI) 3300021997 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 387205 461 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300018136 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Spirochaetes_bacterium_SCGC_AG-650-D19 DOE Joint Genome Institute (JGI) 3300018136 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 493803 559 0 0 1 0 SRX3976990 Unrestricted 0.0 single_particle_sort 3300015767 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-L05 DOE Joint Genome Institute (JGI) 3300015767 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 162767 217 1 0 0 0 SRX3560738 Unrestricted 0.0 single_particle_sort 3300019642 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-F23 DOE Joint Genome Institute (JGI) 3300019642 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 135730 124 0 0 0 0 SRX3959970 Unrestricted 0.0 single_particle_sort 3300041340 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.H18 DOE Joint Genome Institute (JGI) 3300041340 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1955351 1783 0 0 0 0 SRX9646934 Unrestricted 0.0 single_particle_sort 3300019952 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-C21 DOE Joint Genome Institute (JGI) 3300019952 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 135680 191 0 0 0 0 SRX4653730 Unrestricted 0.0 single_particle_sort 3300041639 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.G10 DOE Joint Genome Institute (JGI) 3300041639 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1407407 1449 1 0 1 0 SRX14839356 Unrestricted 0.0 single_particle_sort 3300022247 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Acetothermia_bacterium_SCGC_AH-147-F11 Bigelow Laboratory for Ocean Sciences 3300022247 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 888699 995 1 0 0 0 0.0 single_particle_sort 3300035966 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.M16 DOE Joint Genome Institute (JGI) 3300035966 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 483770 541 0 0 0 0 SRX8862698 Unrestricted 0.0 single_particle_sort 3300015461 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-H06 DOE Joint Genome Institute (JGI) 3300015461 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 152224 175 0 0 0 0 SRX3560321 Unrestricted 0.0 single_particle_sort 3300015735 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-I13 DOE Joint Genome Institute (JGI) 3300015735 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 66418 82 0 0 0 0 SRX3562469 Unrestricted 0.0 single_particle_sort 3300018374 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_D21 DOE Joint Genome Institute (JGI) 3300018374 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 1758313 1806 0 0 1 0 SRX4646596 Unrestricted 0.0 single_particle_sort 3300019539 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-L19 DOE Joint Genome Institute (JGI) 3300019539 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 21121 28 0 0 0 0 SRX3562634 Unrestricted 0.0 single_particle_sort 3300021641 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.K11 DOE Joint Genome Institute (JGI) 3300021641 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 67135 93 0 0 0 0 SRX4005539 Unrestricted 0.0 single_particle_sort 3300035472 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_F15 DOE Joint Genome Institute (JGI) 3300035472 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 87206 109 0 0 1 0 SRX9540127 Unrestricted 0.0 single_particle_sort 3300016331 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_J19 DOE Joint Genome Institute (JGI) 3300016331 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 776844 795 1 0 0 0 SRX4067805 Unrestricted 0.0 single_particle_sort 3300019905 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-L6 DOE Joint Genome Institute (JGI) 3300019905 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 358376 418 1 0 0 0 SRX4663358 Unrestricted 0.0 single_particle_sort 3300071226 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_WGAX_G11_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071226 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 310023 372 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015150 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - Elusimicrobia bacterium SCGC_AG-290-L08 DOE Joint Genome Institute (JGI) 3300015150 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 861262 863 1 0 1 0 SRX3578743 Unrestricted 0.0 single_particle_sort 3300024734 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-N11 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024734 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 126658 154 0 0 0 0 0.0 single_particle_sort 3300034539 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.J19 DOE Joint Genome Institute (JGI) 3300034539 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 911516 925 1 0 1 0 SRX8391069 Unrestricted 0.0 single_particle_sort 3300015482 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-M18 DOE Joint Genome Institute (JGI) 3300015482 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 224623 256 0 0 0 0 SRX3560354 Unrestricted 0.0 single_particle_sort 3300015713 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Gemmatimonadetes bacterium SCGC_AG-657-J04 DOE Joint Genome Institute (JGI) 3300015713 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 134873 165 1 0 1 0 SRX3601354 Unrestricted 0.0 single_particle_sort 3300021746 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.M20 DOE Joint Genome Institute (JGI) 3300021746 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 541323 636 0 0 0 0 SRX4009723 Unrestricted 0.0 single_particle_sort 3300014411 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.G15 DOE Joint Genome Institute (JGI) 3300014411 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 632240 710 0 0 1 0 SRX3368448 Unrestricted 0.0 single_particle_sort 3300033899 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.K14 DOE Joint Genome Institute (JGI) 3300033899 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 610688 665 1 0 2 0 SRX7626392 Unrestricted 0.0 single_particle_sort 3300010839 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_16_SCGC_AG-138-I02 DOE Joint Genome Institute (JGI) 3300010839 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 698704 819 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300015868 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_F19 DOE Joint Genome Institute (JGI) 3300015868 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 196380 237 0 0 1 0 SRX4066382 Unrestricted 0.0 single_particle_sort 3300024078 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.E11 DOE Joint Genome Institute (JGI) 3300024078 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 603055 697 0 0 1 0 SRX4519609 Unrestricted 0.0 single_particle_sort 3300033314 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.I11 DOE Joint Genome Institute (JGI) 3300033314 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 437656 508 1 0 1 0 SRX7627681 Unrestricted 0.0 single_particle_sort 3300021773 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.G6 DOE Joint Genome Institute (JGI) 3300021773 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 817007 873 0 0 0 0 SRX4009926 Unrestricted 0.0 single_particle_sort 3300023938 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.L17 DOE Joint Genome Institute (JGI) 3300023938 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1045043 1194 0 0 0 0 SRX4519524 Unrestricted 0.0 single_particle_sort 3300026575 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-A17 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026575 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 21878 24 0 0 0 0 0.0 single_particle_sort 3300033699 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_J18 DOE Joint Genome Institute (JGI) 3300033699 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 13956 20 0 0 0 0 SRX7525438 Unrestricted 0.0 single_particle_sort 3300015668 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Jinze hot spring sediment, Tengchong, China - JNZ.1.2014 1216 MDM2 JNZ p1 16S.J6.double-peak DOE Joint Genome Institute (JGI) 3300015668 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 25.4413 98.46 1220767 1198 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300019664 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-578-G05 DOE Joint Genome Institute (JGI) 3300019664 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 199855 249 1 0 1 0 SRX4645822 Unrestricted 0.0 single_particle_sort 3300022117 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.E18 DOE Joint Genome Institute (JGI) 3300022117 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 2716703 2499 0 0 1 0 SRX3998124 Unrestricted 0.0 single_particle_sort 3300015449 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-K04 DOE Joint Genome Institute (JGI) 3300015449 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 121475 161 0 0 0 0 SRX3560343 Unrestricted 0.0 single_particle_sort 3300024624 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-K13 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024624 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 39427 57 0 0 0 0 0.0 single_particle_sort 3300021684 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.N9 DOE Joint Genome Institute (JGI) 3300021684 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 214530 286 0 0 0 0 SRX4009950 Unrestricted 0.0 single_particle_sort 3300018457 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Armatimonadetes_bacterium_SCGC_AG-650-K13 DOE Joint Genome Institute (JGI) 3300018457 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1275089 1291 1 0 0 0 SRX4815113 Unrestricted 0.0 single_particle_sort 3300016183 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG-582-N19 DOE Joint Genome Institute (JGI) 3300016183 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 624702 712 1 0 1 0 SRX3580240 Unrestricted 0.0 single_particle_sort 3300018391 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_G12 DOE Joint Genome Institute (JGI) 3300018391 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 1880743 2082 2 0 2 0 SRX4647101 Unrestricted 0.0 single_particle_sort 3300036073 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_L11 DOE Joint Genome Institute (JGI) 3300036073 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 36636 54 0 0 0 0 SRX10046103 Unrestricted 0.0 single_particle_sort 3300041293 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.G7 DOE Joint Genome Institute (JGI) 3300041293 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1462430 1386 0 0 0 0 SRX9655185 Unrestricted 0.0 single_particle_sort 3300033935 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.J10 DOE Joint Genome Institute (JGI) 3300033935 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 338611 406 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300022017 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - Acetothermia bacterium JGI MDM2 NGM80-1-J15 DOE Joint Genome Institute (JGI) 3300022017 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 578831 644 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300024824 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-D18 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024824 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 263014 321 0 0 0 0 0.0 single_particle_sort 3300016588 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - Chloroflexi_bacterium_SCGC_AG-640-O10 DOE Joint Genome Institute (JGI) 3300016588 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 1877313 1918 1 0 1 0 SRX3784275 Unrestricted 0.0 single_particle_sort 3300048748 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 159_B16_SVS DOE Joint Genome Institute (JGI) 3300048748 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 43629 92 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300016083 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-D21 DOE Joint Genome Institute (JGI) 3300016083 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 453139 564 0 0 0 0 SRX3560666 Unrestricted 0.0 single_particle_sort 3300033967 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.L16 DOE Joint Genome Institute (JGI) 3300033967 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 638887 762 0 0 0 0 SRX7630395 Unrestricted 0.0 single_particle_sort 3300035814 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_N16 DOE Joint Genome Institute (JGI) 3300035814 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 55114 75 0 0 0 0 SRX10045840 Unrestricted 0.0 single_particle_sort 3300010729 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_17_SCGC_AG-159-F02 DOE Joint Genome Institute (JGI) 3300010729 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 82913 107 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035759 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.H20 DOE Joint Genome Institute (JGI) 3300035759 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 857514 993 0 0 0 0 SRX8901094 Unrestricted 0.0 single_particle_sort 3300032386 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.M11 DOE Joint Genome Institute (JGI) 3300032386 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 199478 219 0 0 0 0 SRX6449962 Unrestricted 0.0 single_particle_sort 3300071231 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_PTA_F04_scBac_plate.C DOE Joint Genome Institute (JGI) 3300071231 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 6016744 6188 2 0 3 0 Unrestricted 0.0 single_particle_sort 3300016326 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-582-P10 DOE Joint Genome Institute (JGI) 3300016326 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 656774 785 1 0 1 0 SRX3580366 Unrestricted 0.0 single_particle_sort 3300050961 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_E6_SVS DOE Joint Genome Institute (JGI) 3300050961 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 104074 92 0 0 0 0 Restricted 0.0 single_particle_sort 3300041159 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.E10 DOE Joint Genome Institute (JGI) 3300041159 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1236406 1346 0 0 0 0 SRX9675509 Unrestricted 0.0 single_particle_sort 3300033920 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.M18 DOE Joint Genome Institute (JGI) 3300033920 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 286198 341 1 0 1 0 SRX7626818 Unrestricted 0.0 single_particle_sort 3300033215 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.C15 DOE Joint Genome Institute (JGI) 3300033215 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 248505 299 0 0 0 0 SRX7629296 Unrestricted 0.0 single_particle_sort 3300032687 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.H4 DOE Joint Genome Institute (JGI) 3300032687 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 325469 357 1 0 1 0 SRX6452385 Unrestricted 0.0 single_particle_sort 3300032393 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.M7 DOE Joint Genome Institute (JGI) 3300032393 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 327157 383 0 0 0 0 SRX6449955 Unrestricted 0.0 single_particle_sort 3300033872 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.K9 DOE Joint Genome Institute (JGI) 3300033872 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 313244 370 0 0 0 0 SRX7626294 Unrestricted 0.0 single_particle_sort 3300015830 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-274-J11 DOE Joint Genome Institute (JGI) 3300015830 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 272087 327 1 0 0 0 SRX3578261 Unrestricted 0.0 single_particle_sort 3300016158 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-N15 DOE Joint Genome Institute (JGI) 3300016158 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 548247 668 0 0 0 0 SRX3560742 Unrestricted 0.0 single_particle_sort 3300016058 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-B18 DOE Joint Genome Institute (JGI) 3300016058 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 429567 541 0 0 0 0 SRX3539849 Unrestricted 0.0 single_particle_sort 3300016553 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Sorted cell/s from deep shales in West Virginia, USA - MahaSR_06_E3 DOE Joint Genome Institute (JGI) 3300016553 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back deep subsurface 39.6017 -79.9761 1070885 1208 1 0 0 0 SRX3577094 Unrestricted 0.0 single_particle_sort 3300033672 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P4_M6 DOE Joint Genome Institute (JGI) 3300033672 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 4965 4 0 0 0 0 SRX7531025 Unrestricted 0.0 single_particle_sort 3300051150 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_D18_SVS DOE Joint Genome Institute (JGI) 3300051150 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 190618 302 0 0 0 0 Restricted 0.0 single_particle_sort 3300015630 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Jinze hot spring sediment, Tengchong, China - JNZ.1.2014 1216 MDM2 JNZ p1 16S.L17.double-seq DOE Joint Genome Institute (JGI) 3300015630 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 25.4413 98.46 261352 344 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300018357 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-N16 DOE Joint Genome Institute (JGI) 3300018357 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1638996 1638 0 0 0 0 SRX3974891 Unrestricted 0.0 single_particle_sort 3300016627 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from freshwater in Walker Pond, Maine, USA - unknown_bacterium_SCGC_AG-301-J23 DOE Joint Genome Institute (JGI) 3300016627 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.86 -69.58 7.45 3105942 2901 1 0 1 0 SRX3782060 Unrestricted 0.0 single_particle_sort 3300050982 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_O2_SVS DOE Joint Genome Institute (JGI) 3300050982 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 44619 32 0 0 0 0 Restricted 0.0 single_particle_sort 3300023960 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.J17 DOE Joint Genome Institute (JGI) 3300023960 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1394984 1460 1 0 1 0 SRX4519523 Unrestricted 0.0 single_particle_sort 3300018121 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - uncultured microorganism JGI MDM2 ZSSED05-1-E22 DOE Joint Genome Institute (JGI) 3300018121 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 279820 358 0 0 0 0 SRX3916443 Unrestricted 0.0 single_particle_sort 3300016196 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-D11 DOE Joint Genome Institute (JGI) 3300016196 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 145761 205 0 0 0 0 SRX3562818 Unrestricted 0.0 single_particle_sort 3300033913 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.N17 DOE Joint Genome Institute (JGI) 3300033913 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 67419 77 0 0 0 0 SRX7626538 Unrestricted 0.0 single_particle_sort 3300041286 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.1.G6 DOE Joint Genome Institute (JGI) 3300041286 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1785764 1727 0 0 1 0 SRX9654847 Unrestricted 0.0 single_particle_sort 3300023576 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.G16 DOE Joint Genome Institute (JGI) 3300023576 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 103380 126 0 0 0 0 SRX4415634 Unrestricted 0.0 single_particle_sort 3300016426 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-L08 DOE Joint Genome Institute (JGI) 3300016426 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 1122540 1123 0 0 0 0 SRX3560741 Unrestricted 0.0 single_particle_sort 3300041589 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.N19 DOE Joint Genome Institute (JGI) 3300041589 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 970414 914 0 0 0 0 SRX14829609 Unrestricted 0.0 single_particle_sort 3300023148 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.G16 DOE Joint Genome Institute (JGI) 3300023148 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1196583 1311 2 0 2 0 SRX4513149 Unrestricted 0.0 single_particle_sort 3300014400 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.H19 DOE Joint Genome Institute (JGI) 3300014400 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 466284 491 1 0 0 0 SRX3368464 Unrestricted 0.0 single_particle_sort 3300015625 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from a deep sea mud volcano in Anaximander Mountains, Eastern Mediterranean Sea - B25.2.2014 1114 MDM2 B25 p2 16S.C4.double-seq DOE Joint Genome Institute (JGI) 3300015625 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Mud volcano Marine Unclassified Deep sea volcano 35.3338 30.2722 246737 264 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300021669 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.K5 DOE Joint Genome Institute (JGI) 3300021669 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 199947 241 0 0 0 0 SRX4004719 Unrestricted 0.0 single_particle_sort 3300032486 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.H15 DOE Joint Genome Institute (JGI) 3300032486 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 768688 834 1 0 0 0 SRX6426624 Unrestricted 0.0 single_particle_sort 3300023927 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.M9 DOE Joint Genome Institute (JGI) 3300023927 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1217543 1139 1 0 1 0 SRX4521634 Unrestricted 0.0 single_particle_sort 3300033206 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.E20 DOE Joint Genome Institute (JGI) 3300033206 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 186361 218 1 0 1 0 SRX7630254 Unrestricted 0.0 single_particle_sort 3300018275 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_J9 DOE Joint Genome Institute (JGI) 3300018275 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 935046 973 0 0 0 0 SRX4650612 Unrestricted 0.0 single_particle_sort 3300016096 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown archaeum SCGC_AG-657-G22 DOE Joint Genome Institute (JGI) 3300016096 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 449137 574 0 0 0 0 SRX3623497 Unrestricted 0.0 single_particle_sort 3300019689 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown archaeum SCGC_AG-574-P14 DOE Joint Genome Institute (JGI) 3300019689 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 524799 715 1 0 1 0 SRX3903184 Unrestricted 0.0 single_particle_sort 3300015825 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-F12 DOE Joint Genome Institute (JGI) 3300015825 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 245013 318 1 0 0 0 SRX3551011 Unrestricted 0.0 single_particle_sort 3300033854 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.G6 DOE Joint Genome Institute (JGI) 3300033854 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 106849 153 0 0 0 0 SRX7626202 Unrestricted 0.0 single_particle_sort 3300033719 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P2_E4 DOE Joint Genome Institute (JGI) 3300033719 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 29818 51 0 0 0 0 SRX7525401 Unrestricted 0.0 single_particle_sort 3300014383 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.J11 DOE Joint Genome Institute (JGI) 3300014383 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 161190 210 0 0 0 0 SRX3368333 Unrestricted 0.0 single_particle_sort 3300023514 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.N6 DOE Joint Genome Institute (JGI) 3300023514 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 84340 107 0 0 0 0 SRX4548506 Unrestricted 0.0 single_particle_sort 3300035988 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.K9 DOE Joint Genome Institute (JGI) 3300035988 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 1385985 1445 0 0 1 0 SRX8855391 Unrestricted 0.0 single_particle_sort 3300015762 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-E18 DOE Joint Genome Institute (JGI) 3300015762 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 179517 213 0 0 0 0 SRX3560679 Unrestricted 0.0 single_particle_sort 3300019647 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-G22 DOE Joint Genome Institute (JGI) 3300019647 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 119358 128 0 0 0 0 SRX3959916 Unrestricted 0.0 single_particle_sort 3300019957 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-D21 DOE Joint Genome Institute (JGI) 3300019957 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 340385 355 0 0 0 0 SRX4653823 Unrestricted 0.0 single_particle_sort 3300033654 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_E15 DOE Joint Genome Institute (JGI) 3300033654 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 18264 21 0 0 0 0 SRX7529894 Unrestricted 0.0 single_particle_sort 3300014458 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.B12 DOE Joint Genome Institute (JGI) 3300014458 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1229224 1484 1 0 1 0 SRX3298784 Unrestricted 0.0 single_particle_sort 3300033944 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.D13 DOE Joint Genome Institute (JGI) 3300033944 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 272812 334 0 0 0 0 SRX7626287 Unrestricted 0.0 single_particle_sort 3300022636 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Sphingobacteriales bacterium JGI PCGPRD042217_6 DOE Joint Genome Institute (JGI) 3300022636 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 1321104 1376 1 0 0 0 SRX4414629 Unrestricted 0.0 single_particle_sort 3300015978 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-E12 DOE Joint Genome Institute (JGI) 3300015978 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 380682 445 0 0 1 0 SRX3539855 Unrestricted 0.0 single_particle_sort 3300016385 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - SAR46_bacterium_SCGC_AG-640-N21 DOE Joint Genome Institute (JGI) 3300016385 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 1045620 917 1 0 1 0 SRX3784332 Unrestricted 0.0 single_particle_sort 3300016241 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-C04 DOE Joint Genome Institute (JGI) 3300016241 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 473666 552 1 0 1 0 SRX3562823 Unrestricted 0.0 single_particle_sort 3300035255 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_D20 DOE Joint Genome Institute (JGI) 3300035255 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 101006 141 1 0 0 0 SRX9537710 Unrestricted 0.0 single_particle_sort 3300015693 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-N05 DOE Joint Genome Institute (JGI) 3300015693 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 65705 80 0 0 1 0 SRX3560796 Unrestricted 0.0 single_particle_sort 3300032532 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.I21 DOE Joint Genome Institute (JGI) 3300032532 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 498927 561 1 0 1 0 SRX6429298 Unrestricted 0.0 single_particle_sort 3300016000 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - BRC1 bacterium SCGC_AG-657-P02 DOE Joint Genome Institute (JGI) 3300016000 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 525168 471 1 0 1 0 SRX3601853 Unrestricted 0.0 single_particle_sort 3300024640 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-C18 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024640 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 66105 76 0 0 0 0 0.0 single_particle_sort 3300051108 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_K17_SVS DOE Joint Genome Institute (JGI) 3300051108 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 68609 90 0 0 0 0 Restricted 0.0 single_particle_sort 3300015387 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - unknown archaeum SCGC_AG-128-G08 DOE Joint Genome Institute (JGI) 3300015387 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 436078 567 0 0 0 0 SRX3576744 Unrestricted 0.0 single_particle_sort 3300021992 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - Acetothermia bacterium JGI MDM2 NGM80-1-I18 DOE Joint Genome Institute (JGI) 3300021992 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 382435 443 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300034748 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.1.I9 DOE Joint Genome Institute (JGI) 3300034748 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 1532680 1686 1 0 1 0 SRX8390299 Unrestricted 0.0 single_particle_sort 3300022603 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Bacillales bacterium JGI PCGPRD042217_27 DOE Joint Genome Institute (JGI) 3300022603 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 83675 99 1 0 1 0 SRX4415244 Unrestricted 0.0 single_particle_sort 3300015893 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-E18 DOE Joint Genome Institute (JGI) 3300015893 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 279593 309 0 0 0 0 SRX3546989 Unrestricted 0.0 single_particle_sort 3300019446 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent microbial mat, Guaymas Basin, Mexico - 6E_4862_10_21 DOE Joint Genome Institute (JGI) 3300019446 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.001 -110.5998 8143910 9085 3 0 5 0 SRX3974055 Unrestricted 0.0 single_particle_sort 3300024840 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-F23 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024840 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 75172 91 0 0 0 0 0.0 single_particle_sort 3300051008 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_C9_SVS DOE Joint Genome Institute (JGI) 3300051008 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 88858 111 0 0 0 0 Restricted 0.0 single_particle_sort 3300016100 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-274-J17 DOE Joint Genome Institute (JGI) 3300016100 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 497760 577 0 0 1 0 SRX3578263 Unrestricted 0.0 single_particle_sort 3300035876 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.M17 DOE Joint Genome Institute (JGI) 3300035876 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 1212152 1326 1 0 1 0 SRX8857277 Unrestricted 0.0 single_particle_sort 3300016485 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Aminicenantes_bacterium_SCGC_AG-636-I22 DOE Joint Genome Institute (JGI) 3300016485 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Sediment Freshwater Unclassified Freshwater sediment 53.7598 107.9791 7.32 1719720 1586 1 0 1 0 SRX3784478 Unrestricted 0.0 single_particle_sort 3300035953 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.N14 DOE Joint Genome Institute (JGI) 3300035953 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1794874 1871 1 0 1 0 SRX8862682 Unrestricted 0.0 single_particle_sort 3300034473 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.L4 DOE Joint Genome Institute (JGI) 3300034473 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 388517 407 0 0 0 0 SRX8390194 Unrestricted 0.0 single_particle_sort 3300038226 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.G21 DOE Joint Genome Institute (JGI) 3300038226 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 628548 685 0 0 0 0 SRX9411060 Unrestricted 0.0 single_particle_sort 3300041225 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.L10 DOE Joint Genome Institute (JGI) 3300041225 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 970829 1146 1 0 1 0 SRX9653324 Unrestricted 0.0 single_particle_sort 3300035843 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0815.Sybr.01.N13 DOE Joint Genome Institute (JGI) 3300035843 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 790035 888 1 0 0 0 SRX8894646 Unrestricted 0.0 single_particle_sort 3300015886 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-O10 DOE Joint Genome Institute (JGI) 3300015886 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 245497 292 0 0 0 0 SRX3580343 Unrestricted 0.0 single_particle_sort 3300019991 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-F6 DOE Joint Genome Institute (JGI) 3300019991 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 1149071 1107 1 0 1 0 SRX4654464 Unrestricted 0.0 single_particle_sort 3300014483 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.F15 DOE Joint Genome Institute (JGI) 3300014483 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 2271911 2077 0 0 0 0 SRX3368366 Unrestricted 0.0 single_particle_sort 3300023775 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.E17 DOE Joint Genome Institute (JGI) 3300023775 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 216877 275 0 0 0 0 SRX4548024 Unrestricted 0.0 single_particle_sort 3300018204 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_C17 DOE Joint Genome Institute (JGI) 3300018204 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 469152 507 0 0 0 0 SRX4652591 Unrestricted 0.0 single_particle_sort 3300041171 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.1.C14 DOE Joint Genome Institute (JGI) 3300041171 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 51286 59 0 0 0 0 SRX9654877 Unrestricted 0.0 single_particle_sort 3300015781 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-G14 DOE Joint Genome Institute (JGI) 3300015781 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 228045 237 0 0 0 0 SRX3560691 Unrestricted 0.0 single_particle_sort 3300035477 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_D16 DOE Joint Genome Institute (JGI) 3300035477 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 188640 227 0 0 0 0 SRX9540269 Unrestricted 0.0 single_particle_sort 3300049973 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_N2_SVS DOE Joint Genome Institute (JGI) 3300049973 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 30521 49 0 0 0 0 Restricted 0.0 single_particle_sort 3300014396 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.H22 DOE Joint Genome Institute (JGI) 3300014396 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 373196 457 0 0 0 0 SRX3368418 Unrestricted 0.0 single_particle_sort 3300049946 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_G4_SVS DOE Joint Genome Institute (JGI) 3300049946 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 71566 74 0 0 0 0 Restricted 0.0 single_particle_sort 3300035771 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.E9 DOE Joint Genome Institute (JGI) 3300035771 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 615725 663 1 0 1 0 SRX8858029 Unrestricted 0.0 single_particle_sort 3300015487 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-E11 DOE Joint Genome Institute (JGI) 3300015487 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 227709 282 0 0 1 0 SRX3556442 Unrestricted 0.0 single_particle_sort 3300041230 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.F10 DOE Joint Genome Institute (JGI) 3300041230 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 759920 818 0 0 0 0 SRX9523936 Unrestricted 0.0 single_particle_sort 3300050894 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_H6_SVS DOE Joint Genome Institute (JGI) 3300050894 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 51247 57 0 0 0 0 Restricted 0.0 single_particle_sort 3300015521 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-F17 DOE Joint Genome Institute (JGI) 3300015521 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 359830 423 0 0 0 0 SRX3549457 Unrestricted 0.0 single_particle_sort 3300033789 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P2_D3 DOE Joint Genome Institute (JGI) 3300033789 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 8784 9 0 0 0 0 SRX7525262 Unrestricted 0.0 single_particle_sort 3300036094 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_I18 DOE Joint Genome Institute (JGI) 3300036094 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 66738 81 0 0 0 0 SRX10046521 Unrestricted 0.0 single_particle_sort 3300041274 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.K10 DOE Joint Genome Institute (JGI) 3300041274 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1508659 1358 0 0 0 0 SRX9677094 Unrestricted 0.0 single_particle_sort 3300015463 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-E16 DOE Joint Genome Institute (JGI) 3300015463 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 150690 188 0 0 0 0 SRX3560053 Unrestricted 0.0 single_particle_sort 3300035918 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_N11 DOE Joint Genome Institute (JGI) 3300035918 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 122620 138 0 0 1 0 SRX10045567 Unrestricted 0.0 single_particle_sort 3300023584 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.G20 DOE Joint Genome Institute (JGI) 3300023584 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 178673 220 0 0 0 0 SRX4415592 Unrestricted 0.0 single_particle_sort 3300014420 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.N18 DOE Joint Genome Institute (JGI) 3300014420 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 693190 831 1 0 1 0 SRX3368211 Unrestricted 0.0 single_particle_sort 3300035992 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.L14 DOE Joint Genome Institute (JGI) 3300035992 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 894778 957 0 0 0 0 SRX8856229 Unrestricted 0.0 single_particle_sort 3300016406 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-J18 DOE Joint Genome Institute (JGI) 3300016406 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 1065966 1038 0 0 0 0 SRX3540655 Unrestricted 0.0 single_particle_sort 3300023907 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.M14 DOE Joint Genome Institute (JGI) 3300023907 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 846643 955 0 0 0 0 SRX4519616 Unrestricted 0.0 single_particle_sort 3300033226 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.J17 DOE Joint Genome Institute (JGI) 3300033226 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 1010122 900 0 0 0 0 SRX7630248 Unrestricted 0.0 single_particle_sort 3300032474 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.N22 DOE Joint Genome Institute (JGI) 3300032474 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 538046 598 0 0 0 0 SRX6429248 Unrestricted 0.0 single_particle_sort 3300023724 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR46.Redo.05.E22 DOE Joint Genome Institute (JGI) 3300023724 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.242 21.4899 27536 27 0 0 0 0 SRX4391292 Unrestricted 0.0 single_particle_sort 3300018240 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_I4 DOE Joint Genome Institute (JGI) 3300018240 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 624884 653 0 0 0 0 SRX4652200 Unrestricted 0.0 single_particle_sort 3300015805 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-K17 DOE Joint Genome Institute (JGI) 3300015805 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 215607 271 0 0 0 0 SRX3562999 Unrestricted 0.0 single_particle_sort 3300016315 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Omnitrophica bacterium SCGC_AG-278-L19 DOE Joint Genome Institute (JGI) 3300016315 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 837451 768 1 0 0 0 SRX3578384 Unrestricted 0.0 single_particle_sort 3300014467 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.K19 DOE Joint Genome Institute (JGI) 3300014467 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1632095 1584 1 0 0 0 SRX3367790 Unrestricted 0.0 single_particle_sort 3300048754 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_D6_SVS DOE Joint Genome Institute (JGI) 3300048754 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 80093 139 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300071314 *Microbiome Permanent Draft Comparing whole genome amplification chemistries for bacterial single cell genomics Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - scBac_Watchmaker_EnviBac_sc_well3B_S79 Stanford University 3300071314 Metagenome - Single Particle Sort Spades v. 3.15.3 released per request -- IMGSUPP-4358 No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 736606 818 1 0 1 0 0.0 single_particle_sort 3300016433 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown archaeum SCGC_AG-278-D19 DOE Joint Genome Institute (JGI) 3300016433 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 999498 1182 1 0 1 0 SRX3578355 Unrestricted 0.0 single_particle_sort 3300014435 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.N08 DOE Joint Genome Institute (JGI) 3300014435 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 889514 994 0 0 1 0 SRX3368363 Unrestricted 0.0 single_particle_sort 3300021988 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface water in Homestake Mine, Lead, South Dakota, United States - Woesebacteria_archaeum_AG-138-E14 DOE Joint Genome Institute (JGI) 3300021988 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater, Deep subsurface Mine, Mine water subsurface water 44.3561 -103.7647 215398 268 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300018101 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - uncultured microorganism JGI MDM2 ZSSED05-2-K20 DOE Joint Genome Institute (JGI) 3300018101 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 203858 252 0 0 0 0 SRX3917994 Unrestricted 0.0 single_particle_sort 3300019968 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-G19 DOE Joint Genome Institute (JGI) 3300019968 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 380775 451 0 0 0 0 SRX4654666 Unrestricted 0.0 single_particle_sort 3300015616 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from a deep sea mud volcano in Anaximander Mountains, Eastern Mediterranean Sea - B17.1.2014-1113 MDM2 B17 p1 16S.F9.double-seq DOE Joint Genome Institute (JGI) 3300015616 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Mud volcano Marine Unclassified Deep sea volcano 35.7369 30.475 45833 59 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300016415 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Saccharibacteria bacterium SCGC_AG-278-D23 DOE Joint Genome Institute (JGI) 3300016415 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 1024860 1094 1 0 1 0 SRX3578351 Unrestricted 0.0 single_particle_sort 3300021771 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.G13 DOE Joint Genome Institute (JGI) 3300021771 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 649352 826 0 0 0 0 SRX4005578 Unrestricted 0.0 single_particle_sort 3300016306 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-C04 DOE Joint Genome Institute (JGI) 3300016306 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 585351 758 1 0 0 0 SRX3560637 Unrestricted 0.0 single_particle_sort 3300023154 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.H6 DOE Joint Genome Institute (JGI) 3300023154 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1560384 1602 1 0 1 0 SRX4510232 Unrestricted 0.0 single_particle_sort 3300015816 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-E05 DOE Joint Genome Institute (JGI) 3300015816 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 253434 304 0 0 0 0 SRX3551009 Unrestricted 0.0 single_particle_sort 3300033900 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.M14 DOE Joint Genome Institute (JGI) 3300033900 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 256457 302 0 0 0 0 SRX7626391 Unrestricted 0.0 single_particle_sort 3300014413 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.G09 DOE Joint Genome Institute (JGI) 3300014413 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 604771 725 0 0 0 0 SRX3368450 Unrestricted 0.0 single_particle_sort 3300032508 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.I22 DOE Joint Genome Institute (JGI) 3300032508 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 150027 161 1 0 1 0 SRX6452167 Unrestricted 0.0 single_particle_sort 3300015711 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-H12 DOE Joint Genome Institute (JGI) 3300015711 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 131530 165 0 0 0 0 SRX3563399 Unrestricted 0.0 single_particle_sort 3300015942 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-N19 DOE Joint Genome Institute (JGI) 3300015942 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 351822 405 0 0 0 0 SRX3560795 Unrestricted 0.0 single_particle_sort 3300051132 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_M21_SVS DOE Joint Genome Institute (JGI) 3300051132 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 15759 38 0 0 0 0 Restricted 0.0 single_particle_sort 3300022049 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Atribacteria bacterium JGI MDM2 LBsed72-1-L13 DOE Joint Genome Institute (JGI) 3300022049 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment freshwater sediment 53.7598 107.9791 1166493 1269 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300015652 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from unchlorinated drinking water from Apeldoorn WTP, Netherlands - VDW.1.2014 0529 MDM2 VDW1 p1 pyro.K17.double-peak DOE Joint Genome Institute (JGI) 3300015652 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Drinking water Freshwater Unchlorinated Freshwater 52.2278 5.919 653804 816 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300021676 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.J13 DOE Joint Genome Institute (JGI) 3300021676 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 207617 247 0 0 0 0 SRX4009659 Unrestricted 0.0 single_particle_sort 3300024604 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-A15 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024604 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 38521 44 0 0 0 0 0.0 single_particle_sort 3300014335 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.G14 DOE Joint Genome Institute (JGI) 3300014335 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1002588 1252 1 0 2 0 SRX3298993 Unrestricted 0.0 single_particle_sort 3300016044 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-274-O04 DOE Joint Genome Institute (JGI) 3300016044 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 446236 527 1 0 0 0 SRX3578302 Unrestricted 0.0 single_particle_sort 3300023569 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.E8 DOE Joint Genome Institute (JGI) 3300023569 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 34100 40 0 0 0 0 SRX4415640 Unrestricted 0.0 single_particle_sort 3300015417 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Omnitrophica bacterium SCGC_AG-128-N19 DOE Joint Genome Institute (JGI) 3300015417 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 1202959 1185 1 0 1 0 SRX3577086 Unrestricted 0.0 single_particle_sort 3300016333 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown bacterium SCGC_AG-657-M15 DOE Joint Genome Institute (JGI) 3300016333 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 848027 798 1 0 1 0 SRX3601832 Unrestricted 0.0 single_particle_sort 3300015852 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-B14 DOE Joint Genome Institute (JGI) 3300015852 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 147971 192 0 0 0 0 SRX3540861 Unrestricted 0.0 single_particle_sort 3300016144 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_E21 DOE Joint Genome Institute (JGI) 3300016144 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 902688 649 0 0 0 0 SRX4065893 Unrestricted 0.0 single_particle_sort 3300021643 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.K5 DOE Joint Genome Institute (JGI) 3300021643 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 69499 88 0 0 0 0 SRX4009359 Unrestricted 0.0 single_particle_sort 3300022278 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - unknown_bacterium_SCGC_AH-147-J11 Bigelow Laboratory for Ocean Sciences 3300022278 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 1143754 1070 1 0 1 0 0.0 single_particle_sort 3300033764 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P2_A7 DOE Joint Genome Institute (JGI) 3300033764 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 15984 21 0 0 0 0 SRX7525346 Unrestricted 0.0 single_particle_sort 3300024804 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-D11 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024804 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 196464 243 0 0 0 0 0.0 single_particle_sort 3300022610 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Rhodospirillales bacterium JGI PCGPRD042217_5 DOE Joint Genome Institute (JGI) 3300022610 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 248861 306 0 0 2 0 SRX4414627 Unrestricted 0.0 single_particle_sort 3300021614 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.L8 DOE Joint Genome Institute (JGI) 3300021614 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 25111 33 0 0 0 0 SRX4009940 Unrestricted 0.0 single_particle_sort 3300016113 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-582-J10 DOE Joint Genome Institute (JGI) 3300016113 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 510540 601 1 0 0 0 SRX3580231 Unrestricted 0.0 single_particle_sort 3300032352 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.I5 DOE Joint Genome Institute (JGI) 3300032352 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 364522 433 1 0 1 0 SRX6433378 Unrestricted 0.0 single_particle_sort 3300016390 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - Cyanobacteria_bacterium_AG-640-J16 DOE Joint Genome Institute (JGI) 3300016390 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 1051956 939 1 0 1 0 SRX3784272 Unrestricted 0.0 single_particle_sort 3300038233 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.J18 DOE Joint Genome Institute (JGI) 3300038233 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 90321 102 0 0 0 0 SRX9411072 Unrestricted 0.0 single_particle_sort 3300034754 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.3.C21 DOE Joint Genome Institute (JGI) 3300034754 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 843846 908 0 0 0 0 SRX8390301 Unrestricted 0.0 single_particle_sort 3300022087 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - Candidate_division_AC1_(TA06)_bacterium_AG-188-P22 DOE Joint Genome Institute (JGI) 3300022087 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater, Deep subsurface Drilled well/Borehole groundwater -28.317 27.772 1044470 1031 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300021814 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.E13 DOE Joint Genome Institute (JGI) 3300021814 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 905555 894 0 0 0 0 SRX3989634 Unrestricted 0.0 single_particle_sort 3300034619 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.H11 DOE Joint Genome Institute (JGI) 3300034619 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1094274 1149 1 0 1 0 SRX8394780 Unrestricted 0.0 single_particle_sort 3300032718 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.N15 DOE Joint Genome Institute (JGI) 3300032718 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 163130 201 1 0 1 0 SRX6431301 Unrestricted 0.0 single_particle_sort 3300015501 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-L12 DOE Joint Genome Institute (JGI) 3300015501 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 237112 326 0 0 0 0 SRX3549869 Unrestricted 0.0 single_particle_sort 3300016013 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-J19 DOE Joint Genome Institute (JGI) 3300016013 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 438995 483 0 0 1 0 SRX3540652 Unrestricted 0.0 single_particle_sort 3300021759 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.H5 DOE Joint Genome Institute (JGI) 3300021759 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1109480 1219 0 0 0 0 SRX3990766 Unrestricted 0.0 single_particle_sort 3300016518 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Sorted cell/s from deep shales in West Virginia, USA - MahaSR_06_G16 DOE Joint Genome Institute (JGI) 3300016518 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back deep subsurface 39.6017 -79.9761 408822 504 1 0 1 0 SRX3577105 Unrestricted 0.0 single_particle_sort 3300016592 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, USA - Aminicenantes_bacterium_SCGC_AG-640-I17 DOE Joint Genome Institute (JGI) 3300016592 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Acidic Artesian spring Sediment Hot spring sediment 34.9956 -98.6889 7.5 2224569 2025 1 0 1 0 SRX3784240 Unrestricted 0.0 single_particle_sort 3300019494 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Chloroflexi bacterium HL7711_P2H4 JGI 000147CP-B10 DOE Joint Genome Institute (JGI) 3300019494 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 456278 448 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300035884 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.K16 DOE Joint Genome Institute (JGI) 3300035884 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1162529 1254 0 0 0 0 SRX8857417 Unrestricted 0.0 single_particle_sort 3300015674 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Gongxiaoshe hot spring sediment, Tengchong, China - GXS.2.2014 1201 MDM2 GXS p2 16S.B8.double-seq DOE Joint Genome Institute (JGI) 3300015674 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 25.4401 98.4408 1337567 1302 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033958 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.K14 DOE Joint Genome Institute (JGI) 3300033958 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 220508 235 1 0 1 0 SRX7630366 Unrestricted 0.0 single_particle_sort 3300014444 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.E19 DOE Joint Genome Institute (JGI) 3300014444 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1085607 1235 1 0 0 0 SRX3298911 Unrestricted 0.0 single_particle_sort 3300033648 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P2_L11 DOE Joint Genome Institute (JGI) 3300033648 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 3188 4 0 0 0 0 SRX7529888 Unrestricted 0.0 single_particle_sort 3300038206 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.F13 DOE Joint Genome Institute (JGI) 3300038206 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 445193 528 0 0 0 0 SRX9411026 Unrestricted 0.0 single_particle_sort 3300041205 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.G9 DOE Joint Genome Institute (JGI) 3300041205 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1094970 1030 1 0 0 0 SRX9657220 Unrestricted 0.0 single_particle_sort 3300015874 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_B17 DOE Joint Genome Institute (JGI) 3300015874 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 210454 250 0 0 0 0 SRX4065915 Unrestricted 0.0 single_particle_sort 3300023740 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.05.C20 DOE Joint Genome Institute (JGI) 3300023740 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 87245 104 0 0 0 0 SRX4391165 Unrestricted 0.0 single_particle_sort 3300024064 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.C11 DOE Joint Genome Institute (JGI) 3300024064 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 63088 84 1 0 1 0 SRX4502639 Unrestricted 0.0 single_particle_sort 3300033341 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.K8 DOE Joint Genome Institute (JGI) 3300033341 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 123503 157 0 0 0 0 SRX7630531 Unrestricted 0.0 single_particle_sort 3300032663 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.H14 DOE Joint Genome Institute (JGI) 3300032663 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 257476 316 0 0 0 0 SRX6431737 Unrestricted 0.0 single_particle_sort 3300018224 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_B6 DOE Joint Genome Institute (JGI) 3300018224 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 618572 639 0 0 0 0 SRX4650611 Unrestricted 0.0 single_particle_sort 3300033285 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.E14 DOE Joint Genome Institute (JGI) 3300033285 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 66689 52 0 0 0 0 SRX7630605 Unrestricted 0.0 single_particle_sort 3300033848 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.H5 DOE Joint Genome Institute (JGI) 3300033848 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 274561 318 0 0 0 0 SRX7626151 Unrestricted 0.0 single_particle_sort 3300015037 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.K5 DOE Joint Genome Institute (JGI) 3300015037 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 410547 526 1 0 1 0 Restricted 0.0 single_particle_sort 3300041252 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.C6 DOE Joint Genome Institute (JGI) 3300041252 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1122936 1247 0 0 0 0 SRX9651690 Unrestricted 0.0 single_particle_sort 3300024675 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-K07 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024675 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 74573 103 0 0 0 0 0.0 single_particle_sort 3300051128 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_P15_SVS DOE Joint Genome Institute (JGI) 3300051128 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 104002 135 0 0 0 0 Restricted 0.0 single_particle_sort 3300016020 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-G19 DOE Joint Genome Institute (JGI) 3300016020 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 374567 491 0 0 0 0 SRX3548651 Unrestricted 0.0 single_particle_sort 3300024089 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.N6 DOE Joint Genome Institute (JGI) 3300024089 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 831374 909 1 0 1 0 SRX4524222 Unrestricted 0.0 single_particle_sort 3300022623 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Caulobacterales bacterium JGI PCGPRD042217_25 DOE Joint Genome Institute (JGI) 3300022623 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 811299 999 1 0 1 0 SRX4415199 Unrestricted 0.0 single_particle_sort 3300016490 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-E02 DOE Joint Genome Institute (JGI) 3300016490 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 120676 142 0 0 0 0 SRX3577116 Unrestricted 0.0 single_particle_sort 3300024875 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.05.C4 DOE Joint Genome Institute (JGI) 3300024875 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 191404 233 0 0 0 0 SRX4390952 Unrestricted 0.0 single_particle_sort 3300015137 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - unknown bacterium SCGC_AG-290-E05 DOE Joint Genome Institute (JGI) 3300015137 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 590589 634 1 0 1 0 SRX3578550 Unrestricted 0.0 single_particle_sort 3300024189 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Pedobacter bacterium JGI PFNR15_H13 DOE Joint Genome Institute (JGI) 3300024189 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 1785480 1849 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300016120 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Microgenometes bacterium SCGC_AG-274-N19 DOE Joint Genome Institute (JGI) 3300016120 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 499813 621 1 0 1 0 SRX3578299 Unrestricted 0.0 single_particle_sort 3300035869 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.L17 DOE Joint Genome Institute (JGI) 3300035869 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 754631 814 0 0 0 0 SRX8856774 Unrestricted 0.0 single_particle_sort 3300050912 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-C19 DOE Joint Genome Institute (JGI) 3300050912 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 1339297 1385 1 0 1 0 Restricted 0.0 single_particle_sort 3300050998 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 173_M17_SVS DOE Joint Genome Institute (JGI) 3300050998 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 92002 154 0 0 0 0 Restricted 0.0 single_particle_sort 3300018368 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-I15 DOE Joint Genome Institute (JGI) 3300018368 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1717182 1681 0 0 0 0 SRX3981033 Unrestricted 0.0 single_particle_sort 3300016135 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacterium bacterium SCGC_AG-582-G15 DOE Joint Genome Institute (JGI) 3300016135 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 590626 641 0 0 1 0 SRX3579964 Unrestricted 0.0 single_particle_sort 3300016067 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Microgenometes bacterium SCGC_AG-274-B17 DOE Joint Genome Institute (JGI) 3300016067 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 477228 548 1 0 1 0 SRX3578243 Unrestricted 0.0 single_particle_sort 3300041216 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.D14 DOE Joint Genome Institute (JGI) 3300041216 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1310390 1509 0 0 0 0 SRX9652642 Unrestricted 0.0 single_particle_sort 3300033441 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.I6 DOE Joint Genome Institute (JGI) 3300033441 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 975661 1030 1 0 1 0 SRX7630278 Unrestricted 0.0 single_particle_sort 3300038215 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.E18 DOE Joint Genome Institute (JGI) 3300038215 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 230191 273 0 0 0 0 SRX9411055 Unrestricted 0.0 single_particle_sort 3300014033 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.G21 DOE Joint Genome Institute (JGI) 3300014033 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 998868 1179 1 0 1 0 SRX3299007 Unrestricted 0.0 single_particle_sort 3300050846 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_J16_SVS DOE Joint Genome Institute (JGI) 3300050846 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 86501 139 0 0 0 0 Restricted 0.0 single_particle_sort 3300036639 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.J21 DOE Joint Genome Institute (JGI) 3300036639 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 1082084 1294 0 0 0 0 SRX8904547 Unrestricted 0.0 single_particle_sort 3300016167 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG-582-E16 DOE Joint Genome Institute (JGI) 3300016167 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 586268 684 1 0 0 0 SRX3579952 Unrestricted 0.0 single_particle_sort 3300016035 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG-582-I20 DOE Joint Genome Institute (JGI) 3300016035 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 396101 515 0 0 1 0 SRX3580007 Unrestricted 0.0 single_particle_sort 3300019619 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-G04 DOE Joint Genome Institute (JGI) 3300019619 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 69660 96 0 0 1 0 SRX3560317 Unrestricted 0.0 single_particle_sort 3300050956 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_C3_SVS DOE Joint Genome Institute (JGI) 3300050956 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 116670 136 0 0 0 0 Restricted 0.0 single_particle_sort 3300050873 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_C19_SVS DOE Joint Genome Institute (JGI) 3300050873 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 48349 83 0 0 0 0 Restricted 0.0 single_particle_sort 3300019394 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16046 DOE Joint Genome Institute (JGI) 3300019394 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 1352871 1595 1 0 1 0 SRX3987254 Unrestricted 0.0 single_particle_sort 3300019777 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from Cistern Spring water, Yellowstone National Park, Wyoming, United States - Nanoarchaeum sp. JGI 000158CP-H05 DOE Joint Genome Institute (JGI) 3300019777 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hypoxic/sulfidic water 44.723 -110.7041 106721 139 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300019986 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-G16 DOE Joint Genome Institute (JGI) 3300019986 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 713426 798 0 0 0 0 SRX4654662 Unrestricted 0.0 single_particle_sort 3300015891 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-578-D08 DOE Joint Genome Institute (JGI) 3300015891 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 261501 302 1 0 0 0 SRX3579184 Unrestricted 0.0 single_particle_sort 3300015398 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Omnitrophica bacterium SCGC_AG-128-B14 DOE Joint Genome Institute (JGI) 3300015398 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 792257 772 1 0 1 0 SRX3574227 Unrestricted 0.0 single_particle_sort 3300033369 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.F12 DOE Joint Genome Institute (JGI) 3300033369 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 947611 1026 0 0 0 0 SRX7627734 Unrestricted 0.0 single_particle_sort 3300014462 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.N11 DOE Joint Genome Institute (JGI) 3300014462 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1587790 1534 1 0 0 0 SRX3368148 Unrestricted 0.0 single_particle_sort 3300015510 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-L13 DOE Joint Genome Institute (JGI) 3300015510 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 311794 395 0 0 1 0 SRX3560356 Unrestricted 0.0 single_particle_sort 3300016602 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, USA - Latescibacteria_bacterium_SCGC_AG-640-J18 DOE Joint Genome Institute (JGI) 3300016602 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Acidic Artesian spring Sediment Hot spring sediment 34.9956 -98.6889 7.5 2419969 2201 1 0 1 0 SRX3784269 Unrestricted 0.0 single_particle_sort 3300015758 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-G19 DOE Joint Genome Institute (JGI) 3300015758 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 151740 202 0 0 0 0 SRX3560816 Unrestricted 0.0 single_particle_sort 3300050784 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_E18_SVS DOE Joint Genome Institute (JGI) 3300050784 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 147724 229 0 0 0 0 Restricted 0.0 single_particle_sort 3300018195 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_B7 DOE Joint Genome Institute (JGI) 3300018195 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 421753 461 0 0 0 0 SRX4652597 Unrestricted 0.0 single_particle_sort 3300024770 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-O02 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024770 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 149094 202 0 0 0 0 0.0 single_particle_sort 3300035997 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.C15 DOE Joint Genome Institute (JGI) 3300035997 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 547853 596 0 0 0 0 SRX8856746 Unrestricted 0.0 single_particle_sort 3300016243 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-578-F09 DOE Joint Genome Institute (JGI) 3300016243 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 489784 555 1 0 0 0 SRX3579195 Unrestricted 0.0 single_particle_sort 3300015796 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-K11 DOE Joint Genome Institute (JGI) 3300015796 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 194210 251 0 0 0 0 SRX3560726 Unrestricted 0.0 single_particle_sort 3300036729 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.K8.redo DOE Joint Genome Institute (JGI) 3300036729 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 1392682 1586 0 0 0 0 SRX8905448 Unrestricted 0.0 single_particle_sort 3300037909 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.F11 DOE Joint Genome Institute (JGI) 3300037909 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 842156 1152 0 0 0 0 SRX9410336 Unrestricted 0.0 single_particle_sort 3300016276 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-F06 DOE Joint Genome Institute (JGI) 3300016276 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 635184 704 0 0 1 0 SRX3562924 Unrestricted 0.0 single_particle_sort 3300018095 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - uncultured microorganism JGI MDM2 ZSSED05-1-K21 DOE Joint Genome Institute (JGI) 3300018095 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 151858 177 1 0 0 0 SRX3916445 Unrestricted 0.0 single_particle_sort 3300023902 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.M18 DOE Joint Genome Institute (JGI) 3300023902 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 829825 946 1 0 0 0 SRX4501572 Unrestricted 0.0 single_particle_sort 3300016579 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Aminicenantes_bacterium_SCGC_AG-636-O15 DOE Joint Genome Institute (JGI) 3300016579 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Sediment Freshwater Unclassified Freshwater sediment 53.7598 107.9791 7.32 1953073 1817 1 0 1 0 SRX3784465 Unrestricted 0.0 single_particle_sort 3300014381 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.J15 DOE Joint Genome Institute (JGI) 3300014381 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 136969 183 0 0 0 0 SRX3366648 Unrestricted 0.0 single_particle_sort 3300023845 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.G9 DOE Joint Genome Institute (JGI) 3300023845 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 520177 646 1 0 1 0 SRX4524221 Unrestricted 0.0 single_particle_sort 3300023288 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Deep Lake surface water, Antarctica - Uncultured microbe JGI DeepLkS.SYBR.02.N6 DOE Joint Genome Institute (JGI) 3300023288 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5558 78.1913 750037 799 0 0 0 0 SRX4547885 Unrestricted 0.0 single_particle_sort 3300015523 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-I04 DOE Joint Genome Institute (JGI) 3300015523 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 439275 439 0 0 1 0 SRX3560328 Unrestricted 0.0 single_particle_sort 3300015028 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.L19 DOE Joint Genome Institute (JGI) 3300015028 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 353154 448 1 0 1 0 Restricted 0.0 single_particle_sort 3300041146 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.F20 DOE Joint Genome Institute (JGI) 3300041146 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 254576 329 0 0 0 0 SRX9654201 Unrestricted 0.0 single_particle_sort 3300038145 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.K7 DOE Joint Genome Institute (JGI) 3300038145 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 977554 1288 0 0 0 0 SRX9411766 Unrestricted 0.0 single_particle_sort 3300035773 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.F18 DOE Joint Genome Institute (JGI) 3300035773 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 395069 448 1 0 1 0 SRX8858070 Unrestricted 0.0 single_particle_sort 3300051065 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_K10_SVS DOE Joint Genome Institute (JGI) 3300051065 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 118975 131 0 0 0 0 Restricted 0.0 single_particle_sort 3300015947 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-N20 DOE Joint Genome Institute (JGI) 3300015947 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 382111 411 0 0 1 0 SRX3580242 Unrestricted 0.0 single_particle_sort 3300051137 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_A14_SVS DOE Joint Genome Institute (JGI) 3300051137 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 280062 392 0 0 0 0 Restricted 0.0 single_particle_sort 3300018330 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_B13 DOE Joint Genome Institute (JGI) 3300018330 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 1287705 1370 0 0 0 0 SRX4647588 Unrestricted 0.0 single_particle_sort 3300015657 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from a deep sea mud volcano in Anaximander Mountains, Eastern Mediterranean Sea - B25.1.2014 1113 MDM2 B25 p1 16S.L7.double-seq DOE Joint Genome Institute (JGI) 3300015657 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Mud volcano Marine Unclassified Deep sea volcano 35.3338 30.2722 809443 884 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300023645 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.J16 DOE Joint Genome Institute (JGI) 3300023645 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 294316 288 0 0 0 0 SRX4547982 Unrestricted 0.0 single_particle_sort 3300015128 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-C11 DOE Joint Genome Institute (JGI) 3300015128 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 460491 559 0 0 0 0 SRX3578309 Unrestricted 0.0 single_particle_sort 3300023955 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.E21 DOE Joint Genome Institute (JGI) 3300023955 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 1154934 1341 0 0 1 0 SRX4549233 Unrestricted 0.0 single_particle_sort 3300033469 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.C10 DOE Joint Genome Institute (JGI) 3300033469 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 457527 490 1 0 1 0 SRX7630342 Unrestricted 0.0 single_particle_sort 3300015412 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Omnitrophica bacterium SCGC_AG-128-B07 DOE Joint Genome Institute (JGI) 3300015412 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 985301 1001 1 0 0 0 SRX3574217 Unrestricted 0.0 single_particle_sort 3300049971 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_M19_SVS DOE Joint Genome Institute (JGI) 3300049971 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 59521 63 0 0 0 0 Restricted 0.0 single_particle_sort 3300035746 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.K11 DOE Joint Genome Institute (JGI) 3300035746 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 922616 955 1 0 1 0 SRX8857533 Unrestricted 0.0 single_particle_sort 3300019678 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-D16 DOE Joint Genome Institute (JGI) 3300019678 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 384558 442 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300041173 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.1.D15 DOE Joint Genome Institute (JGI) 3300041173 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 54865 70 0 0 0 0 SRX9654897 Unrestricted 0.0 single_particle_sort 3300015498 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-C17 DOE Joint Genome Institute (JGI) 3300015498 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 293367 322 1 0 1 0 SRX3549159 Unrestricted 0.0 single_particle_sort 3300015783 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-C14 DOE Joint Genome Institute (JGI) 3300015783 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 207673 242 0 0 1 0 SRX3560937 Unrestricted 0.0 single_particle_sort 3300038045 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.I9 DOE Joint Genome Institute (JGI) 3300038045 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 689462 792 0 0 0 0 SRX9411268 Unrestricted 0.0 single_particle_sort 3300015857 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-E13 DOE Joint Genome Institute (JGI) 3300015857 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 168551 204 0 0 0 0 SRX3542765 Unrestricted 0.0 single_particle_sort 3300036059 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_D6 DOE Joint Genome Institute (JGI) 3300036059 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 52116 73 0 0 0 0 SRX10045902 Unrestricted 0.0 single_particle_sort 3300023329 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.C10 DOE Joint Genome Institute (JGI) 3300023329 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 633296 652 1 0 0 0 SRX4520370 Unrestricted 0.0 single_particle_sort 3300014481 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.I07 DOE Joint Genome Institute (JGI) 3300014481 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1666944 1902 1 0 1 0 SRX3364225 Unrestricted 0.0 single_particle_sort 3300041304 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.H4 DOE Joint Genome Institute (JGI) 3300041304 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1023148 1024 1 0 1 0 SRX9523935 Unrestricted 0.0 single_particle_sort 3300019993 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-F19 DOE Joint Genome Institute (JGI) 3300019993 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 1674504 1482 0 0 1 0 SRX4654448 Unrestricted 0.0 single_particle_sort 3300035841 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0815.Sybr.01.M14 DOE Joint Genome Institute (JGI) 3300035841 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 917737 959 0 0 1 0 SRX8894644 Unrestricted 0.0 single_particle_sort 3300050769 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_O2_SVS DOE Joint Genome Institute (JGI) 3300050769 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 67519 84 0 0 0 0 Restricted 0.0 single_particle_sort 3300013036 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - DC4.5.2015 0309 DC4 p5 16S.D17.double-peak DOE Joint Genome Institute (JGI) 3300013036 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 575206 700 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300014976 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.J9 DOE Joint Genome Institute (JGI) 3300014976 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 230484 298 0 0 0 0 Restricted 0.0 single_particle_sort 3300033384 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.I9 DOE Joint Genome Institute (JGI) 3300033384 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 118760 140 0 0 0 0 SRX7630535 Unrestricted 0.0 single_particle_sort 3300071290 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_PTA_A05_scBac_plate.C DOE Joint Genome Institute (JGI) 3300071290 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 6991673 6751 6 0 7 0 Unrestricted 0.0 single_particle_sort 3300034471 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.K21 DOE Joint Genome Institute (JGI) 3300034471 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 422118 470 0 0 0 0 SRX8389566 Unrestricted 0.0 single_particle_sort 3300018325 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_I8 DOE Joint Genome Institute (JGI) 3300018325 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1486427 1371 0 0 0 0 SRX4649712 Unrestricted 0.0 single_particle_sort 3300015456 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-D16 DOE Joint Genome Institute (JGI) 3300015456 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 136290 165 0 0 0 0 SRX3549158 Unrestricted 0.0 single_particle_sort 3300035951 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.K22 DOE Joint Genome Institute (JGI) 3300035951 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1179026 1324 1 0 1 0 SRX8862680 Unrestricted 0.0 single_particle_sort 3300015595 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-I15 DOE Joint Genome Institute (JGI) 3300015595 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 1489702 1521 0 0 1 0 SRX3549823 Unrestricted 0.0 single_particle_sort 3300019799 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-K17 DOE Joint Genome Institute (JGI) 3300019799 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 251290 331 0 0 0 0 SRX4663344 Unrestricted 0.0 single_particle_sort 3300050963 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_I5_SVS DOE Joint Genome Institute (JGI) 3300050963 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 164542 232 0 0 0 0 Restricted 0.0 single_particle_sort 3300049959 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_J23_SVS DOE Joint Genome Institute (JGI) 3300049959 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 18154 12 0 0 0 0 Restricted 0.0 single_particle_sort 3300071233 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_PTA_C05_scBac_plate.C DOE Joint Genome Institute (JGI) 3300071233 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 4154690 4433 2 0 1 1 Unrestricted 0.0 single_particle_sort 3300035260 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_N22 DOE Joint Genome Institute (JGI) 3300035260 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 36854 53 0 0 0 0 SRX9537814 Unrestricted 0.0 single_particle_sort 3300018010 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Chlorobiales_bacterium_SCGC_AG-650-A19 DOE Joint Genome Institute (JGI) 3300018010 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1297671 1112 1 0 1 0 SRX3974904 Unrestricted 0.0 single_particle_sort 3300032357 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.E15 DOE Joint Genome Institute (JGI) 3300032357 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 511589 585 0 0 0 0 SRX6433684 Unrestricted 0.0 single_particle_sort 3300034459 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.H16 DOE Joint Genome Institute (JGI) 3300034459 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 623627 671 0 0 1 0 SRX8389550 Unrestricted 0.0 single_particle_sort 3300016081 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown_bacterium_SCGC_AG-516-J15 DOE Joint Genome Institute (JGI) 3300016081 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Groundwater -28.24 26.8 8.55 554734 562 0 0 0 0 SRX3784214 Unrestricted 0.0 single_particle_sort 3300048993 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_C19_SVS DOE Joint Genome Institute (JGI) 3300048993 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 16044 26 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035979 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.E17 DOE Joint Genome Institute (JGI) 3300035979 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 442068 466 0 0 0 0 SRX8854174 Unrestricted 0.0 single_particle_sort 3300071206 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_D03_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071206 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 2958161 3088 1 2 3 0 Unrestricted 0.0 single_particle_sort 3300018393 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_K18 DOE Joint Genome Institute (JGI) 3300018393 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 2451898 2332 0 0 0 0 SRX4646594 Unrestricted 0.0 single_particle_sort 3300016181 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-L11 DOE Joint Genome Institute (JGI) 3300016181 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 593217 711 1 0 1 0 SRX3563024 Unrestricted 0.0 single_particle_sort 3300041291 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.G16 DOE Joint Genome Institute (JGI) 3300041291 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1976171 1937 1 0 1 0 SRX9654996 Unrestricted 0.0 single_particle_sort 3300016597 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Aminicenantes_bacterium_SCGC_AG-636-P03 DOE Joint Genome Institute (JGI) 3300016597 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 2175766 2092 0 0 0 0 SRX3784476 Unrestricted 0.0 single_particle_sort 3300036071 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_B10 DOE Joint Genome Institute (JGI) 3300036071 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 72249 95 0 0 0 0 SRX10046096 Unrestricted 0.0 single_particle_sort 3300018110 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-C11 DOE Joint Genome Institute (JGI) 3300018110 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 284084 274 0 0 0 0 SRX3974492 Unrestricted 0.0 single_particle_sort 3300015989 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Thaumarchaeota archaeum SCGC_AG-657-C14 DOE Joint Genome Institute (JGI) 3300015989 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 360250 460 0 0 0 0 SRX3594358 Unrestricted 0.0 single_particle_sort 3300022082 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from freshwater lake hypolimnion in Alinen Mustajarvi, Pori, Finland - Parcubacteria bacterium JGI MDM2 000213CP-I9 DOE Joint Genome Institute (JGI) 3300022082 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Unclassified freshwater 61.5637 22.044 432037 501 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300015964 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Methylomirabilis bacterium SCGC_AG-657-O06 DOE Joint Genome Institute (JGI) 3300015964 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 368350 432 1 0 2 0 SRX3601840 Unrestricted 0.0 single_particle_sort 3300038034 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.05.L16 DOE Joint Genome Institute (JGI) 3300038034 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 633082 707 1 0 1 0 SRX9411194 Unrestricted 0.0 single_particle_sort 3300013305 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - Cesiribacter bacterium JGI ML_1_K14 DOE Joint Genome Institute (JGI) 3300013305 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 38.008 -119.086 2495403 2327 0 0 0 0 SRX4062778 Unrestricted 0.0 single_particle_sort 3300023634 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.F20 DOE Joint Genome Institute (JGI) 3300023634 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 64530 78 0 0 0 0 SRX4416321 Unrestricted 0.0 single_particle_sort 3300041375 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.M9 DOE Joint Genome Institute (JGI) 3300041375 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 549666 619 0 0 0 0 SRX9649229 Unrestricted 0.0 single_particle_sort 3300016062 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Microgenometes bacterium SCGC_AG-274-D02 DOE Joint Genome Institute (JGI) 3300016062 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 453178 545 1 0 0 0 SRX3578250 Unrestricted 0.0 single_particle_sort 3300032656 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.G9 DOE Joint Genome Institute (JGI) 3300032656 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 389960 487 1 0 1 0 SRX6431696 Unrestricted 0.0 single_particle_sort 3300038134 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.F4 DOE Joint Genome Institute (JGI) 3300038134 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 555543 615 0 0 0 0 SRX9411757 Unrestricted 0.0 single_particle_sort 3300016214 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-D18 DOE Joint Genome Institute (JGI) 3300016214 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 304035 380 0 0 0 0 SRX3562822 Unrestricted 0.0 single_particle_sort 3300016162 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - Omnitrophica bacterium SCGC_AG-188-G02 DOE Joint Genome Institute (JGI) 3300016162 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 647520 677 1 0 0 0 SRX3577176 Unrestricted 0.0 single_particle_sort 3300018386 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_C16 DOE Joint Genome Institute (JGI) 3300018386 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 2078403 1952 1 0 1 0 SRX4650585 Unrestricted 0.0 single_particle_sort 3300023834 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.M9 DOE Joint Genome Institute (JGI) 3300023834 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 505747 590 0 0 0 0 SRX4548272 Unrestricted 0.0 single_particle_sort 3300033911 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.F17 DOE Joint Genome Institute (JGI) 3300033911 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 397830 486 0 0 0 0 SRX7626525 Unrestricted 0.0 single_particle_sort 3300024594 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-K20 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024594 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 18701 26 0 0 0 0 0.0 single_particle_sort 3300018123 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_L18 DOE Joint Genome Institute (JGI) 3300018123 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 327107 389 0 0 0 0 SRX4646825 Unrestricted 0.0 single_particle_sort 3300071215 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_E05_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071215 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 3617468 4051 2 0 1 0 Unrestricted 0.0 single_particle_sort 3300015032 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.M12 DOE Joint Genome Institute (JGI) 3300015032 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 395298 480 0 0 0 0 Restricted 0.0 single_particle_sort 3300016551 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, USA - Atribacteria_bacterium_SCGC_AG-640-P04 DOE Joint Genome Institute (JGI) 3300016551 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Acidic Artesian spring Sediment Hot spring sediment 34.9956 -98.6889 7.5 1177466 1160 1 0 1 0 SRX3784271 Unrestricted 0.0 single_particle_sort 3300041257 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.K22 DOE Joint Genome Institute (JGI) 3300041257 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1295323 1287 0 0 2 0 SRX9651803 Unrestricted 0.0 single_particle_sort 3300032612 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.F14 DOE Joint Genome Institute (JGI) 3300032612 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 1485518 1627 1 0 1 0 SRX6426235 Unrestricted 0.0 single_particle_sort 3300033231 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.F17 DOE Joint Genome Institute (JGI) 3300033231 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 552473 539 1 0 1 0 SRX7630251 Unrestricted 0.0 single_particle_sort 3300015700 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-E04 DOE Joint Genome Institute (JGI) 3300015700 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 100407 126 0 0 0 0 SRX3563245 Unrestricted 0.0 single_particle_sort 3300050917 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-G06 DOE Joint Genome Institute (JGI) 3300050917 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 806924 882 0 0 0 0 Restricted 0.0 single_particle_sort 3300021794 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.J18 DOE Joint Genome Institute (JGI) 3300021794 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 390551 421 0 0 1 0 SRX3990299 Unrestricted 0.0 single_particle_sort 3300015132 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - Parcubacteria bacterium SCGC_AG-290-C14 DOE Joint Genome Institute (JGI) 3300015132 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 569918 614 0 0 1 0 SRX3578539 Unrestricted 0.0 single_particle_sort 3300032391 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.N13 DOE Joint Genome Institute (JGI) 3300032391 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 808877 1215 0 0 0 0 SRX6433671 Unrestricted 0.0 single_particle_sort 3300041163 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.J20 DOE Joint Genome Institute (JGI) 3300041163 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 494420 519 0 0 1 0 SRX9653851 Unrestricted 0.0 single_particle_sort 3300019668 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-P05 DOE Joint Genome Institute (JGI) 3300019668 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 258168 260 0 0 0 0 SRX3974889 Unrestricted 0.0 single_particle_sort 3300049961 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_J8_SVS DOE Joint Genome Institute (JGI) 3300049961 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 133235 154 0 0 0 0 Restricted 0.0 single_particle_sort 3300024628 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-A06 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024628 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 48525 63 0 0 0 0 0.0 single_particle_sort 3300021688 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.N16 DOE Joint Genome Institute (JGI) 3300021688 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 227211 301 0 0 0 0 SRX4009709 Unrestricted 0.0 single_particle_sort 3300033479 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.C7 DOE Joint Genome Institute (JGI) 3300033479 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 150429 171 0 0 0 0 SRX7630282 Unrestricted 0.0 single_particle_sort 3300023315 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.I9 DOE Joint Genome Institute (JGI) 3300023315 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 135824 149 0 0 0 0 SRX4548998 Unrestricted 0.0 single_particle_sort 3300051075 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 173_H7_SVS DOE Joint Genome Institute (JGI) 3300051075 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 102625 153 0 0 0 0 Restricted 0.0 single_particle_sort 3300034720 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.1.M10 DOE Joint Genome Institute (JGI) 3300034720 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 605960 674 1 0 1 0 SRX8390534 Unrestricted 0.0 single_particle_sort 3300035763 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from MDA reagents in Walnut Creek, California, United States - SPS NoTemplateControl JGI_Crowe.MatanoW.SYBR.03.E23 DOE Joint Genome Institute (JGI) 3300035763 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Engineered Industrial production Reagent blank Chemical products Unclassified MDA reagents 37.9313 -122.0217 60024 69 0 0 0 0 SRX8901580 Unrestricted 0.0 single_particle_sort 3300037926 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.G11 DOE Joint Genome Institute (JGI) 3300037926 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 284169 387 0 0 0 0 SRX9410425 Unrestricted 0.0 single_particle_sort 3300018319 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Chlorobiales_bacterium_SCGC_AG-650-A03 DOE Joint Genome Institute (JGI) 3300018319 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1409310 1267 1 0 0 0 SRX3974897 Unrestricted 0.0 single_particle_sort 3300024828 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-A11 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024828 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 280405 347 0 0 0 0 0.0 single_particle_sort 3300023406 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.H21 DOE Joint Genome Institute (JGI) 3300023406 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 620216 702 1 0 1 0 SRX4520589 Unrestricted 0.0 single_particle_sort 3300022286 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - unknown_bacterium_SCGC_AH-147-I10 Bigelow Laboratory for Ocean Sciences 3300022286 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 1079075 1189 0 0 1 0 0.0 single_particle_sort 3300035818 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0813.Sybr.01.E7 DOE Joint Genome Institute (JGI) 3300035818 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 430458 494 1 0 2 0 SRX8894087 Unrestricted 0.0 single_particle_sort 3300035892 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.E13 DOE Joint Genome Institute (JGI) 3300035892 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 626281 718 0 0 0 0 SRX8898325 Unrestricted 0.0 single_particle_sort 3300018250 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_B5 DOE Joint Genome Institute (JGI) 3300018250 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 801172 847 0 0 0 0 SRX4652198 Unrestricted 0.0 single_particle_sort 3300038007 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.K14 DOE Joint Genome Institute (JGI) 3300038007 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 248416 299 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023607 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.K4 DOE Joint Genome Institute (JGI) 3300023607 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 755302 814 0 0 1 0 SRX4415821 Unrestricted 0.0 single_particle_sort 3300034461 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.F15 DOE Joint Genome Institute (JGI) 3300034461 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 741972 819 0 0 0 0 SRX8389549 Unrestricted 0.0 single_particle_sort 3300022995 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.H9 DOE Joint Genome Institute (JGI) 3300022995 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 815209 969 0 0 1 0 SRX4416502 Unrestricted 0.0 single_particle_sort 3300038107 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .D14 DOE Joint Genome Institute (JGI) 3300038107 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 166221 239 0 0 0 0 SRX9411628 Unrestricted 0.0 single_particle_sort 3300015905 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-J12 DOE Joint Genome Institute (JGI) 3300015905 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 279164 360 0 0 0 0 SRX3562945 Unrestricted 0.0 single_particle_sort 3300036733 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.K10.redo DOE Joint Genome Institute (JGI) 3300036733 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 1013000 1182 0 0 1 0 SRX8907424 Unrestricted 0.0 single_particle_sort 3300050779 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_B7_SVS DOE Joint Genome Institute (JGI) 3300050779 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 54679 82 0 0 0 0 Restricted 0.0 single_particle_sort 3300036601 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.C6 DOE Joint Genome Institute (JGI) 3300036601 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 1163481 1375 0 0 0 0 SRX8901957 Unrestricted 0.0 single_particle_sort 3300023807 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.M5 DOE Joint Genome Institute (JGI) 3300023807 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 422202 465 1 0 1 0 SRX4524486 Unrestricted 0.0 single_particle_sort 3300034713 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.2.H18 DOE Joint Genome Institute (JGI) 3300034713 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 2333772 2404 1 0 1 0 SRX8390471 Unrestricted 0.0 single_particle_sort 3300015539 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-F16 DOE Joint Genome Institute (JGI) 3300015539 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 459204 542 0 0 0 0 SRX3560069 Unrestricted 0.0 single_particle_sort 3300024421 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.N20 DOE Joint Genome Institute (JGI) 3300024421 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 645296 676 0 0 0 0 SRX4547833 Unrestricted 0.0 single_particle_sort 3300016154 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-C17 DOE Joint Genome Institute (JGI) 3300016154 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 635898 662 0 0 0 0 SRX3560454 Unrestricted 0.0 single_particle_sort 3300021653 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.N22 DOE Joint Genome Institute (JGI) 3300021653 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 119782 131 0 0 0 0 SRX4009921 Unrestricted 0.0 single_particle_sort 3300015236 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - Peregrinibacteria bacterium SCGC_AG-290-F10 DOE Joint Genome Institute (JGI) 3300015236 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 789941 851 1 0 0 0 SRX3578555 Unrestricted 0.0 single_particle_sort 3300015842 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-N10 DOE Joint Genome Institute (JGI) 3300015842 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 255864 346 1 0 0 0 SRX3564086 Unrestricted 0.0 single_particle_sort 3300019461 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-2.D8 DOE Joint Genome Institute (JGI) 3300019461 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 36134 56 0 0 0 0 Restricted 0.0 single_particle_sort 3300024587 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-P18 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024587 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 17335 21 0 0 0 0 0.0 single_particle_sort 3300014472 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.I13 DOE Joint Genome Institute (JGI) 3300014472 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1367368 1620 1 0 1 0 SRX3364226 Unrestricted 0.0 single_particle_sort 3300021787 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.G9 DOE Joint Genome Institute (JGI) 3300021787 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 2628720 2616 1 0 1 0 SRX3990027 Unrestricted 0.0 single_particle_sort 3300023415 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.K6 DOE Joint Genome Institute (JGI) 3300023415 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 1010463 1042 0 0 0 0 SRX4548794 Unrestricted 0.0 single_particle_sort 3300024727 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-N10 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024727 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 120745 151 0 0 0 0 0.0 single_particle_sort 3300033379 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.F10 DOE Joint Genome Institute (JGI) 3300033379 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 157929 189 0 0 0 0 SRX7630538 Unrestricted 0.0 single_particle_sort 3300016054 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG_AG-578-D21 DOE Joint Genome Institute (JGI) 3300016054 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 469167 537 1 0 0 0 SRX3579197 Unrestricted 0.0 single_particle_sort 3300015642 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from a deep sea mud volcano in Anaximander Mountains, Eastern Mediterranean Sea - B25.2.2014 1114 MDM2 B25 p2 16S.N6.double-seq DOE Joint Genome Institute (JGI) 3300015642 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Mud volcano Marine Unclassified Deep sea volcano 35.3338 30.2722 510444 603 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300024091 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.E14 DOE Joint Genome Institute (JGI) 3300024091 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1161949 1272 1 0 1 0 SRX4519521 Unrestricted 0.0 single_particle_sort 3300015952 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-M21 DOE Joint Genome Institute (JGI) 3300015952 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 342744 415 0 0 0 0 SRX3563037 Unrestricted 0.0 single_particle_sort 3300023333 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.J13 DOE Joint Genome Institute (JGI) 3300023333 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 791917 796 0 0 0 0 SRX4548847 Unrestricted 0.0 single_particle_sort 3300016569 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_F4 DOE Joint Genome Institute (JGI) 3300016569 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1752110 1662 0 0 0 0 SRX4066380 Unrestricted 0.0 single_particle_sort 3300035717 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_N14 DOE Joint Genome Institute (JGI) 3300035717 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 201573 260 0 0 0 0 SRX10045711 Unrestricted 0.0 single_particle_sort 3300016266 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-D14 DOE Joint Genome Institute (JGI) 3300016266 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 532836 652 1 0 0 0 SRX3562821 Unrestricted 0.0 single_particle_sort 3300019580 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - uncultured microorganism JGI MDM2 ZSSED05-1-L21 DOE Joint Genome Institute (JGI) 3300019580 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 53805 59 0 0 0 0 SRX3917485 Unrestricted 0.0 single_particle_sort 3300023144 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.J7 DOE Joint Genome Institute (JGI) 3300023144 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 855597 943 1 0 2 0 SRX4519116 Unrestricted 0.0 single_particle_sort 3300022293 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - unknown_bacterium_SCGC_AH-147-B23 Bigelow Laboratory for Ocean Sciences 3300022293 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 941117 1080 0 0 0 0 0.0 single_particle_sort 3300041117 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.F8 DOE Joint Genome Institute (JGI) 3300041117 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 81074 105 0 0 0 0 SRX9654640 Unrestricted 0.0 single_particle_sort 3300024760 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-D08 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024760 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 158407 176 0 0 0 0 0.0 single_particle_sort 3300033800 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.H4 DOE Joint Genome Institute (JGI) 3300033800 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 457566 535 1 0 1 0 SRX7626129 Unrestricted 0.0 single_particle_sort 3300015916 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-578-L03 DOE Joint Genome Institute (JGI) 3300015916 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 307941 372 1 0 0 0 SRX3579274 Unrestricted 0.0 single_particle_sort 3300019382 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent microbial mat, Guaymas Basin, Mexico - 6AI_4869_20_06 DOE Joint Genome Institute (JGI) 3300019382 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.001 -110.5998 253544 326 1 0 1 0 SRX3974425 Unrestricted 0.0 single_particle_sort 3300041337 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.M10 DOE Joint Genome Institute (JGI) 3300041337 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 817314 788 1 0 1 0 SRX9646884 Unrestricted 0.0 single_particle_sort 3300016172 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-M10 DOE Joint Genome Institute (JGI) 3300016172 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 617888 697 0 0 1 0 SRX3563929 Unrestricted 0.0 single_particle_sort 3300033858 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.M6 DOE Joint Genome Institute (JGI) 3300033858 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 400423 464 0 0 0 0 SRX7626217 Unrestricted 0.0 single_particle_sort 3300033351 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.L9 DOE Joint Genome Institute (JGI) 3300033351 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 2576322 2858 0 0 1 0 SRX7630534 Unrestricted 0.0 single_particle_sort 3300048735 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_C10_SVS DOE Joint Genome Institute (JGI) 3300048735 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 56854 65 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300036082 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_C15 DOE Joint Genome Institute (JGI) 3300036082 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 206907 269 0 0 1 0 SRX10046320 Unrestricted 0.0 single_particle_sort 3300033497 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.F11 DOE Joint Genome Institute (JGI) 3300033497 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 379944 359 0 0 0 0 SRX7630348 Unrestricted 0.0 single_particle_sort 3300023750 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.D11 DOE Joint Genome Institute (JGI) 3300023750 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 153965 162 0 0 0 0 SRX4549805 Unrestricted 0.0 single_particle_sort 3300023592 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.F14 DOE Joint Genome Institute (JGI) 3300023592 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 356926 404 0 0 0 0 SRX4415692 Unrestricted 0.0 single_particle_sort 3300071229 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_WGAX_D12_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071229 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 832646 896 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300023013 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - Chlorobi bacterium JGI GBS_4_F15 DOE Joint Genome Institute (JGI) 3300023013 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 4023509 3643 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300035984 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.J16 DOE Joint Genome Institute (JGI) 3300035984 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 924748 974 0 0 0 0 SRX8854944 Unrestricted 0.0 single_particle_sort 3300010803 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_3_SCGC_AG-138-B09 DOE Joint Genome Institute (JGI) 3300010803 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 455898 472 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023518 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.D18 DOE Joint Genome Institute (JGI) 3300023518 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 229313 237 0 0 0 0 SRX4548274 Unrestricted 0.0 single_particle_sort 3300041365 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.I21 DOE Joint Genome Institute (JGI) 3300041365 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 243638 249 0 0 1 0 SRX9648149 Unrestricted 0.0 single_particle_sort 3300033658 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P1_N4 DOE Joint Genome Institute (JGI) 3300033658 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 3208 4 0 0 0 0 SRX7530076 Unrestricted 0.0 single_particle_sort 3300033791 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P1_A14 DOE Joint Genome Institute (JGI) 3300033791 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 13141 16 0 0 0 0 SRX7525333 Unrestricted 0.0 single_particle_sort 3300016072 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-H04 DOE Joint Genome Institute (JGI) 3300016072 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 453229 553 0 0 0 0 SRX3563711 Unrestricted 0.0 single_particle_sort 3300014454 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.M04 DOE Joint Genome Institute (JGI) 3300014454 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1159209 1426 1 0 2 0 SRX3367893 Unrestricted 0.0 single_particle_sort 3300033948 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.J13 DOE Joint Genome Institute (JGI) 3300033948 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 431156 534 0 0 0 0 SRX7626280 Unrestricted 0.0 single_particle_sort 3300010731 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_37_SCGC_AG-159-N09 DOE Joint Genome Institute (JGI) 3300010731 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 85598 110 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015974 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-G14 DOE Joint Genome Institute (JGI) 3300015974 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 354546 442 0 0 1 0 SRX3548486 Unrestricted 0.0 single_particle_sort 3300034536 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P9_E17 DOE Joint Genome Institute (JGI) 3300034536 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 8004 10 0 0 0 0 SRX8136710 Unrestricted 0.0 single_particle_sort 3300021749 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.I18 DOE Joint Genome Institute (JGI) 3300021749 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 753171 843 0 0 0 0 SRX3990736 Unrestricted 0.0 single_particle_sort 3300033896 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.E14 DOE Joint Genome Institute (JGI) 3300033896 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 174797 222 0 0 0 0 SRX7626314 Unrestricted 0.0 single_particle_sort 3300024632 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-M17 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024632 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 51795 67 0 0 0 0 0.0 single_particle_sort 3300010836 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_23_SCGC_AG-159-I03 DOE Joint Genome Institute (JGI) 3300010836 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 597818 796 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300034744 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.2.H14 DOE Joint Genome Institute (JGI) 3300034744 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 2818217 2841 1 0 1 0 SRX8390264 Unrestricted 0.0 single_particle_sort 3300051004 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_J4_SVS DOE Joint Genome Institute (JGI) 3300051004 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 30315 52 0 0 0 0 Restricted 0.0 single_particle_sort 3300048720 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_I18_SVS DOE Joint Genome Institute (JGI) 3300048720 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 69054 92 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300037985 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.D15 DOE Joint Genome Institute (JGI) 3300037985 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 751102 996 0 0 0 0 SRX9411027 Unrestricted 0.0 single_particle_sort 3300050797 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_J8_SVS DOE Joint Genome Institute (JGI) 3300050797 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 97010 127 0 0 0 0 Restricted 0.0 single_particle_sort 3300019919 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-M6 DOE Joint Genome Institute (JGI) 3300019919 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 982046 919 0 0 0 0 SRX4663370 Unrestricted 0.0 single_particle_sort 3300050946 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-956-J10 DOE Joint Genome Institute (JGI) 3300050946 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1197303 -42.124435 872190 961 1 0 1 0 Restricted 0.0 single_particle_sort 3300023120 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.M15 DOE Joint Genome Institute (JGI) 3300023120 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 36919 59 0 0 0 0 SRX4509056 Unrestricted 0.0 single_particle_sort 3300041603 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.G4 DOE Joint Genome Institute (JGI) 3300041603 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 683850 757 0 0 0 0 SRX14830571 Unrestricted 0.0 single_particle_sort 3300035270 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_M8 DOE Joint Genome Institute (JGI) 3300035270 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 46894 75 0 0 0 0 SRX9537939 Unrestricted 0.0 single_particle_sort 3300033883 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.H22 DOE Joint Genome Institute (JGI) 3300033883 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 328560 377 0 0 0 0 SRX7626819 Unrestricted 0.0 single_particle_sort 3300050856 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_L9_SVS DOE Joint Genome Institute (JGI) 3300050856 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 38901 43 0 0 0 0 Restricted 0.0 single_particle_sort 3300026612 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-O20 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026612 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 88898 114 0 0 0 0 0.0 single_particle_sort 3300050973 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_N13_SVS DOE Joint Genome Institute (JGI) 3300050973 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 71156 92 0 0 0 0 Restricted 0.0 single_particle_sort 3300019503 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Rhodospirillaceae bacterium HL7711_P1E10 JGI 000149CP-D12 DOE Joint Genome Institute (JGI) 3300019503 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 596192 633 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300033451 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.E7 DOE Joint Genome Institute (JGI) 3300033451 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 861275 775 1 0 1 0 SRX7630276 Unrestricted 0.0 single_particle_sort 3300018208 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_H17 DOE Joint Genome Institute (JGI) 3300018208 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 567829 577 0 0 0 0 SRX4652593 Unrestricted 0.0 single_particle_sort 3300033683 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P9_M20 DOE Joint Genome Institute (JGI) 3300033683 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 4731 8 0 0 0 0 SRX7531291 Unrestricted 0.0 single_particle_sort 3300018139 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Sphingobacteria_bacterium_SCGC_AG-650-A02 DOE Joint Genome Institute (JGI) 3300018139 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 670879 586 2 0 2 0 SRX3974902 Unrestricted 0.0 single_particle_sort 3300050751 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_B14_SVS DOE Joint Genome Institute (JGI) 3300050751 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 75796 119 0 0 0 0 Restricted 0.0 single_particle_sort 3300023167 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.L14 DOE Joint Genome Institute (JGI) 3300023167 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 2393559 2539 1 0 2 0 SRX4509211 Unrestricted 0.0 single_particle_sort 3300041636 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.F16 DOE Joint Genome Institute (JGI) 3300041636 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2954790 2932 1 0 1 0 SRX14835797 Unrestricted 0.0 single_particle_sort 3300036061 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_J6 DOE Joint Genome Institute (JGI) 3300036061 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 139702 208 0 0 0 0 SRX10045919 Unrestricted 0.0 single_particle_sort 3300035969 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.K10 DOE Joint Genome Institute (JGI) 3300035969 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 453170 499 1 0 2 0 SRX8853764 Unrestricted 0.0 single_particle_sort 3300050812 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_O6_SVS DOE Joint Genome Institute (JGI) 3300050812 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 35080 57 0 0 0 0 Restricted 0.0 single_particle_sort 3300023135 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.F19 DOE Joint Genome Institute (JGI) 3300023135 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 498919 594 0 0 0 0 SRX4507423 Unrestricted 0.0 single_particle_sort 3300050898 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_I19_SVS DOE Joint Genome Institute (JGI) 3300050898 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 101046 150 0 0 0 0 Restricted 0.0 single_particle_sort 3300019536 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-3-D19 DOE Joint Genome Institute (JGI) 3300019536 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 22198 21 0 0 0 0 SRX3551358 Unrestricted 0.0 single_particle_sort 3300041242 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.C10 DOE Joint Genome Institute (JGI) 3300041242 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2484032 2513 0 0 0 0 SRX9649230 Unrestricted 0.0 single_particle_sort 3300023602 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.E15 DOE Joint Genome Institute (JGI) 3300023602 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 604503 680 0 0 1 0 SRX4415512 Unrestricted 0.0 single_particle_sort 3300041328 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.I6 DOE Joint Genome Institute (JGI) 3300041328 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 677177 775 0 0 0 0 SRX9646873 Unrestricted 0.0 single_particle_sort 3300019521 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from Echinus Geyser water, Yellowstone National Park, Wyoming, United States - NAG2 archaeon OSP418 JGI 000156CP-G16 DOE Joint Genome Institute (JGI) 3300019521 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Acidic hot water 44.7225 -110.7014 1326995 1538 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300035897 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.J14 DOE Joint Genome Institute (JGI) 3300035897 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 523035 660 0 0 0 0 SRX8899376 Unrestricted 0.0 single_particle_sort 3300024016 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.H14 DOE Joint Genome Institute (JGI) 3300024016 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 6440431 5777 0 0 1 0 SRX4519613 Unrestricted 0.0 single_particle_sort 3300038002 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .K6 DOE Joint Genome Institute (JGI) 3300038002 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 702844 1009 0 0 0 0 SRX9411528 Unrestricted 0.0 single_particle_sort 3300023802 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.L21 DOE Joint Genome Institute (JGI) 3300023802 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 399642 449 0 0 0 0 SRX4548071 Unrestricted 0.0 single_particle_sort 3300021761 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.I11 DOE Joint Genome Institute (JGI) 3300021761 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 581053 748 0 0 0 0 SRX3990633 Unrestricted 0.0 single_particle_sort 3300014988 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-2.G12 DOE Joint Genome Institute (JGI) 3300014988 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 163523 225 0 0 0 0 Restricted 0.0 single_particle_sort 3300041621 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.I17 DOE Joint Genome Institute (JGI) 3300041621 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 4168753 4228 1 0 1 0 SRX14835417 Unrestricted 0.0 single_particle_sort 3300016253 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-H11 DOE Joint Genome Institute (JGI) 3300016253 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 554315 612 0 0 0 0 SRX3562932 Unrestricted 0.0 single_particle_sort 3300038102 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .M22 DOE Joint Genome Institute (JGI) 3300038102 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 665786 833 0 0 0 0 SRX9411638 Unrestricted 0.0 single_particle_sort 3300015004 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.M13 DOE Joint Genome Institute (JGI) 3300015004 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 236251 309 0 0 0 0 Restricted 0.0 single_particle_sort 3300016199 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Parcubacteria bacterium SCGC_AG-278-O04 DOE Joint Genome Institute (JGI) 3300016199 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 203705 245 0 0 0 0 SRX3578538 Unrestricted 0.0 single_particle_sort 3300041289 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.1.D16 DOE Joint Genome Institute (JGI) 3300041289 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 36182 33 0 0 0 0 SRX9654851 Unrestricted 0.0 single_particle_sort 3300022268 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Hadesarchaea_archaeum_SCGC_AH-147-B05 Bigelow Laboratory for Ocean Sciences 3300022268 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 475346 563 1 0 1 0 0.0 single_particle_sort 3300033774 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_J3 DOE Joint Genome Institute (JGI) 3300033774 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 9645 13 0 0 0 0 SRX7525369 Unrestricted 0.0 single_particle_sort 3300015991 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Armatimonadetes bacterium SCGC_AG-657-O07 DOE Joint Genome Institute (JGI) 3300015991 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 399991 461 0 0 0 0 SRX3601839 Unrestricted 0.0 single_particle_sort 3300015748 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-H06 DOE Joint Genome Institute (JGI) 3300015748 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 168013 191 0 0 0 0 SRX3551327 Unrestricted 0.0 single_particle_sort 3300016429 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Elusimicrobia_bacterium_SCGC_AG-516-F16 DOE Joint Genome Institute (JGI) 3300016429 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Groundwater -28.24 26.8 8.55 1199625 1167 1 0 1 0 SRX3784177 Unrestricted 0.0 single_particle_sort 3300023579 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.F18 DOE Joint Genome Institute (JGI) 3300023579 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 117167 143 0 0 0 0 SRX4547910 Unrestricted 0.0 single_particle_sort 3300032489 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.J7 DOE Joint Genome Institute (JGI) 3300032489 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 438001 457 1 0 1 0 SRX6451980 Unrestricted 0.0 single_particle_sort 3300021666 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.H6 DOE Joint Genome Institute (JGI) 3300021666 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 189572 217 0 0 0 0 SRX3993600 Unrestricted 0.0 single_particle_sort 3300015104 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-O06 DOE Joint Genome Institute (JGI) 3300015104 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 300680 384 0 0 0 0 SRX3578340 Unrestricted 0.0 single_particle_sort 3300016099 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown archaeum SCGC_AG-657-D08 DOE Joint Genome Institute (JGI) 3300016099 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 485841 576 1 0 1 0 SRX3594356 Unrestricted 0.0 single_particle_sort 3300033209 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.C17 DOE Joint Genome Institute (JGI) 3300033209 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 184377 212 0 0 0 0 SRX7630252 Unrestricted 0.0 single_particle_sort 3300019686 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - Microgenometes bacterium SCGC_AG-290-E10 DOE Joint Genome Institute (JGI) 3300019686 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 639641 680 0 0 1 0 SRX3903175 Unrestricted 0.0 single_particle_sort 3300022094 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.C19 DOE Joint Genome Institute (JGI) 3300022094 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1039660 1164 0 0 0 0 SRX3991266 Unrestricted 0.0 single_particle_sort 3300035712 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_H12 DOE Joint Genome Institute (JGI) 3300035712 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 199567 242 0 0 0 0 SRX10045570 Unrestricted 0.0 single_particle_sort 3300019893 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-M12 DOE Joint Genome Institute (JGI) 3300019893 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 82319 90 0 0 0 0 SRX4663362 Unrestricted 0.0 single_particle_sort 3300015446 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-K11 DOE Joint Genome Institute (JGI) 3300015446 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 121479 150 0 0 0 0 SRX3560338 Unrestricted 0.0 single_particle_sort 3300035798 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.L15 DOE Joint Genome Institute (JGI) 3300035798 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 916969 960 1 0 1 0 SRX8860855 Unrestricted 0.0 single_particle_sort 3300035483 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_C19 DOE Joint Genome Institute (JGI) 3300035483 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 53782 66 0 0 0 0 SRX9540274 Unrestricted 0.0 single_particle_sort 3300035941 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.F22 DOE Joint Genome Institute (JGI) 3300035941 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1353006 1474 0 0 1 0 SRX8862573 Unrestricted 0.0 single_particle_sort 3300041593 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.E15 DOE Joint Genome Institute (JGI) 3300041593 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1141102 1223 1 0 1 0 SRX10044855 Unrestricted 0.0 single_particle_sort 3300041098 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.E10 DOE Joint Genome Institute (JGI) 3300041098 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 627934 692 0 0 0 0 SRX9654312 Unrestricted 0.0 single_particle_sort 3300019693 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG_AG-578-E15 DOE Joint Genome Institute (JGI) 3300019693 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 812107 883 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300041112 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.G17 DOE Joint Genome Institute (JGI) 3300041112 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 640544 755 0 0 0 0 SRX9654445 Unrestricted 0.0 single_particle_sort 3300015473 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-N15 DOE Joint Genome Institute (JGI) 3300015473 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 188122 221 0 0 3 0 SRX3550867 Unrestricted 0.0 single_particle_sort 3300041198 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.C18 DOE Joint Genome Institute (JGI) 3300041198 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2150373 2105 1 0 0 0 SRX9656235 Unrestricted 0.0 single_particle_sort 3300024105 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.C9 DOE Joint Genome Institute (JGI) 3300024105 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1751579 1916 1 0 2 0 SRX4519501 Unrestricted 0.0 single_particle_sort 3300010821 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_21_SCGC_AG-138-I17 DOE Joint Genome Institute (JGI) 3300010821 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 527479 620 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300016288 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-3-G18 DOE Joint Genome Institute (JGI) 3300016288 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 666708 731 0 0 0 0 SRX3553121 Unrestricted 0.0 single_particle_sort 3300035851 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.F8 DOE Joint Genome Institute (JGI) 3300035851 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 869313 1001 0 0 0 0 SRX8896951 Unrestricted 0.0 single_particle_sort 3300019387 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent microbial mat, Guaymas Basin, Mexico - 6AL_4869_21_21 DOE Joint Genome Institute (JGI) 3300019387 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.001 -110.5998 324170 345 0 0 0 0 SRX3974428 Unrestricted 0.0 single_particle_sort 3300041264 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.2.L5 DOE Joint Genome Institute (JGI) 3300041264 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 807631 924 0 0 0 0 SRX9666476 Unrestricted 0.0 single_particle_sort 3300036049 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_J20 DOE Joint Genome Institute (JGI) 3300036049 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 241951 302 0 0 0 0 SRX10045844 Unrestricted 0.0 single_particle_sort 3300019978 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-E15 DOE Joint Genome Institute (JGI) 3300019978 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 610784 724 1 0 1 0 SRX4654088 Unrestricted 0.0 single_particle_sort 3300015847 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-G13 DOE Joint Genome Institute (JGI) 3300015847 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 106692 131 1 0 1 0 SRX3540189 Unrestricted 0.0 single_particle_sort 3300038055 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.J20 DOE Joint Genome Institute (JGI) 3300038055 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 109790 132 0 0 0 0 SRX9411377 Unrestricted 0.0 single_particle_sort 3300035756 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.K18 DOE Joint Genome Institute (JGI) 3300035756 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 758722 767 0 0 0 0 SRX8900260 Unrestricted 0.0 single_particle_sort 3300010726 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_30_SCGC_AG-159-K06 DOE Joint Genome Institute (JGI) 3300010726 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 69334 87 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023945 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.K6 DOE Joint Genome Institute (JGI) 3300023945 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1217198 1241 1 0 1 0 SRX4523197 Unrestricted 0.0 single_particle_sort 3300023655 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.H16 DOE Joint Genome Institute (JGI) 3300023655 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 426898 428 1 0 1 0 SRX4548011 Unrestricted 0.0 single_particle_sort 3300015647 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - DC4.5.2015 0309 DC4 p5 16S.H13.double-peak DOE Joint Genome Institute (JGI) 3300015647 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 566126 724 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300016329 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Saccharibacteria bacterium SCGC_AG-574-P02 DOE Joint Genome Institute (JGI) 3300016329 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 712346 792 1 0 1 0 SRX3579056 Unrestricted 0.0 single_particle_sort 3300041156 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.I15 DOE Joint Genome Institute (JGI) 3300041156 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1410734 1507 0 0 0 0 SRX9674965 Unrestricted 0.0 single_particle_sort 3300015957 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_K20 DOE Joint Genome Institute (JGI) 3300015957 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 387646 418 1 0 0 0 SRX4066764 Unrestricted 0.0 single_particle_sort 3300024380 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Pseudomonas bacterium JGI PFNR15_J22 DOE Joint Genome Institute (JGI) 3300024380 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 67973 91 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300014477 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.J10 DOE Joint Genome Institute (JGI) 3300014477 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1493889 1739 2 0 1 0 SRX3366647 Unrestricted 0.0 single_particle_sort 3300021782 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.G7 DOE Joint Genome Institute (JGI) 3300021782 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 1306986 1375 0 0 0 0 SRX4009935 Unrestricted 0.0 single_particle_sort 3300024722 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-F15 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024722 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 133435 141 2 0 1 0 0.0 single_particle_sort 3300023855 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.N17 DOE Joint Genome Institute (JGI) 3300023855 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 603011 697 0 0 0 0 SRX4525361 Unrestricted 0.0 single_particle_sort 3300035879 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.D18 DOE Joint Genome Institute (JGI) 3300035879 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1113537 1170 1 0 1 0 SRX8857307 Unrestricted 0.0 single_particle_sort 3300038229 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.F19 DOE Joint Genome Institute (JGI) 3300038229 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 424493 532 0 0 0 0 SRX9411074 Unrestricted 0.0 single_particle_sort 3300024637 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-P06 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024637 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 64385 72 0 0 0 0 0.0 single_particle_sort 3300033705 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_N20 DOE Joint Genome Institute (JGI) 3300033705 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 17996 25 0 0 0 0 SRX7529069 Unrestricted 0.0 single_particle_sort 3300015889 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Ash Meadows Big Spring, Nevada, USA - unknown_bacterium_SCGC_AG-297-K17 DOE Joint Genome Institute (JGI) 3300015889 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Groundwater 36.42 -116.36 7.72 268554 299 0 0 0 0 SRX3781590 Unrestricted 0.0 single_particle_sort 3300050792 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_H20_SVS DOE Joint Genome Institute (JGI) 3300050792 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 35671 50 0 0 0 0 Restricted 0.0 single_particle_sort 3300019625 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-3-D04 DOE Joint Genome Institute (JGI) 3300019625 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 65721 99 0 0 1 0 SRX3551368 Unrestricted 0.0 single_particle_sort 3300024403 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.I15 DOE Joint Genome Institute (JGI) 3300024403 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 650727 683 0 0 0 0 SRX4547822 Unrestricted 0.0 single_particle_sort 3300032347 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.K9 DOE Joint Genome Institute (JGI) 3300032347 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 330892 396 0 0 0 0 SRX6433373 Unrestricted 0.0 single_particle_sort 3300024837 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-K17 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024837 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 9162 7 0 0 0 0 0.0 single_particle_sort 3300024665 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-G16 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024665 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 75413 94 0 0 0 0 0.0 single_particle_sort 3300023597 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.H13 DOE Joint Genome Institute (JGI) 3300023597 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 546085 605 0 0 1 0 SRX4415564 Unrestricted 0.0 single_particle_sort 3300050863 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_A4_SVS DOE Joint Genome Institute (JGI) 3300050863 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 42439 65 0 0 0 0 Restricted 0.0 single_particle_sort 3300041332 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.L19 DOE Joint Genome Institute (JGI) 3300041332 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 3045103 2981 1 0 1 0 SRX9646879 Unrestricted 0.0 single_particle_sort 3300016177 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-H17 DOE Joint Genome Institute (JGI) 3300016177 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 548516 704 0 0 0 0 SRX3540530 Unrestricted 0.0 single_particle_sort 3300014399 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.L21 DOE Joint Genome Institute (JGI) 3300014399 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 371627 486 0 0 0 0 SRX3367895 Unrestricted 0.0 single_particle_sort 3300036087 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_J16 DOE Joint Genome Institute (JGI) 3300036087 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 19967 30 0 0 0 0 SRX10046433 Unrestricted 0.0 single_particle_sort 3300019630 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_K11 DOE Joint Genome Institute (JGI) 3300019630 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 88765 109 0 0 0 0 SRX4646901 Unrestricted 0.0 single_particle_sort 3300033492 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.F10 DOE Joint Genome Institute (JGI) 3300033492 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 1032431 890 0 0 0 0 SRX7630344 Unrestricted 0.0 single_particle_sort 3300049949 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_H22_SVS DOE Joint Genome Institute (JGI) 3300049949 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 92248 131 0 0 0 0 Restricted 0.0 single_particle_sort 3300015221 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - Parcubacteria bacterium SCGC_AG-290-F06 DOE Joint Genome Institute (JGI) 3300015221 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 390467 500 1 0 0 0 SRX3578551 Unrestricted 0.0 single_particle_sort 3300036610 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.I9 DOE Joint Genome Institute (JGI) 3300036610 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 1928302 2297 1 0 1 0 SRX8902558 Unrestricted 0.0 single_particle_sort 3300018378 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_I16 DOE Joint Genome Institute (JGI) 3300018378 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 2116886 2004 2 0 2 0 SRX4649711 Unrestricted 0.0 single_particle_sort 3300016077 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-P13 DOE Joint Genome Institute (JGI) 3300016077 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 492401 557 0 0 0 0 SRX3580368 Unrestricted 0.0 single_particle_sort 3300019830 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-J15 DOE Joint Genome Institute (JGI) 3300019830 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 316361 371 0 0 0 0 SRX4663323 Unrestricted 0.0 single_particle_sort 3300033716 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P1_M8 DOE Joint Genome Institute (JGI) 3300033716 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 11243 15 0 0 0 0 SRX7525399 Unrestricted 0.0 single_particle_sort 3300010785 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_39_SCGC_AG-159-N15 DOE Joint Genome Institute (JGI) 3300010785 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 388800 388 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300023162 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.L4 DOE Joint Genome Institute (JGI) 3300023162 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 2007071 2091 1 0 1 0 SRX4509170 Unrestricted 0.0 single_particle_sort 3300050180 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_K9_SVS DOE Joint Genome Institute (JGI) 3300050180 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 49435 81 0 0 0 0 Restricted 0.0 single_particle_sort 3300024738 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-M14 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024738 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 115537 160 0 0 0 0 0.0 single_particle_sort 3300022639 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Sphingobacteriales bacterium JGI PCGPRD042217_19 DOE Joint Genome Institute (JGI) 3300022639 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 1672762 1716 1 0 0 0 SRX4415192 Unrestricted 0.0 single_particle_sort 3300041247 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.H19 DOE Joint Genome Institute (JGI) 3300041247 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2476815 2420 0 0 1 0 SRX9651531 Unrestricted 0.0 single_particle_sort 3300016541 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from underground thermal water from 5P borehole, Tomsk, Russia - Microgenometes_bacterium_SCGC_AG-717-N18 DOE Joint Genome Institute (JGI) 3300016541 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole Groundwater 58.0758 82.8374 7.49-7.6 727982 839 1 0 1 0 SRX3782171 Unrestricted 0.0 single_particle_sort 3300050817 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_P2_SVS DOE Joint Genome Institute (JGI) 3300050817 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 59196 79 0 0 0 0 Restricted 0.0 single_particle_sort 3300016634 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Caldithrix_bacterium_SCGC_AG-636-N09 DOE Joint Genome Institute (JGI) 3300016634 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Sediment Freshwater Unclassified Freshwater sediment 53.7598 107.9791 7.32 4579441 3742 1 0 1 0 SRX3784360 Unrestricted 0.0 single_particle_sort 3300032673 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.F10 DOE Joint Genome Institute (JGI) 3300032673 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 301155 369 0 0 0 0 SRX6427194 Unrestricted 0.0 single_particle_sort 3300033590 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_E2 DOE Joint Genome Institute (JGI) 3300033590 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 23638 31 0 0 0 0 SRX7525352 Unrestricted 0.0 single_particle_sort 3300033611 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_N3 DOE Joint Genome Institute (JGI) 3300033611 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 20827 26 0 0 0 0 SRX7528829 Unrestricted 0.0 single_particle_sort 3300036623 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.J13 DOE Joint Genome Institute (JGI) 3300036623 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 1010744 1166 0 0 0 0 SRX8902866 Unrestricted 0.0 single_particle_sort 3300015864 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_D13 DOE Joint Genome Institute (JGI) 3300015864 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 190358 219 0 0 0 0 SRX4065501 Unrestricted 0.0 single_particle_sort 3300024074 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.K11 DOE Joint Genome Institute (JGI) 3300024074 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 566903 545 1 0 1 0 SRX4501149 Unrestricted 0.0 single_particle_sort 3300037931 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.F14 DOE Joint Genome Institute (JGI) 3300037931 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 742025 845 1 0 1 0 SRX9410435 Unrestricted 0.0 single_particle_sort 3300023934 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.L17 DOE Joint Genome Institute (JGI) 3300023934 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 1232084 1175 1 0 1 0 SRX4523744 Unrestricted 0.0 single_particle_sort 3300032646 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.D9 DOE Joint Genome Institute (JGI) 3300032646 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 343115 381 0 0 0 0 SRX6431294 Unrestricted 0.0 single_particle_sort 3300033318 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.N8 DOE Joint Genome Institute (JGI) 3300033318 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 474509 542 2 0 0 0 SRX7630525 Unrestricted 0.0 single_particle_sort 3300034625 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.2.L10 DOE Joint Genome Institute (JGI) 3300034625 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 2673217 2777 1 0 1 0 SRX8390535 Unrestricted 0.0 single_particle_sort 3300015664 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from a deep sea mud volcano in Anaximander Mountains, Eastern Mediterranean Sea - B25.1.2014 1113 MDM2 B25 p1 16S.M14.double-seq DOE Joint Genome Institute (JGI) 3300015664 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Mud volcano Marine Unclassified Deep sea volcano 35.3338 30.2722 1183572 1135 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300019449 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent sediment, Guaymas Basin, Mexico - 6R_4868_13_15 DOE Joint Genome Institute (JGI) 3300019449 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.001 -110.5999 12725759 12131 1 0 1 0 SRX3974128 Unrestricted 0.0 single_particle_sort 3300021106 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted archaeal cell/s from hot spring water in Nymph Lake, Yellowstone National Park, Wyoming, USA - Nanoarchaeota archaeon AD-903-N05 Oregon State University 3300021106 Metagenome - Single Particle Sort Spades v2.2.1 Manuscript to be submitted soon No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring water 44.75187 -110.7288 214087 274 0 0 0 0 0.0 single_particle_sort 3300015619 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from a deep sea mud volcano in Anaximander Mountains, Eastern Mediterranean Sea - B17.1.2014-1113 MDM2 B17 p1 16S.C20.double-seq DOE Joint Genome Institute (JGI) 3300015619 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Mud volcano Marine Unclassified Deep sea volcano 35.7369 30.475 83480 94 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300023970 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.G20 DOE Joint Genome Institute (JGI) 3300023970 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 1484887 1666 0 0 0 0 SRX4549615 Unrestricted 0.0 single_particle_sort 3300015394 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Omnitrophica bacterium SCGC_AG-128-I15 DOE Joint Genome Institute (JGI) 3300015394 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 716354 761 0 0 0 0 SRX3577013 Unrestricted 0.0 single_particle_sort 3300033662 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P2_G8 DOE Joint Genome Institute (JGI) 3300033662 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 8457 10 0 0 0 0 SRX7530073 Unrestricted 0.0 single_particle_sort 3300016309 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-M07 DOE Joint Genome Institute (JGI) 3300016309 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 668623 761 0 0 1 0 SRX3563039 Unrestricted 0.0 single_particle_sort 3300015819 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-I18 DOE Joint Genome Institute (JGI) 3300015819 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 263039 308 1 0 1 0 SRX3560702 Unrestricted 0.0 single_particle_sort 3300050788 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_G15_SVS DOE Joint Genome Institute (JGI) 3300050788 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 77027 102 0 0 0 0 Restricted 0.0 single_particle_sort 3300015754 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-L20 DOE Joint Genome Institute (JGI) 3300015754 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 149260 198 0 0 0 0 SRX3560737 Unrestricted 0.0 single_particle_sort 3300018442 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_K19 DOE Joint Genome Institute (JGI) 3300018442 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 768747 740 1 0 0 0 SRX4651080 Unrestricted 0.0 single_particle_sort 3300033862 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.G7 DOE Joint Genome Institute (JGI) 3300033862 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 473296 589 0 0 0 0 SRX7626219 Unrestricted 0.0 single_particle_sort 3300024702 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-C10 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024702 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 93523 128 0 0 0 0 0.0 single_particle_sort 3300010733 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.04.M15 DOE Joint Genome Institute (JGI) 3300010733 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 79251 111 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300021679 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.H17 DOE Joint Genome Institute (JGI) 3300021679 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 226068 278 0 0 0 0 SRX4009710 Unrestricted 0.0 single_particle_sort 3300018265 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Lentisphaerae_bacterium_SCGC_AG-650-F13 DOE Joint Genome Institute (JGI) 3300018265 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 862325 847 0 0 0 0 SRX3979494 Unrestricted 0.0 single_particle_sort 3300033793 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P1_F15 DOE Joint Genome Institute (JGI) 3300033793 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 7046 6 0 0 0 0 SRX7525331 Unrestricted 0.0 single_particle_sort 3300036017 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.C18 DOE Joint Genome Institute (JGI) 3300036017 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 639262 707 0 0 0 0 SRX8857821 Unrestricted 0.0 single_particle_sort 3300010801 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.N12 DOE Joint Genome Institute (JGI) 3300010801 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 402779 466 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023011 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - S2R-29 bacterium JGI MDM2 DC4-3-J6 DOE Joint Genome Institute (JGI) 3300023011 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 1765439 1653 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300024125 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Burkholderia bacterium JGI PFNR15_M7 DOE Joint Genome Institute (JGI) 3300024125 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 25476 30 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300018237 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_K22 DOE Joint Genome Institute (JGI) 3300018237 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 568900 641 1 0 0 0 SRX4652746 Unrestricted 0.0 single_particle_sort 3300033353 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.J6 DOE Joint Genome Institute (JGI) 3300033353 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 1232152 1181 0 0 0 0 SRX7630494 Unrestricted 0.0 single_particle_sort 3300018342 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_D13 DOE Joint Genome Institute (JGI) 3300018342 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1598974 1507 0 0 0 0 SRX4649710 Unrestricted 0.0 single_particle_sort 3300033786 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P3_J17 DOE Joint Genome Institute (JGI) 3300033786 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 32520 55 0 0 0 0 SRX7531073 Unrestricted 0.0 single_particle_sort 3300010715 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.L22 DOE Joint Genome Institute (JGI) 3300010715 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 33703 40 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300013504 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.H18 DOE Joint Genome Institute (JGI) 3300013504 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1143916 1392 1 0 0 0 SRX3367091 Unrestricted 0.0 single_particle_sort 3300016409 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG-574-O15 DOE Joint Genome Institute (JGI) 3300016409 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 978712 1048 1 0 1 0 SRX3579053 Unrestricted 0.0 single_particle_sort 3300015124 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - unknown bacterium SCGC_AG-290-L06 DOE Joint Genome Institute (JGI) 3300015124 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 425600 526 0 0 0 0 SRX3578738 Unrestricted 0.0 single_particle_sort 3300033229 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.C22 DOE Joint Genome Institute (JGI) 3300033229 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 266978 341 0 0 1 0 SRX7630263 Unrestricted 0.0 single_particle_sort 3300036063 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_H7 DOE Joint Genome Institute (JGI) 3300036063 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 178933 219 0 0 1 0 SRX10045974 Unrestricted 0.0 single_particle_sort 3300015494 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-E10 DOE Joint Genome Institute (JGI) 3300015494 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 241604 310 0 0 0 0 SRX3549155 Unrestricted 0.0 single_particle_sort 3300050753 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_B5_SVS DOE Joint Genome Institute (JGI) 3300050753 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 124317 167 0 0 0 0 Restricted 0.0 single_particle_sort 3300019674 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG_AG-578-M02 DOE Joint Genome Institute (JGI) 3300019674 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 256984 291 1 0 0 0 SRX3903185 Unrestricted 0.0 single_particle_sort 3300050887 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_F18_SVS DOE Joint Genome Institute (JGI) 3300050887 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 36870 59 0 0 0 0 Restricted 0.0 single_particle_sort 3300041308 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.I5 DOE Joint Genome Institute (JGI) 3300041308 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1044937 1040 0 0 0 0 SRX9646394 Unrestricted 0.0 single_particle_sort 3300033453 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.M8 DOE Joint Genome Institute (JGI) 3300033453 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 150179 174 0 0 0 0 SRX7630355 Unrestricted 0.0 single_particle_sort 3300024395 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Luteibacter bacterium JGI PFNR15_C4 DOE Joint Genome Institute (JGI) 3300024395 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 373921 419 2 0 1 0 Unrestricted 0.0 single_particle_sort 3300019501 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Thioalkalivibrio sp. HL7711_P3F6 JGI 000155CP-C18 DOE Joint Genome Institute (JGI) 3300019501 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 564206 602 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300023622 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.K12 DOE Joint Genome Institute (JGI) 3300023622 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 1182611 1427 1 0 1 0 SRX4547987 Unrestricted 0.0 single_particle_sort 3300033681 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P9_L21 DOE Joint Genome Institute (JGI) 3300033681 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 21102 19 0 0 0 0 SRX7531294 Unrestricted 0.0 single_particle_sort 3300038022 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.H10 DOE Joint Genome Institute (JGI) 3300038022 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 821271 1065 0 0 1 0 SRX9411113 Unrestricted 0.0 single_particle_sort 3300050971 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_B11_SVS DOE Joint Genome Institute (JGI) 3300050971 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 99828 101 0 0 0 0 Restricted 0.0 single_particle_sort 3300024755 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-B20 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024755 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 117780 171 0 0 0 0 0.0 single_particle_sort 3300023822 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.C17 DOE Joint Genome Institute (JGI) 3300023822 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 494494 536 1 0 0 0 SRX4525362 Unrestricted 0.0 single_particle_sort 3300033881 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.N21 DOE Joint Genome Institute (JGI) 3300033881 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 142703 187 0 0 0 0 SRX7626823 Unrestricted 0.0 single_particle_sort 3300041601 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.C11 DOE Joint Genome Institute (JGI) 3300041601 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 928964 992 1 0 1 0 SRX14830211 Unrestricted 0.0 single_particle_sort 3300038122 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.G21 DOE Joint Genome Institute (JGI) 3300038122 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 1424613 1430 0 0 0 0 SRX9411740 Unrestricted 0.0 single_particle_sort 3300019417 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16025 DOE Joint Genome Institute (JGI) 3300019417 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 1919189 2153 1 0 1 0 SRX3985682 Unrestricted 0.0 single_particle_sort 3300024086 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.N9 DOE Joint Genome Institute (JGI) 3300024086 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 1044564 1086 1 0 1 0 SRX4524102 Unrestricted 0.0 single_particle_sort 3300036603 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.G7 DOE Joint Genome Institute (JGI) 3300036603 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 1183939 1387 0 0 0 0 SRX8902164 Unrestricted 0.0 single_particle_sort 3300036731 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.H8.redo DOE Joint Genome Institute (JGI) 3300036731 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 709053 818 0 0 0 0 SRX8905635 Unrestricted 0.0 single_particle_sort 3300034605 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.J8 DOE Joint Genome Institute (JGI) 3300034605 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1023651 1070 1 0 1 0 SRX8394723 Unrestricted 0.0 single_particle_sort 3300014992 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-2.K21 DOE Joint Genome Institute (JGI) 3300014992 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 183397 242 1 0 1 0 Restricted 0.0 single_particle_sort 3300023737 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR46.Redo.05.E17 DOE Joint Genome Institute (JGI) 3300023737 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.242 21.4899 73863 96 0 0 0 0 SRX4391263 Unrestricted 0.0 single_particle_sort 3300022257 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Hadesarchaea_archaeum_SCGC_AH-147-N16 Bigelow Laboratory for Ocean Sciences 3300022257 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 237807 300 1 0 1 0 0.0 single_particle_sort 3300034463 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.F20 DOE Joint Genome Institute (JGI) 3300034463 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 443796 486 0 0 0 0 SRX8389556 Unrestricted 0.0 single_particle_sort 3300041350 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.J18 DOE Joint Genome Institute (JGI) 3300041350 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 950295 995 0 0 0 0 SRX9647031 Unrestricted 0.0 single_particle_sort 3300035866 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.I17 DOE Joint Genome Institute (JGI) 3300035866 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 1033054 1091 0 0 1 0 SRX8856769 Unrestricted 0.0 single_particle_sort 3300019942 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-G6 DOE Joint Genome Institute (JGI) 3300019942 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 58725 72 0 0 0 0 SRX4655808 Unrestricted 0.0 single_particle_sort 3300019652 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-K23 DOE Joint Genome Institute (JGI) 3300019652 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 175424 176 0 0 0 0 SRX3974844 Unrestricted 0.0 single_particle_sort 3300021697 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.M14 DOE Joint Genome Institute (JGI) 3300021697 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 310584 344 0 0 0 0 SRX4009664 Unrestricted 0.0 single_particle_sort 3300041219 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.G7 DOE Joint Genome Institute (JGI) 3300041219 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1907918 2058 1 0 1 0 SRX9652978 Unrestricted 0.0 single_particle_sort 3300024410 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.N14 DOE Joint Genome Institute (JGI) 3300024410 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 2189201 2136 1 0 1 0 SRX4547837 Unrestricted 0.0 single_particle_sort 3300019816 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-J9 DOE Joint Genome Institute (JGI) 3300019816 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 1593255 1672 0 0 0 0 SRX4663341 Unrestricted 0.0 single_particle_sort 3300035761 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.L20 DOE Joint Genome Institute (JGI) 3300035761 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 527567 600 0 0 1 0 SRX8901080 Unrestricted 0.0 single_particle_sort 3300036636 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.H19 DOE Joint Genome Institute (JGI) 3300036636 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 1092676 1334 0 0 0 0 SRX8903143 Unrestricted 0.0 single_particle_sort 3300050849 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_K20_SVS DOE Joint Genome Institute (JGI) 3300050849 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 48859 81 0 0 0 0 Restricted 0.0 single_particle_sort 3300049963 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_K3_SVS DOE Joint Genome Institute (JGI) 3300049963 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 58240 65 0 0 0 0 Restricted 0.0 single_particle_sort 3300019616 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-D08 DOE Joint Genome Institute (JGI) 3300019616 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 78589 90 0 0 0 0 SRX3903188 Unrestricted 0.0 single_particle_sort 3300035467 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_E14 DOE Joint Genome Institute (JGI) 3300035467 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 96725 115 0 0 0 0 SRX9539785 Unrestricted 0.0 single_particle_sort 3300050959 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_E14_SVS DOE Joint Genome Institute (JGI) 3300050959 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 158278 220 0 0 0 0 Restricted 0.0 single_particle_sort 3300041161 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.M14 DOE Joint Genome Institute (JGI) 3300041161 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1673811 1829 0 0 0 0 SRX9677233 Unrestricted 0.0 single_particle_sort 3300035782 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.H11 DOE Joint Genome Institute (JGI) 3300035782 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 750473 804 1 0 1 0 SRX8858256 Unrestricted 0.0 single_particle_sort 3300015968 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_L15 DOE Joint Genome Institute (JGI) 3300015968 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 399353 435 1 0 2 0 SRX4065851 Unrestricted 0.0 single_particle_sort 3300038038 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.05.I20 DOE Joint Genome Institute (JGI) 3300038038 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 55923 84 0 0 0 0 SRX9411220 Unrestricted 0.0 single_particle_sort 3300023638 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.L8 DOE Joint Genome Institute (JGI) 3300023638 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 108973 136 0 0 0 0 SRX4547989 Unrestricted 0.0 single_particle_sort 3300041182 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.D11 DOE Joint Genome Institute (JGI) 3300041182 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2745031 2684 0 0 0 0 SRX9523933 Unrestricted 0.0 single_particle_sort 3300015772 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-L09 DOE Joint Genome Institute (JGI) 3300015772 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 172748 226 0 0 0 0 SRX3560805 Unrestricted 0.0 single_particle_sort 3300038138 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.F11 DOE Joint Genome Institute (JGI) 3300038138 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 1049951 1187 1 0 1 0 SRX9411762 Unrestricted 0.0 single_particle_sort 3300016218 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-574-E19 DOE Joint Genome Institute (JGI) 3300016218 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 357248 407 1 0 0 0 SRX3578823 Unrestricted 0.0 single_particle_sort 3300016292 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG_AG-578-D14 DOE Joint Genome Institute (JGI) 3300016292 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 585942 744 1 0 0 0 SRX3579192 Unrestricted 0.0 single_particle_sort 3300023838 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.E17 DOE Joint Genome Institute (JGI) 3300023838 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 620516 628 0 0 0 0 SRX4525772 Unrestricted 0.0 single_particle_sort 3300034616 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.J6 DOE Joint Genome Institute (JGI) 3300034616 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1267094 1341 0 0 0 0 SRX8394786 Unrestricted 0.0 single_particle_sort 3300010790 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_31_SCGC_AG-159-K15 DOE Joint Genome Institute (JGI) 3300010790 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 356009 399 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300023331 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.F13 DOE Joint Genome Institute (JGI) 3300023331 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 690700 734 1 0 1 0 SRX4520318 Unrestricted 0.0 single_particle_sort 3300021756 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.L5 DOE Joint Genome Institute (JGI) 3300021756 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 899102 1069 0 0 0 0 SRX4009923 Unrestricted 0.0 single_particle_sort 3300019805 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-I8 DOE Joint Genome Institute (JGI) 3300019805 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 451039 474 0 0 0 0 SRX4663327 Unrestricted 0.0 single_particle_sort 3300015040 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.D8 DOE Joint Genome Institute (JGI) 3300015040 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 454100 540 0 0 0 0 Restricted 0.0 single_particle_sort 3300024093 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.I10 DOE Joint Genome Institute (JGI) 3300024093 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 1180262 1297 1 0 1 0 SRX4523975 Unrestricted 0.0 single_particle_sort 3300024598 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-O06 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024598 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 34249 44 0 0 0 0 0.0 single_particle_sort 3300032694 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.D13 DOE Joint Genome Institute (JGI) 3300032694 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 691626 706 1 0 1 0 SRX6452408 Unrestricted 0.0 single_particle_sort 3300038209 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.H20 DOE Joint Genome Institute (JGI) 3300038209 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 774083 900 1 0 1 0 SRX9411031 Unrestricted 0.0 single_particle_sort 3300019463 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-2.M19 DOE Joint Genome Institute (JGI) 3300019463 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 32898 52 1 0 0 0 Restricted 0.0 single_particle_sort 3300024193 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Pseudomonas bacterium JGI PFNR15_M20 DOE Joint Genome Institute (JGI) 3300024193 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 120522 134 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300015140 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - unknown bacterium SCGC_AG-290-N09 DOE Joint Genome Institute (JGI) 3300015140 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 602234 641 0 0 0 0 SRX3578748 Unrestricted 0.0 single_particle_sort 3300019605 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - BRC1 bacterium SCGC_AG-657-B07 DOE Joint Genome Institute (JGI) 3300019605 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 57255 78 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033585 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P3_F18 DOE Joint Genome Institute (JGI) 3300033585 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 33389 34 0 0 0 0 SRX7530959 Unrestricted 0.0 single_particle_sort 3300021798 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.J8 DOE Joint Genome Institute (JGI) 3300021798 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 429541 496 0 0 0 0 SRX3989951 Unrestricted 0.0 single_particle_sort 3300034711 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.1.L21 DOE Joint Genome Institute (JGI) 3300034711 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 1110655 1195 1 0 1 0 SRX8390474 Unrestricted 0.0 single_particle_sort 3300021712 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.L7 DOE Joint Genome Institute (JGI) 3300021712 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 427447 511 0 0 0 0 SRX4009599 Unrestricted 0.0 single_particle_sort 3300021651 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.L22 DOE Joint Genome Institute (JGI) 3300021651 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 80320 129 0 0 0 0 SRX4009024 Unrestricted 0.0 single_particle_sort 3300041278 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.L14 DOE Joint Genome Institute (JGI) 3300041278 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1043039 1048 0 0 1 0 SRX9653770 Unrestricted 0.0 single_particle_sort 3300036098 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_N18 DOE Joint Genome Institute (JGI) 3300036098 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 147234 170 0 0 0 0 SRX10046544 Unrestricted 0.0 single_particle_sort 3300036012 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.H13 DOE Joint Genome Institute (JGI) 3300036012 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 636028 707 0 0 0 0 SRX8857815 Unrestricted 0.0 single_particle_sort 3300041149 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.M7 DOE Joint Genome Institute (JGI) 3300041149 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1795615 1703 0 0 0 0 SRX9654198 Unrestricted 0.0 single_particle_sort 3300035914 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_E11 DOE Joint Genome Institute (JGI) 3300035914 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 374972 465 0 0 0 0 SRX10045482 Unrestricted 0.0 single_particle_sort 3300023588 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.F6 DOE Joint Genome Institute (JGI) 3300023588 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 279208 326 0 0 0 0 SRX4415633 Unrestricted 0.0 single_particle_sort 3300015223 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - Parcubacteria bacterium SCGC_AG-290-B08 DOE Joint Genome Institute (JGI) 3300015223 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 480037 531 1 0 0 0 SRX3578544 Unrestricted 0.0 single_particle_sort 3300032478 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.I5 DOE Joint Genome Institute (JGI) 3300032478 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 591024 624 0 0 0 0 SRX6429430 Unrestricted 0.0 single_particle_sort 3300018232 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_J20 DOE Joint Genome Institute (JGI) 3300018232 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 853894 765 1 0 1 0 SRX4646707 Unrestricted 0.0 single_particle_sort 3300033466 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.K8 DOE Joint Genome Institute (JGI) 3300033466 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 1537677 1468 0 0 0 0 SRX7630314 Unrestricted 0.0 single_particle_sort 3300023728 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.D5 DOE Joint Genome Institute (JGI) 3300023728 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 40534 41 1 0 1 0 SRX4549234 Unrestricted 0.0 single_particle_sort 3300034595 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.F11 DOE Joint Genome Institute (JGI) 3300034595 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 536030 562 0 0 0 0 SRX8394686 Unrestricted 0.0 single_particle_sort 3300035749 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.D20 DOE Joint Genome Institute (JGI) 3300035749 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 382684 425 0 0 0 0 SRX8857588 Unrestricted 0.0 single_particle_sort 3300050861 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_A11_SVS DOE Joint Genome Institute (JGI) 3300050861 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 43992 61 0 0 0 0 Restricted 0.0 single_particle_sort 3300023326 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.L14 DOE Joint Genome Institute (JGI) 3300023326 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 502900 482 0 0 0 0 SRX4548975 Unrestricted 0.0 single_particle_sort 3300036056 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_L22 DOE Joint Genome Institute (JGI) 3300036056 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 83236 123 0 0 0 0 SRX10045892 Unrestricted 0.0 single_particle_sort 3300033667 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P3_D23 DOE Joint Genome Institute (JGI) 3300033667 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 10953 15 0 0 0 0 SRX7530933 Unrestricted 0.0 single_particle_sort 3300033835 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.L20 DOE Joint Genome Institute (JGI) 3300033835 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 889084 951 0 0 0 0 SRX7630453 Unrestricted 0.0 single_particle_sort 3300024401 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Luteibacter bacterium JGI PFNR15_H6 DOE Joint Genome Institute (JGI) 3300024401 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 411061 481 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300071318 *Microbiome Permanent Draft Comparing whole genome amplification chemistries for bacterial single cell genomics Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - scBac_WGAX_EnviBac_sc_well4H_S96 Stanford University 3300071318 Metagenome - Single Particle Sort Spades v. 3.15.3 released per request -- IMGSUPP-4358 No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 355321 413 0 0 0 0 0.0 single_particle_sort 3300013039 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - DC4.3.2014 1216 MDM DC4 p3 16S.F15.double-seq DOE Joint Genome Institute (JGI) 3300013039 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 991050 1051 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300050766 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_N19_SVS DOE Joint Genome Institute (JGI) 3300050766 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 49856 80 0 0 0 0 Restricted 0.0 single_particle_sort 3300021984 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from iron-sulfur acid spring sediment in Paint Pots, Banff, British Columbia, Canada - GAL15 bacterium JGI MDM2 PDUP-3-K19 DOE Joint Genome Institute (JGI) 3300021984 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Acidic Artesian spring Sediment hot spring sediment 51.1699 -116.1578 131675 156 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300018447 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_M17 DOE Joint Genome Institute (JGI) 3300018447 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 192498 226 1 0 0 0 SRX4651082 Unrestricted 0.0 single_particle_sort 3300033867 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.L8 DOE Joint Genome Institute (JGI) 3300033867 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 313017 355 0 0 0 0 SRX7626220 Unrestricted 0.0 single_particle_sort 3300024707 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-K05 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024707 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 100219 132 0 0 0 0 0.0 single_particle_sort 3300019964 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-D20 DOE Joint Genome Institute (JGI) 3300019964 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 358207 410 0 0 1 0 SRX4653821 Unrestricted 0.0 single_particle_sort 3300022980 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.G16 DOE Joint Genome Institute (JGI) 3300022980 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 696145 829 0 0 0 0 SRX4416935 Unrestricted 0.0 single_particle_sort 3300015459 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-E11 DOE Joint Genome Institute (JGI) 3300015459 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 113843 172 0 0 0 0 SRX3549917 Unrestricted 0.0 single_particle_sort 3300037915 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.J5 DOE Joint Genome Institute (JGI) 3300037915 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 135063 170 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300019989 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-E19 DOE Joint Genome Institute (JGI) 3300019989 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 809484 845 1 0 0 0 SRX4654314 Unrestricted 0.0 single_particle_sort 3300038027 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.D20 DOE Joint Genome Institute (JGI) 3300038027 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 219148 281 0 0 0 0 SRX9411127 Unrestricted 0.0 single_particle_sort 3300033366 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.G12 DOE Joint Genome Institute (JGI) 3300033366 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 653365 656 1 0 1 0 SRX7627936 Unrestricted 0.0 single_particle_sort 3300023627 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.J7 DOE Joint Genome Institute (JGI) 3300023627 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 1560958 1600 0 0 0 0 SRX4547988 Unrestricted 0.0 single_particle_sort 3300032378 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.F4 DOE Joint Genome Institute (JGI) 3300032378 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 68467 53 0 0 0 0 SRX6449957 Unrestricted 0.0 single_particle_sort 3300023158 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.F17 DOE Joint Genome Institute (JGI) 3300023158 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1702644 1811 2 0 2 0 SRX4510158 Unrestricted 0.0 single_particle_sort 3300036621 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.G12 DOE Joint Genome Institute (JGI) 3300036621 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 835697 906 1 0 1 0 SRX8902822 Unrestricted 0.0 single_particle_sort 3300038127 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.M15 DOE Joint Genome Institute (JGI) 3300038127 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 1534093 1570 0 0 0 0 SRX9411751 Unrestricted 0.0 single_particle_sort 3300037933 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.E5 DOE Joint Genome Institute (JGI) 3300037933 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 334445 459 0 0 0 0 SRX9410426 Unrestricted 0.0 single_particle_sort 3300015925 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-J12 DOE Joint Genome Institute (JGI) 3300015925 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 293112 380 1 0 1 0 SRX3560713 Unrestricted 0.0 single_particle_sort 3300032671 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.L12 DOE Joint Genome Institute (JGI) 3300032671 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 488851 471 0 0 0 0 SRX6452333 Unrestricted 0.0 single_particle_sort 3300023827 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.D19 DOE Joint Genome Institute (JGI) 3300023827 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 487299 564 1 0 1 0 SRX4548017 Unrestricted 0.0 single_particle_sort 3300051140 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_A4_SVS DOE Joint Genome Institute (JGI) 3300051140 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 30350 37 0 0 0 0 Restricted 0.0 single_particle_sort 3300038060 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.K13 DOE Joint Genome Institute (JGI) 3300038060 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 101645 176 0 0 0 0 SRX9411381 Unrestricted 0.0 single_particle_sort 3300018347 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Syntrophaceae_bacterium_SCGC_AG-650-N19 DOE Joint Genome Institute (JGI) 3300018347 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1611480 1512 1 0 1 0 SRX3979904 Unrestricted 0.0 single_particle_sort 3300016543 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-D10 DOE Joint Genome Institute (JGI) 3300016543 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 873280 870 0 0 0 0 SRX3577117 Unrestricted 0.0 single_particle_sort 3300033972 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.E17 DOE Joint Genome Institute (JGI) 3300033972 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 255003 297 0 0 1 0 SRX7630399 Unrestricted 0.0 single_particle_sort 3300016048 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacterium bacterium SCGC_AG-582-I13 DOE Joint Genome Institute (JGI) 3300016048 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 506349 533 0 0 0 0 SRX3580010 Unrestricted 0.0 single_particle_sort 3300015930 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-I10 DOE Joint Genome Institute (JGI) 3300015930 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 294194 384 0 0 0 0 SRX3563715 Unrestricted 0.0 single_particle_sort 3300024608 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-L16 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024608 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 45012 53 0 0 0 0 0.0 single_particle_sort 3300036726 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.F7.redo DOE Joint Genome Institute (JGI) 3300036726 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 803459 917 0 0 0 0 SRX8905223 Unrestricted 0.0 single_particle_sort 3300015799 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-L19 DOE Joint Genome Institute (JGI) 3300015799 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 197120 258 1 0 1 0 SRX3560735 Unrestricted 0.0 single_particle_sort 3300034700 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.1.L10 DOE Joint Genome Institute (JGI) 3300034700 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 1952538 2034 0 0 1 0 SRX8390389 Unrestricted 0.0 single_particle_sort 3300023860 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.D18 DOE Joint Genome Institute (JGI) 3300023860 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 613916 736 1 0 2 0 SRX4525384 Unrestricted 0.0 single_particle_sort 3300016279 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown archaeum SCGC_AG-574-B07 DOE Joint Genome Institute (JGI) 3300016279 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 516219 710 0 0 0 0 SRX3578798 Unrestricted 0.0 single_particle_sort 3300050882 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_E23_SVS DOE Joint Genome Institute (JGI) 3300050882 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 55840 66 0 0 0 0 Restricted 0.0 single_particle_sort 3300037906 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.F10 DOE Joint Genome Institute (JGI) 3300037906 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 886952 1164 0 0 0 0 SRX9410337 Unrestricted 0.0 single_particle_sort 3300016148 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-M11 DOE Joint Genome Institute (JGI) 3300016148 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 607861 653 1 0 1 0 SRX3563930 Unrestricted 0.0 single_particle_sort 3300019595 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-F11 DOE Joint Genome Institute (JGI) 3300019595 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 40459 73 0 0 0 0 SRX3561057 Unrestricted 0.0 single_particle_sort 3300016576 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, USA - Atribacteria_bacterium_SCGC_AG-640-I19 DOE Joint Genome Institute (JGI) 3300016576 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Acidic Artesian spring Sediment Hot spring sediment 34.9956 -98.6889 7.5 1763851 1766 1 0 1 0 SRX3784229 Unrestricted 0.0 single_particle_sort 3300024808 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-K03 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024808 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 199191 259 0 0 0 0 0.0 single_particle_sort 3300023426 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.E12 DOE Joint Genome Institute (JGI) 3300023426 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 2087468 1950 1 0 1 0 SRX4520194 Unrestricted 0.0 single_particle_sort 3300022274 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Hadesarchaea_archaeum_SCGC_AH-147-P16 Bigelow Laboratory for Ocean Sciences 3300022274 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 448527 551 1 0 1 0 0.0 single_particle_sort 3300033768 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_C23 DOE Joint Genome Institute (JGI) 3300033768 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 17383 18 0 0 0 0 SRX7525350 Unrestricted 0.0 single_particle_sort 3300019456 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent sediment, Guaymas Basin, Mexico - 6S_4868_13_24 DOE Joint Genome Institute (JGI) 3300019456 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.001 -110.5999 23301559 25930 7 0 7 0 SRX3974129 Unrestricted 0.0 single_particle_sort 3300021692 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.N6 DOE Joint Genome Institute (JGI) 3300021692 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 282017 361 0 0 0 0 SRX4009928 Unrestricted 0.0 single_particle_sort 3300021618 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.L4 DOE Joint Genome Institute (JGI) 3300021618 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 28114 47 0 0 0 0 SRX4009925 Unrestricted 0.0 single_particle_sort 3300032659 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.D17 DOE Joint Genome Institute (JGI) 3300032659 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 313532 380 0 0 0 0 SRX6431296 Unrestricted 0.0 single_particle_sort 3300034758 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.2.K17 DOE Joint Genome Institute (JGI) 3300034758 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 1945642 2004 1 0 1 0 SRX8390387 Unrestricted 0.0 single_particle_sort 3300015993 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-J10 DOE Joint Genome Institute (JGI) 3300015993 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 358668 462 0 0 0 0 SRX3551340 Unrestricted 0.0 single_particle_sort 3300035462 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_K12 DOE Joint Genome Institute (JGI) 3300035462 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 99245 120 0 0 0 0 SRX9539551 Unrestricted 0.0 single_particle_sort 3300024650 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-C20 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024650 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 66280 87 0 0 0 0 0.0 single_particle_sort 3300018389 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Spirochaetes_bacterium_SCGC_AG-650-L02 DOE Joint Genome Institute (JGI) 3300018389 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1993239 1983 0 0 1 0 SRX3981926 Unrestricted 0.0 single_particle_sort 3300021818 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.J20 DOE Joint Genome Institute (JGI) 3300021818 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 803530 975 1 0 1 0 SRX3989569 Unrestricted 0.0 single_particle_sort 3300016514 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, USA - Armatimonadetes_bacterium_SCGC_AG-640-D06 DOE Joint Genome Institute (JGI) 3300016514 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Acidic Artesian spring Sediment Hot spring sediment 34.9956 -98.6889 7.5 572167 462 0 0 1 0 SRX3784237 Unrestricted 0.0 single_particle_sort 3300035888 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.D12 DOE Joint Genome Institute (JGI) 3300035888 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 594548 744 1 0 1 0 SRX8898051 Unrestricted 0.0 single_particle_sort 3300019412 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16038 DOE Joint Genome Institute (JGI) 3300019412 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 1872071 1975 1 0 1 0 SRX3987080 Unrestricted 0.0 single_particle_sort 3300019498 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Alphaproteobacteria bacterium HL7711_P5A1 JGI 000149CP-E07 DOE Joint Genome Institute (JGI) 3300019498 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 508141 527 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300016251 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-578-K23 DOE Joint Genome Institute (JGI) 3300016251 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 568061 602 1 0 0 0 SRX3579275 Unrestricted 0.0 single_particle_sort 3300041623 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.E11 DOE Joint Genome Institute (JGI) 3300041623 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 3374062 3436 1 0 1 0 SRX14835416 Unrestricted 0.0 single_particle_sort 3300037990 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.E8 DOE Joint Genome Institute (JGI) 3300037990 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 226805 263 1 0 1 0 SRX9411462 Unrestricted 0.0 single_particle_sort 3300014448 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.I20 DOE Joint Genome Institute (JGI) 3300014448 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1120470 1320 1 0 1 0 SRX3366643 Unrestricted 0.0 single_particle_sort 3300033954 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.L13 DOE Joint Genome Institute (JGI) 3300033954 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 337487 366 0 0 0 0 SRX7630362 Unrestricted 0.0 single_particle_sort 3300021763 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.D21 DOE Joint Genome Institute (JGI) 3300021763 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 670806 765 0 0 0 0 SRX3990751 Unrestricted 0.0 single_particle_sort 3300015878 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Ash Meadows Big Spring, Nevada, USA - unknown_bacterium_SCGC_AG-297-G09 DOE Joint Genome Institute (JGI) 3300015878 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Groundwater 36.42 -116.36 7.72 211113 266 0 0 0 0 SRX3781653 Unrestricted 0.0 single_particle_sort 3300019947 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-C8 DOE Joint Genome Institute (JGI) 3300019947 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 64535 77 0 0 0 0 SRX4653731 Unrestricted 0.0 single_particle_sort 3300024068 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR46.Redo.05.J14 DOE Joint Genome Institute (JGI) 3300024068 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.242 21.4899 426613 460 0 0 0 0 SRX4391260 Unrestricted 0.0 single_particle_sort 3300019657 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG_AG-578-L07 DOE Joint Genome Institute (JGI) 3300019657 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 157573 206 2 0 0 0 SRX3903186 Unrestricted 0.0 single_particle_sort 3300018228 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_G21 DOE Joint Genome Institute (JGI) 3300018228 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 712573 737 0 0 0 0 SRX4646719 Unrestricted 0.0 single_particle_sort 3300014997 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.D22 DOE Joint Genome Institute (JGI) 3300014997 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 236693 274 1 0 1 0 Restricted 0.0 single_particle_sort 3300023732 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.F14 DOE Joint Genome Institute (JGI) 3300023732 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 56907 61 0 0 0 0 SRX4548266 Unrestricted 0.0 single_particle_sort 3300022252 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Acetothermia_bacterium_SCGC_AH-147-O09 Bigelow Laboratory for Ocean Sciences 3300022252 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 1363866 1469 2 0 2 0 0.0 single_particle_sort 3300019523 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from Echinus Geyser water, Yellowstone National Park, Wyoming, United States - Nanoarchaeum sp. JGI 000156CP-L05 DOE Joint Genome Institute (JGI) 3300019523 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Acidic hot water 44.7225 -110.7014 1310042 1520 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300033844 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.K22 DOE Joint Genome Institute (JGI) 3300033844 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 695173 771 0 0 0 0 SRX7630471 Unrestricted 0.0 single_particle_sort 3300018464 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-I03 DOE Joint Genome Institute (JGI) 3300018464 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 2080139 2067 0 0 1 0 SRX3978575 Unrestricted 0.0 single_particle_sort 3300010810 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_39_SCGC_AG-138-N13 DOE Joint Genome Institute (JGI) 3300010810 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 458636 510 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023000 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - S2R-29 bacterium JGI MDM2 DC4-3-N14 DOE Joint Genome Institute (JGI) 3300023000 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 1615585 1560 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300019796 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-J6 DOE Joint Genome Institute (JGI) 3300019796 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 105552 109 0 0 0 0 SRX4663335 Unrestricted 0.0 single_particle_sort 3300032575 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.J19 DOE Joint Genome Institute (JGI) 3300032575 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 789510 761 1 0 1 0 SRX6427187 Unrestricted 0.0 single_particle_sort 3300051124 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_O17_SVS DOE Joint Genome Institute (JGI) 3300051124 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 95811 147 0 0 0 0 Restricted 0.0 single_particle_sort 3300049956 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_J10_SVS DOE Joint Genome Institute (JGI) 3300049956 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 42036 69 0 0 0 0 Restricted 0.0 single_particle_sort 3300021717 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.C21 DOE Joint Genome Institute (JGI) 3300021717 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 432733 467 0 0 0 0 SRX4009086 Unrestricted 0.0 single_particle_sort 3300013894 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.H12 DOE Joint Genome Institute (JGI) 3300013894 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 3048451 2694 1 0 1 0 SRX3366946 Unrestricted 0.0 single_particle_sort 3300050994 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 173_H4_SVS DOE Joint Genome Institute (JGI) 3300050994 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 211605 244 0 0 0 0 Restricted 0.0 single_particle_sort 3300018364 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Chlorobiales_bacterium_SCGC_AG-650-J08 DOE Joint Genome Institute (JGI) 3300018364 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1910677 1657 1 0 1 0 SRX3981258 Unrestricted 0.0 single_particle_sort 3300034456 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.L14 DOE Joint Genome Institute (JGI) 3300034456 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 1289633 1318 1 0 1 0 SRX8389312 Unrestricted 0.0 single_particle_sort 3300035787 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.I15 DOE Joint Genome Institute (JGI) 3300035787 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 638834 664 1 0 1 0 SRX8859346 Unrestricted 0.0 single_particle_sort 3300015471 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-C12 DOE Joint Genome Institute (JGI) 3300015471 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 166799 221 0 0 0 0 SRX3549154 Unrestricted 0.0 single_particle_sort 3300019691 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - archaeum_unknown_SCGC_AG-650-D09 DOE Joint Genome Institute (JGI) 3300019691 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 665528 770 1 0 1 0 SRX3979979 Unrestricted 0.0 single_particle_sort 3300035976 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.D17 DOE Joint Genome Institute (JGI) 3300035976 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 466473 474 1 0 1 0 SRX8854103 Unrestricted 0.0 single_particle_sort 3300019510 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Chloroflexi bacterium HL7711_P2H4 JGI 000147CP-C14 DOE Joint Genome Institute (JGI) 3300019510 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 1064070 1038 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300035853 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.I8 DOE Joint Genome Institute (JGI) 3300035853 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 1146110 1125 0 0 0 0 SRX8896978 Unrestricted 0.0 single_particle_sort 3300071209 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_D04_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071209 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 2976190 2987 3 0 1 0 Unrestricted 0.0 single_particle_sort 3300010823 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_38_SCGC_AG-159-N10 DOE Joint Genome Institute (JGI) 3300010823 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 523630 636 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015777 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-I12 DOE Joint Genome Institute (JGI) 3300015777 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 168706 232 0 0 0 0 SRX3563716 Unrestricted 0.0 single_particle_sort 3300041187 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.H16 DOE Joint Genome Institute (JGI) 3300041187 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1336150 1370 1 0 2 0 SRX9523941 Unrestricted 0.0 single_particle_sort 3300035943 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.G16 DOE Joint Genome Institute (JGI) 3300035943 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 887751 974 0 0 1 0 SRX8862633 Unrestricted 0.0 single_particle_sort 3300035481 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_C18 DOE Joint Genome Institute (JGI) 3300035481 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 439909 507 1 0 1 0 SRX9540272 Unrestricted 0.0 single_particle_sort 3300041610 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.2.J16 DOE Joint Genome Institute (JGI) 3300041610 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1318433 1541 0 0 0 0 SRX14832780 Unrestricted 0.0 single_particle_sort 3300015986 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-G09 DOE Joint Genome Institute (JGI) 3300015986 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 417526 454 0 0 0 0 SRX3540191 Unrestricted 0.0 single_particle_sort 3300019398 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent microbial mat, Guaymas Basin, Mexico - 6M_4868_08_02 DOE Joint Genome Institute (JGI) 3300019398 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.001 -110.5999 1236683 1606 0 0 0 0 SRX3974092 Unrestricted 0.0 single_particle_sort 3300041591 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.G14 DOE Joint Genome Institute (JGI) 3300041591 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1360601 1451 1 0 1 0 SRX10044852 Unrestricted 0.0 single_particle_sort 3300016297 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Microgenometes bacterium SCGC_AG-274-P05 DOE Joint Genome Institute (JGI) 3300016297 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 656883 752 1 0 1 0 SRX3578312 Unrestricted 0.0 single_particle_sort 3300035958 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.K9 DOE Joint Genome Institute (JGI) 3300035958 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1446023 1517 0 0 0 0 SRX8862690 Unrestricted 0.0 single_particle_sort 3300038029 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.I22 DOE Joint Genome Institute (JGI) 3300038029 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 384490 515 0 0 0 0 SRX9411182 Unrestricted 0.0 single_particle_sort 3300032595 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.K15 DOE Joint Genome Institute (JGI) 3300032595 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 218738 246 0 0 0 0 SRX6431290 Unrestricted 0.0 single_particle_sort 3300019987 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-D5 DOE Joint Genome Institute (JGI) 3300019987 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 999967 1020 0 0 1 0 SRX4653824 Unrestricted 0.0 single_particle_sort 3300033884 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.I22 DOE Joint Genome Institute (JGI) 3300033884 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 451632 508 1 0 1 0 SRX7626821 Unrestricted 0.0 single_particle_sort 3300041604 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.F9 DOE Joint Genome Institute (JGI) 3300041604 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 802570 892 1 0 1 0 SRX14830572 Unrestricted 0.0 single_particle_sort 3300023629 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.H6 DOE Joint Genome Institute (JGI) 3300023629 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 1691874 1769 1 0 1 0 SRX4415439 Unrestricted 0.0 single_particle_sort 3300034478 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.E21 DOE Joint Genome Institute (JGI) 3300034478 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 756225 808 1 0 1 0 SRX8390216 Unrestricted 0.0 single_particle_sort 3300050974 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_N15_SVS DOE Joint Genome Institute (JGI) 3300050974 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 83435 113 0 0 0 0 Restricted 0.0 single_particle_sort 3300016355 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-K08 DOE Joint Genome Institute (JGI) 3300016355 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 805104 846 1 0 1 0 SRX3563002 Unrestricted 0.0 single_particle_sort 3300038129 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.L15 DOE Joint Genome Institute (JGI) 3300038129 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 1476533 1496 1 0 1 0 SRX9411723 Unrestricted 0.0 single_particle_sort 3300035848 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.N5 DOE Joint Genome Institute (JGI) 3300035848 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 507583 608 1 0 1 0 SRX8896939 Unrestricted 0.0 single_particle_sort 3300033684 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P9_O18 DOE Joint Genome Institute (JGI) 3300033684 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 8227 15 0 0 0 0 SRX7531292 Unrestricted 0.0 single_particle_sort 3300023829 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.H19 DOE Joint Genome Institute (JGI) 3300023829 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 469891 585 0 0 0 0 SRX4390369 Unrestricted 0.0 single_particle_sort 3300019504 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Alphaproteobacteria bacterium HL7711_P5A1 JGI 000151CP-I22 DOE Joint Genome Institute (JGI) 3300019504 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 607008 628 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300016402 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-K18 DOE Joint Genome Institute (JGI) 3300016402 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 1128446 1014 0 0 0 0 SRX3578197 Unrestricted 0.0 single_particle_sort 3300015491 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown bacterium SCGC_AG-122-K18 DOE Joint Genome Institute (JGI) 3300015491 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 248996 301 0 0 1 0 SRX3573089 Unrestricted 0.0 single_particle_sort 3300019671 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - archaeum_unknown_SCGC_AG-650-O15 DOE Joint Genome Institute (JGI) 3300019671 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 260752 277 0 0 1 0 SRX3978133 Unrestricted 0.0 single_particle_sort 3300049978 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_O23_SVS DOE Joint Genome Institute (JGI) 3300049978 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 65438 57 0 0 0 0 Restricted 0.0 single_particle_sort 3300035996 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.I22 DOE Joint Genome Institute (JGI) 3300035996 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 629364 678 0 0 0 0 SRX8856750 Unrestricted 0.0 single_particle_sort 3300048714 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_F4_SVS DOE Joint Genome Institute (JGI) 3300048714 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 18484 24 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015121 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown archaeum SCGC_AG-274-B20 DOE Joint Genome Institute (JGI) 3300015121 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 425965 493 0 0 0 0 SRX3578307 Unrestricted 0.0 single_particle_sort 3300018349 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_I16 DOE Joint Genome Institute (JGI) 3300018349 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 1529779 1516 1 0 1 0 SRX4647099 Unrestricted 0.0 single_particle_sort 3300016277 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-G16 DOE Joint Genome Institute (JGI) 3300016277 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 611132 708 0 0 1 0 SRX3562926 Unrestricted 0.0 single_particle_sort 3300015797 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-N04 DOE Joint Genome Institute (JGI) 3300015797 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 190972 254 0 0 0 0 SRX3560797 Unrestricted 0.0 single_particle_sort 3300023345 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.J17 DOE Joint Genome Institute (JGI) 3300023345 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 999675 1129 1 0 0 0 SRX4519734 Unrestricted 0.0 single_particle_sort 3300015021 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.G6 DOE Joint Genome Institute (JGI) 3300015021 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 331386 416 0 0 0 0 Restricted 0.0 single_particle_sort 3300033222 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.F15 DOE Joint Genome Institute (JGI) 3300033222 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 186384 182 0 0 0 0 SRX7629295 Unrestricted 0.0 single_particle_sort 3300014388 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.I15 DOE Joint Genome Institute (JGI) 3300014388 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 236223 301 1 0 1 0 SRX3366645 Unrestricted 0.0 single_particle_sort 3300021672 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.F12 DOE Joint Genome Institute (JGI) 3300021672 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 207540 250 0 0 1 0 SRX4009652 Unrestricted 0.0 single_particle_sort 3300051136 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_A13_SVS DOE Joint Genome Institute (JGI) 3300051136 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 72101 103 0 0 0 0 Restricted 0.0 single_particle_sort 3300015656 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from a deep sea mud volcano in Anaximander Mountains, Eastern Mediterranean Sea - B17.2.2014 11 14 MDM2 B17 p2 16S.N15.double-seq DOE Joint Genome Institute (JGI) 3300015656 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Mud volcano Marine Unclassified Deep sea volcano 35.7369 30.475 748429 844 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300010804 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_41_SCGC_AG-159-N20 DOE Joint Genome Institute (JGI) 3300010804 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 401485 473 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300041147 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.F18 DOE Joint Genome Institute (JGI) 3300041147 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 793241 813 0 0 0 0 SRX9654238 Unrestricted 0.0 single_particle_sort 3300035983 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.H18 DOE Joint Genome Institute (JGI) 3300035983 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 733606 779 1 0 0 0 SRX8854942 Unrestricted 0.0 single_particle_sort 3300016455 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-I06 DOE Joint Genome Institute (JGI) 3300016455 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 1402538 1424 0 0 0 0 SRX3540651 Unrestricted 0.0 single_particle_sort 3300015946 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-J14 DOE Joint Genome Institute (JGI) 3300015946 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 333756 408 0 0 0 0 SRX3562941 Unrestricted 0.0 single_particle_sort 3300014453 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.D11 DOE Joint Genome Institute (JGI) 3300014453 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1152372 1407 1 0 1 0 SRX3366832 Unrestricted 0.0 single_particle_sort 3300015856 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown_bacterium_SCGC_AG-516-I23 DOE Joint Genome Institute (JGI) 3300015856 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Groundwater -28.24 26.8 8.55 139058 200 0 0 0 0 SRX3784220 Unrestricted 0.0 single_particle_sort 3300015973 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-K08 DOE Joint Genome Institute (JGI) 3300015973 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 371731 440 0 0 0 0 SRX3551329 Unrestricted 0.0 single_particle_sort 3300035747 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.N15 DOE Joint Genome Institute (JGI) 3300035747 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1057718 1162 0 0 0 0 SRX8857585 Unrestricted 0.0 single_particle_sort 3300033669 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P4_L7 DOE Joint Genome Institute (JGI) 3300033669 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 20384 28 0 0 0 0 SRX7530958 Unrestricted 0.0 single_particle_sort 3300037970 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.G10 DOE Joint Genome Institute (JGI) 3300037970 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 141528 175 0 0 0 0 SRX9411502 Unrestricted 0.0 single_particle_sort 3300022301 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Kiritimatiellaeota_bacterium_SCGC_AH-151-A22 Bigelow Laboratory for Ocean Sciences 3300022301 Metagenome - Single Particle Sort SPAdes 3.9.0 released by Jessica Jarett No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 2632675 2233 1 0 1 0 0.0 single_particle_sort 3300015751 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-I11 DOE Joint Genome Institute (JGI) 3300015751 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 128777 194 0 0 1 0 SRX3560815 Unrestricted 0.0 single_particle_sort 3300036745 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.L15.redo DOE Joint Genome Institute (JGI) 3300036745 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 230289 289 0 0 0 0 SRX8910085 Unrestricted 0.0 single_particle_sort 3300013037 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - DC4.3.2014 1216 MDM DC4 p3 16S.I22.double-seq DOE Joint Genome Institute (JGI) 3300013037 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 764312 982 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015698 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-3-C11 DOE Joint Genome Institute (JGI) 3300015698 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 112107 117 0 0 0 0 SRX3551356 Unrestricted 0.0 single_particle_sort 3300016500 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-M22 DOE Joint Genome Institute (JGI) 3300016500 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 264791 268 0 0 0 0 SRX3785636 Unrestricted 0.0 single_particle_sort 3300024709 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-N07 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024709 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 113524 134 0 0 0 0 0.0 single_particle_sort 3300022608 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Rhodospirillales bacterium JGI PCGPRD042217_30 DOE Joint Genome Institute (JGI) 3300022608 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 156359 186 1 0 1 0 SRX4415248 Unrestricted 0.0 single_particle_sort 3300033869 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.E9 DOE Joint Genome Institute (JGI) 3300033869 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 483877 561 1 0 1 0 SRX7626281 Unrestricted 0.0 single_particle_sort 3300018449 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_J8 DOE Joint Genome Institute (JGI) 3300018449 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 778171 797 0 0 1 0 SRX4651170 Unrestricted 0.0 single_particle_sort 3300014977 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.H6 DOE Joint Genome Institute (JGI) 3300014977 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 290743 375 0 0 1 0 Restricted 0.0 single_particle_sort 3300034743 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.2.D15 DOE Joint Genome Institute (JGI) 3300034743 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 2372495 2452 0 0 1 0 SRX8390265 Unrestricted 0.0 single_particle_sort 3300015457 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-K07 DOE Joint Genome Institute (JGI) 3300015457 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 133431 167 0 0 0 0 SRX3560344 Unrestricted 0.0 single_particle_sort 3300015391 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - unknown archaeum SCGC_AG-128-N20 DOE Joint Genome Institute (JGI) 3300015391 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 580540 702 1 0 1 0 SRX3577085 Unrestricted 0.0 single_particle_sort 3300015898 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown_bacterium_SCGC_AG-506-L05 DOE Joint Genome Institute (JGI) 3300015898 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Groundwater -28.24 26.8 292205 338 0 0 0 0 SRX3781588 Unrestricted 0.0 single_particle_sort 3300015812 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-F20 DOE Joint Genome Institute (JGI) 3300015812 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 238631 294 0 0 0 0 SRX3560690 Unrestricted 0.0 single_particle_sort 3300051003 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_G15_SVS DOE Joint Genome Institute (JGI) 3300051003 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 39423 71 0 0 0 0 Restricted 0.0 single_particle_sort 3300016302 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG-582-B20 DOE Joint Genome Institute (JGI) 3300016302 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 686182 754 1 0 1 0 SRX3579941 Unrestricted 0.0 single_particle_sort 3300021654 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.G15 DOE Joint Genome Institute (JGI) 3300021654 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 125402 141 0 0 0 0 SRX4009969 Unrestricted 0.0 single_particle_sort 3300032398 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.J19 DOE Joint Genome Institute (JGI) 3300032398 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 247730 293 0 0 1 0 SRX6433683 Unrestricted 0.0 single_particle_sort 3300016153 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-G07 DOE Joint Genome Institute (JGI) 3300016153 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 554312 660 0 0 1 0 SRX3540188 Unrestricted 0.0 single_particle_sort 3300038202 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.M17 DOE Joint Genome Institute (JGI) 3300038202 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 945185 1069 0 0 0 0 SRX9411830 Unrestricted 0.0 single_particle_sort 3300051792 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_C18_SVS DOE Joint Genome Institute (JGI) 3300051792 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 83919 113 0 0 0 0 Restricted 0.0 single_particle_sort 3300034714 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.2.K7 DOE Joint Genome Institute (JGI) 3300034714 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 2050871 2194 0 0 0 0 SRX8390475 Unrestricted 0.0 single_particle_sort 3300022940 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.I13 DOE Joint Genome Institute (JGI) 3300022940 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 25407 31 0 0 0 0 SRX4418791 Unrestricted 0.0 single_particle_sort 3300032510 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.J16 DOE Joint Genome Institute (JGI) 3300032510 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 291197 330 1 0 1 0 SRX6452138 Unrestricted 0.0 single_particle_sort 3300033238 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.L13 DOE Joint Genome Institute (JGI) 3300033238 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 287828 344 0 0 0 0 SRX7630601 Unrestricted 0.0 single_particle_sort 3300021719 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.I20 DOE Joint Genome Institute (JGI) 3300021719 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 450807 543 0 0 1 0 SRX3990300 Unrestricted 0.0 single_particle_sort 3300016558 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Sorted cell/s from deep shales in West Virginia, USA - MahaSR_06_G3 DOE Joint Genome Institute (JGI) 3300016558 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back deep subsurface 39.6017 -79.9761 1214573 1334 1 0 1 0 SRX3577090 Unrestricted 0.0 single_particle_sort 3300016053 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Microgenometes bacterium SCGC_AG-274-D17 DOE Joint Genome Institute (JGI) 3300016053 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 465505 536 1 0 1 0 SRX3578247 Unrestricted 0.0 single_particle_sort 3300032691 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.H19 DOE Joint Genome Institute (JGI) 3300032691 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 275302 323 1 0 0 0 SRX6427189 Unrestricted 0.0 single_particle_sort 3300023334 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.D5 DOE Joint Genome Institute (JGI) 3300023334 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 837286 767 1 0 1 0 SRX4548839 Unrestricted 0.0 single_particle_sort 3300033918 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.J18 DOE Joint Genome Institute (JGI) 3300033918 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 193385 220 0 0 0 0 SRX7626751 Unrestricted 0.0 single_particle_sort 3300041089 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.N9 DOE Joint Genome Institute (JGI) 3300041089 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 770723 750 0 0 0 0 SRX9654444 Unrestricted 0.0 single_particle_sort 3300023143 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.H9 DOE Joint Genome Institute (JGI) 3300023143 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 962396 1040 1 0 1 0 SRX4509962 Unrestricted 0.0 single_particle_sort 3300071207 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_G03_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071207 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 2039837 2293 2 0 1 0 Unrestricted 0.0 single_particle_sort 3300035789 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.I9 DOE Joint Genome Institute (JGI) 3300035789 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 433545 498 1 0 1 0 SRX8859659 Unrestricted 0.0 single_particle_sort 3300016596 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - NC10_bacterium_SCGC_AG-636-P20 DOE Joint Genome Institute (JGI) 3300016596 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Sediment Freshwater Unclassified Freshwater sediment 53.7598 107.9791 7.32 1882976 2062 0 0 0 0 SRX3784417 Unrestricted 0.0 single_particle_sort 3300022294 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - unknown_bacterium_SCGC_AH-151-I09 Bigelow Laboratory for Ocean Sciences 3300022294 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 1658287 1719 0 0 1 0 0.0 single_particle_sort 3300019575 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown archaeum SCGC_AG-274-G10 DOE Joint Genome Institute (JGI) 3300019575 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 37052 56 0 0 0 0 SRX3903135 Unrestricted 0.0 single_particle_sort 3300016299 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - Omnitrophica bacterium SCGC_AG-188-E20 DOE Joint Genome Institute (JGI) 3300016299 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 755144 753 0 0 0 0 SRX3577182 Unrestricted 0.0 single_particle_sort 3300050905 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_K6_SVS DOE Joint Genome Institute (JGI) 3300050905 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 56836 99 0 0 0 0 Restricted 0.0 single_particle_sort 3300015779 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-K14 DOE Joint Genome Institute (JGI) 3300015779 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 191938 234 0 0 0 0 SRX3560725 Unrestricted 0.0 single_particle_sort 3300041189 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.F6 DOE Joint Genome Institute (JGI) 3300041189 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1412972 1477 0 0 0 0 SRX9523934 Unrestricted 0.0 single_particle_sort 3300050842 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_I16_SVS DOE Joint Genome Institute (JGI) 3300050842 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 25793 41 0 0 0 0 Restricted 0.0 single_particle_sort 3300041164 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.C17 DOE Joint Genome Institute (JGI) 3300041164 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1740668 1867 1 0 1 0 SRX9653893 Unrestricted 0.0 single_particle_sort 3300036078 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_M12 DOE Joint Genome Institute (JGI) 3300036078 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 80918 97 0 0 0 0 SRX10046312 Unrestricted 0.0 single_particle_sort 3300041298 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.F4 DOE Joint Genome Institute (JGI) 3300041298 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1114947 1298 0 0 0 0 SRX9656624 Unrestricted 0.0 single_particle_sort 3300032657 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.E9 DOE Joint Genome Institute (JGI) 3300032657 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 473237 516 1 0 2 0 SRX6430499 Unrestricted 0.0 single_particle_sort 3300041212 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.H6 DOE Joint Genome Institute (JGI) 3300041212 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2221248 2211 1 0 0 0 SRX9651804 Unrestricted 0.0 single_particle_sort 3300016188 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-P01 DOE Joint Genome Institute (JGI) 3300016188 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 575997 722 0 0 0 0 SRX3580342 Unrestricted 0.0 single_particle_sort 3300050952 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-956-M05 DOE Joint Genome Institute (JGI) 3300050952 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1197303 -42.124435 539345 651 1 0 5 0 Restricted 0.0 single_particle_sort 3300034575 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.C19 DOE Joint Genome Institute (JGI) 3300034575 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 264303 294 0 0 0 0 SRX8393501 Unrestricted 0.0 single_particle_sort 3300035764 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.D21 DOE Joint Genome Institute (JGI) 3300035764 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 482720 556 0 0 0 0 SRX8857989 Unrestricted 0.0 single_particle_sort 3300016088 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-F06 DOE Joint Genome Institute (JGI) 3300016088 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 486181 570 0 0 0 0 SRX3540192 Unrestricted 0.0 single_particle_sort 3300016583 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - NC10_bacterium_SCGC_AG-636-L03 DOE Joint Genome Institute (JGI) 3300016583 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 1717478 1844 0 0 0 0 SRX3784413 Unrestricted 0.0 single_particle_sort 3300032498 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.F5 DOE Joint Genome Institute (JGI) 3300032498 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 571182 857 0 0 0 0 SRX6431733 Unrestricted 0.0 single_particle_sort 3300018387 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_J18 DOE Joint Genome Institute (JGI) 3300018387 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 2336116 2161 1 0 1 0 SRX4648672 Unrestricted 0.0 single_particle_sort 3300038255 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.C16 DOE Joint Genome Institute (JGI) 3300038255 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 174702 250 0 0 0 0 SRX9411189 Unrestricted 0.0 single_particle_sort 3300041256 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.N16 DOE Joint Genome Institute (JGI) 3300041256 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2423611 2491 0 0 0 0 SRX9651758 Unrestricted 0.0 single_particle_sort 3300050916 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-F20 DOE Joint Genome Institute (JGI) 3300050916 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 1608983 1726 1 0 0 0 Restricted 0.0 single_particle_sort 3300019659 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-578-L17 DOE Joint Genome Institute (JGI) 3300019659 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 157692 198 1 0 0 0 SRX3903183 Unrestricted 0.0 single_particle_sort 3300036734 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.K11.redo DOE Joint Genome Institute (JGI) 3300036734 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 982432 1082 1 0 1 0 SRX8907547 Unrestricted 0.0 single_particle_sort 3300019949 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-C19 DOE Joint Genome Institute (JGI) 3300019949 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 138071 173 0 0 0 0 SRX4653727 Unrestricted 0.0 single_particle_sort 3300035900 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.J15 DOE Joint Genome Institute (JGI) 3300035900 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 590200 726 0 0 0 0 SRX8899437 Unrestricted 0.0 single_particle_sort 3300014999 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.L6 DOE Joint Genome Institute (JGI) 3300014999 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 227429 282 0 0 0 0 Restricted 0.0 single_particle_sort 3300022271 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - unknown_bacterium_SCGC_AH-151-D02 Bigelow Laboratory for Ocean Sciences 3300022271 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 516769 502 0 0 0 0 0.0 single_particle_sort 3300022030 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - Acetothermia bacterium JGI MDM2 NGM80-2-J04 DOE Joint Genome Institute (JGI) 3300022030 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 784338 863 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300016407 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in well PM-3-1, Nye County Groundwater Evaluation Oasis Valley, Nevada, USA - Dependentiae_bacterium_SCGC_AG-293-J11 DOE Joint Genome Institute (JGI) 3300016407 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole Groundwater 36.96 -116.72 7.18 1007575 1041 1 0 2 0 SRX3781667 Unrestricted 0.0 single_particle_sort 3300010770 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_35_SCGC_AG-159-L09 DOE Joint Genome Institute (JGI) 3300010770 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 210718 273 0 0 2 0 Unrestricted 0.0 single_particle_sort 3300022130 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.D11 DOE Joint Genome Institute (JGI) 3300022130 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 3558351 3655 1 0 1 0 SRX3989915 Unrestricted 0.0 single_particle_sort 3300023906 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.I13 DOE Joint Genome Institute (JGI) 3300023906 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 952254 986 0 0 0 0 SRX4547505 Unrestricted 0.0 single_particle_sort 3300033227 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.D22 DOE Joint Genome Institute (JGI) 3300033227 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 131384 162 0 0 0 0 SRX7630266 Unrestricted 0.0 single_particle_sort 3300050889 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_G6_SVS DOE Joint Genome Institute (JGI) 3300050889 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 68092 109 0 0 0 0 Restricted 0.0 single_particle_sort 3300016272 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-D19 DOE Joint Genome Institute (JGI) 3300016272 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 584191 678 0 0 0 0 SRX3562824 Unrestricted 0.0 single_particle_sort 3300016633 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Ash Meadows Big Spring, Nevada, USA - unknown_bacterium_SCGC_AG-297-B13 DOE Joint Genome Institute (JGI) 3300016633 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Groundwater 36.42 -116.36 7.72 3684523 3420 1 0 1 0 SRX3781589 Unrestricted 0.0 single_particle_sort 3300015550 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-G18 DOE Joint Genome Institute (JGI) 3300015550 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 598898 662 0 0 0 0 SRX3549742 Unrestricted 0.0 single_particle_sort 3300015792 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-F08 DOE Joint Genome Institute (JGI) 3300015792 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 223422 248 0 0 0 0 SRX3560689 Unrestricted 0.0 single_particle_sort 3300032501 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.F16 DOE Joint Genome Institute (JGI) 3300032501 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 580693 744 0 0 1 0 SRX6426475 Unrestricted 0.0 single_particle_sort 3300015718 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown bacterium SCGC_AG-657-A02 DOE Joint Genome Institute (JGI) 3300015718 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 150977 169 0 0 0 0 SRX3593697 Unrestricted 0.0 single_particle_sort 3300014466 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.L08 DOE Joint Genome Institute (JGI) 3300014466 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1338274 1588 1 0 1 0 SRX3367896 Unrestricted 0.0 single_particle_sort 3300032674 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.G5 DOE Joint Genome Institute (JGI) 3300032674 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 466007 493 1 0 1 0 SRX6430394 Unrestricted 0.0 single_particle_sort 3300022125 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.L9 DOE Joint Genome Institute (JGI) 3300022125 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 2477680 2601 0 0 0 0 SRX3997827 Unrestricted 0.0 single_particle_sort 3300024073 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.N20 DOE Joint Genome Institute (JGI) 3300024073 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 502730 572 0 0 0 0 SRX4338066 Unrestricted 0.0 single_particle_sort 3300019982 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-D6 DOE Joint Genome Institute (JGI) 3300019982 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 697180 781 0 0 0 0 SRX4654053 Unrestricted 0.0 single_particle_sort 3300015863 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-E17 DOE Joint Genome Institute (JGI) 3300015863 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 175516 218 0 0 0 0 SRX3546987 Unrestricted 0.0 single_particle_sort 3300036624 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.G14 DOE Joint Genome Institute (JGI) 3300036624 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 763363 831 1 0 0 0 SRX8902885 Unrestricted 0.0 single_particle_sort 3300021778 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.E13 DOE Joint Genome Institute (JGI) 3300021778 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 987783 1114 0 0 0 0 SRX4009657 Unrestricted 0.0 single_particle_sort 3300023933 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.N16 DOE Joint Genome Institute (JGI) 3300023933 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 1084151 1174 0 0 0 0 SRX4502474 Unrestricted 0.0 single_particle_sort 3300016606 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Latescibacteria_bacterium_SCGC_AG-636-C05 DOE Joint Genome Institute (JGI) 3300016606 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 2481703 2314 1 0 1 0 SRX3784587 Unrestricted 0.0 single_particle_sort 3300015405 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Omnitrophica bacterium SCGC_AG-128-J23 DOE Joint Genome Institute (JGI) 3300015405 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 821324 877 1 0 1 0 SRX3577026 Unrestricted 0.0 single_particle_sort 3300033260 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.M17 DOE Joint Genome Institute (JGI) 3300033260 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 208341 231 1 0 1 0 SRX7630671 Unrestricted 0.0 single_particle_sort 3300022025 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - TA06 bacterium JGI MDM2 NGM80-1-L16 DOE Joint Genome Institute (JGI) 3300022025 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 787194 868 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300015663 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Jinze hot spring sediment, Tengchong, China - JNZ.1.2014 1216 MDM2 JNZ p1 16S.B13.double-seq DOE Joint Genome Institute (JGI) 3300015663 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 25.4413 98.46 881525 1100 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300013032 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - DC4.3.2014 1216 MDM DC4 p3 16S.F16.double-peak DOE Joint Genome Institute (JGI) 3300013032 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 227249 277 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300019961 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-E20 DOE Joint Genome Institute (JGI) 3300019961 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 349521 374 0 0 0 0 SRX4654316 Unrestricted 0.0 single_particle_sort 3300015617 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Gongxiaoshe hot spring sediment, Tengchong, China - GXS.2.2014 1201 MDM2 GXS p2 16S.M9.double-seq DOE Joint Genome Institute (JGI) 3300015617 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 25.4401 98.4408 63291 66 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300018108 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - uncultured microorganism JGI MDM2 ZSSED05-2-G10 DOE Joint Genome Institute (JGI) 3300018108 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 189423 255 0 0 0 0 SRX3917494 Unrestricted 0.0 single_particle_sort 3300015452 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-M14 DOE Joint Genome Institute (JGI) 3300015452 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 121475 162 0 0 0 0 SRX3550850 Unrestricted 0.0 single_particle_sort 3300015817 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-H19 DOE Joint Genome Institute (JGI) 3300015817 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 226870 305 0 0 0 0 SRX3560978 Unrestricted 0.0 single_particle_sort 3300016307 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-274-M21 DOE Joint Genome Institute (JGI) 3300016307 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 707218 760 1 0 1 0 SRX3578279 Unrestricted 0.0 single_particle_sort 3300024404 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.J8 DOE Joint Genome Institute (JGI) 3300024404 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 734131 777 0 0 0 0 SRX4547838 Unrestricted 0.0 single_particle_sort 3300023915 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.K12 DOE Joint Genome Institute (JGI) 3300023915 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 983482 1018 1 0 1 0 SRX4549590 Unrestricted 0.0 single_particle_sort 3300050864 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_A8_SVS DOE Joint Genome Institute (JGI) 3300050864 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 86031 140 0 0 0 0 Restricted 0.0 single_particle_sort 3300041142 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.I4 DOE Joint Genome Institute (JGI) 3300041142 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 4088412 3821 0 0 0 0 SRX9653915 Unrestricted 0.0 single_particle_sort 3300036019 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.J11 DOE Joint Genome Institute (JGI) 3300036019 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 901747 914 0 0 0 0 SRX8857935 Unrestricted 0.0 single_particle_sort 3300021677 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.J8 DOE Joint Genome Institute (JGI) 3300021677 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 178865 259 0 0 0 0 SRX4009938 Unrestricted 0.0 single_particle_sort 3300016615 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, USA - Aminicenantes_bacterium_SCGC_AG-640-P05 DOE Joint Genome Institute (JGI) 3300016615 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Acidic Artesian spring Sediment Hot spring sediment 34.9956 -98.6889 7.5 2718052 2500 1 0 1 0 SRX3784234 Unrestricted 0.0 single_particle_sort 3300015416 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Omnitrophica bacterium SCGC_AG-128-A16 DOE Joint Genome Institute (JGI) 3300015416 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 1112780 1144 1 0 0 0 SRX3574216 Unrestricted 0.0 single_particle_sort 3300035742 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.N20 DOE Joint Genome Institute (JGI) 3300035742 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 838000 895 1 0 1 0 SRX8857524 Unrestricted 0.0 single_particle_sort 3300035911 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_E8 DOE Joint Genome Institute (JGI) 3300035911 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 20815 27 0 0 0 0 SRX10045220 Unrestricted 0.0 single_particle_sort 3300018239 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-D07 DOE Joint Genome Institute (JGI) 3300018239 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 779599 795 0 0 0 0 SRX3978443 Unrestricted 0.0 single_particle_sort 3300041594 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.E4 DOE Joint Genome Institute (JGI) 3300041594 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 426443 457 0 0 0 0 SRX10044857 Unrestricted 0.0 single_particle_sort 3300071202 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_D06_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071202 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 3819605 3865 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300035484 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_F19 DOE Joint Genome Institute (JGI) 3300035484 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 151490 192 0 0 0 0 SRX9540491 Unrestricted 0.0 single_particle_sort 3300019894 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-M19 DOE Joint Genome Institute (JGI) 3300019894 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 64262 77 0 0 0 0 SRX4663368 Unrestricted 0.0 single_particle_sort 3300036640 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.C22 DOE Joint Genome Institute (JGI) 3300036640 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 974221 1144 1 0 1 0 SRX8904628 Unrestricted 0.0 single_particle_sort 3300022086 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.C6 DOE Joint Genome Institute (JGI) 3300022086 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1026259 1031 0 0 0 0 SRX3998267 Unrestricted 0.0 single_particle_sort 3300015474 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown archaeum SCGC_AG-122-G02 DOE Joint Genome Institute (JGI) 3300015474 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 184698 224 0 0 0 0 SRX3573084 Unrestricted 0.0 single_particle_sort 3300019694 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from underground thermal water from 5P borehole, Tomsk, Russia - Microgenometes_bacterium_SCGC_AG-717-A18 DOE Joint Genome Institute (JGI) 3300019694 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole Groundwater 58.0758 82.8374 7.49-7.6 852034 957 1 0 0 0 SRX3940798 Unrestricted 0.0 single_particle_sort 3300033448 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.E9 DOE Joint Genome Institute (JGI) 3300033448 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 1241681 1348 1 0 1 0 SRX7630353 Unrestricted 0.0 single_particle_sort 3300041263 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.D22 DOE Joint Genome Institute (JGI) 3300041263 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 277427 308 0 0 0 0 SRX9666171 Unrestricted 0.0 single_particle_sort 3300018361 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Spirochaetes_bacterium_SCGC_AG-650-K17 DOE Joint Genome Institute (JGI) 3300018361 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1723548 1684 0 0 1 0 SRX3981927 Unrestricted 0.0 single_particle_sort 3300050991 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 173_B9_SVS DOE Joint Genome Institute (JGI) 3300050991 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 16303 27 1 0 1 0 Restricted 0.0 single_particle_sort 3300013891 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.G11 DOE Joint Genome Institute (JGI) 3300013891 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 947363 1201 1 0 1 0 SRX3366939 Unrestricted 0.0 single_particle_sort 3300038207 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.J20 DOE Joint Genome Institute (JGI) 3300038207 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 381750 431 0 0 0 0 SRX9411020 Unrestricted 0.0 single_particle_sort 3300024375 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Burkholderia bacterium JGI PFNR15_C14 DOE Joint Genome Institute (JGI) 3300024375 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 44645 62 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300051121 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_N14_SVS DOE Joint Genome Institute (JGI) 3300051121 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 32770 38 0 0 0 0 Restricted 0.0 single_particle_sort 3300018150 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_H12 DOE Joint Genome Institute (JGI) 3300018150 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 550493 598 0 0 0 0 SRX4647592 Unrestricted 0.0 single_particle_sort 3300033841 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.D22 DOE Joint Genome Institute (JGI) 3300033841 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 443287 476 0 0 0 0 SRX7630472 Unrestricted 0.0 single_particle_sort 3300018461 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Chloroflexia_bacterium_SCGC_AG-650-P19 DOE Joint Genome Institute (JGI) 3300018461 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1728026 1638 0 0 0 0 SRX3979495 Unrestricted 0.0 single_particle_sort 3300015036 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.C5 DOE Joint Genome Institute (JGI) 3300015036 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 442502 500 1 0 1 0 Restricted 0.0 single_particle_sort 3300033348 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.G7 DOE Joint Genome Institute (JGI) 3300033348 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 386814 384 0 0 0 0 SRX7627202 Unrestricted 0.0 single_particle_sort 3300023990 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.E13 DOE Joint Genome Institute (JGI) 3300023990 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 2057029 2073 1 0 1 0 SRX4549240 Unrestricted 0.0 single_particle_sort 3300019419 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16002 DOE Joint Genome Institute (JGI) 3300019419 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 2105049 2273 1 0 1 0 SRX3985607 Unrestricted 0.0 single_particle_sort 3300015136 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - unknown bacterium SCGC_AG-290-K04 DOE Joint Genome Institute (JGI) 3300015136 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 557029 627 0 0 0 0 SRX3578736 Unrestricted 0.0 single_particle_sort 3300022259 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Kiritimatiellaeota_bacterium_SCGC_AH-151-K23 Bigelow Laboratory for Ocean Sciences 3300022259 Metagenome - Single Particle Sort SPAdes 3.9.0 released by Jessica Jarett No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 431650 418 1 0 2 0 0.0 single_particle_sort 3300023739 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.M12 DOE Joint Genome Institute (JGI) 3300023739 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 96323 106 0 0 0 0 SRX4548014 Unrestricted 0.0 single_particle_sort 3300016254 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Saccharibacteria bacterium SCGC_AG-574-C20 DOE Joint Genome Institute (JGI) 3300016254 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 532917 618 1 0 1 0 SRX3578824 Unrestricted 0.0 single_particle_sort 3300016066 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-578-O03 DOE Joint Genome Institute (JGI) 3300016066 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 461011 548 1 0 0 0 SRX3579475 Unrestricted 0.0 single_particle_sort 3300033773 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_G23 DOE Joint Genome Institute (JGI) 3300033773 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 14342 28 0 0 0 0 SRX7525359 Unrestricted 0.0 single_particle_sort 3300016511 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-C03 DOE Joint Genome Institute (JGI) 3300016511 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 457729 434 0 0 0 0 SRX3784697 Unrestricted 0.0 single_particle_sort 3300041217 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.N5 DOE Joint Genome Institute (JGI) 3300041217 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1737931 1739 0 0 0 0 SRX9652646 Unrestricted 0.0 single_particle_sort 3300015003 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.G11 DOE Joint Genome Institute (JGI) 3300015003 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 234397 308 0 0 0 0 Restricted 0.0 single_particle_sort 3300015508 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-J11 DOE Joint Genome Institute (JGI) 3300015508 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 311018 381 0 0 1 0 SRX3560333 Unrestricted 0.0 single_particle_sort 3300021699 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.L19 DOE Joint Genome Institute (JGI) 3300021699 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 373559 430 1 0 0 0 SRX4009718 Unrestricted 0.0 single_particle_sort 3300050847 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_K19_SVS DOE Joint Genome Institute (JGI) 3300050847 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 42255 53 0 0 0 0 Restricted 0.0 single_particle_sort 3300071255 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_Wchmk_C09_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071255 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 790590 896 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300013028 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.I04 DOE Joint Genome Institute (JGI) 3300013028 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 566734 624 1 0 1 0 SRX3367100 Unrestricted 0.0 single_particle_sort 3300015103 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-I04 DOE Joint Genome Institute (JGI) 3300015103 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 345433 380 1 0 0 0 SRX3578327 Unrestricted 0.0 single_particle_sort 3300018382 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_H12 DOE Joint Genome Institute (JGI) 3300018382 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 2157167 2058 1 0 1 0 SRX4649175 Unrestricted 0.0 single_particle_sort 3300016166 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Omnitrophica bacterium SCGC_AG-582-O18 DOE Joint Genome Institute (JGI) 3300016166 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 599337 684 1 0 0 0 SRX3580057 Unrestricted 0.0 single_particle_sort 3300022093 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.G7 DOE Joint Genome Institute (JGI) 3300022093 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1196602 1206 0 0 0 0 SRX3998134 Unrestricted 0.0 single_particle_sort 3300050957 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_C4_SVS DOE Joint Genome Institute (JGI) 3300050957 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 95159 92 0 0 0 0 Restricted 0.0 single_particle_sort 3300035469 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_I14 DOE Joint Genome Institute (JGI) 3300035469 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 24315 28 0 0 0 0 SRX9539990 Unrestricted 0.0 single_particle_sort 3300022116 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.D19 DOE Joint Genome Institute (JGI) 3300022116 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 2501480 2495 1 0 1 0 SRX3998087 Unrestricted 0.0 single_particle_sort 3300016562 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, USA - Atribacteria_bacterium_SCGC_AG-640-M16 DOE Joint Genome Institute (JGI) 3300016562 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Acidic Artesian spring Sediment Hot spring sediment 34.9956 -98.6889 7.5 1581067 1557 1 0 1 0 SRX3784236 Unrestricted 0.0 single_particle_sort 3300018456 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-J23 DOE Joint Genome Institute (JGI) 3300018456 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1647690 1611 0 0 0 0 SRX3981253 Unrestricted 0.0 single_particle_sort 3300019389 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16015 DOE Joint Genome Institute (JGI) 3300019389 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 1064366 1091 1 0 1 0 SRX3985669 Unrestricted 0.0 single_particle_sort 3300023141 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.C11 DOE Joint Genome Institute (JGI) 3300023141 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 814500 936 1 0 1 0 SRX4511128 Unrestricted 0.0 single_particle_sort 3300022016 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - Acetothermia bacterium JGI MDM2 NGM80-2-K17 DOE Joint Genome Institute (JGI) 3300022016 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 604123 674 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300033966 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.I16 DOE Joint Genome Institute (JGI) 3300033966 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 524617 583 0 0 0 0 SRX7630392 Unrestricted 0.0 single_particle_sort 3300036047 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_H20 DOE Joint Genome Institute (JGI) 3300036047 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 1140572 1102 1 0 2 0 SRX10045843 Unrestricted 0.0 single_particle_sort 3300016360 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-L11 DOE Joint Genome Institute (JGI) 3300016360 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 710360 852 1 0 1 0 SRX3580244 Unrestricted 0.0 single_particle_sort 3300024094 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.M11 DOE Joint Genome Institute (JGI) 3300024094 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 949831 1059 1 0 2 0 SRX4519612 Unrestricted 0.0 single_particle_sort 3300018128 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_D8 DOE Joint Genome Institute (JGI) 3300018128 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 449047 484 0 0 0 0 SRX4647595 Unrestricted 0.0 single_particle_sort 3300015849 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown_bacterium_SCGC_AG-516-P01 DOE Joint Genome Institute (JGI) 3300015849 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Groundwater -28.24 26.8 8.55 93382 149 0 0 0 0 SRX3784212 Unrestricted 0.0 single_particle_sort 3300032387 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.C9 DOE Joint Genome Institute (JGI) 3300032387 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 1025334 1159 1 0 1 0 SRX6656648 Unrestricted 0.0 single_particle_sort 3300015532 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-G07 DOE Joint Genome Institute (JGI) 3300015532 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 397428 485 0 0 0 0 SRX3549745 Unrestricted 0.0 single_particle_sort 3300032693 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.F19 DOE Joint Genome Institute (JGI) 3300032693 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 974903 1094 0 0 0 0 SRX6426335 Unrestricted 0.0 single_particle_sort 3300016051 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-D10 DOE Joint Genome Institute (JGI) 3300016051 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 487862 536 0 0 0 0 SRX3563201 Unrestricted 0.0 single_particle_sort 3300015959 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-188-G03 DOE Joint Genome Institute (JGI) 3300015959 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 385350 425 1 0 1 0 SRX3577178 Unrestricted 0.0 single_particle_sort 3300016327 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown archaeum SCGC_AG-582-I02 DOE Joint Genome Institute (JGI) 3300016327 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 656686 785 0 0 1 0 SRX3580008 Unrestricted 0.0 single_particle_sort 3300015649 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Jinze hot spring sediment, Tengchong, China - JNZ.1.2014 1216 MDM2 JNZ p1 16S.I10.double-seq DOE Joint Genome Institute (JGI) 3300015649 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 25.4413 98.46 583138 758 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300019464 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-2.H6 DOE Joint Genome Institute (JGI) 3300019464 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 70178 96 1 0 1 0 Restricted 0.0 single_particle_sort 3300024194 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Pseudomonas bacterium JGI PFNR15_J15 DOE Joint Genome Institute (JGI) 3300024194 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 168759 215 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300016151 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS8_C11 DOE Joint Genome Institute (JGI) 3300016151 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 504667 658 0 0 0 0 SRX4060854 Unrestricted 0.0 single_particle_sort 3300033372 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.E7 DOE Joint Genome Institute (JGI) 3300033372 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 291426 207 0 0 0 0 SRX7627212 Unrestricted 0.0 single_particle_sort 3300014479 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.K07 DOE Joint Genome Institute (JGI) 3300014479 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1519237 1790 1 0 1 0 SRX3366649 Unrestricted 0.0 single_particle_sort 3300024424 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Pedobacter bacterium JGI PFNR15_N5 DOE Joint Genome Institute (JGI) 3300024424 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 890270 970 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300016460 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown archaeum SCGC_AG-278-B23 DOE Joint Genome Institute (JGI) 3300016460 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 1153045 1448 1 0 1 0 SRX3578353 Unrestricted 0.0 single_particle_sort 3300015095 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-E23 DOE Joint Genome Institute (JGI) 3300015095 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 204153 251 0 0 0 0 SRX3578322 Unrestricted 0.0 single_particle_sort 3300032686 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.E17 DOE Joint Genome Institute (JGI) 3300032686 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 728692 774 0 0 0 0 SRX6452411 Unrestricted 0.0 single_particle_sort 3300050968 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_F8_SVS DOE Joint Genome Institute (JGI) 3300050968 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 35334 53 0 0 0 0 Restricted 0.0 single_particle_sort 3300071238 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_edMDA_F05_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071238 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 713274 843 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300036604 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.I7 DOE Joint Genome Institute (JGI) 3300036604 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 778560 877 0 0 0 0 SRX8902165 Unrestricted 0.0 single_particle_sort 3300035899 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.I15 DOE Joint Genome Institute (JGI) 3300035899 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 1811328 1830 1 0 1 0 SRX8899381 Unrestricted 0.0 single_particle_sort 3300022105 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.L5 DOE Joint Genome Institute (JGI) 3300022105 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1509881 1474 1 0 1 0 SRX3997826 Unrestricted 0.0 single_particle_sort 3300019489 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Rhodobaca sp. OCL_P2D11 JGI 000147CP-K19 DOE Joint Genome Institute (JGI) 3300019489 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 101599 115 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300034464 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.H13 DOE Joint Genome Institute (JGI) 3300034464 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 198975 237 0 0 0 0 SRX8389555 Unrestricted 0.0 single_particle_sort 3300015425 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-M09 DOE Joint Genome Institute (JGI) 3300015425 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 59272 85 0 0 0 0 SRX3550857 Unrestricted 0.0 single_particle_sort 3300050772 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_P16_SVS DOE Joint Genome Institute (JGI) 3300050772 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 50205 62 0 0 0 0 Restricted 0.0 single_particle_sort 3300022005 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - TA06 bacterium JGI MDM2 NGM80-2-G05 DOE Joint Genome Institute (JGI) 3300022005 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 481888 566 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300016626 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from freshwater in Walker Pond, Maine, USA - unknown_bacterium_SCGC_AG-301-O08 DOE Joint Genome Institute (JGI) 3300016626 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.86 -69.58 7.45 3158884 2895 1 0 1 0 SRX3782170 Unrestricted 0.0 single_particle_sort 3300015430 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-J08 DOE Joint Genome Institute (JGI) 3300015430 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 98667 111 0 0 0 0 SRX3560337 Unrestricted 0.0 single_particle_sort 3300041287 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.1.E8 DOE Joint Genome Institute (JGI) 3300041287 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 930500 1098 0 0 0 0 SRX9654846 Unrestricted 0.0 single_particle_sort 3300016581 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Latescibacteria_bacterium_SCGC_AG-636-P15 DOE Joint Genome Institute (JGI) 3300016581 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 1975639 1833 1 0 1 0 SRX3784589 Unrestricted 0.0 single_particle_sort 3300033472 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.K9 DOE Joint Genome Institute (JGI) 3300033472 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 1977311 2105 0 0 0 0 SRX7630345 Unrestricted 0.0 single_particle_sort 3300016197 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Omnitrophica bacterium SCGC_AG-574-E16 DOE Joint Genome Institute (JGI) 3300016197 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 215605 243 1 0 1 0 SRX3578822 Unrestricted 0.0 single_particle_sort 3300016427 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown archaeum SCGC_AG-574-F09 DOE Joint Genome Institute (JGI) 3300016427 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 930983 1137 0 0 0 0 SRX3578834 Unrestricted 0.0 single_particle_sort 3300023577 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.C22 DOE Joint Genome Institute (JGI) 3300023577 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 94103 137 0 0 0 0 SRX4416322 Unrestricted 0.0 single_particle_sort 3300033207 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.M17 DOE Joint Genome Institute (JGI) 3300033207 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 590675 662 1 0 1 0 SRX7630250 Unrestricted 0.0 single_particle_sort 3300023926 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.05.G13 DOE Joint Genome Institute (JGI) 3300023926 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 1017519 1125 1 0 1 0 SRX4390998 Unrestricted 0.0 single_particle_sort 3300016097 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Aminicenantes_bacterium_SCGC_AG-636-F15 DOE Joint Genome Institute (JGI) 3300016097 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 498046 575 1 0 1 0 SRX3784412 Unrestricted 0.0 single_particle_sort 3300018398 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_L6 DOE Joint Genome Institute (JGI) 3300018398 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 2490745 2342 1 0 1 0 SRX4649171 Unrestricted 0.0 single_particle_sort 3300018312 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Syntrophaceae_bacterium_SCGC_AG-650-G04 DOE Joint Genome Institute (JGI) 3300018312 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1247832 1256 0 0 0 0 SRX3976978 Unrestricted 0.0 single_particle_sort 3300049964 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_K6_SVS DOE Joint Genome Institute (JGI) 3300049964 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 33148 41 0 0 0 0 Restricted 0.0 single_particle_sort 3300010745 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_11_SCGC_AG-138-F05 DOE Joint Genome Institute (JGI) 3300010745 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 142772 174 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015023 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.K16 DOE Joint Genome Institute (JGI) 3300015023 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 339917 430 0 0 0 0 Restricted 0.0 single_particle_sort 3300015528 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - Parcubacteria bacterium SCGC_AG-122-K19 DOE Joint Genome Institute (JGI) 3300015528 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 378178 465 0 0 0 0 SRX3573099 Unrestricted 0.0 single_particle_sort 3300061744 *Microbiome Permanent Draft Groundwater microbial communities from wells in Ash Sharqiyah North Governorate, Oman Sorted cell/s from groundwater from well in Ash Sharqiyah North Governorate, Oman - Uncultured microbe JGI_Spietz.NSHQ14.ReSo.02.G7 DOE Joint Genome Institute (JGI) 3300061744 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes rachel.spietz@montana.edu Rachel Spietz No Environmental Aquatic Groundwater Freshwater Unclassified groundwater 22.8661 58.7106 262727 342 0 0 0 0 Restricted 0.0 single_particle_sort 3300019956 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-H13 DOE Joint Genome Institute (JGI) 3300019956 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 194413 220 0 0 0 0 SRX4655802 Unrestricted 0.0 single_particle_sort 3300019646 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-N02 DOE Joint Genome Institute (JGI) 3300019646 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 110049 133 0 0 0 0 SRX3959654 Unrestricted 0.0 single_particle_sort 3300035778 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.F9 DOE Joint Genome Institute (JGI) 3300035778 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 747759 817 0 0 1 0 SRX8858106 Unrestricted 0.0 single_particle_sort 3300018132 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_I20 DOE Joint Genome Institute (JGI) 3300018132 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 447037 502 0 0 1 0 SRX4646706 Unrestricted 0.0 single_particle_sort 3300036064 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_J7 DOE Joint Genome Institute (JGI) 3300036064 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 70977 86 0 0 2 0 SRX10045975 Unrestricted 0.0 single_particle_sort 3300041249 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.K19 DOE Joint Genome Institute (JGI) 3300041249 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2612472 2623 1 0 0 0 SRX9651699 Unrestricted 0.0 single_particle_sort 3300022637 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States - Burkholderiales bacterium JGI AMGPRD042217_9 DOE Joint Genome Institute (JGI) 3300022637 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 7225046 8441 0 0 0 0 SRX4411915 Unrestricted 0.0 single_particle_sort 3300015123 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - Parcubacteria bacterium SCGC_AG-290-K22 DOE Joint Genome Institute (JGI) 3300015123 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 404478 517 0 0 0 0 SRX3578740 Unrestricted 0.0 single_particle_sort 3300019673 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown archaeum SCGC_AG-122-F05 DOE Joint Genome Institute (JGI) 3300019673 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 219850 304 0 0 0 0 SRX3573066 Unrestricted 0.0 single_particle_sort 3300035962 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.I19 DOE Joint Genome Institute (JGI) 3300035962 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1335495 1390 1 0 1 0 SRX8862702 Unrestricted 0.0 single_particle_sort 3300041178 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.G20 DOE Joint Genome Institute (JGI) 3300041178 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 852972 817 0 0 0 0 SRX9664446 Unrestricted 0.0 single_particle_sort 3300019846 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-M9 DOE Joint Genome Institute (JGI) 3300019846 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 1011142 935 0 0 0 0 SRX4663404 Unrestricted 0.0 single_particle_sort 3300015788 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-F20 DOE Joint Genome Institute (JGI) 3300015788 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 174898 245 0 0 0 0 SRX3560814 Unrestricted 0.0 single_particle_sort 3300015493 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown archaeum SCGC_AG-122-G23 DOE Joint Genome Institute (JGI) 3300015493 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 250233 304 0 0 0 0 SRX3573087 Unrestricted 0.0 single_particle_sort 3300050754 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_B6_SVS DOE Joint Genome Institute (JGI) 3300050754 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 121439 185 0 0 0 0 Restricted 0.0 single_particle_sort 3300033454 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.J7 DOE Joint Genome Institute (JGI) 3300033454 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 299286 353 0 0 0 0 SRX7630280 Unrestricted 0.0 single_particle_sort 3300015386 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - unknown archaeum SCGC_AG-128-I21 DOE Joint Genome Institute (JGI) 3300015386 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 476422 557 1 0 1 0 SRX3577014 Unrestricted 0.0 single_particle_sort 3300019912 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-N9 DOE Joint Genome Institute (JGI) 3300019912 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 499356 567 1 0 2 0 SRX4663575 Unrestricted 0.0 single_particle_sort 3300019447 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent microbial mat, Guaymas Basin, Mexico - 4E_dil_4869_18_06 DOE Joint Genome Institute (JGI) 3300019447 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.001 -110.5998 18151602 16356 4 0 4 0 SRX3973875 Unrestricted 0.0 single_particle_sort 3300015393 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - unknown archaeum SCGC_AG-128-E05 DOE Joint Genome Institute (JGI) 3300015393 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 568948 742 0 0 1 0 SRX3574399 Unrestricted 0.0 single_particle_sort 3300051001 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 173_O5_SVS DOE Joint Genome Institute (JGI) 3300051001 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 56766 55 0 0 0 0 Restricted 0.0 single_particle_sort 3300015110 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-F19 DOE Joint Genome Institute (JGI) 3300015110 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 359011 399 0 0 1 0 SRX3578323 Unrestricted 0.0 single_particle_sort 3300035877 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.D15 DOE Joint Genome Institute (JGI) 3300035877 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1958077 1995 1 0 1 0 SRX8857305 Unrestricted 0.0 single_particle_sort 3300024639 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-G15 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024639 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 53281 76 0 0 0 0 0.0 single_particle_sort 3300034741 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.1.K16 DOE Joint Genome Institute (JGI) 3300034741 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 2667527 2695 1 0 1 0 SRX8390266 Unrestricted 0.0 single_particle_sort 3300021742 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.K15 DOE Joint Genome Institute (JGI) 3300021742 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 627131 771 0 0 0 0 SRX4009681 Unrestricted 0.0 single_particle_sort 3300038227 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.H14 DOE Joint Genome Institute (JGI) 3300038227 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 594775 661 1 0 1 0 SRX9411075 Unrestricted 0.0 single_particle_sort 3300015010 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.D12 DOE Joint Genome Institute (JGI) 3300015010 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 296378 358 1 0 1 0 Restricted 0.0 single_particle_sort 3300015753 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-D07 DOE Joint Genome Institute (JGI) 3300015753 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 156750 197 0 0 0 0 SRX3560680 Unrestricted 0.0 single_particle_sort 3300032630 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.D8 DOE Joint Genome Institute (JGI) 3300032630 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 968902 970 0 0 0 0 SRX6655597 Unrestricted 0.0 single_particle_sort 3300015887 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-B15 DOE Joint Genome Institute (JGI) 3300015887 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 238440 293 0 0 1 0 SRX3539851 Unrestricted 0.0 single_particle_sort 3300024839 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-A14 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024839 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 139785 172 0 0 0 0 0.0 single_particle_sort 3300032349 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.M5 DOE Joint Genome Institute (JGI) 3300032349 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 570368 679 0 0 0 0 SRX6433686 Unrestricted 0.0 single_particle_sort 3300023985 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.G15 DOE Joint Genome Institute (JGI) 3300023985 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1893358 1979 0 0 0 0 SRX4519602 Unrestricted 0.0 single_particle_sort 3300016248 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-E16 DOE Joint Genome Institute (JGI) 3300016248 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 497889 590 0 0 1 0 SRX3562887 Unrestricted 0.0 single_particle_sort 3300035476 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_L15 DOE Joint Genome Institute (JGI) 3300035476 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 24332 31 0 0 0 0 SRX9540270 Unrestricted 0.0 single_particle_sort 3300010734 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_20_SCGC_AG-159-F10 DOE Joint Genome Institute (JGI) 3300010734 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 87858 113 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015971 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-K04 DOE Joint Genome Institute (JGI) 3300015971 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 353641 436 0 0 0 0 SRX3560724 Unrestricted 0.0 single_particle_sort 3300071222 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_Wchmk_D10_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071222 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 1124099 1155 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300023599 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.J4 DOE Joint Genome Institute (JGI) 3300023599 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 582326 643 0 0 0 0 SRX4415565 Unrestricted 0.0 single_particle_sort 3300038260 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.05.I12 DOE Joint Genome Institute (JGI) 3300038260 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 34761 36 0 0 0 0 SRX9411213 Unrestricted 0.0 single_particle_sort 3300036089 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_D17 DOE Joint Genome Institute (JGI) 3300036089 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 435759 529 1 0 1 0 SRX10046436 Unrestricted 0.0 single_particle_sort 3300014397 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.L17 DOE Joint Genome Institute (JGI) 3300014397 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 360394 480 0 0 1 0 SRX3368434 Unrestricted 0.0 single_particle_sort 3300014451 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.K18 DOE Joint Genome Institute (JGI) 3300014451 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1138735 1391 1 0 0 0 SRX3367789 Unrestricted 0.0 single_particle_sort 3300033794 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P1_H12 DOE Joint Genome Institute (JGI) 3300033794 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 6824 10 0 0 0 0 SRX7525343 Unrestricted 0.0 single_particle_sort 3300016179 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown archaeum SCGC_AG-582-B02 DOE Joint Genome Institute (JGI) 3300016179 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 569882 707 0 0 0 0 SRX3580156 Unrestricted 0.0 single_particle_sort 3300015486 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-K05 DOE Joint Genome Institute (JGI) 3300015486 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 240769 274 0 0 1 0 SRX3560345 Unrestricted 0.0 single_particle_sort 3300049947 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_G6_SVS DOE Joint Genome Institute (JGI) 3300049947 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 104683 148 0 0 0 0 Restricted 0.0 single_particle_sort 3300035981 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.J14 DOE Joint Genome Institute (JGI) 3300035981 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 976826 1009 1 0 1 0 SRX8854178 Unrestricted 0.0 single_particle_sort 3300033354 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.M7 DOE Joint Genome Institute (JGI) 3300033354 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 166943 210 0 0 0 0 SRX7630499 Unrestricted 0.0 single_particle_sort 3300016079 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-G18 DOE Joint Genome Institute (JGI) 3300016079 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 457955 559 1 0 0 0 SRX3563249 Unrestricted 0.0 single_particle_sort 3300031907 *Microbiome Permanent Draft Subsurface sediment and ocean crust microbial communities from Atlantis Massif Sorted cell/s from oceanic crust serpentinized dunite with carbonate veins in Atlantis Massif, mid-Atlantic ridge, Atlantic Ocean - 69A 9R2 50-60 cm Marine Biological Laboratory 3300031907 Metagenome - Single Particle Sort SPAdes v. 3.9.0 released by JGI data releasing policy No Yes jackiegoordial@gmail.com Jackie Goordial No Environmental Aquatic Oceanic Marine Rock Oceanic crust 30.12983 -42.122 3372989 4025 2 0 2 0 0.0 single_particle_sort 3300032382 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.N8 DOE Joint Genome Institute (JGI) 3300032382 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 682221 1040 0 0 0 0 SRX6449956 Unrestricted 0.0 single_particle_sort 3300051788 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_G9_SVS DOE Joint Genome Institute (JGI) 3300051788 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 26179 44 0 0 0 0 Restricted 0.0 single_particle_sort 3300015537 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-J14 DOE Joint Genome Institute (JGI) 3300015537 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 459559 526 0 0 0 0 SRX3560334 Unrestricted 0.0 single_particle_sort 3300016520 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-188-D13 DOE Joint Genome Institute (JGI) 3300016520 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 455173 513 1 0 1 0 SRX3577118 Unrestricted 0.0 single_particle_sort 3300023470 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.C22 DOE Joint Genome Institute (JGI) 3300023470 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 908520 994 0 0 0 0 SRX4548262 Unrestricted 0.0 single_particle_sort 3300024589 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-I07 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024589 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 23775 27 0 0 0 0 0.0 single_particle_sort 3300037945 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.K20 DOE Joint Genome Institute (JGI) 3300037945 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 473462 532 0 0 0 0 SRX9410597 Unrestricted 0.0 single_particle_sort 3300051123 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_N6_SVS DOE Joint Genome Institute (JGI) 3300051123 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 84768 125 0 0 0 0 Restricted 0.0 single_particle_sort 3300032580 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.F13 DOE Joint Genome Institute (JGI) 3300032580 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 821424 866 1 0 1 0 SRX6452141 Unrestricted 0.0 single_particle_sort 3300013893 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.M07 DOE Joint Genome Institute (JGI) 3300013893 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1072021 1323 1 0 2 0 SRX3366681 Unrestricted 0.0 single_particle_sort 3300033377 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.E9 DOE Joint Genome Institute (JGI) 3300033377 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 1640590 1476 1 0 1 0 SRX7627294 Unrestricted 0.0 single_particle_sort 3300022628 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States - Sphingomonadales bacterium JGI AMGPRD042217_12 DOE Joint Genome Institute (JGI) 3300022628 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 563980 681 1 0 1 0 SRX4414235 Unrestricted 0.0 single_particle_sort 3300015565 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown archaeum SCGC_AG-122-M23 DOE Joint Genome Institute (JGI) 3300015565 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 623446 716 0 0 0 0 SRX3574085 Unrestricted 0.0 single_particle_sort 3300024729 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-F02 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024729 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 127512 150 0 0 0 0 0.0 single_particle_sort 3300021789 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.G22 DOE Joint Genome Institute (JGI) 3300021789 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 2710092 2851 1 0 1 0 SRX3990275 Unrestricted 0.0 single_particle_sort 3300016322 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG-574-E20 DOE Joint Genome Institute (JGI) 3300016322 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 686113 776 1 0 1 0 SRX3578821 Unrestricted 0.0 single_particle_sort 3300050993 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 173_D4_SVS DOE Joint Genome Institute (JGI) 3300050993 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 108804 158 0 0 0 0 Restricted 0.0 single_particle_sort 3300041261 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.K7 DOE Joint Genome Institute (JGI) 3300041261 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 728763 871 1 0 1 0 SRX9666176 Unrestricted 0.0 single_particle_sort 3300016567 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Aminicenantes_bacterium_SCGC_AG-636-K10 DOE Joint Genome Institute (JGI) 3300016567 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 1647701 1624 1 0 0 0 SRX3784473 Unrestricted 0.0 single_particle_sort 3300018363 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_L8 DOE Joint Genome Institute (JGI) 3300018363 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 1721575 1707 0 0 1 0 SRX4647028 Unrestricted 0.0 single_particle_sort 3300010824 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_9_SCGC_AG-159-D05 DOE Joint Genome Institute (JGI) 3300010824 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 565411 648 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300035854 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.G9 DOE Joint Genome Institute (JGI) 3300035854 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 882610 991 0 0 0 0 SRX8897019 Unrestricted 0.0 single_particle_sort 3300035719 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_F15 DOE Joint Genome Institute (JGI) 3300035719 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 35986 55 0 0 0 0 SRX10045713 Unrestricted 0.0 single_particle_sort 3300016535 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-A17 DOE Joint Genome Institute (JGI) 3300016535 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 603103 697 1 0 1 0 SRX3577113 Unrestricted 0.0 single_particle_sort 3300036042 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_I22 DOE Joint Genome Institute (JGI) 3300036042 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 33191 43 0 0 0 0 SRX10077100 Unrestricted 0.0 single_particle_sort 3300033255 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Ontario, Canada - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.C6 DOE Joint Genome Institute (JGI) 3300033255 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 99865 109 0 0 0 0 SRX7630688 Unrestricted 0.0 single_particle_sort 3300050878 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_D19_SVS DOE Joint Genome Institute (JGI) 3300050878 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 34447 40 0 0 0 0 Restricted 0.0 single_particle_sort 3300041119 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.G10 DOE Joint Genome Institute (JGI) 3300041119 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 261632 321 0 0 0 0 SRX9654792 Unrestricted 0.0 single_particle_sort 3300035944 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.E12 DOE Joint Genome Institute (JGI) 3300035944 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 2311795 2431 0 0 1 0 SRX8862646 Unrestricted 0.0 single_particle_sort 3300022091 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.I7 DOE Joint Genome Institute (JGI) 3300022091 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1073838 1039 0 0 0 0 SRX3998336 Unrestricted 0.0 single_particle_sort 3300023572 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.F13 DOE Joint Genome Institute (JGI) 3300023572 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 72458 89 0 0 0 0 SRX4547904 Unrestricted 0.0 single_particle_sort 3300015101 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-D07 DOE Joint Genome Institute (JGI) 3300015101 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 284494 335 0 0 0 0 SRX3578306 Unrestricted 0.0 single_particle_sort 3300051010 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_J7_SVS DOE Joint Genome Institute (JGI) 3300051010 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 90897 130 0 0 0 0 Restricted 0.0 single_particle_sort 3300038238 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.L6 DOE Joint Genome Institute (JGI) 3300038238 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 31639 48 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033477 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.G7 DOE Joint Genome Institute (JGI) 3300033477 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 1135606 1190 1 0 1 0 SRX7630273 Unrestricted 0.0 single_particle_sort 3300016192 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Parcubacteria bacterium SCGC_AG-278-D04 DOE Joint Genome Institute (JGI) 3300016192 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 126054 164 1 0 0 0 SRX3578352 Unrestricted 0.0 single_particle_sort 3300016118 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown archaeum SCGC_AG-582-K04 DOE Joint Genome Institute (JGI) 3300016118 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 468954 610 0 0 0 0 SRX3580232 Unrestricted 0.0 single_particle_sort 3300023370 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.I4 DOE Joint Genome Institute (JGI) 3300023370 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 530781 547 0 0 0 0 SRX4548973 Unrestricted 0.0 single_particle_sort 3300015994 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-G12 DOE Joint Genome Institute (JGI) 3300015994 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 364730 464 0 0 1 0 SRX3540190 Unrestricted 0.0 single_particle_sort 3300016513 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - archaeum_unknown_SCGC_AG-650-F14 DOE Joint Genome Institute (JGI) 3300016513 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 342106 442 0 0 0 0 SRX3784754 Unrestricted 0.0 single_particle_sort 3300033202 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.M19 DOE Joint Genome Institute (JGI) 3300033202 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 653736 693 0 0 0 0 SRX7630260 Unrestricted 0.0 single_particle_sort 3300016018 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-L05 DOE Joint Genome Institute (JGI) 3300016018 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 408245 491 0 0 1 0 SRX3563932 Unrestricted 0.0 single_particle_sort 3300016092 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-M06 DOE Joint Genome Institute (JGI) 3300016092 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 571767 572 0 0 0 0 SRX3578229 Unrestricted 0.0 single_particle_sort 3300033771 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_F6 DOE Joint Genome Institute (JGI) 3300033771 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 18892 26 0 0 0 0 SRX7525358 Unrestricted 0.0 single_particle_sort 3300051110 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_F23_SVS DOE Joint Genome Institute (JGI) 3300051110 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 72114 80 0 0 0 0 Restricted 0.0 single_particle_sort 3300018317 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Spirochaetes_bacterium_SCGC_AG-650-M23 DOE Joint Genome Institute (JGI) 3300018317 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1237504 1264 1 0 1 0 SRX3979971 Unrestricted 0.0 single_particle_sort 3300015001 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.N21 DOE Joint Genome Institute (JGI) 3300015001 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 248102 293 1 0 0 0 Restricted 0.0 single_particle_sort 3300038009 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.K20 DOE Joint Genome Institute (JGI) 3300038009 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 170137 196 0 0 0 0 SRX9409784 Unrestricted 0.0 single_particle_sort 3300033876 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.M20 DOE Joint Genome Institute (JGI) 3300033876 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 195002 224 0 0 0 0 SRX7626811 Unrestricted 0.0 single_particle_sort 3300021764 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.K4 DOE Joint Genome Institute (JGI) 3300021764 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 669763 790 0 0 0 0 SRX4009924 Unrestricted 0.0 single_particle_sort 3300041624 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.E12 DOE Joint Genome Institute (JGI) 3300041624 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 3486309 3509 1 0 1 0 SRX14835477 Unrestricted 0.0 single_particle_sort 3300033953 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.I13 DOE Joint Genome Institute (JGI) 3300033953 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 446047 480 1 0 1 0 SRX7630358 Unrestricted 0.0 single_particle_sort 3300023609 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.E11 DOE Joint Genome Institute (JGI) 3300023609 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 720033 825 0 0 0 0 SRX4415438 Unrestricted 0.0 single_particle_sort 3300050986 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_P13_SVS DOE Joint Genome Institute (JGI) 3300050986 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 47230 98 0 0 0 0 Restricted 0.0 single_particle_sort 3300050777 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_A8_SVS DOE Joint Genome Institute (JGI) 3300050777 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 108024 152 0 0 0 0 Restricted 0.0 single_particle_sort 3300038109 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .D11 DOE Joint Genome Institute (JGI) 3300038109 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 204104 302 0 0 0 0 SRX9411633 Unrestricted 0.0 single_particle_sort 3300033676 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P3_H12 DOE Joint Genome Institute (JGI) 3300033676 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 21004 49 0 0 0 0 SRX7531074 Unrestricted 0.0 single_particle_sort 3300018463 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Cyanobacteria_bacterium_SCGC_AG-650-K04 DOE Joint Genome Institute (JGI) 3300018463 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 2257019 2102 1 0 1 0 SRX3981519 Unrestricted 0.0 single_particle_sort 3300033843 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.G22 DOE Joint Genome Institute (JGI) 3300033843 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 514460 596 0 0 0 0 SRX7630469 Unrestricted 0.0 single_particle_sort 3300019524 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from Echinus Geyser water, Yellowstone National Park, Wyoming, United States - Geoarchaeota archaeon JGI 000156CP-E11 DOE Joint Genome Institute (JGI) 3300019524 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Acidic hot water 44.7225 -110.7014 1724363 1994 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300023809 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.F21 DOE Joint Genome Institute (JGI) 3300023809 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 402877 466 1 0 0 0 SRX4523976 Unrestricted 0.0 single_particle_sort 3300015661 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Sandy's Spring West, Nevada, USA - SSWsed.3.2015 0414 MDM2 SSWsed p3 16S.M19.double-peak DOE Joint Genome Institute (JGI) 3300015661 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 40.653 -119.3749 936503 1073 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300032536 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.J11 DOE Joint Genome Institute (JGI) 3300032536 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 384573 424 0 0 1 0 SRX6429087 Unrestricted 0.0 single_particle_sort 3300019917 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-M10 DOE Joint Genome Institute (JGI) 3300019917 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 504163 581 1 0 1 0 SRX4663360 Unrestricted 0.0 single_particle_sort 3300010840 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_48_SCGC_AG-159-P19 DOE Joint Genome Institute (JGI) 3300010840 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 775984 838 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300023931 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.G21 DOE Joint Genome Institute (JGI) 3300023931 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 1048055 1164 0 0 0 0 SRX4548065 Unrestricted 0.0 single_particle_sort 3300037934 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.F12 DOE Joint Genome Institute (JGI) 3300037934 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 472121 526 1 0 1 0 SRX9410594 Unrestricted 0.0 single_particle_sort 3300024071 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.J12 DOE Joint Genome Institute (JGI) 3300024071 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 317482 368 1 0 1 0 SRX4526111 Unrestricted 0.0 single_particle_sort 3300015861 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-H11 DOE Joint Genome Institute (JGI) 3300015861 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 167651 214 0 0 0 0 SRX3540257 Unrestricted 0.0 single_particle_sort 3300019442 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent microbial mat, Guaymas Basin, Mexico - 6D_4862_10_16 DOE Joint Genome Institute (JGI) 3300019442 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.001 -110.5998 8088422 8905 0 0 0 0 SRX3974059 Unrestricted 0.0 single_particle_sort 3300033614 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P1_M7 DOE Joint Genome Institute (JGI) 3300033614 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 39375 53 0 0 0 0 SRX7525393 Unrestricted 0.0 single_particle_sort 3300014418 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.L17 DOE Joint Genome Institute (JGI) 3300014418 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 629346 813 1 0 0 0 SRX3366665 Unrestricted 0.0 single_particle_sort 3300021996 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Atribacteria bacterium JGI MDM2 LBsed72-2-I15 DOE Joint Genome Institute (JGI) 3300021996 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment freshwater sediment 53.7598 107.9791 416479 494 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035920 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_B13 DOE Joint Genome Institute (JGI) 3300035920 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 169980 210 0 0 0 0 SRX10045585 Unrestricted 0.0 single_particle_sort 3300016631 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, USA - Aminicenantes_bacterium_SCGC_AG-640-I15 DOE Joint Genome Institute (JGI) 3300016631 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Acidic Artesian spring Sediment Hot spring sediment 34.9956 -98.6889 7.5 3546352 3255 1 0 0 0 SRX3784230 Unrestricted 0.0 single_particle_sort 3300035935 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.K13 DOE Joint Genome Institute (JGI) 3300035935 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1393983 1521 1 0 0 0 SRX8862506 Unrestricted 0.0 single_particle_sort 3300015766 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-K16 DOE Joint Genome Institute (JGI) 3300015766 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 147835 218 0 0 0 0 SRX3562997 Unrestricted 0.0 single_particle_sort 3300018137 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_N7 DOE Joint Genome Institute (JGI) 3300018137 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 409332 423 0 0 0 0 SRX4647815 Unrestricted 0.0 single_particle_sort 3300016544 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from underground thermal water from 5P borehole, Tomsk, Russia - unknown_bacterium_SCGC_AG-716-B22 DOE Joint Genome Institute (JGI) 3300016544 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole Groundwater 58.0758 82.8374 7.49-7.6 741650 876 1 0 1 0 SRX3783256 Unrestricted 0.0 single_particle_sort 3300022246 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Acetothermia_bacterium_SCGC_AH-151-F20 Bigelow Laboratory for Ocean Sciences 3300022246 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 826508 884 1 0 0 0 0.0 single_particle_sort 3300035967 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.L14 DOE Joint Genome Institute (JGI) 3300035967 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1190928 1263 0 0 0 0 SRX8862704 Unrestricted 0.0 single_particle_sort 3300018165 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_L4 DOE Joint Genome Institute (JGI) 3300018165 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 1131368 798 1 0 0 0 SRX4647107 Unrestricted 0.0 single_particle_sort 3300016338 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-N11 DOE Joint Genome Institute (JGI) 3300016338 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 728447 810 0 0 0 0 SRX3560784 Unrestricted 0.0 single_particle_sort 3300022273 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - unknown_bacterium_SCGC_AH-147-A14 Bigelow Laboratory for Ocean Sciences 3300022273 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 738400 674 0 0 1 0 0.0 single_particle_sort 3300022632 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Rhodospirillales bacterium JGI PCGPRD042217_3 DOE Joint Genome Institute (JGI) 3300022632 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 727304 849 1 0 1 0 SRX4414621 Unrestricted 0.0 single_particle_sort 3300034540 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.I18 DOE Joint Genome Institute (JGI) 3300034540 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1429514 1514 0 0 0 0 SRX8391067 Unrestricted 0.0 single_particle_sort 3300021648 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.M22 DOE Joint Genome Institute (JGI) 3300021648 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 84146 117 0 0 0 0 SRX4009917 Unrestricted 0.0 single_particle_sort 3300033499 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.D12 DOE Joint Genome Institute (JGI) 3300033499 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 404224 453 0 0 0 0 SRX7630340 Unrestricted 0.0 single_particle_sort 3300014392 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.H13 DOE Joint Genome Institute (JGI) 3300014392 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 389617 419 0 0 1 0 SRX3368447 Unrestricted 0.0 single_particle_sort 3300041339 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.I12 DOE Joint Genome Institute (JGI) 3300041339 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2199611 2067 0 0 0 0 SRX9646932 Unrestricted 0.0 single_particle_sort 3300015224 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - unknown bacterium SCGC_AG-290-I03 DOE Joint Genome Institute (JGI) 3300015224 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 462484 538 0 0 1 0 SRX3578556 Unrestricted 0.0 single_particle_sort 3300015468 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown bacterium SCGC_AG-122-G21 DOE Joint Genome Institute (JGI) 3300015468 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 188988 207 0 0 0 0 SRX3573085 Unrestricted 0.0 single_particle_sort 3300035913 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_B9 DOE Joint Genome Institute (JGI) 3300035913 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 56019 79 0 0 0 0 SRX10045276 Unrestricted 0.0 single_particle_sort 3300041640 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.J7 DOE Joint Genome Institute (JGI) 3300041640 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 3547025 3551 1 0 2 0 SRX14836436 Unrestricted 0.0 single_particle_sort 3300071227 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_WGAX_B12_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071227 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 1625084 1569 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300019540 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-B09 DOE Joint Genome Institute (JGI) 3300019540 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 30507 33 0 0 0 0 SRX3556440 Unrestricted 0.0 single_particle_sort 3300049942 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_F22_SVS DOE Joint Genome Institute (JGI) 3300049942 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 57176 102 0 0 0 0 Restricted 0.0 single_particle_sort 3300050925 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-J04 DOE Joint Genome Institute (JGI) 3300050925 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 804827 792 1 0 0 0 Restricted 0.0 single_particle_sort 3300022975 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - Berkelbacteria bacterium JGI GBS_7_K12 DOE Joint Genome Institute (JGI) 3300022975 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 427354 527 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300050930 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-L06 DOE Joint Genome Institute (JGI) 3300050930 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 213058 287 0 0 1 0 Restricted 0.0 single_particle_sort 3300071260 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_WGAX_A11_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071260 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 1544643 1548 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300021747 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.G11 DOE Joint Genome Institute (JGI) 3300021747 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 548353 661 0 0 0 0 SRX4009953 Unrestricted 0.0 single_particle_sort 3300038222 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.H10 DOE Joint Genome Institute (JGI) 3300038222 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 1029512 1171 1 0 1 0 SRX9411051 Unrestricted 0.0 single_particle_sort 3300016438 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Omnitrophica bacterium SCGC_AG-582-G18 DOE Joint Genome Institute (JGI) 3300016438 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 1271155 1259 1 0 1 0 SRX3579960 Unrestricted 0.0 single_particle_sort 3300035872 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.E13 DOE Joint Genome Institute (JGI) 3300035872 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 900871 986 1 0 1 0 SRX8857249 Unrestricted 0.0 single_particle_sort 3300021983 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - Acetothermia bacterium JGI MDM2 NGM80-1-F09 DOE Joint Genome Institute (JGI) 3300021983 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 193785 246 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300050799 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_K19_SVS DOE Joint Genome Institute (JGI) 3300050799 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 45823 56 0 0 0 0 Restricted 0.0 single_particle_sort 3300019963 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-G9 DOE Joint Genome Institute (JGI) 3300019963 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 428963 440 1 0 1 0 SRX4655806 Unrestricted 0.0 single_particle_sort 3300015882 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-O03 DOE Joint Genome Institute (JGI) 3300015882 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 231501 279 0 0 0 0 SRX3580283 Unrestricted 0.0 single_particle_sort 3300035906 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.D18 DOE Joint Genome Institute (JGI) 3300035906 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 588256 703 0 0 0 0 SRX8899850 Unrestricted 0.0 single_particle_sort 3300022021 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - Acetothermia bacterium JGI MDM2 NGM80-1-F13 DOE Joint Genome Institute (JGI) 3300022021 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 581576 664 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300015401 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Omnitrophica bacterium SCGC_AG-128-N16 DOE Joint Genome Institute (JGI) 3300015401 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 841787 834 1 0 0 0 SRX3577083 Unrestricted 0.0 single_particle_sort 3300016418 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Omnitrophica bacterium SCGC_AG-574-F19 DOE Joint Genome Institute (JGI) 3300016418 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 1221413 1101 0 0 0 0 SRX3578833 Unrestricted 0.0 single_particle_sort 3300016492 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-B02 DOE Joint Genome Institute (JGI) 3300016492 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 143189 150 0 0 0 0 SRX3784696 Unrestricted 0.0 single_particle_sort 3300050910 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-B11 DOE Joint Genome Institute (JGI) 3300050910 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 988647 1095 0 0 0 0 Restricted 0.0 single_particle_sort 3300016122 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG-582-D23 DOE Joint Genome Institute (JGI) 3300016122 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 551468 624 1 0 1 0 SRX3580198 Unrestricted 0.0 single_particle_sort 3300015707 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-E17 DOE Joint Genome Institute (JGI) 3300015707 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 117667 160 0 0 0 0 SRX3561039 Unrestricted 0.0 single_particle_sort 3300015924 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-G09 DOE Joint Genome Institute (JGI) 3300015924 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 306019 380 0 0 0 0 SRX3548482 Unrestricted 0.0 single_particle_sort 3300041250 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.J11 DOE Joint Genome Institute (JGI) 3300041250 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 3601658 3572 0 0 0 0 SRX9651700 Unrestricted 0.0 single_particle_sort 3300022121 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.D16 DOE Joint Genome Institute (JGI) 3300022121 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 2319544 2278 1 0 1 0 SRX3998265 Unrestricted 0.0 single_particle_sort 3300016022 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Microgenometes bacterium SCGC_AG-274-P09 DOE Joint Genome Institute (JGI) 3300016022 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 425131 494 1 0 1 0 SRX3578308 Unrestricted 0.0 single_particle_sort 3300035933 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.K12 DOE Joint Genome Institute (JGI) 3300035933 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1007411 1095 0 0 0 0 SRX8862489 Unrestricted 0.0 single_particle_sort 3300032505 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.L16 DOE Joint Genome Institute (JGI) 3300032505 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 657777 690 0 0 0 0 SRX6429446 Unrestricted 0.0 single_particle_sort 3300041319 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.I8 DOE Joint Genome Institute (JGI) 3300041319 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 699466 795 0 0 0 0 SRX9646835 Unrestricted 0.0 single_particle_sort 3300018163 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_N18 DOE Joint Genome Institute (JGI) 3300018163 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 747538 767 0 0 0 0 SRX4646800 Unrestricted 0.0 single_particle_sort 3300019594 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-F10 DOE Joint Genome Institute (JGI) 3300019594 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 58233 72 0 0 0 0 SRX3562886 Unrestricted 0.0 single_particle_sort 3300022275 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Acetothermia_bacterium_SCGC_AH-151-L10 Bigelow Laboratory for Ocean Sciences 3300022275 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 731165 776 1 0 1 0 0.0 single_particle_sort 3300022812 *Microbiome Permanent Draft Subsurface sediment and ocean crust microbial communities from Atlantis Massif Sorted cell/s from oceanic crust serpentine and harzburgite in Atlantis Massif, mid-Atlantic ridge, Atlantic Ocean - 68B1R1_SYBR_sort Marine Biological Laboratory 3300022812 Metagenome - Single Particle Sort SPAdes v. 3.9.0 released by JGI data releasing policy No Yes jackiegoordial@gmail.com Jackie Goordial No Environmental Aquatic Deep subsurface Marine Rock Oceanic Crust 30.12983 -42.122 1.44 1498050 2478 2 0 4 0 0.0 single_particle_sort 3300035915 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_H11 DOE Joint Genome Institute (JGI) 3300035915 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 449657 445 0 0 1 0 SRX10045552 Unrestricted 0.0 single_particle_sort 3300016590 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, USA - Caldithrix_bacterium_SCGC_AG-640-A22 DOE Joint Genome Institute (JGI) 3300016590 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas Yes 30902854.0 Environmental Aquatic Acidic Artesian spring Sediment Hot spring sediment 34.9956 -98.6889 7.5 2387202 1993 1 0 0 0 SRX3784217 Unrestricted 0.0 single_particle_sort 3300018117 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - uncultured microorganism JGI MDM2 ZSSED05-2-G14 DOE Joint Genome Institute (JGI) 3300018117 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 215118 285 0 0 0 0 SRX3917497 Unrestricted 0.0 single_particle_sort 3300016611 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Caldtihrix_bacterium_SCGC_AG-636-I10 DOE Joint Genome Institute (JGI) 3300016611 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 2871163 2431 1 0 1 0 SRX3784356 Unrestricted 0.0 single_particle_sort 3300022612 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Rhodospirillales bacterium JGI PCGPRD042217_10 DOE Joint Genome Institute (JGI) 3300022612 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 346226 442 0 0 2 0 SRX4414702 Unrestricted 0.0 single_particle_sort 3300024799 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-C09 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024799 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 178139 246 0 0 0 0 0.0 single_particle_sort 3300050923 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-I07 DOE Joint Genome Institute (JGI) 3300050923 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 636893 689 1 0 1 0 Restricted 0.0 single_particle_sort 3300016392 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown archaeum SCGC_AG-278-N08 DOE Joint Genome Institute (JGI) 3300016392 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 774479 942 1 0 1 0 SRX3578494 Unrestricted 0.0 single_particle_sort 3300015808 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Microgenometes bacterium SCGC_AG-274-K20 DOE Joint Genome Institute (JGI) 3300015808 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 247803 280 1 0 1 0 SRX3578277 Unrestricted 0.0 single_particle_sort 3300034594 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.L4 DOE Joint Genome Institute (JGI) 3300034594 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1709408 1766 0 0 0 0 SRX8394687 Unrestricted 0.0 single_particle_sort 3300016318 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-F13 DOE Joint Genome Institute (JGI) 3300016318 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 662819 771 0 0 0 0 SRX3551012 Unrestricted 0.0 single_particle_sort 3300032350 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.I12 DOE Joint Genome Institute (JGI) 3300032350 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 546538 552 1 0 2 0 SRX6433377 Unrestricted 0.0 single_particle_sort 3300023742 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.05.I15 DOE Joint Genome Institute (JGI) 3300023742 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 87331 122 0 0 0 0 SRX4391017 Unrestricted 0.0 single_particle_sort 3300023911 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.F8 DOE Joint Genome Institute (JGI) 3300023911 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 976075 1001 1 0 0 0 SRX4525773 Unrestricted 0.0 single_particle_sort 3300033834 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.J20 DOE Joint Genome Institute (JGI) 3300033834 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 340324 377 1 0 1 0 SRX7630456 Unrestricted 0.0 single_particle_sort 3300022973 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.G14 DOE Joint Genome Institute (JGI) 3300022973 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 425634 508 0 0 0 0 SRX4416809 Unrestricted 0.0 single_particle_sort 3300035267 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_F8 DOE Joint Genome Institute (JGI) 3300035267 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 168791 200 1 0 0 0 SRX9537911 Unrestricted 0.0 single_particle_sort 3300014438 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.I16 DOE Joint Genome Institute (JGI) 3300014438 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 821457 1027 1 0 1 0 SRX3367200 Unrestricted 0.0 single_particle_sort 3300021985 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - unclassified bacterium JGI MDM2 NGM80-2-H19 DOE Joint Genome Institute (JGI) 3300021985 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 37465 60 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300022946 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.K13 DOE Joint Genome Institute (JGI) 3300022946 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 104335 121 0 0 0 0 SRX4418809 Unrestricted 0.0 single_particle_sort 3300019965 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-D12 DOE Joint Genome Institute (JGI) 3300019965 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 343967 382 0 0 0 0 SRX4653764 Unrestricted 0.0 single_particle_sort 3300037914 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.H15 DOE Joint Genome Institute (JGI) 3300037914 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 128160 180 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300024678 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-I08 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024678 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 89612 103 0 0 0 0 0.0 single_particle_sort 3300033902 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.K15 DOE Joint Genome Institute (JGI) 3300033902 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 294766 339 1 0 1 0 SRX7626537 Unrestricted 0.0 single_particle_sort 3300051125 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_O20_SVS DOE Joint Genome Institute (JGI) 3300051125 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 67452 80 0 0 0 0 Restricted 0.0 single_particle_sort 3300032574 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.N20 DOE Joint Genome Institute (JGI) 3300032574 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 1158434 1116 0 0 0 0 SRX6428923 Unrestricted 0.0 single_particle_sort 3300033199 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.J20 DOE Joint Genome Institute (JGI) 3300033199 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 583940 532 0 0 0 0 SRX7630257 Unrestricted 0.0 single_particle_sort 3300037943 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.M13 DOE Joint Genome Institute (JGI) 3300037943 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 39514 56 0 0 0 0 SRX9410605 Unrestricted 0.0 single_particle_sort 3300015563 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown bacterium SCGC_AG-122-B22 DOE Joint Genome Institute (JGI) 3300015563 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 761934 711 1 0 2 0 SRX3571928 Unrestricted 0.0 single_particle_sort 3300026589 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-A21 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026589 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 106701 105 0 0 0 0 0.0 single_particle_sort 3300032706 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.G19 DOE Joint Genome Institute (JGI) 3300032706 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 425595 487 0 0 0 0 SRX6427734 Unrestricted 0.0 single_particle_sort 3300024371 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.F18 DOE Joint Genome Institute (JGI) 3300024371 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 65585 70 0 0 0 0 SRX4547809 Unrestricted 0.0 single_particle_sort 3300016506 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from underground thermal water from 5P borehole, Tomsk, Russia - Microgenometes_bacterium_SCGC_AG-717-P02 DOE Joint Genome Institute (JGI) 3300016506 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole Groundwater 58.0758 82.8374 7.49-7.6 331192 391 1 0 1 0 SRX3783258 Unrestricted 0.0 single_particle_sort 3300024878 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.E19 DOE Joint Genome Institute (JGI) 3300024878 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 320176 371 0 0 0 0 SRX4389906 Unrestricted 0.0 single_particle_sort 3300037976 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .D5 DOE Joint Genome Institute (JGI) 3300037976 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 312403 401 0 0 0 0 SRX9411504 Unrestricted 0.0 single_particle_sort 3300050995 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 173_L14_SVS DOE Joint Genome Institute (JGI) 3300050995 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 63315 108 0 0 0 0 Restricted 0.0 single_particle_sort 3300016209 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-H17 DOE Joint Genome Institute (JGI) 3300016209 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 298551 358 0 0 0 0 SRX3562938 Unrestricted 0.0 single_particle_sort 3300016138 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-H19 DOE Joint Genome Institute (JGI) 3300016138 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 538150 645 1 0 0 0 SRX3563621 Unrestricted 0.0 single_particle_sort 3300018365 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_M20 DOE Joint Genome Institute (JGI) 3300018365 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 1653083 1689 0 0 0 0 SRX4646617 Unrestricted 0.0 single_particle_sort 3300015850 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Peregrinibacteria_bacterium_SCGC_AG-582-J18 DOE Joint Genome Institute (JGI) 3300015850 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 117131 154 0 0 0 0 SRX3580012 Unrestricted 0.0 single_particle_sort 3300038218 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.I12 DOE Joint Genome Institute (JGI) 3300038218 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 97041 124 0 0 0 0 SRX9411053 Unrestricted 0.0 single_particle_sort 3300033253 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.H19 DOE Joint Genome Institute (JGI) 3300033253 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 238457 289 0 0 0 0 SRX7630657 Unrestricted 0.0 single_particle_sort 3300051130 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_K5_SVS DOE Joint Genome Institute (JGI) 3300051130 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 63180 95 0 0 0 0 Restricted 0.0 single_particle_sort 3300032601 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.G19 DOE Joint Genome Institute (JGI) 3300032601 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 1087961 1018 0 0 0 0 SRX6429428 Unrestricted 0.0 single_particle_sort 3300018337 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_B4 DOE Joint Genome Institute (JGI) 3300018337 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1456967 1429 1 0 1 0 SRX4650359 Unrestricted 0.0 single_particle_sort 3300015650 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Gongxiaoshe hot spring sediment, Tengchong, China - GXS.2.2014 1201 MDM2 GXS p2 16S.D6.double-seq DOE Joint Genome Institute (JGI) 3300015650 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 25.4401 98.4408 725204 776 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300016533 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from underground thermal water from 5P borehole, Tomsk, Russia - Microgenometes_bacterium_SCGC_AG-717-I05 DOE Joint Genome Institute (JGI) 3300016533 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole Groundwater 58.0758 82.8374 7.49-7.6 603022 680 0 0 1 0 SRX3782166 Unrestricted 0.0 single_particle_sort 3300016038 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG-582-O06 DOE Joint Genome Institute (JGI) 3300016038 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 430101 520 1 0 1 0 SRX3580059 Unrestricted 0.0 single_particle_sort 3300023369 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.G17 DOE Joint Genome Institute (JGI) 3300023369 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 1392405 1419 1 0 1 0 SRX4548791 Unrestricted 0.0 single_particle_sort 3300015940 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-F21 DOE Joint Genome Institute (JGI) 3300015940 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 314473 399 0 0 0 0 SRX3563244 Unrestricted 0.0 single_particle_sort 3300035739 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.K18 DOE Joint Genome Institute (JGI) 3300035739 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1391997 1481 0 0 0 0 SRX8857430 Unrestricted 0.0 single_particle_sort 3300018242 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-A21 DOE Joint Genome Institute (JGI) 3300018242 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 757790 806 0 0 1 0 SRX3978137 Unrestricted 0.0 single_particle_sort 3300071251 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_G04_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071251 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 2246785 2647 0 0 4 0 Unrestricted 0.0 single_particle_sort 3300041139 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.K9 DOE Joint Genome Institute (JGI) 3300041139 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1375192 1565 0 0 0 0 SRX9669996 Unrestricted 0.0 single_particle_sort 3300032715 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.N20 DOE Joint Genome Institute (JGI) 3300032715 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 1080005 1588 0 0 0 0 SRX6449961 Unrestricted 0.0 single_particle_sort 3300033329 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.M10 DOE Joint Genome Institute (JGI) 3300033329 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 176538 228 0 0 0 0 SRX7630585 Unrestricted 0.0 single_particle_sort 3300014422 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.N09 DOE Joint Genome Institute (JGI) 3300014422 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 664070 859 1 0 1 0 SRX3368150 Unrestricted 0.0 single_particle_sort 3300016515 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from underground thermal water from 5P borehole, Tomsk, Russia - Microgenometes_bacterium_SCGC_AG-716-L14 DOE Joint Genome Institute (JGI) 3300016515 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole Groundwater 58.0758 82.8374 7.49-7.6 417817 463 1 0 1 0 SRX3782169 Unrestricted 0.0 single_particle_sort 3300024777 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-F07 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024777 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 171349 203 0 0 0 0 0.0 single_particle_sort 3300035990 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.E6 DOE Joint Genome Institute (JGI) 3300035990 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 834565 881 1 0 1 0 SRX8855407 Unrestricted 0.0 single_particle_sort 3300023469 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.D21 DOE Joint Genome Institute (JGI) 3300023469 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 1199570 1331 0 0 0 0 SRX4548525 Unrestricted 0.0 single_particle_sort 3300015517 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-K14 DOE Joint Genome Institute (JGI) 3300015517 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 297538 413 0 0 0 0 SRX3549978 Unrestricted 0.0 single_particle_sort 3300033955 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.D14 DOE Joint Genome Institute (JGI) 3300033955 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 704548 767 0 0 0 0 SRX7630364 Unrestricted 0.0 single_particle_sort 3300018437 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_I12 DOE Joint Genome Institute (JGI) 3300018437 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 688609 681 1 0 1 0 SRX4651169 Unrestricted 0.0 single_particle_sort 3300041208 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.E22 DOE Joint Genome Institute (JGI) 3300041208 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2134438 1933 0 0 0 0 SRX9657925 Unrestricted 0.0 single_particle_sort 3300033288 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.N14 DOE Joint Genome Institute (JGI) 3300033288 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 149676 184 0 0 0 0 SRX7630610 Unrestricted 0.0 single_particle_sort 3300033845 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.M4 DOE Joint Genome Institute (JGI) 3300033845 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 252477 275 0 0 0 0 SRX7626143 Unrestricted 0.0 single_particle_sort 3300023848 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.L9 DOE Joint Genome Institute (JGI) 3300023848 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 598023 654 0 0 0 0 SRX4548072 Unrestricted 0.0 single_particle_sort 3300015025 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.M20 DOE Joint Genome Institute (JGI) 3300015025 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 375346 442 1 0 1 0 Restricted 0.0 single_particle_sort 3300023341 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.N14 DOE Joint Genome Institute (JGI) 3300023341 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 1016010 995 1 0 1 0 SRX4548845 Unrestricted 0.0 single_particle_sort 3300010714 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.L15 DOE Joint Genome Institute (JGI) 3300010714 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 22719 39 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300051068 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_M15_SVS DOE Joint Genome Institute (JGI) 3300051068 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 20724 37 0 0 0 0 Restricted 0.0 single_particle_sort 3300016160 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-N13 DOE Joint Genome Institute (JGI) 3300016160 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 584624 674 0 0 0 0 SRX3563038 Unrestricted 0.0 single_particle_sort 3300013505 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.N15 DOE Joint Genome Institute (JGI) 3300013505 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1328805 1537 1 0 1 0 SRX3366791 Unrestricted 0.0 single_particle_sort 3300035829 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0815.Sybr.01.D15 DOE Joint Genome Institute (JGI) 3300035829 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 106939 131 0 0 0 0 SRX8894436 Unrestricted 0.0 single_particle_sort 3300023648 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.I10 DOE Joint Genome Institute (JGI) 3300023648 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 189864 227 0 0 0 0 SRX4415639 Unrestricted 0.0 single_particle_sort 3300015125 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - Omnitrophica archaeum SCGC_AG-290-F19 DOE Joint Genome Institute (JGI) 3300015125 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 516716 545 1 0 1 0 SRX3578559 Unrestricted 0.0 single_particle_sort 3300023958 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.N20 DOE Joint Genome Institute (JGI) 3300023958 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 1464514 1401 0 0 0 0 SRX4548077 Unrestricted 0.0 single_particle_sort 3300018289 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_D13 DOE Joint Genome Institute (JGI) 3300018289 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1180805 1125 0 0 0 0 SRX4651001 Unrestricted 0.0 single_particle_sort 3300019675 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-574-K03 DOE Joint Genome Institute (JGI) 3300019675 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 282336 362 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300016060 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-J05 DOE Joint Genome Institute (JGI) 3300016060 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 424091 544 0 0 0 0 SRX3562956 Unrestricted 0.0 single_particle_sort 3300015495 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - Parcubacteria bacterium SCGC_AG-122-O05 DOE Joint Genome Institute (JGI) 3300015495 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 275573 314 1 0 2 0 SRX3574141 Unrestricted 0.0 single_particle_sort 3300038048 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.H19 DOE Joint Genome Institute (JGI) 3300038048 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 925690 1221 0 0 0 0 SRX9411291 Unrestricted 0.0 single_particle_sort 3300024394 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.I20 DOE Joint Genome Institute (JGI) 3300024394 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 328712 331 0 0 0 0 SRX4547823 Unrestricted 0.0 single_particle_sort 3300024619 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-G05 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024619 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 39301 58 0 0 0 0 0.0 single_particle_sort 3300016127 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-K09 DOE Joint Genome Institute (JGI) 3300016127 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 562270 629 1 0 0 0 SRX3563018 Unrestricted 0.0 single_particle_sort 3300035281 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_J11 DOE Joint Genome Institute (JGI) 3300035281 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 55601 69 0 0 1 0 SRX9539548 Unrestricted 0.0 single_particle_sort 3300015130 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - unknown bacterium SCGC_AG-290-P13 DOE Joint Genome Institute (JGI) 3300015130 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 403458 577 0 0 0 0 SRX3578814 Unrestricted 0.0 single_particle_sort 3300016351 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown archaeum SCGC_AG-582-C16 DOE Joint Genome Institute (JGI) 3300016351 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 761255 842 1 0 0 0 SRX3579948 Unrestricted 0.0 single_particle_sort 3300013082 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.N04 DOE Joint Genome Institute (JGI) 3300013082 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 641380 813 1 0 0 0 SRX3368149 Unrestricted 0.0 single_particle_sort 3300016497 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-A05 DOE Joint Genome Institute (JGI) 3300016497 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 262813 252 0 0 0 0 SRX3784699 Unrestricted 0.0 single_particle_sort 3300024754 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-F10 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024754 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 146839 171 0 0 0 0 0.0 single_particle_sort 3300016027 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown bacterium SCGC_AG-657-K20 DOE Joint Genome Institute (JGI) 3300016027 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 503061 505 0 0 0 0 SRX3601460 Unrestricted 0.0 single_particle_sort 3300023996 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.H22 DOE Joint Genome Institute (JGI) 3300023996 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 2269530 2248 1 0 1 0 SRX4547508 Unrestricted 0.0 single_particle_sort 3300024819 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-G04 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024819 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 229489 298 0 0 0 0 0.0 single_particle_sort 3300018328 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Acidobacteria_bacterium_SCGC_AG-650-K09 DOE Joint Genome Institute (JGI) 3300018328 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1461777 1374 1 0 1 0 SRX3974432 Unrestricted 0.0 single_particle_sort 3300015271 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown bacterium SCGC_AG-122-G08 DOE Joint Genome Institute (JGI) 3300015271 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 452809 477 0 0 1 0 SRX3573069 Unrestricted 0.0 single_particle_sort 3300015702 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-D15 DOE Joint Genome Institute (JGI) 3300015702 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 106952 131 0 0 0 0 SRX3563236 Unrestricted 0.0 single_particle_sort 3300034559 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.C16 DOE Joint Genome Institute (JGI) 3300034559 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 779868 824 0 0 0 0 SRX8393457 Unrestricted 0.0 single_particle_sort 3300015030 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.D16 DOE Joint Genome Institute (JGI) 3300015030 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 383350 462 1 0 1 0 Restricted 0.0 single_particle_sort 3300035262 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_N5 DOE Joint Genome Institute (JGI) 3300035262 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 178399 206 0 0 0 0 SRX9537811 Unrestricted 0.0 single_particle_sort 3300015395 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Omnitrophica bacterium SCGC_AG-128-E20 DOE Joint Genome Institute (JGI) 3300015395 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 774237 760 1 0 1 0 SRX3574348 Unrestricted 0.0 single_particle_sort 3300018156 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-P10 DOE Joint Genome Institute (JGI) 3300018156 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 813037 757 0 0 0 0 SRX3974896 Unrestricted 0.0 single_particle_sort 3300023747 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.05.G9 DOE Joint Genome Institute (JGI) 3300023747 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 183944 161 0 0 0 0 SRX4390958 Unrestricted 0.0 single_particle_sort 3300015755 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-I09 DOE Joint Genome Institute (JGI) 3300015755 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 152467 199 0 0 0 0 SRX3560710 Unrestricted 0.0 single_particle_sort 3300036741 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.K12.redo DOE Joint Genome Institute (JGI) 3300036741 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 554789 611 1 0 1 0 SRX8909138 Unrestricted 0.0 single_particle_sort 3300023983 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.I14 DOE Joint Genome Institute (JGI) 3300023983 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 1823971 1952 1 0 1 0 SRX4523609 Unrestricted 0.0 single_particle_sort 3300019559 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.J20 DOE Joint Genome Institute (JGI) 3300019559 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Sediment, Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 35044 47 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300018198 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Syntrophaceae_bacterium_SCGC_AG-650-L13 DOE Joint Genome Institute (JGI) 3300018198 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 506165 482 0 0 0 0 SRX3979896 Unrestricted 0.0 single_particle_sort 3300071309 *Microbiome Permanent Draft Comparing whole genome amplification chemistries for bacterial single cell genomics Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - scBac_Watchmaker_EnviBac_sc_well6E_S85 Stanford University 3300071309 Metagenome - Single Particle Sort Spades v. 3.15.3 released per request -- IMGSUPP-4358 No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 620632 734 1 0 0 0 0.0 single_particle_sort 3300018112 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_L11 DOE Joint Genome Institute (JGI) 3300018112 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 287119 294 0 0 0 0 SRX4647842 Unrestricted 0.0 single_particle_sort 3300032557 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.M12 DOE Joint Genome Institute (JGI) 3300032557 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 660517 711 0 0 1 0 SRX6427195 Unrestricted 0.0 single_particle_sort 3300022080 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Norwegian Sea - JL-ETNP-Z39_bacterium_AG-205-C04 DOE Joint Genome Institute (JGI) 3300022080 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Sediment Marine Unclassified marine sediment 73.3565 0.1223 783252 715 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300032623 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.F18 DOE Joint Genome Institute (JGI) 3300032623 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 1340522 1252 1 0 1 0 SRX6426229 Unrestricted 0.0 single_particle_sort 3300018264 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_K15 DOE Joint Genome Institute (JGI) 3300018264 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 971191 953 0 0 0 0 SRX4652732 Unrestricted 0.0 single_particle_sort 3300016397 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Microgenometes bacterium SCGC_AG-274-O16 DOE Joint Genome Institute (JGI) 3300016397 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 909103 970 1 0 1 0 SRX3578305 Unrestricted 0.0 single_particle_sort 3300024124 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Pseudomonas bacterium JGI PFNR15_D18 DOE Joint Genome Institute (JGI) 3300024124 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 33420 39 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300018098 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - uncultured microorganism JGI MDM2 ZSSED05-1-L19 DOE Joint Genome Institute (JGI) 3300018098 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 107937 151 0 0 0 0 SRX3917486 Unrestricted 0.0 single_particle_sort 3300050839 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_H7_SVS DOE Joint Genome Institute (JGI) 3300050839 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 112592 178 0 0 0 0 Restricted 0.0 single_particle_sort 3300022617 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Rhodospirillales bacterium JGI PCGPRD042217_2 DOE Joint Genome Institute (JGI) 3300022617 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 449763 530 1 0 1 0 SRX4414617 Unrestricted 0.0 single_particle_sort 3300050901 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_J19_SVS DOE Joint Genome Institute (JGI) 3300050901 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 91265 124 0 0 0 0 Restricted 0.0 single_particle_sort 3300019571 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-F09 DOE Joint Genome Institute (JGI) 3300019571 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 41122 53 0 0 1 0 SRX3560307 Unrestricted 0.0 single_particle_sort 3300041378 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.I7 DOE Joint Genome Institute (JGI) 3300041378 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 3623147 3461 0 0 0 0 SRX9645062 Unrestricted 0.0 single_particle_sort 3300015410 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Omnitrophica bacterium SCGC_AG-128-O10 DOE Joint Genome Institute (JGI) 3300015410 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 1019383 979 1 0 1 0 SRX3577089 Unrestricted 0.0 single_particle_sort 3300018332 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_J15 DOE Joint Genome Institute (JGI) 3300018332 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1360488 1392 0 0 1 0 SRX4652651 Unrestricted 0.0 single_particle_sort 3300019804 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-J21 DOE Joint Genome Institute (JGI) 3300019804 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 323419 418 1 0 1 0 SRX4663328 Unrestricted 0.0 single_particle_sort 3300023529 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.J11 DOE Joint Genome Institute (JGI) 3300023529 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 1175742 1151 0 0 0 0 SRX4548455 Unrestricted 0.0 single_particle_sort 3300016479 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Aminicenantes_bacterium_SCGC_AG-636-N18 DOE Joint Genome Institute (JGI) 3300016479 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Sediment Freshwater Unclassified Freshwater sediment 53.7598 107.9791 7.32 1573999 1539 1 0 1 0 SRX3784470 Unrestricted 0.0 single_particle_sort 3300071292 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_edMDA_B04_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071292 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 735396 796 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300071218 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_C06_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071218 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 2565607 2684 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300032695 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.L11 DOE Joint Genome Institute (JGI) 3300032695 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 364942 362 0 0 1 0 SRX6429249 Unrestricted 0.0 single_particle_sort 3300014327 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.D21 DOE Joint Genome Institute (JGI) 3300014327 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 388897 416 1 0 1 0 SRX3366846 Unrestricted 0.0 single_particle_sort 3300033907 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.E16 DOE Joint Genome Institute (JGI) 3300033907 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 98215 79 0 0 0 0 SRX7626528 Unrestricted 0.0 single_particle_sort 3300019604 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-G05 DOE Joint Genome Institute (JGI) 3300019604 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 63864 79 0 0 0 0 SRX3549984 Unrestricted 0.0 single_particle_sort 3300033584 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P1_N9 DOE Joint Genome Institute (JGI) 3300033584 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 14249 19 0 0 0 0 SRX7530065 Unrestricted 0.0 single_particle_sort 3300023789 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.D15 DOE Joint Genome Institute (JGI) 3300023789 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 296980 354 0 0 0 0 SRX4548058 Unrestricted 0.0 single_particle_sort 3300021609 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.K6 DOE Joint Genome Institute (JGI) 3300021609 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 21825 30 0 0 0 0 SRX4009927 Unrestricted 0.0 single_particle_sort 3300015512 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-I05 DOE Joint Genome Institute (JGI) 3300015512 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 292945 396 0 0 0 0 SRX3560330 Unrestricted 0.0 single_particle_sort 3300023764 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.K8 DOE Joint Genome Institute (JGI) 3300023764 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 190960 225 0 0 0 0 SRX4548203 Unrestricted 0.0 single_particle_sort 3300016600 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - PAUC34f_bacterium_SCGC_AG-636-D14 DOE Joint Genome Institute (JGI) 3300016600 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 2215870 2160 1 0 1 0 SRX3784694 Unrestricted 0.0 single_particle_sort 3300015093 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown archaeum SCGC_AG-274-D22 DOE Joint Genome Institute (JGI) 3300015093 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 64732 102 0 0 0 0 SRX3578321 Unrestricted 0.0 single_particle_sort 3300033266 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.J16 DOE Joint Genome Institute (JGI) 3300033266 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 260428 304 0 0 0 0 SRX7630669 Unrestricted 0.0 single_particle_sort 3300022103 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.K9 DOE Joint Genome Institute (JGI) 3300022103 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1103805 1150 1 0 1 0 SRX3998133 Unrestricted 0.0 single_particle_sort 3300038251 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.G15 DOE Joint Genome Institute (JGI) 3300038251 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 236305 386 0 0 0 0 SRX9411162 Unrestricted 0.0 single_particle_sort 3300021809 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.K19 DOE Joint Genome Institute (JGI) 3300021809 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 671420 819 1 0 1 0 SRX3989544 Unrestricted 0.0 single_particle_sort 3300034604 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.H8 DOE Joint Genome Institute (JGI) 3300034604 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1145194 1243 0 0 0 0 SRX8394705 Unrestricted 0.0 single_particle_sort 3300014460 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.K15 DOE Joint Genome Institute (JGI) 3300014460 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1554358 1508 1 0 0 0 SRX3367726 Unrestricted 0.0 single_particle_sort 3300022003 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - Acetothermia bacterium JGI MDM2 NGM80-2-G20 DOE Joint Genome Institute (JGI) 3300022003 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 486289 542 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300018247 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_E22 DOE Joint Genome Institute (JGI) 3300018247 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 711527 749 0 0 0 0 SRX4652588 Unrestricted 0.0 single_particle_sort 3300015556 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-E08 DOE Joint Genome Institute (JGI) 3300015556 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 577974 668 0 0 0 0 SRX3560068 Unrestricted 0.0 single_particle_sort 3300022136 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.G13 DOE Joint Genome Institute (JGI) 3300022136 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 3762441 3232 0 0 1 0 SRX3998122 Unrestricted 0.0 single_particle_sort 3300010776 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_29_SCGC_AG-159-K05 DOE Joint Genome Institute (JGI) 3300010776 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 289447 331 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300034571 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.H10 DOE Joint Genome Institute (JGI) 3300034571 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 618320 671 0 0 0 0 SRX8393469 Unrestricted 0.0 single_particle_sort 3300023900 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.H10 DOE Joint Genome Institute (JGI) 3300023900 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 799444 943 1 0 1 0 SRX4522603 Unrestricted 0.0 single_particle_sort 3300024772 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-M02 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024772 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 139857 201 0 0 0 0 0.0 single_particle_sort 3300014427 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.D15 DOE Joint Genome Institute (JGI) 3300014427 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 832295 916 1 0 1 0 SRX3366831 Unrestricted 0.0 single_particle_sort 3300010743 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_20_SCGC_AG-138-I14 DOE Joint Genome Institute (JGI) 3300010743 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 132448 171 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300016379 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG-582-N23 DOE Joint Genome Institute (JGI) 3300016379 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 832962 894 1 0 0 0 SRX3580061 Unrestricted 0.0 single_particle_sort 3300022036 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - TA06 bacterium JGI MDM2 NGM80-1-H22 DOE Joint Genome Institute (JGI) 3300022036 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 991320 1232 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300022959 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.C15 DOE Joint Genome Institute (JGI) 3300022959 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 105191 145 0 0 0 0 SRX4420717 Unrestricted 0.0 single_particle_sort 3300032603 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.C10 DOE Joint Genome Institute (JGI) 3300032603 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 387526 385 1 0 1 0 SRX6430500 Unrestricted 0.0 single_particle_sort 3300033251 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.H17 DOE Joint Genome Institute (JGI) 3300033251 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 347973 395 0 0 0 0 SRX7630665 Unrestricted 0.0 single_particle_sort 3300018408 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Proteobacteria_bacterium_SCGC_AG-650-J16 DOE Joint Genome Institute (JGI) 3300018408 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 2952583 2661 3 0 3 0 SRX3981826 Unrestricted 0.0 single_particle_sort 3300015480 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-M14 DOE Joint Genome Institute (JGI) 3300015480 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 183041 244 0 0 0 0 SRX3560352 Unrestricted 0.0 single_particle_sort 3300022649 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Rickettsiales bacterium JGI PCGPRD042217_18 DOE Joint Genome Institute (JGI) 3300022649 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 7482960 9105 3 0 2 1 SRX4415193 Unrestricted 0.0 single_particle_sort 3300024748 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-L03 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024748 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 144408 169 0 0 0 0 0.0 single_particle_sort 3300041237 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.G15 DOE Joint Genome Institute (JGI) 3300041237 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 760164 924 1 0 1 0 SRX9653913 Unrestricted 0.0 single_particle_sort 3300016531 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from underground thermal water from 5P borehole, Tomsk, Russia - Ignavibacteria_SCGC_AG-717-B04 DOE Joint Genome Institute (JGI) 3300016531 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole Groundwater 58.0758 82.8374 7.49-7.6 740139 662 0 0 0 0 SRX3783257 Unrestricted 0.0 single_particle_sort 3300024104 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.M21 DOE Joint Genome Institute (JGI) 3300024104 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1874703 1984 1 0 1 0 SRX4519617 Unrestricted 0.0 single_particle_sort 3300034640 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.G11 DOE Joint Genome Institute (JGI) 3300034640 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 639709 699 0 0 1 0 SRX8391068 Unrestricted 0.0 single_particle_sort 3300048624 *Microbiome Permanent Draft Sorted cell/s from seawater in Southern California Bight, CA, United States Sorted cell/s from seawater in Southern California Bight, CA, United States - Uncultured microbe JGI_Larkin.APRIL.SYBR.01.E13 DOE Joint Genome Institute (JGI) 3300048624 Metagenome - Single Particle Sort spades v. 3.15.2 released based on JGI ITS No Yes larkinsa@uci.edu Alyse Larkin-Swartout No Environmental Aquatic Coastal Marine Unclassified Seawater 33.6062 -117.9312 267903 327 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015152 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - Omnitrophica bacterium SCGC_AG-290-E08 DOE Joint Genome Institute (JGI) 3300015152 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 1140943 1076 0 0 0 0 SRX3578548 Unrestricted 0.0 single_particle_sort 3300035470 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_J14 DOE Joint Genome Institute (JGI) 3300035470 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 111107 126 0 0 0 0 SRX9539992 Unrestricted 0.0 single_particle_sort 3300038266 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.05.C12 DOE Joint Genome Institute (JGI) 3300038266 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 115622 137 1 0 1 0 SRX9411222 Unrestricted 0.0 single_particle_sort 3300041265 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.2.K17 DOE Joint Genome Institute (JGI) 3300041265 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 771925 850 1 0 1 0 SRX9666452 Unrestricted 0.0 single_particle_sort 3300038054 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.E9 DOE Joint Genome Institute (JGI) 3300038054 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 415863 424 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300019439 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent microbial mat, Guaymas Basin, Mexico - 6Y_4868_18_08 DOE Joint Genome Institute (JGI) 3300019439 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.001 -110.5999 5251998 5149 1 0 2 0 SRX3974360 Unrestricted 0.0 single_particle_sort 3300071288 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_PTA_G02_scBac_plate.C DOE Joint Genome Institute (JGI) 3300071288 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 5160679 5553 2 0 5 0 Unrestricted 0.0 single_particle_sort 3300024373 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.K22 DOE Joint Genome Institute (JGI) 3300024373 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 71268 100 0 0 0 0 SRX4547821 Unrestricted 0.0 single_particle_sort 3300015016 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.J10 DOE Joint Genome Institute (JGI) 3300015016 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 305304 382 0 0 0 0 Restricted 0.0 single_particle_sort 3300023944 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.J8 DOE Joint Genome Institute (JGI) 3300023944 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1156634 1232 0 0 0 0 SRX4519601 Unrestricted 0.0 single_particle_sort 3300015561 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-G12 DOE Joint Genome Institute (JGI) 3300015561 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 647760 695 0 0 1 0 SRX3560314 Unrestricted 0.0 single_particle_sort 3300037941 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.K4 DOE Joint Genome Institute (JGI) 3300037941 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 317519 395 0 0 0 0 SRX9410602 Unrestricted 0.0 single_particle_sort 3300023854 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.K21 DOE Joint Genome Institute (JGI) 3300023854 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 570942 697 0 0 0 0 SRX4501309 Unrestricted 0.0 single_particle_sort 3300015116 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-P08 DOE Joint Genome Institute (JGI) 3300015116 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 389148 444 0 0 2 0 SRX3578347 Unrestricted 0.0 single_particle_sort 3300015582 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-L19 DOE Joint Genome Institute (JGI) 3300015582 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 954144 955 0 0 0 0 SRX3550853 Unrestricted 0.0 single_particle_sort 3300034439 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.E17 DOE Joint Genome Institute (JGI) 3300034439 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 689335 748 0 0 0 0 SRX8389176 Unrestricted 0.0 single_particle_sort 3300016107 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown archaeum SCGC_AG-578-G16 DOE Joint Genome Institute (JGI) 3300016107 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 532268 589 1 0 0 0 SRX3579205 Unrestricted 0.0 single_particle_sort 3300032337 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.D17 DOE Joint Genome Institute (JGI) 3300032337 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 517406 561 0 0 0 0 SRX6449959 Unrestricted 0.0 single_particle_sort 3300024847 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-G18 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024847 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 84366 104 0 0 0 0 0.0 single_particle_sort 3300071199 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_edMDA_C09_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071199 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 236797 248 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300015380 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - unknown archaeum SCGC_AG-128-A04 DOE Joint Genome Institute (JGI) 3300015380 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 314517 435 0 0 0 0 SRX3574191 Unrestricted 0.0 single_particle_sort 3300018308 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_K9 DOE Joint Genome Institute (JGI) 3300018308 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1205573 1189 1 0 1 0 SRX4649189 Unrestricted 0.0 single_particle_sort 3300016007 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-M09 DOE Joint Genome Institute (JGI) 3300016007 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 346016 475 0 0 0 0 SRX3560787 Unrestricted 0.0 single_particle_sort 3300033297 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.J7 DOE Joint Genome Institute (JGI) 3300033297 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 189873 226 0 0 0 0 SRX7630496 Unrestricted 0.0 single_particle_sort 3300024647 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-J04 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024647 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 53005 84 0 0 0 0 0.0 single_particle_sort 3300015722 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-M04 DOE Joint Genome Institute (JGI) 3300015722 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 131969 176 1 0 0 0 SRX3560808 Unrestricted 0.0 single_particle_sort 3300015005 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-2.E7 DOE Joint Genome Institute (JGI) 3300015005 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 260388 318 1 0 0 0 Restricted 0.0 single_particle_sort 3300033775 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P4_A19 DOE Joint Genome Institute (JGI) 3300033775 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 4349 5 0 0 0 0 SRX7525377 Unrestricted 0.0 single_particle_sort 3300019840 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-J5 DOE Joint Genome Institute (JGI) 3300019840 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 393502 447 0 0 0 0 SRX4663337 Unrestricted 0.0 single_particle_sort 3300049939 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_E7_SVS DOE Joint Genome Institute (JGI) 3300049939 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 98548 179 0 0 0 0 Restricted 0.0 single_particle_sort 3300071253 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_F05_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071253 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 2832017 2807 2 0 1 0 Unrestricted 0.0 single_particle_sort 3300035809 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_B14 DOE Joint Genome Institute (JGI) 3300035809 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 53495 71 0 0 0 0 SRX10045677 Unrestricted 0.0 single_particle_sort 3300041342 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.L12 DOE Joint Genome Institute (JGI) 3300041342 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1805022 1720 1 0 1 0 SRX9646936 Unrestricted 0.0 single_particle_sort 3300019950 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-G13 DOE Joint Genome Institute (JGI) 3300019950 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 156201 159 1 0 0 0 SRX4654652 Unrestricted 0.0 single_particle_sort 3300015105 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-I21 DOE Joint Genome Institute (JGI) 3300015105 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 331602 387 0 0 1 0 SRX3578330 Unrestricted 0.0 single_particle_sort 3300019640 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-E15 DOE Joint Genome Institute (JGI) 3300019640 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 91728 121 0 0 0 0 SRX3550882 Unrestricted 0.0 single_particle_sort 3300037897 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.L9 DOE Joint Genome Institute (JGI) 3300037897 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 2081487 1915 0 0 0 0 SRX9409564 Unrestricted 0.0 single_particle_sort 3300022095 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.M13 DOE Joint Genome Institute (JGI) 3300022095 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1313535 1440 0 0 1 0 SRX3998121 Unrestricted 0.0 single_particle_sort 3300036039 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_L21 DOE Joint Genome Institute (JGI) 3300036039 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 30377 39 0 0 0 0 SRX10076844 Unrestricted 0.0 single_particle_sort 3300010784 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_7_SCGC_AG-138-E10 DOE Joint Genome Institute (JGI) 3300010784 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 324517 381 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300018161 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_I9 DOE Joint Genome Institute (JGI) 3300018161 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 720551 742 1 0 1 0 SRX4647823 Unrestricted 0.0 single_particle_sort 3300023920 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.D22 DOE Joint Genome Institute (JGI) 3300023920 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 965778 1068 1 0 1 0 SRX4504834 Unrestricted 0.0 single_particle_sort 3300019908 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-N4 DOE Joint Genome Institute (JGI) 3300019908 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 369234 444 0 0 0 0 SRX4663486 Unrestricted 0.0 single_particle_sort 3300047779 *Microbiome Permanent Draft Groundwater microbial communities from wells in Ash Sharqiyah North Governorate, Oman Sorted cell/s from groundwater from well in Ash Sharqiyah North Governorate, Oman - Uncultured microbe JGI_Spietz.BA1A250.Sybr.02.M14 DOE Joint Genome Institute (JGI) 3300047779 Metagenome - Single Particle Sort spades v. 3.15.2 released based on JGI ITS No Yes rachel.spietz@montana.edu Rachel Spietz No Environmental Aquatic Groundwater Freshwater Unclassified groundwater 22.881217 58.7006 33845 43 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300014407 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.D14 DOE Joint Genome Institute (JGI) 3300014407 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 534562 659 0 0 1 0 SRX3298915 Unrestricted 0.0 single_particle_sort 3300018219 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-K20 DOE Joint Genome Institute (JGI) 3300018219 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 727727 691 0 0 0 0 SRX3979357 Unrestricted 0.0 single_particle_sort 3300015436 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-M08 DOE Joint Genome Institute (JGI) 3300015436 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 88724 118 0 0 0 0 SRX3550859 Unrestricted 0.0 single_particle_sort 3300035931 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.D21 DOE Joint Genome Institute (JGI) 3300035931 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 957041 1028 0 0 0 0 SRX8862476 Unrestricted 0.0 single_particle_sort 3300023967 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.H14 DOE Joint Genome Institute (JGI) 3300023967 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1493115 1635 1 0 2 0 SRX4523156 Unrestricted 0.0 single_particle_sort 3300021629 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.M17 DOE Joint Genome Institute (JGI) 3300021629 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 43518 68 0 0 0 0 SRX4009715 Unrestricted 0.0 single_particle_sort 3300024689 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-A16 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024689 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 90030 115 0 0 0 0 0.0 single_particle_sort 3300016620 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - Chloroflexi_bacterium_SCGC_AG-640-K10 DOE Joint Genome Institute (JGI) 3300016620 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 2611805 2745 0 0 1 0 SRX3784362 Unrestricted 0.0 single_particle_sort 3300051157 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_I20_SVS DOE Joint Genome Institute (JGI) 3300051157 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 84295 105 0 0 0 0 Restricted 0.0 single_particle_sort 3300015637 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from a deep sea mud volcano in Anaximander Mountains, Eastern Mediterranean Sea - B25.1.2014 1113 MDM2 B25 p1 16S.J8.double-seq DOE Joint Genome Institute (JGI) 3300015637 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Mud volcano Marine Unclassified Deep sea volcano 35.3338 30.2722 433461 506 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300015865 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-E21 DOE Joint Genome Institute (JGI) 3300015865 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 187576 230 1 0 0 0 SRX3546978 Unrestricted 0.0 single_particle_sort 3300018350 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Actinobacteria_bacterium_SCGC_AG-650-L08 DOE Joint Genome Institute (JGI) 3300018350 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1647104 1525 1 0 1 0 SRX3979966 Unrestricted 0.0 single_particle_sort 3300022123 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.F10 DOE Joint Genome Institute (JGI) 3300022123 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 3264211 2952 1 0 1 0 SRX3998085 Unrestricted 0.0 single_particle_sort 3300024075 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.G21 DOE Joint Genome Institute (JGI) 3300024075 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 594256 646 0 0 0 0 SRX4500629 Unrestricted 0.0 single_particle_sort 3300023935 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.05.E22 DOE Joint Genome Institute (JGI) 3300023935 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 1082900 1183 0 0 0 0 SRX4391167 Unrestricted 0.0 single_particle_sort 3300026578 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-D21 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026578 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 39813 53 0 0 0 0 0.0 single_particle_sort 3300021829 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.D22 DOE Joint Genome Institute (JGI) 3300021829 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 3384128 3483 1 0 1 0 SRX3989574 Unrestricted 0.0 single_particle_sort 3300024889 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR46.Redo.05.F19 DOE Joint Genome Institute (JGI) 3300024889 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.242 21.4899 636017 760 0 0 0 0 SRX4391294 Unrestricted 0.0 single_particle_sort 3300015403 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Omnitrophica bacterium SCGC_AG-128-I18 DOE Joint Genome Institute (JGI) 3300015403 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 809600 844 0 0 1 0 SRX3577016 Unrestricted 0.0 single_particle_sort 3300015837 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-J11 DOE Joint Genome Institute (JGI) 3300015837 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 299938 338 1 0 1 0 SRX3562943 Unrestricted 0.0 single_particle_sort 3300015665 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Jinze hot spring sediment, Tengchong, China - JNZ.1.2014 1216 MDM2 JNZ p1 16S.E11.double-seq DOE Joint Genome Institute (JGI) 3300015665 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 25.4413 98.46 1254147 1160 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300022023 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - TA06 bacterium JGI MDM2 NGM80-1-J19 DOE Joint Genome Institute (JGI) 3300022023 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 613983 722 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300032680 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.I12 DOE Joint Genome Institute (JGI) 3300032680 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 103303 111 0 0 0 0 SRX6452750 Unrestricted 0.0 single_particle_sort 3300023509 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.H16 DOE Joint Genome Institute (JGI) 3300023509 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 101656 146 1 0 0 0 SRX4500705 Unrestricted 0.0 single_particle_sort 3300033927 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.D18 DOE Joint Genome Institute (JGI) 3300033927 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 765575 880 1 0 1 0 SRX7630401 Unrestricted 0.0 single_particle_sort 3300033704 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_N7 DOE Joint Genome Institute (JGI) 3300033704 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 12539 14 0 0 0 0 SRX7528817 Unrestricted 0.0 single_particle_sort 3300032568 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.N22 DOE Joint Genome Institute (JGI) 3300032568 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 505190 598 0 0 1 0 SRX6452166 Unrestricted 0.0 single_particle_sort 3300019624 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-C12 DOE Joint Genome Institute (JGI) 3300019624 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 72067 99 0 0 0 0 SRX3550870 Unrestricted 0.0 single_particle_sort 3300023913 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.C4 DOE Joint Genome Institute (JGI) 3300023913 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 884717 1013 1 0 1 0 SRX4519550 Unrestricted 0.0 single_particle_sort 3300024664 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-L10 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024664 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 79617 95 0 0 1 0 0.0 single_particle_sort 3300022971 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - GAL08 bacterium JGI MDM2 DC4-2-M4 DOE Joint Genome Institute (JGI) 3300022971 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org; ruhl.ilona@gmail.com Ramunas Stepanauskas; Ilona Ruhl No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 379235 441 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300018182 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-E08 DOE Joint Genome Institute (JGI) 3300018182 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 503097 422 0 0 2 0 SRX3978445 Unrestricted 0.0 single_particle_sort 3300016366 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown archaeum SCGC_AG-582-E05 DOE Joint Genome Institute (JGI) 3300016366 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 827471 863 1 0 1 0 SRX3579951 Unrestricted 0.0 single_particle_sort 3300033960 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.C15 DOE Joint Genome Institute (JGI) 3300033960 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 695505 782 0 0 0 0 SRX7630360 Unrestricted 0.0 single_particle_sort 3300050921 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-G16 DOE Joint Genome Institute (JGI) 3300050921 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 727013 893 1 0 1 0 Restricted 0.0 single_particle_sort 3300038072 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.H4 DOE Joint Genome Institute (JGI) 3300038072 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 264819 320 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300022010 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - Acetothermia bacterium JGI MDM2 NGM80-2-I11 DOE Joint Genome Institute (JGI) 3300022010 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 490424 572 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300010769 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.L17 DOE Joint Genome Institute (JGI) 3300010769 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 213068 272 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015738 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-E07 DOE Joint Genome Institute (JGI) 3300015738 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 103787 127 0 0 0 0 SRX3561058 Unrestricted 0.0 single_particle_sort 3300018450 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_F6 DOE Joint Genome Institute (JGI) 3300018450 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 656986 680 0 0 0 0 SRX4651084 Unrestricted 0.0 single_particle_sort 3300023872 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.L13 DOE Joint Genome Institute (JGI) 3300023872 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 711126 758 0 0 1 0 SRX4501333 Unrestricted 0.0 single_particle_sort 3300022110 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.I21 DOE Joint Genome Institute (JGI) 3300022110 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 2157224 2146 1 0 1 0 SRX3998338 Unrestricted 0.0 single_particle_sort 3300016155 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG_AG-578-D11 DOE Joint Genome Institute (JGI) 3300016155 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 521833 664 0 0 0 0 SRX3579191 Unrestricted 0.0 single_particle_sort 3300016055 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-188-P18 DOE Joint Genome Institute (JGI) 3300016055 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 441963 539 1 0 0 0 SRX3578238 Unrestricted 0.0 single_particle_sort 3300023414 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.J14 DOE Joint Genome Institute (JGI) 3300023414 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 925497 1026 2 0 1 0 SRX4519761 Unrestricted 0.0 single_particle_sort 3300050936 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-956-B05 DOE Joint Genome Institute (JGI) 3300050936 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1197303 -42.124435 1656189 1531 0 0 0 0 Restricted 0.0 single_particle_sort 3300071266 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_Wchmk_E07_scBac_plate.C DOE Joint Genome Institute (JGI) 3300071266 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 1092842 983 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300019546 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-J04 DOE Joint Genome Institute (JGI) 3300019546 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 29164 39 0 0 0 0 SRX3560342 Unrestricted 0.0 single_particle_sort 3300041232 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.G21 DOE Joint Genome Institute (JGI) 3300041232 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 768511 766 0 0 0 0 SRX9523943 Unrestricted 0.0 single_particle_sort 3300023145 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.D10 DOE Joint Genome Institute (JGI) 3300023145 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 950819 1054 1 0 1 0 SRX4509177 Unrestricted 0.0 single_particle_sort 3300015628 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Gongxiaoshe hot spring sediment, Tengchong, China - GXS.2.2014 1201 MDM2 GXS p2 16S.F14.double-seq DOE Joint Genome Institute (JGI) 3300015628 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 25.4401 98.4408 279986 331 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300019573 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-F07 DOE Joint Genome Institute (JGI) 3300019573 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 55054 56 0 0 0 0 SRX3560308 Unrestricted 0.0 single_particle_sort 3300041646 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.L18 DOE Joint Genome Institute (JGI) 3300041646 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2086342 2029 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300018278 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Microgenometes_bacterium_SCGC_AG-650-L11 DOE Joint Genome Institute (JGI) 3300018278 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 980748 1036 1 0 1 0 SRX3981815 Unrestricted 0.0 single_particle_sort 3300018149 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_B15 DOE Joint Genome Institute (JGI) 3300018149 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 527516 579 1 0 1 0 SRX4647023 Unrestricted 0.0 single_particle_sort 3300050903 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_J8_SVS DOE Joint Genome Institute (JGI) 3300050903 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 22974 27 0 0 0 0 Restricted 0.0 single_particle_sort 3300015828 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-3-D22 DOE Joint Genome Institute (JGI) 3300015828 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 232280 321 0 0 0 0 SRX3551353 Unrestricted 0.0 single_particle_sort 3300010741 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.04.N4 DOE Joint Genome Institute (JGI) 3300010741 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 128867 157 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300034546 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.H12 DOE Joint Genome Institute (JGI) 3300034546 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 322020 362 0 0 0 0 SRX8392457 Unrestricted 0.0 single_particle_sort 3300038099 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .E5 DOE Joint Genome Institute (JGI) 3300038099 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 698485 760 0 0 0 0 SRX9411570 Unrestricted 0.0 single_particle_sort 3300033938 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.J11 DOE Joint Genome Institute (JGI) 3300033938 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 461222 506 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300034573 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.E19 DOE Joint Genome Institute (JGI) 3300034573 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 316187 339 0 0 0 0 SRX8393464 Unrestricted 0.0 single_particle_sort 3300038199 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.F9 DOE Joint Genome Institute (JGI) 3300038199 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 726150 816 0 0 0 0 SRX9411831 Unrestricted 0.0 single_particle_sort 3300051074 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 173_A3_SVS DOE Joint Genome Institute (JGI) 3300051074 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 102774 128 0 0 0 0 Restricted 0.0 single_particle_sort 3300037892 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.I15 DOE Joint Genome Institute (JGI) 3300037892 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 110376 151 0 0 0 0 SRX9411500 Unrestricted 0.0 single_particle_sort 3300041347 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.K11 DOE Joint Genome Institute (JGI) 3300041347 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 946994 916 0 0 0 0 SRX9647028 Unrestricted 0.0 single_particle_sort 3300023899 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.N17 DOE Joint Genome Institute (JGI) 3300023899 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 804132 887 1 0 0 0 SRX4502467 Unrestricted 0.0 single_particle_sort 3300016585 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - NC10_bacterium_SCGC_AG-636-J15 DOE Joint Genome Institute (JGI) 3300016585 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 1710975 1848 0 0 0 0 SRX3784398 Unrestricted 0.0 single_particle_sort 3300015760 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-F17 DOE Joint Genome Institute (JGI) 3300015760 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 132509 205 0 0 0 0 SRX3560979 Unrestricted 0.0 single_particle_sort 3300035926 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.F13 DOE Joint Genome Institute (JGI) 3300035926 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1547780 1671 1 0 1 0 SRX8862404 Unrestricted 0.0 single_particle_sort 3300021990 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - Candidate_division_AC1_(TA06)_bacterium_AG-188-F15 DOE Joint Genome Institute (JGI) 3300021990 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater, Deep subsurface Drilled well/Borehole groundwater -28.317 27.772 381300 326 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300022001 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface water in Homestake Mine, Lead, South Dakota, United States - Wolfe_bacterium_AG-138-M21 DOE Joint Genome Institute (JGI) 3300022001 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater, Deep subsurface Mine, Mine water subsurface water 44.3561 -103.7647 445817 543 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300015421 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Omnitrophica bacterium SCGC_AG-128-I11 DOE Joint Genome Institute (JGI) 3300015421 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 1351452 1347 1 0 1 0 SRX3577012 Unrestricted 0.0 single_particle_sort 3300015587 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-E13 DOE Joint Genome Institute (JGI) 3300015587 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 859102 988 0 0 0 0 SRX3549358 Unrestricted 0.0 single_particle_sort 3300016102 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-K16 DOE Joint Genome Institute (JGI) 3300016102 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 488369 578 0 0 0 0 SRX3540860 Unrestricted 0.0 single_particle_sort 3300038253 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.J19 DOE Joint Genome Institute (JGI) 3300038253 Metagenome - Single Particle Sort spades v. 3.14.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 522975 652 0 0 0 0 SRX9411185 Unrestricted 0.0 single_particle_sort 3300022994 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - S2R-29 bacterium JGI MDM2 DC4-3-N17 DOE Joint Genome Institute (JGI) 3300022994 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 1179456 1208 1 0 2 0 Unrestricted 0.0 single_particle_sort 3300024842 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-M21 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024842 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 180122 219 0 0 0 0 0.0 single_particle_sort 3300015904 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-I04 DOE Joint Genome Institute (JGI) 3300015904 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 250095 359 0 0 0 0 SRX3560705 Unrestricted 0.0 single_particle_sort 3300010846 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.N19 DOE Joint Genome Institute (JGI) 3300010846 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 1003478 1061 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300022101 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.H9 DOE Joint Genome Institute (JGI) 3300022101 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1410578 1329 1 0 1 0 SRX3998086 Unrestricted 0.0 single_particle_sort 3300015727 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-C20 DOE Joint Genome Institute (JGI) 3300015727 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 145183 182 0 0 0 0 SRX3560636 Unrestricted 0.0 single_particle_sort 3300021739 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.M13 DOE Joint Genome Institute (JGI) 3300021739 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 502351 599 0 0 1 0 SRX4009660 Unrestricted 0.0 single_particle_sort 3300033218 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.J21 DOE Joint Genome Institute (JGI) 3300033218 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 342853 424 0 0 0 0 SRX7630259 Unrestricted 0.0 single_particle_sort 3300016002 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-3-I18 DOE Joint Genome Institute (JGI) 3300016002 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 383602 473 0 0 0 0 SRX3553152 Unrestricted 0.0 single_particle_sort 3300024642 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-L23 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024642 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 55660 80 0 0 0 0 0.0 single_particle_sort 3300033292 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.H9 DOE Joint Genome Institute (JGI) 3300033292 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 251578 329 0 0 0 0 SRX7630524 Unrestricted 0.0 single_particle_sort 3300051152 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_P22_SVS DOE Joint Genome Institute (JGI) 3300051152 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 88422 121 0 0 0 0 Restricted 0.0 single_particle_sort 3300033670 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P4_L10 DOE Joint Genome Institute (JGI) 3300033670 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 8306 6 0 0 0 0 SRX7531024 Unrestricted 0.0 single_particle_sort 3300015632 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Gongxiaoshe hot spring sediment, Tengchong, China - GXS.2.2014 1201 MDM2 GXS p2 16S.N17.double-seq DOE Joint Genome Institute (JGI) 3300015632 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 25.4401 98.4408 355513 388 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300037969 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.J12 DOE Joint Genome Institute (JGI) 3300037969 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 56526 64 0 0 0 0 SRX9411498 Unrestricted 0.0 single_particle_sort 3300016488 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-A08 DOE Joint Genome Institute (JGI) 3300016488 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 97528 129 0 0 0 0 SRX3784721 Unrestricted 0.0 single_particle_sort 3300050980 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_O13_SVS DOE Joint Genome Institute (JGI) 3300050980 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 123075 174 0 0 0 0 Restricted 0.0 single_particle_sort 3300023962 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.J5 DOE Joint Genome Institute (JGI) 3300023962 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 1365676 1470 1 0 0 0 SRX4549247 Unrestricted 0.0 single_particle_sort 3300041228 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.M11 DOE Joint Genome Institute (JGI) 3300041228 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1518357 1531 1 0 1 0 SRX9653325 Unrestricted 0.0 single_particle_sort 3300033870 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.G9 DOE Joint Genome Institute (JGI) 3300033870 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 425450 524 0 0 0 0 SRX7626284 Unrestricted 0.0 single_particle_sort 3300015832 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-I14 DOE Joint Genome Institute (JGI) 3300015832 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 245703 330 0 0 0 0 SRX3560938 Unrestricted 0.0 single_particle_sort 3300016353 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown archaeum SCGC_AG-582-E09 DOE Joint Genome Institute (JGI) 3300016353 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 712281 844 1 0 0 0 SRX3579950 Unrestricted 0.0 single_particle_sort 3300023778 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.M17 DOE Joint Genome Institute (JGI) 3300023778 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 223482 280 0 0 0 0 SRX4548068 Unrestricted 0.0 single_particle_sort 3300015549 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown bacterium SCGC_AG-122-N20 DOE Joint Genome Institute (JGI) 3300015549 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 670048 635 0 0 0 0 SRX3574084 Unrestricted 0.0 single_particle_sort 3300051116 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_L3_SVS DOE Joint Genome Institute (JGI) 3300051116 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 96848 154 0 0 0 0 Restricted 0.0 single_particle_sort 3300041389 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.G17 DOE Joint Genome Institute (JGI) 3300041389 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1010214 976 0 0 0 0 SRX9646194 Unrestricted 0.0 single_particle_sort 3300023376 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.E18 DOE Joint Genome Institute (JGI) 3300023376 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 426223 418 0 0 1 0 SRX4548993 Unrestricted 0.0 single_particle_sort 3300023134 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.G18 DOE Joint Genome Institute (JGI) 3300023134 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 326900 365 1 0 1 0 SRX4508489 Unrestricted 0.0 single_particle_sort 3300033309 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.M8 DOE Joint Genome Institute (JGI) 3300033309 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 271397 314 0 0 0 0 SRX7630528 Unrestricted 0.0 single_particle_sort 3300014402 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.M05 DOE Joint Genome Institute (JGI) 3300014402 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 507518 555 0 0 0 0 SRX3368443 Unrestricted 0.0 single_particle_sort 3300023343 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.I17 DOE Joint Genome Institute (JGI) 3300023343 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 959088 1056 1 0 1 0 SRX4520591 Unrestricted 0.0 single_particle_sort 3300048734 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_B17_SVS DOE Joint Genome Institute (JGI) 3300048734 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 95700 146 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300016453 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Aminicenantes_bacterium_SCGC_AG-636-L18 DOE Joint Genome Institute (JGI) 3300016453 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 1414695 1404 0 0 0 0 SRX3784468 Unrestricted 0.0 single_particle_sort 3300035985 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.H22 DOE Joint Genome Institute (JGI) 3300035985 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 1034755 1056 0 0 0 0 SRX8855393 Unrestricted 0.0 single_particle_sort 3300018187 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_J20 DOE Joint Genome Institute (JGI) 3300018187 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 463585 465 0 0 0 0 SRX4652197 Unrestricted 0.0 single_particle_sort 3300038077 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.K7 DOE Joint Genome Institute (JGI) 3300038077 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 51779 73 0 0 0 0 SRX9411496 Unrestricted 0.0 single_particle_sort 3300041364 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.E7 DOE Joint Genome Institute (JGI) 3300041364 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1137146 1233 1 0 2 0 SRX9648148 Unrestricted 0.0 single_particle_sort 3300023877 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.K16 DOE Joint Genome Institute (JGI) 3300023877 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 811894 767 1 0 0 0 SRX4548018 Unrestricted 0.0 single_particle_sort 3300014455 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.C06 DOE Joint Genome Institute (JGI) 3300014455 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1425237 1432 0 0 0 0 SRX3298871 Unrestricted 0.0 single_particle_sort 3300032621 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.M8 DOE Joint Genome Institute (JGI) 3300032621 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 319651 371 0 0 1 0 SRX6429032 Unrestricted 0.0 single_particle_sort 3300015975 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG_AG-578-D17 DOE Joint Genome Institute (JGI) 3300015975 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 351927 443 1 0 1 0 SRX3579193 Unrestricted 0.0 single_particle_sort 3300016388 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-L07 DOE Joint Genome Institute (JGI) 3300016388 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 768711 923 0 0 0 0 SRX3551354 Unrestricted 0.0 single_particle_sort 3300038177 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.F15 DOE Joint Genome Institute (JGI) 3300038177 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 931644 1117 0 0 0 0 SRX9411769 Unrestricted 0.0 single_particle_sort 3300035258 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_K21 DOE Joint Genome Institute (JGI) 3300035258 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 392817 534 1 0 1 0 SRX9537808 Unrestricted 0.0 single_particle_sort 3300023981 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.N22 DOE Joint Genome Institute (JGI) 3300023981 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 1904682 1942 1 0 1 0 SRX4549795 Unrestricted 0.0 single_particle_sort 3300033922 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.K19 DOE Joint Genome Institute (JGI) 3300033922 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 205868 243 0 0 0 0 SRX7626812 Unrestricted 0.0 single_particle_sort 3300033409 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.D11 DOE Joint Genome Institute (JGI) 3300033409 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 811801 905 0 0 0 0 SRX7630339 Unrestricted 0.0 single_particle_sort 3300032586 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.L6 DOE Joint Genome Institute (JGI) 3300032586 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 831316 754 1 0 0 0 SRX6451711 Unrestricted 0.0 single_particle_sort 3300036743 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.J14.redo DOE Joint Genome Institute (JGI) 3300036743 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 564171 653 1 0 1 0 SRX8909171 Unrestricted 0.0 single_particle_sort 3300016526 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-B04 DOE Joint Genome Institute (JGI) 3300016526 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 561845 578 0 0 0 0 SRX3577112 Unrestricted 0.0 single_particle_sort 3300023476 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.C17 DOE Joint Genome Institute (JGI) 3300023476 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 1362496 1492 1 0 0 0 SRX4548271 Unrestricted 0.0 single_particle_sort 3300034745 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.3.F7 DOE Joint Genome Institute (JGI) 3300034745 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 795184 899 0 0 1 0 SRX8390262 Unrestricted 0.0 single_particle_sort 3300051005 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_O22_SVS DOE Joint Genome Institute (JGI) 3300051005 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 106869 149 0 0 0 0 Restricted 0.0 single_particle_sort 3300016229 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Omnitrophica bacterium SCGC_AG-574-C14 DOE Joint Genome Institute (JGI) 3300016229 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 420218 458 1 0 2 0 SRX3578827 Unrestricted 0.0 single_particle_sort 3300037984 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.G8 DOE Joint Genome Institute (JGI) 3300037984 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 378322 498 0 0 0 0 SRX9411023 Unrestricted 0.0 single_particle_sort 3300019530 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Leptolyngbya sp. HL7711_P1F1 JGI 000150CP-N13 DOE Joint Genome Institute (JGI) 3300019530 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 5271703 5363 1 0 2 0 Unrestricted 0.0 single_particle_sort 3300038097 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .E11 DOE Joint Genome Institute (JGI) 3300038097 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 754183 921 0 0 1 0 SRX9411571 Unrestricted 0.0 single_particle_sort 3300035802 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.N9 DOE Joint Genome Institute (JGI) 3300035802 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 535644 587 1 0 1 0 SRX8861264 Unrestricted 0.0 single_particle_sort 3300036758 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from MDA reagents in Walnut Creek, California, United States - SPS NoTemplateControl JGI_Crowe.TowutiS.SYBR.02.F2.redo DOE Joint Genome Institute (JGI) 3300036758 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Engineered Industrial production Reagent blank Chemical products Unclassified MDA reagents 37.9313 -122.0217 42721 63 0 0 0 0 SRX8911148 Unrestricted 0.0 single_particle_sort 3300015995 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-274-F22 DOE Joint Genome Institute (JGI) 3300015995 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 418116 466 0 0 0 0 SRX3578253 Unrestricted 0.0 single_particle_sort 3300041630 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.J10 DOE Joint Genome Institute (JGI) 3300041630 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 4002219 3898 1 0 1 0 SRX14835627 Unrestricted 0.0 single_particle_sort 3300038197 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.G18 DOE Joint Genome Institute (JGI) 3300038197 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 603073 846 0 0 0 0 SRX9411815 Unrestricted 0.0 single_particle_sort 3300023458 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.M6 DOE Joint Genome Institute (JGI) 3300023458 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 682814 651 0 0 0 0 SRX4548459 Unrestricted 0.0 single_particle_sort 3300041349 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.J21 DOE Joint Genome Institute (JGI) 3300041349 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1235370 1303 0 0 0 0 SRX9647027 Unrestricted 0.0 single_particle_sort 3300023897 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.H17 DOE Joint Genome Institute (JGI) 3300023897 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 865689 886 0 0 0 0 SRX4523630 Unrestricted 0.0 single_particle_sort 3300050850 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_L1_SVS DOE Joint Genome Institute (JGI) 3300050850 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 40061 58 0 0 0 0 Restricted 0.0 single_particle_sort 3300041625 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.K16 DOE Joint Genome Institute (JGI) 3300041625 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 5394505 5225 1 0 1 0 SRX14835553 Unrestricted 0.0 single_particle_sort 3300015589 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown archaeum SCGC_AG-122-F17 DOE Joint Genome Institute (JGI) 3300015589 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 795604 1100 1 0 0 0 SRX3573083 Unrestricted 0.0 single_particle_sort 3300021765 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.M7 DOE Joint Genome Institute (JGI) 3300021765 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 1299518 1448 0 0 1 0 SRX4004892 Unrestricted 0.0 single_particle_sort 3300034432 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.J13 DOE Joint Genome Institute (JGI) 3300034432 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 1417293 1474 0 0 1 0 SRX8389160 Unrestricted 0.0 single_particle_sort 3300016448 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - Proteobacteria_Deltaproteobacteria_bacterium_SCGC_AG-640-B05 DOE Joint Genome Institute (JGI) 3300016448 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 1381083 1377 1 0 1 0 SRX3784365 Unrestricted 0.0 single_particle_sort 3300015729 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-D20 DOE Joint Genome Institute (JGI) 3300015729 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 140569 185 0 0 0 0 SRX3561043 Unrestricted 0.0 single_particle_sort 3300035276 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_C10 DOE Joint Genome Institute (JGI) 3300035276 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 111664 116 0 0 0 0 SRX9538073 Unrestricted 0.0 single_particle_sort 3300023126 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.G21 DOE Joint Genome Institute (JGI) 3300023126 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1285026 1395 1 0 1 0 SRX4509707 Unrestricted 0.0 single_particle_sort 3300019525 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from Echinus Geyser water, Yellowstone National Park, Wyoming, United States - Geoarchaeota archaeon JGI 000156CP-L10 DOE Joint Genome Institute (JGI) 3300019525 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Acidic hot water 44.7225 -110.7014 1696371 1971 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300026168 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-P07 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026168 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 60793 70 0 0 0 0 0.0 single_particle_sort 3300050940 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-956-E16 DOE Joint Genome Institute (JGI) 3300050940 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1197303 -42.124435 1734197 1819 1 0 1 0 Restricted 0.0 single_particle_sort 3300021737 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.E7 DOE Joint Genome Institute (JGI) 3300021737 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 519834 578 0 0 0 0 SRX4009929 Unrestricted 0.0 single_particle_sort 3300071192 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_edMDA_D04_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071192 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 1194268 1123 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300023851 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.K13 DOE Joint Genome Institute (JGI) 3300023851 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 674145 693 0 0 0 0 SRX4525768 Unrestricted 0.0 single_particle_sort 3300048726 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 159_H9_SVS DOE Joint Genome Institute (JGI) 3300048726 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 44727 67 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023358 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.H17 DOE Joint Genome Institute (JGI) 3300023358 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1427893 1502 1 0 1 0 SRX4520580 Unrestricted 0.0 single_particle_sort 3300036028 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_H20 DOE Joint Genome Institute (JGI) 3300036028 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 232487 291 0 0 0 0 SRX10046794 Unrestricted 0.0 single_particle_sort 3300037944 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.L16 DOE Joint Genome Institute (JGI) 3300037944 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 31624 46 0 0 0 0 SRX9410599 Unrestricted 0.0 single_particle_sort 3300019432 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16044 DOE Joint Genome Institute (JGI) 3300019432 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 2488966 2648 1 0 1 0 SRX3987209 Unrestricted 0.0 single_particle_sort 3300010830 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_19_SCGC_AG-138-I10 DOE Joint Genome Institute (JGI) 3300010830 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 709344 760 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300023651 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.I15 DOE Joint Genome Institute (JGI) 3300023651 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 253292 272 1 0 1 0 SRX4547909 Unrestricted 0.0 single_particle_sort 3300023483 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.J16 DOE Joint Genome Institute (JGI) 3300023483 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 466476 505 0 0 0 0 SRX4548523 Unrestricted 0.0 single_particle_sort 3300023798 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.L19 DOE Joint Genome Institute (JGI) 3300023798 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 431480 412 0 0 0 0 SRX4548074 Unrestricted 0.0 single_particle_sort 3300015564 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown archaeum SCGC_AG-122-F06 DOE Joint Genome Institute (JGI) 3300015564 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 525275 714 0 0 0 0 SRX3573065 Unrestricted 0.0 single_particle_sort 3300023941 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.C20 DOE Joint Genome Institute (JGI) 3300023941 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 1245651 1212 1 0 1 0 SRX4549221 Unrestricted 0.0 single_particle_sort 3300034525 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P3_O4 DOE Joint Genome Institute (JGI) 3300034525 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 5307 14 0 0 0 0 SRX8136470 Unrestricted 0.0 single_particle_sort 3300032546 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.N15 DOE Joint Genome Institute (JGI) 3300032546 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 682082 807 1 0 1 0 SRX6451978 Unrestricted 0.0 single_particle_sort 3300038051 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.I21 DOE Joint Genome Institute (JGI) 3300038051 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 205173 282 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300022642 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States - Lactobacillales bacterium JGI AMGPRD042217_1 DOE Joint Genome Institute (JGI) 3300022642 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 1441695 1655 1 0 1 0 SRX4410799 Unrestricted 0.0 single_particle_sort 3300034530 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P8_E11 DOE Joint Genome Institute (JGI) 3300034530 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 5340 6 0 0 0 0 SRX8136631 Unrestricted 0.0 single_particle_sort 3300023396 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.I18 DOE Joint Genome Institute (JGI) 3300023396 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 192916 192 0 0 0 0 SRX4548997 Unrestricted 0.0 single_particle_sort 3300022952 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.G12 DOE Joint Genome Institute (JGI) 3300022952 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 150786 195 0 0 0 0 SRX4454502 Unrestricted 0.0 single_particle_sort 3300021638 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.H9 DOE Joint Genome Institute (JGI) 3300021638 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 73058 92 0 0 0 0 SRX3992148 Unrestricted 0.0 single_particle_sort 3300071322 *Microbiome Permanent Draft Comparing whole genome amplification chemistries for bacterial single cell genomics Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - scBac_PTA_EnviBac_sc_plate3well3C_S11 Stanford University 3300071322 Metagenome - Single Particle Sort Spades v. 3.15.3 released per request -- IMGSUPP-4358 No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 2756898 2812 0 0 1 0 0.0 single_particle_sort 3300035855 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.J9 DOE Joint Genome Institute (JGI) 3300035855 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 1224876 1361 0 0 0 0 SRX8897021 Unrestricted 0.0 single_particle_sort 3300010825 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.04.L14 DOE Joint Genome Institute (JGI) 3300010825 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 666183 649 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300024101 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.D11 DOE Joint Genome Institute (JGI) 3300024101 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1665280 1794 1 0 1 0 SRX4519527 Unrestricted 0.0 single_particle_sort 3300016348 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown archaeum SCGC_AG-657-J11 DOE Joint Genome Institute (JGI) 3300016348 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 645378 832 1 0 2 0 SRX3601373 Unrestricted 0.0 single_particle_sort 3300023756 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.C7 DOE Joint Genome Institute (JGI) 3300023756 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 158044 184 0 0 0 0 SRX4548268 Unrestricted 0.0 single_particle_sort 3300016534 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Sorted cell/s from deep shales in West Virginia, USA - MahaSR_06_C3 DOE Joint Genome Institute (JGI) 3300016534 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back deep subsurface 39.6017 -79.9761 585671 686 1 0 1 0 SRX3577093 Unrestricted 0.0 single_particle_sort 3300021838 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.G4 DOE Joint Genome Institute (JGI) 3300021838 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 2820950 2913 1 0 1 0 SRX3989660 Unrestricted 0.0 single_particle_sort 3300033254 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Ontario, Canada - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.J10 DOE Joint Genome Institute (JGI) 3300033254 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 438934 468 1 0 1 0 SRX7630695 Unrestricted 0.0 single_particle_sort 3300024001 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.G13 DOE Joint Genome Institute (JGI) 3300024001 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 2547393 2649 1 0 1 0 SRX4525385 Unrestricted 0.0 single_particle_sort 3300035945 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.D15 DOE Joint Genome Institute (JGI) 3300035945 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1215872 1290 1 0 1 0 SRX8862644 Unrestricted 0.0 single_particle_sort 3300018147 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_J7 DOE Joint Genome Institute (JGI) 3300018147 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 551653 532 1 0 0 0 SRX4646894 Unrestricted 0.0 single_particle_sort 3300015910 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-M16 DOE Joint Genome Institute (JGI) 3300015910 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 321116 364 0 0 0 0 SRX3563931 Unrestricted 0.0 single_particle_sort 3300024766 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-O23 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024766 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 161141 190 0 0 0 0 0.0 single_particle_sort 3300015225 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - Peregrinibacteria bacterium SCGC_AG-290-K14 DOE Joint Genome Institute (JGI) 3300015225 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 511031 539 1 0 1 0 SRX3578741 Unrestricted 0.0 single_particle_sort 3300038079 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .G22 DOE Joint Genome Institute (JGI) 3300038079 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 1054680 1256 1 0 1 0 SRX9411531 Unrestricted 0.0 single_particle_sort 3300018189 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_C16 DOE Joint Genome Institute (JGI) 3300018189 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 388823 409 0 0 0 0 SRX4652762 Unrestricted 0.0 single_particle_sort 3300038248 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.D14 DOE Joint Genome Institute (JGI) 3300038248 Metagenome - Single Particle Sort spades v. 3.14.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 746985 862 0 0 0 0 SRX9411125 Unrestricted 0.0 single_particle_sort 3300019586 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-M06 DOE Joint Genome Institute (JGI) 3300019586 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 35378 67 1 0 1 0 SRX3560786 Unrestricted 0.0 single_particle_sort 3300016260 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-574-A16 DOE Joint Genome Institute (JGI) 3300016260 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 552976 644 0 0 0 0 SRX3578794 Unrestricted 0.0 single_particle_sort 3300023879 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.I22 DOE Joint Genome Institute (JGI) 3300023879 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 764337 793 1 0 1 0 SRX4522970 Unrestricted 0.0 single_particle_sort 3300034593 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.D13 DOE Joint Genome Institute (JGI) 3300034593 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1765703 1831 1 0 1 0 SRX8394677 Unrestricted 0.0 single_particle_sort 3300038179 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.F22 DOE Joint Genome Institute (JGI) 3300038179 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 602329 770 0 0 0 0 SRX9411797 Unrestricted 0.0 single_particle_sort 3300050924 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-I18 DOE Joint Genome Institute (JGI) 3300050924 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 1301167 1407 1 0 1 0 Restricted 0.0 single_particle_sort 3300010762 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_13_SCGC_AG-159-D15 DOE Joint Genome Institute (JGI) 3300010762 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 255117 246 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300022974 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.F10 DOE Joint Genome Institute (JGI) 3300022974 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 655635 754 0 0 1 0 SRX4416611 Unrestricted 0.0 single_particle_sort 3300024661 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-K22 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024661 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 61540 93 0 0 0 0 0.0 single_particle_sort 3300033833 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.H20 DOE Joint Genome Institute (JGI) 3300033833 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 842140 794 0 0 1 0 SRX7630458 Unrestricted 0.0 single_particle_sort 3300019621 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-E07 DOE Joint Genome Institute (JGI) 3300019621 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 77607 98 1 0 1 0 SRX3560681 Unrestricted 0.0 single_particle_sort 3300015230 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - unknown bacterium SCGC_AG-290-L21 DOE Joint Genome Institute (JGI) 3300015230 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 709125 743 1 0 1 0 SRX3578745 Unrestricted 0.0 single_particle_sort 3300024368 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.H16 DOE Joint Genome Institute (JGI) 3300024368 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 43644 62 0 0 0 0 SRX4547878 Unrestricted 0.0 single_particle_sort 3300037913 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.G12 DOE Joint Genome Institute (JGI) 3300037913 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 614557 674 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300016227 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Parcubacteria bacterium SCGC_AG-278-N16 DOE Joint Genome Institute (JGI) 3300016227 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 373452 448 0 0 0 0 SRX3578496 Unrestricted 0.0 single_particle_sort 3300037967 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.D19 DOE Joint Genome Institute (JGI) 3300037967 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 290650 367 1 0 0 0 SRX9411495 Unrestricted 0.0 single_particle_sort 3300024682 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-N19 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024682 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 77547 107 0 0 0 0 0.0 single_particle_sort 3300021622 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.C16 DOE Joint Genome Institute (JGI) 3300021622 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 39237 50 0 0 0 0 SRX4009686 Unrestricted 0.0 single_particle_sort 3300034621 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.L16 DOE Joint Genome Institute (JGI) 3300034621 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1153274 1212 1 0 1 0 SRX8395077 Unrestricted 0.0 single_particle_sort 3300050808 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_O14_SVS DOE Joint Genome Institute (JGI) 3300050808 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 76438 118 0 0 0 0 Restricted 0.0 single_particle_sort 3300015923 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-274-C05 DOE Joint Genome Institute (JGI) 3300015923 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 298157 379 1 0 1 0 SRX3578239 Unrestricted 0.0 single_particle_sort 3300037935 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.J7 DOE Joint Genome Institute (JGI) 3300037935 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 58423 72 0 0 0 0 SRX9410595 Unrestricted 0.0 single_particle_sort 3300024882 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.I20 DOE Joint Genome Institute (JGI) 3300024882 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 471923 546 0 0 0 0 SRX4390371 Unrestricted 0.0 single_particle_sort 3300021822 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.F11 DOE Joint Genome Institute (JGI) 3300021822 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1835854 1895 0 0 0 0 SRX3990577 Unrestricted 0.0 single_particle_sort 3300033615 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P1_N2 DOE Joint Genome Institute (JGI) 3300033615 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 24613 35 0 0 0 0 SRX7525400 Unrestricted 0.0 single_particle_sort 3300018256 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-B17 DOE Joint Genome Institute (JGI) 3300018256 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 918722 871 0 0 0 0 SRX4815139 Unrestricted 0.0 single_particle_sort 3300015547 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-F07 DOE Joint Genome Institute (JGI) 3300015547 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 517859 601 0 0 1 0 SRX3549926 Unrestricted 0.0 single_particle_sort 3300019428 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16003 DOE Joint Genome Institute (JGI) 3300019428 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 2347443 2562 1 0 1 0 SRX3985606 Unrestricted 0.0 single_particle_sort 3300023400 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.H20 DOE Joint Genome Institute (JGI) 3300023400 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 287218 339 1 0 1 0 SRX4520590 Unrestricted 0.0 single_particle_sort 3300035934 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.K6 DOE Joint Genome Institute (JGI) 3300035934 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 90164 108 0 0 0 0 SRX8862491 Unrestricted 0.0 single_particle_sort 3300022280 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - unknown_bacterium_SCGC_AH-151-P08 Bigelow Laboratory for Ocean Sciences 3300022280 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 1257998 1152 1 0 1 0 0.0 single_particle_sort 3300034726 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P8_C10 DOE Joint Genome Institute (JGI) 3300034726 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 7407 9 0 0 0 0 SRX8136551 Unrestricted 0.0 single_particle_sort 3300016545 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from underground thermal water from 5P borehole, Tomsk, Russia - Ignavibacteria_SCGC_AG-716-G08 DOE Joint Genome Institute (JGI) 3300016545 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole Groundwater 58.0758 82.8374 7.49-7.6 1003665 886 1 0 1 0 SRX3783252 Unrestricted 0.0 single_particle_sort 3300037920 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.G19 DOE Joint Genome Institute (JGI) 3300037920 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 355811 466 0 0 0 0 SRX9410429 Unrestricted 0.0 single_particle_sort 3300036032 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_B21 DOE Joint Genome Institute (JGI) 3300036032 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 219015 277 0 0 0 0 SRX10076520 Unrestricted 0.0 single_particle_sort 3300041387 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.J11 DOE Joint Genome Institute (JGI) 3300041387 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 994920 908 0 0 0 0 SRX9645427 Unrestricted 0.0 single_particle_sort 3300010781 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_43_SCGC_AG-138-O11 DOE Joint Genome Institute (JGI) 3300010781 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 234460 360 0 0 2 0 Unrestricted 0.0 single_particle_sort 3300018164 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_E18 DOE Joint Genome Institute (JGI) 3300018164 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 893267 847 0 0 0 0 SRX4646896 Unrestricted 0.0 single_particle_sort 3300026608 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-I17 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026608 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 118374 143 0 0 0 0 0.0 single_particle_sort 3300034586 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.J11 DOE Joint Genome Institute (JGI) 3300034586 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1385967 1491 1 0 1 0 SRX8394645 Unrestricted 0.0 single_particle_sort 3300018212 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-B09 DOE Joint Genome Institute (JGI) 3300018212 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 572901 585 0 0 0 0 SRX3978415 Unrestricted 0.0 single_particle_sort 3300018298 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Chlorobiales_bacterium_SCGC_AG-650-A06 DOE Joint Genome Institute (JGI) 3300018298 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1342095 1190 1 0 1 0 SRX3974900 Unrestricted 0.0 single_particle_sort 3300019593 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-H17 DOE Joint Genome Institute (JGI) 3300019593 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 56049 69 1 0 0 0 SRX3561054 Unrestricted 0.0 single_particle_sort 3300033307 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.J9 DOE Joint Genome Institute (JGI) 3300033307 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 545297 633 1 0 0 0 SRX7627515 Unrestricted 0.0 single_particle_sort 3300032339 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.J10 DOE Joint Genome Institute (JGI) 3300032339 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 415690 418 1 0 0 0 SRX6433372 Unrestricted 0.0 single_particle_sort 3300023763 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR46.Redo.05.J19 DOE Joint Genome Institute (JGI) 3300023763 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.242 21.4899 154445 213 0 0 0 0 SRX4391291 Unrestricted 0.0 single_particle_sort 3300015094 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-L04 DOE Joint Genome Institute (JGI) 3300015094 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 174951 239 0 0 0 0 SRX3578335 Unrestricted 0.0 single_particle_sort 3300016109 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-B16 DOE Joint Genome Institute (JGI) 3300016109 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 495804 594 0 0 0 0 SRX3563196 Unrestricted 0.0 single_particle_sort 3300021100 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted archaeal cell/s from hot spring water in Nymph Lake, Yellowstone National Park, Wyoming, USA - Nanoarchaeota archaeon AD-903-F18 Oregon State University 3300021100 Metagenome - Single Particle Sort Spades v2.2.1 Manuscript to be submitted soon No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring water 44.75187 -110.7288 59029 86 0 0 0 0 0.0 single_particle_sort 3300034437 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.H10 DOE Joint Genome Institute (JGI) 3300034437 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 364517 400 0 0 0 0 SRX8389177 Unrestricted 0.0 single_particle_sort 3300036605 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.D8 DOE Joint Genome Institute (JGI) 3300036605 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 817676 866 0 0 0 0 SRX8902193 Unrestricted 0.0 single_particle_sort 3300032640 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.J10 DOE Joint Genome Institute (JGI) 3300032640 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 1474082 1503 0 0 0 0 SRX6451719 Unrestricted 0.0 single_particle_sort 3300015901 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-578-J08 DOE Joint Genome Institute (JGI) 3300015901 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 296864 351 0 0 0 0 SRX3579218 Unrestricted 0.0 single_particle_sort 3300022104 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from deep sea Kula mud volcano, Mediterranean Sea - Aerophobetes bacterium JGI MDM2 B17-1-K9 DOE Joint Genome Institute (JGI) 3300022104 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Mud volcano Marine Unclassified deep sea mud 35.9194 30.5916 1341809 1516 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300033299 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.G6 DOE Joint Genome Institute (JGI) 3300033299 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 341773 378 0 0 0 0 SRX7630493 Unrestricted 0.0 single_particle_sort 3300024649 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-N13 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024649 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 79046 88 0 0 0 0 0.0 single_particle_sort 3300022991 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.E13 DOE Joint Genome Institute (JGI) 3300022991 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 736939 829 1 0 1 0 SRX4416504 Unrestricted 0.0 single_particle_sort 3300016009 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-274-N10 DOE Joint Genome Institute (JGI) 3300016009 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 433537 478 0 0 0 0 SRX3578298 Unrestricted 0.0 single_particle_sort 3300034603 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.F19 DOE Joint Genome Institute (JGI) 3300034603 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 954329 1016 1 0 1 0 SRX8394702 Unrestricted 0.0 single_particle_sort 3300034731 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P9_B18 DOE Joint Genome Institute (JGI) 3300034731 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 2631 3 0 0 0 0 SRX8136697 Unrestricted 0.0 single_particle_sort 3300071197 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_edMDA_G05_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071197 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 469699 552 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300034465 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.F21 DOE Joint Genome Institute (JGI) 3300034465 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 1044051 1116 1 0 1 0 SRX8389558 Unrestricted 0.0 single_particle_sort 3300021732 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.E5 DOE Joint Genome Institute (JGI) 3300021732 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 484835 541 0 0 0 0 SRX4009356 Unrestricted 0.0 single_particle_sort 3300022004 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Atribacteria bacterium JGI MDM2 LBsed72-3-H20 DOE Joint Genome Institute (JGI) 3300022004 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment freshwater sediment 53.7598 107.9791 484498 557 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300033596 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.H7 DOE Joint Genome Institute (JGI) 3300033596 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 467593 502 1 0 1 0 SRX7626225 Unrestricted 0.0 single_particle_sort 3300023618 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.D21 DOE Joint Genome Institute (JGI) 3300023618 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 938943 1085 1 0 1 0 SRX4415514 Unrestricted 0.0 single_particle_sort 3300038092 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .D21 DOE Joint Genome Institute (JGI) 3300038092 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 68887 91 0 0 0 0 SRX9411566 Unrestricted 0.0 single_particle_sort 3300038018 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.C16 DOE Joint Genome Institute (JGI) 3300038018 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 546457 648 0 0 1 0 SRX9410431 Unrestricted 0.0 single_particle_sort 3300035807 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_D13 DOE Joint Genome Institute (JGI) 3300035807 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 259677 287 0 0 0 0 SRX10045579 Unrestricted 0.0 single_particle_sort 3300049937 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_E16_SVS DOE Joint Genome Institute (JGI) 3300049937 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 38225 49 0 0 0 0 Restricted 0.0 single_particle_sort 3300051071 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_J19_SVS DOE Joint Genome Institute (JGI) 3300051071 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 22767 31 0 0 0 0 Restricted 0.0 single_particle_sort 3300034636 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.I21 DOE Joint Genome Institute (JGI) 3300034636 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1628963 1711 1 0 1 0 SRX8390604 Unrestricted 0.0 single_particle_sort 3300023818 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.E21 DOE Joint Genome Institute (JGI) 3300023818 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 414131 530 1 0 0 0 SRX4506749 Unrestricted 0.0 single_particle_sort 3300023892 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.L12 DOE Joint Genome Institute (JGI) 3300023892 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 742793 881 0 0 1 0 SRX4526069 Unrestricted 0.0 single_particle_sort 3300016238 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-E17 DOE Joint Genome Institute (JGI) 3300016238 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 451687 532 0 0 1 0 SRX3562885 Unrestricted 0.0 single_particle_sort 3300037899 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.K12 DOE Joint Genome Institute (JGI) 3300037899 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 34917 49 0 0 0 0 SRX9409779 Unrestricted 0.0 single_particle_sort 3300010744 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.H11 DOE Joint Genome Institute (JGI) 3300010744 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 138618 172 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300038118 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .G7 DOE Joint Genome Institute (JGI) 3300038118 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 159233 208 0 0 0 0 SRX9411640 Unrestricted 0.0 single_particle_sort 3300049965 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_L16_SVS DOE Joint Genome Institute (JGI) 3300049965 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 41741 35 0 0 0 0 Restricted 0.0 single_particle_sort 3300038192 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.E6 DOE Joint Genome Institute (JGI) 3300038192 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 663334 770 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300033710 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P4_L9 DOE Joint Genome Institute (JGI) 3300033710 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 5617 9 0 0 0 0 SRX7525383 Unrestricted 0.0 single_particle_sort 3300036616 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.H11 DOE Joint Genome Institute (JGI) 3300036616 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 882771 977 0 0 0 0 SRX8902707 Unrestricted 0.0 single_particle_sort 3300041239 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.M5 DOE Joint Genome Institute (JGI) 3300041239 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1051917 1034 1 0 1 0 SRX9653938 Unrestricted 0.0 single_particle_sort 3300022647 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Rhodobacterales bacterium JGI PCGPRD042217_33 DOE Joint Genome Institute (JGI) 3300022647 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 1850852 2334 0 0 1 0 SRX4415251 Unrestricted 0.0 single_particle_sort 3300022957 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.K16 DOE Joint Genome Institute (JGI) 3300022957 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 105971 127 0 0 0 0 SRX4454668 Unrestricted 0.0 single_particle_sort 3300019636 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacterium bacterium SCGC_AG-582-A20 DOE Joint Genome Institute (JGI) 3300019636 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 118767 119 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300018142 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-I20 DOE Joint Genome Institute (JGI) 3300018142 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 511364 491 0 0 0 0 SRX3974505 Unrestricted 0.0 single_particle_sort 3300024095 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.F19 DOE Joint Genome Institute (JGI) 3300024095 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1266087 1361 0 0 0 0 SRX4519581 Unrestricted 0.0 single_particle_sort 3300035708 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_E10 DOE Joint Genome Institute (JGI) 3300035708 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 69271 100 0 0 0 0 SRX10045481 Unrestricted 0.0 single_particle_sort 3300019437 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from the Broadkill River microbial mat, Lewes, Delaware, United States - FB_161122 DOE Joint Genome Institute (JGI) 3300019437 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic River Freshwater Microbial mats microbial mat 38.7906 -75.1644 4928385 5725 5 0 9 0 SRX3974430 Unrestricted 0.0 single_particle_sort 3300019803 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-K15 DOE Joint Genome Institute (JGI) 3300019803 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 327167 344 0 0 0 0 SRX4663342 Unrestricted 0.0 single_particle_sort 3300033188 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.I20 DOE Joint Genome Institute (JGI) 3300033188 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 783708 794 0 0 0 0 SRX7630265 Unrestricted 0.0 single_particle_sort 3300023411 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.E17 DOE Joint Genome Institute (JGI) 3300023411 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 825202 905 1 0 0 0 SRX4548971 Unrestricted 0.0 single_particle_sort 3300033583 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P3_P3 DOE Joint Genome Institute (JGI) 3300033583 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 5731 8 0 0 0 0 SRX7529893 Unrestricted 0.0 single_particle_sort 3300024195 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Pseudomonas bacterium JGI PFNR15_M15 DOE Joint Genome Institute (JGI) 3300024195 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 453412 476 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300019465 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-2.N7 DOE Joint Genome Institute (JGI) 3300019465 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 98772 125 1 0 1 0 Restricted 0.0 single_particle_sort 3300041108 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.K11 DOE Joint Genome Institute (JGI) 3300041108 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 474051 587 1 0 0 0 SRX9654421 Unrestricted 0.0 single_particle_sort 3300019603 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.C09 DOE Joint Genome Institute (JGI) 3300019603 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 75854 79 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300024425 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Burkholderia bacterium JGI PFNR15_L20 DOE Joint Genome Institute (JGI) 3300024425 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 1170346 1200 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300026598 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-F17 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026598 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 106880 135 0 0 0 0 0.0 single_particle_sort 3300037981 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.J5 DOE Joint Genome Institute (JGI) 3300037981 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 500533 670 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300041150 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.F11 DOE Joint Genome Institute (JGI) 3300041150 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 929225 953 1 0 1 0 SRX9654257 Unrestricted 0.0 single_particle_sort 3300033929 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.H18 DOE Joint Genome Institute (JGI) 3300033929 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 598762 687 0 0 0 0 SRX7630410 Unrestricted 0.0 single_particle_sort 3300024386 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Janthinobacterium bacterium JGI PFNR15_B4 DOE Joint Genome Institute (JGI) 3300024386 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 169102 210 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300071248 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_A04_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071248 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 1786526 2207 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300016222 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-574-O11 DOE Joint Genome Institute (JGI) 3300016222 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 356635 432 1 0 1 0 SRX3579055 Unrestricted 0.0 single_particle_sort 3300035750 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.C21 DOE Joint Genome Institute (JGI) 3300035750 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 780086 845 0 0 0 0 SRX8857587 Unrestricted 0.0 single_particle_sort 3300010720 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.04.L20 DOE Joint Genome Institute (JGI) 3300010720 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 41681 55 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023984 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.N6 DOE Joint Genome Institute (JGI) 3300023984 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 1798165 1966 1 0 1 0 SRX4549802 Unrestricted 0.0 single_particle_sort 3300010735 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_34_SCGC_AG-138-L22 DOE Joint Genome Institute (JGI) 3300010735 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 95285 117 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300018263 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-I16 DOE Joint Genome Institute (JGI) 3300018263 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 942028 914 0 0 0 0 SRX4815277 Unrestricted 0.0 single_particle_sort 3300032624 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.J7 DOE Joint Genome Institute (JGI) 3300032624 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 443698 467 1 0 1 0 SRX6426244 Unrestricted 0.0 single_particle_sort 3300033795 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P1_I2 DOE Joint Genome Institute (JGI) 3300033795 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 3383 5 0 0 0 0 SRX7525342 Unrestricted 0.0 single_particle_sort 3300019568 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-F19 DOE Joint Genome Institute (JGI) 3300019568 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 38529 52 1 0 0 0 SRX3560685 Unrestricted 0.0 single_particle_sort 3300041361 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.K22 DOE Joint Genome Institute (JGI) 3300041361 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1727717032 3771237 323 37 1316 39 SRX9648150 Unrestricted 0.0 single_particle_sort 3300010767 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_5_SCGC_AG-159-B10 DOE Joint Genome Institute (JGI) 3300010767 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 216125 263 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300015440 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-G04 DOE Joint Genome Institute (JGI) 3300015440 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 81478 131 0 0 0 0 SRX3549927 Unrestricted 0.0 single_particle_sort 3300033355 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.D8 DOE Joint Genome Institute (JGI) 3300033355 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 256765 311 0 0 0 0 SRX7630498 Unrestricted 0.0 single_particle_sort 3300021728 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.E6 DOE Joint Genome Institute (JGI) 3300021728 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 524311 627 0 0 0 0 SRX4009595 Unrestricted 0.0 single_particle_sort 3300048731 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 159_P11_SVS DOE Joint Genome Institute (JGI) 3300048731 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 74679 86 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300024788 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-J16 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024788 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 176760 229 0 0 0 0 0.0 single_particle_sort 3300019680 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-L23 DOE Joint Genome Institute (JGI) 3300019680 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 448632 439 0 0 0 0 SRX3981315 Unrestricted 0.0 single_particle_sort 3300036037 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_J21 DOE Joint Genome Institute (JGI) 3300036037 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 73621 83 0 0 0 0 SRX10076518 Unrestricted 0.0 single_particle_sort 3300041382 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.F12 DOE Joint Genome Institute (JGI) 3300041382 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 3380063 2997 1 0 1 0 SRX9645388 Unrestricted 0.0 single_particle_sort 3300023131 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.I18 DOE Joint Genome Institute (JGI) 3300023131 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 258915 307 0 0 0 0 SRX4508741 Unrestricted 0.0 single_particle_sort 3300021660 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.K17 DOE Joint Genome Institute (JGI) 3300021660 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 152808 167 0 0 1 0 SRX3991047 Unrestricted 0.0 single_particle_sort 3300037376 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.H15.redo DOE Joint Genome Institute (JGI) 3300037376 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 858694 977 1 0 1 0 SRX9402821 Unrestricted 0.0 single_particle_sort 3300034568 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.C6 DOE Joint Genome Institute (JGI) 3300034568 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 298136 315 0 0 0 0 SRX8393467 Unrestricted 0.0 single_particle_sort 3300010713 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.B3 DOE Joint Genome Institute (JGI) 3300010713 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 22562 29 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300021096 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted archaeal cell/s from hot spring water in Nymph Lake, Yellowstone National Park, Wyoming, USA - Nanoarchaeota archaeon AD-903-B14 Oregon State University 3300021096 Metagenome - Single Particle Sort Spades v2.2.1 Manuscript to be submitted soon No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring water 44.75187 -110.7288 39537 49 0 0 0 0 0.0 single_particle_sort 3300018217 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-F19 DOE Joint Genome Institute (JGI) 3300018217 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 582164 612 0 0 1 0 SRX4815138 Unrestricted 0.0 single_particle_sort 3300036065 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_K7 DOE Joint Genome Institute (JGI) 3300036065 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 115298 140 0 0 0 0 SRX10045993 Unrestricted 0.0 single_particle_sort 3300014409 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.I04 DOE Joint Genome Institute (JGI) 3300014409 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 587610 679 0 0 1 0 SRX3364222 Unrestricted 0.0 single_particle_sort 3300033302 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.H5 DOE Joint Genome Institute (JGI) 3300033302 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 1512674 1592 1 0 1 0 SRX7630480 Unrestricted 0.0 single_particle_sort 3300050755 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_K8_SVS DOE Joint Genome Institute (JGI) 3300050755 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 53885 100 0 0 0 0 Restricted 0.0 single_particle_sort 3300024687 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-A07 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024687 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 89210 114 0 0 0 0 0.0 single_particle_sort 3300021627 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.G12 DOE Joint Genome Institute (JGI) 3300021627 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 59571 68 0 0 0 0 SRX4009954 Unrestricted 0.0 single_particle_sort 3300024393 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Pseudomonas bacterium JGI PFNR15_J21 DOE Joint Genome Institute (JGI) 3300024393 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 150820 160 1 0 2 0 Unrestricted 0.0 single_particle_sort 3300033455 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.F6 DOE Joint Genome Institute (JGI) 3300033455 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 753267 776 0 0 0 0 SRX7630286 Unrestricted 0.0 single_particle_sort 3300023969 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.H12 DOE Joint Genome Institute (JGI) 3300023969 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 1617861 1646 0 0 1 0 SRX4549594 Unrestricted 0.0 single_particle_sort 3300015639 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Sandy's Spring West, Nevada, USA - SSWsed.3.2015 0414 MDM2 SSWsed p3 16S.L19.double-peak DOE Joint Genome Institute (JGI) 3300015639 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 40.653 -119.3749 496218 581 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300024887 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.05.C19 DOE Joint Genome Institute (JGI) 3300024887 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 2110776 2309 0 0 1 0 SRX4391065 Unrestricted 0.0 single_particle_sort 3300021827 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.G11 DOE Joint Genome Institute (JGI) 3300021827 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1672158 1654 0 0 0 0 SRX3989545 Unrestricted 0.0 single_particle_sort 3300015542 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-F18 DOE Joint Genome Institute (JGI) 3300015542 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 479130 564 0 0 1 0 SRX3549930 Unrestricted 0.0 single_particle_sort 3300024753 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-F04 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024753 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 145560 172 0 0 0 0 0.0 single_particle_sort 3300015839 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-H18 DOE Joint Genome Institute (JGI) 3300015839 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 297602 342 0 0 0 0 SRX3560701 Unrestricted 0.0 single_particle_sort 3300035728 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_M6 DOE Joint Genome Institute (JGI) 3300035728 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 37743 60 0 0 0 0 SRX10045217 Unrestricted 0.0 single_particle_sort 3300037911 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.C8 DOE Joint Genome Institute (JGI) 3300037911 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 721394 888 0 0 0 0 SRX9410329 Unrestricted 0.0 single_particle_sort 3300010758 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.04.N8 DOE Joint Genome Institute (JGI) 3300010758 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 169164 217 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033703 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_M13 DOE Joint Genome Institute (JGI) 3300033703 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 37209 47 0 0 0 0 SRX7529070 Unrestricted 0.0 single_particle_sort 3300015146 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - Parcubacteria bacterium SCGC_AG-290-N10 DOE Joint Genome Institute (JGI) 3300015146 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 698469 779 1 0 1 0 SRX3578751 Unrestricted 0.0 single_particle_sort 3300023749 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.05.N9 DOE Joint Genome Institute (JGI) 3300023749 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 130864 162 0 0 0 0 SRX4390960 Unrestricted 0.0 single_particle_sort 3300015578 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown archaeum SCGC_AG-122-E20 DOE Joint Genome Institute (JGI) 3300015578 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 647657 819 0 0 0 0 SRX3573067 Unrestricted 0.0 single_particle_sort 3300041128 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.C14 DOE Joint Genome Institute (JGI) 3300041128 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1462378 1501 0 0 0 0 SRX9668766 Unrestricted 0.0 single_particle_sort 3300019623 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-F09 DOE Joint Genome Institute (JGI) 3300019623 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 82499 96 0 0 0 0 SRX3959698 Unrestricted 0.0 single_particle_sort 3300033831 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.L19 DOE Joint Genome Institute (JGI) 3300033831 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 4732015 4265 1 0 1 0 SRX7630463 Unrestricted 0.0 single_particle_sort 3300024405 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.L15 DOE Joint Genome Institute (JGI) 3300024405 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 676383 767 0 0 0 0 SRX4547839 Unrestricted 0.0 single_particle_sort 3300019557 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-L14 DOE Joint Genome Institute (JGI) 3300019557 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 29525 43 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300024663 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-A01 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024663 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 69548 93 0 0 0 0 0.0 single_particle_sort 3300015046 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.C20 DOE Joint Genome Institute (JGI) 3300015046 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 519658 608 1 0 1 0 Restricted 0.0 single_particle_sort 3300023914 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.G13 DOE Joint Genome Institute (JGI) 3300023914 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 764300 1010 0 0 0 0 SRX4389699 Unrestricted 0.0 single_particle_sort 3300033338 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.K6 DOE Joint Genome Institute (JGI) 3300033338 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 465621 486 1 0 1 0 SRX7627185 Unrestricted 0.0 single_particle_sort 3300050865 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_B10_SVS DOE Joint Genome Institute (JGI) 3300050865 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 21752 34 0 0 0 0 Restricted 0.0 single_particle_sort 3300034610 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.G4 DOE Joint Genome Institute (JGI) 3300034610 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 865381 917 0 0 0 0 SRX8394777 Unrestricted 0.0 single_particle_sort 3300032559 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.E12 DOE Joint Genome Institute (JGI) 3300032559 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 486281 500 1 0 1 0 SRX6427426 Unrestricted 0.0 single_particle_sort 3300010796 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.04.M17 DOE Joint Genome Institute (JGI) 3300010796 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 350326 425 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300021750 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.K20 DOE Joint Genome Institute (JGI) 3300021750 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 618108 667 0 0 0 0 SRX3990735 Unrestricted 0.0 single_particle_sort 3300034591 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.J15 DOE Joint Genome Institute (JGI) 3300034591 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1042798 1092 1 0 1 0 SRX8394678 Unrestricted 0.0 single_particle_sort 3300050837 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_H5_SVS DOE Joint Genome Institute (JGI) 3300050837 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 23784 40 0 0 0 0 Restricted 0.0 single_particle_sort 3300016399 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_E19 DOE Joint Genome Institute (JGI) 3300016399 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 877938 980 1 0 1 0 SRX4065913 Unrestricted 0.0 single_particle_sort 3300022619 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Rhizobiales bacterium JGI PCGPRD042217_4 DOE Joint Genome Institute (JGI) 3300022619 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 551090 668 1 0 2 0 SRX4414622 Unrestricted 0.0 single_particle_sort 3300024718 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-P19 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024718 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 115701 139 0 0 0 0 0.0 single_particle_sort 3300033438 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.I8 DOE Joint Genome Institute (JGI) 3300033438 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 637902 613 1 0 0 0 SRX7630312 Unrestricted 0.0 single_particle_sort 3300019610 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-E13 DOE Joint Genome Institute (JGI) 3300019610 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 56195 85 0 0 0 0 SRX3540068 Unrestricted 0.0 single_particle_sort 3300041312 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.L13 DOE Joint Genome Institute (JGI) 3300041312 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 638650 608 0 0 0 0 SRX9646402 Unrestricted 0.0 single_particle_sort 3300019591 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-C20 DOE Joint Genome Institute (JGI) 3300019591 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 58470 70 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300035827 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0815.Sybr.01.C21 DOE Joint Genome Institute (JGI) 3300035827 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 478887 596 1 0 1 0 SRX8894247 Unrestricted 0.0 single_particle_sort 3300010783 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_33_SCGC_AG-159-L04 DOE Joint Genome Institute (JGI) 3300010783 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 281001 376 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300024416 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Rhodanobacter bacterium JGI PFNR15_L19 DOE Joint Genome Institute (JGI) 3300024416 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 267661 311 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300018287 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_E13 DOE Joint Genome Institute (JGI) 3300018287 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 1111034 1019 1 0 1 0 SRX4646895 Unrestricted 0.0 single_particle_sort 3300019810 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-J13 DOE Joint Genome Institute (JGI) 3300019810 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 576200 571 1 0 1 0 SRX4663329 Unrestricted 0.0 single_particle_sort 3300036630 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.C18 DOE Joint Genome Institute (JGI) 3300036630 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 1332689 1481 2 0 1 0 SRX8903119 Unrestricted 0.0 single_particle_sort 3300035860 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.K10 DOE Joint Genome Institute (JGI) 3300035860 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 473992 522 1 0 0 0 SRX8897088 Unrestricted 0.0 single_particle_sort 3300041356 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.D19 DOE Joint Genome Institute (JGI) 3300041356 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1723362 1778 1 0 1 0 SRX9647198 Unrestricted 0.0 single_particle_sort 3300016129 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-M13 DOE Joint Genome Institute (JGI) 3300016129 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 525636 630 0 0 0 0 SRX3563025 Unrestricted 0.0 single_particle_sort 3300024617 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-O17 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024617 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 46921 56 0 0 0 0 0.0 single_particle_sort 3300016499 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - Omnitrophica bacterium SCGC_AG-188-C22 DOE Joint Genome Institute (JGI) 3300016499 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 235386 263 0 0 0 0 SRX3577119 Unrestricted 0.0 single_particle_sort 3300015921 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-E18 DOE Joint Genome Institute (JGI) 3300015921 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 308704 376 0 0 0 0 SRX3540066 Unrestricted 0.0 single_particle_sort 3300022124 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.L14 DOE Joint Genome Institute (JGI) 3300022124 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 2397637 2367 1 0 1 0 SRX3997883 Unrestricted 0.0 single_particle_sort 3300036625 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.C15 DOE Joint Genome Institute (JGI) 3300036625 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 1193679 1312 1 0 1 0 SRX8902886 Unrestricted 0.0 single_particle_sort 3300034623 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.N18 DOE Joint Genome Institute (JGI) 3300034623 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 912178 1033 1 0 0 0 SRX8395079 Unrestricted 0.0 single_particle_sort 3300024817 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-N02 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024817 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 222312 301 0 0 0 0 0.0 single_particle_sort 3300024080 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.H15 DOE Joint Genome Institute (JGI) 3300024080 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 667611 737 1 0 1 0 SRX4520684 Unrestricted 0.0 single_particle_sort 3300016029 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-I14 DOE Joint Genome Institute (JGI) 3300016029 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 405647 507 0 0 0 0 SRX3548483 Unrestricted 0.0 single_particle_sort 3300034557 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.J12 DOE Joint Genome Institute (JGI) 3300034557 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1012618 1095 0 0 0 0 SRX8393453 Unrestricted 0.0 single_particle_sort 3300022024 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - Acetothermia bacterium JGI MDM2 NGM80-2-F22 DOE Joint Genome Institute (JGI) 3300022024 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 620269 708 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300015404 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - unknown archaeum SCGC_AG-128-O16 DOE Joint Genome Institute (JGI) 3300015404 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 733935 873 1 0 1 0 SRX3577092 Unrestricted 0.0 single_particle_sort 3300021607 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.F15 DOE Joint Genome Institute (JGI) 3300021607 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 20005 24 0 0 0 0 SRX4009663 Unrestricted 0.0 single_particle_sort 3300023462 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.E15 DOE Joint Genome Institute (JGI) 3300023462 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 951128 978 1 0 1 0 SRX4548435 Unrestricted 0.0 single_particle_sort 3300021807 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.E4 DOE Joint Genome Institute (JGI) 3300021807 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 595189 706 0 0 0 0 SRX3989914 Unrestricted 0.0 single_particle_sort 3300016255 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Peregrinibacteria bacterium SCGC_AG-574-B20 DOE Joint Genome Institute (JGI) 3300016255 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 599539 623 2 0 0 0 SRX3578825 Unrestricted 0.0 single_particle_sort 3300018249 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - AC1_bacterium_SCGC_AG-650-K06 DOE Joint Genome Institute (JGI) 3300018249 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 757462 753 0 0 0 0 SRX3979961 Unrestricted 0.0 single_particle_sort 3300038088 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .G13 DOE Joint Genome Institute (JGI) 3300038088 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 644080 901 0 0 0 0 SRX9411540 Unrestricted 0.0 single_particle_sort 3300018178 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Nitrospirae_bacterium_SCGC_AG-650-D08 DOE Joint Genome Institute (JGI) 3300018178 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 280796 309 0 0 0 0 SRX3979519 Unrestricted 0.0 single_particle_sort 3300071254 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_A06_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071254 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 3281364 3526 1 0 3 0 Unrestricted 0.0 single_particle_sort 3300035732 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_K9 DOE Joint Genome Institute (JGI) 3300035732 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 95565 110 0 0 0 0 SRX10045421 Unrestricted 0.0 single_particle_sort 3300014429 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.C12 DOE Joint Genome Institute (JGI) 3300014429 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 864695 939 0 0 0 0 SRX3298872 Unrestricted 0.0 single_particle_sort 3300023381 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.M6 DOE Joint Genome Institute (JGI) 3300023381 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 537455 518 0 0 0 0 SRX4549219 Unrestricted 0.0 single_particle_sort 3300033322 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.N5 DOE Joint Genome Institute (JGI) 3300033322 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 376832 424 0 0 0 0 SRX7630492 Unrestricted 0.0 single_particle_sort 3300023888 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.L14 DOE Joint Genome Institute (JGI) 3300023888 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 920403 869 1 0 1 0 SRX4523761 Unrestricted 0.0 single_particle_sort 3300038188 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.E11 DOE Joint Genome Institute (JGI) 3300038188 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 512560 651 0 0 0 0 SRX9411809 Unrestricted 0.0 single_particle_sort 3300016377 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Omnitrophica bacterium SCGC_AG-278-M16 DOE Joint Genome Institute (JGI) 3300016377 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 832140 887 1 0 1 0 SRX3578421 Unrestricted 0.0 single_particle_sort 3300041132 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.H21 DOE Joint Genome Institute (JGI) 3300041132 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 69081 84 1 0 1 0 SRX9669575 Unrestricted 0.0 single_particle_sort 3300041595 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.L14 DOE Joint Genome Institute (JGI) 3300041595 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 781235 887 0 0 0 0 SRX10044854 Unrestricted 0.0 single_particle_sort 3300024003 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.G11 DOE Joint Genome Institute (JGI) 3300024003 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 2962049 2775 1 0 1 0 SRX4520680 Unrestricted 0.0 single_particle_sort 3300019895 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-M13 DOE Joint Genome Institute (JGI) 3300019895 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 31884 47 1 0 1 0 SRX4663363 Unrestricted 0.0 single_particle_sort 3300035485 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_H19 DOE Joint Genome Institute (JGI) 3300035485 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 21616 29 0 0 0 0 SRX9540490 Unrestricted 0.0 single_particle_sort 3300032604 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.J10 DOE Joint Genome Institute (JGI) 3300032604 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 457233 500 1 0 1 0 SRX6429445 Unrestricted 0.0 single_particle_sort 3300019695 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG-582-A06 DOE Joint Genome Institute (JGI) 3300019695 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 790818 874 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300024103 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.L5 DOE Joint Genome Institute (JGI) 3300024103 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1729105 1830 1 0 1 0 SRX4519547 Unrestricted 0.0 single_particle_sort 3300015475 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-G21 DOE Joint Genome Institute (JGI) 3300015475 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 185770 225 0 0 0 0 SRX3560313 Unrestricted 0.0 single_particle_sort 3300023362 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.L13 DOE Joint Genome Institute (JGI) 3300023362 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 1664269 1789 1 0 1 0 SRX4548819 Unrestricted 0.0 single_particle_sort 3300022040 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - Candidate_division_AC1_(TA06)_bacterium_AG-188-E16 DOE Joint Genome Institute (JGI) 3300022040 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater, Deep subsurface Drilled well/Borehole groundwater -28.317 27.772 973479 996 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300021708 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.D6 DOE Joint Genome Institute (JGI) 3300021708 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 372604 430 0 0 0 0 SRX4009592 Unrestricted 0.0 single_particle_sort 3300016477 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - SAR46_bacterium_SCGC_AG-640-L10 DOE Joint Genome Institute (JGI) 3300016477 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 1609625 1521 0 0 0 0 SRX3784277 Unrestricted 0.0 single_particle_sort 3300023527 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.K20 DOE Joint Genome Institute (JGI) 3300023527 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 947341 1048 1 0 1 0 SRX4548450 Unrestricted 0.0 single_particle_sort 3300033192 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.N16 DOE Joint Genome Institute (JGI) 3300033192 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 430558 475 1 0 0 0 SRX7630249 Unrestricted 0.0 single_particle_sort 3300038053 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.K14 DOE Joint Genome Institute (JGI) 3300038053 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 20236 38 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033909 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.L16 DOE Joint Genome Institute (JGI) 3300033909 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 538703 620 1 0 1 0 SRX7626533 Unrestricted 0.0 single_particle_sort 3300023653 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.H17 DOE Joint Genome Institute (JGI) 3300023653 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 269056 320 0 0 0 0 SRX4415617 Unrestricted 0.0 single_particle_sort 3300023943 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.J10 DOE Joint Genome Institute (JGI) 3300023943 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 1123400 1228 1 0 2 0 SRX4525360 Unrestricted 0.0 single_particle_sort 3300033422 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.H4 DOE Joint Genome Institute (JGI) 3300033422 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 212865 254 0 0 0 0 SRX7630275 Unrestricted 0.0 single_particle_sort 3300014329 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.D17 DOE Joint Genome Institute (JGI) 3300014329 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 623138 767 1 0 2 0 SRX3366834 Unrestricted 0.0 single_particle_sort 3300024374 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.H9 DOE Joint Genome Institute (JGI) 3300024374 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 86724 120 0 0 0 0 SRX4547813 Unrestricted 0.0 single_particle_sort 3300016202 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Omnitrophica bacterium SCGC_AG-578-K10 DOE Joint Genome Institute (JGI) 3300016202 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 254740 283 1 0 0 0 SRX3579265 Unrestricted 0.0 single_particle_sort 3300023853 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.D19 DOE Joint Genome Institute (JGI) 3300023853 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 726919 697 0 0 0 0 SRX4389908 Unrestricted 0.0 single_particle_sort 3300022968 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.J4 DOE Joint Genome Institute (JGI) 3300022968 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 537205 611 1 0 1 0 SRX4454501 Unrestricted 0.0 single_particle_sort 3300026582 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-L06 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026582 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 7806 12 0 0 0 0 0.0 single_particle_sort 3300023787 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.L16 DOE Joint Genome Institute (JGI) 3300023787 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 309034 349 0 0 0 0 SRX4501383 Unrestricted 0.0 single_particle_sort 3300023976 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.C10 DOE Joint Genome Institute (JGI) 3300023976 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1613123 1799 0 0 0 0 SRX4519522 Unrestricted 0.0 single_particle_sort 3300041616 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.G18 DOE Joint Genome Institute (JGI) 3300041616 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 3301164 2910 1 0 1 0 SRX14833839 Unrestricted 0.0 single_particle_sort 3300048733 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_B10_SVS DOE Joint Genome Institute (JGI) 3300048733 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 33350 47 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015980 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacterium bacterium SCGC_AG-582-F11 DOE Joint Genome Institute (JGI) 3300015980 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 383931 446 1 0 0 0 SRX3579961 Unrestricted 0.0 single_particle_sort 3300013256 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.B13 DOE Joint Genome Institute (JGI) 3300013256 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 2238882 2122 1 0 1 0 SRX3366789 Unrestricted 0.0 single_particle_sort 3300018119 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_C21 DOE Joint Genome Institute (JGI) 3300018119 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 351309 313 0 0 0 0 SRX4646897 Unrestricted 0.0 single_particle_sort 3300016454 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Aminicenantes_bacterium_SCGC_AG-636-I14 DOE Joint Genome Institute (JGI) 3300016454 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Sediment Freshwater Unclassified Freshwater sediment 53.7598 107.9791 7.32 1460286 1422 1 0 1 0 SRX3784466 Unrestricted 0.0 single_particle_sort 3300010805 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_47_SCGC_AG-138-P13 DOE Joint Genome Institute (JGI) 3300010805 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 413276 481 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300023015 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - Cryomorphaceae bacterium JGI GBS_4_B9 DOE Joint Genome Institute (JGI) 3300023015 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 4276335 3886 2 0 2 0 Unrestricted 0.0 single_particle_sort 3300024797 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-F22 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024797 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 197529 246 0 0 0 0 0.0 single_particle_sort 3300035970 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.D21 DOE Joint Genome Institute (JGI) 3300035970 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 1252258 1349 1 0 1 0 SRX8853763 Unrestricted 0.0 single_particle_sort 3300018261 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_F20 DOE Joint Genome Institute (JGI) 3300018261 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 323457 375 0 0 0 0 SRX4652731 Unrestricted 0.0 single_particle_sort 3300019516 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from Echinus Geyser water, Yellowstone National Park, Wyoming, United States - Geoarchaeota archaeon JGI 000156CP-C20 DOE Joint Genome Institute (JGI) 3300019516 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Acidic hot water 44.7225 -110.7014 1126899 1366 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300041363 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.L11 DOE Joint Genome Institute (JGI) 3300041363 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 980713 1055 0 0 0 0 SRX9648258 Unrestricted 0.0 single_particle_sort 3300050832 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_F15_SVS DOE Joint Genome Institute (JGI) 3300050832 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 178136 267 0 0 1 0 Restricted 0.0 single_particle_sort 3300034450 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.N17 DOE Joint Genome Institute (JGI) 3300034450 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 704504 789 0 0 0 0 SRX8389182 Unrestricted 0.0 single_particle_sort 3300013298 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - OP1 bacterium JGI GBS_3_B22 DOE Joint Genome Institute (JGI) 3300013298 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Near-boiling (>90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 400615 536 0 0 0 0 SRX3899721 Unrestricted 0.0 single_particle_sort 3300036008 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.N12 DOE Joint Genome Institute (JGI) 3300036008 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 946265 1010 0 0 0 0 SRX8857761 Unrestricted 0.0 single_particle_sort 3300041652 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.C5 DOE Joint Genome Institute (JGI) 3300041652 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 753202 841 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300036744 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.N15.redo DOE Joint Genome Institute (JGI) 3300036744 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 638278 727 1 0 0 0 SRX8910077 Unrestricted 0.0 single_particle_sort 3300019939 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-G22 DOE Joint Genome Institute (JGI) 3300019939 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 26559 34 0 0 0 0 SRX4655330 Unrestricted 0.0 single_particle_sort 3300035269 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_K8 DOE Joint Genome Institute (JGI) 3300035269 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 116742 138 1 0 0 0 SRX9537928 Unrestricted 0.0 single_particle_sort 3300019552 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-C13 DOE Joint Genome Institute (JGI) 3300019552 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 30699 42 0 0 0 0 SRX3556435 Unrestricted 0.0 single_particle_sort 3300049950 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_I13_SVS DOE Joint Genome Institute (JGI) 3300049950 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 269356 340 0 0 0 0 Restricted 0.0 single_particle_sort 3300037983 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.I9 DOE Joint Genome Institute (JGI) 3300037983 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 776018 827 0 0 1 0 SRX9411016 Unrestricted 0.0 single_particle_sort 3300071277 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_WGAX_A12_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071277 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 886137 906 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300032594 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.H22 DOE Joint Genome Institute (JGI) 3300032594 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 376867 375 1 0 1 0 SRX6431005 Unrestricted 0.0 single_particle_sort 3300023006 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - Fervidibacteria bacterium JGI MDM2 DC4-3-K22 DOE Joint Genome Institute (JGI) 3300023006 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 2414539 2418 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300010816 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.M20 DOE Joint Genome Institute (JGI) 3300010816 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 456667 545 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300024698 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-N03 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024698 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 96956 123 0 0 0 0 0.0 single_particle_sort 3300033248 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.M16 DOE Joint Genome Institute (JGI) 3300033248 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 318947 384 0 0 0 0 SRX7630659 Unrestricted 0.0 single_particle_sort 3300041605 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.C22 DOE Joint Genome Institute (JGI) 3300041605 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 900135 949 0 0 0 0 SRX14831304 Unrestricted 0.0 single_particle_sort 3300033885 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.K22 DOE Joint Genome Institute (JGI) 3300033885 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 378016 416 0 0 1 0 SRX7626813 Unrestricted 0.0 single_particle_sort 3300024612 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-I06 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024612 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 38216 50 0 0 0 0 0.0 single_particle_sort 3300024751 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-G07 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024751 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 135407 170 0 0 0 0 0.0 single_particle_sort 3300037996 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .H17 DOE Joint Genome Institute (JGI) 3300037996 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 1113857 1281 1 0 1 0 SRX9411507 Unrestricted 0.0 single_particle_sort 3300016354 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - Thaumarchaeota_archaeum_SCGC_AG-640-N15 DOE Joint Genome Institute (JGI) 3300016354 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 677704 844 0 0 1 0 SRX3784313 Unrestricted 0.0 single_particle_sort 3300050975 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_N19_SVS DOE Joint Genome Institute (JGI) 3300050975 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 35496 28 0 0 0 0 Restricted 0.0 single_particle_sort 3300034552 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.C10 DOE Joint Genome Institute (JGI) 3300034552 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 962329 1025 0 0 0 0 SRX8393331 Unrestricted 0.0 single_particle_sort 3300015709 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-3-F15 DOE Joint Genome Institute (JGI) 3300015709 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 111190 164 0 0 1 0 SRX3551370 Unrestricted 0.0 single_particle_sort 3300033685 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P9_P20 DOE Joint Genome Institute (JGI) 3300033685 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 9790 8 0 0 0 0 SRX7531542 Unrestricted 0.0 single_particle_sort 3300024812 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-B19 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024812 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 216512 281 0 0 0 0 0.0 single_particle_sort 3300019505 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Chloroflexi bacterium HL7711_P2H4 JGI 000147CP-E21 DOE Joint Genome Institute (JGI) 3300019505 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 634642 610 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300024391 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Burkholderia bacterium JGI PFNR15_F11 DOE Joint Genome Institute (JGI) 3300024391 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 237257 289 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300035822 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0813.Sybr.01.J15 DOE Joint Genome Institute (JGI) 3300035822 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 1217333 1282 2 0 5 0 SRX8894177 Unrestricted 0.0 single_particle_sort 3300010852 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Anoxic lake water microbial communities from Lake Kivu, Rwanda - MDM2.Kivu325.minimeta.G3 DOE Joint Genome Institute (JGI) 3300010852 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Unclassified Anoxic lake water -2.0288 29.1756 2699169 2840 2 0 2 0 Unrestricted 0.0 single_particle_sort 3300038272 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.J22 DOE Joint Genome Institute (JGI) 3300038272 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 339381 431 0 0 1 0 SRX9411369 Unrestricted 0.0 single_particle_sort 3300048715 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_G16_SVS DOE Joint Genome Institute (JGI) 3300048715 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 44570 60 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300041317 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.D11 DOE Joint Genome Institute (JGI) 3300041317 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 739794 809 1 0 2 0 SRX9646834 Unrestricted 0.0 single_particle_sort 3300024656 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-O22 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024656 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 73173 92 0 0 0 0 0.0 single_particle_sort 3300023133 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.K19 DOE Joint Genome Institute (JGI) 3300023133 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 414778 515 1 0 2 0 SRX4509052 Unrestricted 0.0 single_particle_sort 3300037958 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.E15 DOE Joint Genome Institute (JGI) 3300037958 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 717331 918 0 0 1 0 SRX9411017 Unrestricted 0.0 single_particle_sort 3300018282 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_K11 DOE Joint Genome Institute (JGI) 3300018282 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 959767 1013 0 0 0 0 SRX4652199 Unrestricted 0.0 single_particle_sort 3300023344 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.C21 DOE Joint Genome Institute (JGI) 3300023344 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 830605 955 1 0 1 0 SRX4520610 Unrestricted 0.0 single_particle_sort 3300019450 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent microbial mat, Guaymas Basin, Mexico - 6A_4862_10_02 DOE Joint Genome Institute (JGI) 3300019450 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.001 -110.5998 13570208 14599 2 0 4 0 SRX3974051 Unrestricted 0.0 single_particle_sort 3300041165 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.E6 DOE Joint Genome Institute (JGI) 3300041165 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 271432 281 0 0 0 0 SRX9653914 Unrestricted 0.0 single_particle_sort 3300019408 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16008 DOE Joint Genome Institute (JGI) 3300019408 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 1856872 1880 1 0 1 0 SRX3985614 Unrestricted 0.0 single_particle_sort 3300035737 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.E21 DOE Joint Genome Institute (JGI) 3300035737 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 750311 815 0 0 0 0 SRX8857426 Unrestricted 0.0 single_particle_sort 3300016570 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown_bacterium_SCGC_AG-490-O22 DOE Joint Genome Institute (JGI) 3300016570 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.49 1511337 1677 1 0 1 0 SRX3781587 Unrestricted 0.0 single_particle_sort 3300023420 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.H9 DOE Joint Genome Institute (JGI) 3300023420 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 244507 271 0 0 0 0 SRX4548972 Unrestricted 0.0 single_particle_sort 3300036720 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.F4.redo DOE Joint Genome Institute (JGI) 3300036720 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 710522 847 0 0 1 0 SRX8905041 Unrestricted 0.0 single_particle_sort 3300023866 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.K6 DOE Joint Genome Institute (JGI) 3300023866 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 677245 748 0 0 0 0 SRX4525831 Unrestricted 0.0 single_particle_sort 3300034706 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.1.J9 DOE Joint Genome Institute (JGI) 3300034706 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 2090692 2236 1 0 1 0 SRX8390426 Unrestricted 0.0 single_particle_sort 3300037900 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.L20 DOE Joint Genome Institute (JGI) 3300037900 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 506989 535 0 0 0 0 SRX9409783 Unrestricted 0.0 single_particle_sort 3300051146 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_C21_SVS DOE Joint Genome Institute (JGI) 3300051146 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 180895 203 0 0 0 0 Restricted 0.0 single_particle_sort 3300038066 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.F6 DOE Joint Genome Institute (JGI) 3300038066 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 267065 290 0 0 0 0 SRX9411440 Unrestricted 0.0 single_particle_sort 3300016372 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacterium bacterium SCGC_AG-582-J07 DOE Joint Genome Institute (JGI) 3300016372 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 864349 876 1 0 1 0 SRX3580009 Unrestricted 0.0 single_particle_sort 3300051073 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_P6_SVS DOE Joint Genome Institute (JGI) 3300051073 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 49149 72 0 0 0 0 Restricted 0.0 single_particle_sort 3300041137 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.G5 DOE Joint Genome Institute (JGI) 3300041137 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1799291 1879 1 0 1 0 SRX9668801 Unrestricted 0.0 single_particle_sort 3300035765 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.D6 DOE Joint Genome Institute (JGI) 3300035765 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 411684 454 1 0 1 0 SRX8857991 Unrestricted 0.0 single_particle_sort 3300015936 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-K22 DOE Joint Genome Institute (JGI) 3300015936 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 293894 387 0 0 0 0 SRX3560722 Unrestricted 0.0 single_particle_sort 3300034574 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.H18 DOE Joint Genome Institute (JGI) 3300034574 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 952740 1039 0 0 0 0 SRX8393500 Unrestricted 0.0 single_particle_sort 3300024779 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-N21 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024779 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 177121 216 0 0 0 0 0.0 single_particle_sort 3300033327 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.E10 DOE Joint Genome Institute (JGI) 3300033327 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 1349738 1265 0 0 0 0 SRX7630537 Unrestricted 0.0 single_particle_sort 3300022993 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - S2R-29 bacterium JGI MDM2 DC4-3-C19 DOE Joint Genome Institute (JGI) 3300022993 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 923569 957 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300018439 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_G4 DOE Joint Genome Institute (JGI) 3300018439 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 295428 303 0 0 0 0 SRX4652798 Unrestricted 0.0 single_particle_sort 3300034733 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P9_F15 DOE Joint Genome Institute (JGI) 3300034733 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 2524 3 0 0 0 0 SRX8136717 Unrestricted 0.0 single_particle_sort 3300038254 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.I12 DOE Joint Genome Institute (JGI) 3300038254 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 543349 624 1 0 1 0 SRX9411186 Unrestricted 0.0 single_particle_sort 3300023467 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.K9 DOE Joint Genome Institute (JGI) 3300023467 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 813843 987 0 0 0 0 SRX4548526 Unrestricted 0.0 single_particle_sort 3300015519 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-H11 DOE Joint Genome Institute (JGI) 3300015519 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 333081 417 0 0 0 0 SRX3549979 Unrestricted 0.0 single_particle_sort 3300034601 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.M19 DOE Joint Genome Institute (JGI) 3300034601 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 766935 795 1 0 1 0 SRX8394704 Unrestricted 0.0 single_particle_sort 3300036735 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.I11.redo DOE Joint Genome Institute (JGI) 3300036735 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 858033 927 0 0 0 0 SRX8907548 Unrestricted 0.0 single_particle_sort 3300033360 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.H7 DOE Joint Genome Institute (JGI) 3300033360 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 366505 437 0 0 0 0 SRX7627204 Unrestricted 0.0 single_particle_sort 3300050828 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_E22_SVS DOE Joint Genome Institute (JGI) 3300050828 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 61010 79 0 0 0 0 Restricted 0.0 single_particle_sort 3300015903 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-F20 DOE Joint Genome Institute (JGI) 3300015903 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 290040 355 0 0 0 0 SRX3563247 Unrestricted 0.0 single_particle_sort 3300071188 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_edMDA_A08_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071188 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 2972484 2732 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300021802 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.I9 DOE Joint Genome Institute (JGI) 3300021802 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 626445 705 1 0 0 0 SRX3989667 Unrestricted 0.0 single_particle_sort 3300023761 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.L9 DOE Joint Genome Institute (JGI) 3300023761 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 280128 341 1 0 0 0 SRX4519549 Unrestricted 0.0 single_particle_sort 3300022986 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - EM3 bacterium JGI MDM2 DC4-3-E16 DOE Joint Genome Institute (JGI) 3300022986 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 795609 988 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300021655 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.L6 DOE Joint Genome Institute (JGI) 3300021655 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 100360 126 0 0 0 0 SRX4009597 Unrestricted 0.0 single_particle_sort 3300034715 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.2.M20 DOE Joint Genome Institute (JGI) 3300034715 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 2451933 2510 1 0 1 0 SRX8390478 Unrestricted 0.0 single_particle_sort 3300033581 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P1_M3 DOE Joint Genome Institute (JGI) 3300033581 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 14618 13 0 0 0 0 SRX7529688 Unrestricted 0.0 single_particle_sort 3300023522 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.J5 DOE Joint Genome Institute (JGI) 3300023522 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 337101 414 0 0 0 0 SRX4548521 Unrestricted 0.0 single_particle_sort 3300035838 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0815.Sybr.01.K18 DOE Joint Genome Institute (JGI) 3300035838 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 378499 457 1 0 1 0 SRX8894639 Unrestricted 0.0 single_particle_sort 3300033197 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.E15 DOE Joint Genome Institute (JGI) 3300033197 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 659374 630 1 0 1 0 SRX7629298 Unrestricted 0.0 single_particle_sort 3300019601 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-3-K12 DOE Joint Genome Institute (JGI) 3300019601 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 67292 76 0 0 0 0 SRX3554208 Unrestricted 0.0 single_particle_sort 3300026587 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-F16 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026587 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 83506 89 0 0 0 0 0.0 single_particle_sort 3300023782 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.K9 DOE Joint Genome Institute (JGI) 3300023782 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 297313 322 0 0 0 0 SRX4548263 Unrestricted 0.0 single_particle_sort 3300050760 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_L3_SVS DOE Joint Genome Institute (JGI) 3300050760 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 66367 77 0 0 0 0 Restricted 0.0 single_particle_sort 3300033721 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P2_F17 DOE Joint Genome Institute (JGI) 3300033721 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 19138 26 0 0 0 0 SRX7525436 Unrestricted 0.0 single_particle_sort 3300023413 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.J15 DOE Joint Genome Institute (JGI) 3300023413 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 850566 918 1 0 1 0 SRX4519651 Unrestricted 0.0 single_particle_sort 3300016207 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Peregrinibacteria bacterium SCGC_AG-278-E08 DOE Joint Genome Institute (JGI) 3300016207 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 258313 293 1 0 0 0 SRX3578354 Unrestricted 0.0 single_particle_sort 3300023320 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.M11 DOE Joint Genome Institute (JGI) 3300023320 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 293824 288 1 0 1 0 SRX4548968 Unrestricted 0.0 single_particle_sort 3300036050 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_B21 DOE Joint Genome Institute (JGI) 3300036050 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 41242 50 0 0 0 0 SRX10045846 Unrestricted 0.0 single_particle_sort 3300019801 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-K13 DOE Joint Genome Institute (JGI) 3300019801 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 273679 318 0 0 0 0 SRX4663340 Unrestricted 0.0 single_particle_sort 3300023335 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.K19 DOE Joint Genome Institute (JGI) 3300023335 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 798066 847 1 0 1 0 SRX4520317 Unrestricted 0.0 single_particle_sort 3300033460 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.F5 DOE Joint Genome Institute (JGI) 3300033460 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 333341 384 0 0 0 0 SRX7630274 Unrestricted 0.0 single_particle_sort 3300022295 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Acetothermia_bacterium_SCGC_AH-151-C03 Bigelow Laboratory for Ocean Sciences 3300022295 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 1109708 1192 1 0 1 0 0.0 single_particle_sort 3300023367 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.I14 DOE Joint Genome Institute (JGI) 3300023367 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 2448911 2584 1 0 1 0 SRX4519655 Unrestricted 0.0 single_particle_sort 3300019574 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-J05 DOE Joint Genome Institute (JGI) 3300019574 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 50568 56 0 0 0 0 SRX3560714 Unrestricted 0.0 single_particle_sort 3300018339 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Syntrophaceae_bacterium_SCGC_AG-650-O17 DOE Joint Genome Institute (JGI) 3300018339 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1477559 1448 1 0 1 0 SRX3976986 Unrestricted 0.0 single_particle_sort 3300050904 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_K21_SVS DOE Joint Genome Institute (JGI) 3300050904 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 22672 46 0 0 0 0 Restricted 0.0 single_particle_sort 3300050750 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_A9_SVS DOE Joint Genome Institute (JGI) 3300050750 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 60270 75 0 0 0 0 Restricted 0.0 single_particle_sort 3300021637 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.M14 DOE Joint Genome Institute (JGI) 3300021637 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 60532 83 0 0 0 0 SRX4009962 Unrestricted 0.0 single_particle_sort 3300015629 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Gongxiaoshe hot spring sediment, Tengchong, China - GXS.2.2014 1201 MDM2 GXS p2 16S.N22.double-peak DOE Joint Genome Institute (JGI) 3300015629 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 25.4401 98.4408 268615 344 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300036060 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_E6 DOE Joint Genome Institute (JGI) 3300036060 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 196994 243 1 0 2 0 SRX10045901 Unrestricted 0.0 single_particle_sort 3300016347 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Peregrinibacteria bacterium SCGC_AG-574-G18 DOE Joint Genome Institute (JGI) 3300016347 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 819187 830 0 0 1 0 SRX3578831 Unrestricted 0.0 single_particle_sort 3300018279 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_J13 DOE Joint Genome Institute (JGI) 3300018279 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 1071908 1005 0 0 1 0 SRX4646893 Unrestricted 0.0 single_particle_sort 3300021837 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.G7 DOE Joint Genome Institute (JGI) 3300021837 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 3231952 3350 1 0 1 0 SRX3989443 Unrestricted 0.0 single_particle_sort 3300021665 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.H12 DOE Joint Genome Institute (JGI) 3300021665 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 165436 213 0 0 0 0 SRX4009656 Unrestricted 0.0 single_particle_sort 3300033505 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.N6 DOE Joint Genome Institute (JGI) 3300033505 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 346115 392 0 0 0 0 SRX7630277 Unrestricted 0.0 single_particle_sort 3300015829 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-D05 DOE Joint Genome Institute (JGI) 3300015829 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 268693 325 0 0 0 0 SRX3560663 Unrestricted 0.0 single_particle_sort 3300018148 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-C08 DOE Joint Genome Institute (JGI) 3300018148 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 542052 565 0 0 0 0 SRX3974464 Unrestricted 0.0 single_particle_sort 3300019685 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-574-J06 DOE Joint Genome Institute (JGI) 3300019685 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 608031 713 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300036027 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_G20 DOE Joint Genome Institute (JGI) 3300036027 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 29271 46 0 0 0 0 SRX10046796 Unrestricted 0.0 single_particle_sort 3300023357 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.J19 DOE Joint Genome Institute (JGI) 3300023357 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1551821 1698 1 0 1 0 SRX4520369 Unrestricted 0.0 single_particle_sort 3300035271 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_G9 DOE Joint Genome Institute (JGI) 3300035271 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 147313 197 0 0 0 0 SRX9537933 Unrestricted 0.0 single_particle_sort 3300023121 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.H9 DOE Joint Genome Institute (JGI) 3300023121 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 192121 248 0 0 0 0 SRX4508535 Unrestricted 0.0 single_particle_sort 3300023797 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.J6 DOE Joint Genome Institute (JGI) 3300023797 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 343466 412 0 0 0 0 SRX4524379 Unrestricted 0.0 single_particle_sort 3300026592 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-G21 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026592 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 89584 109 0 0 0 0 0.0 single_particle_sort 3300033450 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.M6 DOE Joint Genome Institute (JGI) 3300033450 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 779427 853 2 0 2 0 SRX7630285 Unrestricted 0.0 single_particle_sort 3300041102 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.E11 DOE Joint Genome Institute (JGI) 3300041102 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 605299 618 0 0 0 0 SRX9654410 Unrestricted 0.0 single_particle_sort 3300010725 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.04.M22 DOE Joint Genome Institute (JGI) 3300010725 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 66913 82 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035755 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.J13 DOE Joint Genome Institute (JGI) 3300035755 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 847491 954 1 0 1 0 SRX8857656 Unrestricted 0.0 single_particle_sort 3300038056 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.G20 DOE Joint Genome Institute (JGI) 3300038056 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 603149 662 1 0 1 0 SRX9411384 Unrestricted 0.0 single_particle_sort 3300015014 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.L18 DOE Joint Genome Institute (JGI) 3300015014 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 313527 381 1 0 1 0 Restricted 0.0 single_particle_sort 3300023946 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.L13 DOE Joint Genome Institute (JGI) 3300023946 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 1279321 1263 0 0 0 0 SRX4523919 Unrestricted 0.0 single_particle_sort 3300032634 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.C19 DOE Joint Genome Institute (JGI) 3300032634 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 371567 405 0 0 0 0 SRX6431003 Unrestricted 0.0 single_particle_sort 3300016447 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_C18 DOE Joint Genome Institute (JGI) 3300016447 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1362420 1357 0 0 0 0 SRX4065912 Unrestricted 0.0 single_particle_sort 3300041155 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.H16 DOE Joint Genome Institute (JGI) 3300041155 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 665303 653 0 0 0 0 SRX9674638 Unrestricted 0.0 single_particle_sort 3300024133 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Pseudomonas bacterium JGI PFNR15_H21 DOE Joint Genome Institute (JGI) 3300024133 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 674644 713 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300033219 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.E22 DOE Joint Genome Institute (JGI) 3300033219 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 640060 628 0 0 0 0 SRX7630267 Unrestricted 0.0 single_particle_sort 3300015114 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-J09 DOE Joint Genome Institute (JGI) 3300015114 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 341571 430 0 0 1 0 SRX3578325 Unrestricted 0.0 single_particle_sort 3300023856 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.N10 DOE Joint Genome Institute (JGI) 3300023856 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 630542 707 1 0 1 0 SRX4524488 Unrestricted 0.0 single_particle_sort 3300048721 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_I19_SVS DOE Joint Genome Institute (JGI) 3300048721 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 76706 81 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300021738 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.E16 DOE Joint Genome Institute (JGI) 3300021738 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 639897 713 0 0 1 0 SRX3990132 Unrestricted 0.0 single_particle_sort 3300023973 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.I17 DOE Joint Genome Institute (JGI) 3300023973 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1647988 1755 1 0 2 0 SRX4519526 Unrestricted 0.0 single_particle_sort 3300038012 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.F18 DOE Joint Genome Institute (JGI) 3300038012 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 1391013 1556 0 0 0 0 SRX9410330 Unrestricted 0.0 single_particle_sort 3300038098 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .E18 DOE Joint Genome Institute (JGI) 3300038098 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 579172 704 0 0 0 0 SRX9411568 Unrestricted 0.0 single_particle_sort 3300033350 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.N9 DOE Joint Genome Institute (JGI) 3300033350 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 270015 311 0 0 0 0 SRX7630536 Unrestricted 0.0 single_particle_sort 3300015445 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-L21 DOE Joint Genome Institute (JGI) 3300015445 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 96828 147 0 0 0 0 SRX3549914 Unrestricted 0.0 single_particle_sort 3300023751 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.L22 DOE Joint Genome Institute (JGI) 3300023751 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 127948 166 0 0 0 0 SRX4548022 Unrestricted 0.0 single_particle_sort 3300033939 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.K11 DOE Joint Genome Institute (JGI) 3300033939 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 317956 383 1 0 1 0 SRX7626297 Unrestricted 0.0 single_particle_sort 3300023612 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.D13 DOE Joint Genome Institute (JGI) 3300023612 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 741024 852 0 0 0 0 SRX4415694 Unrestricted 0.0 single_particle_sort 3300016232 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown archaeum SCGC_AG-574-P06 DOE Joint Genome Institute (JGI) 3300016232 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 323310 468 0 0 0 0 SRX3579172 Unrestricted 0.0 single_particle_sort 3300038198 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.H11 DOE Joint Genome Institute (JGI) 3300038198 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 755372 897 0 0 0 0 SRX9411824 Unrestricted 0.0 single_particle_sort 3300038112 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .F6 DOE Joint Genome Institute (JGI) 3300038112 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 209835 263 0 0 0 0 SRX9411653 Unrestricted 0.0 single_particle_sort 3300033790 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_A5 DOE Joint Genome Institute (JGI) 3300033790 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 15588 22 0 0 0 0 SRX7525334 Unrestricted 0.0 single_particle_sort 3300036757 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.E22.redo DOE Joint Genome Institute (JGI) 3300036757 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 857337 1008 0 0 0 0 SRX8910427 Unrestricted 0.0 single_particle_sort 3300023457 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.K15 DOE Joint Genome Institute (JGI) 3300023457 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 337480 377 0 0 1 0 SRX4548584 Unrestricted 0.0 single_particle_sort 3300010730 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_11_SCGC_AG-159-D11 DOE Joint Genome Institute (JGI) 3300010730 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 88548 109 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300038264 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.05.F19 DOE Joint Genome Institute (JGI) 3300038264 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 43793 58 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023898 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.N14 DOE Joint Genome Institute (JGI) 3300023898 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 956531 916 1 0 1 0 SRX4501900 Unrestricted 0.0 single_particle_sort 3300023812 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.C20 DOE Joint Genome Institute (JGI) 3300023812 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 372618 480 0 0 0 0 SRX4390372 Unrestricted 0.0 single_particle_sort 3300019427 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16040 DOE Joint Genome Institute (JGI) 3300019427 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 2364077 2510 1 0 1 0 SRX3987084 Unrestricted 0.0 single_particle_sort 3300034562 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.E20 DOE Joint Genome Institute (JGI) 3300034562 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 204309 238 0 0 0 0 SRX8393458 Unrestricted 0.0 single_particle_sort 3300010793 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.04.N19 DOE Joint Genome Institute (JGI) 3300010793 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 307311 414 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300016364 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-P14 DOE Joint Genome Institute (JGI) 3300016364 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 764242 863 1 0 1 0 SRX3580054 Unrestricted 0.0 single_particle_sort 3300019581 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-O20 DOE Joint Genome Institute (JGI) 3300019581 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 35072 59 0 0 0 0 SRX3903179 Unrestricted 0.0 single_particle_sort 3300041388 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.E15 DOE Joint Genome Institute (JGI) 3300041388 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1298191 1309 1 0 1 0 SRX9646195 Unrestricted 0.0 single_particle_sort 3300026607 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-P23 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026607 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 113015 151 0 0 0 0 0.0 single_particle_sort 3300018297 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_K5 DOE Joint Genome Institute (JGI) 3300018297 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 1122945 1132 1 0 1 0 SRX4647022 Unrestricted 0.0 single_particle_sort 3300033801 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.K4 DOE Joint Genome Institute (JGI) 3300033801 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 373168 431 1 0 2 0 SRX7626142 Unrestricted 0.0 single_particle_sort 3300024761 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-P04 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024761 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 138248 186 0 0 0 0 0.0 single_particle_sort 3300033308 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.F5 DOE Joint Genome Institute (JGI) 3300033308 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 282136 324 0 0 0 0 SRX7627183 Unrestricted 0.0 single_particle_sort 3300037968 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.K6 DOE Joint Genome Institute (JGI) 3300037968 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 32824 40 0 0 0 0 SRX9411499 Unrestricted 0.0 single_particle_sort 3300016489 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Sorted cell/s from deep shales in West Virginia, USA - MahaSR_06_F12 DOE Joint Genome Institute (JGI) 3300016489 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back deep subsurface 39.6017 -79.9761 106826 133 0 0 0 0 SRX3577107 Unrestricted 0.0 single_particle_sort 3300015143 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-M08 DOE Joint Genome Institute (JGI) 3300015143 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 622143 755 0 0 0 0 SRX3578334 Unrestricted 0.0 single_particle_sort 3300033706 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P2_I4 DOE Joint Genome Institute (JGI) 3300033706 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 2935 7 0 0 0 0 SRX7525381 Unrestricted 0.0 single_particle_sort 3300024190 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Pedobacter bacterium JGI PFNR15_H21 DOE Joint Genome Institute (JGI) 3300024190 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 764119 864 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300041229 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.J5 DOE Joint Genome Institute (JGI) 3300041229 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 684459 725 0 0 0 0 SRX9653321 Unrestricted 0.0 single_particle_sort 3300019626 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-P04 DOE Joint Genome Institute (JGI) 3300019626 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 70941 99 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033574 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.M11 DOE Joint Genome Institute (JGI) 3300033574 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 296133 322 0 0 0 0 SRX7626289 Unrestricted 0.0 single_particle_sort 3300050807 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_O10_SVS DOE Joint Genome Institute (JGI) 3300050807 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 60867 80 0 0 0 0 Restricted 0.0 single_particle_sort 3300024666 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-I13 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024666 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 63847 97 0 0 0 0 0.0 single_particle_sort 3300024090 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.L13 DOE Joint Genome Institute (JGI) 3300024090 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1119005 1146 1 0 1 0 SRX4519528 Unrestricted 0.0 single_particle_sort 3300023779 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.M18 DOE Joint Genome Institute (JGI) 3300023779 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 311973 327 1 0 1 0 SRX4549588 Unrestricted 0.0 single_particle_sort 3300015548 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-K15 DOE Joint Genome Institute (JGI) 3300015548 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 570581 635 1 0 1 0 SRX3549980 Unrestricted 0.0 single_particle_sort 3300015043 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.E10 DOE Joint Genome Institute (JGI) 3300015043 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 484000 571 1 0 1 0 Restricted 0.0 single_particle_sort 3300041353 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.M20 DOE Joint Genome Institute (JGI) 3300041353 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1389836 1332 0 0 0 0 SRX9647059 Unrestricted 0.0 single_particle_sort 3300018251 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_C21 DOE Joint Genome Institute (JGI) 3300018251 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 843155 830 0 0 1 0 SRX4652590 Unrestricted 0.0 single_particle_sort 3300034460 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.F13 DOE Joint Genome Institute (JGI) 3300034460 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 521618 549 0 0 0 0 SRX8389548 Unrestricted 0.0 single_particle_sort 3300034626 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.H13 DOE Joint Genome Institute (JGI) 3300034626 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1528967 1601 1 0 1 0 SRX8390600 Unrestricted 0.0 single_particle_sort 3300032645 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.I6 DOE Joint Genome Institute (JGI) 3300032645 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 214900 264 0 0 0 0 SRX6431851 Unrestricted 0.0 single_particle_sort 3300024367 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.H19 DOE Joint Genome Institute (JGI) 3300024367 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 45238 62 0 0 0 0 SRX4547863 Unrestricted 0.0 single_particle_sort 3300036600 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.I5 DOE Joint Genome Institute (JGI) 3300036600 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 1157079 1302 1 0 0 0 SRX8901744 Unrestricted 0.0 single_particle_sort 3300021105 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted archaeal cell/s from hot spring water in Nymph Lake, Yellowstone National Park, Wyoming, USA - Nanoarchaeota archaeon AD-903-P16 Oregon State University 3300021105 Metagenome - Single Particle Sort Spades v2.2.1 Manuscript to be submitted soon No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring water 44.75187 -110.7288 192530 264 1 0 1 0 0.0 single_particle_sort 3300071242 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_edMDA_F08_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071242 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 1573711 1703 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300016228 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Parcubacteria bacterium SCGC_AG-278-O06 DOE Joint Genome Institute (JGI) 3300016228 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 385562 458 0 0 1 0 SRX3578537 Unrestricted 0.0 single_particle_sort 3300033715 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P1_L11 DOE Joint Genome Institute (JGI) 3300033715 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 2965 3 0 0 0 0 SRX7525398 Unrestricted 0.0 single_particle_sort 3300049960 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_J7_SVS DOE Joint Genome Institute (JGI) 3300049960 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 129429 181 0 0 0 0 Restricted 0.0 single_particle_sort 3300019562 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-J21 DOE Joint Genome Institute (JGI) 3300019562 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 30163 47 0 0 0 0 SRX3551341 Unrestricted 0.0 single_particle_sort 3300010786 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_16_SCGC_AG-159-E15 DOE Joint Genome Institute (JGI) 3300010786 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 268092 389 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300038247 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.I18 DOE Joint Genome Institute (JGI) 3300038247 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 542057 707 1 0 1 0 SRX9411155 Unrestricted 0.0 single_particle_sort 3300021722 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.I14 DOE Joint Genome Institute (JGI) 3300021722 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 479040 571 0 0 0 0 SRX3990136 Unrestricted 0.0 single_particle_sort 3300024782 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-D04 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024782 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 179617 221 0 0 0 0 0.0 single_particle_sort 3300034721 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.3.I13 DOE Joint Genome Institute (JGI) 3300034721 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 1654148 1774 1 0 1 0 SRX8390539 Unrestricted 0.0 single_particle_sort 3300035259 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_K22 DOE Joint Genome Institute (JGI) 3300035259 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 81370 91 0 0 0 0 SRX9537812 Unrestricted 0.0 single_particle_sort 3300015434 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-C04 DOE Joint Genome Institute (JGI) 3300015434 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 88401 116 0 0 0 0 SRX3549920 Unrestricted 0.0 single_particle_sort 3300016389 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown archaeum SCGC_AG-578-K18 DOE Joint Genome Institute (JGI) 3300016389 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 722713 932 1 0 1 0 SRX3579277 Unrestricted 0.0 single_particle_sort 3300035924 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.H12 DOE Joint Genome Institute (JGI) 3300035924 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1282187 1360 1 0 1 0 SRX8862028 Unrestricted 0.0 single_particle_sort 3300033591 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_F10 DOE Joint Genome Institute (JGI) 3300033591 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 21047 23 0 0 0 0 SRX7525355 Unrestricted 0.0 single_particle_sort 3300071289 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_PTA_B04_scBac_plate.C DOE Joint Genome Institute (JGI) 3300071289 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 3901666 4036 7 0 4 0 Unrestricted 0.0 single_particle_sort 3300033187 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.H17 DOE Joint Genome Institute (JGI) 3300033187 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 490688 490 0 0 0 0 SRX7630247 Unrestricted 0.0 single_particle_sort 3300033610 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_H1 DOE Joint Genome Institute (JGI) 3300033610 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 22091 32 0 0 0 0 SRX7528840 Unrestricted 0.0 single_particle_sort 3300019438 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent microbial mat, Guaymas Basin, Mexico - 4D_dil_4869_18_12 DOE Joint Genome Institute (JGI) 3300019438 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.001 -110.5998 9739088 7663 1 0 1 0 SRX3973837 Unrestricted 0.0 single_particle_sort 3300035707 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_D10 DOE Joint Genome Institute (JGI) 3300035707 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 20069 27 0 0 0 0 SRX10045423 Unrestricted 0.0 single_particle_sort 3300022996 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - EM3 bacterium JGI MDM2 DC4-3-L18 DOE Joint Genome Institute (JGI) 3300022996 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 1135256 1325 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300037930 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.F9 DOE Joint Genome Institute (JGI) 3300037930 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 948464 1053 2 0 2 0 SRX9410325 Unrestricted 0.0 single_particle_sort 3300036022 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.C8 DOE Joint Genome Institute (JGI) 3300036022 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 377195 405 0 0 1 0 SRX8857988 Unrestricted 0.0 single_particle_sort 3300023352 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.J12 DOE Joint Genome Institute (JGI) 3300023352 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1198248 1291 1 0 1 0 SRX4520588 Unrestricted 0.0 single_particle_sort 3300015906 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-E19 DOE Joint Genome Institute (JGI) 3300015906 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 292510 360 0 0 0 0 SRX3560682 Unrestricted 0.0 single_particle_sort 3300010844 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_32_SCGC_AG-159-L03 DOE Joint Genome Institute (JGI) 3300010844 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 711468 954 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300041107 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.L11 DOE Joint Genome Institute (JGI) 3300041107 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 724243 721 0 0 1 0 SRX9654419 Unrestricted 0.0 single_particle_sort 3300026597 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-F09 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026597 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 63605 67 0 0 0 0 0.0 single_particle_sort 3300023792 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.E8 DOE Joint Genome Institute (JGI) 3300023792 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 337680 403 0 0 0 0 SRX4525359 Unrestricted 0.0 single_particle_sort 3300016342 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-E22 DOE Joint Genome Institute (JGI) 3300016342 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 707430 824 0 0 1 0 SRX3540070 Unrestricted 0.0 single_particle_sort 3300034544 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.H5 DOE Joint Genome Institute (JGI) 3300034544 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 357796 367 0 0 0 0 SRX8392459 Unrestricted 0.0 single_particle_sort 3300024749 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-A03 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024749 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 138597 165 0 0 0 0 0.0 single_particle_sort 3300023316 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.N9 DOE Joint Genome Institute (JGI) 3300023316 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 121711 126 0 0 0 0 SRX4548992 Unrestricted 0.0 single_particle_sort 3300021632 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.L11 DOE Joint Genome Institute (JGI) 3300021632 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 55475 70 0 0 0 0 SRX4009649 Unrestricted 0.0 single_particle_sort 3300023863 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.M9 DOE Joint Genome Institute (JGI) 3300023863 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 654412 733 0 0 0 0 SRX4389698 Unrestricted 0.0 single_particle_sort 3300034703 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.1.E20 DOE Joint Genome Institute (JGI) 3300034703 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 2344475 2473 1 0 1 0 SRX8390423 Unrestricted 0.0 single_particle_sort 3300022958 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.H12 DOE Joint Genome Institute (JGI) 3300022958 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 239618 304 0 0 1 0 SRX4417809 Unrestricted 0.0 single_particle_sort 3300038063 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.H9 DOE Joint Genome Institute (JGI) 3300038063 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 272207 321 0 0 1 0 SRX9411443 Unrestricted 0.0 single_particle_sort 3300051143 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_B14_SVS DOE Joint Genome Institute (JGI) 3300051143 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 33536 49 0 0 0 0 Restricted 0.0 single_particle_sort 3300037925 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.D4 DOE Joint Genome Institute (JGI) 3300037925 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 224843 291 0 0 0 0 SRX9410433 Unrestricted 0.0 single_particle_sort 3300015933 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Armatimonadetes bacterium SCGC_AG-657-K09 DOE Joint Genome Institute (JGI) 3300015933 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 347981 387 1 0 0 0 SRX3601458 Unrestricted 0.0 single_particle_sort 3300016540 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from underground thermal water from 5P borehole, Tomsk, Russia - unknown_archaeum_SCGC_AG-716-O13 DOE Joint Genome Institute (JGI) 3300016540 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole Groundwater 58.0758 82.8374 7.49-7.6 774733 769 0 0 0 0 SRX3782172 Unrestricted 0.0 single_particle_sort 3300051076 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 173_J10_SVS DOE Joint Genome Institute (JGI) 3300051076 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 105939 120 0 0 0 0 Restricted 0.0 single_particle_sort 3300022285 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - unknown_bacterium_SCGC_AH-151-G16 Bigelow Laboratory for Ocean Sciences 3300022285 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 1308192 1410 1 0 0 0 0.0 single_particle_sort 3300021832 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.E20 DOE Joint Genome Institute (JGI) 3300021832 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1466637 1678 0 0 0 0 SRX3989913 Unrestricted 0.0 single_particle_sort 3300023405 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.N10 DOE Joint Genome Institute (JGI) 3300023405 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 723796 718 2 0 2 0 SRX4338069 Unrestricted 0.0 single_particle_sort 3300023663 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.L22 DOE Joint Genome Institute (JGI) 3300023663 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 2002288 2251 1 0 1 0 SRX4547981 Unrestricted 0.0 single_particle_sort 3300019544 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-3-K18 DOE Joint Genome Institute (JGI) 3300019544 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 21820 37 0 0 0 0 SRX3554209 Unrestricted 0.0 single_particle_sort 3300023617 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.I5 DOE Joint Genome Institute (JGI) 3300023617 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 980347 1071 0 0 0 0 SRX4415434 Unrestricted 0.0 single_particle_sort 3300038017 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.G5 DOE Joint Genome Institute (JGI) 3300038017 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 736922 1048 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300049938 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_E6_SVS DOE Joint Genome Institute (JGI) 3300049938 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 30240 57 0 0 0 0 Restricted 0.0 single_particle_sort 3300019631 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-F05 DOE Joint Genome Institute (JGI) 3300019631 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 77998 107 0 0 0 0 SRX3562917 Unrestricted 0.0 single_particle_sort 3300035808 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_J13 DOE Joint Genome Institute (JGI) 3300035808 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 128553 164 0 0 0 0 SRX10045668 Unrestricted 0.0 single_particle_sort 3300023452 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.L4 DOE Joint Genome Institute (JGI) 3300023452 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 216389 256 0 0 1 0 SRX4548524 Unrestricted 0.0 single_particle_sort 3300041644 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.L17 DOE Joint Genome Institute (JGI) 3300041644 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1637662 1577 1 0 1 0 SRX14836435 Unrestricted 0.0 single_particle_sort 3300015220 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - Parcubacteria bacterium SCGC_AG-290-C06 DOE Joint Genome Institute (JGI) 3300015220 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 448720 487 1 0 0 0 SRX3578540 Unrestricted 0.0 single_particle_sort 3300023817 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.D17 DOE Joint Genome Institute (JGI) 3300023817 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 503532 504 0 0 0 0 SRX4549220 Unrestricted 0.0 single_particle_sort 3300036611 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.J9 DOE Joint Genome Institute (JGI) 3300036611 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 1638539 1840 1 0 1 0 SRX8902557 Unrestricted 0.0 single_particle_sort 3300016237 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-G21 DOE Joint Genome Institute (JGI) 3300016237 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 430455 508 0 0 0 0 SRX3562930 Unrestricted 0.0 single_particle_sort 3300015915 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-K16 DOE Joint Genome Institute (JGI) 3300015915 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 295492 371 0 0 0 0 SRX3563847 Unrestricted 0.0 single_particle_sort 3300019831 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-I17 DOE Joint Genome Institute (JGI) 3300019831 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 63363 71 0 0 0 0 SRX4663273 Unrestricted 0.0 single_particle_sort 3300038117 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .M4 DOE Joint Genome Institute (JGI) 3300038117 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 464304 557 0 0 0 0 SRX9411654 Unrestricted 0.0 single_particle_sort 3300036752 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.J20.redo DOE Joint Genome Institute (JGI) 3300036752 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 844904 895 0 0 0 0 SRX8910343 Unrestricted 0.0 single_particle_sort 3300022983 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.H19 DOE Joint Genome Institute (JGI) 3300022983 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 522002 620 1 0 0 0 SRX4417808 Unrestricted 0.0 single_particle_sort 3300034438 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.D21 DOE Joint Genome Institute (JGI) 3300034438 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 321695 358 0 0 0 0 SRX8389178 Unrestricted 0.0 single_particle_sort 3300015235 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - unknown bacterium SCGC_AG-290-D20 DOE Joint Genome Institute (JGI) 3300015235 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 822664 835 0 0 1 0 SRX3578552 Unrestricted 0.0 single_particle_sort 3300023416 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.F20 DOE Joint Genome Institute (JGI) 3300023416 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1055590 1070 1 0 1 0 SRX4520609 Unrestricted 0.0 single_particle_sort 3300071198 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_edMDA_B09_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071198 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 2621805 2559 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300018309 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-E10 DOE Joint Genome Institute (JGI) 3300018309 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1175903 1210 0 0 0 0 SRX3978447 Unrestricted 0.0 single_particle_sort 3300050934 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-P03 DOE Joint Genome Institute (JGI) 3300050934 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 1429165 1514 1 0 1 0 Restricted 0.0 single_particle_sort 3300071264 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_WGAX_G12_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071264 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 589207 577 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300016442 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Aminicenantes_bacterium_SCGC_AG-636-M13 DOE Joint Genome Institute (JGI) 3300016442 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Sediment Freshwater Unclassified Freshwater sediment 53.7598 107.9791 7.32 1303173 1301 1 0 1 0 SRX3784464 Unrestricted 0.0 single_particle_sort 3300021628 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.F14 DOE Joint Genome Institute (JGI) 3300021628 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 44852 69 0 0 1 0 SRX4009958 Unrestricted 0.0 single_particle_sort 3300024688 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-N09 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024688 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 86783 115 0 0 0 0 0.0 single_particle_sort 3300028425 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.G20 DOE Joint Genome Institute (JGI) 3300028425 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 394510 453 0 0 0 0 SRX5085296 Unrestricted 0.0 single_particle_sort 3300033895 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.N13 DOE Joint Genome Institute (JGI) 3300033895 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 177166 209 0 0 0 0 SRX7626315 Unrestricted 0.0 single_particle_sort 3300032584 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.N21 DOE Joint Genome Institute (JGI) 3300032584 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 1453994 1184 0 0 0 0 SRX6451979 Unrestricted 0.0 single_particle_sort 3300010835 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_45_SCGC_AG-159-O19 DOE Joint Genome Institute (JGI) 3300010835 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 624185 792 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300024888 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.05.I18 DOE Joint Genome Institute (JGI) 3300024888 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 875326 914 0 0 0 0 SRX4391054 Unrestricted 0.0 single_particle_sort 3300021828 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.D4 DOE Joint Genome Institute (JGI) 3300021828 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1412487 1635 1 0 2 0 SRX3989563 Unrestricted 0.0 single_particle_sort 3300016524 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-N20 DOE Joint Genome Institute (JGI) 3300016524 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 540814 556 0 0 0 0 SRX3785640 Unrestricted 0.0 single_particle_sort 3300023474 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.F17 DOE Joint Genome Institute (JGI) 3300023474 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 1321040 1410 0 0 0 0 SRX4548444 Unrestricted 0.0 single_particle_sort 3300026579 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-M03 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026579 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 29929 51 0 0 0 0 0.0 single_particle_sort 3300024381 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.D15 DOE Joint Genome Institute (JGI) 3300024381 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 128593 162 0 0 0 0 SRX4547859 Unrestricted 0.0 single_particle_sort 3300037986 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.C14 DOE Joint Genome Institute (JGI) 3300037986 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 714440 710 0 0 1 0 SRX9411025 Unrestricted 0.0 single_particle_sort 3300050802 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_L23_SVS DOE Joint Genome Institute (JGI) 3300050802 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 122676 126 0 0 0 0 Restricted 0.0 single_particle_sort 3300036038 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_K21 DOE Joint Genome Institute (JGI) 3300036038 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 215079 245 0 0 0 0 SRX10076836 Unrestricted 0.0 single_particle_sort 3300035940 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.F19 DOE Joint Genome Institute (JGI) 3300035940 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1857084 1900 0 0 0 0 SRX8862574 Unrestricted 0.0 single_particle_sort 3300048736 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_C16_SVS DOE Joint Genome Institute (JGI) 3300048736 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 36338 51 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300041613 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.2.G13 DOE Joint Genome Institute (JGI) 3300041613 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 462014 563 0 0 0 0 SRX14833257 Unrestricted 0.0 single_particle_sort 3300019422 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16029 DOE Joint Genome Institute (JGI) 3300019422 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 2086695 2284 1 0 1 0 SRX3986858 Unrestricted 0.0 single_particle_sort 3300034567 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.C11 DOE Joint Genome Institute (JGI) 3300034567 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1478893 1579 0 0 1 0 SRX8393462 Unrestricted 0.0 single_particle_sort 3300019909 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-N6 DOE Joint Genome Institute (JGI) 3300019909 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 409827 517 0 0 1 0 SRX4663576 Unrestricted 0.0 single_particle_sort 3300018292 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_D10 DOE Joint Genome Institute (JGI) 3300018292 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1154344 1154 1 0 1 0 SRX4649700 Unrestricted 0.0 single_particle_sort 3300018218 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_H15 DOE Joint Genome Institute (JGI) 3300018218 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 552067 597 0 0 0 0 SRX4652807 Unrestricted 0.0 single_particle_sort 3300010820 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_6_SCGC_AG-138-E04 DOE Joint Genome Institute (JGI) 3300010820 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 487258 620 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300019513 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from Echinus Geyser water, Yellowstone National Park, Wyoming, United States - Thaumarchaeota archaeon JGI 000156CP-J13 DOE Joint Genome Institute (JGI) 3300019513 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Acidic hot water 44.7225 -110.7014 969186 1168 0 0 2 0 Unrestricted 0.0 single_particle_sort 3300041366 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.C9 DOE Joint Genome Institute (JGI) 3300041366 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1287870 1360 0 0 0 0 SRX9648286 Unrestricted 0.0 single_particle_sort 3300035850 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.F7 DOE Joint Genome Institute (JGI) 3300035850 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 750965 880 1 0 1 0 SRX8896948 Unrestricted 0.0 single_particle_sort 3300026602 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-C08 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026602 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 93715 125 0 0 0 0 0.0 single_particle_sort 3300034535 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P9_D15 DOE Joint Genome Institute (JGI) 3300034535 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 18634 17 0 0 0 0 SRX8136699 Unrestricted 0.0 single_particle_sort 3300051114 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_K9_SVS DOE Joint Genome Institute (JGI) 3300051114 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 71391 73 0 0 0 0 Restricted 0.0 single_particle_sort 3300023374 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.M18 DOE Joint Genome Institute (JGI) 3300023374 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 131599 119 0 0 0 0 SRX4548996 Unrestricted 0.0 single_particle_sort 3300041635 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.L11 DOE Joint Genome Institute (JGI) 3300041635 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1002664 950 0 0 0 0 SRX14835782 Unrestricted 0.0 single_particle_sort 3300015990 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-K13 DOE Joint Genome Institute (JGI) 3300015990 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 374956 461 1 0 1 0 SRX3560800 Unrestricted 0.0 single_particle_sort 3300024653 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-N16 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024653 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 73396 89 0 0 0 0 0.0 single_particle_sort 3300019567 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-I20 DOE Joint Genome Institute (JGI) 3300019567 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 34305 51 0 0 0 0 SRX3551336 Unrestricted 0.0 single_particle_sort 3300023136 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.F12 DOE Joint Genome Institute (JGI) 3300023136 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 174805 180 0 0 0 0 SRX4507149 Unrestricted 0.0 single_particle_sort 3300010768 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_45_SCGC_AG-138-P01 DOE Joint Genome Institute (JGI) 3300010768 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 178268 272 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300037371 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.E5.redo DOE Joint Genome Institute (JGI) 3300037371 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 1079333 1230 0 0 0 0 SRX9402790 Unrestricted 0.0 single_particle_sort 3300051014 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_N13_SVS DOE Joint Genome Institute (JGI) 3300051014 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 132160 199 0 0 0 0 Restricted 0.0 single_particle_sort 3300015739 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-F18 DOE Joint Genome Institute (JGI) 3300015739 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 90073 129 0 0 0 0 SRX3562466 Unrestricted 0.0 single_particle_sort 3300038242 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.K20 DOE Joint Genome Institute (JGI) 3300038242 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 81808 96 0 0 0 0 SRX9411076 Unrestricted 0.0 single_particle_sort 3300024787 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-P14 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024787 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 166972 224 0 0 0 0 0.0 single_particle_sort 3300021727 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.M14 DOE Joint Genome Institute (JGI) 3300021727 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 371776 529 1 0 0 0 SRX4006464 Unrestricted 0.0 single_particle_sort 3300019535 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-K12 DOE Joint Genome Institute (JGI) 3300019535 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 30580 28 2 0 0 0 SRX3562471 Unrestricted 0.0 single_particle_sort 3300050945 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-956-I20 DOE Joint Genome Institute (JGI) 3300050945 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1197303 -42.124435 3354656 2649 1 0 1 0 Restricted 0.0 single_particle_sort 3300010813 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.M10 DOE Joint Genome Institute (JGI) 3300010813 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 429050 528 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023508 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.F10 DOE Joint Genome Institute (JGI) 3300023508 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 202566 219 0 0 0 0 SRX4499810 Unrestricted 0.0 single_particle_sort 3300023003 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - EM3 bacterium JGI MDM2 DC4-3-L20 DOE Joint Genome Institute (JGI) 3300023003 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 1134981 1348 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300019520 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from Echinus Geyser water, Yellowstone National Park, Wyoming, United States - NAG2 archaeon MK4 SK304 JGI 000156CP-M15 DOE Joint Genome Institute (JGI) 3300019520 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Acidic hot water 44.7225 -110.7014 1283854 1451 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300021760 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.N8 DOE Joint Genome Institute (JGI) 3300021760 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 583100 726 0 0 0 0 SRX4004989 Unrestricted 0.0 single_particle_sort 3300071247 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_F03_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071247 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 1994277 2339 1 0 1 2 Unrestricted 0.0 single_particle_sort 3300041620 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.N7 DOE Joint Genome Institute (JGI) 3300041620 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2551991 2445 0 0 0 0 SRX14834566 Unrestricted 0.0 single_particle_sort 3300032569 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.G10 DOE Joint Genome Institute (JGI) 3300032569 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 315280 341 1 0 1 0 SRX6452330 Unrestricted 0.0 single_particle_sort 3300050855 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_L8_SVS DOE Joint Genome Institute (JGI) 3300050855 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 67060 93 0 0 0 0 Restricted 0.0 single_particle_sort 3300024362 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.N6 DOE Joint Genome Institute (JGI) 3300024362 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 30507 36 0 0 0 0 SRX4547840 Unrestricted 0.0 single_particle_sort 3300033836 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.M20 DOE Joint Genome Institute (JGI) 3300033836 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 340777 368 0 0 0 0 SRX7630452 Unrestricted 0.0 single_particle_sort 3300024618 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-P01 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024618 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 42582 56 0 0 0 0 0.0 single_particle_sort 3300033242 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Ontario, Canada - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.N6 DOE Joint Genome Institute (JGI) 3300033242 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 648018 733 1 0 1 0 SRX7630685 Unrestricted 0.0 single_particle_sort 3300024692 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-N17 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024692 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 93659 116 0 0 0 0 0.0 single_particle_sort 3300015041 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.I13 DOE Joint Genome Institute (JGI) 3300015041 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 443678 545 0 0 1 0 Restricted 0.0 single_particle_sort 3300036055 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_E22 DOE Joint Genome Institute (JGI) 3300036055 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 39009 50 0 0 0 0 SRX10045891 Unrestricted 0.0 single_particle_sort 3300023325 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.K18 DOE Joint Genome Institute (JGI) 3300023325 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 477248 520 1 0 1 0 SRX4548816 Unrestricted 0.0 single_particle_sort 3300050765 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_N16_SVS DOE Joint Genome Institute (JGI) 3300050765 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 81609 114 0 0 0 0 Restricted 0.0 single_particle_sort 3300024818 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-G02 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024818 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 243318 302 0 0 0 0 0.0 single_particle_sort 3300022944 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.C17 DOE Joint Genome Institute (JGI) 3300022944 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 38269 60 0 0 0 0 SRX4454665 Unrestricted 0.0 single_particle_sort 3300018329 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_D12 DOE Joint Genome Institute (JGI) 3300018329 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1358931 1359 1 0 1 0 SRX4649716 Unrestricted 0.0 single_particle_sort 3300015141 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Mircogenometes bacterium SCGC_AG-274-J23 DOE Joint Genome Institute (JGI) 3300015141 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 585027 678 0 0 1 0 SRX3578331 Unrestricted 0.0 single_particle_sort 3300034558 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.J22 DOE Joint Genome Institute (JGI) 3300034558 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 708113 771 0 0 0 0 SRX8393459 Unrestricted 0.0 single_particle_sort 3300037916 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.C18 DOE Joint Genome Institute (JGI) 3300037916 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 340396 338 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300034710 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.3.L15 DOE Joint Genome Institute (JGI) 3300034710 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 1067472 1173 0 0 0 0 SRX8390473 Unrestricted 0.0 single_particle_sort 3300021650 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.D11 DOE Joint Genome Institute (JGI) 3300021650 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 90756 125 0 0 0 0 SRX4005522 Unrestricted 0.0 single_particle_sort 3300024763 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-G14 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024763 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 148492 186 0 0 0 0 0.0 single_particle_sort 3300033437 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.H7 DOE Joint Genome Institute (JGI) 3300033437 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 1179797 1196 1 0 1 0 SRX7630287 Unrestricted 0.0 single_particle_sort 3300023849 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.K19 DOE Joint Genome Institute (JGI) 3300023849 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 660511 691 1 0 1 0 SRX4519346 Unrestricted 0.0 single_particle_sort 3300035828 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0815.Sybr.01.C5 DOE Joint Genome Institute (JGI) 3300035828 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 333870 400 0 0 0 0 SRX8894365 Unrestricted 0.0 single_particle_sort 3300023532 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.N21 DOE Joint Genome Institute (JGI) 3300023532 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 1424883 1432 1 0 1 0 SRX4548456 Unrestricted 0.0 single_particle_sort 3300051069 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_N21_SVS DOE Joint Genome Institute (JGI) 3300051069 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 145892 181 0 0 0 0 Restricted 0.0 single_particle_sort 3300022290 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Acetothermia_bacterium_SCGC_AH-151-B21 Bigelow Laboratory for Ocean Sciences 3300022290 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 1017620 1071 1 0 1 0 0.0 single_particle_sort 3300023959 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.E21 DOE Joint Genome Institute (JGI) 3300023959 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1295494 1399 0 0 0 0 SRX4523157 Unrestricted 0.0 single_particle_sort 3300033465 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.J10 DOE Joint Genome Institute (JGI) 3300033465 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 1139093 1245 0 0 0 0 SRX7630336 Unrestricted 0.0 single_particle_sort 3300018288 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - AC1_bacterium_SCGC_AG-650-B19 DOE Joint Genome Institute (JGI) 3300018288 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1069670 1047 1 0 0 0 SRX3976994 Unrestricted 0.0 single_particle_sort 3300023649 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.L11 DOE Joint Genome Institute (JGI) 3300023649 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 297376 338 0 0 0 0 SRX4547992 Unrestricted 0.0 single_particle_sort 3300019583 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-J18 DOE Joint Genome Institute (JGI) 3300019583 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 37590 63 0 0 0 0 SRX3561052 Unrestricted 0.0 single_particle_sort 3300038049 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.G6 DOE Joint Genome Institute (JGI) 3300038049 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 822267 1062 0 0 0 0 SRX9411292 Unrestricted 0.0 single_particle_sort 3300010791 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_30_SCGC_AG-138-K14 DOE Joint Genome Institute (JGI) 3300010791 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 343644 411 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300037952 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.G22 DOE Joint Genome Institute (JGI) 3300037952 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 1018962 1206 1 0 1 0 SRX9410998 Unrestricted 0.0 single_particle_sort 3300023330 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.H7 DOE Joint Genome Institute (JGI) 3300023330 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 559943 619 1 0 1 0 SRX4548820 Unrestricted 0.0 single_particle_sort 3300034596 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.D7 DOE Joint Genome Institute (JGI) 3300034596 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 927894 991 1 0 1 0 SRX8394688 Unrestricted 0.0 single_particle_sort 3300018199 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_F6 DOE Joint Genome Institute (JGI) 3300018199 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 396666 500 0 0 0 0 SRX4652729 Unrestricted 0.0 single_particle_sort 3300071308 *Microbiome Permanent Draft Comparing whole genome amplification chemistries for bacterial single cell genomics Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - scBac_Watchmaker_EnviBac_sc_well7E_S86 Stanford University 3300071308 Metagenome - Single Particle Sort Spades v. 3.15.3 released per request -- IMGSUPP-4358 No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 505065 516 1 0 2 0 0.0 single_particle_sort 3300024411 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Pseudomonas bacterium JGI PFNR15_M11 DOE Joint Genome Institute (JGI) 3300024411 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 210908 245 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300034723 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P3_P8 DOE Joint Genome Institute (JGI) 3300034723 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 3865 3 0 0 0 0 SRX8136480 Unrestricted 0.0 single_particle_sort 3300035760 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.I20 DOE Joint Genome Institute (JGI) 3300035760 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 655168 784 0 0 0 0 SRX8901092 Unrestricted 0.0 single_particle_sort 3300037905 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.F5 DOE Joint Genome Institute (JGI) 3300037905 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 687666 895 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300050838 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_H6_SVS DOE Joint Genome Institute (JGI) 3300050838 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 107372 146 0 0 0 0 Restricted 0.0 single_particle_sort 3300018099 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_B11 DOE Joint Genome Institute (JGI) 3300018099 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 168303 223 1 0 1 0 SRX4647587 Unrestricted 0.0 single_particle_sort 3300036725 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.F6.redo DOE Joint Genome Institute (JGI) 3300036725 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 580538 666 0 0 0 0 SRX8905222 Unrestricted 0.0 single_particle_sort 3300016575 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, USA - Atribacteria_bacterium_SCGC_AG-640-D23 DOE Joint Genome Institute (JGI) 3300016575 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Acidic Artesian spring Sediment Hot spring sediment 34.9956 -98.6889 7.5 1824138 1757 1 0 1 0 SRX3784231 Unrestricted 0.0 single_particle_sort 3300024717 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-K11 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024717 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 96268 140 0 0 0 0 0.0 single_particle_sort 3300023425 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.C16 DOE Joint Genome Institute (JGI) 3300023425 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 2199041 2028 1 0 0 0 SRX4519618 Unrestricted 0.0 single_particle_sort 3300041160 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.H11 DOE Joint Genome Institute (JGI) 3300041160 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1142176 1288 1 0 2 0 SRX9677223 Unrestricted 0.0 single_particle_sort 3300019596 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.N04 DOE Joint Genome Institute (JGI) 3300019596 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 51824 72 0 0 0 0 SRX3899678 Unrestricted 0.0 single_particle_sort 3300010757 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_18_SCGC_AG-138-I09 DOE Joint Genome Institute (JGI) 3300010757 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 227721 217 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035727 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_K6 DOE Joint Genome Institute (JGI) 3300035727 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 124546 167 0 0 0 0 SRX10045215 Unrestricted 0.0 single_particle_sort 3300035904 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.H17 DOE Joint Genome Institute (JGI) 3300035904 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 669874 809 0 0 0 0 SRX8941578 Unrestricted 0.0 single_particle_sort 3300036002 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.C13 DOE Joint Genome Institute (JGI) 3300036002 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 547817 583 1 0 1 0 SRX8856765 Unrestricted 0.0 single_particle_sort 3300033365 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.D6 DOE Joint Genome Institute (JGI) 3300033365 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 370184 405 1 0 1 0 SRX7627192 Unrestricted 0.0 single_particle_sort 3300015577 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-H22 DOE Joint Genome Institute (JGI) 3300015577 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 679266 810 0 0 0 0 SRX3549986 Unrestricted 0.0 single_particle_sort 3300036730 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.I8.redo DOE Joint Genome Institute (JGI) 3300036730 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 342355 399 0 0 0 0 SRX8905542 Unrestricted 0.0 single_particle_sort 3300015926 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Microgenometes_bacterium_SCGC_AG-516-M20 DOE Joint Genome Institute (JGI) 3300015926 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Groundwater -28.24 26.8 8.55 358249 382 1 0 1 0 SRX3784073 Unrestricted 0.0 single_particle_sort 3300041127 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.G8 DOE Joint Genome Institute (JGI) 3300041127 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1475242 1359 0 0 0 0 SRX9668767 Unrestricted 0.0 single_particle_sort 3300041351 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.C6 DOE Joint Genome Institute (JGI) 3300041351 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 989827 985 0 0 0 0 SRX9647032 Unrestricted 0.0 single_particle_sort 3300019558 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-M09 DOE Joint Genome Institute (JGI) 3300019558 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 34977 46 0 0 0 0 SRX3560357 Unrestricted 0.0 single_particle_sort 3300033337 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.J10 DOE Joint Genome Institute (JGI) 3300033337 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 289250 372 0 0 0 0 SRX7630588 Unrestricted 0.0 single_particle_sort 3300018253 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Chlorobiales_bacterium_SCGC_AG-650-D14 DOE Joint Genome Institute (JGI) 3300018253 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 944284 850 0 0 0 0 SRX3979396 Unrestricted 0.0 single_particle_sort 3300036102 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_L19 DOE Joint Genome Institute (JGI) 3300036102 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 24197 33 1 0 1 0 SRX10046588 Unrestricted 0.0 single_particle_sort 3300023528 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.E12 DOE Joint Genome Institute (JGI) 3300023528 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 787904 793 0 0 0 0 SRX4548393 Unrestricted 0.0 single_particle_sort 3300071219 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_Wchmk_D09_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071219 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 612031 725 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300019500 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Thioalkalivibrio sp. HL7711_P3F6 JGI 000151CP-G10 DOE Joint Genome Institute (JGI) 3300019500 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 522592 601 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033680 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P9_L18 DOE Joint Genome Institute (JGI) 3300033680 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 6180 9 0 0 0 0 SRX7531293 Unrestricted 0.0 single_particle_sort 3300035832 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0815.Sybr.01.F6 DOE Joint Genome Institute (JGI) 3300035832 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 584968 686 1 0 2 0 SRX8894438 Unrestricted 0.0 single_particle_sort 3300050970 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_A4_SVS DOE Joint Genome Institute (JGI) 3300050970 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 47627 61 0 0 0 0 Restricted 0.0 single_particle_sort 3300033880 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.L21 DOE Joint Genome Institute (JGI) 3300033880 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 361005 419 0 0 0 0 SRX7626824 Unrestricted 0.0 single_particle_sort 3300041600 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.I16 DOE Joint Genome Institute (JGI) 3300041600 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 727787 720 0 0 0 0 SRX14829707 Unrestricted 0.0 single_particle_sort 3300023123 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.H20 DOE Joint Genome Institute (JGI) 3300023123 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 69440 109 0 0 0 0 SRX4508531 Unrestricted 0.0 single_particle_sort 3300035273 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_J9 DOE Joint Genome Institute (JGI) 3300035273 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 102357 112 0 0 0 0 SRX9538044 Unrestricted 0.0 single_particle_sort 3300022967 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.C11 DOE Joint Genome Institute (JGI) 3300022967 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 188285 248 0 0 0 0 SRX4418808 Unrestricted 0.0 single_particle_sort 3300023788 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.F19 DOE Joint Genome Institute (JGI) 3300023788 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 339108 361 0 0 0 0 SRX4389938 Unrestricted 0.0 single_particle_sort 3300019455 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent microbial mat, Guaymas Basin, Mexico - 4E_4869_18_06 DOE Joint Genome Institute (JGI) 3300019455 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.001 -110.5998 21739957 20055 5 0 5 0 SRX3973876 Unrestricted 0.0 single_particle_sort 3300041379 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.F9 DOE Joint Genome Institute (JGI) 3300041379 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1554222 1309 1 0 1 0 SRX9645048 Unrestricted 0.0 single_particle_sort 3300021707 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.F16 DOE Joint Genome Institute (JGI) 3300021707 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 304254 414 0 0 0 0 SRX4009968 Unrestricted 0.0 single_particle_sort 3300023393 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Deep Lake surface water, Antarctica - Uncultured microbe JGI DeepLkS.SYBR.02.I11 DOE Joint Genome Institute (JGI) 3300023393 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5558 78.1913 79095 106 1 0 1 0 SRX4547881 Unrestricted 0.0 single_particle_sort 3300034455 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.F17 DOE Joint Genome Institute (JGI) 3300034455 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 511780 541 0 0 0 0 SRX8389315 Unrestricted 0.0 single_particle_sort 3300038087 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .E20 DOE Joint Genome Institute (JGI) 3300038087 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 751838 952 1 0 1 0 SRX9411543 Unrestricted 0.0 single_particle_sort 3300035975 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.I18 DOE Joint Genome Institute (JGI) 3300035975 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 838273 882 0 0 0 0 SRX8854050 Unrestricted 0.0 single_particle_sort 3300019402 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16001 DOE Joint Genome Institute (JGI) 3300019402 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 1643250 1861 1 0 1 0 SRX3985600 Unrestricted 0.0 single_particle_sort 3300018177 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-G20 DOE Joint Genome Institute (JGI) 3300018177 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 323643 294 0 0 0 0 SRX3978577 Unrestricted 0.0 single_particle_sort 3300023010 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - Chlorobi bacterium JGI GBS_4_G19 DOE Joint Genome Institute (JGI) 3300023010 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 5740590 5264 2 0 2 0 Unrestricted 0.0 single_particle_sort 3300010800 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_15_SCGC_AG-159-E07 DOE Joint Genome Institute (JGI) 3300010800 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 380298 456 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300023753 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.N21 DOE Joint Genome Institute (JGI) 3300023753 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 143607 170 0 0 1 0 SRX4548070 Unrestricted 0.0 single_particle_sort 3300023887 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.D11 DOE Joint Genome Institute (JGI) 3300023887 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 812441 834 0 0 0 0 SRX4523746 Unrestricted 0.0 single_particle_sort 3300015985 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Microgenometes bacterium SCGC_AG-274-C20 DOE Joint Genome Institute (JGI) 3300015985 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 371492 453 1 0 0 0 SRX3578242 Unrestricted 0.0 single_particle_sort 3300038187 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.I5 DOE Joint Genome Institute (JGI) 3300038187 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 1001478 1338 0 0 0 0 SRX9411807 Unrestricted 0.0 single_particle_sort 3300016378 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-M14 DOE Joint Genome Institute (JGI) 3300016378 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 947301 889 0 0 0 0 SRX3578227 Unrestricted 0.0 single_particle_sort 3300021608 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.C4 DOE Joint Genome Institute (JGI) 3300021608 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 20711 21 0 0 0 0 SRX4009919 Unrestricted 0.0 single_particle_sort 3300048723 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 159_D17_SVS DOE Joint Genome Institute (JGI) 3300048723 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 18480 30 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023971 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.D21 DOE Joint Genome Institute (JGI) 3300023971 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 1605408 1699 1 0 1 0 SRX4523610 Unrestricted 0.0 single_particle_sort 3300049955 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_I7_SVS DOE Joint Genome Institute (JGI) 3300049955 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 47226 86 0 0 0 0 Restricted 0.0 single_particle_sort 3300019795 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-L10 DOE Joint Genome Institute (JGI) 3300019795 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 152332 180 0 0 0 0 SRX4663348 Unrestricted 0.0 single_particle_sort 3300024131 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Pseudomonas bacterium JGI PFNR15_I22 DOE Joint Genome Institute (JGI) 3300024131 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 460783 474 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300016504 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-M13 DOE Joint Genome Institute (JGI) 3300016504 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 340093 352 0 0 1 0 SRX3784753 Unrestricted 0.0 single_particle_sort 3300021808 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.I15 DOE Joint Genome Institute (JGI) 3300021808 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 744800 880 1 0 1 0 SRX3989497 Unrestricted 0.0 single_particle_sort 3300071182 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_edMDA_B06_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071182 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 476960 495 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300037974 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.L9 DOE Joint Genome Institute (JGI) 3300037974 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 40668 59 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300032543 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.F20 DOE Joint Genome Institute (JGI) 3300032543 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 422354 460 1 0 1 0 SRX6430397 Unrestricted 0.0 single_particle_sort 3300050822 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_C15_SVS DOE Joint Genome Institute (JGI) 3300050822 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 67547 101 0 0 0 0 Restricted 0.0 single_particle_sort 3300022045 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Atribacteria bacterium JGI MDM2 LBsed72-1-I13 DOE Joint Genome Institute (JGI) 3300022045 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment freshwater sediment 53.7598 107.9791 876601 989 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300015470 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-K16 DOE Joint Genome Institute (JGI) 3300015470 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 171646 215 1 0 1 0 SRX3560339 Unrestricted 0.0 single_particle_sort 3300014339 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.G19 DOE Joint Genome Institute (JGI) 3300014339 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1288892 1541 0 0 1 0 SRX3298991 Unrestricted 0.0 single_particle_sort 3300018266 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-C20 DOE Joint Genome Institute (JGI) 3300018266 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 935337 933 0 0 0 0 SRX3974493 Unrestricted 0.0 single_particle_sort 3300019690 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG-582-D02 DOE Joint Genome Institute (JGI) 3300019690 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 671489 746 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300041392 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.E6 DOE Joint Genome Institute (JGI) 3300041392 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1401023 1490 0 0 0 0 SRX9646193 Unrestricted 0.0 single_particle_sort 3300019511 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Roseibacterium sp. HL7711_P4H5 JGI 000147CP-J17 DOE Joint Genome Institute (JGI) 3300019511 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 825714 908 2 0 1 0 Unrestricted 0.0 single_particle_sort 3300041318 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.F7 DOE Joint Genome Institute (JGI) 3300041318 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1419877 1437 0 0 1 0 SRX9646836 Unrestricted 0.0 single_particle_sort 3300024126 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Pseudomonas bacterium JGI PFNR15_F17 DOE Joint Genome Institute (JGI) 3300024126 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 150472 173 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300037957 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.E12 DOE Joint Genome Institute (JGI) 3300037957 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 804181 1050 0 0 0 0 SRX9410993 Unrestricted 0.0 single_particle_sort 3300041611 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.2.C8 DOE Joint Genome Institute (JGI) 3300041611 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 180664 200 0 0 0 0 SRX14832781 Unrestricted 0.0 single_particle_sort 3300035480 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_I17 DOE Joint Genome Institute (JGI) 3300035480 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 20104 30 0 0 0 0 SRX9540273 Unrestricted 0.0 single_particle_sort 3300041590 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.N6 DOE Joint Genome Institute (JGI) 3300041590 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 950141 1088 1 0 2 0 SRX10044853 Unrestricted 0.0 single_particle_sort 3300016419 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Parcubacteria bacterium SCGC_AG-278-K08 DOE Joint Genome Institute (JGI) 3300016419 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 1048095 1103 1 0 0 0 SRX3578387 Unrestricted 0.0 single_particle_sort 3300018154 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_H21 DOE Joint Genome Institute (JGI) 3300018154 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 589790 617 1 0 1 0 SRX4648065 Unrestricted 0.0 single_particle_sort 3300071278 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_WGAX_A10_scBac_plate.C DOE Joint Genome Institute (JGI) 3300071278 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 733543 667 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300033247 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.H16 DOE Joint Genome Institute (JGI) 3300033247 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 522966 591 0 0 0 0 SRX7630613 Unrestricted 0.0 single_particle_sort 3300024697 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-I03 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024697 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 106953 123 0 0 0 0 0.0 single_particle_sort 3300024383 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Pseudomonas bacterium JGI PFNR15_L18 DOE Joint Genome Institute (JGI) 3300024383 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 154222 191 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300036007 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.M11 DOE Joint Genome Institute (JGI) 3300036007 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 764571 818 0 0 0 0 SRX8857662 Unrestricted 0.0 single_particle_sort 3300016250 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG_AG-578-J04 DOE Joint Genome Institute (JGI) 3300016250 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 538894 593 1 0 0 0 SRX3579217 Unrestricted 0.0 single_particle_sort 3300015572 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown archaeum SCGC_AG-122-L04 DOE Joint Genome Institute (JGI) 3300015572 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 686558 779 0 0 0 0 SRX3573094 Unrestricted 0.0 single_particle_sort 3300024396 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Pseudomonas bacterium JGI PFNR15_E4 DOE Joint Genome Institute (JGI) 3300024396 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 309712 349 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300010752 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_34_SCGC_AG-159-L05 DOE Joint Genome Institute (JGI) 3300010752 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 154339 201 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035722 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_C16 DOE Joint Genome Institute (JGI) 3300035722 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 47794 61 0 0 0 0 SRX10045721 Unrestricted 0.0 single_particle_sort 3300044082 *Microbiome Permanent Draft High-throughput characterization of viral-host interactions Sorted cell/s from lab media in Berkeley, California, United States - SPS_viraltag_JGI_H497-M06 DOE Joint Genome Institute (JGI) 3300044082 Metagenome - Single Particle Sort spades v. 3.15.0 released based on JGI ITS No Yes sroux@lbl.gov Simon Roux No Engineered Lab enrichment Unclassified Defined media Unclassified Defined media 37.8777 -122.251 72048 74 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033332 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.C8 DOE Joint Genome Institute (JGI) 3300033332 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 430254 505 0 0 0 0 SRX7627201 Unrestricted 0.0 single_particle_sort 3300024756 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-E05 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024756 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 148891 176 0 0 0 0 0.0 single_particle_sort 3300014439 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.B16 DOE Joint Genome Institute (JGI) 3300014439 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 984007 1070 0 0 1 0 SRX3368446 Unrestricted 0.0 single_particle_sort 3300023994 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.G7 DOE Joint Genome Institute (JGI) 3300023994 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 2043667 2159 1 0 0 0 SRX4519563 Unrestricted 0.0 single_particle_sort 3300041122 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.L12 DOE Joint Genome Institute (JGI) 3300041122 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2997054 3101 0 0 0 0 SRX9668547 Unrestricted 0.0 single_particle_sort 3300023001 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - Fervidibacteria bacterium JGI MDM2 DC4-2-M13 DOE Joint Genome Institute (JGI) 3300023001 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 1064453 1252 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300010811 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_27_SCGC_AG-159-J11 DOE Joint Genome Institute (JGI) 3300010811 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 370826 513 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033785 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P3_H1 DOE Joint Genome Institute (JGI) 3300033785 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 36708 75 0 0 0 0 SRX7531076 Unrestricted 0.0 single_particle_sort 3300010716 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_23_SCGC_AG-138-J05 DOE Joint Genome Institute (JGI) 3300010716 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 39177 42 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300037373 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.E13.redo DOE Joint Genome Institute (JGI) 3300037373 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 376466 448 1 0 1 0 SRX9402806 Unrestricted 0.0 single_particle_sort 3300024712 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-D17 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024712 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 114927 136 0 0 0 0 0.0 single_particle_sort 3300024798 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-B18 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024798 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 219613 245 0 0 0 0 0.0 single_particle_sort 3300024651 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-L09 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024651 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 67935 86 0 0 0 0 0.0 single_particle_sort 3300015809 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-188-M17 DOE Joint Genome Institute (JGI) 3300015809 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 261410 285 1 0 1 0 SRX3578231 Unrestricted 0.0 single_particle_sort 3300015554 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-J09 DOE Joint Genome Institute (JGI) 3300015554 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 563013 664 0 0 1 0 SRX3560335 Unrestricted 0.0 single_particle_sort 3300038219 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.I20 DOE Joint Genome Institute (JGI) 3300038219 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 705949 797 2 0 2 0 SRX9411049 Unrestricted 0.0 single_particle_sort 3300023661 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.F10 DOE Joint Genome Institute (JGI) 3300023661 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 1926468 1925 1 0 1 0 SRX4415436 Unrestricted 0.0 single_particle_sort 3300051141 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_B10_SVS DOE Joint Genome Institute (JGI) 3300051141 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 63663 89 0 0 0 0 Restricted 0.0 single_particle_sort 3300036635 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.G19 DOE Joint Genome Institute (JGI) 3300036635 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 899412 1010 0 0 1 0 SRX8903142 Unrestricted 0.0 single_particle_sort 3300038061 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.G21 DOE Joint Genome Institute (JGI) 3300038061 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 173498 233 0 0 0 0 SRX9411395 Unrestricted 0.0 single_particle_sort 3300019815 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-J14 DOE Joint Genome Institute (JGI) 3300019815 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 639888 613 1 0 0 0 SRX4663326 Unrestricted 0.0 single_particle_sort 3300010774 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.04.G3 DOE Joint Genome Institute (JGI) 3300010774 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 258688 294 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300022134 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.H16 DOE Joint Genome Institute (JGI) 3300022134 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 2787143 2828 0 0 1 0 SRX3998131 Unrestricted 0.0 single_particle_sort 3300015931 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacterium bacterium SCGC_AG-582-L03 DOE Joint Genome Institute (JGI) 3300015931 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 341607 387 1 0 0 0 SRX3580024 Unrestricted 0.0 single_particle_sort 3300016039 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-K04 DOE Joint Genome Institute (JGI) 3300016039 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 449403 520 1 0 0 0 SRX3551338 Unrestricted 0.0 single_particle_sort 3300021702 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.C8 DOE Joint Genome Institute (JGI) 3300021702 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 298447 412 0 0 0 0 SRX4009936 Unrestricted 0.0 single_particle_sort 3300034701 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.2.H13 DOE Joint Genome Institute (JGI) 3300034701 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 1954949 2029 1 0 1 0 SRX8390421 Unrestricted 0.0 single_particle_sort 3300023861 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.G18 DOE Joint Genome Institute (JGI) 3300023861 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 693268 724 1 0 1 0 SRX4524233 Unrestricted 0.0 single_particle_sort 3300034633 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.G13 DOE Joint Genome Institute (JGI) 3300034633 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1462090 1546 1 0 1 0 SRX8390601 Unrestricted 0.0 single_particle_sort 3300022034 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Caldiserica bacterium JGI MDM2 LBsed72-1-K5 DOE Joint Genome Institute (JGI) 3300022034 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment freshwater sediment 53.7598 107.9791 776897 892 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300019615 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-N12 DOE Joint Genome Institute (JGI) 3300019615 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 66040 92 0 0 0 0 SRX3560360 Unrestricted 0.0 single_particle_sort 3300024679 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-O13 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024679 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 77071 109 0 0 0 0 0.0 single_particle_sort 3300033264 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.J13 DOE Joint Genome Institute (JGI) 3300033264 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 1057664 1033 1 0 1 0 SRX7630606 Unrestricted 0.0 single_particle_sort 3300023766 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.C19 DOE Joint Genome Institute (JGI) 3300023766 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 191849 233 0 0 0 0 SRX4549222 Unrestricted 0.0 single_particle_sort 3300024085 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.H20 DOE Joint Genome Institute (JGI) 3300024085 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 797663 861 1 0 0 0 SRX4519566 Unrestricted 0.0 single_particle_sort 3300033198 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.M15 DOE Joint Genome Institute (JGI) 3300033198 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 409214 459 1 0 1 0 SRX7629315 Unrestricted 0.0 single_particle_sort 3300035837 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0815.Sybr.01.K12 DOE Joint Genome Institute (JGI) 3300035837 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 385997 432 1 0 1 0 SRX8894640 Unrestricted 0.0 single_particle_sort 3300024879 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.H22 DOE Joint Genome Institute (JGI) 3300024879 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 196773 268 0 0 0 0 SRX4390944 Unrestricted 0.0 single_particle_sort 3300036620 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.F12 DOE Joint Genome Institute (JGI) 3300036620 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 462411 548 0 0 0 0 SRX8902819 Unrestricted 0.0 single_particle_sort 3300022962 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - EM3 bacterium JGI MDM2 DC4-3-L4 DOE Joint Genome Institute (JGI) 3300022962 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 318366 388 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300026588 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-C22 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026588 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 42617 57 0 0 0 0 0.0 single_particle_sort 3300034606 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.H20 DOE Joint Genome Institute (JGI) 3300034606 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 836033 850 0 0 0 0 SRX8394725 Unrestricted 0.0 single_particle_sort 3300033593 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_G18 DOE Joint Genome Institute (JGI) 3300033593 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 20245 24 0 0 0 0 SRX7525362 Unrestricted 0.0 single_particle_sort 3300016208 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-574-M04 DOE Joint Genome Institute (JGI) 3300016208 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 278067 347 1 0 0 0 SRX3579780 Unrestricted 0.0 single_particle_sort 3300032670 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.H6 DOE Joint Genome Institute (JGI) 3300032670 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 1627233 1400 1 0 1 0 SRX6451712 Unrestricted 0.0 single_particle_sort 3300035865 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.J19 DOE Joint Genome Institute (JGI) 3300035865 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 478951 496 1 0 0 0 SRX8856768 Unrestricted 0.0 single_particle_sort 3300019806 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-K11 DOE Joint Genome Institute (JGI) 3300019806 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 267394 352 1 0 0 0 SRX4663334 Unrestricted 0.0 single_particle_sort 3300024400 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.J16 DOE Joint Genome Institute (JGI) 3300024400 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 656018 751 1 0 0 0 SRX4547853 Unrestricted 0.0 single_particle_sort 3300041209 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.L10 DOE Joint Genome Institute (JGI) 3300041209 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2261820 2468 1 0 1 0 SRX9659366 Unrestricted 0.0 single_particle_sort 3300023468 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.C15 DOE Joint Genome Institute (JGI) 3300023468 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 977415 1110 0 0 0 0 SRX4548532 Unrestricted 0.0 single_particle_sort 3300033586 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P9_K17 DOE Joint Genome Institute (JGI) 3300033586 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 67263 86 0 0 0 0 SRX7531264 Unrestricted 0.0 single_particle_sort 3300019606 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-J13 DOE Joint Genome Institute (JGI) 3300019606 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 59602 83 0 0 0 0 SRX3560980 Unrestricted 0.0 single_particle_sort 3300050827 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_E20_SVS DOE Joint Genome Institute (JGI) 3300050827 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 74119 108 0 0 0 0 Restricted 0.0 single_particle_sort 3300022981 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.I22 DOE Joint Genome Institute (JGI) 3300022981 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 499034 545 0 0 0 0 SRX4454499 Unrestricted 0.0 single_particle_sort 3300071187 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_edMDA_H06_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071187 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 1014547 1165 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300038082 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .G4 DOE Joint Genome Institute (JGI) 3300038082 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 677528 1001 0 0 0 0 SRX9411533 Unrestricted 0.0 single_particle_sort 3300036613 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.L10 DOE Joint Genome Institute (JGI) 3300036613 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 2227579 2516 1 0 1 0 SRX8902644 Unrestricted 0.0 single_particle_sort 3300019407 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16031 DOE Joint Genome Institute (JGI) 3300019407 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 1630072 1866 1 0 1 0 SRX3986860 Unrestricted 0.0 single_particle_sort 3300035738 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.C9 DOE Joint Genome Institute (JGI) 3300035738 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1329476 1381 1 0 1 0 SRX8857427 Unrestricted 0.0 single_particle_sort 3300018172 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_J19 DOE Joint Genome Institute (JGI) 3300018172 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 846517 935 0 0 0 0 SRX4647593 Unrestricted 0.0 single_particle_sort 3300019633 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-F22 DOE Joint Genome Institute (JGI) 3300019633 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 97636 111 0 0 0 0 SRX4814316 Unrestricted 0.0 single_particle_sort 3300041138 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.J11 DOE Joint Genome Institute (JGI) 3300041138 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 932837 1057 0 0 0 0 SRX9669577 Unrestricted 0.0 single_particle_sort 3300038182 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.G22 DOE Joint Genome Institute (JGI) 3300038182 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 412653 515 0 0 0 0 SRX9411802 Unrestricted 0.0 single_particle_sort 3300033328 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.H11 DOE Joint Genome Institute (JGI) 3300033328 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 571743 525 0 0 0 0 SRX7630589 Unrestricted 0.0 single_particle_sort 3300021755 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.E12 DOE Joint Genome Institute (JGI) 3300021755 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 930610 940 0 0 0 0 SRX3993599 Unrestricted 0.0 single_particle_sort 3300023882 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.I19 DOE Joint Genome Institute (JGI) 3300023882 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 747408 837 1 0 1 0 SRX4521797 Unrestricted 0.0 single_particle_sort 3300034615 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.F20 DOE Joint Genome Institute (JGI) 3300034615 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 568251 622 0 0 0 0 SRX8394783 Unrestricted 0.0 single_particle_sort 3300050860 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_P17_SVS DOE Joint Genome Institute (JGI) 3300050860 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 70765 111 0 0 0 0 Restricted 0.0 single_particle_sort 3300014465 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.B13 DOE Joint Genome Institute (JGI) 3300014465 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1319197 1581 1 0 1 0 SRX3298785 Unrestricted 0.0 single_particle_sort 3300041354 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.G20 DOE Joint Genome Institute (JGI) 3300041354 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 982578 859 0 0 0 0 SRX9647162 Unrestricted 0.0 single_particle_sort 3300013299 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - Thermomicrobium bacterium JGI GBS_6_D4 DOE Joint Genome Institute (JGI) 3300013299 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Near-boiling (>90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 678766 734 1 0 1 0 SRX3899734 Unrestricted 0.0 single_particle_sort 3300036009 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.I10 DOE Joint Genome Institute (JGI) 3300036009 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1505154 1566 1 0 1 0 SRX8857760 Unrestricted 0.0 single_particle_sort 3300024145 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Sphingobacterium bacterium JGI PFNR15_J10 DOE Joint Genome Institute (JGI) 3300024145 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 2707806 2623 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300035268 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_J8 DOE Joint Genome Institute (JGI) 3300035268 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 118053 176 0 0 0 0 SRX9537976 Unrestricted 0.0 single_particle_sort 3300022126 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.E9 DOE Joint Genome Institute (JGI) 3300022126 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 3303596 3010 0 0 0 0 SRX3998125 Unrestricted 0.0 single_particle_sort 3300014437 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.L06 DOE Joint Genome Institute (JGI) 3300014437 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 890669 1001 0 0 0 0 SRX3366664 Unrestricted 0.0 single_particle_sort 3300035901 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.C16 DOE Joint Genome Institute (JGI) 3300035901 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 143979 190 0 0 0 0 SRX8899621 Unrestricted 0.0 single_particle_sort 3300022026 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Atribacteria bacterium JGI MDM2 LBsed72-3-G8 DOE Joint Genome Institute (JGI) 3300022026 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment freshwater sediment 53.7598 107.9791 883506 935 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300015406 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Parcubacteria bacterium SCGC_AG-128-K09 DOE Joint Genome Institute (JGI) 3300015406 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 822902 898 1 0 1 0 SRX3577028 Unrestricted 0.0 single_particle_sort 3300016605 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_F10 DOE Joint Genome Institute (JGI) 3300016605 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 2362430 2305 1 0 1 0 SRX4066378 Unrestricted 0.0 single_particle_sort 3300016463 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Thaumarchaeota archaeum SCGC_AG-657-P16 DOE Joint Genome Institute (JGI) 3300016463 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 1146521 1460 1 0 2 0 SRX3601917 Unrestricted 0.0 single_particle_sort 3300018118 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-M17 DOE Joint Genome Institute (JGI) 3300018118 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 331151 353 0 0 0 0 SRX3974849 Unrestricted 0.0 single_particle_sort 3300018192 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_M15 DOE Joint Genome Institute (JGI) 3300018192 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 392910 427 1 0 1 0 SRX4652196 Unrestricted 0.0 single_particle_sort 3300023905 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.E18 DOE Joint Genome Institute (JGI) 3300023905 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 805028 946 0 0 0 0 SRX4549809 Unrestricted 0.0 single_particle_sort 3300024414 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.J17 DOE Joint Genome Institute (JGI) 3300024414 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 244932 288 0 0 0 0 SRX4547855 Unrestricted 0.0 single_particle_sort 3300016317 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-G06 DOE Joint Genome Institute (JGI) 3300016317 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 664720 772 0 0 0 0 SRX3563373 Unrestricted 0.0 single_particle_sort 3300015807 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-M18 DOE Joint Genome Institute (JGI) 3300015807 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 244094 279 0 0 0 0 SRX3563933 Unrestricted 0.0 single_particle_sort 3300015433 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-I07 DOE Joint Genome Institute (JGI) 3300015433 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 76669 114 0 0 0 0 SRX3560329 Unrestricted 0.0 single_particle_sort 3300018092 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - uncultured microorganism JGI MDM2 ZSSED05-2-J14 DOE Joint Genome Institute (JGI) 3300018092 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 82569 95 0 0 0 0 SRX3917992 Unrestricted 0.0 single_particle_sort 3300010794 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_25_SCGC_AG-159-I11 DOE Joint Genome Institute (JGI) 3300010794 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 408099 419 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300016363 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown archaeum SCGC_AG-278-L04 DOE Joint Genome Institute (JGI) 3300016363 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 721295 858 1 0 1 0 SRX3578390 Unrestricted 0.0 single_particle_sort 3300038142 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.J14 DOE Joint Genome Institute (JGI) 3300038142 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 961760 1259 0 0 0 0 SRX9411767 Unrestricted 0.0 single_particle_sort 3300023842 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.D21 DOE Joint Genome Institute (JGI) 3300023842 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 578603 644 0 0 0 0 SRX4548994 Unrestricted 0.0 single_particle_sort 3300014337 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.F21 DOE Joint Genome Institute (JGI) 3300014337 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1172617 1391 0 0 1 0 SRX3298950 Unrestricted 0.0 single_particle_sort 3300037959 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.H17 DOE Joint Genome Institute (JGI) 3300037959 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 75442 121 0 0 0 0 SRX9411019 Unrestricted 0.0 single_particle_sort 3300015415 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - unknown archaeum SCGC_AG-128-J06 DOE Joint Genome Institute (JGI) 3300015415 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 863548 1043 1 0 2 0 SRX3577023 Unrestricted 0.0 single_particle_sort 3300016616 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - NC10_bacterium_SCGC_AG-636-J23 DOE Joint Genome Institute (JGI) 3300016616 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 2407123 2537 1 0 1 0 SRX3784415 Unrestricted 0.0 single_particle_sort 3300038042 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.05.E22 DOE Joint Genome Institute (JGI) 3300038042 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 604299 803 0 0 0 0 SRX9411253 Unrestricted 0.0 single_particle_sort 3300023642 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.E15 DOE Joint Genome Institute (JGI) 3300023642 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 134281 171 0 0 0 0 SRX4547903 Unrestricted 0.0 single_particle_sort 3300023952 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.G12 DOE Joint Genome Institute (JGI) 3300023952 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1385963 1319 0 0 0 0 SRX4519551 Unrestricted 0.0 single_particle_sort 3300016417 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_D22 DOE Joint Genome Institute (JGI) 3300016417 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 1166087 1099 1 0 1 0 SRX4065714 Unrestricted 0.0 single_particle_sort 3300024699 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-N06 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024699 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 93324 125 0 0 0 0 0.0 single_particle_sort 3300033249 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.G18 DOE Joint Genome Institute (JGI) 3300033249 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 56122 56 0 0 0 0 SRX7630668 Unrestricted 0.0 single_particle_sort 3300022941 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.F7 DOE Joint Genome Institute (JGI) 3300022941 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 18051 18 0 0 0 0 SRX4454503 Unrestricted 0.0 single_particle_sort 3300015144 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown archaeum SCGC_AG-274-G09 DOE Joint Genome Institute (JGI) 3300015144 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 555806 759 1 0 1 0 SRX3578326 Unrestricted 0.0 single_particle_sort 3300015708 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Aerophobetes bacterium SCGC_AG-657-P18 DOE Joint Genome Institute (JGI) 3300015708 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 147446 160 0 0 0 0 SRX3602056 Unrestricted 0.0 single_particle_sort 3300032511 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.K4 DOE Joint Genome Institute (JGI) 3300032511 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 287609 313 1 0 1 0 SRX6452137 Unrestricted 0.0 single_particle_sort 3300033573 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.C11 DOE Joint Genome Institute (JGI) 3300033573 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 215253 242 0 0 0 0 SRX7626292 Unrestricted 0.0 single_particle_sort 3300032690 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.D13 DOE Joint Genome Institute (JGI) 3300032690 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 561523 555 0 0 0 0 SRX6429422 Unrestricted 0.0 single_particle_sort 3300015044 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.K21 DOE Joint Genome Institute (JGI) 3300015044 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 475157 588 1 0 1 0 Restricted 0.0 single_particle_sort 3300023916 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.L12 DOE Joint Genome Institute (JGI) 3300023916 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 1017901 1031 0 0 1 0 SRX4549589 Unrestricted 0.0 single_particle_sort 3300018322 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_M11 DOE Joint Genome Institute (JGI) 3300018322 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1389787 1350 1 0 1 0 SRX4650351 Unrestricted 0.0 single_particle_sort 3300037971 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.H18 DOE Joint Genome Institute (JGI) 3300037971 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 70753 97 0 0 0 0 SRX9411501 Unrestricted 0.0 single_particle_sort 3300022300 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Acetothermia_bacterium_SCGC_AH-151-A07 Bigelow Laboratory for Ocean Sciences 3300022300 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 1417207 1530 1 0 1 0 0.0 single_particle_sort 3300015750 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-E20 DOE Joint Genome Institute (JGI) 3300015750 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 170181 192 0 0 0 0 SRX3563242 Unrestricted 0.0 single_particle_sort 3300032633 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.E8 DOE Joint Genome Institute (JGI) 3300032633 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 473405 481 0 0 0 0 SRX6431300 Unrestricted 0.0 single_particle_sort 3300015592 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - Parcubacteria bacterium SCGC_AG-122-D09 DOE Joint Genome Institute (JGI) 3300015592 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 1731561 1240 0 0 0 0 SRX3571932 Unrestricted 0.0 single_particle_sort 3300015518 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown archaeum SCGC_AG-122-P06 DOE Joint Genome Institute (JGI) 3300015518 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 320969 414 0 0 0 0 SRX3574140 Unrestricted 0.0 single_particle_sort 3300024376 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.F15 DOE Joint Genome Institute (JGI) 3300024376 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 83274 115 0 0 0 0 SRX4547834 Unrestricted 0.0 single_particle_sort 3300015013 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.N8 DOE Joint Genome Institute (JGI) 3300015013 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 304929 379 1 0 1 0 Restricted 0.0 single_particle_sort 3300041207 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.E5 DOE Joint Genome Institute (JGI) 3300041207 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 588267 630 0 0 1 0 SRX9657283 Unrestricted 0.0 single_particle_sort 3300016501 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-A17 DOE Joint Genome Institute (JGI) 3300016501 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 245327 290 0 0 0 0 SRX3784750 Unrestricted 0.0 single_particle_sort 3300018438 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Chloroflexia_bacterium_SCGC_AG-650-G06 DOE Joint Genome Institute (JGI) 3300018438 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 552464 597 1 0 1 0 SRX3981512 Unrestricted 0.0 single_particle_sort 3300050829 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_F10_SVS DOE Joint Genome Institute (JGI) 3300050829 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 50508 54 0 0 0 0 Restricted 0.0 single_particle_sort 3300024134 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Luteibacter bacterium JGI PFNR15_N11 DOE Joint Genome Institute (JGI) 3300024134 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 761439 783 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300071189 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_edMDA_B08_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071189 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 1240674 1271 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300023974 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.05.G17 DOE Joint Genome Institute (JGI) 3300023974 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 1748184 1743 0 0 0 0 SRX4391057 Unrestricted 0.0 single_particle_sort 3300015390 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Peregrinibacteria bacterium SCGC_AG-128-I19 DOE Joint Genome Institute (JGI) 3300015390 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 606475 698 2 0 3 0 SRX3577015 Unrestricted 0.0 single_particle_sort 3300015113 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-F10 DOE Joint Genome Institute (JGI) 3300015113 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 364913 427 1 0 0 0 SRX3578329 Unrestricted 0.0 single_particle_sort 3300033287 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.N13 DOE Joint Genome Institute (JGI) 3300033287 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 202867 221 0 0 0 0 SRX7630603 Unrestricted 0.0 single_particle_sort 3300019409 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16035 DOE Joint Genome Institute (JGI) 3300019409 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 1801531 2027 1 0 1 0 SRX3986861 Unrestricted 0.0 single_particle_sort 3300019922 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-L4 DOE Joint Genome Institute (JGI) 3300019922 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 905665 978 0 0 0 0 SRX4663355 Unrestricted 0.0 single_particle_sort 3300032606 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.N11 DOE Joint Genome Institute (JGI) 3300032606 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 1963690 2989 0 0 0 0 SRX6433601 Unrestricted 0.0 single_particle_sort 3300022085 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Norwegian Sea - JL-ETNP-Z39_bacterium_AG-205-A06 DOE Joint Genome Institute (JGI) 3300022085 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Sediment Marine Unclassified marine sediment 73.3565 0.1223 879843 792 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300038263 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.05.E9 DOE Joint Genome Institute (JGI) 3300038263 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 169512 288 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300024778 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-J14 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024778 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 165668 203 0 0 0 0 0.0 single_particle_sort 3300041372 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.F5 DOE Joint Genome Institute (JGI) 3300041372 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 530011 615 0 0 0 0 SRX9648535 Unrestricted 0.0 single_particle_sort 3300016137 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-M06 DOE Joint Genome Institute (JGI) 3300016137 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 658990 644 0 0 0 0 SRX3563040 Unrestricted 0.0 single_particle_sort 3300013302 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - EM3 bacterium JGI GBS_6_F18 DOE Joint Genome Institute (JGI) 3300013302 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Near-boiling (>90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1622021 1440 1 0 1 0 SRX4808264 Unrestricted 0.0 single_particle_sort 3300015490 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-D09 DOE Joint Genome Institute (JGI) 3300015490 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 227924 299 0 0 0 0 SRX3556431 Unrestricted 0.0 single_particle_sort 3300038217 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.E20 DOE Joint Genome Institute (JGI) 3300038217 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 413980 475 1 0 1 0 SRX9411050 Unrestricted 0.0 single_particle_sort 3300016065 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-H15 DOE Joint Genome Institute (JGI) 3300016065 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 419696 547 0 0 0 0 SRX3560697 Unrestricted 0.0 single_particle_sort 3300019670 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16016 DOE Joint Genome Institute (JGI) 3300019670 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 265138 281 1 0 1 0 SRX3985665 Unrestricted 0.0 single_particle_sort 3300071256 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_Wchmk_A10_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071256 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 419759 481 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015120 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-N07 DOE Joint Genome Institute (JGI) 3300015120 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 432700 493 1 0 0 0 SRX3578338 Unrestricted 0.0 single_particle_sort 3300018338 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_C7 DOE Joint Genome Institute (JGI) 3300018338 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1419637 1390 1 0 1 0 SRX4649190 Unrestricted 0.0 single_particle_sort 3300016165 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacterium bacterium SCGC_AG-582-G11 DOE Joint Genome Institute (JGI) 3300016165 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 657562 684 2 0 0 0 SRX3579962 Unrestricted 0.0 single_particle_sort 3300016037 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-578-O14 DOE Joint Genome Institute (JGI) 3300016037 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 449002 519 1 0 0 0 SRX3579700 Unrestricted 0.0 single_particle_sort 3300015020 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.F9 DOE Joint Genome Institute (JGI) 3300015020 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 329452 404 1 0 1 0 Restricted 0.0 single_particle_sort 3300015035 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.H17 DOE Joint Genome Institute (JGI) 3300015035 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 382112 496 1 0 1 0 Restricted 0.0 single_particle_sort 3300024677 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-M15 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024677 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 75355 107 0 0 0 0 0.0 single_particle_sort 3300035839 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0815.Sybr.01.L7 DOE Joint Genome Institute (JGI) 3300035839 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 856540 981 0 0 1 0 SRX8894643 Unrestricted 0.0 single_particle_sort 3300071212 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_A05_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071212 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 2029463 2340 5 0 3 0 Unrestricted 0.0 single_particle_sort 3300015135 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-D23 DOE Joint Genome Institute (JGI) 3300015135 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 604618 626 0 0 0 0 SRX3578316 Unrestricted 0.0 single_particle_sort 3300024877 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.05.I5 DOE Joint Genome Institute (JGI) 3300024877 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 109303 113 0 0 0 0 SRX4390955 Unrestricted 0.0 single_particle_sort 3300035995 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.J10 DOE Joint Genome Institute (JGI) 3300035995 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 829006 896 0 0 0 0 SRX8856236 Unrestricted 0.0 single_particle_sort 3300016510 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-B22 DOE Joint Genome Institute (JGI) 3300016510 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 394562 427 0 0 0 0 SRX3785635 Unrestricted 0.0 single_particle_sort 3300018197 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_E12 DOE Joint Genome Institute (JGI) 3300018197 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 474800 507 0 0 0 0 SRX4651175 Unrestricted 0.0 single_particle_sort 3300051113 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_J14_SVS DOE Joint Genome Institute (JGI) 3300051113 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 140134 181 0 0 0 0 Restricted 0.0 single_particle_sort 3300032558 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.E16 DOE Joint Genome Institute (JGI) 3300032558 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 504112 552 0 0 0 0 SRX6426336 Unrestricted 0.0 single_particle_sort 3300024654 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-G11 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024654 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 78339 83 0 0 0 0 0.0 single_particle_sort 3300023373 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.K13 DOE Joint Genome Institute (JGI) 3300023373 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 461141 531 0 0 0 0 SRX4548985 Unrestricted 0.0 single_particle_sort 3300016312 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-578-I21 DOE Joint Genome Institute (JGI) 3300016312 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 683029 768 1 0 0 0 SRX3579216 Unrestricted 0.0 single_particle_sort 3300015802 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-E13 DOE Joint Genome Institute (JGI) 3300015802 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 188898 266 0 0 0 0 SRX3560936 Unrestricted 0.0 single_particle_sort 3300051013 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_M22_SVS DOE Joint Genome Institute (JGI) 3300051013 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 136227 160 0 0 0 0 Restricted 0.0 single_particle_sort 3300016398 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-K21 DOE Joint Genome Institute (JGI) 3300016398 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 860622 975 1 0 1 0 SRX3563843 Unrestricted 0.0 single_particle_sort 3300018097 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - uncultured microorganism JGI MDM2 ZSSED05-1-L18 DOE Joint Genome Institute (JGI) 3300018097 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 175851 205 0 0 0 0 SRX3917282 Unrestricted 0.0 single_particle_sort 3300022618 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Rhizobiales bacterium JGI PCGPRD042217_8 DOE Joint Genome Institute (JGI) 3300022618 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 380590 463 0 0 1 0 SRX4414688 Unrestricted 0.0 single_particle_sort 3300024719 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-M07 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024719 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 115275 144 0 0 0 0 0.0 single_particle_sort 3300023346 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.L5 DOE Joint Genome Institute (JGI) 3300023346 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 908711 1008 0 0 0 0 SRX4549226 Unrestricted 0.0 single_particle_sort 3300033840 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.N21 DOE Joint Genome Institute (JGI) 3300033840 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 1076859 1021 0 0 1 0 SRX7630465 Unrestricted 0.0 single_particle_sort 3300010814 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_22_SCGC_AG-138-I23 DOE Joint Genome Institute (JGI) 3300010814 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 450979 539 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300018460 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Actinobacteria_bacterium_SCGC_AG-650-O07 DOE Joint Genome Institute (JGI) 3300018460 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1579051 1514 1 0 1 0 SRX3979967 Unrestricted 0.0 single_particle_sort 3300023004 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - S2R-29 bacterium JGI MDM2 DC4-3-J22 DOE Joint Genome Institute (JGI) 3300023004 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 1705132 1630 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300035729 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_D7 DOE Joint Genome Institute (JGI) 3300035729 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 47056 58 0 0 0 0 SRX10045218 Unrestricted 0.0 single_particle_sort 3300010759 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_3_SCGC_AG-159-A10 DOE Joint Genome Institute (JGI) 3300010759 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 209655 229 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300023748 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.M13 DOE Joint Genome Institute (JGI) 3300023748 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 101261 132 0 0 0 0 SRX4548056 Unrestricted 0.0 single_particle_sort 3300015579 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-L06 DOE Joint Genome Institute (JGI) 3300015579 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 735543 888 0 0 0 0 SRX3549915 Unrestricted 0.0 single_particle_sort 3300023991 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.N20 DOE Joint Genome Institute (JGI) 3300023991 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 2158002 2109 1 0 1 0 SRX4549587 Unrestricted 0.0 single_particle_sort 3300016356 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - Euryarchaeota_archaeum_SCGC_AG-640-M17 DOE Joint Genome Institute (JGI) 3300016356 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 767717 847 1 0 1 0 SRX3784278 Unrestricted 0.0 single_particle_sort 3300041129 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.I14 DOE Joint Genome Institute (JGI) 3300041129 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2413085 2480 0 0 1 0 SRX9668777 Unrestricted 0.0 single_particle_sort 3300033950 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.M13 DOE Joint Genome Institute (JGI) 3300033950 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 362985 405 0 0 0 0 SRX7626282 Unrestricted 0.0 single_particle_sort 3300014432 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.J21 DOE Joint Genome Institute (JGI) 3300014432 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 794945 966 0 0 1 0 SRX3366651 Unrestricted 0.0 single_particle_sort 3300033339 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.N7 DOE Joint Genome Institute (JGI) 3300033339 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 389368 478 0 0 0 0 SRX7630497 Unrestricted 0.0 single_particle_sort 3300023446 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.F16 DOE Joint Genome Institute (JGI) 3300023446 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 270032 235 0 0 0 0 SRX4548460 Unrestricted 0.0 single_particle_sort 3300050990 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 173_A8_SVS DOE Joint Genome Institute (JGI) 3300050990 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 28433 44 0 0 0 0 Restricted 0.0 single_particle_sort 3300016128 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-274-B18 DOE Joint Genome Institute (JGI) 3300016128 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 546239 630 1 0 1 0 SRX3578244 Unrestricted 0.0 single_particle_sort 3300013890 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.M20 DOE Joint Genome Institute (JGI) 3300013890 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 772162 935 0 0 0 0 SRX3366716 Unrestricted 0.0 single_particle_sort 3300032583 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.E7 DOE Joint Genome Institute (JGI) 3300032583 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 135057 145 0 0 0 0 SRX6452413 Unrestricted 0.0 single_particle_sort 3300016498 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-F17 DOE Joint Genome Institute (JGI) 3300016498 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 235628 256 0 0 1 0 SRX3577181 Unrestricted 0.0 single_particle_sort 3300016412 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-L04 DOE Joint Genome Institute (JGI) 3300016412 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 1162828 1072 0 0 0 0 SRX3578199 Unrestricted 0.0 single_particle_sort 3300036746 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.M17.redo DOE Joint Genome Institute (JGI) 3300036746 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 2767618 3160 1 0 1 0 SRX8910185 Unrestricted 0.0 single_particle_sort 3300016028 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-K09 DOE Joint Genome Institute (JGI) 3300016028 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 431951 506 0 0 0 0 SRX3560715 Unrestricted 0.0 single_particle_sort 3300016523 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from underground thermal water from 5P borehole, Tomsk, Russia - Microgenometes_bacterium_SCGC_AG-716-P14 DOE Joint Genome Institute (JGI) 3300016523 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole Groundwater 58.0758 82.8374 7.49-7.6 454493 549 1 0 1 0 SRX3782168 Unrestricted 0.0 single_particle_sort 3300023473 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.D10 DOE Joint Genome Institute (JGI) 3300023473 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 1648551 1639 1 0 1 0 SRX4548273 Unrestricted 0.0 single_particle_sort 3300018327 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Microgenometes_bacterium_SCGC_AG-650-J04 DOE Joint Genome Institute (JGI) 3300018327 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1334033 1360 1 0 1 0 SRX3981788 Unrestricted 0.0 single_particle_sort 3300051120 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_M8_SVS DOE Joint Genome Institute (JGI) 3300051120 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 40718 42 0 0 0 0 Restricted 0.0 single_particle_sort 3300018151 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-F02 DOE Joint Genome Institute (JGI) 3300018151 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 514406 605 0 0 0 0 SRX3974519 Unrestricted 0.0 single_particle_sort 3300013254 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.B22 DOE Joint Genome Institute (JGI) 3300013254 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 578050 747 0 0 0 0 SRX3366793 Unrestricted 0.0 single_particle_sort 3300023847 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.F9 DOE Joint Genome Institute (JGI) 3300023847 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 628052 653 0 0 0 0 SRX4526055 Unrestricted 0.0 single_particle_sort 3300014332 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.C19 DOE Joint Genome Institute (JGI) 3300014332 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 956066 1156 1 0 2 0 SRX3366830 Unrestricted 0.0 single_particle_sort 3300041614 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.2.G10 DOE Joint Genome Institute (JGI) 3300041614 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 277603 283 0 0 0 0 SRX14833816 Unrestricted 0.0 single_particle_sort 3300015945 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-E18 DOE Joint Genome Institute (JGI) 3300015945 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 355270 407 0 0 0 0 SRX3550884 Unrestricted 0.0 single_particle_sort 3300051067 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_L10_SVS DOE Joint Genome Institute (JGI) 3300051067 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 114625 156 0 0 0 0 Restricted 0.0 single_particle_sort 3300016456 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - Chloroflexi_bacterium_SCGC_AG-640-P23 DOE Joint Genome Institute (JGI) 3300016456 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 1367283 1432 1 0 1 0 SRX3784312 Unrestricted 0.0 single_particle_sort 3300015655 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from unchlorinated drinking water from Apeldoorn WTP, Netherlands - VDW.1.2014 0529 MDM2 VDW1 p1 pyro.G14.double-seq DOE Joint Genome Institute (JGI) 3300015655 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Drinking water Freshwater Unchlorinated Freshwater 52.2278 5.919 685984 830 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300036641 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.G22 DOE Joint Genome Institute (JGI) 3300036641 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 1179191 1330 0 0 0 0 SRX8904629 Unrestricted 0.0 single_particle_sort 3300051135 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_P9_SVS DOE Joint Genome Institute (JGI) 3300051135 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 121405 178 0 0 0 0 Restricted 0.0 single_particle_sort 3300019514 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from Echinus Geyser water, Yellowstone National Park, Wyoming, United States - NAG2 archaeon OSP418 JGI 000156CP-G06 DOE Joint Genome Institute (JGI) 3300019514 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Acidic hot water 44.7225 -110.7014 849527 1047 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023647 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.I8 DOE Joint Genome Institute (JGI) 3300023647 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 282597 333 0 0 0 0 SRX4415618 Unrestricted 0.0 single_particle_sort 3300023957 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.N15 DOE Joint Genome Institute (JGI) 3300023957 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 1329806 1352 0 0 0 0 SRX4502466 Unrestricted 0.0 single_particle_sort 3300015855 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-F20 DOE Joint Genome Institute (JGI) 3300015855 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 145722 197 0 0 1 0 SRX3546986 Unrestricted 0.0 single_particle_sort 3300018360 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Planctomycetacia_bacterium_SCGC_AG-650-G09 DOE Joint Genome Institute (JGI) 3300018360 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 2072161 1675 1 0 0 0 SRX3981802 Unrestricted 0.0 single_particle_sort 3300038047 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.H14 DOE Joint Genome Institute (JGI) 3300038047 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 985825 1252 0 0 0 0 SRX9411288 Unrestricted 0.0 single_particle_sort 3300019543 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-O08 DOE Joint Genome Institute (JGI) 3300019543 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 32448 37 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300018248 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Acidobacteria_bacterium_SCGC_AG-650-D16 DOE Joint Genome Institute (JGI) 3300018248 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 845858 821 1 0 1 0 SRX3974431 Unrestricted 0.0 single_particle_sort 3300018179 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_N7 DOE Joint Genome Institute (JGI) 3300018179 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 311150 338 0 0 0 0 SRX4652582 Unrestricted 0.0 single_particle_sort 3300038089 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .D6 DOE Joint Genome Institute (JGI) 3300038089 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 456259 649 0 0 0 0 SRX9411546 Unrestricted 0.0 single_particle_sort 3300019576 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-J16 DOE Joint Genome Institute (JGI) 3300019576 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 38850 58 0 0 0 0 SRX3561050 Unrestricted 0.0 single_particle_sort 3300023889 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.D19 DOE Joint Genome Institute (JGI) 3300023889 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 791437 870 1 0 1 0 SRX4520793 Unrestricted 0.0 single_particle_sort 3300016595 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - SAR46_bacterium_SCGC_AG-640-I04 DOE Joint Genome Institute (JGI) 3300016595 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 2378948 2062 1 0 1 0 SRX3784281 Unrestricted 0.0 single_particle_sort 3300035910 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_C8 DOE Joint Genome Institute (JGI) 3300035910 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 103578 133 0 0 0 0 SRX10045221 Unrestricted 0.0 single_particle_sort 3300014428 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.D06 DOE Joint Genome Institute (JGI) 3300014428 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 870616 923 0 0 0 0 SRX3298889 Unrestricted 0.0 single_particle_sort 3300041643 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.D14 DOE Joint Genome Institute (JGI) 3300041643 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2718389 2441 1 0 0 0 SRX14844642 Unrestricted 0.0 single_particle_sort 3300038189 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.E13 DOE Joint Genome Institute (JGI) 3300038189 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 778580 894 0 0 1 0 SRX9411810 Unrestricted 0.0 single_particle_sort 3300050906 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-A10 DOE Joint Genome Institute (JGI) 3300050906 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 1016392 1009 0 0 0 0 Restricted 0.0 single_particle_sort 3300015597 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown bacterium SCGC_AG-122-P21 DOE Joint Genome Institute (JGI) 3300015597 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 15945910 9743 0 0 0 0 SRX3574137 Unrestricted 0.0 single_particle_sort 3300041202 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.K13 DOE Joint Genome Institute (JGI) 3300041202 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 545101 543 0 0 0 0 SRX9657100 Unrestricted 0.0 single_particle_sort 3300022984 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.K6 DOE Joint Genome Institute (JGI) 3300022984 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 689000 897 0 0 0 0 SRX4416585 Unrestricted 0.0 single_particle_sort 3300019960 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-H15 DOE Joint Genome Institute (JGI) 3300019960 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 336108 382 0 0 0 0 SRX4655644 Unrestricted 0.0 single_particle_sort 3300033282 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.I12 DOE Joint Genome Institute (JGI) 3300033282 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 358704 432 0 0 0 0 SRX7630596 Unrestricted 0.0 single_particle_sort 3300023221 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - Chlorobi bacterium JGI GBS_4_K19 DOE Joint Genome Institute (JGI) 3300023221 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 5197982 4651 2 0 2 0 Unrestricted 0.0 single_particle_sort 3300071263 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_WGAX_H11_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071263 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 141055 168 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300050933 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-N08 DOE Joint Genome Institute (JGI) 3300050933 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 530794 604 0 0 0 0 Restricted 0.0 single_particle_sort 3300071217 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_H05_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071217 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 3064016 3053 1 0 3 0 Unrestricted 0.0 single_particle_sort 3300035923 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.N11 DOE Joint Genome Institute (JGI) 3300035923 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 871851 972 1 0 1 0 SRX8862035 Unrestricted 0.0 single_particle_sort 3300038256 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.C5 DOE Joint Genome Institute (JGI) 3300038256 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 275088 394 0 0 0 0 SRX9411190 Unrestricted 0.0 single_particle_sort 3300041255 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.C20 DOE Joint Genome Institute (JGI) 3300041255 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 760151 789 1 0 1 0 SRX9651727 Unrestricted 0.0 single_particle_sort 3300014328 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.H08 DOE Joint Genome Institute (JGI) 3300014328 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 343311 432 1 0 1 0 SRX3299015 Unrestricted 0.0 single_particle_sort 3300033908 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.G16 DOE Joint Genome Institute (JGI) 3300033908 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 175601 225 0 0 0 0 SRX7626531 Unrestricted 0.0 single_particle_sort 3300024672 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-E08 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024672 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 75856 101 0 0 0 0 0.0 single_particle_sort 3300010843 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_42_CGC_AG-138-O06 DOE Joint Genome Institute (JGI) 3300010843 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 915869 914 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300050915 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-E09 DOE Joint Genome Institute (JGI) 3300050915 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 911114 968 0 0 0 0 Restricted 0.0 single_particle_sort 3300022969 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.J7 DOE Joint Genome Institute (JGI) 3300022969 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 267647 316 0 0 0 0 SRX4420715 Unrestricted 0.0 single_particle_sort 3300033261 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.E21 DOE Joint Genome Institute (JGI) 3300033261 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 135952 164 0 0 0 0 SRX7630662 Unrestricted 0.0 single_particle_sort 3300024872 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.G19 DOE Joint Genome Institute (JGI) 3300024872 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 75624 82 0 0 0 0 SRX4390132 Unrestricted 0.0 single_particle_sort 3300022270 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Hadesarchaea_archaeum_SCGC_AH-147-E08 Bigelow Laboratory for Ocean Sciences 3300022270 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 495988 610 1 0 1 0 0.0 single_particle_sort 3300022031 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Atribacteria bacterium JGI MDM2 LBsed72-2-K21 DOE Joint Genome Institute (JGI) 3300022031 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment freshwater sediment 53.7598 107.9791 655820 761 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300041377 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.J6 DOE Joint Genome Institute (JGI) 3300041377 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1767499 1856 0 0 1 0 SRX9644935 Unrestricted 0.0 single_particle_sort 3300023864 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.L10 DOE Joint Genome Institute (JGI) 3300023864 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 687372 741 0 0 1 0 SRX4549808 Unrestricted 0.0 single_particle_sort 3300034704 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.1.M13 DOE Joint Genome Institute (JGI) 3300034704 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 393842 445 1 0 0 0 SRX8390424 Unrestricted 0.0 single_particle_sort 3300016132 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-578-E16 DOE Joint Genome Institute (JGI) 3300016132 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 520920 632 0 0 1 0 SRX3579196 Unrestricted 0.0 single_particle_sort 3300038212 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.H6 DOE Joint Genome Institute (JGI) 3300038212 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 1325608 1573 1 0 0 0 SRX9411033 Unrestricted 0.0 single_particle_sort 3300022131 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.G16 DOE Joint Genome Institute (JGI) 3300022131 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 2972369 2706 1 0 1 0 SRX3997825 Unrestricted 0.0 single_particle_sort 3300010771 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.H3 DOE Joint Genome Institute (JGI) 3300010771 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 234400 275 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015934 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-578-J18 DOE Joint Genome Institute (JGI) 3300015934 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 304468 388 1 0 1 0 SRX3579219 Unrestricted 0.0 single_particle_sort 3300034576 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.E16 DOE Joint Genome Institute (JGI) 3300034576 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 700115 767 1 0 1 0 SRX8394083 Unrestricted 0.0 single_particle_sort 3300051144 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_B20_SVS DOE Joint Genome Institute (JGI) 3300051144 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 45667 62 0 0 0 0 Restricted 0.0 single_particle_sort 3300038064 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.H10 DOE Joint Genome Institute (JGI) 3300038064 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 381784 439 0 0 0 0 SRX9411442 Unrestricted 0.0 single_particle_sort 3300021709 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.K7 DOE Joint Genome Institute (JGI) 3300021709 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 423135 480 0 0 0 0 SRX3990004 Unrestricted 0.0 single_particle_sort 3300015551 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-E05 DOE Joint Genome Institute (JGI) 3300015551 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 586240 663 0 0 0 0 SRX3549932 Unrestricted 0.0 single_particle_sort 3300016032 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacterium bacterium SCGC_AG-582-B19 DOE Joint Genome Institute (JGI) 3300016032 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 492351 508 1 0 0 0 SRX3579940 Unrestricted 0.0 single_particle_sort 3300032500 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.J12 DOE Joint Genome Institute (JGI) 3300032500 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 786474 877 1 0 1 0 SRX6426625 Unrestricted 0.0 single_particle_sort 3300023619 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.E4 DOE Joint Genome Institute (JGI) 3300023619 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 1064064 1180 0 0 1 0 SRX4415513 Unrestricted 0.0 single_particle_sort 3300033932 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.M18 DOE Joint Genome Institute (JGI) 3300033932 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 1007469 1126 0 0 0 0 SRX7630461 Unrestricted 0.0 single_particle_sort 3300038261 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.05.I17 DOE Joint Genome Institute (JGI) 3300038261 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 24716 27 0 0 1 0 SRX9411214 Unrestricted 0.0 single_particle_sort 3300023394 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.K5 DOE Joint Genome Institute (JGI) 3300023394 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 142356 157 0 0 0 0 SRX4548977 Unrestricted 0.0 single_particle_sort 3300015970 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-K18 DOE Joint Genome Institute (JGI) 3300015970 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 359363 436 0 0 0 0 SRX3562998 Unrestricted 0.0 single_particle_sort 3300014450 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.K21 DOE Joint Genome Institute (JGI) 3300014450 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1231606 1387 0 0 0 0 SRX3368364 Unrestricted 0.0 single_particle_sort 3300038019 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.I6 DOE Joint Genome Institute (JGI) 3300038019 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 44657 58 0 0 0 0 SRX9410596 Unrestricted 0.0 single_particle_sort 3300023819 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.F17 DOE Joint Genome Institute (JGI) 3300023819 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 527395 528 0 0 0 0 SRX4549815 Unrestricted 0.0 single_particle_sort 3300033256 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, Ontario, Canada - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.J11 DOE Joint Genome Institute (JGI) 3300033256 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 65414 74 0 0 0 0 SRX7630691 Unrestricted 0.0 single_particle_sort 3300023754 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.I19 DOE Joint Genome Institute (JGI) 3300023754 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 135142 168 0 0 0 0 SRX4548013 Unrestricted 0.0 single_particle_sort 3300035980 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.I10 DOE Joint Genome Institute (JGI) 3300035980 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 486431 517 1 0 1 0 SRX8854177 Unrestricted 0.0 single_particle_sort 3300016536 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-188-D05 DOE Joint Genome Institute (JGI) 3300016536 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 656136 720 1 0 1 0 SRX3577120 Unrestricted 0.0 single_particle_sort 3300038119 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .M6 DOE Joint Genome Institute (JGI) 3300038119 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 330215 458 0 0 0 0 SRX9411656 Unrestricted 0.0 single_particle_sort 3300016239 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-G06 DOE Joint Genome Institute (JGI) 3300016239 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 448858 535 0 0 1 0 SRX3562931 Unrestricted 0.0 single_particle_sort 3300037898 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.K11 DOE Joint Genome Institute (JGI) 3300037898 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 43743 64 0 0 0 0 SRX9409785 Unrestricted 0.0 single_particle_sort 3300016108 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-F22 DOE Joint Genome Institute (JGI) 3300016108 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 521900 590 0 0 0 0 SRX3540071 Unrestricted 0.0 single_particle_sort 3300048724 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 159_E2_SVS DOE Joint Genome Institute (JGI) 3300048724 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 46287 85 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300051000 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 173_N8_SVS DOE Joint Genome Institute (JGI) 3300051000 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 18552 33 0 0 0 0 Restricted 0.0 single_particle_sort 3300032338 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.D13 DOE Joint Genome Institute (JGI) 3300032338 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 667059 718 0 0 0 0 SRX6433335 Unrestricted 0.0 single_particle_sort 3300015111 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-E08 DOE Joint Genome Institute (JGI) 3300015111 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 359011 404 0 0 0 0 SRX3578315 Unrestricted 0.0 single_particle_sort 3300037946 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.L20 DOE Joint Genome Institute (JGI) 3300037946 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 276172 349 0 0 0 0 SRX9410957 Unrestricted 0.0 single_particle_sort 3300034740 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.1.C8 DOE Joint Genome Institute (JGI) 3300034740 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 293796 334 0 0 0 0 SRX8390259 Unrestricted 0.0 single_particle_sort 3300015011 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.H20 DOE Joint Genome Institute (JGI) 3300015011 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 303538 364 0 0 0 0 Restricted 0.0 single_particle_sort 3300018307 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Chloroflexia_bacterium_SCGC_AG-650-G08 DOE Joint Genome Institute (JGI) 3300018307 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1333993 1247 0 0 0 0 SRX3979395 Unrestricted 0.0 single_particle_sort 3300032631 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.I14 DOE Joint Genome Institute (JGI) 3300032631 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 442785 460 1 0 1 0 SRX6431191 Unrestricted 0.0 single_particle_sort 3300015566 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - WS6 bacterium SCGC_AG-122-M16 DOE Joint Genome Institute (JGI) 3300015566 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 719227 720 1 0 1 0 SRX3573105 Unrestricted 0.0 single_particle_sort 3300033298 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.H8 DOE Joint Genome Institute (JGI) 3300033298 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 359725 422 0 0 0 0 SRX7630533 Unrestricted 0.0 single_particle_sort 3300024648 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-M11 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024648 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 58770 84 0 0 0 0 0.0 single_particle_sort 3300016008 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG_AG-578-I13 DOE Joint Genome Institute (JGI) 3300016008 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 423624 478 1 0 1 0 SRX3579214 Unrestricted 0.0 single_particle_sort 3300033212 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.G15 DOE Joint Genome Institute (JGI) 3300033212 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 250587 292 0 0 0 0 SRX7629301 Unrestricted 0.0 single_particle_sort 3300016503 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-E14 DOE Joint Genome Institute (JGI) 3300016503 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 321780 324 0 0 0 0 SRX3784752 Unrestricted 0.0 single_particle_sort 3300032544 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.G13 DOE Joint Genome Institute (JGI) 3300032544 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 1049707 1084 0 0 1 0 SRX6451835 Unrestricted 0.0 single_particle_sort 3300037973 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.N6 DOE Joint Genome Institute (JGI) 3300037973 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 52192 67 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035709 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_J10 DOE Joint Genome Institute (JGI) 3300035709 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 169447 202 0 0 0 0 SRX10045479 Unrestricted 0.0 single_particle_sort 3300033189 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.I22 DOE Joint Genome Institute (JGI) 3300033189 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 643819 641 0 0 0 0 SRX7630269 Unrestricted 0.0 single_particle_sort 3300071287 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_Wchmk_G09_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071287 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 780112 831 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300033875 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.I20 DOE Joint Genome Institute (JGI) 3300033875 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 637278 738 1 0 1 0 SRX7626815 Unrestricted 0.0 single_particle_sort 3300023124 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.D15 DOE Joint Genome Institute (JGI) 3300023124 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 954870 1095 1 0 1 0 SRX4518511 Unrestricted 0.0 single_particle_sort 3300035274 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_K9 DOE Joint Genome Institute (JGI) 3300035274 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 70642 88 0 0 0 0 SRX9538043 Unrestricted 0.0 single_particle_sort 3300041109 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.C12 DOE Joint Genome Institute (JGI) 3300041109 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 563225 651 0 0 1 0 SRX9654418 Unrestricted 0.0 single_particle_sort 3300050985 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_P11_SVS DOE Joint Genome Institute (JGI) 3300050985 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 40130 75 0 0 0 0 Restricted 0.0 single_particle_sort 3300026599 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-G08 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026599 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 100051 121 0 0 0 0 0.0 single_particle_sort 3300033675 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P4_O16 DOE Joint Genome Institute (JGI) 3300033675 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 3455 6 0 0 0 0 SRX7531026 Unrestricted 0.0 single_particle_sort 3300015622 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - DC4.3.2014 1216 MDM DC4 p3 16S.L13.double-peak DOE Joint Genome Institute (JGI) 3300015622 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 220902 234 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300041238 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.E18 DOE Joint Genome Institute (JGI) 3300041238 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 867040 866 1 0 1 0 SRX9653939 Unrestricted 0.0 single_particle_sort 3300024747 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-I20 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024747 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 135345 164 0 0 0 0 0.0 single_particle_sort 3300015822 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Armatimonadetes bacterium SCGC_AG-657-K16 DOE Joint Genome Institute (JGI) 3300015822 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 303772 313 0 0 1 0 SRX3601459 Unrestricted 0.0 single_particle_sort 3300018272 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-M03 DOE Joint Genome Institute (JGI) 3300018272 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 919298 944 0 0 0 0 SRX3979391 Unrestricted 0.0 single_particle_sort 3300015765 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-I06 DOE Joint Genome Institute (JGI) 3300015765 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 163967 217 0 0 0 0 SRX3560712 Unrestricted 0.0 single_particle_sort 3300015431 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-F18 DOE Joint Genome Institute (JGI) 3300015431 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 89747 112 0 0 0 0 SRX3549455 Unrestricted 0.0 single_particle_sort 3300048740 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_F11_SVS DOE Joint Genome Institute (JGI) 3300048740 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 113077 203 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300016580 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, USA - Atribacteria_bacterium_SCGC_AG-640-M10 DOE Joint Genome Institute (JGI) 3300016580 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Acidic Artesian spring Sediment Hot spring sediment 34.9956 -98.6889 7.5 1911695 1831 1 0 1 0 SRX3784235 Unrestricted 0.0 single_particle_sort 3300035936 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.E17 DOE Joint Genome Institute (JGI) 3300035936 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 2240949 2348 1 0 1 0 SRX8862508 Unrestricted 0.0 single_particle_sort 3300019569 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Sorted cell/s from deep shales in West Virginia, USA - MahaSR_06_F18 DOE Joint Genome Institute (JGI) 3300019569 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back deep subsurface 39.6017 -79.9761 34502 50 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300022245 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Acetothermia_bacterium_SCGC_AH-151-E04 Bigelow Laboratory for Ocean Sciences 3300022245 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 525902 579 1 0 0 0 0.0 single_particle_sort 3300034724 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P3_P14 DOE Joint Genome Institute (JGI) 3300034724 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 2653 4 0 0 0 0 SRX8136481 Unrestricted 0.0 single_particle_sort 3300015737 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-J05 DOE Joint Genome Institute (JGI) 3300015737 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 99944 125 0 0 0 0 SRX3562472 Unrestricted 0.0 single_particle_sort 3300016382 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-L07 DOE Joint Genome Institute (JGI) 3300016382 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 759606 907 0 0 0 0 SRX3540862 Unrestricted 0.0 single_particle_sort 3300018166 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Acidobacteria_bacterium_SCGC_AG-650-K22 DOE Joint Genome Institute (JGI) 3300018166 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 971660 913 0 0 0 0 SRX3974439 Unrestricted 0.0 single_particle_sort 3300034584 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.E18 DOE Joint Genome Institute (JGI) 3300034584 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 279983 310 0 0 0 0 SRX8394452 Unrestricted 0.0 single_particle_sort 3300024789 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-D14 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024789 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 173492 220 1 0 1 0 0.0 single_particle_sort 3300021729 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.N12 DOE Joint Genome Institute (JGI) 3300021729 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 445238 529 0 0 0 0 SRX4009955 Unrestricted 0.0 single_particle_sort 3300035903 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.F17 DOE Joint Genome Institute (JGI) 3300035903 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 503508 615 1 0 1 0 SRX8899620 Unrestricted 0.0 single_particle_sort 3300032535 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.C10 DOE Joint Genome Institute (JGI) 3300032535 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 633996 704 1 0 1 0 SRX6429039 Unrestricted 0.0 single_particle_sort 3300033928 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.G18 DOE Joint Genome Institute (JGI) 3300033928 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 1103661 1162 1 0 1 0 SRX7630402 Unrestricted 0.0 single_particle_sort 3300032567 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.N11 DOE Joint Genome Institute (JGI) 3300032567 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 2618912 2299 1 0 1 0 SRX6451714 Unrestricted 0.0 single_particle_sort 3300071249 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_C04_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071249 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 1548311 1854 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300018254 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_L21 DOE Joint Genome Institute (JGI) 3300018254 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 885703 843 1 0 1 0 SRX4652745 Unrestricted 0.0 single_particle_sort 3300021995 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - Acetothermia bacterium JGI MDM2 NGM80-2-H7 DOE Joint Genome Institute (JGI) 3300021995 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 443366 496 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300041222 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.D5 DOE Joint Genome Institute (JGI) 3300041222 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1568725 1643 1 0 1 0 SRX9652977 Unrestricted 0.0 single_particle_sort 3300023968 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.D17 DOE Joint Genome Institute (JGI) 3300023968 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1519589 1614 0 0 0 0 SRX4519611 Unrestricted 0.0 single_particle_sort 3300022976 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.I10 DOE Joint Genome Institute (JGI) 3300022976 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 627258 767 0 0 0 0 SRX4416560 Unrestricted 0.0 single_particle_sort 3300015638 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from unchlorinated drinking water from Apeldoorn WTP, Netherlands - VDW.4.2014 0529 MDM2 VDW1 p4 pyro.E14.double-peak DOE Joint Genome Institute (JGI) 3300015638 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Drinking water Freshwater Unchlorinated Freshwater 52.2278 5.919 474223 549 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300016050 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-582-A22 DOE Joint Genome Institute (JGI) 3300016050 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 485619 534 0 0 0 0 SRX3580155 Unrestricted 0.0 single_particle_sort 3300023772 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.I18 DOE Joint Genome Institute (JGI) 3300023772 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 202113 257 0 0 0 0 SRX4389716 Unrestricted 0.0 single_particle_sort 3300026577 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-E13 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300026577 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 21681 25 0 0 0 0 0.0 single_particle_sort 3300022943 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.G5 DOE Joint Genome Institute (JGI) 3300022943 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 26712 27 0 0 0 0 SRX4417807 Unrestricted 0.0 single_particle_sort 3300016150 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG_AG-578-P07 DOE Joint Genome Institute (JGI) 3300016150 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 568165 658 0 0 1 0 SRX3579699 Unrestricted 0.0 single_particle_sort 3300015838 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown bacterium SCGC_AG-657-G04 DOE Joint Genome Institute (JGI) 3300015838 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 305241 336 0 0 0 0 SRX3601167 Unrestricted 0.0 single_particle_sort 3300024764 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-I09 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024764 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 142641 184 0 0 0 0 0.0 single_particle_sort 3300019907 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-M14 DOE Joint Genome Institute (JGI) 3300019907 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 341286 426 0 0 0 0 SRX4663364 Unrestricted 0.0 single_particle_sort 3300019584 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-C12 DOE Joint Genome Institute (JGI) 3300019584 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 37419 60 0 0 0 0 SRX3562635 Unrestricted 0.0 single_particle_sort 3300014408 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.L04 DOE Joint Genome Institute (JGI) 3300014408 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 590689 671 0 0 0 0 SRX3368396 Unrestricted 0.0 single_particle_sort 3300023140 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.I20 DOE Joint Genome Institute (JGI) 3300023140 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 610167 664 0 0 0 0 SRX4509035 Unrestricted 0.0 single_particle_sort 3300016361 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG-582-C15 DOE Joint Genome Institute (JGI) 3300016361 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 778915 857 1 0 0 0 SRX3579947 Unrestricted 0.0 single_particle_sort 3300050926 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-J13 DOE Joint Genome Institute (JGI) 3300050926 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 888535 968 1 0 1 0 Restricted 0.0 single_particle_sort 3300050931 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-L22 DOE Joint Genome Institute (JGI) 3300050931 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 858667 925 1 0 1 0 Restricted 0.0 single_particle_sort 3300071261 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_WGAX_E11_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071261 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 704704 688 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300015588 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown archaeum SCGC_AG-122-I13 DOE Joint Genome Institute (JGI) 3300015588 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 871714 1090 0 0 0 0 SRX3573088 Unrestricted 0.0 single_particle_sort 3300015728 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-G04 DOE Joint Genome Institute (JGI) 3300015728 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 160716 184 0 0 0 0 SRX3560693 Unrestricted 0.0 single_particle_sort 3300016449 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Omnitrophica bacterium SCGC_AG-574-F06 DOE Joint Genome Institute (JGI) 3300016449 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 1551189 1382 1 0 1 0 SRX3578828 Unrestricted 0.0 single_particle_sort 3300018302 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_M21 DOE Joint Genome Institute (JGI) 3300018302 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 1038497 1147 0 0 1 0 SRX4646637 Unrestricted 0.0 single_particle_sort 3300033217 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.H15 DOE Joint Genome Institute (JGI) 3300033217 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 340834 381 0 0 0 0 SRX7629300 Unrestricted 0.0 single_particle_sort 3300022115 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.N4 DOE Joint Genome Institute (JGI) 3300022115 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1641621 1737 1 0 1 0 SRX3998408 Unrestricted 0.0 single_particle_sort 3300036614 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.E11 DOE Joint Genome Institute (JGI) 3300036614 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 1307345 1481 0 0 0 0 SRX8902708 Unrestricted 0.0 single_particle_sort 3300018455 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_K15 DOE Joint Genome Institute (JGI) 3300018455 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 995050 942 0 0 0 0 SRX4650618 Unrestricted 0.0 single_particle_sort 3300033937 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.H11 DOE Joint Genome Institute (JGI) 3300033937 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 75862 94 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300041641 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.G21 DOE Joint Genome Institute (JGI) 3300041641 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2111999 2254 0 0 1 0 SRX14836423 Unrestricted 0.0 single_particle_sort 3300019634 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-I20 DOE Joint Genome Institute (JGI) 3300019634 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 75823 110 0 0 0 0 SRX3561060 Unrestricted 0.0 single_particle_sort 3300022015 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - Candidate_division_AC1_(TA06)_bacterium_AG-188-K14 DOE Joint Genome Institute (JGI) 3300022015 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater, Deep subsurface Drilled well/Borehole groundwater -28.317 27.772 761193 696 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300019541 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - uncultured microorganism JGI MDM2 ZSSED05-1-D12 DOE Joint Genome Institute (JGI) 3300019541 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 26238 35 0 0 0 0 SRX3916439 Unrestricted 0.0 single_particle_sort 3300041348 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.L13 DOE Joint Genome Institute (JGI) 3300041348 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1578246 1520 0 0 0 0 SRX9647029 Unrestricted 0.0 single_particle_sort 3300033965 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.G16 DOE Joint Genome Institute (JGI) 3300033965 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 440047 414 0 0 0 0 SRX7630387 Unrestricted 0.0 single_particle_sort 3300023459 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.L22 DOE Joint Genome Institute (JGI) 3300023459 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 459487 521 0 0 0 0 SRX4548578 Unrestricted 0.0 single_particle_sort 3300016630 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - NC10_bacterium_SCGC_AG-636-L07 DOE Joint Genome Institute (JGI) 3300016630 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 2819083 3012 1 0 1 0 SRX3784388 Unrestricted 0.0 single_particle_sort 3300021639 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.I16 DOE Joint Genome Institute (JGI) 3300021639 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 66196 84 0 0 0 0 SRX4009687 Unrestricted 0.0 single_particle_sort 3300024742 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-F06 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024742 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 125715 164 0 0 0 0 0.0 single_particle_sort 3300015553 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown bacterium SCGC_AG-122-O06 DOE Joint Genome Institute (JGI) 3300015553 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 506331 663 0 0 0 0 SRX3571930 Unrestricted 0.0 single_particle_sort 3300010773 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_46_SCGC_AG-159-P07 DOE Joint Genome Institute (JGI) 3300010773 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 186207 279 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300022133 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.I4 DOE Joint Genome Institute (JGI) 3300022133 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 3848453 3317 1 0 1 0 SRX3993419 Unrestricted 0.0 single_particle_sort 3300016349 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - Chloroflexi_bacterium_SCGC_AG-640-P21 DOE Joint Genome Institute (JGI) 3300016349 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 727155 833 1 0 0 0 SRX3784333 Unrestricted 0.0 single_particle_sort 3300015627 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - DC4.4.2015 0309 DC4 P4 16S.N6.double-peak DOE Joint Genome Institute (JGI) 3300015627 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 253691 329 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300034634 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.H19 DOE Joint Genome Institute (JGI) 3300034634 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1513441 1563 1 0 1 0 SRX8390605 Unrestricted 0.0 single_particle_sort 3300021839 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.F12 DOE Joint Genome Institute (JGI) 3300021839 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 3366507 3801 0 0 0 0 SRX3989440 Unrestricted 0.0 single_particle_sort 3300018277 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_M15 DOE Joint Genome Institute (JGI) 3300018277 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 951902 995 0 0 1 0 SRX4646718 Unrestricted 0.0 single_particle_sort 3300023925 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.L18 DOE Joint Genome Institute (JGI) 3300023925 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1045674 1135 1 0 0 0 SRX4519350 Unrestricted 0.0 single_particle_sort 3300010746 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.N14 DOE Joint Genome Institute (JGI) 3300010746 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 146855 174 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300022033 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Atribacteria bacterium JGI MDM2 LBsed72-1-N19 DOE Joint Genome Institute (JGI) 3300022033 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment freshwater sediment 53.7598 107.9791 996784 1085 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300015827 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-D04 DOE Joint Genome Institute (JGI) 3300015827 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 258413 320 0 0 1 0 SRX3560662 Unrestricted 0.0 single_particle_sort 3300015096 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Mircogenometes bacterium SCGC_AG-274-L21 DOE Joint Genome Institute (JGI) 3300015096 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 244205 251 1 0 1 0 SRX3578336 Unrestricted 0.0 single_particle_sort 3300023359 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.D13 DOE Joint Genome Institute (JGI) 3300023359 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 1885243 1977 1 0 1 0 SRX4548851 Unrestricted 0.0 single_particle_sort 3300032685 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.E11 DOE Joint Genome Institute (JGI) 3300032685 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 354263 394 0 0 0 0 SRX6452545 Unrestricted 0.0 single_particle_sort 3300036029 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_L20 DOE Joint Genome Institute (JGI) 3300036029 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 238445 306 0 0 0 0 SRX10046900 Unrestricted 0.0 single_particle_sort 3300015660 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - DC4.4.2015 0309 DC4 P4 16S.I8.double-peak DOE Joint Genome Institute (JGI) 3300015660 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 890281 1059 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033263 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.H12 DOE Joint Genome Institute (JGI) 3300033263 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 351048 410 1 0 1 0 SRX7630595 Unrestricted 0.0 single_particle_sort 3300022106 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.C17 DOE Joint Genome Institute (JGI) 3300022106 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1354499 1372 1 0 1 0 SRX3998337 Unrestricted 0.0 single_particle_sort 3300010841 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_24_SCGC_AG-159-I08 DOE Joint Genome Institute (JGI) 3300010841 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 710296 878 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300071282 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_H03_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071282 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 2086933 2415 2 0 1 0 Unrestricted 0.0 single_particle_sort 3300023930 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.F13 DOE Joint Genome Institute (JGI) 3300023930 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 1042730 1151 0 0 0 0 SRX4525837 Unrestricted 0.0 single_particle_sort 3300024070 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.M21 DOE Joint Genome Institute (JGI) 3300024070 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 415524 470 1 0 0 0 SRX4501901 Unrestricted 0.0 single_particle_sort 3300023799 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.K5 DOE Joint Genome Institute (JGI) 3300023799 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 359288 421 0 0 1 0 SRX4548020 Unrestricted 0.0 single_particle_sort 3300018355 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_N9 DOE Joint Genome Institute (JGI) 3300018355 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 1591701 1568 1 0 1 0 SRX4646958 Unrestricted 0.0 single_particle_sort 3300015860 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-I04 DOE Joint Genome Institute (JGI) 3300015860 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 155571 209 0 0 0 0 SRX3540659 Unrestricted 0.0 single_particle_sort 3300022006 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, United States - Parcubacteria bacterium JGI MDM2 ZSSED05-1-G22 DOE Joint Genome Institute (JGI) 3300022006 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Acidic Artesian spring Sediment hot spring sediment 34.9956 -98.6889 499781 576 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300035921 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.H22 DOE Joint Genome Institute (JGI) 3300035921 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 422765 469 0 0 0 0 SRX8862013 Unrestricted 0.0 single_particle_sort 3300015426 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-I12 DOE Joint Genome Institute (JGI) 3300015426 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 71779 86 0 0 0 0 SRX3560325 Unrestricted 0.0 single_particle_sort 3300033594 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_G20 DOE Joint Genome Institute (JGI) 3300033594 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 41449 46 0 0 0 0 SRX7525360 Unrestricted 0.0 single_particle_sort 3300015385 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - unknown archaeum SCGC_AG-128-C10 DOE Joint Genome Institute (JGI) 3300015385 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 384897 527 1 0 1 0 SRX3574228 Unrestricted 0.0 single_particle_sort 3300023993 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.J4 DOE Joint Genome Institute (JGI) 3300023993 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 1909036 2158 1 0 1 0 SRX4549246 Unrestricted 0.0 single_particle_sort 3300024369 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Oxalobacteraceae bacterium JGI PFNR15_K21 DOE Joint Genome Institute (JGI) 3300024369 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 65787 83 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300022090 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.C22 DOE Joint Genome Institute (JGI) 3300022090 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1084256 1057 1 0 1 0 SRX3998341 Unrestricted 0.0 single_particle_sort 3300037374 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.H14.redo DOE Joint Genome Institute (JGI) 3300037374 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 611622 702 0 0 0 0 SRX9402802 Unrestricted 0.0 single_particle_sort 3300019645 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-D13 DOE Joint Genome Institute (JGI) 3300019645 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 124468 131 0 0 0 0 SRX3959910 Unrestricted 0.0 single_particle_sort 3300018188 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_G20 DOE Joint Genome Institute (JGI) 3300018188 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 368120 397 0 0 0 0 SRX4652799 Unrestricted 0.0 single_particle_sort 3300015100 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown archaeum SCGC_AG-274-E21 DOE Joint Genome Institute (JGI) 3300015100 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 235332 333 0 0 0 0 SRX3578317 Unrestricted 0.0 single_particle_sort 3300021094 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted archaeal cell/s from hot spring water in Nymph Lake, Yellowstone National Park, Wyoming, USA - Nanoarchaeota archaeon AD-903-B02 Oregon State University 3300021094 Metagenome - Single Particle Sort Spades v2.2.1 Manuscript to be submitted soon No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring water 44.75187 -110.7288 135497 195 0 0 0 0 0.0 single_particle_sort 3300051011 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_M19_SVS DOE Joint Genome Institute (JGI) 3300051011 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 150122 209 0 0 0 0 Restricted 0.0 single_particle_sort 3300019955 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-H4 DOE Joint Genome Institute (JGI) 3300019955 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 222243 238 0 0 0 0 SRX4658042 Unrestricted 0.0 single_particle_sort 3300038078 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.D11 DOE Joint Genome Institute (JGI) 3300038078 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 113261 149 0 0 0 0 SRX9411497 Unrestricted 0.0 single_particle_sort 3300023878 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.I19 DOE Joint Genome Institute (JGI) 3300023878 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 736975 817 1 0 1 0 SRX4549242 Unrestricted 0.0 single_particle_sort 3300038249 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.J13 DOE Joint Genome Institute (JGI) 3300038249 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 361604 492 0 0 0 0 SRX9411122 Unrestricted 0.0 single_particle_sort 3300015732 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-G16 DOE Joint Genome Institute (JGI) 3300015732 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 129183 187 0 0 0 0 SRX3560935 Unrestricted 0.0 single_particle_sort 3300038178 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.K21 DOE Joint Genome Institute (JGI) 3300038178 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 658763 806 1 0 1 0 SRX9411777 Unrestricted 0.0 single_particle_sort 3300033770 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_E17 DOE Joint Genome Institute (JGI) 3300033770 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 16561 22 0 0 0 0 SRX7525356 Unrestricted 0.0 single_particle_sort 3300035257 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_F20 DOE Joint Genome Institute (JGI) 3300035257 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 145605 189 0 0 0 0 SRX9537786 Unrestricted 0.0 single_particle_sort 3300051111 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_G11_SVS DOE Joint Genome Institute (JGI) 3300051111 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 38319 51 0 0 0 0 Restricted 0.0 single_particle_sort 3300015000 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.N18 DOE Joint Genome Institute (JGI) 3300015000 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 236248 291 0 0 0 0 Restricted 0.0 single_particle_sort 3300041260 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.N21 DOE Joint Genome Institute (JGI) 3300041260 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1294090 1358 1 0 1 0 SRX9666162 Unrestricted 0.0 single_particle_sort 3300019902 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-N21 DOE Joint Genome Institute (JGI) 3300019902 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 293655 378 1 0 1 0 SRX4663485 Unrestricted 0.0 single_particle_sort 3300035475 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_K15 DOE Joint Genome Institute (JGI) 3300035475 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 38878 55 0 0 0 0 SRX9540191 Unrestricted 0.0 single_particle_sort 3300019429 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16021 DOE Joint Genome Institute (JGI) 3300019429 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 2302751 2571 1 0 1 0 SRX3985671 Unrestricted 0.0 single_particle_sort 3300015485 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-G20 DOE Joint Genome Institute (JGI) 3300015485 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 229833 269 0 0 0 0 SRX3560315 Unrestricted 0.0 single_particle_sort 3300018299 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-P23 DOE Joint Genome Institute (JGI) 3300018299 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1126327 1094 0 0 0 0 SRX3974913 Unrestricted 0.0 single_particle_sort 3300018153 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_I13 DOE Joint Genome Institute (JGI) 3300018153 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 665333 716 0 0 2 0 SRX4646697 Unrestricted 0.0 single_particle_sort 3300016487 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Sorted cell/s from deep shales in West Virginia, USA - MahaSR_06_L3 DOE Joint Genome Institute (JGI) 3300016487 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back deep subsurface 39.6017 -79.9761 89577 126 0 0 1 0 SRX3577097 Unrestricted 0.0 single_particle_sort 3300023471 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.K10 DOE Joint Genome Institute (JGI) 3300023471 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 1313995 1455 0 0 0 0 SRX4548394 Unrestricted 0.0 single_particle_sort 3300041227 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.J6 DOE Joint Genome Institute (JGI) 3300041227 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 594502 650 0 0 0 0 SRX9653177 Unrestricted 0.0 single_particle_sort 3300016521 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-188-I08 DOE Joint Genome Institute (JGI) 3300016521 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 488330 533 1 0 1 0 SRX3578189 Unrestricted 0.0 single_particle_sort 3300024384 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.N4 DOE Joint Genome Institute (JGI) 3300024384 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 176301 221 0 0 0 0 SRX4547835 Unrestricted 0.0 single_particle_sort 3300032721 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.J19 DOE Joint Genome Institute (JGI) 3300032721 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 899467 992 0 0 1 0 SRX6429429 Unrestricted 0.0 single_particle_sort 3300032581 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.J12 DOE Joint Genome Institute (JGI) 3300032581 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 599505 640 1 0 1 0 SRX6451720 Unrestricted 0.0 single_particle_sort 3300050809 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_O18_SVS DOE Joint Genome Institute (JGI) 3300050809 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 103293 134 0 0 0 0 Restricted 0.0 single_particle_sort 3300023777 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.H21 DOE Joint Genome Institute (JGI) 3300023777 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 245586 300 1 0 1 0 SRX4549244 Unrestricted 0.0 single_particle_sort 3300023986 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.K9 DOE Joint Genome Institute (JGI) 3300023986 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1888952 1969 1 0 0 0 SRX4519332 Unrestricted 0.0 single_particle_sort 3300015383 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - unknown archaeum SCGC_AG-128-O03 DOE Joint Genome Institute (JGI) 3300015383 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 379642 488 0 0 0 0 SRX3577087 Unrestricted 0.0 single_particle_sort 3300013038 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - DC4.3.2014 1216 MDM DC4 p3 16S.N8.double-seq DOE Joint Genome Institute (JGI) 3300013038 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 897366 990 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300018102 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_J8 DOE Joint Genome Institute (JGI) 3300018102 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 245046 260 0 0 0 0 SRX4647590 Unrestricted 0.0 single_particle_sort 3300071319 *Microbiome Permanent Draft Comparing whole genome amplification chemistries for bacterial single cell genomics Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - scBac_WGAX_EnviBac_sc_well3C_S95 Stanford University 3300071319 Metagenome - Single Particle Sort Spades v. 3.15.3 released per request -- IMGSUPP-4358 No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 441621 461 0 0 0 0 0.0 single_particle_sort 3300015697 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-I09 DOE Joint Genome Institute (JGI) 3300015697 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 76570 115 0 0 0 0 SRX3561044 Unrestricted 0.0 single_particle_sort 3300022607 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Sphingomonadales bacterium JGI PCGPRD042217_9 DOE Joint Genome Institute (JGI) 3300022607 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 173956 214 0 0 0 0 SRX4414691 Unrestricted 0.0 single_particle_sort 3300014978 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.N5 DOE Joint Genome Institute (JGI) 3300014978 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 556948 677 1 0 1 0 Restricted 0.0 single_particle_sort 3300015458 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-B10 DOE Joint Genome Institute (JGI) 3300015458 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 128634 172 0 0 0 0 SRX3549918 Unrestricted 0.0 single_particle_sort 3300015897 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-C15 DOE Joint Genome Institute (JGI) 3300015897 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 280761 337 0 0 0 0 SRX3542768 Unrestricted 0.0 single_particle_sort 3300041279 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.E19 DOE Joint Genome Institute (JGI) 3300041279 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 554806 600 1 0 0 0 SRX9653882 Unrestricted 0.0 single_particle_sort 3300036099 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_B19 DOE Joint Genome Institute (JGI) 3300036099 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 34604 52 0 0 0 0 SRX10046562 Unrestricted 0.0 single_particle_sort 3300014387 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.H05 DOE Joint Genome Institute (JGI) 3300014387 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 222487 298 0 0 1 0 SRX3368419 Unrestricted 0.0 single_particle_sort 3300033784 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P4_O17 DOE Joint Genome Institute (JGI) 3300033784 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 18957 20 0 0 0 0 SRX7531022 Unrestricted 0.0 single_particle_sort 3300015026 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.M17 DOE Joint Genome Institute (JGI) 3300015026 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 367073 442 1 0 0 0 Restricted 0.0 single_particle_sort 3300023286 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Deep Lake surface water, Antarctica - Uncultured microbe JGI DeepLkS.SYBR.02.I14 DOE Joint Genome Institute (JGI) 3300023286 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5558 78.1913 278195 303 1 0 1 0 SRX4547880 Unrestricted 0.0 single_particle_sort 3300019953 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-E21 DOE Joint Genome Institute (JGI) 3300019953 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 166708 185 0 0 0 0 SRX4654317 Unrestricted 0.0 single_particle_sort 3300013506 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.G12 DOE Joint Genome Institute (JGI) 3300013506 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1453955 1708 1 0 1 0 SRX3366940 Unrestricted 0.0 single_particle_sort 3300019643 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - archaeum_unknown_SCGC_AG-650-N04 DOE Joint Genome Institute (JGI) 3300019643 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 111407 125 0 0 0 0 SRX3959650 Unrestricted 0.0 single_particle_sort 3300041148 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.G14 DOE Joint Genome Institute (JGI) 3300041148 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 786787 776 0 0 0 0 SRX9654205 Unrestricted 0.0 single_particle_sort 3300023589 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.F18 DOE Joint Genome Institute (JGI) 3300023589 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 290197 334 0 0 0 0 SRX4415709 Unrestricted 0.0 single_particle_sort 3300071250 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_F04_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071250 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 1932469 2354 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300023729 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - SPS NoTemplateControl Ottese.MC29.SYBR.01.G2 DOE Joint Genome Institute (JGI) 3300023729 Metagenome - Single Particle Sort No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 76508 113 0 0 0 0 SRX4519614 Unrestricted 0.0 single_particle_sort 3300015126 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-D14 DOE Joint Genome Institute (JGI) 3300015126 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 449534 549 0 0 1 0 SRX3578313 Unrestricted 0.0 single_particle_sort 3300032479 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.F8 DOE Joint Genome Institute (JGI) 3300032479 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 796712 809 1 0 1 0 SRX6429427 Unrestricted 0.0 single_particle_sort 3300015496 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-L12 DOE Joint Genome Institute (JGI) 3300015496 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 271561 317 0 0 0 0 SRX3550856 Unrestricted 0.0 single_particle_sort 3300019676 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-J05 DOE Joint Genome Institute (JGI) 3300019676 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 349362 372 1 0 1 0 SRX3903187 Unrestricted 0.0 single_particle_sort 3300035748 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.M18 DOE Joint Genome Institute (JGI) 3300035748 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1135694 1236 0 0 0 0 SRX8857586 Unrestricted 0.0 single_particle_sort 3300035991 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.H21 DOE Joint Genome Institute (JGI) 3300035991 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 975870 1023 0 0 0 0 SRX8856230 Unrestricted 0.0 single_particle_sort 3300022044 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Atribacteria bacterium JGI MDM2 LBsed72-1-H19 DOE Joint Genome Institute (JGI) 3300022044 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment freshwater sediment 53.7598 107.9791 964780 1069 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300015851 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-K02 DOE Joint Genome Institute (JGI) 3300015851 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 123631 172 0 0 0 0 SRX3580235 Unrestricted 0.0 single_particle_sort 3300049977 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_O22_SVS DOE Joint Genome Institute (JGI) 3300049977 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 126125 161 0 0 0 0 Restricted 0.0 single_particle_sort 3300035473 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_H15 DOE Joint Genome Institute (JGI) 3300035473 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 24575 45 0 0 0 0 SRX9540140 Unrestricted 0.0 single_particle_sort 3300016049 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-L19 DOE Joint Genome Institute (JGI) 3300016049 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 433899 533 0 0 0 0 SRX3563022 Unrestricted 0.0 single_particle_sort 3300024609 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-D22 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024609 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 35515 45 0 0 0 0 0.0 single_particle_sort 3300032600 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.D12 DOE Joint Genome Institute (JGI) 3300032600 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 451166 553 1 0 1 0 SRX6430396 Unrestricted 0.0 single_particle_sort 3300016278 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-574-G23 DOE Joint Genome Institute (JGI) 3300016278 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 611501 709 1 0 1 0 SRX3578851 Unrestricted 0.0 single_particle_sort 3300051131 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_L23_SVS DOE Joint Genome Institute (JGI) 3300051131 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 146665 155 0 0 0 0 Restricted 0.0 single_particle_sort 3300015651 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from a deep sea mud volcano in Anaximander Mountains, Eastern Mediterranean Sea - B25.2.2014 1114 MDM2 B25 p2 16S.K8.double-peak DOE Joint Genome Institute (JGI) 3300015651 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Mud volcano Marine Unclassified Deep sea volcano 35.3338 30.2722 685758 786 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300015712 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-L22 DOE Joint Genome Institute (JGI) 3300015712 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 139562 165 0 0 0 0 SRX3560727 Unrestricted 0.0 single_particle_sort 3300015941 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-L12 DOE Joint Genome Institute (JGI) 3300015941 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 330247 401 0 0 1 0 SRX3561038 Unrestricted 0.0 single_particle_sort 3300015798 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-E19 DOE Joint Genome Institute (JGI) 3300015798 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 191929 256 0 0 1 0 SRX3563235 Unrestricted 0.0 single_particle_sort 3300015483 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-N22 DOE Joint Genome Institute (JGI) 3300015483 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 216297 257 0 0 0 0 SRX3560449 Unrestricted 0.0 single_particle_sort 3300033769 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_E10 DOE Joint Genome Institute (JGI) 3300033769 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 4567 4 0 0 0 0 SRX7525354 Unrestricted 0.0 single_particle_sort 3300024809 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-C15 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024809 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 235079 267 0 0 0 0 0.0 single_particle_sort 3300016149 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-N09 DOE Joint Genome Institute (JGI) 3300016149 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 577354 655 0 0 1 0 SRX3563030 Unrestricted 0.0 single_particle_sort 3300018155 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_I9 DOE Joint Genome Institute (JGI) 3300018155 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 705234 737 0 0 0 0 SRX4646806 Unrestricted 0.0 single_particle_sort 3300015396 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Omnitrophica bacterium SCGC_AG-128-N06 DOE Joint Genome Institute (JGI) 3300015396 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 733239 762 1 0 1 0 SRX3577082 Unrestricted 0.0 single_particle_sort 3300035957 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.J8 DOE Joint Genome Institute (JGI) 3300035957 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1375315 1460 1 0 1 0 SRX8862689 Unrestricted 0.0 single_particle_sort 3300019988 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-G10 DOE Joint Genome Institute (JGI) 3300019988 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 914701 941 1 0 1 0 SRX4654660 Unrestricted 0.0 single_particle_sort 3300032379 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.L15 DOE Joint Genome Institute (JGI) 3300032379 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 620707 621 0 0 0 0 SRX6655585 Unrestricted 0.0 single_particle_sort 3300034477 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.D11 DOE Joint Genome Institute (JGI) 3300034477 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 577250 632 0 0 0 0 SRX8390215 Unrestricted 0.0 single_particle_sort 3300015756 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-C22 DOE Joint Genome Institute (JGI) 3300015756 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 149486 200 0 0 0 0 SRX3560809 Unrestricted 0.0 single_particle_sort 3300024370 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.J4 DOE Joint Genome Institute (JGI) 3300024370 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 40674 49 0 0 0 0 SRX4547890 Unrestricted 0.0 single_particle_sort 3300023159 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.N17 DOE Joint Genome Institute (JGI) 3300023159 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 1633101 1704 1 0 1 0 SRX4509062 Unrestricted 0.0 single_particle_sort 3300035847 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.M4 DOE Joint Genome Institute (JGI) 3300035847 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 408386 428 0 0 0 0 SRX8896938 Unrestricted 0.0 single_particle_sort 3300021772 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.C13 DOE Joint Genome Institute (JGI) 3300021772 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 772437 919 0 0 0 0 SRX4009957 Unrestricted 0.0 single_particle_sort 3300023910 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.C21 DOE Joint Genome Institute (JGI) 3300023910 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 978782 995 0 0 0 0 SRX4525870 Unrestricted 0.0 single_particle_sort 3300035889 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.J12 DOE Joint Genome Institute (JGI) 3300035889 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 872179 960 0 0 1 0 SRX8898052 Unrestricted 0.0 single_particle_sort 3300019499 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Rhodospirillaceae bacterium HL7711_P1E10 JGI 000155CP-K06 DOE Joint Genome Institute (JGI) 3300019499 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 424358 455 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300033342 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.C11 DOE Joint Genome Institute (JGI) 3300033342 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 1038931 1070 0 0 0 0 SRX7627678 Unrestricted 0.0 single_particle_sort 3300014449 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.L16 DOE Joint Genome Institute (JGI) 3300014449 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1112557 1371 1 0 0 0 SRX3366668 Unrestricted 0.0 single_particle_sort 3300032696 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.M13 DOE Joint Genome Institute (JGI) 3300032696 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 418842 466 1 0 1 0 SRX6429296 Unrestricted 0.0 single_particle_sort 3300024069 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR46.Redo.05.D8 DOE Joint Genome Institute (JGI) 3300024069 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.242 21.4899 201702 236 0 0 0 0 SRX4391213 Unrestricted 0.0 single_particle_sort 3300015879 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-D18 DOE Joint Genome Institute (JGI) 3300015879 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 233044 268 0 0 0 0 SRX3542764 Unrestricted 0.0 single_particle_sort 3300018229 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-C05 DOE Joint Genome Institute (JGI) 3300018229 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 720659 665 0 0 0 0 SRX3978444 Unrestricted 0.0 single_particle_sort 3300022113 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.J18 DOE Joint Genome Institute (JGI) 3300022113 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 2081599 2179 1 0 1 0 SRX3998126 Unrestricted 0.0 single_particle_sort 3300032658 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.N7 DOE Joint Genome Institute (JGI) 3300032658 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 259336 379 0 0 0 0 SRX6431198 Unrestricted 0.0 single_particle_sort 3300016591 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Aminicenantes_bacterium_SCGC_AG-636-M23 DOE Joint Genome Institute (JGI) 3300016591 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Sediment Freshwater Unclassified Freshwater sediment 53.7598 107.9791 7.32 2146813 2013 0 0 1 0 SRX3784477 Unrestricted 0.0 single_particle_sort 3300041297 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.G11 DOE Joint Genome Institute (JGI) 3300041297 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1869731 1862 1 0 1 0 SRX9656330 Unrestricted 0.0 single_particle_sort 3300036077 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_L12 DOE Joint Genome Institute (JGI) 3300036077 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 141262 194 0 0 0 0 SRX10046313 Unrestricted 0.0 single_particle_sort 3300016187 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-274-J05 DOE Joint Genome Institute (JGI) 3300016187 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 631286 721 1 0 1 0 SRX3578260 Unrestricted 0.0 single_particle_sort 3300016610 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, USA - Caldithrix_bacterium_SCGC_AG-640-I23 DOE Joint Genome Institute (JGI) 3300016610 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas Yes 30902854.0 Environmental Aquatic Acidic Artesian spring Sediment Hot spring sediment 34.9956 -98.6889 7.5 2647794 2386 1 0 1 0 SRX3784213 Unrestricted 0.0 single_particle_sort 3300021619 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.G5 DOE Joint Genome Institute (JGI) 3300021619 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 32145 43 0 0 0 0 SRX4009358 Unrestricted 0.0 single_particle_sort 3300018453 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_K5 DOE Joint Genome Institute (JGI) 3300018453 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 880818 908 0 0 0 0 SRX4652589 Unrestricted 0.0 single_particle_sort 3300015502 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-L13 DOE Joint Genome Institute (JGI) 3300015502 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 270105 328 1 0 0 0 SRX3549872 Unrestricted 0.0 single_particle_sort 3300022013 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Atribacteria bacterium JGI MDM2 LBsed72-1-M9 DOE Joint Genome Institute (JGI) 3300022013 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment freshwater sediment 53.7598 107.9791 562938 651 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033963 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.K15 DOE Joint Genome Institute (JGI) 3300033963 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 339137 323 0 0 0 0 SRX7630388 Unrestricted 0.0 single_particle_sort 3300021754 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.J12 DOE Joint Genome Institute (JGI) 3300021754 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 634187 691 0 0 1 0 SRX3990031 Unrestricted 0.0 single_particle_sort 3300016087 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-L13 DOE Joint Genome Institute (JGI) 3300016087 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 455745 569 0 0 1 0 SRX3563848 Unrestricted 0.0 single_particle_sort 3300018388 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_J17 DOE Joint Genome Institute (JGI) 3300018388 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 2199517 2167 0 0 0 0 SRX4646597 Unrestricted 0.0 single_particle_sort 3300034614 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.I17 DOE Joint Genome Institute (JGI) 3300034614 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1213194 1302 0 0 0 0 SRX8394787 Unrestricted 0.0 single_particle_sort 3300021819 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.G12 DOE Joint Genome Institute (JGI) 3300021819 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1755637 1658 0 0 0 0 SRX3989571 Unrestricted 0.0 single_particle_sort 3300032351 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.C17 DOE Joint Genome Institute (JGI) 3300032351 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 457770 482 1 0 1 0 SRX6433345 Unrestricted 0.0 single_particle_sort 3300033917 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.I18 DOE Joint Genome Institute (JGI) 3300033917 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 273409 337 0 0 0 0 SRX7626742 Unrestricted 0.0 single_particle_sort 3300015555 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-I08 DOE Joint Genome Institute (JGI) 3300015555 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 563182 665 0 0 1 0 SRX3549825 Unrestricted 0.0 single_particle_sort 3300036634 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.H20 DOE Joint Genome Institute (JGI) 3300036634 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 1345644 1585 0 0 0 0 SRX8904436 Unrestricted 0.0 single_particle_sort 3300071208 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_PTA_B04_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071208 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 2106692 2413 2 0 3 0 Unrestricted 0.0 single_particle_sort 3300010775 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from aquifer well water in Beatty, Nevada, USA - Cell_enrichment_1_SCGC_AG-159-A03 DOE Joint Genome Institute (JGI) 3300010775 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified Subsurface 36.9645 -116.7229 7.44 247057 328 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300019814 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-K22 DOE Joint Genome Institute (JGI) 3300019814 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 1440027 1646 0 0 0 0 SRX4663350 Unrestricted 0.0 single_particle_sort 3300023923 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.L16 DOE Joint Genome Institute (JGI) 3300023923 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 978462 1124 1 0 1 0 SRX4525177 Unrestricted 0.0 single_particle_sort 3300019399 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16042 DOE Joint Genome Institute (JGI) 3300019399 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 1392416 1617 1 0 1 0 SRX3987102 Unrestricted 0.0 single_particle_sort 3300022035 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Atribacteria bacterium JGI MDM2 LBsed72-1-N14 DOE Joint Genome Institute (JGI) 3300022035 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment freshwater sediment 53.7598 107.9791 737525 845 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300019614 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-J07 DOE Joint Genome Institute (JGI) 3300019614 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 62505 85 0 0 0 0 SRX3560336 Unrestricted 0.0 single_particle_sort 3300022020 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, United States - Parcubacteria bacterium JGI MDM2 ZSSED05-1-C18 DOE Joint Genome Institute (JGI) 3300022020 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Acidic Artesian spring Sediment hot spring sediment 34.9956 -98.6889 654484 709 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300015400 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Omnitrophica bacterium SCGC_AG-128-I04 DOE Joint Genome Institute (JGI) 3300015400 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 793825 784 1 0 1 0 SRX3577011 Unrestricted 0.0 single_particle_sort 3300033265 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.J20 DOE Joint Genome Institute (JGI) 3300033265 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 128599 152 0 0 0 0 SRX7630670 Unrestricted 0.0 single_particle_sort 3300032683 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.D22 DOE Joint Genome Institute (JGI) 3300032683 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 178301 204 0 0 0 0 SRX6452426 Unrestricted 0.0 single_particle_sort 3300050911 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-C11 DOE Joint Genome Institute (JGI) 3300050911 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 633792 616 2 0 2 0 Restricted 0.0 single_particle_sort 3300024084 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.I9 DOE Joint Genome Institute (JGI) 3300024084 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 740787 838 0 0 0 0 SRX4519577 Unrestricted 0.0 single_particle_sort 3300018353 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_I8 DOE Joint Genome Institute (JGI) 3300018353 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 1603436 1534 0 0 1 0 SRX4647018 Unrestricted 0.0 single_particle_sort 3300033237 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.I16 DOE Joint Genome Institute (JGI) 3300033237 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 154205 165 0 0 0 0 SRX7630614 Unrestricted 0.0 single_particle_sort 3300022120 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.J19 DOE Joint Genome Institute (JGI) 3300022120 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 2629220 2648 1 0 1 0 SRX3998266 Unrestricted 0.0 single_particle_sort 3300016557 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, USA - unknown_bacterium_SCGC_AG-640-D22 DOE Joint Genome Institute (JGI) 3300016557 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Acidic Artesian spring Sediment Hot spring sediment 34.9956 -98.6889 7.5 1473679 1311 1 0 1 0 SRX3784211 Unrestricted 0.0 single_particle_sort 3300041251 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.D11 DOE Joint Genome Institute (JGI) 3300041251 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1621351 1743 0 0 0 0 SRX9651693 Unrestricted 0.0 single_particle_sort 3300035864 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0914.Sybr.03.D5 DOE Joint Genome Institute (JGI) 3300035864 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 167354 191 1 0 1 0 SRX8894847 Unrestricted 0.0 single_particle_sort 3300016623 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - Proteobacteria_Deltaproteobacteria_bacterium_SCGC_AG-640-F15 DOE Joint Genome Institute (JGI) 3300016623 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 2699008 2792 1 0 1 0 SRX3784357 Unrestricted 0.0 single_particle_sort 3300024184 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Burkholderia bacterium JGI PFNR15_C11 DOE Joint Genome Institute (JGI) 3300024184 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 140892 175 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300015763 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-K10 DOE Joint Genome Institute (JGI) 3300015763 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 171274 215 1 0 0 0 SRX3562631 Unrestricted 0.0 single_particle_sort 3300032506 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.C14 DOE Joint Genome Institute (JGI) 3300032506 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 115890 135 1 0 1 0 SRX6431206 Unrestricted 0.0 single_particle_sort 3300014382 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.L07 DOE Joint Genome Institute (JGI) 3300014382 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 156079 196 0 0 0 0 SRX3368365 Unrestricted 0.0 single_particle_sort 3300034570 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.G6 DOE Joint Genome Institute (JGI) 3300034570 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 817010 868 0 0 0 0 SRX8393468 Unrestricted 0.0 single_particle_sort 3300023901 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.G18 DOE Joint Genome Institute (JGI) 3300023901 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 856183 922 0 0 1 0 SRX4523164 Unrestricted 0.0 single_particle_sort 3300021678 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.K20 DOE Joint Genome Institute (JGI) 3300021678 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 191999 264 0 0 0 0 SRX4009720 Unrestricted 0.0 single_particle_sort 3300037904 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.E9 DOE Joint Genome Institute (JGI) 3300037904 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 1067699 1257 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300036724 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.L6.redo DOE Joint Genome Institute (JGI) 3300036724 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 1335787 1555 1 0 1 0 SRX8905172 Unrestricted 0.0 single_particle_sort 3300022276 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Acetothermia_bacterium_SCGC_AH-151-E19 Bigelow Laboratory for Ocean Sciences 3300022276 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 664235 706 1 0 1 0 0.0 single_particle_sort 3300016574 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, USA - Aminicenantes_bacterium_SCGC_AG-640-C23 DOE Joint Genome Institute (JGI) 3300016574 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Acidic Artesian spring Sediment Hot spring sediment 34.9956 -98.6889 7.5 1839588 1756 0 0 0 0 SRX3784239 Unrestricted 0.0 single_particle_sort 3300023424 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.E19 DOE Joint Genome Institute (JGI) 3300023424 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1382311 1513 1 0 3 0 SRX4520593 Unrestricted 0.0 single_particle_sort 3300016601 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - PAUC34f_bacterium_SCGC_AG-636-F23 DOE Joint Genome Institute (JGI) 3300016601 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 2128865 2179 1 0 1 0 SRX3784582 Unrestricted 0.0 single_particle_sort 3300018107 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_H19 DOE Joint Genome Institute (JGI) 3300018107 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 194999 247 0 0 0 0 SRX4646763 Unrestricted 0.0 single_particle_sort 3300015618 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from a deep sea mud volcano in Anaximander Mountains, Eastern Mediterranean Sea - B17.1.2014-1113 MDM2 B17 p1 16S.D11.double-peak DOE Joint Genome Institute (JGI) 3300015618 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Mud volcano Marine Unclassified Deep sea volcano 35.7369 30.475 81142 91 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300035905 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.L17 DOE Joint Genome Institute (JGI) 3300035905 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 679491 656 1 0 0 0 SRX8899858 Unrestricted 0.0 single_particle_sort 3300032533 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.I16 DOE Joint Genome Institute (JGI) 3300032533 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 764471 762 1 0 1 0 SRX6427732 Unrestricted 0.0 single_particle_sort 3300033364 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.L5 DOE Joint Genome Institute (JGI) 3300033364 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 301242 344 0 0 0 0 SRX7627191 Unrestricted 0.0 single_particle_sort 3300050789 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_G20_SVS DOE Joint Genome Institute (JGI) 3300050789 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 34500 45 0 0 0 0 Restricted 0.0 single_particle_sort 3300038250 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.I20 DOE Joint Genome Institute (JGI) 3300038250 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 718386 848 0 0 0 0 SRX9411124 Unrestricted 0.0 single_particle_sort 3300016308 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Microgenometes bacterium SCGC_AG-657-C11 DOE Joint Genome Institute (JGI) 3300016308 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 689054 760 1 0 1 0 SRX3594348 Unrestricted 0.0 single_particle_sort 3300015818 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown bacterium SCGC_AG-657-I20 DOE Joint Genome Institute (JGI) 3300015818 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 293205 306 0 0 0 0 SRX3601353 Unrestricted 0.0 single_particle_sort 3300015892 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-M08 DOE Joint Genome Institute (JGI) 3300015892 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 231465 304 0 0 0 0 SRX3549157 Unrestricted 0.0 single_particle_sort 3300014461 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.F12 DOE Joint Genome Institute (JGI) 3300014461 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1271769 1515 0 0 1 0 SRX3366900 Unrestricted 0.0 single_particle_sort 3300021993 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, United States - Dependentiae bacterium JGI MDM2 ZSSED05-1-N21 DOE Joint Genome Institute (JGI) 3300021993 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Acidic Artesian spring Sediment hot spring sediment 34.9956 -98.6889 379763 417 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300041309 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.L4 DOE Joint Genome Institute (JGI) 3300041309 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 878751 971 1 0 1 0 SRX9646395 Unrestricted 0.0 single_particle_sort 3300023324 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.I14 DOE Joint Genome Institute (JGI) 3300023324 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 375672 389 0 0 0 0 SRX4549225 Unrestricted 0.0 single_particle_sort 3300036054 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_C22 DOE Joint Genome Institute (JGI) 3300036054 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 150257 135 0 0 0 0 SRX10045876 Unrestricted 0.0 single_particle_sort 3300034472 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.J20 DOE Joint Genome Institute (JGI) 3300034472 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 448295 509 0 0 0 0 SRX8389587 Unrestricted 0.0 single_particle_sort 3300050764 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_M9_SVS DOE Joint Genome Institute (JGI) 3300050764 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 38085 68 0 0 0 0 Restricted 0.0 single_particle_sort 3300035952 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.M11 DOE Joint Genome Institute (JGI) 3300035952 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1621227 1707 1 0 1 0 SRX8862681 Unrestricted 0.0 single_particle_sort 3300022945 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.02.F14 DOE Joint Genome Institute (JGI) 3300022945 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 27861 33 0 0 0 0 SRX4454664 Unrestricted 0.0 single_particle_sort 3300021986 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, United States - Parcubacteria bacterium JGI MDM2 ZSSED05-2-D11 DOE Joint Genome Institute (JGI) 3300021986 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Acidic Artesian spring Sediment hot spring sediment 34.9956 -98.6889 257299 317 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300014482 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.I17 DOE Joint Genome Institute (JGI) 3300014482 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1740470 1998 1 0 1 0 SRX3367201 Unrestricted 0.0 single_particle_sort 3300021777 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.I17 DOE Joint Genome Institute (JGI) 3300021777 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 897663 989 0 0 0 0 SRX4009978 Unrestricted 0.0 single_particle_sort 3300019966 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-C17 DOE Joint Genome Institute (JGI) 3300019966 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 405046 462 1 0 0 0 SRX4653712 Unrestricted 0.0 single_particle_sort 3300035842 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0815.Sybr.01.N11 DOE Joint Genome Institute (JGI) 3300035842 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 151636 189 0 0 0 0 SRX8894645 Unrestricted 0.0 single_particle_sort 3300050900 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_J16_SVS DOE Joint Genome Institute (JGI) 3300050900 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 31321 53 0 0 0 0 Restricted 0.0 single_particle_sort 3300019570 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-J17 DOE Joint Genome Institute (JGI) 3300019570 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 38331 55 0 0 0 0 SRX3562470 Unrestricted 0.0 single_particle_sort 3300016408 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown archaeum SCGC_AG-582-E04 DOE Joint Genome Institute (JGI) 3300016408 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 890396 1046 0 0 0 0 SRX3580212 Unrestricted 0.0 single_particle_sort 3300049972 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_M21_SVS DOE Joint Genome Institute (JGI) 3300049972 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 88130 112 0 0 0 0 Restricted 0.0 single_particle_sort 3300015411 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Omnitrophica bacterium SCGC_AG-128-M18 DOE Joint Genome Institute (JGI) 3300015411 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 988288 997 0 0 0 0 SRX3577084 Unrestricted 0.0 single_particle_sort 3300035916 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_I11 DOE Joint Genome Institute (JGI) 3300035916 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 25988 26 0 0 0 0 SRX10076457 Unrestricted 0.0 single_particle_sort 3300033228 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.D17 DOE Joint Genome Institute (JGI) 3300033228 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 345306 407 0 0 0 0 SRX7630253 Unrestricted 0.0 single_particle_sort 3300015717 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown bacterium SCGC_AG-657-J10 DOE Joint Genome Institute (JGI) 3300015717 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 168232 169 0 0 0 0 SRX3601374 Unrestricted 0.0 single_particle_sort 3300041218 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.L13 DOE Joint Genome Institute (JGI) 3300041218 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2121037 2169 0 0 1 0 SRX9652918 Unrestricted 0.0 single_particle_sort 3300036072 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_D10 DOE Joint Genome Institute (JGI) 3300036072 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 59664 63 0 0 0 0 SRX10046098 Unrestricted 0.0 single_particle_sort 3300041292 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.I10 DOE Joint Genome Institute (JGI) 3300041292 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1687726 1776 1 0 1 0 SRX9655001 Unrestricted 0.0 single_particle_sort 3300018366 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_C13 DOE Joint Genome Institute (JGI) 3300018366 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1806050 1780 0 0 0 0 SRX4649174 Unrestricted 0.0 single_particle_sort 3300016182 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Microgenometes bacterium SCGC_AG-274-C14 DOE Joint Genome Institute (JGI) 3300016182 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 662644 711 1 0 1 0 SRX3578240 Unrestricted 0.0 single_particle_sort 3300015507 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - OP2 bacterium JGI GBS_9_N15 DOE Joint Genome Institute (JGI) 3300015507 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Near-boiling (>90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 332947 373 1 0 0 0 SRX4062649 Unrestricted 0.0 single_particle_sort 3300022081 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - Candidate_division_AC1_(TA06)_bacterium_AG-188-O06 DOE Joint Genome Institute (JGI) 3300022081 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater, Deep subsurface Drilled well/Borehole groundwater -28.317 27.772 604457 630 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300050848 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_K2_SVS DOE Joint Genome Institute (JGI) 3300050848 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 87909 134 0 0 0 0 Restricted 0.0 single_particle_sort 3300035974 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.I15 DOE Joint Genome Institute (JGI) 3300035974 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 894520 934 0 0 0 0 SRX8854049 Unrestricted 0.0 single_particle_sort 3300016450 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Omnitrophica bacterium SCGC_AG-574-F11 DOE Joint Genome Institute (JGI) 3300016450 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 1332052 1384 1 0 1 0 SRX3578829 Unrestricted 0.0 single_particle_sort 3300016082 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-K04 DOE Joint Genome Institute (JGI) 3300016082 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 482000 562 1 0 1 0 SRX3540859 Unrestricted 0.0 single_particle_sort 3300015984 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-B21 DOE Joint Genome Institute (JGI) 3300015984 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 380506 453 0 0 0 0 SRX3542751 Unrestricted 0.0 single_particle_sort 3300050958 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_D17_SVS DOE Joint Genome Institute (JGI) 3300050958 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 84420 110 0 0 0 0 Restricted 0.0 single_particle_sort 3300033347 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.M6 DOE Joint Genome Institute (JGI) 3300033347 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 169603 204 1 0 1 0 SRX7630488 Unrestricted 0.0 single_particle_sort 3300049954 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_I6_SVS DOE Joint Genome Institute (JGI) 3300049954 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 21156 22 0 0 0 0 Restricted 0.0 single_particle_sort 3300019794 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-K12 DOE Joint Genome Institute (JGI) 3300019794 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 128075 147 0 0 0 0 SRX4663336 Unrestricted 0.0 single_particle_sort 3300051126 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_O22_SVS DOE Joint Genome Institute (JGI) 3300051126 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 39222 37 0 0 0 0 Restricted 0.0 single_particle_sort 3300016505 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-C11 DOE Joint Genome Institute (JGI) 3300016505 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 336290 372 0 0 0 0 SRX3577121 Unrestricted 0.0 single_particle_sort 3300036740 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.N12.redo DOE Joint Genome Institute (JGI) 3300036740 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 1260536 1414 1 0 1 0 SRX8909108 Unrestricted 0.0 single_particle_sort 3300050996 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 173_L22_SVS DOE Joint Genome Institute (JGI) 3300050996 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 38014 38 0 0 0 0 Restricted 0.0 single_particle_sort 3300037975 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.C12 DOE Joint Genome Institute (JGI) 3300037975 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 31003 44 0 0 0 0 SRX9411503 Unrestricted 0.0 single_particle_sort 3300024599 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-C07 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024599 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 38678 41 0 0 0 0 0.0 single_particle_sort 3300033646 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_O8 DOE Joint Genome Institute (JGI) 3300033646 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 17028 16 0 0 0 0 SRX7528839 Unrestricted 0.0 single_particle_sort 3300038208 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.H12 DOE Joint Genome Institute (JGI) 3300038208 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 484626 665 0 0 0 0 SRX9411022 Unrestricted 0.0 single_particle_sort 3300035280 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_G11 DOE Joint Genome Institute (JGI) 3300035280 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 29165 25 0 0 0 0 SRX9539389 Unrestricted 0.0 single_particle_sort 3300015131 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - unknown bacterium SCGC_AG-290-J10 DOE Joint Genome Institute (JGI) 3300015131 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 493192 597 0 0 0 0 SRX3578739 Unrestricted 0.0 single_particle_sort 3300033873 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.I10 DOE Joint Genome Institute (JGI) 3300033873 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 446983 537 0 0 0 0 SRX7626295 Unrestricted 0.0 single_particle_sort 3300033956 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.F14 DOE Joint Genome Institute (JGI) 3300033956 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 1006392 921 1 0 1 0 SRX7630361 Unrestricted 0.0 single_particle_sort 3300016350 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS8_B4 DOE Joint Genome Institute (JGI) 3300016350 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 633078 841 0 0 0 0 SRX4066383 Unrestricted 0.0 single_particle_sort 3300050983 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_O22_SVS DOE Joint Genome Institute (JGI) 3300050983 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 80664 116 0 0 0 0 Restricted 0.0 single_particle_sort 3300033846 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.C5 DOE Joint Genome Institute (JGI) 3300033846 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 457502 526 0 0 0 0 SRX7626144 Unrestricted 0.0 single_particle_sort 3300033673 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P4_N6 DOE Joint Genome Institute (JGI) 3300033673 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 6819 8 0 0 0 0 SRX7531019 Unrestricted 0.0 single_particle_sort 3300015031 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.M11 DOE Joint Genome Institute (JGI) 3300015031 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 385387 479 1 0 1 0 Restricted 0.0 single_particle_sort 3300021799 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.K16 DOE Joint Genome Institute (JGI) 3300021799 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 541655 613 0 0 0 0 SRX3989966 Unrestricted 0.0 single_particle_sort 3300016552 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-L19 DOE Joint Genome Institute (JGI) 3300016552 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 1241073 1187 0 0 0 0 SRX3577108 Unrestricted 0.0 single_particle_sort 3300019454 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent microbial mat, Guaymas Basin, Mexico - 4F_dil_4869_18_07 DOE Joint Genome Institute (JGI) 3300019454 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.001 -110.5998 25357591 27739 8 0 9 0 SRX3973901 Unrestricted 0.0 single_particle_sort 3300038039 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.05.H4 DOE Joint Genome Institute (JGI) 3300038039 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 26388 41 0 0 0 0 SRX9411216 Unrestricted 0.0 single_particle_sort 3300023340 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.E14 DOE Joint Genome Institute (JGI) 3300023340 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 837622 886 0 0 1 0 SRX4519762 Unrestricted 0.0 single_particle_sort 3300015969 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown archaeum SCGC_AG-582-C09 DOE Joint Genome Institute (JGI) 3300015969 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 317516 436 0 0 1 0 SRX3579946 Unrestricted 0.0 single_particle_sort 3300033912 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.J17 DOE Joint Genome Institute (JGI) 3300033912 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 130578 174 1 0 1 0 SRX7626536 Unrestricted 0.0 single_particle_sort 3300023639 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subterranean lake water in Wind Cave National Park, South Dakota, United States - Uncultured microbe JGI WindCv.32117.SYBR.01.I6 DOE Joint Genome Institute (JGI) 3300023639 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Subterranean lake Deep subsurface Unclassified freshwater 43.556 -103.478 95794 138 1 0 0 0 SRX4415712 Unrestricted 0.0 single_particle_sort 3300016161 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG-578-B08 DOE Joint Genome Institute (JGI) 3300016161 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 546604 675 1 0 1 0 SRX3579173 Unrestricted 0.0 single_particle_sort 3300016219 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Parcubacteria bacterium SCGC_AG-278-I21 DOE Joint Genome Institute (JGI) 3300016219 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 343495 414 0 0 0 0 SRX3578388 Unrestricted 0.0 single_particle_sort 3300038139 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.N5 DOE Joint Genome Institute (JGI) 3300038139 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 1254229 1316 1 0 1 0 SRX9411760 Unrestricted 0.0 single_particle_sort 3300016061 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-H13 DOE Joint Genome Institute (JGI) 3300016061 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 433970 545 1 0 0 0 SRX3563398 Unrestricted 0.0 single_particle_sort 3300033447 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.G9 DOE Joint Genome Institute (JGI) 3300033447 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 67301 65 0 0 0 0 SRX7630346 Unrestricted 0.0 single_particle_sort 3300016516 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-N18 DOE Joint Genome Institute (JGI) 3300016516 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 439088 473 0 0 0 0 SRX3784735 Unrestricted 0.0 single_particle_sort 3300032716 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.K11 DOE Joint Genome Institute (JGI) 3300032716 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 543215 686 0 0 0 0 SRX6431209 Unrestricted 0.0 single_particle_sort 3300023839 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.I6 DOE Joint Genome Institute (JGI) 3300023839 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 626823 620 0 0 0 0 SRX4549614 Unrestricted 0.0 single_particle_sort 3300038232 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.F9 DOE Joint Genome Institute (JGI) 3300038232 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 485075 686 0 0 0 0 SRX9411071 Unrestricted 0.0 single_particle_sort 3300041288 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.1.I17 DOE Joint Genome Institute (JGI) 3300041288 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2607507 2465 0 0 0 0 SRX9654849 Unrestricted 0.0 single_particle_sort 3300033961 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.D15 DOE Joint Genome Institute (JGI) 3300033961 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 768973 844 1 0 1 0 SRX7630363 Unrestricted 0.0 single_particle_sort 3300050920 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-G15 DOE Joint Genome Institute (JGI) 3300050920 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 2703548 2577 0 0 1 0 Restricted 0.0 single_particle_sort 3300022269 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - unknown_bacterium_SCGC_AH-147-P23 Bigelow Laboratory for Ocean Sciences 3300022269 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 496632 564 0 0 0 0 0.0 single_particle_sort 3300016112 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-F15 DOE Joint Genome Institute (JGI) 3300016112 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 498851 601 0 0 0 0 SRX3580199 Unrestricted 0.0 single_particle_sort 3300032353 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.D4 DOE Joint Genome Institute (JGI) 3300032353 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 791027 901 0 0 0 0 SRX6433316 Unrestricted 0.0 single_particle_sort 3300016198 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-F14 DOE Joint Genome Institute (JGI) 3300016198 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 194976 244 0 0 0 0 SRX3562913 Unrestricted 0.0 single_particle_sort 3300019545 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-F06 DOE Joint Genome Institute (JGI) 3300019545 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 24917 35 0 0 0 0 SRX3560306 Unrestricted 0.0 single_particle_sort 3300016264 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown archaeum SCGC_AG-278-A14 DOE Joint Genome Institute (JGI) 3300016264 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 511470 651 0 0 0 0 SRX3578343 Unrestricted 0.0 single_particle_sort 3300023146 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.D12 DOE Joint Genome Institute (JGI) 3300023146 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1099461 1117 1 0 2 0 SRX4510573 Unrestricted 0.0 single_particle_sort 3300022011 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - Acetothermia bacterium JGI MDM2 NGM80-2-H05 DOE Joint Genome Institute (JGI) 3300022011 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 526864 617 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300015749 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-3-H06 DOE Joint Genome Institute (JGI) 3300015749 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 154348 192 0 0 0 0 SRX3553143 Unrestricted 0.0 single_particle_sort 3300016428 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - NC10_bacterium_SCGC_AG-636-I13 DOE Joint Genome Institute (JGI) 3300016428 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Sediment Freshwater Unclassified Freshwater sediment 53.7598 107.9791 7.32 1094901 1164 1 0 1 0 SRX3784387 Unrestricted 0.0 single_particle_sort 3300023578 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.F15 DOE Joint Genome Institute (JGI) 3300023578 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 116158 142 0 0 0 0 SRX4547912 Unrestricted 0.0 single_particle_sort 3300016593 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Aminicenantes_bacterium_SCGC_AG-636-L09 DOE Joint Genome Institute (JGI) 3300016593 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 2059161 2051 0 0 0 0 SRX3784471 Unrestricted 0.0 single_particle_sort 3300016098 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Microgenometes_bacterium_SCGC_AG-516-N21 DOE Joint Genome Institute (JGI) 3300016098 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Groundwater -28.24 26.8 8.55 541069 576 1 0 0 0 SRX3784074 Unrestricted 0.0 single_particle_sort 3300016012 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in well PM-3-1, Nye County Groundwater Evaluation Oasis Valley, Nevada, USA - unknown_archaeum_SCGC_AG-293-K09 DOE Joint Genome Institute (JGI) 3300016012 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole Groundwater 36.96 -116.72 7.18 481705 481 0 0 0 0 SRX3781719 Unrestricted 0.0 single_particle_sort 3300041645 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.N20 DOE Joint Genome Institute (JGI) 3300041645 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1579924 1501 1 0 1 0 SRX14836474 Unrestricted 0.0 single_particle_sort 3300033208 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.K16 DOE Joint Genome Institute (JGI) 3300033208 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 625560 581 0 0 0 0 SRX7629317 Unrestricted 0.0 single_particle_sort 3300018451 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_E17 DOE Joint Genome Institute (JGI) 3300018451 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1010959 1017 0 0 0 0 SRX4651081 Unrestricted 0.0 single_particle_sort 3300018397 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_C5 DOE Joint Genome Institute (JGI) 3300018397 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 2296986 2187 1 0 2 0 SRX4648680 Unrestricted 0.0 single_particle_sort 3300032488 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.H5 DOE Joint Genome Institute (JGI) 3300032488 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 136544 166 0 0 1 0 SRX6430698 Unrestricted 0.0 single_particle_sort 3300022111 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.H22 DOE Joint Genome Institute (JGI) 3300022111 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 2109413 2139 0 0 0 0 SRX3998406 Unrestricted 0.0 single_particle_sort 3300015914 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-C21 DOE Joint Genome Institute (JGI) 3300015914 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 278518 369 0 0 1 0 SRX3542760 Unrestricted 0.0 single_particle_sort 3300041329 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.K6 DOE Joint Genome Institute (JGI) 3300041329 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 164696 167 0 0 0 0 SRX9646875 Unrestricted 0.0 single_particle_sort 3300016156 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-H05 DOE Joint Genome Institute (JGI) 3300016156 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 554726 663 0 0 1 0 SRX3560700 Unrestricted 0.0 single_particle_sort 3300071237 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_WGAX_F10_scBac_plate.C DOE Joint Genome Institute (JGI) 3300071237 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 1761196 1927 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300050967 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_J22_SVS DOE Joint Genome Institute (JGI) 3300050967 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 108087 139 0 0 0 0 Restricted 0.0 single_particle_sort 3300015234 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - unknown archaeum SCGC_AG-290-N15 DOE Joint Genome Institute (JGI) 3300015234 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 726580 823 1 0 1 0 SRX3578749 Unrestricted 0.0 single_particle_sort 3300032662 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.G14 DOE Joint Genome Institute (JGI) 3300032662 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 431426 521 0 0 0 0 SRX6430268 Unrestricted 0.0 single_particle_sort 3300016056 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-F14 DOE Joint Genome Institute (JGI) 3300016056 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 449242 538 1 0 1 0 SRX3560684 Unrestricted 0.0 single_particle_sort 3300014989 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-2.L17 DOE Joint Genome Institute (JGI) 3300014989 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 193470 227 1 0 1 0 Restricted 0.0 single_particle_sort 3300071265 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_WGAX_H12_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071265 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 339441 424 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300050935 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-P09 DOE Joint Genome Institute (JGI) 3300050935 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 1349869 1331 0 0 0 0 Restricted 0.0 single_particle_sort 3300022970 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - GAL15 bacterium JGI MDM2 DC4-2-M5 DOE Joint Genome Institute (JGI) 3300022970 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 570911 642 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300018127 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - uncultured microorganism JGI MDM2 ZSSED05-1-N14 DOE Joint Genome Institute (JGI) 3300018127 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 362326 440 1 0 0 0 SRX3917496 Unrestricted 0.0 single_particle_sort 3300035925 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.E18 DOE Joint Genome Institute (JGI) 3300035925 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 817360 910 1 0 1 0 SRX8862365 Unrestricted 0.0 single_particle_sort 3300019979 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-H21 DOE Joint Genome Institute (JGI) 3300019979 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 533086 643 0 0 1 0 SRX4656028 Unrestricted 0.0 single_particle_sort 3300016621 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Latescibacteria_bacterium_SCGC_AG-636-I15 DOE Joint Genome Institute (JGI) 3300016621 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 3061794 2757 1 0 1 0 SRX3784583 Unrestricted 0.0 single_particle_sort 3300032388 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.N21 DOE Joint Genome Institute (JGI) 3300032388 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 866184 1300 0 0 0 0 SRX6655890 Unrestricted 0.0 single_particle_sort 3300018351 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Spirochaetes_bacterium_SCGC_AG-650-L04 DOE Joint Genome Institute (JGI) 3300018351 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1531653 1551 0 0 0 0 SRX3981900 Unrestricted 0.0 single_particle_sort 3300041253 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.G12 DOE Joint Genome Institute (JGI) 3300041253 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 343078754 724910 357 28 935 711 SRX9651696 Unrestricted 0.0 single_particle_sort 3300016328 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Parcubacteria_bacterium_SCGC_AG-516-D17 DOE Joint Genome Institute (JGI) 3300016328 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Groundwater -28.24 26.8 8.55 720285 786 1 0 0 0 SRX3783259 Unrestricted 0.0 single_particle_sort 3300050913 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-D16 DOE Joint Genome Institute (JGI) 3300050913 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 1453243 1542 1 0 2 0 Restricted 0.0 single_particle_sort 3300010845 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_10_SCGC_AG-138-F03 DOE Joint Genome Institute (JGI) 3300010845 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 764349 964 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300022622 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Caulobacterales bacterium JGI PCGPRD042217_11 DOE Joint Genome Institute (JGI) 3300022622 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 510231 599 1 0 1 0 SRX4414716 Unrestricted 0.0 single_particle_sort 3300032681 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.K21 DOE Joint Genome Institute (JGI) 3300032681 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 742596 816 0 0 0 0 SRX6452751 Unrestricted 0.0 single_particle_sort 3300041099 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.E5 DOE Joint Genome Institute (JGI) 3300041099 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1198395 1280 1 0 1 0 SRX9654310 Unrestricted 0.0 single_particle_sort 3300034545 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.E11 DOE Joint Genome Institute (JGI) 3300034545 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 345680 359 0 0 0 0 SRX8392460 Unrestricted 0.0 single_particle_sort 3300035799 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.L8 DOE Joint Genome Institute (JGI) 3300035799 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 553826 629 0 0 1 0 SRX8861265 Unrestricted 0.0 single_particle_sort 3300014032 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.M15 DOE Joint Genome Institute (JGI) 3300014032 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 683390 862 0 0 0 0 SRX3366715 Unrestricted 0.0 single_particle_sort 3300023921 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.F4 DOE Joint Genome Institute (JGI) 3300023921 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1038511 1078 1 0 1 0 SRX4519347 Unrestricted 0.0 single_particle_sort 3300018160 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_G20 DOE Joint Genome Institute (JGI) 3300018160 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 644082 800 0 0 0 0 SRX4648720 Unrestricted 0.0 single_particle_sort 3300050872 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_C17_SVS DOE Joint Genome Institute (JGI) 3300050872 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 104231 124 0 0 0 0 Restricted 0.0 single_particle_sort 3300016289 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-3-I08 DOE Joint Genome Institute (JGI) 3300016289 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 608710 736 0 0 1 0 SRX3554207 Unrestricted 0.0 single_particle_sort 3300041199 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.D8 DOE Joint Genome Institute (JGI) 3300041199 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 791552 798 0 0 0 0 SRX9656557 Unrestricted 0.0 single_particle_sort 3300037924 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.C10 DOE Joint Genome Institute (JGI) 3300037924 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 303058 391 0 0 0 0 SRX9410430 Unrestricted 0.0 single_particle_sort 3300036048 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_I20 DOE Joint Genome Institute (JGI) 3300036048 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 120507 151 0 0 0 0 SRX10045845 Unrestricted 0.0 single_particle_sort 3300035930 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.E13 DOE Joint Genome Institute (JGI) 3300035930 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1207822 1261 0 0 0 0 SRX8862477 Unrestricted 0.0 single_particle_sort 3300022284 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - unknown_bacterium_SCGC_AH-147-M14 Bigelow Laboratory for Ocean Sciences 3300022284 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 697121 776 0 0 1 0 0.0 single_particle_sort 3300016586 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - NC10_bacterium_SCGC_AG-636-P19 DOE Joint Genome Institute (JGI) 3300016586 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 1796621 1863 0 0 0 0 SRX3784416 Unrestricted 0.0 single_particle_sort 3300023404 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.F17 DOE Joint Genome Institute (JGI) 3300023404 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 463420 432 0 0 0 0 SRX4548979 Unrestricted 0.0 single_particle_sort 3300016247 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Parcubacteria bacterium SCGC_AG-278-A04 DOE Joint Genome Institute (JGI) 3300016247 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 522499 584 1 0 1 0 SRX3578341 Unrestricted 0.0 single_particle_sort 3300051115 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_L11_SVS DOE Joint Genome Institute (JGI) 3300051115 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 26801 36 0 0 0 0 Restricted 0.0 single_particle_sort 3300035993 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.I14 DOE Joint Genome Institute (JGI) 3300035993 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 737199 793 1 0 1 0 SRX8856231 Unrestricted 0.0 single_particle_sort 3300015462 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-I10 DOE Joint Genome Institute (JGI) 3300015462 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 152604 186 0 0 0 0 SRX3549824 Unrestricted 0.0 single_particle_sort 3300041634 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.K22 DOE Joint Genome Institute (JGI) 3300041634 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2992136 3001 1 0 1 0 SRX14835784 Unrestricted 0.0 single_particle_sort 3300023375 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.F19 DOE Joint Genome Institute (JGI) 3300023375 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 711322 822 1 0 1 0 SRX4520608 Unrestricted 0.0 single_particle_sort 3300014398 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.M05 DOE Joint Genome Institute (JGI) 3300014398 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 352843 484 0 0 1 0 SRX3366682 Unrestricted 0.0 single_particle_sort 3300019951 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-C9 DOE Joint Genome Institute (JGI) 3300019951 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 191836 218 0 0 0 0 SRX4653733 Unrestricted 0.0 single_particle_sort 3300051015 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_N5_SVS DOE Joint Genome Institute (JGI) 3300051015 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 42966 58 0 0 0 0 Restricted 0.0 single_particle_sort 3300049948 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_H10_SVS DOE Joint Genome Institute (JGI) 3300049948 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 19853 43 0 0 0 0 Restricted 0.0 single_particle_sort 3300019641 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-J14 DOE Joint Genome Institute (JGI) 3300019641 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 83956 120 0 0 0 0 SRX3561059 Unrestricted 0.0 single_particle_sort 3300019534 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-G20 DOE Joint Genome Institute (JGI) 3300019534 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 20429 27 0 0 0 0 SRX3560694 Unrestricted 0.0 single_particle_sort 3300018379 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_K22 DOE Joint Genome Institute (JGI) 3300018379 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1965124 1923 1 0 1 0 SRX4650364 Unrestricted 0.0 single_particle_sort 3300050944 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-956-I03 DOE Joint Genome Institute (JGI) 3300050944 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1197303 -42.124435 529936 641 1 0 1 0 Restricted 0.0 single_particle_sort 3300016432 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Omnitrophica bacterium SCGC_AG-574-F13 DOE Joint Genome Institute (JGI) 3300016432 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 1214115 1174 1 0 1 0 SRX3578832 Unrestricted 0.0 single_particle_sort 3300035878 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.D6 DOE Joint Genome Institute (JGI) 3300035878 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 358965 373 0 0 0 0 SRX8857306 Unrestricted 0.0 single_particle_sort 3300038228 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.I16 DOE Joint Genome Institute (JGI) 3300038228 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 706619 808 1 0 1 0 SRX9411078 Unrestricted 0.0 single_particle_sort 3300015381 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - unknown archaeum SCGC_AG-128-K05 DOE Joint Genome Institute (JGI) 3300015381 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 345915 480 1 0 1 0 SRX3577033 Unrestricted 0.0 single_particle_sort 3300015888 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-G15 DOE Joint Genome Institute (JGI) 3300015888 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 223862 298 0 0 0 0 SRX3540195 Unrestricted 0.0 single_particle_sort 3300050854 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_L7_SVS DOE Joint Genome Institute (JGI) 3300050854 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 70275 108 0 0 0 0 Restricted 0.0 single_particle_sort 3300015560 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-K05 DOE Joint Genome Institute (JGI) 3300015560 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 627469 694 0 0 1 0 SRX3549991 Unrestricted 0.0 single_particle_sort 3300032585 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.D11 DOE Joint Genome Institute (JGI) 3300032585 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 530204 693 1 0 1 0 SRX6452325 Unrestricted 0.0 single_particle_sort 3300010834 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_46_SCGC_AG-138-P08 DOE Joint Genome Institute (JGI) 3300010834 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 698065 777 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300037940 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.H21 DOE Joint Genome Institute (JGI) 3300037940 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 97733 120 0 0 0 0 SRX9410601 Unrestricted 0.0 single_particle_sort 3300023475 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.K17 DOE Joint Genome Institute (JGI) 3300023475 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 1345444 1438 1 0 1 0 SRX4548451 Unrestricted 0.0 single_particle_sort 3300016525 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - Omnitrophica bacterium SCGC_AG-188-B14 DOE Joint Genome Institute (JGI) 3300016525 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 557189 571 0 0 0 0 SRX3577109 Unrestricted 0.0 single_particle_sort 3300034746 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.2.D11 DOE Joint Genome Institute (JGI) 3300034746 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 2201096 2318 1 0 1 0 SRX8390281 Unrestricted 0.0 single_particle_sort 3300014412 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.H15 DOE Joint Genome Institute (JGI) 3300014412 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 565420 720 0 0 0 0 SRX3364223 Unrestricted 0.0 single_particle_sort 3300033319 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.E8 DOE Joint Genome Institute (JGI) 3300033319 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 169623 149 0 0 0 0 SRX7630532 Unrestricted 0.0 single_particle_sort 3300051006 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_A2_SVS DOE Joint Genome Institute (JGI) 3300051006 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 52674 95 0 0 0 0 Restricted 0.0 single_particle_sort 3300019448 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent microbial mat, Guaymas Basin, Mexico - 6AG_4869_18_01 DOE Joint Genome Institute (JGI) 3300019448 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.001 -110.5998 9467632 11561 3 0 5 0 SRX3974426 Unrestricted 0.0 single_particle_sort 3300015527 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-N10 DOE Joint Genome Institute (JGI) 3300015527 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 389034 462 1 0 1 0 SRX3560359 Unrestricted 0.0 single_particle_sort 3300015653 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from unchlorinated drinking water from Apeldoorn WTP, Netherlands - VDW.4.2014 0529 MDM2 VDW1 p4 pyro.J10.double-seq DOE Joint Genome Institute (JGI) 3300015653 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Drinking water Freshwater Unchlorinated Freshwater 52.2278 5.919 739388 820 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033250 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.G22 DOE Joint Genome Institute (JGI) 3300033250 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 49072 46 0 0 0 0 SRX7630663 Unrestricted 0.0 single_particle_sort 3300051133 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_P20_SVS DOE Joint Genome Institute (JGI) 3300051133 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 121019 115 0 0 0 0 Restricted 0.0 single_particle_sort 3300015481 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-L15 DOE Joint Genome Institute (JGI) 3300015481 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 213689 254 0 0 0 0 SRX3560353 Unrestricted 0.0 single_particle_sort 3300015943 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-L05 DOE Joint Genome Institute (JGI) 3300015943 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 331980 406 0 0 0 0 SRX3563016 Unrestricted 0.0 single_particle_sort 3300035777 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.F6 DOE Joint Genome Institute (JGI) 3300035777 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 364887 407 0 0 1 0 SRX8858104 Unrestricted 0.0 single_particle_sort 3300016530 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-J21 DOE Joint Genome Institute (JGI) 3300016530 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 622954 632 1 0 0 0 SRX3578192 Unrestricted 0.0 single_particle_sort 3300035986 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.G10 DOE Joint Genome Institute (JGI) 3300035986 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 1281172 1352 0 0 0 0 SRX8855394 Unrestricted 0.0 single_particle_sort 3300022638 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Sphingomonadales bacterium JGI PCGPRD042217_22 DOE Joint Genome Institute (JGI) 3300022638 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 785276 1170 1 0 0 0 SRX4415197 Unrestricted 0.0 single_particle_sort 3300024739 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-J07 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024739 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 126728 158 0 0 0 0 0.0 single_particle_sort 3300014456 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.H11 DOE Joint Genome Institute (JGI) 3300014456 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1151136 1447 1 0 0 0 SRX3364216 Unrestricted 0.0 single_particle_sort 3300021642 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.I12 DOE Joint Genome Institute (JGI) 3300021642 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 94170 94 0 0 0 0 SRX4009654 Unrestricted 0.0 single_particle_sort 3300015853 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-582-G22 DOE Joint Genome Institute (JGI) 3300015853 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 163009 194 1 0 0 0 SRX3580213 Unrestricted 0.0 single_particle_sort 3300016332 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Microgenomates bacterium SCGC_AG-278-F04 DOE Joint Genome Institute (JGI) 3300016332 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 670002 797 1 0 0 0 SRX3578362 Unrestricted 0.0 single_particle_sort 3300035471 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_L14 DOE Joint Genome Institute (JGI) 3300035471 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 86307 123 0 0 0 0 SRX9539993 Unrestricted 0.0 single_particle_sort 3300041177 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.C20 DOE Joint Genome Institute (JGI) 3300041177 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1230875 1313 0 0 0 0 SRX9661021 Unrestricted 0.0 single_particle_sort 3300015787 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-D06 DOE Joint Genome Institute (JGI) 3300015787 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 177474 245 0 0 0 0 SRX3563239 Unrestricted 0.0 single_particle_sort 3300034534 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P9_C18 DOE Joint Genome Institute (JGI) 3300034534 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 9461 13 0 0 0 0 SRX8136695 Unrestricted 0.0 single_particle_sort 3300015976 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-H21 DOE Joint Genome Institute (JGI) 3300015976 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 382610 443 0 0 0 0 SRX3563620 Unrestricted 0.0 single_particle_sort 3300035754 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.I20 DOE Joint Genome Institute (JGI) 3300035754 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1310143 1391 0 0 0 0 SRX8857604 Unrestricted 0.0 single_particle_sort 3300071232 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Soil_PTA_B05_scBac_plate.C DOE Joint Genome Institute (JGI) 3300071232 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.877938 -122.086632 6017107 6468 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300050962 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_I3_SVS DOE Joint Genome Institute (JGI) 3300050962 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 39465 42 0 0 0 0 Restricted 0.0 single_particle_sort 3300010724 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.J12 DOE Joint Genome Institute (JGI) 3300010724 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 54105 70 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035819 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0813.Sybr.01.H21 DOE Joint Genome Institute (JGI) 3300035819 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 571896 623 1 0 1 0 SRX8894086 Unrestricted 0.0 single_particle_sort 3300032635 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.H9 DOE Joint Genome Institute (JGI) 3300032635 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 217869 222 0 0 0 0 SRX6431008 Unrestricted 0.0 single_particle_sort 3300015015 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.K12 DOE Joint Genome Institute (JGI) 3300015015 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 307205 382 1 0 1 0 Restricted 0.0 single_particle_sort 3300041154 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.C14 DOE Joint Genome Institute (JGI) 3300041154 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2769662 2773 1 0 1 0 SRX9651526 Unrestricted 0.0 single_particle_sort 3300050778 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_B2_SVS DOE Joint Genome Institute (JGI) 3300050778 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 145730 207 0 0 0 0 Restricted 0.0 single_particle_sort 3300015115 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - Parcubacteria bacterium SCGC_AG-290-G16 DOE Joint Genome Institute (JGI) 3300015115 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 375587 440 0 0 1 0 SRX3578560 Unrestricted 0.0 single_particle_sort 3300048238 *Microbiome Permanent Draft Groundwater microbial communities from wells in Ash Sharqiyah North Governorate, Oman Sorted cell/s from groundwater from well in Ash Sharqiyah North Governorate, Oman - Uncultured microbe JGI_Spietz.WAB188.SY45.01.J21 DOE Joint Genome Institute (JGI) 3300048238 Metagenome - Single Particle Sort spades v. 3.15.2 released based on JGI ITS No Yes rachel.spietz@montana.edu Rachel Spietz No Environmental Aquatic Groundwater Freshwater Unclassified groundwater 22.8673 58.668 483330 495 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300032667 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.J8 DOE Joint Genome Institute (JGI) 3300032667 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 372960 410 1 0 0 0 SRX6431297 Unrestricted 0.0 single_particle_sort 3300015444 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-E09 DOE Joint Genome Institute (JGI) 3300015444 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 107813 145 0 0 1 0 SRX3560067 Unrestricted 0.0 single_particle_sort 3300019669 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown archaeum SCGC_AG-657-A19 DOE Joint Genome Institute (JGI) 3300019669 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 231719 281 0 0 0 0 SRX3903417 Unrestricted 0.0 single_particle_sort 3300033478 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.L9 DOE Joint Genome Institute (JGI) 3300033478 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 1266465 1297 1 0 1 0 SRX7630354 Unrestricted 0.0 single_particle_sort 3300038237 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.L4 DOE Joint Genome Institute (JGI) 3300038237 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 305679 501 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300016117 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_J18 DOE Joint Genome Institute (JGI) 3300016117 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 620226 609 0 0 0 0 SRX4065361 Unrestricted 0.0 single_particle_sort 3300024629 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-A13 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024629 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 52237 62 0 0 0 0 0.0 single_particle_sort 3300021689 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.D15 DOE Joint Genome Institute (JGI) 3300021689 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 315893 352 0 0 0 0 SRX4009967 Unrestricted 0.0 single_particle_sort 3300022083 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.H12 DOE Joint Genome Institute (JGI) 3300022083 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 869771 992 0 0 0 0 SRX3998088 Unrestricted 0.0 single_particle_sort 3300032620 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.H16 DOE Joint Genome Institute (JGI) 3300032620 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 930636 808 1 0 1 0 SRX6429295 Unrestricted 0.0 single_particle_sort 3300038265 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.05.E8 DOE Joint Genome Institute (JGI) 3300038265 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 167313 272 0 0 0 0 SRX9411219 Unrestricted 0.0 single_particle_sort 3300041266 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.2.E7 DOE Joint Genome Institute (JGI) 3300041266 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 877786 954 0 0 0 0 SRX9666475 Unrestricted 0.0 single_particle_sort 3300016017 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in well PM-3-1, Nye County Groundwater Evaluation Oasis Valley, Nevada, USA - unknown_bacterium_SCGC_AG-293-O03 DOE Joint Genome Institute (JGI) 3300016017 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole Groundwater 36.96 -116.72 7.18 401040 490 0 0 0 0 SRX3782057 Unrestricted 0.0 single_particle_sort 3300018318 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-B03 DOE Joint Genome Institute (JGI) 3300018318 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1456689 1282 0 0 1 0 SRX3978405 Unrestricted 0.0 single_particle_sort 3300018392 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_G4 DOE Joint Genome Institute (JGI) 3300018392 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 2307540 2240 0 0 0 0 SRX4649708 Unrestricted 0.0 single_particle_sort 3300024829 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-B15 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024829 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 274936 364 0 0 0 0 0.0 single_particle_sort 3300016568 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - NC10_bacterium_SCGC_AG-636-C10 DOE Joint Genome Institute (JGI) 3300016568 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Sediment Freshwater Unclassified Freshwater sediment 53.7598 107.9791 7.32 1595221 1662 1 0 1 0 SRX3784421 Unrestricted 0.0 single_particle_sort 3300033776 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P4_B5 DOE Joint Genome Institute (JGI) 3300033776 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 9474 16 0 0 0 0 SRX7525376 Unrestricted 0.0 single_particle_sort 3300016063 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-I17 DOE Joint Genome Institute (JGI) 3300016063 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 408955 545 0 0 0 0 SRX3562944 Unrestricted 0.0 single_particle_sort 3300015006 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.N7 DOE Joint Genome Institute (JGI) 3300015006 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 278250 340 1 0 1 0 Restricted 0.0 single_particle_sort 3300050677 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_L14_SVS DOE Joint Genome Institute (JGI) 3300050677 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 48932 84 0 0 0 0 Restricted 0.0 single_particle_sort 3300015106 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - unknown bacterium SCGC_AG-290-O05 DOE Joint Genome Institute (JGI) 3300015106 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 328805 388 0 0 0 0 SRX3578752 Unrestricted 0.0 single_particle_sort 3300016163 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-L18 DOE Joint Genome Institute (JGI) 3300016163 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 577863 677 0 0 0 0 SRX3563023 Unrestricted 0.0 single_particle_sort 3300021664 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.J8 DOE Joint Genome Institute (JGI) 3300021664 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 182609 222 0 0 0 0 SRX4004986 Unrestricted 0.0 single_particle_sort 3300050877 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_C9_SVS DOE Joint Genome Institute (JGI) 3300050877 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 42447 58 0 0 0 0 Restricted 0.0 single_particle_sort 3300033504 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.J6 DOE Joint Genome Institute (JGI) 3300033504 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 612280 708 0 0 0 0 SRX7630272 Unrestricted 0.0 single_particle_sort 3300022096 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Atribacteria bacterium JGI MDM2 LBsed72-1-I19 DOE Joint Genome Institute (JGI) 3300022096 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment freshwater sediment 53.7598 107.9791 1267162 1363 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300019684 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG_AG-578-B09 DOE Joint Genome Institute (JGI) 3300019684 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 635837 701 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300033671 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P4_M2 DOE Joint Genome Institute (JGI) 3300033671 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 12758 17 0 0 0 0 SRX7531021 Unrestricted 0.0 single_particle_sort 3300032613 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.C20 DOE Joint Genome Institute (JGI) 3300032613 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 1410415 1363 1 0 1 0 SRX6426234 Unrestricted 0.0 single_particle_sort 3300015538 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from geothermal water in Devil's Hole, Nevada, USA - unknown archaeum SCGC_AG-122-L19 DOE Joint Genome Institute (JGI) 3300015538 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified thermal water 36.4252 -116.2914 7.5 314718 540 1 0 0 0 SRX3574082 Unrestricted 0.0 single_particle_sort 3300015033 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.C12 DOE Joint Genome Institute (JGI) 3300015033 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 387590 487 1 0 1 0 Restricted 0.0 single_particle_sort 3300018122 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-B14 DOE Joint Genome Institute (JGI) 3300018122 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 440564 408 0 0 0 0 SRX4815061 Unrestricted 0.0 single_particle_sort 3300050981 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_O15_SVS DOE Joint Genome Institute (JGI) 3300050981 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 50025 74 0 0 0 0 Restricted 0.0 single_particle_sort 3300033871 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.H9 DOE Joint Genome Institute (JGI) 3300033871 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 452264 534 0 0 0 0 SRX7626293 Unrestricted 0.0 single_particle_sort 3300015133 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - Parcubacteria bacterium SCGC_AG-290-C16 DOE Joint Genome Institute (JGI) 3300015133 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 520169 620 1 0 0 0 SRX3578546 Unrestricted 0.0 single_particle_sort 3300022627 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Rhodospirillales bacterium JGI PCGPRD042217_23 DOE Joint Genome Institute (JGI) 3300022627 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 603825 738 1 0 0 0 SRX4415196 Unrestricted 0.0 single_particle_sort 3300033378 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.L9 DOE Joint Genome Institute (JGI) 3300033378 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 383102 422 0 0 0 0 SRX7627516 Unrestricted 0.0 single_particle_sort 3300021748 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.F22 DOE Joint Genome Institute (JGI) 3300021748 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 752829 802 1 0 1 0 SRX3990003 Unrestricted 0.0 single_particle_sort 3300021991 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, United States - Parcubacteria bacterium JGI MDM2 ZSSED05-2-H17 DOE Joint Genome Institute (JGI) 3300021991 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Acidic Artesian spring Sediment hot spring sediment 34.9956 -98.6889 253007 326 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300022000 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - Acetothermia bacterium JGI MDM2 NGM80-1-L19 DOE Joint Genome Institute (JGI) 3300022000 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 386998 497 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300014463 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.I06 DOE Joint Genome Institute (JGI) 3300014463 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1284657 1550 0 0 1 0 SRX3364221 Unrestricted 0.0 single_particle_sort 3300015420 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Omnitrophica bacterium SCGC_AG-128-G07 DOE Joint Genome Institute (JGI) 3300015420 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 1354042 1276 1 0 1 0 SRX3576742 Unrestricted 0.0 single_particle_sort 3300024076 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.I9 DOE Joint Genome Institute (JGI) 3300024076 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 520788 628 1 0 1 0 SRX4500795 Unrestricted 0.0 single_particle_sort 3300016437 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in well PM-3-1, Nye County Groundwater Evaluation Oasis Valley, Nevada, USA - Thaumarchaeota_archaeum_SCGC_AG-293-C20 DOE Joint Genome Institute (JGI) 3300016437 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole Groundwater 36.96 -116.72 7.18 968504 1207 1 0 0 0 SRX3781676 Unrestricted 0.0 single_particle_sort 3300015866 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in well PM-3-1, Nye County Groundwater Evaluation Oasis Valley, Nevada, USA - Peregrinibacteria_bacterium_SCGC_AG-293-M02 DOE Joint Genome Institute (JGI) 3300015866 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole Groundwater 36.96 -116.72 7.18 205709 236 1 0 0 0 SRX3781720 Unrestricted 0.0 single_particle_sort 3300022100 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.N11 DOE Joint Genome Institute (JGI) 3300022100 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 621673 630 0 0 0 0 SRX3998342 Unrestricted 0.0 single_particle_sort 3300023936 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.F20 DOE Joint Genome Institute (JGI) 3300023936 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 1161492 1190 0 0 0 0 SRX4549239 Unrestricted 0.0 single_particle_sort 3300032644 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.H12 DOE Joint Genome Institute (JGI) 3300032644 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 350660 374 1 0 0 0 SRX6431007 Unrestricted 0.0 single_particle_sort 3300016603 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Latescibacteria_bacterium_SCGC_AG-636-B15 DOE Joint Genome Institute (JGI) 3300016603 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Sediment Freshwater Unclassified Freshwater sediment 53.7598 107.9791 7.32 2567541 2283 0 0 0 0 SRX3784662 Unrestricted 0.0 single_particle_sort 3300021104 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted archaeal cell/s from hot spring water in Nymph Lake, Yellowstone National Park, Wyoming, USA - Nanoarchaeota archaeon AD-903-P15 Oregon State University 3300021104 Metagenome - Single Particle Sort Spades v2.2.1 Manuscript to be submitted soon No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring water 44.75187 -110.7288 283077 373 0 0 0 0 0.0 single_particle_sort 3300016465 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Aminicenantes_bacterium_SCGC_AG-636-P02 DOE Joint Genome Institute (JGI) 3300016465 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Sediment Freshwater Unclassified Freshwater sediment 53.7598 107.9791 7.32 1447899 1489 1 0 1 0 SRX3784467 Unrestricted 0.0 single_particle_sort 3300015666 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Jinze hot spring sediment, Tengchong, China - JNZ.1.2014 1216 MDM2 JNZ p1 16S.M21.double-seq DOE Joint Genome Institute (JGI) 3300015666 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 25.4413 98.46 1285490 1168 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300010740 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.04.L18 DOE Joint Genome Institute (JGI) 3300010740 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 115407 145 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300033714 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P1_L4 DOE Joint Genome Institute (JGI) 3300033714 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 2691 4 0 0 0 0 SRX7525390 Unrestricted 0.0 single_particle_sort 3300033859 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.N6 DOE Joint Genome Institute (JGI) 3300033859 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 158504 193 0 0 0 0 SRX7626218 Unrestricted 0.0 single_particle_sort 3300016242 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Peregrinibacteria bacterium SCGC_AG-278-M20 DOE Joint Genome Institute (JGI) 3300016242 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 525662 555 1 0 0 0 SRX3578422 Unrestricted 0.0 single_particle_sort 3300071228 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_WGAX_C12_scBac_plate.B DOE Joint Genome Institute (JGI) 3300071228 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 1126430 1075 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300015467 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-G14 DOE Joint Genome Institute (JGI) 3300015467 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 158236 202 0 0 0 0 SRX3549743 Unrestricted 0.0 single_particle_sort 3300023519 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake lower layer water, Antarctica - Uncultured microbe JGI AceAnae.SYBR.01.D22 DOE Joint Genome Institute (JGI) 3300023519 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 580470 612 0 0 0 0 SRX4548265 Unrestricted 0.0 single_particle_sort 3300033949 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.L13 DOE Joint Genome Institute (JGI) 3300033949 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 329979 400 0 0 0 0 SRX7626283 Unrestricted 0.0 single_particle_sort 3300033659 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P1_N6 DOE Joint Genome Institute (JGI) 3300033659 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 12481 13 0 0 0 0 SRX7530068 Unrestricted 0.0 single_particle_sort 3300023903 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.E19 DOE Joint Genome Institute (JGI) 3300023903 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 858115 937 1 0 1 0 SRX4519117 Unrestricted 0.0 single_particle_sort 3300015761 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-B09 DOE Joint Genome Institute (JGI) 3300015761 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 163915 207 0 0 0 0 SRX3560452 Unrestricted 0.0 single_particle_sort 3300015435 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-I14 DOE Joint Genome Institute (JGI) 3300015435 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 83542 117 0 0 0 0 SRX3549985 Unrestricted 0.0 single_particle_sort 3300016365 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG_AG-578-C09 DOE Joint Genome Institute (JGI) 3300016365 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 734945 863 1 0 1 0 SRX3579178 Unrestricted 0.0 single_particle_sort 3300018138 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - uncultured microorganism JGI MDM2 ZSSED05-1-M10 DOE Joint Genome Institute (JGI) 3300018138 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 386610 476 2 0 0 0 SRX3917487 Unrestricted 0.0 single_particle_sort 3300035772 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.F12 DOE Joint Genome Institute (JGI) 3300035772 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 856899 934 0 0 0 0 SRX8858031 Unrestricted 0.0 single_particle_sort 3300015522 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-D13 DOE Joint Genome Institute (JGI) 3300015522 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 355977 429 0 0 0 0 SRX3549922 Unrestricted 0.0 single_particle_sort 3300050899 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_I8_SVS DOE Joint Genome Institute (JGI) 3300050899 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 112048 166 0 0 0 0 Restricted 0.0 single_particle_sort 3300016337 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - unknown bacterium SCGC_AG-188-N23 DOE Joint Genome Institute (JGI) 3300016337 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 815365 811 0 0 1 0 SRX3578226 Unrestricted 0.0 single_particle_sort 3300015782 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown bacterium SCGC_AG-657-L03 DOE Joint Genome Institute (JGI) 3300015782 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 270043 239 0 0 0 0 SRX3601672 Unrestricted 0.0 single_particle_sort 3300041172 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.1.J9 DOE Joint Genome Institute (JGI) 3300041172 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 366279 458 0 0 0 0 SRX9654888 Unrestricted 0.0 single_particle_sort 3300035968 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.I10 DOE Joint Genome Institute (JGI) 3300035968 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 2281934 2353 1 0 1 0 SRX8862709 Unrestricted 0.0 single_particle_sort 3300015413 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Fibrobacteres bacterium SCGC_AG-128-D07 DOE Joint Genome Institute (JGI) 3300015413 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 1019509 1009 1 0 1 0 SRX3574282 Unrestricted 0.0 single_particle_sort 3300021647 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.F17 DOE Joint Genome Institute (JGI) 3300021647 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 91213 113 0 0 0 0 SRX4006795 Unrestricted 0.0 single_particle_sort 3300019918 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-L13 DOE Joint Genome Institute (JGI) 3300019918 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 825901 941 2 0 1 0 SRX4663351 Unrestricted 0.0 single_particle_sort 3300019992 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-H5 DOE Joint Genome Institute (JGI) 3300019992 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 981035 1056 1 0 1 0 SRX4663276 Unrestricted 0.0 single_particle_sort 3300018209 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-F21 DOE Joint Genome Institute (JGI) 3300018209 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 452087 583 0 0 0 0 SRX3978448 Unrestricted 0.0 single_particle_sort 3300014417 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.I11 DOE Joint Genome Institute (JGI) 3300014417 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 630204 812 1 0 0 0 SRX3367202 Unrestricted 0.0 single_particle_sort 3300023401 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.K15 DOE Joint Genome Institute (JGI) 3300023401 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 511757 609 1 0 1 0 SRX4520579 Unrestricted 0.0 single_particle_sort 3300022281 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Hadesarchaea_archaeum_SCGC_AH-147-D09 Bigelow Laboratory for Ocean Sciences 3300022281 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 483905 614 1 0 1 0 0.0 single_particle_sort 3300035792 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.J6 DOE Joint Genome Institute (JGI) 3300035792 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 617630 651 0 0 0 0 SRX8859678 Unrestricted 0.0 single_particle_sort 3300019813 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-K8 DOE Joint Genome Institute (JGI) 3300019813 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 886375 880 0 0 1 0 SRX4663347 Unrestricted 0.0 single_particle_sort 3300035718 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_D15 DOE Joint Genome Institute (JGI) 3300035718 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 58021 73 0 0 0 0 SRX10045712 Unrestricted 0.0 single_particle_sort 3300037921 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.G9 DOE Joint Genome Institute (JGI) 3300037921 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 655479 819 0 0 0 0 SRX9410427 Unrestricted 0.0 single_particle_sort 3300041092 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.F5 DOE Joint Genome Institute (JGI) 3300041092 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 133999 179 0 0 0 0 SRX9654484 Unrestricted 0.0 single_particle_sort 3300036633 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.F19 DOE Joint Genome Institute (JGI) 3300036633 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 1220527 1341 0 0 2 0 SRX8060200 Unrestricted 0.0 single_particle_sort 3300034635 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.J21 DOE Joint Genome Institute (JGI) 3300034635 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 866224 906 0 0 0 0 SRX8390626 Unrestricted 0.0 single_particle_sort 3300023924 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.K8 DOE Joint Genome Institute (JGI) 3300023924 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 984151 1123 1 0 1 0 SRX4523612 Unrestricted 0.0 single_particle_sort 3300010780 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_48_SCGC_AG-138-P15 DOE Joint Genome Institute (JGI) 3300010780 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 300668 358 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300041192 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.I13 DOE Joint Genome Institute (JGI) 3300041192 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2676070 2479 1 0 1 0 SRX9654901 Unrestricted 0.0 single_particle_sort 3300019613 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-F17 DOE Joint Genome Institute (JGI) 3300019613 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 43787 88 0 0 0 0 SRX3561046 Unrestricted 0.0 single_particle_sort 3300041118 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.M11 DOE Joint Genome Institute (JGI) 3300041118 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 155666 164 1 0 0 0 SRX9654793 Unrestricted 0.0 single_particle_sort 3300049966 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_L4_SVS DOE Joint Genome Institute (JGI) 3300049966 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 54456 100 0 0 0 0 Restricted 0.0 single_particle_sort 3300016282 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown archaeum SCGC_AG-278-I06 DOE Joint Genome Institute (JGI) 3300016282 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 588878 722 1 0 1 0 SRX3578382 Unrestricted 0.0 single_particle_sort 3300050879 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_D4_SVS DOE Joint Genome Institute (JGI) 3300050879 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 21276 23 0 0 0 0 Restricted 0.0 single_particle_sort 3300051789 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 159_A4_SVS DOE Joint Genome Institute (JGI) 3300051789 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 42489 53 0 0 0 0 Restricted 0.0 single_particle_sort 3300032684 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.J19 DOE Joint Genome Institute (JGI) 3300032684 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 529784 575 0 0 0 0 SRX6452817 Unrestricted 0.0 single_particle_sort 3300034620 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.N16 DOE Joint Genome Institute (JGI) 3300034620 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1551797 1636 1 0 1 0 SRX8395076 Unrestricted 0.0 single_particle_sort 3300019972 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-C20 DOE Joint Genome Institute (JGI) 3300019972 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 410377 526 1 0 0 0 SRX4653728 Unrestricted 0.0 single_particle_sort 3300036606 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.E8 DOE Joint Genome Institute (JGI) 3300036606 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 1231811 1403 0 0 0 0 SRX8902471 Unrestricted 0.0 single_particle_sort 3300024588 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-B03 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024588 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 11972 16 0 0 0 0 0.0 single_particle_sort 3300024083 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.F15 DOE Joint Genome Institute (JGI) 3300024083 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 918625 970 1 0 1 0 SRX4521639 Unrestricted 0.0 single_particle_sort 3300021788 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.G20 DOE Joint Genome Institute (JGI) 3300021788 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 2741350 2727 0 0 0 0 SRX3990030 Unrestricted 0.0 single_particle_sort 3300024728 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-J21 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024728 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 125846 148 0 0 0 0 0.0 single_particle_sort 3300022629 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus contorta in Yosemite National Park, California, United States - Sphingobacteriales bacterium JGI PCGPRD042217_26 DOE Joint Genome Institute (JGI) 3300022629 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 1391298 1416 1 0 1 0 SRX4415245 Unrestricted 0.0 single_particle_sort 3300034466 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.N22 DOE Joint Genome Institute (JGI) 3300034466 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 340244 381 0 0 0 0 SRX8389560 Unrestricted 0.0 single_particle_sort 3300018354 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-C16 DOE Joint Genome Institute (JGI) 3300018354 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1690493 1583 0 0 0 0 SRX3981036 Unrestricted 0.0 single_particle_sort 3300016624 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from sediment in Lake Baikal, Irkutsk, Russia - Aminicenantes_bacterium_SCGC_AG-636-M20 DOE Joint Genome Institute (JGI) 3300016624 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 2910602 2825 0 0 1 0 SRX3784474 Unrestricted 0.0 single_particle_sort 3300035863 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0815.Sybr.04.N10 DOE Joint Genome Institute (JGI) 3300035863 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 707941 732 1 0 1 0 SRX8894848 Unrestricted 0.0 single_particle_sort 3300033595 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.F20 DOE Joint Genome Institute (JGI) 3300033595 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 555941 617 0 0 0 0 SRX7630454 Unrestricted 0.0 single_particle_sort 3300024660 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-O15 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024660 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 77599 93 0 0 0 0 0.0 single_particle_sort 3300035817 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States Sorted cell/s from from Lake Lanier water, Atlanta, Georgia, United States - Uncultured microbe JGI_Kostas.LL0813.Sybr.01.E13 DOE Joint Genome Institute (JGI) 3300035817 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes kostas@ce.gatech.edu Konstantinos Konstantinidis No Environmental Aquatic Lake Freshwater Unclassified freshwater 34.2611 -83.9501 1091637 1226 1 0 1 0 SRX8894065 Unrestricted 0.0 single_particle_sort 3300038008 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.K17 DOE Joint Genome Institute (JGI) 3300038008 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 1431171 1347 0 0 0 0 SRX9409781 Unrestricted 0.0 single_particle_sort 3300024096 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.M7 DOE Joint Genome Institute (JGI) 3300024096 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1265797 1190 0 0 0 0 SRX4519565 Unrestricted 0.0 single_particle_sort 3300019620 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from underground thermal water from 5P borehole, Tomsk, Russia - Microgenometes_bacterium_SCGC_AG-717-C10 DOE Joint Genome Institute (JGI) 3300019620 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole Groundwater 58.0758 82.8374 7.49-7.6 66834 92 0 0 0 0 SRX3940799 Unrestricted 0.0 single_particle_sort 3300023608 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.L10 DOE Joint Genome Institute (JGI) 3300023608 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 654337 820 1 0 1 0 SRX4548027 Unrestricted 0.0 single_particle_sort 3300041322 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.J20 DOE Joint Genome Institute (JGI) 3300041322 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 182882 173 0 0 0 0 SRX9646854 Unrestricted 0.0 single_particle_sort 3300033700 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_K19 DOE Joint Genome Institute (JGI) 3300033700 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 11846 14 0 0 0 0 SRX7525437 Unrestricted 0.0 single_particle_sort 3300015231 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - unknown bacterium SCGC_AG-290-K13 DOE Joint Genome Institute (JGI) 3300015231 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 731332 746 0 0 0 0 SRX3578734 Unrestricted 0.0 single_particle_sort 3300024196 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Pseudomonas bacterium JGI PFNR15_L13 DOE Joint Genome Institute (JGI) 3300024196 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 331310 368 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300038108 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .L18 DOE Joint Genome Institute (JGI) 3300038108 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 603327 841 0 0 0 0 SRX9411634 Unrestricted 0.0 single_particle_sort 3300019466 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-2.J20 DOE Joint Genome Institute (JGI) 3300019466 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 64229 81 1 0 1 0 Restricted 0.0 single_particle_sort 3300032669 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.C9 DOE Joint Genome Institute (JGI) 3300032669 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 380663 456 0 0 1 0 SRX6452379 Unrestricted 0.0 single_particle_sort 3300023808 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.L15 DOE Joint Genome Institute (JGI) 3300023808 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 424019 466 0 0 0 0 SRX4548076 Unrestricted 0.0 single_particle_sort 3300015742 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-H14 DOE Joint Genome Institute (JGI) 3300015742 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 96429 138 0 0 0 0 SRX3562637 Unrestricted 0.0 single_particle_sort 3300019667 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG-582-L21 DOE Joint Genome Institute (JGI) 3300019667 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 250495 266 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300022114 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.SA12.01.D7 DOE Joint Genome Institute (JGI) 3300022114 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 2345977 2164 0 0 0 0 SRX3998264 Unrestricted 0.0 single_particle_sort 3300015911 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown archaeum SCGC_AG-657-K02 DOE Joint Genome Institute (JGI) 3300015911 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 289486 364 1 0 1 0 SRX3601409 Unrestricted 0.0 single_particle_sort 3300036615 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.F11 DOE Joint Genome Institute (JGI) 3300036615 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 1262090 1452 0 0 1 0 SRX8902709 Unrestricted 0.0 single_particle_sort 3300018454 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Lentisphaerae_bacterium_SCGC_AG-650-J05 DOE Joint Genome Institute (JGI) 3300018454 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1349497 1215 1 0 1 0 SRX3981524 Unrestricted 0.0 single_particle_sort 3300021687 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.I14 DOE Joint Genome Institute (JGI) 3300021687 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 257271 299 0 0 0 0 SRX4009964 Unrestricted 0.0 single_particle_sort 3300024627 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-P21 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024627 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 51469 59 0 0 0 0 0.0 single_particle_sort 3300016119 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - unknown_bacterium_SCGC_AG-640-L19 DOE Joint Genome Institute (JGI) 3300016119 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 684533 618 0 0 0 0 SRX3784276 Unrestricted 0.0 single_particle_sort 3300022262 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Hadesarchaea_archaeum_SCGC_AH-147-G16 Bigelow Laboratory for Ocean Sciences 3300022262 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 401800 479 1 0 1 0 0.0 single_particle_sort 3300038239 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.L14 DOE Joint Genome Institute (JGI) 3300038239 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 254477 345 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300019635 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG_AG-578-A14 DOE Joint Genome Institute (JGI) 3300019635 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 89851 113 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300016261 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-H14 DOE Joint Genome Institute (JGI) 3300016261 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 533303 650 0 0 0 0 SRX3562929 Unrestricted 0.0 single_particle_sort 3300022014 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - unclassified bacterium JGI MDM2 NGM80-1-G17 DOE Joint Genome Institute (JGI) 3300022014 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 570713 601 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300024827 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-L08 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024827 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 258152 340 0 0 0 0 0.0 single_particle_sort 3300034613 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.N19 DOE Joint Genome Institute (JGI) 3300034613 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1420493 1455 1 0 1 0 SRX8394784 Unrestricted 0.0 single_particle_sort 3300021753 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.F4 DOE Joint Genome Institute (JGI) 3300021753 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 662477 678 0 0 0 0 SRX3990750 Unrestricted 0.0 single_particle_sort 3300016019 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG_AG-578-D05 DOE Joint Genome Institute (JGI) 3300016019 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 423928 492 1 0 0 0 SRX3579181 Unrestricted 0.0 single_particle_sort 3300033964 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.C16 DOE Joint Genome Institute (JGI) 3300033964 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 312373 363 1 0 0 0 SRX7630389 Unrestricted 0.0 single_particle_sort 3300010736 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.N15 DOE Joint Genome Institute (JGI) 3300010736 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 135658 126 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035474 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_J15 DOE Joint Genome Institute (JGI) 3300035474 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 30291 50 0 0 0 0 SRX9540186 Unrestricted 0.0 single_particle_sort 3300034531 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P8_G7 DOE Joint Genome Institute (JGI) 3300034531 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 6452 10 0 0 0 0 SRX8136632 Unrestricted 0.0 single_particle_sort 3300024100 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.K6 DOE Joint Genome Institute (JGI) 3300024100 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1367732 1421 1 0 1 0 SRX4519348 Unrestricted 0.0 single_particle_sort 3300033796 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P2_C5 DOE Joint Genome Institute (JGI) 3300033796 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 10475 23 0 0 0 0 SRX7525340 Unrestricted 0.0 single_particle_sort 3300015484 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-N18 DOE Joint Genome Institute (JGI) 3300015484 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 220997 259 0 0 0 0 SRX3560450 Unrestricted 0.0 single_particle_sort 3300016339 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-188-I11 DOE Joint Genome Institute (JGI) 3300016339 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 845586 820 0 0 0 0 SRX3578195 Unrestricted 0.0 single_particle_sort 3300050897 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_I18_SVS DOE Joint Genome Institute (JGI) 3300050897 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 77387 108 0 0 0 0 Restricted 0.0 single_particle_sort 3300021649 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.K9 DOE Joint Genome Institute (JGI) 3300021649 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 71434 96 0 0 0 0 SRX4009943 Unrestricted 0.0 single_particle_sort 3300033356 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.L12 DOE Joint Genome Institute (JGI) 3300033356 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 638476 658 0 0 1 0 SRX7627935 Unrestricted 0.0 single_particle_sort 3300023850 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.J14 DOE Joint Genome Institute (JGI) 3300023850 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 628280 678 0 0 0 0 SRX4525531 Unrestricted 0.0 single_particle_sort 3300024385 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.H6 DOE Joint Genome Institute (JGI) 3300024385 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 84652 112 0 0 0 0 SRX4547882 Unrestricted 0.0 single_particle_sort 3300023650 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.F19 DOE Joint Genome Institute (JGI) 3300023650 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 301522 382 0 0 0 0 SRX4547908 Unrestricted 0.0 single_particle_sort 3300010831 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_41_SCGC_AG-138-N21 DOE Joint Genome Institute (JGI) 3300010831 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 583235 763 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023940 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.L5 DOE Joint Genome Institute (JGI) 3300023940 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 1170617 1201 0 0 0 0 SRX4549803 Unrestricted 0.0 single_particle_sort 3300033312 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.I10 DOE Joint Genome Institute (JGI) 3300033312 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 1107682 1103 0 0 0 0 SRX7627675 Unrestricted 0.0 single_particle_sort 3300014419 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.L11 DOE Joint Genome Institute (JGI) 3300014419 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 773123 824 1 0 1 0 SRX3367892 Unrestricted 0.0 single_particle_sort 3300038050 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.G19 DOE Joint Genome Institute (JGI) 3300038050 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 492208 533 0 0 0 0 SRX9411374 Unrestricted 0.0 single_particle_sort 3300018207 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_B4 DOE Joint Genome Institute (JGI) 3300018207 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 562546 575 0 0 0 0 SRX4652598 Unrestricted 0.0 single_particle_sort 3300033456 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.L8 DOE Joint Genome Institute (JGI) 3300033456 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 258831 298 0 0 0 0 SRX7630347 Unrestricted 0.0 single_particle_sort 3300050851 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_L17_SVS DOE Joint Genome Institute (JGI) 3300050851 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 39618 34 0 0 0 0 Restricted 0.0 single_particle_sort 3300016439 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Omnitrophica bacterium SCGC_AG-574-F15 DOE Joint Genome Institute (JGI) 3300016439 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 1320723 1264 0 0 1 0 SRX3578830 Unrestricted 0.0 single_particle_sort 3300015384 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Parcubacteria bacterium SCGC_AG-128-G05 DOE Joint Genome Institute (JGI) 3300015384 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 438877 500 1 0 0 0 SRX3574363 Unrestricted 0.0 single_particle_sort 3300050941 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-956-F10 DOE Joint Genome Institute (JGI) 3300050941 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1197303 -42.124435 345298 405 1 0 1 0 Restricted 0.0 single_particle_sort 3300050798 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_J9_SVS DOE Joint Genome Institute (JGI) 3300050798 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 52893 42 0 0 0 0 Restricted 0.0 single_particle_sort 3300033857 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.L6 DOE Joint Genome Institute (JGI) 3300033857 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 381939 404 0 0 0 0 SRX7626215 Unrestricted 0.0 single_particle_sort 3300019531 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Leptolyngbya sp. HL7711_P1F1 JGI 000148CP-G14 DOE Joint Genome Institute (JGI) 3300019531 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 4000555 4007 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300041338 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.H13 DOE Joint Genome Institute (JGI) 3300041338 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2620265 2435 1 0 1 0 SRX9646931 Unrestricted 0.0 single_particle_sort 3300033783 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P2_O8 DOE Joint Genome Institute (JGI) 3300033783 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 24946 37 0 0 1 0 SRX7529887 Unrestricted 0.0 single_particle_sort 3300015469 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-K21 DOE Joint Genome Institute (JGI) 3300015469 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 180153 211 0 0 0 0 SRX3560346 Unrestricted 0.0 single_particle_sort 3300023517 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.D21 DOE Joint Genome Institute (JGI) 3300023517 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 441631 514 0 0 1 0 SRX4498832 Unrestricted 0.0 single_particle_sort 3300021095 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted archaeal cell/s from hot spring water in Nymph Lake, Yellowstone National Park, Wyoming, USA - Nanoarchaeota archaeon AD-903-D09 Oregon State University 3300021095 Metagenome - Single Particle Sort Spades v2.2.1 Manuscript to be submitted soon No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring water 44.75187 -110.7288 145689 186 0 0 0 0 0.0 single_particle_sort 3300037375 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.L14.redo DOE Joint Genome Institute (JGI) 3300037375 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 541005 601 0 0 0 0 SRX9402805 Unrestricted 0.0 single_particle_sort 3300019644 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-F13 DOE Joint Genome Institute (JGI) 3300019644 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 87620 122 0 0 0 0 SRX3562914 Unrestricted 0.0 single_particle_sort 3300019954 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-F21 DOE Joint Genome Institute (JGI) 3300019954 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 220038 290 0 0 0 0 SRX4654462 Unrestricted 0.0 single_particle_sort 3300033657 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P4_L21 DOE Joint Genome Institute (JGI) 3300033657 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 6539 8 0 0 0 0 SRX7529896 Unrestricted 0.0 single_particle_sort 3300018372 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-3_G11 DOE Joint Genome Institute (JGI) 3300018372 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 1950368 1800 0 0 1 0 SRX4648718 Unrestricted 0.0 single_particle_sort 3300041631 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.F6 DOE Joint Genome Institute (JGI) 3300041631 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 3632514 3428 0 0 1 0 SRX14835649 Unrestricted 0.0 single_particle_sort 3300033947 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.H13 DOE Joint Genome Institute (JGI) 3300033947 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 293795 357 0 0 0 0 SRX7626288 Unrestricted 0.0 single_particle_sort 3300036066 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_C8 DOE Joint Genome Institute (JGI) 3300036066 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 48117 77 0 0 0 0 SRX10045992 Unrestricted 0.0 single_particle_sort 3300050756 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_L15_SVS DOE Joint Genome Institute (JGI) 3300050756 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 25306 46 0 0 0 0 Restricted 0.0 single_particle_sort 3300015848 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Ash Meadows Big Spring, Nevada, USA - unknown_bacterium_SCGC_AG-297-I19 DOE Joint Genome Institute (JGI) 3300015848 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Groundwater 36.42 -116.36 7.72 98149 136 0 0 0 0 SRX3781592 Unrestricted 0.0 single_particle_sort 3300019977 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-G4 DOE Joint Genome Institute (JGI) 3300019977 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 528730 542 0 0 1 0 SRX4655807 Unrestricted 0.0 single_particle_sort 3300018129 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_K11 DOE Joint Genome Institute (JGI) 3300018129 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 371095 412 0 0 0 0 SRX4647106 Unrestricted 0.0 single_particle_sort 3300021766 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.C4 DOE Joint Genome Institute (JGI) 3300021766 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 1982295 2265 0 0 0 0 SRX4004260 Unrestricted 0.0 single_particle_sort 3300041626 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.G16 DOE Joint Genome Institute (JGI) 3300041626 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 3830819 3798 1 0 1 0 SRX14835574 Unrestricted 0.0 single_particle_sort 3300033874 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.E20 DOE Joint Genome Institute (JGI) 3300033874 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 376371 442 0 0 0 0 SRX7626822 Unrestricted 0.0 single_particle_sort 3300015648 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from a deep sea mud volcano in Anaximander Mountains, Eastern Mediterranean Sea - B25.1.2014 1113 MDM2 B25 p1 16S.M5.double-seq DOE Joint Genome Institute (JGI) 3300015648 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Mud volcano Marine Unclassified Deep sea volcano 35.3338 30.2722 734813 760 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035275 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_N9 DOE Joint Genome Institute (JGI) 3300035275 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 187319 214 0 0 0 0 SRX9538072 Unrestricted 0.0 single_particle_sort 3300023125 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.F18 DOE Joint Genome Institute (JGI) 3300023125 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 726740 830 1 0 1 0 SRX4507274 Unrestricted 0.0 single_particle_sort 3300050984 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_P1_SVS DOE Joint Genome Institute (JGI) 3300050984 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 56436 83 0 0 0 0 Restricted 0.0 single_particle_sort 3300015958 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-F07 DOE Joint Genome Institute (JGI) 3300015958 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 351907 424 0 0 0 0 SRX3551016 Unrestricted 0.0 single_particle_sort 3300014478 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.L14 DOE Joint Genome Institute (JGI) 3300014478 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1518885 1744 1 0 1 0 SRX3366667 Unrestricted 0.0 single_particle_sort 3300033674 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P4_O2 DOE Joint Genome Institute (JGI) 3300033674 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 25433 39 0 0 0 0 SRX7531023 Unrestricted 0.0 single_particle_sort 3300019526 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from Echinus Geyser water, Yellowstone National Park, Wyoming, United States - Nanoarchaeum sp. JGI 000156CP-I09 DOE Joint Genome Institute (JGI) 3300019526 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Acidic hot water 44.7225 -110.7014 1480948 1714 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300035797 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.L12 DOE Joint Genome Institute (JGI) 3300035797 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 473056 507 1 0 0 0 SRX8861263 Unrestricted 0.0 single_particle_sort 3300019681 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Parcubacteria_bacterium_SCGC_AG-650-A10 DOE Joint Genome Institute (JGI) 3300019681 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 489150 504 1 0 0 0 SRX3979520 Unrestricted 0.0 single_particle_sort 3300019453 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent sediment, Guaymas Basin, Mexico - 6AA_4869_02_16 DOE Joint Genome Institute (JGI) 3300019453 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.001 -110.5998 16946901 17865 3 0 3 0 SRX3974362 Unrestricted 0.0 single_particle_sort 3300021661 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.I21 DOE Joint Genome Institute (JGI) 3300021661 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 145270 189 0 0 0 0 SRX4009727 Unrestricted 0.0 single_particle_sort 3300023130 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.M8 DOE Joint Genome Institute (JGI) 3300023130 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 201616 208 1 0 1 0 SRX4509061 Unrestricted 0.0 single_particle_sort 3300041197 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.J21 DOE Joint Genome Institute (JGI) 3300041197 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 3141824 2995 0 0 0 0 SRX9656234 Unrestricted 0.0 single_particle_sort 3300015996 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Microgenometes bacterium SCGC_AG-274-B04 DOE Joint Genome Institute (JGI) 3300015996 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 382363 466 1 0 0 0 SRX3578246 Unrestricted 0.0 single_particle_sort 3300019388 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16006 DOE Joint Genome Institute (JGI) 3300019388 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 899373 1118 0 0 1 0 SRX3985615 Unrestricted 0.0 single_particle_sort 3300016287 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-G18 DOE Joint Genome Institute (JGI) 3300016287 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 653681 729 0 0 1 0 SRX3562928 Unrestricted 0.0 single_particle_sort 3300024622 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-E15 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024622 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 49257 57 0 0 0 0 0.0 single_particle_sort 3300021682 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.N6 DOE Joint Genome Institute (JGI) 3300021682 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 276577 298 0 0 0 0 SRX4004880 Unrestricted 0.0 single_particle_sort 3300022267 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Hadesarchaea_archaeum_SCGC_AH-151-G20 Bigelow Laboratory for Ocean Sciences 3300022267 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 350251 440 1 0 2 0 0.0 single_particle_sort 3300034453 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.H18 DOE Joint Genome Institute (JGI) 3300034453 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 303402 318 0 0 0 0 SRX8389313 Unrestricted 0.0 single_particle_sort 3300023395 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.G16 DOE Joint Genome Institute (JGI) 3300023395 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 134015 145 0 0 0 0 SRX4549224 Unrestricted 0.0 single_particle_sort 3300015747 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-K19 DOE Joint Genome Institute (JGI) 3300015747 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 135760 169 0 0 1 0 SRX3562632 Unrestricted 0.0 single_particle_sort 3300035973 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.J6 DOE Joint Genome Institute (JGI) 3300035973 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 1292907 1328 1 0 1 0 SRX8854047 Unrestricted 0.0 single_particle_sort 3300019662 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-B15 DOE Joint Genome Institute (JGI) 3300019662 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 37.4127 -118.504 8.0825 176050 210 0 0 0 0 SRX3959914 Unrestricted 0.0 single_particle_sort 3300010826 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_2_SCGC_AG-138-A22 DOE Joint Genome Institute (JGI) 3300010826 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 585985 668 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035856 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.L9 DOE Joint Genome Institute (JGI) 3300035856 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 490761 585 0 0 0 0 SRX8897041 Unrestricted 0.0 single_particle_sort 3300041360 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.J7 DOE Joint Genome Institute (JGI) 3300041360 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1495209 1534 0 0 0 0 SRX9647450 Unrestricted 0.0 single_particle_sort 3300024822 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-L07 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024822 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 237751 315 0 0 0 0 0.0 single_particle_sort 3300018399 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Mono Lake water, California, USA - MonoL_Mono2_K4 DOE Joint Genome Institute (JGI) 3300018399 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Saline and alkaline water 37.941 -119.019 3174030 3059 1 0 1 0 SRX4646957 Unrestricted 0.0 single_particle_sort 3300023755 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.M16 DOE Joint Genome Institute (JGI) 3300023755 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 148577 173 0 0 0 0 SRX4548064 Unrestricted 0.0 single_particle_sort 3300015983 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-F05 DOE Joint Genome Institute (JGI) 3300015983 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 399347 452 0 0 0 0 SRX3546975 Unrestricted 0.0 single_particle_sort 3300015441 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-2-M21 DOE Joint Genome Institute (JGI) 3300015441 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 105047 132 0 0 0 0 SRX3560358 Unrestricted 0.0 single_particle_sort 3300048730 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 159_M18_SVS DOE Joint Genome Institute (JGI) 3300048730 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 68306 102 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035946 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.N20 DOE Joint Genome Institute (JGI) 3300035946 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 873984 930 0 0 0 0 SRX8862642 Unrestricted 0.0 single_particle_sort 3300037980 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.02.E14 DOE Joint Genome Institute (JGI) 3300037980 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 321278 433 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300048725 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 159_F22_SVS DOE Joint Genome Institute (JGI) 3300048725 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 41846 65 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300041327 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.L6 DOE Joint Genome Institute (JGI) 3300041327 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 705391 753 0 0 0 0 SRX9646874 Unrestricted 0.0 single_particle_sort 3300035898 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.M14 DOE Joint Genome Institute (JGI) 3300035898 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 802143 936 1 0 1 0 SRX8899382 Unrestricted 0.0 single_particle_sort 3300019793 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-J8 DOE Joint Genome Institute (JGI) 3300019793 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 25907 31 0 0 0 0 SRX4663338 Unrestricted 0.0 single_particle_sort 3300019488 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Roseibacterium sp. HL7711_P4H5 JGI 000147CP-K15 DOE Joint Genome Institute (JGI) 3300019488 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 181842 221 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035812 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_K16 DOE Joint Genome Institute (JGI) 3300035812 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 427711 564 0 0 0 0 SRX10045768 Unrestricted 0.0 single_particle_sort 3300041151 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.G11 DOE Joint Genome Institute (JGI) 3300041151 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 860871 852 0 0 0 0 SRX9654278 Unrestricted 0.0 single_particle_sort 3300050969 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_A14_SVS DOE Joint Genome Institute (JGI) 3300050969 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 360946 493 0 0 0 0 Restricted 0.0 single_particle_sort 3300049953 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_I23_SVS DOE Joint Genome Institute (JGI) 3300049953 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 42303 51 0 0 0 0 Restricted 0.0 single_particle_sort 3300071239 *Microbiome Permanent Draft JGI R&D Study of samples from various environments in the United States Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - EnvBac_Water_edMDA_H05_scBac_plate.A DOE Joint Genome Institute (JGI) 3300071239 Metagenome - Single Particle Sort spades v. 3.15.4 released based on JGI ITS No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 602107 610 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300014987 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.H10 DOE Joint Genome Institute (JGI) 3300014987 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 170040 199 1 0 1 0 Restricted 0.0 single_particle_sort 3300032545 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.I15 DOE Joint Genome Institute (JGI) 3300032545 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 492729 566 1 0 1 0 SRX6452329 Unrestricted 0.0 single_particle_sort 3300034526 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P3_O14 DOE Joint Genome Institute (JGI) 3300034526 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 22734 55 0 0 0 0 SRX8136473 Unrestricted 0.0 single_particle_sort 3300035751 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.G20 DOE Joint Genome Institute (JGI) 3300035751 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1768773 1855 0 0 0 0 SRX8857591 Unrestricted 0.0 single_particle_sort 3300010721 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.04.L17 DOE Joint Genome Institute (JGI) 3300010721 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 53478 59 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300036053 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_J21 DOE Joint Genome Institute (JGI) 3300036053 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 122459 179 1 0 0 0 SRX10045867 Unrestricted 0.0 single_particle_sort 3300023323 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.K15 DOE Joint Genome Institute (JGI) 3300023323 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 411074 428 1 0 1 0 SRX4548818 Unrestricted 0.0 single_particle_sort 3300023410 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.M15 DOE Joint Genome Institute (JGI) 3300023410 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 915277 967 1 0 1 0 SRX4548843 Unrestricted 0.0 single_particle_sort 3300050763 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_M6_SVS DOE Joint Genome Institute (JGI) 3300050763 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 46038 64 0 0 0 0 Restricted 0.0 single_particle_sort 3300033317 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.N11 DOE Joint Genome Institute (JGI) 3300033317 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 357509 376 0 0 0 0 SRX7627679 Unrestricted 0.0 single_particle_sort 3300018202 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-P02 DOE Joint Genome Institute (JGI) 3300018202 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 522607 507 0 0 0 0 SRX3979394 Unrestricted 0.0 single_particle_sort 3300015529 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-F11 DOE Joint Genome Institute (JGI) 3300015529 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 399555 469 0 0 0 0 SRX3549453 Unrestricted 0.0 single_particle_sort 3300035779 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.G12 DOE Joint Genome Institute (JGI) 3300035779 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 618654 685 1 0 0 0 SRX8858137 Unrestricted 0.0 single_particle_sort 3300015226 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - Peregrinibacteria bacterium SCGC_AG-290-N23 DOE Joint Genome Institute (JGI) 3300015226 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 557479 564 1 0 0 0 SRX3578750 Unrestricted 0.0 single_particle_sort 3300019585 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug3-1-E21 DOE Joint Genome Institute (JGI) 3300019585 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 57286 65 0 0 0 0 SRX3550883 Unrestricted 0.0 single_particle_sort 3300041248 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.F5 DOE Joint Genome Institute (JGI) 3300041248 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1472049 1621 0 0 0 0 SRX9651532 Unrestricted 0.0 single_particle_sort 3300024737 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-K14 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024737 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 116922 159 0 0 0 0 0.0 single_particle_sort 3300041179 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.N22 DOE Joint Genome Institute (JGI) 3300041179 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1095287 1064 1 0 1 0 SRX9523939 Unrestricted 0.0 single_particle_sort 3300015789 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-D17 DOE Joint Genome Institute (JGI) 3300015789 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 188174 246 0 0 0 0 SRX3563234 Unrestricted 0.0 single_particle_sort 3300050892 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_H17_SVS DOE Joint Genome Institute (JGI) 3300050892 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 12859 24 0 0 0 0 Restricted 0.0 single_particle_sort 3300050818 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_P3_SVS DOE Joint Genome Institute (JGI) 3300050818 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 25055 37 0 0 0 0 Restricted 0.0 single_particle_sort 3300023512 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.E18 DOE Joint Genome Institute (JGI) 3300023512 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 2034632 2082 1 0 1 0 SRX4499020 Unrestricted 0.0 single_particle_sort 3300015764 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-L06 DOE Joint Genome Institute (JGI) 3300015764 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 167205 215 0 0 0 0 SRX3560948 Unrestricted 0.0 single_particle_sort 3300023598 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.D12 DOE Joint Genome Institute (JGI) 3300023598 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 613835 625 0 0 0 0 SRX4547978 Unrestricted 0.0 single_particle_sort 3300016249 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-574-C06 DOE Joint Genome Institute (JGI) 3300016249 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 518505 591 1 0 1 0 SRX3578820 Unrestricted 0.0 single_particle_sort 3300033852 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.D6 DOE Joint Genome Institute (JGI) 3300033852 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 324827 377 1 0 1 0 SRX7626160 Unrestricted 0.0 single_particle_sort 3300016178 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-L18 DOE Joint Genome Institute (JGI) 3300016178 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 557536 706 0 0 0 0 SRX3563842 Unrestricted 0.0 single_particle_sort 3300036088 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_C17 DOE Joint Genome Institute (JGI) 3300036088 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 55931 85 0 0 0 0 SRX10046434 Unrestricted 0.0 single_particle_sort 3300016546 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, USA - Atribacteria_bacterium_SCGC_AG-640-I08 DOE Joint Genome Institute (JGI) 3300016546 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Acidic Artesian spring Sediment Hot spring sediment 34.9956 -98.6889 7.5 962535 943 1 0 1 0 SRX3784233 Unrestricted 0.0 single_particle_sort 3300051070 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_O23_SVS DOE Joint Genome Institute (JGI) 3300051070 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 50027 58 0 0 0 0 Restricted 0.0 single_particle_sort 3300034725 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P8_B8 DOE Joint Genome Institute (JGI) 3300034725 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 4734 7 0 0 0 0 SRX8136482 Unrestricted 0.0 single_particle_sort 3300022244 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Acetothermia_bacterium_SCGC_AH-147-M06 Bigelow Laboratory for Ocean Sciences 3300022244 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 317433 341 1 0 0 0 0.0 single_particle_sort 3300034585 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.G20 DOE Joint Genome Institute (JGI) 3300034585 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1809390 1908 1 0 1 0 SRX8394448 Unrestricted 0.0 single_particle_sort 3300036723 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.H5.redo DOE Joint Genome Institute (JGI) 3300036723 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 931379 1082 1 0 1 0 SRX8905094 Unrestricted 0.0 single_particle_sort 3300037903 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.G15 DOE Joint Genome Institute (JGI) 3300037903 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 841324 958 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300033652 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_F20 DOE Joint Genome Institute (JGI) 3300033652 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 26209 32 0 0 0 0 SRX7529889 Unrestricted 0.0 single_particle_sort 3300018377 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Syntrophaceae_bacterium_SCGC_AG-650-J22 DOE Joint Genome Institute (JGI) 3300018377 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1862075 1809 0 0 1 0 SRX3979776 Unrestricted 0.0 single_particle_sort 3300033942 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.K12 DOE Joint Genome Institute (JGI) 3300033942 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 318824 389 0 0 0 0 SRX7626278 Unrestricted 0.0 single_particle_sort 3300016573 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - Proteobacteria_Deltaproteobacteria_bacterium_SCGC_AG-640-K14 DOE Joint Genome Institute (JGI) 3300016573 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 1720332 1725 1 0 1 0 SRX3784366 Unrestricted 0.0 single_particle_sort 3300023423 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.M13 DOE Joint Genome Institute (JGI) 3300023423 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1814102 1746 1 0 1 0 SRX4519654 Unrestricted 0.0 single_particle_sort 3300016078 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-I11 DOE Joint Genome Institute (JGI) 3300016078 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 486885 558 1 0 1 0 SRX3580011 Unrestricted 0.0 single_particle_sort 3300033711 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P2_L14 DOE Joint Genome Institute (JGI) 3300033711 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 10589 21 0 0 0 0 SRX7525388 Unrestricted 0.0 single_particle_sort 3300032534 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.K21 DOE Joint Genome Institute (JGI) 3300032534 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 651116 705 0 0 1 0 SRX6427733 Unrestricted 0.0 single_particle_sort 3300021101 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted archaeal cell/s from hot spring water in Nymph Lake, Yellowstone National Park, Wyoming, USA - Nanoarchaeota archaeon AD-903-D23 Oregon State University 3300021101 Metagenome - Single Particle Sort Spades v2.2.1 Manuscript to be submitted soon No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring water 44.75187 -110.7288 188113 242 1 0 2 0 0.0 single_particle_sort 3300033363 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.G6 DOE Joint Genome Institute (JGI) 3300033363 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 425452 456 0 0 0 0 SRX7627188 Unrestricted 0.0 single_particle_sort 3300032641 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.I16 DOE Joint Genome Institute (JGI) 3300032641 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 525005 547 1 0 1 0 SRX6451713 Unrestricted 0.0 single_particle_sort 3300015900 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-O08 DOE Joint Genome Institute (JGI) 3300015900 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 327400 349 0 0 1 0 SRX3580340 Unrestricted 0.0 single_particle_sort 3300024638 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-L14 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024638 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 54512 74 1 0 1 0 0.0 single_particle_sort 3300022990 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - Fervidibacteria bacterium JGI MDM2 DC4-3-E15 DOE Joint Genome Institute (JGI) 3300022990 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 958604 1088 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300037936 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.C21 DOE Joint Genome Institute (JGI) 3300037936 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 587258 636 0 0 1 0 SRX9410598 Unrestricted 0.0 single_particle_sort 3300034730 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P9_A21 DOE Joint Genome Institute (JGI) 3300034730 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 2691 3 0 0 0 0 SRX8136698 Unrestricted 0.0 single_particle_sort 3300021994 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Radiata Pool, Ngatamariki, New Zealand - Acetothermia bacterium JGI MDM2 NGM80-2-J14 DOE Joint Genome Institute (JGI) 3300021994 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment -38.5341 176.1723 326567 393 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300018255 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-J17 DOE Joint Genome Institute (JGI) 3300018255 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 909867 908 0 0 0 0 SRX3979356 Unrestricted 0.0 single_particle_sort 3300024838 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-E18 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024838 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 10046 9 0 0 0 0 0.0 single_particle_sort 3300032348 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.C22 DOE Joint Genome Institute (JGI) 3300032348 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 317688 358 0 0 0 0 SRX6433404 Unrestricted 0.0 single_particle_sort 3300041307 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP10cm.SYBR.1.I12 DOE Joint Genome Institute (JGI) 3300041307 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1022162 1085 1 0 1 0 SRX9646391 Unrestricted 0.0 single_particle_sort 3300010833 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_36_SCGC_AG-138-M19 DOE Joint Genome Institute (JGI) 3300010833 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 700477 776 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300021779 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.C7 DOE Joint Genome Institute (JGI) 3300021779 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1107325 1178 0 0 0 0 SRX3990134 Unrestricted 0.0 single_particle_sort 3300033387 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.I4 DOE Joint Genome Institute (JGI) 3300033387 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 43050 33 0 0 0 0 SRX7630475 Unrestricted 0.0 single_particle_sort 3300032570 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.C5 DOE Joint Genome Institute (JGI) 3300032570 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 574408 546 0 0 1 0 SRX6451722 Unrestricted 0.0 single_particle_sort 3300023152 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.02.J20 DOE Joint Genome Institute (JGI) 3300023152 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 1522784 1599 1 0 1 0 SRX4509036 Unrestricted 0.0 single_particle_sort 3300013255 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.B06 DOE Joint Genome Institute (JGI) 3300013255 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 929572 1036 1 0 1 0 SRX3366792 Unrestricted 0.0 single_particle_sort 3300024602 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-G03 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024602 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 36494 49 0 0 0 0 0.0 single_particle_sort 3300041615 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.2.E6 DOE Joint Genome Institute (JGI) 3300041615 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 712559 855 0 0 0 0 SRX14833845 Unrestricted 0.0 single_particle_sort 3300016042 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-G05 DOE Joint Genome Institute (JGI) 3300016042 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 449777 524 1 0 1 0 SRX3563372 Unrestricted 0.0 single_particle_sort 3300010806 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_24_SCGC_AG-138-J15 DOE Joint Genome Institute (JGI) 3300010806 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 437017 481 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300015944 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-K07 DOE Joint Genome Institute (JGI) 3300015944 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 345343 407 0 0 0 0 SRX3563001 Unrestricted 0.0 single_particle_sort 3300051134 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_P22_SVS DOE Joint Genome Institute (JGI) 3300051134 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 58348 92 0 0 0 0 Restricted 0.0 single_particle_sort 3300015654 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - DC4.5.2015 0309 DC4 p5 16S.M11.double-seq DOE Joint Genome Institute (JGI) 3300015654 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 720015 823 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300016142 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-O15 DOE Joint Genome Institute (JGI) 3300016142 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 553674 649 0 0 0 0 SRX3580339 Unrestricted 0.0 single_particle_sort 3300019515 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from Echinus Geyser water, Yellowstone National Park, Wyoming, United States - Geoarchaeota archaeon JGI 000156CP-M9 DOE Joint Genome Institute (JGI) 3300019515 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Acidic hot water 44.7225 -110.7014 1121571 1340 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300024802 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-P10 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024802 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 200362 248 0 0 0 0 0.0 single_particle_sort 3300033762 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P2_D4 DOE Joint Genome Institute (JGI) 3300033762 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 4163 10 0 0 0 0 SRX7525344 Unrestricted 0.0 single_particle_sort 3300034533 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P8_I7 DOE Joint Genome Institute (JGI) 3300034533 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 6910 10 0 0 0 0 SRX8136690 Unrestricted 0.0 single_particle_sort 3300015719 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-H08 DOE Joint Genome Institute (JGI) 3300015719 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 117306 171 0 0 0 0 SRX3560843 Unrestricted 0.0 single_particle_sort 3300050888 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_G18_SVS DOE Joint Genome Institute (JGI) 3300050888 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 143707 192 0 0 0 0 Restricted 0.0 single_particle_sort 3300015854 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-F21 DOE Joint Genome Institute (JGI) 3300015854 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 143152 195 0 0 0 0 SRX3546992 Unrestricted 0.0 single_particle_sort 3300023582 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.K4 DOE Joint Genome Institute (JGI) 3300023582 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 124610 173 0 0 0 0 SRX4548019 Unrestricted 0.0 single_particle_sort 3300035994 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.D10 DOE Joint Genome Institute (JGI) 3300035994 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 657042 711 1 0 1 0 SRX8856234 Unrestricted 0.0 single_particle_sort 3300024655 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-P11 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024655 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 82231 88 0 0 0 0 0.0 single_particle_sort 3300036018 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.J14 DOE Joint Genome Institute (JGI) 3300036018 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1278084 1396 1 0 1 0 SRX8857933 Unrestricted 0.0 single_particle_sort 3300048716 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_G6_SVS DOE Joint Genome Institute (JGI) 3300048716 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 61810 110 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300041633 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.J20 DOE Joint Genome Institute (JGI) 3300041633 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2310485 2459 0 0 1 0 SRX14835700 Unrestricted 0.0 single_particle_sort 3300041272 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.N13 DOE Joint Genome Institute (JGI) 3300041272 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1490491 1580 1 0 1 0 SRX9677234 Unrestricted 0.0 single_particle_sort 3300036092 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_D18 DOE Joint Genome Institute (JGI) 3300036092 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 29725 38 0 0 0 0 SRX10046437 Unrestricted 0.0 single_particle_sort 3300023380 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.L17 DOE Joint Genome Institute (JGI) 3300023380 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 897338 904 1 0 0 0 SRX4519764 Unrestricted 0.0 single_particle_sort 3300022577 *Microbiome Permanent Draft Subsurface sediment and ocean crust microbial communities from Atlantis Massif Sorted cell/s from oceanic crust serpentine and harzburgite in Atlantis Massif, mid-Atlantic ridge, Atlantic Ocean - 68B1R1_T0 The Marine Biological Laboratory 3300022577 Metagenome - Single Particle Sort SPAdes v. 3.9.0 released by JGI data releasing policy Yes Yes jackiegoordial@gmail.com Jackie Goordial No Environmental Aquatic Oceanic Marine Rock Oceanic crust 30.12983 -42.122 7988610 11354 1 0 2 0 0.0 single_particle_sort 3300032472 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.J17 DOE Joint Genome Institute (JGI) 3300032472 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 1365343 1300 0 0 0 0 SRX6426233 Unrestricted 0.0 single_particle_sort 3300019533 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent sediment, Guaymas Basin, Mexico - 6Z_4869_02_14 DOE Joint Genome Institute (JGI) 3300019533 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Sediment hydrothermal vent sediment 27.001 -110.5998 33608 36 0 0 0 0 SRX3974361 Unrestricted 0.0 single_particle_sort 3300023722 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.J7 DOE Joint Genome Institute (JGI) 3300023722 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 64980 100 0 0 0 0 SRX4501108 Unrestricted 0.0 single_particle_sort 3300018238 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_E5 DOE Joint Genome Institute (JGI) 3300018238 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 611020 681 0 0 0 0 SRX4663263 Unrestricted 0.0 single_particle_sort 3300023005 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - EM3 bacterium JGI MDM2 DC4-2-L7 DOE Joint Genome Institute (JGI) 3300023005 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 1220535 1423 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300010815 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_8_SCGC_AG-138-E13 DOE Joint Genome Institute (JGI) 3300010815 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 498484 544 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300071312 *Microbiome Permanent Draft Comparing whole genome amplification chemistries for bacterial single cell genomics Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - scBac_Watchmaker_EnviBac_sc_well4C_S81 Stanford University 3300071312 Metagenome - Single Particle Sort Spades v. 3.15.3 released per request -- IMGSUPP-4358 No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 487687 532 2 0 2 0 0.0 single_particle_sort 3300018109 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - bacterium_unknown_SCGC_AG-650-N09 DOE Joint Genome Institute (JGI) 3300018109 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 345019 293 0 0 0 0 SRX3974848 Unrestricted 0.0 single_particle_sort 3300050943 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-956-G14 DOE Joint Genome Institute (JGI) 3300050943 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1197303 -42.124435 219950 285 0 0 0 0 Restricted 0.0 single_particle_sort 3300048752 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 167_D20_SVS DOE Joint Genome Institute (JGI) 3300048752 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 96481 157 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300041606 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC60cm.SYBR.2.I18 DOE Joint Genome Institute (JGI) 3300041606 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 4298655 4146 1 0 1 0 SRX14831054 Unrestricted 0.0 single_particle_sort 3300050853 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_L6_SVS DOE Joint Genome Institute (JGI) 3300050853 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 68922 94 0 0 0 0 Restricted 0.0 single_particle_sort 3300050976 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_N21_SVS DOE Joint Genome Institute (JGI) 3300050976 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 110057 143 0 0 0 0 Restricted 0.0 single_particle_sort 3300050787 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_F8_SVS DOE Joint Genome Institute (JGI) 3300050787 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 10552 11 0 0 0 0 Restricted 0.0 single_particle_sort 3300037995 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Conch Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Conch.SYBR.03 .C8 DOE Joint Genome Institute (JGI) 3300037995 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5564 -110.8321 1013573 1144 1 0 1 0 SRX9411505 Unrestricted 0.0 single_particle_sort 3300019506 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Rhodospirillaceae bacterium HL7711_P1E10 JGI 000149CP-H14 DOE Joint Genome Institute (JGI) 3300019506 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 670595 706 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300033686 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P9_P21 DOE Joint Genome Institute (JGI) 3300033686 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 2672 4 0 0 0 0 SRX7531544 Unrestricted 0.0 single_particle_sort 3300035861 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.D11 DOE Joint Genome Institute (JGI) 3300035861 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 177077 209 0 0 0 0 SRX8897087 Unrestricted 0.0 single_particle_sort 3300024597 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-I23 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024597 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 25261 30 0 0 0 0 0.0 single_particle_sort 3300050749 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 172_A15_SVS DOE Joint Genome Institute (JGI) 3300050749 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 49208 43 0 0 0 0 Restricted 0.0 single_particle_sort 3300015920 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-B12 DOE Joint Genome Institute (JGI) 3300015920 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 307126 376 0 0 0 0 SRX3563032 Unrestricted 0.0 single_particle_sort 3300041254 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.K14 DOE Joint Genome Institute (JGI) 3300041254 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1980671 1868 0 0 0 0 SRX9651687 Unrestricted 0.0 single_particle_sort 3300024081 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.H19 DOE Joint Genome Institute (JGI) 3300024081 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 890315 938 1 0 1 0 SRX4500711 Unrestricted 0.0 single_particle_sort 3300050914 *Microbiome Permanent Draft Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean Sorted cell/s from hydrothermal vent fluid, Lost City Hydrothermal field, North Atlantic Ocean - AH-954-D20 DOE Joint Genome Institute (JGI) 3300050914 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes jmcgonigle@bigelow.org Julia McGonigle No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 30.1194355 -42.1247744 646471 747 0 0 0 0 Restricted 0.0 single_particle_sort 3300036736 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.N11.redo DOE Joint Genome Institute (JGI) 3300036736 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 1160698 1406 0 0 0 0 SRX8908780 Unrestricted 0.0 single_particle_sort 3300021797 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.J19 DOE Joint Genome Institute (JGI) 3300021797 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 481756 516 1 0 0 0 SRX3989911 Unrestricted 0.0 single_particle_sort 3300015967 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-B05 DOE Joint Genome Institute (JGI) 3300015967 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 371050 435 0 0 0 0 SRX3560451 Unrestricted 0.0 single_particle_sort 3300019611 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-D04 DOE Joint Genome Institute (JGI) 3300019611 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 56153 84 0 0 1 0 SRX3549153 Unrestricted 0.0 single_particle_sort 3300019590 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug02-4-K18 DOE Joint Genome Institute (JGI) 3300019590 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 52304 68 0 0 0 0 SRX3562617 Unrestricted 0.0 single_particle_sort 3300038037 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.05.H7 DOE Joint Genome Institute (JGI) 3300038037 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 318735 418 0 0 0 0 SRX9411223 Unrestricted 0.0 single_particle_sort 3300023637 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.G5 DOE Joint Genome Institute (JGI) 3300023637 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 95825 99 0 0 0 0 SRX4547913 Unrestricted 0.0 single_particle_sort 3300023865 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.J8 DOE Joint Genome Institute (JGI) 3300023865 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 657060 735 0 0 0 0 SRX4524246 Unrestricted 0.0 single_particle_sort 3300034705 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.2.D21 DOE Joint Genome Institute (JGI) 3300034705 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 1612781 1711 1 0 1 0 SRX8390427 Unrestricted 0.0 single_particle_sort 3300015935 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Star Diamonds mine, Free Sate, South Africa - Omnitrophica bacterium SCGC_AG-188-M22 DOE Joint Genome Institute (JGI) 3300015935 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.32 27.77 8.46 342843 388 0 0 0 0 SRX3578228 Unrestricted 0.0 single_particle_sort 3300037923 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.G14 DOE Joint Genome Institute (JGI) 3300037923 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 110412 162 0 0 0 0 SRX9410436 Unrestricted 0.0 single_particle_sort 3300019811 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-I20 DOE Joint Genome Institute (JGI) 3300019811 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 676114 720 1 0 1 0 SRX4663274 Unrestricted 0.0 single_particle_sort 3300038137 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.E22 DOE Joint Genome Institute (JGI) 3300038137 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 674402 807 0 0 0 0 SRX9411761 Unrestricted 0.0 single_particle_sort 3300035766 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.D7 DOE Joint Genome Institute (JGI) 3300035766 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 113496 129 0 0 0 0 SRX8857992 Unrestricted 0.0 single_particle_sort 3300036631 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.H18 DOE Joint Genome Institute (JGI) 3300036631 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 1214438 1413 0 0 1 0 SRX8903118 Unrestricted 0.0 single_particle_sort 3300038065 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.04.C15 DOE Joint Genome Institute (JGI) 3300038065 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 102616 129 0 0 0 0 SRX9411439 Unrestricted 0.0 single_particle_sort 3300019392 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16013 DOE Joint Genome Institute (JGI) 3300019392 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 1304695 1431 1 0 1 0 SRX3985666 Unrestricted 0.0 single_particle_sort 3300051145 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_C20_SVS DOE Joint Genome Institute (JGI) 3300051145 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 62302 109 0 0 0 0 Restricted 0.0 single_particle_sort 3300016217 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - Parcubacteria bacterium SCGC_AG-278-I07 DOE Joint Genome Institute (JGI) 3300016217 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 348442 405 1 0 0 0 SRX3578383 Unrestricted 0.0 single_particle_sort 3300023403 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.I13 DOE Joint Genome Institute (JGI) 3300023403 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 645523 637 0 0 0 0 SRX4548964 Unrestricted 0.0 single_particle_sort 3300023665 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.N12 DOE Joint Genome Institute (JGI) 3300023665 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 3236576 2850 1 0 0 0 SRX4547980 Unrestricted 0.0 single_particle_sort 3300023837 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.I19 DOE Joint Genome Institute (JGI) 3300023837 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 557127 619 0 0 1 0 SRX4525749 Unrestricted 0.0 single_particle_sort 3300033449 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.H8 DOE Joint Genome Institute (JGI) 3300033449 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 813130 861 0 0 1 0 SRX7630313 Unrestricted 0.0 single_particle_sort 3300022283 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - unknown_archaeum_SCGC_AH-147-O07 Bigelow Laboratory for Ocean Sciences 3300022283 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 1050047 1241 1 0 1 0 0.0 single_particle_sort 3300014342 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.E10 DOE Joint Genome Institute (JGI) 3300014342 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1330607 1587 1 0 1 0 SRX3366849 Unrestricted 0.0 single_particle_sort 3300034611 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.L7 DOE Joint Genome Institute (JGI) 3300034611 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1106305 1165 0 0 0 0 SRX8394785 Unrestricted 0.0 single_particle_sort 3300015509 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-F06 DOE Joint Genome Institute (JGI) 3300015509 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 348631 387 0 0 1 0 SRX3549458 Unrestricted 0.0 single_particle_sort 3300021612 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.C9 DOE Joint Genome Institute (JGI) 3300021612 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 36862 40 0 0 0 0 SRX4009939 Unrestricted 0.0 single_particle_sort 3300021698 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.I18 DOE Joint Genome Institute (JGI) 3300021698 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 290580 359 0 0 0 0 SRX4007661 Unrestricted 0.0 single_particle_sort 3300034752 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.1.F9 DOE Joint Genome Institute (JGI) 3300034752 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 1787338 1886 1 0 1 0 SRX8390295 Unrestricted 0.0 single_particle_sort 3300023336 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.L20 DOE Joint Genome Institute (JGI) 3300023336 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 749096 813 0 0 0 0 SRX4549227 Unrestricted 0.0 single_particle_sort 3300021751 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.I19 DOE Joint Genome Institute (JGI) 3300021751 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 592719 671 0 0 0 0 SRX3990133 Unrestricted 0.0 single_particle_sort 3300013029 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.F09 DOE Joint Genome Institute (JGI) 3300013029 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1577591 1814 1 0 1 0 SRX3298949 Unrestricted 0.0 single_particle_sort 3300021812 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.I21 DOE Joint Genome Institute (JGI) 3300021812 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 897912 1069 0 0 0 0 SRX3989577 Unrestricted 0.0 single_particle_sort 3300016594 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from freshwater in Walker Pond, Maine, USA - Armatimonadetes_bacterium_SCGC_AG-301-B15 DOE Joint Genome Institute (JGI) 3300016594 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole Freshwater 43.86 -69.58 7.45 2303877 2060 1 0 0 0 SRX3783253 Unrestricted 0.0 single_particle_sort 3300035468 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_H14 DOE Joint Genome Institute (JGI) 3300035468 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 245348 318 0 0 1 0 SRX9539996 Unrestricted 0.0 single_particle_sort 3300015913 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Aug08-3-M18 DOE Joint Genome Institute (JGI) 3300015913 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 268720 366 0 0 1 0 SRX3560785 Unrestricted 0.0 single_particle_sort 3300037910 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.F13 DOE Joint Genome Institute (JGI) 3300037910 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 610849 746 0 0 0 0 SRX9410326 Unrestricted 0.0 single_particle_sort 3300034716 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.1.H18 DOE Joint Genome Institute (JGI) 3300034716 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 723029 777 1 0 1 0 SRX8390536 Unrestricted 0.0 single_particle_sort 3300014442 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.E18 DOE Joint Genome Institute (JGI) 3300014442 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 975300 1159 1 0 1 0 SRX3366857 Unrestricted 0.0 single_particle_sort 3300033349 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Michigan, Michigan, United States - Uncultured microbe JGI_GLakes.MI41M.SYBR.02.F9 DOE Joint Genome Institute (JGI) 3300033349 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 44.7366 -86.7216 854822 781 0 0 0 0 SRX7630526 Unrestricted 0.0 single_particle_sort 3300021656 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.05.K10 DOE Joint Genome Institute (JGI) 3300021656 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 118444 148 0 0 0 0 SRX4009641 Unrestricted 0.0 single_particle_sort 3300022985 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - Fervidibacteria bacterium JGI MDM2 DC4-3-M21 DOE Joint Genome Institute (JGI) 3300022985 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 608449 706 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023303 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Deep Lake surface water, Antarctica - Uncultured microbe JGI DeepLkS.SYBR.02.I20 DOE Joint Genome Institute (JGI) 3300023303 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.5558 78.1913 533104 586 0 0 0 0 SRX4547884 Unrestricted 0.0 single_particle_sort 3300019492 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Alphaproteobacteria bacterium HL7711_P5A1 JGI 000151CP-C17 DOE Joint Genome Institute (JGI) 3300019492 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 266256 292 0 0 1 0 Unrestricted 0.0 single_particle_sort 3300035882 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.K13 DOE Joint Genome Institute (JGI) 3300035882 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 2150747 2204 1 0 1 0 SRX8857329 Unrestricted 0.0 single_particle_sort 3300015233 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - unknown archaeum SCGC_AG-290-N19 DOE Joint Genome Institute (JGI) 3300015233 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 626623 790 1 0 2 0 SRX3578753 Unrestricted 0.0 single_particle_sort 3300019418 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16004 DOE Joint Genome Institute (JGI) 3300019418 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 2122517 2364 1 0 1 0 SRX3985613 Unrestricted 0.0 single_particle_sort 3300015672 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Gongxiaoshe hot spring sediment, Tengchong, China - GXS.2.2014 1201 MDM2 GXS p2 16S.G11.double-seq DOE Joint Genome Institute (JGI) 3300015672 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 25.4401 98.4408 1282966 1260 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300022258 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from subsurface groundwater BLM1 in Nevada, USA - Hadesarchaea_archaeum_SCGC_AH-147-M22 Bigelow Laboratory for Ocean Sciences 3300022258 Metagenome - Single Particle Sort SPAdes 3.9.0 released per Miranda No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 36.40044 -116.469178 6.92 108054 131 1 0 0 0 0.0 single_particle_sort 3300018222 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_I17 DOE Joint Genome Institute (JGI) 3300018222 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 781662 718 0 0 1 0 SRX4646805 Unrestricted 0.0 single_particle_sort 3300023738 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.05.L22 DOE Joint Genome Institute (JGI) 3300023738 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 71958 103 0 0 0 0 SRX4391189 Unrestricted 0.0 single_particle_sort 3300015872 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-1-D10 DOE Joint Genome Institute (JGI) 3300015872 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 174998 242 0 0 0 0 SRX3539852 Unrestricted 0.0 single_particle_sort 3300010795 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Subsurface water microbial communities from Sanford underground research facility (SURF), Lead, South Dakota, USA - Cell_enrichment_40_SCGC_AG-138-N20 DOE Joint Genome Institute (JGI) 3300010795 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water Subsurface water 44.3555 -103.7648 8 348781 420 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300050866 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_B15_SVS DOE Joint Genome Institute (JGI) 3300050866 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 139702 196 0 0 0 0 Restricted 0.0 single_particle_sort 3300018348 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Drakes Springs water, California, USA - Drakes_Lass4_I14 DOE Joint Genome Institute (JGI) 3300018348 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.441 -121.402 1519799 1550 0 0 0 0 SRX4646615 Unrestricted 0.0 single_particle_sort 3300024607 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-K04 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024607 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 46085 50 0 0 0 0 0.0 single_particle_sort 3300033461 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.F4 DOE Joint Genome Institute (JGI) 3300033461 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 629339 657 0 0 0 0 SRX7630291 Unrestricted 0.0 single_particle_sort 3300016047 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-G07 DOE Joint Genome Institute (JGI) 3300016047 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 439129 529 0 0 0 0 SRX3563371 Unrestricted 0.0 single_particle_sort 3300015414 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from spring water in Crystal Spring, Nevada, USA - Omnitrophica bacterium SCGC_AG-128-O11 DOE Joint Genome Institute (JGI) 3300015414 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Tepid (25-34C) Thermal springs Unclassified freshwater 36.42 -116.32 7.26 1039804 1017 0 0 1 0 SRX3577088 Unrestricted 0.0 single_particle_sort 3300016147 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown archaeum SCGC_AG-582-L06 DOE Joint Genome Institute (JGI) 3300016147 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 499745 653 1 0 1 0 SRX3580028 Unrestricted 0.0 single_particle_sort 3300024807 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-O07 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024807 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 192528 256 0 0 0 0 0.0 single_particle_sort 3300033767 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_C18 DOE Joint Genome Institute (JGI) 3300033767 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 8526 7 0 0 0 0 SRX7525351 Unrestricted 0.0 single_particle_sort 3300038028 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.J8 DOE Joint Genome Institute (JGI) 3300038028 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 147734 151 0 0 0 0 SRX9411184 Unrestricted 0.0 single_particle_sort 3300035959 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush05.RedA.02.D14 DOE Joint Genome Institute (JGI) 3300035959 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 458377 501 0 0 0 0 SRX8862693 Unrestricted 0.0 single_particle_sort 3300041302 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.M10 DOE Joint Genome Institute (JGI) 3300041302 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1503417 1674 1 0 1 0 SRX9659367 Unrestricted 0.0 single_particle_sort 3300033580 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_M22 DOE Joint Genome Institute (JGI) 3300033580 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 18428 47 0 0 0 0 SRX7528823 Unrestricted 0.0 single_particle_sort 3300019600 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-4-K22 DOE Joint Genome Institute (JGI) 3300019600 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 64387 76 0 0 0 0 SRX3549993 Unrestricted 0.0 single_particle_sort 3300015145 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water in Cold Creek, Beatty, Nevada, USA - Nitrospirae bacterium SCGC_AG-290-L11 DOE Joint Genome Institute (JGI) 3300015145 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Creek Freshwater Unclassified freshwater 36.9648 -116.7241 7.08 689161 777 1 0 1 0 SRX3578744 Unrestricted 0.0 single_particle_sort 3300032377 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.M10 DOE Joint Genome Institute (JGI) 3300032377 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 290728 356 1 0 0 0 SRX6433527 Unrestricted 0.0 single_particle_sort 3300023628 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.H10 DOE Joint Genome Institute (JGI) 3300023628 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 1520672 1667 0 0 1 0 SRX4547911 Unrestricted 0.0 single_particle_sort 3300035849 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.L6 DOE Joint Genome Institute (JGI) 3300035849 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 1872803 1776 1 0 1 0 SRX8896949 Unrestricted 0.0 single_particle_sort 3300023157 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC29.SYBR.01.G6 DOE Joint Genome Institute (JGI) 3300023157 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 1676519 1655 1 0 1 0 SRX4509094 Unrestricted 0.0 single_particle_sort 3300033720 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P2_F7 DOE Joint Genome Institute (JGI) 3300033720 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 24572 35 0 0 0 0 SRX7525397 Unrestricted 0.0 single_particle_sort 3300050761 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 169_L5_SVS DOE Joint Genome Institute (JGI) 3300050761 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 31028 48 0 0 0 0 Restricted 0.0 single_particle_sort 3300038128 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.C7 DOE Joint Genome Institute (JGI) 3300038128 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 1623522 1623 0 0 0 0 SRX9411753 Unrestricted 0.0 single_particle_sort 3300023321 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake upper layer water, Antarctica - Uncultured microbe JGI OrgLkO2.SYBR.01.N4 DOE Joint Genome Institute (JGI) 3300023321 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 361521 386 1 0 1 0 SRX4548848 Unrestricted 0.0 single_particle_sort 3300033382 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.K4 DOE Joint Genome Institute (JGI) 3300033382 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 446443 487 0 0 1 0 SRX7626915 Unrestricted 0.0 single_particle_sort 3300015045 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.F11 DOE Joint Genome Institute (JGI) 3300015045 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 459051 599 1 0 1 0 Restricted 0.0 single_particle_sort 3300036051 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_D21 DOE Joint Genome Institute (JGI) 3300036051 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 405122 504 0 0 0 0 SRX10045868 Unrestricted 0.0 single_particle_sort 3300019800 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-I6 DOE Joint Genome Institute (JGI) 3300019800 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 179215 237 0 0 0 0 SRX4663321 Unrestricted 0.0 single_particle_sort 3300024406 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Rhizobiales bacterium JGI PFNR15_C20 DOE Joint Genome Institute (JGI) 3300024406 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 1318874 1606 1 0 2 0 Unrestricted 0.0 single_particle_sort 3300023828 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Organic Lake lower layer water, Antarctica - Uncultured microbe JGI OrgAnae.SYBR.01.L19 DOE Joint Genome Institute (JGI) 3300023828 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4561 78.1899 531003 580 1 0 1 0 SRX4549584 Unrestricted 0.0 single_particle_sort 3300014464 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.K06 DOE Joint Genome Institute (JGI) 3300014464 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1544515 1565 1 0 0 0 SRX3367724 Unrestricted 0.0 single_particle_sort 3300033668 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P3_E7 DOE Joint Genome Institute (JGI) 3300033668 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 38626 62 0 0 0 0 SRX7530960 Unrestricted 0.0 single_particle_sort 3300041355 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP30cm.SYBR.1.G21 DOE Joint Genome Institute (JGI) 3300041355 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1658041 1657 0 0 0 0 SRX9647163 Unrestricted 0.0 single_particle_sort 3300015699 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-C04 DOE Joint Genome Institute (JGI) 3300015699 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 85905 126 0 0 0 0 SRX3560802 Unrestricted 0.0 single_particle_sort 3300036626 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoS.SYBR.02.J15 DOE Joint Genome Institute (JGI) 3300036626 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.75 121.5 666027 722 1 0 0 0 SRX8902887 Unrestricted 0.0 single_particle_sort 3300071317 *Microbiome Permanent Draft Comparing whole genome amplification chemistries for bacterial single cell genomics Sorted cell/s from Mountain View Slough water, Shoreline Park, California, USA - scBac_WGAX_EnviBac_sc_well5B_S97 Stanford University 3300071317 Metagenome - Single Particle Sort Spades v. 3.15.3 released per request -- IMGSUPP-4358 No Yes rrmalmstrom@lbl.gov Rex Malmstrom No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh water 37.4324 -122.086632 306984 325 0 0 0 0 0.0 single_particle_sort 3300034600 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.L5 DOE Joint Genome Institute (JGI) 3300034600 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 895122 969 1 0 1 0 SRX8394703 Unrestricted 0.0 single_particle_sort 3300033361 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Superior, Michigan, United States - Uncultured microbe JGI_GLakes.SU08M.SYBR.03.N7 DOE Joint Genome Institute (JGI) 3300033361 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.6058 -86.8177 456916 534 0 0 1 0 SRX7627209 Unrestricted 0.0 single_particle_sort 3300033868 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.D9 DOE Joint Genome Institute (JGI) 3300033868 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 139522 178 1 0 1 0 SRX7626222 Unrestricted 0.0 single_particle_sort 3300024708 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-O19 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024708 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 91366 133 0 0 0 0 0.0 single_particle_sort 3300022609 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Abies magnifica in Yosemite National Park, California, United States - Rhodospirillales bacterium JGI AMGPRD042217_4 DOE Joint Genome Institute (JGI) 3300022609 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified leaf 37.67 -119.62 257666 322 0 0 0 0 SRX4410924 Unrestricted 0.0 single_particle_sort 3300018448 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS9_C10 DOE Joint Genome Institute (JGI) 3300018448 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov; dfdoud@lbl.gov Tanja Woyke; Devin Doud No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 722241 757 0 0 0 0 SRX4652201 Unrestricted 0.0 single_particle_sort 3300015899 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG-582-A16 DOE Joint Genome Institute (JGI) 3300015899 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 271318 346 1 0 1 0 SRX3579943 Unrestricted 0.0 single_particle_sort 3300021103 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted archaeal cell/s from hot spring water in Nymph Lake, Yellowstone National Park, Wyoming, USA - Nanoarchaeota archaeon AD-903-I14 Oregon State University 3300021103 Metagenome - Single Particle Sort Spades v2.2.1 Manuscript to be submitted soon No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring water 44.75187 -110.7288 153465 208 1 0 0 0 0.0 single_particle_sort 3300023760 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - Uncultured microbe JGI AceGSB.SYBR.01.K10 DOE Joint Genome Institute (JGI) 3300023760 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 181897 202 0 0 0 0 SRX4548059 Unrestricted 0.0 single_particle_sort 3300016604 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone spring, Oklahoma, USA - Proteobacteria_Deltaproteobacteria_bacterium_SCGC_AG-640-F20 DOE Joint Genome Institute (JGI) 3300016604 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 34.9956 -98.6889 7.5 2202552 2284 1 0 1 0 SRX3784364 Unrestricted 0.0 single_particle_sort 3300050782 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 171_C2_SVS DOE Joint Genome Institute (JGI) 3300050782 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 53111 76 0 0 0 0 Restricted 0.0 single_particle_sort 3300033713 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG819_P1_K3 DOE Joint Genome Institute (JGI) 3300033713 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 5863 9 0 0 0 0 SRX7525389 Unrestricted 0.0 single_particle_sort 3300014389 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.04.G05 DOE Joint Genome Institute (JGI) 3300014389 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 273811 360 1 0 1 0 SRX3368433 Unrestricted 0.0 single_particle_sort 3300041277 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC30cm.SYBR.1.L19 DOE Joint Genome Institute (JGI) 3300041277 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 793908 794 0 0 0 0 SRX9722256 Unrestricted 0.0 single_particle_sort 3300016571 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Zodletone Spring, Oklahoma, USA - Atribacteria_bacterium_SCGC_AG-640-D15 DOE Joint Genome Institute (JGI) 3300016571 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Acidic Artesian spring Sediment Hot spring sediment 34.9956 -98.6889 7.5 1753423 1679 1 0 1 0 SRX3784260 Unrestricted 0.0 single_particle_sort 3300023421 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.G4 DOE Joint Genome Institute (JGI) 3300023421 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1745497 1663 1 0 1 0 SRX4519763 Unrestricted 0.0 single_particle_sort 3300036097 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_L18 DOE Joint Genome Institute (JGI) 3300036097 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 85241 97 0 0 0 0 SRX10046524 Unrestricted 0.0 single_particle_sort 3300036721 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano sediment, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.TowutiS.SYBR.02.N4.redo DOE Joint Genome Institute (JGI) 3300036721 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Sediment sediment -2.4667 121.2833 835730 995 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300023587 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.N20 DOE Joint Genome Institute (JGI) 3300023587 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 245916 313 0 0 0 0 SRX4547983 Unrestricted 0.0 single_particle_sort 3300037901 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.01.I18 DOE Joint Genome Institute (JGI) 3300037901 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 1285623 1188 0 0 0 0 SRX9409812 Unrestricted 0.0 single_particle_sort 3300032477 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1005.SYBR.1.D14 DOE Joint Genome Institute (JGI) 3300032477 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 796754 876 1 0 1 0 SRX6429425 Unrestricted 0.0 single_particle_sort 3300023727 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.05.M8 DOE Joint Genome Institute (JGI) 3300023727 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 35151 46 0 0 0 0 SRX4390957 Unrestricted 0.0 single_particle_sort 3300023632 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake upper layer water, Antarctica - Uncultured microbe JGI AceLkO2.SYBR.01.E4 DOE Joint Genome Institute (JGI) 3300023632 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.4725 78.188 24273 25 0 0 0 0 SRX4547906 Unrestricted 0.0 single_particle_sort 3300016064 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-274-G21 DOE Joint Genome Institute (JGI) 3300016064 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 490448 546 1 0 1 0 SRX3578258 Unrestricted 0.0 single_particle_sort 3300033919 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Erie, Ontario, Canada - Uncultured microbe JGI_GLakes.ER15M.SYBR.02.K18 DOE Joint Genome Institute (JGI) 3300033919 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.5166 -79.8933 582296 658 0 0 1 0 SRX7626816 Unrestricted 0.0 single_particle_sort 3300015962 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-582-J22 DOE Joint Genome Institute (JGI) 3300015962 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 398100 431 0 0 0 0 SRX3580234 Unrestricted 0.0 single_particle_sort 3300035788 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo07.RedA.01.I16 DOE Joint Genome Institute (JGI) 3300035788 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 598314 651 0 0 0 0 SRX8859345 Unrestricted 0.0 single_particle_sort 3300041088 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10B.SYBR.1.C17 DOE Joint Genome Institute (JGI) 3300041088 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 33618 35 0 0 0 0 SRX9654443 Unrestricted 0.0 single_particle_sort 3300038032 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Washburn Hot Springs sediment, YNP, Wyoming, USA - JGI_FPMMC.Washbrn.SYBR.03.I14 DOE Joint Genome Institute (JGI) 3300038032 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 44.7649 -110.4303 179265 227 0 0 1 0 SRX9411192 Unrestricted 0.0 single_particle_sort 3300021663 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.E4 DOE Joint Genome Institute (JGI) 3300021663 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 157271 185 0 0 0 0 SRX4009920 Unrestricted 0.0 single_particle_sort 3300016164 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Nye County Groundwater Evaluation Oasis Valley 2, Nevada, USA - unknown bacterium SCGC_AG-657-E08 DOE Joint Genome Institute (JGI) 3300016164 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 36.96 -116.72 7.51 747236 683 0 0 1 0 SRX3594355 Unrestricted 0.0 single_particle_sort 3300023832 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.OR719.SYBR.02.N8 DOE Joint Genome Institute (JGI) 3300023832 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.8906 -83.3765 518821 589 0 0 0 0 SRX4526056 Unrestricted 0.0 single_particle_sort 3300033744 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from Ace Lake middle layer water, Antarctica - uncultured microorganism SVG957_P3_L14 DOE Joint Genome Institute (JGI) 3300033744 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes r.cavicchioli@unsw.edu.au; jmartinez@bigelow.org Rick Cavicchioli; Joaquin Martinez No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.472 78.188 13901 19 0 0 0 0 SRX7528841 Unrestricted 0.0 single_particle_sort 3300019683 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-578-F23 DOE Joint Genome Institute (JGI) 3300019683 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 423196 483 0 0 0 0 SRX4645823 Unrestricted 0.0 single_particle_sort 3300038132 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Sorted cell/s from Octopus Hot Spring filamentous streamer, YNP, Wyoming, USA - JGI_FPMMC.Octopus.SYBR.02.F5 DOE Joint Genome Institute (JGI) 3300038132 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes binskeep@montana.edu William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring filamentous streamer 44.5341 -110.7978 1506495 1809 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300015778 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr02-3-L19 DOE Joint Genome Institute (JGI) 3300015778 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 187371 232 0 0 0 0 SRX3563926 Unrestricted 0.0 single_particle_sort 3300041188 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.L8 DOE Joint Genome Institute (JGI) 3300041188 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1335954 1457 1 0 1 0 SRX9523931 Unrestricted 0.0 single_particle_sort 3300016298 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Microgenometes bacterium SCGC_AG-574-B05 DOE Joint Genome Institute (JGI) 3300016298 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 7.12 588822 752 1 0 1 0 SRX3578799 Unrestricted 0.0 single_particle_sort 3300019451 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Sorted cell/s from Southern Trench hydrothermal vent microbial mat, Guaymas Basin, Mexico - 6L_4868_03_06 DOE Joint Genome Institute (JGI) 3300019451 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Hydrothermal vents Marine Microbial mats hydrothermal vent microbial mat 27.001 -110.5999 16396887 16913 2 0 2 0 SRX3974058 Unrestricted 0.0 single_particle_sort 3300019397 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16030 DOE Joint Genome Institute (JGI) 3300019397 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.5997 -86.9178 1369864 1581 1 0 1 0 SRX3986862 Unrestricted 0.0 single_particle_sort 3300016212 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - Parcubacteria bacterium SCGC_AG-578-G11 DOE Joint Genome Institute (JGI) 3300016212 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.57 337039 370 0 0 0 0 SRX3579206 Unrestricted 0.0 single_particle_sort 3300033503 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, New York, United States - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.N7 DOE Joint Genome Institute (JGI) 3300033503 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 809380 735 1 0 1 0 SRX7630288 Unrestricted 0.0 single_particle_sort 3300015034 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.J21 DOE Joint Genome Institute (JGI) 3300015034 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 403461 492 1 0 1 0 Restricted 0.0 single_particle_sort 3300032614 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.0928.ReSo.3.D9 DOE Joint Genome Institute (JGI) 3300032614 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 234930 241 1 0 0 0 SRX6426607 Unrestricted 0.0 single_particle_sort 3300032399 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1012.ReSo.1.N4 DOE Joint Genome Institute (JGI) 3300032399 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 513749 755 0 0 0 0 SRX6449954 Unrestricted 0.0 single_particle_sort 3300024750 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-O04 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024750 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 125398 170 0 0 0 0 0.0 single_particle_sort 3300024592 *Microbiome Permanent Draft Virus host interactions at the single cell level in hot springs of Yellowstone National Park, Wyoming, USA Sorted cell/s from Nymph Lake 01 (NL01) hot spring Yellowstone National Park, Wyoming, USA - SCGC AD-903-M10 Bigelow Laboratory Single Cell Genomics Center (SCGC) 3300024592 Metagenome - Single Particle Sort Spades v. 3.0.0 released by JGI data releasing policy No Yes myoung@montana.edu Mark Young No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Hot spring 44.751746 -110.728562 24274 38 0 0 0 0 0.0 single_particle_sort 3300016559 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Sorted cell/s from deep shales in West Virginia, USA - MahaSR_06_H3 DOE Joint Genome Institute (JGI) 3300016559 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Shale gas reservoir Deep subsurface Produced water/Flow back deep subsurface 39.6017 -79.9761 1194492 1376 0 0 1 0 SRX3577100 Unrestricted 0.0 single_particle_sort 3300021718 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR11.SmLR.04.M8 DOE Joint Genome Institute (JGI) 3300021718 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2413 21.4947 338598 468 0 0 0 0 SRX4004988 Unrestricted 0.0 single_particle_sort 3300033239 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Sorted cell/s from fresh water in Lake Ontario, Ontario, Canada - Uncultured microbe JGI_GLakes.ON55M.SYBR.03.C5 DOE Joint Genome Institute (JGI) 3300033239 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.4433 -77.4383 199979 209 0 0 0 0 SRX7630692 Unrestricted 0.0 single_particle_sort 3300015134 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - unknown bacterium SCGC_AG-274-M15 DOE Joint Genome Institute (JGI) 3300015134 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 565411 625 1 0 1 0 SRX3578333 Unrestricted 0.0 single_particle_sort 3300016256 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Apr02-2-D15 DOE Joint Genome Institute (JGI) 3300016256 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 546960 626 0 0 0 0 SRX3562816 Unrestricted 0.0 single_particle_sort 3300024390 *Microbiome Permanent Draft Saline lake microbial communities from various lakes in Antarctica Sorted cell/s from saline lake surface water, Rauer Islands, Antarctica - Uncultured microbe JGI Filla3.SYBR.01.M17 DOE Joint Genome Institute (JGI) 3300024390 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes r.cavicchioli@unsw.edu.au Rick Cavicchioli No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water -68.8146 77.8273 224744 249 0 0 0 0 SRX4547864 Unrestricted 0.0 single_particle_sort 3300019497 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Sorted cell/s from microbial mat in Hot Lake, Washington, United States - Roseibacterium sp. HL7711_P4H5 JGI 000147CP-H10 DOE Joint Genome Institute (JGI) 3300019497 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 48.972613 -119.477608 467242 547 1 0 1 0 Unrestricted 0.0 single_particle_sort 3300015677 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Jinze hot spring sediment, Tengchong, China - JNZ.1.2014 1216 MDM2 JNZ p1 16S.F10.double-seq DOE Joint Genome Institute (JGI) 3300015677 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 25.4413 98.46 1625850 1507 1 0 0 0 Unrestricted 0.0 single_particle_sort 3300035887 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Sorted cell/s from Lake Matano water column, South Sulawesi, Indonesia - Uncultured microbe JGI_Crowe.MatanoW.SYBR.03.H11 DOE Joint Genome Institute (JGI) 3300035887 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Lake Freshwater Unclassified freshwater -2.4667 121.2833 279806 337 1 0 1 0 SRX8897917 Unrestricted 0.0 single_particle_sort 3300010723 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater sediment microbial communities from Lake Baikal, Russia - MDM2.LBSED01.16Sneg.03.H15 DOE Joint Genome Institute (JGI) 3300010723 Metagenome - Single Particle Sort spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Lake Freshwater Sediment Freshwater sediment 53.7598 107.9791 7.32 46348 60 0 0 0 0 Unrestricted 0.0 single_particle_sort 3300035753 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush04.RedA.02.H19 DOE Joint Genome Institute (JGI) 3300035753 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1266919 1321 1 0 1 0 SRX8857589 Unrestricted 0.0 single_particle_sort 3300014447 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring sediment in Dewar Creek, British Columbia, Canada - JGI.MDM2.DC4.SYBR.03.F04 DOE Joint Genome Institute (JGI) 3300014447 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1088378 1317 0 0 1 0 SRX3298947 Unrestricted 0.0 single_particle_sort 3300019791 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-J4 DOE Joint Genome Institute (JGI) 3300019791 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 61858 69 1 0 0 0 SRX4663339 Unrestricted 0.0 single_particle_sort 3300024135 *Microbiome Permanent Draft Above-ground endophytic microbial communities from plants in different locations in the United States Sorted cell/s from leaf-associated microbial communities from Pinus flexilis in Colorado, USA - Pseudomonas bacterium JGI PFNR15_F21 DOE Joint Genome Institute (JGI) 3300024135 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes cfrank3@ucmerced.edu Carolin Frank No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Pine needles 40.0329 -105.5464 712655 789 1 0 2 0 Unrestricted 0.0 single_particle_sort 3300019948 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-F9 DOE Joint Genome Institute (JGI) 3300019948 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 144268 176 0 0 0 0 SRX4654471 Unrestricted 0.0 single_particle_sort 3300015877 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from water treatment plant in SURF, South Dakota, USA - unknown bacterium SCGC_AG-582-K07 DOE Joint Genome Institute (JGI) 3300015877 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Engineered Built environment Unclassified Water treatment plant Unclassified Water treatment plant 44.35 -103.76 6.79 224080 259 0 0 0 0 SRX3580216 Unrestricted 0.0 single_particle_sort 3300019658 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from underground thermal water from 5P borehole, Tomsk, Russia - Ignavibacteria_SCGC_AG-717-F15 DOE Joint Genome Institute (JGI) 3300019658 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Drilled well/Borehole Groundwater 58.0758 82.8374 7.49-7.6 246563 206 0 0 0 0 SRX3940795 Unrestricted 0.0 single_particle_sort 3300049951 *Microbiome Permanent Draft Seawater viral communities from Blanes Bay, Mediterranean Sea, Spain Sorted viral particle/s from seawater from Blanes Bay, Mediterranean Sea, Spain - 168_I19_SVS DOE Joint Genome Institute (JGI) 3300049951 Metagenome - Single Particle Sort spades v. 3.15.3 released based on JGI ITS No Yes m.martinez@ua.es Manuel Martinez Garcia No Environmental Aquatic Unclassified Marine Unclassified Seawater 41.6833 2.8 138464 181 0 0 0 0 Restricted 0.0 single_particle_sort 3300041153 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.TP60cm.SYBR.1.F10 DOE Joint Genome Institute (JGI) 3300041153 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 2800686 2748 1 0 1 0 SRX9649227 Unrestricted 0.0 single_particle_sort 3300024067 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe Ottese.MC1.SYBR.01.H10 DOE Joint Genome Institute (JGI) 3300024067 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 75021 101 0 0 0 0 SRX4500686 Unrestricted 0.0 single_particle_sort 3300023975 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Sorted cell/s from McNutts Creek water, Athens, Georgia, United States - Uncultured microbe JGI Ottese.MC11.SYBR.01.I10 DOE Joint Genome Institute (JGI) 3300023975 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 1816603 1778 1 0 1 0 SRX4522601 Unrestricted 0.0 single_particle_sort 3300018227 *Microbiome Permanent Draft Microbial communities from different environments and locations in California and Nevada and their role in C-cycling Sorted cell/s from Great Boiling Springs water, Nevada, USA - GBS_GBS2-4_B18 DOE Joint Genome Institute (JGI) 3300018227 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.663 -119.367 575389 619 0 0 0 0 SRX4652763 Unrestricted 0.0 single_particle_sort 3300014998 *Microbiome Permanent Draft Seawater microbial communities and sorted cell/s from Western Sargasso Sea Sorted cell/s from marine samples in Sargasso Sea - Pelagibacteraceae bacterium JGI BSAE-1614-1.J12 DOE Joint Genome Institute (JGI) 3300014998 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes steve.giovannoni@oregonstate.edu Stephen Giovannoni No Environmental Aquatic Oceanic Marine Photic zone seawater 32.1666 -64.5 236642 281 0 0 1 0 Restricted 0.0 single_particle_sort 3300035486 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_M19 DOE Joint Genome Institute (JGI) 3300035486 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 23423 21 0 0 0 0 SRX9540492 Unrestricted 0.0 single_particle_sort 3300019896 *Microbiome Permanent Draft Microbial communities from various locations to find New Lineages of Life (NeLLi) Sorted cell/s from hot spring sediment in Blank Spring, Williams, California, United States - uncultured microorganism JGI BlankSpring-1-L12 DOE Joint Genome Institute (JGI) 3300019896 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment sediment 39.031 -122.432 114002 102 0 0 0 0 SRX4663343 Unrestricted 0.0 single_particle_sort 3300015443 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-F13 DOE Joint Genome Institute (JGI) 3300015443 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 115939 140 0 0 0 0 SRX3549452 Unrestricted 0.0 single_particle_sort 3300015981 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from groundwater in Beatrix mine, Free Sate, South Africa - Parcubacteria bacterium SCGC_AG-274-L10 DOE Joint Genome Institute (JGI) 3300015981 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Groundwater Deep subsurface Mine water groundwater -28.24 26.8 8.55 417793 451 1 0 1 0 SRX3578278 Unrestricted 0.0 single_particle_sort 3300041596 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.C14 DOE Joint Genome Institute (JGI) 3300041596 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1530227 1572 0 0 1 0 SRX10044858 Unrestricted 0.0 single_particle_sort 3300021617 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Olkiluoto Island deep subsurface site groundwater, Finland - uncultured microorganism JGI SbSrfc.KR13.SmLR.04.L14 DOE Joint Genome Institute (JGI) 3300021617 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 61.2418 21.4803 39331 41 0 0 0 0 SRX4009963 Unrestricted 0.0 single_particle_sort 3300016189 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from Crystal Geyser water, Green River, Utah, USA - CrystG Aug02-3-L07 DOE Joint Genome Institute (JGI) 3300016189 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 601238 725 0 0 0 0 SRX3560801 Unrestricted 0.0 single_particle_sort 3300036079 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Sorted cell/s from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_C13 DOE Joint Genome Institute (JGI) 3300036079 Metagenome - Single Particle Sort spades v. 3.13.0 released based on JGI ITS No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 49045 56 0 0 0 0 SRX10046316 Unrestricted 0.0 single_particle_sort 3300041299 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Sorted cell/s from peatland in MTU Mesocosm Facility, Houghton, MI, USA - JGI_Llskov.PC10cm.SYBR.3.M5 DOE Joint Genome Institute (JGI) 3300041299 Metagenome - Single Particle Sort spades v. 3.14.1 released based on JGI ITS No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5478 1249646 1159 0 0 0 0 SRX9656623 Unrestricted 0.0 single_particle_sort 3300034757 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo09.RedA.2.F22 DOE Joint Genome Institute (JGI) 3300034757 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.7972 2343142 2398 1 0 1 0 SRX8390383 Unrestricted 0.0 single_particle_sort 3300015476 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-3-E15 DOE Joint Genome Institute (JGI) 3300015476 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 178184 229 0 0 0 0 SRX3549447 Unrestricted 0.0 single_particle_sort 3300018260 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Sorted cell/s from hot spring microbial mat in Cone Pool, Little Hot Creek, California, USA - Ignavibacteria_bacterium_SCGC_AG-650-G19 DOE Joint Genome Institute (JGI) 3300018260 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Hot spring microbial mat 37.4127 -118.504 8.0825 1034377 938 0 0 0 0 SRX3981456 Unrestricted 0.0 single_particle_sort 3300035971 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo05.RedA.02.H16 DOE Joint Genome Institute (JGI) 3300035971 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 662076 692 0 0 0 0 SRX8854046 Unrestricted 0.0 single_particle_sort 3300022084 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.C9 DOE Joint Genome Institute (JGI) 3300022084 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 775137 859 0 0 0 0 SRX3991099 Unrestricted 0.0 single_particle_sort 3300021817 *Microbiome Permanent Draft Groundwater microbial communities from three deep subsurface sites in Europe Sorted cell/s from the Aspo Hard Rock Laboratory (HRL) deep subsurface site groundwater, Oskarshamn, Sweden - uncultured microorganism SbSrfc.KA33.01.G21 DOE Joint Genome Institute (JGI) 3300021817 Metagenome - Single Particle Sort spades v. 3.10.1 No Yes mark.dopson@lnu.se Mark Dopson No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 57.4344 16.66 1281262 1373 1 0 1 0 SRX3989599 Unrestricted 0.0 single_particle_sort 3300032499 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Sorted cell/s from seawater in Monterey Bay, California, United States - Uncultured microbe JGI Moran1.1028.ReSo.2.N12 DOE Joint Genome Institute (JGI) 3300032499 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 960639 1164 0 0 0 0 SRX6451977 Unrestricted 0.0 single_particle_sort 3300016089 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Sorted cell/s from water of Crystal Geyser, Green River, Utah, USA - CrystG Apr3-2-C20 DOE Joint Genome Institute (JGI) 3300016089 Metagenome - Single Particle Sort spades v. 3.9.0 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified groundwater 38.9383 -110.1354 463079 570 0 0 0 0 SRX3542767 Unrestricted 0.0 single_particle_sort 3300034451 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Sorted cell/s from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.D19 DOE Joint Genome Institute (JGI) 3300034451 Metagenome - Single Particle Sort spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 631161 675 0 0 0 0 SRX8389180 Unrestricted 0.0 single_particle_sort 3300020643 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera22 DOE Joint Genome Institute (JGI) 3300020643 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 6174575 6411 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010683 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.G19.16S negative DOE Joint Genome Institute (JGI) 3300010683 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1571308 1593 0 0 0 0 SRX2750448 Unrestricted 0.0 Single_particle_sort 3300010527 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.E9.16S negative DOE Joint Genome Institute (JGI) 3300010527 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 584939 682 0 0 0 0 SRX2750702 Unrestricted 0.0 Single_particle_sort 3300041876 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Cand. Thiomargarita magnifica 61 DOE Joint Genome Institute (JGI) 3300041876 Metagenome - Cell Enrichment spades v. 3.14.1 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 3319691 3631 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034516 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.PSCntrl.SYBR.02.K9 DOE Joint Genome Institute (JGI) 3300034516 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 1680177 1964 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300047125 *Microbiome Permanent Draft Freshwater fungal communities from various locations Enriched cells from freshwater from bog in First Sister Lake, Ann Arbor, Michigan, United States - PSC224 Chytrid MDA DOE Joint Genome Institute (JGI) 3300047125 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes tyjames@umich.edu Timothy Y. James No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.282868 -83.793196 38678444 42859 8 3 9 4 Restricted 0.0 Single_particle_sort 3300032846 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep2 HSBNCT.FGM.300.1.F11 DOE Joint Genome Institute (JGI) 3300032846 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 6611656 6660 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300032529 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep2 HSBNCT.T11.300.1.E9 DOE Joint Genome Institute (JGI) 3300032529 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 4333017 4558 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300034207 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep1 HSBNCT.FG11.300.03.N6 DOE Joint Genome Institute (JGI) 3300034207 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 748986 774 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300021523 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from agricultural soil in Iowa, United States - IA12soil_B_GH6A(+) DOE Joint Genome Institute (JGI) 3300021523 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov; aaron.wright@pnnl.gov Tanja Woyke; Aaron Wright No Environmental Terrestrial Agricultural land Soil Unclassified soil 41.9167 -93.75 3497767 4353 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032927 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep2 HSBNCT.FGM.300.1.C8 DOE Joint Genome Institute (JGI) 3300032927 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 8795375 8284 7 0 4 0 Unrestricted 0.0 Single_particle_sort 3300047124 *Microbiome Permanent Draft Freshwater fungal communities from various locations Enriched cells from freshwater from pond in Lakeside Lab, University of Michigan, United States - PSC018 Chytrid MDA DOE Joint Genome Institute (JGI) 3300047124 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes tyjames@umich.edu Timothy Y. James No Environmental Aquatic Pond Freshwater Unclassified Freshwater 42.465463 -84.003759 7994878 8834 3 1 3 1 Restricted 0.0 Single_particle_sort 3300047227 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_AV2_D3 DOE Joint Genome Institute (JGI) 3300047227 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 24465881 46284 20 0 35 0 Restricted 99.55 Single_particle_sort 3300020856 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera68 DOE Joint Genome Institute (JGI) 3300020856 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5528777 5510 0 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032653 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep2 HSBNCT.T11.300.1.N8 DOE Joint Genome Institute (JGI) 3300032653 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 10333293 8761 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300005121 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrospira DOME DR14B44 DOE Joint Genome Institute (JGI) 3300005121 Metagenome - Cell Enrichment spades v. 3.0.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 5807519 5958 2 0 2 0 SRX2482153 Unrestricted 0.0 Single_particle_sort 3300020907 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera71 DOE Joint Genome Institute (JGI) 3300020907 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7584062 8033 4 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010436 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.F22.16S negative DOE Joint Genome Institute (JGI) 3300010436 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 174970 223 0 0 1 0 SRX2751895 Unrestricted 0.0 Single_particle_sort 3300033100 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep3 HSBNCT.N11.300.1.E14 DOE Joint Genome Institute (JGI) 3300033100 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3428602 3601 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007671 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C07_wellB03 DOE Joint Genome Institute (JGI) 3300007671 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 26979 50 0 0 0 0 SRX3201147 Unrestricted 0.0 Single_particle_sort 3300021011 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera41 DOE Joint Genome Institute (JGI) 3300021011 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 9552087 9580 6 0 4 0 Unrestricted 0.0 Single_particle_sort 3300036299 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.1.E4 DOE Joint Genome Institute (JGI) 3300036299 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 3883987 3709 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034310 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells T11 rep2 HSBNCT.T11.5000.01.H3 DOE Joint Genome Institute (JGI) 3300034310 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3919 5666419 5994 1 0 5 0 Unrestricted 0.0 Single_particle_sort 3300004068 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from Chapel Hill, North Carolina, USA - Col MF FACS DOE Joint Genome Institute (JGI) 3300004068 Metagenome - Cell Enrichment MEGAHIT v. 0.2.0 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9077 -79.0508 18875531 68193 43 12 82 25 Unrestricted 0.0 Single_particle_sort 3300021039 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera51 DOE Joint Genome Institute (JGI) 3300021039 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 12682813 12822 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300007379 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C93_wellH04 DOE Joint Genome Institute (JGI) 3300007379 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 594006 735 0 0 0 0 SRX3201127 Unrestricted 0.0 Single_particle_sort 3300032793 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep1 HSBNCT.FGM.300.1.D6 DOE Joint Genome Institute (JGI) 3300032793 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 2750662 2500 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020763 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera83 DOE Joint Genome Institute (JGI) 3300020763 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 7324193 7631 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034913 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_K4 DOE Joint Genome Institute (JGI) 3300034913 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 24261 32 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300017806 *Microbiome Permanent Draft Marine microbial communities from the Costa Rica Dome and surrounding waters Marine microbial communities from the Costa Rica Dome - N26 C3 mini metaG DOE Joint Genome Institute (JGI) 3300017806 Metagenome - Cell Enrichment MEGAHIT v. 1.0.6 Yes Yes msaito@whoi.edu Mak Saito No Environmental Aquatic Oceanic Marine Photic zone Seawater 0.8736 -97.0511 60063353 72588 47 2 61 4 SRX3375720 Unrestricted 0.0 Single_particle_sort 3300007449 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D98_LAv2 DOE Joint Genome Institute (JGI) 3300007449 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 11029861 10207 4 0 3 0 SRX2939911 Unrestricted 0.0 Single_particle_sort 3300010961 *Microbiome Permanent Draft Mouse host associated microbial communities from Vienna, Austria Mouse cecal microbial communities from Vienna, Austria - N-Acetylneuraminic and N-Acetylglucosamine D2O microcosms_March DOE Joint Genome Institute (JGI) 3300010961 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes romans@mit.edu Roman Stocker No Host-associated Mammals Large intestine Digestive system Cecum Mouse cecum 48.2 16.37 227320594 235766 96 0 113 0 SRX2954892 Unrestricted 0.0 Single_particle_sort 3300020883 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera64 DOE Joint Genome Institute (JGI) 3300020883 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 6662203 6845 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300010444 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.B20.16S negative DOE Joint Genome Institute (JGI) 3300010444 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 34522 42 0 0 0 0 SRX2749606 Unrestricted 0.0 Single_particle_sort 3300010656 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.D20.16S negative DOE Joint Genome Institute (JGI) 3300010656 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1253004 1344 1 0 1 0 SRX2750455 Unrestricted 0.0 Single_particle_sort 3300036201 *Microbiome Permanent Draft Marine microalgae viral communities from raceway pond in Palavas-les-Flots, France Enriched cells of marine microalgae from raceway pond in Palavas-les-Flots, France - 23.10.P4 MEGA virome DOE Joint Genome Institute (JGI) 3300036201 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes guillaume.blanc@mio.osupytheas.fr Guillaume Blanc No Host-associated Algae Unclassified Microalgae Unclassified marine microalgae 43.5198 3.9073 37827334 39254 9 0 10 0 Unrestricted 0.0 Single_particle_sort 3300010445 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.M9.16S negative DOE Joint Genome Institute (JGI) 3300010445 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 39846 48 0 0 0 0 SRX2748932 Unrestricted 0.0 Single_particle_sort 3300031332 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.CF.UnFx.1-dapi+.3 DOE Joint Genome Institute (JGI) 3300031332 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 21219069 21852 17 0 19 0 Unrestricted 0.0 Single_particle_sort 3300020622 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera78 DOE Joint Genome Institute (JGI) 3300020622 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 8920569 9027 6 0 3 0 Unrestricted 0.0 Single_particle_sort 3300024216 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.H3 DOE Joint Genome Institute (JGI) 3300024216 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 8640464 9670 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032834 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep2 HSBNCT.FGM.300.1.L10 DOE Joint Genome Institute (JGI) 3300032834 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 15110171 13665 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300032835 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep3 HSBNCT.FGM.300.1.D14 DOE Joint Genome Institute (JGI) 3300032835 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 7094373 6309 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300017882 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-3_M3 DOE Joint Genome Institute (JGI) 3300017882 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 4541147 5331 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300003521 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis roots microbial communities from Chapel Hill, North Carolina, USA - Cvi MF nosort DOE Joint Genome Institute (JGI) 3300003521 Metagenome - Cell Enrichment Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Unclassified Roots Unclassified Arabidopsis roots 35.9077 -79.0508 108823598 183491 8 4 9 4 Unrestricted 0.0 Single_particle_sort 3300005124 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrospira DOME DR08B08 DOE Joint Genome Institute (JGI) 3300005124 Metagenome - Cell Enrichment spades v. 3.0.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 17476748 17289 2 0 5 0 SRX2482150 Unrestricted 0.0 Single_particle_sort 3300021015 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera92 DOE Joint Genome Institute (JGI) 3300021015 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 10464578 10235 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300007675 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C69_wellD06 DOE Joint Genome Institute (JGI) 3300007675 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 10421 17 0 0 0 0 SRX3201345 Unrestricted 0.0 Single_particle_sort 3300023432 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities from Utah, United States - BONCAT_SYTO_Terrestrial_sediment - 11 DOE Joint Genome Institute (JGI) 3300023432 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 101129387 297456 148 0 235 2 Unrestricted 13.67 Single_particle_sort 3300007416 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D30_HAv2 DOE Joint Genome Institute (JGI) 3300007416 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 2512116 2389 1 1 1 1 SRX2938484 Unrestricted 0.0 Single_particle_sort 3300020838 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera74 DOE Joint Genome Institute (JGI) 3300020838 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 4416189 4513 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300038888 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.1.2015 0410 MDM2 LHC4 sed p1 16S.H4.double-peak DOE Joint Genome Institute (JGI) 3300038888 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 744471 869 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300032710 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep3 HSBNCT.T11.300.1.M15 DOE Joint Genome Institute (JGI) 3300032710 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 1624590 1569 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020617 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera74 DOE Joint Genome Institute (JGI) 3300020617 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 7010462 7387 0 0 3 0 Unrestricted 0.0 Single_particle_sort 3300010679 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.K12.16S negative DOE Joint Genome Institute (JGI) 3300010679 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1255626 1552 0 0 0 0 SRX2750311 Unrestricted 0.0 Single_particle_sort 3300036696 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells N11 rep3 HSBNCT.N11.5000.01.K5 DOE Joint Genome Institute (JGI) 3300036696 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3921 4049282 4266 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300021014 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera29 DOE Joint Genome Institute (JGI) 3300021014 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 9175963 9696 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300005125 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME CR02B12 DOE Joint Genome Institute (JGI) 3300005125 Metagenome - Cell Enrichment spades v. 3.0.0 Nikos: made them private temporary due to Tanja;s request for quality control check No Yes wagner@microbial-ecology.net, NNIvanova@lbl.gov; wagner@microbial-ecology.net Michael Wagner, Natalia Ivanova; Michael Wagner Yes 28386012.0 Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 19283945 19174 7 0 6 0 SRX2482201, SRX2482202 Unrestricted 0.0 Single_particle_sort 3300007674 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C51_wellA06 DOE Joint Genome Institute (JGI) 3300007674 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 5932 10 0 0 0 0 SRX3201142 Unrestricted 0.0 Single_particle_sort 3300020770 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera60 DOE Joint Genome Institute (JGI) 3300020770 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7747860 8240 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300007383 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C81_wellF04 DOE Joint Genome Institute (JGI) 3300007383 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 645221 852 0 0 0 0 SRX3200781 Unrestricted 0.0 Single_particle_sort 3300010458 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.H17.16S negative DOE Joint Genome Institute (JGI) 3300010458 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 166713 198 0 0 0 0 SRX2749581 Unrestricted 0.0 Single_particle_sort 3300023947 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.F3 DOE Joint Genome Institute (JGI) 3300023947 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 1052455 1262 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300006762 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C08_wellB02 DOE Joint Genome Institute (JGI) 3300006762 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 1095235 1406 1 0 2 0 SRX3200238 Unrestricted 0.0 Single_particle_sort 3300032831 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep2 HSBNCT.FGM.300.1.L8 DOE Joint Genome Institute (JGI) 3300032831 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 15129091 13080 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034826 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells PlantN RepA EcoBCT.PlantN.5000.1.E6 DOE Joint Genome Institute (JGI) 3300034826 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 8802406 9781 5 0 6 0 Unrestricted 0.0 Single_particle_sort 3300047212 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_HPG2_E3 DOE Joint Genome Institute (JGI) 3300047212 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 37508040 70277 28 0 66 0 Restricted 76.31 Single_particle_sort 3300032819 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep1 HSBNCT.FGM.300.1.N3 DOE Joint Genome Institute (JGI) 3300032819 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 12490859 10879 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010638 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.F13.16S negative DOE Joint Genome Institute (JGI) 3300010638 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1113885 1243 0 0 0 0 SRX2749359 Unrestricted 0.0 Single_particle_sort 3300046969 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.K7 DOE Joint Genome Institute (JGI) 3300046969 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 12348105 12507 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020972 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera10 DOE Joint Genome Institute (JGI) 3300020972 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 6431176 6077 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010512 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.B9.16S negative DOE Joint Genome Institute (JGI) 3300010512 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 409568 565 0 0 0 0 SRX2750262 Unrestricted 0.0 Single_particle_sort 3300032912 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.Aug13.5000.01.C7 DOE Joint Genome Institute (JGI) 3300032912 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 8991578 9282 4 0 7 0 Unrestricted 0.0 Single_particle_sort 3300020879 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera43 DOE Joint Genome Institute (JGI) 3300020879 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 6487088 6544 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300031350 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.CF.EtOH.1-fish+.1 DOE Joint Genome Institute (JGI) 3300031350 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 22621662 23867 11 1 16 0 Unrestricted 0.0 Single_particle_sort 3300010441 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.H22.16S negative DOE Joint Genome Institute (JGI) 3300010441 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 69191 87 0 0 0 0 SRX2749670 Unrestricted 0.0 Single_particle_sort 3300007567 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C91_wellH06 DOE Joint Genome Institute (JGI) 3300007567 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 3333 4 0 0 0 0 SRX3202754 Unrestricted 0.0 Single_particle_sort 3300033133 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep2 HSBNCT.N11.300.1.C11 DOE Joint Genome Institute (JGI) 3300033133 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3780262 4045 4 0 2 0 Unrestricted 0.0 Single_particle_sort 3300036306 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.1.M3 DOE Joint Genome Institute (JGI) 3300036306 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 2723844 2988 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034442 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.PSCntrl.SYBR.02.K4 DOE Joint Genome Institute (JGI) 3300034442 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 813177 910 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300007676 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C73_wellE06 DOE Joint Genome Institute (JGI) 3300007676 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 22609 40 0 0 0 0 SRX3202109 Unrestricted 0.0 Single_particle_sort 3300021016 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera74 DOE Joint Genome Institute (JGI) 3300021016 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 10285386 10091 1 0 4 0 Unrestricted 0.0 Single_particle_sort 3300036694 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells N11 rep3 HSBNCT.N11.5000.01.L5 DOE Joint Genome Institute (JGI) 3300036694 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3921 5645574 6185 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300007415 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge DR12_LAN DOE Joint Genome Institute (JGI) 3300007415 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 2371473 2375 4 0 4 0 SRX2932860 Unrestricted 0.0 Single_particle_sort 3300017899 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-7_H3 DOE Joint Genome Institute (JGI) 3300017899 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 28535802 28852 8 0 13 0 Unrestricted 0.0 Single_particle_sort 3300034293 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Benguela upwelling system, South Atlantic Ocean - Thioflexothrix JNN161YC_Rep4_CE DOE Joint Genome Institute (JGI) 3300034293 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Oceanic Marine Sediment sediment -19.9993 12.6791 1917292 2283 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300009273 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsH04-p2 DOE Joint Genome Institute (JGI) 3300009273 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 2886684 3470 0 0 1 0 SRX3205292 Unrestricted 0.0 Single_particle_sort 3300007414 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge DR08_H0 DOE Joint Genome Institute (JGI) 3300007414 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 2148872 2280 1 1 1 0 SRX2932856 Unrestricted 0.0 Single_particle_sort 3300036695 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells N11 rep2 HSBNCT.N11.5000.01.I6 DOE Joint Genome Institute (JGI) 3300036695 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3921 5365882 5867 4 0 6 0 Unrestricted 0.0 Single_particle_sort 3300005126 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrospira DOME C09B39 DOE Joint Genome Institute (JGI) 3300005126 Metagenome - Cell Enrichment spades v. 3.0.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 20634008 20350 8 0 10 0 SRX2095537 Unrestricted 0.0 Single_particle_sort 3300047263 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_AV2_E3 DOE Joint Genome Institute (JGI) 3300047263 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 24545390 48739 18 0 44 0 Restricted 250.03 Single_particle_sort 3300020851 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera14 DOE Joint Genome Institute (JGI) 3300020851 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5206009 5147 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300007704 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C01_wellA03 DOE Joint Genome Institute (JGI) 3300007704 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 37613 37 0 0 0 0 SRX3201122 Unrestricted 0.0 Single_particle_sort 3300024122 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.E6 DOE Joint Genome Institute (JGI) 3300024122 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 16170962 17744 5 0 5 0 Unrestricted 0.0 Single_particle_sort 3300010709 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.L14.16S negative DOE Joint Genome Institute (JGI) 3300010709 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 2592519 2366 1 0 1 0 SRX2750398 Unrestricted 0.0 Single_particle_sort 3300010563 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.K9.EM3 DOE Joint Genome Institute (JGI) 3300010563 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 669100 843 0 0 0 0 SRX2750800 Unrestricted 0.0 Single_particle_sort 3300034937 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_K4 DOE Joint Genome Institute (JGI) 3300034937 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 151738 185 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300033038 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep2 HSBNCT.N11.300.1.E9 DOE Joint Genome Institute (JGI) 3300033038 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3016505 3214 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010648 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.D12.16S negative DOE Joint Genome Institute (JGI) 3300010648 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1245111 1311 0 0 0 0 SRX2750908 Unrestricted 0.0 Single_particle_sort 3300041871 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Cand. Thiomargarita magnifica 47 DOE Joint Genome Institute (JGI) 3300041871 Metagenome - Cell Enrichment spades v. 3.14.1 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 442564 454 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034511 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.PSCntrl.SYBR.02.K5 DOE Joint Genome Institute (JGI) 3300034511 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 1582763 1791 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032963 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July23.5000.01.D4 DOE Joint Genome Institute (JGI) 3300032963 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 43409932 42722 12 0 19 0 Unrestricted 0.0 Single_particle_sort 3300031407 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.Vis6.EtOH.1-fish+.2 DOE Joint Genome Institute (JGI) 3300031407 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 5172880 5358 4 0 9 0 Unrestricted 0.0 Single_particle_sort 3300020993 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera29 DOE Joint Genome Institute (JGI) 3300020993 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 7350503 7388 2 0 5 0 Unrestricted 0.0 Single_particle_sort 3300032841 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July16.5000.01.C4 DOE Joint Genome Institute (JGI) 3300032841 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 7089855 7443 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034825 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells PlantN RepA EcoBCT.PlantN.5000.1.E5 DOE Joint Genome Institute (JGI) 3300034825 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 15324627 17050 6 0 10 0 Unrestricted 0.0 Single_particle_sort 3300031267 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.Vis6.UnFx.1-neg.1 DOE Joint Genome Institute (JGI) 3300031267 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 4881190 5064 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300024211 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.I9 DOE Joint Genome Institute (JGI) 3300024211 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 3948195 4441 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034824 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells PlantN RepA EcoBCT.PlantN.5000.1.E4 DOE Joint Genome Institute (JGI) 3300034824 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 5897485 6692 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300032858 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July09.5000.02.C5 DOE Joint Genome Institute (JGI) 3300032858 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 8329799 8684 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300036304 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.1.J9 DOE Joint Genome Institute (JGI) 3300036304 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 6515588 6819 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034578 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.J3 DOE Joint Genome Institute (JGI) 3300034578 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 3192430 3406 1 0 1 0 SRX8394391 Unrestricted 0.0 Single_particle_sort 3300010651 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.F6.16S negative DOE Joint Genome Institute (JGI) 3300010651 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1278926 1325 0 0 1 0 SRX2750489 Unrestricted 0.0 Single_particle_sort 3300036206 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Santa Monica Basin, California, United States - ANME aggregate JGI_Orphan.7059.BNCT.2.N3 DOE Joint Genome Institute (JGI) 3300036206 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.7988 -118.6476 3937757 4395 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300033079 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep2 HSBNCT.N11.300.1.M11 DOE Joint Genome Institute (JGI) 3300033079 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2462138 2675 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034372 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep2 HSBNCT.FG11.5000.02.I5 DOE Joint Genome Institute (JGI) 3300034372 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 17871784 17943 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300017801 *Microbiome Permanent Draft Marine microbial communities from the Costa Rica Dome and surrounding waters Marine microbial communities from the Costa Rica Dome - N26 A3-1 mini metaG DOE Joint Genome Institute (JGI) 3300017801 Metagenome - Cell Enrichment MEGAHIT v. 1.0.6 Yes Yes msaito@whoi.edu Mak Saito No Environmental Aquatic Oceanic Marine Photic zone Seawater 0.8736 -97.0511 40365003 39667 20 0 22 0 SRX3375297 Unrestricted 0.0 Single_particle_sort 3300024143 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells of freshwater protists from Biology Centre CAS, Ceske Budejovice, Czech Republic - ZER3_1Amoeba_F19 DOE Joint Genome Institute (JGI) 3300024143 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Freshwater Unclassified enrichment culture 48.9774 14.4478 1363246 2154 0 1 0 1 Unrestricted 0.0 Single_particle_sort 3300036305 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.1.K7 DOE Joint Genome Institute (JGI) 3300036305 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 5575790 5833 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300047052 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.B5 DOE Joint Genome Institute (JGI) 3300047052 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 15761154 15825 2 0 9 0 Unrestricted 0.0 Single_particle_sort 3300020848 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera11 DOE Joint Genome Institute (JGI) 3300020848 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5055099 5096 0 0 2 0 Unrestricted 0.0 Single_particle_sort 3300047270 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_AV3_G3 DOE Joint Genome Institute (JGI) 3300047270 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 23098696 43167 22 0 26 0 Restricted 588.57 Single_particle_sort 3300033117 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep3 HSBNCT.N11.300.1.C13 DOE Joint Genome Institute (JGI) 3300033117 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 1335874 1472 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020854 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera58 DOE Joint Genome Institute (JGI) 3300020854 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5410989 5315 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034880 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - Total cells Plant RepB EcoBCT.Plant.5000.1.I4 DOE Joint Genome Institute (JGI) 3300034880 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 8160834 8454 5 0 7 0 Unrestricted 0.0 Single_particle_sort 3300041875 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Cand. Thiomargarita magnifica 60 DOE Joint Genome Institute (JGI) 3300041875 Metagenome - Cell Enrichment spades v. 3.14.1 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 2153965 2339 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020910 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera35 DOE Joint Genome Institute (JGI) 3300020910 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7957576 8197 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300005571 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis roots microbial communities from North Carolina, USA - Arabidopsis Cvi MF FACS sort 2 DOE Joint Genome Institute (JGI) 3300005571 Metagenome - Cell Enrichment MEGAHIT v. 0.2.0 Yes Yes scott.yourstone81@gmail.com, scott.yourstone81@gmail.com; dangl@email.unc.edu Scott Yourstone, Scott Yourstone; Jeff Dangl No Host-associated Plants Unclassified Roots Unclassified Arabidopsis roots 35.9077 -79.0508 12212218 50453 6 1 42 1 SRX2834396 Unrestricted 0.0 Single_particle_sort 3300047126 *Microbiome Permanent Draft Freshwater fungal communities from various locations Enriched cells from freshwater from Herbarium Pond, Ann Arbor, Michigan, United States - PSC124 Chytrid MDA DOE Joint Genome Institute (JGI) 3300047126 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes tyjames@umich.edu Timothy Y. James No Environmental Aquatic Pond Freshwater Unclassified Freshwater 42.237816 -83.730109 12008891 17962 1 1 1 1 Restricted 0.0 Single_particle_sort 3300034515 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.PSCntrl.SYBR.02.I9 DOE Joint Genome Institute (JGI) 3300034515 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 1577872 1822 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007701 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C67_wellD04 DOE Joint Genome Institute (JGI) 3300007701 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 25522 36 0 0 0 0 SRX3201344 Unrestricted 0.0 Single_particle_sort 3300020855 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera81 DOE Joint Genome Institute (JGI) 3300020855 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5019554 5498 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010570 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.I18.16S negative DOE Joint Genome Institute (JGI) 3300010570 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 797848 869 0 0 0 0 SRX2751559 Unrestricted 0.0 Single_particle_sort 3300034808 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells Soil RepC EcoBCT.Soil.5000.2.K6 DOE Joint Genome Institute (JGI) 3300034808 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 19301501 20165 7 0 9 0 Unrestricted 0.0 Single_particle_sort 3300034514 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.PSCntrl.SYBR.02.L7 DOE Joint Genome Institute (JGI) 3300034514 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 1609044 1874 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300041874 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Cand. Thiomargarita magnifica 59 DOE Joint Genome Institute (JGI) 3300041874 Metagenome - Cell Enrichment spades v. 3.14.1 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 11894478 11574 2 0 6 0 Unrestricted 0.0 Single_particle_sort 3300034210 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep2 HSBNCT.FG11.300.03.G11 DOE Joint Genome Institute (JGI) 3300034210 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 3755619 3621 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034962 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells Plant RepC EcoBCT.Plant.5000.1.K3 DOE Joint Genome Institute (JGI) 3300034962 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 17451425 19288 6 0 9 0 Unrestricted 0.0 Single_particle_sort 3300036691 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells N11 rep1 HSBNCT.N11.5000.01.F4 DOE Joint Genome Institute (JGI) 3300036691 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3921 4915100 5372 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300021532 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from agricultural soil in Iowa, United States - IA12soil_MG_GH6A(-) DOE Joint Genome Institute (JGI) 3300021532 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes aaron.wright@pnnl.gov; twoyke@lbl.gov Aaron Wright; Tanja Woyke No Environmental Terrestrial Agricultural land Soil Unclassified soil 41.9167 -93.75 7984449 9158 6 0 5 1 Unrestricted 0.0 Single_particle_sort 3300036328 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.J4 DOE Joint Genome Institute (JGI) 3300036328 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 6882483 7295 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034869 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells Plant RepA EcoBCT.Plant.5000.1.E4 DOE Joint Genome Institute (JGI) 3300034869 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 7213988 7387 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300007439 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D99_LAv2 DOE Joint Genome Institute (JGI) 3300007439 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 6525576 6154 5 0 5 0 SRX2944611 Unrestricted 0.0 Single_particle_sort 3300009260 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsB11-p2 DOE Joint Genome Institute (JGI) 3300009260 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 1870481 2394 0 0 0 0 SRX3205079 Unrestricted 0.0 Single_particle_sort 3300007411 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D17_H0v2 DOE Joint Genome Institute (JGI) 3300007411 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 1968166 1803 1 0 0 0 SRX2939891 Unrestricted 0.0 Single_particle_sort 3300039905 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - BONCATsort_Cellobiose_rep_3_18997events_18pcr DOE Joint Genome Institute (JGI) 3300039905 Metagenome - Cell Enrichment metaspades v. 3.13.0 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5326 -110.7972 6752421 17296 9 0 24 0 Unrestricted 123.83 Single_particle_sort 3300036301 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.1.H3 DOE Joint Genome Institute (JGI) 3300036301 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 5239864 5393 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300017805 *Microbiome Permanent Draft Marine microbial communities from the Costa Rica Dome and surrounding waters Marine microbial communities from the Costa Rica Dome - UW86 mini metaG DOE Joint Genome Institute (JGI) 3300017805 Metagenome - Cell Enrichment MEGAHIT v. 1.0.6 Yes Yes msaito@whoi.edu Mak Saito No Environmental Aquatic Oceanic Marine Photic zone Seawater 0.8736 -97.0511 42058924 54000 48 0 62 0 SRX3375924 Unrestricted 136.46 Single_particle_sort 3300010654 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.N12.16S negative DOE Joint Genome Institute (JGI) 3300010654 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1048461 1338 0 0 0 0 SRX2750996 Unrestricted 0.0 Single_particle_sort 3300032772 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep2 HSBNCT.T11.300.1.L11 DOE Joint Genome Institute (JGI) 3300032772 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 9058866 7872 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010446 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.D5.16S negative DOE Joint Genome Institute (JGI) 3300010446 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 55841 68 0 0 0 0 SRX2748701 Unrestricted 0.0 Single_particle_sort 3300017804 *Microbiome Permanent Draft Marine microbial communities from the Costa Rica Dome and surrounding waters Marine microbial communities from the Costa Rica Dome - N26 B7-1 mini metaG DOE Joint Genome Institute (JGI) 3300017804 Metagenome - Cell Enrichment MEGAHIT v. 1.0.6 Yes Yes msaito@whoi.edu Mak Saito No Environmental Aquatic Oceanic Marine Photic zone Seawater 0.8736 -97.0511 43501001 45667 33 2 35 3 SRX3375698 Unrestricted 0.0 Single_particle_sort 3300007687 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C21_wellD01 DOE Joint Genome Institute (JGI) 3300007687 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 4956 5 0 0 0 0 SRX3201637 Unrestricted 0.0 Single_particle_sort 3300010655 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.E13.16S negative DOE Joint Genome Institute (JGI) 3300010655 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1061165 1340 0 0 0 0 SRX2751000 Unrestricted 0.0 Single_particle_sort 3300035282 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_H3 DOE Joint Genome Institute (JGI) 3300035282 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 1327791 1325 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300024215 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.G3 DOE Joint Genome Institute (JGI) 3300024215 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 7559492 8444 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036193 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Santa Monica Basin, California, United States - ANME aggregate JGI_Orphan.7059.BNCT.2.L4 DOE Joint Genome Institute (JGI) 3300036193 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.7988 -118.6476 942498 1101 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300007478 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D07_HANv2 DOE Joint Genome Institute (JGI) 3300007478 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 26249939 26384 8 0 17 0 SRX2939167 Unrestricted 0.0 Single_particle_sort 3300050452 *Microbiome Permanent Draft Freshwater fungal communities from various locations Enriched cells from freshwater from Lake Walsh, Michigan, USA - MicG_I DOE Joint Genome Institute (JGI) 3300050452 Metagenome - Cell Enrichment spades v. 3.15.3 released based on JGI ITS No Yes tyjames@umich.edu Timothy Y. James No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.337583 -84.07975 2248227 2050 0 1 0 1 Restricted 0.0 Single_particle_sort 3300049409 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.I10 DOE Joint Genome Institute (JGI) 3300049409 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 19128576 21229 12 0 13 0 Unrestricted 0.0 Single_particle_sort 3300038929 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Sandy's Spring West, Nevada, USA - SSWsed.3.2015 0414 MDM2 SSWsed p3 16S.C15.double-peak DOE Joint Genome Institute (JGI) 3300038929 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 40.653 -119.3749 1101386 1270 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300032836 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep3 HSBNCT.FGM.300.1.D15 DOE Joint Genome Institute (JGI) 3300032836 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 5838854 5379 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300033083 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep3 HSBNCT.N11.300.1.K15 DOE Joint Genome Institute (JGI) 3300033083 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 4091059 4306 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020633 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera61 DOE Joint Genome Institute (JGI) 3300020633 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 4053943 4068 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034821 *Microbiome Permanent Draft Enriched cells from salt marsh in Woods Hole, Massachusetts, USA - Chromatiaceae bacterium bf-1 Enriched cells from salt marsh in Woods Hole, Massachusetts, USA - Chromatiaceae bacterium bf-1 California Institute of Technology 3300034821 Metagenome - Cell Enrichment Kiki v. 1 released by JGI data releasing policy No Yes graysemail@gmail.com Grayson Chadwick No Environmental Aquatic Intertidal zone Marine Salt marsh salt marsh 41.52972 -70.670246 3602444 3172 1 0 1 0 0.0 Single_particle_sort 3300024117 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.E10 DOE Joint Genome Institute (JGI) 3300024117 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 5357733 6027 3 0 0 0 Unrestricted 0.0 Single_particle_sort 3300024214 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.J5 DOE Joint Genome Institute (JGI) 3300024214 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 6997672 7676 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300024106 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.C10 DOE Joint Genome Institute (JGI) 3300024106 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 2180592 2482 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010650 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.L19.16S negative DOE Joint Genome Institute (JGI) 3300010650 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1068302 1323 0 0 0 0 SRX2750450 Unrestricted 0.0 Single_particle_sort 3300020759 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera11 DOE Joint Genome Institute (JGI) 3300020759 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 6944056 7142 5 0 3 0 Unrestricted 0.0 Single_particle_sort 3300017888 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-4_H3 DOE Joint Genome Institute (JGI) 3300017888 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 6.08 5537326 5896 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300017800 *Microbiome Permanent Draft Marine microbial communities from the Costa Rica Dome and surrounding waters Marine microbial communities from the Costa Rica Dome - N5 B1 mini metaG DOE Joint Genome Institute (JGI) 3300017800 Metagenome - Cell Enrichment MEGAHIT v. 1.0.6 Yes Yes msaito@whoi.edu Mak Saito No Environmental Aquatic Oceanic Marine Photic zone Seawater 0.8736 -97.0511 37114523 43374 19 0 22 0 SRX3375203 Unrestricted 0.0 Single_particle_sort 3300020787 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera85 DOE Joint Genome Institute (JGI) 3300020787 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 9547155 9562 2 0 5 0 Unrestricted 0.0 Single_particle_sort 3300036243 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.J9 DOE Joint Genome Institute (JGI) 3300036243 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 2119710 2248 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010667 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.N20.16S negative DOE Joint Genome Institute (JGI) 3300010667 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1127834 1405 0 0 0 0 SRX2751766 Unrestricted 0.0 Single_particle_sort 3300031338 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.CF.UnFx.1-fish+.1 DOE Joint Genome Institute (JGI) 3300031338 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 11697228 12510 6 0 8 0 Unrestricted 0.0 Single_particle_sort 3300020628 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera63 DOE Joint Genome Institute (JGI) 3300020628 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 12974514 12854 3 0 6 0 Unrestricted 0.0 Single_particle_sort 3300037426 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - BONCATsort_N2_100%_rep_3_26444events_18pcr DOE Joint Genome Institute (JGI) 3300037426 Metagenome - Cell Enrichment metaspades v. 3.13.0 Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5326 -110.7972 14128334 33128 22 0 34 0 Unrestricted 146.36 Single_particle_sort 3300021198 *Microbiome Finished Water metavirome from crystallizer in the solar salterns in Santa Pola Enriched hypersaline water viral communities from crystillizer pond CR30 in Solar Salterns, Santa Pola, Alicante, Spain - clone 2F6 Genome Express 3300021198 Metagenome - Cell Enrichment Seqman application of the Lasergene software (DNASTAR Corporation) released by JGI data releasing policy No Yes emnabouhajja@gmail.com Emna Bouhajja No Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Unclassified hypersaline water 38.1922 -0.5918 1418 4 0 0 0 0 0.0 Single_particle_sort 3300034765 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Benguela upwelling system, South Atlantic Ocean - Thioflexothrix JNN161YC_Rep1_CE DOE Joint Genome Institute (JGI) 3300034765 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Oceanic Marine Sediment sediment -19.9993 12.6791 1404359 1554 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300024210 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.I6 DOE Joint Genome Institute (JGI) 3300024210 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 5347914 5845 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034764 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Benguela upwelling system, South Atlantic Ocean - Beggiatoaceae JNN162YC_Rep4_CE DOE Joint Genome Institute (JGI) 3300034764 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -23.0 14.0692 328108 283 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300036139 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_E7 DOE Joint Genome Institute (JGI) 3300036139 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 164406 191 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300036222 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.H7 DOE Joint Genome Institute (JGI) 3300036222 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 9343752 9506 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020914 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera41 DOE Joint Genome Institute (JGI) 3300020914 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 8664469 8714 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010575 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.D10.16S negative DOE Joint Genome Institute (JGI) 3300010575 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 802277 911 0 0 0 0 SRX2750807 Unrestricted 0.0 Single_particle_sort 3300034483 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.SSM.Mag.03.I3 DOE Joint Genome Institute (JGI) 3300034483 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 7606607 5110 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020850 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera15 DOE Joint Genome Institute (JGI) 3300020850 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 4953581 5124 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034884 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells Plant RepC EcoBCT.Plant.5000.1.K6 DOE Joint Genome Institute (JGI) 3300034884 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 8764040 9466 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300020915 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera37 DOE Joint Genome Institute (JGI) 3300020915 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 8435242 8734 1 0 4 0 Unrestricted 0.0 Single_particle_sort 3300023765 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells of freshwater protists from Biology Centre CAS, Ceske Budejovice, Czech Republic - ZER3_1Amoeba_J19 DOE Joint Genome Institute (JGI) 3300023765 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Freshwater Unclassified enrichment culture 48.9774 14.4478 126923 223 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300032840 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July16.5000.01.C7 DOE Joint Genome Institute (JGI) 3300032840 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 6262586 6701 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034510 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.PSCntrl.SYBR.02.J5 DOE Joint Genome Institute (JGI) 3300034510 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 1527415 1717 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007579 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C15_HANv2 DOE Joint Genome Institute (JGI) 3300007579 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 56944579 58803 17 0 34 0 SRX2939889 Unrestricted 0.0 Single_particle_sort 3300010574 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.K11.16S negative DOE Joint Genome Institute (JGI) 3300010574 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 845148 910 0 0 0 0 SRX2750901 Unrestricted 0.0 Single_particle_sort 3300034885 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - Total cells Plant RepC EcoBCT.Plant.5000.1.L3 DOE Joint Genome Institute (JGI) 3300034885 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 16959446 18379 7 0 7 0 Unrestricted 0.0 Single_particle_sort 3300049386 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.H4 DOE Joint Genome Institute (JGI) 3300049386 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 43603445 44894 25 0 30 0 Unrestricted 0.0 Single_particle_sort 3300014361 *Microbiome Permanent Draft Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India Lab enriched petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India - point GR3 NA 85 Life Technologies 3300014361 Metagenome - Cell Enrichment MetaVelvet v1.2.01 released by JGI data releasing policy No Yes sarkar.jayeeta12@gmail.com Jayeeta Sarkar No Engineered Bioremediation Unclassified Hydrocarbon Unclassified petroleum sludge 26.18471 91.80725 75723701 230278 197 5 328 8 SRX2512230 0.0 Single_particle_sort 3300007493 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D05_HANv2 DOE Joint Genome Institute (JGI) 3300007493 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 50341518 49629 14 0 28 0 SRX2944526 Unrestricted 0.0 Single_particle_sort 3300034316 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells N11 rep1 HSBNCT.N11.5000.01.F5 DOE Joint Genome Institute (JGI) 3300034316 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3921 4946336 5534 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034214 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep3 HSBNCT.FG11.300.03.K14 DOE Joint Genome Institute (JGI) 3300034214 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 11001119 10646 3 0 5 0 Unrestricted 0.0 Single_particle_sort 3300028683 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Erie, Ontario, Canada - control ER10 DOE Joint Genome Institute (JGI) 3300028683 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Engineered Industrial production Sheath fluid Chemical products Unclassified sheath fluid 37.9313 -122.0217 3126500 5923 3 0 4 0 Unrestricted 34.02 Single_particle_sort 3300020867 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera30 DOE Joint Genome Institute (JGI) 3300020867 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5833486 6071 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300009264 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsC09-p2 DOE Joint Genome Institute (JGI) 3300009264 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 2171735 2662 0 0 0 0 SRX3205077 Unrestricted 0.0 Single_particle_sort 3300036333 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.L5 DOE Joint Genome Institute (JGI) 3300036333 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 5771314 6017 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034215 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep3 HSBNCT.FG11.300.03.K15 DOE Joint Genome Institute (JGI) 3300034215 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 6583084 6587 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300033106 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep2 HSBNCT.N11.300.1.E11 DOE Joint Genome Institute (JGI) 3300033106 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 4167451 4515 4 0 3 0 Unrestricted 0.0 Single_particle_sort 3300036115 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_H3 DOE Joint Genome Institute (JGI) 3300036115 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 1335337 1394 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300017795 *Microbiome Permanent Draft Marine microbial communities from the Costa Rica Dome and surrounding waters Marine microbial communities from the Costa Rica Dome - UW105 mini metaG DOE Joint Genome Institute (JGI) 3300017795 Metagenome - Cell Enrichment MEGAHIT v. 1.0.6 Yes Yes msaito@whoi.edu Mak Saito No Environmental Aquatic Oceanic Marine Photic zone Seawater 0.8736 -97.0511 36731755 38125 34 0 64 0 SRX3375927 Unrestricted 192.55 Single_particle_sort 3300036217 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.C8 DOE Joint Genome Institute (JGI) 3300036217 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 2424847 2674 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300036114 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_G3 DOE Joint Genome Institute (JGI) 3300036114 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 477771 512 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300024023 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.F4 DOE Joint Genome Institute (JGI) 3300024023 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 7184537 7662 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300009229 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-Cons-F03-p2 DOE Joint Genome Institute (JGI) 3300009229 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 719124 956 0 0 0 0 SRX3205149 Unrestricted 0.0 Single_particle_sort 3300034761 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Benguela upwelling system, South Atlantic Ocean - Ca. Maribeggiatoa JNN162YC_Rep1_CE DOE Joint Genome Institute (JGI) 3300034761 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -23.0 14.0692 128018 139 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300007556 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C27_wellE03 DOE Joint Genome Institute (JGI) 3300007556 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 1283947 1577 4 0 1 0 SRX3200311 Unrestricted 0.0 Single_particle_sort 3300017794 *Microbiome Permanent Draft Marine microbial communities from the Costa Rica Dome and surrounding waters Marine microbial communities from the Costa Rica Dome - GEYO mini metaG DOE Joint Genome Institute (JGI) 3300017794 Metagenome - Cell Enrichment MEGAHIT v. 1.0.6 Yes Yes msaito@whoi.edu Mak Saito No Environmental Aquatic Oceanic Marine Photic zone Seawater 0.8736 -97.0511 24682443 35798 42 4 70 3 SRX3375923 Unrestricted 327.02 Single_particle_sort 3300031969 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs Polaribacter B3 DOE Joint Genome Institute (JGI) 3300031969 Metagenome - Cell Enrichment spades v. 3.12.0 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 429301 530 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300036300 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.1.G8 DOE Joint Genome Institute (JGI) 3300036300 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 2792479 3036 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010518 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.H18.16S negative DOE Joint Genome Institute (JGI) 3300010518 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 469314 596 0 0 0 0 SRX2749601 Unrestricted 0.0 Single_particle_sort 3300020978 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera20 DOE Joint Genome Institute (JGI) 3300020978 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 6359420 6525 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300033042 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep1 HSBNCT.N11.300.1.N5 DOE Joint Genome Institute (JGI) 3300033042 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2027982 2334 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010632 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.I8.16S negative DOE Joint Genome Institute (JGI) 3300010632 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 956402 1208 0 0 0 0 SRX2750704 Unrestricted 0.0 Single_particle_sort 3300047218 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_HPG3_E3 DOE Joint Genome Institute (JGI) 3300047218 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 44269890 90930 28 0 63 1 Restricted 75.47 Single_particle_sort 3300034239 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep3 HSBNCT.FG11.300.03.J14 DOE Joint Genome Institute (JGI) 3300034239 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 5262742 5275 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300036690 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells N11 rep1 HSBNCT.N11.5000.01.F3 DOE Joint Genome Institute (JGI) 3300036690 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3921 6206557 6717 3 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007583 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C27_wellE03 DOE Joint Genome Institute (JGI) 3300007583 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 14638 25 0 0 0 0 SRX3202112 Unrestricted 0.0 Single_particle_sort 3300034211 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep2 HSBNCT.FG11.300.03.N8 DOE Joint Genome Institute (JGI) 3300034211 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 7312981 7209 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020776 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera43 DOE Joint Genome Institute (JGI) 3300020776 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 8502988 8858 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010452 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.H20.16S negative DOE Joint Genome Institute (JGI) 3300010452 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 103138 122 0 0 0 0 SRX2749605 Unrestricted 0.0 Single_particle_sort 3300014365 *Microbiome Permanent Draft Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India Lab enriched petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India - point GR3 NA 77 Life Technologies 3300014365 Metagenome - Cell Enrichment MetaVelvet v1.2.01 released by JGI data releasing policy No Yes sarkar.jayeeta12@gmail.com Jayeeta Sarkar No Engineered Bioremediation Unclassified Hydrocarbon Unclassified petroleum sludge 26.18471 91.80725 91854991 299128 231 4 391 12 SRX2512230 0.0 Single_particle_sort 3300032482 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep3 HSBNCT.T11.300.1.C15 DOE Joint Genome Institute (JGI) 3300032482 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 1994808 2082 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007410 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D69_L0v2 DOE Joint Genome Institute (JGI) 3300007410 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 1931953 1795 2 0 2 0 SRX2939203 Unrestricted 0.0 Single_particle_sort 3300034798 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - Total cells Soil RepA EcoBCT.Soil.5000.2.F6 DOE Joint Genome Institute (JGI) 3300034798 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 7714484 8675 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020911 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera38 DOE Joint Genome Institute (JGI) 3300020911 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7933337 8467 5 0 3 0 Unrestricted 0.0 Single_particle_sort 3300007700 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C49_wellA04 DOE Joint Genome Institute (JGI) 3300007700 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 15694 31 0 0 0 0 SRX3201140 Unrestricted 0.0 Single_particle_sort 3300047271 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_HPG1_B3 DOE Joint Genome Institute (JGI) 3300047271 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 24378020 45663 19 0 53 0 Restricted 70.83 Single_particle_sort 3300020939 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera27 DOE Joint Genome Institute (JGI) 3300020939 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 11660481 11721 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300033023 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep3 HSBNCT.N11.300.1.C15 DOE Joint Genome Institute (JGI) 3300033023 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2889799 2949 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300031383 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.CF.EtOH.1-dapi+.1 DOE Joint Genome Institute (JGI) 3300031383 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 26947749 28362 9 0 16 0 Unrestricted 0.0 Single_particle_sort 3300034881 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - Total cells Plant RepB EcoBCT.Plant.5000.1.I5 DOE Joint Genome Institute (JGI) 3300034881 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 10039517 10745 4 0 7 0 Unrestricted 0.0 Single_particle_sort 3300021007 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera35 DOE Joint Genome Institute (JGI) 3300021007 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 8891577 9158 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300032971 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep3 HSBNCT.FGM.300.1.E13 DOE Joint Genome Institute (JGI) 3300032971 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 7911255 7655 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300020832 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera25 DOE Joint Genome Institute (JGI) 3300020832 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 3676329 3847 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300046953 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.L5 DOE Joint Genome Institute (JGI) 3300046953 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 20128095 20178 5 0 9 0 Unrestricted 0.0 Single_particle_sort 3300038882 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - PDU D8.9.MDM2 PDU D8 p9 16S.C22.double-seq DOE Joint Genome Institute (JGI) 3300038882 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 1074667 1176 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010571 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.E13.16S negative DOE Joint Genome Institute (JGI) 3300010571 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 740297 873 2 0 2 0 SRX2750338 Unrestricted 0.0 Single_particle_sort 3300017796 *Microbiome Permanent Draft Marine microbial communities from the Costa Rica Dome and surrounding waters Marine microbial communities from the Costa Rica Dome - UW140 mini metaG DOE Joint Genome Institute (JGI) 3300017796 Metagenome - Cell Enrichment MEGAHIT v. 1.0.6 Yes Yes msaito@whoi.edu Mak Saito No Environmental Aquatic Oceanic Marine Photic zone Seawater 0.8736 -97.0511 34370085 43123 35 0 50 0 SRX3376050 Unrestricted 224.39 Single_particle_sort 3300010957 *Microbiome Permanent Draft Mouse host associated microbial communities from Vienna, Austria Mouse cecal microbial communities from Vienna, Austria - N-Acetylglucosamine amended D2O_June DOE Joint Genome Institute (JGI) 3300010957 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes romans@mit.edu Roman Stocker No Host-associated Mammals Large intestine Digestive system Cecum Mouse cecum 48.2 16.37 99321655 96962 30 0 46 0 SRX2954896 Unrestricted 0.0 Single_particle_sort 3300034877 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells Plant RepB EcoBCT.Plant.5000.1.H4 DOE Joint Genome Institute (JGI) 3300034877 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 11919224 13388 4 0 8 0 Unrestricted 0.0 Single_particle_sort 3300020842 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera79 DOE Joint Genome Institute (JGI) 3300020842 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 4685788 4807 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010559 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.J19.Thermotogae DOE Joint Genome Institute (JGI) 3300010559 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 710412 813 0 0 1 0 SRX2751765 Unrestricted 0.0 Single_particle_sort 3300036116 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_C4 DOE Joint Genome Institute (JGI) 3300036116 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 146121 175 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010587 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.D12.16S negative DOE Joint Genome Institute (JGI) 3300010587 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 869130 963 0 0 0 0 SRX2749294 Unrestricted 0.0 Single_particle_sort 3300010623 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.L12.16S negative DOE Joint Genome Institute (JGI) 3300010623 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1071063 1158 0 0 0 0 SRX2750337 Unrestricted 0.0 Single_particle_sort 3300047259 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_AV1_G3 DOE Joint Genome Institute (JGI) 3300047259 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 33235992 85778 8 0 25 0 Restricted 184.08 Single_particle_sort 3300032852 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.Aug13.5000.01.C4 DOE Joint Genome Institute (JGI) 3300032852 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 3183334 3255 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300022710 *Microbiome Permanent Draft PaintPots Mound Soils and Cell Enrichments Soil bacterial communities from Paint Pots, Kootenay National Park, BC, Canada - NM25_DC University of Calgary 3300022710 Metagenome - Cell Enrichment SPAdes v. 3.9 released by JGI data releasing policy Yes Yes dunfield.bio@gmail.com; pfdunfie@ucalgary.ca Dunfield Laboratory; Peter Dunfield No Environmental Terrestrial Sand Soil Forest soil soil 50.9769 -115.9592 184368678 362867 147 2 182 0 0.0 Single_particle_sort 3300032987 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep1 HSBNCT.FGM.300.1.D5 DOE Joint Genome Institute (JGI) 3300032987 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 3847914 3649 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300010960 *Microbiome Permanent Draft Mouse host associated microbial communities from Vienna, Austria Mouse cecal microbial communities from Vienna, Austria - N-Acetylglucosamine amended D2O_March DOE Joint Genome Institute (JGI) 3300010960 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes romans@mit.edu Roman Stocker No Host-associated Mammals Large intestine Digestive system Cecum Mouse cecum 48.2 16.37 193090828 199523 76 0 85 0 SRX2954893 Unrestricted 0.0 Single_particle_sort 3300024032 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.I3 DOE Joint Genome Institute (JGI) 3300024032 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 12002217 13320 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300017843 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-2_I3 DOE Joint Genome Institute (JGI) 3300017843 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 6.39 31100 53 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034249 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep2 HSBNCT.FG11.300.03.H10 DOE Joint Genome Institute (JGI) 3300034249 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 3610025 3251 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300036200 *Microbiome Permanent Draft Marine microalgae viral communities from raceway pond in Palavas-les-Flots, France Enriched cells of marine microalgae from raceway pond in Palavas-les-Flots, France - 23.10.P2 MEGA virome DOE Joint Genome Institute (JGI) 3300036200 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes guillaume.blanc@mio.osupytheas.fr Guillaume Blanc No Host-associated Algae Unclassified Microalgae Unclassified marine microalgae 43.5198 3.9073 5359767 6142 2 0 3 1 Unrestricted 0.0 Single_particle_sort 3300033101 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep3 HSBNCT.N11.300.1.F15 DOE Joint Genome Institute (JGI) 3300033101 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3210148 3360 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020775 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera86 DOE Joint Genome Institute (JGI) 3300020775 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 8947968 8762 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300033032 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep3 HSBNCT.FGM.300.1.N15 DOE Joint Genome Institute (JGI) 3300033032 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 21598801 18835 5 0 4 0 Unrestricted 0.0 Single_particle_sort 3300010642 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.F12.16S negative DOE Joint Genome Institute (JGI) 3300010642 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1010210 1261 0 0 0 0 SRX2750907 Unrestricted 0.0 Single_particle_sort 3300005120 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME D04B24 DOE Joint Genome Institute (JGI) 3300005120 Metagenome - Cell Enrichment spades v. 3.0.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 4949798 4823 1 0 1 0 SRX2482145 Unrestricted 0.0 Single_particle_sort 3300023995 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.C6 DOE Joint Genome Institute (JGI) 3300023995 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 2113499 2220 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300020774 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera64 DOE Joint Genome Institute (JGI) 3300020774 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 8548424 8580 4 0 3 0 Unrestricted 0.0 Single_particle_sort 3300021010 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera40 DOE Joint Genome Institute (JGI) 3300021010 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 9198312 9311 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300024199 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells of freshwater protists from Biology Centre CAS, Ceske Budejovice, Czech Republic - JAMX8_100Endo3_G3 DOE Joint Genome Institute (JGI) 3300024199 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Freshwater Unclassified enrichment culture 48.9774 14.4478 1693641 1840 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300014366 *Microbiome Permanent Draft Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India Lab enriched petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India - point GR3 NA 21_Spades Life Technologies 3300014366 Metagenome - Cell Enrichment Spades v3.10.1 released by JGI data releasing policy No Yes sarkar.jayeeta12@gmail.com Jayeeta Sarkar No Engineered Bioremediation Unclassified Hydrocarbon Unclassified petroleum sludge 26.18471 91.80725 137099397 299475 29 2 74 4 SRX2512230 0.0 Single_particle_sort 3300020823 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera7 DOE Joint Genome Institute (JGI) 3300020823 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 3349678 3179 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034311 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells T11 rep2 HSBNCT.T11.5000.01.H6 DOE Joint Genome Institute (JGI) 3300034311 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3919 8313687 8521 6 0 8 0 Unrestricted 0.0 Single_particle_sort 3300029344 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Erie, Ontario, Canada - control ER10 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300029344 Metagenome - Cell Enrichment SPAdes v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Engineered Industrial production Sheath fluid Chemical products Unclassified sheath fluid 37.9313 -122.0217 2271550 2970 1 0 0 0 Unrestricted 35.93 Single_particle_sort 3300035149 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Bay of Concepcion, South Pacific Ocean - Ca. Thiopilula JBCH1603RB1_Rep1_CE DOE Joint Genome Institute (JGI) 3300035149 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -36.51 -73.125 4488038 4612 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300032803 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep1 HSBNCT.T11.300.1.E5 DOE Joint Genome Institute (JGI) 3300032803 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 8200562 7912 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300007407 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C27_H0v2 DOE Joint Genome Institute (JGI) 3300007407 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 1556215 1427 1 1 1 0 SRX2937031 Unrestricted 0.0 Single_particle_sort 3300010440 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.F7.16S negative DOE Joint Genome Institute (JGI) 3300010440 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 73530 82 0 0 0 0 SRX2748732 Unrestricted 0.0 Single_particle_sort 3300034454 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.I3 DOE Joint Genome Institute (JGI) 3300034454 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 1497678 1680 0 0 0 0 SRX8389314 Unrestricted 0.0 Single_particle_sort 3300034853 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells SoilN RepB EcoBCT.SoilN.5000.1.H3 DOE Joint Genome Institute (JGI) 3300034853 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 17099611 16490 5 0 8 0 Unrestricted 0.0 Single_particle_sort 3300024050 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities from Utah, United States - BONCAT_SYTO_Terrestrial_sediment - 3 DOE Joint Genome Institute (JGI) 3300024050 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 161732149 467228 176 0 267 0 Unrestricted 17.75 Single_particle_sort 3300032573 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep3 HSBNCT.T11.300.1.L13 DOE Joint Genome Institute (JGI) 3300032573 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 4535756 4212 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036343 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.N7 DOE Joint Genome Institute (JGI) 3300036343 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 5227219 5628 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007472 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C41_LAv2 DOE Joint Genome Institute (JGI) 3300007472 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 19301535 20198 5 0 13 0 SRX2937957 Unrestricted 0.0 Single_particle_sort 3300038899 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.1.2015 0410 MDM2 LHC4 sed p1 16S.M21.double-peak DOE Joint Genome Institute (JGI) 3300038899 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 1739321 2033 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300024207 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.J12 DOE Joint Genome Institute (JGI) 3300024207 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 3076271 3439 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034766 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Benguela upwelling system, South Atlantic Ocean - Thioflexothrix JNN161YC_Rep2_CE DOE Joint Genome Institute (JGI) 3300034766 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Oceanic Marine Sediment sediment -19.9993 12.6791 627234 813 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300032830 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep2 HSBNCT.FGM.300.1.M10 DOE Joint Genome Institute (JGI) 3300032830 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 11782087 10501 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300037425 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - BONCATsort_Glycine_rep_1_49595events_18pcr DOE Joint Genome Institute (JGI) 3300037425 Metagenome - Cell Enrichment metaspades v. 3.13.0 Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5326 -110.7972 13245082 29485 25 0 29 0 Unrestricted 266.0 Single_particle_sort 3300032778 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.June20.5000.01.C8 DOE Joint Genome Institute (JGI) 3300032778 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 18040051 18651 5 0 6 0 Unrestricted 0.0 Single_particle_sort 3300010497 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.C5.16S negative DOE Joint Genome Institute (JGI) 3300010497 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 342031 459 0 0 0 0 SRX2750482 Unrestricted 0.0 Single_particle_sort 3300010576 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.F19.16S negative DOE Joint Genome Institute (JGI) 3300010576 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 818436 913 0 0 0 0 SRX2749600 Unrestricted 0.0 Single_particle_sort 3300036322 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.F5 DOE Joint Genome Institute (JGI) 3300036322 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 6770934 7432 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034886 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - Total cells Plant RepC EcoBCT.Plant.5000.1.L4 DOE Joint Genome Institute (JGI) 3300034886 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 17812882 18175 8 0 9 0 Unrestricted 0.0 Single_particle_sort 3300021538 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from gastrointestinal tract of the lab mouse from Pacific Northwest National Laboratory (PNNL), Richland, Washington, United States - LIM_E_Water_Pos DOE Joint Genome Institute (JGI) 3300021538 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov; aaron.wright@pnnl.gov Tanja Woyke; Aaron Wright No Host-associated Mammals Unclassified Digestive system Unclassified gastrointestinal tract 46.0 -119.0 13969936 16515 6 0 10 0 Unrestricted 0.0 Single_particle_sort 3300031348 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.Vis6.UnFx.1-fish+.2 DOE Joint Genome Institute (JGI) 3300031348 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 6920888 7715 9 0 8 0 Unrestricted 0.0 Single_particle_sort 3300020916 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera45 DOE Joint Genome Institute (JGI) 3300020916 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 8378706 8796 1 0 3 0 Unrestricted 0.0 Single_particle_sort 3300036233 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_D9 DOE Joint Genome Institute (JGI) 3300036233 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 182155 226 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300033104 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep2 HSBNCT.N11.300.1.D8 DOE Joint Genome Institute (JGI) 3300033104 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3030653 3310 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300049385 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.J4 DOE Joint Genome Institute (JGI) 3300049385 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 40619542 42208 25 0 35 0 Unrestricted 0.0 Single_particle_sort 3300009266 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsF09-p3 DOE Joint Genome Institute (JGI) 3300009266 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 2509149 2836 0 0 0 0 SRX3205399 Unrestricted 0.0 Single_particle_sort 3300034802 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells Soil RepB EcoBCT.Soil.5000.2.H6 DOE Joint Genome Institute (JGI) 3300034802 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 12945699 14135 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034315 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells T11 rep3 HSBNCT.T11.5000.01.L5 DOE Joint Genome Institute (JGI) 3300034315 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3919 18163561 17285 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300034216 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep3 HSBNCT.FG11.300.03.K16 DOE Joint Genome Institute (JGI) 3300034216 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 10523862 9859 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300031439 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.Vis6.EtOH.1-dapi+.3 DOE Joint Genome Institute (JGI) 3300031439 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 19947972 21124 12 0 18 0 Unrestricted 0.0 Single_particle_sort 3300020771 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera4 DOE Joint Genome Institute (JGI) 3300020771 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 8597329 8401 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300033105 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep1 HSBNCT.N11.300.1.E3 DOE Joint Genome Institute (JGI) 3300033105 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2260516 2412 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034314 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells T11 rep3 HSBNCT.T11.5000.01.K4 DOE Joint Genome Institute (JGI) 3300034314 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3919 7926428 7920 6 0 7 0 Unrestricted 0.0 Single_particle_sort 3300034507 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.PSCntrl.SYBR.02.J4 DOE Joint Genome Institute (JGI) 3300034507 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 721122 810 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300049384 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.G4 DOE Joint Genome Institute (JGI) 3300049384 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 45026000 45526 18 0 28 0 Unrestricted 0.0 Single_particle_sort 3300034909 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_L3 DOE Joint Genome Institute (JGI) 3300034909 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 1504636 1614 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010457 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.H14.16S negative DOE Joint Genome Institute (JGI) 3300010457 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 141330 195 0 0 1 0 SRX2749418 Unrestricted 0.0 Single_particle_sort 3300007485 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D02_HANv2 DOE Joint Genome Institute (JGI) 3300007485 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 35779819 36344 12 0 20 0 SRX2939123 Unrestricted 0.0 Single_particle_sort 3300028695 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Superior, Ontario, Canada - SU02.SRF.Total.D5 DOE Joint Genome Institute (JGI) 3300028695 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.3605 -85.6205 22122152 49235 12 0 13 0 Unrestricted 102.91 Single_particle_sort 3300021453 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States - Total_DNA_B DOE Joint Genome Institute (JGI) 3300021453 Metagenome - Cell Enrichment spades v. 3.11.1-check Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 49172498 137208 150 2 224 2 Unrestricted 18.93 Single_particle_sort 3300019106 *Microbiome Permanent Draft Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India Lab enriched petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India - point GR3 NA Spades_99 Life Technologies 3300019106 Metagenome - Cell Enrichment SPAdes 3.10.1 released by JGI data releasing policy No Yes sarkar.jayeeta12@gmail.com Jayeeta Sarkar No Engineered Bioremediation Unclassified Hydrocarbon Unclassified petroleum sludge 26.18471 91.80725 146774931 290504 131 1 163 2 SRX2512230 0.0 Single_particle_sort 3300007484 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D34_HAv2 DOE Joint Genome Institute (JGI) 3300007484 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 34758197 34340 12 0 19 0 SRX2939892 Unrestricted 0.0 Single_particle_sort 3300037383 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - BONCATsort_HPG_rep_3_89906events_18pcr DOE Joint Genome Institute (JGI) 3300037383 Metagenome - Cell Enrichment metaspades v. 3.13.0 Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5326 -110.7972 50371463 125538 70 10 123 8 Unrestricted 533.92 Single_particle_sort 3300010489 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.B17.16S negative DOE Joint Genome Institute (JGI) 3300010489 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 338011 426 0 0 0 0 SRX2749506 Unrestricted 0.0 Single_particle_sort 3300028694 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Superior, Ontario, Canada - SU02.DCL.Total.D7 DOE Joint Genome Institute (JGI) 3300028694 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.3605 -85.6205 21949013 47492 10 0 9 0 Unrestricted 85.39 Single_particle_sort 3300010460 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.N7.16S negative DOE Joint Genome Institute (JGI) 3300010460 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 217546 244 0 0 0 0 SRX2748780 Unrestricted 0.0 Single_particle_sort 3300034495 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.SSM.Mag.03.J10 DOE Joint Genome Institute (JGI) 3300034495 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 9072788 6311 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034581 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.K3 DOE Joint Genome Institute (JGI) 3300034581 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 3030627 3248 1 0 1 0 SRX8394453 Unrestricted 0.0 Single_particle_sort 3300020837 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera41 DOE Joint Genome Institute (JGI) 3300020837 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 4319316 4509 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300038887 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring water in Sandy's Spring West, Nevada, USA - SSWTFF.3.2015 0414 MDM2 SSWTFF p3 16S.I18.double-seq DOE Joint Genome Institute (JGI) 3300038887 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring water 40.653 -119.3749 479485 579 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300021002 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera16 DOE Joint Genome Institute (JGI) 3300021002 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 8077346 7999 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034494 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.SSM.Mag.03.J8 DOE Joint Genome Institute (JGI) 3300034494 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 8403837 5942 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034893 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - Total cells Soil RepA EcoBCT.Soil.5000.2.F4 DOE Joint Genome Institute (JGI) 3300034893 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 11503430 13005 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300017870 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-4_G3 DOE Joint Genome Institute (JGI) 3300017870 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 6.08 5727346 6049 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020618 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera66 DOE Joint Genome Institute (JGI) 3300020618 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 8622723 8394 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300033090 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep1 HSBNCT.N11.300.1.N6 DOE Joint Genome Institute (JGI) 3300033090 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2182561 2389 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020925 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera69 DOE Joint Genome Institute (JGI) 3300020925 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 9031774 9613 4 0 6 0 Unrestricted 0.0 Single_particle_sort 3300009246 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsC06-p2 DOE Joint Genome Institute (JGI) 3300009246 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 1257873 1619 0 0 0 0 SRX3205076 Unrestricted 0.0 Single_particle_sort 3300007568 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C13_wellC03 DOE Joint Genome Institute (JGI) 3300007568 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 5906 3 0 0 0 0 SRX3201343 Unrestricted 0.0 Single_particle_sort 3300036212 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Santa Monica Basin, California, United States - ANME aggregate JGI_Orphan.7180.BNCT.3.M10 DOE Joint Genome Institute (JGI) 3300036212 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 35.723 -118.9436 694080 818 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300038903 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.1.2015 0410 MDM2 LHC4 sed p1 16S.D16.double-seq DOE Joint Genome Institute (JGI) 3300038903 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 900108 1075 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300020924 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera39 DOE Joint Genome Institute (JGI) 3300020924 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 9604986 9549 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034225 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep1 HSBNCT.FG11.300.03.H4 DOE Joint Genome Institute (JGI) 3300034225 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 1690522 1606 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300032905 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep3 HSBNCT.T11.300.1.K13 DOE Joint Genome Institute (JGI) 3300032905 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 7813904 6906 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300043545 *Microbiome Permanent Draft Green algae associated microbial communities from Chlorella culture in University of Arizona, United States Enriched cells of Vampirovibrio chlorellavorus culture contaminated with Chlorella, University of Arizona, USA - Vampirovibrio chlorellavorus Vc_AZ 7_2 DOE Joint Genome Institute (JGI) 3300043545 Metagenome - Cell Enrichment metaspades v. 3.14.1 released based on JGI ITS Yes Yes jbrown@ag.arizona.edu Judith Brown No Engineered Lab culture Algae Culture media Contaminated lab culture 32.2308 -110.9534 137398414 185736 68 5 92 8 Unrestricted 229.79 Single_particle_sort 3300047204 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_HPG1_D3 DOE Joint Genome Institute (JGI) 3300047204 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 18518393 28875 14 0 11 0 Restricted 140.23 Single_particle_sort 3300020671 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera58 DOE Joint Genome Institute (JGI) 3300020671 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 12856089 12597 5 0 5 0 Unrestricted 0.0 Single_particle_sort 3300010505 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.C13.16S negative DOE Joint Genome Institute (JGI) 3300010505 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 434552 492 0 0 0 0 SRX2750995 Unrestricted 0.0 Single_particle_sort 3300034224 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep2 HSBNCT.FG11.300.03.E8 DOE Joint Genome Institute (JGI) 3300034224 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 3943468 3940 3 0 1 0 Unrestricted 0.0 Single_particle_sort 3300032904 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep3 HSBNCT.FGM.300.1.K15 DOE Joint Genome Institute (JGI) 3300032904 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 14370317 13921 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300028931 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Erie, Ohio, United States - ER36.Total.D5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028931 Metagenome - Cell Enrichment SPAdes v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 41.935 -81.4783 7536452 9777 3 0 5 0 Unrestricted 52.58 Single_particle_sort 3300010637 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.I7.16S negative DOE Joint Genome Institute (JGI) 3300010637 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1191005 1240 0 0 0 0 SRX2750615 Unrestricted 0.0 Single_particle_sort 3300010504 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.K7.16S negative DOE Joint Genome Institute (JGI) 3300010504 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 358366 490 0 0 0 0 SRX2750257 Unrestricted 0.0 Single_particle_sort 3300032611 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep1 HSBNCT.T11.300.1.D5 DOE Joint Genome Institute (JGI) 3300032611 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 5783319 5760 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034326 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep1 HSBNCT.FG11.5000.02.F5 DOE Joint Genome Institute (JGI) 3300034326 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 8173191 8721 5 0 3 0 Unrestricted 0.0 Single_particle_sort 3300047205 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_HPG1_F3 DOE Joint Genome Institute (JGI) 3300047205 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 15605209 25106 8 0 18 0 Restricted 255.5 Single_particle_sort 3300038930 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Sandy's Spring West, Nevada, USA - SSWsed.3.2015 0414 MDM2 SSWsed p3 16S.C20.double-peak DOE Joint Genome Institute (JGI) 3300038930 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 40.653 -119.3749 271622 360 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300009219 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsE06-p2 DOE Joint Genome Institute (JGI) 3300009219 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 331762 454 1 0 0 0 SRX3205147 Unrestricted 0.0 Single_particle_sort 3300020980 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera50 DOE Joint Genome Institute (JGI) 3300020980 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 6711207 6724 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300010473 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.G6.16S negative DOE Joint Genome Institute (JGI) 3300010473 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 263390 337 0 0 0 0 SRX2748717 Unrestricted 0.0 Single_particle_sort 3300036227 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.J7 DOE Joint Genome Institute (JGI) 3300036227 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 3427451 3476 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300024013 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.C3 DOE Joint Genome Institute (JGI) 3300024013 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 4741823 5454 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034810 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - Total cells Soil RepC EcoBCT.Soil.5000.2.L5 DOE Joint Genome Institute (JGI) 3300034810 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 9340115 10388 5 0 7 0 Unrestricted 0.0 Single_particle_sort 3300020908 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera44 DOE Joint Genome Institute (JGI) 3300020908 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 8219993 8126 1 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034269 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep3 HSBNCT.FG11.300.03.E13 DOE Joint Genome Institute (JGI) 3300034269 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 2864133 3096 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300017863 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-3_K3 DOE Joint Genome Institute (JGI) 3300017863 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 4132705 4351 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034491 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.SSM.Mag.03.J5 DOE Joint Genome Institute (JGI) 3300034491 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 6292532 4322 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300047228 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_AV2_F3 DOE Joint Genome Institute (JGI) 3300047228 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 31987062 59878 25 0 36 0 Restricted 101.34 Single_particle_sort 3300020862 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera5 DOE Joint Genome Institute (JGI) 3300020862 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5422762 5860 4 0 7 0 Unrestricted 0.0 Single_particle_sort 3300031978 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs Polaribacter B5 DOE Joint Genome Institute (JGI) 3300031978 Metagenome - Cell Enrichment spades v. 3.12.0 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 320587 366 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300046972 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.I7 DOE Joint Genome Institute (JGI) 3300046972 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 20598328 20867 3 0 8 0 Unrestricted 0.0 Single_particle_sort 3300020969 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera14 DOE Joint Genome Institute (JGI) 3300020969 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 6063040 5951 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300010528 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.B18.16S negative DOE Joint Genome Institute (JGI) 3300010528 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 569729 683 1 0 0 0 SRX2749585 Unrestricted 0.0 Single_particle_sort 3300032999 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.June20.5000.01.C4 DOE Joint Genome Institute (JGI) 3300032999 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 12866068 13559 4 0 7 0 Unrestricted 0.0 Single_particle_sort 3300007481 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C42_LAv2 DOE Joint Genome Institute (JGI) 3300007481 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 28778033 29305 9 0 17 0 SRX2938346 Unrestricted 0.0 Single_particle_sort 3300028691 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Erie, Ontario, Canada - ER10.Total.B5 DOE Joint Genome Institute (JGI) 3300028691 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.68 -79.6916 18395604 39498 6 0 10 0 Unrestricted 92.72 Single_particle_sort 3300034208 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep2 HSBNCT.FG11.300.03.D8 DOE Joint Genome Institute (JGI) 3300034208 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 3081025 3255 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032928 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep1 HSBNCT.FGM.300.1.M5 DOE Joint Genome Institute (JGI) 3300032928 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 11023871 9105 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010599 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.G14.16S negative DOE Joint Genome Institute (JGI) 3300010599 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 803865 1047 0 0 0 0 SRX3352024 Unrestricted 0.0 Single_particle_sort 3300021390 *Microbiome Finished Water metavirome from crystallizer in the solar salterns in Santa Pola Enriched hypersaline water viral communities from crystillized pond CR30 in Solar Salterns, Santa Pola, Alicante, Spain - clone 6C8 Genome Express 3300021390 Metagenome - Cell Enrichment Seqman application of the Lasergene software (DNASTAR Corporation) released by JGI data releasing policy No Yes emnabouhajja@gmail.com Emna Bouhajja No Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Unclassified Hypersaline water 38.1922 -0.5918 1448 1 0 0 0 0 0.0 Single_particle_sort 3300020674 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera79 DOE Joint Genome Institute (JGI) 3300020674 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 13596375 13668 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300028935 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Superior, Ontario, Canada - SU02.DCL.Total.C7 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028935 Metagenome - Cell Enrichment SPAdes v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.3605 -85.6205 9672519 12439 4 0 3 0 Unrestricted 169.2 Single_particle_sort 3300007420 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D78_LAv2 DOE Joint Genome Institute (JGI) 3300007420 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 3011248 3055 1 0 1 0 SRX2939920 Unrestricted 0.0 Single_particle_sort 3300020782 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera59 DOE Joint Genome Institute (JGI) 3300020782 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 9224893 9299 4 0 3 0 Unrestricted 0.0 Single_particle_sort 3300032901 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep1 HSBNCT.FGM.300.1.D4 DOE Joint Genome Institute (JGI) 3300032901 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 4167693 3919 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010501 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.E14.16S negative DOE Joint Genome Institute (JGI) 3300010501 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 373783 470 0 0 0 0 SRX2749417 Unrestricted 0.0 Single_particle_sort 3300028934 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Erie, Ontario, Canada - ER10.Large.C7 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028934 Metagenome - Cell Enrichment SPAdes v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.68 -79.6916 8462588 10993 2 0 4 0 Unrestricted 239.41 Single_particle_sort 3300020675 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera37 DOE Joint Genome Institute (JGI) 3300020675 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 15136231 14947 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300024159 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells of freshwater protists from Biology Centre CAS, Ceske Budejovice, Czech Republic - JAMX8_100Endo3_C3 DOE Joint Genome Institute (JGI) 3300024159 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Freshwater Unclassified enrichment culture 48.9774 14.4478 4994634 5044 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300038876 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - PDU D8.8.MDM2 PDU D8 p8 16S.G13.double-seq DOE Joint Genome Institute (JGI) 3300038876 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 347424 406 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010662 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.E6.16S negative DOE Joint Genome Institute (JGI) 3300010662 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1353208 1395 0 0 1 0 SRX2750224 Unrestricted 0.0 Single_particle_sort 3300021146 *Microbiome Permanent Draft Investigating the Microbiome of Thiomargarita & Thiopilula Thiomargarita spp. associated microbial communities from marine sediment, the Benguela Current, Namibia - TCHAIN002 University of Minnesota - Twin Cities 3300021146 Metagenome - Cell Enrichment Spades 3.10 released by JGI data releasing policy No Yes beverlyflood@mac.com Beverly Flood No Host-associated Microbial Unclassified Bacteria Unclassified marine sediment -23.0025 14.09916667 43916574 64209 20 0 20 0 0.0 Single_particle_sort 3300033013 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep3 HSBNCT.N11.300.1.L14 DOE Joint Genome Institute (JGI) 3300033013 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3443143 3673 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020921 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera57 DOE Joint Genome Institute (JGI) 3300020921 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 8925770 9297 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300010613 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.J6.16S negative DOE Joint Genome Institute (JGI) 3300010613 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1039477 1099 0 0 0 0 SRX2750609 Unrestricted 0.0 Single_particle_sort 3300034369 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells T11 rep3 HSBNCT.T11.5000.01.K5 DOE Joint Genome Institute (JGI) 3300034369 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3919 7118950 7315 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300007390 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C44_wellH02 DOE Joint Genome Institute (JGI) 3300007390 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 1214174 1502 1 0 2 0 SRX3201126 Unrestricted 0.0 Single_particle_sort 3300036270 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_E13 DOE Joint Genome Institute (JGI) 3300036270 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 48076 59 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300024171 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.D3 DOE Joint Genome Institute (JGI) 3300024171 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 8636614 9552 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300036327 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.I6 DOE Joint Genome Institute (JGI) 3300036327 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 5351695 5626 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034807 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells Soil RepC EcoBCT.Soil.5000.2.K4 DOE Joint Genome Institute (JGI) 3300034807 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 11288892 11731 6 0 6 0 Unrestricted 0.0 Single_particle_sort 3300028944 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Michigan, Michigan, United States - MI23.SRFL.Total.B7 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028944 Metagenome - Cell Enrichment SPAdes v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.1333 -87.0 37347267 47434 11 0 11 0 Unrestricted 228.47 Single_particle_sort 3300034308 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells T11 rep1 HSBNCT.T11.5000.01.E5 DOE Joint Genome Institute (JGI) 3300034308 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3919 6297864 6374 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300033118 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep2 HSBNCT.N11.300.1.N10 DOE Joint Genome Institute (JGI) 3300033118 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3269850 3416 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034502 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.SSM.Mag.03.N10 DOE Joint Genome Institute (JGI) 3300034502 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 8755632 5941 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300028945 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Michigan, Michigan, United States - MI23.DCL.Total.B5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028945 Metagenome - Cell Enrichment SPAdes v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.1333 -87.0 44300371 56364 19 0 16 0 Unrestricted 127.88 Single_particle_sort 3300028936 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Superior, Ontario, Canada - SU02.DCL.Total.D7 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028936 Metagenome - Cell Enrichment SPAdes v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.3605 -85.6205 12361378 15758 4 0 3 0 Unrestricted 154.25 Single_particle_sort 3300021020 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera47 DOE Joint Genome Institute (JGI) 3300021020 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 10656320 10742 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300034321 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells N11 rep3 HSBNCT.N11.5000.01.K4 DOE Joint Genome Institute (JGI) 3300034321 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3921 3735483 3862 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300024118 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.D3 DOE Joint Genome Institute (JGI) 3300024118 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 7818711 8360 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300032873 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July02.5000.02.C7 DOE Joint Genome Institute (JGI) 3300032873 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 7339222 7622 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300024202 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells of freshwater protists from Biology Centre CAS, Ceske Budejovice, Czech Republic - ZER3_1Amoeba_D21 DOE Joint Genome Institute (JGI) 3300024202 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Freshwater Unclassified enrichment culture 48.9774 14.4478 1686110 2665 0 1 0 1 Unrestricted 0.0 Single_particle_sort 3300022070 *Microbiome Permanent Draft Wastewater microbial communities from Base Mine Lake, Ft. McMurray, Alberta, Canada - Surface, October 2016 Wastewater microbial communities from Base Mine Lake, Ft. McMurray, Alberta, Canada - Surface, October 2016 University of Calgary 3300022070 Metagenome - Cell Enrichment SPAdes-3.9.0 released by JGI data releasing policy No Yes dunfield.bio@gmail.com Dunfield Laboratory No Engineered Wastewater Petrochemical Industrial wastewater Unclassified Petrochemical wastewater 56.0 -111.0 8.0 118678923 204626 81 6 107 6 0.0 Single_particle_sort 3300041843 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Cand. Thiomargarita magnifica 72 DOE Joint Genome Institute (JGI) 3300041843 Metagenome - Cell Enrichment spades v. 3.14.1 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 12501228 12032 0 0 4 0 Unrestricted 0.0 Single_particle_sort 3300048663 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.karukerense.extraction.2 DOE Joint Genome Institute (JGI) 3300048663 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 11490079 12819 7 0 9 0 Unrestricted 0.0 Single_particle_sort 3300007477 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D01_HANv2 DOE Joint Genome Institute (JGI) 3300007477 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 22694522 24589 6 0 14 0 SRX2938347 Unrestricted 0.0 Single_particle_sort 3300007688 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C25_wellE01 DOE Joint Genome Institute (JGI) 3300007688 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 20478 43 0 0 0 0 SRX3201640 Unrestricted 0.0 Single_particle_sort 3300038875 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - PDU D8.8.MDM2 PDU D8 p8 16S.E19.double-seq DOE Joint Genome Institute (JGI) 3300038875 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 806810 820 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300021144 *Microbiome Permanent Draft Investigating the Microbiome of Thiomargarita & Thiopilula Thiomargarita spp. associated microbial communities from marine sediment, the Benguela Current, Namibia - TCHAIN006.1 University of Minnesota - Twin Cities 3300021144 Metagenome - Cell Enrichment Spades 3.10 released by JGI data releasing policy No Yes beverlyflood@mac.com Beverly Flood No Host-associated Microbial Unclassified Bacteria Unclassified marine sediment -23.0025 14.09916667 13883301 19129 6 0 7 0 0.0 Single_particle_sort 3300032530 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep1 HSBNCT.T11.300.1.E3 DOE Joint Genome Institute (JGI) 3300032530 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 4789879 4928 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300010492 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.F18.16S negative DOE Joint Genome Institute (JGI) 3300010492 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 317644 437 0 0 1 0 SRX2750444 Unrestricted 0.0 Single_particle_sort 3300038874 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - PDU D8.8.MDM2 PDU D8 p8 16S.E17.double-seq DOE Joint Genome Institute (JGI) 3300038874 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 1017368 1211 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300017812 *Microbiome Permanent Draft Microbial Fuel Cells Microbial community enrichment from Tel Aviv University, Israel Anode biofilm microbial communities from active microbial fuel cell enriched in bioreactor, Tel Aviv University, Israel - ElectroactiveEnrich first draft University of Illinois, Chicago 3300017812 Metagenome - Cell Enrichment SPAdes 3.9.1 released by JGI data releasing policy No Yes keren@gal-soc.org Keren Yanuka-Golub No Engineered Bioreactor Unclassified Anaerobic Unclassified bioreactor 32.111767 34.801361 62459708 63745 27 0 32 0 0.0 Single_particle_sort 3300021145 *Microbiome Permanent Draft Investigating the Microbiome of Thiomargarita & Thiopilula Thiomargarita spp. associated microbial communities from marine sediment, the Benguela Current, Namibia - TCHAIN006.2 University of Minnesota - Twin Cities 3300021145 Metagenome - Cell Enrichment Spades 3.10 released by JGI data releasing policy No Yes beverlyflood@mac.com Beverly Flood No Host-associated Microbial Unclassified Unclassified Unclassified marine sediment -23.0025 14.09916667 544878 1215 0 2 0 0 0.0 Single_particle_sort 3300038940 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Sandy's Spring West, Nevada, USA - SSWsed.3.2015 0414 MDM2 SSWsed p3 16S.I6.double-peak DOE Joint Genome Institute (JGI) 3300038940 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 40.653 -119.3749 542134 646 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034938 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_L4 DOE Joint Genome Institute (JGI) 3300034938 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 105485 134 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300032780 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.June25.5000.01.C3 DOE Joint Genome Institute (JGI) 3300032780 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 16692891 17402 3 0 6 0 Unrestricted 0.0 Single_particle_sort 3300028696 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Superior, Ontario, Canada - SU02.SRF.Total.B5 DOE Joint Genome Institute (JGI) 3300028696 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.3605 -85.6205 22385569 50821 10 0 16 0 Unrestricted 116.6 Single_particle_sort 3300033037 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep1 HSBNCT.N11.300.1.M4 DOE Joint Genome Institute (JGI) 3300033037 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 1550892 1782 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300028941 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Erie, Ohio, United States - ER36.Total.D7 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028941 Metagenome - Cell Enrichment SPAdes v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 41.935 -81.4783 13571040 17509 7 0 6 0 Unrestricted 78.24 Single_particle_sort 3300010647 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.H8.16S negative DOE Joint Genome Institute (JGI) 3300010647 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1042087 1308 0 0 0 0 SRX2750703 Unrestricted 0.0 Single_particle_sort 3300049393 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.G6 DOE Joint Genome Institute (JGI) 3300049393 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 20095831 21652 10 0 17 0 Unrestricted 0.0 Single_particle_sort 3300020659 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera59 DOE Joint Genome Institute (JGI) 3300020659 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 9475175 9200 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300034496 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.SSM.Mag.03.N4 DOE Joint Genome Institute (JGI) 3300034496 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 9009885 5984 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300024175 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.I3 DOE Joint Genome Institute (JGI) 3300024175 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 16036742 18050 4 0 3 0 Unrestricted 0.0 Single_particle_sort 3300018722 *Microbiome Permanent Draft Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India Lab enriched petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India - point GR3 NA Spades_77 Life Technologies 3300018722 Metagenome - Cell Enrichment SPAdes 3.10.1 released by JGI data releasing policy No Yes sarkar.jayeeta12@gmail.com Jayeeta Sarkar No Engineered Bioremediation Unclassified Hydrocarbon Unclassified petroleum sludge 26.18471 91.80725 148565420 291259 100 1 134 1 SRX2512230 0.0 Single_particle_sort 3300020799 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera70 DOE Joint Genome Institute (JGI) 3300020799 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 11651941 11867 2 0 5 0 Unrestricted 0.0 Single_particle_sort 3300009236 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Santa Monica Basin, CA to study methane oxidation - BONCAT_CE_7061-Q-ConsC02 DOE Joint Genome Institute (JGI) 3300009236 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes hatzenpichler@caltech.edu, roland.hatzenpichler@montana.edu; vorphan@gps.caltech.edu Hatzenpichler, Roland Hatzenpichler; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 33.789 -119.2284 930235 1171 0 0 0 0 SRX3204975 Unrestricted 0.0 Single_particle_sort 3300032769 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.Aug07.5000.01.C5 DOE Joint Genome Institute (JGI) 3300032769 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 3348163 3446 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007402 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C74_wellE05 DOE Joint Genome Institute (JGI) 3300007402 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 721214 887 0 0 0 0 SRX3200310 Unrestricted 0.0 Single_particle_sort 3300036263 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.1.C10 DOE Joint Genome Institute (JGI) 3300036263 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 4399261 4555 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300024174 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.J3 DOE Joint Genome Institute (JGI) 3300024174 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 12424078 13799 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300010690 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.D16.16S negative DOE Joint Genome Institute (JGI) 3300010690 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1414883 1708 0 0 0 0 SRX2750425 Unrestricted 0.0 Single_particle_sort 3300032552 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep3 HSBNCT.T11.300.1.D15 DOE Joint Genome Institute (JGI) 3300032552 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 2475420 2605 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020926 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera90 DOE Joint Genome Institute (JGI) 3300020926 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 9362065 9624 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300034872 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - Total cells Plant RepA EcoBCT.Plant.5000.1.F3 DOE Joint Genome Institute (JGI) 3300034872 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 13078964 14574 5 0 5 0 Unrestricted 0.0 Single_particle_sort 3300020847 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera38 DOE Joint Genome Institute (JGI) 3300020847 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 4905153 4964 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036312 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.D10 DOE Joint Genome Institute (JGI) 3300036312 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 6518494 6803 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010952 *Microbiome Permanent Draft Mouse host associated microbial communities from Vienna, Austria Mouse cecal microbial communities from Vienna, Austria - N-Acetylneuraminic acid amended with D2O_NANAH DOE Joint Genome Institute (JGI) 3300010952 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes romans@mit.edu Roman Stocker No Host-associated Mammals Large intestine Digestive system Cecum Mouse cecum 48.2 16.37 4882178 5739 8 0 8 0 SRX2954877 Unrestricted 0.0 Single_particle_sort 3300032982 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep2 HSBNCT.T11.300.1.N11 DOE Joint Genome Institute (JGI) 3300032982 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 11228710 9173 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032857 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July30.5000.01.D3 DOE Joint Genome Institute (JGI) 3300032857 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 30224936 29481 7 0 13 0 Unrestricted 0.0 Single_particle_sort 3300039846 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - BONCATsort_HPG_rep_2_250000events_15pcr DOE Joint Genome Institute (JGI) 3300039846 Metagenome - Cell Enrichment metaspades v. 3.13.0 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5326 -110.7972 24319383 66959 29 0 65 0 Unrestricted 114.67 Single_particle_sort 3300007453 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C11_HNv2 DOE Joint Genome Institute (JGI) 3300007453 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 11331059 11192 4 0 3 0 SRX2939888 Unrestricted 0.0 Single_particle_sort 3300034577 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.N3 DOE Joint Genome Institute (JGI) 3300034577 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 2370548 2438 1 0 1 0 SRX8394390 Unrestricted 0.0 Single_particle_sort 3300038871 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Paint Pots Mound iron-sulfur acid spring, British Columbia, Canada - PDU P1.4.PDU.D1.p4.16S.J16.double-seq DOE Joint Genome Institute (JGI) 3300038871 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Warm (34-42C) Thermal springs Acidic Hot spring water 51.1699 -116.1578 2703617 2399 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010582 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.F8.16S negative DOE Joint Genome Institute (JGI) 3300010582 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 840073 948 0 0 0 0 SRX2750708 Unrestricted 0.0 Single_particle_sort 3300043546 *Microbiome Permanent Draft Green algae associated microbial communities from Chlorella culture in University of Arizona, United States Enriched cells of Vampirovibrio chlorellavorus culture contaminated with Chlorella, University of Arizona, USA - Vampirovibrio chlorellavorus Vc_AZ 3_1 DOE Joint Genome Institute (JGI) 3300043546 Metagenome - Cell Enrichment metaspades v. 3.14.1 released based on JGI ITS Yes Yes jbrown@ag.arizona.edu Judith Brown No Engineered Lab culture Algae Culture media Contaminated lab culture 32.2308 -110.9534 208348668 283285 67 1 91 2 Unrestricted 137.27 Single_particle_sort 3300034324 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep1 HSBNCT.FG11.5000.02.E6 DOE Joint Genome Institute (JGI) 3300034324 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 7017272 6928 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300010506 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.L9.16S negative DOE Joint Genome Institute (JGI) 3300010506 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 459742 501 0 0 0 0 SRX2748927 Unrestricted 0.0 Single_particle_sort 3300031268 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.CF.UnFx.1-neg.2 DOE Joint Genome Institute (JGI) 3300031268 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 4930825 5178 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032906 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep2 HSBNCT.T11.300.1.D9 DOE Joint Genome Institute (JGI) 3300032906 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 4891048 4844 4 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034226 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep1 HSBNCT.FG11.300.03.H6 DOE Joint Genome Institute (JGI) 3300034226 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 1390660 1375 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300020890 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera2 DOE Joint Genome Institute (JGI) 3300020890 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7168484 7294 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300032860 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep2 HSBNCT.T11.300.1.M10 DOE Joint Genome Institute (JGI) 3300032860 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 9529551 8149 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300047206 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_HPG1_C3 DOE Joint Genome Institute (JGI) 3300047206 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 27196224 52521 21 0 24 0 Restricted 94.53 Single_particle_sort 3300034325 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep1 HSBNCT.FG11.5000.02.F4 DOE Joint Genome Institute (JGI) 3300034325 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 7763681 8292 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020977 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera26 DOE Joint Genome Institute (JGI) 3300020977 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 6876591 6618 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300036186 *Microbiome Permanent Draft Marine microalgae viral communities from raceway pond in Palavas-les-Flots, France Enriched cells of marine microalgae from raceway pond in Palavas-les-Flots, France - 11.09.P1 MEGA virome DOE Joint Genome Institute (JGI) 3300036186 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes guillaume.blanc@mio.osupytheas.fr Guillaume Blanc No Host-associated Algae Unclassified Microalgae Unclassified marine microalgae 43.5198 3.9073 8263009 10470 2 0 5 0 Unrestricted 0.0 Single_particle_sort 3300047217 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_HPG3_C3 DOE Joint Genome Institute (JGI) 3300047217 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 36240178 74884 16 0 49 0 Restricted 65.18 Single_particle_sort 3300034849 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - Total cells SoilN RepA EcoBCT.SoilN.5000.1.F3 DOE Joint Genome Institute (JGI) 3300034849 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 12915314 14652 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300038941 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Sandy's Spring West, Nevada, USA - SSWsed.3.2015 0414 MDM2 SSWsed p3 16S.I9.double-peak DOE Joint Genome Institute (JGI) 3300038941 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 40.653 -119.3749 683507 774 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300032531 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep1 HSBNCT.T11.300.1.D3 DOE Joint Genome Institute (JGI) 3300032531 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 8678943 8679 5 0 6 0 Unrestricted 0.0 Single_particle_sort 3300010517 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.E14.16S negative DOE Joint Genome Institute (JGI) 3300010517 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 434442 595 0 0 0 0 SRX2750381 Unrestricted 0.0 Single_particle_sort 3300009240 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Santa Monica Basin, CA to study methane oxidation - BONCAT_CE_7061-Q-ConsC10 DOE Joint Genome Institute (JGI) 3300009240 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes hatzenpichler@caltech.edu, roland.hatzenpichler@montana.edu; vorphan@gps.caltech.edu Hatzenpichler, Roland Hatzenpichler; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 33.789 -119.2284 979656 1217 0 0 0 0 SRX3204974 Unrestricted 0.0 Single_particle_sort 3300036218 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.F7 DOE Joint Genome Institute (JGI) 3300036218 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 6502132 6783 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020895 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera20 DOE Joint Genome Institute (JGI) 3300020895 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7181281 7403 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300021021 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera50 DOE Joint Genome Institute (JGI) 3300021021 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 10324013 10395 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034277 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep2 HSBNCT.FG11.300.03.L9 DOE Joint Genome Institute (JGI) 3300034277 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 9591205 8824 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300032865 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July16.5000.01.C5 DOE Joint Genome Institute (JGI) 3300032865 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 4411414 4712 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034320 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells N11 rep2 HSBNCT.N11.5000.01.I5 DOE Joint Genome Institute (JGI) 3300034320 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3921 5242990 5632 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300048674 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.magnifica.extraction.1 DOE Joint Genome Institute (JGI) 3300048674 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 14674227 14504 4 0 8 0 Unrestricted 0.0 Single_particle_sort 3300020894 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera40 DOE Joint Genome Institute (JGI) 3300020894 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 6763665 7381 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300032864 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep1 HSBNCT.FGM.300.1.L5 DOE Joint Genome Institute (JGI) 3300032864 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 12488841 10718 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300021008 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera91 DOE Joint Genome Institute (JGI) 3300021008 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 9579083 9158 5 0 6 0 Unrestricted 0.0 Single_particle_sort 3300032784 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep3 HSBNCT.FGM.300.1.L13 DOE Joint Genome Institute (JGI) 3300032784 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 18993207 17543 5 0 5 0 Unrestricted 0.0 Single_particle_sort 3300034923 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_I3 DOE Joint Genome Institute (JGI) 3300034923 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 865644 967 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300032785 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep3 HSBNCT.FGM.300.1.F14 DOE Joint Genome Institute (JGI) 3300032785 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 10634200 9646 4 0 3 0 Unrestricted 0.0 Single_particle_sort 3300010695 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.C7.16S negative DOE Joint Genome Institute (JGI) 3300010695 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1942612 1834 1 0 1 0 SRX2750610 Unrestricted 0.0 Single_particle_sort 3300034797 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - Total cells Soil RepA EcoBCT.Soil.5000.2.F5 DOE Joint Genome Institute (JGI) 3300034797 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 7973549 9180 5 0 7 0 Unrestricted 0.0 Single_particle_sort 3300017876 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-4_E3 DOE Joint Genome Institute (JGI) 3300017876 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 6.08 3965446 4226 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036271 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_F13 DOE Joint Genome Institute (JGI) 3300036271 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 66644 88 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010694 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.K10.16S negative DOE Joint Genome Institute (JGI) 3300010694 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1546048 1826 0 0 0 0 SRX2750314 Unrestricted 0.0 Single_particle_sort 3300007699 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C81_wellF04 DOE Joint Genome Institute (JGI) 3300007699 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 18507 31 0 0 0 0 SRX3202251 Unrestricted 0.0 Single_particle_sort 3300010466 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.B21.Aquificae DOE Joint Genome Institute (JGI) 3300010466 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 225104 289 0 0 0 0 SRX2750463 Unrestricted 0.0 Single_particle_sort 3300024170 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.F3 DOE Joint Genome Institute (JGI) 3300024170 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 8424070 9136 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007391 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C43_wellH01 DOE Joint Genome Institute (JGI) 3300007391 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 982417 1266 0 0 0 0 SRX3201117 Unrestricted 0.0 Single_particle_sort 3300009191 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Santa Monica Basin, CA to study methane oxidation - BONCAT_CE_7061-Q-ConsG01 DOE Joint Genome Institute (JGI) 3300009191 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes hatzenpichler@caltech.edu, roland.hatzenpichler@montana.edu; vorphan@gps.caltech.edu Hatzenpichler, Roland Hatzenpichler; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 33.789 -119.2284 887262 1133 0 0 1 0 SRX3204990 Unrestricted 0.0 Single_particle_sort 3300047243 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_HPG1_G3 DOE Joint Genome Institute (JGI) 3300047243 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 18728619 34036 19 0 29 0 Restricted 110.87 Single_particle_sort 3300020953 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera45 DOE Joint Genome Institute (JGI) 3300020953 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 3622153 3634 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300005115 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME D02B22 DOE Joint Genome Institute (JGI) 3300005115 Metagenome - Cell Enrichment spades v. 3.0.0 Nikos: made them private temporary due to Tanja;s request for quality control check No Yes wagner@microbial-ecology.net Michael Wagner Yes 28386012.0 Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 47845614 49762 15 0 18 0 SRX2482143 Unrestricted 0.0 Single_particle_sort 3300023384 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities from Utah, United States - BONCAT_SYTO_Terrestrial_sediment - 13 DOE Joint Genome Institute (JGI) 3300023384 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 92202280 249825 134 0 202 0 Unrestricted 13.43 Single_particle_sort 3300021024 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera68 DOE Joint Genome Institute (JGI) 3300021024 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 11013187 11038 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300010668 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.C10.16S negative DOE Joint Genome Institute (JGI) 3300010668 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1136159 1421 0 0 0 0 SRX2750272 Unrestricted 0.0 Single_particle_sort 3300020627 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera73 DOE Joint Genome Institute (JGI) 3300020627 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 10543575 10679 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300046939 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment.pos_JMV.Tmarg.Fil1.2.D3 DOE Joint Genome Institute (JGI) 3300046939 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 17006519 17686 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300010543 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.D5.16S negative DOE Joint Genome Institute (JGI) 3300010543 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 589558 738 0 0 0 0 SRX2750221 Unrestricted 0.0 Single_particle_sort 3300023385 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities from Utah, United States - BONCAT_SYTO_Terrestrial_sediment - 16 DOE Joint Genome Institute (JGI) 3300023385 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 109179559 312765 152 0 202 0 Unrestricted 14.24 Single_particle_sort 3300032861 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep2 HSBNCT.T11.300.1.M11 DOE Joint Genome Institute (JGI) 3300032861 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 10383596 8589 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300005114 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME D13B63 DOE Joint Genome Institute (JGI) 3300005114 Metagenome - Cell Enrichment spades v. 3.0.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 2873014 2874 1 0 1 0 SRX2482149 Unrestricted 0.0 Single_particle_sort 3300021025 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera55 DOE Joint Genome Institute (JGI) 3300021025 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 10917232 10774 1 0 3 0 Unrestricted 0.0 Single_particle_sort 3300020891 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera89 DOE Joint Genome Institute (JGI) 3300020891 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7326627 7318 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032943 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep3 HSBNCT.T11.300.1.K14 DOE Joint Genome Institute (JGI) 3300032943 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 9608183 8330 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007426 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge DR07_H0 DOE Joint Genome Institute (JGI) 3300007426 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 3434052 3341 2 0 3 0 SRX2929717 Unrestricted 0.0 Single_particle_sort 3300017859 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-6_M3 DOE Joint Genome Institute (JGI) 3300017859 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 2741499 3246 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300004083 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from Chapel Hill, North Carolina, USA - Col MF FACS (version 2) DOE Joint Genome Institute (JGI) 3300004083 Metagenome - Cell Enrichment MEGAHIT v. 0.2.0 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9077 -79.0508 16869887 61618 2 0 43 0 Unrestricted 0.0 Single_particle_sort 3300020788 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera18 DOE Joint Genome Institute (JGI) 3300020788 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 10136236 9997 5 0 8 0 Unrestricted 0.0 Single_particle_sort 3300034253 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep3 HSBNCT.FG11.300.03.F15 DOE Joint Genome Institute (JGI) 3300034253 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 4821764 4728 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300038870 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Paint Pots Mound iron-sulfur acid spring, British Columbia, Canada - PDU P1.3.2014 1203 MDM2 PDU P1 p3 16S.N18.double-seq DOE Joint Genome Institute (JGI) 3300038870 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Warm (34-42C) Thermal springs Acidic Hot spring water 51.1699 -116.1578 348656 433 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010609 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.E7.16S negative DOE Joint Genome Institute (JGI) 3300010609 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 864947 1085 0 0 0 0 SRX2750254 Unrestricted 0.0 Single_particle_sort 3300017887 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-3_H3 DOE Joint Genome Institute (JGI) 3300017887 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 5712453 6260 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034202 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep1 HSBNCT.FG11.300.03.D4 DOE Joint Genome Institute (JGI) 3300034202 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 1710654 1842 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036275 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_D15 DOE Joint Genome Institute (JGI) 3300036275 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 41417 53 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300032922 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep2 HSBNCT.FGM.300.1.C11 DOE Joint Genome Institute (JGI) 3300032922 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 6731762 6733 2 0 5 0 Unrestricted 0.0 Single_particle_sort 3300007395 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C26_wellE02 DOE Joint Genome Institute (JGI) 3300007395 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 1244083 1506 0 0 0 0 SRX3200314 Unrestricted 0.0 Single_particle_sort 3300010522 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.G17.16S negative DOE Joint Genome Institute (JGI) 3300010522 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 467941 633 0 0 0 0 SRX2750426 Unrestricted 0.0 Single_particle_sort 3300020986 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera89 DOE Joint Genome Institute (JGI) 3300020986 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 7414424 7128 3 0 5 0 Unrestricted 0.0 Single_particle_sort 3300038936 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Sandy's Spring West, Nevada, USA - SSWsed.3.2015 0414 MDM2 SSWsed p3 16S.F19.double-peak DOE Joint Genome Institute (JGI) 3300038936 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 40.653 -119.3749 1194095 1525 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010691 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.I15.16S negative DOE Joint Genome Institute (JGI) 3300010691 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1829204 1792 1 0 1 0 SRX2750400 Unrestricted 0.0 Single_particle_sort 3300024163 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.G10 DOE Joint Genome Institute (JGI) 3300024163 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 6749611 7231 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036274 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_G14 DOE Joint Genome Institute (JGI) 3300036274 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 172509 217 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300007394 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C31_wellF01 DOE Joint Genome Institute (JGI) 3300007394 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 1010880 1260 0 0 0 0 SRX3200768 Unrestricted 0.0 Single_particle_sort 3300020868 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera52 DOE Joint Genome Institute (JGI) 3300020868 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 6067466 6090 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300047222 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_AV1_F3 DOE Joint Genome Institute (JGI) 3300047222 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 35812624 86048 18 0 45 0 Restricted 123.71 Single_particle_sort 3300020902 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera19 DOE Joint Genome Institute (JGI) 3300020902 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7572740 7745 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300028940 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Erie, Ohio, United States - ER36.Total.B7 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028940 Metagenome - Cell Enrichment SPAdes v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 41.935 -81.4783 12716195 16382 6 0 6 0 Unrestricted 535.86 Single_particle_sort 3300020809 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera84 DOE Joint Genome Institute (JGI) 3300020809 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 16130074 16394 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300041737 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Cand. Thiomargarita magnifica 73 DOE Joint Genome Institute (JGI) 3300041737 Metagenome - Cell Enrichment spades v. 3.14.1 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 19300115 19341 8 0 15 0 Unrestricted 0.0 Single_particle_sort 3300034286 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Benguela upwelling system, South Atlantic Ocean - Ca. Maribeggiatoa JNN162YC_Rep4_CE DOE Joint Genome Institute (JGI) 3300034286 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -23.0 14.0692 1992354 2179 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300009063 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsD02UF DOE Joint Genome Institute (JGI) 3300009063 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes hatzenpichler@caltech.edu, roland.hatzenpichler@montana.edu; vorphan@gps.caltech.edu Hatzenpichler, Roland Hatzenpichler; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 2752951 3074 1 0 1 0 SRX3204468 Unrestricted 0.0 Single_particle_sort 3300007424 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D63_LAv2 DOE Joint Genome Institute (JGI) 3300007424 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 3177159 3280 3 0 5 0 SRX2939174 Unrestricted 0.0 Single_particle_sort 3300032777 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July09.5000.02.C7 DOE Joint Genome Institute (JGI) 3300032777 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 8197801 8548 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300020670 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera81 DOE Joint Genome Institute (JGI) 3300020670 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 12638003 12458 4 0 7 0 Unrestricted 0.0 Single_particle_sort 3300010498 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.G17.S2R-29 DOE Joint Genome Institute (JGI) 3300010498 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 405374 460 0 0 0 0 SRX2751557 Unrestricted 0.0 Single_particle_sort 3300032610 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep3 HSBNCT.T11.300.1.M14 DOE Joint Genome Institute (JGI) 3300032610 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 5056946 4813 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300028930 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Superior, Ontario, Canada - SU02.SRF.Total.C5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028930 Metagenome - Cell Enrichment SPAdes v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.3605 -85.6205 7521314 9558 4 0 3 0 Unrestricted 118.04 Single_particle_sort 3300023386 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities from Utah, United States - BONCAT_SYTO_Terrestrial_sediment - 4 DOE Joint Genome Institute (JGI) 3300023386 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 105129338 272528 139 0 214 0 Unrestricted 17.29 Single_particle_sort 3300021026 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera76 DOE Joint Genome Institute (JGI) 3300021026 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 11415822 11409 7 0 7 0 Unrestricted 0.0 Single_particle_sort 3300007682 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C26_wellE02 DOE Joint Genome Institute (JGI) 3300007682 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 23266 47 0 0 0 0 SRX3202016 Unrestricted 0.0 Single_particle_sort 3300007425 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge DR02_H0 DOE Joint Genome Institute (JGI) 3300007425 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 3049088 3287 1 0 1 0 SRX2929578 Unrestricted 0.0 Single_particle_sort 3300033091 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep3 HSBNCT.FGM.300.1.N13 DOE Joint Genome Institute (JGI) 3300033091 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 15845726 14079 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300024208 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.C5 DOE Joint Genome Institute (JGI) 3300024208 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 4599664 5147 0 0 2 0 Unrestricted 0.0 Single_particle_sort 3300024112 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.J12 DOE Joint Genome Institute (JGI) 3300024112 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 6035761 6869 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300024009 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.G11 DOE Joint Genome Institute (JGI) 3300024009 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 4097003 4661 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034353 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep3 HSBNCT.FG11.300.03.E16 DOE Joint Genome Institute (JGI) 3300034353 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 4213892 4077 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300036181 *Microbiome Permanent Draft Marine microalgae viral communities from raceway pond in Palavas-les-Flots, France Enriched cells of marine microalgae from raceway pond in Palavas-les-Flots, France - RNA-ultraVirome DOE Joint Genome Institute (JGI) 3300036181 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes guillaume.blanc@mio.osupytheas.fr Guillaume Blanc No Host-associated Algae Unclassified Microalgae Unclassified marine microalgae 43.5198 3.9073 145327 96 0 0 1 5 Unrestricted 0.0 Single_particle_sort 3300007396 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C67_wellD04 DOE Joint Genome Institute (JGI) 3300007396 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 2195779 2691 0 0 0 0 SRX3200280 Unrestricted 0.0 Single_particle_sort 3300036276 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_E15 DOE Joint Genome Institute (JGI) 3300036276 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 254532 308 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300033009 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep1 HSBNCT.N11.300.1.C5 DOE Joint Genome Institute (JGI) 3300033009 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 1886876 1994 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034508 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.PSCntrl.SYBR.02.L4 DOE Joint Genome Institute (JGI) 3300034508 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 1315582 1465 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300038934 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Sandy's Spring West, Nevada, USA - SSWsed.3.2015 0414 MDM2 SSWsed p3 16S.E12.double-peak DOE Joint Genome Institute (JGI) 3300038934 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 40.653 -119.3749 1495342 1492 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010461 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.L12.16S negative DOE Joint Genome Institute (JGI) 3300010461 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 179584 259 0 0 0 0 SRX2749362 Unrestricted 0.0 Single_particle_sort 3300020984 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera60 DOE Joint Genome Institute (JGI) 3300020984 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 7179325 6987 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034302 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Bay of Concepcion, South Pacific Ocean - Ca. Marithioploca JBCH1603A3_Rep3_CE DOE Joint Genome Institute (JGI) 3300034302 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -36.51 -73.125 86947 94 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300017871 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-4_B3 DOE Joint Genome Institute (JGI) 3300017871 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 6.08 3895488 4220 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300038935 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Sandy's Spring West, Nevada, USA - SSWsed.3.2015 0414 MDM2 SSWsed p3 16S.F15.double-peak DOE Joint Genome Institute (JGI) 3300038935 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 40.653 -119.3749 819454 951 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300020985 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera21 DOE Joint Genome Institute (JGI) 3300020985 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 7252518 7144 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300034580 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.C3 DOE Joint Genome Institute (JGI) 3300034580 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 2388208 2465 1 0 2 0 SRX8394451 Unrestricted 0.0 Single_particle_sort 3300021537 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from agricultural soil in Iowa, United States - IA12soil_GW_FP2(-) DOE Joint Genome Institute (JGI) 3300021537 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov; aaron.wright@pnnl.gov Tanja Woyke; Aaron Wright No Environmental Terrestrial Agricultural land Soil Unclassified soil 41.9167 -93.75 7088529 8293 3 0 5 0 Unrestricted 0.0 Single_particle_sort 3300032933 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep2 HSBNCT.FGM.300.1.N8 DOE Joint Genome Institute (JGI) 3300032933 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 12385460 11094 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300031347 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.Vis6.UnFx.1-fish+.1 DOE Joint Genome Institute (JGI) 3300031347 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 5492776 5893 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300010533 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.D8.16S negative DOE Joint Genome Institute (JGI) 3300010533 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 620053 708 0 0 0 0 SRX2749674 Unrestricted 0.0 Single_particle_sort 3300046949 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.C5 DOE Joint Genome Institute (JGI) 3300046949 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 795564 851 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034569 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.E3 DOE Joint Genome Institute (JGI) 3300034569 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 348357 413 0 0 0 0 SRX8393465 Unrestricted 0.0 Single_particle_sort 3300024409 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from gastrointestinal tract of the lab mouse from Pacific Northwest National Laboratory (PNNL), Richland, Washington, United States - LIM_F_Water_Pos DOE Joint Genome Institute (JGI) 3300024409 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov; aaron.wright@pnnl.gov Tanja Woyke; Aaron Wright No Host-associated Mammals Unclassified Digestive system Unclassified gastrointestinal tract 46.0 -119.0 20024440 23828 15 0 17 0 Unrestricted 0.0 Single_particle_sort 3300034285 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Benguela upwelling system, South Atlantic Ocean - Ca. Maribeggiatoa JNN162YC_Rep2_CE DOE Joint Genome Institute (JGI) 3300034285 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -23.0 14.0692 40561 49 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300047233 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_AV3_F3 DOE Joint Genome Institute (JGI) 3300047233 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 27121823 49169 22 0 38 0 Restricted 134.77 Single_particle_sort 3300036683 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells T11 rep3 HSBNCT.T11.5000.01.L4 DOE Joint Genome Institute (JGI) 3300036683 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3919 8751860 8214 2 0 0 0 Unrestricted 0.0 Single_particle_sort 3300036259 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Santa Monica Basin, California, United States - ANME aggregate JGI_Orphan.7059.BNCT.2.H4 DOE Joint Genome Institute (JGI) 3300036259 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.7988 -118.6476 6581093 6857 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036185 *Microbiome Permanent Draft Marine microalgae viral communities from raceway pond in Palavas-les-Flots, France Enriched cells of marine microalgae from raceway pond in Palavas-les-Flots, France - 05.07.P4 MEGA virome DOE Joint Genome Institute (JGI) 3300036185 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes guillaume.blanc@mio.osupytheas.fr Guillaume Blanc No Host-associated Algae Unclassified Microalgae Unclassified marine microalgae 43.5198 3.9073 13445926 15501 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300020920 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera2 DOE Joint Genome Institute (JGI) 3300020920 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 8644050 8886 3 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020743 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera68 DOE Joint Genome Institute (JGI) 3300020743 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 4474765 4616 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300036184 *Microbiome Permanent Draft Marine microalgae viral communities from raceway pond in Palavas-les-Flots, France Enriched cells of marine microalgae from raceway pond in Palavas-les-Flots, France - 17.05.P4 MEGA virome DOE Joint Genome Institute (JGI) 3300036184 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes guillaume.blanc@mio.osupytheas.fr Guillaume Blanc No Host-associated Algae Unclassified Microalgae Unclassified marine microalgae 43.5198 3.9073 38249740 40119 8 0 10 0 Unrestricted 0.0 Single_particle_sort 3300032866 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July09.5000.02.C3 DOE Joint Genome Institute (JGI) 3300032866 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 6971058 7265 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020896 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera22 DOE Joint Genome Institute (JGI) 3300020896 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7083610 7422 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010588 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.M21.16S negative DOE Joint Genome Institute (JGI) 3300010588 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 733897 965 0 0 0 0 SRX2750462 Unrestricted 0.0 Single_particle_sort 3300007421 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C05_HNv2 DOE Joint Genome Institute (JGI) 3300007421 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 2845455 3081 1 0 2 0 SRX2935941 Unrestricted 0.0 Single_particle_sort 3300020663 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera52 DOE Joint Genome Institute (JGI) 3300020663 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 10466533 10247 5 0 6 0 Unrestricted 0.0 Single_particle_sort 3300006505 *Microbiome Permanent Draft Marine eukaryotic communities from various locations to study complex ecological interactions Marine eukaryotic communities from Monterey Bay, USA to study complex ecological interactions - Minidiscus trioculatus and Planctomycetes bacterium JGI Plate_4_A5 Single Cell Metagenome DOE Joint Genome Institute (JGI) 3300006505 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes azworden@mbari.org, azworden@mbari.org; twoyke@lbl.gov Alexandra Worden, Alexandra Worden; Tanja Woyke No Environmental Aquatic Unclassified Marine Unclassified Marine 36.746 -122.026 33111186 38574 1 1 1 1 Unrestricted 0.0 Single_particle_sort 3300021391 *Microbiome Permanent Draft Water metavirome from crystallizer in the solar salterns in Santa Pola Enriched hypersaline water viral communities from crystillized pond CR30 in Solar Salterns, Santa Pola, Alicante, Spain - clone 5C8 Genome Express 3300021391 Metagenome - Cell Enrichment Seqman application of the Lasergene software (DNASTAR Corporation) released by JGI data releasing policy No Yes emnabouhajja@gmail.com Emna Bouhajja No Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Unclassified Hypersaline water 38.1922 -0.5918 968 4 0 0 0 0 0.0 Single_particle_sort 3300032988 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep1 HSBNCT.FGM.300.1.L3 DOE Joint Genome Institute (JGI) 3300032988 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 9551175 8247 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300010958 *Microbiome Permanent Draft Mouse host associated microbial communities from Vienna, Austria Mouse cecal microbial communities from Vienna, Austria - N-Acetylneuraminic amended D2O_June DOE Joint Genome Institute (JGI) 3300010958 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes romans@mit.edu Roman Stocker No Host-associated Mammals Large intestine Digestive system Cecum Mouse cecum 48.2 16.37 113029737 111351 34 0 48 0 SRX2954897 Unrestricted 0.0 Single_particle_sort 3300034878 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells Plant RepB EcoBCT.Plant.5000.1.H5 DOE Joint Genome Institute (JGI) 3300034878 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 7808139 7244 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300010500 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.K17.16S negative DOE Joint Genome Institute (JGI) 3300010500 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 326563 468 0 0 0 0 SRX2749582 Unrestricted 0.0 Single_particle_sort 3300032900 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep3 HSBNCT.FGM.300.1.M15 DOE Joint Genome Institute (JGI) 3300032900 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 13689545 12780 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300009546 *Microbiome Permanent Draft Marine eukaryotic communities from CALCOFI LINE 67, Pacific Ocean, that are photosynthetic Marine eukaryotic communities from CALCOFI LINE 67, Pacific Ocean - CN11_C50_N6_SortLC_1 DOE Joint Genome Institute (JGI) 3300009546 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes azworden@mbari.org Alexandra Worden No Environmental Aquatic Oceanic Marine Unclassified Marine 35.0728 -125.0502 14899434 13740 8 3 5 1 SRX2933104 Unrestricted 0.0 Single_particle_sort 3300006504 *Microbiome Permanent Draft Marine eukaryotic communities from various locations to study complex ecological interactions Marine eukaryotic communities from various locations to study complex ecological interactions - Uncultured MALV JGI Plate_1_A8 Single Cell DOE Joint Genome Institute (JGI) 3300006504 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes azworden@mbari.org, twoyke@lbl.gov Alexandra Worden, Tanja Woyke No Environmental Aquatic Unclassified Marine Unclassified Marine 36.688 -122.386 5141408 6869 0 1 0 1 SRX2463554 Unrestricted 0.0 Single_particle_sort 3300007408 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D10_H0v2 DOE Joint Genome Institute (JGI) 3300007408 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 1538676 1601 0 0 0 0 SRX2938344 Unrestricted 0.0 Single_particle_sort 3300028690 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Erie, Ontario, Canada - ER10.Large.C7 DOE Joint Genome Institute (JGI) 3300028690 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.68 -79.6916 14967155 32215 8 0 9 0 Unrestricted 140.3 Single_particle_sort 3300032786 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep3 HSBNCT.FGM.300.1.F15 DOE Joint Genome Institute (JGI) 3300032786 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 8665591 8273 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007480 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D67_LANv2 DOE Joint Genome Institute (JGI) 3300007480 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 28123982 28035 6 0 12 0 SRX2939171 Unrestricted 0.0 Single_particle_sort 3300038919 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.2.2015 0410 MDM2 LHC4sed p2 16S.E17.double-peak DOE Joint Genome Institute (JGI) 3300038919 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 563054 712 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034811 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - Total cells Soil RepC EcoBCT.Soil.5000.2.L6 DOE Joint Genome Institute (JGI) 3300034811 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 27375280 29917 12 0 18 0 Unrestricted 0.0 Single_particle_sort 3300017875 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-7_E3 DOE Joint Genome Institute (JGI) 3300017875 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 3609801 4260 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020981 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera3 DOE Joint Genome Institute (JGI) 3300020981 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 6461692 6929 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010464 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.C16.Thermi DOE Joint Genome Institute (JGI) 3300010464 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 204471 284 0 0 0 0 SRX2750418 Unrestricted 0.0 Single_particle_sort 3300038931 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Sandy's Spring West, Nevada, USA - SSWsed.3.2015 0414 MDM2 SSWsed p3 16S.C4.double-peak DOE Joint Genome Institute (JGI) 3300038931 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 40.653 -119.3749 310177 423 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007469 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D57_LANMv2 DOE Joint Genome Institute (JGI) 3300007469 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 15686992 16019 6 0 10 0 SRX2939887 Unrestricted 0.0 Single_particle_sort 3300010696 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.H5.16S negative DOE Joint Genome Institute (JGI) 3300010696 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1862791 1841 0 0 1 0 SRX2750483 Unrestricted 0.0 Single_particle_sort 3300036679 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells T11 rep2 HSBNCT.T11.5000.01.I4 DOE Joint Genome Institute (JGI) 3300036679 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3919 6842377 6226 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300021152 *Microbiome Permanent Draft Investigating the Microbiome of Thiomargarita & Thiopilula Thiomargarita spp. associated microbial communities from marine sediment, the Benguela Current, Namibia - ENDO005 University of Minnesota - Twin Cities 3300021152 Metagenome - Cell Enrichment Spades 3.10 released per PI No Yes beverlyflood@mac.com Beverly Flood No Host-associated Microbial Unclassified Bacteria Unclassified marine sediment -23.0025 14.09916667 339974892 810940 40 1 114 5 0.0 Single_particle_sort 3300034839 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells PlantN RepC EcoBCT.PlantN.5000.1.K3 DOE Joint Genome Institute (JGI) 3300034839 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 5528148 5650 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300017874 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-4_I3 DOE Joint Genome Institute (JGI) 3300017874 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 6.08 7203325 7587 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300031402 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.Vis6.EtOH.1-fish+.3 DOE Joint Genome Institute (JGI) 3300031402 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 2964917 3201 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034490 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.SSM.Mag.03.J4 DOE Joint Genome Institute (JGI) 3300034490 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 7384437 4948 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034932 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_E4 DOE Joint Genome Institute (JGI) 3300034932 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 162673 220 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010465 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.J14.16S negative DOE Joint Genome Institute (JGI) 3300010465 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 224354 285 0 0 0 0 SRX2751208 Unrestricted 0.0 Single_particle_sort 3300034428 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.H3 DOE Joint Genome Institute (JGI) 3300034428 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 2435632 2566 1 0 1 0 SRX8389157 Unrestricted 0.0 Single_particle_sort 3300034261 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep3 HSBNCT.FG11.300.03.D15 DOE Joint Genome Institute (JGI) 3300034261 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 2077676 2343 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034499 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.SSM.Mag.03.N7 DOE Joint Genome Institute (JGI) 3300034499 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 6512824 4232 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300009211 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsB01-p3 DOE Joint Genome Institute (JGI) 3300009211 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 252390 337 0 0 0 0 SRX3205290 Unrestricted 0.0 Single_particle_sort 3300024033 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.C4 DOE Joint Genome Institute (JGI) 3300024033 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 15105029 16792 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300007460 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D70_LAv2 DOE Joint Genome Institute (JGI) 3300007460 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 13261075 12969 4 0 3 0 SRX2938489 Unrestricted 0.0 Single_particle_sort 3300034830 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - Total cells PlantN RepA EcoBCT.PlantN.5000.1.F6 DOE Joint Genome Institute (JGI) 3300034830 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 10547119 11754 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300032766 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July23.5000.01.C6 DOE Joint Genome Institute (JGI) 3300032766 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 3259855 3334 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300038910 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.2.2015 0410 MDM2 LHC4sed p2 16S.H11.double-peak DOE Joint Genome Institute (JGI) 3300038910 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 1205176 1317 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020796 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera14 DOE Joint Genome Institute (JGI) 3300020796 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 11685772 11595 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300017842 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-2_D3 DOE Joint Genome Institute (JGI) 3300017842 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 6.39 38036 57 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300020843 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera49 DOE Joint Genome Institute (JGI) 3300020843 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 4755506 4912 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300032991 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.Aug13.5000.01.D3 DOE Joint Genome Institute (JGI) 3300032991 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 50499865 49871 22 0 28 0 Unrestricted 0.0 Single_particle_sort 3300010484 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.N9.16S negative DOE Joint Genome Institute (JGI) 3300010484 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 304921 399 0 0 1 0 SRX2748933 Unrestricted 0.0 Single_particle_sort 3300020961 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera33 DOE Joint Genome Institute (JGI) 3300020961 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 4976921 5003 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300007489 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C19_HAv2 DOE Joint Genome Institute (JGI) 3300007489 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 39176574 39558 13 0 19 0 SRX2939121 Unrestricted 0.0 Single_particle_sort 3300028699 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Michigan, Michigan, United States - MI23.SRFL.Orng.D5 DOE Joint Genome Institute (JGI) 3300028699 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.1333 -87.0 52258996 107914 20 0 30 0 Unrestricted 72.22 Single_particle_sort 3300024148 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7061.QLV.BNCT.01.K10 DOE Joint Genome Institute (JGI) 3300024148 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 2687399 3127 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010591 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.I17.16S negative DOE Joint Genome Institute (JGI) 3300010591 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 761310 989 1 0 1 0 SRX2749579 Unrestricted 0.0 Single_particle_sort 3300007457 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D87_LANv2 DOE Joint Genome Institute (JGI) 3300007457 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 11996179 12220 8 0 7 0 SRX2939212 Unrestricted 0.0 Single_particle_sort 3300010485 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.L6.16S negative DOE Joint Genome Institute (JGI) 3300010485 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 306932 402 0 0 0 0 SRX2750231 Unrestricted 0.0 Single_particle_sort 3300010622 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.K20.16S negative DOE Joint Genome Institute (JGI) 3300010622 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1053954 1148 0 0 0 0 SRX2749607 Unrestricted 0.0 Single_particle_sort 3300020656 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera47 DOE Joint Genome Institute (JGI) 3300020656 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 8207008 8462 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300032853 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July09.5000.02.C4 DOE Joint Genome Institute (JGI) 3300032853 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 5908470 5920 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300009278 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsH01-p2 DOE Joint Genome Institute (JGI) 3300009278 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 3525157 4050 1 0 1 0 SRX3205293 Unrestricted 0.0 Single_particle_sort 3300034229 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep1 HSBNCT.FG11.300.03.L6 DOE Joint Genome Institute (JGI) 3300034229 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 806515 884 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300032909 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep1 HSBNCT.T11.300.1.C5 DOE Joint Genome Institute (JGI) 3300032909 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 3690596 3964 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034298 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Bay of Concepcion, South Pacific Ocean - Ca. Thiopilula JBCH1603RB1_Rep3_CE DOE Joint Genome Institute (JGI) 3300034298 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -36.51 -73.125 5469899 5697 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010509 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.B14.16S negative DOE Joint Genome Institute (JGI) 3300010509 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 397836 520 0 0 0 0 SRX2750993 Unrestricted 0.0 Single_particle_sort 3300032802 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep1 HSBNCT.T11.300.1.E6 DOE Joint Genome Institute (JGI) 3300032802 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 7801781 8220 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300047080 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.D8 DOE Joint Genome Institute (JGI) 3300047080 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 21109894 21951 6 0 9 0 Unrestricted 0.0 Single_particle_sort 3300036267 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_F12 DOE Joint Genome Institute (JGI) 3300036267 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 23485 33 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300047209 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_HPG2_D3 DOE Joint Genome Institute (JGI) 3300047209 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 36482056 70670 26 0 57 0 Restricted 89.09 Single_particle_sort 3300032968 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep3 HSBNCT.FGM.300.1.C14 DOE Joint Genome Institute (JGI) 3300032968 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 6743031 6208 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300049397 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.J7 DOE Joint Genome Institute (JGI) 3300049397 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 23723558 24676 10 0 12 0 Unrestricted 0.0 Single_particle_sort 3300020998 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera67 DOE Joint Genome Institute (JGI) 3300020998 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 8139853 7935 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300010568 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.C22.16S negative DOE Joint Genome Institute (JGI) 3300010568 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 631530 863 0 0 0 0 SRX2749668 Unrestricted 0.0 Single_particle_sort 3300032886 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.Aug07.5000.01.D3 DOE Joint Genome Institute (JGI) 3300032886 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 36382369 36346 14 0 17 0 Unrestricted 0.0 Single_particle_sort 3300020929 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera36 DOE Joint Genome Institute (JGI) 3300020929 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 9532866 9964 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300033033 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep3 HSBNCT.N11.300.1.M15 DOE Joint Genome Institute (JGI) 3300033033 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 4090858 4457 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034401 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep1 HSBNCT.FG11.5000.02.F3 DOE Joint Genome Institute (JGI) 3300034401 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 19610203 19489 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300010643 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.B8.Aquificae DOE Joint Genome Institute (JGI) 3300010643 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1044550 1272 0 0 0 0 SRX2750255 Unrestricted 0.0 Single_particle_sort 3300024151 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7061.QLV.BNCT.01.C7 DOE Joint Genome Institute (JGI) 3300024151 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 2977170 3364 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036250 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.M6 DOE Joint Genome Institute (JGI) 3300036250 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 2704586 2812 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020822 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera8 DOE Joint Genome Institute (JGI) 3300020822 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 3024210 3050 1 0 3 0 Unrestricted 0.0 Single_particle_sort 3300047268 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_AV3_C3 DOE Joint Genome Institute (JGI) 3300047268 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 13296423 22863 16 0 31 0 Restricted 62.5 Single_particle_sort 3300024488 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Green sulfur bacteria associated microbial communities from Trout Bog Lake, Wisconsin, USA - Chlorobi peak TB 13 DOE Joint Genome Institute (JGI) 3300024488 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 46.0412 -89.6861 6264142 6426 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020964 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera17 DOE Joint Genome Institute (JGI) 3300020964 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 5405407 5124 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300032994 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July23.5000.01.C5 DOE Joint Genome Institute (JGI) 3300032994 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 8533890 8454 1 0 4 0 Unrestricted 0.0 Single_particle_sort 3300010481 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.G17.16S negative DOE Joint Genome Institute (JGI) 3300010481 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 342991 372 1 0 0 0 SRX2749577 Unrestricted 0.0 Single_particle_sort 3300010594 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.H9.16S negative DOE Joint Genome Institute (JGI) 3300010594 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 771077 1004 0 0 0 0 SRX2748924 Unrestricted 0.0 Single_particle_sort 3300020965 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera69 DOE Joint Genome Institute (JGI) 3300020965 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 5460398 5629 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300032995 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July23.5000.01.C7 DOE Joint Genome Institute (JGI) 3300032995 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 3101173 3206 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300046940 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.J4 DOE Joint Genome Institute (JGI) 3300046940 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 16452165 16554 3 0 7 0 Unrestricted 0.0 Single_particle_sort 3300044909 *Microbiome Permanent Draft Deep subseafloor coalbed microbial communities from Japanese EEZ, North Pacific Ocean Enriched cells of subseafloor coalbed in Japanese EEZ, North Pacific Ocean - Sorted_minimetagenome_CSP506582_6119.15R2.36.T2.MeAM.D4 DOE Joint Genome Institute (JGI) 3300044909 Metagenome - Cell Enrichment metaspades v. 3.14.1 released based on JGI ITS Yes Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Terrestrial Unclassified Deep subsurface Unclassified Subseafloor coal bed 41.1766 142.2005 1163629 3269 4 0 2 0 Unrestricted 1824.12 Single_particle_sort 3300048650 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.magnifica.extraction.2 DOE Joint Genome Institute (JGI) 3300048650 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 17479456 17813 5 0 9 0 Unrestricted 0.0 Single_particle_sort 3300010595 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.L6.16S negative DOE Joint Genome Institute (JGI) 3300010595 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 792564 1023 0 0 0 0 SRX2750608 Unrestricted 0.0 Single_particle_sort 3300020638 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera7 DOE Joint Genome Institute (JGI) 3300020638 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 5787219 5702 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300033088 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep2 HSBNCT.N11.300.1.D11 DOE Joint Genome Institute (JGI) 3300033088 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2651817 2834 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034366 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells T11 rep1 HSBNCT.T11.5000.01.F5 DOE Joint Genome Institute (JGI) 3300034366 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3919 3684778 3826 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034852 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - Total cells SoilN RepA EcoBCT.SoilN.5000.1.F6 DOE Joint Genome Institute (JGI) 3300034852 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 11186575 12745 3 0 6 0 Unrestricted 0.0 Single_particle_sort 3300034589 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.D3 DOE Joint Genome Institute (JGI) 3300034589 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 2859805 2960 1 0 1 0 SRX8394676 Unrestricted 0.0 Single_particle_sort 3300034264 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep2 HSBNCT.FG11.300.03.N10 DOE Joint Genome Institute (JGI) 3300034264 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 9132569 8704 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032572 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep3 HSBNCT.T11.300.1.N14 DOE Joint Genome Institute (JGI) 3300032572 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 3669941 3498 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300036342 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.N5 DOE Joint Genome Institute (JGI) 3300036342 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 2833266 3063 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300033000 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July02.5000.02.D4 DOE Joint Genome Institute (JGI) 3300033000 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 21723935 23232 9 0 9 0 Unrestricted 0.0 Single_particle_sort 3300036198 *Microbiome Permanent Draft Marine microalgae viral communities from raceway pond in Palavas-les-Flots, France Enriched cells of marine microalgae from raceway pond in Palavas-les-Flots, France - 11.09.P3 MEGA virome DOE Joint Genome Institute (JGI) 3300036198 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes guillaume.blanc@mio.osupytheas.fr Guillaume Blanc No Host-associated Algae Unclassified Microalgae Unclassified marine microalgae 43.5198 3.9073 25324303 29228 13 0 21 0 Unrestricted 0.0 Single_particle_sort 3300034959 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells SoilN RepA EcoBCT.SoilN.5000.1.E5 DOE Joint Genome Institute (JGI) 3300034959 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 13867704 15482 5 0 4 0 Unrestricted 0.0 Single_particle_sort 3300007473 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C08_HAv2 DOE Joint Genome Institute (JGI) 3300007473 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 21592515 20677 7 0 8 0 SRX2939757 Unrestricted 0.0 Single_particle_sort 3300032877 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep1 HSBNCT.FGM.300.1.M4 DOE Joint Genome Institute (JGI) 3300032877 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 12131989 10398 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034265 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep3 HSBNCT.FG11.300.03.C14 DOE Joint Genome Institute (JGI) 3300034265 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 2149778 1937 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036129 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_F5 DOE Joint Genome Institute (JGI) 3300036129 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 50079 48 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300024155 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.F6 DOE Joint Genome Institute (JGI) 3300024155 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 3099464 3665 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036232 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_H8 DOE Joint Genome Institute (JGI) 3300036232 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 63969 84 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034803 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - Total cells Soil RepB EcoBCT.Soil.5000.2.I3 DOE Joint Genome Institute (JGI) 3300034803 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 10938199 12708 3 0 6 0 Unrestricted 0.0 Single_particle_sort 3300024000 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States - CellEnrichment NoTemplateControl JGI 7047.SedFree.SYBR.01.J2 DOE Joint Genome Institute (JGI) 3300024000 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 2880425 2546 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300024154 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.E13 DOE Joint Genome Institute (JGI) 3300024154 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 2910678 3552 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010617 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.M4.16S negative DOE Joint Genome Institute (JGI) 3300010617 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 932706 1117 0 0 0 0 SRX2750470 Unrestricted 0.0 Single_particle_sort 3300028939 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Michigan, Michigan, United States - MI23.SRFL.Orng.D5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028939 Metagenome - Cell Enrichment SPAdes v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.1333 -87.0 31602591 39334 12 0 14 0 Unrestricted 116.25 Single_particle_sort 3300014378 *Microbiome Finished Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India Lab enriched petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India - point GR3 UA 51 Life Technologies 3300014378 Metagenome - Cell Enrichment MetaVelvet v1.2.01 released by JGI data releasing policy No Yes sarkar.jayeeta12@gmail.com Jayeeta Sarkar No Engineered Bioremediation Unclassified Hydrocarbon Unclassified petroleum sludge 26.18471 91.80725 289472821 1196954 771 3 1319 7 SRX2512231 0.0 Single_particle_sort 3300036323 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.F7 DOE Joint Genome Institute (JGI) 3300036323 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 7245393 7590 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020800 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera65 DOE Joint Genome Institute (JGI) 3300020800 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 12248808 11996 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020651 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera27 DOE Joint Genome Institute (JGI) 3300020651 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 7386840 7416 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020888 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera44 DOE Joint Genome Institute (JGI) 3300020888 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 6676590 7160 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300010596 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.B19.16S negative DOE Joint Genome Institute (JGI) 3300010596 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 768672 1024 0 0 0 0 SRX2750449 Unrestricted 0.0 Single_particle_sort 3300034918 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_D3 DOE Joint Genome Institute (JGI) 3300034918 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 2412632 2292 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300032996 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July30.5000.01.C6 DOE Joint Genome Institute (JGI) 3300032996 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 3957344 4072 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300020966 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera13 DOE Joint Genome Institute (JGI) 3300020966 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 6074445 5844 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300033017 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep2 HSBNCT.N11.300.1.N8 DOE Joint Genome Institute (JGI) 3300033017 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 4761218 4953 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020791 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera78 DOE Joint Genome Institute (JGI) 3300020791 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 10742495 10655 6 0 4 0 Unrestricted 0.0 Single_particle_sort 3300034365 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells T11 rep1 HSBNCT.T11.5000.01.E3 DOE Joint Genome Institute (JGI) 3300034365 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3919 8116637 8173 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300034266 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep3 HSBNCT.FG11.300.03.D14 DOE Joint Genome Institute (JGI) 3300034266 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 1740110 1519 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007492 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C44_LANv2 DOE Joint Genome Institute (JGI) 3300007492 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 40591655 41263 13 0 18 0 SRX2939116 Unrestricted 0.0 Single_particle_sort 3300028682 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Michigan, Michigan, United States - control MI23.SRF DOE Joint Genome Institute (JGI) 3300028682 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Engineered Industrial production Sheath fluid Chemical products Unclassified sheath fluid 37.9313 -122.0217 495900 1436 1 0 1 0 Unrestricted 8.93 Single_particle_sort 3300024156 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7061.QLV.BNCT.02.L10 DOE Joint Genome Institute (JGI) 3300024156 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 3783133 4145 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300038879 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - PDU D8.9.MDM2 PDU D8 p9 16S.E11.double-peak DOE Joint Genome Institute (JGI) 3300038879 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 497423 530 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010600 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.E7.16S negative DOE Joint Genome Institute (JGI) 3300010600 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 941466 1057 0 0 0 0 SRX2750611 Unrestricted 0.0 Single_particle_sort 3300017850 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-6_I3 DOE Joint Genome Institute (JGI) 3300017850 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 2275374 2745 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036332 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.K8 DOE Joint Genome Institute (JGI) 3300036332 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 5108741 5438 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300032881 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July02.5000.02.C4 DOE Joint Genome Institute (JGI) 3300032881 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 6323490 6484 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300021528 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from agricultural soil in Iowa, United States - IA12soil_GW_FP2(+) DOE Joint Genome Institute (JGI) 3300021528 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes aaron.wright@pnnl.gov; twoyke@lbl.gov Aaron Wright; Tanja Woyke No Environmental Terrestrial Agricultural land Soil Unclassified soil 41.9167 -93.75 2646451 3374 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300020648 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera42 DOE Joint Genome Institute (JGI) 3300020648 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 7296436 7148 1 0 4 0 Unrestricted 0.0 Single_particle_sort 3300021149 *Microbiome Permanent Draft Investigating the Microbiome of Thiomargarita & Thiopilula Thiomargarita spp. associated microbial communities from marine sediment, the Benguela Current, Namibia - TCHAIN004 University of Minnesota - Twin Cities 3300021149 Metagenome - Cell Enrichment Spades 3.10 released by JGI data releasing policy No Yes beverlyflood@mac.com Beverly Flood No Host-associated Microbial Unclassified Bacteria Unclassified marine sediment -23.0025 14.09916667 171686447 291293 19 2 37 2 0.0 Single_particle_sort 3300010688 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.K8.16S negative DOE Joint Genome Institute (JGI) 3300010688 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1385274 1690 0 0 0 0 SRX2750706 Unrestricted 0.0 Single_particle_sort 3300047130 *Microbiome Permanent Draft Freshwater fungal communities from various locations Enriched cells from freshwater from Ford Lake, Michigan, United States - PSC047 Chytrid MDA DOE Joint Genome Institute (JGI) 3300047130 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes tyjames@umich.edu Timothy Y. James No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.230183 -83.601263 12463228 17879 1 3 1 2 Restricted 0.0 Single_particle_sort 3300036223 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.H9 DOE Joint Genome Institute (JGI) 3300036223 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 2674750 2718 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300024017 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.F11 DOE Joint Genome Institute (JGI) 3300024017 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 5274922 5975 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020768 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera59 DOE Joint Genome Institute (JGI) 3300020768 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 8240421 8058 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300046930 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment.pos_JMV.Tmarg.Fil1.2.G3 DOE Joint Genome Institute (JGI) 3300046930 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 17587853 18026 5 0 8 0 Unrestricted 0.0 Single_particle_sort 3300010477 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.E8.16S negative DOE Joint Genome Institute (JGI) 3300010477 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 275824 357 0 0 0 0 SRX2748786 Unrestricted 0.0 Single_particle_sort 3300031429 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.Vis6.EtOH.1-fish+.1 DOE Joint Genome Institute (JGI) 3300031429 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 8047141 9000 6 0 6 0 Unrestricted 0.0 Single_particle_sort 3300017867 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-6_D3 DOE Joint Genome Institute (JGI) 3300017867 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 5300704 5790 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034624 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.G3 DOE Joint Genome Institute (JGI) 3300034624 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1511378 1673 1 0 1 0 SRX8395080 Unrestricted 0.0 Single_particle_sort 3300020794 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera58 DOE Joint Genome Institute (JGI) 3300020794 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 11027207 11258 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300032764 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep1 HSBNCT.FGM.300.1.E6 DOE Joint Genome Institute (JGI) 3300032764 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 3451285 3517 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007690 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C37_wellG01 DOE Joint Genome Institute (JGI) 3300007690 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 10798 18 0 0 0 0 SRX3202755 Unrestricted 0.0 Single_particle_sort 3300020795 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera78 DOE Joint Genome Institute (JGI) 3300020795 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 11637313 11331 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300033043 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep2 HSBNCT.N11.300.1.L11 DOE Joint Genome Institute (JGI) 3300033043 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3045351 3172 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032765 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.Aug20.5000.01 .C6 DOE Joint Genome Institute (JGI) 3300032765 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 9239829 9548 5 0 7 0 Unrestricted 0.0 Single_particle_sort 3300010633 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.G7.16S negative DOE Joint Genome Institute (JGI) 3300010633 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1157897 1216 0 0 0 0 SRX2750614 Unrestricted 0.0 Single_particle_sort 3300034361 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Bay of Concepcion, South Pacific Ocean - Ca. Marithioploca JBCH16032A2_Rep4_CE DOE Joint Genome Institute (JGI) 3300034361 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -36.51 -73.125 9209847 9639 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300006759 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C09_wellB01 DOE Joint Genome Institute (JGI) 3300006759 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 490638 630 0 0 0 0 SRX3200236 Unrestricted 0.0 Single_particle_sort 3300020654 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera90 DOE Joint Genome Institute (JGI) 3300020654 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 7795043 7895 0 0 4 0 Unrestricted 0.0 Single_particle_sort 3300019109 *Microbiome Permanent Draft Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India Lab enriched petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India - point GR3 NA Spades_127 Life Technologies 3300019109 Metagenome - Cell Enrichment SPAdes 3.10.1 released by JGI data releasing policy No Yes sarkar.jayeeta12@gmail.com Jayeeta Sarkar No Engineered Bioremediation Unclassified Hydrocarbon Unclassified petroleum sludge 26.18471 91.80725 141284698 269015 79 1 117 1 SRX2512230 0.0 Single_particle_sort 3300036700 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep1 HSBNCT.FG11.5000.02.E3 DOE Joint Genome Institute (JGI) 3300036700 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 4574256 4942 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300033138 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep1 HSBNCT.N11.300.1.C3 DOE Joint Genome Institute (JGI) 3300033138 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 1400351 1514 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020655 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera66 DOE Joint Genome Institute (JGI) 3300020655 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 7667663 7980 6 0 10 0 Unrestricted 0.0 Single_particle_sort 3300038907 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.2.2015 0410 MDM2 LHC4sed p2 16S.E6.double-peak DOE Joint Genome Institute (JGI) 3300038907 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 502781 608 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300024022 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.E5 DOE Joint Genome Institute (JGI) 3300024022 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 6846679 7474 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010486 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.G18.16S negative DOE Joint Genome Institute (JGI) 3300010486 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 335150 410 0 0 0 0 SRX2749583 Unrestricted 0.0 Single_particle_sort 3300021460 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States - Total_DNA_C DOE Joint Genome Institute (JGI) 3300021460 Metagenome - Cell Enrichment spades v. 3.11.1-check Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 77637132 175248 188 0 268 0 Unrestricted 13.06 Single_particle_sort 3300033022 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep3 HSBNCT.N11.300.1.D13 DOE Joint Genome Institute (JGI) 3300033022 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2989336 3134 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300005130 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME DR18B48 DOE Joint Genome Institute (JGI) 3300005130 Metagenome - Cell Enrichment spades v. 3.0.0 Nikos: made them private temporary due to Tanja;s request for quality control check No Yes wagner@microbial-ecology.net Michael Wagner Yes 28386012.0 Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 51868340 57484 22 0 30 0 SRX2482138 Unrestricted 0.0 Single_particle_sort 3300034897 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - Total cells Soil RepC EcoBCT.Soil.5000.2.L3 DOE Joint Genome Institute (JGI) 3300034897 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 7495449 8547 5 0 7 0 Unrestricted 0.0 Single_particle_sort 3300024138 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells of freshwater protists from Biology Centre CAS, Ceske Budejovice, Czech Republic - ZER3_5Endo4_I17 DOE Joint Genome Institute (JGI) 3300024138 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Freshwater Unclassified enrichment culture 48.9774 14.4478 1757778 1740 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034329 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep2 HSBNCT.FG11.5000.02.I3 DOE Joint Genome Institute (JGI) 3300034329 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 12291973 13285 9 0 9 0 Unrestricted 0.0 Single_particle_sort 3300034398 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells T11 rep1 HSBNCT.T11.5000.01.E6 DOE Joint Genome Institute (JGI) 3300034398 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3919 6806878 7172 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300020833 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera19 DOE Joint Genome Institute (JGI) 3300020833 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 3847789 3925 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300038883 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - PDU D8.9.MDM2 PDU D8 p9 16S.F6.double-seq DOE Joint Genome Institute (JGI) 3300038883 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 1399398 1571 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300046952 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.I5 DOE Joint Genome Institute (JGI) 3300046952 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 15545113 15700 7 0 9 0 Unrestricted 0.0 Single_particle_sort 3300032885 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July16.5000.01.D4 DOE Joint Genome Institute (JGI) 3300032885 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 32140179 33035 9 0 13 0 Unrestricted 0.0 Single_particle_sort 3300021457 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States - 4hA_Boncat_plus DOE Joint Genome Institute (JGI) 3300021457 Metagenome - Cell Enrichment spades v. 3.11.1-check Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 19206082 61653 57 0 71 1 Unrestricted 66.27 Single_particle_sort 3300010453 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.C15.16S negative DOE Joint Genome Institute (JGI) 3300010453 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 97066 147 0 0 0 0 SRX2749420 Unrestricted 0.0 Single_particle_sort 3300034840 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells PlantN RepC EcoBCT.PlantN.5000.1.K4 DOE Joint Genome Institute (JGI) 3300034840 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 7146833 7143 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300007582 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge DR18_LAN DOE Joint Genome Institute (JGI) 3300007582 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 69238448 70531 16 0 30 0 SRX2932857 Unrestricted 0.0 Single_particle_sort 3300007388 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C32_wellF02 DOE Joint Genome Institute (JGI) 3300007388 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 972415 1237 0 0 1 0 SRX3200658 Unrestricted 0.0 Single_particle_sort 3300032483 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep3 HSBNCT.T11.300.1.L14 DOE Joint Genome Institute (JGI) 3300032483 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 4368744 4041 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300047086 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from reagents in Basse-Terre, Guadeloupe - No.Template.Control.reagent_JMV.Tmarg.Fil1.2.E1 DOE Joint Genome Institute (JGI) 3300047086 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp reagent 16.2781 -61.5582 17345357 18639 4 0 8 0 Unrestricted 0.0 Single_particle_sort 3300005134 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME D20B70 DOE Joint Genome Institute (JGI) 3300005134 Metagenome - Cell Enrichment spades v. 3.0.0 Nikos: made them private temporary due to Tanja;s request for quality control check No Yes wagner@microbial-ecology.net Michael Wagner Yes 28386012.0 Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 95798763 103167 30 0 48 0 SRX2482152 Unrestricted 0.0 Single_particle_sort 3300020828 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera77 DOE Joint Genome Institute (JGI) 3300020828 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 3497388 3492 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300046931 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment.pos_JMV.Tmarg.Fil1.2.J3 DOE Joint Genome Institute (JGI) 3300046931 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 17236840 17384 7 0 6 0 Unrestricted 0.0 Single_particle_sort 3300047262 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_AV2_C3 DOE Joint Genome Institute (JGI) 3300047262 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 26300770 50317 10 0 39 0 Restricted 772.73 Single_particle_sort 3300020899 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera87 DOE Joint Genome Institute (JGI) 3300020899 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7608068 7455 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300032869 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.June20.5000.01.D4 DOE Joint Genome Institute (JGI) 3300032869 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 35354926 35777 13 0 21 0 Unrestricted 0.0 Single_particle_sort 3300021464 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States - 21hC_Boncat_minus DOE Joint Genome Institute (JGI) 3300021464 Metagenome - Cell Enrichment spades v. 3.11.1-check Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 117600969 317189 164 0 276 0 Unrestricted 21.89 Single_particle_sort 3300010562 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.I15.16S negative DOE Joint Genome Institute (JGI) 3300010562 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 623833 839 0 0 0 0 SRX2751215 Unrestricted 0.0 Single_particle_sort 3300005477 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis roots microbial communities from North Carolina, USA - Arabidopsis Col MF FACS sort 2 DOE Joint Genome Institute (JGI) 3300005477 Metagenome - Cell Enrichment MEGAHIT v. 0.2.0 Yes Yes scott.yourstone81@gmail.com, scott.yourstone81@gmail.com; dangl@email.unc.edu Scott Yourstone, Scott Yourstone; Jeff Dangl No Host-associated Plants Unclassified Roots Unclassified Arabidopsis roots 35.9077 -79.0508 2387465 10995 1 0 22 0 SRX2836933 Unrestricted 0.0 Single_particle_sort 3300032962 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July30.5000.01.D4 DOE Joint Genome Institute (JGI) 3300032962 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 40458723 40276 17 0 19 0 Unrestricted 0.0 Single_particle_sort 3300020992 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera38 DOE Joint Genome Institute (JGI) 3300020992 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 8019122 7506 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034443 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.PSCntrl.SYBR.02.J7 DOE Joint Genome Institute (JGI) 3300034443 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 1504108 1714 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010601 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.B14.Aquificae DOE Joint Genome Institute (JGI) 3300010601 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 848752 1072 0 0 0 0 SRX2750341 Unrestricted 0.0 Single_particle_sort 3300036256 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.N9 DOE Joint Genome Institute (JGI) 3300036256 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 898976 961 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034844 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - Total cells PlantN RepC EcoBCT.PlantN.5000.1.L5 DOE Joint Genome Institute (JGI) 3300034844 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 11892968 11865 4 0 6 0 Unrestricted 0.0 Single_particle_sort 3300032808 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July02.5000.02.D3 DOE Joint Genome Institute (JGI) 3300032808 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 19901052 20584 5 0 9 0 Unrestricted 0.0 Single_particle_sort 3300034292 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Benguela upwelling system, South Atlantic Ocean - Beggiatoaceae JNN162BE_Rep3_CE DOE Joint Genome Institute (JGI) 3300034292 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beverlyflood@mac.com Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -23.0 14.0692 74568 67 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034845 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - Total cells PlantN RepC EcoBCT.PlantN.5000.1.L6 DOE Joint Genome Institute (JGI) 3300034845 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 16089066 17991 5 0 7 0 Unrestricted 0.0 Single_particle_sort 3300047131 *Microbiome Permanent Draft Freshwater fungal communities from various locations Enriched cells from freshwater from Lake Erie, Ontario, Canada - PSC179 Chytrid MDA DOE Joint Genome Institute (JGI) 3300047131 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes tyjames@umich.edu Timothy Y. James No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.828567 -82.501117 14823574 20330 0 2 0 2 Restricted 0.0 Single_particle_sort 3300032880 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July09.5000.02.D4 DOE Joint Genome Institute (JGI) 3300032880 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 18832584 20052 6 0 5 0 Unrestricted 0.0 Single_particle_sort 3300017851 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-7_D3 DOE Joint Genome Institute (JGI) 3300017851 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 2321898 2822 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036355 *Microbiome Permanent Draft Marine microalgae viral communities from raceway pond in Palavas-les-Flots, France Enriched cells of marine microalgae from raceway pond in Palavas-les-Flots, France - 17.04.P2_hot MEGA virome DOE Joint Genome Institute (JGI) 3300036355 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes guillaume.blanc@mio.osupytheas.fr Guillaume Blanc No Host-associated Algae Unclassified Microalgae Unclassified marine microalgae 43.5198 3.9073 78573839 84300 19 0 17 0 Unrestricted 0.0 Single_particle_sort 3300007694 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C80_wellF05 DOE Joint Genome Institute (JGI) 3300007694 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 35220 74 0 0 0 0 SRX3202253 Unrestricted 0.0 Single_particle_sort 3300034836 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - Total cells PlantN RepB EcoBCT.PlantN.5000.1.I4 DOE Joint Genome Institute (JGI) 3300034836 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 13855056 15320 7 0 8 0 Unrestricted 0.0 Single_particle_sort 3300010699 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.C11.16S negative DOE Joint Genome Institute (JGI) 3300010699 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1923298 1926 0 0 0 0 SRX2750312 Unrestricted 0.0 Single_particle_sort 3300007466 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge DR17_LAN DOE Joint Genome Institute (JGI) 3300007466 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 14486935 14910 4 0 6 0 SRX2932863 Unrestricted 0.0 Single_particle_sort 3300020790 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera84 DOE Joint Genome Institute (JGI) 3300020790 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 10643770 10639 5 0 4 0 Unrestricted 0.0 Single_particle_sort 3300010628 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.B17.16S negative DOE Joint Genome Institute (JGI) 3300010628 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1093609 1182 0 0 0 0 SRX2751558 Unrestricted 0.0 Single_particle_sort 3300020667 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera6 DOE Joint Genome Institute (JGI) 3300020667 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 11217199 11182 4 0 3 0 Unrestricted 0.0 Single_particle_sort 3300024142 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.I10 DOE Joint Genome Institute (JGI) 3300024142 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 2010822 2021 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300007695 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C50_wellA05 DOE Joint Genome Institute (JGI) 3300007695 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 18229 35 0 0 0 0 SRX3201143 Unrestricted 0.0 Single_particle_sort 3300034373 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep2 HSBNCT.FG11.5000.02.I6 DOE Joint Genome Institute (JGI) 3300034373 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 11768464 12569 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300017848 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-2_K3 DOE Joint Genome Institute (JGI) 3300017848 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 6.39 1335643 1343 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036704 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep2 HSBNCT.FG11.5000.02.H5 DOE Joint Genome Institute (JGI) 3300036704 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 6764479 6719 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300020650 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera13 DOE Joint Genome Institute (JGI) 3300020650 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 6908656 7278 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020801 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera76 DOE Joint Genome Institute (JGI) 3300020801 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 12237831 12270 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300020747 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera49 DOE Joint Genome Institute (JGI) 3300020747 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5118860 5599 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300036705 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep2 HSBNCT.FG11.5000.02.I4 DOE Joint Genome Institute (JGI) 3300036705 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 11096964 12141 3 0 6 0 Unrestricted 0.0 Single_particle_sort 3300034841 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells PlantN RepC EcoBCT.PlantN.5000.1.K5 DOE Joint Genome Institute (JGI) 3300034841 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 17478100 18504 6 0 7 0 Unrestricted 0.0 Single_particle_sort 3300034963 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells Plant RepC EcoBCT.Plant.5000.1.K5 DOE Joint Genome Institute (JGI) 3300034963 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 11800877 12466 3 0 6 0 Unrestricted 0.0 Single_particle_sort 3300010537 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.K14.16S negative DOE Joint Genome Institute (JGI) 3300010537 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 551362 718 0 0 0 0 SRX2750382 Unrestricted 0.0 Single_particle_sort 3300010604 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.L9.16S negative DOE Joint Genome Institute (JGI) 3300010604 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 847964 1075 0 0 0 0 SRX2750276 Unrestricted 0.0 Single_particle_sort 3300017855 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-7_C3 DOE Joint Genome Institute (JGI) 3300017855 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 2671833 3144 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300014372 *Microbiome Permanent Draft Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India Lab enriched petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India - point GR3 NA V_21 Life Technologies 3300014372 Metagenome - Cell Enrichment MetaVelvet v1.2.01 released by JGI data releasing policy No Yes sarkar.jayeeta12@gmail.com Jayeeta Sarkar No Engineered Bioremediation Unclassified Hydrocarbon Unclassified petroleum sludge 26.18471 91.80725 105811629 459226 35 0 144 0 SRX2512230 0.0 Single_particle_sort 3300021533 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from gastrointestinal tract of the lab mouse from Pacific Northwest National Laboratory (PNNL), Richland, Washington, United States - LIM_B_Water_Pos DOE Joint Genome Institute (JGI) 3300021533 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes aaron.wright@pnnl.gov; twoyke@lbl.gov Aaron Wright; Tanja Woyke No Host-associated Mammals Unclassified Digestive system Unclassified gastrointestinal tract 46.0 -119.0 11583740 14341 5 0 9 0 Unrestricted 0.0 Single_particle_sort 3300032937 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep2 HSBNCT.FGM.300.1.F10 DOE Joint Genome Institute (JGI) 3300032937 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 6683666 6255 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300047237 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_HPG1_C3 DOE Joint Genome Institute (JGI) 3300047237 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 17983584 35299 10 0 24 0 Restricted 128.44 Single_particle_sort 3300010605 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.I8.16S negative DOE Joint Genome Institute (JGI) 3300010605 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 883788 1079 0 0 0 0 SRX2750261 Unrestricted 0.0 Single_particle_sort 3300036687 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells N11 rep1 HSBNCT.N11.5000.01.E4 DOE Joint Genome Institute (JGI) 3300036687 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3921 3817084 4017 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300024006 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from gastrointestinal tract of the lab mouse from Pacific Northwest National Laboratory (PNNL), Richland, Washington, United States - LIM_F_Vancomycin_Neg DOE Joint Genome Institute (JGI) 3300024006 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes aaron.wright@pnnl.gov; twoyke@lbl.gov Aaron Wright; Tanja Woyke No Host-associated Mammals Unclassified Digestive system Unclassified gastrointestinal tract 46.0 -119.0 3702709 3802 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300017854 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-6_K3 DOE Joint Genome Institute (JGI) 3300017854 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 2724908 3225 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300046934 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment.pos_JMV.Tmarg.Fil1.2.E3 DOE Joint Genome Institute (JGI) 3300046934 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 25352090 25876 10 0 14 0 Unrestricted 0.0 Single_particle_sort 3300005131 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME DR12B42 DOE Joint Genome Institute (JGI) 3300005131 Metagenome - Cell Enrichment spades v. 3.0.0 Nikos: made them private temporary due to Tanja;s request for quality control check No Yes wagner@microbial-ecology.net Michael Wagner Yes 28386012.0 Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 61550879 64557 23 0 32 0 SRX2482147 Unrestricted 0.0 Single_particle_sort 3300005119 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrospira DOME C01B31 DOE Joint Genome Institute (JGI) 3300005119 Metagenome - Cell Enrichment spades v. 3.0.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 3279990 3582 1 0 2 0 SRX2482140 Unrestricted 0.0 Single_particle_sort 3300046935 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment.pos_JMV.Tmarg.Fil1.2.H3 DOE Joint Genome Institute (JGI) 3300046935 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 22862488 23713 8 0 10 0 Unrestricted 0.0 Single_particle_sort 3300021029 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera21 DOE Joint Genome Institute (JGI) 3300021029 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 11083169 11367 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300023389 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities from Utah, United States - BONCAT_SYTO_Terrestrial_sediment - 6 DOE Joint Genome Institute (JGI) 3300023389 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 119787883 302703 145 0 283 1 Unrestricted 21.41 Single_particle_sort 3300036238 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_E10 DOE Joint Genome Institute (JGI) 3300036238 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 23760 31 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300046946 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.G5 DOE Joint Genome Institute (JGI) 3300046946 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 12315247 13190 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300036701 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep1 HSBNCT.FG11.5000.02.E4 DOE Joint Genome Institute (JGI) 3300036701 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 4746796 5165 5 0 3 0 Unrestricted 0.0 Single_particle_sort 3300020804 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera55 DOE Joint Genome Institute (JGI) 3300020804 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 12621507 13198 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300036192 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Santa Monica Basin, California, United States - ANME aggregate JGI_Orphan.7059.BNCT.2.L3 DOE Joint Genome Institute (JGI) 3300036192 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.7988 -118.6476 2439179 2877 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300047077 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.N8 DOE Joint Genome Institute (JGI) 3300047077 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 12239309 11830 2 0 6 0 Unrestricted 0.0 Single_particle_sort 3300009207 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsH03-p3 DOE Joint Genome Institute (JGI) 3300009207 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 156605 218 0 0 0 0 SRX3205498 Unrestricted 0.0 Single_particle_sort 3300020805 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera15 DOE Joint Genome Institute (JGI) 3300020805 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 13063607 13409 4 0 3 0 Unrestricted 0.0 Single_particle_sort 3300020632 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera17 DOE Joint Genome Institute (JGI) 3300020632 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 3967609 3891 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034858 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - Total cells SoilN RepB EcoBCT.SoilN.5000.1.I5 DOE Joint Genome Institute (JGI) 3300034858 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 10070180 10738 4 0 3 0 Unrestricted 0.0 Single_particle_sort 3300033006 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep3 HSBNCT.N11.300.1.M14 DOE Joint Genome Institute (JGI) 3300033006 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3211252 3461 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300007691 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C43_wellH01 DOE Joint Genome Institute (JGI) 3300007691 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 16716 29 0 0 0 0 SRX3202758 Unrestricted 0.0 Single_particle_sort 3300009067 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Santa Monica Basin, CA to study methane oxidation - BONCAT_CE_7061-ConsC08 DOE Joint Genome Institute (JGI) 3300009067 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes hatzenpichler@caltech.edu, roland.hatzenpichler@montana.edu; vorphan@gps.caltech.edu Hatzenpichler, Roland Hatzenpichler; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 33.789 -119.2284 96240 140 0 0 0 0 SRX3204834 Unrestricted 0.0 Single_particle_sort 3300032773 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep1 HSBNCT.T11.300.1.D6 DOE Joint Genome Institute (JGI) 3300032773 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 7008374 7397 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300007399 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C14_wellC02 DOE Joint Genome Institute (JGI) 3300007399 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 1889825 2337 0 0 0 0 SRX3200261 Unrestricted 0.0 Single_particle_sort 3300034360 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Bay of Concepcion, South Pacific Ocean - Ca. Thiopilula JBCH1603A1_Rep4_CE DOE Joint Genome Institute (JGI) 3300034360 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -36.51 -73.125 3821267 4014 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010026 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater treatment plant in Klosterneuburg, Austria - C40_LAv3 DOE Joint Genome Institute (JGI) 3300010026 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Active sludge 48.3 16.2 5569970 5623 2 0 2 0 SRX2165348 Unrestricted 0.0 Single_particle_sort 3300017856 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-7_F3 DOE Joint Genome Institute (JGI) 3300017856 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 2857790 3385 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300024004 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.E3 DOE Joint Genome Institute (JGI) 3300024004 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 2881934 3373 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034400 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells N11 rep2 HSBNCT.N11.5000.01.I4 DOE Joint Genome Institute (JGI) 3300034400 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3921 5111254 5476 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034488 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.SSM.Mag.03.I8 DOE Joint Genome Institute (JGI) 3300034488 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 7125461 4970 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300049418 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.D11 DOE Joint Genome Institute (JGI) 3300049418 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 2605884 2947 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300024005 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.H6 DOE Joint Genome Institute (JGI) 3300024005 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 3045620 3425 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300024150 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7061.QLV.BNCT.01.G4 DOE Joint Genome Institute (JGI) 3300024150 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 2867225 3325 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300020762 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera16 DOE Joint Genome Institute (JGI) 3300020762 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 7711863 7544 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010606 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.L15.16S negative DOE Joint Genome Institute (JGI) 3300010606 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 845504 1081 0 0 1 0 SRX2750411 Unrestricted 0.0 Single_particle_sort 3300036251 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.M8 DOE Joint Genome Institute (JGI) 3300036251 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 1456893 1487 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020642 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera32 DOE Joint Genome Institute (JGI) 3300020642 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 6051163 6298 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300010682 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.D18.Aquificae DOE Joint Genome Institute (JGI) 3300010682 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1265585 1568 1 0 2 0 SRX2751563 Unrestricted 0.0 Single_particle_sort 3300021522 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from agricultural soil in Iowa, United States - IA12soil_GW_GH6A(-) DOE Joint Genome Institute (JGI) 3300021522 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov; aaron.wright@pnnl.gov Tanja Woyke; Aaron Wright No Environmental Terrestrial Agricultural land Soil Unclassified soil 41.9167 -93.75 1894179 2400 3 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036338 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.M6 DOE Joint Genome Institute (JGI) 3300036338 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 4144085 4414 1 0 3 0 Unrestricted 0.0 Single_particle_sort 3300028688 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Michigan, Michigan, United States - MI23.DCL.Orng.C5 DOE Joint Genome Institute (JGI) 3300028688 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.1333 -87.0 14381731 32556 8 0 17 0 Unrestricted 236.7 Single_particle_sort 3300007429 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C32_LANv2 DOE Joint Genome Institute (JGI) 3300007429 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 3409003 3695 2 0 1 0 SRX2937418 Unrestricted 0.0 Single_particle_sort 3300032652 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep2 HSBNCT.T11.300.1.E11 DOE Joint Genome Institute (JGI) 3300032652 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 4347173 4618 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300047081 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from seawater in Basse-Terre, Guadeloupe - No.Template.Control.seawater_JMV.Tmarg.Fil1.2.C2 DOE Joint Genome Institute (JGI) 3300047081 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp seawater 16.2781 -61.5582 24091751 24297 5 0 8 0 Unrestricted 0.0 Single_particle_sort 3300046936 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment.pos_JMV.Tmarg.Fil1.2.K3 DOE Joint Genome Institute (JGI) 3300046936 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 15991262 15562 3 0 7 0 Unrestricted 0.0 Single_particle_sort 3300024167 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.G4 DOE Joint Genome Institute (JGI) 3300024167 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 7177331 7803 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300036248 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.L3 DOE Joint Genome Institute (JGI) 3300036248 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 3183876 3294 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010590 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.H14.16S negative DOE Joint Genome Institute (JGI) 3300010590 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 897652 982 0 0 0 0 SRX2750380 Unrestricted 0.0 Single_particle_sort 3300020960 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera15 DOE Joint Genome Institute (JGI) 3300020960 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 4596082 4589 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300046945 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.L4 DOE Joint Genome Institute (JGI) 3300046945 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 1077126 1138 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300032990 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.Aug13.5000.01.C5 DOE Joint Genome Institute (JGI) 3300032990 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 3915264 4059 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034289 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Benguela upwelling system, South Atlantic Ocean - Ca. Marithioploca JNN162YH_Rep4_CE DOE Joint Genome Institute (JGI) 3300034289 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -23.0 14.0692 8197872 8266 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020806 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera5 DOE Joint Genome Institute (JGI) 3300020806 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 13520550 13542 4 0 3 0 Unrestricted 0.0 Single_particle_sort 3300017883 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-4_D3 DOE Joint Genome Institute (JGI) 3300017883 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 6.08 4459349 4769 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300046944 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.N4 DOE Joint Genome Institute (JGI) 3300046944 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 21584812 21839 3 0 10 0 Unrestricted 0.0 Single_particle_sort 3300034260 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep2 HSBNCT.FG11.300.03.E9 DOE Joint Genome Institute (JGI) 3300034260 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 4671308 4677 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034912 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_J4 DOE Joint Genome Institute (JGI) 3300034912 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 309130 341 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010024 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater treatment plant in Klosterneuburg, Austria - C06_H0v3 DOE Joint Genome Institute (JGI) 3300010024 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Active sludge 48.3 16.2 4280596 4403 2 0 4 0 SRX2165349 Unrestricted 0.0 Single_particle_sort 3300020882 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera17 DOE Joint Genome Institute (JGI) 3300020882 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 6888646 6833 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020957 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera57 DOE Joint Genome Institute (JGI) 3300020957 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 4525749 4521 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300047247 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_HPG2_G3 DOE Joint Genome Institute (JGI) 3300047247 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 25212797 47815 18 0 28 0 Restricted 151.31 Single_particle_sort 3300032947 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep2 HSBNCT.T11.300.1.C8 DOE Joint Genome Institute (JGI) 3300032947 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 6628918 6888 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300038911 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.2.2015 0410 MDM2 LHC4sed p2 16S.E12.double-peak DOE Joint Genome Institute (JGI) 3300038911 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 639337 749 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300032549 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep3 HSBNCT.T11.300.1.N15 DOE Joint Genome Institute (JGI) 3300032549 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 5502945 5342 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300010949 *Microbiome Permanent Draft Mouse host associated microbial communities from Vienna, Austria Mouse cecal microbial communities from Vienna, Austria - N-Acetylglucosamine amended with D2O_GlcNAcE DOE Joint Genome Institute (JGI) 3300010949 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes romans@mit.edu Roman Stocker No Host-associated Mammals Large intestine Digestive system Cecum Mouse cecum 48.2 16.37 222669 275 1 0 2 0 SRX2954891 Unrestricted 0.0 Single_particle_sort 3300038939 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Sandy's Spring West, Nevada, USA - SSWsed.3.2015 0414 MDM2 SSWsed p3 16S.I22.double-peak DOE Joint Genome Institute (JGI) 3300038939 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 40.653 -119.3749 538650 624 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300020989 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera87 DOE Joint Genome Institute (JGI) 3300020989 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 7441502 7255 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034831 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells PlantN RepB EcoBCT.PlantN.5000.1.H3 DOE Joint Genome Institute (JGI) 3300034831 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 14708359 16537 5 0 6 0 Unrestricted 0.0 Single_particle_sort 3300010025 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater treatment plant in Klosterneuburg, Austria - C20_HNv3 DOE Joint Genome Institute (JGI) 3300010025 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Active sludge 48.3 16.2 5068986 5060 1 0 1 0 SRX2165355 Unrestricted 0.0 Single_particle_sort 3300020623 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera70 DOE Joint Genome Institute (JGI) 3300020623 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 9825248 9566 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300007461 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge DR20_LAN DOE Joint Genome Institute (JGI) 3300007461 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 12148458 13212 2 1 3 2 SRX2932858 Unrestricted 0.0 Single_particle_sort 3300010547 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.F13.16S negative DOE Joint Genome Institute (JGI) 3300010547 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 602182 758 0 0 0 0 SRX2750992 Unrestricted 0.0 Single_particle_sort 3300047085 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from reagents in Basse-Terre, Guadeloupe - No.Template.Control.reagent_JMV.Tmarg.Fil1.2.D1 DOE Joint Genome Institute (JGI) 3300047085 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp reagent 16.2781 -61.5582 18723140 20428 5 0 8 0 Unrestricted 0.0 Single_particle_sort 3300020737 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera7 DOE Joint Genome Institute (JGI) 3300020737 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 2618698 2374 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007382 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C87_wellG04 DOE Joint Genome Institute (JGI) 3300007382 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 666562 836 1 0 1 0 SRX3200786 Unrestricted 0.0 Single_particle_sort 3300006763 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C49_wellA04 DOE Joint Genome Institute (JGI) 3300006763 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 1336176 1589 0 0 0 0 SRX3200214 Unrestricted 0.0 Single_particle_sort 3300047084 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from reagents in Basse-Terre, Guadeloupe - No.Template.Control.reagent_JMV.Tmarg.Fil1.2.C1 DOE Joint Genome Institute (JGI) 3300047084 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp reagent 16.2781 -61.5582 19782933 21198 5 0 4 0 Unrestricted 0.0 Single_particle_sort 3300017838 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells of marine protists from Biology Centre CAS, Ceske Budejovice, Czech Republic - JAMX8_100Endo_L3 DOE Joint Genome Institute (JGI) 3300017838 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Marine Unclassified lab culture 48.9774 14.4478 3120071 3551 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300046958 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.H6 DOE Joint Genome Institute (JGI) 3300046958 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 14944488 15535 2 0 5 0 Unrestricted 0.0 Single_particle_sort 3300023433 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities from Utah, United States - BONCAT_SYTO_Terrestrial_sediment - 10 DOE Joint Genome Institute (JGI) 3300023433 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 161046999 450003 215 0 343 1 Unrestricted 17.55 Single_particle_sort 3300036255 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.N7 DOE Joint Genome Institute (JGI) 3300036255 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 2289562 2501 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034927 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_M3 DOE Joint Genome Institute (JGI) 3300034927 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 1383652 1403 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300033028 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep1 HSBNCT.N11.300.1.D4 DOE Joint Genome Institute (JGI) 3300033028 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2261731 2425 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300036254 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.N6 DOE Joint Genome Institute (JGI) 3300036254 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 3614624 3668 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300033099 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep3 HSBNCT.N11.300.1.K14 DOE Joint Genome Institute (JGI) 3300033099 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3790842 4027 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300034846 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells SoilN RepA EcoBCT.SoilN.5000.1.E3 DOE Joint Genome Institute (JGI) 3300034846 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 7264112 8080 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034273 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep2 HSBNCT.FG11.300.03.M9 DOE Joint Genome Institute (JGI) 3300034273 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 12515864 11808 4 0 2 0 Unrestricted 0.0 Single_particle_sort 3300017879 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-4_C3 DOE Joint Genome Institute (JGI) 3300017879 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 6.08 4502693 4759 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300024028 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.G8 DOE Joint Genome Institute (JGI) 3300024028 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 9157120 9885 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300007465 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C29_HAv2 DOE Joint Genome Institute (JGI) 3300007465 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 14012522 14378 4 0 7 0 SRX2937417 Unrestricted 0.0 Single_particle_sort 3300034835 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - Total cells PlantN RepB EcoBCT.PlantN.5000.1.I3 DOE Joint Genome Institute (JGI) 3300034835 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 8261857 9142 4 0 6 0 Unrestricted 0.0 Single_particle_sort 3300033132 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep2 HSBNCT.N11.300.1.L9 DOE Joint Genome Institute (JGI) 3300033132 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3339355 3448 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034433 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.K3 DOE Joint Genome Institute (JGI) 3300034433 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 2148415 2276 1 0 1 0 SRX8389159 Unrestricted 0.0 Single_particle_sort 3300023392 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities from Utah, United States - BONCAT_SYTO_Terrestrial_sediment - 9 DOE Joint Genome Institute (JGI) 3300023392 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 158410625 443513 201 0 332 0 Unrestricted 29.02 Single_particle_sort 3300007464 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D68_LAv2 DOE Joint Genome Institute (JGI) 3300007464 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 14828890 14142 6 0 4 0 SRX2939914 Unrestricted 0.0 Single_particle_sort 3300034834 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells PlantN RepB EcoBCT.PlantN.5000.1.H6 DOE Joint Genome Institute (JGI) 3300034834 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 10932578 11476 6 0 8 0 Unrestricted 0.0 Single_particle_sort 3300033001 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep1 HSBNCT.FGM.300.1.L4 DOE Joint Genome Institute (JGI) 3300033001 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 11110944 9477 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010469 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.E21.16S negative DOE Joint Genome Institute (JGI) 3300010469 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 257829 302 0 0 0 0 SRX2750465 Unrestricted 0.0 Single_particle_sort 3300007696 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C74_wellE05 DOE Joint Genome Institute (JGI) 3300007696 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 27603 32 0 0 0 0 SRX3202110 Unrestricted 0.0 Single_particle_sort 3300047213 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_HPG2_G3 DOE Joint Genome Institute (JGI) 3300047213 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 37830558 75922 38 0 55 0 Restricted 49.91 Single_particle_sort 3300020973 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera49 DOE Joint Genome Institute (JGI) 3300020973 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 6517408 6289 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010480 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.N11.16S negative DOE Joint Genome Institute (JGI) 3300010480 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 282810 365 0 0 1 0 SRX2749292 Unrestricted 0.0 Single_particle_sort 3300010513 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.L18.Crenarchaeota DOE Joint Genome Institute (JGI) 3300010513 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 462227 574 0 0 0 0 SRX2751564 Unrestricted 0.0 Single_particle_sort 3300046941 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.M4 DOE Joint Genome Institute (JGI) 3300046941 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 199867 212 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036706 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep3 HSBNCT.FG11.5000.02.K3 DOE Joint Genome Institute (JGI) 3300036706 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 9811154 9371 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300038867 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - PDU D8.10.2014 1013 MDM2 PDU D8 p10 16S.E22.double-seq DOE Joint Genome Institute (JGI) 3300038867 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 1048386 1150 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036294 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.1.C7 DOE Joint Genome Institute (JGI) 3300036294 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 17736413 18343 3 0 5 0 Unrestricted 0.0 Single_particle_sort 3300010671 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.C17.16S negative DOE Joint Genome Institute (JGI) 3300010671 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1151943 1437 0 0 0 0 SRX2749508 Unrestricted 0.0 Single_particle_sort 3300036197 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Santa Monica Basin, California, United States - ANME aggregate JGI_Orphan.7059.BNCT.2.M7 DOE Joint Genome Institute (JGI) 3300036197 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.7988 -118.6476 390429 416 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300032878 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.Aug20.5000.01 .D4 DOE Joint Genome Institute (JGI) 3300032878 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 52495891 51013 17 0 26 0 Unrestricted 0.0 Single_particle_sort 3300031430 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.Vis6.UnFx.1-dapi+.3 DOE Joint Genome Institute (JGI) 3300031430 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 9261212 9511 10 0 12 0 Unrestricted 0.0 Single_particle_sort 3300021034 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera89 DOE Joint Genome Institute (JGI) 3300021034 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 12769431 12585 4 0 7 0 Unrestricted 0.0 Single_particle_sort 3300007374 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C68_wellD05 DOE Joint Genome Institute (JGI) 3300007374 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 402914 524 0 0 1 0 SRX3200279 Unrestricted 0.0 Single_particle_sort 3300031270 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.Vis6.UnFx.1-neg.2 DOE Joint Genome Institute (JGI) 3300031270 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 12734725 13284 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300024113 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.J11 DOE Joint Genome Institute (JGI) 3300024113 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 4026387 4749 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300036295 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.1.D3 DOE Joint Genome Institute (JGI) 3300036295 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 4796185 5065 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020637 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera36 DOE Joint Genome Institute (JGI) 3300020637 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 5252754 5446 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300033087 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep2 HSBNCT.N11.300.1.L8 DOE Joint Genome Institute (JGI) 3300033087 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2758450 2832 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300021035 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera46 DOE Joint Genome Institute (JGI) 3300021035 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 12171436 12352 1 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034693 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells T11 rep1 HSBNCT.T11.5000.01.F4 DOE Joint Genome Institute (JGI) 3300034693 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3919 11437776 10460 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300007375 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C91_wellH06 DOE Joint Genome Institute (JGI) 3300007375 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 429482 559 0 0 0 0 SRX3201125 Unrestricted 0.0 Single_particle_sort 3300009202 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsF12-p3 DOE Joint Genome Institute (JGI) 3300009202 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 122280 171 0 0 0 0 SRX3205390 Unrestricted 0.0 Single_particle_sort 3300007436 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C09_HNv2 DOE Joint Genome Institute (JGI) 3300007436 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 5451991 5456 2 0 2 0 SRX2939062 Unrestricted 0.0 Single_particle_sort 3300034866 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - Total cells SoilN RepC EcoBCT.SoilN.5000.1.L5 DOE Joint Genome Institute (JGI) 3300034866 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 10614042 11511 3 0 5 0 Unrestricted 0.0 Single_particle_sort 3300009286 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsG04-p2 DOE Joint Genome Institute (JGI) 3300009286 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 5407276 6412 2 0 2 0 SRX3205291 Unrestricted 0.0 Single_particle_sort 3300047129 *Microbiome Permanent Draft Freshwater fungal communities from various locations Enriched cells from freshwater from Ford Lake, Michigan, United States - PSC037 Chytrid MDA DOE Joint Genome Institute (JGI) 3300047129 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes tyjames@umich.edu Timothy Y. James No Environmental Aquatic Lake Freshwater Unclassified Freshwater 42.230183 -83.601263 38445109 46181 8 2 12 4 Restricted 0.0 Single_particle_sort 3300009062 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsB06UF DOE Joint Genome Institute (JGI) 3300009062 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes hatzenpichler@caltech.edu, roland.hatzenpichler@montana.edu; vorphan@gps.caltech.edu Hatzenpichler, Roland Hatzenpichler; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 3182512 3557 1 0 1 0 SRX3204470 Unrestricted 0.0 Single_particle_sort 3300032525 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep1 HSBNCT.T11.300.1.C3 DOE Joint Genome Institute (JGI) 3300032525 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 11115664 9766 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300007683 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C08_wellB02 DOE Joint Genome Institute (JGI) 3300007683 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 2606 4 0 0 0 0 SRX3201146 Unrestricted 0.0 Single_particle_sort 3300036140 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_G7 DOE Joint Genome Institute (JGI) 3300036140 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 50779 60 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300007998 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - D03_HANv2 DOE Joint Genome Institute (JGI) 3300007998 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Unclassified Activated sludge Unclassified Activated Sludge 48.3 16.2 58842740 60077 26 0 32 0 SRX2338762 Unrestricted 0.0 Single_particle_sort 3300014377 *Microbiome Permanent Draft Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India Lab enriched petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India - point GR3 NA 51 Life Technologies 3300014377 Metagenome - Cell Enrichment MetaVelvet v1.2.01 released by JGI data releasing policy No Yes sarkar.jayeeta12@gmail.com Jayeeta Sarkar No Engineered Bioremediation Unclassified Hydrocarbon Unclassified petroleum sludge 26.18471 91.80725 199668082 829475 550 5 955 25 SRX2512230 0.0 Single_particle_sort 3300020871 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera60 DOE Joint Genome Institute (JGI) 3300020871 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 6252107 6181 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300010532 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.M9.16S negative DOE Joint Genome Institute (JGI) 3300010532 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 544404 707 0 0 0 0 SRX2750271 Unrestricted 0.0 Single_particle_sort 3300032839 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.Aug07.5000.01.C7 DOE Joint Genome Institute (JGI) 3300032839 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 4620385 4813 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010618 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.K17.16S negative DOE Joint Genome Institute (JGI) 3300010618 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 890557 1124 0 0 0 0 SRX2751562 Unrestricted 0.0 Single_particle_sort 3300038926 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.2.2015 0410 MDM2 LHC4sed p2 16S.I15.double-seq DOE Joint Genome Institute (JGI) 3300038926 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 511796 615 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300049406 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.I9 DOE Joint Genome Institute (JGI) 3300049406 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 23061251 26970 8 0 9 0 Unrestricted 0.0 Single_particle_sort 3300034541 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.I3 DOE Joint Genome Institute (JGI) 3300034541 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1288624 1409 1 0 1 0 SRX8392458 Unrestricted 0.0 Single_particle_sort 3300036682 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells T11 rep3 HSBNCT.T11.5000.01.L3 DOE Joint Genome Institute (JGI) 3300036682 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3919 10459460 9585 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300046961 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.F6 DOE Joint Genome Institute (JGI) 3300046961 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 24439023 25125 5 0 10 0 Unrestricted 0.0 Single_particle_sort 3300047232 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_AV3_D3 DOE Joint Genome Institute (JGI) 3300047232 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 22444026 37947 19 1 22 0 Restricted 117.24 Single_particle_sort 3300029808 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Superior, Ontario, Canada - control SU02.SRF (v2) (version 2) DOE Joint Genome Institute (JGI) 3300029808 Metagenome - Cell Enrichment SPAdes v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Engineered Industrial production Sheath fluid Chemical products Unclassified sheath fluid 37.9313 -122.0217 410989 606 1 0 0 0 Unrestricted 27.75 Single_particle_sort 3300038890 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.1.2015 0410 MDM2 LHC4 sed p1 16S.G22.double-peak DOE Joint Genome Institute (JGI) 3300038890 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 468330 602 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300007445 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D09_HANv2 DOE Joint Genome Institute (JGI) 3300007445 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 7864293 8568 5 0 7 0 SRX2938345 Unrestricted 0.0 Single_particle_sort 3300034303 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Bay of Concepcion, South Pacific Ocean - Ca. Marithioploca JBCH1603A3_Rep4_CE DOE Joint Genome Institute (JGI) 3300034303 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -36.51 -73.125 166907 175 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300009253 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Santa Monica Basin, CA to study methane oxidation - BONCAT_CE_7061-ConsH03 DOE Joint Genome Institute (JGI) 3300009253 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes hatzenpichler@caltech.edu, roland.hatzenpichler@montana.edu; vorphan@gps.caltech.edu Hatzenpichler, Roland Hatzenpichler; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 33.789 -119.2284 1505916 1839 0 0 0 0 SRX3204833 Unrestricted 0.0 Single_particle_sort 3300010449 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.K21.16S negative DOE Joint Genome Institute (JGI) 3300010449 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 91395 115 0 0 0 0 SRX2749666 Unrestricted 0.0 Single_particle_sort 3300007444 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C14_HNv2 DOE Joint Genome Institute (JGI) 3300007444 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 8712030 8307 3 0 4 0 SRX2939061 Unrestricted 0.0 Single_particle_sort 3300020662 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera62 DOE Joint Genome Institute (JGI) 3300020662 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 10296303 9966 4 0 6 0 Unrestricted 0.0 Single_particle_sort 3300007458 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D91_LN DOE Joint Genome Institute (JGI) 3300007458 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 12366113 12401 9 0 9 0 SRX2932861 Unrestricted 0.0 Single_particle_sort 3300010706 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.B10.16S negative DOE Joint Genome Institute (JGI) 3300010706 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 2370366 2204 0 0 1 0 SRX2748934 Unrestricted 0.0 Single_particle_sort 3300036408 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_E14 DOE Joint Genome Institute (JGI) 3300036408 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 20856 27 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300023195 *Microbiome Permanent Draft Enriched microbial communities from petrochemical wastewater in Fort McMurray, Alberta, Canada Enriched microbial communities from petrochemical wastewater in Fort McMurray, Alberta, Canada - HHC_17 University of Calgary 3300023195 Metagenome - Cell Enrichment SPAdes v. 3.9.1 released by JGI data releasing policy Yes Yes dunfield.bio@gmail.com Dunfield Laboratory No Engineered Wastewater Petrochemical Industrial wastewater Unclassified Wastewater 57.01116 -111.6 111677432 194566 78 3 109 4 0.0 Single_particle_sort 3300024147 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.I8 DOE Joint Genome Institute (JGI) 3300024147 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 2471126 2895 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300021186 *Microbiome Permanent Draft Investigating the Microbiome of Thiomargarita & Thiopilula Thiomargarita spp. associated microbial communities from marine sediment, the Benguela Current, Namibia - TFISH University of Minnesota - Twin Cities 3300021186 Metagenome - Cell Enrichment Spades 3.10 released by JGI data releasing policy No Yes beverlyflood@mac.com Beverly Flood No Host-associated Microbial Unclassified Bacteria Unclassified marine sediment -23.0025 14.09916667 301466778 630401 54 0 98 0 0.0 Single_particle_sort 3300021019 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera25 DOE Joint Genome Institute (JGI) 3300021019 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 10592305 10470 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300007679 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C63_wellC06 DOE Joint Genome Institute (JGI) 3300007679 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 18442 30 0 0 0 0 SRX3201638 Unrestricted 0.0 Single_particle_sort 3300010674 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.L13.16S negative DOE Joint Genome Institute (JGI) 3300010674 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1476359 1456 1 0 0 0 SRX2750342 Unrestricted 0.0 Single_particle_sort 3300007371 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C69_wellD06 DOE Joint Genome Institute (JGI) 3300007371 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 380209 496 0 0 0 0 SRX3200312 Unrestricted 0.0 Single_particle_sort 3300021031 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera81 DOE Joint Genome Institute (JGI) 3300021031 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 11468093 11601 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300034330 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep3 HSBNCT.FG11.5000.02.K4 DOE Joint Genome Institute (JGI) 3300034330 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 6511431 6226 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300010675 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.F17.16S negative DOE Joint Genome Institute (JGI) 3300010675 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1470434 1474 0 0 1 0 SRX2750424 Unrestricted 0.0 Single_particle_sort 3300034427 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.N3 DOE Joint Genome Institute (JGI) 3300034427 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 2486411 2558 1 0 1 0 SRX8389153 Unrestricted 0.0 Single_particle_sort 3300005129 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME D07B27 DOE Joint Genome Institute (JGI) 3300005129 Metagenome - Cell Enrichment spades v. 3.0.0 Nikos: made them private temporary due to Tanja;s request for quality control check No Yes wagner@microbial-ecology.net Michael Wagner Yes 28386012.0 Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 41750275 41577 9 0 13 0 SRX2482146 Unrestricted 0.0 Single_particle_sort 3300017896 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-7_K3 DOE Joint Genome Institute (JGI) 3300017896 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 26709244 27983 11 0 12 0 Unrestricted 0.0 Single_particle_sort 3300028700 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Michigan, Michigan, United States - MI23.SRFL.Total.B7 DOE Joint Genome Institute (JGI) 3300028700 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.1333 -87.0 68186964 143014 26 0 33 0 Unrestricted 128.98 Single_particle_sort 3300020742 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera10 DOE Joint Genome Institute (JGI) 3300020742 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 4412912 4567 0 0 2 0 Unrestricted 0.0 Single_particle_sort 3300036209 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Santa Monica Basin, California, United States - ANME aggregate JGI_Orphan.7059.BNCT.2.N8 DOE Joint Genome Institute (JGI) 3300036209 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.7988 -118.6476 579901 592 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034240 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep2 HSBNCT.FG11.300.03.H8 DOE Joint Genome Institute (JGI) 3300034240 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 3646789 3255 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300014353 *Microbiome Finished Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India Lab enriched petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India - point GR3 UA 91 Life Technologies 3300014353 Metagenome - Cell Enrichment MetaVelvet v1.2.01 released by JGI data releasing policy No Yes sarkar.jayeeta12@gmail.com Jayeeta Sarkar No Engineered Bioremediation Unclassified Hydrocarbon Unclassified petroleum sludge 26.18471 91.80725 131920773 391073 324 0 546 1 SRX2512231 0.0 Single_particle_sort 3300047267 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_AV3_F3 DOE Joint Genome Institute (JGI) 3300047267 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 20824581 38124 11 0 33 0 Restricted 147.34 Single_particle_sort 3300021153 *Microbiome Permanent Draft Investigating the Microbiome of Thiomargarita & Thiopilula Thiomargarita spp. associated microbial communities from marine sediment, the Benguela Current, Namibia - ENDO003 University of Minnesota - Twin Cities 3300021153 Metagenome - Cell Enrichment Spades 3.10 released per PI No Yes beverlyflood@mac.com Beverly Flood No Host-associated Microbial Unclassified Bacteria Unclassified marine sediment -23.0025 14.09916667 222832918 521056 40 2 81 1 0.0 Single_particle_sort 3300032703 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep3 HSBNCT.T11.300.1.G13 DOE Joint Genome Institute (JGI) 3300032703 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 2870685 2954 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300049398 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.E7 DOE Joint Genome Institute (JGI) 3300049398 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 26765556 28936 12 0 13 0 Unrestricted 0.0 Single_particle_sort 3300032967 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep1 HSBNCT.FGM.300.1.E4 DOE Joint Genome Institute (JGI) 3300032967 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 4575073 4297 3 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020997 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera39 DOE Joint Genome Institute (JGI) 3300020997 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 7103332 7555 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010567 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.I14.16S negative DOE Joint Genome Institute (JGI) 3300010567 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 703660 859 0 0 0 0 SRX2749421 Unrestricted 0.0 Single_particle_sort 3300034933 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_F4 DOE Joint Genome Institute (JGI) 3300034933 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 21279 29 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300007441 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D74_LANv2 DOE Joint Genome Institute (JGI) 3300007441 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 6695300 7167 1 0 3 0 SRX2938558 Unrestricted 0.0 Single_particle_sort 3300036268 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_H12 DOE Joint Genome Institute (JGI) 3300036268 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 37641 45 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300032815 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep2 HSBNCT.FGM.300.1.L9 DOE Joint Genome Institute (JGI) 3300032815 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 18640186 15772 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020874 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera26 DOE Joint Genome Institute (JGI) 3300020874 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5921545 6266 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300046965 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.B7 DOE Joint Genome Institute (JGI) 3300046965 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 868292 987 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300047250 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_HPG3_F3 DOE Joint Genome Institute (JGI) 3300047250 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 41196461 90253 24 0 31 0 Restricted 120.26 Single_particle_sort 3300020940 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera48 DOE Joint Genome Institute (JGI) 3300020940 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 11469169 11799 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300032950 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep2 HSBNCT.T11.300.1.M9 DOE Joint Genome Institute (JGI) 3300032950 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 9772990 8652 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300008053 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D88_L00N DOE Joint Genome Institute (JGI) 3300008053 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 69135 66 0 0 0 0 SRX2156184 Unrestricted 0.0 Single_particle_sort 3300046964 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.J7 DOE Joint Genome Institute (JGI) 3300046964 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 13507684 13302 3 0 6 0 Unrestricted 0.0 Single_particle_sort 3300034297 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Bay of Concepcion, South Pacific Ocean - Ca. Thiopilula JBCH1603A1_Rep3_CE DOE Joint Genome Institute (JGI) 3300034297 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -36.51 -73.125 4367089 4598 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300032814 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep3 HSBNCT.FGM.300.1.E14 DOE Joint Genome Institute (JGI) 3300032814 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 7854393 7258 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300020875 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera36 DOE Joint Genome Institute (JGI) 3300020875 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 6389900 6328 4 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010550 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.D5.16S negative DOE Joint Genome Institute (JGI) 3300010550 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 628122 771 0 0 0 0 SRX2750486 Unrestricted 0.0 Single_particle_sort 3300038908 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.2.2015 0410 MDM2 LHC4sed p2 16S.F13.double-peak DOE Joint Genome Institute (JGI) 3300038908 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 806870 1017 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010705 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.F10.16S negative DOE Joint Genome Institute (JGI) 3300010705 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 2327076 2195 1 0 1 0 SRX2750804 Unrestricted 0.0 Single_particle_sort 3300020930 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera92 DOE Joint Genome Institute (JGI) 3300020930 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 10333447 10115 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300033137 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep1 HSBNCT.N11.300.1.D3 DOE Joint Genome Institute (JGI) 3300033137 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 1706844 1876 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010704 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.J15.16S negative DOE Joint Genome Institute (JGI) 3300010704 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 2187437 2091 0 0 0 0 SRX2750401 Unrestricted 0.0 Single_particle_sort 3300007709 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C39_wellG03 DOE Joint Genome Institute (JGI) 3300007709 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 72807 104 0 0 0 0 SRX3202757 Unrestricted 0.0 Single_particle_sort 3300007431 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D86_LNv2 DOE Joint Genome Institute (JGI) 3300007431 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 4727023 4555 3 0 2 0 SRX2944609 Unrestricted 0.0 Single_particle_sort 3300034861 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells SoilN RepC EcoBCT.SoilN.5000.1.K4 DOE Joint Genome Institute (JGI) 3300034861 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 14072162 15215 6 0 8 0 Unrestricted 0.0 Single_particle_sort 3300017894 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-7_J3 DOE Joint Genome Institute (JGI) 3300017894 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 23542537 24044 15 0 15 0 Unrestricted 0.0 Single_particle_sort 3300003685 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis roots microbial communities from Chapel Hill, North Carolina, USA - Col Cl nosort DOE Joint Genome Institute (JGI) 3300003685 Metagenome - Cell Enrichment SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Unclassified Roots Unclassified Arabidopsis roots 35.9077 -79.0508 107381816 182627 5 7 2 13 Unrestricted 0.0 Single_particle_sort 3300007419 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D94_LAv2 DOE Joint Genome Institute (JGI) 3300007419 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 2572527 2824 1 0 1 0 SRX2938627 Unrestricted 0.0 Single_particle_sort 3300017895 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-3_J3 DOE Joint Genome Institute (JGI) 3300017895 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 7412704 8019 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300034230 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep1 HSBNCT.FG11.300.03.M4 DOE Joint Genome Institute (JGI) 3300034230 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 2479720 2601 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010676 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.G12.16S negative DOE Joint Genome Institute (JGI) 3300010676 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1444567 1475 0 0 0 0 SRX2750912 Unrestricted 0.0 Single_particle_sort 3300036699 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells N11 rep3 HSBNCT.N11.5000.01.L6 DOE Joint Genome Institute (JGI) 3300036699 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3921 4604896 5142 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300039311 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - BONCATsort_Cellobiose_rep_1_46748events_18pcr DOE Joint Genome Institute (JGI) 3300039311 Metagenome - Cell Enrichment metaspades v. 3.13.0 Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5326 -110.7972 13298925 32322 31 0 33 0 Unrestricted 87.01 Single_particle_sort 3300007387 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C45_wellH03 DOE Joint Genome Institute (JGI) 3300007387 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 1929286 2370 1 0 1 0 SRX3201128 Unrestricted 0.0 Single_particle_sort 3300037388 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - BONCATsort_N2_100%_rep_1_68000events_18pcr DOE Joint Genome Institute (JGI) 3300037388 Metagenome - Cell Enrichment metaspades v. 3.13.0 Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5326 -110.7972 18123429 43005 25 0 51 0 Unrestricted 303.47 Single_particle_sort 3300036309 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.1.N3 DOE Joint Genome Institute (JGI) 3300036309 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 1397929 1434 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300021041 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera85 DOE Joint Genome Institute (JGI) 3300021041 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 12646251 12991 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300049401 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.F7 DOE Joint Genome Institute (JGI) 3300049401 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 12744702 14429 7 0 9 0 Unrestricted 0.0 Single_particle_sort 3300009220 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsD05-p3 DOE Joint Genome Institute (JGI) 3300009220 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 389396 532 0 0 0 0 SRX3205389 Unrestricted 0.0 Single_particle_sort 3300032816 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep2 HSBNCT.FGM.300.1.D11 DOE Joint Genome Institute (JGI) 3300032816 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 6863957 6570 1 0 3 0 Unrestricted 0.0 Single_particle_sort 3300024137 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.C5 DOE Joint Genome Institute (JGI) 3300024137 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 1201557 1313 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300046966 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.M7 DOE Joint Genome Institute (JGI) 3300046966 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 14391162 14481 1 0 4 0 Unrestricted 0.0 Single_particle_sort 3300038921 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.2.2015 0410 MDM2 LHC4sed p2 16S.F21.double-peak DOE Joint Genome Institute (JGI) 3300038921 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 364183 485 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034829 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - Total cells PlantN RepA EcoBCT.PlantN.5000.1.F5 DOE Joint Genome Institute (JGI) 3300034829 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 9645035 10506 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020876 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera54 DOE Joint Genome Institute (JGI) 3300020876 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 6037549 6327 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300034922 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_H3 DOE Joint Genome Institute (JGI) 3300034922 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 1838581 1866 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034864 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - Total cells SoilN RepC EcoBCT.SoilN.5000.1.L3 DOE Joint Genome Institute (JGI) 3300034864 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 13402005 14239 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300017891 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-3_L3 DOE Joint Genome Institute (JGI) 3300017891 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 5830599 6520 4 0 2 0 Unrestricted 0.0 Single_particle_sort 3300007434 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D31_HAN DOE Joint Genome Institute (JGI) 3300007434 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 5156462 4951 1 0 1 0 SRX2932864 Unrestricted 0.0 Single_particle_sort 3300010439 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.C8.16S negative DOE Joint Genome Institute (JGI) 3300010439 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 36593 56 0 0 0 0 SRX2748779 Unrestricted 0.0 Single_particle_sort 3300034252 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep3 HSBNCT.FG11.300.03.F13 DOE Joint Genome Institute (JGI) 3300034252 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 4224224 3873 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007376 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C21_wellD01 DOE Joint Genome Institute (JGI) 3300007376 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 495484 640 1 0 0 0 SRX3200258 Unrestricted 0.0 Single_particle_sort 3300021036 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera87 DOE Joint Genome Institute (JGI) 3300021036 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 13383841 13126 3 0 5 0 Unrestricted 0.0 Single_particle_sort 3300034865 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - Total cells SoilN RepC EcoBCT.SoilN.5000.1.L4 DOE Joint Genome Institute (JGI) 3300034865 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 19048502 20063 7 0 11 0 Unrestricted 0.0 Single_particle_sort 3300007435 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D11_HNMv2 DOE Joint Genome Institute (JGI) 3300007435 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 5232121 5320 2 0 3 0 SRX2938324 Unrestricted 0.0 Single_particle_sort 3300036296 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.1.D4 DOE Joint Genome Institute (JGI) 3300036296 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 6115989 6477 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300047242 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_HPG2_C3 DOE Joint Genome Institute (JGI) 3300047242 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 24637786 48411 16 0 35 0 Restricted 129.96 Single_particle_sort 3300020952 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera88 DOE Joint Genome Institute (JGI) 3300020952 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 2335320 2271 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300032526 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep1 HSBNCT.T11.300.1.E4 DOE Joint Genome Institute (JGI) 3300032526 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 3342549 3580 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020887 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera31 DOE Joint Genome Institute (JGI) 3300020887 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 6622615 7150 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300041879 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Cand. Thiomargarita magnifica 71 DOE Joint Genome Institute (JGI) 3300041879 Metagenome - Cell Enrichment spades v. 3.14.1 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 12800214 12363 2 0 6 0 Unrestricted 0.0 Single_particle_sort 3300034917 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_C3 DOE Joint Genome Institute (JGI) 3300034917 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 2523731 2491 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032849 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep2 HSBNCT.FGM.300.1.C9 DOE Joint Genome Institute (JGI) 3300032849 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 4803805 4511 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300033018 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep3 HSBNCT.N11.300.1.C14 DOE Joint Genome Institute (JGI) 3300033018 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2821891 2951 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020859 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera6 DOE Joint Genome Institute (JGI) 3300020859 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5146873 5569 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010542 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.L20.16S negative DOE Joint Genome Institute (JGI) 3300010542 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 660718 733 0 0 0 0 SRX2750458 Unrestricted 0.0 Single_particle_sort 3300010701 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.H14.16S negative DOE Joint Genome Institute (JGI) 3300010701 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 2027395 1977 0 0 0 0 SRX3352023 Unrestricted 0.0 Single_particle_sort 3300009284 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsE10-p2 DOE Joint Genome Institute (JGI) 3300009284 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 5169456 5722 0 0 1 0 SRX3205145 Unrestricted 0.0 Single_particle_sort 3300032942 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep2 HSBNCT.T11.300.1.N10 DOE Joint Genome Institute (JGI) 3300032942 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 13441574 11094 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300017868 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-3_N3 DOE Joint Genome Institute (JGI) 3300017868 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 3090391 3604 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300049404 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.G9 DOE Joint Genome Institute (JGI) 3300049404 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 21707832 22805 6 0 12 0 Unrestricted 0.0 Single_particle_sort 3300036130 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_G5 DOE Joint Genome Institute (JGI) 3300036130 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 35897 50 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300038924 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.2.2015 0410 MDM2 LHC4sed p2 16S.B15.double-seq DOE Joint Genome Institute (JGI) 3300038924 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 743438 905 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300020903 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera83 DOE Joint Genome Institute (JGI) 3300020903 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7706925 7754 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300049405 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.J9 DOE Joint Genome Institute (JGI) 3300049405 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 20392124 23903 9 0 11 0 Unrestricted 0.0 Single_particle_sort 3300024018 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.F13 DOE Joint Genome Institute (JGI) 3300024018 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 5304141 6032 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020767 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera16 DOE Joint Genome Institute (JGI) 3300020767 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7418606 8011 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300038925 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.2.2015 0410 MDM2 LHC4sed p2 16S.N7.double-peak DOE Joint Genome Institute (JGI) 3300038925 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 1299096 1387 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010478 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.C21.16S negative DOE Joint Genome Institute (JGI) 3300010478 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 269804 359 0 0 0 0 SRX2751763 Unrestricted 0.0 Single_particle_sort 3300007446 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D66_LNv2 DOE Joint Genome Institute (JGI) 3300007446 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 9125115 9017 5 0 5 0 SRX2938486 Unrestricted 0.0 Single_particle_sort 3300017809 *Microbiome Permanent Draft Marine microbial communities from the Costa Rica Dome and surrounding waters Marine microbial communities from the Costa Rica Dome - UW179B-red mini metaG DOE Joint Genome Institute (JGI) 3300017809 Metagenome - Cell Enrichment MEGAHIT v. 1.0.6 Yes Yes msaito@whoi.edu Mak Saito No Environmental Aquatic Oceanic Marine Photic zone Seawater 0.8736 -97.0511 56387449 71915 64 0 115 0 SRX3376051 Unrestricted 224.99 Single_particle_sort 3300034203 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep1 HSBNCT.FG11.300.03.E3 DOE Joint Genome Institute (JGI) 3300034203 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 2457711 2734 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300021527 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from agricultural soil in Iowa, United States - IA12soil_GW_GH6A(bulk) DOE Joint Genome Institute (JGI) 3300021527 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes aaron.wright@pnnl.gov; twoyke@lbl.gov Aaron Wright; Tanja Woyke No Environmental Terrestrial Unclassified Soil Agricultural land soil 41.9167 -93.75 4037799 4776 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032923 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep2 HSBNCT.FGM.300.1.F9 DOE Joint Genome Institute (JGI) 3300032923 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 5855602 5649 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020647 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera12 DOE Joint Genome Institute (JGI) 3300020647 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 6992074 7041 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300010687 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.M6.16S negative DOE Joint Genome Institute (JGI) 3300010687 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1662156 1673 0 0 0 0 SRX2748716 Unrestricted 0.0 Single_particle_sort 3300010523 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.H17.16S negative DOE Joint Genome Institute (JGI) 3300010523 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 476915 657 0 0 0 0 SRX2750429 Unrestricted 0.0 Single_particle_sort 3300020750 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera83 DOE Joint Genome Institute (JGI) 3300020750 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5960536 5990 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300021044 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera80 DOE Joint Genome Institute (JGI) 3300021044 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 14084672 13679 4 0 3 0 Unrestricted 0.0 Single_particle_sort 3300024162 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.D9 DOE Joint Genome Institute (JGI) 3300024162 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 6625901 7154 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300031440 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.Vis6.UnFx.1-fish+.5 DOE Joint Genome Institute (JGI) 3300031440 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 4073074 4500 5 0 4 0 Unrestricted 0.0 Single_particle_sort 3300047223 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_AV1_C3 DOE Joint Genome Institute (JGI) 3300047223 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 26893676 59585 5 0 47 0 Restricted 67.72 Single_particle_sort 3300033071 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep3 HSBNCT.N11.300.1.K13 DOE Joint Genome Institute (JGI) 3300033071 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2935873 3044 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010659 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.G8.16S negative DOE Joint Genome Institute (JGI) 3300010659 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1218021 1357 0 0 0 0 SRX2750707 Unrestricted 0.0 Single_particle_sort 3300038920 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.2.2015 0410 MDM2 LHC4sed p2 16S.J18.double-peak DOE Joint Genome Institute (JGI) 3300038920 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 776485 924 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300036237 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_D10 DOE Joint Genome Institute (JGI) 3300036237 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 46495 65 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300036134 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_E6 DOE Joint Genome Institute (JGI) 3300036134 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 20170 27 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300049400 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.C7 DOE Joint Genome Institute (JGI) 3300049400 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 11036582 11737 9 0 9 0 Unrestricted 0.0 Single_particle_sort 3300034769 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Bay of Concepcion, South Pacific Ocean - Ca. Thiomargarita JBCH1603RB5_Rep3_CE DOE Joint Genome Institute (JGI) 3300034769 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -36.51 -73.125 4452693 5469 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034503 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.SSM.Mag.03.M7 DOE Joint Genome Institute (JGI) 3300034503 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 7543456 5112 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036135 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_F6 DOE Joint Genome Institute (JGI) 3300036135 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 581380 641 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300047238 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_HPG1_B3 DOE Joint Genome Institute (JGI) 3300047238 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 25518937 47623 24 0 36 0 Restricted 104.55 Single_particle_sort 3300036688 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells N11 rep1 HSBNCT.N11.5000.01.E5 DOE Joint Genome Institute (JGI) 3300036688 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3921 3946162 4136 3 0 5 0 Unrestricted 0.0 Single_particle_sort 3300020755 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera65 DOE Joint Genome Institute (JGI) 3300020755 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 6322772 6416 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300008024 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge DR11_LA DOE Joint Genome Institute (JGI) 3300008024 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 13834730 13398 5 0 5 0 SRX2156182 Unrestricted 0.0 Single_particle_sort 3300010612 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.D6.16S negative DOE Joint Genome Institute (JGI) 3300010612 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 884428 1097 0 0 0 0 SRX2750487 Unrestricted 0.0 Single_particle_sort 3300038896 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.1.2015 0410 MDM2 LHC4 sed p1 16S.J14.double-peak DOE Joint Genome Institute (JGI) 3300038896 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 2645094 2744 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010538 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.C4.GAL08 DOE Joint Genome Institute (JGI) 3300010538 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 701717 718 1 0 1 0 SRX2750472 Unrestricted 0.0 Single_particle_sort 3300008025 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C31_H0 DOE Joint Genome Institute (JGI) 3300008025 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 7207780 7232 1 0 1 0 SRX2156189 Unrestricted 0.0 Single_particle_sort 3300021040 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera27 DOE Joint Genome Institute (JGI) 3300021040 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 14770646 14577 3 0 7 0 Unrestricted 0.0 Single_particle_sort 3300020754 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera74 DOE Joint Genome Institute (JGI) 3300020754 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5989232 6355 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300032938 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep2 HSBNCT.FGM.300.1.N10 DOE Joint Genome Institute (JGI) 3300032938 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 12105543 9967 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300024063 *Microbiome Permanent Draft Water metavirome from crystallizer in the solar salterns in Santa Pola Enriched hypersaline water viral community from crystallizer pond CR30 in salterns,Santa Pola, Alicante, Spain - clone 2F62 Genome Express 3300024063 Metagenome - Cell Enrichment Velvet v. 3.3 released by JGI data releasing policy No Yes emnabouhajja@gmail.com Emna Bouhajja No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified Hypersaline water 38.1922 -0.5918 948 3 0 0 0 0 0.0 Single_particle_sort 3300031374 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.Vis6.UnFx.1-dapi+.5 DOE Joint Genome Institute (JGI) 3300031374 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 12359135 12966 8 0 13 0 Unrestricted 0.0 Single_particle_sort 3300034860 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells SoilN RepC EcoBCT.SoilN.5000.1.K3 DOE Joint Genome Institute (JGI) 3300034860 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 23532706 25200 5 0 9 0 Unrestricted 0.0 Single_particle_sort 3300007430 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C03_HNv2 DOE Joint Genome Institute (JGI) 3300007430 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 3848332 3993 1 0 2 0 SRX2935643 Unrestricted 0.0 Single_particle_sort 3300010493 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.C10.16S negative DOE Joint Genome Institute (JGI) 3300010493 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 359958 444 1 0 1 0 SRX2749274 Unrestricted 0.0 Single_particle_sort 3300034231 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep2 HSBNCT.FG11.300.03.M10 DOE Joint Genome Institute (JGI) 3300034231 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 10413065 9765 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034906 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_I3 DOE Joint Genome Institute (JGI) 3300034906 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 1763049 1678 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034219 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep3 HSBNCT.FG11.300.03.J13 DOE Joint Genome Institute (JGI) 3300034219 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 5230951 5187 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300031375 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.Vis6.UnFx.1-dapi+.4 DOE Joint Genome Institute (JGI) 3300031375 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 9389551 9542 2 0 10 0 Unrestricted 0.0 Single_particle_sort 3300047078 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.F8 DOE Joint Genome Institute (JGI) 3300047078 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 18128813 18276 3 0 8 0 Unrestricted 0.0 Single_particle_sort 3300032979 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep3 HSBNCT.T11.300.1.L15 DOE Joint Genome Institute (JGI) 3300032979 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 9854876 8424 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010579 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.G20.16S negative DOE Joint Genome Institute (JGI) 3300010579 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 801402 926 0 0 0 0 SRX2749603 Unrestricted 0.0 Single_particle_sort 3300034857 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - Total cells SoilN RepB EcoBCT.SoilN.5000.1.I3 DOE Joint Genome Institute (JGI) 3300034857 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 16306508 16749 10 0 7 0 Unrestricted 0.0 Single_particle_sort 3300020919 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera90 DOE Joint Genome Institute (JGI) 3300020919 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 8492525 8883 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300032872 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.June25.5000.01.C5 DOE Joint Genome Institute (JGI) 3300032872 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 6582815 6759 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300024203 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.E7 DOE Joint Genome Institute (JGI) 3300024203 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 1970870 2333 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020931 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera42 DOE Joint Genome Institute (JGI) 3300020931 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 10251124 10437 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034889 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells Soil RepA EcoBCT.Soil.5000.2.E3 DOE Joint Genome Institute (JGI) 3300034889 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 11398941 13353 6 0 4 0 Unrestricted 0.0 Single_particle_sort 3300048662 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.karukerense.extraction.1 DOE Joint Genome Institute (JGI) 3300048662 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 10899867 11609 6 0 6 0 Unrestricted 0.0 Single_particle_sort 3300007403 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C92_wellH05 DOE Joint Genome Institute (JGI) 3300007403 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 726142 921 1 0 1 0 SRX3201124 Unrestricted 0.0 Single_particle_sort 3300034246 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep2 HSBNCT.FG11.300.03.L10 DOE Joint Genome Institute (JGI) 3300034246 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 8603024 8132 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020751 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera82 DOE Joint Genome Institute (JGI) 3300020751 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5891710 6024 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300031441 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.Vis6.UnFx.1-dapi+.1 DOE Joint Genome Institute (JGI) 3300031441 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 10990716 11742 8 0 11 0 Unrestricted 0.0 Single_particle_sort 3300032807 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July09.5000.02.C6 DOE Joint Genome Institute (JGI) 3300032807 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 7444116 7743 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300036262 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Santa Monica Basin, California, United States - ANME aggregate JGI_Orphan.7059.BNCT.2.J4 DOE Joint Genome Institute (JGI) 3300036262 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.7988 -118.6476 3944786 4071 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300032956 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep3 HSBNCT.FGM.300.1.K13 DOE Joint Genome Institute (JGI) 3300032956 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 12172100 11154 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300005478 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis roots microbial communities from North Carolina, USA - Arabidopsis Cvi CL FACS sort 2 DOE Joint Genome Institute (JGI) 3300005478 Metagenome - Cell Enrichment MEGAHIT v. 0.2.0 Yes Yes scott.yourstone81@gmail.com, scott.yourstone81@gmail.com; dangl@email.unc.edu Scott Yourstone, Scott Yourstone; Jeff Dangl No Host-associated Plants Unclassified Roots Unclassified Arabidopsis roots 35.9077 -79.0508 2213435 10148 7 0 4 0 SRX2834395 Unrestricted 0.0 Single_particle_sort 3300049392 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.C5 DOE Joint Genome Institute (JGI) 3300049392 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 7506335 8185 5 0 6 1 Unrestricted 0.0 Single_particle_sort 3300017799 *Microbiome Permanent Draft Marine microbial communities from the Costa Rica Dome and surrounding waters Marine microbial communities from the Costa Rica Dome - N26 C4 mini metaG DOE Joint Genome Institute (JGI) 3300017799 Metagenome - Cell Enrichment MEGAHIT v. 1.0.6 Yes Yes msaito@whoi.edu Mak Saito No Environmental Aquatic Oceanic Marine Photic zone Seawater 0.8736 -97.0511 42998121 44392 24 0 28 0 SRX3375718 Unrestricted 0.0 Single_particle_sort 3300010556 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.D12.16S negative DOE Joint Genome Institute (JGI) 3300010556 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 762679 805 0 0 0 0 SRX2750316 Unrestricted 0.0 Single_particle_sort 3300036131 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_H5 DOE Joint Genome Institute (JGI) 3300036131 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 392814 445 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300020827 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera88 DOE Joint Genome Institute (JGI) 3300020827 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 3369115 3473 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020946 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera91 DOE Joint Genome Institute (JGI) 3300020946 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 13444717 13410 3 0 5 0 Unrestricted 0.0 Single_particle_sort 3300047256 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_AV1_F3 DOE Joint Genome Institute (JGI) 3300047256 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 29830685 70740 15 0 45 0 Restricted 79.97 Single_particle_sort 3300020748 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera50 DOE Joint Genome Institute (JGI) 3300020748 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5709794 5814 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300020935 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera32 DOE Joint Genome Institute (JGI) 3300020935 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 10805064 10849 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300017847 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-2_M3 DOE Joint Genome Institute (JGI) 3300017847 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 6.39 1032421 1212 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010700 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.J21.16S negative DOE Joint Genome Institute (JGI) 3300010700 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1927552 1959 1 0 1 0 SRX2751768 Unrestricted 0.0 Single_particle_sort 3300020934 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera47 DOE Joint Genome Institute (JGI) 3300020934 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 10668164 10790 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300032553 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake water, Wisconsin, United States - BchlTB.Aug20.5000.01 .C3 DOE Joint Genome Institute (JGI) 3300032553 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 4064827 4086 1 0 3 0 Unrestricted 0.0 Single_particle_sort 3300010953 *Microbiome Permanent Draft Mouse host associated microbial communities from Vienna, Austria Mouse cecal microbial communities from Vienna, Austria - N-Acetylneuraminic acid amended with D2O_NANAE DOE Joint Genome Institute (JGI) 3300010953 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes romans@mit.edu Roman Stocker No Host-associated Mammals Large intestine Digestive system Cecum Mouse cecum 48.2 16.37 8116444 8504 2 0 5 0 SRX2954876 Unrestricted 0.0 Single_particle_sort 3300017890 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-7_B3 DOE Joint Genome Institute (JGI) 3300017890 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 7340387 7633 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300034873 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - Total cells Plant RepA EcoBCT.Plant.5000.1.F4 DOE Joint Genome Institute (JGI) 3300034873 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 10000829 10391 5 0 4 0 Unrestricted 0.0 Single_particle_sort 3300036313 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.D6 DOE Joint Genome Institute (JGI) 3300036313 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 6739146 7058 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034234 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep3 HSBNCT.FG11.300.03.K13 DOE Joint Genome Institute (JGI) 3300034234 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 11010779 10049 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032983 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep2 HSBNCT.T11.300.1.L8 DOE Joint Genome Institute (JGI) 3300032983 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 10625067 8881 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010583 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.C15.GAL08 DOE Joint Genome Institute (JGI) 3300010583 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org; ruhl.ilona@gmail.com Ramunas Stepanauskas; Ilona Ruhl No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 868170 953 0 0 0 0 SRX2751205 Unrestricted 0.0 Single_particle_sort 3300010627 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.C8.16S negative DOE Joint Genome Institute (JGI) 3300010627 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1110856 1177 2 0 1 0 SRX2750256 Unrestricted 0.0 Single_particle_sort 3300020668 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera53 DOE Joint Genome Institute (JGI) 3300020668 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 11632147 11653 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300007452 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D84_LANv2 DOE Joint Genome Institute (JGI) 3300007452 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 10578188 10615 4 0 7 0 SRX2939923 Unrestricted 0.0 Single_particle_sort 3300034928 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_N3 DOE Joint Genome Institute (JGI) 3300034928 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 1403005 1312 0 0 2 0 Unrestricted 0.0 Single_particle_sort 3300033027 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep1 HSBNCT.N11.300.1.L5 DOE Joint Genome Institute (JGI) 3300033027 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2373263 2588 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300038891 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.1.2015 0410 MDM2 LHC4 sed p1 16S.G8.double-peak DOE Joint Genome Institute (JGI) 3300038891 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 461325 590 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034244 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep2 HSBNCT.FG11.300.03.G9 DOE Joint Genome Institute (JGI) 3300034244 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 2233660 2063 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034999 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.SSM.Mag.03.I9 DOE Joint Genome Institute (JGI) 3300034999 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 7944140 5322 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300046957 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.E6 DOE Joint Genome Institute (JGI) 3300046957 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 16680424 18795 3 0 9 0 Unrestricted 0.0 Single_particle_sort 3300021003 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera82 DOE Joint Genome Institute (JGI) 3300021003 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 8991687 8776 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034245 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep2 HSBNCT.FG11.300.03.H9 DOE Joint Genome Institute (JGI) 3300034245 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 4875685 4576 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034892 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - Total cells Soil RepA EcoBCT.Soil.5000.2.F3 DOE Joint Genome Institute (JGI) 3300034892 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 12039602 14018 2 0 5 0 Unrestricted 0.0 Single_particle_sort 3300047254 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_AV1_B3 DOE Joint Genome Institute (JGI) 3300047254 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 26258957 64367 11 0 22 0 Restricted 111.14 Single_particle_sort 3300020944 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera62 DOE Joint Genome Institute (JGI) 3300020944 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 11636185 12110 4 0 6 0 Unrestricted 0.0 Single_particle_sort 3300010555 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.K16.16S negative DOE Joint Genome Institute (JGI) 3300010555 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 589733 800 0 0 0 0 SRX2750420 Unrestricted 0.0 Single_particle_sort 3300020870 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera63 DOE Joint Genome Institute (JGI) 3300020870 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 6082718 6159 5 0 4 0 Unrestricted 0.0 Single_particle_sort 3300021452 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States - Total_DNA_A DOE Joint Genome Institute (JGI) 3300021452 Metagenome - Cell Enrichment spades v. 3.11.1-check Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 53146768 138617 114 0 173 2 Unrestricted 23.52 Single_particle_sort 3300017837 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells of freshwater protists from Biology Centre CAS, Ceske Budejovice, Czech Republic - ZER3_100Endo_I3 DOE Joint Genome Institute (JGI) 3300017837 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Freshwater Unclassified lab culture 48.9774 14.4478 10802802 9602 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300009226 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsB02-p2 DOE Joint Genome Institute (JGI) 3300009226 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 647293 870 0 0 0 0 SRX3205061 Unrestricted 0.0 Single_particle_sort 3300032810 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep1 HSBNCT.FGM.300.1.C3 DOE Joint Genome Institute (JGI) 3300032810 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 3806128 3619 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300010554 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.H12.16S negative DOE Joint Genome Institute (JGI) 3300010554 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 603387 786 0 0 0 0 SRX2749357 Unrestricted 0.0 Single_particle_sort 3300046960 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.N6 DOE Joint Genome Institute (JGI) 3300046960 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 20572904 21435 8 0 9 0 Unrestricted 0.0 Single_particle_sort 3300037382 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - BONCATsort_HPG_rep_1_92626events_18pcr DOE Joint Genome Institute (JGI) 3300037382 Metagenome - Cell Enrichment metaspades v. 3.13.0 Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5326 -110.7972 34242903 81506 45 0 85 0 Unrestricted 583.0 Single_particle_sort 3300047255 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_AV1_D3 DOE Joint Genome Institute (JGI) 3300047255 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 28575409 68064 14 0 40 0 Restricted 107.14 Single_particle_sort 3300020945 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera48 DOE Joint Genome Institute (JGI) 3300020945 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 12272507 12967 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020738 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera5 DOE Joint Genome Institute (JGI) 3300020738 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 3292169 3132 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020936 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera24 DOE Joint Genome Institute (JGI) 3300020936 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 11475846 11325 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300038868 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - PDU D8.10.2014 1013 MDM2 PDU D8 p10 16S.J18.double-seq DOE Joint Genome Institute (JGI) 3300038868 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 947422 1039 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036141 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_H7 DOE Joint Genome Institute (JGI) 3300036141 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 117424 151 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300009745 *Microbiome Permanent Draft Marine eukaryotic communities from CALCOFI LINE 67, Pacific Ocean, that are photosynthetic Marine eukaryotic communities from CALCOFI LINE 67, Pacific Ocean - C012_Sort48C_1 DOE Joint Genome Institute (JGI) 3300009745 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes azworden@mbari.org Alexandra Worden Yes 31587639.0 Environmental Aquatic Oceanic Marine Unclassified Marine 36.1443 -122.57 76135364 72066 2 9 1 6 SRX2933108 Unrestricted 0.0 Single_particle_sort 3300044893 *Microbiome Permanent Draft Deep subseafloor coalbed microbial communities from Japanese EEZ, North Pacific Ocean Enriched cells of subseafloor coalbed in Japanese EEZ, North Pacific Ocean - Sorted_minimetagenome_CSP506582_6119.15R2.36.T2.MeAM.D6 DOE Joint Genome Institute (JGI) 3300044893 Metagenome - Cell Enrichment metaspades v. 3.14.1 released based on JGI ITS Yes Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Terrestrial Unclassified Deep subsurface Unclassified Subseafloor coal bed 41.1766 142.2005 1014610 2890 4 0 3 0 Unrestricted 1014.51 Single_particle_sort 3300031431 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.Vis6.EtOH.1-dapi+.4 DOE Joint Genome Institute (JGI) 3300031431 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 21668524 22686 9 0 18 0 Unrestricted 0.0 Single_particle_sort 3300034334 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep3 HSBNCT.FG11.5000.02.L5 DOE Joint Genome Institute (JGI) 3300034334 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 9672800 10444 3 0 5 0 Unrestricted 0.0 Single_particle_sort 3300020779 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera70 DOE Joint Genome Institute (JGI) 3300020779 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 8915441 9127 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300010670 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.C12.16S negative DOE Joint Genome Institute (JGI) 3300010670 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1185161 1436 0 0 0 0 SRX2750906 Unrestricted 0.0 Single_particle_sort 3300034335 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep3 HSBNCT.FG11.5000.02.L6 DOE Joint Genome Institute (JGI) 3300034335 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 8653031 9251 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300036213 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Santa Monica Basin, California, United States - ANME aggregate JGI_Orphan.7180.BNCT.3.M5 DOE Joint Genome Institute (JGI) 3300036213 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 35.723 -118.9436 202445 227 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300038902 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.1.2015 0410 MDM2 LHC4 sed p1 16S.L11.double-seq DOE Joint Genome Institute (JGI) 3300038902 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 534028 689 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300031271 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.CF.EtOH.1-neg.2 DOE Joint Genome Institute (JGI) 3300031271 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 2221832 2376 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300024027 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.C8 DOE Joint Genome Institute (JGI) 3300024027 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 8133177 8914 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300047251 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_HPG3_C3 DOE Joint Genome Institute (JGI) 3300047251 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 38758502 84301 20 0 53 0 Restricted 100.4 Single_particle_sort 3300028687 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Erie, Ohio, United States - ER36.Total.D5 DOE Joint Genome Institute (JGI) 3300028687 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 41.935 -81.4783 11055830 23605 9 0 11 0 Unrestricted 37.14 Single_particle_sort 3300020941 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera43 DOE Joint Genome Institute (JGI) 3300020941 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 12054486 11906 3 0 5 0 Unrestricted 0.0 Single_particle_sort 3300020863 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera18 DOE Joint Genome Institute (JGI) 3300020863 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5849009 5879 0 0 2 0 Unrestricted 0.0 Single_particle_sort 3300005550 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - Helgoland Island plankton_Rei732 DOE Joint Genome Institute (JGI) 3300005550 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes hteeling@mpi-bremen.de Hanno Teeling No Environmental Aquatic Pelagic zone Marine Sediment Pelagic marine 54.181054 7.892828 626851 754 1 0 1 0 SRX2719457 Unrestricted 0.0 Single_particle_sort 3300024168 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.H9 DOE Joint Genome Institute (JGI) 3300024168 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 7213686 7953 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300010551 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.G13.16S negative DOE Joint Genome Institute (JGI) 3300010551 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 568507 773 0 0 0 0 SRX2750998 Unrestricted 0.0 Single_particle_sort 3300046973 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.L7 DOE Joint Genome Institute (JGI) 3300046973 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 20306011 20377 7 0 9 0 Unrestricted 0.0 Single_particle_sort 3300036136 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_G6 DOE Joint Genome Institute (JGI) 3300036136 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 236740 289 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300032951 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep2 HSBNCT.T11.300.1.E8 DOE Joint Genome Institute (JGI) 3300032951 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 3438058 3621 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300036337 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.M11 DOE Joint Genome Institute (JGI) 3300036337 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 284086 245 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034487 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.SSM.Mag.03.I7 DOE Joint Genome Institute (JGI) 3300034487 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 6992482 6350 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010472 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.H10.16S negative DOE Joint Genome Institute (JGI) 3300010472 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 237903 329 0 0 2 0 SRX2750806 Unrestricted 0.0 Single_particle_sort 3300020756 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera13 DOE Joint Genome Institute (JGI) 3300020756 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 6124509 6425 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300049417 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.K11 DOE Joint Genome Institute (JGI) 3300049417 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 6096293 6616 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300034241 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep2 HSBNCT.FG11.300.03.L8 DOE Joint Genome Institute (JGI) 3300034241 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 8580489 8522 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300024012 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.E11 DOE Joint Genome Institute (JGI) 3300024012 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 4730051 5444 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300038894 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.1.2015 0410 MDM2 LHC4 sed p1 16S.G10.double-peak DOE Joint Genome Institute (JGI) 3300038894 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 602416 761 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300008026 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D85_L00A DOE Joint Genome Institute (JGI) 3300008026 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 1611921 1609 0 0 0 0 SRX2156186 Unrestricted 0.0 Single_particle_sort 3300007440 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D59_L0v2 DOE Joint Genome Institute (JGI) 3300007440 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 7547993 6881 2 0 2 0 SRX2939909 Unrestricted 0.0 Single_particle_sort 3300023904 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells of freshwater protists from Biology Centre CAS, Ceske Budejovice, Czech Republic - JAMX8_1Endo3_H14 DOE Joint Genome Institute (JGI) 3300023904 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Freshwater Unclassified enrichment culture 48.9774 14.4478 841873 947 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300017862 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-4_F3 DOE Joint Genome Institute (JGI) 3300017862 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 6.08 3897754 4245 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300038895 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.1.2015 0410 MDM2 LHC4 sed p1 16S.E12.double-peak DOE Joint Genome Institute (JGI) 3300038895 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 3429745 3322 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300021030 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera51 DOE Joint Genome Institute (JGI) 3300021030 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 12717074 12123 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300007370 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C75_wellE04 DOE Joint Genome Institute (JGI) 3300007370 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 357788 463 0 0 0 0 SRX3200308 Unrestricted 0.0 Single_particle_sort 3300032948 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep2 HSBNCT.T11.300.1.D11 DOE Joint Genome Institute (JGI) 3300032948 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 1474480 1645 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034331 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep3 HSBNCT.FG11.5000.02.K5 DOE Joint Genome Institute (JGI) 3300034331 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 6924443 6751 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300031434 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.CF.EtOH.1-fish+.4 DOE Joint Genome Institute (JGI) 3300031434 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 28741967 29808 9 0 14 0 Unrestricted 0.0 Single_particle_sort 3300010663 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.B11.Aquificae DOE Joint Genome Institute (JGI) 3300010663 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1115373 1396 1 0 1 0 SRX2750809 Unrestricted 0.0 Single_particle_sort 3300049389 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.D4 DOE Joint Genome Institute (JGI) 3300049389 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 32749305 34276 22 0 26 1 Unrestricted 0.0 Single_particle_sort 3300034904 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_F3 DOE Joint Genome Institute (JGI) 3300034904 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 339912 365 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010548 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.E17.16S negative DOE Joint Genome Institute (JGI) 3300010548 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 575598 766 0 0 0 0 SRX2749509 Unrestricted 0.0 Single_particle_sort 3300034319 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells N11 rep2 HSBNCT.N11.5000.01.I3 DOE Joint Genome Institute (JGI) 3300034319 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3921 4387078 4758 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300033012 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep2 HSBNCT.N11.300.1.E10 DOE Joint Genome Institute (JGI) 3300033012 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3914211 4243 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300031435 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.CF.UnFx.1-dapi+.4 DOE Joint Genome Institute (JGI) 3300031435 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 8954680 9387 9 0 18 0 Unrestricted 0.0 Single_particle_sort 3300028701 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Michigan, Michigan, United States - MI23.DCL.Total.B5 DOE Joint Genome Institute (JGI) 3300028701 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.1333 -87.0 73733874 154001 32 0 45 0 Unrestricted 79.1 Single_particle_sort 3300031376 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.CF.UnFx.1-fish+.3 DOE Joint Genome Institute (JGI) 3300031376 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 14351548 15010 5 0 6 0 Unrestricted 0.0 Single_particle_sort 3300034905 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_G3 DOE Joint Genome Institute (JGI) 3300034905 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 3035365 2745 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300047248 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_HPG3_B3 DOE Joint Genome Institute (JGI) 3300047248 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 26918702 55328 12 0 35 0 Restricted 49.76 Single_particle_sort 3300020958 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera23 DOE Joint Genome Institute (JGI) 3300020958 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 3845896 4345 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300007576 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C19_wellD03 DOE Joint Genome Institute (JGI) 3300007576 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 24583 42 0 0 0 0 SRX3201341 Unrestricted 0.0 Single_particle_sort 3300036247 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.K8 DOE Joint Genome Institute (JGI) 3300036247 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 2374554 2451 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034258 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep1 HSBNCT.FG11.300.03.M6 DOE Joint Genome Institute (JGI) 3300034258 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 3225522 3381 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020783 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera85 DOE Joint Genome Institute (JGI) 3300020783 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 9104560 9359 5 0 1 0 Unrestricted 0.0 Single_particle_sort 3300024412 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from gastrointestinal tract of the lab mouse from Pacific Northwest National Laboratory (PNNL), Richland, Washington, United States - LIM_F_Water_Bulk DOE Joint Genome Institute (JGI) 3300024412 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov; aaron.wright@pnnl.gov Tanja Woyke; Aaron Wright No Host-associated Mammals Unclassified Digestive system Unclassified gastrointestinal tract 46.0 -119.0 23927097 28408 13 0 13 0 Unrestricted 0.0 Single_particle_sort 3300036693 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells N11 rep2 HSBNCT.N11.5000.01.H5 DOE Joint Genome Institute (JGI) 3300036693 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3921 5992137 6503 4 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020877 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera34 DOE Joint Genome Institute (JGI) 3300020877 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 6523023 6381 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300034842 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells PlantN RepC EcoBCT.PlantN.5000.1.K6 DOE Joint Genome Institute (JGI) 3300034842 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 22521119 23545 6 0 9 0 Unrestricted 0.0 Single_particle_sort 3300034295 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Bay of Concepcion, South Pacific Ocean - Ca. Thiopilula JBCH1603A1_Rep1_CE DOE Joint Genome Institute (JGI) 3300034295 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -36.51 -73.125 1179611 1311 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300007580 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C35_LANv2 DOE Joint Genome Institute (JGI) 3300007580 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 56751621 58615 16 0 30 0 SRX2939886 Unrestricted 0.0 Single_particle_sort 3300007413 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D92_L0 DOE Joint Genome Institute (JGI) 3300007413 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 2348901 2255 0 0 0 0 SRX2933101 Unrestricted 0.0 Single_particle_sort 3300024136 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.K5 DOE Joint Genome Institute (JGI) 3300024136 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 1184917 1343 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300046967 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.E7 DOE Joint Genome Institute (JGI) 3300046967 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 22142433 22462 7 0 11 0 Unrestricted 0.0 Single_particle_sort 3300034294 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Bay of Concepcion, South Pacific Ocean - Ca. Thiomargarita JBCH1603RB5_Rep4_CE DOE Joint Genome Institute (JGI) 3300034294 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -36.51 -73.125 16432483 18924 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032817 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep3 HSBNCT.FGM.300.1.C13 DOE Joint Genome Institute (JGI) 3300032817 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 6426416 5885 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020995 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera19 DOE Joint Genome Institute (JGI) 3300020995 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 7659162 7480 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300007703 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C61_wellC04 DOE Joint Genome Institute (JGI) 3300007703 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 36913 73 0 0 0 0 SRX3201342 Unrestricted 0.0 Single_particle_sort 3300032965 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.June20.5000.01.C6 DOE Joint Genome Institute (JGI) 3300032965 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 11814513 12884 5 0 5 0 Unrestricted 0.0 Single_particle_sort 3300034590 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.I3 DOE Joint Genome Institute (JGI) 3300034590 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 2201660 2311 1 0 1 0 SRX8394679 Unrestricted 0.0 Single_particle_sort 3300047264 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_AV2_G3 DOE Joint Genome Institute (JGI) 3300047264 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 25877507 52554 19 0 36 0 Restricted 704.28 Single_particle_sort 3300033020 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep2 HSBNCT.N11.300.1.M10 DOE Joint Genome Institute (JGI) 3300033020 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3169398 3329 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300005132 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME D05B25 DOE Joint Genome Institute (JGI) 3300005132 Metagenome - Cell Enrichment spades v. 3.0.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 73818541 74465 23 0 33 0 SRX2482142 Unrestricted 0.0 Single_particle_sort 3300010565 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.B22.16S negative DOE Joint Genome Institute (JGI) 3300010565 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 726814 855 0 0 0 0 SRX2749667 Unrestricted 0.0 Single_particle_sort 3300020994 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera75 DOE Joint Genome Institute (JGI) 3300020994 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 7626646 7574 5 0 7 0 Unrestricted 0.0 Single_particle_sort 3300032964 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July16.5000.01.C6 DOE Joint Genome Institute (JGI) 3300032964 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 5688163 6126 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010564 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.E10.16S negative DOE Joint Genome Institute (JGI) 3300010564 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 644610 843 0 0 0 0 SRX2749275 Unrestricted 0.0 Single_particle_sort 3300007569 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C32_wellF02 DOE Joint Genome Institute (JGI) 3300007569 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 3896 4 0 0 0 0 SRX3202252 Unrestricted 0.0 Single_particle_sort 3300046950 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.N5 DOE Joint Genome Institute (JGI) 3300046950 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 17896468 18128 3 0 8 0 Unrestricted 0.0 Single_particle_sort 3300007386 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C39_wellG03 DOE Joint Genome Institute (JGI) 3300007386 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 1088293 1376 0 0 0 0 SRX3200767 Unrestricted 0.0 Single_particle_sort 3300047265 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_AV3_B3 DOE Joint Genome Institute (JGI) 3300047265 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 17610353 30864 18 0 42 1 Restricted 154.05 Single_particle_sort 3300036191 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Santa Monica Basin, California, United States - ANME aggregate JGI_Orphan.7059.BNCT.2.K8 DOE Joint Genome Institute (JGI) 3300036191 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.7988 -118.6476 1378342 1477 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034425 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.F3 DOE Joint Genome Institute (JGI) 3300034425 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 2784581 2919 1 0 1 0 SRX8389151 Unrestricted 0.0 Single_particle_sort 3300010677 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.H9.16S negative DOE Joint Genome Institute (JGI) 3300010677 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1484908 1502 1 0 1 0 SRX2750274 Unrestricted 0.0 Single_particle_sort 3300036702 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep2 HSBNCT.FG11.5000.02.H3 DOE Joint Genome Institute (JGI) 3300036702 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 6491462 6434 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020631 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera42 DOE Joint Genome Institute (JGI) 3300020631 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 2576654 2583 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034823 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells PlantN RepA EcoBCT.PlantN.5000.1.E3 DOE Joint Genome Institute (JGI) 3300034823 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 7039370 7859 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034424 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.D3 DOE Joint Genome Institute (JGI) 3300034424 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 2745575 2924 0 0 0 0 SRX8389150 Unrestricted 0.0 Single_particle_sort 3300024020 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.D5 DOE Joint Genome Institute (JGI) 3300024020 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 5883032 7065 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010710 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.B21.16S negative DOE Joint Genome Institute (JGI) 3300010710 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 2826525 2896 1 0 0 0 SRX2751764 Unrestricted 0.0 Single_particle_sort 3300020619 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera77 DOE Joint Genome Institute (JGI) 3300020619 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 5805166 6137 4 0 3 0 Unrestricted 0.0 Single_particle_sort 3300033136 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep3 HSBNCT.N11.300.1.M13 DOE Joint Genome Institute (JGI) 3300033136 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3706876 3987 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300036303 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.1.I3 DOE Joint Genome Institute (JGI) 3300036303 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 5569553 5878 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010488 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.N5.16S negative DOE Joint Genome Institute (JGI) 3300010488 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 325519 424 0 0 0 0 SRX2750227 Unrestricted 0.0 Single_particle_sort 3300024144 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.I4 DOE Joint Genome Institute (JGI) 3300024144 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 2281509 2536 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300003675 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from Chapel Hill, North Carolina, USA - Col Cl FACS DOE Joint Genome Institute (JGI) 3300003675 Metagenome - Cell Enrichment SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9077 -79.0508 38232 95 4 1 8 1 Unrestricted 0.0 Single_particle_sort 3300024158 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.G7 DOE Joint Genome Institute (JGI) 3300024158 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 4369643 4990 0 0 2 0 Unrestricted 0.0 Single_particle_sort 3300049410 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.G10 DOE Joint Genome Institute (JGI) 3300049410 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 4495307 4898 5 0 6 0 Unrestricted 0.0 Single_particle_sort 3300046932 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment.pos_JMV.Tmarg.Fil1.2.B3 DOE Joint Genome Institute (JGI) 3300046932 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 16916051 17261 3 0 6 0 Unrestricted 0.0 Single_particle_sort 3300047261 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_AV2_D3 DOE Joint Genome Institute (JGI) 3300047261 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 13494497 25645 9 0 10 0 Restricted 107.07 Single_particle_sort 3300020853 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera34 DOE Joint Genome Institute (JGI) 3300020853 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5225501 5299 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300032961 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep2 HSBNCT.T11.300.1.C9 DOE Joint Genome Institute (JGI) 3300032961 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 3038120 3013 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034513 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.PSCntrl.SYBR.02.I7 DOE Joint Genome Institute (JGI) 3300034513 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 1361010 1507 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020991 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera35 DOE Joint Genome Institute (JGI) 3300020991 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 7266384 7394 3 0 5 0 Unrestricted 0.0 Single_particle_sort 3300020646 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera34 DOE Joint Genome Institute (JGI) 3300020646 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 6941443 6933 0 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010686 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.M18.16S negative DOE Joint Genome Institute (JGI) 3300010686 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1596143 1646 1 0 1 0 SRX2750446 Unrestricted 0.0 Single_particle_sort 3300041873 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Cand. Thiomargarita magnifica 58 DOE Joint Genome Institute (JGI) 3300041873 Metagenome - Cell Enrichment spades v. 3.14.1 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 8499430 8552 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300021526 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from agricultural soil in Iowa, United States - IA12soil_GW_GH6A(+) DOE Joint Genome Institute (JGI) 3300021526 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov; aaron.wright@pnnl.gov Tanja Woyke; Aaron Wright No Environmental Terrestrial Unclassified Soil Agricultural land soil 41.9167 -93.75 3879629 4561 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300010561 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.F10.16S negative DOE Joint Genome Institute (JGI) 3300010561 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 690806 839 0 0 0 0 SRX2750215 Unrestricted 0.0 Single_particle_sort 3300007447 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge DR09_HA DOE Joint Genome Institute (JGI) 3300007447 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 8814733 9153 7 0 6 0 SRX2932862 Unrestricted 0.0 Single_particle_sort 3300007490 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C37_LANv2 DOE Joint Genome Institute (JGI) 3300007490 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 38633997 40277 15 0 29 0 SRX2939118 Unrestricted 0.0 Single_particle_sort 3300020766 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera52 DOE Joint Genome Institute (JGI) 3300020766 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7807556 7991 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300028680 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Superior, Ontario, Canada - control SU02.SRF DOE Joint Genome Institute (JGI) 3300028680 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Engineered Industrial production Sheath fluid Chemical products Unclassified sheath fluid 37.9313 -122.0217 1598734 3926 1 0 3 0 Unrestricted 25.22 Single_particle_sort 3300010602 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.L14.16S negative DOE Joint Genome Institute (JGI) 3300010602 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 879420 1074 0 0 0 0 SRX2751207 Unrestricted 0.0 Single_particle_sort 3300017852 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-6_L3 DOE Joint Genome Institute (JGI) 3300017852 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 2582374 3114 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036330 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.K6 DOE Joint Genome Institute (JGI) 3300036330 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 9672194 10113 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300009271 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsF07-p2 DOE Joint Genome Institute (JGI) 3300009271 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 2755275 3244 1 0 1 0 SRX3205188 Unrestricted 0.0 Single_particle_sort 3300034291 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Benguela upwelling system, South Atlantic Ocean - Beggiatoaceae JNN162BE_Rep2_CE DOE Joint Genome Institute (JGI) 3300034291 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beverlyflood@mac.com Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -23.0 14.0692 3141811 2822 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300047132 *Microbiome Permanent Draft Freshwater fungal communities from various locations Enriched cells from freshwater from SG Pond, Ann Arbor, Michigan, United States - PSC103 Chytrid MDA DOE Joint Genome Institute (JGI) 3300047132 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes tyjames@umich.edu Timothy Y. James No Environmental Aquatic Pond Freshwater Unclassified Freshwater 42.242339 -83.732756 33522180 49471 3 3 3 2 Restricted 0.0 Single_particle_sort 3300010653 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.J13.16S negative DOE Joint Genome Institute (JGI) 3300010653 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1293378 1338 0 0 1 0 SRX2750997 Unrestricted 0.0 Single_particle_sort 3300047229 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_AV2_C3 DOE Joint Genome Institute (JGI) 3300047229 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 22575649 43820 17 0 21 0 Restricted 91.97 Single_particle_sort 3300015047 *Microbiome Permanent Draft Mouse host associated microbial communities from Vienna, Austria Mouse cecal microbial communities from Vienna, Austria - N-Acetylneuraminic amended D2O_March DOE Joint Genome Institute (JGI) 3300015047 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes romans@mit.edu Roman Stocker No Host-associated Mammals Large intestine Digestive system Cecum Mouse cecum 48.2 16.37 69756325 71368 35 0 34 0 SRX3203978 Unrestricted 0.0 Single_particle_sort 3300031979 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs Polaribacter B6 DOE Joint Genome Institute (JGI) 3300031979 Metagenome - Cell Enrichment spades v. 3.12.0 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 42700 56 3 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010529 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.C15.S2R-29 DOE Joint Genome Institute (JGI) 3300010529 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 640154 693 1 0 0 0 SRX2750399 Unrestricted 0.0 Single_particle_sort 3300034916 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_B3 DOE Joint Genome Institute (JGI) 3300034916 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 1164583 1242 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300032998 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July30.5000.01.C5 DOE Joint Genome Institute (JGI) 3300032998 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 3264044 3369 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020968 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera5 DOE Joint Genome Institute (JGI) 3300020968 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 5702880 5739 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010598 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.M12.16S negative DOE Joint Genome Institute (JGI) 3300010598 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 791821 1025 0 0 1 0 SRX2749358 Unrestricted 0.0 Single_particle_sort 3300032929 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep2 HSBNCT.FGM.300.1.D9 DOE Joint Genome Institute (JGI) 3300032929 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 6360357 6258 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020886 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera18 DOE Joint Genome Institute (JGI) 3300020886 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7118617 6939 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036240 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_G10 DOE Joint Genome Institute (JGI) 3300036240 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 24708 29 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034209 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep2 HSBNCT.FG11.300.03.D9 DOE Joint Genome Institute (JGI) 3300034209 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 1605815 1416 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300017803 *Microbiome Permanent Draft Marine microbial communities from the Costa Rica Dome and surrounding waters Marine microbial communities from the Costa Rica Dome - N26 B6 mini metaG DOE Joint Genome Institute (JGI) 3300017803 Metagenome - Cell Enrichment MEGAHIT v. 1.0.6 Yes Yes msaito@whoi.edu Mak Saito No Environmental Aquatic Oceanic Marine Photic zone Seawater 0.8736 -97.0511 43302057 49915 28 0 39 0 SRX3375630 Unrestricted 0.0 Single_particle_sort 3300024141 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.E3 DOE Joint Genome Institute (JGI) 3300024141 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 1690448 1917 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300032527 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep2 HSBNCT.T11.300.1.E10 DOE Joint Genome Institute (JGI) 3300032527 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 5250808 5391 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036194 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Santa Monica Basin, California, United States - ANME aggregate JGI_Orphan.7059.BNCT.2.L6 DOE Joint Genome Institute (JGI) 3300036194 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.7988 -118.6476 399553 441 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020802 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera7 DOE Joint Genome Institute (JGI) 3300020802 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 12061326 12435 5 0 5 0 Unrestricted 0.0 Single_particle_sort 3300036297 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.1.D5 DOE Joint Genome Institute (JGI) 3300036297 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 9290816 9667 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300033085 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep3 HSBNCT.N11.300.1.N13 DOE Joint Genome Institute (JGI) 3300033085 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 1924825 2064 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020635 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera24 DOE Joint Genome Institute (JGI) 3300020635 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 5207203 4930 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300007377 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C02_wellA02 DOE Joint Genome Institute (JGI) 3300007377 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 540309 672 3 0 2 0 SRX3200199 Unrestricted 0.0 Single_particle_sort 3300021037 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera32 DOE Joint Genome Institute (JGI) 3300021037 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 12623499 12543 6 0 8 0 Unrestricted 0.0 Single_particle_sort 3300020909 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera85 DOE Joint Genome Institute (JGI) 3300020909 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7826308 8186 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300036195 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Santa Monica Basin, California, United States - ANME aggregate JGI_Orphan.7059.BNCT.2.L7 DOE Joint Genome Institute (JGI) 3300036195 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.7988 -118.6476 2858051 3207 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300024213 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.J13 DOE Joint Genome Institute (JGI) 3300024213 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 7480918 7934 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020634 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera54 DOE Joint Genome Institute (JGI) 3300020634 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 4537972 4564 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300033084 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep3 HSBNCT.N11.300.1.N14 DOE Joint Genome Institute (JGI) 3300033084 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3411150 3655 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300007381 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C19_wellD03 DOE Joint Genome Institute (JGI) 3300007381 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 1630063 2046 0 0 1 0 SRX3200278 Unrestricted 0.0 Single_particle_sort 3300021524 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from agricultural soil in Iowa, United States - IA12soil_MG_GH6A(+) DOE Joint Genome Institute (JGI) 3300021524 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes aaron.wright@pnnl.gov; twoyke@lbl.gov Aaron Wright; Tanja Woyke No Environmental Terrestrial Agricultural land Soil Unclassified soil 41.9167 -93.75 3394810 4134 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010684 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.G12.16S negative DOE Joint Genome Institute (JGI) 3300010684 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1330816 1621 0 0 0 0 SRX2749356 Unrestricted 0.0 Single_particle_sort 3300020644 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera65 DOE Joint Genome Institute (JGI) 3300020644 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 6668971 6631 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300007689 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C09_wellB01 DOE Joint Genome Institute (JGI) 3300007689 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 18228 32 0 0 0 0 SRX3201148 Unrestricted 0.0 Single_particle_sort 3300021525 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from gastrointestinal tract of the lab mouse from Pacific Northwest National Laboratory (PNNL), Richland, Washington, United States - LIM_B_Vancomycin_Neg DOE Joint Genome Institute (JGI) 3300021525 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov; aaron.wright@pnnl.gov Tanja Woyke; Aaron Wright No Host-associated Mammals Unclassified Digestive system Unclassified gastrointestinal tract 46.0 -119.0 892284 1244 2 0 0 0 Unrestricted 0.0 Single_particle_sort 3300047123 *Microbiome Permanent Draft Freshwater fungal communities from various locations Enriched cells from freshwater from Lake Erie, Ontario, Canada - PSC142 Chytrid MDA DOE Joint Genome Institute (JGI) 3300047123 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes tyjames@umich.edu Timothy Y. James No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.98305 -82.62475 71486354 80361 3 1 7 5 Restricted 0.0 Single_particle_sort 3300010685 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.D7.16S negative DOE Joint Genome Institute (JGI) 3300010685 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1522148 1626 1 0 1 0 SRX2750253 Unrestricted 0.0 Single_particle_sort 3300020645 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera25 DOE Joint Genome Institute (JGI) 3300020645 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 6469838 6803 4 0 3 0 Unrestricted 0.0 Single_particle_sort 3300020765 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera71 DOE Joint Genome Institute (JGI) 3300020765 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 8132934 7945 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300049407 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.H10 DOE Joint Genome Institute (JGI) 3300049407 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 22041966 23750 12 0 17 0 Unrestricted 0.0 Single_particle_sort 3300036230 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_F8 DOE Joint Genome Institute (JGI) 3300036230 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 182977 214 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300024119 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.I12 DOE Joint Genome Institute (JGI) 3300024119 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 11012631 12341 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300038927 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Sandy's Spring West, Nevada, USA - SSWsed.3.2015 0414 MDM2 SSWsed p3 16S.B12.double-peak DOE Joint Genome Institute (JGI) 3300038927 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 40.653 -119.3749 590331 724 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300020764 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera22 DOE Joint Genome Institute (JGI) 3300020764 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7975303 7721 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300032794 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep3 HSBNCT.T11.300.1.F15 DOE Joint Genome Institute (JGI) 3300032794 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 3088424 3118 3 0 5 0 Unrestricted 0.0 Single_particle_sort 3300014376 *Microbiome Permanent Draft Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India Lab enriched petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India - point GR3 NA 63 Life Technologies 3300014376 Metagenome - Cell Enrichment MetaVelvet v1.2.01 released by JGI data releasing policy No Yes sarkar.jayeeta12@gmail.com Jayeeta Sarkar No Engineered Bioremediation Unclassified Hydrocarbon Unclassified petroleum sludge 26.18471 91.80725 193157654 774983 646 18 1009 30 SRX2512230 0.0 Single_particle_sort 3300024053 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities from Utah, United States - BONCAT_SYTO_Terrestrial_sediment - 12 DOE Joint Genome Institute (JGI) 3300024053 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 163572897 473462 197 0 339 1 Unrestricted 17.55 Single_particle_sort 3300034850 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - Total cells SoilN RepA EcoBCT.SoilN.5000.1.F4 DOE Joint Genome Institute (JGI) 3300034850 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 10946133 12831 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300020884 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera40 DOE Joint Genome Institute (JGI) 3300020884 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 6617119 6868 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300010443 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.B6.16S negative DOE Joint Genome Institute (JGI) 3300010443 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 131010 150 0 0 0 0 SRX2748700 Unrestricted 0.0 Single_particle_sort 3300009259 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsC10-p2 DOE Joint Genome Institute (JGI) 3300009259 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 1634730 2090 0 0 0 0 SRX3205078 Unrestricted 0.0 Single_particle_sort 3300034914 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_M4 DOE Joint Genome Institute (JGI) 3300034914 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 26877 35 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034309 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells T11 rep1 HSBNCT.T11.5000.01.F6 DOE Joint Genome Institute (JGI) 3300034309 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3919 8166144 8240 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036340 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.M9 DOE Joint Genome Institute (JGI) 3300036340 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 6107521 6185 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300023391 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities from Utah, United States - BONCAT_SYTO_Terrestrial_sediment - 1 DOE Joint Genome Institute (JGI) 3300023391 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 109883857 331512 140 0 237 1 Unrestricted 28.03 Single_particle_sort 3300020885 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera70 DOE Joint Genome Institute (JGI) 3300020885 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 6256032 6938 5 0 6 0 Unrestricted 0.0 Single_particle_sort 3300009287 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsD10UF DOE Joint Genome Institute (JGI) 3300009287 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes hatzenpichler@caltech.edu, roland.hatzenpichler@montana.edu; vorphan@gps.caltech.edu Hatzenpichler, Roland Hatzenpichler; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 7775302 8192 2 0 2 0 SRX3204469 Unrestricted 0.0 Single_particle_sort 3300034915 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_N4 DOE Joint Genome Institute (JGI) 3300034915 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 212511 264 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300007437 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D93_LNv2 DOE Joint Genome Institute (JGI) 3300007437 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 5727250 5655 2 0 2 0 SRX2938628 Unrestricted 0.0 Single_particle_sort 3300034867 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - Total cells SoilN RepC EcoBCT.SoilN.5000.1.L6 DOE Joint Genome Institute (JGI) 3300034867 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 6166649 6623 6 0 7 0 Unrestricted 0.0 Single_particle_sort 3300033086 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep3 HSBNCT.N11.300.1.F14 DOE Joint Genome Institute (JGI) 3300033086 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2926092 3054 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020636 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera60 DOE Joint Genome Institute (JGI) 3300020636 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 5244661 5088 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034368 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells T11 rep2 HSBNCT.T11.5000.01.H5 DOE Joint Genome Institute (JGI) 3300034368 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3919 8188402 8322 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032833 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep2 HSBNCT.FGM.300.1.M8 DOE Joint Genome Institute (JGI) 3300032833 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 11917059 11007 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300046942 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.E4 DOE Joint Genome Institute (JGI) 3300046942 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 19211527 20027 5 0 7 0 Unrestricted 0.0 Single_particle_sort 3300036196 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Santa Monica Basin, California, United States - ANME aggregate JGI_Orphan.7059.BNCT.2.M6 DOE Joint Genome Institute (JGI) 3300036196 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.7988 -118.6476 879252 887 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034296 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Bay of Concepcion, South Pacific Ocean - Ca. Thiopilula JBCH1603A1_Rep2_CE DOE Joint Genome Institute (JGI) 3300034296 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -36.51 -73.125 1328549 1429 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034394 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Bay of Concepcion, South Pacific Ocean - Ca. Thiopilula JBCH1603RB1_Rep4_CE DOE Joint Genome Institute (JGI) 3300034394 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -36.51 -73.125 16481218 16529 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300005123 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrospira DOME DR11B41 DOE Joint Genome Institute (JGI) 3300005123 Metagenome - Cell Enrichment spades v. 3.0.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 12658255 12690 5 0 3 0 SRX2482151 Unrestricted 0.0 Single_particle_sort 3300020761 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera69 DOE Joint Genome Institute (JGI) 3300020761 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7466631 7528 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300036252 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.N3 DOE Joint Genome Institute (JGI) 3300036252 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 1358475 1336 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300020820 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera89 DOE Joint Genome Institute (JGI) 3300020820 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 1898687 2034 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300007673 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C79_wellF06 DOE Joint Genome Institute (JGI) 3300007673 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 27341 50 0 0 0 0 SRX3202255 Unrestricted 0.0 Single_particle_sort 3300021013 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera39 DOE Joint Genome Institute (JGI) 3300021013 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 9931170 9898 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300021521 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from gastrointestinal tract of the lab mouse from Pacific Northwest National Laboratory (PNNL), Richland, Washington, United States - LIM_B_Vancomycin_Bulk DOE Joint Genome Institute (JGI) 3300021521 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes aaron.wright@pnnl.gov; twoyke@lbl.gov Aaron Wright; Tanja Woyke No Host-associated Mammals Unclassified Digestive system Unclassified gastrointestinal tract 46.0 -119.0 1219495 1599 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300007384 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C79_wellF06 DOE Joint Genome Institute (JGI) 3300007384 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 658616 865 0 0 0 0 SRX3200778 Unrestricted 0.0 Single_particle_sort 3300010566 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.M15.16S negative DOE Joint Genome Institute (JGI) 3300010566 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 724387 857 0 0 0 0 SRX2751211 Unrestricted 0.0 Single_particle_sort 3300020996 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera20 DOE Joint Genome Institute (JGI) 3300020996 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 7816556 7870 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300020641 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera92 DOE Joint Genome Institute (JGI) 3300020641 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 6169957 6130 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010681 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.N10.16S negative DOE Joint Genome Institute (JGI) 3300010681 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1560813 1563 1 0 1 0 SRX2750318 Unrestricted 0.0 Single_particle_sort 3300047082 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from seawater in Basse-Terre, Guadeloupe - No.Template.Control.seawater_JMV.Tmarg.Fil1.2.J2 DOE Joint Genome Institute (JGI) 3300047082 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp seawater 16.2781 -61.5582 20478839 20458 8 0 9 0 Unrestricted 0.0 Single_particle_sort 3300032800 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep3 HSBNCT.FGM.300.1.L14 DOE Joint Genome Institute (JGI) 3300032800 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 19693212 17606 3 0 5 0 Unrestricted 0.0 Single_particle_sort 3300047266 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_AV3_D3 DOE Joint Genome Institute (JGI) 3300047266 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 22714445 41155 19 0 32 0 Restricted 164.39 Single_particle_sort 3300007385 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C07_wellB03 DOE Joint Genome Institute (JGI) 3300007385 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 938952 1156 0 0 0 0 SRX3200233 Unrestricted 0.0 Single_particle_sort 3300017897 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-3_I3 DOE Joint Genome Institute (JGI) 3300017897 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 8863376 9563 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034426 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.C3 DOE Joint Genome Institute (JGI) 3300034426 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 2460829 2555 1 0 1 0 SRX8389152 Unrestricted 0.0 Single_particle_sort 3300032768 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.Aug07.5000.01.C4 DOE Joint Genome Institute (JGI) 3300032768 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 3471526 3580 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010620 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.E12.16S negative DOE Joint Genome Institute (JGI) 3300010620 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 901235 1128 0 0 0 0 SRX2750909 Unrestricted 0.0 Single_particle_sort 3300020798 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera77 DOE Joint Genome Institute (JGI) 3300020798 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 11414490 11808 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300003687 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis roots microbial communities from Chapel Hill, North Carolina, USA - Cvi Cl nosort DOE Joint Genome Institute (JGI) 3300003687 Metagenome - Cell Enrichment SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Unclassified Roots Unclassified Arabidopsis roots 35.9077 -79.0508 112856154 208986 24 14 35 27 Unrestricted 0.0 Single_particle_sort 3300020881 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera28 DOE Joint Genome Institute (JGI) 3300020881 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 6360427 6675 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300024146 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7061.QLV.BNCT.01.K7 DOE Joint Genome Institute (JGI) 3300024146 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 2182238 2676 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034939 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_M4 DOE Joint Genome Institute (JGI) 3300034939 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 291468 370 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034911 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_N3 DOE Joint Genome Institute (JGI) 3300034911 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 2447427 2646 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300021159 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States - 4hB_Boncat_plus DOE Joint Genome Institute (JGI) 3300021159 Metagenome - Cell Enrichment spades v. 3.10.1 Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 29126465 88848 51 0 70 0 Unrestricted 35.54 Single_particle_sort 3300034832 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells PlantN RepB EcoBCT.PlantN.5000.1.H4 DOE Joint Genome Institute (JGI) 3300034832 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 9844926 10393 0 0 3 0 Unrestricted 0.0 Single_particle_sort 3300007462 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D35_HANv2 DOE Joint Genome Institute (JGI) 3300007462 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 14233830 13235 5 0 9 0 SRX2939173 Unrestricted 0.0 Single_particle_sort 3300020658 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera54 DOE Joint Genome Institute (JGI) 3300020658 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 8946827 9094 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300014359 *Microbiome Permanent Draft Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India Lab enriched petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India - point GR3 NA 91 Life Technologies 3300014359 Metagenome - Cell Enrichment MetaVelvet v1.2.01 released by JGI data releasing policy No Yes sarkar.jayeeta12@gmail.com Jayeeta Sarkar No Engineered Bioremediation Unclassified Hydrocarbon Unclassified petroleum sludge 26.18471 91.80725 68551300 202237 177 5 314 9 SRX2512230 0.0 Single_particle_sort 3300010707 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.K14.16S negative DOE Joint Genome Institute (JGI) 3300010707 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 2330575 2220 1 0 1 0 SRX2751202 Unrestricted 0.0 Single_particle_sort 3300036203 *Microbiome Permanent Draft Marine microalgae viral communities from raceway pond in Palavas-les-Flots, France Enriched cells of marine microalgae from raceway pond in Palavas-les-Flots, France - 23.10.P4C MEGA virome DOE Joint Genome Institute (JGI) 3300036203 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes guillaume.blanc@mio.osupytheas.fr Guillaume Blanc No Host-associated Algae Unclassified Microalgae Unclassified marine microalgae 43.5198 3.9073 20134401 21751 6 0 7 0 Unrestricted 0.0 Single_particle_sort 3300024026 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.G9 DOE Joint Genome Institute (JGI) 3300024026 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 7721611 8485 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010625 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.K19.16S negative DOE Joint Genome Institute (JGI) 3300010625 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 899944 1161 0 0 0 0 SRX2749598 Unrestricted 0.0 Single_particle_sort 3300010482 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.C4.Thermi DOE Joint Genome Institute (JGI) 3300010482 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 284703 384 1 0 0 0 SRX2750216 Unrestricted 0.0 Single_particle_sort 3300007698 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C86_wellG05 DOE Joint Genome Institute (JGI) 3300007698 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 32105 54 0 0 0 0 SRX3202759 Unrestricted 0.0 Single_particle_sort 3300034237 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep2 HSBNCT.FG11.300.03.H11 DOE Joint Genome Institute (JGI) 3300034237 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 3063349 3201 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010624 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.J9.16S negative DOE Joint Genome Institute (JGI) 3300010624 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1051078 1161 0 0 0 0 SRX2750275 Unrestricted 0.0 Single_particle_sort 3300021009 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera23 DOE Joint Genome Institute (JGI) 3300021009 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 9341019 9399 5 0 6 0 Unrestricted 0.0 Single_particle_sort 3300017845 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-2_L3 DOE Joint Genome Institute (JGI) 3300017845 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 6.39 405929 510 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036341 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.N3 DOE Joint Genome Institute (JGI) 3300036341 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 3815363 4256 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300032571 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep3 HSBNCT.T11.300.1.K15 DOE Joint Genome Institute (JGI) 3300032571 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 6500187 5753 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034851 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - Total cells SoilN RepA EcoBCT.SoilN.5000.1.F5 DOE Joint Genome Institute (JGI) 3300034851 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 9304004 10522 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300031353 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.CF.UnFx.1-dapi+.1 DOE Joint Genome Institute (JGI) 3300031353 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 6969301 7307 7 0 9 0 Unrestricted 0.0 Single_particle_sort 3300017844 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-2_H3 DOE Joint Genome Institute (JGI) 3300017844 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 6.39 587169 623 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300023390 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities from Utah, United States - BONCAT_SYTO_Terrestrial_sediment - 7 DOE Joint Genome Institute (JGI) 3300023390 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 104995803 295870 150 0 224 0 Unrestricted 15.7 Single_particle_sort 3300020937 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera23 DOE Joint Genome Institute (JGI) 3300020937 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 11149608 11399 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300020825 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera47 DOE Joint Genome Institute (JGI) 3300020825 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 3335234 3387 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036219 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.G6 DOE Joint Genome Institute (JGI) 3300036219 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 2400660 2568 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300024130 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.E9 DOE Joint Genome Institute (JGI) 3300024130 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 352415 467 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300036231 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_G8 DOE Joint Genome Institute (JGI) 3300036231 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 115399 169 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300009227 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsB12-p3 DOE Joint Genome Institute (JGI) 3300009227 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 702106 928 0 0 0 0 SRX3205302 Unrestricted 0.0 Single_particle_sort 3300017836 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells of marine protists from Biology Centre CAS, Ceske Budejovice, Czech Republic - MCH_50Endo_G3 DOE Joint Genome Institute (JGI) 3300017836 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Marine Unclassified lab culture 48.9774 14.4478 46666 55 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300005138 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME D15B65 DOE Joint Genome Institute (JGI) 3300005138 Metagenome - Cell Enrichment spades v. 3.0.0 Nikos: made them private temporary due to Tanja;s request for quality control check No Yes wagner@microbial-ecology.net Michael Wagner Yes 28386012.0 Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 103653977 111069 30 0 45 0 SRX2482144 Unrestricted 0.0 Single_particle_sort 3300020824 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera25 DOE Joint Genome Institute (JGI) 3300020824 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 3208489 3202 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300020773 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera63 DOE Joint Genome Institute (JGI) 3300020773 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 8566898 8436 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300007369 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C80_wellF05 DOE Joint Genome Institute (JGI) 3300007369 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 235607 298 0 0 0 0 SRX3200780 Unrestricted 0.0 Single_particle_sort 3300007586 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C13_HANv2 DOE Joint Genome Institute (JGI) 3300007586 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 85142048 92733 3 5 2 10 SRX2939063 Unrestricted 0.0 Single_particle_sort 3300046956 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.B6 DOE Joint Genome Institute (JGI) 3300046956 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 1297200 1458 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007380 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C62_wellC05 DOE Joint Genome Institute (JGI) 3300007380 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 650922 827 0 0 1 0 SRX3200265 Unrestricted 0.0 Single_particle_sort 3300007807 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C33_wellF03 DOE Joint Genome Institute (JGI) 3300007807 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 16386 23 0 0 0 0 SRX3202254 Unrestricted 0.0 Single_particle_sort 3300034848 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells SoilN RepA EcoBCT.SoilN.5000.1.E6 DOE Joint Genome Institute (JGI) 3300034848 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 9225470 10219 7 0 6 0 Unrestricted 0.0 Single_particle_sort 3300031386 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.CF.UnFx.1-fish+.2 DOE Joint Genome Institute (JGI) 3300031386 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 8215347 8753 12 0 8 0 Unrestricted 0.0 Single_particle_sort 3300033026 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep2 HSBNCT.N11.300.1.E8 DOE Joint Genome Institute (JGI) 3300033026 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3212512 3335 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032804 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July30.5000.01.C7 DOE Joint Genome Institute (JGI) 3300032804 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 3872097 3936 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034262 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep1 HSBNCT.FG11.300.03.F4 DOE Joint Genome Institute (JGI) 3300034262 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 1271168 1414 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036344 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.N8 DOE Joint Genome Institute (JGI) 3300036344 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 3954878 4295 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034910 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_M3 DOE Joint Genome Institute (JGI) 3300034910 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 5949332 7443 0 2 0 1 Unrestricted 0.0 Single_particle_sort 3300036246 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.K7 DOE Joint Genome Institute (JGI) 3300036246 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 2596583 2710 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034854 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells SoilN RepB EcoBCT.SoilN.5000.1.H4 DOE Joint Genome Institute (JGI) 3300034854 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 15790905 15424 10 0 8 0 Unrestricted 0.0 Single_particle_sort 3300020880 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera13 DOE Joint Genome Institute (JGI) 3300020880 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 6278318 6568 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300007577 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C50_LANv2 DOE Joint Genome Institute (JGI) 3300007577 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 52996290 56690 14 0 25 0 SRX2939120 Unrestricted 0.0 Single_particle_sort 3300017841 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-2_F3 DOE Joint Genome Institute (JGI) 3300017841 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 6.39 138129 181 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034855 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells SoilN RepB EcoBCT.SoilN.5000.1.H5 DOE Joint Genome Institute (JGI) 3300034855 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 13325636 13641 3 0 8 0 Unrestricted 0.0 Single_particle_sort 3300020808 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera72 DOE Joint Genome Institute (JGI) 3300020808 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 14952366 15261 4 0 7 0 Unrestricted 0.0 Single_particle_sort 3300010592 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.J16.16S negative DOE Joint Genome Institute (JGI) 3300010592 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 800258 997 0 0 0 0 SRX2750423 Unrestricted 0.0 Single_particle_sort 3300031377 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.CF.EtOH.1-neg.1 DOE Joint Genome Institute (JGI) 3300031377 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 2789715 2987 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032992 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.Aug07.5000.01.C3 DOE Joint Genome Institute (JGI) 3300032992 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 7465033 7585 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300020962 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera18 DOE Joint Genome Institute (JGI) 3300020962 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 4619460 4985 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300020869 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera24 DOE Joint Genome Institute (JGI) 3300020869 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5768439 6141 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300032899 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep1 HSBNCT.FGM.300.1.E3 DOE Joint Genome Institute (JGI) 3300032899 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 5766114 5603 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300028927 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Erie, Ontario, Canada - ER10.Small.C5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028927 Metagenome - Cell Enrichment SPAdes v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.68 -79.6916 5913909 7709 1 0 1 0 Unrestricted 195.18 Single_particle_sort 3300010621 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.G11.16S negative DOE Joint Genome Institute (JGI) 3300010621 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 889693 1145 0 0 0 0 SRX2749289 Unrestricted 0.0 Single_particle_sort 3300010680 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.G20.16S negative DOE Joint Genome Institute (JGI) 3300010680 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1513208 1561 1 0 1 0 SRX2750456 Unrestricted 0.0 Single_particle_sort 3300020640 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera90 DOE Joint Genome Institute (JGI) 3300020640 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 6111725 6072 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300020789 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera62 DOE Joint Genome Institute (JGI) 3300020789 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 10404675 10492 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300008027 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge DR13_LAN DOE Joint Genome Institute (JGI) 3300008027 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 9925037 10006 0 0 1 0 SRX2338752 Unrestricted 0.0 Single_particle_sort 3300017858 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-6_J3 DOE Joint Genome Institute (JGI) 3300017858 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 3098592 3598 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010608 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.B11.GAL08 DOE Joint Genome Institute (JGI) 3300010608 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org; ruhl.ilona@gmail.com Ramunas Stepanauskas; Ilona Ruhl No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1071255 1083 1 0 1 0 SRX2750319 Unrestricted 0.0 Single_particle_sort 3300032801 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep1 HSBNCT.T11.300.1.L5 DOE Joint Genome Institute (JGI) 3300032801 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 11315992 10083 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300049416 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.F11 DOE Joint Genome Institute (JGI) 3300049416 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 4786182 5228 5 0 6 0 Unrestricted 0.0 Single_particle_sort 3300034486 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.SSM.Mag.03.I6 DOE Joint Genome Institute (JGI) 3300034486 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 7603793 5167 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020757 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera14 DOE Joint Genome Institute (JGI) 3300020757 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 6391817 6514 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036336 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.M10 DOE Joint Genome Institute (JGI) 3300036336 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 2772484 2946 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300033103 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep1 HSBNCT.N11.300.1.L4 DOE Joint Genome Institute (JGI) 3300033103 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2591360 2704 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036137 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_H6 DOE Joint Genome Institute (JGI) 3300036137 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 867404 924 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300036234 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_E9 DOE Joint Genome Institute (JGI) 3300036234 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 343377 402 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300046938 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment.pos_JMV.Tmarg.Fil1.2.L3 DOE Joint Genome Institute (JGI) 3300046938 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 9830801 10687 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300020821 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera67 DOE Joint Genome Institute (JGI) 3300020821 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 2721566 2851 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034313 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells T11 rep2 HSBNCT.T11.5000.01.I6 DOE Joint Genome Institute (JGI) 3300034313 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3919 5897281 5999 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300010669 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.E11.16S negative DOE Joint Genome Institute (JGI) 3300010669 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1167763 1421 0 0 0 0 SRX2750315 Unrestricted 0.0 Single_particle_sort 3300020760 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera57 DOE Joint Genome Institute (JGI) 3300020760 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7365655 7292 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300028686 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Superior, Ontario, Canada - control SU02.DCL DOE Joint Genome Institute (JGI) 3300028686 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Engineered Industrial production Sheath fluid Chemical products Unclassified sheath fluid 37.9313 -122.0217 3360668 5975 1 0 4 0 Unrestricted 42.34 Single_particle_sort 3300024152 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7061.QLV.BNCT.01.D9 DOE Joint Genome Institute (JGI) 3300024152 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 3101695 3462 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036235 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_F9 DOE Joint Genome Institute (JGI) 3300036235 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 147396 189 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300036245 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.K5 DOE Joint Genome Institute (JGI) 3300036245 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 3821148 3838 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300046948 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.H5 DOE Joint Genome Institute (JGI) 3300046948 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 16462879 16396 4 0 7 0 Unrestricted 0.0 Single_particle_sort 3300034856 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells SoilN RepB EcoBCT.SoilN.5000.1.H6 DOE Joint Genome Institute (JGI) 3300034856 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 16211353 16834 5 0 6 0 Unrestricted 0.0 Single_particle_sort 3300036244 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.K4 DOE Joint Genome Institute (JGI) 3300036244 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 1726923 1783 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034907 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_J3 DOE Joint Genome Institute (JGI) 3300034907 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 1746843 1716 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034509 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.PSCntrl.SYBR.02.I5 DOE Joint Genome Institute (JGI) 3300034509 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 1448600 1623 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300036190 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Santa Monica Basin, California, United States - ANME aggregate JGI_Orphan.7059.BNCT.2.K3 DOE Joint Genome Institute (JGI) 3300036190 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.7988 -118.6476 3847651 4284 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300033008 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep3 HSBNCT.N11.300.1.E15 DOE Joint Genome Institute (JGI) 3300033008 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2708444 2834 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034763 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Benguela upwelling system, South Atlantic Ocean - Beggiatoaceae JNN162YC_Rep1_CE DOE Joint Genome Institute (JGI) 3300034763 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -23.0 14.0692 1219244 1117 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300020630 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera15 DOE Joint Genome Institute (JGI) 3300020630 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 1902664 2187 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010028 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater treatment plant in Klosterneuburg, Austria - C35_LANv3 DOE Joint Genome Institute (JGI) 3300010028 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Active sludge 48.3 16.2 37139738 38599 9 0 19 0 SRX2165351 Unrestricted 0.0 Single_particle_sort 3300024021 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.C9 DOE Joint Genome Institute (JGI) 3300024021 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 6592944 7074 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034883 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells Plant RepC EcoBCT.Plant.5000.1.K4 DOE Joint Genome Institute (JGI) 3300034883 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 14883079 15833 6 0 10 0 Unrestricted 0.0 Single_particle_sort 3300033021 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep2 HSBNCT.N11.300.1.M9 DOE Joint Genome Institute (JGI) 3300033021 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3813240 4034 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034484 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.SSM.Mag.03.I4 DOE Joint Genome Institute (JGI) 3300034484 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 7803330 5203 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300024209 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.D6 DOE Joint Genome Institute (JGI) 3300024209 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 3352339 3903 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300020913 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera23 DOE Joint Genome Institute (JGI) 3300020913 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 8142605 8669 1 0 4 0 Unrestricted 0.0 Single_particle_sort 3300038897 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.1.2015 0410 MDM2 LHC4 sed p1 16S.H15.double-peak DOE Joint Genome Institute (JGI) 3300038897 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 379504 501 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300024008 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.C11 DOE Joint Genome Institute (JGI) 3300024008 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 3694598 4227 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300049415 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.H11 DOE Joint Genome Institute (JGI) 3300049415 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 8849882 10461 9 0 8 0 Unrestricted 0.0 Single_particle_sort 3300034485 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.SSM.Mag.03.I5 DOE Joint Genome Institute (JGI) 3300034485 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 8102978 5515 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010573 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.I11.16S negative DOE Joint Genome Institute (JGI) 3300010573 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 676106 900 0 0 0 0 SRX2749291 Unrestricted 0.0 Single_particle_sort 3300046951 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.F5 DOE Joint Genome Institute (JGI) 3300046951 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 14785484 14551 2 0 10 0 Unrestricted 0.0 Single_particle_sort 3300032973 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July02.5000.02.C3 DOE Joint Genome Institute (JGI) 3300032973 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 5941499 6031 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007581 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D73_LAv2 DOE Joint Genome Institute (JGI) 3300007581 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 58767006 58884 11 0 18 0 SRX2939922 Unrestricted 0.0 Single_particle_sort 3300028684 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Erie, Ohio, United States - control ER36 DOE Joint Genome Institute (JGI) 3300028684 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Engineered Industrial production Sheath fluid Chemical products Unclassified sheath fluid 37.9313 -122.0217 1498674 3800 1 0 3 0 Unrestricted 30.76 Single_particle_sort 3300034213 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep3 HSBNCT.FG11.300.03.J16 DOE Joint Genome Institute (JGI) 3300034213 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 7850862 7655 6 0 7 0 Unrestricted 0.0 Single_particle_sort 3300007494 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C30_HANv2 DOE Joint Genome Institute (JGI) 3300007494 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 48705343 50298 18 0 31 0 SRX2939890 Unrestricted 0.0 Single_particle_sort 3300036335 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.L7 DOE Joint Genome Institute (JGI) 3300036335 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 3310352 3585 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010499 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.J17.16S negative DOE Joint Genome Institute (JGI) 3300010499 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 341241 461 0 0 0 0 SRX2749580 Unrestricted 0.0 Single_particle_sort 3300028685 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Erie, Ontario, Canada - ER10.Small.C5 DOE Joint Genome Institute (JGI) 3300028685 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.68 -79.6916 11155351 24023 4 0 4 0 Unrestricted 101.91 Single_particle_sort 3300036236 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_H9 DOE Joint Genome Institute (JGI) 3300036236 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 29251 41 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300036334 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.L6 DOE Joint Genome Institute (JGI) 3300036334 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 2678855 2883 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007495 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C24_HANv2 DOE Joint Genome Institute (JGI) 3300007495 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 54349585 56411 16 0 29 0 SRX2939119 Unrestricted 0.0 Single_particle_sort 3300034337 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep3 HSBNCT.FG11.300.03.I16 DOE Joint Genome Institute (JGI) 3300034337 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 8359473 8375 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300038918 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.2.2015 0410 MDM2 LHC4sed p2 16S.F15.double-peak DOE Joint Genome Institute (JGI) 3300038918 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 791503 967 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010626 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.C6.16S negative DOE Joint Genome Institute (JGI) 3300010626 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1189671 1177 1 0 1 0 SRX2750488 Unrestricted 0.0 Single_particle_sort 3300034838 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - Total cells PlantN RepB EcoBCT.PlantN.5000.1.I6 DOE Joint Genome Institute (JGI) 3300034838 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 15515249 16458 5 0 6 0 Unrestricted 0.0 Single_particle_sort 3300007468 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C07_HANv2 DOE Joint Genome Institute (JGI) 3300007468 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 15416276 15725 8 0 8 0 SRX2939007 Unrestricted 0.0 Single_particle_sort 3300036678 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells T11 rep1 HSBNCT.T11.5000.01.F3 DOE Joint Genome Institute (JGI) 3300036678 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3919 3473176 3432 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020652 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera6 DOE Joint Genome Institute (JGI) 3300020652 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 7365763 7496 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300024025 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.F7 DOE Joint Genome Institute (JGI) 3300024025 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 7648213 8204 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300017793 *Microbiome Permanent Draft Marine microbial communities from the Costa Rica Dome and surrounding waters Marine microbial communities from the Costa Rica Dome - UW179A-orange mini metaG DOE Joint Genome Institute (JGI) 3300017793 Metagenome - Cell Enrichment MEGAHIT v. 1.0.6 Yes Yes msaito@whoi.edu Mak Saito No Environmental Aquatic Oceanic Marine Photic zone Seawater 0.8736 -97.0511 27708164 33691 24 0 48 1 SRX3376016 Unrestricted 293.35 Single_particle_sort 3300024024 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.H4 DOE Joint Genome Institute (JGI) 3300024024 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 6953272 7957 4 0 6 0 Unrestricted 0.0 Single_particle_sort 3300036113 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_E3 DOE Joint Genome Institute (JGI) 3300036113 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 402812 441 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300032762 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep3 HSBNCT.FGM.300.1.C15 DOE Joint Genome Institute (JGI) 3300032762 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 7741289 7285 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300020792 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera53 DOE Joint Genome Institute (JGI) 3300020792 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 10758379 10840 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300007409 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D22_HNv2 DOE Joint Genome Institute (JGI) 3300007409 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 1574130 1771 1 0 1 0 SRX2938485 Unrestricted 0.0 Single_particle_sort 3300017846 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-2_N3 DOE Joint Genome Institute (JGI) 3300017846 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 6.39 311650 401 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036241 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_H11 DOE Joint Genome Institute (JGI) 3300036241 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 220803 288 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300024140 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells of freshwater protists from Biology Centre CAS, Ceske Budejovice, Czech Republic - ZER3_1Amoeba_I19 DOE Joint Genome Institute (JGI) 3300024140 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Freshwater Unclassified enrichment culture 48.9774 14.4478 1141636 1916 0 1 0 2 Unrestricted 0.0 Single_particle_sort 3300021380 *Microbiome Finished Water metavirome from crystallizer in the solar salterns in Santa Pola Enriched hypersaline water viral communities from crystillizer pond CR30 in Solar Salterns, Santa Pola, Alicante, Spain - clone 3H9 Genome Express 3300021380 Metagenome - Cell Enrichment Seqman application of the Lasergene software (DNASTAR Corporation) released by JGI data releasing policy No Yes emnabouhajja@gmail.com Emna Bouhajja No Environmental Aquatic Salt crystallizer ponds Non-marine Saline and Alkaline Unclassified Hypersaline water 38.1922 -0.5918 1038 2 0 0 0 0 0.0 Single_particle_sort 3300020947 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera35 DOE Joint Genome Institute (JGI) 3300020947 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 13330593 13806 4 0 6 0 Unrestricted 0.0 Single_particle_sort 3300028681 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Michigan, Michigan, United States - control MI23.SRFL DOE Joint Genome Institute (JGI) 3300028681 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Engineered Industrial production Sheath fluid Chemical products Unclassified sheath fluid 37.9313 -122.0217 302886 941 1 0 0 0 Unrestricted 19.93 Single_particle_sort 3300047257 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_AV1_C3 DOE Joint Genome Institute (JGI) 3300047257 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 33204268 79348 15 0 37 0 Restricted 129.36 Single_particle_sort 3300021163 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States - 4hB_Boncat_minus DOE Joint Genome Institute (JGI) 3300021163 Metagenome - Cell Enrichment spades v. 3.10.1 Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 130231383 324795 191 0 324 0 Unrestricted 32.85 Single_particle_sort 3300007584 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C39_LANv2 DOE Joint Genome Institute (JGI) 3300007584 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 79399813 78200 20 0 39 0 SRX2944973 Unrestricted 0.0 Single_particle_sort 3300010589 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.N10.16S negative DOE Joint Genome Institute (JGI) 3300010589 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 775703 972 0 0 0 0 SRX2750801 Unrestricted 0.0 Single_particle_sort 3300033140 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep2 HSBNCT.N11.300.1.C8 DOE Joint Genome Institute (JGI) 3300033140 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3695988 3943 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300020826 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera72 DOE Joint Genome Institute (JGI) 3300020826 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 3274586 3465 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032989 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.Aug20.5000.01 .D3 DOE Joint Genome Institute (JGI) 3300032989 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 42802491 42046 17 0 26 0 Unrestricted 0.0 Single_particle_sort 3300047088 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.C8 DOE Joint Genome Institute (JGI) 3300047088 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 19712179 20353 6 0 8 0 Unrestricted 0.0 Single_particle_sort 3300017834 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells of marine protists from Biology Centre CAS, Ceske Budejovice, Czech Republic - MCH_20Endo_J9 DOE Joint Genome Institute (JGI) 3300017834 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Marine Unclassified lab culture 48.9774 14.4478 1229594 1202 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007491 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D39_HAv2 DOE Joint Genome Institute (JGI) 3300007491 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 40179278 40727 10 0 22 0 SRX2944971 Unrestricted 0.0 Single_particle_sort 3300010557 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.C5.16S negative DOE Joint Genome Institute (JGI) 3300010557 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 647815 810 0 0 0 0 SRX2748702 Unrestricted 0.0 Single_particle_sort 3300034290 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Benguela upwelling system, South Atlantic Ocean - Beggiatoaceae JNN162YC_Rep3_CE DOE Joint Genome Institute (JGI) 3300034290 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -23.0 14.0692 333958 284 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034879 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells Plant RepB EcoBCT.Plant.5000.1.H6 DOE Joint Genome Institute (JGI) 3300034879 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 5370362 5489 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010959 *Microbiome Permanent Draft Mouse host associated microbial communities from Vienna, Austria Mouse cecal microbial communities from Vienna, Austria - N-Acetylneuraminic and N-Acetylglucosamine D2O microcosms_June DOE Joint Genome Institute (JGI) 3300010959 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes romans@mit.edu Roman Stocker No Host-associated Mammals Large intestine Digestive system Cecum Mouse cecum 48.2 16.37 156239171 157852 56 0 63 0 SRX2954895 Unrestricted 0.0 Single_particle_sort 3300017835 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells of marine protists from Biology Centre CAS, Ceske Budejovice, Czech Republic - MCH_5Endo_L15 DOE Joint Genome Institute (JGI) 3300017835 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Marine Unclassified lab culture 48.9774 14.4478 1002617 1072 2 0 0 0 Unrestricted 0.0 Single_particle_sort 3300036331 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.K7 DOE Joint Genome Institute (JGI) 3300036331 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 9076827 9287 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032882 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July09.5000.02.D3 DOE Joint Genome Institute (JGI) 3300032882 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 21295567 22382 6 0 9 0 Unrestricted 0.0 Single_particle_sort 3300032957 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep3 HSBNCT.FGM.300.1.E15 DOE Joint Genome Institute (JGI) 3300032957 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 7079941 6554 3 0 5 0 Unrestricted 0.0 Single_particle_sort 3300009270 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsD11-p2 DOE Joint Genome Institute (JGI) 3300009270 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 2686642 3215 0 0 1 0 SRX3205146 Unrestricted 0.0 Single_particle_sort 3300032806 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July16.5000.01.D3 DOE Joint Genome Institute (JGI) 3300032806 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 36758440 38229 12 0 16 0 Unrestricted 0.0 Single_particle_sort 3300049411 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.E10 DOE Joint Genome Institute (JGI) 3300049411 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 16609688 18397 7 0 12 0 Unrestricted 0.0 Single_particle_sort 3300046955 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.J6 DOE Joint Genome Institute (JGI) 3300046955 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 20686874 21881 5 0 10 0 Unrestricted 0.0 Single_particle_sort 3300031384 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.CF.EtOH.1-dapi+.3 DOE Joint Genome Institute (JGI) 3300031384 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 13217614 13825 5 0 6 0 Unrestricted 0.0 Single_particle_sort 3300033024 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep2 HSBNCT.N11.300.1.M8 DOE Joint Genome Institute (JGI) 3300033024 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3045769 3136 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300047260 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_AV2_B3 DOE Joint Genome Institute (JGI) 3300047260 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 21713514 38467 15 0 27 0 Restricted 276.54 Single_particle_sort 3300034247 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep2 HSBNCT.FG11.300.03.L11 DOE Joint Genome Institute (JGI) 3300034247 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 7409963 7126 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036258 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Santa Monica Basin, California, United States - ANME aggregate JGI_Orphan.7059.BNCT.2.C8 DOE Joint Genome Institute (JGI) 3300036258 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.7988 -118.6476 2414987 2601 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300046954 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.G6 DOE Joint Genome Institute (JGI) 3300046954 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 16510514 16831 2 0 7 0 Unrestricted 0.0 Single_particle_sort 3300031385 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.CF.UnFx.1-dapi+.2 DOE Joint Genome Institute (JGI) 3300031385 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 8534321 8747 7 0 15 0 Unrestricted 0.0 Single_particle_sort 3300033025 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep2 HSBNCT.N11.300.1.D10 DOE Joint Genome Institute (JGI) 3300033025 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3833120 4092 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010560 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.B13.16S negative DOE Joint Genome Institute (JGI) 3300010560 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 763285 830 0 0 0 0 SRX2750999 Unrestricted 0.0 Single_particle_sort 3300020990 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera61 DOE Joint Genome Institute (JGI) 3300020990 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 7220496 7219 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300032960 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep1 HSBNCT.T11.300.1.N3 DOE Joint Genome Institute (JGI) 3300032960 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 11016136 9586 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300008022 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D80_L00N DOE Joint Genome Institute (JGI) 3300008022 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 1483346 1541 1 0 1 0 SRX2156188 Unrestricted 0.0 Single_particle_sort 3300010614 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.C19.16S negative DOE Joint Genome Institute (JGI) 3300010614 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1022505 1100 0 0 0 0 SRX2751762 Unrestricted 0.0 Single_particle_sort 3300017866 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-4_L3 DOE Joint Genome Institute (JGI) 3300017866 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 6.08 5069021 5298 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300024160 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.H12 DOE Joint Genome Institute (JGI) 3300024160 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 4503147 5274 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010476 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.G7.16S negative DOE Joint Genome Institute (JGI) 3300010476 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 300577 353 0 0 0 0 SRX2748733 Unrestricted 0.0 Single_particle_sort 3300020752 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera73 DOE Joint Genome Institute (JGI) 3300020752 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5537032 6036 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300031442 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.Vis6.EtOH.1-neg.1 DOE Joint Genome Institute (JGI) 3300031442 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 1761845 1808 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010615 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.H16.16S negative DOE Joint Genome Institute (JGI) 3300010615 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 847343 1110 0 0 0 0 SRX2749505 Unrestricted 0.0 Single_particle_sort 3300036261 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Santa Monica Basin, California, United States - ANME aggregate JGI_Orphan.7059.BNCT.2.I9 DOE Joint Genome Institute (JGI) 3300036261 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.7988 -118.6476 2819129 3070 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300049391 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.E5 DOE Joint Genome Institute (JGI) 3300049391 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 5775883 6085 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300036132 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_C6 DOE Joint Genome Institute (JGI) 3300036132 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 96567 118 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300028943 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Michigan, Michigan, United States - MI23.DCL.RED.C7 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028943 Metagenome - Cell Enrichment SPAdes v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.1333 -87.0 37340253 47560 12 0 13 0 Unrestricted 444.64 Single_particle_sort 3300007448 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D20_HAv2 DOE Joint Genome Institute (JGI) 3300007448 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 8562554 9248 1 0 3 0 SRX3202952 Unrestricted 0.0 Single_particle_sort 3300024157 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.D11 DOE Joint Genome Institute (JGI) 3300024157 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 3733134 4190 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300047240 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_HPG1_F3 DOE Joint Genome Institute (JGI) 3300047240 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 18969968 37460 7 0 38 0 Restricted 120.33 Single_particle_sort 3300034267 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep3 HSBNCT.FG11.300.03.I14 DOE Joint Genome Institute (JGI) 3300034267 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 8673033 8533 6 0 6 0 Unrestricted 0.0 Single_particle_sort 3300048664 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.karukerense.extraction.3 DOE Joint Genome Institute (JGI) 3300048664 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 27447664 28905 7 1 11 1 Unrestricted 0.0 Single_particle_sort 3300010540 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.B18.16S negative DOE Joint Genome Institute (JGI) 3300010540 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 621513 728 0 0 0 0 SRX2751560 Unrestricted 0.0 Single_particle_sort 3300036298 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.1.D8 DOE Joint Genome Institute (JGI) 3300036298 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 10994948 11744 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300009217 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsC09-p3 DOE Joint Genome Institute (JGI) 3300009217 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 298753 409 0 0 0 0 SRX3205387 Unrestricted 0.0 Single_particle_sort 3300032874 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.June20.5000.01.C5 DOE Joint Genome Institute (JGI) 3300032874 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 10103489 10417 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300032940 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep3 HSBNCT.T11.300.1.M13 DOE Joint Genome Institute (JGI) 3300032940 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 7992912 7163 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007378 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C01_wellA03 DOE Joint Genome Institute (JGI) 3300007378 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 785201 1021 0 0 1 0 SRX3200211 Unrestricted 0.0 Single_particle_sort 3300036229 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_E8 DOE Joint Genome Institute (JGI) 3300036229 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 625013 741 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300021038 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera55 DOE Joint Genome Institute (JGI) 3300021038 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 13845568 13637 7 0 6 0 Unrestricted 0.0 Single_particle_sort 3300033016 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep3 HSBNCT.N11.300.1.F13 DOE Joint Genome Institute (JGI) 3300033016 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3434681 3528 3 0 5 0 Unrestricted 0.0 Single_particle_sort 3300032997 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.Aug07.5000.01.C6 DOE Joint Genome Institute (JGI) 3300032997 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 5380693 5589 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300021143 *Microbiome Permanent Draft Investigating the Microbiome of Thiomargarita & Thiopilula Thiomargarita spp. associated microbial communities from marine sediment, the Benguela Current, Namibia - TSINGL University of Minnesota - Twin Cities 3300021143 Metagenome - Cell Enrichment Spades 3.10 released by JGI data releasing policy No Yes beverlyflood@mac.com Beverly Flood No Host-associated Microbial Unclassified Bacteria Unclassified marine sediment -23.0025 14.09916667 1620558 4879 0 0 3 0 0.0 Single_particle_sort 3300020967 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera28 DOE Joint Genome Institute (JGI) 3300020967 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 5739337 5607 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300010597 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.N20.16S negative DOE Joint Genome Institute (JGI) 3300010597 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 952560 1024 1 0 1 0 SRX2750464 Unrestricted 0.0 Single_particle_sort 3300034250 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep1 HSBNCT.FG11.300.03.F3 DOE Joint Genome Institute (JGI) 3300034250 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 718007 795 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300032528 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep1 HSBNCT.T11.300.1.M5 DOE Joint Genome Institute (JGI) 3300032528 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 10318296 8751 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300038873 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - PDU D8.8.MDM2 PDU D8 p8 16S.B14.double-seq DOE Joint Genome Institute (JGI) 3300038873 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 851002 1025 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007451 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C17_HNv2 DOE Joint Genome Institute (JGI) 3300007451 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 10470726 10595 3 0 4 0 SRX2935940 Unrestricted 0.0 Single_particle_sort 3300009222 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Santa Monica Basin, CA to study methane oxidation - BONCAT_CE_7061-Q-MDAF08 DOE Joint Genome Institute (JGI) 3300009222 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes hatzenpichler@caltech.edu, roland.hatzenpichler@montana.edu; vorphan@gps.caltech.edu Hatzenpichler, Roland Hatzenpichler; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 33.789 -119.2284 446611 562 0 0 0 0 SRX3204995 Unrestricted 0.0 Single_particle_sort 3300049394 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.J6 DOE Joint Genome Institute (JGI) 3300049394 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 28363112 30404 20 0 20 0 Unrestricted 0.0 Single_particle_sort 3300049395 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.H6 DOE Joint Genome Institute (JGI) 3300049395 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 13038056 14318 9 0 8 0 Unrestricted 0.0 Single_particle_sort 3300029801 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Superior, Ontario, Canada - control SU02.DCL (v2) (version 2) DOE Joint Genome Institute (JGI) 3300029801 Metagenome - Cell Enrichment SPAdes v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Engineered Industrial production Sheath fluid Chemical products Unclassified sheath fluid 37.9313 -122.0217 2716798 3488 1 0 1 0 Unrestricted 43.72 Single_particle_sort 3300021456 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States - 21hC_Boncat_plus DOE Joint Genome Institute (JGI) 3300021456 Metagenome - Cell Enrichment spades v. 3.11.1-check Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 65215027 198011 138 0 205 1 Unrestricted 33.2 Single_particle_sort 3300034920 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_F3 DOE Joint Genome Institute (JGI) 3300034920 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 3021861 3211 2 0 0 0 Unrestricted 0.0 Single_particle_sort 3300036265 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_D12 DOE Joint Genome Institute (JGI) 3300036265 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 77953 94 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010611 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.L9.16S negative DOE Joint Genome Institute (JGI) 3300010611 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 866499 1095 0 0 0 0 SRX2750802 Unrestricted 0.0 Single_particle_sort 3300032637 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep3 HSBNCT.T11.300.1.N13 DOE Joint Genome Institute (JGI) 3300032637 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 8430621 7737 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300046968 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.H7 DOE Joint Genome Institute (JGI) 3300046968 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 18160055 18499 2 0 8 0 Unrestricted 0.0 Single_particle_sort 3300010639 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.J12.16S negative DOE Joint Genome Institute (JGI) 3300010639 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 983450 1246 0 0 0 0 SRX2749360 Unrestricted 0.0 Single_particle_sort 3300032818 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep2 HSBNCT.FGM.300.1.F8 DOE Joint Genome Institute (JGI) 3300032818 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 4912162 4721 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034896 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - Total cells Soil RepB EcoBCT.Soil.5000.2.I5 DOE Joint Genome Institute (JGI) 3300034896 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 8820727 9771 6 0 8 0 Unrestricted 0.0 Single_particle_sort 3300036264 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.1.C4 DOE Joint Genome Institute (JGI) 3300036264 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 6822745 7132 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300024173 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.J9 DOE Joint Genome Institute (JGI) 3300024173 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 10172921 11081 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020878 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera3 DOE Joint Genome Institute (JGI) 3300020878 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5976024 6417 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010487 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.B12.16S negative DOE Joint Genome Institute (JGI) 3300010487 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 366276 421 0 0 0 0 SRX2750317 Unrestricted 0.0 Single_particle_sort 3300007455 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D06_HN DOE Joint Genome Institute (JGI) 3300007455 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 12479292 12116 3 0 2 0 SRX2932859 Unrestricted 0.0 Single_particle_sort 3300038906 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.2.2015 0410 MDM2 LHC4sed p2 16S.C5.double-peak DOE Joint Genome Institute (JGI) 3300038906 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 170446 217 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300007454 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C34_LAv2 DOE Joint Genome Institute (JGI) 3300007454 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 11339240 11282 5 0 4 0 SRX2937567 Unrestricted 0.0 Single_particle_sort 3300010459 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.H10.16S negative DOE Joint Genome Institute (JGI) 3300010459 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 233009 241 0 0 0 0 SRX2750270 Unrestricted 0.0 Single_particle_sort 3300034232 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep2 HSBNCT.FG11.300.03.N9 DOE Joint Genome Institute (JGI) 3300034232 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 9207437 8968 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300038889 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.1.2015 0410 MDM2 LHC4 sed p1 16S.J6.double-peak DOE Joint Genome Institute (JGI) 3300038889 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 277800 371 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300020839 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera21 DOE Joint Genome Institute (JGI) 3300020839 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 4348731 4734 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036714 *Microbiome Permanent Draft Soil microbial communities from Guangzhou, China Soil microbial communities from vegetable field near Guangzhou, China - SS South China University of Technology (SCUT) 3300036714 Metagenome - Cell Enrichment spades v. 3.13 No Yes liuliangting.c14@gmail.com liangting liu No Environmental Terrestrial Unclassified Soil Agricultural land soil 23.16 113.23 24502593 39862 6 0 16 0 0.0 Single_particle_sort 3300034323 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep1 HSBNCT.FG11.5000.02.E5 DOE Joint Genome Institute (JGI) 3300034323 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 6935658 6700 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300020932 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera78 DOE Joint Genome Institute (JGI) 3300020932 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 10272627 10529 5 0 7 0 Unrestricted 0.0 Single_particle_sort 3300034551 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.J3 DOE Joint Genome Institute (JGI) 3300034551 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1757282 1924 0 0 0 0 SRX8393332 Unrestricted 0.0 Single_particle_sort 3300010678 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.I9.16S negative DOE Joint Genome Institute (JGI) 3300010678 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1273041 1550 0 0 0 0 SRX2750701 Unrestricted 0.0 Single_particle_sort 3300032871 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July02.5000.02.C6 DOE Joint Genome Institute (JGI) 3300032871 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 7868949 8166 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300032859 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.June20.5000.01.D3 DOE Joint Genome Institute (JGI) 3300032859 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 21279085 22799 6 1 6 0 Unrestricted 0.0 Single_particle_sort 3300021454 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States - 21hB_Boncat_plus DOE Joint Genome Institute (JGI) 3300021454 Metagenome - Cell Enrichment spades v. 3.11.1-check Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 10822829 35127 31 0 40 0 Unrestricted 55.39 Single_particle_sort 3300033078 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep2 HSBNCT.N11.300.1.N9 DOE Joint Genome Institute (JGI) 3300033078 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2933649 3097 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034579 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.L3 DOE Joint Genome Institute (JGI) 3300034579 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 3213410 3348 2 0 3 0 SRX8394450 Unrestricted 0.0 Single_particle_sort 3300020942 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera88 DOE Joint Genome Institute (JGI) 3300020942 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 11411307 11949 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300047252 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_HPG3_E3 DOE Joint Genome Institute (JGI) 3300047252 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 31314290 63231 8 0 24 0 Restricted 115.81 Single_particle_sort 3300032952 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep2 HSBNCT.T11.300.1.C11 DOE Joint Genome Institute (JGI) 3300032952 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 4751859 4629 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300021455 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States - 21hB_Boncat_minus DOE Joint Genome Institute (JGI) 3300021455 Metagenome - Cell Enrichment spades v. 3.11.1-check Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 78087796 190984 141 0 206 0 Unrestricted 18.93 Single_particle_sort 3300028693 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Erie, Ohio, United States - ER36.Total.D7 DOE Joint Genome Institute (JGI) 3300028693 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 41.935 -81.4783 20601875 44280 11 0 19 0 Unrestricted 49.6 Single_particle_sort 3300032887 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July16.5000.01.C3 DOE Joint Genome Institute (JGI) 3300032887 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 4539472 4776 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007483 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D27_HAv2 DOE Joint Genome Institute (JGI) 3300007483 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 30454301 32169 8 0 15 0 SRX2939169 Unrestricted 0.0 Single_particle_sort 3300049396 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.G7 DOE Joint Genome Institute (JGI) 3300049396 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 22679020 26298 13 0 14 0 Unrestricted 0.0 Single_particle_sort 3300010552 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.D10.16S negative DOE Joint Genome Institute (JGI) 3300010552 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 758409 783 0 0 0 0 SRX2750273 Unrestricted 0.0 Single_particle_sort 3300020849 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera3 DOE Joint Genome Institute (JGI) 3300020849 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5123400 5120 0 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034242 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep3 HSBNCT.FG11.300.03.I15 DOE Joint Genome Institute (JGI) 3300034242 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 7939108 7390 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300024011 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.E4 DOE Joint Genome Institute (JGI) 3300024011 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 4842267 5306 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010471 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.I16.16S negative DOE Joint Genome Institute (JGI) 3300010471 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 218513 308 0 0 0 0 SRX2751232 Unrestricted 0.0 Single_particle_sort 3300036266 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_E12 DOE Joint Genome Institute (JGI) 3300036266 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 87745 119 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300017861 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-6_N3 DOE Joint Genome Institute (JGI) 3300017861 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 3011124 3196 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034493 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.SSM.Mag.03.J7 DOE Joint Genome Institute (JGI) 3300034493 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 8897501 5969 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300038905 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.2.2015 0410 MDM2 LHC4sed p2 16S.I5.double-peak DOE Joint Genome Institute (JGI) 3300038905 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 20054 28 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300020657 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera2 DOE Joint Genome Institute (JGI) 3300020657 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 8927558 8856 5 0 4 0 Unrestricted 0.0 Single_particle_sort 3300010708 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.K10.16S negative DOE Joint Genome Institute (JGI) 3300010708 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 2417256 2234 1 0 1 0 SRX2750805 Unrestricted 0.0 Single_particle_sort 3300034612 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.E3 DOE Joint Genome Institute (JGI) 3300034612 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1827945 1919 1 0 1 0 SRX8394781 Unrestricted 0.0 Single_particle_sort 3300034332 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep3 HSBNCT.FG11.5000.02.K6 DOE Joint Genome Institute (JGI) 3300034332 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 8764866 8229 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300007456 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D64_LAv2 DOE Joint Genome Institute (JGI) 3300007456 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 12598534 12115 2 0 4 0 SRX2939168 Unrestricted 0.0 Single_particle_sort 3300010649 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.H18.16S negative DOE Joint Genome Institute (JGI) 3300010649 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1333670 1317 1 0 1 0 SRX2751561 Unrestricted 0.0 Single_particle_sort 3300033039 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep2 HSBNCT.N11.300.1.L10 DOE Joint Genome Institute (JGI) 3300033039 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3704570 3938 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020923 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera46 DOE Joint Genome Institute (JGI) 3300020923 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 9895663 9535 1 0 3 0 Unrestricted 0.0 Single_particle_sort 3300038904 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.1.2015 0410 MDM2 LHC4 sed p1 16S.I16.double-seq DOE Joint Genome Institute (JGI) 3300038904 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 1797081 2043 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300033011 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep1 HSBNCT.N11.300.1.E4 DOE Joint Genome Institute (JGI) 3300033011 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2932395 3042 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300028702 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Michigan, Michigan, United States - MI23.SRF.RED.D7 DOE Joint Genome Institute (JGI) 3300028702 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.1333 -87.0 67472077 141611 27 0 42 0 Unrestricted 132.19 Single_particle_sort 3300020740 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera80 DOE Joint Genome Institute (JGI) 3300020740 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 4318449 4209 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300047203 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_HPG1_E3 DOE Joint Genome Institute (JGI) 3300047203 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 29016896 49026 19 0 24 0 Restricted 139.24 Single_particle_sort 3300020660 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera11 DOE Joint Genome Institute (JGI) 3300020660 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 9376941 9471 3 0 5 0 Unrestricted 0.0 Single_particle_sort 3300032767 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July30.5000.01.C3 DOE Joint Genome Institute (JGI) 3300032767 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 7983947 8196 3 0 6 0 Unrestricted 0.0 Single_particle_sort 3300020797 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera46 DOE Joint Genome Institute (JGI) 3300020797 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 11324557 11749 3 0 9 0 Unrestricted 0.0 Single_particle_sort 3300009742 *Microbiome Permanent Draft Marine eukaryotic communities from CALCOFI LINE 67, Pacific Ocean, that are photosynthetic Marine eukaryotic communities from CALCOFI LINE 67, Pacific Ocean - CN11_C50_N6_SortRC_1 DOE Joint Genome Institute (JGI) 3300009742 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes azworden@mbari.org Alexandra Worden No Environmental Aquatic Oceanic Marine Unclassified Marine 35.0728 -125.0502 10267719 10122 3 0 4 0 SRX2933124 Unrestricted 0.0 Single_particle_sort 3300010503 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.M13.16S negative DOE Joint Genome Institute (JGI) 3300010503 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 406453 490 0 0 0 0 SRX2749414 Unrestricted 0.0 Single_particle_sort 3300017898 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-7_L3 DOE Joint Genome Institute (JGI) 3300017898 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 25650791 25903 9 0 12 0 Unrestricted 0.0 Single_particle_sort 3300032903 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep2 HSBNCT.FGM.300.1.N11 DOE Joint Genome Institute (JGI) 3300032903 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 11817539 10943 1 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034223 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep1 HSBNCT.FG11.300.03.N4 DOE Joint Genome Institute (JGI) 3300034223 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 2765456 2867 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300038892 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.1.2015 0410 MDM2 LHC4 sed p1 16S.D21.double-peak DOE Joint Genome Institute (JGI) 3300038892 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 674918 897 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300024014 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from gastrointestinal tract of the lab mouse from Pacific Northwest National Laboratory (PNNL), Richland, Washington, United States - LIM_E_Vancomycin_Neg DOE Joint Genome Institute (JGI) 3300024014 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes aaron.wright@pnnl.gov; twoyke@lbl.gov Aaron Wright; Tanja Woyke No Host-associated Mammals Unclassified Digestive system Unclassified gastrointestinal tract 46.0 -119.0 6022984 5534 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300017865 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-6_E3 DOE Joint Genome Institute (JGI) 3300017865 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 2793874 3318 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300007479 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C26_HAv2 DOE Joint Genome Institute (JGI) 3300007479 Metagenome - Cell Enrichment spades v. 3.6.0 Nikos: made them private temporary due to Tanja;s request for quality control check No Yes wagner@microbial-ecology.net Michael Wagner Yes 28386012.0 Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 27768077 26873 9 0 15 0 SRX2164571 Unrestricted 0.0 Single_particle_sort 3300010474 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.E6.16S negative DOE Joint Genome Institute (JGI) 3300010474 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 262846 346 0 0 0 0 SRX2748718 Unrestricted 0.0 Single_particle_sort 3300024015 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from gastrointestinal tract of the lab mouse from Pacific Northwest National Laboratory (PNNL), Richland, Washington, United States - LIM_F_Vancomycin_Bulk DOE Joint Genome Institute (JGI) 3300024015 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov; aaron.wright@pnnl.gov Tanja Woyke; Aaron Wright No Host-associated Mammals Unclassified Digestive system Unclassified gastrointestinal tract 46.0 -119.0 5461193 5693 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300049408 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.D10 DOE Joint Genome Institute (JGI) 3300049408 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 14711091 16310 6 0 9 0 Unrestricted 0.0 Single_particle_sort 3300017864 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-2_C3 DOE Joint Genome Institute (JGI) 3300017864 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 6.39 3177360 3412 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034891 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells Soil RepA EcoBCT.Soil.5000.2.E6 DOE Joint Genome Institute (JGI) 3300034891 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 12971329 14667 9 0 8 0 Unrestricted 0.0 Single_particle_sort 3300010475 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.D9.16S negative DOE Joint Genome Institute (JGI) 3300010475 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 266039 349 0 0 0 0 SRX2750278 Unrestricted 0.0 Single_particle_sort 3300034583 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.M3 DOE Joint Genome Institute (JGI) 3300034583 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1020469 1096 0 0 0 0 SRX8394447 Unrestricted 0.0 Single_particle_sort 3300038928 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Sandy's Spring West, Nevada, USA - SSWsed.3.2015 0414 MDM2 SSWsed p3 16S.B22.double-peak DOE Joint Genome Institute (JGI) 3300038928 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 40.653 -119.3749 430808 518 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010616 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.C9.16S negative DOE Joint Genome Institute (JGI) 3300010616 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1001153 1111 0 0 0 0 SRX2748864 Unrestricted 0.0 Single_particle_sort 3300021451 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States - 21hA_Boncat_plus DOE Joint Genome Institute (JGI) 3300021451 Metagenome - Cell Enrichment spades v. 3.11.1-check Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 16835341 55274 49 0 83 0 Unrestricted 36.5 Single_particle_sort 3300032930 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep1 HSBNCT.FGM.300.1.N6 DOE Joint Genome Institute (JGI) 3300032930 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 13572236 11827 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300010530 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.B20.Thermi DOE Joint Genome Institute (JGI) 3300010530 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 520293 698 0 0 0 0 SRX2750454 Unrestricted 0.0 Single_particle_sort 3300036680 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells T11 rep3 HSBNCT.T11.5000.01.K3 DOE Joint Genome Institute (JGI) 3300036680 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3919 7266597 7745 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300019140 *Microbiome Finished Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India Lab enriched petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India - point GR3 UA Spades_77 Life Technologies 3300019140 Metagenome - Cell Enrichment SPAdes 3.10.1 released by JGI data releasing policy No Yes sarkar.jayeeta12@gmail.com Jayeeta Sarkar No Engineered Bioremediation Unclassified Hydrocarbon Unclassified petroleum sludge 26.18471 91.80725 230091896 436155 168 1 250 1 SRX2512231 0.0 Single_particle_sort 3300047230 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_AV2_E3 DOE Joint Genome Institute (JGI) 3300047230 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 28102556 53648 21 0 40 0 Restricted 128.99 Single_particle_sort 3300037381 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - BONCATsort_Cellobiose_rep_2_126201events_15pcr DOE Joint Genome Institute (JGI) 3300037381 Metagenome - Cell Enrichment metaspades v. 3.13.0 Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5326 -110.7972 13188608 37344 26 0 58 0 Unrestricted 105.14 Single_particle_sort 3300032876 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep1 HSBNCT.FGM.300.1.N5 DOE Joint Genome Institute (JGI) 3300032876 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 11376230 9276 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036329 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.K10 DOE Joint Genome Institute (JGI) 3300036329 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 6507289 6835 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300007438 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D38_HAv2 DOE Joint Genome Institute (JGI) 3300007438 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 6025957 5920 1 0 2 0 SRX2944974 Unrestricted 0.0 Single_particle_sort 3300034868 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells Plant RepA EcoBCT.Plant.5000.1.E3 DOE Joint Genome Institute (JGI) 3300034868 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 6219209 6313 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300028933 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Superior, Ontario, Canada - SU02.SRF.Total.B5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028933 Metagenome - Cell Enrichment SPAdes v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.3605 -85.6205 10166047 13005 4 0 5 0 Unrestricted 261.77 Single_particle_sort 3300036142 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_D8 DOE Joint Genome Institute (JGI) 3300036142 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 405583 458 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034367 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells T11 rep2 HSBNCT.T11.5000.01.H4 DOE Joint Genome Institute (JGI) 3300034367 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3919 6906621 7398 5 0 5 0 Unrestricted 0.0 Single_particle_sort 3300034902 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells Soil RepA EcoBCT.Soil.5000.2.E5 DOE Joint Genome Institute (JGI) 3300034902 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 12875774 14139 3 0 6 0 Unrestricted 0.0 Single_particle_sort 3300031432 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.CF.EtOH.1-fish+.3 DOE Joint Genome Institute (JGI) 3300031432 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 25025093 26150 9 0 12 0 Unrestricted 0.0 Single_particle_sort 3300033015 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep3 HSBNCT.N11.300.1.D15 DOE Joint Genome Institute (JGI) 3300033015 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 1705906 1820 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300038901 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.1.2015 0410 MDM2 LHC4 sed p1 16S.C6.double-seq DOE Joint Genome Institute (JGI) 3300038901 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 204730 246 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300031272 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.CF.UnFx.1-fish+.4 DOE Joint Genome Institute (JGI) 3300031272 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 11007794 11655 13 0 10 0 Unrestricted 0.0 Single_particle_sort 3300034809 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - Total cells Soil RepC EcoBCT.Soil.5000.2.L4 DOE Joint Genome Institute (JGI) 3300034809 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 9715192 10040 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300009200 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsG02-p3 DOE Joint Genome Institute (JGI) 3300009200 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 59058 97 0 0 0 0 SRX3205391 Unrestricted 0.0 Single_particle_sort 3300034350 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep1 HSBNCT.FG11.300.03.M5 DOE Joint Genome Institute (JGI) 3300034350 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 4213924 4118 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300033014 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep3 HSBNCT.N11.300.1.E13 DOE Joint Genome Institute (JGI) 3300033014 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3560511 3700 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300010546 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.D13.16S negative DOE Joint Genome Institute (JGI) 3300010546 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 610562 753 1 0 1 0 SRX2750334 Unrestricted 0.0 Single_particle_sort 3300007423 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D16_HANv2 DOE Joint Genome Institute (JGI) 3300007423 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 3222932 3262 2 0 2 0 SRX2938488 Unrestricted 0.0 Single_particle_sort 3300020661 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera62 DOE Joint Genome Institute (JGI) 3300020661 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 9722695 9674 5 0 6 0 Unrestricted 0.0 Single_particle_sort 3300009064 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsE01UF DOE Joint Genome Institute (JGI) 3300009064 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes hatzenpichler@caltech.edu, roland.hatzenpichler@montana.edu; vorphan@gps.caltech.edu Hatzenpichler, Roland Hatzenpichler; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 6251859 6649 1 0 2 0 SRX3204450 Unrestricted 0.0 Single_particle_sort 3300032946 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep3 HSBNCT.FGM.300.1.M14 DOE Joint Genome Institute (JGI) 3300032946 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 14400009 14399 7 0 8 0 Unrestricted 0.0 Single_particle_sort 3300047246 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_HPG2_E3 DOE Joint Genome Institute (JGI) 3300047246 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 29632341 57474 26 0 51 0 Restricted 148.22 Single_particle_sort 3300020956 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera8 DOE Joint Genome Institute (JGI) 3300020956 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 3929324 3939 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300003914 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis roots microbial communities from North Carolina, USA - Col MF nosort DOE Joint Genome Institute (JGI) 3300003914 Metagenome - Cell Enrichment SOAPdenovo,newbler,minimus2 v. Version 1.05: testing... 2010,(v2.8 (20120726_1306)),AMOS/3.1.0_1 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Unclassified Roots Unclassified Arabidopsis roots 35.9077 -79.0508 117927597 176348 5 9 4 10 SRX2770517, SRX2770518 Unrestricted 0.0 Single_particle_sort 3300009065 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-MDAH03UF DOE Joint Genome Institute (JGI) 3300009065 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes hatzenpichler@caltech.edu, roland.hatzenpichler@montana.edu; vorphan@gps.caltech.edu Hatzenpichler, Roland Hatzenpichler; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 11610888 12224 5 0 7 0 SRX3204480 Unrestricted 0.0 Single_particle_sort 3300007372 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C73_wellE06 DOE Joint Genome Institute (JGI) 3300007372 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 404671 514 0 0 0 0 SRX3200309 Unrestricted 0.0 Single_particle_sort 3300021032 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera80 DOE Joint Genome Institute (JGI) 3300021032 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 12405376 12369 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300020807 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera61 DOE Joint Genome Institute (JGI) 3300020807 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 14383174 14945 4 0 8 0 Unrestricted 0.0 Single_particle_sort 3300033010 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep1 HSBNCT.N11.300.1.L3 DOE Joint Genome Institute (JGI) 3300033010 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 1802904 2014 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020741 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera54 DOE Joint Genome Institute (JGI) 3300020741 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 4555280 4487 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300009204 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsD09-p3 DOE Joint Genome Institute (JGI) 3300009204 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 107608 172 0 0 0 0 SRX3205400 Unrestricted 0.0 Single_particle_sort 3300034256 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep2 HSBNCT.FG11.300.03.M11 DOE Joint Genome Institute (JGI) 3300034256 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 7491833 6924 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300004262 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from Chapel Hill, North Carolina, USA - Col Cl FACS (version 2) DOE Joint Genome Institute (JGI) 3300004262 Metagenome - Cell Enrichment MEGAHIT v. 0.2.0 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9077 -79.0508 121330 509 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300007578 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C48_LAv2 DOE Joint Genome Institute (JGI) 3300007578 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 58944151 58251 19 0 34 0 SRX2944527 Unrestricted 0.0 Single_particle_sort 3300046937 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment.pos_JMV.Tmarg.Fil1.2.N3 DOE Joint Genome Institute (JGI) 3300046937 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 18596708 19255 7 0 10 0 Unrestricted 0.0 Single_particle_sort 3300010470 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.K6.16S negative DOE Joint Genome Institute (JGI) 3300010470 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 216968 304 0 0 0 0 SRX2748719 Unrestricted 0.0 Single_particle_sort 3300020629 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera86 DOE Joint Genome Institute (JGI) 3300020629 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 17790635 17545 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300024166 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells of freshwater protists from Biology Centre CAS, Ceske Budejovice, Czech Republic - ZER3_50Endo4_M4 DOE Joint Genome Institute (JGI) 3300024166 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Freshwater Unclassified enrichment culture 48.9774 14.4478 8411415 7752 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300020983 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera26 DOE Joint Genome Institute (JGI) 3300020983 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 6880931 7010 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300038933 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Sandy's Spring West, Nevada, USA - SSWsed.3.2015 0414 MDM2 SSWsed p3 16S.E11.double-peak DOE Joint Genome Institute (JGI) 3300038933 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 40.653 -119.3749 448450 523 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300024010 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.J13 DOE Joint Genome Institute (JGI) 3300024010 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 3968680 4753 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300021199 *Microbiome Permanent Draft Freshwater microbial communities from Lake Union, Seattle, Washington, United States Enriched freshwater microbial communities from Lake Union, Seattle, Washington, United States - S1 UNIVERSITY OF WASHINGTON 3300021199 Metagenome - Cell Enrichment SOAPDENOVO Version 2.04 released by JGI data releasing policy No Yes qinwei2010@gmail.com wei qin No Environmental Aquatic Lake Freshwater Unclassified Freshwater 47.655278 -122.321375 23576194 35922 15 0 21 0 0.0 Single_particle_sort 3300007442 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C33_LNv2 DOE Joint Genome Institute (JGI) 3300007442 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 7163124 7175 0 0 1 0 SRX2944528 Unrestricted 0.0 Single_particle_sort 3300036138 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_D7 DOE Joint Genome Institute (JGI) 3300036138 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 89232 119 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300017860 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-3_D3 DOE Joint Genome Institute (JGI) 3300017860 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 3296742 3948 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010534 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.K10.16S negative DOE Joint Genome Institute (JGI) 3300010534 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 526196 709 0 0 0 0 SRX2749295 Unrestricted 0.0 Single_particle_sort 3300010607 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.G5.16S negative DOE Joint Genome Institute (JGI) 3300010607 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 867493 1082 0 0 0 0 SRX2750484 Unrestricted 0.0 Single_particle_sort 3300047235 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_AV3_E3 DOE Joint Genome Institute (JGI) 3300047235 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 27145708 50839 33 0 41 0 Restricted 109.27 Single_particle_sort 3300017889 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-4_J3 DOE Joint Genome Institute (JGI) 3300017889 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 6.08 6301619 6718 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300032609 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep1 HSBNCT.T11.300.1.M6 DOE Joint Genome Institute (JGI) 3300032609 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 11135533 9477 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020758 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera66 DOE Joint Genome Institute (JGI) 3300020758 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 6534103 6609 4 0 3 0 Unrestricted 0.0 Single_particle_sort 3300047234 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_AV3_C3 DOE Joint Genome Institute (JGI) 3300047234 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 22760498 40407 15 0 20 0 Restricted 122.05 Single_particle_sort 3300010535 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.I7.16S negative DOE Joint Genome Institute (JGI) 3300010535 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 587871 717 1 0 0 0 SRX2749673 Unrestricted 0.0 Single_particle_sort 3300036684 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells T11 rep3 HSBNCT.T11.5000.01.L6 DOE Joint Genome Institute (JGI) 3300036684 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3919 12700363 12492 4 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032935 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep1 HSBNCT.FGM.300.1.D3 DOE Joint Genome Institute (JGI) 3300032935 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 3975415 3605 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300008028 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D81_LN DOE Joint Genome Institute (JGI) 3300008028 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 4562837 4432 3 0 3 0 SRX2156185 Unrestricted 0.0 Single_particle_sort 3300017857 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-2_J3 DOE Joint Genome Institute (JGI) 3300017857 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 6.39 2684115 2942 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300038866 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - PDU D8.10.2014 1013 MDM2 PDU D8 p10 16S.M11.double-peak DOE Joint Genome Institute (JGI) 3300038866 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 360693 501 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036707 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep3 HSBNCT.FG11.5000.02.L4 DOE Joint Genome Institute (JGI) 3300036707 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 7996197 8535 4 0 3 0 Unrestricted 0.0 Single_particle_sort 3300033093 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep1 HSBNCT.N11.300.1.M5 DOE Joint Genome Institute (JGI) 3300033093 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2456691 2727 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020745 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera75 DOE Joint Genome Institute (JGI) 3300020745 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 4843379 5136 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010672 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.N19.16S negative DOE Joint Genome Institute (JGI) 3300010672 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1186397 1441 0 0 1 0 SRX2750452 Unrestricted 0.0 Single_particle_sort 3300020938 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera21 DOE Joint Genome Institute (JGI) 3300020938 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 11058467 11425 2 0 6 0 Unrestricted 0.0 Single_particle_sort 3300036183 *Microbiome Permanent Draft Marine microalgae viral communities from raceway pond in Palavas-les-Flots, France Enriched cells of marine microalgae from raceway pond in Palavas-les-Flots, France - 17.04.P3_hot MEGA virome DOE Joint Genome Institute (JGI) 3300036183 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes guillaume.blanc@mio.osupytheas.fr Guillaume Blanc No Host-associated Algae Unclassified Microalgae Unclassified marine microalgae 43.5198 3.9073 22802562 25086 9 0 10 0 Unrestricted 0.0 Single_particle_sort 3300009201 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Santa Monica Basin, CA to study methane oxidation - BONCAT_CE_7061-ConsH01 DOE Joint Genome Institute (JGI) 3300009201 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes hatzenpichler@caltech.edu, roland.hatzenpichler@montana.edu; vorphan@gps.caltech.edu Hatzenpichler, Roland Hatzenpichler; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 33.789 -119.2284 113687 123 0 0 0 0 SRX3204832 Unrestricted 0.0 Single_particle_sort 3300020744 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera51 DOE Joint Genome Institute (JGI) 3300020744 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5140488 5076 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300038900 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.1.2015 0410 MDM2 LHC4 sed p1 16S.H22.double-peak DOE Joint Genome Institute (JGI) 3300038900 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 997054 1191 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300007697 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C56_wellB05 DOE Joint Genome Institute (JGI) 3300007697 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 14794 18 0 0 0 0 SRX3201145 Unrestricted 0.0 Single_particle_sort 3300034238 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep3 HSBNCT.FG11.300.03.D13 DOE Joint Genome Institute (JGI) 3300034238 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 3680861 3313 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300020664 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera75 DOE Joint Genome Institute (JGI) 3300020664 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 10847617 10605 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300020665 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera43 DOE Joint Genome Institute (JGI) 3300020665 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 11158287 10771 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034799 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells Soil RepB EcoBCT.Soil.5000.2.H3 DOE Joint Genome Institute (JGI) 3300034799 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 7879261 8912 3 0 7 0 Unrestricted 0.0 Single_particle_sort 3300032919 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep2 HSBNCT.FGM.300.1.C10 DOE Joint Genome Institute (JGI) 3300032919 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 5651378 5527 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300007808 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C03_wellA01 DOE Joint Genome Institute (JGI) 3300007808 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 1451253 1841 0 0 0 0 SRX3200202 Unrestricted 0.0 Single_particle_sort 3300034847 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells SoilN RepA EcoBCT.SoilN.5000.1.E4 DOE Joint Genome Institute (JGI) 3300034847 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 12179470 13137 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300028904 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Erie, Ontario, Canada - ER10.Total.B5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028904 Metagenome - Cell Enrichment SPAdes v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 42.68 -79.6916 10538364 13617 2 0 4 0 Unrestricted 163.71 Single_particle_sort 3300020872 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera80 DOE Joint Genome Institute (JGI) 3300020872 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 6257092 6217 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300010531 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.F12.16S negative DOE Joint Genome Institute (JGI) 3300010531 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 601654 704 0 0 1 0 SRX2749355 Unrestricted 0.0 Single_particle_sort 3300021450 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States - 4hC_Boncat_plus DOE Joint Genome Institute (JGI) 3300021450 Metagenome - Cell Enrichment spades v. 3.11.1-check Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 15721159 50682 29 0 48 0 Unrestricted 64.41 Single_particle_sort 3300034926 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_L3 DOE Joint Genome Institute (JGI) 3300034926 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 1556712 1765 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034348 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep3 HSBNCT.FG11.300.03.I13 DOE Joint Genome Institute (JGI) 3300034348 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 8212807 8104 5 0 6 0 Unrestricted 0.0 Single_particle_sort 3300010519 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.B5.16S negative DOE Joint Genome Institute (JGI) 3300010519 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 461092 621 0 0 0 0 SRX2750217 Unrestricted 0.0 Single_particle_sort 3300031968 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs Polaribacter B1 DOE Joint Genome Institute (JGI) 3300031968 Metagenome - Cell Enrichment spades v. 3.12.0 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 1864654 2161 3 1 4 2 Unrestricted 0.0 Single_particle_sort 3300034542 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.D3 DOE Joint Genome Institute (JGI) 3300034542 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1448584 1583 1 0 1 0 SRX8392461 Unrestricted 0.0 Single_particle_sort 3300036681 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells T11 rep3 HSBNCT.T11.5000.01.K6 DOE Joint Genome Institute (JGI) 3300036681 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3919 14189724 13784 10 0 10 0 Unrestricted 0.0 Single_particle_sort 3300037380 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - BONCATsort_Glycine_rep_2_168669events_15pcr DOE Joint Genome Institute (JGI) 3300037380 Metagenome - Cell Enrichment metaspades v. 3.13.0 Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5326 -110.7972 10982428 30979 21 0 37 0 Unrestricted 55.13 Single_particle_sort 3300047231 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_AV3_B3 DOE Joint Genome Institute (JGI) 3300047231 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 20705769 37476 9 0 33 0 Restricted 219.29 Single_particle_sort 3300046962 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.I6 DOE Joint Genome Institute (JGI) 3300046962 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 25093598 25460 13 0 17 0 Unrestricted 0.0 Single_particle_sort 3300020979 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera2 DOE Joint Genome Institute (JGI) 3300020979 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 6610100 6769 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300047219 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_HPG3_G3 DOE Joint Genome Institute (JGI) 3300047219 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 38702196 81632 26 0 52 0 Restricted 60.71 Single_particle_sort 3300010463 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.B9.Thermi DOE Joint Genome Institute (JGI) 3300010463 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 205388 267 1 0 0 0 SRX2750709 Unrestricted 0.0 Single_particle_sort 3300020736 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera8 DOE Joint Genome Institute (JGI) 3300020736 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 2090196 2059 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300017873 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-3_C3 DOE Joint Genome Institute (JGI) 3300017873 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 6060694 6609 1 0 3 0 Unrestricted 0.0 Single_particle_sort 3300005474 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis roots microbial communities from North Carolina, USA - Arabidopsis Col CL FACS sort 2 DOE Joint Genome Institute (JGI) 3300005474 Metagenome - Cell Enrichment MEGAHIT v. 0.2.0 Yes Yes scott.yourstone81@gmail.com, scott.yourstone81@gmail.com; dangl@email.unc.edu Scott Yourstone, Scott Yourstone; Jeff Dangl No Host-associated Plants Unclassified Roots Unclassified Arabidopsis roots 35.9077 -79.0508 1821228 8276 5 0 22 0 SRX2834394 Unrestricted 0.0 Single_particle_sort 3300034890 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells Soil RepA EcoBCT.Soil.5000.2.E4 DOE Joint Genome Institute (JGI) 3300034890 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 11806778 12805 3 0 5 0 Unrestricted 0.0 Single_particle_sort 3300017892 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-4_K3 DOE Joint Genome Institute (JGI) 3300017892 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 6.08 7592801 8134 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300038865 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - PDU D8.10.2014 1013 MDM2 PDU D8 p10 16S.D22.double-peak DOE Joint Genome Institute (JGI) 3300038865 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 221546 272 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300020746 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera48 DOE Joint Genome Institute (JGI) 3300020746 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 5421096 5318 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300007450 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge DR05_HN DOE Joint Genome Institute (JGI) 3300007450 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 10107779 10582 3 0 3 0 SRX2929718 Unrestricted 0.0 Single_particle_sort 3300038864 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - PDU D8.10.2014 1013 MDM2 PDU D8 p10 16S.C9.double-peak DOE Joint Genome Institute (JGI) 3300038864 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 507936 529 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300047241 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_HPG1_E3 DOE Joint Genome Institute (JGI) 3300047241 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 13063947 20041 13 0 22 1 Restricted 284.97 Single_particle_sort 3300020951 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera30 DOE Joint Genome Institute (JGI) 3300020951 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 2496989 2570 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020666 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera37 DOE Joint Genome Institute (JGI) 3300020666 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 10850394 10846 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300024129 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells of freshwater protists from Biology Centre CAS, Ceske Budejovice, Czech Republic - JAMX8_1Endo3_L12 DOE Joint Genome Institute (JGI) 3300024129 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Freshwater Unclassified enrichment culture 48.9774 14.4478 284548 341 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010702 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.J18.16S negative DOE Joint Genome Institute (JGI) 3300010702 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1744535 2038 0 0 0 0 SRX2750445 Unrestricted 0.0 Single_particle_sort 3300032863 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep2 HSBNCT.T11.300.1.N9 DOE Joint Genome Institute (JGI) 3300032863 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 11170979 9909 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032941 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep2 HSBNCT.T11.300.1.D10 DOE Joint Genome Institute (JGI) 3300032941 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 3041070 2942 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300020893 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera27 DOE Joint Genome Institute (JGI) 3300020893 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7135673 7331 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300038917 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Sandy's Spring West, Nevada, USA - SSWsed.3.2015 0414 MDM2 SSWsed p3 16S.M18.double-peak DOE Joint Genome Institute (JGI) 3300038917 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 40.653 -119.3749 583688 699 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034837 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - Total cells PlantN RepB EcoBCT.PlantN.5000.1.I5 DOE Joint Genome Institute (JGI) 3300034837 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 10648532 11542 4 0 10 0 Unrestricted 0.0 Single_particle_sort 3300036677 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells T11 rep1 HSBNCT.T11.5000.01.E4 DOE Joint Genome Institute (JGI) 3300036677 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3919 9852599 9502 4 0 7 0 Unrestricted 0.0 Single_particle_sort 3300007467 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D28_HANv2 DOE Joint Genome Institute (JGI) 3300007467 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 14701842 15514 6 0 9 0 SRX2938483 Unrestricted 0.0 Single_particle_sort 3300010541 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.G15.16S negative DOE Joint Genome Institute (JGI) 3300010541 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 529960 731 0 0 0 0 SRX2749419 Unrestricted 0.0 Single_particle_sort 3300034925 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_K3 DOE Joint Genome Institute (JGI) 3300034925 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 2177509 2358 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300049390 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.G5 DOE Joint Genome Institute (JGI) 3300049390 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 10676671 11765 1 0 4 0 Unrestricted 0.0 Single_particle_sort 3300034924 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_J3 DOE Joint Genome Institute (JGI) 3300034924 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 1679013 1651 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300036257 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Santa Monica Basin, California, United States - ANME aggregate JGI_Orphan.7059.BNCT.2.C5 DOE Joint Genome Institute (JGI) 3300036257 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.7988 -118.6476 348216 413 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034248 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep2 HSBNCT.FG11.300.03.M8 DOE Joint Genome Institute (JGI) 3300034248 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 8719120 8129 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010558 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.C20.S2R-29 DOE Joint Genome Institute (JGI) 3300010558 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 769254 812 1 0 0 0 SRX2750453 Unrestricted 0.0 Single_particle_sort 3300032958 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep3 HSBNCT.FGM.300.1.M13 DOE Joint Genome Institute (JGI) 3300032958 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 13493069 11430 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300047258 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_AV1_E3 DOE Joint Genome Institute (JGI) 3300047258 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 33702796 79895 18 0 29 0 Restricted 138.21 Single_particle_sort 3300020948 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera30 DOE Joint Genome Institute (JGI) 3300020948 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 17485289 17772 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300010693 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.M16.16S negative DOE Joint Genome Institute (JGI) 3300010693 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1916855 1818 1 0 1 0 SRX2751556 Unrestricted 0.0 Single_particle_sort 3300024161 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.I10 DOE Joint Genome Institute (JGI) 3300024161 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 4959684 5594 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300047087 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.H8 DOE Joint Genome Institute (JGI) 3300047087 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 17305166 17629 4 0 10 0 Unrestricted 0.0 Single_particle_sort 3300036260 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Santa Monica Basin, California, United States - ANME aggregate JGI_Orphan.7059.BNCT.2.I6 DOE Joint Genome Institute (JGI) 3300036260 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.7988 -118.6476 2138533 2345 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032945 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep2 HSBNCT.T11.300.1.M8 DOE Joint Genome Institute (JGI) 3300032945 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 10552833 8678 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300023383 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities from Utah, United States - BONCAT_SYTO_Terrestrial_sediment - 2 DOE Joint Genome Institute (JGI) 3300023383 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 62359969 181874 66 0 109 0 Unrestricted 16.46 Single_particle_sort 3300021023 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera28 DOE Joint Genome Institute (JGI) 3300021023 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 10641587 10632 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010545 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.B15.16S negative DOE Joint Genome Institute (JGI) 3300010545 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 628822 747 0 0 0 0 SRX2751203 Unrestricted 0.0 Single_particle_sort 3300010027 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater treatment plant in Klosterneuburg, Austria - D04_HANv3 DOE Joint Genome Institute (JGI) 3300010027 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Active sludge 48.3 16.2 29234507 28941 10 0 19 0 SRX2165350 Unrestricted 0.0 Single_particle_sort 3300047244 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_HPG2_B3 DOE Joint Genome Institute (JGI) 3300047244 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 47877510 99914 32 0 57 0 Restricted 168.2 Single_particle_sort 3300020954 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera38 DOE Joint Genome Institute (JGI) 3300020954 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 3606656 3390 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300032944 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep2 HSBNCT.T11.300.1.L9 DOE Joint Genome Institute (JGI) 3300032944 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 10104071 8439 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300031438 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.Vis6.EtOH.1-dapi+.2 DOE Joint Genome Institute (JGI) 3300031438 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 15759805 16881 8 0 11 0 Unrestricted 0.0 Single_particle_sort 3300032870 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.June25.5000.01.C4 DOE Joint Genome Institute (JGI) 3300032870 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 13520475 13740 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300009066 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Santa Monica Basin, CA to study methane oxidation - BONCAT_CE_7061-ConsA12 DOE Joint Genome Institute (JGI) 3300009066 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes hatzenpichler@caltech.edu, roland.hatzenpichler@montana.edu; vorphan@gps.caltech.edu Hatzenpichler, Roland Hatzenpichler; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 33.789 -119.2284 1395025 1664 0 0 0 0 SRX3204795 Unrestricted 0.0 Single_particle_sort 3300020955 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera56 DOE Joint Genome Institute (JGI) 3300020955 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 3632255 4023 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300047245 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_HPG2_D3 DOE Joint Genome Institute (JGI) 3300047245 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 31013580 59298 31 0 48 0 Restricted 81.22 Single_particle_sort 3300034908 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_K3 DOE Joint Genome Institute (JGI) 3300034908 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 3732681 3852 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010544 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.M6.16S negative DOE Joint Genome Institute (JGI) 3300010544 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 600796 738 0 0 0 0 SRX2750229 Unrestricted 0.0 Single_particle_sort 3300033007 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep3 HSBNCT.N11.300.1.L15 DOE Joint Genome Institute (JGI) 3300033007 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3900749 4125 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300004084 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis roots microbial communities from North Carolina, USA - Col MF nosort (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300004084 Metagenome - Cell Enrichment MEGAHIT v. 0.2.0 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Unclassified Roots Unclassified Arabidopsis roots 35.9077 -79.0508 12852474 44870 8 3 32 17 SRX2770517, SRX2770518 Unrestricted 0.0 Single_particle_sort 3300022662 *Microbiome Permanent Draft Groundwater microbial community from Koyna-Warna region, Deccan traps, Phansavale, Maharashtra, India Lab enriched groundwater microbial community from Koyna-Warna region, Deccan traps, Phansavale, Maharashtra, India - S1 K127 Indian Institute of Technology, kharagpur 3300022662 Metagenome - Cell Enrichment Spades v. 3.10 released by JGI data releasing policy No Yes avishekdutta14@gmail.com Avishek Dutta No Environmental Aquatic Groundwater Freshwater Aquifer Groundwater 17.150283 73.667633 5203222 6356 3 0 8 0 0.0 Single_particle_sort 3300034254 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep3 HSBNCT.FG11.300.03.F16 DOE Joint Genome Institute (JGI) 3300034254 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 2512673 2181 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007432 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C21_HANv2 DOE Joint Genome Institute (JGI) 3300007432 Metagenome - Cell Enrichment spades v. 3.6.0 Nikos: made them private temporary due to Tanja;s request for quality control check No Yes wagner@microbial-ecology.net Michael Wagner Yes 28386012.0 Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 4542662 4805 2 0 3 0 SRX2156426 Unrestricted 0.0 Single_particle_sort 3300034862 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells SoilN RepC EcoBCT.SoilN.5000.1.K5 DOE Joint Genome Institute (JGI) 3300034862 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 8160781 7908 5 0 6 0 Unrestricted 0.0 Single_particle_sort 3300034255 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep1 HSBNCT.FG11.300.03.L5 DOE Joint Genome Institute (JGI) 3300034255 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 4847382 4677 3 0 1 0 Unrestricted 0.0 Single_particle_sort 3300046947 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.M5 DOE Joint Genome Institute (JGI) 3300046947 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 165840 155 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300031349 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.Vis6.UnFx.1-fish+.3 DOE Joint Genome Institute (JGI) 3300031349 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 4442330 4971 5 0 5 0 Unrestricted 0.0 Single_particle_sort 3300024165 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.J4 DOE Joint Genome Institute (JGI) 3300024165 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 6529150 7635 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010610 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.B16.16S negative DOE Joint Genome Institute (JGI) 3300010610 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 850463 1091 0 0 0 0 SRX2751210 Unrestricted 0.0 Single_particle_sort 3300007393 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C38_wellG02 DOE Joint Genome Institute (JGI) 3300007393 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 858123 1109 0 0 0 0 SRX3200782 Unrestricted 0.0 Single_particle_sort 3300032779 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.June25.5000.01.C7 DOE Joint Genome Institute (JGI) 3300032779 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 9153482 9510 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300024164 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.H11 DOE Joint Genome Institute (JGI) 3300024164 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 6671688 7562 1 0 3 0 Unrestricted 0.0 Single_particle_sort 3300036273 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_D14 DOE Joint Genome Institute (JGI) 3300036273 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 43535 49 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300021042 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera64 DOE Joint Genome Institute (JGI) 3300021042 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 14727018 14904 7 0 8 0 Unrestricted 0.0 Single_particle_sort 3300024007 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from gastrointestinal tract of the lab mouse from Pacific Northwest National Laboratory (PNNL), Richland, Washington, United States - LIM_F_Vancomycin_Pos DOE Joint Genome Institute (JGI) 3300024007 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes aaron.wright@pnnl.gov; twoyke@lbl.gov Aaron Wright; Tanja Woyke No Host-associated Mammals Unclassified Digestive system Unclassified gastrointestinal tract 46.0 -119.0 4441131 4535 4 0 3 0 Unrestricted 0.0 Single_particle_sort 3300038922 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.2.2015 0410 MDM2 LHC4sed p2 16S.J9.double-seq DOE Joint Genome Institute (JGI) 3300038922 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 2591465 2612 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300049402 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.I7 DOE Joint Genome Institute (JGI) 3300049402 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 19311649 22293 9 0 8 0 Unrestricted 0.0 Single_particle_sort 3300036686 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells N11 rep1 HSBNCT.N11.5000.01.E3 DOE Joint Genome Institute (JGI) 3300036686 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3921 5356662 5569 4 0 2 0 Unrestricted 0.0 Single_particle_sort 3300047236 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_AV3_G3 DOE Joint Genome Institute (JGI) 3300047236 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 28754210 53564 21 0 33 0 Restricted 165.47 Single_particle_sort 3300023980 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.H8 DOE Joint Genome Institute (JGI) 3300023980 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 1478242 1887 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300032936 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep1 HSBNCT.FGM.300.1.M6 DOE Joint Genome Institute (JGI) 3300032936 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 11246823 9376 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034921 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_G3 DOE Joint Genome Institute (JGI) 3300034921 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 1563385 1612 2 0 2 1 Unrestricted 0.0 Single_particle_sort 3300038898 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.1.2015 0410 MDM2 LHC4 sed p1 16S.F21.double-peak DOE Joint Genome Institute (JGI) 3300038898 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 1285966 1452 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010536 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.C12.16S negative DOE Joint Genome Institute (JGI) 3300010536 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 515027 717 0 0 0 0 SRX2750313 Unrestricted 0.0 Single_particle_sort 3300029800 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Michigan, Michigan, United States - control MI23.SRF (v2) (version 2) DOE Joint Genome Institute (JGI) 3300029800 Metagenome - Cell Enrichment SPAdes v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Engineered Industrial production Sheath fluid Chemical products Unclassified sheath fluid 37.9313 -122.0217 21114 28 1 0 0 0 Unrestricted 11.35 Single_particle_sort 3300034762 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Benguela upwelling system, South Atlantic Ocean - Ca. Maribeggiatoa JNN164GD_Rep2_CE DOE Joint Genome Institute (JGI) 3300034762 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu Barbara MacGregor No Environmental Aquatic Oceanic Marine Sediment sediment -23.0 14.0692 122881 107 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010448 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.G8.16S negative DOE Joint Genome Institute (JGI) 3300010448 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 77380 92 0 0 0 0 SRX2748784 Unrestricted 0.0 Single_particle_sort 3300007476 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C16_HNv2 DOE Joint Genome Institute (JGI) 3300007476 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 24125679 23691 14 0 18 0 SRX2939064 Unrestricted 0.0 Single_particle_sort 3300010619 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.F22.16S negative DOE Joint Genome Institute (JGI) 3300010619 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 894057 1126 0 0 0 0 SRX2749671 Unrestricted 0.0 Single_particle_sort 3300032838 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July30.5000.01.C4 DOE Joint Genome Institute (JGI) 3300032838 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 7316889 7414 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300028937 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Superior, Ontario, Canada - SU02.SRF.Total.D5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028937 Metagenome - Cell Enrichment SPAdes v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.3605 -85.6205 11197733 14351 6 0 5 0 Unrestricted 207.24 Single_particle_sort 3300033041 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep1 HSBNCT.N11.300.1.K6 DOE Joint Genome Institute (JGI) 3300033041 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2850778 3111 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300010631 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.M15.16S negative DOE Joint Genome Institute (JGI) 3300010631 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 932230 1205 0 0 0 0 SRX2750422 Unrestricted 0.0 Single_particle_sort 3300047128 *Microbiome Permanent Draft Freshwater fungal communities from various locations Enriched cells from freshwater from Herbarium Pond, Ann Arbor, Michigan, United States - PSC032 Chytrid MDA DOE Joint Genome Institute (JGI) 3300047128 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes tyjames@umich.edu Timothy Y. James No Environmental Aquatic Pond Freshwater Unclassified Freshwater 42.237816 -83.730109 46620670 56957 7 2 8 2 Restricted 0.0 Single_particle_sort 3300034212 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep3 HSBNCT.FG11.300.03.J15 DOE Joint Genome Institute (JGI) 3300034212 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 8775050 7972 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010451 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.F5.16S negative DOE Joint Genome Institute (JGI) 3300010451 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 67825 81 0 0 0 0 SRX2750222 Unrestricted 0.0 Single_particle_sort 3300034960 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - Total cells SoilN RepB EcoBCT.SoilN.5000.1.I4 DOE Joint Genome Institute (JGI) 3300034960 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 17369630 18736 3 0 9 0 Unrestricted 0.0 Single_particle_sort 3300021530 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from agricultural soil in Iowa, United States - IA12soil_GW_FP2(bulk) DOE Joint Genome Institute (JGI) 3300021530 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov; aaron.wright@pnnl.gov Tanja Woyke; Aaron Wright No Environmental Terrestrial Agricultural land Soil Unclassified soil 41.9167 -93.75 6204745 7264 2 0 5 0 Unrestricted 0.0 Single_particle_sort 3300034806 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells Soil RepC EcoBCT.Soil.5000.2.K3 DOE Joint Genome Institute (JGI) 3300034806 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 13222334 14166 9 0 11 0 Unrestricted 0.0 Single_particle_sort 3300036326 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.I5 DOE Joint Genome Institute (JGI) 3300036326 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 6172750 6672 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034882 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - Total cells Plant RepB EcoBCT.Plant.5000.1.I6 DOE Joint Genome Institute (JGI) 3300034882 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 8611414 9056 4 0 3 0 Unrestricted 0.0 Single_particle_sort 3300020912 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera8 DOE Joint Genome Institute (JGI) 3300020912 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 8331801 8623 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300036127 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_D5 DOE Joint Genome Institute (JGI) 3300036127 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 147728 188 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300036224 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.J3 DOE Joint Genome Institute (JGI) 3300036224 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 2048973 2248 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300032879 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.Aug13.5000.01.C6 DOE Joint Genome Institute (JGI) 3300032879 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 5620359 5806 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300020831 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera75 DOE Joint Genome Institute (JGI) 3300020831 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 3677518 3673 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034587 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.H3 DOE Joint Genome Institute (JGI) 3300034587 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 2609987 2722 1 0 1 0 SRX8394646 Unrestricted 0.0 Single_particle_sort 3300038881 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - PDU D8.9.MDM2 PDU D8 p9 16S.C7.double-seq DOE Joint Genome Institute (JGI) 3300038881 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 270027 310 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010572 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.G6.16S negative DOE Joint Genome Institute (JGI) 3300010572 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 888777 892 0 0 0 0 SRX2750230 Unrestricted 0.0 Single_particle_sort 3300020819 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera86 DOE Joint Genome Institute (JGI) 3300020819 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 1915657 1909 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032972 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.June25.5000.01.D4 DOE Joint Genome Institute (JGI) 3300032972 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 22158002 23546 4 0 8 0 Unrestricted 0.0 Single_particle_sort 3300036225 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.J5 DOE Joint Genome Institute (JGI) 3300036225 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 2286415 2365 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300036269 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_D13 DOE Joint Genome Institute (JGI) 3300036269 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 20646 29 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300024036 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from gastrointestinal tract of the lab mouse from Pacific Northwest National Laboratory (PNNL), Richland, Washington, United States - LIM_F_Water_Neg DOE Joint Genome Institute (JGI) 3300024036 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes aaron.wright@pnnl.gov; twoyke@lbl.gov Aaron Wright; Tanja Woyke No Host-associated Mammals Unclassified Digestive system Unclassified gastrointestinal tract 46.0 -119.0 35104185 40010 14 0 21 0 Unrestricted 0.0 Single_particle_sort 3300047207 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_HPG1_G3 DOE Joint Genome Institute (JGI) 3300047207 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 26403722 49540 20 0 32 0 Restricted 122.73 Single_particle_sort 3300032763 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep1 HSBNCT.T11.300.1.M3 DOE Joint Genome Institute (JGI) 3300032763 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 10202067 8900 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010635 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.B22.16S negative DOE Joint Genome Institute (JGI) 3300010635 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 981311 1233 0 0 0 0 SRX2751896 Unrestricted 0.0 Single_particle_sort 3300033045 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep1 HSBNCT.N11.300.1.E5 DOE Joint Genome Institute (JGI) 3300033045 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2712325 2892 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020793 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera64 DOE Joint Genome Institute (JGI) 3300020793 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 10816297 11030 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034370 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells N11 rep2 HSBNCT.N11.5000.01.H3 DOE Joint Genome Institute (JGI) 3300034370 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3921 6640055 7141 6 0 5 0 Unrestricted 0.0 Single_particle_sort 3300032907 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep1 HSBNCT.T11.300.1.L6 DOE Joint Genome Institute (JGI) 3300032907 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 11011794 9138 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034227 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep1 HSBNCT.FG11.300.03.L3 DOE Joint Genome Institute (JGI) 3300034227 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 3578792 3308 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010634 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.F6.16S negative DOE Joint Genome Institute (JGI) 3300010634 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1167521 1226 0 0 0 0 SRX2750228 Unrestricted 0.0 Single_particle_sort 3300010507 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.B17.16S negative DOE Joint Genome Institute (JGI) 3300010507 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 419451 502 0 0 1 0 SRX2750419 Unrestricted 0.0 Single_particle_sort 3300033044 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep1 HSBNCT.N11.300.1.N4 DOE Joint Genome Institute (JGI) 3300033044 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2810030 2982 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300043547 *Microbiome Permanent Draft Green algae associated microbial communities from Chlorella culture in University of Arizona, United States Enriched cells of Vampirovibrio chlorellavorus culture contaminated with Chlorella, University of Arizona, USA - Vampirovibrio chlorellavorus Vc_AZ 8_2 DOE Joint Genome Institute (JGI) 3300043547 Metagenome - Cell Enrichment metaspades v. 3.14.1 released based on JGI ITS Yes Yes jbrown@ag.arizona.edu Judith Brown No Engineered Lab culture Algae Culture media Contaminated lab culture 32.2308 -110.9534 272129064 348613 91 1 109 3 Unrestricted 122.05 Single_particle_sort 3300036208 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Santa Monica Basin, California, United States - ANME aggregate JGI_Orphan.7059.BNCT.2.N6 DOE Joint Genome Institute (JGI) 3300036208 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.7988 -118.6476 3213190 3300 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300039847 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - BONCATsort_N2_100%_rep_2_151724events_15pcr DOE Joint Genome Institute (JGI) 3300039847 Metagenome - Cell Enrichment metaspades v. 3.13.0 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5326 -110.7972 3773128 11045 9 0 15 0 Unrestricted 37.49 Single_particle_sort 3300032856 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep1 HSBNCT.FGM.300.1.E5 DOE Joint Genome Institute (JGI) 3300032856 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 5338835 5143 3 0 5 0 Unrestricted 0.0 Single_particle_sort 3300020653 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera31 DOE Joint Genome Institute (JGI) 3300020653 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 7773264 7713 2 0 6 0 Unrestricted 0.0 Single_particle_sort 3300049399 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.H7 DOE Joint Genome Institute (JGI) 3300049399 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 23356010 27092 12 0 13 0 Unrestricted 0.0 Single_particle_sort 3300020846 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera56 DOE Joint Genome Institute (JGI) 3300020846 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 4721583 4945 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300020927 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera66 DOE Joint Genome Institute (JGI) 3300020927 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 9261822 9631 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300038885 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - PDU D8.9.MDM2 PDU D8 p9 16S.J13.double-seq DOE Joint Genome Institute (JGI) 3300038885 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 668055 749 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020835 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera17 DOE Joint Genome Institute (JGI) 3300020835 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 4147925 4212 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007678 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C85_wellG06 DOE Joint Genome Institute (JGI) 3300007678 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 32751 58 0 0 0 0 SRX3202756 Unrestricted 0.0 Single_particle_sort 3300021018 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera72 DOE Joint Genome Institute (JGI) 3300021018 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 10578152 10091 3 0 1 0 Unrestricted 0.0 Single_particle_sort 3300024120 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.D8 DOE Joint Genome Institute (JGI) 3300024120 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 8517017 9163 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300036221 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.H3 DOE Joint Genome Institute (JGI) 3300036221 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 3599032 3658 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300009237 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsC05-p3 DOE Joint Genome Institute (JGI) 3300009237 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 866745 1175 0 0 0 0 SRX3205297 Unrestricted 0.0 Single_particle_sort 3300005128 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME C08B38 DOE Joint Genome Institute (JGI) 3300005128 Metagenome - Cell Enrichment spades v. 3.0.0 Nikos: made them private temporary due to Tanja;s request for quality control check No Yes wagner@microbial-ecology.net Michael Wagner Yes 28386012.0 Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 36490926 38318 13 0 14 0 SRX2482139 Unrestricted 0.0 Single_particle_sort 3300038884 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - PDU D8.9.MDM2 PDU D8 p9 16S.I11.double-seq DOE Joint Genome Institute (JGI) 3300038884 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 1642204 1666 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020834 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera55 DOE Joint Genome Institute (JGI) 3300020834 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 4449471 4196 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034497 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.SSM.Mag.03.N5 DOE Joint Genome Institute (JGI) 3300034497 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 9156011 6069 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010454 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.K9.16S negative DOE Joint Genome Institute (JGI) 3300010454 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 127825 156 0 0 0 0 SRX2748923 Unrestricted 0.0 Single_particle_sort 3300034440 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.E3 DOE Joint Genome Institute (JGI) 3300034440 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 1695576 1806 1 0 1 0 SRX8389181 Unrestricted 0.0 Single_particle_sort 3300007459 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C38_LANv2 DOE Joint Genome Institute (JGI) 3300007459 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 12680450 12916 5 0 7 0 SRX2937585 Unrestricted 0.0 Single_particle_sort 3300021162 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States - 4hC_Boncat_minus DOE Joint Genome Institute (JGI) 3300021162 Metagenome - Cell Enrichment spades v. 3.10.1 Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 87487021 239302 159 0 219 1 Unrestricted 16.48 Single_particle_sort 3300007487 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C18_HANv2 DOE Joint Genome Institute (JGI) 3300007487 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 33358709 37610 8 0 24 0 SRX2936043 Unrestricted 0.0 Single_particle_sort 3300010455 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.D18.16S negative DOE Joint Genome Institute (JGI) 3300010455 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 116213 161 0 0 0 0 SRX2749584 Unrestricted 0.0 Single_particle_sort 3300033036 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep1 HSBNCT.N11.300.1.D6 DOE Joint Genome Institute (JGI) 3300033036 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2575608 2698 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010646 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.D6.16S negative DOE Joint Genome Institute (JGI) 3300010646 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1299035 1307 0 0 0 0 SRX2750225 Unrestricted 0.0 Single_particle_sort 3300028697 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Erie, Ohio, United States - ER36.Total.B7 DOE Joint Genome Institute (JGI) 3300028697 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 41.935 -81.4783 26272387 57723 19 0 28 0 Unrestricted 272.59 Single_particle_sort 3300034327 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep1 HSBNCT.FG11.5000.02.F6 DOE Joint Genome Institute (JGI) 3300034327 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 10504504 10377 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300033046 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep2 HSBNCT.N11.300.1.D9 DOE Joint Genome Institute (JGI) 3300033046 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 4419969 4696 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034270 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep3 HSBNCT.FG11.300.03.E14 DOE Joint Genome Institute (JGI) 3300034270 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 2754650 2897 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010636 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.I9.16S negative DOE Joint Genome Institute (JGI) 3300010636 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 996606 1239 0 0 0 0 SRX2748930 Unrestricted 0.0 Single_particle_sort 3300034828 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - Total cells PlantN RepA EcoBCT.PlantN.5000.1.F4 DOE Joint Genome Institute (JGI) 3300034828 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 10389331 11572 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300031352 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.CF.UnFx.1-fish+.5 DOE Joint Genome Institute (JGI) 3300031352 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 10323542 11095 10 0 12 0 Unrestricted 0.0 Single_particle_sort 3300024035 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.G12 DOE Joint Genome Institute (JGI) 3300024035 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 19652419 21472 4 0 6 0 Unrestricted 0.0 Single_particle_sort 3300007471 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C04_HANv2 DOE Joint Genome Institute (JGI) 3300007471 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 20168450 19351 7 0 10 0 SRX2938999 Unrestricted 0.0 Single_particle_sort 3300024034 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.J3 DOE Joint Genome Institute (JGI) 3300024034 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 18359552 19790 2 0 5 0 Unrestricted 0.0 Single_particle_sort 3300032855 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep2 HSBNCT.FGM.300.1.M11 DOE Joint Genome Institute (JGI) 3300032855 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 13520267 11561 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300047210 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_HPG2_F3 DOE Joint Genome Institute (JGI) 3300047210 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 28175714 56914 13 0 65 0 Restricted 45.62 Single_particle_sort 3300010483 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.G22.16S negative DOE Joint Genome Institute (JGI) 3300010483 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 285567 391 0 0 0 0 SRX2750466 Unrestricted 0.0 Single_particle_sort 3300020844 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera53 DOE Joint Genome Institute (JGI) 3300020844 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 4748980 4915 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020970 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera88 DOE Joint Genome Institute (JGI) 3300020970 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 6189324 5920 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300021459 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States - 21hA_Boncat_minus DOE Joint Genome Institute (JGI) 3300021459 Metagenome - Cell Enrichment spades v. 3.11.1-check Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 96821935 285591 137 0 188 1 Unrestricted 17.81 Single_particle_sort 3300036308 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.1.M9 DOE Joint Genome Institute (JGI) 3300036308 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 6599746 6800 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010510 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.L4.16S negative DOE Joint Genome Institute (JGI) 3300010510 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 393993 526 0 0 0 0 SRX2750471 Unrestricted 0.0 Single_particle_sort 3300032854 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep2 HSBNCT.FGM.300.1.L11 DOE Joint Genome Institute (JGI) 3300032854 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 13380413 11938 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032910 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep1 HSBNCT.FGM.300.1.M3 DOE Joint Genome Institute (JGI) 3300032910 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 10966510 9186 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020845 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera26 DOE Joint Genome Institute (JGI) 3300020845 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 4728997 4943 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020836 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera4 DOE Joint Genome Institute (JGI) 3300020836 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 4280759 4224 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300007418 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D77_LAv2 DOE Joint Genome Institute (JGI) 3300007418 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 2734993 2773 2 0 2 0 SRX2944584 Unrestricted 0.0 Single_particle_sort 3300038886 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - PDU D8.9.MDM2 PDU D8 p9 16S.N21.double-seq DOE Joint Genome Institute (JGI) 3300038886 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 1863525 1795 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300006760 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C50_wellA05 DOE Joint Genome Institute (JGI) 3300006760 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 677509 832 0 0 0 0 SRX3200215 Unrestricted 0.0 Single_particle_sort 3300036321 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.E8 DOE Joint Genome Institute (JGI) 3300036321 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 3548541 3849 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036698 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells N11 rep3 HSBNCT.N11.5000.01.L4 DOE Joint Genome Institute (JGI) 3300036698 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3921 3910535 4310 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300023430 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities from Utah, United States - BONCAT_SYTO_Terrestrial_sediment - 15 DOE Joint Genome Institute (JGI) 3300023430 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 62698148 183579 119 0 176 0 Unrestricted 16.0 Single_particle_sort 3300038909 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.2.2015 0410 MDM2 LHC4sed p2 16S.B11.double-peak DOE Joint Genome Institute (JGI) 3300038909 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 2837146 2748 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010644 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.B12.Thermi DOE Joint Genome Institute (JGI) 3300010644 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 996890 1274 1 0 0 0 SRX2750902 Unrestricted 0.0 Single_particle_sort 3300033034 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep1 HSBNCT.N11.300.1.M3 DOE Joint Genome Institute (JGI) 3300033034 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3291474 3589 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300034801 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells Soil RepB EcoBCT.Soil.5000.2.H5 DOE Joint Genome Institute (JGI) 3300034801 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 6435185 6573 5 0 6 0 Unrestricted 0.0 Single_particle_sort 3300010645 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.M12.16S negative DOE Joint Genome Institute (JGI) 3300010645 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1048850 1285 0 0 0 0 SRX2750335 Unrestricted 0.0 Single_particle_sort 3300033035 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep1 HSBNCT.N11.300.1.C4 DOE Joint Genome Institute (JGI) 3300033035 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2333793 2525 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020772 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera79 DOE Joint Genome Institute (JGI) 3300020772 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7880193 8431 2 0 5 0 Unrestricted 0.0 Single_particle_sort 3300010456 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.E5.16S negative DOE Joint Genome Institute (JGI) 3300010456 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 124438 163 0 0 2 0 SRX2749672 Unrestricted 0.0 Single_particle_sort 3300010593 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.N19.16S negative DOE Joint Genome Institute (JGI) 3300010593 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 767815 1001 0 0 0 0 SRX2749599 Unrestricted 0.0 Single_particle_sort 3300017808 *Microbiome Permanent Draft Marine microbial communities from the Costa Rica Dome and surrounding waters Marine microbial communities from the Costa Rica Dome - UW69 mini metaG DOE Joint Genome Institute (JGI) 3300017808 Metagenome - Cell Enrichment MEGAHIT v. 1.0.6 Yes Yes msaito@whoi.edu Mak Saito No Environmental Aquatic Oceanic Marine Photic zone Seawater 0.8736 -97.0511 46707070 63455 53 3 120 5 SRX3375926 Unrestricted 243.68 Single_particle_sort 3300005106 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - Helgoland Island plankton_ULv995 DOE Joint Genome Institute (JGI) 3300005106 Metagenome - Cell Enrichment spades v. 3.0.0 No Yes hteeling@mpi-bremen.de Hanno Teeling No Environmental Aquatic Pelagic zone Marine Sediment Pelagic marine 54.181054 7.892828 870725 984 1 0 1 0 SRX2719551 Unrestricted 0.0 Single_particle_sort 3300021147 *Microbiome Permanent Draft Wastewater bioreactor cell enrichment communities from fuel cell cathode in Xiamen, China Wastewater bioreactor cell enrichment communities from fuel cell cathode in Xiamen, China - 2 Beijing Novogene Bioinformatics Technology Co., Ltd 3300021147 Metagenome - Cell Enrichment SOAPdenovo released by JGI data releasing policy No Yes yuezheng@uw.edu Yue Zheng No Engineered Bioreactor Cathode Microbial fuel cells/MFC Unclassified wastewater bioreactor 24.6099318 118.0649207 108152685 143892 62 2 82 7 0.0 Single_particle_sort 3300032993 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.Aug13.5000.01.C3 DOE Joint Genome Institute (JGI) 3300032993 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 3576805 3684 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020841 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera33 DOE Joint Genome Institute (JGI) 3300020841 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 4577939 4796 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020963 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera67 DOE Joint Genome Institute (JGI) 3300020963 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 5419845 5412 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300017880 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-6_C3 DOE Joint Genome Institute (JGI) 3300017880 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 3984558 4323 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300032851 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.Aug13.5000.01.D4 DOE Joint Genome Institute (JGI) 3300032851 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 40222428 39633 16 0 23 0 Unrestricted 0.0 Single_particle_sort 3300010658 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.D14.16S negative DOE Joint Genome Institute (JGI) 3300010658 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1081642 1345 0 0 0 0 SRX2750379 Unrestricted 0.0 Single_particle_sort 3300038877 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - PDU D8.8.MDM2 PDU D8 p8 16S.L19.double-seq DOE Joint Genome Institute (JGI) 3300038877 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 933409 1133 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300017869 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-6_F3 DOE Joint Genome Institute (JGI) 3300017869 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 2977890 3511 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034263 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep2 HSBNCT.FG11.300.03.G8 DOE Joint Genome Institute (JGI) 3300034263 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 1603324 1600 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300007475 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C49_LANv2 DOE Joint Genome Institute (JGI) 3300007475 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 20437265 21025 4 0 11 0 SRX2939885 Unrestricted 0.0 Single_particle_sort 3300024019 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.K3 DOE Joint Genome Institute (JGI) 3300024019 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 6461280 6673 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010479 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.N13.16S negative DOE Joint Genome Institute (JGI) 3300010479 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 277676 361 0 0 0 0 SRX2749415 Unrestricted 0.0 Single_particle_sort 3300031330 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.Vis6.UnFx.1-dapi+.2 DOE Joint Genome Institute (JGI) 3300031330 Metagenome - Cell Enrichment spades v. 3.10.1 Yes Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 6516721 1147130 385 0 649 4 Unrestricted 0.0 Single_particle_sort 3300020620 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera56 DOE Joint Genome Institute (JGI) 3300020620 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 9289471 9079 6 0 7 0 Unrestricted 0.0 Single_particle_sort 3300009213 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsB05-p2 DOE Joint Genome Institute (JGI) 3300009213 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 286873 365 0 0 0 0 SRX3205062 Unrestricted 0.0 Single_particle_sort 3300007474 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C45_LANv2 DOE Joint Genome Institute (JGI) 3300007474 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 19702205 20925 5 0 14 0 SRX2938348 Unrestricted 0.0 Single_particle_sort 3300024031 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.E8 DOE Joint Genome Institute (JGI) 3300024031 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 11593330 12935 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300033031 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep3 HSBNCT.FGM.300.1.N14 DOE Joint Genome Institute (JGI) 3300033031 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 13673122 12925 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034804 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - Total cells Soil RepB EcoBCT.Soil.5000.2.I4 DOE Joint Genome Institute (JGI) 3300034804 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 9638027 10658 4 0 7 0 Unrestricted 0.0 Single_particle_sort 3300010641 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.D20.16S negative DOE Joint Genome Institute (JGI) 3300010641 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1155835 1259 0 0 1 0 SRX2749604 Unrestricted 0.0 Single_particle_sort 3300033019 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep3 HSBNCT.N11.300.1.D14 DOE Joint Genome Institute (JGI) 3300033019 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2707907 2905 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032848 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep3 HSBNCT.FGM.300.1.L15 DOE Joint Genome Institute (JGI) 3300032848 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 11996517 11530 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300033102 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep1 HSBNCT.N11.300.1.E6 DOE Joint Genome Institute (JGI) 3300033102 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2322527 2468 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300041878 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Cand. Thiomargarita magnifica 67 DOE Joint Genome Institute (JGI) 3300041878 Metagenome - Cell Enrichment spades v. 3.14.1 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 14003008 13864 1 0 6 0 Unrestricted 0.0 Single_particle_sort 3300034805 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - Total cells Soil RepB EcoBCT.Soil.5000.2.I6 DOE Joint Genome Institute (JGI) 3300034805 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 10215940 11898 5 0 8 0 Unrestricted 0.0 Single_particle_sort 3300034632 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.C3 DOE Joint Genome Institute (JGI) 3300034632 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 1610887 1747 0 0 0 0 SRX8390599 Unrestricted 0.0 Single_particle_sort 3300034312 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells T11 rep2 HSBNCT.T11.5000.01.I3 DOE Joint Genome Institute (JGI) 3300034312 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3919 5171222 5381 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020858 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera51 DOE Joint Genome Institute (JGI) 3300020858 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5317584 5543 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300024153 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells of freshwater protists from Biology Centre CAS, Ceske Budejovice, Czech Republic - JAMX8_100Endo3_H3 DOE Joint Genome Institute (JGI) 3300024153 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Freshwater Unclassified enrichment culture 48.9774 14.4478 3021834 3471 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010438 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.L15.16S negative DOE Joint Genome Institute (JGI) 3300010438 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 39186 49 0 0 0 0 SRX2749503 Unrestricted 0.0 Single_particle_sort 3300036325 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.I3 DOE Joint Genome Institute (JGI) 3300036325 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 5397179 5721 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300036226 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.J6 DOE Joint Genome Institute (JGI) 3300036226 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 3024854 3046 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036324 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.H5 DOE Joint Genome Institute (JGI) 3300036324 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 4669539 5038 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300009209 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Santa Monica Basin, CA to study methane oxidation - BONCAT_CE_7061-MDAH04 DOE Joint Genome Institute (JGI) 3300009209 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes hatzenpichler@caltech.edu, roland.hatzenpichler@montana.edu; vorphan@gps.caltech.edu Hatzenpichler, Roland Hatzenpichler; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 33.789 -119.2284 218503 275 0 0 0 0 SRX3205052 Unrestricted 0.0 Single_particle_sort 3300032978 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep1 HSBNCT.FGM.300.1.C5 DOE Joint Genome Institute (JGI) 3300032978 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 4880864 4749 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034359 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Benguela upwelling system, South Atlantic Ocean - Ca. Maribeggiatoa JNN162YC_Rep3_CE DOE Joint Genome Institute (JGI) 3300034359 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -23.0 14.0692 6116279 6614 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300047079 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.L8 DOE Joint Genome Institute (JGI) 3300047079 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 10222909 11111 4 0 8 0 Unrestricted 0.0 Single_particle_sort 3300023431 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities from Utah, United States - BONCAT_SYTO_Terrestrial_sediment - 17 DOE Joint Genome Institute (JGI) 3300023431 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 109088865 310460 153 0 253 0 Unrestricted 12.48 Single_particle_sort 3300034800 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells Soil RepB EcoBCT.Soil.5000.2.H4 DOE Joint Genome Institute (JGI) 3300034800 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 7532210 8536 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300010578 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.D19.16S negative DOE Joint Genome Institute (JGI) 3300010578 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 697575 924 0 0 0 0 SRX2749602 Unrestricted 0.0 Single_particle_sort 3300031346 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.CF.EtOH.1-dapi+.5 DOE Joint Genome Institute (JGI) 3300031346 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 10192390 10814 6 0 7 0 Unrestricted 0.0 Single_particle_sort 3300020918 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera39 DOE Joint Genome Institute (JGI) 3300020918 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 8583951 8852 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300034888 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - NoTemplatControl Plant RepC EcoBCT.Plant.5000.1.J2 DOE Joint Genome Institute (JGI) 3300034888 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 1446388 1694 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300021536 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from gastrointestinal tract of the lab mouse from Pacific Northwest National Laboratory (PNNL), Richland, Washington, United States - LIM_E_Water_Neg DOE Joint Genome Institute (JGI) 3300021536 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes aaron.wright@pnnl.gov; twoyke@lbl.gov Aaron Wright; Tanja Woyke No Host-associated Mammals Unclassified Digestive system Unclassified gastrointestinal tract 46.0 -119.0 24829659 28919 11 0 15 0 Unrestricted 0.0 Single_particle_sort 3300036320 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.E7 DOE Joint Genome Institute (JGI) 3300036320 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 7401298 7799 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300036277 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_G15 DOE Joint Genome Institute (JGI) 3300036277 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 162492 185 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007397 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C63_wellC06 DOE Joint Genome Institute (JGI) 3300007397 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 1181905 1529 1 0 1 0 SRX3200263 Unrestricted 0.0 Single_particle_sort 3300006761 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C15_wellC01 DOE Joint Genome Institute (JGI) 3300006761 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 898429 1051 1 0 1 0 SRX3200259 Unrestricted 0.0 Single_particle_sort 3300034218 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep2 HSBNCT.FG11.300.03.N11 DOE Joint Genome Institute (JGI) 3300034218 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 4775655 4841 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300036689 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells N11 rep1 HSBNCT.N11.5000.01.E6 DOE Joint Genome Institute (JGI) 3300036689 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3921 7315560 7313 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300020971 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera41 DOE Joint Genome Institute (JGI) 3300020971 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 6321264 6120 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300047239 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_HPG1_D3 DOE Joint Genome Institute (JGI) 3300047239 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 23056274 43359 13 0 25 0 Restricted 184.32 Single_particle_sort 3300017885 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-6_G3 DOE Joint Genome Institute (JGI) 3300017885 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 5291195 5831 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032832 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep2 HSBNCT.FGM.300.1.M9 DOE Joint Genome Institute (JGI) 3300032832 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 12937041 10882 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300047211 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_HPG2_C3 DOE Joint Genome Institute (JGI) 3300047211 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 44140454 85233 32 0 60 0 Restricted 79.91 Single_particle_sort 3300032911 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.Aug20.5000.01 .C7 DOE Joint Genome Institute (JGI) 3300032911 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 12802661 12849 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300046943 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.K4 DOE Joint Genome Institute (JGI) 3300046943 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 1944246 2080 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010539 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.F10.16S negative DOE Joint Genome Institute (JGI) 3300010539 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 555807 724 0 0 0 0 SRX2749290 Unrestricted 0.0 Single_particle_sort 3300032939 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep3 HSBNCT.T11.300.1.H13 DOE Joint Genome Institute (JGI) 3300032939 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 3827167 3692 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300017884 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-7_I3 DOE Joint Genome Institute (JGI) 3300017884 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 30463351 30199 12 0 13 0 Unrestricted 0.0 Single_particle_sort 3300010511 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.F20.16S negative DOE Joint Genome Institute (JGI) 3300010511 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 426974 564 0 0 0 0 SRX2750457 Unrestricted 0.0 Single_particle_sort 3300010442 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.L13.16S negative DOE Joint Genome Institute (JGI) 3300010442 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 83296 106 0 0 0 0 SRX2749413 Unrestricted 0.0 Single_particle_sort 3300020625 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera82 DOE Joint Genome Institute (JGI) 3300020625 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 9230603 9197 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034768 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Bay of Concepcion, South Pacific Ocean - Ca. Thiomargarita JBCH1603RB5_Rep2_CE DOE Joint Genome Institute (JGI) 3300034768 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -36.51 -73.125 2707194 3374 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300021027 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera44 DOE Joint Genome Institute (JGI) 3300021027 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 10827144 11030 6 0 7 0 Unrestricted 0.0 Single_particle_sort 3300023387 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities from Utah, United States - BONCAT_SYTO_Terrestrial_sediment - 5 DOE Joint Genome Institute (JGI) 3300023387 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 113784721 292740 136 0 241 0 Unrestricted 17.0 Single_particle_sort 3300034271 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep3 HSBNCT.FG11.300.03.E15 DOE Joint Genome Institute (JGI) 3300034271 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 3614285 3840 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300007470 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C25_HAv2 DOE Joint Genome Institute (JGI) 3300007470 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 18131231 17540 4 0 7 0 SRX2936044 Unrestricted 0.0 Single_particle_sort 3300034431 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.M3 DOE Joint Genome Institute (JGI) 3300034431 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 4758646 4986 1 0 1 0 SRX8389156 Unrestricted 0.0 Single_particle_sort 3300020624 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera79 DOE Joint Genome Institute (JGI) 3300020624 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 9697346 9618 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300033003 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.June25.5000.01.C6 DOE Joint Genome Institute (JGI) 3300033003 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 6950347 7228 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032776 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July23.5000.01.D3 DOE Joint Genome Institute (JGI) 3300032776 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 37127783 37460 9 0 16 0 Unrestricted 0.0 Single_particle_sort 3300006765 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C56_wellB05 DOE Joint Genome Institute (JGI) 3300006765 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 1760560 2196 0 0 0 0 SRX3200237 Unrestricted 0.0 Single_particle_sort 3300010697 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.K16.16S negative DOE Joint Genome Institute (JGI) 3300010697 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1858627 1897 0 0 0 0 SRX2749507 Unrestricted 0.0 Single_particle_sort 3300047083 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from seawater in Basse-Terre, Guadeloupe - No.Template.Control.seawater_JMV.Tmarg.Fil1.2.L2 DOE Joint Genome Institute (JGI) 3300047083 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp seawater 16.2781 -61.5582 22340904 22425 7 0 11 0 Unrestricted 0.0 Single_particle_sort 3300020669 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera19 DOE Joint Genome Institute (JGI) 3300020669 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 12253428 12317 0 0 3 0 Unrestricted 0.0 Single_particle_sort 3300006764 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C55_wellB04 DOE Joint Genome Institute (JGI) 3300006764 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 1406224 1662 1 0 3 0 SRX3200234 Unrestricted 0.0 Single_particle_sort 3300020749 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera58 DOE Joint Genome Institute (JGI) 3300020749 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5528842 5901 1 0 3 0 Unrestricted 0.0 Single_particle_sort 3300010640 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.J5.16S negative DOE Joint Genome Institute (JGI) 3300010640 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1044943 1250 0 0 0 0 SRX2750481 Unrestricted 0.0 Single_particle_sort 3300033030 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep2 HSBNCT.N11.300.1.C9 DOE Joint Genome Institute (JGI) 3300033030 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2675516 3066 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300005122 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrospira DOME D10B30 DOE Joint Genome Institute (JGI) 3300005122 Metagenome - Cell Enrichment spades v. 3.0.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 6127285 6650 2 0 2 0 SRX2482154 Unrestricted 0.0 Single_particle_sort 3300032787 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep1 HSBNCT.T11.300.1.L4 DOE Joint Genome Institute (JGI) 3300032787 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 10242632 8668 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034446 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.PSCntrl.SYBR.02.L9 DOE Joint Genome Institute (JGI) 3300034446 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 1587530 1810 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300036253 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.N4 DOE Joint Genome Institute (JGI) 3300036253 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 6231214 7455 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007672 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C45_wellH03 DOE Joint Genome Institute (JGI) 3300007672 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 24668 43 0 0 0 0 SRX3202753 Unrestricted 0.0 Single_particle_sort 3300021012 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera33 DOE Joint Genome Institute (JGI) 3300021012 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 9369350 9529 3 0 7 0 Unrestricted 0.0 Single_particle_sort 3300036118 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_C5 DOE Joint Genome Institute (JGI) 3300036118 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 417839 459 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300017798 *Microbiome Permanent Draft Marine microbial communities from the Costa Rica Dome and surrounding waters Marine microbial communities from the Costa Rica Dome - UW106 mini metaG DOE Joint Genome Institute (JGI) 3300017798 Metagenome - Cell Enrichment MEGAHIT v. 1.0.6 Yes Yes msaito@whoi.edu Mak Saito No Environmental Aquatic Oceanic Marine Photic zone Seawater 0.8736 -97.0511 38808475 38592 36 0 74 0 SRX3375925 Unrestricted 189.13 Single_particle_sort 3300020621 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera83 DOE Joint Genome Institute (JGI) 3300020621 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 9062643 9082 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034833 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells PlantN RepB EcoBCT.PlantN.5000.1.H5 DOE Joint Genome Institute (JGI) 3300034833 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 9589184 10204 7 0 6 0 Unrestricted 0.0 Single_particle_sort 3300034434 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.J3 DOE Joint Genome Institute (JGI) 3300034434 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 2331416 2464 1 0 1 0 SRX8389161 Unrestricted 0.0 Single_particle_sort 3300044978 *Microbiome Permanent Draft Deep subseafloor coalbed microbial communities from Japanese EEZ, North Pacific Ocean Enriched cells of subseafloor coalbed in Japanese EEZ, North Pacific Ocean - Sorted_minimetagenome_CSP506582_6119.15R2.36.T2.MeAM.D6.95 DOE Joint Genome Institute (JGI) 3300044978 Metagenome - Cell Enrichment metaspades v. 3.14.1 released based on JGI ITS Yes Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Terrestrial Unclassified Deep subsurface Unclassified Subseafloor coal bed 41.1766 142.2005 3755006 7581 10 0 8 0 Unrestricted 2693.38 Single_particle_sort 3300007463 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C22_HAv2 DOE Joint Genome Institute (JGI) 3300007463 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 14242134 13421 7 0 7 0 SRX2939117 Unrestricted 0.0 Single_particle_sort 3300024030 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.H3 DOE Joint Genome Institute (JGI) 3300024030 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 11530331 12744 4 0 6 0 Unrestricted 0.0 Single_particle_sort 3300032867 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.June20.5000.01.C7 DOE Joint Genome Institute (JGI) 3300032867 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 22880807 23151 8 0 10 0 Unrestricted 0.0 Single_particle_sort 3300020897 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera50 DOE Joint Genome Institute (JGI) 3300020897 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7065024 7423 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300036202 *Microbiome Permanent Draft Marine microalgae viral communities from raceway pond in Palavas-les-Flots, France Enriched cells of marine microalgae from raceway pond in Palavas-les-Flots, France - 23.10.P4A MEGA virome DOE Joint Genome Institute (JGI) 3300036202 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes guillaume.blanc@mio.osupytheas.fr Guillaume Blanc No Host-associated Algae Unclassified Microalgae Unclassified marine microalgae 43.5198 3.9073 952531 1077 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020974 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera73 DOE Joint Genome Institute (JGI) 3300020974 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 6504424 6262 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300020840 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera10 DOE Joint Genome Institute (JGI) 3300020840 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 4643874 4753 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300047214 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_HPG3_B3 DOE Joint Genome Institute (JGI) 3300047214 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 39189621 83219 24 0 53 0 Restricted 62.99 Single_particle_sort 3300010515 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.E8.16S negative DOE Joint Genome Institute (JGI) 3300010515 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 454747 591 0 0 0 0 SRX2750259 Unrestricted 0.0 Single_particle_sort 3300020975 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera40 DOE Joint Genome Institute (JGI) 3300020975 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 6144869 6354 3 0 5 0 Unrestricted 0.0 Single_particle_sort 3300010514 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.E15.EM3 DOE Joint Genome Institute (JGI) 3300010514 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 476481 579 1 0 0 0 SRX2750397 Unrestricted 0.0 Single_particle_sort 3300032850 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep1 HSBNCT.T11.300.1.C6 DOE Joint Genome Institute (JGI) 3300032850 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 7547557 7976 3 0 5 0 Unrestricted 0.0 Single_particle_sort 3300017881 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-7_M3 DOE Joint Genome Institute (JGI) 3300017881 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 27933079 27803 12 0 13 0 Unrestricted 0.0 Single_particle_sort 3300047215 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_HPG3_D3 DOE Joint Genome Institute (JGI) 3300047215 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 40284431 84832 22 0 47 0 Restricted 65.9 Single_particle_sort 3300020778 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera56 DOE Joint Genome Institute (JGI) 3300020778 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 9244954 9106 3 0 5 0 Unrestricted 0.0 Single_particle_sort 3300006766 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C51_wellA06 DOE Joint Genome Institute (JGI) 3300006766 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 1889007 2254 0 0 1 0 SRX3200235 Unrestricted 0.0 Single_particle_sort 3300021463 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States - 4hA_Boncat_minus DOE Joint Genome Institute (JGI) 3300021463 Metagenome - Cell Enrichment spades v. 3.11.1-check Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 67837251 202445 158 0 262 1 Unrestricted 32.38 Single_particle_sort 3300007702 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C87_wellG04 DOE Joint Genome Institute (JGI) 3300007702 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 3972 6 0 0 0 0 SRX3202752 Unrestricted 0.0 Single_particle_sort 3300010467 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.F6.16S negative DOE Joint Genome Institute (JGI) 3300010467 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 229349 294 0 0 0 0 SRX2748714 Unrestricted 0.0 Single_particle_sort 3300018772 *Microbiome Finished Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India Lab enriched petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India - point GR3 UA Spades_127 Life Technologies 3300018772 Metagenome - Cell Enrichment SPAdes 3.10.1 released by JGI data releasing policy No Yes sarkar.jayeeta12@gmail.com Jayeeta Sarkar No Engineered Bioremediation Unclassified Hydrocarbon Unclassified petroleum sludge 26.18471 91.80725 221892679 401393 156 1 221 1 SRX2512231 0.0 Single_particle_sort 3300017877 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-3_F3 DOE Joint Genome Institute (JGI) 3300017877 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 7391236 8100 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300038880 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - PDU D8.9.MDM2 PDU D8 p9 16S.B20.double-peak DOE Joint Genome Institute (JGI) 3300038880 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 786722 954 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020830 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera92 DOE Joint Genome Institute (JGI) 3300020830 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 3764294 3606 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300036692 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells N11 rep2 HSBNCT.N11.5000.01.H4 DOE Joint Genome Institute (JGI) 3300036692 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3921 5027625 5349 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300021531 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from agricultural soil in Iowa, United States - IA12soil_B_GH6A(-) DOE Joint Genome Institute (JGI) 3300021531 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov; aaron.wright@pnnl.gov Tanja Woyke; Aaron Wright No Environmental Terrestrial Agricultural land Soil Unclassified soil 41.9167 -93.75 3491076 4364 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300038869 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - PDU D8.10.2014 1013 MDM2 PDU D8 p10 16S.N9.double-seq DOE Joint Genome Institute (JGI) 3300038869 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 705445 877 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034843 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - Total cells PlantN RepC EcoBCT.PlantN.5000.1.L3 DOE Joint Genome Institute (JGI) 3300034843 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 11551686 12579 6 0 10 0 Unrestricted 0.0 Single_particle_sort 3300034961 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - Total cells Plant RepB EcoBCT.Plant.5000.1.I3 DOE Joint Genome Institute (JGI) 3300034961 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 5705768 6286 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034444 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.PSCntrl.SYBR.02.K7 DOE Joint Genome Institute (JGI) 3300034444 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 1449246 1628 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010450 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.H8.16S negative DOE Joint Genome Institute (JGI) 3300010450 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 47257 60 0 0 0 0 SRX2750260 Unrestricted 0.0 Single_particle_sort 3300032513 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BChl from Trout Bog BchlTB.Aug20.5000.01 .C5 DOE Joint Genome Institute (JGI) 3300032513 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.0412 -89.6861 6691807 6740 3 0 5 0 Unrestricted 0.0 Single_particle_sort 3300007412 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D61_LNv2 DOE Joint Genome Institute (JGI) 3300007412 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 2100443 2212 1 0 1 0 SRX2939170 Unrestricted 0.0 Single_particle_sort 3300034445 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.PSCntrl.SYBR.02.J9 DOE Joint Genome Institute (JGI) 3300034445 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 1630426 1910 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300032771 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep1 HSBNCT.T11.300.1.N4 DOE Joint Genome Institute (JGI) 3300032771 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 11784938 10149 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300008758 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D21_HN DOE Joint Genome Institute (JGI) 3300008758 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 9134314 8802 1 0 1 0 SRX2156183 Unrestricted 0.0 Single_particle_sort 3300036302 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.1.H5 DOE Joint Genome Institute (JGI) 3300036302 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 6667367 6939 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300007693 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C15_wellC01 DOE Joint Genome Institute (JGI) 3300007693 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 11173 14 0 0 0 0 SRX3201144 Unrestricted 0.0 Single_particle_sort 3300034436 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.L3 DOE Joint Genome Institute (JGI) 3300034436 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 2300766 2439 1 0 1 0 SRX8389175 Unrestricted 0.0 Single_particle_sort 3300010630 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.M16.16S negative DOE Joint Genome Institute (JGI) 3300010630 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1127542 1201 0 0 0 0 SRX2749504 Unrestricted 0.0 Single_particle_sort 3300033040 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep1 HSBNCT.N11.300.1.M6 DOE Joint Genome Institute (JGI) 3300033040 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2327766 2512 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020739 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera67 DOE Joint Genome Institute (JGI) 3300020739 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 3594937 3618 2 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034929 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_B4 DOE Joint Genome Institute (JGI) 3300034929 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 186192 226 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010516 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.G8.16S negative DOE Joint Genome Institute (JGI) 3300010516 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 549166 594 0 0 0 0 SRX2750258 Unrestricted 0.0 Single_particle_sort 3300036703 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep2 HSBNCT.FG11.5000.02.H4 DOE Joint Genome Institute (JGI) 3300036703 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 6683040 6714 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300047216 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_HPG3_F3 DOE Joint Genome Institute (JGI) 3300047216 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 38414388 77545 27 1 41 0 Restricted 64.74 Single_particle_sort 3300036187 *Microbiome Permanent Draft Marine microalgae viral communities from raceway pond in Palavas-les-Flots, France Enriched cells of marine microalgae from raceway pond in Palavas-les-Flots, France - 11.09.P2 MEGA virome DOE Joint Genome Institute (JGI) 3300036187 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes guillaume.blanc@mio.osupytheas.fr Guillaume Blanc No Host-associated Algae Unclassified Microalgae Unclassified marine microalgae 43.5198 3.9073 10827708 13185 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300020976 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera49 DOE Joint Genome Institute (JGI) 3300020976 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 6355229 6344 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300021534 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from gastrointestinal tract of the lab mouse from Pacific Northwest National Laboratory (PNNL), Richland, Washington, United States - LIM_E_Vancomycin_Bulk DOE Joint Genome Institute (JGI) 3300021534 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov; aaron.wright@pnnl.gov Tanja Woyke; Aaron Wright No Host-associated Mammals Unclassified Digestive system Unclassified gastrointestinal tract 46.0 -119.0 6706233 6102 3 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034287 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Benguela upwelling system, South Atlantic Ocean - Ca. Marithioploca JNN162YH_Rep1_CE DOE Joint Genome Institute (JGI) 3300034287 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -23.0 14.0692 5952936 5991 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034964 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - Total cells Plant RepC EcoBCT.Plant.5000.1.L5 DOE Joint Genome Institute (JGI) 3300034964 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 8445448 8661 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010603 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.D7.Aquificae DOE Joint Genome Institute (JGI) 3300010603 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 844766 1074 0 0 0 0 SRX2750613 Unrestricted 0.0 Single_particle_sort 3300021535 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from gastrointestinal tract of the lab mouse from Pacific Northwest National Laboratory (PNNL), Richland, Washington, United States - LIM_E_Water_Bulk DOE Joint Genome Institute (JGI) 3300021535 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes aaron.wright@pnnl.gov; twoyke@lbl.gov Aaron Wright; Tanja Woyke No Host-associated Mammals Unclassified Digestive system Unclassified gastrointestinal tract 46.0 -119.0 28925228 33439 10 0 19 0 Unrestricted 0.0 Single_particle_sort 3300034259 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep1 HSBNCT.FG11.300.03.N3 DOE Joint Genome Institute (JGI) 3300034259 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 2885136 3031 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300017853 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-2_G3 DOE Joint Genome Institute (JGI) 3300017853 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 6.39 1981277 2246 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300031345 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.Vis6.UnFx.1-fish+.4 DOE Joint Genome Institute (JGI) 3300031345 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 4014309 4301 4 0 3 0 Unrestricted 0.0 Single_particle_sort 3300024121 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.G3 DOE Joint Genome Institute (JGI) 3300024121 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 11484860 12985 2 0 5 0 Unrestricted 0.0 Single_particle_sort 3300032547 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BChl from Trout Bog BchlTB.July23.5000.01.C4 DOE Joint Genome Institute (JGI) 3300032547 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone Freshwater 46.0412 -89.6861 11232071 11374 4 0 6 0 Unrestricted 0.0 Single_particle_sort 3300032949 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep3 HSBNCT.T11.300.1.G15 DOE Joint Genome Institute (JGI) 3300032949 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 3830415 4045 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300036220 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.G9 DOE Joint Genome Institute (JGI) 3300036220 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 1319723 1422 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300046933 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment.pos_JMV.Tmarg.Fil1.2.M3 DOE Joint Genome Institute (JGI) 3300046933 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 14391280 14423 3 0 7 0 Unrestricted 0.0 Single_particle_sort 3300010549 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.N21.16S negative DOE Joint Genome Institute (JGI) 3300010549 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 591759 771 0 0 0 0 SRX2751893 Unrestricted 0.0 Single_particle_sort 3300034318 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells N11 rep2 HSBNCT.N11.5000.01.H6 DOE Joint Genome Institute (JGI) 3300034318 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3921 5503623 5873 4 0 8 0 Unrestricted 0.0 Single_particle_sort 3300020852 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera16 DOE Joint Genome Institute (JGI) 3300020852 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5305002 5296 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020987 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera31 DOE Joint Genome Institute (JGI) 3300020987 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 7380496 7194 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300038937 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Sandy's Spring West, Nevada, USA - SSWsed.3.2015 0414 MDM2 SSWsed p3 16S.G15.double-peak DOE Joint Genome Institute (JGI) 3300038937 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 40.653 -119.3749 349068 420 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300049388 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.L4 DOE Joint Genome Institute (JGI) 3300049388 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 10614687 11776 6 0 15 0 Unrestricted 0.0 Single_particle_sort 3300041872 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Cand. Thiomargarita magnifica 57 DOE Joint Genome Institute (JGI) 3300041872 Metagenome - Cell Enrichment spades v. 3.14.1 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 9516879 9301 0 0 4 0 Unrestricted 0.0 Single_particle_sort 3300034512 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.PSCntrl.SYBR.02.L5 DOE Joint Genome Institute (JGI) 3300034512 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 1623839 1862 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300032842 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July02.5000.02.C5 DOE Joint Genome Institute (JGI) 3300032842 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 6087223 6125 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020959 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera91 DOE Joint Genome Institute (JGI) 3300020959 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 4800604 4889 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300047249 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_HPG3_D3 DOE Joint Genome Institute (JGI) 3300047249 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 34030585 72089 17 0 34 0 Restricted 84.68 Single_particle_sort 3300017886 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-3_G3 DOE Joint Genome Institute (JGI) 3300017886 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 5558998 5757 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300020803 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera57 DOE Joint Genome Institute (JGI) 3300020803 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 12136778 12501 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300024108 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.J5 DOE Joint Genome Institute (JGI) 3300024108 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 2791310 3176 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300024212 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells of freshwater protists from Biology Centre CAS, Ceske Budejovice, Czech Republic - ZER3_1Amoeba_K21 DOE Joint Genome Institute (JGI) 3300024212 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Freshwater Unclassified enrichment culture 48.9774 14.4478 4856182 7536 0 1 0 1 Unrestricted 0.0 Single_particle_sort 3300007427 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D29_HNv2 DOE Joint Genome Institute (JGI) 3300007427 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 3093642 3400 3 0 4 0 SRX2944524 Unrestricted 0.0 Single_particle_sort 3300014197 *Microbiome Permanent Draft Hot spring freshwater microbial communities from Bubbling Pool near Salton Sea, California Hot spring water microbial communities from Bubbling Pool at Salton Sea, CA, USA - mini-metagenomic Stanford University 3300014197 Metagenome - Cell Enrichment SPAdes v10.0; Megahit released by JGI data releasing policy No Yes brian.yu@czbiohub.or Brian Yu No Environmental Aquatic Hot (42-90C) Thermal springs Neutral hot spring water 33.218933 -115.600308 6.73 158350616 165790 49 0 57 0 0.0 Single_particle_sort 3300032774 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep1 HSBNCT.T11.300.1.D4 DOE Joint Genome Institute (JGI) 3300032774 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 7416738 7619 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300010652 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.J9.16S negative DOE Joint Genome Institute (JGI) 3300010652 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1019836 1326 0 0 0 0 SRX2750799 Unrestricted 0.0 Single_particle_sort 3300031336 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.CF.EtOH.1-fish+.5 DOE Joint Genome Institute (JGI) 3300031336 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 35300476 36389 14 0 23 0 Unrestricted 0.0 Single_particle_sort 3300020626 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera84 DOE Joint Genome Institute (JGI) 3300020626 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 9931916 9955 5 0 5 0 Unrestricted 0.0 Single_particle_sort 3300024169 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells of freshwater protists from Biology Centre CAS, Ceske Budejovice, Czech Republic - ZER3_100Endo4_M3 DOE Joint Genome Institute (JGI) 3300024169 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Freshwater Unclassified enrichment culture 48.9774 14.4478 8874190 8052 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300032775 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.July23.5000.01.C3 DOE Joint Genome Institute (JGI) 3300032775 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 10356840 10359 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300034371 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells N11 rep3 HSBNCT.N11.5000.01.K3 DOE Joint Genome Institute (JGI) 3300034371 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3921 4020483 4216 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300017802 *Microbiome Permanent Draft Marine microbial communities from the Costa Rica Dome and surrounding waters Marine microbial communities from the Costa Rica Dome - N26 B7-2 mini metaG DOE Joint Genome Institute (JGI) 3300017802 Metagenome - Cell Enrichment MEGAHIT v. 1.0.6 Yes Yes msaito@whoi.edu Mak Saito No Environmental Aquatic Oceanic Marine Photic zone Seawater 0.8736 -97.0511 42125583 48462 33 2 44 2 SRX3375719 Unrestricted 0.0 Single_particle_sort 3300047051 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.J5 DOE Joint Genome Institute (JGI) 3300047051 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 33533871 34193 10 0 19 0 Unrestricted 0.0 Single_particle_sort 3300020999 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera36 DOE Joint Genome Institute (JGI) 3300020999 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 7692820 7726 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300032969 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep2 HSBNCT.T11.300.1.C10 DOE Joint Genome Institute (JGI) 3300032969 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 4713853 4324 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300021183 *Microbiome Permanent Draft Investigating the Microbiome of Thiomargarita & Thiopilula Thiomargarita spp. associated microbial communities from marine sediment, the Benguela Current, Namibia - ENDO002 University of Minnesota - Twin Cities 3300021183 Metagenome - Cell Enrichment Spades 3.10 released per PI No Yes beverlyflood@mac.com Beverly Flood No Host-associated Microbial Unclassified Bacteria Unclassified marine sediment -23.0025 14.09916667 884916753 1852626 139 3 311 8 0.0 Single_particle_sort 3300020928 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera59 DOE Joint Genome Institute (JGI) 3300020928 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 9648226 9958 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300010569 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.I6.16S negative DOE Joint Genome Institute (JGI) 3300010569 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 693531 865 0 0 0 0 SRX2750616 Unrestricted 0.0 Single_particle_sort 3300010703 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.M19.16S negative DOE Joint Genome Institute (JGI) 3300010703 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 2143516 2088 0 0 0 0 SRX2751761 Unrestricted 0.0 Single_particle_sort 3300032862 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep3 HSBNCT.T11.300.1.G14 DOE Joint Genome Institute (JGI) 3300032862 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 2742731 2977 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020892 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera84 DOE Joint Genome Institute (JGI) 3300020892 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7157425 7322 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300036207 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Santa Monica Basin, California, United States - ANME aggregate JGI_Orphan.7059.BNCT.2.N5 DOE Joint Genome Institute (JGI) 3300036207 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.7988 -118.6476 283961 324 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300039848 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - BONCATsort_Glycine_rep_3_24968events_18pcr DOE Joint Genome Institute (JGI) 3300039848 Metagenome - Cell Enrichment metaspades v. 3.13.0 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5326 -110.7972 9129268 17855 12 0 14 0 Unrestricted 95.36 Single_particle_sort 3300007565 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C68_wellD05 DOE Joint Genome Institute (JGI) 3300007565 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 3137 2 0 0 0 0 SRX3201639 Unrestricted 0.0 Single_particle_sort 3300047269 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_AV3_E3 DOE Joint Genome Institute (JGI) 3300047269 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 18768439 34276 25 0 35 0 Restricted 155.27 Single_particle_sort 3300031266 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.Vis6.EtOH.1-fish+.5 DOE Joint Genome Institute (JGI) 3300031266 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 6256726 6774 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300032908 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep2 HSBNCT.T11.300.1.D8 DOE Joint Genome Institute (JGI) 3300032908 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 5657904 5538 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034228 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep1 HSBNCT.FG11.300.03.L4 DOE Joint Genome Institute (JGI) 3300034228 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 1858152 1735 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036310 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.1.N5 DOE Joint Genome Institute (JGI) 3300036310 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 2640600 2757 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010508 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.H7.16S negative DOE Joint Genome Institute (JGI) 3300010508 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 394340 516 0 0 0 0 SRX2748734 Unrestricted 0.0 Single_particle_sort 3300034299 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Bay of Concepcion, South Pacific Ocean - Ca. Marithioploca JBCH16032A2_Rep1_CE DOE Joint Genome Institute (JGI) 3300034299 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -36.51 -73.125 21968 30 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034870 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells Plant RepA EcoBCT.Plant.5000.1.E5 DOE Joint Genome Institute (JGI) 3300034870 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 10190260 11721 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300017893 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-4_M3 DOE Joint Genome Institute (JGI) 3300017893 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 6.08 6954055 7297 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300010950 *Microbiome Permanent Draft Mouse host associated microbial communities from Vienna, Austria Mouse cecal microbial communities from Vienna, Austria - N-Acetylglucosamine amended with D2O_GlcNAcF DOE Joint Genome Institute (JGI) 3300010950 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes romans@mit.edu Roman Stocker No Host-associated Mammals Large intestine Digestive system Cecum Mouse cecum 48.2 16.37 2234164 2390 0 0 1 0 SRX2954894 Unrestricted 0.0 Single_particle_sort 3300032980 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep1 HSBNCT.T11.300.1.N5 DOE Joint Genome Institute (JGI) 3300032980 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 10906111 9343 1 0 3 0 Unrestricted 0.0 Single_particle_sort 3300047208 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_HPG2_B3 DOE Joint Genome Institute (JGI) 3300047208 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 27530639 51751 17 1 47 0 Restricted 89.73 Single_particle_sort 3300010580 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.C13.16S negative DOE Joint Genome Institute (JGI) 3300010580 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 686964 931 0 0 0 0 SRX2749361 Unrestricted 0.0 Single_particle_sort 3300007488 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from wastewater in Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D40_HAv2 DOE Joint Genome Institute (JGI) 3300007488 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 38959490 39343 6 0 9 0 SRX2944525 Unrestricted 0.0 Single_particle_sort 3300031406 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.CF.UnFx.1-dapi+.5 DOE Joint Genome Institute (JGI) 3300031406 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 5876413 6514 9 0 10 0 Unrestricted 0.0 Single_particle_sort 3300010521 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.B18.16S negative DOE Joint Genome Institute (JGI) 3300010521 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 572524 624 0 0 0 0 SRX2750431 Unrestricted 0.0 Single_particle_sort 3300034201 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep1 HSBNCT.FG11.300.03.D3 DOE Joint Genome Institute (JGI) 3300034201 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 1331029 1490 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300032921 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep3 HSBNCT.FGM.300.1.D13 DOE Joint Genome Institute (JGI) 3300032921 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 7132140 6943 3 1 4 0 Unrestricted 0.0 Single_particle_sort 3300034936 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_J4 DOE Joint Genome Institute (JGI) 3300034936 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 64464 92 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300028698 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Superior, Ontario, Canada - SU02.DCL.Total.B7 DOE Joint Genome Institute (JGI) 3300028698 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.3605 -85.6205 25354361 57140 10 0 13 0 Unrestricted 184.55 Single_particle_sort 3300024149 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.G12 DOE Joint Genome Institute (JGI) 3300024149 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 2767347 3155 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300007400 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C57_wellB06 DOE Joint Genome Institute (JGI) 3300007400 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 758922 1001 0 0 1 0 SRX3200257 Unrestricted 0.0 Single_particle_sort 3300047221 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_AV1_D3 DOE Joint Genome Institute (JGI) 3300047221 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 38343522 91153 25 0 82 0 Restricted 101.78 Single_particle_sort 3300010692 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.H16.16S negative DOE Joint Genome Institute (JGI) 3300010692 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1850651 1811 0 0 0 0 SRX2750421 Unrestricted 0.0 Single_particle_sort 3300031971 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs Polaribacter B2 DOE Joint Genome Institute (JGI) 3300031971 Metagenome - Cell Enrichment spades v. 3.12.0 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 60358 65 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300021156 *Microbiome Permanent Draft Investigating the Microbiome of Thiomargarita & Thiopilula Thiomargarita spp. associated microbial communities from marine sediment, the Benguela Current, Namibia - TCHAIN001 University of Minnesota - Twin Cities 3300021156 Metagenome - Cell Enrichment Spades 3.10 released by JGI data releasing policy No Yes beverlyflood@mac.com Beverly Flood No Host-associated Microbial Unclassified Bacteria Unclassified marine sediment -23.0025 14.09916667 122368664 208895 21 0 27 0 0.0 Single_particle_sort 3300020901 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera82 DOE Joint Genome Institute (JGI) 3300020901 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7355371 7654 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300005127 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME DR13B43 DOE Joint Genome Institute (JGI) 3300005127 Metagenome - Cell Enrichment spades v. 3.0.0 Nikos: made them private temporary due to Tanja;s request for quality control check No Yes wagner@microbial-ecology.net Michael Wagner Yes 28386012.0 Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 28654930 29987 10 0 11 0 SRX2482523 Unrestricted 0.0 Single_particle_sort 3300007710 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C38_wellG02 DOE Joint Genome Institute (JGI) 3300007710 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 29366 67 0 0 0 0 SRX3202760 Unrestricted 0.0 Single_particle_sort 3300034429 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Octopus Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Octo06.RedA.3.G3 DOE Joint Genome Institute (JGI) 3300034429 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5361 -110.797 2201950 2323 1 0 1 0 SRX8389158 Unrestricted 0.0 Single_particle_sort 3300034498 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.SSM.Mag.03.N6 DOE Joint Genome Institute (JGI) 3300034498 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 8342837 5688 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020614 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera48 DOE Joint Genome Institute (JGI) 3300020614 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 5684436 5855 2 0 6 0 Unrestricted 0.0 Single_particle_sort 3300007677 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C57_wellB06 DOE Joint Genome Institute (JGI) 3300007677 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 10154 19 0 0 0 0 SRX3201141 Unrestricted 0.0 Single_particle_sort 3300021017 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera68 DOE Joint Genome Institute (JGI) 3300021017 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 9764713 10437 3 0 7 0 Unrestricted 0.0 Single_particle_sort 3300020615 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera69 DOE Joint Genome Institute (JGI) 3300020615 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 5308877 5290 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300009238 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsD03-p3 DOE Joint Genome Institute (JGI) 3300009238 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 905585 1212 0 0 0 0 SRX3205388 Unrestricted 0.0 Single_particle_sort 3300024116 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.G7 DOE Joint Genome Institute (JGI) 3300024116 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 6972263 7787 4 0 2 0 Unrestricted 0.0 Single_particle_sort 3300032837 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.Aug07.5000.01.D4 DOE Joint Genome Institute (JGI) 3300032837 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 38317813 38113 12 0 12 0 Unrestricted 0.0 Single_particle_sort 3300007433 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D71_L0v2 DOE Joint Genome Institute (JGI) 3300007433 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 4980042 4816 1 0 2 0 SRX2939204 Unrestricted 0.0 Single_particle_sort 3300018672 *Microbiome Finished Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India Lab enriched petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India - point GR3 UA Spades_99 Life Technologies 3300018672 Metagenome - Cell Enrichment SPAdes 3.10.1 released by JGI data releasing policy No Yes sarkar.jayeeta12@gmail.com Jayeeta Sarkar No Engineered Bioremediation Unclassified Hydrocarbon Unclassified petroleum sludge 26.18471 91.80725 131487560 237347 108 0 161 0 SRX2512231 0.0 Single_particle_sort 3300034863 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells SoilN RepC EcoBCT.SoilN.5000.1.K6 DOE Joint Genome Institute (JGI) 3300034863 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 16177930 16393 6 0 7 0 Unrestricted 0.0 Single_particle_sort 3300028938 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Superior, Ontario, Canada - SU02.DCL.Total.B7 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028938 Metagenome - Cell Enrichment SPAdes v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.3605 -85.6205 11461951 14762 2 0 4 0 Unrestricted 382.72 Single_particle_sort 3300041881 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Cand. Thiomargarita magnifica 75 DOE Joint Genome Institute (JGI) 3300041881 Metagenome - Cell Enrichment spades v. 3.14.1 released based on JGI ITS No Yes jvolland@lbl.gov; twoyke@lbl.gov Jean-Marie Volland; Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 13549556 13161 1 0 5 0 Unrestricted 0.0 Single_particle_sort 3300014379 *Microbiome Finished Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India Lab enriched petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India - point GR3 UA 63 Life Technologies 3300014379 Metagenome - Cell Enrichment MetaVelvet v1.2.01 released by JGI data releasing policy No Yes sarkar.jayeeta12@gmail.com Jayeeta Sarkar No Engineered Bioremediation Unclassified Hydrocarbon Unclassified petroleum sludge 26.18471 91.80725 312518499 1265796 1036 3 1663 16 SRX2512231 0.0 Single_particle_sort 3300010490 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.D17.16S negative DOE Joint Genome Institute (JGI) 3300010490 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 302249 427 0 0 0 0 SRX2749501 Unrestricted 0.0 Single_particle_sort 3300017810 *Microbiome Permanent Draft Marine microbial communities from the Costa Rica Dome and surrounding waters Marine microbial communities from the Costa Rica Dome - N26 A3-2 mini metaG DOE Joint Genome Institute (JGI) 3300017810 Metagenome - Cell Enrichment MEGAHIT v. 1.0.6 Yes Yes msaito@whoi.edu Mak Saito No Environmental Aquatic Oceanic Marine Photic zone Seawater 0.8736 -97.0511 40138109 39600 24 0 24 0 SRX3375629 Unrestricted 0.0 Single_particle_sort 3300021179 *Microbiome Permanent Draft Investigating the Microbiome of Thiomargarita & Thiopilula Thiomargarita spp. associated microbial communities from marine sediment, the Benguela Current, Namibia - ENDO004 University of Minnesota - Twin Cities 3300021179 Metagenome - Cell Enrichment Spades 3.10 released per PI No Yes beverlyflood@mac.com Beverly Flood No Host-associated Microbial Unclassified Bacteria Unclassified marine sediment -23.0025 14.09916667 1102651581 2522098 138 0 381 1 0.0 Single_particle_sort 3300021022 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera86 DOE Joint Genome Institute (JGI) 3300021022 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 10916177 10798 6 0 6 0 Unrestricted 0.0 Single_particle_sort 3300007686 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C03_wellA01 DOE Joint Genome Institute (JGI) 3300007686 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 13387 19 0 0 0 0 SRX3203254 Unrestricted 0.0 Single_particle_sort 3300010447 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.L7.16S negative DOE Joint Genome Institute (JGI) 3300010447 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 70232 90 0 0 0 0 SRX2748736 Unrestricted 0.0 Single_particle_sort 3300024200 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.F6 DOE Joint Genome Institute (JGI) 3300024200 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 1332148 1593 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300009283 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Santa Monica Basin, CA to study methane oxidation - BONCAT_CE_7061-Q-ConsG09 DOE Joint Genome Institute (JGI) 3300009283 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes hatzenpichler@caltech.edu, roland.hatzenpichler@montana.edu; vorphan@gps.caltech.edu Hatzenpichler, Roland Hatzenpichler; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 33.789 -119.2284 5044616 5557 2 0 2 0 SRX3204988 Unrestricted 0.0 Single_particle_sort 3300033089 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep2 HSBNCT.N11.300.1.C10 DOE Joint Genome Institute (JGI) 3300033089 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3675201 3825 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020639 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera46 DOE Joint Genome Institute (JGI) 3300020639 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 5897331 5849 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020904 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera20 DOE Joint Genome Institute (JGI) 3300020904 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7530939 7786 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300038923 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.2.2015 0410 MDM2 LHC4sed p2 16S.J14.double-seq DOE Joint Genome Institute (JGI) 3300038923 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 824705 1049 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300049403 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.E8 DOE Joint Genome Institute (JGI) 3300049403 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 3180784 3378 0 0 3 0 Unrestricted 0.0 Single_particle_sort 3300020905 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera32 DOE Joint Genome Institute (JGI) 3300020905 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7873772 7902 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034958 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - Total cells PlantN RepC EcoBCT.PlantN.5000.1.L4 DOE Joint Genome Institute (JGI) 3300034958 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 19134530 20789 7 0 9 0 Unrestricted 0.0 Single_particle_sort 3300034500 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.SSM.Mag.03.N8 DOE Joint Genome Institute (JGI) 3300034500 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 8636612 5992 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036199 *Microbiome Permanent Draft Marine microalgae viral communities from raceway pond in Palavas-les-Flots, France Enriched cells of marine microalgae from raceway pond in Palavas-les-Flots, France - 11.09.P4 MEGA virome DOE Joint Genome Institute (JGI) 3300036199 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes guillaume.blanc@mio.osupytheas.fr Guillaume Blanc No Host-associated Algae Unclassified Microalgae Unclassified marine microalgae 43.5198 3.9073 72523489 75666 19 0 22 0 Unrestricted 0.0 Single_particle_sort 3300036128 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_E5 DOE Joint Genome Institute (JGI) 3300036128 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 149011 195 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010524 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.M17.16S negative DOE Joint Genome Institute (JGI) 3300010524 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 503770 670 0 0 0 0 SRX2749578 Unrestricted 0.0 Single_particle_sort 3300047225 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_AV1_G3 DOE Joint Genome Institute (JGI) 3300047225 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 30717262 72870 15 0 25 0 Restricted 78.76 Single_particle_sort 3300032924 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep1 HSBNCT.FGM.300.1.N4 DOE Joint Genome Institute (JGI) 3300032924 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 10824088 9186 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034204 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep1 HSBNCT.FG11.300.03.F5 DOE Joint Genome Institute (JGI) 3300034204 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 2184890 2370 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300047224 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_AV1_E3 DOE Joint Genome Institute (JGI) 3300047224 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 34476354 80969 23 0 46 0 Restricted 90.14 Single_particle_sort 3300047127 *Microbiome Permanent Draft Freshwater fungal communities from various locations Enriched cells from freshwater from Lake Erie, Ontario, Canada - PSC177 Chytrid MDA DOE Joint Genome Institute (JGI) 3300047127 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes tyjames@umich.edu Timothy Y. James No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.828567 -82.501117 15673741 23331 1 1 1 1 Restricted 0.0 Single_particle_sort 3300010525 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.C16.16S negative DOE Joint Genome Institute (JGI) 3300010525 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 542593 675 0 0 0 0 SRX2749502 Unrestricted 0.0 Single_particle_sort 3300007392 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C85_wellG06 DOE Joint Genome Institute (JGI) 3300007392 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 884113 1071 0 0 0 0 SRX3201116 Unrestricted 0.0 Single_particle_sort 3300036272 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_C14 DOE Joint Genome Institute (JGI) 3300036272 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 45065 60 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300032925 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep2 HSBNCT.FGM.300.1.D10 DOE Joint Genome Institute (JGI) 3300032925 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 4953594 4903 4 0 3 0 Unrestricted 0.0 Single_particle_sort 3300021043 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera52 DOE Joint Genome Institute (JGI) 3300021043 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 13313888 13296 5 0 8 0 Unrestricted 0.0 Single_particle_sort 3300034205 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep1 HSBNCT.FG11.300.03.G4 DOE Joint Genome Institute (JGI) 3300034205 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 1607497 1810 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300033116 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep2 HSBNCT.N11.300.1.N11 DOE Joint Genome Institute (JGI) 3300033116 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2819849 2857 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300020769 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera63 DOE Joint Genome Institute (JGI) 3300020769 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7956146 8082 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300027922 *Microbiome Permanent Draft PaintPots Mound Soils and Cell Enrichments Soil bacterial communities from Paint Pots, Kootenay National Park, BC, Canada - NM25_DC reassembly University of Calgary 3300027922 Metagenome - Cell Enrichment SPAdes v. 3.10 released by Dunfield Laboratory Yes Yes dunfield.bio@gmail.com; pfdunfie@ucalgary.ca Dunfield Laboratory; Peter Dunfield No Environmental Terrestrial Sand Soil Forest soil soil 50.9769 -115.9592 34823373 50506 36 0 40 0 0.0 Single_particle_sort 3300007373 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C37_wellG01 DOE Joint Genome Institute (JGI) 3300007373 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 408559 522 0 0 0 0 SRX3200777 Unrestricted 0.0 Single_particle_sort 3300021033 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera12 DOE Joint Genome Institute (JGI) 3300021033 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 11671908 11812 5 0 6 0 Unrestricted 0.0 Single_particle_sort 3300024115 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.H11 DOE Joint Genome Institute (JGI) 3300024115 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 5134878 5426 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300036293 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.1.C6 DOE Joint Genome Institute (JGI) 3300036293 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 7826531 8022 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010660 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.N11.16S negative DOE Joint Genome Institute (JGI) 3300010660 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1083340 1376 0 0 0 0 SRX2750904 Unrestricted 0.0 Single_particle_sort 3300024217 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells of freshwater protists from Biology Centre CAS, Ceske Budejovice, Czech Republic - ZER3_1Amoeba_F21 DOE Joint Genome Institute (JGI) 3300024217 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Freshwater Unclassified enrichment culture 48.9774 14.4478 8133290 12532 0 1 0 1 Unrestricted 0.0 Single_particle_sort 3300004263 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from Chapel Hill, North Carolina, USA - Col MF FACS (version 3) (version 2) DOE Joint Genome Institute (JGI) 3300004263 Metagenome - Cell Enrichment MEGAHIT v. 0.2.0 Yes Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9077 -79.0508 20186159 70313 5 0 41 0 Unrestricted 0.0 Single_particle_sort 3300024114 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.C12 DOE Joint Genome Institute (JGI) 3300024114 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 6683118 7408 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010657 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.F13.16S negative DOE Joint Genome Institute (JGI) 3300010657 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1320113 1344 0 0 0 0 SRX2750336 Unrestricted 0.0 Single_particle_sort 3300038878 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - PDU D8.9.MDM2 PDU D8 p9 16S.I10.double-peak DOE Joint Genome Institute (JGI) 3300038878 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 353488 363 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300007422 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C01_HNv2 DOE Joint Genome Institute (JGI) 3300007422 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 3212503 3119 3 0 4 0 SRX2938998 Unrestricted 0.0 Single_particle_sort 3300007685 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C31_wellF01 DOE Joint Genome Institute (JGI) 3300007685 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 5619 9 0 0 0 0 SRX3202136 Unrestricted 0.0 Single_particle_sort 3300021529 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from gastrointestinal tract of the lab mouse from Pacific Northwest National Laboratory (PNNL), Richland, Washington, United States - LIM_E_Vancomycin_Pos DOE Joint Genome Institute (JGI) 3300021529 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov; aaron.wright@pnnl.gov Tanja Woyke; Aaron Wright No Host-associated Mammals Unclassified Digestive system Unclassified gastrointestinal tract 46.0 -119.0 6174933 6132 3 1 3 0 Unrestricted 0.0 Single_particle_sort 3300020780 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera72 DOE Joint Genome Institute (JGI) 3300020780 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 8782642 9167 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300017807 *Microbiome Permanent Draft Marine microbial communities from the Costa Rica Dome and surrounding waters Marine microbial communities from the Costa Rica Dome - N26 A9 mini metaG DOE Joint Genome Institute (JGI) 3300017807 Metagenome - Cell Enrichment MEGAHIT v. 1.0.6 Yes Yes msaito@whoi.edu Mak Saito No Environmental Aquatic Oceanic Marine Photic zone Seawater 0.8736 -97.0511 49224628 51104 26 0 44 2 SRX3375628 Unrestricted 0.0 Single_particle_sort 3300007684 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C44_wellH02 DOE Joint Genome Institute (JGI) 3300007684 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 25235 38 0 0 0 0 SRX3202751 Unrestricted 0.0 Single_particle_sort 3300010689 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.E9.16S negative DOE Joint Genome Institute (JGI) 3300010689 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1384019 1692 0 0 0 0 SRX2750277 Unrestricted 0.0 Single_particle_sort 3300021148 *Microbiome Permanent Draft Wastewater bioreactor cell enrichment communities from fuel cell cathode in Xiamen, China Wastewater bioreactor cell enrichment communities from fuel cell cathode in Xiamen, China - 1 Beijing Novogene Bioinformatics Technology Co., Ltd 3300021148 Metagenome - Cell Enrichment SOAPdenovo released by JGI data releasing policy No Yes yuezheng@uw.edu Yue Zheng No Engineered Bioreactor Cathode Microbial fuel cells/MFC Unclassified wastewater bioreactor 24.6099318 118.0649207 33571962 45796 31 4 57 5 0.0 Single_particle_sort 3300020649 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera30 DOE Joint Genome Institute (JGI) 3300020649 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 7557579 7213 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300020860 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera42 DOE Joint Genome Institute (JGI) 3300020860 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5497681 5626 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300046970 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.C7 DOE Joint Genome Institute (JGI) 3300046970 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 12006479 12938 2 0 5 0 Unrestricted 0.0 Single_particle_sort 3300010437 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.B7.Thermi DOE Joint Genome Institute (JGI) 3300010437 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 278471 351 1 0 1 0 SRX2750612 Unrestricted 0.0 Single_particle_sort 3300020906 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera87 DOE Joint Genome Institute (JGI) 3300020906 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7750456 7965 5 0 5 0 Unrestricted 0.0 Single_particle_sort 3300020982 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera11 DOE Joint Genome Institute (JGI) 3300020982 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 6821809 6823 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300032701 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep3 HSBNCT.T11.300.1.F14 DOE Joint Genome Institute (JGI) 3300032701 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 3862288 3918 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300038932 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Sandy's Spring West, Nevada, USA - SSWsed.3.2015 0414 MDM2 SSWsed p3 16S.C7.double-peak DOE Joint Genome Institute (JGI) 3300038932 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 40.653 -119.3749 880187 1019 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300020857 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera65 DOE Joint Genome Institute (JGI) 3300020857 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5375632 5530 0 0 3 0 Unrestricted 0.0 Single_particle_sort 3300047226 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_AV2_B3 DOE Joint Genome Institute (JGI) 3300047226 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 29869038 52335 18 0 20 0 Restricted 129.94 Single_particle_sort 3300034206 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep1 HSBNCT.FG11.300.03.H3 DOE Joint Genome Institute (JGI) 3300034206 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 2474610 2584 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020889 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera45 DOE Joint Genome Institute (JGI) 3300020889 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7471300 7238 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300032926 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep2 HSBNCT.FGM.300.1.D8 DOE Joint Genome Institute (JGI) 3300032926 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 6442496 6278 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300007443 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D97_LAv2 DOE Joint Genome Institute (JGI) 3300007443 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 7730640 7419 3 0 3 0 SRX2939202 Unrestricted 0.0 Single_particle_sort 3300033115 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep3 HSBNCT.N11.300.1.L13 DOE Joint Genome Institute (JGI) 3300033115 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 3343173 3658 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034931 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_D4 DOE Joint Genome Institute (JGI) 3300034931 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 426114 504 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300032847 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep1 HSBNCT.FGM.300.1.C6 DOE Joint Genome Institute (JGI) 3300032847 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 4675704 4334 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300031401 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.Vis6.EtOH.1-dapi+.5 DOE Joint Genome Institute (JGI) 3300031401 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 20072247 20886 15 0 19 0 Unrestricted 0.0 Single_particle_sort 3300034919 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_E3 DOE Joint Genome Institute (JGI) 3300034919 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 1086359 982 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010526 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.K8.16S negative DOE Joint Genome Institute (JGI) 3300010526 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 581056 676 0 0 0 0 SRX2748785 Unrestricted 0.0 Single_particle_sort 3300041877 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Cand. Thiomargarita magnifica 66 DOE Joint Genome Institute (JGI) 3300041877 Metagenome - Cell Enrichment spades v. 3.14.1 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 13742120 13582 1 0 6 0 Unrestricted 0.0 Single_particle_sort 3300009248 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsF09-p2 DOE Joint Genome Institute (JGI) 3300009248 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 1380161 1719 0 0 0 0 SRX3205148 Unrestricted 0.0 Single_particle_sort 3300036307 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.1.M8 DOE Joint Genome Institute (JGI) 3300036307 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 2181469 2425 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007389 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C20_wellD02 DOE Joint Genome Institute (JGI) 3300007389 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 743213 984 0 0 1 0 SRX3200262 Unrestricted 0.0 Single_particle_sort 3300033092 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep3 HSBNCT.N11.300.1.N15 DOE Joint Genome Institute (JGI) 3300033092 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2632860 2820 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010673 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.H13.16S negative DOE Joint Genome Institute (JGI) 3300010673 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1422721 1448 0 0 0 0 SRX2749407 Unrestricted 0.0 Single_particle_sort 3300031265 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.CF.EtOH.1-dapi+.2 DOE Joint Genome Institute (JGI) 3300031265 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 18843209 19334 10 0 14 0 Unrestricted 0.0 Single_particle_sort 3300034328 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep2 HSBNCT.FG11.5000.02.H6 DOE Joint Genome Institute (JGI) 3300034328 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 7465856 7360 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300024139 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.J6 DOE Joint Genome Institute (JGI) 3300024139 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 1390042 1644 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300036182 *Microbiome Permanent Draft Marine microalgae viral communities from raceway pond in Palavas-les-Flots, France Enriched cells of marine microalgae from raceway pond in Palavas-les-Flots, France - 17.04.P1_hot MEGA virome DOE Joint Genome Institute (JGI) 3300036182 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes guillaume.blanc@mio.osupytheas.fr Guillaume Blanc No Host-associated Algae Unclassified Microalgae Unclassified marine microalgae 43.5198 3.9073 15490443 19560 5 0 4 0 Unrestricted 0.0 Single_particle_sort 3300034827 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - Total cells PlantN RepA EcoBCT.PlantN.5000.1.F3 DOE Joint Genome Institute (JGI) 3300034827 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 3162897 3396 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300024111 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.J8 DOE Joint Genome Institute (JGI) 3300024111 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 3328863 3703 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300031264 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.CF.EtOH.1-dapi+.4 DOE Joint Genome Institute (JGI) 3300031264 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 17541862 18351 12 0 14 0 Unrestricted 0.0 Single_particle_sort 3300034399 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells T11 rep2 HSBNCT.T11.5000.01.I5 DOE Joint Genome Institute (JGI) 3300034399 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3919 6500945 6478 4 0 3 0 Unrestricted 0.0 Single_particle_sort 3300036210 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Santa Monica Basin, California, United States - ANME aggregate JGI_Orphan.7059.BNCT.2.N9 DOE Joint Genome Institute (JGI) 3300036210 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.7988 -118.6476 5348090 5710 1 0 2 1 Unrestricted 0.0 Single_particle_sort 3300021154 *Microbiome Permanent Draft Investigating the Microbiome of Thiomargarita & Thiopilula Thiomargarita spp. associated microbial communities from marine sediment, the Benguela Current, Namibia - TCHAIN005 University of Minnesota - Twin Cities 3300021154 Metagenome - Cell Enrichment Spades 3.10 released by JGI data releasing policy No Yes beverlyflood@mac.com Beverly Flood No Host-associated Microbial Unclassified Bacteria Unclassified marine sediment -23.0025 14.09916667 302762889 515123 37 7 83 6 0.0 Single_particle_sort 3300010462 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.D22.16S negative DOE Joint Genome Institute (JGI) 3300010462 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 193881 262 0 0 0 0 SRX2749669 Unrestricted 0.0 Single_particle_sort 3300032704 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep3 HSBNCT.T11.300.1.H14 DOE Joint Genome Institute (JGI) 3300032704 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 2637038 2756 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300006758 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C86_wellG05 DOE Joint Genome Institute (JGI) 3300006758 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 321844 436 1 0 1 0 SRX3201085 Unrestricted 0.0 Single_particle_sort 3300034935 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_I4 DOE Joint Genome Institute (JGI) 3300034935 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 185322 256 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300031405 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.Vis6.EtOH.1-dapi+.1 DOE Joint Genome Institute (JGI) 3300031405 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 24613096 25309 12 0 20 0 Unrestricted 0.0 Single_particle_sort 3300007707 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C62_wellC05 DOE Joint Genome Institute (JGI) 3300007707 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 46460 80 0 0 0 0 SRX3201340 Unrestricted 0.0 Single_particle_sort 3300014354 *Microbiome Finished Petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India Lab enriched petroleum sludge microbial communities from waste storage tank in Noonmati IOCL oil refinery, Guwahati, Assam, India - point GR3 UA 85 Life Technologies 3300014354 Metagenome - Cell Enrichment MetaVelvet v1.2.01 released by JGI data releasing policy No Yes sarkar.jayeeta12@gmail.com Jayeeta Sarkar No Engineered Bioremediation Unclassified Hydrocarbon Unclassified petroleum sludge 26.18471 91.80725 145137647 447918 370 0 613 1 SRX2512231 0.0 Single_particle_sort 3300033139 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells N11 rep1 HSBNCT.N11.300.1.N3 DOE Joint Genome Institute (JGI) 3300033139 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2369702 2625 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034934 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_G4 DOE Joint Genome Institute (JGI) 3300034934 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 793810 1017 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300032705 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep3 HSBNCT.T11.300.1.H15 DOE Joint Genome Institute (JGI) 3300032705 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 3250982 3124 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300021155 *Microbiome Permanent Draft Investigating the Microbiome of Thiomargarita & Thiopilula Thiomargarita spp. associated microbial communities from marine sediment, the Benguela Current, Namibia - ENDO0001 University of Minnesota - Twin Cities 3300021155 Metagenome - Cell Enrichment Spades 3.10 released per PI No Yes beverlyflood@mac.com Beverly Flood No Host-associated Microbial Unclassified Bacteria Unclassified marine sediment -23.0025 14.09916667 887485631 2091167 150 4 366 11 0.0 Single_particle_sort 3300036789 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.K4 DOE Joint Genome Institute (JGI) 3300036789 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 4261941 4328 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300009251 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsF07UF DOE Joint Genome Institute (JGI) 3300009251 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes hatzenpichler@caltech.edu, roland.hatzenpichler@montana.edu; vorphan@gps.caltech.edu Hatzenpichler, Roland Hatzenpichler; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 1550288 1828 2 0 2 0 SRX3204473 Unrestricted 0.0 Single_particle_sort 3300021000 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera4 DOE Joint Genome Institute (JGI) 3300021000 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 7744418 8100 5 0 9 0 Unrestricted 0.0 Single_particle_sort 3300034301 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Bay of Concepcion, South Pacific Ocean - Ca. Marithioploca JBCH16032A2_Rep3_CE DOE Joint Genome Institute (JGI) 3300034301 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -36.51 -73.125 13326913 14118 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300017872 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-6_H3 DOE Joint Genome Institute (JGI) 3300017872 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 3204543 3726 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020873 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera61 DOE Joint Genome Institute (JGI) 3300020873 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5658098 6227 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300036697 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells N11 rep3 HSBNCT.N11.5000.01.L3 DOE Joint Genome Institute (JGI) 3300036697 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3921 5631456 6189 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020616 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera34 DOE Joint Genome Institute (JGI) 3300020616 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 4381631 4553 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300046963 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.G7 DOE Joint Genome Institute (JGI) 3300046963 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 21398898 21342 7 0 13 0 Unrestricted 0.0 Single_particle_sort 3300034543 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_ YuBhay.Mush06.RedA.1.H3 DOE Joint Genome Institute (JGI) 3300034543 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 932023 968 0 0 0 0 SRX8392463 Unrestricted 0.0 Single_particle_sort 3300005324 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME CR19B59 DOE Joint Genome Institute (JGI) 3300005324 Metagenome - Cell Enrichment spades v. 3.0.0 released per Miranda No Yes wagner@microbial-ecology.net Michael Wagner Yes 28386012.0 Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 63529789 67356 24 0 31 0 SRX2482141 Unrestricted 0.0 Single_particle_sort 3300032813 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep1 HSBNCT.FGM.300.1.L6 DOE Joint Genome Institute (JGI) 3300032813 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 11275451 9372 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007417 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C02_HNv2 DOE Joint Genome Institute (JGI) 3300007417 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 2527383 2728 1 0 1 0 SRX2935388 Unrestricted 0.0 Single_particle_sort 3300008054 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D79_LA DOE Joint Genome Institute (JGI) 3300008054 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 2027041 2038 2 0 2 0 SRX2156187 Unrestricted 0.0 Single_particle_sort 3300009232 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsH09-p2 DOE Joint Genome Institute (JGI) 3300009232 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 743037 1032 1 0 1 0 SRX3205294 Unrestricted 0.0 Single_particle_sort 3300034243 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep1 HSBNCT.FG11.300.03.G5 DOE Joint Genome Institute (JGI) 3300034243 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 610370 672 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300021005 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera53 DOE Joint Genome Institute (JGI) 3300021005 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 8873335 9042 7 0 4 0 Unrestricted 0.0 Single_particle_sort 3300017849 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-2_E3 DOE Joint Genome Institute (JGI) 3300017849 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 6.39 981735 1156 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007406 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D83_LNv2 DOE Joint Genome Institute (JGI) 3300007406 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 1081003 1356 1 0 1 0 SRX2938626 Unrestricted 0.0 Single_particle_sort 3300032700 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep3 HSBNCT.T11.300.1.D13 DOE Joint Genome Institute (JGI) 3300032700 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 2176766 2272 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300021150 *Microbiome Permanent Draft Investigating the Microbiome of Thiomargarita & Thiopilula Thiomargarita spp. associated microbial communities from marine sediment, the Benguela Current, Namibia - TCHAIN003 University of Minnesota - Twin Cities 3300021150 Metagenome - Cell Enrichment Spades 3.10 released by JGI data releasing policy No Yes beverlyflood@mac.com Beverly Flood No Host-associated Microbial Unclassified Bacteria Unclassified marine sediment -23.0025 14.09916667 79617155 123445 12 1 24 1 0.0 Single_particle_sort 3300031400 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.Vis6.EtOH.1-neg.2 DOE Joint Genome Institute (JGI) 3300031400 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 11069058 11618 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034492 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.SSM.Mag.03.J6 DOE Joint Genome Institute (JGI) 3300034492 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 9259774 6165 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300021004 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera24 DOE Joint Genome Institute (JGI) 3300021004 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 8733428 8651 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300032788 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep1 HSBNCT.T11.300.1.M4 DOE Joint Genome Institute (JGI) 3300032788 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 10696627 9363 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034930 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_C4 DOE Joint Genome Institute (JGI) 3300034930 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 561859 600 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010698 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.L15.16S negative DOE Joint Genome Institute (JGI) 3300010698 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1896346 1900 0 0 1 0 SRX2751206 Unrestricted 0.0 Single_particle_sort 3300020943 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera73 DOE Joint Genome Institute (JGI) 3300020943 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 11366806 12027 3 0 2 0 Unrestricted 0.0 Single_particle_sort 3300047253 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_WG_HPG3_G3 DOE Joint Genome Institute (JGI) 3300047253 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 31594509 64701 19 0 40 0 Restricted 73.62 Single_particle_sort 3300020861 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera76 DOE Joint Genome Institute (JGI) 3300020861 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5561199 5764 1 0 3 0 Unrestricted 0.0 Single_particle_sort 3300010629 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.C7.16S negative DOE Joint Genome Institute (JGI) 3300010629 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 937765 1185 1 0 1 0 SRX2748735 Unrestricted 0.0 Single_particle_sort 3300028692 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Superior, Ontario, Canada - SU02.DCL.Total.C7 DOE Joint Genome Institute (JGI) 3300028692 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.3605 -85.6205 18815201 41587 6 0 10 0 Unrestricted 91.66 Single_particle_sort 3300010553 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.I22.16S negative DOE Joint Genome Institute (JGI) 3300010553 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 576001 784 0 0 1 0 SRX2750469 Unrestricted 0.0 Single_particle_sort 3300046971 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.F7 DOE Joint Genome Institute (JGI) 3300046971 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 4604869 4962 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300007482 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge C36_LANv2 DOE Joint Genome Institute (JGI) 3300007482 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 27582079 29992 7 0 18 0 SRX2937568 Unrestricted 0.0 Single_particle_sort 3300044895 *Microbiome Permanent Draft Deep subseafloor coalbed microbial communities from Japanese EEZ, North Pacific Ocean Enriched cells of subseafloor coalbed in Japanese EEZ, North Pacific Ocean - Sorted_minimetagenome_CSP506582_6065.8L4.40.T2.MeOH.C5.95 DOE Joint Genome Institute (JGI) 3300044895 Metagenome - Cell Enrichment metaspades v. 3.14.1 released based on JGI ITS Yes Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Terrestrial Unclassified Deep subsurface Unclassified Subseafloor coal bed 41.1766 142.2005 3816897 4183 5 0 11 0 Unrestricted 3974.68 Single_particle_sort 3300032809 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep2 HSBNCT.FGM.300.1.N9 DOE Joint Genome Institute (JGI) 3300032809 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 16071333 14061 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300009743 *Microbiome Permanent Draft Marine eukaryotic communities from CALCOFI LINE 67, Pacific Ocean, that are photosynthetic Marine eukaryotic communities from CALCOFI LINE 67, Pacific Ocean - CN13ID_Sort29A_1 DOE Joint Genome Institute (JGI) 3300009743 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes azworden@mbari.org Alexandra Worden Yes 31587639.0 Environmental Aquatic Oceanic Marine Unclassified Marine 33.292 -129.4193 29742266 30859 0 11 1 8 SRX2933103 Unrestricted 0.0 Single_particle_sort 3300043542 *Microbiome Permanent Draft Green algae associated microbial communities from Chlorella culture in University of Arizona, United States Enriched cells of Vampirovibrio chlorellavorus culture contaminated with Chlorella, University of Arizona, USA - Vampirovibrio chlorellavorus Vc_AZ 1_2 DOE Joint Genome Institute (JGI) 3300043542 Metagenome - Cell Enrichment metaspades v. 3.14.1 released based on JGI ITS Yes Yes jbrown@ag.arizona.edu Judith Brown No Engineered Lab culture Algae Culture media Contaminated lab culture 32.2308 -110.9534 166351808 247560 63 4 88 6 Unrestricted 157.52 Single_particle_sort 3300010502 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.H13.16S negative DOE Joint Genome Institute (JGI) 3300010502 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 367992 484 0 0 0 0 SRX2750994 Unrestricted 0.0 Single_particle_sort 3300020781 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera3 DOE Joint Genome Institute (JGI) 3300020781 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 9135321 9205 1 0 3 0 Unrestricted 0.0 Single_particle_sort 3300032902 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep3 HSBNCT.FGM.300.1.F13 DOE Joint Genome Institute (JGI) 3300032902 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 8134943 7572 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034222 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep1 HSBNCT.FG11.300.03.M3 DOE Joint Genome Institute (JGI) 3300034222 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 2644216 2974 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300044894 *Microbiome Permanent Draft Deep subseafloor coalbed microbial communities from Japanese EEZ, North Pacific Ocean Enriched cells of subseafloor coalbed in Japanese EEZ, North Pacific Ocean - Sorted_minimetagenome_CSP506582_6119.15R2.36.T2.MeAM.D4.95 DOE Joint Genome Institute (JGI) 3300044894 Metagenome - Cell Enrichment metaspades v. 3.14.1 released based on JGI ITS Yes Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Terrestrial Unclassified Deep subsurface Unclassified Subseafloor coal bed 41.1766 142.2005 3010647 6795 10 0 5 0 Unrestricted 2420.86 Single_particle_sort 3300020829 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera29 DOE Joint Genome Institute (JGI) 3300020829 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 3450553 3504 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300032986 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep1 HSBNCT.T11.300.1.C4 DOE Joint Genome Institute (JGI) 3300032986 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 5365632 5682 5 0 6 0 Unrestricted 0.0 Single_particle_sort 3300010661 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.K13.16S negative DOE Joint Genome Institute (JGI) 3300010661 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1156959 1388 0 0 0 0 SRX2750339 Unrestricted 0.0 Single_particle_sort 3300036215 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.C5 DOE Joint Genome Institute (JGI) 3300036215 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 6958016 7170 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034333 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep3 HSBNCT.FG11.5000.02.L3 DOE Joint Genome Institute (JGI) 3300034333 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 14071956 14791 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300032868 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake Hypolimnion, Wisconsin, USA - BchlTB.June25.5000.01.D3 DOE Joint Genome Institute (JGI) 3300032868 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 21335427 22367 5 0 4 0 Unrestricted 0.0 Single_particle_sort 3300010586 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.L18.16S negative DOE Joint Genome Institute (JGI) 3300010586 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 866621 962 0 0 0 0 SRX2750447 Unrestricted 0.0 Single_particle_sort 3300020898 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera28 DOE Joint Genome Institute (JGI) 3300020898 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7676431 7444 3 0 5 0 Unrestricted 0.0 Single_particle_sort 3300036117 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_G4 DOE Joint Genome Institute (JGI) 3300036117 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 108557 122 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300020922 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera31 DOE Joint Genome Institute (JGI) 3300020922 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 9322268 9356 5 0 5 0 Unrestricted 0.0 Single_particle_sort 3300036214 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.C4 DOE Joint Genome Institute (JGI) 3300036214 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 2737839 2858 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300009198 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsE09-p3 DOE Joint Genome Institute (JGI) 3300009198 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 57028 83 0 0 0 0 SRX3205397 Unrestricted 0.0 Single_particle_sort 3300034876 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells Plant RepB EcoBCT.Plant.5000.1.H3 DOE Joint Genome Institute (JGI) 3300034876 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 6336927 6690 4 0 2 0 Unrestricted 0.0 Single_particle_sort 3300017797 *Microbiome Permanent Draft Marine microbial communities from the Costa Rica Dome and surrounding waters Marine microbial communities from the Costa Rica Dome - N32 C7 mini metaG DOE Joint Genome Institute (JGI) 3300017797 Metagenome - Cell Enrichment MEGAHIT v. 1.0.6 Yes Yes msaito@whoi.edu Mak Saito No Environmental Aquatic Oceanic Marine Photic zone Seawater 0.8736 -97.0511 63623507 76903 53 0 87 1 SRX3375788 Unrestricted 107.05 Single_particle_sort 3300010956 *Microbiome Permanent Draft Mouse host associated microbial communities from Vienna, Austria Mouse cecal microbial communities from Vienna, Austria - Mucin amended with D2O DOE Joint Genome Institute (JGI) 3300010956 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes romans@mit.edu Roman Stocker No Host-associated Mammals Large intestine Digestive system Cecum Mouse cecum 48.2 16.37 80447450 82429 36 0 56 0 SRX2954874 Unrestricted 0.0 Single_particle_sort 3300028703 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Michigan, Michigan, United States - MI23.DCL.RED.C7 DOE Joint Genome Institute (JGI) 3300028703 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.1333 -87.0 73126385 156752 32 0 54 0 Unrestricted 238.61 Single_particle_sort 3300036278 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_H15 DOE Joint Genome Institute (JGI) 3300036278 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 165426 184 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034506 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.PSCntrl.SYBR.02.I4 DOE Joint Genome Institute (JGI) 3300034506 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 921613 1024 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300007398 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C61_wellC04 DOE Joint Genome Institute (JGI) 3300007398 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 848229 1073 0 0 0 0 SRX3200264 Unrestricted 0.0 Single_particle_sort 3300046975 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.B8 DOE Joint Genome Institute (JGI) 3300046975 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 14334430 15921 6 0 5 0 Unrestricted 0.0 Single_particle_sort 3300020864 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera4 DOE Joint Genome Institute (JGI) 3300020864 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 6207563 5896 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300032493 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells T11 rep3 HSBNCT.T11.300.1.F13 DOE Joint Genome Institute (JGI) 3300032493 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 2800783 2901 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034217 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep2 HSBNCT.FG11.300.03.C9 DOE Joint Genome Institute (JGI) 3300034217 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 3436564 3382 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300009267 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Santa Monica Basin, CA to study methane oxidation - BONCAT_CE_7061-Q-ConsH05 DOE Joint Genome Institute (JGI) 3300009267 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes hatzenpichler@caltech.edu, roland.hatzenpichler@montana.edu; vorphan@gps.caltech.edu Hatzenpichler, Roland Hatzenpichler; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 33.789 -119.2284 2354088 2900 1 0 0 0 SRX3204989 Unrestricted 0.0 Single_particle_sort 3300020865 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera33 DOE Joint Genome Institute (JGI) 3300020865 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5752693 5942 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300046974 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.D7 DOE Joint Genome Institute (JGI) 3300046974 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 17489904 17729 6 0 8 0 Unrestricted 0.0 Single_particle_sort 3300020917 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera37 DOE Joint Genome Institute (JGI) 3300020917 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 8699293 8856 4 0 6 0 Unrestricted 0.0 Single_particle_sort 3300038893 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from Little Hot Creek sediment, California, USA - LHC4sed.1.2015 0410 MDM2 LHC4 sed p1 16S.C7.double-peak DOE Joint Genome Institute (JGI) 3300038893 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 37.6906 -118.8442 345668 409 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034887 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - Total cells Plant RepC EcoBCT.Plant.5000.1.L6 DOE Joint Genome Institute (JGI) 3300034887 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 11577756 12865 4 0 5 0 Unrestricted 0.0 Single_particle_sort 3300034952 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells Soil RepC EcoBCT.Soil.5000.2.K5 DOE Joint Genome Institute (JGI) 3300034952 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 17383473 19286 3 0 10 0 Unrestricted 0.0 Single_particle_sort 3300009250 *Microbiome Permanent Draft Methane seep sediment microbial communities from various locations to study methane oxidation Methane seep sediment microbial communities from Hydrate Ridge, Oregon to study methane oxidation - BONCAT_CE_3730-ConsF04-p3 DOE Joint Genome Institute (JGI) 3300009250 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes twoyke@lbl.gov, twoyke@lbl.gov; vorphan@gps.caltech.edu Tanja Woyke, Tanja Woyke; Victoria Orphan Yes 27357680.0 Environmental Aquatic Cold seeps Marine Sediment Methane seep sediment 44.5692 -125.1539 1368137 1739 0 0 0 0 SRX3205398 Unrestricted 0.0 Single_particle_sort 3300021001 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera10 DOE Joint Genome Institute (JGI) 3300021001 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 7951510 7903 4 0 4 0 Unrestricted 0.0 Single_particle_sort 3300032977 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells FGM rep1 HSBNCT.FGM.300.1.C4 DOE Joint Genome Institute (JGI) 3300032977 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 2864064 2772 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034300 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Bay of Concepcion, South Pacific Ocean - Ca. Marithioploca JBCH16032A2_Rep2_CE DOE Joint Genome Institute (JGI) 3300034300 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -36.51 -73.125 1977765 2130 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034859 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from non-planted soil in EcoFAB chamber, Walnut Creek, California, United States - Total cells SoilN RepB EcoBCT.SoilN.5000.1.I6 DOE Joint Genome Institute (JGI) 3300034859 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 37.9316 -122.0217 13272472 13612 5 0 7 0 Unrestricted 0.0 Single_particle_sort 3300010577 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.H9.16S negative DOE Joint Genome Institute (JGI) 3300010577 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 801887 917 1 0 0 0 SRX2750705 Unrestricted 0.0 Single_particle_sort 3300010664 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.B5.16S negative DOE Joint Genome Institute (JGI) 3300010664 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1137150 1399 0 0 0 0 SRX2750485 Unrestricted 0.0 Single_particle_sort 3300034903 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from wastewater in WWTP, Nijmegen, Netherlands - WWTP_P2_D3 DOE Joint Genome Institute (JGI) 3300034903 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered WWTP Unclassified Wastewater Unclassified wastewater 51.8484 5.7962 74478 90 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010496 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.M20.16S negative DOE Joint Genome Institute (JGI) 3300010496 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 313862 453 0 0 0 0 SRX2750459 Unrestricted 0.0 Single_particle_sort 3300005118 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge cell enrichment microbial communities from Klosterneuburg, Austria - Nitrosomonas DOME D08B28 DOE Joint Genome Institute (JGI) 3300005118 Metagenome - Cell Enrichment spades v. 3.0.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 3181755 3375 1 0 1 0 SRX2482148 Unrestricted 0.0 Single_particle_sort 3300031433 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.CF.EtOH.1-fish+.2 DOE Joint Genome Institute (JGI) 3300031433 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 22716709 23126 9 0 12 0 Unrestricted 0.0 Single_particle_sort 3300024110 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.D4 DOE Joint Genome Institute (JGI) 3300024110 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 5567887 5758 2 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036211 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells from MDA reagents in Walnut Creek, California, United States - CE NoTemplateControl JGI_Orphan.7059.BNCT.2.J2 DOE Joint Genome Institute (JGI) 3300036211 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Engineered Industrial production Reagent blank Chemical products Unclassified MDA reagents 37.9313 -122.0217 32327 43 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300010665 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.I8.16S negative DOE Joint Genome Institute (JGI) 3300010665 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1417667 1402 0 0 0 0 SRX2748787 Unrestricted 0.0 Single_particle_sort 3300034767 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Bay of Concepcion, South Pacific Ocean - Ca. Thiomargarita JBCH1603RB5_Rep1_CE DOE Joint Genome Institute (JGI) 3300034767 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -36.51 -73.125 21780524 24754 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300021028 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera71 DOE Joint Genome Institute (JGI) 3300021028 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 12364543 11877 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300023388 *Microbiome Permanent Draft Terrestrial sediment cell enrichment communities for BONCAT metagenomics from Utah, United States Terrestrial sediment cell enrichment communities from Utah, United States - BONCAT_SYTO_Terrestrial_sediment - 14 DOE Joint Genome Institute (JGI) 3300023388 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes trnorthen@lbl.gov Trent Northen No Environmental Terrestrial Rock core/Sediment Deep subsurface Unclassified Terrestrial sediment 38.715 -109.6908 92725137 240644 130 0 211 0 Unrestricted 13.98 Single_particle_sort 3300036239 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_F10 DOE Joint Genome Institute (JGI) 3300036239 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 55600 61 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300024206 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.D10 DOE Joint Genome Institute (JGI) 3300024206 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 2965546 3508 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300020672 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgControl_Nextera22 DOE Joint Genome Institute (JGI) 3300020672 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 12431082 13138 7 0 8 0 Unrestricted 0.0 Single_particle_sort 3300020785 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera76 DOE Joint Genome Institute (JGI) 3300020785 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 8842427 9441 7 0 8 0 Unrestricted 0.0 Single_particle_sort 3300028932 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Michigan, Michigan, United States - MI23.DCL.Orng.C5 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028932 Metagenome - Cell Enrichment SPAdes v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.1333 -87.0 6751556 8666 2 0 5 0 Unrestricted 486.33 Single_particle_sort 3300007680 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Mammoth Norris Corridor, Yellowstone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_MammothNorrisCorridor_RoadsideSouth2_2_1783019015_C02_wellA02 DOE Joint Genome Institute (JGI) 3300007680 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.7533 -110.7247 30971 48 0 0 0 0 SRX3201123 Unrestricted 0.0 Single_particle_sort 3300020784 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera12 DOE Joint Genome Institute (JGI) 3300020784 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 9494999 9361 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300036133 *Microbiome Permanent Draft Biomass associated microbial communities from a wide range of natural environments and locations Enriched cells from marine mollusc in Pillar Point Harbor, California, United States - Doriopsilla_D6 DOE Joint Genome Institute (JGI) 3300036133 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mollusca Unclassified Tissue Unclassified mollusc tissue 37.5013 -122.4953 138753 172 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300033107 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep1 HSBNCT.N11.300.1.D5 DOE Joint Genome Institute (JGI) 3300033107 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 4022546 4251 2 0 3 0 Unrestricted 0.0 Single_particle_sort 3300046976 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.E8 DOE Joint Genome Institute (JGI) 3300046976 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 19833432 20575 3 0 11 0 Unrestricted 0.0 Single_particle_sort 3300020900 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera91 DOE Joint Genome Institute (JGI) 3300020900 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 7631284 7568 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300034505 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.SSM.Mag.03.M9 DOE Joint Genome Institute (JGI) 3300034505 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 8032187 5328 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300028942 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Michigan, Michigan, United States - MI23.SRF.RED.D7 (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028942 Metagenome - Cell Enrichment SPAdes v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 43.1333 -87.0 36830897 46410 15 0 13 0 Unrestricted 246.89 Single_particle_sort 3300020866 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinHeated_Nextera12 DOE Joint Genome Institute (JGI) 3300020866 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 5793411 6061 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300034504 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.SSM.Mag.03.M8 DOE Joint Genome Institute (JGI) 3300034504 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 9763798 7123 3 0 5 0 Unrestricted 0.0 Single_particle_sort 3300034317 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells N11 rep1 HSBNCT.N11.5000.01.F6 DOE Joint Genome Institute (JGI) 3300034317 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3921 4915312 5304 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300020988 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera45 DOE Joint Genome Institute (JGI) 3300020988 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 7328902 7168 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010948 *Microbiome Permanent Draft Mouse host associated microbial communities from Vienna, Austria Mouse cecal microbial communities from Vienna, Austria - N-Acetylglucosamine amended with D2O_GlcNAcC DOE Joint Genome Institute (JGI) 3300010948 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes romans@mit.edu Roman Stocker No Host-associated Mammals Large intestine Digestive system Cecum Mouse cecum 48.2 16.37 22682 24 0 0 0 0 SRX2954880 Unrestricted 0.0 Single_particle_sort 3300049387 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.C4 DOE Joint Genome Institute (JGI) 3300049387 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 34073467 34723 28 0 36 0 Unrestricted 0.0 Single_particle_sort 3300038938 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Sandy's Spring West, Nevada, USA - SSWsed.3.2015 0414 MDM2 SSWsed p3 16S.G7.double-peak DOE Joint Genome Institute (JGI) 3300038938 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 40.653 -119.3749 1023910 1083 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300032920 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells FGM rep3 HSBNCT.FGM.300.1.K14 DOE Joint Genome Institute (JGI) 3300032920 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.392 13668979 12594 3 0 5 0 Unrestricted 0.0 Single_particle_sort 3300036249 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.L4 DOE Joint Genome Institute (JGI) 3300036249 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 3261201 3312 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300008023 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge DR06_HAN DOE Joint Genome Institute (JGI) 3300008023 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 4225152 4204 2 0 5 0 SRX2338750 Unrestricted 0.0 Single_particle_sort 3300010520 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.F11.16S negative DOE Joint Genome Institute (JGI) 3300010520 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 512083 623 0 0 1 0 SRX2750903 Unrestricted 0.0 Single_particle_sort 3300031443 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.CF.UnFx.1-neg.1 DOE Joint Genome Institute (JGI) 3300031443 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 3693935 3763 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300034288 *Microbiome Permanent Draft Microbial communities from sediments and microbial mats in various locations Enriched cells from marine sediment in Benguela upwelling system, South Atlantic Ocean - Ca. Marithioploca JNN162YH_Rep3_CE DOE Joint Genome Institute (JGI) 3300034288 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes macgregb@umn.edu; beflood@umn.edu Barbara MacGregor; Beverly Flood No Environmental Aquatic Oceanic Marine Sediment sediment -23.0 14.0692 1952142 2176 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300020753 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera77 DOE Joint Genome Institute (JGI) 3300020753 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 6230045 6136 3 0 4 0 Unrestricted 0.0 Single_particle_sort 3300031970 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs Polaribacter B4 DOE Joint Genome Institute (JGI) 3300031970 Metagenome - Cell Enrichment spades v. 3.12.0 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 625363 763 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300047220 *Microbiome Permanent Draft Hot spring sediment microbial communities from Yellowstone National Park, WY, United States Enriched cells from hot spring sediment from Yellowstone National Park, WY, USA - BONCAT_sorted_cells Buffalo_pool_Qa_AV1_B3 DOE Joint Genome Institute (JGI) 3300047220 Metagenome - Cell Enrichment metaspades v. 3.15.2 released based on JGI ITS Yes Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Hot (42-90C) Thermal springs Sediment hot spring sediment 44.5324 -110.7974 27467510 67093 14 0 33 0 Restricted 82.6 Single_particle_sort 3300007401 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C33_wellF03 DOE Joint Genome Institute (JGI) 3300007401 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 663726 869 0 0 0 0 SRX3200659 Unrestricted 0.0 Single_particle_sort 3300034871 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - BONCAT cells Plant RepA EcoBCT.Plant.5000.1.E6 DOE Joint Genome Institute (JGI) 3300034871 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 10092610 10090 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300031373 *Microbiome Permanent Draft Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany Cell enrichment microbial communities of sorted cells from seawater in Helgoland offshore, North Sea, Germany - Fuchs.Vis6.EtOH.1-fish+.4 DOE Joint Genome Institute (JGI) 3300031373 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes bfuchs@mpi-bremen.de Bernhard Fuchs No Environmental Aquatic Unclassified Marine Unclassified seawater 54.1841 7.9 6640595 7107 6 0 9 0 Unrestricted 0.0 Single_particle_sort 3300036311 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.C4 DOE Joint Genome Institute (JGI) 3300036311 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 6555501 6833 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300010951 *Microbiome Permanent Draft Mouse host associated microbial communities from Vienna, Austria Mouse cecal microbial communities from Vienna, Austria - N-Acetylneuraminic acid amended with D2O_NANAD DOE Joint Genome Institute (JGI) 3300010951 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes romans@mit.edu Roman Stocker No Host-associated Mammals Large intestine Digestive system Cecum Mouse cecum 48.2 16.37 2958451 2936 2 0 2 0 SRX2954878 Unrestricted 0.0 Single_particle_sort 3300036339 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.M8 DOE Joint Genome Institute (JGI) 3300036339 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 7110668 7421 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010495 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.J13.16S negative DOE Joint Genome Institute (JGI) 3300010495 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 323462 445 0 0 0 0 SRX2749416 Unrestricted 0.0 Single_particle_sort 3300014198 *Microbiome Permanent Draft Sludge microbial communities from oil sands tailing ponds in Alberta, Canada, bioreactor enrichment Sludge microbial communities from oil sands tailing ponds in Alberta, Canada, bioreactor enrichment - mini-metagenomic Stanford University 3300014198 Metagenome - Cell Enrichment SPAdes v10.0; Megahit released by JGI data releasing policy No Yes brian.yu@czbiohub.or Brian Yu No Engineered Bioreactor Marine sediment inoculum Continuous culture sludge 53.526547 -113.530502 381893020 368041 51 1 54 1 0.0 Single_particle_sort 3300007428 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge D19_HAv2 DOE Joint Genome Institute (JGI) 3300007428 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 3515031 3554 2 0 3 0 SRX2938487 Unrestricted 0.0 Single_particle_sort 3300028689 *Microbiome Permanent Draft Freshwater microbial and viral communities from the Laurentian Great Lakes in the United States and Canada Enriched freshwater cyanobacterial communities from Lake Superior, Ontario, Canada - SU02.SRF.Total.C5 DOE Joint Genome Institute (JGI) 3300028689 Metagenome - Cell Enrichment spades v. 3.11.1 Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified fresh water 47.3605 -85.6205 14295769 31817 7 0 6 0 Unrestricted 58.92 Single_particle_sort 3300010581 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.E11.16S negative DOE Joint Genome Institute (JGI) 3300010581 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 813940 945 1 0 1 0 SRX2750905 Unrestricted 0.0 Single_particle_sort 3300038872 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from hot spring sediment in Dewar Creek, British Columbia, Canada - PDU D8.8.MDM2 PDU D8 p8 16S.L11.double-seq DOE Joint Genome Institute (JGI) 3300038872 Metagenome - Cell Enrichment spades v. 3.6.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 394833 439 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300006932 *Microbiome Permanent Draft Pelagic marine microbial communities from North Sea Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - Helgoland Island plankton_ULv995 (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300006932 Metagenome - Cell Enrichment spades v. 3.0.0 No Yes hteeling@mpi-bremen.de Hanno Teeling No Environmental Aquatic Pelagic zone Marine Sediment Pelagic marine 54.181054 7.892828 3838851 4139 2 0 3 0 SRX2719551 Unrestricted 0.0 Single_particle_sort 3300032981 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep1 HSBNCT.T11.300.1.N6 DOE Joint Genome Institute (JGI) 3300032981 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 12299495 11571 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010494 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.I13.Chloroflexi DOE Joint Genome Institute (JGI) 3300010494 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 362527 445 1 0 0 0 SRX2750340 Unrestricted 0.0 Single_particle_sort 3300010666 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.C6.16S negative DOE Joint Genome Institute (JGI) 3300010666 Metagenome - Cell Enrichment spades v. 3.6.0 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 1390838 1403 0 0 0 0 SRX2750226 Unrestricted 0.0 Single_particle_sort 3300020786 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera71 DOE Joint Genome Institute (JGI) 3300020786 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 9580340 9511 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300024205 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.G4 DOE Joint Genome Institute (JGI) 3300024205 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 2748989 3323 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300049419 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiovulum.cell.enrichment_JMV.Tvul.Set1.2.G11 DOE Joint Genome Institute (JGI) 3300049419 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 18913150 20755 8 0 12 0 Unrestricted 0.0 Single_particle_sort 3300034489 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.SSM.Mag.03.J3 DOE Joint Genome Institute (JGI) 3300034489 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 8721095 5930 1 0 0 0 Unrestricted 0.0 Single_particle_sort 3300024204 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.G13 DOE Joint Genome Institute (JGI) 3300024204 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 2590303 3116 0 0 1 0 Unrestricted 0.0 Single_particle_sort 3300024107 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.F8 DOE Joint Genome Institute (JGI) 3300024107 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 1968941 2143 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036646 *Microbiome Permanent Draft Soil microbial communities from Guangzhou, China Contaminated soil microbial communities from Guangzhou, China - SCN1 South China University of Technology (SCUT) 3300036646 Metagenome - Cell Enrichment spades v. 3.13 No Yes liuliangting.c14@gmail.com liangting liu No Environmental Terrestrial Unclassified Soil Unclassified Thiocyanate contaminated soil 23.13 113.27 37526553 67385 17 5 40 4 0.0 Single_particle_sort 3300021006 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWOrgHeat_Nextera44 DOE Joint Genome Institute (JGI) 3300021006 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.48 -72.1787 9010768 8945 4 0 3 0 Unrestricted 0.0 Single_particle_sort 3300007405 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C25_wellE01 DOE Joint Genome Institute (JGI) 3300007405 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 778150 954 0 0 0 0 SRX3200313 Unrestricted 0.0 Single_particle_sort 3300034343 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - Total cells FG11 rep1 HSBNCT.FG11.300.03.N5 DOE Joint Genome Institute (JGI) 3300034343 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 4352024 4483 1 0 3 0 Unrestricted 0.0 Single_particle_sort 3300024172 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells of freshwater protists from Biology Centre CAS, Ceske Budejovice, Czech Republic - ZER3_1Amoeba_C21 DOE Joint Genome Institute (JGI) 3300024172 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Unclassified Freshwater Unclassified enrichment culture 48.9774 14.4478 6905566 10547 0 1 0 1 Unrestricted 0.0 Single_particle_sort 3300007404 *Microbiome Permanent Draft Laboratory cell enriched microbial communities from Stanford University, California, USA, to study massive-scale metagenomic information Laboratory cell enriched microbial communities from Lower Geyser Basin, Yellostone National Park, Wyoming, USA, enriched at Stanford University - BY_YNP_LowerGeyserBasin_SprayGeyser2_1783019014_C13_wellC03 DOE Joint Genome Institute (JGI) 3300007404 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes quake@stanford.edu Stephen Quake No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Laboratory cell enriched 44.5317 -110.8735 715139 929 2 0 0 0 SRX3200260 Unrestricted 0.0 Single_particle_sort 3300017878 *Microbiome Permanent Draft Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States Enriched cells from koala feces incubated with labeled cellulose particles, San Francisco Zoo, California, United States - Koala_Koa2-7_G3 DOE Joint Genome Institute (JGI) 3300017878 Metagenome - Cell Enrichment spades v. 3.9.0 No Yes twoyke@lbl.gov Tanja Woyke No Host-associated Mammals Large intestine Digestive system Fecal koala feces 37.733 -122.502 5.11 10160169 10327 3 0 3 0 Unrestricted 0.0 Single_particle_sort 3300023997 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.I13 DOE Joint Genome Institute (JGI) 3300023997 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 2058223 2337 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300024029 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.01.H9 DOE Joint Genome Institute (JGI) 3300024029 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 33.47 -118.4 10916653 12068 1 0 7 0 Unrestricted 0.0 Single_particle_sort 3300020777 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera81 DOE Joint Genome Institute (JGI) 3300020777 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 8670788 8985 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010468 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.3.L11.16S negative DOE Joint Genome Institute (JGI) 3300010468 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 217558 298 0 0 0 0 SRX2749293 Unrestricted 0.0 Single_particle_sort 3300034501 *Microbiome Permanent Draft Sediment microbial communities from Massachusetts and Wyoming, United States Enriched cells from marine sediment in Little Sippewissett salt marsh, Falmouth, Massachusetts, United States - MMB.SSM.Mag.03.N9 DOE Joint Genome Institute (JGI) 3300034501 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes roland.hatzenpichler@montana.edu Roland Hatzenpichler No Environmental Aquatic Wetlands Marine Sediment marine sediment 41.5758 -70.6394 6877565 4636 1 0 2 0 Unrestricted 0.0 Single_particle_sort 3300044896 *Microbiome Permanent Draft Deep subseafloor coalbed microbial communities from Japanese EEZ, North Pacific Ocean Enriched cells of subseafloor coalbed in Japanese EEZ, North Pacific Ocean - Sorted_minimetagenome_CSP506582_6123.15R2.38.K.MeAM+NH4.C5 DOE Joint Genome Institute (JGI) 3300044896 Metagenome - Cell Enrichment metaspades v. 3.14.1 released based on JGI ITS Yes Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Terrestrial Unclassified Deep subsurface Unclassified Subseafloor coal bed 41.1766 142.2005 746353 2233 6 0 11 0 Unrestricted 6288.39 Single_particle_sort 3300046959 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Thiomargarita.cell.enrichment_JMV.Tmarg.Fil1.2.K6 DOE Joint Genome Institute (JGI) 3300046959 Metagenome - Cell Enrichment spades v. 3.15.2 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 14941191 15939 6 0 5 0 Unrestricted 0.0 Single_particle_sort 3300034322 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells N11 rep3 HSBNCT.N11.5000.01.K6 DOE Joint Genome Institute (JGI) 3300034322 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4352 -106.3921 3685929 3811 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300033029 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - BONCAT cells N11 rep1 HSBNCT.N11.300.1.C6 DOE Joint Genome Institute (JGI) 3300033029 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3921 2650178 2733 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300020933 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Enriched cells from forest soil in Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Alteio_BWMinControl_Nextera6 DOE Joint Genome Institute (JGI) 3300020933 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.48 -72.1787 10782397 10565 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300024201 *Microbiome Permanent Draft Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United States Sediment cell enrichment communities from methane seep in Santa Monica Basin, California, United Staets - ANME aggregate JGI 7047.SedFree.SYBR.02.E11 DOE Joint Genome Institute (JGI) 3300024201 Metagenome - Cell Enrichment spades v. 3.10.1 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 34.7244 -118.8819 1619491 1977 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300034599 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Enriched cells from microbial mat in Mushroom Spring, Yellowstone National Park, Wyoming, United States - Uncultured microbe JGI_YuBhay.Mush09.RedA.1.F3 DOE Joint Genome Institute (JGI) 3300034599 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 2219703 2357 1 0 1 0 SRX8394707 Unrestricted 0.0 Single_particle_sort 3300034940 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from lab-scale enrichment reactor in Nijmegen, Netherlands - NOB_reactor_P1_N4 DOE Joint Genome Institute (JGI) 3300034940 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes twoyke@lbl.gov; s.luecker@science.ru.nl Tanja Woyke; Sebastian Luecker No Engineered Bioreactor Unclassified Aerobic Unclassified bioreactor 51.8237 5.8685 472683 602 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010954 *Microbiome Permanent Draft Mouse host associated microbial communities from Vienna, Austria Mouse cecal microbial communities from Vienna, Austria - N-Acetylglucosamine amended with D2O_GlcNAcB DOE Joint Genome Institute (JGI) 3300010954 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes romans@mit.edu Roman Stocker No Host-associated Mammals Large intestine Digestive system Cecum Mouse cecum 48.2 16.37 34741586 33829 16 0 12 0 SRX2954881 Unrestricted 0.0 Single_particle_sort 3300010585 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.G21.16S negative DOE Joint Genome Institute (JGI) 3300010585 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 920799 960 0 0 0 0 SRX2751767 Unrestricted 0.0 Single_particle_sort 3300036314 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Jaco Scar, coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.10073.BNCT.2.E5 DOE Joint Genome Institute (JGI) 3300036314 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 9.1163 -84.8372 7445699 7827 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300034874 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - Total cells Plant RepA EcoBCT.Plant.5000.1.F5 DOE Joint Genome Institute (JGI) 3300034874 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 6452906 7135 2 0 4 0 Unrestricted 0.0 Single_particle_sort 3300032985 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep1 HSBNCT.T11.300.1.L3 DOE Joint Genome Institute (JGI) 3300032985 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 9588520 8323 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300036216 *Microbiome Permanent Draft Enriched cells of cold seep sediment from various locations in Pacific Ocean Enriched cells of cold seep sediment from Mound 12 at the coast of Costa Rica, Pacific Ocean - ANME aggregate JGI_Orphan.9063.BNCT.2.C7 DOE Joint Genome Institute (JGI) 3300036216 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes vorphan@gps.caltech.edu Victoria Orphan No Environmental Aquatic Cold seeps Marine Sediment sediment 8.9307 -84.3118 2690045 2791 1 0 1 0 Unrestricted 0.0 Single_particle_sort 3300032554 *Microbiome Permanent Draft Microbial communities from Trout Bog Lake Hypolimnion, Wisconsin, USA Enriched cells from Trout Bog Lake water, Wisconsin, United States - BchlTB.Aug20.5000.01 .C4 DOE Joint Genome Institute (JGI) 3300032554 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes sroux@lbl.gov Simon Roux No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.0412 -89.6861 5033714 5080 3 0 5 0 Unrestricted 0.0 Single_particle_sort 3300006508 *Microbiome Permanent Draft Marine eukaryotic communities from various locations to study complex ecological interactions Marine eukaryotic communities from Monterey Bay, USA to study complex ecological interactions - Minidiscus trioculatus JGI Plate_4_G5 Single Cell DOE Joint Genome Institute (JGI) 3300006508 Metagenome - Cell Enrichment spades v. 3.5.0 No Yes azworden@mbari.org, azworden@mbari.org; twoyke@lbl.gov Alexandra Worden, Alexandra Worden; Tanja Woyke No Environmental Aquatic Unclassified Marine Unclassified Marine 36.746 -122.026 39249949 46552 1 1 2 1 Unrestricted 0.0 Single_particle_sort 3300010584 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.4.D18.GAL08 DOE Joint Genome Institute (JGI) 3300010584 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org; ruhl.ilona@gmail.com Ramunas Stepanauskas; Ilona Ruhl No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 911506 956 0 0 0 0 SRX2750430 Unrestricted 0.0 Single_particle_sort 3300017811 *Microbiome Permanent Draft Marine microbial communities from the Costa Rica Dome and surrounding waters Marine microbial communities from the Costa Rica Dome - N19 A6 mini metaG DOE Joint Genome Institute (JGI) 3300017811 Metagenome - Cell Enrichment MEGAHIT v. 1.0.6 Yes Yes msaito@whoi.edu Mak Saito No Environmental Aquatic Oceanic Marine Photic zone Seawater 0.8736 -97.0511 67304113 76579 36 0 55 0 SRX3375204 Unrestricted 0.0 Single_particle_sort 3300034875 *Microbiome Permanent Draft Enriched cells from switchgrass and soil in EcoFAB chamber, Walnut Creek, California, United States Enriched cells from switchgrass in EcoFAB chamber, Walnut Creek, California, United States - Total cells Plant RepA EcoBCT.Plant.5000.1.F6 DOE Joint Genome Institute (JGI) 3300034875 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes trnorthen@lbl.gov Trent Northen No Host-associated Plants Rhizosphere Roots Unclassified switchgrass 37.9316 -122.0217 5427483 5433 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010955 *Microbiome Permanent Draft Mouse host associated microbial communities from Vienna, Austria Mouse cecal microbial communities from Vienna, Austria - Glucosamine amended with D2O DOE Joint Genome Institute (JGI) 3300010955 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes romans@mit.edu Roman Stocker No Host-associated Mammals Large intestine Digestive system Cecum Mouse cecum 48.2 16.37 77821086 77177 48 0 54 0 SRX2954873 Unrestricted 0.0 Single_particle_sort 3300041880 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Enriched cells from mangrove seawater in Basse-Terre, Guadeloupe - Cand. Thiomargarita magnifica 74 DOE Joint Genome Institute (JGI) 3300041880 Metagenome - Cell Enrichment spades v. 3.14.1 released based on JGI ITS No Yes twoyke@lbl.gov Tanja Woyke No Environmental Aquatic Intertidal zone Marine Mangrove swamp mangrove seawater 16.2781 -61.5582 13310875 12927 2 0 6 0 Unrestricted 0.0 Single_particle_sort 3300032984 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal bed in the Powder River Basin, Montana, United States - Total cells T11 rep2 HSBNCT.T11.300.1.L10 DOE Joint Genome Institute (JGI) 3300032984 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal core coal bed 45.4352 -106.3919 10998113 9235 2 0 2 0 Unrestricted 0.0 Single_particle_sort 3300010491 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Hot spring sediment microbial communities from Dewar Creek, Canada - MDM2.DC4.SYBR.5.B10.16S negative DOE Joint Genome Institute (JGI) 3300010491 Metagenome - Cell Enrichment spades v. 3.6.2 No Yes rstepanauskas@bigelow.org Ramunas Stepanauskas No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Hot spring sediment 49.9543 -116.5155 7.08 327295 436 0 0 0 0 SRX2750798 Unrestricted 0.0 Single_particle_sort 3300034233 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Enriched cells from coal slurry in the Powder River Basin, Montana, United States - BONCAT cells FG11 rep3 HSBNCT.FG11.300.03.D16 DOE Joint Genome Institute (JGI) 3300034233 Metagenome - Cell Enrichment spades v. 3.13.0 No Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Terrestrial Coalbed methane well Deep subsurface Coal slurry coal slurry 45.4351 -106.3918 527745 502 0 0 0 0 Unrestricted 0.0 Single_particle_sort 3300026447 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 125R_r (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026447 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 154909146 328462 172 40 279 492 SRX4796137 Unrestricted 26.99 Metatranscriptome 3300056914 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_123 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056914 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 13568501 34050 18 70 242 363 Unrestricted 0.0 Metatranscriptome 3300008456 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34684 J. Craig Venter Institute (JCVI) 3300008456 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 15823 22 0 0 0 0 0.0 Metatranscriptome 3300006591 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Ile_01_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006591 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 126286316 331363 377 239 1497 558 SRX3360348 Unrestricted 0.0 Metatranscriptome 3300006690 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP257 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006690 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -3.03 -27.33 54700688 151093 2425 3071 5742 8911 SRX3299177 Unrestricted 0.0 Metatranscriptome 3300059641 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 9R_AW_T1_R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059641 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 305074637 740250 512 303 1498 1755 Unrestricted 41.44 Metatranscriptome 3300037758 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - F18JunK (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037758 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4336 16.6836 46836561 91982 95 561 554 1938 SRX9164973 Unrestricted 33.78 Metatranscriptome 3300002642 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI074_135m_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002642 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 1064993 2354 1 11 52 125 Unrestricted 0.0 Metatranscriptome 3300046175 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_2_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046175 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 44713111 74780 1 0 15 1 Restricted 142.45 Metatranscriptome 3300037710 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of photosynthetic mat microbial communities from Mushroom Spring, YNP, Wyoming, United States - 20090730 1405 sample R13cd (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037710 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 128143454 312083 0 0 60 0 SRX9380940 Unrestricted 225.4 Metatranscriptome 3300056993 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Frasne, France - Sphagnum magellanicum 6OTC_MAG_FR (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056993 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 186110844 397730 217 125 542 643 Unrestricted 58.53 Metatranscriptome 3300037649 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_N3_C1_D2_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037649 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 63860370 121929 316 1702 2922 4390 SRX9385108 Unrestricted 200.58 Metatranscriptome 3300017096 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in L1 medium, 20 C, 21 psu salinity and 454 ?mol photons light - Staurosira sp. CCMP2646 (MMETSP1361) National Center for Genome Resources 3300017096 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -36.5062 -73.1225 29314308 31812 15 8 21 13 0.0 Metatranscriptome 3300002768 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS1_TP2_12H 3300002768 Metatranscriptome Analysis released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 969187 3414 52 2 58 6 0.0 Metatranscriptome 3300044222 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_252 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300044222 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 148007446 347038 79 298 3199 1389 Unrestricted 48.13 Metatranscriptome 3300012704 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES077 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012704 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.041 -89.686 130696300 241739 54 96 1385 2810 SRX3010935 Unrestricted 0.0 Metatranscriptome 3300032548 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_31MAY2016_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032548 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Unclassified Phyllosphere Unclassified phyllosphere 42.39 -85.37 119329480 204932 26 15 33 89 SRX7077500 Unrestricted 84.18 Metatranscriptome 3300011313 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S17 Bottom_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011313 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 82362164 189552 32 31 1713 803 SRX3787212 Unrestricted 0.0 Metatranscriptome 3300031007 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E7_S_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031007 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 160040825 561120 307 229 547 647 SRX3195628, SRX3341779 Unrestricted 0.0 Metatranscriptome 3300010100 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_0_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010100 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 60060728 135823 103 698 4914 6491 Unrestricted 0.0 Metatranscriptome 3300050748 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T3_2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050748 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 82826470 140299 22 1 139 30 Unrestricted 359.52 Metatranscriptome 3300016793 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from White Sea in artificial seawater, 22 C, 32 psu salinity and 747 ?mol photons light - Percolomonas cosmopolitus WS (MMETSP0759) National Center for Genome Resources 3300016793 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 22218677 19396 8 1 9 0 0.0 Metatranscriptome 3300066319 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Metatranscriptome of seawater eukaryotic communities from East Sound, Orcas Island, WA, USA - ORCAS_euks_20210616_20_09 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300066319 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 75003638 181390 187 87 361 376 Unrestricted 54.95 Metatranscriptome 3300030604 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cb2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030604 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 356938767 815945 132 138 1772 771 SRX4547034 Unrestricted 0.0 Metatranscriptome 3300024539 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepB_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024539 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 131803909 285752 45 101 595 858 SRX4547604 Unrestricted 19.45 Metatranscriptome 3300003154 *Microbiome Permanent Draft Bioreactor microbial community from anode biofilm in microbial fuel cells Anode biofilm microbial communities from J. Craig Venter Institute, USA, in microbial fuel cells J. Craig Venter Institute 3300003154 Metatranscriptome Analysis Velvet v. 1.1.02; CLC NGS Cell v. 4.04; Newbler v. 2.53 Made public because these are downloaded from Genbank No Yes sishii@jcvi.org Shunichi Ishii Yes 23511466 Engineered Bioreactor Anode Microbial fuel cells/MFC Biofilm Bioreactor 32.89 -117.23 290214330 450718 57 0 196 1 0.0 Metatranscriptome 3300043801 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA113 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043801 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Unclassified Soil Unclassified soil 35.7877 -78.6442 16904221 37230 241 359 2001 2272 Unrestricted 82.09 Metatranscriptome 3300016714 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Indian Ocean in artificial seawater with 0.125% Artemia detritus and 0.8% agar, 23 C, 25 psu salinity and 350 ?mol photons light - Schizochytrium aggregatum ATCC 28209 (MMETSP0964) National Center for Genome Resources 3300016714 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 8.0 53.0 21511101 22895 15 10 28 16 0.0 Metatranscriptome 3300036149 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10SB15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036149 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 60202989 117200 395 2221 4041 8107 SRX8378996 Unrestricted 44.95 Metatranscriptome 3300036465 *Microbiome Permanent Draft Rumen fluid microbial communities from dairy cows in UC Davis, California, USA Metatranscriptome of rumen fluid microbial communities from dairy cow in UC Davis, California, USA - UCD_Rumen_Seaweed_2632 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300036465 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bmroque@ucdavis.edu Breanna Roque No Host-associated Mammals Stomach Digestive system Rumen fluid rumen fluid 38.5368 -121.7595 89634655 177678 1 25 97 125 Unrestricted 0.0 Metatranscriptome 3300032442 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day14_8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032442 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 9944135 18495 13 0 57 0 SRX7582881 Unrestricted 103.31 Metatranscriptome 3300037072 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Metatranscriptome of forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_14 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037072 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 353695886 836342 27 197 1246 941 SRX8240607 Unrestricted 44.83 Metatranscriptome 3300030897 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T34 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030897 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 39242008 70903 66 18 132 159 SRX5794824 Unrestricted 15.51 Metatranscriptome 3300028847 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Ala2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028847 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 36696249 71635 8 13 315 53 SRX5356120 Unrestricted 92.84 Metatranscriptome 3300018628 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_111 - TARA_N000001820 (ERX1782125-ERR1711885) Canada's Michael Smith Genome Sciences Centre 3300018628 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -16.9587 -100.6751 71502466 189872 16 13 74 186 0.0 Metatranscriptome 3300008323 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - D9.FECAL.14dpc CCME-COLORADO 3300008323 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 1094986 4635 26 0 643 8 0.0 Metatranscriptome 3300032959 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_26JUN2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032959 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3941 -85.3741 135189959 234355 50 31 80 291 SRX7519751 Unrestricted 70.17 Metatranscriptome 3300036490 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of sediment microbial communities from Prado wetlands, California, USA - CSM_Prado_Oct18_AM1_2.5z2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036490 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 77796012 156548 91 267 1139 1291 SRX8771445 Unrestricted 38.59 Metatranscriptome 3300006374 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006374 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 125690781 360623 3197 14911 7274 34735 SRX3196456 Unrestricted 0.0 Metatranscriptome 3300028171 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0942-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028171 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 252794950 444395 24 50 20 75 SRX5244905 Unrestricted 70.4 Metatranscriptome 3300019166 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019166 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 49.043 13.6183 14488653 32327 7 155 221 775 SRX3937228 Unrestricted 0.0 Metatranscriptome 3300034665 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034665 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 210011227 480705 287 1148 6372 5851 SRX7519999 Unrestricted 24.26 Metatranscriptome 3300028728 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Lys2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028728 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 53137949 101236 10 1 126 1 SRX5356198 Unrestricted 63.04 Metatranscriptome 3300031869 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLI2 metaT (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031869 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified Plant litter 49.044 13.617 22166303 44668 66 422 564 2099 SRX5217065, SRX3936996 Unrestricted 0.0 Metatranscriptome 3300040765 *Microbiome Finished Lab enriched marine microbial communities from the Bohai Gulf, China Lab enriched marine microbial communities from the Bohai Gulf, China - OOH Hebei Normal University of Science &Technology 3300040765 Metatranscriptome Analysis Trinity v. 2.4.0 released by Si Li No Yes jackeikee@aliyun.com Si Li No Environmental Aquatic Gulf Marine Unclassified Marine 38.26 118.24 97126140 178359 46 33 169 93 0.0 Metatranscriptome 3300028098 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0934-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028098 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 177131969 293301 41 11 11 60 SRX5244862 Unrestricted 56.82 Metatranscriptome 3300022389 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.24 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022389 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.302 -123.036 288743431 709070 41 317 532 863 SRX4015799 Unrestricted 0.0 Metatranscriptome 3300031174 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_D6_4mM_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031174 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 8749508 14721 4 0 1 4 SRX6408412 Unrestricted 22.86 Metatranscriptome 3300052889 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 90-S41Day63 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052889 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 136062174 291392 26 6 102 27 Unrestricted 62.89 Metatranscriptome 3300004584 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 50_LOW8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004584 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 42779182 108080 167 29 990 54 SRX2780061 Unrestricted 0.0 Metatranscriptome 3300004490 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 123_LOW14 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004490 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 7442658 16441 290 20 1895 91 SRX2780257 Unrestricted 0.0 Metatranscriptome 3300022363 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.767 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022363 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.27 -123.946 22586322 43246 329 1238 6003 4484 SRX4019722 Unrestricted 0.0 Metatranscriptome 3300028320 *Microbiome Permanent Draft Black Band Disease transitions Coral surface microbial communities from stony corals with Black-band disease (BBD), Florida Keys National Marine Sanctuary, USA - LKT1 University of Florida 3300028320 Metatranscriptome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Coral Cnidaria Surface coral surface 24.5484806 -81.4059137 120383761 371771 4 58 15 104 0.0 Metatranscriptome 3300017011 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/4 medium with seawater, at 20 C, 34 psu salinity and 604 ?mol photons light - Paraphysomonas Imperforata PA2 (MMETSP0103) National Center for Genome Resources 3300017011 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 29490056 35199 14 9 17 8 0.0 Metatranscriptome 3300018821 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_125 - TARA_N000002021 (ERX1789489-ERR1719145) Canada's Michael Smith Genome Sciences Centre 3300018821 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.9124 -142.5595 177244430 467196 2 23 14 153 0.0 Metatranscriptome 3300004465 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 32 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004465 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 46620413 158902 3828 1296 12180 2543 Unrestricted 0.0 Metatranscriptome 3300041464 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaT AgResearch, New Zealand, Mosgeil 3300041464 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Rhizoplane Roots Dairy farm pasture -43.648506 172.343549 22358080 40719 857 524 3235 1353 0.0 Metatranscriptome 3300016876 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Sea in K medium, 15 C, 35 psu salinity and 506 ?mol photons light - Bolidomonas sp. RCC1657 (MMETSP1321) National Center for Genome Resources 3300016876 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 49.31666667 -3.31666667 23036372 27772 28 1 39 1 0.0 Metatranscriptome 3300052397 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_32 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052397 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 44976195 120246 135 117 454 670 Unrestricted 140.55 Metatranscriptome 3300009725 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from Louisiana Shelf, Gulf of Mexico - GoM_2015_C6C_229_18m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009725 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 28.8679 -90.4764 20817547 42210 206 139 7064 2078 Unrestricted 0.0 Metatranscriptome 3300021275 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.429 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021275 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.302 -123.036 29791621 63145 544 1517 9958 8696 SRX4016319 Unrestricted 0.0 Metatranscriptome 3300019284 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019284 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 4.2396 -73.2024 430751039 1016860 794 203 72224 1248 SRX3939605 Unrestricted 0.0 Metatranscriptome 3300047603 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_7_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047603 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 30410398 55868 4 0 26 1 Restricted 360.07 Metatranscriptome 3300049537 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B12_A_3_control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049537 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 167154613 410377 287 188 1339 1174 Unrestricted 64.13 Metatranscriptome 3300036352 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of sediment microbial communities from Prado wetlands, California, USA - CSM_Prado_Oct18_PM3_0.5z2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036352 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 140410222 278820 13 95 134 537 SRX8742663 Unrestricted 37.79 Metatranscriptome 3300051614 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 168_100_8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051614 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 140143059 364092 387 283 2519 1682 Unrestricted 60.07 Metatranscriptome 3300046136 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-143 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046136 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4615 -64.2246 88691091 213140 790 42 1406 702 Unrestricted 16.67 Metatranscriptome 3300026570 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Colum_RepB_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026570 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 297904937 600977 140 197 1557 2227 SRX4797155 Unrestricted 18.91 Metatranscriptome 3300059477 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 50R_CW_T2_R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059477 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 278783966 686622 598 373 2013 2087 Unrestricted 40.32 Metatranscriptome 3300052338 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of lake water microbial communities from Sandhills, Nebraska, United States - NSL_Bean_2019 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052338 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.7748 -102.5295 23137977 61342 124 63 533 259 Unrestricted 1502.18 Metatranscriptome 3300042407 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_120 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042407 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 139339971 314933 271 473 2402 2383 Unrestricted 34.37 Metatranscriptome 3300052764 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_70 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052764 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 208372041 541693 146 159 1184 892 Unrestricted 46.48 Metatranscriptome 3300036369 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen2, Rep 1, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036369 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 29935106 34133 0 0 0 2 SRX8380697, SRX8380698 Unrestricted 0.0 Metatranscriptome 3300018972 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_109 - TARA_N000001734 (ERX1789632-ERR1719168) Canada's Michael Smith Genome Sciences Centre 3300018972 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 2.0399 -84.5599 254084080 798638 9 30 39 284 0.0 Metatranscriptome 3300017339 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine host-associated eukaryotic communities from Atlantic Ocean in L1 medium w/o silica, 26 C, 35 psu salinity and 402 ?mol photons light - Symbiodinium sp. D1a (MMETSP1377) National Center for Genome Resources 3300017339 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Microbial Unclassified Dinoflagellates Unclassified marine host-associated 24.7335 -80.769167 54083787 110213 61 51 130 81 SRX554238 0.0 Metatranscriptome 3300030530 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE041SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030530 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2937 -71.1771 111633340 255952 35 46 1400 689 SRX4391322, SRX4391323 Unrestricted 0.0 Metatranscriptome 3300030631 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO141-VCO086SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030631 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr; fmartin@nancy.inra.fr Francis M. Martin; Francis M. MARTIN No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2779 -71.0916 664779035 1375129 127 119 1754 611 SRX4391378 Unrestricted 0.0 Metatranscriptome 3300046280 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_4_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046280 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 30441802 52205 1 0 13 2 Restricted 163.74 Metatranscriptome 3300022717 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022717 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 266867252 622745 341 514 5826 3736 SRX4405019 Unrestricted 0.0 Metatranscriptome 3300005496 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_2000 MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005496 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 66108230 146238 1509 107 5300 235 SRX2740057, SRX2740056 Unrestricted 0.0 Metatranscriptome 3300041679 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_290 MetaT AgResearch, New Zealand, Mosgeil 3300041679 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 14082459 31497 321 103 1827 185 0.0 Metatranscriptome 3300048603 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_1_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048603 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 28466072 42325 1 0 14 1 Restricted 187.3 Metatranscriptome 3300034396 *Microbiome Permanent Draft Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S39 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034396 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes colin.averill@usys.ethz.ch Colin Averill No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 36.0 -78.0 115708284 252434 18 81 515 347 SRX7586710 Unrestricted 109.09 Metatranscriptome 3300012731 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES145 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012731 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 205790940 424532 113 174 885 3352 SRX3011209 Unrestricted 0.0 Metatranscriptome 3300032699 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_12JUL2016_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032699 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Unclassified Phyllosphere Unclassified phyllosphere 42.39 -85.37 153588259 264118 69 70 128 428 SRX7077711 Unrestricted 63.61 Metatranscriptome 3300018888 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_102 - TARA_N000001648 (ERX1789571-ERR1719332) Canada's Michael Smith Genome Sciences Centre 3300018888 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -5.2669 -85.2732 250967468 639442 2 17 18 118 0.0 Metatranscriptome 3300012875 *Microbiome Permanent Draft Synthetic bacterial communities of pure cultures isolated from sediment of Lake Washington, USA Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under low oxygen conditions - MT methane_oxidizing 4strains_1hour-a (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012875 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes milachis@u.washington.edu Ludmila Chistoserdova No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 47.6553 -122.3035 20048110 54552 0 0 310 9 SRX3015536 Unrestricted 0.0 Metatranscriptome 3300011297 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN I3 S16 L6_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011297 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 48158882 120715 2 4 879 231 SRX2524521 Unrestricted 0.0 Metatranscriptome 3300052730 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MT_200917 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052730 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 40522213 88795 11 6 537 12 Unrestricted 0.0 Metatranscriptome 3300020064 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT27_16_1Ra (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300020064 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9225 -106.9514 163686680 385661 119 761 4608 5049 SRX3915626 Unrestricted 0.0 Metatranscriptome 3300017074 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Baffin Bay in K medium with sea water and antibiotics, no NH4Cl, 6 C, 33 psu salinity and 196 ?mol photons light - unclassified eukaryote CCMP 2298 (MMETSP1141) National Center for Genome Resources 3300017074 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 77.0014 -77.2383 25982312 30782 8 11 14 11 0.0 Metatranscriptome 3300042018 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Metatranscriptome of estuary water microbial communities from Narragansett Bay, Rhode Island, USA - E1_negO2CPA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042018 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.9078 -71.5683 369258046 703465 190 95 471 440 SRX14871060 Unrestricted 32.24 Metatranscriptome 3300046417 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_45S_Control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046417 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1825 -81.3644 28996753 66784 262 206 1130 950 Unrestricted 67.26 Metatranscriptome 3300030564 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO133-ANR020S0 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030564 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2719 -71.2088 503409247 1101665 105 310 2742 2520 SRX4010658 Unrestricted 0.0 Metatranscriptome 3300009844 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 2, 12m depth; RNA IDBA-UD Marine Biological Laboratory 3300009844 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 6.87 15982713 38373 2751 140 12764 343 0.0 Metatranscriptome 3300035611 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0819S12 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300035611 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0388 65241655 132609 190 406 5148 1556 SRX9140144, SRX9140143 Unrestricted 0.0 Metatranscriptome 3300010252 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_2100 MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010252 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 106491887 213066 3104 554 22421 1543 SRX2521853, SRX2521854 Unrestricted 0.0 Metatranscriptome 3300049710 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Weichs, Bavaria, Germany - PB8_MT_251018 (Metagenome Metatranscriptome) (Annotation) DOE Joint Genome Institute (JGI) 3300049710 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 48.39537892 11.44760761 93973927 193358 7 10 147 11 Unrestricted 47.64 Metatranscriptome 3300016813 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in artificial seawater with 0.125% Artemia detritus and 0.8% agar, 23 C, 25 psu salinity and 341 ?mol photons light - Aurantiochytrium limacinum ATCCMYA-1381 (MMETSP0960) National Center for Genome Resources 3300016813 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 9.53333 138.11667 22321490 22811 6 9 6 18 0.0 Metatranscriptome 3300016894 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine algae-associated eukaryotic communities from Atlantic Ocean in ATCC medium 1405, 20 C and 91 ?mol photons light - Trichosphaerium Am-I-7 wt (MMETSP0405) National Center for Genome Resources 3300016894 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Algae Unclassified Unclassified Unclassified marine algae-associated 34.46809 -120.27233 21211507 28582 2 1 3 1 0.0 Metatranscriptome 3300048675 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Metatranscriptome of soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048675 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.3476 -119.2808 62230024 103682 19 1 87 22 Unrestricted 34.38 Metatranscriptome 3300050687 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae culture inoculated with mixed bacterial community from LLNL, Livermore, California, USA - f8_d2_A_S15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050687 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 35890346 46513 1 0 5 10 Restricted 352.7 Metatranscriptome 3300002666 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI074_100m_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002666 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 8916971 21459 23 24 199 519 Unrestricted 0.0 Metatranscriptome 3300006573 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006573 Metatranscriptome Analysis megahit v. 0.2.0 No Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil 45.54 -73.72 587983873 2095984 137 19 302 58 SRX2522011 Unrestricted 0.0 Metatranscriptome 3300013196 *Microbiome Permanent Draft Synthetic bacterial communities of pure cultures isolated from sediment of Lake Washington, USA Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under high oxygen condition - MT methane_oxidizing 14strains_24hour-a (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013196 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes milachis@u.washington.edu Ludmila Chistoserdova No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 47.6553 -122.3035 21560941 35083 1 0 595 5 SRX3015711 Unrestricted 0.0 Metatranscriptome 3300016970 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in H/2 medium with NH4Cl, 24 C, 32 psu salinity and 764 ?mol photons light - Pinguiococcus pyrenoidosus CCMP 2078 (MMETSP1160) National Center for Genome Resources 3300016970 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 7.48 146.46 23576478 24371 1 1 1 3 0.0 Metatranscriptome 3300047589 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_7_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047589 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 22594005 42382 4 0 17 1 Restricted 303.26 Metatranscriptome 3300030929 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T21 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030929 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 35008509 66978 97 39 184 298 SRX5352352 Unrestricted 21.6 Metatranscriptome 3300030717 *Microbiome Permanent Draft Soil microbial communities from Risofladan, Vaasa, Finland Metatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - UN-3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030717 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes eva.hogfors-ronnholm@novia.fi Eva Hogfors-Ronnholm Yes Environmental Terrestrial Coastal area Soil Acid sulfate soil soil 63.0472 21.7116 89089381 169397 106 7 2201 29 SRX5356429 Unrestricted 36.3 Metatranscriptome 3300007323 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_C2_LD (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007323 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wagner@microbial-ecology.net Michael Wagner Yes 28386012 Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 136310516 399088 20524 18660 60926 43879 SRX3197495 Unrestricted 0.0 Metatranscriptome 3300023684 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRE2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023684 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 49.044 13.617 26902504 39168 5 14 289 157 SRX4454839 Unrestricted 31.65 Metatranscriptome 3300037656 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_N3_C1_D5_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037656 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 61617185 135113 180 306 2410 834 SRX9385694 Unrestricted 297.73 Metatranscriptome 3300003328 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-6-R (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003328 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 81483407 171858 13 12 145 58 SRX2557364 Unrestricted 0.0 Metatranscriptome 3300022530 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022530 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 398442386 932059 480 809 7963 6428 SRX4404031 Unrestricted 0.0 Metatranscriptome 3300003547 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - QV1.1_AUG13 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003547 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 8188330 15378 9 6 42 63 SRX3331179 Unrestricted 0.0 Metatranscriptome 3300046644 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_1_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046644 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 31990439 53291 1 0 14 0 Restricted 130.53 Metatranscriptome 3300023309 *Microbiome Permanent Draft Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Sorghum rhizosphere microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B2.ctcc.R1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300023309 Metatranscriptome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes colemanderr@gmail.com Devin Coleman-Derr No Host-associated Plants Rhizosphere Roots Unclassified sorghum rhizosphere 36.3390586 -120.12031 28193070 55960 996 1215 4305 3438 0.0 Metatranscriptome 3300006849 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1600(2)_T MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300006849 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 123991931 358710 90 9 395 11 SRX2739862 Unrestricted 0.0 Metatranscriptome 3300018726 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Eukaryotic communities of water from different depths collected during the Tara Oceans expedition - TARA_N000000618 (ERX1782150-ERR1711887) Genoscope 3300018726 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ocean water 142316538 319744 50 69 253 741 ERX1782263, ERX1782150, ERX1086440 0.0 Metatranscriptome 3300031196 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_D6_32mM_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031196 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 21119447 32920 0 0 0 5 SRX5783512 Unrestricted 26.05 Metatranscriptome 3300037890 *Microbiome Permanent Draft Marine planktonic microbial communities from Bay of Bengal, Indian Ocean Metatranscriptome of marine planktonic microbial communities from Bay of Bengal, Indian Ocean - 3V (SRX5580376-SRR8790599) Nanyang Technological University 3300037890 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. released by JGI data releasing policy Yes Yes flauro@ntu.edu.sg Federico Lauro No Environmental Aquatic Unclassified Marine Unclassified Marine planktonic 6.04 90.74 61438452 282690 1714 238 4985 3190 0.0 Metatranscriptome 3300032466 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_12SEP2016_LR2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032466 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Unclassified Phyllosphere Unclassified phyllosphere 42.39 -85.37 425335609 779931 157 113 222 649 SRX7077720 Unrestricted 54.88 Metatranscriptome 3300016771 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071412BT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016771 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 362218257 816717 91 164 1029 1924 SRX3781457 Unrestricted 0.0 Metatranscriptome 3300061819 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 28_rapeseed_1_T0 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061819 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 75502205 201336 195 208 1198 1271 Unrestricted 76.23 Metatranscriptome 3300036156 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp01_R14 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036156 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 121353024 246721 174 76 368 1011 SRX8835189 Unrestricted 61.51 Metatranscriptome 3300005411 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1400(2)_T MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005411 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 61209142 143878 36 1 214 5 SRX2521480, SRX2521479 Unrestricted 0.0 Metatranscriptome 3300018681 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_041 - TARA_N000000072 (ERX1782177-ERR1712164) Canada's Michael Smith Genome Sciences Centre 3300018681 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 14.5536 70.0128 94676411 244131 142 53 599 1430 0.0 Metatranscriptome 3300018580 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_139 - TARA_N000003039 (ERX1789370-ERR1719227) Canada's Michael Smith Genome Sciences Centre 3300018580 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 6.4808 -94.9704 32296733 81380 0 4 6 56 0.0 Metatranscriptome 3300017107 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/20 medium, no silicate, 19 C, 30 psu salinity and 446 ?mol photons light - Strombidinopsis sp. SopsisLIS2011 (MMETSP0463) National Center for Genome Resources 3300017107 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Estuary marine 41.0 -72.0 29353244 43698 6 9 10 24 0.0 Metatranscriptome 3300003720 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - QV1.2_Dec13 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003720 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 24946657 46284 160 38 339 88 SRX3339504 Unrestricted 0.0 Metatranscriptome 3300007248 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 6/11/14 D RNA (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007248 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ebyoung@uwm.edu Erica Young, Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 291434510 775857 2283 1513 5316 6986 SRX5628647 Unrestricted 0.0 Metatranscriptome 3300006277 *Microbiome Permanent Draft Prairie soil microbial communities from Kansas, USA, after rainfall Prairie soil microbial communities from Kansas, USA, after rainfall - K13 Oregon State University 3300006277 Metatranscriptome Analysis VELVET 1.2.10, combine 23, 27, 31 released per JGI data release policy No Yes lzeglin@ksu.edu Lydia Zeglin No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.1038 -96.6133 1491808 8912 11 4 19 6 0.0 Metatranscriptome 3300006396 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006396 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 264300332 700898 866 7411 2111 18453 SRX3196215 Unrestricted 0.0 Metatranscriptome 3300016835 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in L1 medium w/o silica, 20 C, 35 psu salinity and 676 ?mol photons light - Bathycoccus prasinos BCC 99000 (MMETSP0933) National Center for Genome Resources 3300016835 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 3.6 43.4 14978062 12543 5 1 4 1 0.0 Metatranscriptome 3300031004 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_S12_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031004 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -5.7 -26.0 335332506 1224610 741 458 1209 1452 SRX3342222 Unrestricted 0.0 Metatranscriptome 3300017497 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from La Jolla, California in f/2 medium with natural seawater and antibiotics, no silicate, 22 C, 21 psu salinity and 636 ?mol photons light - Kryptoperidinium foliaceum CCMP 1326 (MMETSP0120_2) National Center for Genome Resources 3300017497 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 32.9 -117.255 89715514 113512 13 7 10 9 0.0 Metatranscriptome 3300012707 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES154 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012707 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 125564751 265770 160 297 2128 5254 SRX3527335 Unrestricted 0.0 Metatranscriptome 3300046073 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-194 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046073 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4199 -64.1151 180702696 430769 483 30 908 394 Unrestricted 26.36 Metatranscriptome 3300002337 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI - B_15min_Anaerobic no depletion (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002337 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes tmcmahon@cae.wisc.edu, tmcmahon@engr.wisc.edu; tmcmahon@cae.wisc.edu Sludge Phage users, Katherine McMahon; Trina McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.078418 -89.386482 759383 2583 15 26 135 112 SRX2554558 Unrestricted 0.0 Metatranscriptome 3300036283 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0608U12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036283 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8973 -97.0409 57755342 119547 240 824 5538 2217 SRX8237145 Unrestricted 34.66 Metatranscriptome 3300011276 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP1423 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011276 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -38.3725 150.2505 14009968 31144 7 27 308 252 SRX3326340 Unrestricted 0.0 Metatranscriptome 3300039264 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_M1_C1_D6_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300039264 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 3683781 5628 51 38 823 118 SRX9602031 Unrestricted 156.99 Metatranscriptome 3300030835 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLU1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030835 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 59.9979 10.7895 8382299 16351 101 321 495 1541 SRX5351299 Unrestricted 0.0 Metatranscriptome 3300048678 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Metatranscriptome of soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048678 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.3476 -119.2808 68128238 120704 44 4 96 46 Unrestricted 41.75 Metatranscriptome 3300004602 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 52 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004602 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 99468918 294486 10219 2896 36799 6780 Unrestricted 0.0 Metatranscriptome 3300041739 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_442 MetaT AgResearch, New Zealand, Mosgeil 3300041739 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 56804860 120623 101 41 908 134 0.0 Metatranscriptome 3300035555 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Antarctic Ocean - DFB2_12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035555 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified Seawater -46.5954 142.0314 385727058 806180 912 83 1869 1625 SRX8226831 Unrestricted 17.37 Metatranscriptome 3300026444 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Atlam_RepC_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026444 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 154374222 307694 57 128 324 754 SRX4797207 Unrestricted 20.79 Metatranscriptome 3300030813 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030813 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 59.9979 10.7895 175366880 437459 22 56 99 262 SRX5351413 Unrestricted 0.0 Metatranscriptome 3300036587 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp03_R68 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036587 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 220634657 448931 223 62 525 943 SRX8840242 Unrestricted 47.33 Metatranscriptome 3300004799 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004799 Metatranscriptome Analysis megahit v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere and bulk soil 42.3912 -85.383786 693603127 2077919 1860 14365 6137 36800 SRX2705653 Unrestricted 0.0 Metatranscriptome 3300030894 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T32 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030894 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 46166465 83268 47 24 90 139 SRX5794802 Unrestricted 17.84 Metatranscriptome 3300037868 *Microbiome Permanent Draft Mimulus laciniatus plant microbial communities from University of California, Merced, CA, USA Metatranscriptome of roots and shoots microbial communities from Mimulus laciniatus plant - Mf_viral_1I1 RNA virus (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037868 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes msistrom@ucmerced.edu Mark Sistrom No Host-associated Plants Unclassified Mixed parts Unclassified Roots and shoots 37.3654 -120.4265 2390557 5626 4 10 29 45 SRX9172772 Unrestricted 764.6 Metatranscriptome 3300016838 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of freshwater eukaryotic communities from Lake Texoma, Oklahoma in f/2 medium with seawater, f/200 nitrate, 18 C, 18 psu salinity and 617 ?mol photons light - Prymnesium parvum Texoma1 (MMETSP0814) National Center for Genome Resources 3300016838 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 33.98 -96.67 19110411 24990 1 2 1 2 0.0 Metatranscriptome 3300016929 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 7 C, 32 psu salinity and 374 ?mol photons light - Dactyliosolen fragilissimus (MMETSP0580) National Center for Genome Resources 3300016929 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 41.325 -70.5667 23028309 22129 3 5 3 5 0.0 Metatranscriptome 3300023662 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic - CSE5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023662 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 49.0448 13.618 12116070 27516 56 48 1697 495 SRX4455247, SRX5243323 Unrestricted 0.0 Metatranscriptome 3300018532 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_132 - TARA_N000002420 (ERX1789576-ERR1719372) Canada's Michael Smith Genome Sciences Centre 3300018532 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 31.5213 -158.9958 8133371 21203 1 5 7 46 0.0 Metatranscriptome 3300017239 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in f/2 medium, 18 C, 35 psu salinity and 96 ?mol photons light - Thalassiosira rotula CCMP 3096 (MMETSP0403) National Center for Genome Resources 3300017239 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 49.65 -127.4338 36505283 39793 11 5 8 35 0.0 Metatranscriptome 3300030970 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB1 Emin (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030970 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7184 6.3471 618562891 1553925 4848 1510 10131 2949 SRX3349467 Unrestricted 0.0 Metatranscriptome 3300003157 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Avena fatua rhizosphere microbial communities - H3_Bulk_Litter_17 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003157 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes mkfstone@berkeley.edu, nuccio1@llnl.gov; mkfstone@berkeley.edu Mary Firestone, Erin Nuccio; Mary Firestone No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.97364 -123.117453 654573 1207 13 5 9 63 SRX2558222 Unrestricted 0.0 Metatranscriptome 3300030607 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Anb4 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030607 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 575038109 1197628 197 232 2173 1068 SRX4546937 Unrestricted 0.0 Metatranscriptome 3300008400 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34715 J. Craig Venter Institute (JCVI) 3300008400 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 11542 26 0 0 0 0 0.0 Metatranscriptome 3300020082 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300020082 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil corn rhizosphere 42.3948 -85.3738 1147141517 2602081 601 3459 14595 32262 SRX4925354, SRX4925355 Unrestricted 0.0 Metatranscriptome 3300059683 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_23 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059683 Metatranscriptome Analysis megahit v. 2021-11-04 04:20:59 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 236984952 546800 236 49 607 251 Unrestricted 0.0 Metatranscriptome 3300041986 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Metatranscriptome of feshwater microbial communities from Oregon, USA - littlewolfcreek_2019_sw_WHONDRS-S19S_0078 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300041986 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 43.4313 -123.5855 125717569 256641 509 908 2593 4154 SRX14870311 Unrestricted 55.09 Metatranscriptome 3300004546 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 62_LOW9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004546 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 40246698 91642 204 17 877 28 SRX2724371 Unrestricted 0.0 Metatranscriptome 3300008802 *Microbiome Permanent Draft Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample NP-1 University of Duisburg-Essen 3300008802 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Pond Freshwater Unclassified Eutrophic pond 51.46 7.0 100496382 360749 32 75 750 382 SRX505505 0.0 Metatranscriptome 3300052753 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_42 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052753 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 75485700 198123 97 134 873 778 Unrestricted 55.23 Metatranscriptome 3300001256 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring microbial communities from Elkhorn Slough, Monterey Bay, USA - MR6A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300001256 Metatranscriptome Analysis No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Intertidal zone Marine Estuary: Microbial mat Hypersaline mat 36.83 -121.785 1174355931 2917104 73 17 389 54 SRX3311478 Unrestricted 0.0 Metatranscriptome 3300019246 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_deep_8_15_core_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019246 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment wetland 41.3778 -82.5111 256595416 591497 766 435 42885 3584 SRX3899797 Unrestricted 0.0 Metatranscriptome 3300001448 *Microbiome Permanent Draft Microbial community impact on carbon sequestration in managed wetland Carbon farming Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk Metatranscriptome DOE Joint Genome Institute (JGI) 3300001448 Metatranscriptome Analysis Yes Yes stringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Wetland 38.107 -121.6475 35687945 96016 6178 1780 26148 8034 SRX3312991 0.0 Metatranscriptome 3300021336 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States - R1073 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021336 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 46.233 -123.886 264161220 547107 172 323 1040 4160 SRX4015456 Unrestricted 0.0 Metatranscriptome 3300017131 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in Aquil nutrients amended seawater, 60nM total Fe, at 20 C, 35 psu salinity and 727 ?mol photons light - Thalassiosira weissflogii CCMP 1336 (MMETSP0881) National Center for Genome Resources 3300017131 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 33293939 33175 7 9 11 15 0.0 Metatranscriptome 3300036161 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5WP15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036161 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 140125764 300974 334 1225 1183 3856 SRX8379530 Unrestricted 38.5 Metatranscriptome 3300046232 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_5_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046232 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 43611984 79798 2 0 28 2 Restricted 180.94 Metatranscriptome 3300006377 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S5 Surf_A metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006377 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@mail.ubc.ca, shallam@interchange.ubc.ca Steven J Hallam, Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 139045320 418009 2984 2908 7646 12124 SRX3196469 Unrestricted 0.0 Metatranscriptome 3300032451 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day5_9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032451 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 48843627 80607 10 1 42 6 SRX6857170 Unrestricted 174.98 Metatranscriptome 3300052335 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of lake water microbial communities from Sandhills, Nebraska, United States - NSL_Smith_2017 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052335 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@dbi.udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.78581 -102.52354 143711506 348404 388 172 1509 765 Unrestricted 159.1 Metatranscriptome 3300030582 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO145-ARE022SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030582 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2713 -71.2091 338834572 757292 62 61 1540 374 SRX4011192 Unrestricted 0.0 Metatranscriptome 3300002651 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF107 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002651 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.180244 5501876 14334 61 528 473 2564 SRX2014395 Unrestricted 0.0 Metatranscriptome 3300052782 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_90B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052782 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Bulk soil Soil 38.992973 -123.067448 15229639 41071 40 86 318 480 Unrestricted 183.17 Metatranscriptome 3300037595 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Metatranscriptome of lab enriched marine microbial communities from Marineland, Florida, USA - SW_R4_TP1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037595 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6475 -82.3464 188351086 390230 271 108 732 563 SRX9146285 Unrestricted 60.4 Metatranscriptome 3300052394 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_215 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052394 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 136768515 350067 171 149 1067 1007 Unrestricted 79.82 Metatranscriptome 3300031648 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_D6_0mM_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031648 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 24536991 35719 0 1 5 6 SRX6407511 Unrestricted 51.84 Metatranscriptome 3300027060 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0492-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300027060 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 185245079 317047 8 10 7 73 SRX5256782 Unrestricted 116.15 Metatranscriptome 3300059652 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 72R_SD_T2_R4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059652 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 302567392 782488 408 264 1884 1653 Unrestricted 68.2 Metatranscriptome 3300041467 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover leaf microbial community from Lincoln, Canterbury, New Zealand - WCL17_2 MetaT AgResearch, New Zealand, Mosgeil 3300041467 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 5510219 9708 86 155 232 228 0.0 Metatranscriptome 3300048713 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Metatranscriptome of estuary water microbial communities from Narragansett Bay, Rhode Island, USA - E2_negO2CP_NB2 (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300048713 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.9078 -71.5683 15967196 38931 43 6 100 58 Restricted 96.73 Metatranscriptome 3300031762 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen6, Rep 2, Chloramphenicol (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031762 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 20188662 22716 0 2 1 3 SRX6409917, SRX6409918 Unrestricted 0.0 Metatranscriptome 3300018885 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_102 - TARA_N000001654 (ERX1789521-ERR1719396) Canada's Michael Smith Genome Sciences Centre 3300018885 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -5.252 -85.2052 199020950 619572 18 22 35 194 0.0 Metatranscriptome 3300037661 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_N3_C1_D4_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037661 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 49757811 104201 330 360 3690 997 SRX9385172 Unrestricted 252.76 Metatranscriptome 3300006933 *Microbiome Permanent Draft Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, for analyzing deforestation at different spatial scales Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A100I (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300006933 Metatranscriptome Analysis megahit v. 0.2.0 No Yes nusslein@microbio.umass.edu Nusslein, Klaus, Klaus Nusslein No Environmental Terrestrial Tropical forest Soil Unclassified Tropical rainforest soil -10.0 -62.0 62027540 210741 15130 4240 62693 11364 SRX5329107 Unrestricted 0.0 Metatranscriptome 3300030553 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cnb10 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030553 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 388008155 846130 139 217 2115 967 SRX4547083 Unrestricted 0.0 Metatranscriptome 3300010070 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_4_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010070 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 24713078 57102 70 430 8674 4182 Unrestricted 0.0 Metatranscriptome 3300004587 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 4_LOW4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004587 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 41335246 117632 7264 119 15895 254 SRX2779748 Unrestricted 0.0 Metatranscriptome 3300006402 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006402 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 369764327 988185 9466 12158 25944 35764 SRX3196461 Unrestricted 0.0 Metatranscriptome 3300041521 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Bulk soil microbial community from Lincoln, Canterbury, New Zealand - BS18_12 MetaT AgResearch, New Zealand, Mosgeil 3300041521 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Environmental Terrestrial Unclassified Soil Agricultural land Dairy farm pasture soil -43.648506 172.343549 19044482 36219 312 264 1621 784 0.0 Metatranscriptome 3300059669 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_9 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059669 Metatranscriptome Analysis megahit v. 2021-11-16 13:04:28 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 135926319 324850 184 55 431 243 Unrestricted 0.0 Metatranscriptome 3300010923 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS917_55_12C_TP1_7 Marine Biological Laboratory 3300010923 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 4087758 8576 429 4 645 10 0.0 Metatranscriptome 3300019259 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019259 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 336933035 769009 435 1679 45950 12702 SRX3939858 Unrestricted 0.0 Metatranscriptome 3300022714 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022714 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 230186885 564907 155 439 2657 3112 SRX4407893 Unrestricted 0.0 Metatranscriptome 3300004562 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 27_LOW6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004562 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 28689644 74023 997 35 2941 101 SRX2779910 Unrestricted 0.0 Metatranscriptome 3300047426 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81957c08-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047426 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 301598016 756425 350 261 1573 1480 Unrestricted 33.47 Metatranscriptome 3300021303 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States - R1080 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021303 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 46.233 -123.909 73985525 156833 179 634 1230 6635 SRX4015457 Unrestricted 0.0 Metatranscriptome 3300035441 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Antarctic Ocean - DFB2_07 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035441 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified Seawater -46.5954 142.0314 400518883 800067 1115 67 2162 1921 SRX8226653 Unrestricted 18.42 Metatranscriptome 3300028117 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepC_0h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028117 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 9355514 20379 21 58 264 305 SRX5245745 Unrestricted 17.49 Metatranscriptome 3300042404 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_114 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042404 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 89281068 196728 246 576 2782 3109 Unrestricted 36.33 Metatranscriptome 3300052767 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_74 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052767 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 160952936 404045 273 181 1448 1062 Unrestricted 64.25 Metatranscriptome 3300019262 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101412AT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019262 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 358232362 815996 228 472 5754 5404 SRX3921121 Unrestricted 0.0 Metatranscriptome 3300030876 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030876 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 59.9979 10.7895 8434002 15378 131 363 617 1924 SRX5351350 Unrestricted 0.0 Metatranscriptome 3300034668 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034668 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 302858706 710845 403 1415 7638 6391 SRX7520252 Unrestricted 27.01 Metatranscriptome 3300028725 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_His1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028725 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 46664981 90990 18 9 321 46 SRX5356174 Unrestricted 76.88 Metatranscriptome 3300004100 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF244 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004100 Metatranscriptome Analysis megahit v. 0.2.0 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.531427 -72.189946 141010691 459780 517 150 2394 983 SRX2014021 Unrestricted 0.0 Metatranscriptome 3300035368 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Metatranscriptome of Bradyrhizobium sp. W culture communities from SDSU, California, USA - Exp#2 BR2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035368 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Engineered Lab culture Bacteria Culture media Unclassified defined medium 32.7717 -117.0735 23369311 29531 3 0 11 2 SRX8293501 Unrestricted 684.13 Metatranscriptome 3300004559 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 30 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004559 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 60225030 208135 4771 2149 17156 4348 Unrestricted 0.0 Metatranscriptome 3300006861 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006861 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 153212890 558822 5174 3266 20718 6577 Unrestricted 0.0 Metatranscriptome 3300049534 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_B_2_drought (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049534 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 170383111 419367 140 169 1227 1160 Unrestricted 63.35 Metatranscriptome 3300028095 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 11R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028095 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 146025934 255545 145 32 258 501 SRX5172040 Unrestricted 27.19 Metatranscriptome 3300004468 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 74 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004468 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 115003811 316280 6596 2449 25697 5449 Unrestricted 0.0 Metatranscriptome 3300009728 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from Louisiana Shelf, Gulf of Mexico - GoM_2015_C6C_213_2m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009728 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 28.8679 -90.4764 48627385 90310 139 367 777 3417 Unrestricted 0.0 Metatranscriptome 3300010892 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS4_55_TP1_13L Marine Biological Laboratory 3300010892 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 556735 1616 76 3 296 8 0.0 Metatranscriptome 3300030567 *Microbiome Permanent Draft Metatranscriptome of decayed wood fungal communities from Pinus contorta in National Forests from Montana, United States Metatranscriptome of decayed wood fungal communities from Pinus contorta in Tenderfoot Creek Experimental Forest, Montana, United States - TCEF2-2S (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030567 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes dcullen@wisc.edu Daniel Cullen No Host-associated Plants Stem Phyllosphere Wood decay decayed wood 46.9233 -110.8694 115484229 246096 23 9 29 53 SRX4804162 Unrestricted 0.0 Metatranscriptome 3300049102 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 16 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049102 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 42.4305 -81.2062 5017825 10077 6 4 21 17 Restricted 115.44 Metatranscriptome 3300046414 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_23_Control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046414 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1783 -81.3611 53789622 122907 235 194 1697 968 Unrestricted 66.63 Metatranscriptome 3300017077 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in NEPC medium w/o nitrate, at 20 C, 30 psu salinity and 736 ?mol photons light - Thalassiosira minuscula CCMP 1093 (MMETSP0739) National Center for Genome Resources 3300017077 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 30340939 41153 34 3 43 9 0.0 Metatranscriptome 3300021278 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.302 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021278 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.313 -123.997 34715935 72946 405 1152 8256 6994 SRX4016153 Unrestricted 0.0 Metatranscriptome 3300020110 *Microbiome Permanent Draft Metatranscriptome of freshwater microbial communities within cyanobacterial aggregates from lake Taihu, China Freshwater microbial communities within cyanobacterial aggregates from lake Taihu, China - 10_4_0:00 Beijing Novogene Bioinformatics Technology Co., Ltd 3300020110 Metatranscriptome Analysis Trinity V.2.4.0 released by JGI data releasing policy No Yes hycai@niglas.ac.cn haiyuan cai No Environmental Aquatic Lake Freshwater Unclassified freshwater 31.3 120.11 9942172 27849 47 11 23 192 0.0 Metatranscriptome 3300020067 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT47_16_1Ra (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300020067 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9229 -106.9516 254908294 597850 51 495 7595 3824 SRX3915631 Unrestricted 0.0 Metatranscriptome 3300011294 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S19 250_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011294 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 45766441 110617 53 45 6291 2192 SRX3787305 Unrestricted 0.0 Metatranscriptome 3300004341 *Microbiome Permanent Draft Metatranscriptomics studies in sediment microbial communities from the mangroves in Sao Paulo, Brazil Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC1B 3300004341 Metatranscriptome Analysis IDBA released by JGI data releasing policy No Yes luc.g.cabral@gmail.com Luc?lia Cabral, Lucelia Cabral No Environmental Aquatic Intertidal zone Marine Mangrove sediment Mangrove sediment -23.8553 -46.1394 40253155 122908 2816 1334 13716 3989 0.0 Metatranscriptome 3300031031 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Litter C2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031031 Metatranscriptome Analysis megahit v. 0.2.0 No Yes fmartin1954@me.com; ake.olson@slu.se Francis M. Martin; Ake Olson No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 567927309 1454575 914 318 2158 981 SRX3345293 Unrestricted 0.0 Metatranscriptome 3300018643 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_128 - TARA_N000002299 (ERX1782462-ERR1712152) Canada's Michael Smith Genome Sciences Centre 3300018643 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 0.0396 -153.8066 85261061 194718 12 7 56 144 0.0 Metatranscriptome 3300012967 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012967 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 37.5161 -76.1223 254466076 587894 71 226 2901 4374 SRX3007432 Unrestricted 0.0 Metatranscriptome 3300002765 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS1_TP1_12H 3300002765 Metatranscriptome Analysis released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 768993 2557 151 5 112 3 0.0 Metatranscriptome 3300030023 *Microbiome Permanent Draft North Pond metatranscriptomes Metatranscriptome of crustal fluid microbial communities from North Pond, Mid-Atlantic Ridge, Atlantic Ocean - 1383CD 2014 Marine Biological Laboratory 3300030023 Metatranscriptome Analysis IDBA-UD v. 1.1.2 released by JGI data releasing policy No Yes lmseyler@gmail.com Lauren Seyler No Environmental Aquatic Oceanic Marine Unclassified Oceanic crustal fluids 22.75 -46.083 2733344 3755 963 159 1804 217 0.0 Metatranscriptome 3300003544 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA Grassland soil microbial communities from Hopland, California, USA - Sample H2_Rhizo_33 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003544 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes pettridge2@llnl.gov, nuccio1@llnl.gov; pettridge2@llnl.gov Jennifer Pett-Ridge, Erin Nuccio; Jennifer Pett-Ridge No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.972988 -123.116539 99559937 286952 357 207 1317 1775 SRX2563591 Unrestricted 0.0 Metatranscriptome 3300009279 *Microbiome Permanent Draft Eukaryotic communities of water from Amazon river, Brazil and North Atlantic ocean Eukaryotic communities of water from the North Atlantic ocean - ACM42 University of Georgia 3300009279 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 401338817 1177495 2 2 4 6 0.0 Metatranscriptome 3300030793 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030793 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7416 -117.7042 28603966 56933 55 35 108 148 SRX5351929 Unrestricted 18.85 Metatranscriptome 3300030714 *Microbiome Permanent Draft Soil microbial communities from Risofladan, Vaasa, Finland Metatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - UN-1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030714 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes eva.hogfors-ronnholm@novia.fi Eva Hogfors-Ronnholm Yes Environmental Terrestrial Coastal area Soil Acid sulfate soil soil 63.0472 21.7116 60598806 114898 118 4 1827 23 SRX5356427 Unrestricted 37.23 Metatranscriptome 3300052376 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_159 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052376 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 64227246 168665 98 133 693 719 Unrestricted 156.56 Metatranscriptome 3300050684 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae culture inoculated with mixed bacterial community from LLNL, Livermore, California, USA - f6_d2_A_S11 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050684 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 25551818 45815 1 0 5 3 Restricted 34.81 Metatranscriptome 3300019022 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_082 - TARA_N000001390 (ERX1782474-ERR1712194) Canada's Michael Smith Genome Sciences Centre 3300019022 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -47.2002 -58.2034 673315711 1523113 189 40 416 397 0.0 Metatranscriptome 3300016897 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine sediment eukaryotic communities from Great South Bay, New York in artificial seawater with 1% horse serum and 0.8% agar, 23 C, 25 psu salinity and 175 ?mol photons light - Aplanochytrium stocchinoi GSBS06 (MMETSP1347) National Center for Genome Resources 3300016897 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Sediment marine sediment 40.7 -73.1 13329131 18702 1 3 1 1 0.0 Metatranscriptome 3300046178 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_3_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046178 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 91017130 156875 6 21 171 150 Restricted 119.21 Metatranscriptome 3300000828 *Microbiome Permanent Draft Soil microbial communities from four geographically distinct crusts in the Colorado Plateau and Sonoran desert Soil microbial communities from Moab, Utah, sample - Soil Crust Dry out, 3 days (biological replicate C) D5C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300000828 Metatranscriptome Analysis No Yes elbrodie@lbl.gov, ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Desert Soil Unclassified Soil 38.714694 -109.692944 166743180 479979 42 404 229 1124 SRX3311669 Unrestricted 0.0 Metatranscriptome 3300006274 *Microbiome Permanent Draft Prairie soil microbial communities from Kansas, USA, after rainfall Prairie soil microbial communities from Kansas, USA, after rainfall - K04 Oregon State University 3300006274 Metatranscriptome Analysis VELVET 1.2.10, combine 23, 27, 31 released per JGI data release policy No Yes lzeglin@ksu.edu Lydia Zeglin No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.1038 -96.6133 658332 3859 14 0 21 2 0.0 Metatranscriptome 3300017104 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of freshwater eukaryotic communities from unknown location in MiEB1B12 medium, at 22 C, 0 psu salinity and 420 ?mol photons light - Gloeochaete wittrockiana SAG 46.84 (MMETSP0308) National Center for Genome Resources 3300017104 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 38214523 43364 20 2 35 6 0.0 Metatranscriptome 3300052439 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 29-S43Day7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052439 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 129988349 256197 23 1 86 13 Unrestricted 49.91 Metatranscriptome 3300007168 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_top_diel_T=7 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007168 Metatranscriptome Analysis megahit v. 0.2.0 No Yes binskeep@montana.edu, binskeep@montana.edu; jim.fredrickson@pnnl.gov William Inskeep, William P. Inskeep; Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Microbial mats 44.7315 -110.7113 42907695 104482 2851 17 5002 22 SRX2522152 Unrestricted 0.0 Metatranscriptome 3300018497 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_093 - TARA_N000001296 (ERX1782158-ERR1712103) Canada's Michael Smith Genome Sciences Centre 3300018497 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com Benjamin Tully No Environmental Aquatic Unclassified Marine Unclassified Marine -34.0614 -73.1066 2708696 8301 7 1 18 22 0.0 Metatranscriptome 3300018625 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_052 - TARA_N000000598 (ERX1782204-ERR1712199) Canada's Michael Smith Genome Sciences Centre 3300018625 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -16.957 53.9801 73541879 178359 91 28 412 339 0.0 Metatranscriptome 3300019151 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_068 - TARA_N000000705 (ERX1789682-ERR1719501) Canada's Michael Smith Genome Sciences Centre 3300019151 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -31.0551 4.668 467630935 930739 9 23 5 203 0.0 Metatranscriptome 3300003163 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003163 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes mkfstone@berkeley.edu, nuccio1@llnl.gov; mkfstone@berkeley.edu Mary Firestone, Erin Nuccio; Mary Firestone No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.97364 -123.117453 118338500 345367 638 616 3614 3261 SRX3332181 Unrestricted 0.0 Metatranscriptome 3300059509 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 54R_CD_T2_R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059509 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 204324144 497930 531 295 1721 1777 Unrestricted 53.44 Metatranscriptome 3300042579 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Metatranscriptome of feshwater microbial communities from Alabama, USA - blackwarrior_2019_sw_WHONDRS-S19S_0021 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042579 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 32.541 -87.7982 46482809 108327 229 145 894 899 Unrestricted 38.15 Metatranscriptome 3300032158 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen2, Rep 3, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032158 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 15383039 20110 0 0 24 0 SRX5359895 Unrestricted 55.86 Metatranscriptome 3300012693 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES075 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012693 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.041 -89.686 79084656 153821 53 92 3229 2785 SRX3010934 Unrestricted 0.0 Metatranscriptome 3300046647 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - S2-R2-B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046647 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3571 19.051 353403026 791295 310 170 961 674 Unrestricted 37.86 Metatranscriptome 3300035290 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Antarctic Ocean - DFB2_06 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035290 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified Seawater -46.5954 142.0314 378364537 763507 868 79 1600 1463 SRX8226641 Unrestricted 20.17 Metatranscriptome 3300052391 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_203 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052391 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 122949785 318142 163 164 1087 1045 Unrestricted 82.56 Metatranscriptome 3300011273 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP1492 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011273 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -25.2939 -179.3141 9879757 21951 1 9 257 89 SRX3326427 Unrestricted 0.0 Metatranscriptome 3300036286 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0817M12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036286 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0387 152886192 340936 372 732 6523 2516 SRX8237164 Unrestricted 22.28 Metatranscriptome 3300002654 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF113 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002654 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.180244 6259931 16379 141 473 370 2192 SRX2014399 Unrestricted 0.0 Metatranscriptome 3300017195 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Irish Sea in f/2 medium with seawater with 6mM bicarbonate, 21 C, 33 psu salinity and 407 ?mol photons light - Isochrysis galbana CCMP 1323 (MMETSP0943) National Center for Genome Resources 3300017195 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 54.085 -4.77 31346995 35333 63 3 89 8 0.0 Metatranscriptome 3300012390 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012390 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 150827629 365606 45 493 6611 5150 Unrestricted 0.0 Metatranscriptome 3300019225 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW1_MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019225 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 35.92 139.63 184770698 406904 70 219 15020 1333 SRX3903408 Unrestricted 0.0 Metatranscriptome 3300009392 *Microbiome Permanent Draft Microbial communities of red sea marine sponge, Stylissa carteri from the coast of Thuwal, Saudi Arabia Microbial communities of red sea marine sponge, Stylissa carteri from the coast of Thuwal, Saudi Arabia - rep 2 University of Wuerzburg 3300009392 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Porifera Unclassified Unclassified Unclassified marine sponge 22.23 39.03 158747533 332399 63 27 2210 753 0.0 Metatranscriptome 3300046076 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-183 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046076 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4963 -64.2287 45224235 108845 220 31 410 409 Unrestricted 32.48 Metatranscriptome 3300024540 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepA_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024540 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 144484464 301780 65 112 1125 1015 SRX4547803 Unrestricted 39.2 Metatranscriptome 3300041524 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Bulk soil microbial community from Lincoln, Canterbury, New Zealand - BS18_7 MetaT AgResearch, New Zealand, Mosgeil 3300041524 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Environmental Terrestrial Unclassified Soil Agricultural land Dairy farm pasture soil -43.648506 172.343549 26421052 53810 302 188 1542 544 0.0 Metatranscriptome 3300004525 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 63_LOW9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004525 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 18129493 45031 314 19 1677 51 SRX2780062 Unrestricted 0.0 Metatranscriptome 3300008042 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Puerto Morelos, Mexico - Orbicella 8 C C metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300008042 Metatranscriptome Analysis megahit v. 0.2.0 No Yes momedinamunoz@gmail.com Monica _ Medina, Medina Medina No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral host 20.8778 -86.8431 396267698 610856 89 185 296 883 SRX3362284 Unrestricted 0.0 Metatranscriptome 3300018827 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_122 - TARA_N000001938 (ERX1782415-ERR1712182) Canada's Michael Smith Genome Sciences Centre 3300018827 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -8.9971 -139.1963 179137035 483066 59 14 357 456 0.0 Metatranscriptome 3300017017 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Woods Hole, Massachussetts in DYV freshwater medium, 18 C, 0 psu salinity and 394 ?mol photons light - Dinobryon sp. UTEXLB2267 (MMETSP0019_2) National Center for Genome Resources 3300017017 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 41.57595 -70.64038 31132879 36123 19 13 23 7 0.0 Metatranscriptome 3300017160 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in NEPC medium, at 20 C, 30 psu salinity and 549 ?mol photons light - Thalassiosira minuscula CCMP 1093 (MMETSP0737) National Center for Genome Resources 3300017160 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 45708324 48184 22 12 32 15 0.0 Metatranscriptome 3300021218 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from nest from French Guiana - FG16_L2_4 mRNA SA University of Luxembourg 3300021218 Metatranscriptome Analysis CLC Genomics Workbench Version 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 5.02222222 -53.06166667 21455042 78972 1 0 2 0 0.0 Metatranscriptome 3300030698 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 33_T1F_2612EL1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030698 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 95216600 118829 1 9 40 322 SRX4646569 Unrestricted 0.0 Metatranscriptome 3300048965 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 52 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048965 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.8286 -82.5011 56949424 123183 122 72 300 414 Restricted 30.7 Metatranscriptome 3300030816 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLU6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030816 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 59.997 10.7902 10044739 18978 123 342 770 1945 SRX5351315 Unrestricted 0.0 Metatranscriptome 3300011308 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S18 NT29 metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011308 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 72581559 156299 80 568 1202 5666 SRX3787219 Unrestricted 0.0 Metatranscriptome 3300016695 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES164 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016695 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.099 -89.405 109567245 232609 180 238 3026 6044 SRX3780236 Unrestricted 0.0 Metatranscriptome 3300059493 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 19R_SW_T1_R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059493 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 467896121 1150314 611 395 2679 2315 Unrestricted 42.91 Metatranscriptome 3300032454 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day2_8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032454 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 46258074 76582 16 0 73 1 SRX6857169 Unrestricted 67.58 Metatranscriptome 3300010182 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0300_T MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010182 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 75847057 183051 111 1 576 2 SRX2521360, SRX2521359 Unrestricted 0.0 Metatranscriptome 3300036164 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8WB15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036164 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 124310126 249922 283 1834 2192 6160 SRX8379797 Unrestricted 38.59 Metatranscriptome 3300052409 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 3_100_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052409 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 123576902 310871 340 414 4285 2605 Unrestricted 28.55 Metatranscriptome 3300028319 *Microbiome Permanent Draft Black Band Disease transitions Cyanobacterial mat microbial communities from surface of stony corals with Black-band disease (BBD), Florida Keys National Marine Sanctuary, USA - LKB1 University of Florida 3300028319 Metatranscriptome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Coral Cnidaria Surface cyanobacterial mat 24.5484806 -81.4059137 39457423 103139 16 9 100 21 0.0 Metatranscriptome 3300017134 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Yellow Sea in f/2 medium w/o silicate, 20 C, 32 psu salinity and 738 ?mol photons light - Pyramimonas parkeae CCMP 726 (MMETSP0058) National Center for Genome Resources 3300017134 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 36.64 121.93 39491198 45672 10 2 9 3 0.0 Metatranscriptome 3300031475 *Microbiome Permanent Draft Soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - STER_N_R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031475 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thb15@psu.edu Terrence Bell No Engineered Artificial ecosystem Surface biofilm Soil microcosm Unclassified soil 40.7997 -77.8629 5689112 9570 16 0 41 10 SRX5810837 Unrestricted 95.12 Metatranscriptome 3300039423 *Microbiome Permanent Draft Sediment microbial communities from Lake Washington near Medina, WA, United States Metatranscriptome of methane-enriched sediment microbial communities from Lake Washington, WA, United States - HO-NA-1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300039423 Metatranscriptome Analysis MEGAHIT v. 1.2.9 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment sediment 47.6215 -122.2558 77109677 130772 1 3 4 3 SRX8379870 Unrestricted 266.48 Metatranscriptome 3300030891 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T26 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030891 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 30767067 56980 51 18 116 131 SRX5352481 Unrestricted 18.94 Metatranscriptome 3300004130 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF226 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004130 Metatranscriptome Analysis megahit v. 0.2.0 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.531427 -72.189946 33296617 120157 2548 677 8702 2413 SRX2014346 Unrestricted 0.0 Metatranscriptome 3300004543 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 64_LOW9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004543 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 34117848 81063 109 18 603 29 SRX2724372 Unrestricted 0.0 Metatranscriptome 3300024848 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepB_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024848 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 151717748 324239 67 141 1086 1202 SRX4547602 Unrestricted 25.47 Metatranscriptome 3300047618 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - P3-R3-B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047618 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.0477 42077634 97380 52 70 206 258 Unrestricted 32.6 Metatranscriptome 3300052756 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_51 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052756 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 86469876 224688 130 158 783 805 Unrestricted 54.97 Metatranscriptome 3300019065 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_047 - TARA_N000000278 (ERX1782424-ERR1711901) Canada's Michael Smith Genome Sciences Centre 3300019065 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -2.0465 72.1568 9486389 24689 55 15 265 230 0.0 Metatranscriptome 3300041983 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Metatranscriptome of feshwater microbial communities from Arizona, USA - sycamorecreek_2019_sw_WHONDRS-S19S_0028 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300041983 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 33.7508 -111.5081 37425050 79815 324 655 2201 3118 Unrestricted 55.06 Metatranscriptome 3300021333 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States - S.191 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021333 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.208 -123.693 183321357 476818 340 1052 7152 5162 SRX4015936 Unrestricted 0.0 Metatranscriptome 3300023438 *Microbiome Finished Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Sorghum rhizosphere microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B2.stcc QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300023438 Metatranscriptome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes colemanderr@gmail.com Devin Coleman-Derr No Host-associated Plants Rhizosphere Roots Unclassified sorghum rhizosphere 36.3390586 -120.12031 37774483 65376 197 1228 1403 3225 0.0 Metatranscriptome 3300019243 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR2_MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019243 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 36.29 139.38 203511062 432321 29 543 10998 1542 SRX3903410 Unrestricted 0.0 Metatranscriptome 3300010422 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS908_80_TP1_12H Marine Biological Laboratory 3300010422 Metatranscriptome Analysis CLC genomics wb7 released per JGI data release policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 1458386 3755 25 1 65 1 0.0 Metatranscriptome 3300037729 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Metatranscriptome of soil fungal communities from native Pine forests in California, United States - CAM_5 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037729 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Temperate forest Soil Bulk soil soil 36.5 -121.8 20899338 43991 61 89 318 538 SRX9140123 Unrestricted 44.65 Metatranscriptome 3300011032 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 27 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011032 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 19962862 50399 192 148 20880 1065 Unrestricted 0.0 Metatranscriptome 3300019090 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from deep sea water colum in Eastern Mediterranean Sea Metatranscriptome of marine microbial communities from deep sea water colum in Eastern Mediterranean Sea - KM3-8 Woods Hole Oceanographic Institution 3300019090 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 36.29 15.39 31161026 69765 1829 631 4803 1026 0.0 Metatranscriptome 3300006293 *Microbiome Permanent Draft Prairie soil microbial communities from Kansas, USA, after rainfall Prairie soil microbial communities from Kansas, USA, after rainfall - K09 Oregon State University 3300006293 Metatranscriptome Analysis VELVET 1.2.10, combine 23, 27, 31 released per JGI data release policy No Yes lzeglin@ksu.edu Lydia Zeglin No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.1038 -96.6133 40888029 226873 28 6 105 17 0.0 Metatranscriptome 3300043807 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_132 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043807 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 98768820 229516 191 384 2136 2030 Unrestricted 64.22 Metatranscriptome 3300055177 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP10.3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055177 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 175778759 359602 16 23 85 104 Unrestricted 32.33 Metatranscriptome 3300018748 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_125 - TARA_N000002025 (ERX1789516-ERR1719249) Canada's Michael Smith Genome Sciences Centre 3300018748 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.892 -142.6358 148139169 333174 1 20 1 132 0.0 Metatranscriptome 3300046150 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-86 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046150 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4413 -64.1645 58417484 139319 573 39 1043 383 Unrestricted 24.01 Metatranscriptome 3300021315 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_2_06_16RNAfungal (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021315 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 130800948 292608 1594 581 21640 5194 SRX4809153 Unrestricted 0.0 Metatranscriptome 3300018659 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_142 - TARA_N000003102 (ERX1782249-ERR1712111) Canada's Michael Smith Genome Sciences Centre 3300018659 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 25.6168 -88.4532 108130804 224477 21 12 108 244 0.0 Metatranscriptome 3300031001 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 5 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031001 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ake.olson@slu.se; francis.martin@inrae.fr Ake Olson; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 149417677 388192 25 37 30 107 SRX3344954 Unrestricted 0.0 Metatranscriptome 3300047349 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_3_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047349 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 26814715 51575 1 0 11 0 Restricted 303.62 Metatranscriptome 3300006597 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Oil_03_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006597 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 172088008 453992 576 527 1911 970 SRX3361122 Unrestricted 0.0 Metatranscriptome 3300030556 *Microbiome Permanent Draft Metatranscriptome of decayed wood fungal communities from Pinus contorta in National Forests from Montana, United States Metatranscriptome of decayed wood fungal communities from Pinus contorta in Tenderfoot Creek Experimental Forest, Montana, United States - TCEF3-3E (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030556 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes dcullen@wisc.edu Daniel Cullen No Host-associated Plants Stem Phyllosphere Wood decay decayed wood 46.9239 -110.8719 332980803 645908 32 4 54 34 SRX4804599 Unrestricted 0.0 Metatranscriptome 3300059647 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 43R_SW_T1_R4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059647 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 435543111 1060590 289 290 1493 1612 Unrestricted 33.81 Metatranscriptome 3300049132 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_B_7_drought (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049132 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 54057355 125730 156 92 713 553 Unrestricted 62.81 Metatranscriptome 3300009196 *Microbiome Permanent Draft Microbial communities of wastewater sludge from Singapore Microbial communities of wastewater sludge from Singapore - Sludge1_b2_February Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300009196 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified Wastewater sludge 1.2 103.45 321197959 1240698 7672 1298 48540 4453 SRX373537 0.0 Metatranscriptome 3300026441 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0930-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026441 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 171037993 293062 14 22 12 44 SRX4796398 Unrestricted 87.64 Metatranscriptome 3300041969 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - F18NovF (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300041969 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4202 16.665 74131800 149971 100 414 1018 1394 SRX10085524 Unrestricted 0.0 Metatranscriptome 3300030774 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Wood GP-1A (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030774 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dcullen@wisc.edu; francis.martin@inrae.fr Daniel Cullen; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 45.7544 -113.9094 472180270 1214918 1927 688 3792 1007 SRX3343419 Unrestricted 0.0 Metatranscriptome 3300018662 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_064 - TARA_N000000526 (ERX1782276-ERR1711878) Canada's Michael Smith Genome Sciences Centre 3300018662 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -29.4985 37.9926 94359683 230493 32 44 223 679 0.0 Metatranscriptome 3300016777 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in F/2 medium with silicate, w/o nitrate, at 15 C, 35 psu salinity and 595 ?mol photons light - Amphora coffeaeformis CCMP 127 (MMETSP0317) National Center for Genome Resources 3300016777 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 13134269 15895 4 3 2 5 0.0 Metatranscriptome 3300046035 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046035 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4056 -64.9059 82108447 194728 697 36 1131 532 Unrestricted 21.08 Metatranscriptome 3300046202 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_1_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046202 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 35442284 66954 1 0 20 1 Restricted 215.27 Metatranscriptome 3300010926 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS917_55_13C_TP1_5 Marine Biological Laboratory 3300010926 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 6420091 13979 598 2 275 6 0.0 Metatranscriptome 3300030910 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E5_T_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030910 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 448073908 1241519 430 175 910 331 SRX3341577 Unrestricted 0.0 Metatranscriptome 3300002870 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Avena fatua rhizosphere microbial communities - H1_Bulk_Litter_6 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002870 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes mkfstone@berkeley.edu, nuccio1@llnl.gov; mkfstone@berkeley.edu Mary Firestone, Erin Nuccio; Mary Firestone No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.97364 -123.117453 8290812 23719 111 136 800 1089 SRX2557997 Unrestricted 0.0 Metatranscriptome 3300017101 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in Artificial seawater, at 27 C, 30 psu salinity and 596 ?mol photons light - Crypthecodinium cohnii Seligo (MMETSP0326_2) National Center for Genome Resources 3300017101 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 20627981 43215 20 16 58 37 0.0 Metatranscriptome 3300047423 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81957852-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047423 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 241366988 586761 575 315 3220 1910 Unrestricted 47.43 Metatranscriptome 3300030958 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E6_X_5 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030958 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 415907094 1308434 254 182 451 447 SRX3341705 Unrestricted 0.0 Metatranscriptome 3300006271 *Microbiome Permanent Draft Prairie soil microbial communities from Kansas, USA, after rainfall Prairie soil microbial communities from Kansas, USA, after rainfall - K23 Oregon State University 3300006271 Metatranscriptome Analysis VELVET 1.2.10, combine 23, 27, 31 released per JGI data release policy No Yes lzeglin@ksu.edu Lydia Zeglin No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.1038 -96.6133 446610 2681 7 3 9 6 0.0 Metatranscriptome 3300019154 *Microbiome Permanent Draft Microbial communities from hydrothermal vent in East Pacific Rise, Pacific Ocean Fluid microbial communities from hydrothermal vent in East Pacific Rise, Pacific Ocean - LVP4 Bigelow Laboratory for Ocean Sciences 3300019154 Metatranscriptome Analysis Spades released by JGI data releasing policy No Yes ashleygrosche@yahoo.com Ashley Grosche No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Hydrothermal Fluids 9.84 -104.29 13473192 35222 29 2 103 6 0.0 Metatranscriptome 3300005417 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom. Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005417 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sgtringe@lbl.gov, rmmckay@bgsu.edu Susannah Tringe, Robert M. McKay No Environmental Aquatic Lentic Freshwater Unclassified Freshwater lake 41.69957 -83.2941 245615795 639401 969 5111 2845 10209 SRX3195589 Unrestricted 0.0 Metatranscriptome 3300018687 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - LD390M_ls1 J. Craig Venter Institute (JCVI) 3300018687 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 58.581234 18.232801 108127788 278533 59 27 288 225 0.0 Metatranscriptome 3300030873 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030873 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 59.9982 10.7894 32974595 71783 73 120 283 632 SRX5351411 Unrestricted 0.0 Metatranscriptome 3300049099 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 13 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049099 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 42.4305 -81.2062 8939650 17630 7 6 31 19 Restricted 80.89 Metatranscriptome 3300008832 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Eukaryotic communities of water collected during the Tara Oceans expedition - TARA_A200000150 Genoscope 3300008832 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ocean water 1515283511 3554948 266 130 1027 1778 ERX509463 0.0 Metatranscriptome 3300048705 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Metatranscriptome of beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - B2_RE1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048705 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Rectum rectum 49.2552 -122.5085 92876012 180777 1 2 66 8 Restricted 24.3 Metatranscriptome 3300017662 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in f/2 medium with seawater, 14 C, 36 psu salinity and 110 ?mol photons light - Ditylum brightwellii GSO103 (MMETSP1002) (SRX549030-SRR1294416) National Center for Genome Resources 3300017662 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 49.654 -127.436 5161065 10513 11 4 7 7 0.0 Metatranscriptome 3300052749 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052749 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 111171307 288098 161 148 1002 806 Unrestricted 63.1 Metatranscriptome 3300030711 *Microbiome Permanent Draft Soil microbial communities from Risofladan, Vaasa, Finland Metatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - TR-3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030711 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes eva.hogfors-ronnholm@novia.fi Eva Hogfors-Ronnholm Yes Environmental Terrestrial Coastal area Soil Acid sulfate soil soil 63.0472 21.7116 11693648 22262 62 17 510 39 SRX5356426 Unrestricted 65.01 Metatranscriptome 3300030549 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO137-ANR102SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030549 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.3106 -71.1018 495465015 1137000 157 189 5621 2458 SRX4011187 Unrestricted 0.0 Metatranscriptome 3300017340 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from South Atlantic Ocean in Standard Aquil medium with 100 uM EDTA, 4 C, 32 psu salinity and 111 ?mol photons light - Fragilariopsis kerguelensis L26-C5 (MMETSP0734) National Center for Genome Resources 3300017340 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -48.0 -16.0 47232098 65403 2 1 2 1 0.0 Metatranscriptome 3300061820 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 29_cerealrye_1_T0 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061820 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 58664789 157136 186 190 1130 1249 Unrestricted 84.54 Metatranscriptome 3300003719 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Ferric microbial mat communities from Yellowstone National Park, Wyoming, USA - One Hundred Spring Plain (OSP_B) (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003719 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Ferric mat 44.376 -110.69 21071026 36979 48 6 85 5 SRX2577129 Unrestricted 0.0 Metatranscriptome 3300031743 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean - PS103-1.R2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031743 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified marine -45.9539 6.2869 912449526 1669634 17 3 28 116 SRX5356431 Unrestricted 13.38 Metatranscriptome 3300035617 *Microbiome Permanent Draft Sediment microbial communities from Lake Washington near Medina, WA, United States Metatranscriptome of methane-enriched sediment microbial communities from Lake Washington, WA, United States - HO-FL-3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035617 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment sediment 47.6215 -122.2558 114460042 149623 10 5 11 26 SRX8379917 Unrestricted 341.54 Metatranscriptome 3300050681 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae culture inoculated with mixed bacterial community from LLNL, Livermore, California, USA - f4_d2_A_S07 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050681 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 27305397 45155 5 0 4 3 Restricted 74.3 Metatranscriptome 3300021868 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021868 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 28.9381 -15.1547 27493178 63198 125 84 360 350 SRX5203743 Unrestricted 0.0 Metatranscriptome 3300050580 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae axenic culture microbial communities from LLNL, Livermore, California, USA - f13_d2_W_S22 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050580 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 22617307 25908 3 0 4 5 Restricted 274.02 Metatranscriptome 3300046013 *Microbiome Permanent Draft Acid mine drainage microbial communities from coal mines in Pennsylvania and Ohio, United States Metatranscriptome of lab enriched acid mine drainage microbial communities from Akron, Ohio, USA - PML2_14D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046013 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes shagun2260@gmail.com Shagun sharma No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage acid mine drainage 41.0775 -81.5114 67354600 153848 209 405 1167 2607 Unrestricted 82.97 Metatranscriptome 3300018646 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_068 - TARA_N000000713 (ERX1782189-ERR1712202) Canada's Michael Smith Genome Sciences Centre 3300018646 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -31.0198 4.6685 84674097 212413 25 29 106 448 0.0 Metatranscriptome 3300016955 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in Aquil nutrients amended seawater, 20nM total Fe, at 20 C, 35 psu salinity and 563 ?mol photons light - Thalassiosira weissflogii CCMP 1336 (MMETSP0880) National Center for Genome Resources 3300016955 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 32668200 32605 12 1 12 1 0.0 Metatranscriptome 3300030796 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030796 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7043 45473594 90860 79 42 127 229 SRX5794001 Unrestricted 16.36 Metatranscriptome 3300013060 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES085 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013060 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.041 -89.686 48849795 91155 55 24 1659 1859 SRX3010988 Unrestricted 0.0 Metatranscriptome 3300030805 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030805 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 59.9982 10.7894 34058540 76556 209 254 827 1323 SRX5351407 Unrestricted 0.0 Metatranscriptome 3300030026 *Microbiome Permanent Draft North Pond metatranscriptomes Metatranscriptome of crustal fluid microbial communities from North Pond, Mid-Atlantic Ridge, Atlantic Ocean - 1383CM 2012 Marine Biological Laboratory 3300030026 Metatranscriptome Analysis IDBA-UD v. 1.1.2 released by JGI data releasing policy No Yes lmseyler@gmail.com Lauren Seyler No Environmental Aquatic Oceanic Marine Crustal Fluids Oceanic crustal fluids 22.75 -46.083 2144888 3649 855 142 2000 249 0.0 Metatranscriptome 3300010010 *Microbiome Permanent Draft Black Band Disease transitions Microbial communities of stony corals with Black-band disease (BBD) from Carrie Bow Cay Field Station, Belize; BBD Transitions coral #3 sample B3 University of Maryland 3300010010 Metatranscriptome Analysis IDBA-Tran v1.1.1 released per JGI data release policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified marine 16.80288 -88.08213 41781415 96923 62 10 251 64 0.0 Metatranscriptome 3300031436 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_D6_8mM_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031436 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 22079813 33859 1 1 3 6 SRX6408126 Unrestricted 45.4 Metatranscriptome 3300010058 *Microbiome Permanent Draft Continental margin sediment microbial communities from various locations Metatranscriptome of continental margin sediment microbial communities from the Arctic Ocean - SV_M12_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010058 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michaelgraw@gmail.com; rcolwell@coas.oregonstate.edu Michael Graw; Frederick Colwell No Environmental Aquatic Continental margin Marine Sediment Continental margin sediment 79.0069 6.9021 1030765 2542 18 12 1048 34 SRX2525676 Unrestricted 0.0 Metatranscriptome 3300052373 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052373 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 137420652 360520 221 199 1531 1120 Unrestricted 89.67 Metatranscriptome 3300012737 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES003 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012737 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 26643827 57331 202 56 3867 1547 SRX3379870 Unrestricted 0.0 Metatranscriptome 3300038278 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_N3_C1_D1_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038278 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 70676053 141176 401 1727 4463 4912 SRX9390239 Unrestricted 96.45 Metatranscriptome 3300003284 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Avena fatua rhizosphere microbial communities - H3_Bulk_Litter_16 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003284 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes mkfstone@berkeley.edu, nuccio1@llnl.gov; mkfstone@berkeley.edu Mary Firestone, Erin Nuccio; Mary Firestone No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.97364 -123.117453 2241957 4808 36 37 50 373 SRX2558075 Unrestricted 0.0 Metatranscriptome 3300011291 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S19 250_B metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011291 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 43115002 102948 18 25 1737 1123 SRX3787351 Unrestricted 0.0 Metatranscriptome 3300031034 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Litter C1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031034 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ake.olson@slu.se; fmartin1954@me.com Ake Olson; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 632704928 1612668 1060 363 2422 1089 SRX3345296 Unrestricted 0.0 Metatranscriptome 3300005644 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_053 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005644 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Permafrost soil 68.6139 -149.3145 338592635 940507 269 2076 1099 4513 SRX2522023 Unrestricted 0.0 Metatranscriptome 3300008430 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.4.4LN.15dpc CCME-COLORADO 3300008430 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 10397953 39847 56 3 769 12 0.0 Metatranscriptome 3300030637 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 16_T1E_8DEL1 developmental time series (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030637 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 56940414 80088 24 26 492 656 SRX4646363 Unrestricted 0.0 Metatranscriptome 3300035444 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Antarctic Ocean - DFB2_17 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035444 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified Seawater -46.5954 142.0314 454700272 949339 1054 82 2006 1660 SRX8226857 Unrestricted 18.75 Metatranscriptome 3300018502 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_110 - TARA_N000001750 (ERX1782144-ERR1711886) Canada's Michael Smith Genome Sciences Centre 3300018502 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -2.0133 -84.589 10085595 25973 39 5 170 149 0.0 Metatranscriptome 3300031095 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_158 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031095 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92057636 -106.94874802 123626708 298776 877 452 2928 1901 SRX8133422 Unrestricted 24.96 Metatranscriptome 3300017209 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in L1 medium with NH4Cl, 20 C, 32 psu salinity and 767 ?mol photons light - Phaeomonas parva CCMP 2877 (MMETSP1163) National Center for Genome Resources 3300017209 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 7.48 146.46 28568906 36678 14 2 28 4 0.0 Metatranscriptome 3300022711 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022711 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 130823479 314902 202 438 5892 3396 SRX4408482 Unrestricted 0.0 Metatranscriptome 3300031725 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean - PS103-1.R1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031725 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified marine -45.9539 6.2869 618269332 1197130 20 5 39 143 SRX5356430 Unrestricted 11.31 Metatranscriptome 3300012696 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES083 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012696 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.041 -89.686 96238922 187772 76 75 2415 3045 SRX3010989 Unrestricted 0.0 Metatranscriptome 3300016808 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Ria de Vigo, Galicia in HESNW medium w/o silica, 22 C, 30 psu salinity and 629 ?mol photons light - Prorocentrum lima CCMP 684 (MMETSP0252) National Center for Genome Resources 3300016808 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 891290 2948 1 3 3 12 0.0 Metatranscriptome 3300049531 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049531 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 190014492 462511 228 132 1169 896 Unrestricted 84.33 Metatranscriptome 3300049630 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-70 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300049630 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4205 -64.1498 49925665 115274 494 82 1016 1794 Unrestricted 0.0 Metatranscriptome 3300031060 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031060 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 24599588 48624 65 38 122 176 SRX5794363 Unrestricted 26.43 Metatranscriptome 3300052937 *Microbiome Permanent Draft Sediment microbial communities from various environments and locations in Europe Metatranscriptome of sediment microbial communities from Baltic Sea, Sweden - H3D5S (Metagenome Metatranscriptome) (IMG v5.1) (version 2) DOE Joint Genome Institute (JGI) 3300052937 Metatranscriptome Analysis megahit v. 2020-12-01 12:07:44 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes o.eyice@qmul.ac.uk Ozge Eyice No Environmental Aquatic Sediment Marine Unclassified Sediment 58.8444 17.795 384893170 840163 33 43 884 258 SRX20998532 Unrestricted 0.0 Metatranscriptome 3300018999 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_142 - TARA_N000003100 (ERX1782275-ERR1712038) Canada's Michael Smith Genome Sciences Centre 3300018999 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 25.5921 -88.4388 606771929 1285192 52 45 217 506 0.0 Metatranscriptome 3300022500 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-26-O (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022500 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 43958838 95649 694 752 12621 5132 SRX4400687 Unrestricted 0.0 Metatranscriptome 3300017240 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in modified f/2 medium with seawater, 3 C, 33.6 psu salinity and 93 ?mol photons light - Proboscia alata PI-D3 (MMETSP0176) National Center for Genome Resources 3300017240 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -64.0038 -0.0025 47834312 62419 8 5 6 8 0.0 Metatranscriptome 3300017014 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Arabian Sea in L1 medium, 20 C, 32 psu salinity and 531 ?mol photons light - unclassified eukaryote CCMP 2000 (MMETSP1178) National Center for Genome Resources 3300017014 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 14.449 64.9997 14302310 26804 30 9 53 14 0.0 Metatranscriptome 3300008588 *Microbiome Permanent Draft Microbial communities of saline water collected from the North Sea in Germany Microbial communities of saline water collected from the North Sea in Germany - HE327_5 Goettingen Genomics Laboratory 3300008588 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified North sea 54.4575 7.9893 1911341 7643 237 240 1621 1347 0.0 Metatranscriptome 3300018824 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS850_ls4 J. Craig Venter Institute (JCVI) 3300018824 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 140836067 471454 103 28 152 402 0.0 Metatranscriptome 3300004581 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 37_LOW7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004581 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 33605786 79394 258 21 990 41 SRX2779926 Unrestricted 0.0 Metatranscriptome 3300017093 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in SN medium, at 22 C, 32 psu salinity and 278 ?mol photons light - Chlamydomonas euryale CCMP 219 (MMETSP0063_2) National Center for Genome Resources 3300017093 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 33928007 42613 1 1 3 1 0.0 Metatranscriptome 3300041527 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Bulk soil microbial community from Lincoln, Canterbury, New Zealand - BS18_9 MetaT AgResearch, New Zealand, Mosgeil 3300041527 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Environmental Terrestrial Unclassified Soil Agricultural land Dairy farm pasture soil -43.648506 172.343549 2376217 4072 89 100 264 249 0.0 Metatranscriptome 3300019281 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071409AT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019281 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 403574811 887977 400 653 10338 6052 SRX3921463 Unrestricted 0.0 Metatranscriptome 3300002657 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF115 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002657 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.180244 6749702 17067 162 520 536 2374 SRX2014400 Unrestricted 0.0 Metatranscriptome 3300030808 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030808 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7043 39557192 82704 66 50 149 258 SRX5793998 Unrestricted 18.78 Metatranscriptome 3300011316 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S19 Bottom_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011316 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 95664870 219308 82 65 6468 1509 SRX3787352 Unrestricted 0.0 Metatranscriptome 3300041461 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_7 MetaT AgResearch, New Zealand, Mosgeil 3300041461 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Rhizoplane Roots Dairy farm pasture -43.648506 172.343549 79338688 146693 700 449 3010 1190 0.0 Metatranscriptome 3300017137 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Baltic Sea in modified f/2 medium with seawater, 10nmol/L H2SeO3, no copper and silicate, 4 C, 15 psu salinity and 708 ?mol photons light - Skeletonema marinoi SM1012Hels-07 (MMETSP0319) National Center for Genome Resources 3300017137 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 59.51 23.15 34250290 33660 9 10 7 10 0.0 Metatranscriptome 3300003259 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment ColumnT-10K5-120 454 Life Sciences 3300003259 Metatranscriptome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.342219 40.479289 6-8 0 0 0 0 0 0 0.0 Metatranscriptome 3300018912 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_036 - TARA_N000000314 (ERX1782195-ERR1712243) Canada's Michael Smith Genome Sciences Centre 3300018912 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 20.807 63.513 405762405 751988 22 53 99 346 0.0 Metatranscriptome 3300036167 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen6, Rep 3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036167 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 62478400 92709 4 0 78 0 SRX8382086 Unrestricted 82.78 Metatranscriptome 3300016805 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in ATCC medium 790BY, 23 C, 25 psu salinity and 337 ?mol photons light - Aurantiochytrium limacinum ATCCMYA-1381 (MMETSP0958) National Center for Genome Resources 3300016805 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 9.53333 138.11667 20094249 21430 5 25 12 42 0.0 Metatranscriptome 3300046302 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_6_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046302 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 64797464 106269 4 1 29 2 Restricted 102.35 Metatranscriptome 3300016796 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean grown at 7 C, 34.25 psu salinity and 124 ?mol photons light - unclassified eukaryote Undescribed (MMETSP1317) National Center for Genome Resources 3300016796 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Sediment marine 120.06 -34.175 11390682 19908 140 35 261 57 0.0 Metatranscriptome 3300028852 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Asn2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028852 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 64818802 127070 8 9 176 51 SRX5356126 Unrestricted 86.8 Metatranscriptome 3300009746 *Microbiome Permanent Draft Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling - T6-HHNH4 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009746 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes milachis@u.washington.edu Ludmila Chistoserdova No Engineered Modeled Plant nodule Simulated communities (microbial mixture) Unclassified Methane-oxidizing 47.6193 -122.2449 46777184 117153 0 0 404 6 SRX2525432 Unrestricted 0.0 Metatranscriptome 3300032457 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day9_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032457 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 38776571 64230 4 0 16 2 SRX6857983 Unrestricted 274.1 Metatranscriptome 3300009031 *Microbiome Permanent Draft Microbial communities from groundwater in Rifle, Colorado, USA Microbial communities from groundwater in Rifle, Colorado, USA - 3D_0.1um Lawrence Berkeley National Laboratory 3300009031 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 39.32 -107.46 1593196098 4041331 466 3 2993 35 0.0 Metatranscriptome 3300034480 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0R2 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300034480 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 64495153 144865 351 1094 7038 5104 SRX7572526 Unrestricted 0.0 Metatranscriptome 3300031098 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_186 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031098 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92030701 -106.94839471 77476684 178450 468 512 3222 2226 SRX8134327 Unrestricted 21.04 Metatranscriptome 3300031171 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_L6_4mM_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031171 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 30240666 46266 1 0 0 4 SRX6408413 Unrestricted 66.77 Metatranscriptome 3300043804 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_133 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043804 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 136852509 299722 167 347 6650 2018 Unrestricted 45.1 Metatranscriptome 3300003609 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_120m_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003609 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 11223085 27334 156 14 548 122 SRX1878027 Unrestricted 0.0 Metatranscriptome 3300016711 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Indian Ocean in L1 medium with seawater, 20 C, 33 psu salinity and 482 ?mol photons light - Madagascaria erythrocladioides CCMP 3234 (MMETSP1450) National Center for Genome Resources 3300016711 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -13.3836 48.3388 30878124 46648 35 10 67 11 0.0 Metatranscriptome 3300048708 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-31 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048708 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4056 -64.9059 30628588 68836 250 59 547 1323 Unrestricted 28.92 Metatranscriptome 3300009599 *Microbiome Permanent Draft Marine eukaryotic communities from various locations to study complex ecological interactions Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M1_3um Metatranscriptome (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009599 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes azworden@mbari.org; twoyke@lbl.gov Alexandra Worden; Tanja Woyke No Environmental Aquatic Oceanic Marine Unclassified Marine 36.754 -122.0208 608116149 1146670 156 47 533 917 SRX7203897 Unrestricted 0.0 Metatranscriptome 3300019163 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Soil microbial communities from Bohemian Forest, Czech Republic - CSI2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019163 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 49.044 13.617 11993970 25659 5 123 477 869 SRX3937173, SRX5229542 Unrestricted 0.0 Metatranscriptome 3300030601 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Db3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030601 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 301654540 713181 131 153 1979 840 SRX4547302 Unrestricted 0.0 Metatranscriptome 3300017309 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 15 C, 31 psu salinity and 375 ?mol photons light - Alexandrium catenella OF101 (MMETSP0790) National Center for Genome Resources 3300017309 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 61947081 99430 5 1 5 1 0.0 Metatranscriptome 3300032732 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Shad11_26May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032732 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 935467806 1587828 7 3 32 165 SRX5803303 Unrestricted 0.0 Metatranscriptome 3300046038 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-17 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046038 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4257 -64.7745 27958343 69194 381 16 569 299 Unrestricted 14.56 Metatranscriptome 3300036581 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp02_R51 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036581 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 228876762 448857 517 72 1302 1034 SRX8837941 Unrestricted 36.49 Metatranscriptome 3300046106 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-126 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046106 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4479 -64.2031 106224028 241570 928 47 1551 866 Unrestricted 16.94 Metatranscriptome 3300030955 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E4_T_5 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030955 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 440567014 1584328 226 356 490 945 SRX3341223 Unrestricted 0.0 Metatranscriptome 3300009902 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 7, 6m depth; RNA IDBA-UD Marine Biological Laboratory 3300009902 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 6.53 2445386 7267 563 91 1206 367 0.0 Metatranscriptome 3300008880 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_3059 Massachusetts Institute of Technology 3300008880 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 6845012 23070 20 6 370 635 0.0 Metatranscriptome 3300028450 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 63 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028450 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 69237949 158017 92 132 2194 808 Unrestricted 237.95 Metatranscriptome 3300016910 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in ASW medium, at 20 C, 30 psu salinity and 572 ?mol photons light - Tryblionella compressa CCMP 561 (MMETSP0744) National Center for Genome Resources 3300016910 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 26631944 30040 3 4 1 4 0.0 Metatranscriptome 3300030777 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB5 SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030777 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7585 6.3578 887342979 2436057 9569 2454 20895 6921 SRX3351955 Unrestricted 0.0 Metatranscriptome 3300021865 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021865 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 34.87523 -13.13683 23199374 49912 71 86 192 314 SRX6381187 Unrestricted 0.0 Metatranscriptome 3300022366 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.437 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022366 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.27 -123.946 43459201 95333 334 1362 5180 5154 SRX4016348 Unrestricted 0.0 Metatranscriptome 3300059644 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 38R_AD_T1_R4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059644 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 269613199 677077 579 332 2872 2276 Unrestricted 48.02 Metatranscriptome 3300006594 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Ile_03_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006594 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 135578101 350298 284 178 1032 517 SRX3361120 Unrestricted 0.0 Metatranscriptome 3300016958 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater w/o silicate, 18 C, 20 psu salinity and 142 ?mol photons light - Emiliania huxleyi 374 (MMETSP1006) National Center for Genome Resources 3300016958 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 42.5 -69.0 17188796 23675 1 1 1 1 0.0 Metatranscriptome 3300017491 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from North Sea in half strength K medium with seawater and selenite, 20 C, 32 psu salinity and 293 ?mol photons light - Azadinium spinosum 3D9 (MMETSP1036_2) National Center for Genome Resources 3300017491 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 57.0525 2.50056 80155197 107381 0 1 2 1 0.0 Metatranscriptome 3300035570 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - 8D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035570 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.423 16.6683 56329807 112366 276 337 4039 1317 SRX8209010 Unrestricted 47.12 Metatranscriptome 3300019189 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Soil microbial communities from Bohemian Forest, Czech Republic - CSU3 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019189 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 49.0431 13.617 24788005 56336 10 243 925 1602 SRX3937182 Unrestricted 0.0 Metatranscriptome 3300045915 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P12SS CTRL_191116_f (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300045915 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 283532122 704852 143 227 1519 1276 SRX20649958 Unrestricted 54.99 Metatranscriptome 3300016873 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in modified f/2 media, 18 C, 32 psu salinity and 255 ?mol photons light - Vaucheria litorea CCMP 2940 (MMETSP0945) National Center for Genome Resources 3300016873 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh marine 12009075 16970 11 11 38 4 0.0 Metatranscriptome 3300021890 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-3M (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021890 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 107151681 183029 59 95 132 379 SRX5203103 Unrestricted 0.0 Metatranscriptome 3300047606 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_7_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047606 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 28504508 50862 2 0 16 0 Restricted 443.83 Metatranscriptome 3300012701 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES061 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012701 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.041 -89.686 129600316 227477 29 64 229 2203 SRX3010830 Unrestricted 0.0 Metatranscriptome 3300046133 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046133 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4048 -74.027 85323357 199863 760 57 1426 722 Unrestricted 19.81 Metatranscriptome 3300037012 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Metatranscriptome of forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_17 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037012 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 283574778 666870 14 145 489 588 SRX8240661 Unrestricted 63.33 Metatranscriptome 3300041400 *Microbiome Permanent Draft Diffuse flow microbial communities from hydrothermal vent near Loihi Seamount, Hawaii, USA Diffuse flow microbial communities from hydrothermal vent near Loihi Seamount, Hawaii, USA - MH3013C7 Marine Biological Laboratory 3300041400 Metatranscriptome Analysis IDBA-UD v. 1.1.3 released by JGI data releasing policy No Yes asmith@simons-rock.edu Amy Smith No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse Flow 19.42 -155.28 4116889 5506 0 0 0 0 0.0 Metatranscriptome 3300046540 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_1_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046540 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 39248879 65753 1 0 23 1 Restricted 128.16 Metatranscriptome 3300046641 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-46 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046641 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4354 -64.1145 91630133 217740 796 29 1318 355 Unrestricted 15.02 Metatranscriptome 3300018684 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_085 - TARA_N000001034 (ERX1782225-ERR1712160) Canada's Michael Smith Genome Sciences Centre 3300018684 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -62.21 -49.2245 110700354 274235 65 9 143 166 0.0 Metatranscriptome 3300005414 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1300(2)_T MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005414 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 68039604 163808 49 1 235 2 SRX2521568, SRX2521569 Unrestricted 0.0 Metatranscriptome 3300028623 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_1_27_36m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028623 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 173517757 353603 224 78 2237 688 SRX5337973 Unrestricted 39.28 Metatranscriptome 3300019157 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLU3 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019157 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified Plant litter 49.0431 13.617 6158907 11435 27 399 727 2696 SRX3937010, SRX5229515 Unrestricted 0.0 Metatranscriptome 3300031478 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031478 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7416 -117.7042 26242914 51119 66 32 104 167 SRX5793965, SRX5793966 Unrestricted 0.0 Metatranscriptome 3300011080 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 53 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011080 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 99336539 226877 226 363 19875 2447 Unrestricted 0.0 Metatranscriptome 3300047615 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_3_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047615 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 73698860 109103 3 0 16 0 Restricted 109.23 Metatranscriptome 3300036347 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen2, Rep 3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036347 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 39740606 53175 6 0 45 2 SRX8382043 Unrestricted 149.47 Metatranscriptome 3300016774 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium with natural Eastern Pacific seawater, no silica (Eastern Pacific), at 21 C, 35 psu salinity and 628 ?mol photons light - Micromonas pusilla RCC 1614 (MMETSP1402) National Center for Genome Resources 3300016774 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 13970874 15310 5 1 7 1 0.0 Metatranscriptome 3300019068 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_132 - TARA_N000002414 (ERX1782336-ERR1711930) Canada's Michael Smith Genome Sciences Centre 3300019068 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 31.471 -159.101 14060040 32705 24 27 152 375 0.0 Metatranscriptome 3300005493 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0700 MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005493 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 57013531 138341 2283 266 7456 473 SRX2521786, SRX2521787 Unrestricted 0.0 Metatranscriptome 3300026390 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 3R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026390 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 51602355 108398 188 32 218 433 SRX4474443 Unrestricted 32.42 Metatranscriptome 3300016891 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in L1 medium with natural Eastern Pacific seawater, no silica (Eastern Pacific), 21 C, 35 psu salinity and 427 ?mol photons light - Micromonas pusilla CCMP 1723 (MMETSP1403) National Center for Genome Resources 3300016891 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 20012057 17762 3 1 5 1 0.0 Metatranscriptome 3300038914 *Microbiome Permanent Draft Yosemite high-elevation lakes metatranscriptomes Freshwater microbial communities from Upper Cathedral Lake in YNP, CA, USA - Y18-265 Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300038914 Metatranscriptome Analysis megahit v. 1.2.7 released by JGI data releasing policy No Yes eperezcoronel@ucmerced.edu Elisabet Perez Coronel No Environmental Aquatic Lake Freshwater Unclassified freshwater 37.85902778 -119.61555556 53492591 86987 79 206 228 463 0.0 Metatranscriptome 3300035614 *Microbiome Permanent Draft Sediment microbial communities from Lake Washington near Medina, WA, United States Metatranscriptome of methane-enriched sediment microbial communities from Lake Washington, WA, United States - HO-NA-3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035614 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment sediment 47.6215 -122.2558 102236941 171215 6 1 15 4 SRX8379889 Unrestricted 362.7 Metatranscriptome 3300042498 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_Cl14_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042498 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 49697901 63720 2 0 2 0 Unrestricted 299.23 Metatranscriptome 3300001230 *Microbiome Permanent Draft Estuarine microbial mat communities from Elkhorn Slough, Moss Landing, CA, that are H2-evolving and photosynthetic Estuarine microbial mat communities from Elkhorn Slough, Moss Landing, CA, USA - CR2B Metatranscriptome (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300001230 Metatranscriptome Analysis No Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer Yes 23190731 Environmental Aquatic Intertidal zone Marine Estuary Estuarine 36.8 -121.8 118529150 267442 8 2 26 16 SRX3311450 Unrestricted 0.0 Metatranscriptome 3300036422 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Omics09_030718 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036422 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 159541954 341250 887 79 1955 2038 SRX8834205 Unrestricted 19.65 Metatranscriptome 3300023681 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Metatranscriptome of mouse feces microbial communities from Columbus University, Ohio, United States - Sal1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023681 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Host-associated Mammals Large intestine Digestive system Fecal feces 40.0 -83.025 105655086 153433 10 2 1084 34 SRX4387556 Unrestricted 136.24 Metatranscriptome 3300018745 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_110 - TARA_N000001746 (ERX1782385-ERR1712134) Canada's Michael Smith Genome Sciences Centre 3300018745 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -2.0133 -84.589 140363469 331411 126 46 513 625 0.0 Metatranscriptome 3300021350 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021350 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.6907 -122.3448 540012713 1079125 1254 257 17820 14821 SRX4010497 Unrestricted 0.0 Metatranscriptome 3300037770 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - F19MarB (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037770 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4211 16.6688 52433279 103270 93 616 590 2212 SRX9166046 Unrestricted 32.66 Metatranscriptome 3300021911 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-132S (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021911 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 131125196 224430 32 39 62 111 SRX5203627 Unrestricted 0.0 Metatranscriptome 3300051850 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of lake water microbial communities from Sandhills, Nebraska, United States - NSL_Border_2017 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051850 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.79185 -102.53404 402406565 860563 209 175 1333 619 Unrestricted 160.41 Metatranscriptome 3300016816 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Mediterranean Sea in K medium, 20 C, 36 psu salinity and 301 ?mol photons light - Leptocylindrus aporus B651 (MMETSP0322) National Center for Genome Resources 3300016816 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 40.8083 14.25 21607929 22862 6 1 16 3 0.0 Metatranscriptome 3300031037 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_S2_5 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031037 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -38.0 -45.0 660930939 2358609 301 600 544 1635 SRX3342223 Unrestricted 0.0 Metatranscriptome 3300003552 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - QV1.2_AUG13 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003552 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 23717608 51288 12 7 118 74 SRX3331177 Unrestricted 0.0 Metatranscriptome 3300004528 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 76_LOW10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004528 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 22647833 55261 131 15 607 35 SRX2780160 Unrestricted 0.0 Metatranscriptome 3300010879 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 3A (Eukaryote Community Metatranscriptome) (version 8) (version 8) DOE Joint Genome Institute (JGI) 3300010879 Metatranscriptome Analysis rnaSPAdes v. 0.1.1 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 787735806 1811333 4799 692 12016 1513 SRX2752796 Unrestricted 0.0 Metatranscriptome 3300003287 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 83 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003287 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 4637232 13640 21 60 389 313 Unrestricted 0.0 Metatranscriptome 3300002663 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF111 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002663 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.180244 6447463 18021 88 407 472 1956 SRX2014403 Unrestricted 0.0 Metatranscriptome 3300012734 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES144 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012734 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 252191027 517429 76 187 793 3659 SRX3011204 Unrestricted 0.0 Metatranscriptome 3300030695 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under control temperature from Pennsylvania, USA - 23_T1E_2612KB8 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030695 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 61952949 92163 0 5 35 508 SRX4646388 Unrestricted 0.0 Metatranscriptome 3300003569 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA Grassland soil microbial communities from Hopland, California, USA - Sample H2_Bulk_36 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003569 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes pettridge2@llnl.gov, nuccio1@llnl.gov; pettridge2@llnl.gov Jennifer Pett-Ridge, Erin Nuccio; Jennifer Pett-Ridge No Environmental Terrestrial Grasslands Soil Bulk soil Avena fatua rhizosphere 38.972988 -123.116539 58468682 174705 157 94 351 865 SRX2563594 Unrestricted 0.0 Metatranscriptome 3300007326 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S7 Surf_A metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007326 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 133689909 410085 1113 2056 3075 8251 SRX3196612 Unrestricted 0.0 Metatranscriptome 3300052440 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 36-S49Day7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052440 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 110413632 217772 26 2 97 6 Unrestricted 86.91 Metatranscriptome 3300006576 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006576 Metatranscriptome Analysis megahit v. 0.2.0 No Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil 45.54 -73.72 659057583 2329721 131 131 289 365 SRX2521907 Unrestricted 0.0 Metatranscriptome 3300010164 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 61 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010164 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 37320854 99202 7081 3655 22566 5757 Unrestricted 0.0 Metatranscriptome 3300017198 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 23 C, 0 psu salinity and 601 ?mol photons light - Rhodomonas salina CCMP 1319 (MMETSP1047) National Center for Genome Resources 3300017198 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 37503095 53585 1 9 2 9 0.0 Metatranscriptome 3300019228 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT790_16_1Ra (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019228 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9225 -106.9514 182847249 430877 193 923 10029 6119 SRX4810382 Unrestricted 0.0 Metatranscriptome 3300030561 *Microbiome Permanent Draft Metatranscriptome of decayed wood fungal communities from Pinus contorta in National Forests from Montana, United States Metatranscriptome of decayed wood fungal communities from Pinus contorta in Tenderfoot Creek Experimental Forest, Montana, United States - TCEF2-2W (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030561 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes dcullen@wisc.edu Daniel Cullen No Host-associated Plants Stem Phyllosphere Wood decay decayed wood 46.9233 -110.8694 69126819 141535 11 2 14 17 SRX4804393 Unrestricted 0.0 Metatranscriptome 3300010247 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1800 MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010247 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 80585224 156730 1219 106 13902 518 SRX2521849, SRX2521848 Unrestricted 0.0 Metatranscriptome 3300017071 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in Aquil nutrients amended seawater with alpha-glycerophosphate, at 20 C, 35 psu salinity and 720 ?mol photons light - Emiliania huxleyi PLY M219 (MMETSP1151) National Center for Genome Resources 3300017071 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 30136757 40800 22 4 31 4 0.0 Metatranscriptome 3300037653 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_N3_C1_D4_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037653 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 25439961 47836 166 323 1816 827 SRX9385148 Unrestricted 289.21 Metatranscriptome 3300007588 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_D4R_HD (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007588 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 40765399 131479 9093 3812 27627 8677 SRX3197610 Unrestricted 0.0 Metatranscriptome 3300052761 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_67 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052761 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 65952823 175984 84 110 542 641 Unrestricted 93.68 Metatranscriptome 3300031114 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031114 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92029772 -106.94875926 783043595 1783530 693 597 3077 2859 SRX8134317 Unrestricted 15.92 Metatranscriptome 3300031193 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_D6_0mM_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031193 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 7881589 13449 4 0 3 7 SRX5783604 Unrestricted 31.2 Metatranscriptome 3300051611 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 168_50_9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051611 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 56071808 149367 230 197 1443 1233 Unrestricted 150.37 Metatranscriptome 3300018723 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_046 - TARA_N000000268 (ERX1782137-ERR1712170) Canada's Michael Smith Genome Sciences Centre 3300018723 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -0.6625 73.161 145343635 327224 142 58 621 686 0.0 Metatranscriptome 3300012760 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Croche, Canada - C_130709_M_mt (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012760 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.8319 -72.5 123376146 254998 342 110 1650 4551 SRX3015160 Unrestricted 0.0 Metatranscriptome 3300032463 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red4_24May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032463 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 1149376400 1916320 10 11 31 174 SRX6410109 Unrestricted 19.45 Metatranscriptome 3300048968 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 56 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048968 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.6663 -82.0816 43937666 93375 116 44 281 300 Restricted 24.09 Metatranscriptome 3300002689 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_165m_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002689 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 37962238 82335 45 44 607 516 Unrestricted 0.0 Metatranscriptome 3300006314 *Microbiome Permanent Draft Prairie soil microbial communities from Kansas, USA, after rainfall Prairie soil microbial communities from Kansas, USA, after rainfall - K01 Oregon State University 3300006314 Metatranscriptome Analysis VELVET 1.2.10, combine 23, 27, 31 released per JGI data release policy No Yes lzeglin@ksu.edu Lydia Zeglin No Environmental Terrestrial Unclassified Soil Grasslands Prairie soil 39.1038 -96.6133 98162157 532394 49 12 203 43 0.0 Metatranscriptome 3300037682 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Metatranscriptome of lab enriched marine microbial communities from Marineland, Florida, USA - SW_R1_TP0 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037682 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6475 -82.3464 526618113 1045495 618 195 2419 1014 SRX9142270 Unrestricted 28.12 Metatranscriptome 3300003246 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment ColumnT-10K4-90 454 Life Sciences 3300003246 Metatranscriptome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.342219 40.479289 6-8 0 0 0 0 0 0 0.0 Metatranscriptome 3300043831 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA4 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043831 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Unclassified Soil Unclassified soil 35.7877 -78.6442 66841929 141133 160 291 2256 2103 Unrestricted 35.46 Metatranscriptome 3300030634 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cb1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030634 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 534015561 1117898 308 403 2888 1573 SRX4547033 Unrestricted 0.0 Metatranscriptome 3300011305 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 10 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011305 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 64937832 152807 170 1048 10443 3498 Unrestricted 0.0 Metatranscriptome 3300016698 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Metatranscriptome of peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin02_30_metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016698 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 171142809 405036 139 238 10139 1396 SRX3204063 Unrestricted 0.0 Metatranscriptome 3300006393 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006393 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 217882276 641666 1349 8560 2976 19104 SRX3196555 Unrestricted 0.0 Metatranscriptome 3300036153 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp01_R11 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036153 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 126381665 257688 422 86 869 1694 SRX8835156 Unrestricted 39.49 Metatranscriptome 3300010130 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_4_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010130 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 82971057 197997 51 409 5902 4099 Unrestricted 0.0 Metatranscriptome 3300032643 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow Y-3 rumen fluid (Eukaryote Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032643 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 40.102108 -88.227299 88630052 164263 30 59 131 98 SRX5780885 Unrestricted 0.0 Metatranscriptome 3300053681 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T4_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053681 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 49698072 107516 26 6 186 31 Unrestricted 0.0 Metatranscriptome 3300008721 *Microbiome Permanent Draft Acid mine drainage (AMD) microbial communities from Richmond mine in California, USA Acid mine drainage (AMD) microbial communities of acidophilic biofilm from Richmond mine in California, USA - R3 GS0 University of California, Berkeley 3300008721 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes Yes 25361394 Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 5714228 11147 561 0 843 7 SRX327880 0.0 Metatranscriptome 3300021850 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.761 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021850 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.286 -124.052 25903554 56653 313 989 7827 3636 SRX4018592 Unrestricted 0.0 Metatranscriptome 3300048742 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Metatranscriptome of hydrothermal vent fluid microbial communities from North Pacific Ocean - A5006-deckB (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048742 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 9.838 -104.2914 36197580 82255 67 99 973 509 Unrestricted 73.46 Metatranscriptome 3300038447 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Metatranscriptome of marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_4000m_C2_0cm5cm (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038447 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.1948 -122.0383 177111471 392515 324 1628 1903 7280 SRX9141346 Unrestricted 55.06 Metatranscriptome 3300018809 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_065 - TARA_N000000981 (ERX1789406-ERR1719516) Canada's Michael Smith Genome Sciences Centre 3300018809 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -35.1808 26.2879 192052446 427911 1 19 1 97 0.0 Metatranscriptome 3300019006 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_025 - TARA_A100000394 (ERX1782339-ERR1711936) Canada's Michael Smith Genome Sciences Centre 3300019006 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.3888 19.3905 521742908 1037517 22 26 124 315 0.0 Metatranscriptome 3300048668 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-146 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048668 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4615 -64.2246 19281251 43007 196 51 488 1313 Unrestricted 29.54 Metatranscriptome 3300034814 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Metatranscriptome of Methylocaldum sp. 0917 culture communities from SDSU, California, USA - Exp#1 BR3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034814 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Engineered Lab culture Bacteria Culture media Unclassified defined medium 32.7717 -117.0735 9530940 14323 0 0 5 1 SRX8293072 Unrestricted 4400.8 Metatranscriptome 3300009341 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from the North Atlantic ocean - ACM17 University of Georgia 3300009341 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 42220838 120654 57 185 229 516 0.0 Metatranscriptome 3300012419 *Microbiome Permanent Draft Polar marine prokaryotic and eukaryotic communities from Antarctica during spring seasonal transition Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 24hr light incubation - RNA10.B_24.20151111 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012419 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bowmanjs@ldeo.columbia.edu Jeff Bowman Yes Environmental Aquatic Unclassified Marine Unclassified Polar marine -64.775 -64.053 638799266 1348271 705 359 7846 10940 SRX3379698 Unrestricted 0.0 Metatranscriptome 3300008686 *Microbiome Permanent Draft Food microbial communities from the fermentation process of Kimchi from South Korea Food microbial communities from the fermentation process of Kimchi from South Korea - J7 Chung-Ang Univiersity 3300008686 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Fermented vegetables Unclassified Fermented vegetables 28694776 79814 28 17 724 223 0.0 Metatranscriptome 3300019138 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_041 - TARA_N000000077 (ERX1782429-ERR1712131) Canada's Michael Smith Genome Sciences Centre 3300019138 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 14.5741 69.9988 315141105 603485 8 22 19 158 0.0 Metatranscriptome 3300052342 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of lake water microbial communities from Sandhills, Nebraska, United States - NSL_Island_2019 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052342 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@dbi.udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.7342 -102.4104 52970875 103910 14 12 88 96 Unrestricted 519.27 Metatranscriptome 3300049084 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_7 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300049084 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 79817298 181334 129 29 301 174 Unrestricted 17.84 Metatranscriptome 3300030934 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB3 Emin (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030934 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7184 6.3471 556269650 1439561 5176 1114 10087 3239 SRX3351286 Unrestricted 0.0 Metatranscriptome 3300030761 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLI4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030761 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 59.9992 10.7901 18692739 44275 157 194 482 898 SRX5351298 Unrestricted 0.0 Metatranscriptome 3300046245 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_2_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046245 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 60340231 100741 4 3 80 18 Restricted 240.21 Metatranscriptome 3300016998 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in Sonneborn's Paramecium medium, 20 C and 191 ?mol photons light - Filamoeba nolandi NC-AS-23-1 (MMETSP0413) National Center for Genome Resources 3300016998 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 34.22573 -77.94471 22580142 25728 7 1 15 1 0.0 Metatranscriptome 3300029979 *Microbiome Permanent Draft North Pond metatranscriptomes Metatranscriptome of crustal fluid microbial communities from North Pond, Mid-Atlantic Ridge, Atlantic Ocean - 1382A 2017 Marine Biological Laboratory 3300029979 Metatranscriptome Analysis IDBA-UD v. 1.1.2 released by JGI data releasing policy No Yes lmseyler@gmail.com Lauren Seyler No Environmental Aquatic Oceanic Marine Crustal Fluids Oceanic crustal fluids 22.75 -46.083 11612089 13700 3590 543 6727 862 0.0 Metatranscriptome 3300017612 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 18 C, 32 psu salinity and 532 ?mol photons light - Chaetoceros affinis CCMP 159 (MMETSP0088) (SRX549059-SRR1294445) National Center for Genome Resources 3300017612 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 16178347 36408 41 5 79 12 0.0 Metatranscriptome 3300024345 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 RNA GHGhigh gp2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024345 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -40.3794 175.6106 970674609 1903163 19 74 935 692 SRX4497763, SRX7509750 Unrestricted 0.0 Metatranscriptome 3300008647 *Microbiome Permanent Draft Microbial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean Microbial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean - J2-614-07 University of Michigan 3300008647 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vents 1372584 5869 921 12 1598 53 0.0 Metatranscriptome 3300030995 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Wood GP-3B (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030995 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr; dcullen@wisc.edu Francis M. Martin; Daniel Cullen No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 45.7589 -113.9119 247124630 687862 702 279 1221 523 SRX3344919 Unrestricted 0.0 Metatranscriptome 3300009562 *Microbiome Permanent Draft Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea North East Pacific Ocean microbial community - Bloomer_DOMexp_DOMadd_12hr_metatranscriptome Massachusetts Institute of Technology 3300009562 Metatranscriptome Analysis Greengenes NAST aligner, Ribosomal Database Project (RDP) naive Bayesian classifier released per JGI data release policy No Yes sarabc@mit.edu Sara Collins No Environmental Aquatic Epipelagic Marine Unclassified open ocean 23.214666 -159.136166 59718281 246977 27065 205 202097 1376 0.0 Metatranscriptome 3300008920 *Microbiome Permanent Draft Microbial communities of nutrient treated water from Blanes Bay, Barcelona, Spain Microbial communities of nutrient treated water from Blanes Bay, Barcelona, Spain - NA2 Sodertorn University 3300008920 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Bay water 41.666 2.8 17087757 66285 208 123 2380 1952 ERX1055476 0.0 Metatranscriptome 3300018523 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_083 - TARA_N000001377 (ERX1782163-ERR1712191) Canada's Michael Smith Genome Sciences Centre 3300018523 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -54.3739 -65.1342 17985905 37288 8 10 44 65 0.0 Metatranscriptome 3300031581 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - AG5_1286_33.1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031581 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 70.5467 -122.9077 158532192 330471 279 63 716 1380 SRX5651174 Unrestricted 27.02 Metatranscriptome 3300052695 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T2_4 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052695 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 212771910 366500 19 17 76 66 Unrestricted 0.0 Metatranscriptome 3300030960 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 1B (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030960 Metatranscriptome Analysis megahit v. 0.2.0 No Yes fmartin1954@me.com Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 239117362 735749 6678 1272 20075 6296 SRX2752650 Unrestricted 0.0 Metatranscriptome 3300009559 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 5, Depth 3m; RNA IDBA-UD Marine Biological Laboratory 3300009559 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 8.12 59201245 136224 866 855 3163 2672 0.0 Metatranscriptome 3300036279 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0606U02 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300036279 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8973 -97.0409 43192313 90642 241 615 4271 1849 SRX9140063, SRX9140064 Unrestricted 0.0 Metatranscriptome 3300023672 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZE5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023672 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 49.0448 13.618 21645659 50046 32 45 1286 377 SRX4455326 Unrestricted 25.17 Metatranscriptome 3300046223 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_5_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046223 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 75484107 130167 1 0 18 0 Restricted 196.15 Metatranscriptome 2228664019 *Microbiome Permanent Draft Termite hindgut microbial communities from Amitermes wheeleri in the Arizona desert and from Nasutitermes corniger in Florida, USA Nasutitermes corniger hindgut microbial communities from Florida, USA - 2 DOE Joint Genome Institute (JGI) 2228664019 Metatranscriptome Analysis Velvet (Newbler and Phrap were also used during co-assembly) No Yes phugenholtz@lbl.gov Phil Hugenholtz Yes 23593407 Host-associated Arthropoda: Insects Hindgut Digestive system Paunch/P3 segment Termite hindgut 26.135833 -80.129444 36853872 92185 30 0 237 0 0.0 Metatranscriptome 3300042022 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Metatranscriptome of estuary water microbial communities from Narragansett Bay, Rhode Island, USA - E2_negO2CPA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042022 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.9078 -71.5683 365987154 701971 267 49 580 465 SRX14873774 Unrestricted 34.99 Metatranscriptome 3300031010 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031010 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 59.9982 10.7894 66256109 171406 45 82 219 415 SRX5351831 Unrestricted 0.0 Metatranscriptome 3300011026 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 51 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011026 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 14946522 36703 34 94 3108 637 Unrestricted 0.0 Metatranscriptome 3300046619 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-47 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046619 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4354 -64.1145 82708762 197201 895 30 1295 482 Unrestricted 15.19 Metatranscriptome 3300031058 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031058 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92030701 -106.94839471 833026693 1923878 718 531 2629 2952 SRX8134325 Unrestricted 20.48 Metatranscriptome 3300017082 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in Aquil medium, 13 C, 21 psu salinity and 224 ?mol photons light - Ditylum brightwellii Pop1 (SS4) (MMETSP1062) National Center for Genome Resources 3300017082 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37949668 41435 22 15 48 14 0.0 Metatranscriptome 3300003299 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome C0912_C43A7_35 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003299 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.46 -122.78 28662964 72963 116 32 366 643 SRX2555050 Unrestricted 0.0 Metatranscriptome 3300037707 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of photosynthetic mat microbial communities from Octopus Spring, YNP, Wyoming, United States - 20090729 1000 sample t13cd (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037707 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 100571238 237122 1 0 36 0 SRX9381224 Unrestricted 186.52 Metatranscriptome 3300006367 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S5 DCM_A metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006367 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@mail.ubc.ca, shallam@interchange.ubc.ca Steven J Hallam, Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 109685365 318372 3464 2854 9984 11812 SRX3028900 Unrestricted 0.0 Metatranscriptome 3300016756 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in Yeast-Peptone-Dextrose Broth, at 25 C and 609 ?mol photons light - Debaryomyces hansenii J26 (MMETSP0235) National Center for Genome Resources 3300016756 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 5444327 7489 0 2 0 1 0.0 Metatranscriptome 3300036171 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of phycosphere-associated microbial communities from LLNL, Livermore, CA, United States - Pt_6CLA_filter_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036171 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Phycosphere Diatoms Unclassified defined media 37.6818 -121.768 25509566 30192 3 1 4 42 SRX8240367 Unrestricted 104.03 Metatranscriptome 3300017324 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in L1 medium with seawater, 14 C, 33 psu salinity and 537 ?mol photons light - Gonyaulax spinifera CCMP 409 (MMETSP1439) National Center for Genome Resources 3300017324 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 43.8441 -69.6413 36218207 61080 1 1 2 1 0.0 Metatranscriptome 3300032625 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032625 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Unclassified Phyllosphere Unclassified phyllosphere 42.39 -85.37 450603434 829653 184 148 268 863 SRX7077714 Unrestricted 41.52 Metatranscriptome 3300030842 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB3 SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030842 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7184 6.3471 543132544 1523376 5213 2123 11187 5309 SRX3351956 Unrestricted 0.0 Metatranscriptome 3300032497 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow Y-2 rumen fluid (Eukaryote Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032497 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 40.102108 -88.227299 91054381 178625 35 49 131 93 SRX5780881 Unrestricted 0.0 Metatranscriptome 3300049693 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MT_220318 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049693 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 139891413 277181 18 13 216 35 Unrestricted 54.38 Metatranscriptome 3300055149 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP2.1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055149 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 94859502 203331 27 67 250 324 Unrestricted 141.73 Metatranscriptome 3300027369 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0946-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300027369 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 261806712 456282 15 13 20 43 SRX5244915 Unrestricted 94.66 Metatranscriptome 3300007232 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 10/23/14 A2 RNA (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007232 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ebyoung@uwm.edu Erica Young, Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 621204938 1666183 1651 1756 4615 7437 SRX5628722 Unrestricted 0.0 Metatranscriptome 3300010095 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_16_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010095 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 59056518 130853 46 399 2572 3842 Unrestricted 0.0 Metatranscriptome 3300049126 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 89 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049126 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.5186 -82.6406 6447660 12970 3 6 31 37 Restricted 120.92 Metatranscriptome 3300008539 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - D10.FECAL.14dpc CCME-COLORADO 3300008539 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 561474 2397 12 1 443 5 0.0 Metatranscriptome 3300008016 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Puerto Morelos, Mexico - Siderastrea C C metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300008016 Metatranscriptome Analysis megahit v. 0.2.0 No Yes momedinamunoz@gmail.com Monica _ Medina, Medina Medina No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral host 21.0853 -87.0617 327284908 503571 269 268 1130 768 SRX3362777 Unrestricted 0.0 Metatranscriptome 3300059679 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_19 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059679 Metatranscriptome Analysis megahit v. 2021-11-04 03:36:24 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 186924921 433026 233 61 626 278 Unrestricted 0.0 Metatranscriptome 3300018545 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_109 - TARA_N000001727 (ERX1789525-ERR1719314) Canada's Michael Smith Genome Sciences Centre 3300018545 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com Benjamin Tully No Environmental Aquatic Unclassified Marine Unclassified Marine 1.9928 -84.5766 14766561 64313 2 4 8 18 0.0 Metatranscriptome 3300013058 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Organic Plus compost microbial communities from Emeryville, California, USA - RNA 5th pass 37_C BE-Lig OP (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013058 Metatranscriptome Analysis megahit v. 1.0.6 No Yes jmgladden@lbl.gov John Gladden No Environmental, Engineered Terrestrial, Solid waste Composting Soil, Mixed feedstock Commercial compost compost 37.83 -122.29 36581096 78090 6 356 193 686 SRX4809047 Unrestricted 0.0 Metatranscriptome 3300012868 *Microbiome Permanent Draft Synthetic bacterial communities of pure cultures isolated from sediment of Lake Washington, USA Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under high oxygen condition - MT methane_oxidizing 14strains_48hour-b (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012868 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes milachis@u.washington.edu Ludmila Chistoserdova No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 47.6553 -122.3035 14805794 29952 4 0 916 2 SRX3015712 Unrestricted 0.0 Metatranscriptome 3300010117 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_4_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010117 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 72929481 172600 235 865 18960 6683 Unrestricted 0.0 Metatranscriptome 3300010060 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_2_0_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010060 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 16930772 40120 114 446 23122 3823 Unrestricted 0.0 Metatranscriptome 3300056956 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Vasterbotten County, Sweden - Sphagnum balticum 19C_BA_DE (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056956 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.183 19.5578 268290383 574373 352 190 916 817 Unrestricted 48.45 Metatranscriptome 3300017053 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium (10X Nitrate, 7X phosphorous), at 30 C, 38 psu salinity and 503 ?mol photons light - Tetraselmis striata LANL1001 (MMETSP0818) National Center for Genome Resources 3300017053 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 33739016 39327 2 1 3 1 0.0 Metatranscriptome 3300021949 *Microbiome Permanent Draft Anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States Metatranscriptome of anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States - LAC_MetaT_6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021949 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes alvarez@ce.berkeley.edu Lisa Alvarez-Cohen No Engineered Bioreactor Unclassified Anaerobic Unclassified anaerobic bioreactor biomass 37.8719 -122.2585 135407305 310844 5 12 950 68 SRX4020295 Unrestricted 0.0 Metatranscriptome 3300016749 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011512AT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016749 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 287815360 634245 112 333 2424 6877 SRX3780732 Unrestricted 0.0 Metatranscriptome 3300034186 *Microbiome Permanent Draft FORHOT Natural soil warming experiment in Iceland Soil microbial communities from grassland in Hveragerdi, Iceland - GN5-E University of Vienna 3300034186 Metatranscriptome Analysis rnaSPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes craig.herbold@microbial-ecology.net Craig Herbold No Environmental Terrestrial Unclassified Soil Grasslands Soil 64.025 -21.205 2066056634 8481411 258061 19990 1185007 81165 0.0 Metatranscriptome 3300004572 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 14_LOW5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004572 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 23263978 65653 2295 43 6912 135 SRX2779767 Unrestricted 0.0 Metatranscriptome 3300008826 *Microbiome Permanent Draft Microbial communities from mice foregut in Vienna, Austria Microbial communities from mice foregut in Vienna, Austria - lumen_rev_3 University of Vienna 3300008826 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Stomach Digestive system Forestomach Foregut of mice 13723021 47431 301 4 2222 29 SRX326450 0.0 Metatranscriptome 3300012755 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Montjoie, Canada - M_140807_E_mt (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012755 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.4091 -72.0994 98506935 216835 338 126 1772 7196 SRX3015269 Unrestricted 0.0 Metatranscriptome 3300030700 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen0, Rep 1, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300030700 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 65256056 63421 3 0 15 0 SRX5087084, SRX5087085 Unrestricted 0.0 Metatranscriptome 3300017545 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Great South Bay, New York in HESNW medium w/o silica, 18 C, 30 psu salinity and 514 ?mol photons light - Akashiwo sanguinea CCCM 885 (MMETSP0223_2) (SRX549075-SRR1294461) National Center for Genome Resources 3300017545 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 40.6666 -73.25 242534 828 0 7 1 13 0.0 Metatranscriptome 3300051598 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 48_100_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051598 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 196494752 499735 368 268 2424 1692 Unrestricted 40.05 Metatranscriptome 3300034678 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034678 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 252944636 597194 276 1099 4542 5301 SRX7520479, SRX9093904 Unrestricted 0.0 Metatranscriptome 3300030866 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 1A (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030866 Metatranscriptome Analysis megahit v. 0.2.0 No Yes fmartin1954@me.com Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 272926662 824119 4156 746 11323 3121 SRX2752649 Unrestricted 0.0 Metatranscriptome 3300031153 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_L6_0mM_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031153 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 18637704 30011 2 0 1 9 SRX6408414 Unrestricted 84.81 Metatranscriptome 3300019272 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101405AT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019272 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 423817430 957883 361 470 8315 5696 SRX3920932 Unrestricted 0.0 Metatranscriptome 3300046802 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Metatranscriptome of soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046802 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.3476 -119.2808 76183552 128564 51 2 140 43 Unrestricted 50.5 Metatranscriptome 3300052777 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_90 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052777 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 24460226 62902 84 104 341 534 Unrestricted 104.3 Metatranscriptome 3300006382 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006382 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 156256867 472719 7098 7259 15941 16195 SRX3196213 Unrestricted 0.0 Metatranscriptome 3300006713 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP1786 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006713 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 9.1206 -163.2969 96636903 292675 1266 689 3123 1698 SRX3326402 Unrestricted 0.0 Metatranscriptome 3300037614 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_M1_C1_D2_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037614 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 63316731 122490 342 1698 3150 4697 SRX9382760 Unrestricted 196.43 Metatranscriptome 3300021268 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States - R9.63.3A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021268 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 46.249 -123.986 19963883 49339 85 127 1514 6087 SRX4015215 Unrestricted 0.0 Metatranscriptome 3300017110 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, no silicate, 15 C, 29.4 psu salinity and 159 ?mol photons light - Heterosigma akashiwo NB (MMETSP0414) National Center for Genome Resources 3300017110 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Estuary marine 41.65583 -71.44778 23271136 43859 35 14 50 19 0.0 Metatranscriptome 3300017067 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 18 C, 32 psu salinity and 242 ?mol photons light - Heterosigma akashiwo CCMP 2393 (MMETSP0292) National Center for Genome Resources 3300017067 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 24536652 40645 14 8 18 14 0.0 Metatranscriptome 3300030577 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO131-ARE010SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030577 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.265 -71.2174 521166948 1094320 73 77 1430 468 SRX4011190 Unrestricted 0.0 Metatranscriptome 3300032438 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day14_7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032438 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 35662552 58002 8 0 22 2 SRX7582834 Unrestricted 269.72 Metatranscriptome 3300017158 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L/25 medium, at 18 C, 32 psu salinity and 474 ?mol photons light - Gephyrocapsa oceanica RCC 1303 (MMETSP1365) National Center for Genome Resources 3300017158 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 36926050 48073 2 2 1 2 0.0 Metatranscriptome 3300029280 *Microbiome Permanent Draft Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Sorghum rhizosphere microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B3.stcc.R1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300029280 Metatranscriptome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes colemanderr@gmail.com Devin Coleman-Derr No Host-associated Plants Rhizosphere Roots Unclassified sorghum rhizosphere 36.339058 -120.12031 31887832 52941 103 1261 1038 3524 0.0 Metatranscriptome 3300030901 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T29 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030901 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 34239620 65884 90 55 91 284 SRX5352484 Unrestricted 20.35 Metatranscriptome 3300004478 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 69 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004478 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 227332551 649017 6401 4559 28245 10396 Unrestricted 0.0 Metatranscriptome 3300037693 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen2, Rep 3, Chloramphenicol (Eukaryote Community Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037693 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 46754893 43512 4 1 13 6 SRX8381240, SRX8381239 Unrestricted 0.0 Metatranscriptome 3300006426 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_054 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006426 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Permafrost soil 68.6137 -149.3144 392520181 1125693 13346 6671 51847 15184 SRX2522024 Unrestricted 0.0 Metatranscriptome 3300020077 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300020077 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil corn rhizosphere 42.3948 -85.3738 528684676 1149243 421 2548 7002 24936 SRX4926815, SRX4926816 Unrestricted 0.0 Metatranscriptome 3300005482 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1900 MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005482 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 26706898 65075 1235 30 4012 73 SRX2740049, SRX2740050 Unrestricted 0.0 Metatranscriptome 3300018612 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_009 - TARA_X000001006 (ERX1782446-ERR1711922) Canada's Michael Smith Genome Sciences Centre 3300018612 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.0856 5.7927 88528138 167816 1 8 7 85 0.0 Metatranscriptome 3300008788 *Microbiome Permanent Draft Microbial communities of hydrothermal vent plumes from the Guaymas Basin in the Gulf of California Microbial communities of hydrothermal vent plumes from the Guaymas Basin in the Gulf of California - Plume GD6i University of Michigan 3300008788 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent in Guaymas Basin in the Gulf of California 71798817 238534 609 251 10511 3063 0.0 Metatranscriptome 3300009269 *Microbiome Permanent Draft Eukaryotic communities of water from Amazon river, Brazil and North Atlantic ocean Eukaryotic communities of water from the North Atlantic ocean - ACM28 University of Georgia 3300009269 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 305594930 887103 2 4 2 2 0.0 Metatranscriptome 3300019033 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_040 - TARA_N000000067 (ERX1782334-ERR1712080) Canada's Michael Smith Genome Sciences Centre 3300019033 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 17.4831 68.0026 610845457 1327348 51 56 226 800 0.0 Metatranscriptome 3300006230 *Microbiome Permanent Draft Marine sediment microbial communities from different distances from oil contamination, Gulf of Mexico Marine sediment microbial communities, 15.1 km from oil contamination, ambient, Gulf of Mexico - BC155 Yale Center for Genome Analysis 3300006230 Metatranscriptome Analysis idba_tran released per JGI data release policy No Yes phu@lbl.gov Ping Hu No Environmental Aquatic Oceanic Marine Oil-contaminated sediment Marine 28.3 -88.2 40049693 96785 1211 1592 10619 4549 0.0 Metatranscriptome 3300027945 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0494-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300027945 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 138488769 267086 6 60 2 64 SRX5256192 Unrestricted 199.86 Metatranscriptome 3300002775 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI074_165m_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002775 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 11120619 24497 21 10 262 146 Unrestricted 0.0 Metatranscriptome 3300016851 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in L1 medium with seawater, 20 C, 33 psu salinity and 562 ?mol photons light - Pycnococcus provasolii RCC 931 (MMETSP1459) National Center for Genome Resources 3300016851 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine -33.8667 -73.3333 11306403 14450 7 2 14 2 0.0 Metatranscriptome 3300042410 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_181 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042410 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 175029912 394585 104 198 4654 1007 Unrestricted 51.97 Metatranscriptome 3300031422 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_181 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031422 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92029772 -106.94875926 70945940 158196 468 505 3212 2935 SRX8133518 Unrestricted 24.17 Metatranscriptome 3300036572 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Metatranscriptome of soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_Dec_plot1_rep3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036572 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6539 -80.6288 84330825 190823 366 231 1684 1585 SRX8186776 Unrestricted 52.44 Metatranscriptome 3300009252 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from Amazon river, Brazil - RCM16 University of Georgia 3300009252 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic River Freshwater Unclassified River water 341763160 1134651 77 99 1249 698 SRX861662 0.0 Metatranscriptome 3300029644 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029644 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.3049 -116.2547 8298031 19268 233 505 758 1926 SRX5335949 Unrestricted 82.78 Metatranscriptome 3300052366 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_109 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052366 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 134159974 347809 343 44 384 258 Unrestricted 79.05 Metatranscriptome 3300009587 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_9_15_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009587 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment Wetland 41.2239 -82.3039 126408030 269280 643 1749 57019 14007 SRX2525189 Unrestricted 0.0 Metatranscriptome 3300017227 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in f/2 medium, 20 C, 21 psu salinity and 751 ?mol photons light - Striatella unipunctata CCMP 2910 (MMETSP0800) National Center for Genome Resources 3300017227 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 25696576 37970 35 3 71 4 0.0 Metatranscriptome 3300008380 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34703 J. Craig Venter Institute (JCVI) 3300008380 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 20310 21 0 0 0 0 0.0 Metatranscriptome 3300019197 *Microbiome Permanent Draft Roseovarius nubinhibens ISM and Alexandrium tamarense modeled microbial communities from the University of Georgia, USA Metatranscriptome of Roseovarius nubinhibens ISM and Alexandrium tamarense co-culture from University of Georgia, USA - T8_LowP_A metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019197 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes mmoran@uga.edu Mary Ann Moran No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Laboratory simulated co-culture 33.933 -83.366 22860222 83796 1 3 28 22 SRX3161825 Unrestricted 0.0 Metatranscriptome 3300016937 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater and 14nM iron, 19 C, 35 psu salinity and 618 ?mol photons light - Thalassiosira weissflogii CCMP 1010 (MMETSP1417) National Center for Genome Resources 3300016937 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.0 -65.0 31752815 31468 3 1 2 1 0.0 Metatranscriptome 3300007721 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS915_Marker113_RNA CLC_assembly Marine Biological Laboratory 3300007721 Metatranscriptome Analysis CLC genomics workbench, v. 7.0 released per JGI data release policy No Yes jhuber@mbl.edu, jhuber@whoi.edu Huber, Julie Huber No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse vent fluid, hydrothermal vents 45.9228 -129.9883 157023 335 9 3 33 3 0.0 Metatranscriptome 3300007178 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - OCT_C_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007178 Metatranscriptome Analysis megahit v. 0.2.0 No Yes binskeep@montana.edu, binskeep@montana.edu; jim.fredrickson@pnnl.gov William Inskeep, William P. Inskeep; Jim Fredrickson No Environmental Aquatic Unclassified Thermal springs Unclassified Thermal springs 44.534 -110.7978 62396224 176450 1749 54 10301 114 SRX2522148 Unrestricted 0.0 Metatranscriptome 3300000346 *Microbiome Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Ferric oxide microbial mat communities from Beowulf Spring, Yellowstone National Park, USA - T=65-68 DOE Joint Genome Institute (JGI) 3300000346 Metatranscriptome Analysis Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson Yes 26913020 Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Ferric oxide microbial mat 44.731451 -110.7113131 49953103 90260 35 1 52 0 0.0 Metatranscriptome 3300006264 *Microbiome Permanent Draft Prairie soil microbial communities from Kansas, USA, after rainfall Prairie soil microbial communities from Kansas, USA, after rainfall - K14 Oregon State University 3300006264 Metatranscriptome Analysis VELVET 1.2.10, combine 23, 27, 31 released per JGI data release policy No Yes lzeglin@ksu.edu Lydia Zeglin No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.1038 -96.6133 25801 157 2 1 4 0 0.0 Metatranscriptome 3300032077 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen9, Rep 2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032077 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 25123176 39873 4 0 37 1 SRX6409916 Unrestricted 28.05 Metatranscriptome 3300022655 *Microbiome Permanent Draft Anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States Metatranscriptome of anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States - LAC_MetaT_4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022655 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes alvarez@ce.berkeley.edu Lisa Alvarez-Cohen No Engineered Bioreactor Unclassified Anaerobic Unclassified anaerobic bioreactor biomass 37.8719 -122.2585 107287631 342645 4 16 1129 115 SRX4391792 Unrestricted 0.0 Metatranscriptome 3300019015 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_147 - TARA_N000002109 (ERX1789583-ERR1719280) Canada's Michael Smith Genome Sciences Centre 3300019015 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 33.0096 -66.547 858604378 1533411 3 74 14 306 0.0 Metatranscriptome 3300020104 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a, metaT Georgia Genomics Facility 3300020104 Metatranscriptome Analysis Trinity 2.06 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 28149483 95399 7204 964 16548 2682 0.0 Metatranscriptome 3300034382 *Microbiome Permanent Draft FORHOT Natural soil warming experiment in Iceland Soil microbial communities from grassland in Hveragerdi, Iceland - GO2-E University of Vienna 3300034382 Metatranscriptome Analysis rnaSPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes craig.herbold@microbial-ecology.net Craig Herbold No Environmental Terrestrial Unclassified Soil Grasslands Soil 64.025 -21.205 1618385479 6596033 319354 25472 1272983 62747 0.0 Metatranscriptome 3300030596 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO135-VCO085SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030596 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2469 -71.169 345436506 768175 100 96 2394 503 SRX4391353 Unrestricted 0.0 Metatranscriptome 3300030937 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A4_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300030937 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate/submediterranean forest 42.0 1.0 406410445 937744 295 162 8114 1540 SRX2999362 Unrestricted 0.0 Metatranscriptome 3300049087 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_19 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300049087 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 186924921 422655 233 61 626 278 Unrestricted 18.06 Metatranscriptome 3300006282 *Microbiome Permanent Draft Prairie soil microbial communities from Kansas, USA, after rainfall Prairie soil microbial communities from Kansas, USA, after rainfall - K07 Oregon State University 3300006282 Metatranscriptome Analysis VELVET 1.2.10, combine 23, 27, 31 released per JGI data release policy No Yes lzeglin@ksu.edu Lydia Zeglin No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.1038 -96.6133 3608415 20253 34 21 94 34 0.0 Metatranscriptome 3300046165 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Metatranscriptome of soil microbial communities from peatland in Alberta, Canada - SB-U-BARE 0-10 cm (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046165 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4621 -114.8803 22833769 52029 357 130 713 584 Unrestricted 144.74 Metatranscriptome 3300038444 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Metatranscriptome of marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_500m_C5_0cm2cm (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038444 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 37.0366 -121.2986 73958863 154651 211 1713 2342 7055 SRX9141340 Unrestricted 89.04 Metatranscriptome 3300035303 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R1103U20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035303 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0387 48436741 90538 124 449 2279 1204 SRX8235706 Unrestricted 52.22 Metatranscriptome 3300008785 *Microbiome Permanent Draft Microbial communities from wetland soil in Czech Republic Microbial communities from wetland soil in Czech Republic - R1_cDNA Friedrich Schiller University of Jena 3300008785 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Terrestrial Wetlands Soil Unclassified Wetland soil 50.14667 12.45083 108089037 508816 2020 1633 29526 9386 0.0 Metatranscriptome 3300034364 *Microbiome Permanent Draft Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S13 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034364 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes colin.averill@usys.ethz.ch Colin Averill No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 36.0 -78.0 64947504 125180 7 28 254 168 SRX7613701 Unrestricted 288.74 Metatranscriptome 3300046190 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-23 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046190 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4056 -64.9059 33066163 81290 429 27 773 276 Unrestricted 24.06 Metatranscriptome 3300041992 *Microbiome Permanent Draft Biological soil crust microbial communities from Mojave Desert, California, United States Metatranscriptome of biological soil crust microbial communities from Mojave Desert, CA, USA - LAC_S1_30min_MT_FICUS_504271 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300041992 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes erik@olemiss.edu Erik Hom No Environmental Terrestrial Soil crust Soil Unclassified biological soil crusts 34.1736 -115.3888 31311788 67081 244 161 1823 613 SRX14827034 Unrestricted 56.21 Metatranscriptome 3300032888 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_05JUN2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032888 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3951 -85.3736 27984871 47779 34 17 62 85 SRX7519524 Unrestricted 35.92 Metatranscriptome 3300018699 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_039 - TARA_N000000008 (ERX1782338-ERR1712211) Canada's Michael Smith Genome Sciences Centre 3300018699 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 18.5918 66.622 110881779 291613 15 8 124 202 0.0 Metatranscriptome 3300020096 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 2.7-0.2um, replicate b, metaT Georgia Genomics Facility 3300020096 Metatranscriptome Analysis Trinity 2.06 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 12407078 35207 3651 162 8314 280 0.0 Metatranscriptome 3300036475 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of sediment microbial communities from Prado wetlands, California, USA - CSM_Prado_Oct18_PM2_1.5z2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036475 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 106488397 216082 13 83 138 466 SRX8743591 Unrestricted 47.1 Metatranscriptome 3300019018 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_065 - TARA_N000000981 (ERX1789537-ERR1719348) Canada's Michael Smith Genome Sciences Centre 3300019018 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -35.1808 26.2879 678689836 1497027 1 59 7 224 0.0 Metatranscriptome 3300047665 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-214 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047665 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4604 -64.2162 114962611 269919 347 24 698 395 Unrestricted 15.74 Metatranscriptome 3300018702 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_131 - TARA_N000002354 (ERX1789558-ERR1719169) Canada's Michael Smith Genome Sciences Centre 3300018702 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 22.7901 -157.9439 105283919 292192 17 41 49 486 0.0 Metatranscriptome 3300025746 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepA_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300025746 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 102470614 208045 41 67 227 478 SRX4547610 Unrestricted 20.16 Metatranscriptome 3300022749 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Metatranscriptome of freshwater microbial communities from Pennsylvania, United States - DR:GLUT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022749 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Unclassified Freshwater 41.1553 -78.3938 30228324 52937 6 22 105 214 SRX4083163 Unrestricted 0.0 Metatranscriptome 3300019050 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_084 - TARA_N000001438 (ERX1782371-ERR1711865) Canada's Michael Smith Genome Sciences Centre 3300019050 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -60.2287 -60.6476 689775413 1630730 196 21 428 320 0.0 Metatranscriptome 3300022511 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-O (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022511 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 93609366 216535 579 773 10128 5774 SRX4402859 Unrestricted 0.0 Metatranscriptome 3300035630 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050630_2200_MSt3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035630 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 93758344 215094 2 1 67 5 SRX8243099 Unrestricted 228.91 Metatranscriptome 3300001214 *Microbiome Permanent Draft Estuarine microbial mat communities from Elkhorn Slough, Moss Landing, CA, that are H2-evolving and photosynthetic Estuarine microbial mat communities from Elkhorn Slough, Moss Landing, CA, USA - MR5A Metatranscriptome (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300001214 Metatranscriptome Analysis No Yes jim.fredrickson@pnnl.gov Jim Fredrickson Yes 23190731 Environmental Aquatic Intertidal zone Marine Estuary Estuarine 36.8 -121.8 64495511 167136 4 2 21 18 SRX3311483 Unrestricted 0.0 Metatranscriptome 3300030851 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030851 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7184 6.3471 551653177 1543260 7030 3043 14863 7700 SRX3349291 Unrestricted 0.0 Metatranscriptome 3300028252 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepA_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028252 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 93054822 181224 90 110 435 644 SRX5245752 Unrestricted 18.94 Metatranscriptome 3300008644 *Microbiome Permanent Draft Microbial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean Microbial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean - CTD-08-50 University of Michigan 3300008644 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vents 34277879 129075 2231 200 15928 1735 0.0 Metatranscriptome 3300047591 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_7_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047591 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 38905253 68179 1 0 13 7 Restricted 276.79 Metatranscriptome 3300007175 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S12 NT20 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007175 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 52656072 147255 1196 4046 3483 8297 SRX3196651 Unrestricted 0.0 Metatranscriptome 3300048950 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 27 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048950 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 42.4295 -81.2044 2448790 5593 4 3 29 25 Restricted 292.93 Metatranscriptome 3300017327 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from York River, Chesapeake Bay in f/2 medium with natural seawater and antibiotics, no silicate, 22 C, 21 psu salinity and 264 ?mol photons light - Kryptoperidinium foliaceum CCAP 1116/3 (MMETSP0118_2) National Center for Genome Resources 3300017327 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 69560069 104745 6 13 2 14 0.0 Metatranscriptome 3300051595 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 48_50_4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051595 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 42519384 116035 79 135 633 774 Unrestricted 144.63 Metatranscriptome 3300034675 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R1 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300034675 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 150659653 350974 374 1163 5814 5234 SRX7520397 Unrestricted 0.0 Metatranscriptome 3300019176 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019176 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 49.044 13.617 13291807 28522 14 181 541 1149 SRX3937222 Unrestricted 0.0 Metatranscriptome 3300006364 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006364 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 49645227 172566 12226 3032 37494 13122 SRX3195861 Unrestricted 0.0 Metatranscriptome 3300022596 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL T1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022596 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes momedinamunoz@gmail.com Medina Medina No Host-associated Invertebrates Coral Cnidaria Unclassified coral 9.1956 -82.1254 164397920 236203 109 86 473 1525 SRX3998602 Unrestricted 0.0 Metatranscriptome 3300006603 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006603 Metatranscriptome Analysis megahit v. 0.2.0 No Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil 45.54 -73.72 532776943 1987213 299 218 864 427 SRX2522019 Unrestricted 0.0 Metatranscriptome 3300016901 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Gulf of Mexico in f/2 medium with Eastern Pacific seawater, no silicate, 21 C, 35 psu salinity and 186 ?mol photons light - Prasinococcus capsulatus CCMP 1194 (MMETSP0941) National Center for Genome Resources 3300016901 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 23.0 -75.0 19856692 18898 4 1 10 1 0.0 Metatranscriptome 3300032413 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day2_9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032413 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 30705420 52358 14 0 73 1 SRX6856324 Unrestricted 63.29 Metatranscriptome 3300012710 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES041 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012710 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 143393209 287989 100 59 461 1931 SRX3010523 Unrestricted 0.0 Metatranscriptome 3300032726 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Plim7_28May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032726 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 764949043 1298934 23 5 39 183 SRX6411381 Unrestricted 0.0 Metatranscriptome 3300049529 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_A_2_control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049529 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 130231207 301217 208 126 1109 915 Unrestricted 89.86 Metatranscriptome 3300010980 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 corn stover (Eukaryote Community Metatranscriptome) (version 8) (version 7) DOE Joint Genome Institute (JGI) 3300010980 Metatranscriptome Analysis rnaSPAdes v. 0.1.1 No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 40.102108 -88.227299 682538344 1336141 121 593 385 1175 SRX5780594 Unrestricted 0.0 Metatranscriptome 3300012758 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Simoncouche, Canada - S_130626_E_mt (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012758 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.2311 -71.2508 114417179 247398 466 156 3634 5043 SRX3015290 Unrestricted 0.0 Metatranscriptome 3300050388 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T3_1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050388 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 156815732 273018 14 14 88 53 Unrestricted 103.51 Metatranscriptome 3300030610 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Ab2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030610 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 671650886 1415602 198 256 2795 1026 SRX4546936 Unrestricted 0.0 Metatranscriptome 3300041845 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_273 MetaT AgResearch, New Zealand, Mosgeil 3300041845 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 9324097 18711 63 95 689 148 0.0 Metatranscriptome 3300022373 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.180 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022373 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.27 -123.946 68319276 158499 255 1234 2599 4415 SRX4023079 Unrestricted 0.0 Metatranscriptome 3300030749 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E6_V_5 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030749 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 460489785 1488163 317 293 629 661 SRX3341608 Unrestricted 0.0 Metatranscriptome 3300010114 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_16_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010114 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 70420627 167760 108 576 19265 4828 Unrestricted 0.0 Metatranscriptome 3300049803 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Metatranscriptome of woodchip biofilm microbial communities from lab scale WBRs in New York, USA - hf_drw_p2_t8_h52_prok (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049803 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 75884649 175198 113 100 1248 536 Unrestricted 81.14 Metatranscriptome 3300003741 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_55_12L Marine Biological Laboratory 3300003741 Metatranscriptome Analysis CLC Genomics WB7 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 1764119 4209 50 5 196 9 0.0 Metatranscriptome 3300010193 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1300(2)_T MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010193 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 118916657 302613 29 1 336 2 SRX2521568, SRX2521569 Unrestricted 0.0 Metatranscriptome 3300018987 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_038 - TARA_N000000041 (ERX1789590-ERR1719255) Canada's Michael Smith Genome Sciences Centre 3300018987 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 19.0235 64.5256 283603344 906821 5 50 16 358 0.0 Metatranscriptome 3300016700 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Metatranscriptome of peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin17_30_metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016700 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 162431198 382809 128 297 12113 2024 SRX3204449 Unrestricted 0.0 Metatranscriptome 3300030658 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 36_T1F_3212EL1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030658 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 84846990 113880 1 2 52 325 SRX4646566 Unrestricted 0.0 Metatranscriptome 3300017155 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in Minimal Essential Medium with 10% fetal bovine serum, 23 C, 35 psu salinity and 183 ?mol photons light - unclassified eukaryote NY0313808BC1 (MMETSP0098) National Center for Genome Resources 3300017155 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 40.49657 -74.17591 32897888 33972 2 12 2 25 0.0 Metatranscriptome 3300031130 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031130 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 32191479 60291 60 25 93 217 SRX5351938 Unrestricted 20.38 Metatranscriptome 3300016866 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/4 medium with seawater, at 20 C, 34 psu salinity and 240 ?mol photons light - Paraphysomonas Imperforata PA2 (MMETSP0104) National Center for Genome Resources 3300016866 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 26813632 26778 22 2 36 1 0.0 Metatranscriptome 3300009352 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from Amazon river, Brazil - RCM18 University of Georgia 3300009352 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic River Freshwater Unclassified River water 50112240 155451 55 74 353 186 SRX863245 0.0 Metatranscriptome 3300041474 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover leaf microbial community from Lincoln, Canterbury, New Zealand - WCL17_5 MetaT AgResearch, New Zealand, Mosgeil 3300041474 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 6493253 11737 98 108 181 117 0.0 Metatranscriptome 3300004475 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 62 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004475 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 193715015 537001 7951 4886 32933 11212 Unrestricted 0.0 Metatranscriptome 3300052774 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_85 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052774 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 48994423 130556 105 126 526 759 Unrestricted 84.21 Metatranscriptome 3300018959 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_135 - TARA_N000002199 (ERX1789530-ERR1719318) Canada's Michael Smith Genome Sciences Centre 3300018959 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 32.9916 -121.8536 418371620 746601 0 18 1 94 0.0 Metatranscriptome 3300041669 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_16 MetaT AgResearch, New Zealand, Mosgeil 3300041669 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 34235645 75011 176 38 1160 129 0.0 Metatranscriptome 3300031055 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 3B (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031055 Metatranscriptome Analysis megahit v. 0.2.0 No Yes fmartin1954@me.com Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 117302482 378705 6237 873 13081 3741 SRX2752819 Unrestricted 0.0 Metatranscriptome 3300017030 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in NEPC medium, resuspended w/o nitrate, 20 C and 215 ?mol photons light - Asterionellopsis glacialis CCMP 134 (MMETSP0707) National Center for Genome Resources 3300017030 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 32.655 -117.14 26692564 29048 19 3 24 4 0.0 Metatranscriptome 3300018548 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS695_3p0 J. Craig Venter Institute (JCVI) 3300018548 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 4643463 15510 65 50 436 1045 0.0 Metatranscriptome 3300054641 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_CO_0C1R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300054641 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0683 10.4331 116155720 296319 516 457 2240 2322 Unrestricted 52.98 Metatranscriptome 3300055341 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - m4.1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055341 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 82946934 182271 0 1 16 3 Unrestricted 231.39 Metatranscriptome 3300011366 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung A8 Metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300011366 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Fecal 38.04 -122.5 150885396 290847 21 22 3401 221 SRX3007452, SRX3007451 Unrestricted 0.0 Metatranscriptome 3300051250 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Frauenau, Bavaria, Germany - BW_CL_019R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051250 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.99839 13.359531 45921768 120753 202 236 1136 952 Unrestricted 143.1 Metatranscriptome 3300013055 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched backyard soil microbial communities from Emeryville, California, USA - RNA 3rd pass 30_C Kraft BY (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013055 Metatranscriptome Analysis megahit v. 1.0.6 No Yes jmgladden@lbl.gov John Gladden No Environmental Terrestrial Unclassified Soil Unclassified soil 37.83 -122.29 33430965 66653 31 117 247 2122 SRX3902002 Unrestricted 0.0 Metatranscriptome 3300041683 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_315 MetaT AgResearch, New Zealand, Mosgeil 3300041683 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 46973934 105684 471 120 2874 253 0.0 Metatranscriptome 3300049836 *Microbiome Permanent Draft Biofilm microbial communities of laboratory-scale, methanol-fed denitrifying cultures Lab-enriched, denitrifying biofilm microbial communities from a recirculating reactor in Laval, Quebec, Canada - Condition 4 Genome Quebec 3300049836 Metatranscriptome Analysis Trinity v. 2.9.1 No Yes richard.villemur@iaf.inrs.ca Richard Villemur No Engineered Bioreactor Unclassified Denitrification Unclassified Biofilm 45.54491579 -73.71990935 46099252 115330 97 5 295 15 0.0 Metatranscriptome 3300030756 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E6_T_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030756 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 577393492 1921948 430 332 772 765 SRX3341633 Unrestricted 0.0 Metatranscriptome 3300026419 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 30R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026419 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 142952887 224240 68 8 86 182 SRX4783589 Unrestricted 37.35 Metatranscriptome 3300022391 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.765 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022391 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.313 -123.997 268944022 640141 131 387 3183 1118 SRX4019715 Unrestricted 0.0 Metatranscriptome 3300016842 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in artificial seawater with 1% horse serum and 0.8% agar, 23 C, 25 psu salinity and 343 ?mol photons light - Aurantiochytrium limacinum ATCCMYA-1381 (MMETSP0959) National Center for Genome Resources 3300016842 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 9.53333 138.11667 22317243 25074 38 24 88 45 0.0 Metatranscriptome 3300030574 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Db1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030574 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 335841965 747258 248 298 2924 1230 SRX4547107 Unrestricted 0.0 Metatranscriptome 3300010098 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_4_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010098 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 56944917 134187 211 790 20606 6663 Unrestricted 0.0 Metatranscriptome 3300017064 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Sargasso Sea in H/2 medium with NH4Cl, 24 C, 32 psu salinity and 719 ?mol photons light - Rhizochromulina marina CCMP 1243 (MMETSP1173) National Center for Genome Resources 3300017064 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 32.0 -65.1667 24232872 30315 25 15 34 20 0.0 Metatranscriptome 3300010171 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0800_B MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010171 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 24936990 62002 3684 2 11495 34 SRX2521784, SRX2521785 Unrestricted 0.0 Metatranscriptome 3300037617 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_M1_C1_D3_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037617 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 35173625 66165 626 1773 9946 5279 SRX9382812 Unrestricted 151.91 Metatranscriptome 3300052891 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 120-S78Day63 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052891 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 157626709 326297 31 5 112 56 Unrestricted 49.19 Metatranscriptome 3300009584 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_9_15_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009584 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment Wetland 41.224 -82.304 103864871 214814 576 1870 43624 15321 SRX2525174 Unrestricted 0.0 Metatranscriptome 3300002676 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI074_135m_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002676 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 15781823 37924 32 25 241 345 Unrestricted 0.0 Metatranscriptome 3300004117 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF222 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004117 Metatranscriptome Analysis megahit v. 0.2.0 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.531427 -72.189946 92490415 343478 993 521 4450 2002 SRX2013930 Unrestricted 0.0 Metatranscriptome 3300027269 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0745-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300027269 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 246734235 408845 25 8 19 38 SRX5254450 Unrestricted 45.39 Metatranscriptome 3300051600 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 48_100_14 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051600 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 54246179 146807 218 233 1272 1343 Unrestricted 119.91 Metatranscriptome 3300048665 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-11 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048665 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4161 -64.8992 17428646 39201 214 40 472 1292 Unrestricted 25.79 Metatranscriptome 3300007332 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S9 Surf_A metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007332 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 119364426 364088 3465 1729 7820 4224 SRX3196622 Unrestricted 0.0 Metatranscriptome 3300046248 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_2_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046248 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 48501271 75475 51 100 504 457 Restricted 389.41 Metatranscriptome 3300016995 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Atlantic Ocean in F/2 medium with seawater with 0.4uM phosphorate, 14 C, 35 psu salinity and 357 ?mol photons light - Thalassiosira gravida GMp14c1 (MMETSP0494) National Center for Genome Resources 3300016995 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 41.92732 -67.85788 27698450 34272 2 1 5 2 0.0 Metatranscriptome 3300041724 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_278 MetaT AgResearch, New Zealand, Mosgeil 3300041724 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1829607 3786 84 65 522 109 0.0 Metatranscriptome 3300028100 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Atlam_RepB_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028100 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 146924205 295605 105 163 655 1001 SRX5245793 Unrestricted 22.06 Metatranscriptome 3300032821 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_15MAY2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032821 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.3757 67487334 113540 20 15 40 78 SRX7519523 Unrestricted 43.94 Metatranscriptome 3300056961 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Western Region, Iceland - Sphagnum teres H3_TE_ICE (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056961 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 254293591 510438 186 132 697 595 Unrestricted 53.14 Metatranscriptome 3300016960 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Ross Sea in L1 medium with seawater, 2 C, 33 psu salinity and 479 ?mol photons light - Eucampia antarctica CCMP 1452 (MMETSP1437) National Center for Genome Resources 3300016960 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -77.8333 163.0 16894062 23770 16 8 45 17 0.0 Metatranscriptome 3300006589 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Ile_02_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006589 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 105676123 277154 383 239 1520 656 SRX3360150 Unrestricted 0.0 Metatranscriptome 3300020107 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 900m, 2.7-0.2um, replicate a, metaT Georgia Genomics Facility 3300020107 Metatranscriptome Analysis Trinity 2.06 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 46195182 146482 8575 2232 18601 5732 0.0 Metatranscriptome 3300060342 *Microbiome Permanent Draft Sediment microbial communities from the PNNL SFA Hanford 300 Area, Columbia River, WA, USA Metatranscriptome of sediment microbial communities from POM Trap at the PNNL SFA Hanford 300 Area, Columbia River, WA, USA - A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300060342 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes eroden@geology.wisc.edu Eric Roden No Environmental Aquatic River Freshwater Sediment Sediment 46.467778 -119.464444 50849231 129247 418 468 1303 2035 Restricted 229.91 Metatranscriptome 3300006267 *Microbiome Permanent Draft Prairie soil microbial communities from Kansas, USA, after rainfall Prairie soil microbial communities from Kansas, USA, after rainfall - K22 Oregon State University 3300006267 Metatranscriptome Analysis VELVET 1.2.10, combine 23, 27, 31 released per JGI data release policy No Yes lzeglin@ksu.edu Lydia Zeglin No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.1038 -96.6133 89721 534 1 0 0 1 0.0 Metatranscriptome 3300019113 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS845_ls3 J. Craig Venter Institute (JCVI) 3300019113 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 47767476 171954 107 35 230 508 0.0 Metatranscriptome 3300010886 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS6_30_TP2_12L Marine Biological Laboratory 3300010886 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 70326 176 14 4 49 4 0.0 Metatranscriptome 3300016934 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater w/o silicate, 18 C, 20 psu salinity and 141 ?mol photons light - Emiliania huxleyi 374 (MMETSP1009) National Center for Genome Resources 3300016934 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 42.5 -69.0 15927962 22521 4 1 4 1 0.0 Metatranscriptome 3300016761 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in Yeast-Peptone-Dextrose Broth, at 25 C and 707 ?mol photons light - Debaryomyces hansenii J26 (MMETSP0233) National Center for Genome Resources 3300016761 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 9333321 9556 0 4 0 1 0.0 Metatranscriptome 3300030998 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3A (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030998 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dcullen@wisc.edu; francis.martin@inrae.fr Daniel Cullen; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 45.7589 -113.9119 828780552 2468887 22602 1039 37772 2459 SRX3342630 Unrestricted 0.0 Metatranscriptome 3300032476 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow Y-1 corn stover (Eukaryote Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032476 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 40.102108 -88.227299 166595535 321506 18 79 75 140 SRX5780732 Unrestricted 0.0 Metatranscriptome 3300037731 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Metataranscriptome of bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_014 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037731 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -19.6574 146.8351 464268705 1054777 5 82 104 258 SRX9161804 Unrestricted 14.59 Metatranscriptome 3300018840 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_039 - TARA_N000000013 (ERX1782199-ERR1712136) Canada's Michael Smith Genome Sciences Centre 3300018840 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 18.5743 66.5029 357287359 487690 6 19 20 109 0.0 Metatranscriptome 3300019194 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Soil microbial communities from Bohemian Forest, Czech Republic - CSE1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019194 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 49.043 13.6183 24858654 56202 9 129 593 986 SRX3937178 Unrestricted 0.0 Metatranscriptome 3300031632 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRI2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031632 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 59.9982 10.7894 12858505 21148 4 2 5 12 SRX5807948 Unrestricted 13.89 Metatranscriptome 3300017224 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Sea grown at 20 C, 30 psu salinity and 440 ?mol photons light - Ammonia sp. (MMETSP1384) National Center for Genome Resources 3300017224 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 45711740 60042 2 0 2 6 0.0 Metatranscriptome 3300003744 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_55_13H Marine Biological Laboratory 3300003744 Metatranscriptome Analysis CLC Genomics WB7 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 4454272 7288 50 3 261 7 0.0 Metatranscriptome 3300018925 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_102 - TARA_N000001662 (ERX1789484-ERR1719312) Canada's Michael Smith Genome Sciences Centre 3300018925 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -5.2537 -85.2221 397605201 820048 0 8 7 70 0.0 Metatranscriptome 3300008848 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_3024 Massachusetts Institute of Technology 3300008848 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 4478926 15084 13 5 306 546 0.0 Metatranscriptome 3300043810 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_16 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043810 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 136554926 316648 186 461 2253 2013 Unrestricted 43.99 Metatranscriptome 3300030593 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO145-ARE024SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030593 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2713 -71.2091 327918467 709948 49 63 996 389 SRX4011191 Unrestricted 0.0 Metatranscriptome 3300028543 *Microbiome Permanent Draft Lab enriched biofilm microbial communities from the Montreal Biodome aquarium denitrification system, Montreal, Canada Lab enriched biofilm microbial communities from the Montreal Biodome aquarium denitrification system, Montreal, Canada - optimal Genome Quebec 3300028543 Metatranscriptome Analysis Trinity Denovo v. 2.4.0. released by Villemur Richard No Yes richard.villemur@iaf.inrs.ca Richard Villemur No Engineered Lab enrichment Anaerobic media Defined media Unclassified Biofilm 45.5596 -73.5497 8 35158856 76158 55 5 121 9 0.0 Metatranscriptome 3300032745 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Shad8_28May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032745 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 1056766069 1776259 22 5 44 191 SRX6411413 Unrestricted 0.0 Metatranscriptome 3300010111 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_24_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010111 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 68567221 159504 96 588 11970 4659 Unrestricted 0.0 Metatranscriptome 3300037677 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen6, Rep 3, Chloramphenicol (Eukaryote Community Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037677 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 35300661 30829 7 0 13 7 SRX8381243, SRX8381244 Unrestricted 0.0 Metatranscriptome 3300020014 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011503CT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300020014 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 256022450 563042 154 488 2220 7155 SRX5638539 Unrestricted 0.0 Metatranscriptome 3300002590 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS903_30_12H 3300002590 Metatranscriptome Analysis released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 1547689 5313 26 4 35 9 0.0 Metatranscriptome 3300002691 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_135m_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002691 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 39179566 99332 132 61 687 888 Unrestricted 0.0 Metatranscriptome 3300041471 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover leaf microbial community from Lincoln, Canterbury, New Zealand - WCL17_4 MetaT AgResearch, New Zealand, Mosgeil 3300041471 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 3095061 5363 29 47 87 67 0.0 Metatranscriptome 3300031029 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Wood TCEFA (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031029 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dcullen@wisc.edu; francis.martin@inrae.fr Daniel Cullen; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 46.9233 -110.871944 617406210 1663667 5080 771 9539 1374 SRX3344927 Unrestricted 0.0 Metatranscriptome 3300038290 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_OW2_C1_D1_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038290 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 57210290 103284 465 2231 5767 6021 SRX9391570 Unrestricted 110.61 Metatranscriptome 3300019105 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_122 - TARA_N000001942 (ERX1782301-ERR1712219) Canada's Michael Smith Genome Sciences Centre 3300019105 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.9948 -139.2172 41963435 98317 6 28 36 166 0.0 Metatranscriptome 3300028286 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028286 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 247625206 521480 186 179 1602 2135 SRX5245736 Unrestricted 18.95 Metatranscriptome 3300046620 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-121 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046620 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4479 -64.2031 118759798 279389 883 41 1488 558 Unrestricted 16.3 Metatranscriptome 3300020093 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 250-2.7um, replicate a, metaT Georgia Genomics Facility 3300020093 Metatranscriptome Analysis Trinity 2.06 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 35003321 109520 8796 4021 19420 13246 0.0 Metatranscriptome 3300006361 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S5 AAIW_A metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006361 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@mail.ubc.ca, shallam@interchange.ubc.ca Steven J Hallam, Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 13486745 41946 1861 2375 3683 5161 SRX3028899 Unrestricted 0.0 Metatranscriptome 3300016904 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in Standard Aquil medium with 100 uM EDTA, 12 C, 32 psu salinity and 428 ?mol photons light - Skeletonema marinoi UNC1201 (MMETSP1428) National Center for Genome Resources 3300016904 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 48.816 -128.666 25887788 29488 6 2 13 2 0.0 Metatranscriptome 2222084002 *Microbiome Permanent Draft Subtropical soil microbial communities from Bundaberg Australia Subtropical soil microbial communities from Bundaberg Australia-sugarcane farm Australian Genome Research Facility 2222084002 Metatranscriptome Analysis released by Rhiannon Mondav No Yes r.mondav@uq.edu.au, rhiannon.mondav@gmail.com Rhiannon Mondav No Environmental Terrestrial Silt Soil Unclassified Subtropical soil -24.9 152.39 6.3 23861439 61944 27 0 1876 0 0.0 Metatranscriptome 3300037701 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Metatranscriptome of soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_July_plot3_rep2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037701 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6591 -80.6279 282264966 623676 814 510 6788 2842 SRX9139683 Unrestricted 51.84 Metatranscriptome 3300005245 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0600_T MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005245 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 45520978 109143 64 0 288 6 SRX2521485, SRX2521486 Unrestricted 0.0 Metatranscriptome 3300028247 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepC_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028247 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 25215426 53961 84 121 411 783 SRX5245741 Unrestricted 15.71 Metatranscriptome 3300032491 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red2_26May_deep (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032491 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 901967156 1544223 19 4 39 187 SRX6410041 Unrestricted 23.79 Metatranscriptome 3300028164 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0668-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028164 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 167507740 276797 15 18 7 84 SRX5253478 Unrestricted 82.5 Metatranscriptome 3300036177 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of sediment eukaryotic communities from Prado wetlands, California, USA - CSM_Prado_Oct18_PM_1.5z2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036177 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 117825418 222809 13 17 64 49 SRX8741375 Unrestricted 108.05 Metatranscriptome 3300033530 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_28AUG2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300033530 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3951 -85.3736 265502750 438823 146 97 253 545 SRX7706894 Unrestricted 32.35 Metatranscriptome 3300025743 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepC_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300025743 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 39471523 79378 31 26 112 192 SRX4547646 Unrestricted 17.82 Metatranscriptome 3300016889 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine sediment eukaryotic communities from Atlantic Ocean in seawater with wheat grains, 20 C, 35 psu salinity and 125 ?mol photons light - Vexillifera sp. DIVA3 564/2 (MMETSP0173_2) National Center for Genome Resources 3300016889 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Sediment marine sediment -26.64444 -35.24361 15097126 17702 75 3 136 4 0.0 Metatranscriptome 3300017000 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no nitrate, 14 C, 36 psu salinity and 450 ?mol photons light - Ditylum brightwellii GSO103 (MMETSP1005) National Center for Genome Resources 3300017000 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 49.654 -127.436 18557560 25775 6 4 4 6 0.0 Metatranscriptome 3300019173 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLE2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019173 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified Plant litter 49.044 13.617 10345409 20712 31 373 531 2193 SRX3937013, SRX5229517 Unrestricted 0.0 Metatranscriptome 3300043905 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA107 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043905 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Unclassified Soil Unclassified soil 35.7877 -78.6442 49686245 107683 131 290 1383 1851 Unrestricted 45.07 Metatranscriptome 3300006606 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006606 Metatranscriptome Analysis megahit v. 0.2.0 No Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil 45.54 -73.72 1005588137 3417468 190 31 458 89 SRX2522021 Unrestricted 0.0 Metatranscriptome 3300004762 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004762 Metatranscriptome Analysis megahit v. 0.2.0 No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 63413786 207955 1929 843 4201 4827 SRX2521092 Unrestricted 0.0 Metatranscriptome 3300032416 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day2_8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032416 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 65419640 103624 7 0 34 11 SRX6856323 Unrestricted 91.54 Metatranscriptome 3300021930 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S29 C1 B24 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021930 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 60.680077 -19.33984 125076889 257863 123 80 260 283 SRX5204706 Unrestricted 0.0 Metatranscriptome 3300023699 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 81R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023699 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 102724227 211959 29 17 318 625 SRX4475886 Unrestricted 23.37 Metatranscriptome 3300032723 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Shad8_26May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032723 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 688212561 1185937 16 5 22 116 SRX6411412 Unrestricted 0.0 Metatranscriptome 3300036292 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen9, Rep 3, Chloramphenicol (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036292 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 21100389 20984 0 0 0 0 SRX8381555, SRX8381556 Unrestricted 0.0 Metatranscriptome 3300017288 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 18 C, 32 psu salinity and 226 ?mol photons light - Prorocentrum minimum CCMP 1329 (MMETSP0053) National Center for Genome Resources 3300017288 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 65370788 93451 0 1 0 1 0.0 Metatranscriptome 3300030854 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB2 SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030854 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7184 6.3471 606348391 1819309 5857 2534 12070 7409 SRX3350487 Unrestricted 0.0 Metatranscriptome 3300008540 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.1ln.6.15dpc CCME-COLORADO 3300008540 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 1232669 5770 12 1 430 6 0.0 Metatranscriptome 3300047594 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_7_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047594 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 2321294 5456 1 0 19 0 Restricted 212.94 Metatranscriptome 3300032014 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen9, Rep 3, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032014 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 30260223 27844 0 1 0 0 SRX5359923, SRX5359922 Unrestricted 0.0 Metatranscriptome 3300018943 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_093 - TARA_N000001290 (ERX1789547-ERR1719206) Canada's Michael Smith Genome Sciences Centre 3300018943 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -34.0614 -73.1066 327074998 651132 2 17 6 110 0.0 Metatranscriptome 3300001211 *Microbiome Permanent Draft Contaminated soil microbial communities from Tipperary, Ireland, in a timber treatment facility Contaminated soil microbial communities from Tipperary, Ireland - pooled cDNA University of Liverpool 3300001211 Metatranscriptome Analysis released per JGI data release policy No Yes mardiana.mohd-ashaari@ucdconnect.ie Mardiana Mohd Ashaari No Environmental Terrestrial Unclassified Soil Contaminated Contaminated soil 52.512199 -8.226278 0 0 0 0 0 0 0.0 Metatranscriptome 3300023702 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 82R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023702 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 112750630 232147 53 18 418 662 SRX4476296 Unrestricted 27.14 Metatranscriptome 3300021875 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S30 C1 B23 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021875 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 61.710326 -20.490256 38673811 86302 37 36 93 122 SRX5204705 Unrestricted 0.0 Metatranscriptome 3300034448 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_115 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034448 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.91721605 -106.9559947 36058979 84770 324 246 1253 1022 SRX8239219 Unrestricted 50.64 Metatranscriptome 3300030767 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T26 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030767 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 27059045 52276 38 34 77 189 SRX5352482 Unrestricted 20.85 Metatranscriptome 3300010196 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1200_T MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010196 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 120327145 319445 29 1 350 6 SRX2521573, SRX2521572 Unrestricted 0.0 Metatranscriptome 3300049806 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MT_240817 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049806 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 137786989 280769 13 7 182 12 Unrestricted 45.21 Metatranscriptome 3300035595 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - May L (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035595 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4327 16.6819 100413765 209168 100 205 954 816 SRX8210275 Unrestricted 53.3 Metatranscriptome 3300053687 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T3_4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053687 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 38834393 75014 16 0 128 15 Unrestricted 0.0 Metatranscriptome 3300016863 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Sea in K medium, 15 C, 35 psu salinity and 667 ?mol photons light - Florenciella parvula RCC 1693 (MMETSP1323) National Center for Genome Resources 3300016863 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 59.31666667 4.31666667 16302589 26533 8 1 17 1 0.0 Metatranscriptome 3300026504 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 46R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026504 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 268913061 525657 103 28 126 233 SRX4795997 Unrestricted 21.35 Metatranscriptome 3300008919 *Microbiome Permanent Draft Microbial communities of nutrient treated water from Blanes Bay, Barcelona, Spain Microbial communities of nutrient treated water from Blanes Bay, Barcelona, Spain - NA1 Sodertorn University 3300008919 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Bay water 41.666 2.8 51765255 181446 418 266 3539 2539 ERX1055475 0.0 Metatranscriptome 3300008038 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Puerto Morelos, Mexico - Orbicella C B metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300008038 Metatranscriptome Analysis megahit v. 0.2.0 No Yes momedinamunoz@gmail.com Monica _ Medina, Medina Medina No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral host 20.9047 -86.8367 411473153 686102 256 705 846 1686 SRX3362324 Unrestricted 0.0 Metatranscriptome 3300053662 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T1_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053662 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 90476161 182367 55 30 185 130 Unrestricted 0.0 Metatranscriptome 3300032071 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen9, Rep 3, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300032071 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 24002079 26067 0 0 1 1 SRX5359923, SRX5359922 Unrestricted 0.0 Metatranscriptome 3300036415 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of sediment microbial communities from Prado wetlands, California, USA - CSM_Prado_Oct18_AM3_0.5z2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036415 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 75075256 140164 63 236 802 1103 SRX8771225 Unrestricted 27.83 Metatranscriptome 3300037734 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_OW2_C1_D2_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037734 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 83728972 163990 489 2529 4114 6160 SRX8889698 Unrestricted 146.33 Metatranscriptome 3300019078 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_083 - TARA_N000001380 (ERX1809750-ERR1740119) Canada's Michael Smith Genome Sciences Centre 3300019078 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -54.3826 -65.051 29504454 56297 3 12 6 45 0.0 Metatranscriptome 3300017489 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Gulf of Mexico in f/2 medium with artificial seawater w/o silicate, 18 C, 28 psu salinity and 318 ?mol photons light - Lingulodinium polyedrum CCMP 1738 (MMETSP1032) National Center for Genome Resources 3300017489 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 27.8 -97.13 78941632 106757 16 1 30 1 0.0 Metatranscriptome 3300016764 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in Yeast-Peptone-Dextrose Broth, at 25 C and 287 ?mol photons light - Debaryomyces hansenii J26 (MMETSP0232) National Center for Genome Resources 3300016764 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 10751901 9759 0 2 0 2 0.0 Metatranscriptome 3300016931 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine sediment eukaryotic communities from Great South Bay, New York in artificial seawater with 0.125% Artemia detritus and 0.8% agar, 23 C, 25 psu salinity and 180 ?mol photons light - Aplanochytrium stocchinoi GSBS06 (MMETSP1349) National Center for Genome Resources 3300016931 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Sediment marine sediment 40.7 -73.1 17594533 22253 4 4 7 3 0.0 Metatranscriptome 3300006708 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP1480 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006708 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -28.41 179.14 79525674 275586 2254 4416 6382 10513 SRX3299448 Unrestricted 0.0 Metatranscriptome 3300017221 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in Ukeles E medium, at 18 C, 15 psu salinity and 723 ?mol photons light - Tetraselmis chuii PLY429 (MMETSP0491_2) National Center for Genome Resources 3300017221 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 28430593 37388 1 1 1 1 0.0 Metatranscriptome 3300019191 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - R.880 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019191 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.217 -123.78 69013454 146942 102 299 586 5548 Unrestricted 0.0 Metatranscriptome 3300053659 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T2_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053659 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 150286429 301042 83 42 284 200 Unrestricted 0.0 Metatranscriptome 3300033604 *Microbiome Permanent Draft Phytoplankton bloom bacterial communities from coast of New Jersey, USA Phytoplankton bloom bacterial communities from coast of New Jersey, USA - 5 meters Michigan State University 3300033604 Metatranscriptome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy No Yes zehnp1jr@cmich.edu Jessica Zehnpfennig No Environmental Aquatic Coastal Marine Unclassified Phytoplankton bloom 37.8665611 -70.23155278 141397511 491221 743 264 1290 708 0.0 Metatranscriptome 3300007727 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS918_NRZ_RNA CLC_assembly Marine Biological Laboratory 3300007727 Metatranscriptome Analysis CLC genomics workbench, v. 7.0 released per JGI data release policy No Yes jhuber@mbl.edu, jhuber@whoi.edu Huber, Julie Huber No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse vent fluid, hydrothermal vents 45.9332 -129.995 334894 754 10 14 96 11 0.0 Metatranscriptome 3300030782 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 4B (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030782 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 381984844 976291 3730 399 9757 1346 SRX2752821 Unrestricted 0.0 Metatranscriptome 3300010007 *Microbiome Permanent Draft Black Band Disease transitions Microbial communities of stony corals with Black-band disease (BBD) from Carrie Bow Cay Field Station, Belize; BBD Transitions coral #4 sample T4 University of Maryland 3300010007 Metatranscriptome Analysis IDBA-Tran v1.1.1 released per JGI data release policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified marine 16.80288 -88.08213 17714981 50836 2 12 11 28 0.0 Metatranscriptome 3300031100 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_151 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031100 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92057636 -106.94874802 72255528 159907 845 463 2567 2384 SRX8133420 Unrestricted 24.28 Metatranscriptome 3300031559 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB4_937_33.10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031559 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 75.0007 -150.0027 168978619 350397 157 43 524 1372 SRX5651266 Unrestricted 0.0 Metatranscriptome 3300037025 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Omics02_030518 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037025 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 424449533 906414 768 66 1450 1444 SRX8834097 Unrestricted 23.02 Metatranscriptome 3300037806 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - F19MarM (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037806 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4316 16.6833 148583300 316638 184 910 846 2943 SRX9165751 Unrestricted 26.69 Metatranscriptome 3300010418 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS5_30_TP2_12H Marine Biological Laboratory 3300010418 Metatranscriptome Analysis CLC genomics wb7 released per JGI data release policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933 -130.014 746108 2246 50 5 57 10 0.0 Metatranscriptome 3300016857 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of freshwater eukaryotic communities from unknown location in freshwater, at 19 C, 0 psu salinity and 396 ?mol photons light - Climacostomum virens Stock W-24 (MMETSP1397) National Center for Genome Resources 3300016857 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 25064879 26152 24 20 56 43 0.0 Metatranscriptome 3300036433 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8CP15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036433 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 100452689 200836 368 1363 2278 4403 SRX8379636 Unrestricted 43.34 Metatranscriptome 3300032405 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day7_7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032405 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 32356035 55795 13 0 46 3 SRX6857176 Unrestricted 162.07 Metatranscriptome 3300009581 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_9_15_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009581 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment Wetland 41.2239 -82.3039 87392551 178663 488 1546 37950 12796 SRX2525192 Unrestricted 0.0 Metatranscriptome 3300041686 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_34 MetaT AgResearch, New Zealand, Mosgeil 3300041686 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 58532261 128508 196 60 1608 121 0.0 Metatranscriptome 3300006300 *Microbiome Permanent Draft Prairie soil microbial communities from Kansas, USA, after rainfall Prairie soil microbial communities from Kansas, USA, after rainfall - K06 Oregon State University 3300006300 Metatranscriptome Analysis VELVET 1.2.10, combine 23, 27, 31 released per JGI data release policy No Yes lzeglin@ksu.edu Lydia Zeglin No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.1038 -96.6133 59489001 328792 27 7 97 23 0.0 Metatranscriptome 3300049833 *Microbiome Permanent Draft Biofilm microbial communities of laboratory-scale, methanol-fed denitrifying cultures Lab-enriched, denitrifying biofilm microbial community from biofilm cultures in Laval, Quebec, Canada - low salt McGill University and Genome Quebec Innovation Centre 3300049833 Metatranscriptome Analysis Trinity v. 2.9.1 No Yes richard.villemur@iaf.inrs.ca Richard Villemur No Engineered Bioreactor Unclassified Denitrification Unclassified Biofilm 45.54491579 -73.71990935 24373794 60036 33 3 78 3 0.0 Metatranscriptome 3300016730 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Metatranscriptome of peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin23_30_metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016730 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 304580183 680096 144 120 6465 857 SRX3204448 Unrestricted 0.0 Metatranscriptome 3300047622 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Metatranscriptome of beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - B1_CE1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047622 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.2552 -122.5085 42453039 90951 2 2 67 14 Restricted 45.82 Metatranscriptome 3300004787 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004787 Metatranscriptome Analysis megahit v. 0.2.0 No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 200304982 620545 4601 1327 11504 6027 SRX2518464 Unrestricted 0.0 Metatranscriptome 3300056964 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Western Region, Iceland - Sphagnum teres C3_TE_ICE (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056964 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 196011978 387095 134 90 404 384 Unrestricted 64.15 Metatranscriptome 3300041721 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_16 MetaT AgResearch, New Zealand, Mosgeil 3300041721 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 487641 992 6 2 12 4 0.0 Metatranscriptome 3300032824 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_26JUN2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032824 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.3757 151122006 263400 109 65 187 457 SRX7519619 Unrestricted 60.92 Metatranscriptome 3300041493 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_2 MetaT AgResearch, New Zealand, Mosgeil 3300041493 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Unclassified Roots Unclassified White clover root -43.648506 172.343549 10128298 17971 120 154 476 299 0.0 Metatranscriptome 3300002673 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF129 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002673 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 10432695 31131 185 659 782 2980 SRX2014425 Unrestricted 0.0 Metatranscriptome 3300012378 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_16_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012378 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 118972071 286332 121 686 6195 5971 Unrestricted 0.0 Metatranscriptome 3300020071 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-3 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300020071 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil corn rhizosphere 42.3948 -85.3738 7213148 19199 152 791 2119 1992 SRX4062849, SRX4062848 Unrestricted 0.0 Metatranscriptome 3300010869 *Microbiome Permanent Draft Forest soil eukaryotic communities from Alaska, USA, for a soil warming experiment in a boreal forest Boreal forest soil eukaryotic communities from Alaska, USA - W4-4 Metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010869 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes treseder@uci.edu Kathleen Treseder No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Boreal forest soil 63.883 -145.733 399989008 972129 182 562 8541 6517 SRX3007309 Unrestricted 0.0 Metatranscriptome 3300038148 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_M1_C1_D1_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038148 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 33892440 63983 586 1658 8879 5188 SRX9386046 Unrestricted 105.94 Metatranscriptome 3300011048 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 37 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011048 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 31933786 77678 89 207 6815 1246 Unrestricted 0.0 Metatranscriptome 3300017061 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in MLH medium with 10g/L glucose, double vitamins, at 27 C, 30 psu salinity and 658 ?mol photons light - Crypthecodinium cohnii Seligo (MMETSP0323_2) National Center for Genome Resources 3300017061 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 19241266 40534 7 1 7 2 0.0 Metatranscriptome 3300030670 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from Antarctic Ocean - PS103-23 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030670 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified marine -66.0031 -12.2867 831132573 1446614 21 3 26 107 SRX5356527 Unrestricted 0.0 Metatranscriptome 3300030571 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Dnb5 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030571 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 369582063 861138 125 197 2137 955 SRX4547307 Unrestricted 0.0 Metatranscriptome 3300046588 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - S1-R2-B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046588 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3555 19.0475 132980543 302154 218 180 703 626 Unrestricted 57.77 Metatranscriptome 3300010174 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1900_B MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010174 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 8590670 22846 1471 0 4478 9 SRX2521674, SRX2521675 Unrestricted 0.0 Metatranscriptome 3300049555 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A25_B_5_drought (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049555 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 7058949 17328 56 45 217 275 Unrestricted 1724.44 Metatranscriptome 3300029652 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S3_20-13C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029652 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.305 -116.2547 32296331 64269 78 250 1067 1180 SRX5336522 Unrestricted 57.43 Metatranscriptome 3300006085 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTD1200 RNA Marine Biological Laboratory 3300006085 Metatranscriptome Analysis CLC genomics wb7 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Unclassified Background water from Axial caldera 45.9332 -129.9988 1373407 5154 8 2 36 6 0.0 Metatranscriptome 3300030907 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Wood TCEFB (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030907 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr; dcullen@wisc.edu Francis M. Martin; Daniel Cullen No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 46.9233 -110.871944 721633393 1925571 4965 1023 9623 1648 SRX3344925 Unrestricted 0.0 Metatranscriptome 3300003579 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA Grassland soil microbial communities from Hopland, California, USA - Sample H4_Rhizo_45 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003579 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes pettridge2@llnl.gov, nuccio1@llnl.gov; pettridge2@llnl.gov Jennifer Pett-Ridge, Erin Nuccio; Jennifer Pett-Ridge No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.972988 -123.116539 121648384 367715 340 216 1328 1739 SRX2563671 Unrestricted 0.0 Metatranscriptome 3300012770 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Simoncouche, Canada - S_140625_E_mt (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012770 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.2311 -71.2508 169215690 356270 407 279 3016 4072 SRX3015312 Unrestricted 0.0 Metatranscriptome 3300046326 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_2_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046326 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 66747229 111655 10 70 300 392 Restricted 209.67 Metatranscriptome 3300043790 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_263 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043790 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 73187308 171396 179 267 1708 1466 Unrestricted 50.17 Metatranscriptome 3300049701 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Weichs, Bavaria, Germany - PB8_MT_250518 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049701 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 48.39537892 11.44760761 100591188 208341 6 11 155 12 Unrestricted 31.74 Metatranscriptome 3300052771 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_78B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052771 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Bulk soil Soil 38.992973 -123.067448 31615864 84327 50 101 478 546 Unrestricted 115.89 Metatranscriptome 3300004599 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 21 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004599 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 82555662 276686 3003 1445 11159 3242 Unrestricted 0.0 Metatranscriptome 3300021222 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from nest from French Guiana - FG16_17b_4 mRNA SA University of Luxembourg 3300021222 Metatranscriptome Analysis CLC Genomics Workbench Version 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 5.52083333 -53.13555556 32306971 118667 0 0 2 2 0.0 Metatranscriptome 3300035600 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R1105M12 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300035600 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0386 30025793 61640 357 867 4369 3307 SRX9139987, SRX9139988 Unrestricted 0.0 Metatranscriptome 3300029683 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_120m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029683 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 69443466 140573 105 15 2147 117 SRX5337985 Unrestricted 30.5 Metatranscriptome 3300018732 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_123 - TARA_N000001992 (ERX1789574-ERR1719298) Canada's Michael Smith Genome Sciences Centre 3300018732 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -8.9068 -140.283 132459393 339309 30 11 59 204 0.0 Metatranscriptome 3300017129 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater w/o silicate, 18 C, 20 psu salinity and 135 ?mol photons light - Emiliania huxleyi 379 (MMETSP0995) National Center for Genome Resources 3300017129 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 50.1669 -4.2504 23415063 33130 4 2 5 1 0.0 Metatranscriptome 3300019116 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_080 - TARA_N000001491 (ERX1782226-ERR1711967) Canada's Michael Smith Genome Sciences Centre 3300019116 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -40.6511 -52.182 134923600 347281 65 11 270 230 0.0 Metatranscriptome 3300048978 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 77 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048978 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.5186 -82.6406 6173786 12233 6 5 30 26 Restricted 82.67 Metatranscriptome 3300046066 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-166 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046066 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4757 -64.2279 39328594 95983 206 28 400 432 Unrestricted 32.4 Metatranscriptome 3300012729 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES157 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012729 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 190002040 390995 95 267 814 3400 SRX3527332 Unrestricted 0.0 Metatranscriptome 3300048830 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Metatranscriptome of sediment microbial communities from freshwater Prado Wetlands in Corona, California, USA - CSM_Prado_Oct18_AM_2.5z2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048830 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Wetlands Freshwater Sediment Sediment 33.919031 -117.617686 84157773 188330 53 136 1201 602 Unrestricted 49.23 Metatranscriptome 3300046585 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - S1-R1-A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046585 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3555 19.0475 140448182 313407 276 152 668 575 Unrestricted 35.04 Metatranscriptome 3300006088 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS907_Anemone_RNA Marine Biological Laboratory 3300006088 Metatranscriptome Analysis CLC genomics wb7 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse vent fluid, hydrothermal vents 45.9332 -130.0138 10314989 26530 37 10 90 16 0.0 Metatranscriptome 3300017170 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in K medium w/o silicate, at 23 C, 0 psu salinity and 613 ?mol photons light - Bigelowiella natans CCMP 1258.1 (MMETSP1055) National Center for Genome Resources 3300017170 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 36066965 48967 3 6 2 14 0.0 Metatranscriptome 3300019003 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_153 - TARA_N000002825 (ERX1789479-ERR1719182) Canada's Michael Smith Genome Sciences Centre 3300019003 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 44.0497 -16.6034 444377585 1017018 9 20 39 197 0.0 Metatranscriptome 3300012375 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_8_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012375 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 115299066 279042 112 730 6726 7196 Unrestricted 0.0 Metatranscriptome 3300008683 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - PM94.FECAL.14dpc CCME-COLORADO 3300008683 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 9953458 34648 43 3 610 9 0.0 Metatranscriptome 3300011045 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 66 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011045 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 29396562 70483 96 542 6161 1540 Unrestricted 0.0 Metatranscriptome 3300018981 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_084 - TARA_N000001440 (ERX1782157-ERR1712238) Canada's Michael Smith Genome Sciences Centre 3300018981 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -60.4016 -60.4488 389526485 852655 113 11 239 303 0.0 Metatranscriptome 3300008669 *Microbiome Permanent Draft Food microbial communities from the fermentation process of Kimchi from South Korea Food microbial communities from the fermentation process of Kimchi from South Korea - J13 Chung-Ang Univiersity 3300008669 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Fermented vegetables Unclassified Fermented vegetables 17580486 41251 26 5 547 91 0.0 Metatranscriptome 3300019212 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT25_16_1Ra (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019212 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9227 -106.9509 147554601 344125 165 1115 6448 8911 SRX4809199 Unrestricted 0.0 Metatranscriptome 3300035350 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0819S58 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035350 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0388 35382087 73702 217 41 6825 101 SRX8237452 Unrestricted 79.14 Metatranscriptome 3300034650 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_1600_MSt12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034650 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 159289957 395650 1 2 57 5 SRX8255466 Unrestricted 252.9 Metatranscriptome 3300018526 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_051 - TARA_N000000185 (ERX1782407-ERR1711866) Canada's Michael Smith Genome Sciences Centre 3300018526 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -21.4593 54.3041 14273891 38539 64 18 340 350 0.0 Metatranscriptome 3300040750 *Microbiome Finished Lab enriched marine microbial communities from the Bohai Gulf, China Lab enriched marine microbial communities from the Bohai Gulf, China - ANH Hebei Normal University of Science &Technology 3300040750 Metatranscriptome Analysis Trinity v. 2.4.0 released by Si Li No Yes jackeikee@aliyun.com Si Li No Environmental Aquatic Gulf Marine Unclassified Marine 38.26 118.24 87621799 163307 48 60 143 258 0.0 Metatranscriptome 3300048975 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 75 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048975 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.9364 -81.6542 786027 1584 6 0 19 30 Restricted 337.31 Metatranscriptome 3300030629 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO153-ARE093SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030629 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr; fmartin@nancy.inra.fr Francis M. Martin; Francis M. MARTIN No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.321 -71.0886 473922806 991273 74 59 1618 453 SRX4391330 Unrestricted 0.0 Metatranscriptome 3300017321 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Baffin Bay in ProV 50 medium with seawater and antibiotics, 6 C, 36 psu salinity and 185 ?mol photons light - unclassified eukaryote CCMP 2293 (MMETSP0989) National Center for Genome Resources 3300017321 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 78.5922 -74.4922 41953514 58968 5 9 11 16 0.0 Metatranscriptome 3300046430 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_22E_Control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046430 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1784 -81.3622 62888817 144249 418 289 2384 1709 Unrestricted 60.56 Metatranscriptome 3300049469 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_18 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300049469 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 394216742 875504 316 96 1023 392 Unrestricted 29.15 Metatranscriptome 3300008652 *Microbiome Permanent Draft Microbial communities of saline water collected from the North Sea in Germany Microbial communities of saline water collected from the North Sea in Germany - HE327_15 Goettingen Genomics Laboratory 3300008652 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified North sea 54.449 8.22 4177836 16283 348 416 1901 1773 0.0 Metatranscriptome 3300004512 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 98_LOW12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004512 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 11559178 25135 48 13 154 22 SRX2780167 Unrestricted 0.0 Metatranscriptome 3300016907 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Baffin Bay in L1 medium with seawater, 20 C, 33 psu salinity and 558 ?mol photons light - Entomoneis sp. CCMP 2396 (MMETSP1443) National Center for Genome Resources 3300016907 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 77.8333 -75.55 13746614 19799 1 7 1 8 0.0 Metatranscriptome 3300018780 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_135 - TARA_N000002187 (ERX1789624-ERR1719497) Canada's Michael Smith Genome Sciences Centre 3300018780 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 32.9903 -121.8463 122096892 387535 8 22 29 346 0.0 Metatranscriptome 3300011289 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S19 O2min_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011289 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 36621494 89306 57 42 6626 1662 SRX3787350 Unrestricted 0.0 Metatranscriptome 3300019075 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_132 - TARA_N000002400 (ERX1782374-ERR1711926) Canada's Michael Smith Genome Sciences Centre 3300019075 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 31.5024 -159.0393 21387394 46742 1 29 5 105 0.0 Metatranscriptome 3300047597 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_7_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047597 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 35878122 67188 2 0 19 1 Restricted 178.4 Metatranscriptome 3300030857 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_S5_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030857 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -28.25 -38.5 461254520 1652616 546 401 848 1158 SRX3342221 Unrestricted 0.0 Metatranscriptome 3300011023 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 29 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011023 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 13725856 33728 61 122 4717 776 Unrestricted 0.0 Metatranscriptome 3300046226 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_5_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046226 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 85576965 128476 1 0 26 1 Restricted 117.82 Metatranscriptome 3300010902 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS917_55_12C_TP1_INC3_10 Marine Biological Laboratory 3300010902 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 1309598 2501 36 6 119 4 0.0 Metatranscriptome 3300006705 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP547 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006705 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -26.95 -21.4 75206620 250539 2587 5324 6214 17488 SRX3299394 Unrestricted 0.0 Metatranscriptome 3300021322 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.298 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021322 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.286 -124.052 142286757 380235 68 560 1133 1489 SRX4016030 Unrestricted 0.0 Metatranscriptome 3300031149 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_D6_16mM_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031149 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 9848976 16008 0 0 1 5 SRX6408185 Unrestricted 31.11 Metatranscriptome 3300031465 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E5_S_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031465 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 641853928 1747157 544 244 1114 518 SRX3341578 Unrestricted 0.0 Metatranscriptome 3300010433 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS5_30_TP2_13H Marine Biological Laboratory 3300010433 Metatranscriptome Analysis CLC genomics wb7 released per JGI data release policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933 -130.014 436910 1142 14 7 66 11 0.0 Metatranscriptome 3300008035 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Puerto Morelos, Mexico - Orbicella T R B metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300008035 Metatranscriptome Analysis megahit v. 0.2.0 No Yes momedinamunoz@gmail.com Monica _ Medina, Medina Medina No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral host 20.9047 -86.8367 379223796 645690 229 481 620 1250 SRX3362335 Unrestricted 0.0 Metatranscriptome 3300032502 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032502 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Unclassified Phyllosphere Unclassified phyllosphere 42.39 -85.37 228682173 408843 49 48 77 336 SRX7077616 Unrestricted 83.01 Metatranscriptome 3300030730 *Microbiome Permanent Draft Hardwood forest soil microbial communities from various locations in the United States Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030730 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jdraff@indiana.edu Jonathan Raff No Environmental Terrestrial Temperate forest Soil Bulk soil hardwood forest soil 39.0844 -86.4705 483927943 1118236 54 436 132 2507 SRX6409986 Unrestricted 42.11 Metatranscriptome 3300016753 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater with Valine, Cholesterol and Ubiquinone, at 25 C, 18.5 psu salinity and 286 ?mol photons light - Oxyrrhis marina CCMP 1788 (MMETSP0044) National Center for Genome Resources 3300016753 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 541260 1971 1 5 3 4 0.0 Metatranscriptome 3300056982 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Frasne, France - Sphagnum fallax 6OTC_SF_FR (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056982 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 205832600 439168 251 141 535 671 Unrestricted 60.41 Metatranscriptome 3300031584 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_L6_32mM_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031584 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 19253753 29548 0 0 2 1 SRX5783510 Unrestricted 35.77 Metatranscriptome 3300031490 *Microbiome Permanent Draft Soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_R4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031490 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thb15@psu.edu Terrence Bell No Engineered Artificial ecosystem Surface biofilm Soil microcosm Unclassified soil 40.7997 -77.8629 23427689 45664 96 37 654 404 SRX5812406 Unrestricted 197.46 Metatranscriptome 3300050699 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae culture inoculated with mixed bacterial community from LLNL, Livermore, California, USA - f24_d5_A_S38 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050699 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 25972537 37015 4 0 4 4 Restricted 115.33 Metatranscriptome 3300039432 *Microbiome Permanent Draft Rumen fluid microbial communities from dairy cows in UC Davis, California, USA Metatranscriptome of rumen microbial communities from dairy cows in UC Davis, California, USA - UCD_Rumen_Seaweed_2634 (Metagenome Metatranscriptome) (FastSelect) (version 3) DOE Joint Genome Institute (JGI) 3300039432 Metatranscriptome Analysis MEGAHIT v. 1.2.9 Yes Yes bmroque@ucdavis.edu Breanna Roque No Host-associated Mammals Stomach Digestive system Rumen fluid rumen fluid 38.5368 -121.7595 136701702 280145 1 54 167 184 Unrestricted 0.0 Metatranscriptome 3300024482 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_0h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024482 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 183581569 371620 81 250 1034 1612 SRX4547665 Unrestricted 19.57 Metatranscriptome 3300008724 *Microbiome Permanent Draft Microbial communities of thrombolites from Highborne Cay, Bahamas Microbial communities of thrombolites from Highborne Cay, Bahamas - Zone1_mRNA University of Florida 3300008724 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Saline Non-marine Saline and Alkaline Microbial mats Microbial mats 24.72 -76.82 25119553 82296 705 613 10519 5603 SRX706003 0.0 Metatranscriptome 3300049696 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MT_210818 (Metagenome Metatranscriptome) (Annotation) DOE Joint Genome Institute (JGI) 3300049696 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 82624747 174838 17 14 203 38 Unrestricted 69.36 Metatranscriptome 3300036512 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp02_R35 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036512 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 212058884 443506 901 107 1759 1946 SRX8836596 Unrestricted 19.55 Metatranscriptome 3300008013 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Puerto Morelos, Mexico - Orbicella T R C metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300008013 Metatranscriptome Analysis megahit v. 0.2.0 No Yes momedinamunoz@gmail.com Monica _ Medina, Medina Medina No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral host 20.9047 -86.8367 507932807 942552 491 925 1649 2430 SRX3362333 Unrestricted 0.0 Metatranscriptome 3300050702 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae axenic culture microbial communities from LLNL, Livermore, California, USA - f27_d5_W_S42 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050702 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 20029319 23948 2 0 1 3 Restricted 152.76 Metatranscriptome 3300049123 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 86 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049123 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.5186 -82.6406 4811550 9784 4 8 30 33 Restricted 114.82 Metatranscriptome 3300049081 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_4 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300049081 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 80911799 181172 145 26 371 176 Unrestricted 21.54 Metatranscriptome 3300021967 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Metatranscriptome of freshwater microbial communities from post-fracked creek in Pennsylvania, United States - AB:C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021967 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Unclassified freshwater 41.1752 -78.4168 129304411 288029 489 3079 6420 19794 SRX4009984 Unrestricted 0.0 Metatranscriptome 3300037028 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Omics_25_031718 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037028 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 291497456 609025 949 83 1914 1742 SRX8834805 Unrestricted 17.03 Metatranscriptome 3300010415 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS4_55_TP2_13H Marine Biological Laboratory 3300010415 Metatranscriptome Analysis CLC genomics wb7 released per JGI data release policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 639031 1377 204 3 125 5 0.0 Metatranscriptome 3300039271 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Metatranscriptome of coal bed microbial communities from the Powder River Basin, Montana, United States - T6FG11RNAB (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300039271 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Aquatic Groundwater Deep subsurface Coalbed methane well water coal bed water 45.4351 -106.3918 40463975 84931 66 37 691 97 SRX9603762 Unrestricted 113.19 Metatranscriptome 3300030931 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Litter TCEFB (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030931 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr; dcullen@wisc.edu Francis M. Martin; Daniel Cullen No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 46.9233 -110.871944 559550708 1376429 3141 493 5589 774 SRX3343402 Unrestricted 0.0 Metatranscriptome 3300030764 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLI1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030764 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 59.9979 10.7895 61850100 160714 105 208 439 1045 SRX5351257 Unrestricted 0.0 Metatranscriptome 3300037798 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - F18NovB (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037798 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4211 16.6688 120066969 242186 78 631 1102 2159 SRX9165161 Unrestricted 43.79 Metatranscriptome 3300016782 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in K medium, 20 C, 35 psu salinity and 430 ?mol photons light - unclassified eukaryote RCC 998 (MMETSP1309) National Center for Genome Resources 3300016782 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -9.06666667 -136.9833333 13984299 16964 167 54 296 162 0.0 Metatranscriptome 3300032408 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day14_8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032408 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 32522224 52449 11 0 43 5 SRX7582835 Unrestricted 294.65 Metatranscriptome 3300056953 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Vasterbotten County, Sweden - Sphagnum lindbergii 11C_LI_DE (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056953 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.183 19.5578 199829542 422603 291 145 671 586 Unrestricted 61.52 Metatranscriptome 3300017056 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Sargasso Sea in L1 medium with seawater, 20 C, 33 psu salinity and 544 ?mol photons light - unclassified eukaryote CCMP 2135 (MMETSP1467) National Center for Genome Resources 3300017056 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 20.7722 -63.0368 22579673 30036 31 2 31 4 0.0 Metatranscriptome 3300009344 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from the North Atlantic ocean - ACM58 University of Georgia 3300009344 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 45141334 140761 54 73 196 220 0.0 Metatranscriptome 3300034183 *Microbiome Permanent Draft FORHOT Natural soil warming experiment in Iceland Soil microbial communities from grassland in Hveragerdi, Iceland - GO3-A University of Vienna 3300034183 Metatranscriptome Analysis rnaSPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes craig.herbold@microbial-ecology.net Craig Herbold No Environmental Terrestrial Unclassified Soil Grasslands Soil 64.025 -21.205 1974475234 8045715 244312 24088 955231 53233 0.0 Metatranscriptome 3300002860 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - Graham LP Incubations RNA 1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002860 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.2999 -156.61 743121 2184 1 4 132 15 SRX2554383 Unrestricted 0.0 Metatranscriptome 3300017285 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Baffin Bay in ProV 50 medium with seawater and antibiotics, 6 C, 32 psu salinity and 144 ?mol photons light - unclassified eukaryote CCMP 2436 (MMETSP0982) National Center for Genome Resources 3300017285 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 76.3208 -75.8172 40622582 49390 14 15 30 23 0.0 Metatranscriptome 3300008823 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of annulated tree boas from Steinhart Aquarium in San Francisco, USA - CAS03_GI University of California, San Francisco 3300008823 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Unclassified Digestive system Unclassified GI 508422 1675 0 0 1 0 SRX170637 0.0 Metatranscriptome 3300028528 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.376 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028528 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.302 -123.036 96167125 252481 273 843 1403 2313 SRX4821913 Unrestricted 0.0 Metatranscriptome 3300016767 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in artificial seawater, at 22 C, 32 psu salinity and 496 ?mol photons light - Percolomonas cosmopolitus AE-1 (MMETSP0758) National Center for Genome Resources 3300016767 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 16757660 14142 13 1 27 0 0.0 Metatranscriptome 3300037737 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_OW2_C1_D3_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037737 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 65388336 123011 645 2256 5212 5162 SRX8889778 Unrestricted 193.67 Metatranscriptome 3300006356 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006356 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 201084655 570681 4939 14547 13192 38589 SRX2522720 Unrestricted 0.0 Metatranscriptome 3300047432 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 8195820c-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047432 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 414015286 1044416 308 271 1816 1522 Unrestricted 22.28 Metatranscriptome 3300043301 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Metatranscriptome of freshwater picocyanobacteria communities from Lake Michigan, Michigan, United States - MI_BH16_T03 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043301 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.6 -86.9166 147438418 313670 17 3 71 80 Unrestricted 18.75 Metatranscriptome 3300020101 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate b, metaT Georgia Genomics Facility 3300020101 Metatranscriptome Analysis Trinity 2.06 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 21767485 71008 7669 696 18463 1835 0.0 Metatranscriptome 3300031156 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_L6_4mM_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031156 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 8773554 15093 2 0 2 3 SRX6408410 Unrestricted 49.95 Metatranscriptome 3300030863 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030863 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 59.9982 10.7894 50446465 116400 65 126 311 718 SRX5351815 Unrestricted 0.0 Metatranscriptome 3300037850 *Microbiome Permanent Draft Marine planktonic microbial communities from Bay of Bengal, Indian Ocean Metatranscriptome of marine planktonic microbial communities from Bay of Bengal, Indian Ocean - 3A (SRX5580367-SRR8790608) Nanyang Technological University 3300037850 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. released by JGI data releasing policy Yes Yes flauro@ntu.edu.sg Federico Lauro No Environmental Aquatic Unclassified Marine Unclassified Marine planktonic 2.9 78.25 121077981 553512 1053 164 2894 2324 0.0 Metatranscriptome 3300044479 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_22 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300044479 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 148238610 337901 151 398 5287 1981 Unrestricted 72.84 Metatranscriptome 3300032827 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_05JUN2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032827 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3941 -85.3741 54843670 94867 38 27 107 184 SRX7519569 Unrestricted 58.55 Metatranscriptome 3300004784 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004784 Metatranscriptome Analysis megahit v. 0.2.0 No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 110226530 338590 1349 1685 3502 6969 SRX2518208 Unrestricted 0.0 Metatranscriptome 3300006716 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0441B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006716 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -22.5716 -36.5529 127700093 341949 2320 259 6651 772 SRX3324206 Unrestricted 0.0 Metatranscriptome 3300030889 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030889 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 59.9982 10.7894 22706191 49040 172 135 764 1032 SRX5351812 Unrestricted 0.0 Metatranscriptome 3300017049 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in K medium w/o silicate, at 23 C, 0 psu salinity and 277 ?mol photons light - Hemiselmis andersenii CCMP 439 (MMETSP1041) National Center for Genome Resources 3300017049 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 26150127 39215 2 11 4 8 0.0 Metatranscriptome 3300037696 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Metatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_08 (Metagenome Metatranscriptome) - NovaSeq (version 2) DOE Joint Genome Institute (JGI) 3300037696 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen 49.6935 -112.8418 273441510 505728 2 23 44 136 SRX7706008, SRX7706007 Unrestricted 0.0 Metatranscriptome 3300032209 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant-associated microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col_370_1 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300032209 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9573 -83.9276 39925105 56417 0 3 2 3 SRX8128135, SRX8128134 Unrestricted 0.0 Metatranscriptome 3300055153 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP13.2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055153 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 178284104 374886 15 16 82 107 Unrestricted 55.79 Metatranscriptome 3300021878 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-14 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021878 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine -13.1054 -0.32 45205293 96754 100 93 280 300 SRX6381277 Unrestricted 0.0 Metatranscriptome 3300049798 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Metatranscriptome of woodchip biofilm microbial communities from lab scale WBRs in New York, USA - hf_cs_p2_t0_h0_prok (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049798 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 130099190 308936 134 101 1456 571 Unrestricted 91.11 Metatranscriptome 3300016854 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 18 C, 32 psu salinity and 533 ?mol photons light - Chaetoceros affinis CCMP 159 (MMETSP0091) National Center for Genome Resources 3300016854 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 18166172 25922 23 1 37 3 0.0 Metatranscriptome 3300006423 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_056 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006423 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Permafrost soil 68.6135 -149.3144 200529553 578554 9492 6225 42915 13497 SRX2522114 Unrestricted 0.0 Metatranscriptome 3300037081 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - WOF_Exp2_150M_TF_031818 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037081 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 286474385 564240 265 82 702 795 SRX8842015 Unrestricted 40.11 Metatranscriptome 3300035598 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R1103U02 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035598 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0387 34576573 69639 618 1416 3196 5027 SRX9139980, SRX9139981 Unrestricted 0.0 Metatranscriptome 3300030904 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_202 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030904 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92044255 -106.94881797 170768537 395145 494 444 2747 1878 SRX8134565 Unrestricted 14.99 Metatranscriptome 3300009247 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from Amazon river, Brazil - RCM14 University of Georgia 3300009247 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic River Freshwater Unclassified River water 342114155 1067259 82 192 3213 2189 SRX861637 0.0 Metatranscriptome 3300046042 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-69 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046042 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4205 -64.1498 53099073 121532 304 41 536 844 Unrestricted 24.97 Metatranscriptome 3300028182 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0941-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028182 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 245798300 420965 16 11 17 50 SRX5244907 Unrestricted 65.65 Metatranscriptome 3300019108 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_085 - TARA_N000001017 (ERX1809742-ERR1740135) Canada's Michael Smith Genome Sciences Centre 3300019108 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -62.14 -49.3273 156416877 336341 14 11 28 88 0.0 Metatranscriptome 3300010177 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0830 MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010177 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 44785070 94122 1642 72 17405 583 SRX2521856, SRX2521857 Unrestricted 0.0 Metatranscriptome 3300013070 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched backyard soil microbial communities from Emeryville, California, USA - RNA 3rd pass 37_C Kraft BY (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013070 Metatranscriptome Analysis megahit v. 1.0.6 No Yes jmgladden@lbl.gov John Gladden No Environmental Terrestrial Unclassified Soil Unclassified soil 37.83 -122.29 61672761 131230 12 3 327 199 SRX3901974 Unrestricted 0.0 Metatranscriptome 3300037611 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_M1_C1_D1_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037611 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 42776820 79911 437 2068 5367 6307 SRX9382710 Unrestricted 117.02 Metatranscriptome 3300019036 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_082 - TARA_N000001382 (ERX1782404-ERR1712086) Canada's Michael Smith Genome Sciences Centre 3300019036 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -47.1863 -58.2902 562360342 1338444 181 22 341 410 0.0 Metatranscriptome 3300018928 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_093 - TARA_N000001111 (ERX1789573-ERR1719386) Canada's Michael Smith Genome Sciences Centre 3300018928 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com Benjamin Tully No Environmental Aquatic Unclassified Marine Unclassified Marine -33.9116 -73.0537 315033925 809694 16 38 74 389 0.0 Metatranscriptome 3300008845 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_3003 Massachusetts Institute of Technology 3300008845 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 4148578 13984 6 5 311 605 0.0 Metatranscriptome 3300012504 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012504 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 37.1849 -76.1104 168078057 369087 234 933 1483 11336 SRX3007438 Unrestricted 0.0 Metatranscriptome 3300032748 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Amb12_24May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032748 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 695226670 1221856 13 3 20 161 SRX6411421 Unrestricted 0.0 Metatranscriptome 3300052363 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_104 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052363 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 39719812 102891 114 145 937 750 Unrestricted 262.38 Metatranscriptome 3300004623 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor, Time I- 292min-Aaerobic_ RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004623 Metatranscriptome Analysis megahit v. 0.2.0 No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 314376074 646488 197 1228 517 3653 SRX2518189 Unrestricted 0.0 Metatranscriptome 3300026420 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 40R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026420 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 120384517 243913 248 32 295 524 SRX4795891 Unrestricted 29.7 Metatranscriptome 3300052389 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_18 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052389 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 143090796 380818 225 193 1412 1057 Unrestricted 60.15 Metatranscriptome 3300036111 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of sediment eukaryotic communities from Prado wetlands, California, USA - CSM_Prado_Oct18_AM_0.5z2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036111 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 151455546 243863 11 20 75 49 SRX8741376 Unrestricted 95.25 Metatranscriptome 3300009543 *Microbiome Permanent Draft Marine eukaryotic communities from various locations to study complex ecological interactions Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_20Mar14_M2_3um Metatranscriptome (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009543 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes azworden@mbari.org; twoyke@lbl.gov Alexandra Worden; Tanja Woyke No Environmental Aquatic Oceanic Marine Unclassified Marine 36.6882 -122.386 659617444 1231257 373 69 2812 1068 SRX7203898 Unrestricted 0.0 Metatranscriptome 3300031070 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T17 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031070 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 29145564 53890 32 23 127 157 SRX5794432 Unrestricted 15.11 Metatranscriptome 3300005248 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1900_T MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005248 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 61768759 150000 50 5 289 14 SRX2521302, SRX2521301 Unrestricted 0.0 Metatranscriptome 3300055422 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P35SSC1_190914_f (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300055422 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 53210330 98540 23 22 271 114 Unrestricted 0.0 Metatranscriptome 3300020209 *Microbiome Permanent Draft Metatranscriptome of freshwater microbial communities within cyanobacterial aggregates from lake Taihu, China Freshwater microbial communities within cyanobacterial aggregates from lake Taihu, China - 10_5_0:00 total sequence Beijing Novogene Bioinformatics Technology Co., Ltd 3300020209 Metatranscriptome Analysis Trinity v2.4 released by JGI data releasing policy No Yes hycai@niglas.ac.cn haiyuan cai No Environmental Aquatic Lake Freshwater Unclassified freshwater 31.3 120.11 31575835 69375 43 14 33 171 0.0 Metatranscriptome 3300034184 *Microbiome Permanent Draft FORHOT Natural soil warming experiment in Iceland Soil microbial communities from grassland in Hveragerdi, Iceland - GO1-E University of Vienna 3300034184 Metatranscriptome Analysis rnaSPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes craig.herbold@microbial-ecology.net Craig Herbold No Environmental Terrestrial Unclassified Soil Grasslands Soil 64.025 -21.205 1590618677 6515258 327511 36528 1082389 49175 0.0 Metatranscriptome 3300023692 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 36R_r (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023692 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 51208614 99430 36 21 355 448 SRX4479787 Unrestricted 54.98 Metatranscriptome 3300058688 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP13.3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300058688 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 488786206 1017055 39 43 216 216 Unrestricted 52.9 Metatranscriptome 3300018588 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_022 - TARA_A100000538 (ERX1782191-ERR1712140) Canada's Michael Smith Genome Sciences Centre 3300018588 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.814 17.4138 43785170 95165 4 5 17 114 0.0 Metatranscriptome 3300008824 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of annulated tree boas from Steinhart Aquarium in San Francisco, USA - CAS04_GI University of California, San Francisco 3300008824 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Unclassified Digestive system Unclassified GI 493063 1699 0 0 0 0 SRX170638 0.0 Metatranscriptome 3300026935 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0919-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026935 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 96799297 189652 14 32 9 92 SRX5244837 Unrestricted 127.83 Metatranscriptome 3300007240 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 8/11/14 B green RNA (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007240 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ebyoung@uwm.edu Erica Young, Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 431051219 1041147 1511 1854 4103 7390 SRX5628654 Unrestricted 0.0 Metatranscriptome 3300003728 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CSWold_Dec13 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003728 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 14634949 25683 196 43 445 105 SRX3339503 Unrestricted 0.0 Metatranscriptome 3300016882 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with 33 psu seawater, 19 C, 33 psu salinity and 331 ?mol photons light - Strombidium rassoulzadegani ras09 (MMETSP0449_2) National Center for Genome Resources 3300016882 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 41.0 -72.0 13529730 28277 1 11 2 13 0.0 Metatranscriptome 3300030975 *Microbiome Permanent Draft Forest soil eukaryotic communities from Alaska, USA, for a soil warming experiment in a boreal forest Forest soil eukaryotic communities from Alaska, USA, for a soil warming experiment in a boreal forest - Alaskan Soil AK pilot (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030975 Metatranscriptome Analysis megahit v. 0.2.0 No Yes treseder@uci.edu Kathleen Treseder No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Alaskan boreal forest 63.883 -145.733 167567712 599016 5908 3471 22075 7611 SRX2753459, SRX2753458 Unrestricted 0.0 Metatranscriptome 3300009281 *Microbiome Permanent Draft Microbial communities of wastewater sludge from Singapore Microbial communities of wastewater sludge from Singapore - Sludge_b1_October Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300009281 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified Wastewater sludge 1.2 103.45 574662761 2020767 8576 1682 57758 6133 SRX373536 0.0 Metatranscriptome 3300004769 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004769 Metatranscriptome Analysis megahit v. 0.2.0 No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 628126279 1776843 2576 1923 6989 12230 SRX2518248 Unrestricted 0.0 Metatranscriptome 3300030864 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T22 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030864 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 50611157 100108 81 85 142 414 SRX5794467 Unrestricted 23.78 Metatranscriptome 3300016978 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in f/2 medium, 20 C, 36 psu salinity and 297 ?mol photons light - Pseudo-nitzschia arenysensis B593 (MMETSP0329) National Center for Genome Resources 3300016978 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 40.8083 14.25 26199916 24562 22 2 41 3 0.0 Metatranscriptome 3300004783 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004783 Metatranscriptome Analysis megahit v. 0.2.0 No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 69554210 239437 1823 3001 5713 9930 SRX5329104 Unrestricted 0.0 Metatranscriptome 3300019031 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_142 - TARA_N000003104 (ERX1782386-ERR1711939) Canada's Michael Smith Genome Sciences Centre 3300019031 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 25.6168 -88.4532 700751680 1701383 275 40 1047 843 0.0 Metatranscriptome 3300037616 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_M1_C1_D3_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037616 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 33856556 61195 459 1578 5540 4036 SRX9382711 Unrestricted 149.78 Metatranscriptome 3300030757 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PO 4A (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030757 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 171053313 537218 3278 1148 7897 2877 SRX2753452 Unrestricted 0.0 Metatranscriptome 3300049837 *Microbiome Permanent Draft Biofilm microbial communities of laboratory-scale, methanol-fed denitrifying cultures Lab-enriched, denitrifying biofilm microbial communities from a recirculating reactor in Laval, Quebec, Canada - Condition 6 Genome Quebec 3300049837 Metatranscriptome Analysis Trinity v. 2.9.1 No Yes richard.villemur@iaf.inrs.ca Richard Villemur No Engineered Bioreactor Unclassified Denitrification Unclassified Biofilm 45.54491579 -73.71990935 40458563 100639 120 6 371 19 0.0 Metatranscriptome 3300048517 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_6_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048517 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 20270554 38837 2 0 18 0 Restricted 215.2 Metatranscriptome 3300008912 *Microbiome Permanent Draft Eukaryotic communities of quiescent and activated human skeletal muscle stem cells from California, USA Eukaryotic communities of quiescent and activated human skeletal muscle stem cells from California, USA - Activated 2 Stanford University 3300008912 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human HuSC Cell culture Unclassified Human skeletal muscle 37.43 -122.17 35292971 73695 0 1 5 10 ERX1052324 0.0 Metatranscriptome 3300021954 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Marine eukaryotic phytoplankton communities from the Norwegian Sea - 10m ARK-5M Euk ARK-5-1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021954 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 71.2008 8.8666 156608362 343426 62 66 132 277 SRX3317826 Unrestricted 0.0 Metatranscriptome 3300023709 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501CT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023709 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 245588191 471680 306 463 2840 3463 SRX4498683 Unrestricted 27.4 Metatranscriptome 3300042581 *Microbiome Permanent Draft Biological soil crust microbial communities from Mojave Desert, California, United States Metatranscriptome of biological soil crust microbial communities from Mojave Desert, CA, USA - CLC_S1_18hours_MT_FICUS_504271 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042581 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes erik@olemiss.edu Erik Hom No Environmental Terrestrial Soil crust Soil Unclassified biological soil crusts 34.1736 -115.3888 35379485 68393 239 209 2503 992 Unrestricted 90.16 Metatranscriptome 3300026913 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0436-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026913 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 118764817 196952 116 68 18 94 SRX5251947 Unrestricted 124.94 Metatranscriptome 3300036437 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp02_R34 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036437 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 156510749 345936 742 102 1474 1643 SRX8836598 Unrestricted 27.35 Metatranscriptome 3300030830 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_368 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030830 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040645 -106.94847615 107225546 250784 374 519 3758 2786 SRX8134998 Unrestricted 26.46 Metatranscriptome 3300016853 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Saldanha Bay in L1 medium with natural Eastern Pacific seawater, no silica (Eastern Pacific), 21 C, 35 psu salinity and 627 ?mol photons light - Micromonas pusilla CCAC 1681 (MMETSP1401) National Center for Genome Resources 3300016853 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 16858591 14457 1 5 1 9 0.0 Metatranscriptome 3300006424 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006424 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 220670927 590937 2092 12225 4861 30927 SRX3196359 Unrestricted 0.0 Metatranscriptome 3300030903 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030903 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040645 -106.94847615 310628289 727095 434 590 3151 2917 SRX8134997 Unrestricted 23.74 Metatranscriptome 3300037691 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Metatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_06 (Metagenome Metatranscriptome) - NovaSeq (version 2) DOE Joint Genome Institute (JGI) 3300037691 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen 49.6935 -112.8418 241824631 429504 3 20 34 74 SRX4804159, SRX7705824 Unrestricted 0.0 Metatranscriptome 3300031022 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300031022 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate/submediterranean forest 42.0 1.0 410153837 996021 275 108 10166 1306 SRX2999390 Unrestricted 0.0 Metatranscriptome 3300042058 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Metatranscriptome of estuary water microbial communities from Narragansett Bay, Rhode Island, USA - E3_AmbB (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042058 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.9078 -71.5683 273163806 521723 412 178 763 1204 SRX14875701 Unrestricted 14.65 Metatranscriptome 3300006711 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP2255 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006711 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 10.09 -99.25 87314603 284808 3969 4576 11229 12828 SRX3299175 Unrestricted 0.0 Metatranscriptome 3300018880 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_110 - TARA_N000001752 (ERX1782455-ERR1712124) Canada's Michael Smith Genome Sciences Centre 3300018880 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -1.9002 -84.6265 203772703 583737 178 47 816 788 0.0 Metatranscriptome 3300010075 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_2_24_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010075 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 31042189 70251 140 504 19305 4618 Unrestricted 0.0 Metatranscriptome 3300052738 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Weichs, Bavaria, Germany - PB8_MT_210318 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052738 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 48.39537892 11.44760761 32210088 68308 10 13 319 11 Unrestricted 0.0 Metatranscriptome 3300002677 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF124 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002677 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 14091594 38954 118 519 1538 2551 SRX2014411 Unrestricted 0.0 Metatranscriptome 3300004116 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF206 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004116 Metatranscriptome Analysis megahit v. 0.2.0 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.531427 -72.189946 68401620 255147 1134 558 4745 2209 SRX2013849 Unrestricted 0.0 Metatranscriptome 3300052364 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_104B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052364 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Bulk soil Soil 38.992973 -123.067448 18703748 50631 64 97 599 578 Unrestricted 688.72 Metatranscriptome 3300004624 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor, Time B -10min-Anaerobic_ RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004624 Metatranscriptome Analysis megahit v. 0.2.0 No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 326448783 678837 349 1378 780 3794 SRX2518139 Unrestricted 0.0 Metatranscriptome 3300029646 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_10-13C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029646 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.3049 -116.2547 25817522 55483 109 123 365 634 SRX5336034 Unrestricted 34.53 Metatranscriptome 3300041497 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaT AgResearch, New Zealand, Mosgeil 3300041497 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Unclassified Roots Unclassified White clover root -43.648506 172.343549 20074576 34938 153 120 630 254 0.0 Metatranscriptome 3300039338 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050630_1800_MSt1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300039338 Metatranscriptome Analysis MEGAHIT v. 1.2.9 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 142486975 298294 0 1 54 5 SRX8240880, SRX8240881 Unrestricted 0.0 Metatranscriptome 3300030538 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen0, Rep 1, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030538 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 39758050 40135 1 0 12 6 SRX5087084, SRX5087085 Unrestricted 0.0 Metatranscriptome 3300046288 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_5_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046288 Metatranscriptome Analysis megahit v. 2021-06-25 00:22:18 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated, Environmental Arthropoda, Terrestrial Insects nest Ant dump, Nest Nest dump ant dump 43.0765 -89.412 181240123 242610 5 0 35 2 Restricted 113.95 Metatranscriptome 3300006266 *Microbiome Permanent Draft Prairie soil microbial communities from Kansas, USA, after rainfall Prairie soil microbial communities from Kansas, USA, after rainfall - K24 Oregon State University 3300006266 Metatranscriptome Analysis VELVET 1.2.10, combine 23, 27, 31 released per JGI data release policy No Yes lzeglin@ksu.edu Lydia Zeglin No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.1038 -96.6133 70568 417 3 0 2 0 0.0 Metatranscriptome 3300010887 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS6_55_TP2_13H Marine Biological Laboratory 3300010887 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 69296 176 17 0 38 0 0.0 Metatranscriptome 3300029687 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_6_6_36m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029687 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 92164520 188870 111 31 1177 342 SRX5337984 Unrestricted 27.11 Metatranscriptome 3300031609 *Microbiome Permanent Draft Freshwater RNA viral communities from high-CO2 subsurface aquifer at Crystal Geyser, Utah, USA Metatranscriptome of freshwater viral communities from high-CO2 subsurface aquifer at Crystal Geyser, Utah, USA - CG16 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031609 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes nckyrpides@lbl.gov Nikos Kyrpides No Environmental Aquatic Groundwater Deep subsurface Unclassified subsurface water 38.9383 -110.1342 81016980 147429 21 64 150 227 SRX8128136 Unrestricted 0.0 Metatranscriptome 3300020106 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 900m, 250-2.7um, replicate a, metaT Georgia Genomics Facility 3300020106 Metatranscriptome Analysis Trinity 2.06 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 32857171 104660 10302 5483 23616 18279 0.0 Metatranscriptome 3300057135 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Western Region, Iceland - Sphagnum magellanicum H2_MAG_ICE (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300057135 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 226768414 474431 123 68 406 284 Unrestricted 37.12 Metatranscriptome 3300052330 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_3B2_100218_0210 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052330 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@dbi.udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 64471793 157933 376 99 856 532 Unrestricted 236.68 Metatranscriptome 3300001208 *Microbiome Permanent Draft Contaminated soil microbial communities from Tipperary, Ireland, in a timber treatment facility Contaminated soil microbial communities from Tipperary, Ireland - cDNA isolated at day 18 University of Liverpool 3300001208 Metatranscriptome Analysis released per JGI data release policy No Yes mardiana.mohd-ashaari@ucdconnect.ie Mardiana Mohd Ashaari No Environmental Terrestrial Unclassified Soil Contaminated Contaminated soil 52.512199 -8.226278 0 0 0 0 0 0 0.0 Metatranscriptome 3300029659 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_5-13C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029659 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.305 -116.2547 44030953 90738 85 191 566 830 SRX5336456 Unrestricted 32.77 Metatranscriptome 3300049691 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MT_200917 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049691 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 140464207 284845 12 9 180 20 Unrestricted 52.77 Metatranscriptome 3300010859 *Microbiome Permanent Draft Forest soil eukaryotic communities from Alaska, USA, for a soil warming experiment in a boreal forest Boreal forest soil eukaryotic communities from Alaska, USA - C5-5 Metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010859 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes treseder@uci.edu Kathleen Treseder No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Boreal forest soil 63.883 -145.733 148694516 339801 152 319 12144 4023 SRX3007279 Unrestricted 0.0 Metatranscriptome 3300003572 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA Grassland soil microbial communities from Hopland, California, USA - Sample H3_Bulk_40 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003572 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes pettridge2@llnl.gov, nuccio1@llnl.gov; pettridge2@llnl.gov Jennifer Pett-Ridge, Erin Nuccio; Jennifer Pett-Ridge No Environmental Terrestrial Grasslands Soil Bulk soil Avena fatua rhizosphere 38.972988 -123.116539 91098843 279721 377 343 2183 2321 SRX2564898 Unrestricted 0.0 Metatranscriptome 3300041532 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_16 MetaT AgResearch, New Zealand, Mosgeil 3300041532 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 131718619 288813 275 102 2386 198 0.0 Metatranscriptome 3300017051 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with Sargasso seawater, 14 C, 36 psu salinity and 382 ?mol photons light - Ditylum brightwellii GSO105 (MMETSP0998) National Center for Genome Resources 3300017051 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 47.74 -122.417 33558215 39301 15 10 22 12 0.0 Metatranscriptome 3300004498 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 127_HOW14 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004498 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 29827352 68417 203 6 1093 15 SRX2780256 Unrestricted 0.0 Metatranscriptome 3300020115 *Microbiome Permanent Draft Metatranscriptome of freshwater microbial communities within cyanobacterial aggregates from lake Taihu, China Freshwater microbial communities within cyanobacterial aggregates from lake Taihu, China - 10_5_12:00 Beijing Novogene Bioinformatics Technology Co., Ltd 3300020115 Metatranscriptome Analysis Trinity v2.4 released by JGI data releasing policy No Yes hycai@niglas.ac.cn haiyuan cai No Environmental Aquatic Lake Freshwater Unclassified freshwater 31.3 120.11 12448568 33680 86 29 56 300 0.0 Metatranscriptome 3300019004 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_051 - TARA_N000000225 (ERX1782445-ERR1712173) Canada's Michael Smith Genome Sciences Centre 3300019004 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -21.4689 54.3066 569199021 1429980 95 102 481 1018 0.0 Metatranscriptome 3300028547 *Microbiome Permanent Draft Lab enriched biofilm microbial communities from the Montreal Biodome aquarium denitrification system, Montreal, Canada Lab enriched biofilm microbial communities from the Montreal Biodome aquarium denitrification system, Montreal, Canada - Reference Genome Quebec 3300028547 Metatranscriptome Analysis Trinity Denovo v. 2.4.0. released by Villemur Richard No Yes richard.villemur@iaf.inrs.ca Richard Villemur No Engineered Lab enrichment Anaerobic media Defined media Unclassified Biofilm 45.5596 -73.5497 8 24115252 61481 22 3 78 5 0.0 Metatranscriptome 3300030597 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO747-VDE046SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030597 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.296 -71.1763 446501277 946003 52 80 1744 430 SRX4391416 Unrestricted 0.0 Metatranscriptome 3300042153 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Metatranscriptome of seawater microbial communities from Western North Atlantic Ocean - Oce4_MesoR (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042153 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Unclassified Marine Unclassified seawater 30.3225 -76.7039 178675455 387593 117 56 523 991 Unrestricted 28.47 Metatranscriptome 3300039276 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Ab8 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300039276 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 451556849 902379 385 256 1740 1105 SRX9404277 Unrestricted 20.45 Metatranscriptome 3300010862 *Microbiome Permanent Draft Forest soil eukaryotic communities from Alaska, USA, for a soil warming experiment in a boreal forest Boreal forest soil eukaryotic communities from Alaska, USA - C4-4 Metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010862 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes treseder@uci.edu Kathleen Treseder No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Boreal forest soil 63.883 -145.733 165561784 377417 148 464 15900 4618 SRX3007281 Unrestricted 0.0 Metatranscriptome 3300030936 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A9_OS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300030936 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate/submediterranean forest 42.0 1.0 320443988 725598 431 332 7165 4850 SRX2999533 Unrestricted 0.0 Metatranscriptome 3300029662 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant-associated microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col_370_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029662 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9573 -83.9276 56691955 101119 0 0 1 0 SRX8128135, SRX8128134 Unrestricted 0.0 Metatranscriptome 3300008684 *Microbiome Permanent Draft Food microbial communities from the fermentation process of Kimchi from South Korea Food microbial communities from the fermentation process of Kimchi from South Korea - J29 Chung-Ang Univiersity 3300008684 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Fermented vegetables Unclassified Fermented vegetables 10554759 23007 15 2 225 55 0.0 Metatranscriptome 3300049086 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_13 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300049086 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 191318027 431072 238 64 679 288 Unrestricted 23.08 Metatranscriptome 3300008309 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.11.3OB.15dpc CCME-COLORADO 3300008309 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 6480974 24502 51 3 559 11 0.0 Metatranscriptome 3300017122 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L/25 medium, at 18 C, 32 psu salinity and 464 ?mol photons light - Gephyrocapsa oceanica RCC 1303 (MMETSP1363) National Center for Genome Resources 3300017122 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 33217589 44539 5 4 11 4 0.0 Metatranscriptome 3300041438 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass leaf microbial community from Lincoln, Canterbury, New Zealand - RGL18_8 MetaT AgResearch, New Zealand, Mosgeil 3300041438 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 4391081 7567 105 113 362 325 0.0 Metatranscriptome 3300018739 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_085 - TARA_N000001019 (ERX1789514-ERR1719246) Canada's Michael Smith Genome Sciences Centre 3300018739 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -62.2024 -49.2382 144861808 343245 28 18 45 193 0.0 Metatranscriptome 3300046221 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_5_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046221 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 39294135 77422 1 0 24 1 Restricted 221.35 Metatranscriptome 3300047338 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_3_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047338 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 87658043 131981 2 0 23 0 Restricted 148.72 Metatranscriptome 3300025747 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepB_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300025747 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 77456075 162526 34 40 193 335 SRX4547625 Unrestricted 21.17 Metatranscriptome 3300036173 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of phycosphere-associated microbial communities from LLNL, Livermore, CA, United States - Pt_6CLA_filter_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036173 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Phycosphere Diatoms Unclassified defined media 37.6818 -121.768 25155807 30813 1 1 4 39 SRX8240541 Unrestricted 81.02 Metatranscriptome 3300028243 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - MB_1025D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028243 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 16524300 35764 50 5 67 153 SRX5172118 Unrestricted 13.33 Metatranscriptome 3300004592 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 26 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004592 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 68414358 230202 5823 2190 19771 4645 Unrestricted 0.0 Metatranscriptome 3300021229 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from nest from French Guiana - 12-5 mRNA SA University of Luxembourg 3300021229 Metatranscriptome Analysis CLC Genomics Workbench Version 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 5.06224 -53.047407 37128730 133066 1 4 4 23 0.0 Metatranscriptome 3300018947 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_142 - TARA_N000003102 (ERX1782406-ERR1712029) Canada's Michael Smith Genome Sciences Centre 3300018947 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 25.6168 -88.4532 436225060 936322 76 36 361 480 0.0 Metatranscriptome 3300011024 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 8 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011024 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 14291341 34503 64 101 5540 687 Unrestricted 0.0 Metatranscriptome 3300018521 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_036 - TARA_N000000311 (ERX1782300-ERR1712011) Canada's Michael Smith Genome Sciences Centre 3300018521 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 20.8183 63.5047 16787735 42908 4 15 47 190 0.0 Metatranscriptome 3300053652 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T4_4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053652 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 131428190 271648 72 36 292 140 Unrestricted 0.0 Metatranscriptome 3300018620 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from deep sea water colum in Eastern Mediterranean Sea Metatranscriptome of marine microbial communities from deep sea water colum in Eastern Mediterranean Sea - KM3-2 Woods Hole Oceanographic Institution 3300018620 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 36.29 15.39 20877817 42494 599 128 1399 235 0.0 Metatranscriptome 3300041885 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_489 MetaT AgResearch, New Zealand, Mosgeil 3300041885 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 38262800 82900 242 74 1669 152 0.0 Metatranscriptome 3300032727 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Plim5_22May_deep (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032727 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 1039277532 1821491 20 8 27 153 SRX5801944 Unrestricted 0.0 Metatranscriptome 3300010434 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS5_55_TP1_13L Marine Biological Laboratory 3300010434 Metatranscriptome Analysis CLC genomics wb7 released per JGI data release policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933 -130.014 460782 1289 112 7 294 10 0.0 Metatranscriptome 3300008137 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - PM97.FECAL.14dpc CCME-COLORADO 3300008137 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 7773783 30698 55 2 1117 13 0.0 Metatranscriptome 3300036498 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Omics11_030718 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036498 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 218145461 459726 796 63 1481 1670 SRX8834207 Unrestricted 17.6 Metatranscriptome 3300030789 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PO 3B (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030789 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 292195540 875255 1200 797 3683 2055 SRX2753405 Unrestricted 0.0 Metatranscriptome 3300016754 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071405BT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016754 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 314061785 688597 210 234 3526 4414 SRX3780778 Unrestricted 0.0 Metatranscriptome 3300010108 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_8_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010108 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 65891624 155190 111 673 9458 5562 Unrestricted 0.0 Metatranscriptome 3300022597 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL T3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022597 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes momedinamunoz@gmail.com Medina Medina No Host-associated Invertebrates Coral Cnidaria Unclassified coral 9.1956 -82.1254 144179363 216295 118 285 1820 2263 SRX3998601 Unrestricted 0.0 Metatranscriptome 3300009228 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from Amazon river, Brazil - RCM7 University of Georgia 3300009228 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic River Freshwater Unclassified River water 138623500 424368 27 33 337 230 SRX860856 0.0 Metatranscriptome 3300042422 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_38E_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042422 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 41483522 51421 3 0 14 1 Unrestricted 286.63 Metatranscriptome 3300031410 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_L6_8mM_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031410 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 19729203 31153 0 1 2 2 SRX5783476 Unrestricted 37.3 Metatranscriptome 3300011426 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E36 Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011426 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Fecal 38.04 -122.5 425440977 794901 55 489 940 5410 SRX3007453, SRX2526856 Unrestricted 0.0 Metatranscriptome 3300031583 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_L6_8mM_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031583 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 13426948 21604 0 1 1 3 SRX5783474 Unrestricted 33.37 Metatranscriptome 3300031458 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T16 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031458 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 35317402 66245 44 19 83 141 SRX5794431 Unrestricted 16.41 Metatranscriptome 3300019177 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZI1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019177 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 49.043 13.6183 12143852 25973 8 276 347 1557 SRX3937187 Unrestricted 0.0 Metatranscriptome 3300017326 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Baffin Bay in L1 medium with seawater, 2 C, 33 psu salinity and 547 ?mol photons light - Polarella glacialis CCMP 2088 (MMETSP1440) National Center for Genome Resources 3300017326 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 78.5978 -74.4992 37383577 62750 0 4 0 3 0.0 Metatranscriptome 3300035295 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - REXBLNK (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035295 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0386 1001101 2275 9 0 27 7 SRX8235705 Unrestricted 80.53 Metatranscriptome 3300008723 *Microbiome Permanent Draft Acid mine drainage (AMD) microbial communities from Richmond mine in California, USA Acid mine drainage (AMD) microbial communities of acidophilic biofilm from Richmond mine in California, USA - R1 GS05 University of California, Berkeley 3300008723 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes Yes 25361394 Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 3974441 9855 8 0 43 0 SRX317229 0.0 Metatranscriptome 3300036592 *Microbiome Permanent Draft Rumen fluid microbial communities from dairy cows in UC Davis, California, USA Metatranscriptome of rumen fluid microbial communities from dairy cow in UC Davis, California, USA - UCD_Rumen_Seaweed_2623 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300036592 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bmroque@ucdavis.edu Breanna Roque No Host-associated Mammals Stomach Digestive system Rumen fluid rumen fluid 38.5368 -121.7595 229926958 441068 2 19 112 225 Unrestricted 0.0 Metatranscriptome 3300016867 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in f/2 medium with artificial seawater, no silicate, 21 C, 35 psu salinity and 410 ?mol photons light - micromonas sp. NEPCC29 (MMETSP1082) National Center for Genome Resources 3300016867 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 49.25 -123.1 20643811 16625 9 3 11 3 0.0 Metatranscriptome 3300017588 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 18 C, 32 psu salinity and 532 ?mol photons light - Chaetoceros affinis CCMP 159 (MMETSP0088) (SRX549061-SRR1294447) National Center for Genome Resources 3300017588 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 4259199 8578 3 1 4 1 0.0 Metatranscriptome 3300008014 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Puerto Morelos, Mexico - Diporia T B metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300008014 Metatranscriptome Analysis megahit v. 0.2.0 No Yes momedinamunoz@gmail.com Monica _ Medina, Medina Medina No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral host 20.8778 -86.8431 303077726 453663 54 180 254 627 SRX3362340 Unrestricted 0.0 Metatranscriptome 3300032540 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red3_26May_deep (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032540 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 1076118861 1825956 10 10 30 174 SRX6410051 Unrestricted 19.1 Metatranscriptome 3300049124 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 87 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049124 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.5186 -82.6406 7589983 14523 12 7 47 42 Restricted 84.71 Metatranscriptome 3300053683 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T3_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053683 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 48460147 94594 20 0 135 19 Unrestricted 0.0 Metatranscriptome 3300018986 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000596 Canada's Michael Smith Genome Sciences Centre 3300018986 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 35.7444 14.3083 602703913 1184401 69 61 212 546 0.0 Metatranscriptome 3300037750 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of photosynthetic mat microbial communities from Mushroom Spring, YNP, Wyoming, United States - 20090729 2005 sample R3cd (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037750 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 92147546 192459 2 2 77 6 SRX9378924 Unrestricted 184.12 Metatranscriptome 3300030763 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030763 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 59.9989 10.7903 99896061 249523 38 68 310 330 SRX5351811 Unrestricted 0.0 Metatranscriptome 3300006698 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP2049 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006698 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 15.91 -124.47 67966715 218674 1796 1116 5177 2908 SRX3299149 Unrestricted 0.0 Metatranscriptome 3300037718 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of photosynthetic mat microbial communities from Mushroom Spring, YNP, Wyoming, United States - 20090730 0615 sample R8cd (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037718 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 90792649 209188 1 0 54 0 SRX9378930 Unrestricted 277.53 Metatranscriptome 3300056954 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Vasterbotten County, Sweden - Sphagnum balticum 16OTC_BA_DE (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056954 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.183 19.5578 242030546 511437 295 171 834 761 Unrestricted 60.52 Metatranscriptome 3300012689 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES065 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012689 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.041 -89.686 109709935 185189 19 45 211 1623 SRX3010859 Unrestricted 0.0 Metatranscriptome 3300032150 *Microbiome Permanent Draft Extreme environments viral communities from various locations Metatranscriptome of sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SB 2018 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032150 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Coastal Marine Brine sea-ice brine 71.473 -156.7294 56478586 117282 307 45 230 376 SRX5809211 Unrestricted 42.23 Metatranscriptome 3300010105 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_16_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010105 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 65251329 152311 199 769 16027 6522 Unrestricted 0.0 Metatranscriptome 3300030867 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 2C (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030867 Metatranscriptome Analysis megahit v. 0.2.0 No Yes fmartin1954@me.com Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 135726172 455064 9180 1220 15154 3664 SRX2752787 Unrestricted 0.0 Metatranscriptome 3300056989 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Frasne, France - Sphagnum magellanicum 2OTC_MAG_FR (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056989 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 192619070 412283 257 147 548 691 Unrestricted 56.45 Metatranscriptome 3300007195 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - OCT_B_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007195 Metatranscriptome Analysis megahit v. 0.2.0 No Yes binskeep@montana.edu, binskeep@montana.edu; jim.fredrickson@pnnl.gov William Inskeep, William P. Inskeep; Jim Fredrickson No Environmental Aquatic Unclassified Thermal springs Unclassified Thermal springs 44.534 -110.7978 72296004 225062 1492 51 9440 116 SRX2522145 Unrestricted 0.0 Metatranscriptome 3300052776 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_89B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052776 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Bulk soil Soil 38.992973 -123.067448 24261285 64927 81 125 562 679 Unrestricted 142.81 Metatranscriptome 3300009225 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from Amazon river, Brazil - RCM4 University of Georgia 3300009225 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic River Freshwater Unclassified River water 333485489 1003172 169 75 1248 446 SRX858774 0.0 Metatranscriptome 3300011330 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S17 Surf_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011330 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 150851431 370142 177 61 1836 1756 SRX3787208 Unrestricted 0.0 Metatranscriptome 3300050692 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae axenic culture microbial communities from LLNL, Livermore, California, USA - f18_d2_W_S27 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050692 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 20949722 24538 5 0 0 8 Restricted 204.21 Metatranscriptome 3300047670 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81958b9e-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047670 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 83117156 203682 375 229 1538 1343 Unrestricted 39.29 Metatranscriptome 3300036460 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Metatranscriptome of soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_Dec_plot1_rep2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036460 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6539 -80.6288 113952873 257527 462 414 2635 2474 SRX8186593 Unrestricted 56.33 Metatranscriptome 3300037733 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_OW2_C1_D2_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037733 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 53188863 97225 466 2154 4117 5301 SRX8889693 Unrestricted 120.31 Metatranscriptome 3300016763 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in Yeast-Peptone-Dextrose Broth, at 25 C and 223 ?mol photons light - Debaryomyces hansenii J26 (MMETSP0234) National Center for Genome Resources 3300016763 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 9685201 9668 0 2 0 1 0.0 Metatranscriptome 3300008827 *Microbiome Permanent Draft Microbial communities of mouse gut induced with colitis from Vienna, Austria Microbial communities of mouse gut induced with colitis from Vienna, Austria - CL11_2_BC5 University of Vienna 3300008827 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Stomach Digestive system Forestomach Foregut of mice 1963465 7850 116 2 1625 9 SRX326444 0.0 Metatranscriptome 3300010909 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS5_55_TP1_13H Marine Biological Laboratory 3300010909 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933 -130.014 1447887 3493 128 5 187 6 0.0 Metatranscriptome 3300019111 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_153 - TARA_N000002817 (ERX1782321-ERR1712210) Canada's Michael Smith Genome Sciences Centre 3300019111 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 44.0497 -16.6034 144104563 313000 77 19 295 297 0.0 Metatranscriptome 3300041888 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_491 MetaT AgResearch, New Zealand, Mosgeil 3300041888 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 64571642 136970 286 116 2459 314 0.0 Metatranscriptome 3300021329 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States - S.625 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021329 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.178 -123.853 327529660 799211 187 2067 2707 6631 SRX4663973, SRX4663974 Unrestricted 0.0 Metatranscriptome 3300033603 *Microbiome Permanent Draft Phytoplankton bloom bacterial communities from coast of New Jersey, USA Phytoplankton bloom bacterial communites from coast of New Jersey, USA - 16 meters Michigan State University 3300033603 Metatranscriptome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy No Yes zehnp1jr@cmich.edu Jessica Zehnpfennig No Environmental Aquatic Coastal Marine Unclassified phytoplankton bloom 37.8665611 -70.23155278 144858085 497094 175 11 233 92 0.0 Metatranscriptome 3300024943 *Microbiome Permanent Draft Anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States Metatranscriptome of anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States - LAC_MetaT_11 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024943 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes alvarez@ce.berkeley.edu Lisa Alvarez-Cohen No Engineered Bioreactor Unclassified Anaerobic Unclassified anaerobic bioreactor biomass 37.8719 -122.2585 68192670 123123 17 24 310 114 SRX4391793 Unrestricted 0.0 Metatranscriptome 3300034187 *Microbiome Permanent Draft FORHOT Natural soil warming experiment in Iceland Soil microbial communities from grassland in Hveragerdi, Iceland - GO3-E University of Vienna 3300034187 Metatranscriptome Analysis rnaSPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes craig.herbold@microbial-ecology.net Craig Herbold No Environmental Terrestrial Unclassified Soil Grasslands Soil 64.025 -21.205 1812573527 7406134 244103 21547 1100595 82895 0.0 Metatranscriptome 3300011364 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung Idec1 Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011364 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Fecal 38.04 -122.5 43853289 100756 83 1101 9095 7722 SRX2526864 Unrestricted 0.0 Metatranscriptome 3300020076 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3) (version 3) DOE Joint Genome Institute (JGI) 3300020076 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil corn rhizosphere 42.3948 -85.3738 348471870 816913 437 2627 10551 29558 SRX4365319, SRX4365318 Unrestricted 0.0 Metatranscriptome 3300006695 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP324 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006695 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -9.13 -30.19 72057738 203742 1951 2803 4887 6502 SRX3299395 Unrestricted 0.0 Metatranscriptome 3300018679 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_123 - TARA_N000001998 (ERX1782283-ERR1711917) Canada's Michael Smith Genome Sciences Centre 3300018679 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.8932 -140.2879 151825929 260368 6 17 9 111 0.0 Metatranscriptome 3300036434 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8CT15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036434 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 154637151 305696 424 1634 2476 6173 SRX8379638 Unrestricted 64.84 Metatranscriptome 3300037715 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of photosynthetic mat microbial communities from Mushroom Spring, YNP, Wyoming, United States - 20090729 1925 sample R2cd (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037715 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 113853510 243627 2 0 86 3 SRX9378936 Unrestricted 194.05 Metatranscriptome 3300016789 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 mediium with seawater, at 24 C, 33 psu salinity and 564 ?mol photons light - unclassified eukaryote CCMP 1205 (MMETSP1469) National Center for Genome Resources 3300016789 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 14592574 18001 4 7 6 14 0.0 Metatranscriptome 3300049834 *Microbiome Permanent Draft Biofilm microbial communities of laboratory-scale, methanol-fed denitrifying cultures Lab-enriched, denitrifying biofilm microbial community from biofilm cultures in Laval, Quebec, Canada - 900nitrate30C McGill University and Genome Quebec Innovation Centre 3300049834 Metatranscriptome Analysis Trinity v. 2.9.1 No Yes richard.villemur@iaf.inrs.ca Richard Villemur No Engineered Bioreactor Unclassified Denitrification Unclassified Biofilm 45.54491579 -73.71990935 31018707 69185 38 4 78 9 0.0 Metatranscriptome 3300036108 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen9, Rep 3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036108 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 8152610 11735 3 0 12 1 SRX8382825 Unrestricted 362.75 Metatranscriptome 3300030754 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Wood GP-1B (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030754 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dcullen@wisc.edu; francis.martin@inrae.fr Daniel Cullen; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 45.7544 -113.9094 360735595 989335 1255 819 2244 1252 SRX3343487 Unrestricted 0.0 Metatranscriptome 3300030576 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cb9 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030576 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 305756430 665656 158 262 555 679 SRX5245086 Unrestricted 0.0 Metatranscriptome 3300056963 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Western Region, Iceland - Sphagnum teres C2_TE_ICE (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056963 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 181703380 365794 203 126 552 625 Unrestricted 65.0 Metatranscriptome 3300032823 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_05JUN2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032823 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.3757 154121017 267861 57 24 79 143 SRX7519526 Unrestricted 93.23 Metatranscriptome 3300017066 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from East China Sea in ESM medium, 20 C, 35 psu salinity and 222 ?mol photons light - Lotharella amoeboformis CCMP 2058 (MMETSP0042_2) National Center for Genome Resources 3300017066 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 26.45291 127.80296 31537073 30317 7 12 8 22 0.0 Metatranscriptome 3300041681 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_283 MetaT AgResearch, New Zealand, Mosgeil 3300041681 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 71148755 159986 315 101 1857 181 0.0 Metatranscriptome 3300004495 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 99_LOW12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004495 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 17865398 39379 63 12 227 39 SRX2780169 Unrestricted 0.0 Metatranscriptome 3300041580 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_491 MetaT AgResearch, New Zealand, Mosgeil 3300041580 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 59505280 136089 497 62 2448 158 0.0 Metatranscriptome 3300004627 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI054_200m_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004627 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 68210478 193720 2971 700 8686 1773 Unrestricted 0.0 Metatranscriptome 3300052367 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_125 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052367 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 55322517 145840 113 150 970 809 Unrestricted 167.6 Metatranscriptome 3300009586 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_11_14_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009586 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment Wetland 41.224 -82.304 108361691 231584 415 2401 27556 15042 SRX2525132 Unrestricted 0.0 Metatranscriptome 3300002674 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI074_10m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002674 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 12612865 31498 64 50 124 769 Unrestricted 0.0 Metatranscriptome 3300012722 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES163 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012722 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 175139560 359990 116 216 906 4074 SRX3527340 Unrestricted 0.0 Metatranscriptome 3300052893 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 128-Pos ControlDay63 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052893 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 116250191 247061 15 2 74 13 Unrestricted 44.12 Metatranscriptome 3300010173 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1700_B MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010173 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 6973890 17989 944 0 3290 4 SRX2521680, SRX2521679 Unrestricted 0.0 Metatranscriptome 3300009243 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from Amazon river, Brazil - RCM13 University of Georgia 3300009243 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic River Freshwater Unclassified River water 544938277 1690746 197 247 6051 2543 SRX861017 0.0 Metatranscriptome 3300021270 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.593 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021270 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.313 -123.997 34262212 73607 270 574 3641 5009 SRX4018162 Unrestricted 0.0 Metatranscriptome 3300049462 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_10 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300049462 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 268875798 606904 336 98 1054 473 Unrestricted 34.52 Metatranscriptome 3300030622 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE044SO (Eukaryote Community Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300030622 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2937 -71.1771 503307159 1116082 81 83 1867 559 SRX4391327, SRX4391326 Unrestricted 0.0 Metatranscriptome 3300032845 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_05JUN2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032845 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.3757 81577082 138513 47 20 72 127 SRX7519519 Unrestricted 65.29 Metatranscriptome 3300004519 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 80_HOW10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004519 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 14593104 33744 53 55 151 260 SRX4921653 Unrestricted 0.0 Metatranscriptome 3300008659 *Microbiome Permanent Draft Microbial communities of corn and soybean rhizosphere soil from Ohio, USA Microbial communities of corn rhizosphere soil from Ohio, USA - Corn_Powermax_2b Auburn University 3300008659 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Plants Rhizosphere Roots Soil Rhisosphere soil 5795913 23271 446 189 16059 1915 SRX1078299 0.0 Metatranscriptome 3300034660 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034660 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 255253281 583797 416 1357 6179 7306 SRX7572528 Unrestricted 23.8 Metatranscriptome 3300011282 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaT_SC_2012 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011282 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment watersheds 41.5935 -78.5142 18320284 44036 65 697 7396 6699 SRX3195629 Unrestricted 0.0 Metatranscriptome 3300040760 *Microbiome Finished Lab enriched marine microbial communities from the Bohai Gulf, China Lab enriched marine microbial communities from the Bohai Gulf, China - COH Hebei Normal University of Science &Technology 3300040760 Metatranscriptome Analysis Trinity v. 2.4.0 released by Si Li No Yes jackeikee@aliyun.com Si Li No Environmental Aquatic Gulf Marine Unclassified Marine 38.26 118.24 193196204 502634 166 378 736 1363 0.0 Metatranscriptome 3300041435 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass leaf microbial community from Lincoln, Canterbury, New Zealand - RGL18_12 MetaT AgResearch, New Zealand, Mosgeil 3300041435 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 8899555 15680 163 163 577 404 0.0 Metatranscriptome 3300008662 *Microbiome Permanent Draft Microbial communities from the microbial mats in Mushroom Springs at Yellowstone National Park, USA Microbial communities from the microbial mats in Mushroom Springs at Yellowstone National Park, USA - time_0_00 Pennsylvania State University 3300008662 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Thermal springs 497798 1155 0 0 0 0 SRX233537 0.0 Metatranscriptome 3300019196 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041406BS (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019196 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 100176046 215028 18 42 313 1079 SRX3921590 Unrestricted 0.0 Metatranscriptome 3300031899 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Metatranscriptome of bovine rumen microbial communities from UC Davis, California, United States - 0_2496_0518 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031899 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen 38.5357 -121.7593 550485285 1073717 5 12 51 96 SRX5812520 Unrestricted 15.0 Metatranscriptome 3300017226 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no Na2SiO3, 25 C, 34 psu salinity and 624 ?mol photons light - Symbiodinium sp. Mp (MMETSP1125) National Center for Genome Resources 3300017226 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 44479157 60418 23 7 22 8 0.0 Metatranscriptome 3300019219 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA - AD_UKC052_MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019219 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 42.12 -87.65 151503045 327414 105 159 11739 1391 SRX4809103 Unrestricted 0.0 Metatranscriptome 3300016936 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in K/2 ET medium, 20 C, 35 psu salinity and 666 ?mol photons light - Chrysoculter rhomboideus RCC 1486 (MMETSP1335) National Center for Genome Resources 3300016936 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 38.11 141.07 16069264 22593 2 1 4 1 0.0 Metatranscriptome 3300052922 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MT_260218 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052922 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 97014153 183019 12 13 557 31 Unrestricted 0.0 Metatranscriptome 3300049801 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Metatranscriptome of woodchip biofilm microbial communities from lab scale WBRs in New York, USA - hf_drw_p2_t6_h16_prok (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049801 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 300149053 663989 130 106 1231 604 Unrestricted 27.55 Metatranscriptome 3300010191 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1900_T MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010191 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 106044667 265975 34 2 366 11 SRX2521302, SRX2521301 Unrestricted 0.0 Metatranscriptome 3300008687 *Microbiome Permanent Draft Eukaryotic communities of Beech Litter from forest soil in Germany Eukaryotic communities of Beech Litter from forest soil in Germany - LitterTranscript_20121 University of Bayreuth 3300008687 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Terrestrial Temperate forest Soil O horizon/Organic Forest soil 49.926 10.569 36292253 103055 14 24 334 155 ERX238067 0.0 Metatranscriptome 3300003743 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_80_12H Marine Biological Laboratory 3300003743 Metatranscriptome Analysis CLC Genomics WB7 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 1875723 5614 48 2 119 7 0.0 Metatranscriptome 3300010078 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_0_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010078 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 31853130 73329 130 634 23529 5181 Unrestricted 0.0 Metatranscriptome 3300030594 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO141-VCO089SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030594 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes francis.martin@inrae.fr; fmartin@nancy.inra.fr Francis M. Martin; Francis M. MARTIN No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2779 -71.0916 331606812 759508 100 87 1654 544 SRX4011321 Unrestricted 0.0 Metatranscriptome 3300052735 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MT_130918 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052735 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 11296164 26256 7 17 485 55 Unrestricted 0.0 Metatranscriptome 3300022371 *Microbiome Permanent Draft Anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States Metatranscriptome of anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States - LAC_MetaT_9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022371 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes alvarez@ce.berkeley.edu Lisa Alvarez-Cohen No Engineered Bioreactor Unclassified Anaerobic Unclassified anaerobic bioreactor biomass 37.8719 -122.2585 53836312 90619 3 4 87 34 SRX4020300 Unrestricted 0.0 Metatranscriptome 3300038446 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Metatranscriptome of marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_3500m_C2_0cm2cm (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038446 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.6077 -122.6196 176382961 383717 484 2193 2885 10333 SRX9141400 Unrestricted 56.01 Metatranscriptome 3300019007 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_039 - TARA_N000000011 (ERX1782393-ERR1712012) Canada's Michael Smith Genome Sciences Centre 3300019007 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 18.5667 66.522 746710764 1445035 60 51 278 644 0.0 Metatranscriptome 3300012870 *Microbiome Permanent Draft Synthetic bacterial communities of pure cultures isolated from sediment of Lake Washington, USA Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under low oxygen conditions - MT methane_oxidizing 4strains_48hour-b (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012870 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes milachis@u.washington.edu Ludmila Chistoserdova No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 47.6553 -122.3035 13790814 35144 1 0 203 1 SRX3015534 Unrestricted 0.0 Metatranscriptome 3300020013 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041406CT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300020013 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 184416243 381038 140 323 1911 4652 SRX3921592 Unrestricted 0.0 Metatranscriptome 3300020094 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 250-2.7um, replicate b, metaT Georgia Genomics Facility 3300020094 Metatranscriptome Analysis Trinity 2.06 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 13774568 43066 6432 989 14778 3171 0.0 Metatranscriptome 3300018832 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Eukaryotic communities of water from different depths collected during the Tara Oceans expedition - TARA_N000000852 (ERX1782372-ERR1712031) Genoscope 3300018832 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ocean water 148701306 466366 52 16 237 302 ERX1782166, ERX1782372, ERX1086441 0.0 Metatranscriptome 3300016903 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Sargasso Sea in L1 medium with NH4Cl, 20 C, 32 psu salinity and 505 ?mol photons light - Helicotheca tamesis CCMP 826 (MMETSP1171) National Center for Genome Resources 3300016903 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 30.0 -60.0 13205699 18937 15 13 24 26 0.0 Metatranscriptome 3300032411 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day7_8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032411 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 35531129 58794 11 1 67 14 SRX6857178 Unrestricted 177.45 Metatranscriptome 3300012935 *Microbiome Permanent Draft Polar marine prokaryotic and eukaryotic communities from Antarctica during spring seasonal transition Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Arthur Harbor ice station, Antarctica - RNA5.ICE_1m.20151110 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012935 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bowmanjs@ldeo.columbia.edu Jeff Bowman Yes Environmental Aquatic Unclassified Marine Unclassified Polar marine -64.7711 -64.056 439350940 978760 2348 829 15259 22965 SRX3379499 Unrestricted 0.0 Metatranscriptome 3300031362 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_D6_0mM_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031362 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 11294498 18296 1 0 1 1 SRX6408063 Unrestricted 41.13 Metatranscriptome 3300006601 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_H2B_03_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006601 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 205827872 565441 652 778 2904 2141 SRX2752332 Unrestricted 0.0 Metatranscriptome 3300007340 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S5 c16 DCM_A metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007340 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 148987501 391064 3864 2681 9798 8288 SRX3196604 Unrestricted 0.0 Metatranscriptome 3300057138 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T1_1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300057138 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 142823442 209792 27 14 288 90 Unrestricted 0.0 Metatranscriptome 3300028163 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0743-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028163 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 103753902 168487 19 64 11 63 SRX5254189 Unrestricted 37.96 Metatranscriptome 3300025744 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepB_0h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300025744 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 79971992 165916 36 50 222 393 SRX4547620 Unrestricted 22.8 Metatranscriptome 3300052382 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_171 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052382 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 167669555 421064 296 202 1577 1178 Unrestricted 63.75 Metatranscriptome 3300030535 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO749-VDE026SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030535 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2704 -71.2106 252730504 572346 120 118 2055 1706 SRX4011342 Unrestricted 0.0 Metatranscriptome 3300008646 *Microbiome Permanent Draft Microbial communities of saline water collected from the North Sea in Germany Microbial communities of saline water collected from the North Sea in Germany - HE327_3a Goettingen Genomics Laboratory 3300008646 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified North sea 54.4223 7.6833 2805667 10890 221 211 1454 1251 0.0 Metatranscriptome 3300066458 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Metatranscriptome of woodchip biofilm microbial communities from lab scale WBRs in New York, USA - hf_cs_p2_t0_h0_prok (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300066458 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 130099190 323757 137 103 1457 571 Unrestricted 0.0 Metatranscriptome 3300046285 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_5_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046285 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 101596045 161566 3 0 45 0 Restricted 126.4 Metatranscriptome 3300004401 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 77 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004401 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 46512012 163149 1937 817 6062 1601 Unrestricted 0.0 Metatranscriptome 3300019174 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLA3 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019174 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified Plant litter 49.0431 13.617 10251209 20382 42 409 1175 2682 SRX5229539, SRX3937174 Unrestricted 0.0 Metatranscriptome 3300032496 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of Cow rumen rumen associated fungal communities from Illinois, USA - Cow Y-3 switchgrass (Eukaryote Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032496 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Cow rumen associated 40.102108 -88.227299 55096459 103138 2 32 13 55 SRX3338961 Unrestricted 0.0 Metatranscriptome 3300030978 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030978 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 59.9992 10.7901 21786741 47568 225 279 925 1389 SRX5351414 Unrestricted 0.0 Metatranscriptome 3300022513 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022513 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 107817375 257837 317 607 6981 4480 SRX4406835 Unrestricted 0.0 Metatranscriptome 3300016757 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/100 medium with amended seawater, at 20 C, 28 psu salinity and 637 ?mol photons light - Oxyrrhis marina CCMP 1795 (MMETSP0452_2) National Center for Genome Resources 3300016757 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 3681794 7633 0 0 1 2 0.0 Metatranscriptome 3300006366 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006366 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 77959343 255288 15201 6729 39404 18350 SRX3028901 Unrestricted 0.0 Metatranscriptome 3300032724 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Plim5_28May_deep (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032724 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 564665454 997136 131 62 226 669 SRX6411380 Unrestricted 0.0 Metatranscriptome 3300024457 *Microbiome Permanent Draft Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Soil microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B3.stcc.R1 re-analysis QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300024457 Metatranscriptome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes colemanderr@gmail.com Devin Coleman-Derr No Environmental Terrestrial Unclassified Soil Agricultural land field soil 36.339058 -120.12031 8845536 16619 566 816 4033 2615 0.0 Metatranscriptome 3300018585 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_046 - TARA_N000000269 (ERX1782265-ERR1712044) Canada's Michael Smith Genome Sciences Centre 3300018585 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -0.6625 73.1611 36513256 87939 4 4 48 171 0.0 Metatranscriptome 3300016830 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, at 22 C, 21 psu salinity and 434 ?mol photons light - Rhodella maculata CCMP 736 (MMETSP0314) National Center for Genome Resources 3300016830 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 16366676 24569 24 15 42 26 0.0 Metatranscriptome 3300030853 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA8 Emin (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030853 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7184 6.3471 544032772 1347948 4649 1129 9321 2778 SRX3345471 Unrestricted 0.0 Metatranscriptome 3300031166 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_D6_16mM_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031166 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 20171551 31385 3 1 1 7 SRX6408547 Unrestricted 43.45 Metatranscriptome 3300011027 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 70 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011027 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 16107846 39391 70 138 4874 785 Unrestricted 0.0 Metatranscriptome 3300047593 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_7_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047593 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 59289504 98200 1 0 22 3 Restricted 221.26 Metatranscriptome 3300018944 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_124 - TARA_N000002043 (ERX1789675-ERR1719391) Canada's Michael Smith Genome Sciences Centre 3300018944 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -9.1508 -140.4969 415879536 907446 3 23 2 110 0.0 Metatranscriptome 3300003725 *Microbiome Permanent Draft Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, for analyzing deforestation at different spatial scales Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A01 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003725 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes nusslein@microbio.umass.edu Nusslein, Klaus, Klaus Nusslein No Environmental Terrestrial Tropical forest Soil Unclassified Tropical rainforest soil -10.0 -62.0 9526292 20126 507 875 4339 2440 SRX2566805 Unrestricted 0.0 Metatranscriptome 3300010116 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_24_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010116 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 72005446 168807 184 743 14625 6260 Unrestricted 0.0 Metatranscriptome 3300056957 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Vasterbotten County, Sweden - Sphagnum lindbergii 19C_LI_DE (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056957 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.183 19.5578 323280595 685428 311 171 826 690 Unrestricted 48.05 Metatranscriptome 3300038733 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil microbial communities from Duke University greenhouse, North Carolina, United States - H57 wSuillus Nitrogen (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038733 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Greenhouse Soil Unclassified soil 36.0 -78.0 6145378 14378 14 81 358 713 SRX8863036 Unrestricted 25.17 Metatranscriptome 3300049127 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_A_0_control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049127 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 191381057 452345 278 141 1509 1049 Unrestricted 52.9 Metatranscriptome 3300016975 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in Aquil nutrients amended seawater, 60nM total Fe, at 20 C, 35 psu salinity and 716 ?mol photons light - Thalassiosira weissflogii CCMP 1336 (MMETSP0879) National Center for Genome Resources 3300016975 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 34402913 33342 3 1 1 1 0.0 Metatranscriptome 3300030882 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030882 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 59.997 10.7902 35385594 83078 168 160 693 1065 SRX5351810 Unrestricted 0.0 Metatranscriptome 3300016864 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in K medium with Eastern Pacific seawater w/o silicate, 6 C, 35 psu salinity and 365 ?mol photons light - Picocystis salinarum CCMP 1897 (MMETSP0807_2) National Center for Genome Resources 3300016864 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.78 -122.35 15685948 15683 3 2 6 3 0.0 Metatranscriptome 3300035301 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R1103S20 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300035301 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0387 156011830 323893 409 976 7991 2841 SRX9139990, SRX9139989 Unrestricted 0.0 Metatranscriptome 3300041476 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover leaf microbial community from Lincoln, Canterbury, New Zealand - WCL17_6 MetaT AgResearch, New Zealand, Mosgeil 3300041476 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 2622681 4655 63 31 84 37 0.0 Metatranscriptome 3300017042 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in L1 medium with NH4Cl, 24 C, 32 psu salinity and 486 ?mol photons light - Chrysoreinhardia sp. CCMP2950 (MMETSP1164) National Center for Genome Resources 3300017042 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 22792686 29352 3 2 7 3 0.0 Metatranscriptome 3300012472 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012472 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 37.1043 -76.1811 80266741 160761 270 302 2262 5483 SRX3007421 Unrestricted 0.0 Metatranscriptome 3300002696 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_100m_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002696 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 65467345 156301 135 85 704 1196 Unrestricted 0.0 Metatranscriptome 3300026503 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 91R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026503 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 267795162 551544 157 27 208 429 SRX4796138 Unrestricted 22.73 Metatranscriptome 3300052773 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_83 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052773 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 52696648 136504 169 141 645 778 Unrestricted 82.58 Metatranscriptome 3300016800 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Bass Strait in L1 medium, 0 C, 32 psu salinity and 737 ?mol photons light - Fibrocapsa japonica CCMP 1661 (MMETSP1339) National Center for Genome Resources 3300016800 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal -37.86 144.93 13529952 20579 12 12 7 14 0.0 Metatranscriptome 3300003292 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome C0912_C27A4_80 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003292 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 35.7899 -122.3199 17817178 41516 30 8 217 415 SRX2555014 Unrestricted 0.0 Metatranscriptome 3300017089 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L/25 medium, at 18 C, 32 psu salinity and 473 ?mol photons light - Gephyrocapsa oceanica RCC 1303 (MMETSP1364) National Center for Genome Resources 3300017089 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 31742680 42581 3 6 3 11 0.0 Metatranscriptome 3300031157 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_L6_4mM_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031157 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 19152982 31453 0 0 1 1 SRX5783519 Unrestricted 53.52 Metatranscriptome 3300041745 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_46 MetaT AgResearch, New Zealand, Mosgeil 3300041745 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 12443383 26709 45 24 336 58 0.0 Metatranscriptome 3300031068 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031068 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 39098742 77312 58 30 66 258 SRX5794230 Unrestricted 19.98 Metatranscriptome 3300030849 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB4 Emin (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030849 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7585 6.3578 378111729 1017336 7718 1396 17322 4326 SRX3351289 Unrestricted 0.0 Metatranscriptome 3300008438 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy - t10.CO.RNAseq.exp1 University of Naples 3300008438 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Cheese 17277 58 5 0 45 1 0.0 Metatranscriptome 3300037736 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_OW2_C1_D3_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037736 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 91088486 179698 315 1986 2414 4867 SRX8889745 Unrestricted 181.01 Metatranscriptome 3300006357 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006357 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Intertidal zone Marine Estuary Aqueous 39.283 -75.3633 316602297 862956 4031 8949 10392 25352 SRX2522112 Unrestricted 0.0 Metatranscriptome 3300016766 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041409AS metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016766 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 340385257 737384 36 145 327 2421 SRX3781465 Unrestricted 0.0 Metatranscriptome 3300046612 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-115 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046612 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4604 -64.2162 106915652 247524 841 35 1541 664 Unrestricted 16.32 Metatranscriptome 3300022505 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-O (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022505 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 81989349 183741 595 872 10737 5949 SRX4401520 Unrestricted 0.0 Metatranscriptome 3300017245 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Gulf of California (Sea of Cortes) in ASW medium, resuspended in ASW w/o nitrate, 20 C and 643 ?mol photons light - Extubocellulus spinifer CCMP 396 (MMETSP0698) National Center for Genome Resources 3300017245 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 31.3172 -113.56 41800785 40227 2 4 1 3 0.0 Metatranscriptome 3300059672 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_12 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059672 Metatranscriptome Analysis megahit v. 2021-11-18 18:41:18 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 563492892 1289996 458 156 1429 646 Unrestricted 0.0 Metatranscriptome 3300005385 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_2000_B MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005385 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 8104428 25645 749 1 1770 3 SRX2521683, SRX2521684 Unrestricted 0.0 Metatranscriptome 3300002671 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF130 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002671 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 10055399 28660 136 429 630 1775 SRX2014427 Unrestricted 0.0 Metatranscriptome 3300021942 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-61M (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021942 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 157451879 309071 69 56 118 200 SRX5203235 Unrestricted 0.0 Metatranscriptome 3300010018 *Microbiome Permanent Draft Black Band Disease transitions Microbial communities of stony corals with Black-band disease (BBD) from Carrie Bow Cay Field Station, Belize; BBD Transitions coral #1 sample H1 University of Maryland 3300010018 Metatranscriptome Analysis IDBA-Tran v1.1.1 released per JGI data release policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified marine 16.80288 -88.08213 220459630 339373 2 6 1 12 0.0 Metatranscriptome 3300013068 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES062 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013068 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.041 -89.686 63711047 117521 31 36 869 2094 SRX3010828 Unrestricted 0.0 Metatranscriptome 3300030573 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO143-VCO036SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030573 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes francis.martin@inrae.fr; fmartin@nancy.inra.fr Francis M. Martin; Francis M. MARTIN No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2881 -71.1837 468452363 1044876 106 110 1940 637 SRX4011319 Unrestricted 0.0 Metatranscriptome 3300007239 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 7/17/14 B2 RNA (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007239 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ebyoung@uwm.edu Erica Young, Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 206365719 527371 1498 1635 4098 7299 SRX5628649 Unrestricted 0.0 Metatranscriptome 3300032826 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_26JUN2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032826 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3951 -85.3736 43397660 72161 35 28 89 153 SRX7519606 Unrestricted 29.57 Metatranscriptome 3300017063 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, low P, at 18 C, 32 psu salinity and 248 ?mol photons light - Heterosigma akashiwo CCMP 2393 (MMETSP0295) National Center for Genome Resources 3300017063 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 24548803 40537 11 2 14 4 0.0 Metatranscriptome 3300006717 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP0548 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006717 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -26.95 -21.4 109800272 367191 2696 3684 6012 11728 SRX3299140 Unrestricted 0.0 Metatranscriptome 3300009583 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_9_15_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009583 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment Wetland 41.224 -82.304 100621179 211324 595 1611 49520 13077 SRX2525173 Unrestricted 0.0 Metatranscriptome 3300016915 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in L1 medium with seawater, 20 C, 33 psu salinity and 485 ?mol photons light - Phaeocystis cordata RCC 1383 (MMETSP1465) National Center for Genome Resources 3300016915 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 40.9 14.15 12646756 20895 48 17 111 48 0.0 Metatranscriptome 3300018802 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_123 - TARA_N000001996 (ERX1789649-ERR1719297) Canada's Michael Smith Genome Sciences Centre 3300018802 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.9056 -140.2792 171172544 430080 1 15 6 156 0.0 Metatranscriptome 3300036431 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Omics_23_031718 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036431 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 169681647 369112 843 64 1703 1572 SRX8834691 Unrestricted 24.91 Metatranscriptome 3300050588 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_9A1_100318_1536 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050588 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@dbi.udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 196814806 458313 365 60 785 310 Unrestricted 67.39 Metatranscriptome 3300021860 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021860 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment sediment 41.1752 -78.4168 415073716 996430 622 2468 21373 19789 SRX4009985 Unrestricted 0.0 Metatranscriptome 3300033542 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_18SEP2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300033542 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.372 486220457 872703 128 104 220 558 SRX7519901 Unrestricted 25.88 Metatranscriptome 3300012412 *Microbiome Permanent Draft Polar marine prokaryotic and eukaryotic communities from Antarctica during spring seasonal transition Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 192hr light incubation - RNA24.B_192.20151118 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012412 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bowmanjs@ldeo.columbia.edu Jeff Bowman Yes Environmental Aquatic Unclassified Marine Unclassified Polar marine -64.775 -64.053 332686337 666614 321 91 2963 7958 SRX3379824 Unrestricted 0.0 Metatranscriptome 3300035575 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - 16B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035575 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4211 16.6688 97963956 197390 421 970 4573 3713 SRX8209304 Unrestricted 34.34 Metatranscriptome 3300010176 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0300_B MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010176 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 34475405 88680 4828 1 26805 39 SRX2521670, SRX2521671 Unrestricted 0.0 Metatranscriptome 3300041723 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_273 MetaT AgResearch, New Zealand, Mosgeil 3300041723 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 15356314 32615 218 142 1377 318 0.0 Metatranscriptome 3300017348 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of freshwater eukaryotic communities from Brookside Botanical Gardens, Wheaton, Maryland in ATCC medium 802, 20 C and 592 ?mol photons light - Platyophrya macrostoma WH (MMETSP0127) National Center for Genome Resources 3300017348 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 41245590 68721 17 2 22 1 0.0 Metatranscriptome 3300019037 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_068 - TARA_N000000703 (ERX1782146-ERR1712183) Canada's Michael Smith Genome Sciences Centre 3300019037 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -31.027 4.6802 727359602 1785527 132 50 488 528 0.0 Metatranscriptome 3300022396 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.633 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022396 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.302 -123.036 321776581 798818 260 961 3541 3132 SRX4018163 Unrestricted 0.0 Metatranscriptome 3300061828 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 54_sorghum_1_T5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061828 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 31065101 82728 82 89 782 722 Unrestricted 188.72 Metatranscriptome 3300021895 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-13 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021895 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine -7.39366 -4.9045 89761634 187613 74 90 174 290 SRX6381274 Unrestricted 0.0 Metatranscriptome 3300030751 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PO 2B (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030751 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 288844986 903366 2560 565 4615 1933 SRX2753404 Unrestricted 0.0 Metatranscriptome 3300012518 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012518 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 37.0306 -76.0464 249757208 546689 397 721 1833 10971 SRX3007439 Unrestricted 0.0 Metatranscriptome 3300046324 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_6_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046324 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 19087739 39294 1 0 10 1 Restricted 261.67 Metatranscriptome 3300052650 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Southern Region, Iceland - Sphagnum teres 10_TE_ICE (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052650 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.11159 -20.56101 220038820 462469 275 149 732 753 Unrestricted 72.86 Metatranscriptome 3300065370 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MT_210818 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300065370 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 116225859 253187 20 17 249 43 Unrestricted 0.0 Metatranscriptome 3300023679 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 32R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023679 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 64104859 138661 105 52 640 1232 SRX4474670 Unrestricted 35.91 Metatranscriptome 3300046082 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-208 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046082 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4604 -64.2162 179113051 413247 716 42 1375 722 Unrestricted 21.86 Metatranscriptome 3300019114 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS856_ls5 J. Craig Venter Institute (JCVI) 3300019114 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 104485353 347194 114 31 234 368 0.0 Metatranscriptome 3300002878 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI074_150m_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002878 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 30883810 67332 31 29 380 280 Unrestricted 0.0 Metatranscriptome 3300030918 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_S14_5 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030918 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -3.9 -28.5 291883600 992470 191 480 407 1505 SRX3342250 Unrestricted 0.0 Metatranscriptome 3300009569 *Microbiome Permanent Draft Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea North East Pacific Ocean microbial community - Bloomer_DOMexp_control_0hr_metatranscriptome Massachusetts Institute of Technology 3300009569 Metatranscriptome Analysis Greengenes NAST aligner, Ribosomal Database Project (RDP) naive Bayesian classifier released per JGI data release policy No Yes sarabc@mit.edu Sara Collins No Environmental Aquatic Epipelagic Marine Unclassified open ocean 23.214666 -159.136166 123276592 485628 45232 1922 410726 10148 0.0 Metatranscriptome 3300030950 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Mineral N3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030950 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr; ake.olson@slu.se Francis M. Martin; Ake Olson No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 476152193 1284964 4542 750 9033 1356 SRX3345083 Unrestricted 0.0 Metatranscriptome 3300016933 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Woods Hole, Massachussetts in DVV freshwater, 18 C, 0 psu salinity and 401 ?mol photons light - Dinobryon sp. UTEXLB2267 (MMETSP0812) National Center for Genome Resources 3300016933 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 41.57595 -70.64038 25100108 31414 8 9 11 5 0.0 Metatranscriptome 3300019193 *Microbiome Permanent Draft Roseovarius nubinhibens ISM and Alexandrium tamarense modeled microbial communities from the University of Georgia, USA Metatranscriptome of Roseovarius nubinhibens ISM and Alexandrium tamarense co-culture from University of Georgia, USA - T8_LowN_B metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019193 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes mmoran@uga.edu Mary Ann Moran No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Laboratory simulated co-culture 33.933 -83.366 40696211 167648 0 0 321 27 SRX3161827 Unrestricted 0.0 Metatranscriptome 3300017223 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in GSe medium with ammonium, 22 C, 32 psu salinity and 106 ?mol photons light - Pelagococcus subviridis CCMP 1429 (MMETSP0882) National Center for Genome Resources 3300017223 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 30.8333 -136.8333 26596630 37586 2 1 4 1 0.0 Metatranscriptome 3300026395 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0935-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026395 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 80176562 134850 21 180 8 52 SRX4796407 Unrestricted 29.45 Metatranscriptome 3300036579 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8WP15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036579 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 233366134 483182 680 1748 2801 5800 SRX8379868 Unrestricted 47.07 Metatranscriptome 3300043275 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - FS5.Jun19.R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043275 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.5326 -110.7972 8-9 49216197 112491 18 1 265 1 SRX10106103 Unrestricted 60.58 Metatranscriptome 3300018740 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_123 - TARA_N000001996 (ERX1789647-ERR1719307) Canada's Michael Smith Genome Sciences Centre 3300018740 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.9056 -140.2792 141595607 355684 1 16 9 132 0.0 Metatranscriptome 3300035304 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R1105S20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035304 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0387 66266448 131982 506 815 11182 2706 SRX8236729 Unrestricted 79.95 Metatranscriptome 3300016861 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 18 C, 32 psu salinity and 492 ?mol photons light - Chaetoceros affinis CCMP 159 (MMETSP0090) National Center for Genome Resources 3300016861 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 24880738 26442 4 2 15 1 0.0 Metatranscriptome 3300034363 *Microbiome Permanent Draft Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S96 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034363 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes colin.averill@usys.ethz.ch Colin Averill No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 36.0 -78.0 126657319 267019 5 60 269 277 SRX7587311 Unrestricted 107.04 Metatranscriptome 3300046158 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-125 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046158 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4479 -64.2031 93023984 199420 728 25 1159 668 Unrestricted 16.64 Metatranscriptome 3300021355 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 150m 12015 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021355 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.7468 -122.0193 511063075 1179061 540 273 44280 11799 SRX4010495 Unrestricted 0.0 Metatranscriptome 3300005489 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1800 MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005489 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 45130751 103525 993 52 3155 112 SRX2521849, SRX2521848 Unrestricted 0.0 Metatranscriptome 3300018619 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS855_ls4 J. Craig Venter Institute (JCVI) 3300018619 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 57283556 171177 45 14 119 140 0.0 Metatranscriptome 3300037775 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil microbial communities from Duke University greenhouse, North Carolina, United States - H5 noSuillus Control (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037775 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Greenhouse Soil Unclassified soil 36.0 -78.0 70593091 153303 14 39 115 315 SRX8863116 Unrestricted 54.92 Metatranscriptome 3300046067 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-172 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046067 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4841 -64.2273 95096665 235832 730 33 1204 527 Unrestricted 20.49 Metatranscriptome 3300046110 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-216 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046110 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4604 -64.2162 116785023 268451 476 26 923 473 Unrestricted 20.07 Metatranscriptome 3300016906 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in ESM medium with SW802, 23 C, 35 psu salinity and 431 ?mol photons light - Goniomonas sp. m (MMETSP0114) National Center for Genome Resources 3300016906 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Beach/Shore marine 46.5105 -63.4856 24601976 29551 4 1 1 1 0.0 Metatranscriptome 3300028166 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0690-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028166 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 174677863 320836 21 34 25 82 SRX5253974 Unrestricted 86.95 Metatranscriptome 3300019171 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLU2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019171 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified Plant litter 49.044 13.617 9145832 17800 16 317 527 1923 SRX3937008, SRX5229519 Unrestricted 0.0 Metatranscriptome 3300046545 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_1_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046545 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 40960698 60222 1 0 11 0 Restricted 537.61 Metatranscriptome 3300019098 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS684_0p1 J. Craig Venter Institute (JCVI) 3300019098 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 53310142 213208 2 2 112 137 0.0 Metatranscriptome 3300018527 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_144 - TARA_N000003179 (ERX1782218-ERR1712041) Canada's Michael Smith Genome Sciences Centre 3300018527 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 36.3698 -72.9669 17660727 49633 1 32 14 194 0.0 Metatranscriptome 3300018941 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_093 - TARA_N000001288 (ERX1789482-ERR1719320) Canada's Michael Smith Genome Sciences Centre 3300018941 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -34.0374 -73.09 466098202 904668 0 33 6 178 0.0 Metatranscriptome 3300004138 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF246 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004138 Metatranscriptome Analysis megahit v. 0.2.0 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.531427 -72.189946 159037758 589936 1469 745 6643 2902 SRX2014023 Unrestricted 0.0 Metatranscriptome 3300011085 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 71 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011085 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 109195420 245446 231 384 19365 2346 Unrestricted 0.0 Metatranscriptome 3300047610 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_7_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047610 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 32559706 58806 1 0 21 0 Restricted 289.69 Metatranscriptome 3300037638 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_M1_C2_D3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037638 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 43788018 79350 647 1741 6964 4846 SRX9383792 Unrestricted 194.65 Metatranscriptome 3300019279 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019279 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 349252053 831365 722 2022 47487 18170 SRX3939791 Unrestricted 0.0 Metatranscriptome 3300006363 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0600_B MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006363 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 60810126 158146 4343 20 11372 99 SRX2521676 Unrestricted 0.0 Metatranscriptome 3300012765 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Croche, Canada - C_131016_E_mt (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012765 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.8319 -72.5 128130299 289763 377 163 1339 4188 SRX3015181 Unrestricted 0.0 Metatranscriptome 3300037703 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Metatranscriptome of soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_July_plot5_rep3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037703 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6541 -80.6298 278860981 656747 849 630 5727 3230 SRX9139681 Unrestricted 26.75 Metatranscriptome 3300006604 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006604 Metatranscriptome Analysis megahit v. 0.2.0 No Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil 45.54 -73.72 667302488 2322484 97 92 230 242 SRX2522016 Unrestricted 0.0 Metatranscriptome 3300032414 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day2_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032414 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 27519213 48530 12 0 78 4 SRX6856325 Unrestricted 57.22 Metatranscriptome 3300016742 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011511BT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016742 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 255452684 557011 147 382 3266 7595 SRX3780734 Unrestricted 0.0 Metatranscriptome 3300009384 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from Amazon river, Brazil - RCM21 University of Georgia 3300009384 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic River Freshwater Unclassified River water 85372219 278800 314 155 2269 516 SRX864143 0.0 Metatranscriptome 3300004579 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 46_HOW7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004579 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 32867622 76093 202 291 819 738 SRX2780057 Unrestricted 0.0 Metatranscriptome 3300047596 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_7_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047596 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 43489773 79507 2 1 44 5 Restricted 203.84 Metatranscriptome 3300031163 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_L6_8mM_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031163 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 8363626 14746 3 0 0 1 SRX5783588 Unrestricted 54.26 Metatranscriptome 3300030856 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_S23_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030856 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 9.75 -55.3 567108945 1977291 1124 689 1858 2031 SRX3342407 Unrestricted 0.0 Metatranscriptome 3300011300 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S9 DCM_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011300 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 66400833 147925 104 42 2161 2971 SRX3196627 Unrestricted 0.0 Metatranscriptome 3300032016 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen6, Rep 2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032016 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 23231792 38842 7 0 54 0 SRX5359914 Unrestricted 24.79 Metatranscriptome 3300010135 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from Louisiana Shelf, Gulf of Mexico - GoM_2015_C6C_257_18m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010135 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 28.8679 -90.4764 101656472 219324 275 379 5540 4878 Unrestricted 0.0 Metatranscriptome 3300046227 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_5_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046227 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 71034394 115773 1 0 29 2 Restricted 231.0 Metatranscriptome 3300009022 *Microbiome Permanent Draft Eukaryotic communities from seawater of the North Pacific Subtropical Gyre Eukaryotic communities from seawater of the North Pacific Subtropical Gyre - HoeDylan_S1 Woods Hole Oceanographic Institution 3300009022 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ocean water 22.75 -158.0 1649180696 6713479 85 141 580 1535 0.0 Metatranscriptome 3300031189 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_L6_16mM_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031189 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 19106628 30835 1 0 0 2 SRX5783590 Unrestricted 51.74 Metatranscriptome 3300024548 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepB_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024548 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 235311528 467894 85 280 1243 2048 SRX4547760 Unrestricted 22.23 Metatranscriptome 3300021258 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States - S.445 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021258 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.178 -123.853 24471950 51833 153 877 5576 6240 SRX4016347 Unrestricted 0.0 Metatranscriptome 3300022374 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States - R1166 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022374 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 46.235 -123.909 79201424 164824 145 227 520 1847 SRX4015575 Unrestricted 0.0 Metatranscriptome 3300017057 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no silicate, 15 C, 29.4 psu salinity and 421 ?mol photons light - Heterosigma akashiwo CCMP 3107 (MMETSP0411) National Center for Genome Resources 3300017057 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 52.5758 -128.5003 19780676 39868 19 14 46 27 0.0 Metatranscriptome 3300010113 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_24_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010113 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 70410484 165460 68 520 5337 5285 Unrestricted 0.0 Metatranscriptome 3300017168 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, low N, at 15 C, 32 psu salinity and 282 ?mol photons light - Prymnesium polylepis CCMP 1757 (MMETSP0145) National Center for Genome Resources 3300017168 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 31099042 48676 1 5 2 5 0.0 Metatranscriptome 3300049804 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Metatranscriptome of woodchip biofilm microbial communities from lab scale WBRs in New York, USA - hf_cs_p2_t10_h100_prok (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049804 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 210975677 463566 55 63 672 302 Unrestricted 18.71 Metatranscriptome 3300010194 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0900_T MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010194 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 116686669 308874 33 0 406 6 SRX2521483, SRX2521484 Unrestricted 0.0 Metatranscriptome 3300030690 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 19_T1E_StrEL1 developmental time series (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030690 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 61573796 75646 35 39 412 438 SRX4646384 Unrestricted 0.0 Metatranscriptome 3300030591 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Bb3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030591 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 417331765 910696 136 111 1988 719 SRX4546945 Unrestricted 0.0 Metatranscriptome 3300006389 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Gel_03_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006389 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 215239932 545432 437 399 1302 837 SRX2752005 Unrestricted 0.0 Metatranscriptome 3300020091 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate a, metaT Georgia Genomics Facility 3300020091 Metatranscriptome Analysis Trinity 2.06 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.0 -64.66 29276406 89599 5778 1644 13604 4622 0.0 Metatranscriptome 3300036404 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R4 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300036404 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 280662482 660342 236 998 3876 4900 SRX8834022, SRX8834021 Unrestricted 0.0 Metatranscriptome 3300052445 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 90-S41Day7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052445 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 88764047 181684 38 0 132 22 Unrestricted 88.61 Metatranscriptome 3300002693 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_165m_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002693 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 51827826 111214 58 48 647 593 Unrestricted 0.0 Metatranscriptome 3300012398 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_24_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012398 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 177305044 425608 39 486 4093 4106 Unrestricted 0.0 Metatranscriptome 3300030665 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 4_T1E_3DKB8 developmental time series (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030665 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 71531779 96731 28 84 375 547 SRX4645832 Unrestricted 0.0 Metatranscriptome 3300049697 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MT_130918 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049697 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 110338303 231707 11 18 176 56 Unrestricted 86.04 Metatranscriptome 3300009541 *Microbiome Permanent Draft Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling - T5-LLNO3 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009541 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes milachis@u.washington.edu Ludmila Chistoserdova No Engineered Modeled Plant nodule Simulated communities (microbial mixture) Unclassified Methane-oxidizing 47.6193 -122.2449 4643496 16456 0 0 786 0 SRX2525511 Unrestricted 0.0 Metatranscriptome 3300048960 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 44 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048960 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.7703 -82.3517 7626571 14708 23 4 59 60 Restricted 123.6 Metatranscriptome 3300010006 *Microbiome Permanent Draft Black Band Disease transitions Microbial communities of stony corals with Black-band disease (BBD) from Carrie Bow Cay Field Station, Belize; BBD Transitions coral #2 sample B2 University of Maryland 3300010006 Metatranscriptome Analysis IDBA-Tran v1.1.1 released per JGI data release policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified marine 16.80288 -88.08213 19512071 41109 109 23 458 105 0.0 Metatranscriptome 3300007726 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS917_Marker33_RNA CLC_assembly Marine Biological Laboratory 3300007726 Metatranscriptome Analysis CLC genomics workbench, v. 7.0 released per JGI data release policy No Yes jhuber@mbl.edu, jhuber@whoi.edu Huber, Julie Huber No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse vent fluid, hydrothermal vents 45.9332 -129.9822 1113561 2427 53 4 564 7 0.0 Metatranscriptome 3300009719 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from Louisiana Shelf, Gulf of Mexico - GoM_2015_C6C_260_2m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009719 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 28.8679 -90.4764 7033440 14308 101 77 1427 917 Unrestricted 0.0 Metatranscriptome 3300016690 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES019 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016690 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 46.008 -89.701 81096161 167749 160 83 1349 3346 SRX3780229 Unrestricted 0.0 Metatranscriptome 3300034421 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen2, Rep 1 (Eukaryote Community Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300034421 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 8722147 15013 5 0 159 2 SRX7516958, SRX7516959 Unrestricted 0.0 Metatranscriptome 3300010138 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_11_14_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010138 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment Wetland 41.2239 -82.3039 103872807 232182 516 1738 35422 13743 SRX2525129 Unrestricted 0.0 Metatranscriptome 3300010404 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010404 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 38.0754 -76.1533 58989657 116888 209 110 1242 2098 SRX7212337 Unrestricted 0.0 Metatranscriptome 3300031872 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLU2 metaT (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031872 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified Plant litter 49.044 13.617 27096602 57397 46 391 435 1891 SRX3937008, SRX5229519 Unrestricted 0.0 Metatranscriptome 3300031154 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_D6_8mM_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031154 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 19649365 30076 2 0 2 7 SRX5783610 Unrestricted 29.71 Metatranscriptome 3300012768 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Montjoie, Canada - M_130710_M_mt (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012768 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.4091 -72.0994 150240963 317710 249 134 2066 8970 SRX3015193 Unrestricted 0.0 Metatranscriptome 3300006714 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S7 DCM_B metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006714 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 107601542 324684 3708 3230 8937 12058 SRX3196615 Unrestricted 0.0 Metatranscriptome 3300037613 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_M1_C1_D2_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037613 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 59409341 115230 306 1661 2932 4282 SRX9382713 Unrestricted 158.39 Metatranscriptome 3300059489 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of lake water microbial communities from Sandhills, Nebraska, United States - NSL_Island_2020 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059489 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.7342 -102.4104 111614452 252606 154 62 515 441 Unrestricted 55.02 Metatranscriptome 3300031381 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_L6_4mM_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031381 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 15208811 25012 1 1 3 4 SRX5783477 Unrestricted 38.82 Metatranscriptome 3300004786 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DN (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004786 Metatranscriptome Analysis megahit v. 0.2.0 No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 171817152 521382 1337 476 4651 2278 SRX2518311 Unrestricted 0.0 Metatranscriptome 3300052448 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 114-S77Day7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052448 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 130711283 251007 46 2 118 13 Unrestricted 112.4 Metatranscriptome 3300012395 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_8_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012395 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 161673213 385616 59 570 3256 4852 Unrestricted 0.0 Metatranscriptome 3300019220 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA - AD_UKC059_MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019220 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 41.53 -90.43 159952423 331552 43 95 6278 538 SRX4809093 Unrestricted 0.0 Metatranscriptome 3300017190 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in f/2 medium with seawater, 5 C, 35 psu salinity and 129 ?mol photons light - Fragilariopsis kerguelensis L2-C3 (MMETSP0907) National Center for Genome Resources 3300017190 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -48.1 -24.25 38560270 52353 3 1 3 1 0.0 Metatranscriptome 3300033618 *Microbiome Permanent Draft Characterization of microbial community from North Pond CORK fluids Aquifer fluid microbial communities from North Pond CORKs, Mid-Atlantic Ridge, Atlantic Ocean - Hole 1383C Deep RNA SIP 13C Marine Biological Laboratory 3300033618 Metatranscriptome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Aquatic Oceanic Marine Crustal Fluids Aquifer fluid 22.8 -46.05 1020824 1749 33 1 58 0 0.0 Metatranscriptome 3300030668 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 12_T2E_StrKB8 developmental time series (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030668 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 59328559 87569 21 51 1827 1144 SRX4646340 Unrestricted 0.0 Metatranscriptome 3300037694 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen6, Rep 1, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037694 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 39976146 41082 3 0 8 1 SRX8381191, SRX8381192 Unrestricted 0.0 Metatranscriptome 3300024545 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Colum_RepB_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024545 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 209882013 402184 58 274 816 1755 SRX4547783 Unrestricted 27.07 Metatranscriptome 3300004621 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor, Time D- 0min-Aerobic_ RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004621 Metatranscriptome Analysis megahit v. 0.2.0 No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 272145878 575813 259 1211 683 3689 SRX2518188 Unrestricted 0.0 Metatranscriptome 3300004520 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 87_LOW11 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004520 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 16892677 38427 102 86 547 227 SRX2725280 Unrestricted 0.0 Metatranscriptome 3300017165 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Sargasso Sea in f/2 medium with seawater and 400nM iron, 10.6uM silica, 25 C, 35 psu salinity and 146 ?mol photons light - Thalassiosira oceanica CCMP 1005 (MMETSP0972) National Center for Genome Resources 3300017165 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 33.1833 -65.25 32146771 34275 2 1 1 1 0.0 Metatranscriptome 3300016856 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Tasman Sea in L1 medium with NH4Cl, 20 C, 32 psu salinity and 423 ?mol photons light - Erythrolobus australicus CCMP 3124 (MMETSP1353) National Center for Genome Resources 3300016856 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -34.02 151.15 12104147 14880 6 7 5 8 0.0 Metatranscriptome 3300021951 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021951 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified groundwater sediment 38.9201 -106.9487 286654315 680454 216 1250 2822 10382 SRX4038479 Unrestricted 0.0 Metatranscriptome 3300046155 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-213 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046155 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4604 -64.2162 128013298 303224 346 21 627 212 Unrestricted 28.82 Metatranscriptome 3300019034 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_039 - TARA_B100000091 (ERX1399743-ERR1328123) Canada's Michael Smith Genome Sciences Centre 3300019034 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 18.5839 66.4727 390822148 1722738 34 50 97 508 0.0 Metatranscriptome 3300037778 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - F18NovM (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037778 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4316 16.6833 132021372 257315 118 839 735 2816 SRX9165168 Unrestricted 37.11 Metatranscriptome 3300018692 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_082 - TARA_N000001382 (ERX1782155-ERR1712153) Canada's Michael Smith Genome Sciences Centre 3300018692 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -47.1863 -58.2902 110036249 255526 83 6 186 204 0.0 Metatranscriptome 3300042149 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Metatranscriptome of seawater microbial communities from Western North Atlantic Ocean - Oce6_MesoR (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042149 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Unclassified Marine Unclassified seawater 35.0018 -73.5968 170963670 375587 261 61 682 1117 Unrestricted 25.85 Metatranscriptome 3300026398 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 58R_r (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026398 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 61436074 130690 198 31 304 692 SRX4796136 Unrestricted 28.3 Metatranscriptome 3300041502 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_7 MetaT AgResearch, New Zealand, Mosgeil 3300041502 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Unclassified Roots Unclassified White clover root -43.648506 172.343549 46330703 75686 249 223 1108 525 0.0 Metatranscriptome 3300046442 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_89_Fire (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046442 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1245 -81.3605 41564705 96941 161 195 1110 1085 Unrestricted 45.27 Metatranscriptome 3300042490 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_DW_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042490 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 49210851 67237 0 0 0 0 Unrestricted 279.71 Metatranscriptome 3300055151 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP3.1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055151 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 199382289 403845 23 40 173 249 Unrestricted 81.71 Metatranscriptome 3300043278 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - FS5.Jun17.R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043278 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.5326 -110.7972 8-9 83493455 168239 57 0 552 2 SRX10105709 Unrestricted 44.62 Metatranscriptome 3300008821 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of annulated tree boas from Steinhart Aquarium in San Francisco, USA - CAS05_Brain University of California, San Francisco 3300008821 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Brain Nervous system Unclassified Brain 8660125 23003 0 0 0 0 SRX170633 0.0 Metatranscriptome 3300004135 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF204 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004135 Metatranscriptome Analysis megahit v. 0.2.0 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.531427 -72.189946 120216724 413494 10074 1430 32787 4509 SRX2013857 Unrestricted 0.0 Metatranscriptome 3300050679 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae culture inoculated with mixed bacterial community from LLNL, Livermore, California, USA - f2_d2_A_S03 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050679 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 31995563 44701 3 0 7 8 Restricted 150.33 Metatranscriptome 3300011088 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 62 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011088 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 152810098 332684 278 803 18310 4266 Unrestricted 0.0 Metatranscriptome 3300028259 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0416-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028259 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 117515830 196745 46 69 8 99 SRX5250646 Unrestricted 91.68 Metatranscriptome 3300048842 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Metatranscriptome of soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR19 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048842 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.3476 -119.2808 18753780 21399 3 0 7 0 Unrestricted 53.46 Metatranscriptome 3300019060 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS680_3p0 J. Craig Venter Institute (JCVI) 3300019060 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 56.1664 16.378218 3062186 12179 33 28 646 727 0.0 Metatranscriptome 3300019117 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_131 - TARA_N000002348 (ERX1782351-ERR1711912) Canada's Michael Smith Genome Sciences Centre 3300019117 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 22.7598 -157.9568 151737774 371565 104 45 495 800 0.0 Metatranscriptome 3300006263 *Microbiome Permanent Draft Prairie soil microbial communities from Kansas, USA, after rainfall Prairie soil microbial communities from Kansas, USA, after rainfall - K12 Oregon State University 3300006263 Metatranscriptome Analysis VELVET 1.2.10, combine 23, 27, 31 released per JGI data release policy No Yes lzeglin@ksu.edu Lydia Zeglin No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.1038 -96.6133 25862 157 2 1 1 0 0.0 Metatranscriptome 3300020103 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate b, metaT Georgia Genomics Facility 3300020103 Metatranscriptome Analysis Trinity 2.06 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 29925195 78601 4572 652 10429 1856 0.0 Metatranscriptome 3300030861 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 4C (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030861 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 116432020 379106 6333 1140 13773 4527 SRX2752822 Unrestricted 0.0 Metatranscriptome 3300018709 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_041 - TARA_N000000073 (ERX1782278-ERR1712213) Canada's Michael Smith Genome Sciences Centre 3300018709 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 14.6059 69.9776 137395484 296148 20 28 107 399 0.0 Metatranscriptome 3300046548 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_1_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046548 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 50783391 79703 1 1 11 2 Restricted 213.27 Metatranscriptome 3300037052 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Growout1_T0_030718 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037052 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 350607610 739034 772 39 1248 936 SRX8834020 Unrestricted 25.55 Metatranscriptome 3300019095 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS694_3p0_dT J. Craig Venter Institute (JCVI) 3300019095 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 61757778 146455 108 336 193 489 0.0 Metatranscriptome 3300035578 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - 16K (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035578 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4336 16.6836 154775463 324045 254 441 2413 1739 SRX8209344 Unrestricted 31.4 Metatranscriptome 3300046064 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-163 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046064 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4757 -64.2279 58244220 138036 702 46 1173 655 Unrestricted 19.47 Metatranscriptome 3300049121 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 85 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049121 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.9364 -81.6542 1295409 2638 10 3 22 19 Restricted 133.15 Metatranscriptome 3300017345 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from North Sea in half strength K medium with seawater and selenite, 15 C, 32 psu salinity and 294 ?mol photons light - Azadinium spinosum 3D9 (MMETSP1037_2) National Center for Genome Resources 3300017345 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 57.0525 2.50056 78818062 113569 11 5 32 6 0.0 Metatranscriptome 3300021898 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-55S (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021898 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 98576184 192410 20 25 40 87 SRX5203111 Unrestricted 0.0 Metatranscriptome 3300061825 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 37_rapeseed_3_T0 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061825 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 97823273 258365 254 211 1513 1380 Unrestricted 67.52 Metatranscriptome 3300010272 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1700_T MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010272 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 152011065 404900 39 1 541 5 SRX2521355, SRX2521356 Unrestricted 0.0 Metatranscriptome 3300016918 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, no silicate, at 20 C, 35 psu salinity and 241 ?mol photons light - Rhodella maculata CCMP 736 (MMETSP0167) National Center for Genome Resources 3300016918 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 20541821 30652 6 2 17 6 0.0 Metatranscriptome 3300037676 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen6, Rep 2, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037676 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 33557294 36223 3 0 7 1 SRX8381189, SRX8381190 Unrestricted 0.0 Metatranscriptome 3300034813 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Metatranscriptome of Methylocaldum sp. 0917 culture communities from SDSU, California, USA - Exp#1 BR2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034813 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Engineered Lab culture Bacteria Culture media Unclassified defined medium 32.7717 -117.0735 8900162 12789 0 0 1 0 SRX8291682 Unrestricted 3352.38 Metatranscriptome 3300049083 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_6 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300049083 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 127068102 283395 202 47 597 269 Unrestricted 20.33 Metatranscriptome 3300030933 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Litter N2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030933 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ake.olson@slu.se; fmartin1954@me.com Ake Olson; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 634351290 1651562 890 357 2214 1077 SRX3345106 Unrestricted 0.0 Metatranscriptome 3300016950 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in NEPC medium with nocodazole, 20 C and 207 ?mol photons light - Asterionellopsis glacialis CCMP 134 (MMETSP0708) National Center for Genome Resources 3300016950 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 32.655 -117.14 12414144 23260 36 16 50 20 0.0 Metatranscriptome 3300002875 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 1 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002875 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 11741599 34875 111 278 1730 1343 Unrestricted 0.0 Metatranscriptome 3300034771 *Microbiome Permanent Draft Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S19 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034771 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes colin.averill@usys.ethz.ch Colin Averill No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 36.0 -78.0 99456030 214401 10 66 282 310 SRX7586123 Unrestricted 129.43 Metatranscriptome 3300010431 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS5_55_TP2_13L Marine Biological Laboratory 3300010431 Metatranscriptome Analysis CLC genomics wb7 released per JGI data release policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933 -130.014 121604 383 11 1 44 5 0.0 Metatranscriptome 3300011021 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 7 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011021 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 12977042 31433 64 126 5213 878 Unrestricted 0.0 Metatranscriptome 3300018524 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_132 - TARA_N000002422 (ERX1782099-ERR1711883) Canada's Michael Smith Genome Sciences Centre 3300018524 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 31.5168 -159.046 17790911 40520 25 18 131 298 0.0 Metatranscriptome 3300048700 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Metatranscriptome of beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - B2_CE2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048700 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.2552 -122.5085 122650521 242229 2 6 113 52 Restricted 59.04 Metatranscriptome 3300016751 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101408BT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016751 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 294278383 646499 262 288 6628 4885 SRX3780776 Unrestricted 0.0 Metatranscriptome 3300046224 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_5_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046224 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 63945950 108312 1 1 21 3 Restricted 141.65 Metatranscriptome 3300008435 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy - t0.CO.RNAseq.exp1 University of Naples 3300008435 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Cheese 25788 103 17 0 73 0 0.0 Metatranscriptome 3300031090 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031090 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 59.9979 10.7895 602461720 1327679 73 98 497 478 SRX5351814 Unrestricted 0.0 Metatranscriptome 3300009387 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from Amazon river, Brazil - RCM24 University of Georgia 3300009387 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic River Freshwater Unclassified River water 97912340 320384 319 180 2174 536 SRX864215 0.0 Metatranscriptome 3300036372 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen2, Rep 3, Chloramphenicol (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036372 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 22973517 25206 1 0 2 1 SRX8381240, SRX8381239 Unrestricted 0.0 Metatranscriptome 3300018969 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_022 - TARA_A100000539 (ERX1782234-ERR1712179) Canada's Michael Smith Genome Sciences Centre 3300018969 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.8386 17.4155 406232406 796701 94 27 275 423 0.0 Metatranscriptome 3300032417 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day12_9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032417 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 29658017 49812 9 0 50 0 SRX6857979 Unrestricted 251.96 Metatranscriptome 3300006607 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS891_Anemone_RNA 3300006607 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933231 -130.013645 3434303 12044 107 17 550 61 0.0 Metatranscriptome 3300041659 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_129 MetaT AgResearch, New Zealand, Mosgeil 3300041659 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 47954565 108688 227 81 1304 127 0.0 Metatranscriptome 3300031065 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031065 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 25035766 48372 49 15 119 116 SRX5794196 Unrestricted 17.36 Metatranscriptome 3300017323 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium, at 20 C, 35 psu salinity and 273 ?mol photons light - Eutreptiella gymnastica NIES-381 (MMETSP0039_2) National Center for Genome Resources 3300017323 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 67192029 103696 1 4 1 3 0.0 Metatranscriptome 3300053647 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T2_4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053647 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 70034404 130176 25 3 159 28 Unrestricted 0.0 Metatranscriptome 3300018952 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_064 - TARA_N000000539 (ERX1782281-ERR1712142) Canada's Michael Smith Genome Sciences Centre 3300018952 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -29.5018 37.9887 526669636 1045629 5 65 47 410 0.0 Metatranscriptome 3300026412 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepA_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026412 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 106122506 202459 50 99 168 436 SRX4797126 Unrestricted 26.88 Metatranscriptome 3300049694 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MT_150518 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049694 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 138829002 276454 7 12 269 31 Unrestricted 50.38 Metatranscriptome 3300030800 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Mineral N1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030800 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr; ake.olson@slu.se Francis M. Martin; Ake Olson No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 418566935 1127471 2804 514 5436 1186 SRX3345080 Unrestricted 0.0 Metatranscriptome 3300010015 *Microbiome Permanent Draft Black Band Disease transitions Microbial communities of stony corals with Black-band disease (BBD) from Carrie Bow Cay Field Station, Belize; BBD Transitions coral #4 sample B4 University of Maryland 3300010015 Metatranscriptome Analysis IDBA-Tran v1.1.1 released per JGI data release policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified marine 16.80288 -88.08213 98305237 215247 66 13 219 50 0.0 Metatranscriptome 3300013065 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES037 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013065 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 51203098 110831 164 95 1217 4750 SRX3010410 Unrestricted 0.0 Metatranscriptome 3300051260 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_77 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051260 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 103201207 266222 118 142 1038 895 Unrestricted 68.25 Metatranscriptome 3300031328 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031328 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 84861945 159394 56 63 56 252 SRX5794227 Unrestricted 19.25 Metatranscriptome 3300016849 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Indian Ocean in L1 medium with seawater, 24 C, 33 psu salinity and 573 ?mol photons light - Bathycoccus prasinos RCC 716 (MMETSP1460) National Center for Genome Resources 3300016849 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -14.483333 113.45 13508201 13874 9 2 16 1 0.0 Metatranscriptome 3300017248 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium, 13 C, 21 psu salinity and 311 ?mol photons light - Pseudopedinella elastica CCMP 716 (MMETSP1068) National Center for Genome Resources 3300017248 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 43.0 68.0 49752468 65058 29 8 51 25 0.0 Metatranscriptome 3300022508 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-M (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022508 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 211176336 493282 444 637 9566 4273 SRX4401559 Unrestricted 0.0 Metatranscriptome 3300030766 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T25 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030766 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 39507075 75020 75 48 103 250 SRX5352480 Unrestricted 20.23 Metatranscriptome 3300018983 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_138 - TARA_N000002997 (ERX1782408-ERR1712000) Canada's Michael Smith Genome Sciences Centre 3300018983 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine 6.3559 -103.0598 542451817 1165783 154 70 434 634 0.0 Metatranscriptome 3300008681 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - C5.FECAL.14dpc CCME-COLORADO 3300008681 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 5536247 21347 68 2 1062 14 0.0 Metatranscriptome 3300010197 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1000_T MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010197 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 128361065 334557 35 0 410 6 SRX2521481, SRX2521482 Unrestricted 0.0 Metatranscriptome 3300008580 *Microbiome Permanent Draft Microbial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean Microbial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean - CTD-11-61 University of Michigan 3300008580 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vents 5945021 25586 2540 185 11328 870 0.0 Metatranscriptome 3300049807 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Weichs, Bavaria, Germany - PB8_MT_290118 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049807 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 48.39537892 11.44760761 146307647 301197 13 11 203 21 Unrestricted 57.25 Metatranscriptome 3300005388 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1500_B MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005388 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 20627094 60351 949 3 2303 17 SRX2521672, SRX2521673 Unrestricted 0.0 Metatranscriptome 3300009346 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from the North Atlantic ocean - ACM14 University of Georgia 3300009346 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 48730475 146810 51 124 257 420 0.0 Metatranscriptome 3300017054 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Adriatic Sea in f/2 medium with sea water, 20 C, 36 psu salinity and 309 ?mol photons light - Skeletonema marinoi FE7 (MMETSP1039) National Center for Genome Resources 3300017054 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 43.5 14.5 25473307 30086 5 2 3 2 0.0 Metatranscriptome 3300019001 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_009 - TARA_X000001043 (ERX1782383-ERR1712007) Canada's Michael Smith Genome Sciences Centre 3300019001 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.0609 5.9422 489796024 1319344 125 56 493 854 0.0 Metatranscriptome 3300046134 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046134 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4161 -64.8992 62594207 153046 563 31 968 304 Unrestricted 21.95 Metatranscriptome 3300036470 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen2, Rep 2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036470 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 115444424 162145 3 0 102 0 SRX8382014 Unrestricted 93.13 Metatranscriptome 3300011039 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 20 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011039 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 24424865 60216 143 904 5680 1573 Unrestricted 0.0 Metatranscriptome 3300052766 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_73 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052766 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 182081215 452667 206 166 1294 966 Unrestricted 52.3 Metatranscriptome 3300042512 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_DW_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042512 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 49230225 66665 0 0 0 0 Unrestricted 274.67 Metatranscriptome 3300030877 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030877 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 59.9992 10.7901 46529016 108644 199 207 596 1012 SRX5351927 Unrestricted 0.0 Metatranscriptome 3300019055 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_041 - TARA_N000000073 (ERX1782414-ERR1711963) Canada's Michael Smith Genome Sciences Centre 3300019055 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 14.6059 69.9776 1174846887 2159804 75 61 398 799 0.0 Metatranscriptome 3300005413 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1500_T MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005413 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 69564144 163862 45 4 238 6 SRX2521303, SRX2521304 Unrestricted 0.0 Metatranscriptome 3300018683 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_082 - TARA_N000001394 (ERX1782475-ERR1712204) Canada's Michael Smith Genome Sciences Centre 3300018683 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -47.1966 -58.2349 96597555 271398 70 19 160 273 0.0 Metatranscriptome 3300008388 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34704 J. Craig Venter Institute (JCVI) 3300008388 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 12778 29 0 0 0 0 0.0 Metatranscriptome 3300047427 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81957cbc-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047427 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 344785808 856504 446 265 2126 1668 Unrestricted 31.21 Metatranscriptome 3300028116 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepC_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028116 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 5165638 11596 12 39 207 255 SRX5245747 Unrestricted 18.12 Metatranscriptome 3300007170 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_A4L_L (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007170 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 31354434 112131 5827 5771 16733 16006 SRX7191097 Unrestricted 0.0 Metatranscriptome 3300016773 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in K medium, 20 C, 35 psu salinity and 114 ?mol photons light - unclassified eukaryote RCC 856 (MMETSP1311) National Center for Genome Resources 3300016773 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -8.33333333 -141.25 10171336 15154 16 1 17 3 0.0 Metatranscriptome 3300005494 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1600(2)_B MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005494 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 56347721 144431 666 10 1851 37 SRX2521780, SRX2521781 Unrestricted 0.0 Metatranscriptome 3300009212 *Microbiome Permanent Draft Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample 3-1 University of Duisburg-Essen 3300009212 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Pond Freshwater Unclassified Eutrophic pond 51.46 7.0 177443159 594072 55 61 942 441 SRX505285 0.0 Metatranscriptome 3300012966 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012966 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 37.5161 -76.1223 218575569 478692 358 994 1701 8933 SRX3007434 Unrestricted 0.0 Metatranscriptome 3300042418 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_370_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042418 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 41948606 52684 0 0 9 0 Unrestricted 272.49 Metatranscriptome 3300038913 *Microbiome Permanent Draft Yosemite high-elevation lakes metatranscriptomes Freshwater microbial communities from Upper Cathedral Lake in YNP, CA, USA - Y18-262 Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300038913 Metatranscriptome Analysis megahit v. 1.2.7 released by JGI data releasing policy No Yes eperezcoronel@ucmerced.edu Elisabet Perez Coronel No Environmental Aquatic Lake Freshwater Unclassified freshwater 37.85902778 -119.61555556 54666503 92255 120 320 384 770 0.0 Metatranscriptome 3300008526 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.6.3V73.15dpc CCME-COLORADO 3300008526 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 5392241 21438 30 0 354 10 0.0 Metatranscriptome 3300018669 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_139 - TARA_N000003043 (ERX1789562-ERR1719304) Canada's Michael Smith Genome Sciences Centre 3300018669 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 6.4946 -95.0463 30827033 65944 2 12 4 83 0.0 Metatranscriptome 3300035613 *Microbiome Permanent Draft Sediment microbial communities from Lake Washington near Medina, WA, United States Metatranscriptome of methane-enriched sediment microbial communities from Lake Washington, WA, United States - HO-NA-2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035613 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment sediment 47.6215 -122.2558 110771580 187499 2 0 6 1 SRX8379871 Unrestricted 440.77 Metatranscriptome 3300020066 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT45_16_1Ra (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300020066 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9232 -106.9513 128127469 296371 57 594 3027 4536 SRX4809326 Unrestricted 0.0 Metatranscriptome 3300016811 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in MiEB12:f/2(10:1) medium, at 22 C, 2 psu salinity and 429 ?mol photons light - Compsopogon caeruleus SAG 36.94 (MMETSP0312) National Center for Genome Resources 3300016811 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 18919253 22027 16 4 20 8 0.0 Metatranscriptome 3300023539 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023539 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 49.0448 13.618 8531368 18759 62 62 1763 547 SRX5243654, SRX4455325 Unrestricted 0.0 Metatranscriptome 3300017076 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in modified f/2 medium with seawater, 3 C, 33.6 psu salinity and 119 ?mol photons light - Thalassionema nitzschioides L26-B (MMETSP0158) National Center for Genome Resources 3300017076 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -47.86667 -15.8 32337643 30860 2 1 3 1 0.0 Metatranscriptome 3300041442 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_1 MetaT AgResearch, New Zealand, Mosgeil 3300041442 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Rhizoplane Roots Dairy farm pasture -43.648506 172.343549 15376484 28783 730 779 2528 1254 0.0 Metatranscriptome 3300022708 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022708 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 147473020 354795 316 456 9327 4034 SRX4407892 Unrestricted 0.0 Metatranscriptome 3300055312 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - m1.2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055312 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 204696977 436530 2 0 21 2 Unrestricted 94.13 Metatranscriptome 3300030566 *Microbiome Permanent Draft Metatranscriptome of decayed wood fungal communities from Pinus contorta in National Forests from Montana, United States Metatranscriptome of decayed wood fungal communities from Pinus contorta in Bitterroot National Forest, Montana, United States - GP2-1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030566 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes dcullen@wisc.edu Daniel Cullen No Host-associated Plants Stem Phyllosphere Wood decay decayed wood 45.755 -113.9106 224113036 485574 37 11 65 74 SRX4804155 Unrestricted 0.0 Metatranscriptome 3300046195 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_6_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046195 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 105502995 166194 1 1 23 0 Restricted 124.47 Metatranscriptome 3300008780 *Microbiome Permanent Draft Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico - 85m_>1.6micron Georgia Institute of Technology 3300008780 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hypoxic zone Marine Unclassified Ocean water 18.9 -104.5 1066124 2154 18 18 439 375 SRX895491 0.0 Metatranscriptome 3300022141 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022141 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9266 -83.4611 54878557 111825 370 1232 11641 9119 SRX4393178 Unrestricted 0.0 Metatranscriptome 3300047342 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_3_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047342 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 78108107 118968 4 0 23 0 Restricted 206.72 Metatranscriptome 3300018652 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_098 - TARA_N000001590 (ERX1782207-ERR1711900) Canada's Michael Smith Genome Sciences Centre 3300018652 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -25.8076 -111.6906 82103879 215949 42 36 218 298 0.0 Metatranscriptome 3300006571 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006571 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 174785755 553630 3073 10000 6635 23058 SRX3196377 Unrestricted 0.0 Metatranscriptome 3300007321 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom. Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300007321 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sgtringe@lbl.gov, rmmckay@bgsu.edu Susannah Tringe, Robert M. McKay No Environmental Aquatic Lentic Freshwater Unclassified Freshwater lake 41.69957 -83.2941 283258381 701067 2437 9781 5273 19912 SRX3195589 Unrestricted 0.0 Metatranscriptome 3300030615 *Microbiome Permanent Draft Metatranscriptome of decayed wood fungal communities from Pinus contorta in National Forests from Montana, United States Metatranscriptome of plant litter fungal communities from Pinus contorta in Bitterroot National Forest, Montana, United States - GP1-LITTER (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030615 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes dcullen@wisc.edu Daniel Cullen No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 45.7544 -113.9092 616838846 1335851 76 33 220 258 SRX5250603 Unrestricted 0.0 Metatranscriptome 3300028752 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Lys1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028752 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 46778520 89977 11 8 228 43 SRX5356173 Unrestricted 67.43 Metatranscriptome 3300002664 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF137 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002664 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.53312 -72.189707 6962699 18587 155 509 345 2196 SRX2014423 Unrestricted 0.0 Metatranscriptome 3300016705 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Metatranscriptome of peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin06_30_metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016705 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 188840606 444719 139 130 6510 1583 SRX3204292 Unrestricted 0.0 Metatranscriptome 3300055299 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP4.1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055299 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 217987385 447040 35 61 297 337 Unrestricted 86.45 Metatranscriptome 3300012733 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES131 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012733 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 252504211 517279 89 162 577 3576 SRX3011162 Unrestricted 0.0 Metatranscriptome 3300052377 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_160 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052377 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 23947673 63209 58 92 407 428 Unrestricted 349.61 Metatranscriptome 3300016896 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in F/2 medium with seawater, 4nM Fe, 12.5um EDTA, 0.4uM Phosphate, 20 C, 35 psu salinity and 398 ?mol photons light - Thalassiosira rotula GSO102 (MMETSP0912) National Center for Genome Resources 3300016896 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 48.629353 -122.957542 18716527 28669 30 11 41 21 0.0 Metatranscriptome 3300032430 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day5_8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032430 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 30550739 51819 12 0 59 3 SRX6857171 Unrestricted 105.33 Metatranscriptome 3300031828 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU3 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031828 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 49.0431 13.617 53475897 78797 35 41 352 298 SRX5243237, SRX4454779 Unrestricted 0.0 Metatranscriptome 3300017118 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium w/o silicate, 13 C, 21 psu salinity and 327 ?mol photons light - Rhodosorus marinus CCMP 769 (MMETSP0011_2) National Center for Genome Resources 3300017118 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 20.5 156.8 31941552 44031 26 12 29 18 0.0 Metatranscriptome 3300017150 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in Aquil nutrients amended seawater with alpha-glycerophosphate, at 20 C, 35 psu salinity and 566 ?mol photons light - Emiliania huxleyi CCMP 370 (MMETSP1155) National Center for Genome Resources 3300017150 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 37238782 47324 3 5 5 10 0.0 Metatranscriptome 3300023686 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023686 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 49.0427 13.6161 27676327 40972 28 22 367 265 SRX4454814 Unrestricted 22.86 Metatranscriptome 3300004470 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 59 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004470 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 122945593 351105 6719 2475 25661 5469 Unrestricted 0.0 Metatranscriptome 3300031135 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031135 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 47885765 90262 51 28 81 214 SRX5352191 Unrestricted 18.62 Metatranscriptome 3300037654 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_N3_C1_D4_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037654 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 42467357 88468 430 256 5598 757 SRX9385618 Unrestricted 232.42 Metatranscriptome 3300010189 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_2000_T MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010189 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 98657943 241417 78 3 499 8 SRX2521357, SRX2521358 Unrestricted 0.0 Metatranscriptome 3300046646 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - S2-R1-B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046646 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3571 19.051 132058608 295785 159 155 503 604 Unrestricted 55.63 Metatranscriptome 3300048955 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 37 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048955 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 42.4295 -81.2044 2455951 5315 5 4 39 30 Restricted 326.58 Metatranscriptome 3300008285 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34717 J. Craig Venter Institute (JCVI) 3300008285 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 16125 31 0 0 0 0 0.0 Metatranscriptome 3300034670 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034670 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 259146587 610256 277 1117 4586 5391 SRX7520337 Unrestricted 21.43 Metatranscriptome 3300051590 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 24_50_13 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051590 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 162284959 423797 454 388 3552 2232 Unrestricted 43.14 Metatranscriptome 3300031113 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean transect - DeepDOM_S7_Trap_metaT (Eukaryote Community Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300031113 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -22.5 -33.0 685763743 1407766 6 32 543 354 SRX2754461 Unrestricted 0.0 Metatranscriptome 3300035370 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Metatranscriptome of Bradyrhizobium sp. W and Methylocaldum sp. 0917 mixed culture communities from SDSU, California, USA - Exp#3 BR2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035370 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Engineered Lab culture Bacteria Culture media Unclassified defined medium 32.7717 -117.0735 20196890 25839 2 0 14 0 SRX8294558 Unrestricted 596.48 Metatranscriptome 3300052402 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 0_100_8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052402 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 34770642 85127 520 469 3796 2989 Unrestricted 127.54 Metatranscriptome 3300018724 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_124 - TARA_N000002036 (ERX1789589-ERR1719194) Canada's Michael Smith Genome Sciences Centre 3300018724 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -9.1504 -140.5216 115490593 316338 38 28 79 341 0.0 Metatranscriptome 3300032464 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032464 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Unclassified Phyllosphere Unclassified phyllosphere 42.39 -85.37 150288574 257953 65 72 111 482 SRX7077672 Unrestricted 66.55 Metatranscriptome 3300028078 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepB_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028078 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 102183343 192673 49 118 163 524 SRX5245681 Unrestricted 25.37 Metatranscriptome 3300012715 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES122 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012715 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 149063957 302813 59 126 569 3124 SRX3011051 Unrestricted 0.0 Metatranscriptome 3300010985 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-7 (Eukaryote Community Metatranscriptome) (version 8) (version 5) DOE Joint Genome Institute (JGI) 3300010985 Metatranscriptome Analysis MEGAHIT v. 1.0.4b No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 18.7998 -20.70285 996879969 2240858 705 1179 1058 2552 SRX5724273 Unrestricted 0.0 Metatranscriptome 3300048601 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_1_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048601 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 49220148 76800 1 1 14 1 Restricted 178.54 Metatranscriptome 3300030633 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Anb12 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030633 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 492431011 1066551 133 168 2320 686 SRX4546944 Unrestricted 0.0 Metatranscriptome 3300003149 *Microbiome Permanent Draft Marine microbial communities of a harmful algal bloom from Baltimore Inner Harbor Marine microbial communities from Baltimore Inner Harbor, Chesapeake Bay - harmful algal bloom University of Maryland 3300003149 Metatranscriptome Analysis Trinity 2012-06-08 Made public because these are downloaded from Genbank No Yes delwiche@umd.edu Delwiche,C.F No Environmental Aquatic Intertidal zone Marine Estuary Marine 39.283 -76.611 129385519 189346 16 15 41 61 0.0 Metatranscriptome 3300006394 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006394 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 240686932 648214 1683 7974 4228 20378 SRX3196212 Unrestricted 0.0 Metatranscriptome 3300036154 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp01_R12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036154 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 65909763 149884 412 113 863 1947 SRX8835168 Unrestricted 50.89 Metatranscriptome 3300018496 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_135 - TARA_N000002193 (ERX1782219-ERR1712143) Canada's Michael Smith Genome Sciences Centre 3300018496 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 33.02 -121.7406 5412536 13594 0 1 5 27 0.0 Metatranscriptome 3300009862 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 4, 3m depth; RNA IDBA-UD Marine Biological Laboratory 3300009862 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 8.34 12964403 32612 315 395 1508 719 0.0 Metatranscriptome 3300013050 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - RNA 3rd pass 37_C BE-Lig MG (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013050 Metatranscriptome Analysis megahit v. 1.0.6 No Yes jmgladden@lbl.gov John Gladden No Environmental, Engineered Terrestrial, Solid waste Composting Soil, Mixed feedstock Commercial compost compost 37.83 -122.29 34432248 59337 14 37 329 2173 SRX3901970 Unrestricted 0.0 Metatranscriptome 3300017013 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Sea in modified f/2 medium with seawater, 10nmol/L H2SeO3, no copper and silicate, 25 C, 15 psu salinity and 602 ?mol photons light - Skeletonema marinoi SM1012Den-03 (MMETSP0320) National Center for Genome Resources 3300017013 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 55.5837 12.412 35259477 35494 7 6 9 10 0.0 Metatranscriptome 3300051255 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Schonbrunner Wald, Bavaria, Germany - BW_CO_033R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051255 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.906539 13.558004 82123300 211538 240 233 1066 926 Unrestricted 75.41 Metatranscriptome 3300018823 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_128 - TARA_N000002285 (ERX1789533-ERR1719243) Canada's Michael Smith Genome Sciences Centre 3300018823 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine 0.0003 -153.6759 177395791 446226 3 22 21 165 0.0 Metatranscriptome 3300022361 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.378 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022361 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.313 -123.997 16463678 33747 153 635 3182 2086 SRX4016154 Unrestricted 0.0 Metatranscriptome 3300017094 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in marine media K with soil extract, 18 C, 35 psu salinity and 465 ?mol photons light - Ochromonas sp. CCMP1393 (MMETSP0004_2) National Center for Genome Resources 3300017094 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 38.702 -72.3667 27931199 31704 12 2 6 2 0.0 Metatranscriptome 3300010068 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_8_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010068 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 22878540 47849 25 261 1612 2657 Unrestricted 0.0 Metatranscriptome 3300027078 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0765-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300027078 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 188321684 320338 60 6 22 64 SRX5255082 Unrestricted 36.68 Metatranscriptome 3300009859 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 4, Depth 8m; RNA IDBA-UD Marine Biological Laboratory 3300009859 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 6.56 7718747 17965 685 56 3408 195 0.0 Metatranscriptome 3300041702 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_480 MetaT AgResearch, New Zealand, Mosgeil 3300041702 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 6634644 13703 122 89 943 164 0.0 Metatranscriptome 3300012706 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES159 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012706 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 127286354 265197 217 276 2401 4061 SRX3527330 Unrestricted 0.0 Metatranscriptome 3300047601 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_7_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047601 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 78337452 132156 9 3 43 5 Restricted 182.13 Metatranscriptome 3300004639 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI048_120m_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004639 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 102233838 281844 2579 467 7119 1650 Unrestricted 0.0 Metatranscriptome 3300002336 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI - F_92min_Anaerobic no depletion (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002336 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes tmcmahon@cae.wisc.edu, tmcmahon@engr.wisc.edu; tmcmahon@cae.wisc.edu Sludge Phage users, Katherine McMahon; Trina McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.078418 -89.386482 754197 2523 21 19 141 117 SRX2554562 Unrestricted 0.0 Metatranscriptome 3300011277 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S14 170_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011277 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 15631998 36120 2 8 226 300 SRX3787151 Unrestricted 0.0 Metatranscriptome 3300031881 *Microbiome Permanent Draft Microbial communities from the deep biosphere Metatranscriptome of alkaline spring water microbial communities from Santa Elena Complex in Costa Rica - Spring9 re-assembly The Marine Biological Laboratory 3300031881 Metatranscriptome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Alkaline Non-marine Saline and Alkaline Unclassified water 10.8939 -85.7273 122900069 606732 169 23 306 46 SRX2065077 0.0 Metatranscriptome 3300026565 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepC_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026565 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 231323903 459228 76 213 743 1461 SRX4797130 Unrestricted 26.86 Metatranscriptome 3300016716 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Gulf of Thailand in Prov 50 medium, 20 C, 21 psu salinity and 208 ?mol photons light - Bolidomonas pacifica CCMP 1866 (MMETSP0785) National Center for Genome Resources 3300016716 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 5.5 105.0 23983672 25097 16 1 24 1 0.0 Metatranscriptome 3300003156 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Avena fatua rhizosphere microbial communities - H2_Bulk_Litter_11 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003156 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes mkfstone@berkeley.edu, nuccio1@llnl.gov; mkfstone@berkeley.edu Mary Firestone, Erin Nuccio; Mary Firestone No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.97364 -123.117453 472429 934 7 7 12 98 SRX2558062 Unrestricted 0.0 Metatranscriptome 3300018992 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_146 - TARA_N000003240 (ERX1789485-ERR1719233) Canada's Michael Smith Genome Sciences Centre 3300018992 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 34.7631 -71.2422 631530741 1239915 5 73 10 279 0.0 Metatranscriptome 3300059625 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 151R_CD_T3_R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059625 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 104162151 262857 292 262 1508 1634 Unrestricted 55.45 Metatranscriptome 3300021905 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-2S (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021905 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 105044623 210727 46 53 95 234 SRX5203083 Unrestricted 0.0 Metatranscriptome 3300031018 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031018 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 59.9989 10.7903 82339077 207010 92 151 527 727 SRX5351832 Unrestricted 0.0 Metatranscriptome 3300046101 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-124 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046101 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4479 -64.2031 94782647 225935 840 47 1484 552 Unrestricted 17.65 Metatranscriptome 3300031050 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Humus N3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031050 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ake.olson@slu.se; francis.martin@inrae.fr Ake Olson; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 499767141 1327231 2417 382 5145 964 SRX3345042 Unrestricted 0.0 Metatranscriptome 3300017202 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 15 C, 32 psu salinity and 236 ?mol photons light - Prymnesium polylepis CCMP 1757 (MMETSP0147) National Center for Genome Resources 3300017202 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 35441514 54544 1 3 2 4 0.0 Metatranscriptome 3300018509 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_100 - TARA_N000001642 (ERX1782430-ERR1711958) Canada's Michael Smith Genome Sciences Centre 3300018509 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -12.9794 -96.0232 3763974 10375 3 4 26 62 0.0 Metatranscriptome 3300017035 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in seawater with wheat grains, 20 C, 35 psu salinity and 122 ?mol photons light - Paramoeba atlantica 621/1 / CCAP 1560/9 (MMETSP0151_2) National Center for Genome Resources 3300017035 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 29.60806 -28.98667 25939973 37715 21 5 25 18 0.0 Metatranscriptome 3300008839 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_2006 Massachusetts Institute of Technology 3300008839 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 1866780 5884 7 6 233 573 0.0 Metatranscriptome 3300006376 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Total_1013_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006376 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 148042387 414567 303 345 1266 810 SRX2752331 Unrestricted 0.0 Metatranscriptome 3300049092 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Metatranscriptome of beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - B3_CE2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049092 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.2552 -122.5085 25508756 51752 1 4 31 36 Restricted 44.88 Metatranscriptome 3300009741 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from Louisiana Shelf, Gulf of Mexico - GoM_2015_C6C_193_2m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009741 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 28.8679 -90.4764 82132957 152599 198 1438 839 10263 Unrestricted 0.0 Metatranscriptome 3300007526 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaT_CSR_2012 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007526 Metatranscriptome Analysis megahit v. 0.2.0 No Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment watersheds 41.1289 -78.4195 196374778 700596 10017 10222 37097 20203 SRX5724286 Unrestricted 0.0 Metatranscriptome 3300019247 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA - AD_UKC028_MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019247 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 40.3 -88.15 226523847 494116 107 367 8059 4506 SRX3903285 Unrestricted 0.0 Metatranscriptome 3300016791 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041412BS metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016791 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 657061560 1339562 8 4 321 185 SRX3781479 Unrestricted 0.0 Metatranscriptome 3300030968 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB6 EcM (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030968 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7585 6.3578 531155783 1509907 9692 2031 19110 5477 SRX3346472 Unrestricted 0.0 Metatranscriptome 3300019164 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Soil microbial communities from Bohemian Forest, Czech Republic - CSI3 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019164 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 49.0431 13.617 16640373 36487 6 125 314 931 SRX3937175 Unrestricted 0.0 Metatranscriptome 3300052742 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_17 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052742 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 175135304 465714 219 202 1595 1097 Unrestricted 49.3 Metatranscriptome 3300021337 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.425 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021337 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.286 -124.052 346633718 880680 437 1309 7363 5529 SRX4016325 Unrestricted 0.0 Metatranscriptome 3300041987 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Metatranscriptome of feshwater microbial communities from Maryland, USA - muddycreek_2019_sw_WHONDRS-S19S_0082 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300041987 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 38.8749 -76.5464 168315970 368048 338 376 2717 2095 SRX14870711 Unrestricted 34.5 Metatranscriptome 3300005628 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling - Hofmockel_1000076-3 ISU MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005628 Metatranscriptome Analysis megahit v. 0.2.0 No Yes khof@iastate.edu, kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Agricultural land Soil Unclassified Enriched soil aggregate 42.0266187 -93.6486594 20712652 56261 113 50 577 99 SRX3195389 Unrestricted 0.0 Metatranscriptome 3300046209 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_2_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046209 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 31846909 55382 1 0 13 0 Restricted 103.62 Metatranscriptome 3300044942 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P34SSC2_190917_f (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300044942 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 194726398 478992 182 342 2164 1883 SRX20650989 Unrestricted 103.88 Metatranscriptome 3300004547 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 128_HOW14 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004547 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 40508944 91972 238 12 1057 23 SRX2780253 Unrestricted 0.0 Metatranscriptome 3300018845 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_081 - TARA_N000001426 (ERX1809760-ERR1740122) Canada's Michael Smith Genome Sciences Centre 3300018845 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -44.5582 -52.2718 278400020 500697 15 25 30 256 0.0 Metatranscriptome 3300008321 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - F1.FECAL.14dpc CCME-COLORADO 3300008321 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 2508552 10193 49 0 770 11 0.0 Metatranscriptome 3300008928 *Microbiome Permanent Draft Eukaryotic communities from seawater of the North Pacific Subtropical Gyre Eukaryotic communities from seawater of the North Pacific Subtropical Gyre - HoeDylan_E3 Woods Hole Oceanographic Institution 3300008928 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ocean water 22.75 -158.0 467277043 1883616 122 92 900 984 0.0 Metatranscriptome 3300057246 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T4_1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300057246 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 83985063 131515 27 9 262 51 Unrestricted 0.0 Metatranscriptome 3300056991 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Frasne, France - Sphagnum fallax 12OTC_SF_FR (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056991 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 249895448 522373 182 101 470 490 Unrestricted 46.08 Metatranscriptome 3300051605 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 72_50_13 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051605 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 140421172 357387 450 385 2721 1972 Unrestricted 64.95 Metatranscriptome 3300004586 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 3_LOW4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004586 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 39926473 114446 5348 91 13071 253 SRX2779751 Unrestricted 0.0 Metatranscriptome 3300019130 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_137 - TARA_N000002942 (ERX1782241-ERR1712112) Canada's Michael Smith Genome Sciences Centre 3300019130 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 14.2005 -116.7031 226604642 482629 2 18 5 133 0.0 Metatranscriptome 3300059643 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 13R_AD_T1_R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059643 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 369812687 908015 369 250 1505 1652 Unrestricted 49.02 Metatranscriptome 3300016990 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in enriched f/2 medium with seawater, 23 C, 34 psu salinity and 120 ?mol photons light - Cyclophora tenuis ECT3854 (MMETSP0397) National Center for Genome Resources 3300016990 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 21.514 -157.8362 17159905 25106 96 10 170 20 0.0 Metatranscriptome 3300006593 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Gly_02_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006593 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 132421704 346481 297 252 1186 648 SRX3362013 Unrestricted 0.0 Metatranscriptome 3300048695 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Metatranscriptome of beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - B1_CE3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048695 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.2552 -122.5085 63785688 129910 7 4 301 35 Restricted 89.74 Metatranscriptome 3300030542 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO132-ANR003SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030542 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2662 -71.2166 201481919 463677 40 72 903 968 SRX4010651 Unrestricted 0.0 Metatranscriptome 3300011311 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S23 DCM_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011311 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 74979884 168550 113 80 1276 2404 SRX2524445 Unrestricted 0.0 Metatranscriptome 3300016874 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in enriched f/2 medium with seawater, 10.6uM sodium metasilicate, 16 C, 35 psu salinity and 441 ?mol photons light - Pseudo-nitzschia fraudulenta WWA7 (MMETSP0853) National Center for Genome Resources 3300016874 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 34.0847 -119.05 22748722 27069 60 1 103 1 0.0 Metatranscriptome 3300028105 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepA_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028105 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 189489166 397728 90 92 346 619 SRX5245633 Unrestricted 24.61 Metatranscriptome 3300021858 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2015 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021858 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment sediment 41.1752 -78.4168 269680232 659458 506 1275 22293 10179 SRX4010312 Unrestricted 0.0 Metatranscriptome 3300019286 *Microbiome Permanent Draft Biogas reactor microbial communities Biogas reactor microbial communities from As, Norway - D1BOC_PacBio Genomics Core Facility (Oslo University Hospital and University of Oslo) 3300019286 Metatranscriptome Analysis Trinity released by JGI data releasing policy No Yes phillip.b.pope@gmail.com Phil B. Pope No Engineered Bioreactor Biogas Anaerobic Unclassified Biogas reactor 59.6 10.8 75859744 86229 30 0 2 1 0.0 Metatranscriptome 3300003712 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_85LU_5_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003712 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 6690705 13836 202 744 479 1583 SRX2568597 Unrestricted 0.0 Metatranscriptome 3300016965 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in Aquil nutrients amended seawater, 20nM total Fe, at 20 C, 35 psu salinity and 542 ?mol photons light - Thalassiosira weissflogii CCMP 1336 (MMETSP0878) National Center for Genome Resources 3300016965 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 33328777 32950 16 2 22 8 0.0 Metatranscriptome 3300005497 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1500(2)_T MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005497 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 53967164 148903 32 0 92 3 SRX2521521 Unrestricted 0.0 Metatranscriptome 3300022716 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022716 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 240319727 579861 246 667 5607 4603 SRX4408475 Unrestricted 0.0 Metatranscriptome 3300003161 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Avena fatua rhizosphere microbial communities - H2_Rhizo_Litter_8 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003161 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes mkfstone@berkeley.edu, nuccio1@llnl.gov; mkfstone@berkeley.edu Mary Firestone, Erin Nuccio; Mary Firestone No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.97364 -123.117453 14778775 32576 137 178 737 1351 SRX2558065 Unrestricted 0.0 Metatranscriptome 3300018848 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_084 - TARA_N000001442 (ERX1789421-ERR1719148) Canada's Michael Smith Genome Sciences Centre 3300018848 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -60.3046 -60.5715 206071742 505009 17 25 37 196 0.0 Metatranscriptome 3300030990 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030990 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92045766 -106.94845279 284084710 666252 550 429 2939 2100 SRX8377213 Unrestricted 21.32 Metatranscriptome 3300047424 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 819579ce-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047424 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 188269025 468674 394 255 1593 1463 Unrestricted 40.32 Metatranscriptome 3300019153 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_085 - TARA_N000001019 (ERX1789708-ERR1719469) Canada's Michael Smith Genome Sciences Centre 3300019153 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -62.2024 -49.2382 596321875 1394771 53 23 103 299 0.0 Metatranscriptome 3300008925 *Microbiome Permanent Draft Microbial communities from freshwater in the western basin of Lake Erie, USA Microbial communities from freshwater in the western basin of Lake Erie, USA - 973-1 University of Tennessee 3300008925 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.79 -83.33 5809048 11458 27 31 249 318 0.0 Metatranscriptome 3300009909 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 6, 3m depth; RNA IDBA-UD Marine Biological Laboratory 3300009909 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 8.12 11702638 32966 403 142 1091 436 0.0 Metatranscriptome 3300031685 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_L6_32mM_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031685 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 20584120 32235 0 0 1 3 SRX5783511 Unrestricted 36.32 Metatranscriptome 3300030874 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030874 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 59.9992 10.7901 49361788 114413 79 104 326 503 SRX5351392 Unrestricted 0.0 Metatranscriptome 3300059476 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of lake water microbial communities from Sandhills, Nebraska, United States - NSL_Bean_2020 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059476 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.7748 -102.5295 71207033 172929 7 18 188 85 Unrestricted 85.17 Metatranscriptome 3300009592 *Microbiome Permanent Draft Marine eukaryotic communities from various locations to study complex ecological interactions Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_20Mar14_M1_3um Metatranscriptome (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009592 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes azworden@mbari.org; twoyke@lbl.gov Alexandra Worden; Tanja Woyke No Environmental Aquatic Oceanic Marine Unclassified Marine 36.746 -122.0257 556448628 1006063 335 70 1630 503 SRX7203896 Unrestricted 0.0 Metatranscriptome 3300049536 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_A_3_drought (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049536 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 139705958 342851 283 140 1538 974 Unrestricted 85.12 Metatranscriptome 3300030965 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_S8_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030965 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -17.0 -29.0 91279702 355812 264 192 459 677 SRX3195626 Unrestricted 0.0 Metatranscriptome 3300017302 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in 21 psu salinity and 373 ?mol photons light - Thalassiosira punctigera Tpunct2005C2 (MMETSP1067) National Center for Genome Resources 3300017302 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 47.6901 -122.40041 41382367 54095 11 7 20 13 0.0 Metatranscriptome 3300046137 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-152 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046137 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4647 -64.2235 95409196 227806 728 38 1360 519 Unrestricted 20.79 Metatranscriptome 3300012691 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES070 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012691 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.041 -89.686 70932880 141888 76 78 3048 3092 SRX3010863 Unrestricted 0.0 Metatranscriptome 3300048698 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Metatranscriptome of beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - B1_RE3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048698 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Rectum rectum 49.2552 -122.5085 31107889 66210 3 1 63 9 Restricted 85.93 Metatranscriptome 3300019182 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZE1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019182 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 49.043 13.6183 21895234 49019 13 126 563 816 SRX3937287 Unrestricted 0.0 Metatranscriptome 3300028108 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepB_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028108 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 274747132 548669 25 133 368 989 SRX5245492 Unrestricted 20.62 Metatranscriptome 3300021855 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Metatranscriptome of freshwater sediment microbial communities from pre-fracked creek in Pennsylvania, United States - G-2016_18 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021855 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment sediment 41.4517 -76.3954 185844458 453495 843 1618 39677 15066 SRX4010386 Unrestricted 0.0 Metatranscriptome 3300036228 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp02_T0 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036228 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 115018146 260390 1107 133 2001 1391 SRX8843318 Unrestricted 35.98 Metatranscriptome 3300030791 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030791 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7416 -117.7042 29785616 57061 54 29 114 162 SRX5794190 Unrestricted 19.28 Metatranscriptome 3300016968 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Gulf of Mexico in GSe medium with ammonium, 22 C, 32 psu salinity and 197 ?mol photons light - Aureoumbra lagunensis CCMP 1510 (MMETSP0892) National Center for Genome Resources 3300016968 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Estuary marine 27.4708 -97.32 18491580 24358 6 6 2 8 0.0 Metatranscriptome 3300046416 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_24N_Fire (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046416 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1793 -81.3604 173165703 384324 27 87 1175 479 Unrestricted 33.17 Metatranscriptome 3300011296 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S17 250_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011296 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 49645941 118260 17 32 1869 1297 SRX3787214 Unrestricted 0.0 Metatranscriptome 3300051608 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 72_100_14 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051608 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 79072549 212098 277 304 2273 1862 Unrestricted 74.88 Metatranscriptome 3300046014 *Microbiome Permanent Draft Acid mine drainage microbial communities from coal mines in Pennsylvania and Ohio, United States Metatranscriptome of lab enriched acid mine drainage microbial communities from Akron, Ohio, USA - WFPL1_14D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046014 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes shagun2260@gmail.com Shagun sharma No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage acid mine drainage 41.0775 -81.5114 9563762 19259 99 261 801 1444 Unrestricted 479.41 Metatranscriptome 3300034397 *Microbiome Permanent Draft Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S59 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034397 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes colin.averill@usys.ethz.ch Colin Averill No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 36.0 -78.0 19626752 40134 8 38 200 167 SRX7586096 Unrestricted 407.45 Metatranscriptome 3300034276 *Microbiome Permanent Draft FORHOT Natural soil warming experiment in Iceland Soil microbial communities from grassland in Hveragerdi, Iceland - GN2-A University of Vienna 3300034276 Metatranscriptome Analysis rnaSPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes craig.herbold@microbial-ecology.net Craig Herbold No Environmental Terrestrial Unclassified Soil Grasslands Soil 64.025 -21.205 1957014687 8559919 660903 29578 2678539 66896 0.0 Metatranscriptome 3300046240 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_2_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046240 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 53133338 85210 6 43 103 257 Restricted 305.77 Metatranscriptome 3300003546 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - QV1.1_MAR13 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003546 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 4752013 9762 1 0 25 2 SRX3330963 Unrestricted 0.0 Metatranscriptome 3300010090 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_24_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010090 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 52678502 122764 151 649 16585 5696 Unrestricted 0.0 Metatranscriptome 3300030716 *Microbiome Permanent Draft Soil microbial communities from Risofladan, Vaasa, Finland Metatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - OX-2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030716 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes eva.hogfors-ronnholm@novia.fi Eva Hogfors-Ronnholm Yes Environmental Terrestrial Coastal area Soil Acid sulfate soil soil 63.0472 21.7116 52471223 113411 222 149 1251 743 SRX5356291 Unrestricted 52.91 Metatranscriptome 3300007000 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1700(2)_T MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300007000 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 134837899 387813 523 5 1345 12 SRX5628621 Unrestricted 0.0 Metatranscriptome 3300018540 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS670_3p0 J. Craig Venter Institute (JCVI) 3300018540 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 65.73045 22.445047 634892 2934 1 1 104 128 0.0 Metatranscriptome 3300018641 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_022 - TARA_A100000539 (ERX1782156-ERR1711909) Canada's Michael Smith Genome Sciences Centre 3300018641 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.8386 17.4155 100515467 197494 19 13 107 192 0.0 Metatranscriptome 3300052374 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_156 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052374 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 110553998 291424 253 165 1561 1139 Unrestricted 117.58 Metatranscriptome 3300051258 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 168_100_16 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051258 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 39560723 105123 176 200 1124 1162 Unrestricted 132.25 Metatranscriptome 3300014759 *Microbiome Permanent Draft Microbial communities from methanogenic microcosms from oil petroleum samples laboratory microbial enrichments from Reconcavo Basin petroleum reservoir, Newcastle Upon Tyne, UK, - cDNA 2 UNIVERSIDADE DE SAO PAULO 3300014759 Metatranscriptome Analysis METASPADES k=79 No Yes inatalia.sierra@gmail.com Isabel Natalia Sierra Garcia No Engineered Lab enrichment Anaerobic media Defined media Unclassified Laboratory microcosms 54.97825278 -1.61778056 26792985 61333 54 0 76 3 0.0 Metatranscriptome 3300050686 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae culture inoculated with mixed bacterial community from LLNL, Livermore, California, USA - f7_d2_F_S14 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050686 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 33004722 58457 3 0 7 5 Restricted 444.91 Metatranscriptome 3300002667 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF141 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002667 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.53312 -72.189707 7831041 21789 169 580 785 2614 SRX2014429 Unrestricted 0.0 Metatranscriptome 3300010065 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_0_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010065 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 24330384 54186 86 479 14610 5178 Unrestricted 0.0 Metatranscriptome 3300031033 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T32 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031033 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 31291376 61548 72 32 99 231 SRX5794803 Unrestricted 21.11 Metatranscriptome 3300026462 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 17R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026462 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 186554673 388666 226 35 277 463 SRX4783590 Unrestricted 22.84 Metatranscriptome 3300059628 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 160R_AD_T3_R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059628 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 118797339 299766 286 210 1084 1227 Unrestricted 88.91 Metatranscriptome 3300036157 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5NB15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036157 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 37853946 75132 347 1491 2999 5154 SRX8379428 Unrestricted 32.51 Metatranscriptome 3300021908 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S11 C1 B13 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021908 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 40.529594 -13.190131 120439113 223235 81 60 145 206 SRX5204104 Unrestricted 0.0 Metatranscriptome 3300006397 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006397 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 237403518 704326 3921 14116 10567 36912 SRX3195872 Unrestricted 0.0 Metatranscriptome 3300031015 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A9_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300031015 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate/submediterranean forest 42.0 1.0 352074517 804496 255 131 6832 1406 SRX2998740 Unrestricted 0.0 Metatranscriptome 3300006276 *Microbiome Permanent Draft Prairie soil microbial communities from Kansas, USA, after rainfall Prairie soil microbial communities from Kansas, USA, after rainfall - K10 Oregon State University 3300006276 Metatranscriptome Analysis VELVET 1.2.10, combine 23, 27, 31 released per JGI data release policy No Yes lzeglin@ksu.edu Lydia Zeglin No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.1038 -96.6133 1466335 8409 10 8 25 12 0.0 Metatranscriptome 3300017106 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of hypersaline lake eukaryotic communities from Great Salt Lake, Utah in f/4 medium with seawater, 29 C, 0 psu salinity and 272 ?mol photons light - Tetraselmis sv. GSL018 GSL1 (MMETSP0419_2) Colorado School of Mines 3300017106 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline lake 41.0 -112.0 34927911 43579 17 20 26 35 0.0 Metatranscriptome 3300035443 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Antarctic Ocean - DFB2_15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035443 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified Seawater -46.5954 142.0314 456800237 929123 899 91 1806 1759 SRX8226842 Unrestricted 20.25 Metatranscriptome 3300010921 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS4_55_TP1_12L Marine Biological Laboratory 3300010921 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 3886819 7633 137 5 431 7 0.0 Metatranscriptome 3300021237 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from nest from French Guiana -FG16_15_2 mRNA SA University of Luxembourg 3300021237 Metatranscriptome Analysis CLC Genomics Workbench Version 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 5.52083333 -53.13555556 65603471 230265 0 0 3 3 0.0 Metatranscriptome 3300017038 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in K medium, 20 C, 35 psu salinity and 320 ?mol photons light - Partenskyella glossopodia RCC 365 (MMETSP1318) National Center for Genome Resources 3300017038 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.4 15.61666667 24893156 29274 5 2 2 2 0.0 Metatranscriptome 3300032467 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_31MAY2016_LR2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032467 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Unclassified Phyllosphere Unclassified phyllosphere 42.39 -85.37 196642470 353147 42 48 64 272 SRX7077615 Unrestricted 112.54 Metatranscriptome 3300046309 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_5_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046309 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 51170830 88707 1 1 14 0 Restricted 109.6 Metatranscriptome 3300018727 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_004 - TARA_X000000357 (ERX1782136-ERR1711928) Canada's Michael Smith Genome Sciences Centre 3300018727 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 36.5533 -6.5669 156553579 329688 4 22 15 125 0.0 Metatranscriptome 3300018919 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_139 - TARA_N000003043 (ERX1789401-ERR1719342) Canada's Michael Smith Genome Sciences Centre 3300018919 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 6.4946 -95.0463 397054267 755955 8 42 22 209 0.0 Metatranscriptome 3300003252 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment ColumnT-5K5-90 454 Life Sciences 3300003252 Metatranscriptome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.342219 40.479289 6-8 0 0 0 0 0 0 0.0 Metatranscriptome 3300026568 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026568 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 237827920 475533 53 187 589 1381 SRX4797128 Unrestricted 21.53 Metatranscriptome 3300032521 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red3_22May_deep (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032521 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 1410042781 2497961 19 7 54 212 SRX6410050 Unrestricted 17.96 Metatranscriptome 3300009312 *Microbiome Permanent Draft Microbial communities of freshwater from Kranji Reservoir, Singapore Microbial communities of freshwater from Kranji Reservoir, Singapore - Krb1-5pm Massachusetts Institute of Technology 3300009312 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater reservoir 1.4371666 103.7186571 6509523 22682 16 4 703 123 SRX472173 0.0 Metatranscriptome 3300003562 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA Grassland soil microbial communities from Hopland, California, USA - Sample H4_Bulk_47 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003562 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes pettridge2@llnl.gov, pettridge2@llnl.gov; nuccio1@llnl.gov Jennifer Pett-Ridge, Jennifer Pett-Ridge; Erin Nuccio No Environmental Terrestrial Grasslands Soil Bulk soil Avena fatua rhizosphere 38.972988 -123.116539 25453196 76380 125 181 1188 1390 SRX2564900 Unrestricted 0.0 Metatranscriptome 3300031006 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E7_Q_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031006 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 212400295 715703 578 365 1046 1054 SRX3195627, SRX3341707 Unrestricted 0.0 Metatranscriptome 3300036189 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp03_R67 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036189 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 112320624 233048 261 93 578 1213 SRX8839915 Unrestricted 23.38 Metatranscriptome 3300017115 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Great South Bay, New York in GSe medium with ammonium, 22 C, 32 psu salinity and 362 ?mol photons light - Aureococcus anophagefferens CCMP 1850 (MMETSP0916) National Center for Genome Resources 3300017115 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Estuary marine 40.6508 -73.1524 21496018 32500 2 2 6 2 0.0 Metatranscriptome 3300029285 *Microbiome Permanent Draft Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Sorghum rhizosphere microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B3.stno.R1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300029285 Metatranscriptome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes colemanderr@gmail.com Devin Coleman-Derr No Host-associated Plants Rhizosphere Roots Unclassified sorghum rhizosphere 36.3390586 -120.12031 49904772 105477 600 1887 3500 5406 0.0 Metatranscriptome 3300011274 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S15 250m_B metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011274 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 2672901 6890 5 6 1770 226 SRX3787148 Unrestricted 0.0 Metatranscriptome 3300002653 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF135 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002653 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.53312 -72.189707 6121968 16185 154 464 432 2159 SRX2014431 Unrestricted 0.0 Metatranscriptome 3300031138 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_D6_0mM_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031138 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 15824575 25279 3 0 2 5 SRX6408409 Unrestricted 75.36 Metatranscriptome 3300003100 *Microbiome Permanent Draft Food fungal community from Canadian Camembert cheese Food fungal community from Canadian Camembert cheese Laval University 3300003100 Metatranscriptome Analysis Newbler v. 2.5.3 Made public because these are downloaded from Genbank No Yes steve.labrie@fsaa.ulaval.ca Labrie,S Yes 24670012 Engineered Food production Fermented dairy products Dairy products Cheese Food 7816685 9521 2 5 2 2 0.0 Metatranscriptome 3300003559 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA Grassland soil microbial communities from Hopland, California, USA - Sample H4_Rhizo_43 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003559 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes pettridge2@llnl.gov, nuccio1@llnl.gov; pettridge2@llnl.gov Jennifer Pett-Ridge, Erin Nuccio; Jennifer Pett-Ridge No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.972988 -123.116539 24052023 71478 94 61 217 710 SRX2563666 Unrestricted 0.0 Metatranscriptome 3300021298 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.460 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021298 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.313 -123.997 106488332 252826 164 660 1414 4066 SRX4016655 Unrestricted 0.0 Metatranscriptome 3300017097 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 18 C, 32 psu salinity and 619 ?mol photons light - Heterosigma akashiwo CCMP 2393 (MMETSP0296) National Center for Genome Resources 3300017097 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 25455413 42961 19 7 36 0 0.0 Metatranscriptome 3300010872 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 3A (Eukaryote Community Metatranscriptome) (version 5) (version 5) DOE Joint Genome Institute (JGI) 3300010872 Metatranscriptome Analysis MEGAHIT v. 1.0.4b No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 565112009 1387101 6601 834 17290 1886 SRX2752796 Unrestricted 0.0 Metatranscriptome 3300036544 *Microbiome Permanent Draft Rumen fluid microbial communities from dairy cows in UC Davis, California, USA Metatranscriptome of rumen fluid microbial communities from dairy cow in UC Davis, California, USA - UCD_Rumen_Seaweed_2497 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300036544 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bmroque@ucdavis.edu Breanna Roque No Host-associated Mammals Stomach Digestive system Rumen fluid rumen fluid 38.5368 -121.7595 71919133 135596 1 23 109 118 Unrestricted 0.0 Metatranscriptome 3300048711 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-210 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048711 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4604 -64.2162 60028606 139521 472 30 894 796 Unrestricted 20.71 Metatranscriptome 3300016708 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Indian Ocean in artificial seawater with 0.125% Artemia detritus and 0.8% agar, 23 C, 25 psu salinity and 290 ?mol photons light - Schizochytrium aggregatum ATCC 28209 (MMETSP0965) National Center for Genome Resources 3300016708 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 8.0 53.0 17663546 22094 2 13 2 18 0.0 Metatranscriptome 3300007221 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_C1_LD (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007221 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 93622529 330824 16690 12472 43703 31828 SRX3197483 Unrestricted 0.0 Metatranscriptome 3300008457 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34685 J. Craig Venter Institute (JCVI) 3300008457 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 15173 21 0 0 0 0 0.0 Metatranscriptome 3300010154 *Microbiome Permanent Draft Soil microbial communities from various locations in USA and Cambodia to study soil gas exchange rates Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010154 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Temperate forest Soil Unclassified Soil 45.8056 -90.0794 671257491 1563911 42 925 1286 5598 SRX2525516 Unrestricted 0.0 Metatranscriptome 3300030650 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 7_T1E_8DKB8 developmental time series (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030650 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 37223249 52554 30 78 467 460 SRX4645836 Unrestricted 0.0 Metatranscriptome 3300030551 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cb3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030551 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 300804162 641720 124 158 1897 798 SRX4547035 Unrestricted 0.0 Metatranscriptome 3300037663 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_OW2_C1_D1_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037663 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 69294421 139198 228 1655 1586 4143 SRX9385902 Unrestricted 169.63 Metatranscriptome 3300028075 *Microbiome Permanent Draft Enriched cultures of PCE-dechlorinating microbial communities from Ithaca, New York, USA Metatranscriptome of enriched cultures of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.S12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028075 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes rer26@cornell.edu Ruth Richardson No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified defined medium 42.4447 -76.485 68343657 106029 11 3 178 6 SRX5087129 Unrestricted 129.48 Metatranscriptome 3300002682 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_120m_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002682 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 23477755 60148 72 39 431 815 SRX3323210 Unrestricted 0.0 Metatranscriptome 3300012718 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES050 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012718 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 162256832 316007 104 92 438 2790 SRX3010815 Unrestricted 0.0 Metatranscriptome 3300052751 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_31B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052751 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Bulk soil Soil 38.992973 -123.067448 74224241 198955 127 150 1480 888 Unrestricted 89.04 Metatranscriptome 3300010988 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-7 (Eukaryote Community Metatranscriptome) (version 7) (version 4) DOE Joint Genome Institute (JGI) 3300010988 Metatranscriptome Analysis rnaSPAdes v. 0.1.1 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 18.7998 -20.70285 1175443866 2451978 435 518 712 1564 SRX5724273 Unrestricted 0.0 Metatranscriptome 3300037689 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Metatranscriptome of lab enriched marine microbial communities from Marineland, Florida, USA - SWA_02252019_R2_TP0 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037689 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6475 -82.3464 298818910 600177 446 119 1396 613 SRX9142267 Unrestricted 20.85 Metatranscriptome 3300028846 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Ala1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028846 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 31540652 62022 10 13 375 48 SRX5355881 Unrestricted 92.22 Metatranscriptome 3300030896 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T24 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030896 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 28600704 53802 65 21 97 185 SRX5794469 Unrestricted 18.42 Metatranscriptome 3300009752 *Microbiome Permanent Draft Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling - T0-HHNO3 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009752 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes milachis@u.washington.edu Ludmila Chistoserdova No Engineered Modeled Plant nodule Simulated communities (microbial mixture) Unclassified Methane-oxidizing 47.6193 -122.2449 87725480 175213 2 0 323 4 SRX2538109 Unrestricted 0.0 Metatranscriptome 3300030705 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 17_T1F_8DEL1 developmental time series (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030705 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 104377238 152559 37 46 2918 498 SRX4645959 Unrestricted 0.0 Metatranscriptome 3300059681 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_21 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059681 Metatranscriptome Analysis megahit v. 2021-11-04 03:37:27 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 220327911 514318 238 52 590 300 Unrestricted 0.0 Metatranscriptome 3300050380 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T4_3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050380 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 95429576 151025 26 9 211 48 Unrestricted 191.53 Metatranscriptome 3300012750 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES069 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012750 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.041 -89.686 87491926 170328 39 66 1072 2657 SRX3010858 Unrestricted 0.0 Metatranscriptome 3300032453 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day9_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032453 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 34592216 58058 8 0 25 7 SRX6857986 Unrestricted 245.25 Metatranscriptome 3300048958 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 40 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048958 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.6659 -82.0791 23119993 52668 91 72 253 310 Restricted 25.41 Metatranscriptome 3300008288 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34721 J. Craig Venter Institute (JCVI) 3300008288 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 17569 26 0 0 0 0 0.0 Metatranscriptome 3300036163 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8ST15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036163 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 116737809 230859 407 1812 2658 6470 SRX8379798 Unrestricted 56.12 Metatranscriptome 3300003948 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS907_80_12L9 Marine Biological Laboratory 3300003948 Metatranscriptome Analysis CLC Genomics WB7 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933 -130.014 1078867 2888 120 0 110 0 0.0 Metatranscriptome 3300017133 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Arabian Sea in K medium with silica, 15 C, 21 psu salinity and 683 ?mol photons light - Rhizosolenia setigera CCMP 1694 (MMETSP0789) National Center for Genome Resources 3300017133 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 23.5643 58.853 30948229 33315 3 7 3 9 0.0 Metatranscriptome 3300030811 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030811 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 59.9979 10.7895 19660883 41244 123 243 396 1102 SRX5351387 Unrestricted 0.0 Metatranscriptome 3300004544 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 67_HOW9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004544 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 34276100 85012 215 315 701 1012 SRX2725080 Unrestricted 0.0 Metatranscriptome 3300002378 *Microbiome Permanent Draft Biogas fermentation microbial communities from biogas plants in Germany Biogas fermentation microbial communities from Germany - Plant 3 RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002378 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes asczyrba@techfak.uni-bielefeld.de Alexander Sczyrba No Engineered Bioreactor Digestate Anaerobic Unclassified Biogas fermentantion 52.0385 8.4956 326710868 615018 15 15 425 19 SRX2501900 Unrestricted 0.0 Metatranscriptome 3300041984 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Metatranscriptome of feshwater microbial communities from Wisconsin, USA - blackearthcreek_2019_sw_WHONDRS-S19S_0061 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300041984 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 43.1091 -89.6403 42527644 97028 488 855 2209 4059 SRX14870298 Unrestricted 36.07 Metatranscriptome 3300021334 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 500m 12015 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021334 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.6907 -122.3448 327310907 761160 507 302 30288 8898 SRX4010505 Unrestricted 0.0 Metatranscriptome 3300019167 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLU1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019167 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified Plant litter 49.043 13.6183 6693659 12733 26 456 904 2795 SRX5229518, SRX3937009 Unrestricted 0.0 Metatranscriptome 3300019010 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_081 - TARA_N000001428 (ERX1809462-ERR1739838) Canada's Michael Smith Genome Sciences Centre 3300019010 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -44.6241 -52.1505 537253346 1071494 132 89 464 730 0.0 Metatranscriptome 3300037019 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Growout1_08 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037019 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 478171897 1008146 703 47 1135 886 SRX8820567 Unrestricted 21.49 Metatranscriptome 3300019244 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT293_16_1Ra (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019244 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9228 -106.9508 197815621 470344 158 1374 5751 11348 SRX3915638 Unrestricted 0.0 Metatranscriptome 3300054702 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 39-S49Day28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300054702 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 119555886 241078 24 9 110 45 Unrestricted 32.52 Metatranscriptome 3300019058 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_100 - TARA_N000001643 (ERX1782282-ERR1711961) Canada's Michael Smith Genome Sciences Centre 3300019058 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -12.9794 -96.0232 885955 2234 0 3 3 28 0.0 Metatranscriptome 3300046071 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-188 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046071 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4199 -64.1151 85414211 206590 399 23 725 227 Unrestricted 26.99 Metatranscriptome 3300046198 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_6_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046198 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 63455948 106481 1 0 17 0 Restricted 107.54 Metatranscriptome 3300036281 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0608M20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036281 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8962 -97.0386 34244622 53292 101 196 3113 586 SRX8237111 Unrestricted 29.51 Metatranscriptome 3300016877 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in L1 medium with seawater, 20 C, 33 psu salinity and 489 ?mol photons light - unclassified eukaryote CCMP 1999 (MMETSP1475) National Center for Genome Resources 3300016877 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 21.102 -157.06 15769994 17197 8 3 17 5 0.0 Metatranscriptome 3300006235 *Microbiome Permanent Draft Marine sediment microbial communities from different distances from oil contamination, Gulf of Mexico Marine sediment microbial communities, 33.9 km from oil contamination, ambient, Gulf of Mexico - BC463 Yale Center for Genome Analysis 3300006235 Metatranscriptome Analysis idba_tran released per JGI data release policy No Yes phu@lbl.gov Ping Hu No Environmental Aquatic Unclassified Marine Unclassified marine 28.3 -88.2 53400653 132165 1983 1518 12895 3978 0.0 Metatranscriptome 3300002770 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS1_TP1_12L 3300002770 Metatranscriptome Analysis released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 1443480 4134 35 3 80 5 0.0 Metatranscriptome 3300054699 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_TH_060R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300054699 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0586 10.44279 257882564 661583 823 573 3303 2798 Unrestricted 50.13 Metatranscriptome 3300031579 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB21_1120_Surface (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031579 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 74.0136 -139.5971 250319320 457818 150 48 208 771 SRX5651267 Unrestricted 16.82 Metatranscriptome 3300052396 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_30 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052396 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 103826282 265691 298 171 822 926 Unrestricted 81.1 Metatranscriptome 3300042415 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_38E_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042415 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 40118526 50109 2 0 8 1 Unrestricted 299.73 Metatranscriptome 3300010924 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS6_55_TP1_13H Marine Biological Laboratory 3300010924 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 4193925 9099 232 1 256 4 0.0 Metatranscriptome 3300022713 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022713 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 157737533 377623 304 575 4836 4070 SRX4408806 Unrestricted 0.0 Metatranscriptome 3300019156 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLE3 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019156 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified Plant litter 49.0431 13.617 10252319 20781 24 362 585 2159 SRX5229520, SRX3937014 Unrestricted 0.0 Metatranscriptome 3300035355 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0819S56 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035355 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0388 126688404 273209 337 56 8416 176 SRX8237528 Unrestricted 42.96 Metatranscriptome 3300048970 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 58 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048970 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.7385 -82.2743 31900041 69091 76 18 245 112 Restricted 24.28 Metatranscriptome 3300021304 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.300 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021304 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.302 -123.036 75029987 166246 150 1373 1414 7110 SRX4016102 Unrestricted 0.0 Metatranscriptome 3300055431 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Metatranscriptome of sediment microbial communities from freshwater Prado Wetlands in Corona, California, USA - CSM_Prado_Oct18_AM_2.5z2 (Eukaryote Community Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300055431 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Wetlands Freshwater Sediment Sediment 33.919031 -117.617686 24518280 33653 4 4 33 14 Unrestricted 0.0 Metatranscriptome 3300005502 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_2100 MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005502 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 74387142 173720 1803 141 6252 266 SRX2521853, SRX2521854 Unrestricted 0.0 Metatranscriptome 3300052882 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 27-S43Day63 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052882 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 231027756 469028 40 8 139 75 Unrestricted 74.87 Metatranscriptome 3300043798 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA58 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043798 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Unclassified Soil Unclassified soil 35.7877 -78.6442 12199282 27151 157 347 1232 1867 Unrestricted 94.06 Metatranscriptome 3300042403 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Metatranscriptome of estuarine water microbial communities from San Francisco Bay, California, United States - Nov18_FB_3_27D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042403 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 37.6183 -122.2916 36201075 81006 165 144 340 1007 Unrestricted 41.91 Metatranscriptome 3300046435 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_37_Control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046435 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.156 -81.3619 47718293 111072 67 119 1065 645 Unrestricted 36.35 Metatranscriptome 3300012778 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Croche, Canada - C_130208_E_mt (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012778 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.8319 -72.5 229363447 490079 442 550 5875 8454 SRX3015161 Unrestricted 0.0 Metatranscriptome 3300008699 *Microbiome Permanent Draft Microbial communities of saline water collected from the North Sea in Germany Microbial communities of saline water collected from the North Sea in Germany - HE327_1 Goettingen Genomics Laboratory 3300008699 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified North sea 53.8955 8.0496 8480883 31412 272 668 2415 3083 0.0 Metatranscriptome 3300018785 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_038 - TARA_N000000045 (ERX1789545-ERR1719351) Canada's Michael Smith Genome Sciences Centre 3300018785 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 19.0393 64.4913 183502579 387441 1 10 4 118 0.0 Metatranscriptome 3300035608 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0606S02 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300035608 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8959 -97.0388 46286332 103277 179 756 3110 2565 SRX9140061, SRX9140062 Unrestricted 0.0 Metatranscriptome 3300049533 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049533 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 203672636 500308 243 199 1407 1267 Unrestricted 69.31 Metatranscriptome 3300003525 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS900_Dependable_RNA 3300003525 Metatranscriptome Analysis CLC genomics workbench 7.0 released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.87992 -129.80294 1234175 4911 30 6 122 9 0.0 Metatranscriptome 3300030678 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under control temperature from Pennsylvania, USA - 25_T2E_2612KB8 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030678 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 68972327 91651 0 12 19 328 SRX4646387 Unrestricted 0.0 Metatranscriptome 3300008702 *Microbiome Permanent Draft Microbial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean Microbial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean - CTD-06-46 University of Michigan 3300008702 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vents 32147388 107417 1039 43 8920 670 0.0 Metatranscriptome 3300046580 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-73 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046580 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4383 -64.163 79060468 195321 717 27 1189 329 Unrestricted 30.87 Metatranscriptome 3300022353 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States - R8.37A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022353 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 46.232 -123.889 22459622 45284 67 54 236 453 SRX4014535 Unrestricted 0.0 Metatranscriptome 3300041454 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_10 MetaT AgResearch, New Zealand, Mosgeil 3300041454 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Rhizoplane Roots Dairy farm pasture -43.648506 172.343549 22288582 39589 685 456 2922 1182 0.0 Metatranscriptome 3300012370 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from Louisiana Shelf, Gulf of Mexico - GoM_2015_C6C_209_2m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012370 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 28.8679 -90.4764 93078101 187766 253 1260 1258 11397 Unrestricted 0.0 Metatranscriptome 3300011293 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S14 O2min_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011293 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 44475681 107752 40 27 6167 1654 SRX3787152 Unrestricted 0.0 Metatranscriptome 3300017175 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater and 4nM iron, 19 C, 35 psu salinity and 598 ?mol photons light - Thalassiosira weissflogii CCMP 1010 (MMETSP1412) National Center for Genome Resources 3300017175 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.0 -65.0 33026938 34753 2 3 2 4 0.0 Metatranscriptome 3300018644 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_111 - TARA_N000001816 (ERX1782112-ERR1712144) Canada's Michael Smith Genome Sciences Centre 3300018644 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -16.9587 -100.6751 95093489 199791 64 19 248 269 0.0 Metatranscriptome 3300011040 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 79 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011040 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 25947290 63792 182 153 19834 1042 Unrestricted 0.0 Metatranscriptome 3300052371 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_147 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052371 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 42519653 113491 110 114 736 665 Unrestricted 100.89 Metatranscriptome 3300044481 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA70 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300044481 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Unclassified Soil Unclassified soil 35.7877 -78.6442 182827106 399851 161 306 1721 2035 Unrestricted 34.64 Metatranscriptome 3300030024 *Microbiome Permanent Draft North Pond metatranscriptomes Metatranscriptome of crustal fluid microbial communities from North Pond, Mid-Atlantic Ridge, Atlantic Ocean - 1382A 2012 Marine Biological Laboratory 3300030024 Metatranscriptome Analysis IDBA-UD v. 1.1.2 released by JGI data releasing policy No Yes lmseyler@gmail.com Lauren Seyler No Environmental Aquatic Oceanic Marine Crustal Fluids Oceanic crustal fluids 22.75 -46.083 3273825 5888 1502 352 2554 509 0.0 Metatranscriptome 3300037768 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - F18NovD (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037768 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.423 16.6683 91279570 185630 40 328 491 1154 SRX9165638 Unrestricted 46.63 Metatranscriptome 3300030794 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030794 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7416 -117.7042 21150559 39526 55 64 74 323 SRX5351931 Unrestricted 75.44 Metatranscriptome 3300010246 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_2300_B MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010246 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 54679989 123111 3348 7 12939 77 SRX2521681, SRX2521682 Unrestricted 0.0 Metatranscriptome 3300007327 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaT_ABR_2013 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007327 Metatranscriptome Analysis megahit v. 0.2.0 No Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment watersheds 41.1752 -78.4168 124622409 435928 12005 12332 40893 24913 SRX2745517 Unrestricted 0.0 Metatranscriptome 3300030713 *Microbiome Permanent Draft Soil microbial communities from Risofladan, Vaasa, Finland Metatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - TR-1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030713 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes eva.hogfors-ronnholm@novia.fi Eva Hogfors-Ronnholm Yes Environmental Terrestrial Coastal area Soil Acid sulfate soil soil 63.0472 21.7116 18344297 38177 56 41 490 101 SRX5356425 Unrestricted 68.33 Metatranscriptome 3300022147 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 2-17 MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022147 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9363 -83.5573 36737016 73389 382 1355 12053 9440 SRX4393156 Unrestricted 0.0 Metatranscriptome 3300006577 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006577 Metatranscriptome Analysis megahit v. 0.2.0 No Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil 45.54 -73.72 654846585 2341222 125 153 303 428 SRX2521910 Unrestricted 0.0 Metatranscriptome 3300050683 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae culture inoculated with mixed bacterial community from LLNL, Livermore, California, USA - f5_d2_A_S09 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050683 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 44840936 67443 4 0 15 2 Restricted 83.89 Metatranscriptome 3300031108 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031108 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 31925261 63516 74 65 82 375 SRX5352177 Unrestricted 28.53 Metatranscriptome 3300016817 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in L1 medium w/o silica, 20 C, 35 psu salinity and 344 ?mol photons light - Ostreococcus mediterraneus clade D RCC 2593 (MMETSP0937) National Center for Genome Resources 3300016817 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 3.6 43.4 11535006 10964 16 2 30 4 0.0 Metatranscriptome 3300031036 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E7_X_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031036 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 227795607 664062 782 945 1856 2323 SRX3341787 Unrestricted 0.0 Metatranscriptome 3300005646 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_057 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005646 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Permafrost soil 68.6135 -149.3144 409817937 1164068 248 1700 1003 3399 SRX2522110 Unrestricted 0.0 Metatranscriptome 3300002649 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF121 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002649 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 4421872 11365 71 514 425 2648 SRX2014406 Unrestricted 0.0 Metatranscriptome 3300003286 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 78 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003286 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 2286898 6692 10 40 293 231 Unrestricted 0.0 Metatranscriptome 3300037642 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_M1_C3_D3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037642 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 62348930 115611 343 1589 2823 4630 SRX9383811 Unrestricted 206.72 Metatranscriptome 3300006273 *Microbiome Permanent Draft Prairie soil microbial communities from Kansas, USA, after rainfall Prairie soil microbial communities from Kansas, USA, after rainfall - K03 Oregon State University 3300006273 Metatranscriptome Analysis VELVET 1.2.10, combine 23, 27, 31 released per JGI data release policy No Yes lzeglin@ksu.edu Lydia Zeglin No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.1038 -96.6133 600342 3612 6 2 11 1 0.0 Metatranscriptome 3300017103 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Great South Bay, New York in GSe medium with ammonium, 22 C, 32 psu salinity and 176 ?mol photons light - Aureococcus anophagefferens CCMP 1850 (MMETSP0917) National Center for Genome Resources 3300017103 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Estuary marine 40.6508 -73.1524 21754981 31979 3 4 4 6 0.0 Metatranscriptome 3300019070 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_136 - TARA_N000002963 (ERX1789706-ERR1719363) Canada's Michael Smith Genome Sciences Centre 3300019070 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 17.0149 -118.9173 11389582 28826 1 5 5 56 0.0 Metatranscriptome 3300047421 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 819574c4-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047421 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 202463646 499777 414 273 1877 1538 Unrestricted 44.72 Metatranscriptome 3300037079 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp03_R74 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037079 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 318319105 627598 322 74 731 1008 SRX8840994 Unrestricted 44.68 Metatranscriptome 3300032449 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day9_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032449 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 33371867 57216 12 1 50 2 SRX6857977 Unrestricted 137.14 Metatranscriptome 3300006700 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP1893 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006700 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 21.0382 -150.1913 71513944 224836 1007 500 3035 1718 SRX3326580 Unrestricted 0.0 Metatranscriptome 3300036455 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - WOF_Exp2_160M_T0_031519 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036455 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 169036651 333937 440 114 906 1514 Unrestricted 21.6 Metatranscriptome 3300008030 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Puerto Morelos, Mexico - Siderastrea T C metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300008030 Metatranscriptome Analysis megahit v. 0.2.0 No Yes momedinamunoz@gmail.com Monica _ Medina, Medina Medina No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral host 21.0853 -87.0617 320744131 523470 355 280 1215 895 SRX3362779 Unrestricted 0.0 Metatranscriptome 3300007155 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C_top_diel_T=5 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007155 Metatranscriptome Analysis megahit v. 0.2.0 No Yes binskeep@montana.edu, binskeep@montana.edu; jim.fredrickson@pnnl.gov William Inskeep, William P. Inskeep; Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Microbial mats 44.7219 -110.7021 11314365 31922 6966 11 6863 31 SRX2522154 Unrestricted 0.0 Metatranscriptome 3300012694 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES054 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012694 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.041 -89.686 94513762 176887 43 95 405 1973 SRX3010816 Unrestricted 0.0 Metatranscriptome 3300024532 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Miss_RepA_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024532 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 169403150 362077 83 229 1599 1488 SRX4547784 Unrestricted 26.39 Metatranscriptome 3300030871 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E4_R_0.2 metaT (Eukaryote Community Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300030871 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 247654124 515333 18 20 270 313 SRX3195625, SRX3341219 Unrestricted 0.0 Metatranscriptome 3300031495 *Microbiome Permanent Draft Soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_N_R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031495 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thb15@psu.edu Terrence Bell No Engineered Artificial ecosystem Surface biofilm Soil microcosm Unclassified soil 40.7997 -77.8629 48180715 98703 200 64 810 683 SRX5811862 Unrestricted 133.46 Metatranscriptome 3300031003 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Litter GP-3A (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031003 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr; dcullen@wisc.edu Francis M. Martin; Daniel Cullen No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 45.7589 -113.9119 1372216644 4033042 1433 273 2861 639 SRX3343335 Unrestricted 0.0 Metatranscriptome 3300011317 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S17 DCM_B metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011317 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 94533503 226030 79 49 1889 2261 SRX3787217 Unrestricted 0.0 Metatranscriptome 3300030922 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A9_OS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300030922 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate/submediterranean forest 42.0 1.0 401883867 930072 500 290 7672 4564 SRX2999361 Unrestricted 0.0 Metatranscriptome 3300008442 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy - t10.CR.B.RNAseq.exp2 University of Naples 3300008442 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Cheese 1014132 2334 5 1 49 13 0.0 Metatranscriptome 3300046074 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-195 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046074 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4199 -64.1151 149916522 359651 441 26 826 401 Unrestricted 22.85 Metatranscriptome 3300036284 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0608U20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036284 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8973 -97.0409 50002407 104868 245 846 5512 2560 SRX8237147 Unrestricted 35.23 Metatranscriptome 3300002656 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF143 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002656 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.53312 -72.189707 6021844 16619 52 420 475 2045 SRX2014432 Unrestricted 0.0 Metatranscriptome 3300035568 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Metatranscriptome of soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_Dec_plot3_rep2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035568 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6591 -80.6279 452153248 1047202 308 218 3841 1649 SRX8186803 Unrestricted 38.93 Metatranscriptome 3300012522 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012522 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 38.0754 -76.1533 267881789 557521 98 151 827 5891 SRX3007422 Unrestricted 0.0 Metatranscriptome 3300008962 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier in Georgia, USA Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5 Georgia Institute of Technology 3300008962 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Lake Lanier in Georgia, USA 265587450 884655 485 113 4790 1260 0.0 Metatranscriptome 3300027272 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0939-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300027272 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 244487512 433364 37 13 20 26 SRX5244863 Unrestricted 71.22 Metatranscriptome 3300001808 *Microbiome Permanent Draft Microbial community impact on carbon sequestration in managed wetland Carbon farming Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site L1 Bulk Metatranscriptome (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300001808 Metatranscriptome Analysis No Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Wetland 38.1067 -121.6464 100775026 300958 109 419 8550 4028 SRX2553479 Unrestricted 0.0 Metatranscriptome 3300037666 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_OW2_C1_D2_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037666 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 72965088 138779 457 2339 3934 5598 SRX9385903 Unrestricted 159.93 Metatranscriptome 3300026443 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 4R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026443 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 181316324 320402 139 32 195 361 SRX4666653 Unrestricted 30.44 Metatranscriptome 3300004640 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI047_135m_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004640 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 105642249 283196 2660 796 7731 2440 Unrestricted 0.0 Metatranscriptome 3300030814 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030814 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 59.9982 10.7894 44952402 110845 101 121 472 631 SRX5351394 Unrestricted 0.0 Metatranscriptome 3300004541 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 115_HOW13 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004541 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 34269185 77553 86 9 370 18 SRX2780193 Unrestricted 0.0 Metatranscriptome 3300041981 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Metatranscriptome of feshwater microbial communities from Wyoming, USA - littlewindriver_2019_sw_WHONDRS-S19S_0009 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300041981 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 42.9875 -108.3982 112060425 254877 217 367 1719 2100 Unrestricted 36.41 Metatranscriptome 3300017280 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Ligurian Sea in autoclaved artificial seawater, 19 C, 33 psu salinity and 638 ?mol photons light - Strombidium inclinatum S3 (MMETSP0208) National Center for Genome Resources 3300017280 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 43.3 10.2 39373457 86992 22 3 40 6 0.0 Metatranscriptome 3300002865 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Avena fatua rhizosphere microbial communities - H1_Bulk_Litter_4 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002865 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes mkfstone@berkeley.edu, nuccio1@llnl.gov; mkfstone@berkeley.edu Mary Firestone, Erin Nuccio; Mary Firestone No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.97364 -123.117453 7251602 20478 101 174 934 1265 SRX2557993 Unrestricted 0.0 Metatranscriptome 3300030893 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T32 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030893 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 26027225 48424 49 23 88 168 SRX5352671 Unrestricted 18.21 Metatranscriptome 3300049079 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_2 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300049079 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 97744272 229920 176 36 407 202 Unrestricted 21.66 Metatranscriptome 3300039421 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metataranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0819M20re (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300039421 Metatranscriptome Analysis MEGAHIT v. 1.2.9 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0387 184974662 397891 315 407 11274 1216 SRX8669972 Unrestricted 33.23 Metatranscriptome 3300008548 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-25 University of Hawaii 3300008548 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 144259 209 0 0 55 8 0.0 Metatranscriptome 3300017008 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Sea in K medium, 14 C, 21 psu salinity and 372 ?mol photons light - Asterionellopsis glacialis CCMP 1581 (MMETSP1394) National Center for Genome Resources 3300017008 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 51.7333 3.7667 23527866 26090 5 1 10 3 0.0 Metatranscriptome 3300009747 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from Louisiana Shelf, Gulf of Mexico - GoM_2015_C6C_197_2m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009747 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 28.8679 -90.4764 70415678 130844 164 1343 1030 8625 Unrestricted 0.0 Metatranscriptome 3300023302 *Microbiome Permanent Draft Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Soil microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B3.stcc.R1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300023302 Metatranscriptome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes colemanderr@gmail.com Devin Coleman-Derr No Environmental Terrestrial Unclassified Soil Agricultural land field soil 36.339058 -120.12031 7169447 13347 520 761 3610 2332 0.0 Metatranscriptome 3300036166 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp02_R32 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036166 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 124830948 273933 692 80 1450 1666 SRX9167790 Unrestricted 25.44 Metatranscriptome 3300021938 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Metatranscriptome of freshwater microbial communities from pre-fracked creek in Pennsylvania, United States - EE:C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021938 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Unclassified freshwater 41.6128 -78.4214 109516520 265656 404 1589 11643 9943 SRX4009980 Unrestricted 0.0 Metatranscriptome 3300021331 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.456 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021331 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.286 -124.052 201436191 498526 110 883 1780 3027 SRX4016654 Unrestricted 0.0 Metatranscriptome 3300017136 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Yellow Sea in f/2 medium w/o silicate, 20 C, 32 psu salinity and 220 ?mol photons light - Pyramimonas parkeae CCMP 726 (MMETSP0059) National Center for Genome Resources 3300017136 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 36.64 121.93 39454207 46108 8 3 6 3 0.0 Metatranscriptome 3300019241 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019241 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 4.0627 -73.195 176366332 446825 912 1142 137674 7127 SRX3936993 Unrestricted 0.0 Metatranscriptome 3300016797 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041408BS metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016797 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 690222750 1365323 10 3 325 113 SRX3781464 Unrestricted 0.0 Metatranscriptome 3300017332 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Puget Sound, Washington in HESNW medium w/o silica, 16 C, 30 psu salinity and 231 ?mol photons light - Noctiluca scintillans (MMETSP0253) National Center for Genome Resources 3300017332 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 56152323 64395 1 4 1 5 0.0 Metatranscriptome 3300032709 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red2_28May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032709 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 574182340 1018881 23 5 34 140 SRX6410020 Unrestricted 37.62 Metatranscriptome 3300026425 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepA_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026425 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 108557415 236313 100 79 374 629 SRX4797001 Unrestricted 26.0 Metatranscriptome 3300046107 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-128 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046107 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4479 -64.2031 75773792 176564 411 44 799 1262 Unrestricted 23.82 Metatranscriptome 3300018979 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_153 - TARA_N000002817 (ERX1782403-ERR1712037) Canada's Michael Smith Genome Sciences Centre 3300018979 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 44.0497 -16.6034 374177303 835001 158 29 497 477 0.0 Metatranscriptome 3300010022 *Microbiome Permanent Draft Black Band Disease transitions Microbial communities of stony corals with Black-band disease (BBD) from Carrie Bow Cay Field Station, Belize; BBD Transitions coral #3 sample H3N University of Maryland 3300010022 Metatranscriptome Analysis IDBA-Tran v1.1.1 released per JGI data release policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified marine 16.80288 -88.08213 452584797 920490 2 10 13 37 0.0 Metatranscriptome 3300059491 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 12R_AW_T1_R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059491 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 427416555 1056154 553 336 1905 1963 Unrestricted 43.29 Metatranscriptome 3300059684 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_24 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059684 Metatranscriptome Analysis megahit v. 2021-11-16 22:48:23 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 261934198 605822 245 71 693 280 Unrestricted 0.0 Metatranscriptome 3300009828 *Microbiome Permanent Draft Sorghum rhizosphere soil microbial communities from California, USA Sorghum rhizosphere soil microbial communities in Albany, CA(condition:control)- sample E QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300009828 Metatranscriptome Analysis Trinity released per PI Yes Yes xuling@berkeley.edu Ling Xu No Host-associated Plants Rhizosphere Roots Soil soil 37.887207 -122.304401 39778857 100571 2778 7458 10304 21336 0.0 Metatranscriptome 3300052754 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_44 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052754 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 50921279 136264 127 118 587 694 Unrestricted 69.91 Metatranscriptome 3300031075 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T11 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031075 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 18035460 35831 84 72 155 380 SRX5329009 Unrestricted 25.53 Metatranscriptome 3300033538 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_28AUG2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300033538 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.3757 298539362 549303 86 79 133 463 SRX7706875 Unrestricted 50.84 Metatranscriptome 3300019149 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS695_3p0_dT J. Craig Venter Institute (JCVI) 3300019149 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 276680583 627545 504 878 750 1423 0.0 Metatranscriptome 3300047607 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_7_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047607 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 30666014 53754 3 0 28 0 Restricted 416.41 Metatranscriptome 3300038298 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_OW2_C1_D3_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038298 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 52621248 107174 385 966 5169 2873 SRX9391589 Unrestricted 204.12 Metatranscriptome 3300046628 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-161 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046628 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4757 -64.2279 102219885 242601 922 28 1610 568 Unrestricted 17.01 Metatranscriptome 3300013075 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Organic Plus compost microbial communities from Emeryville, California, USA - RNA 5th pass 30_C Kraft OP (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013075 Metatranscriptome Analysis megahit v. 1.0.6 No Yes jmgladden@lbl.gov John Gladden No Environmental, Engineered Terrestrial, Solid waste Composting Soil, Mixed feedstock Commercial compost compost 37.83 -122.29 91951012 157837 1 866 165 2095 SRX3902093 Unrestricted 0.0 Metatranscriptome 3300052393 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_209 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052393 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 223176738 561646 199 156 1350 1012 Unrestricted 61.61 Metatranscriptome 3300022367 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States - R1161 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022367 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 46.167 -124.158 35353278 74614 144 111 316 1388 SRX4015611 Unrestricted 0.0 Metatranscriptome 3300043818 *Microbiome Permanent Draft Green algae associated microbial communities from Chlorella culture in University of Arizona, United States Metatranscriptome of green algae associated microbial communities from Chlorella culture in University of Arizona, USA - V. chlorellavorus infection vv_d4_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043818 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jbrown@ag.arizona.edu Judith Brown No Host-associated Algae Unclassified Green algae Unclassified green algae 32.2308 -110.9534 60216676 104537 4 8 34 15 Unrestricted 119.02 Metatranscriptome 3300006934 *Microbiome Permanent Draft Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, for analyzing deforestation at different spatial scales Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A1 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300006934 Metatranscriptome Analysis megahit v. 0.2.0 No Yes nusslein@microbio.umass.edu Nusslein, Klaus, Klaus Nusslein No Environmental Terrestrial Tropical forest Soil Unclassified Tropical rainforest soil -10.0 -62.0 74915577 267298 13157 1951 63980 6203 SRX2566806 Unrestricted 0.0 Metatranscriptome 3300008840 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_3070 Massachusetts Institute of Technology 3300008840 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 3989026 13437 13 7 323 696 0.0 Metatranscriptome 3300030554 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cnb5 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030554 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 302621027 604057 195 258 1781 1081 SRX4547037 Unrestricted 0.0 Metatranscriptome 3300030776 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 Emin (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030776 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7585 6.3578 330415834 959014 9072 1339 16304 3790 SRX3351896 Unrestricted 0.0 Metatranscriptome 3300036541 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0819M12 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300036541 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0387 84059387 184739 338 769 4523 2450 SRX9140151, SRX9140152 Unrestricted 0.0 Metatranscriptome 3300066460 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Metatranscriptome of woodchip biofilm microbial communities from lab scale WBRs in New York, USA - hf_drw_p2_t8_h52_prok (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300066460 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 75884649 184909 112 100 1248 536 Unrestricted 0.0 Metatranscriptome 3300031191 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_L6_8mM_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031191 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 32131789 48129 2 0 1 5 SRX5783518 Unrestricted 65.76 Metatranscriptome 3300051613 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 168_100_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051613 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 136483723 350286 306 252 1978 1611 Unrestricted 56.06 Metatranscriptome 3300003680 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - water-only treatment rep 3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003680 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.099444 -73.604444 29777988 90455 12 269 248 2109 SRX3526949, SRX3526950 Unrestricted 0.0 Metatranscriptome 3300005240 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0700_T MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005240 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 41785827 100062 90 0 349 4 SRX2521519, SRX2521520 Unrestricted 0.0 Metatranscriptome 3300018721 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_070 - TARA_N000000666 (ERX1789483-ERR1719260) Canada's Michael Smith Genome Sciences Centre 3300018721 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -20.4035 -3.1859 136086354 309584 0 12 0 49 0.0 Metatranscriptome 3300031078 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031078 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 15505766 30065 75 25 149 161 SRX5794197 Unrestricted 23.88 Metatranscriptome 3300046239 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_2_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046239 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 83185211 126394 7 63 136 215 Restricted 361.43 Metatranscriptome 3300009404 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from Amazon river, Brazil - RCM6 University of Georgia 3300009404 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic River Freshwater Unclassified River water 131264481 385818 60 24 576 279 SRX860853 0.0 Metatranscriptome 3300033535 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_28AUG2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300033535 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.3757 443840689 825576 157 99 275 723 SRX7706893 Unrestricted 50.7 Metatranscriptome 3300030589 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO133-ANR019SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030589 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2719 -71.2088 686053650 1458653 91 171 3156 1405 SRX4010659 Unrestricted 0.0 Metatranscriptome 3300017380 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in MLH medium with 10g/L glucose, double vitamins, at 27 C, 30 psu salinity and 449 ?mol photons light - Crypthecodinium cohnii Seligo (MMETSP0324_2) National Center for Genome Resources 3300017380 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 66360792 96434 0 3 0 3 0.0 Metatranscriptome 3300052763 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_6B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052763 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Bulk soil Soil 38.992973 -123.067448 161776173 421031 184 188 1569 1058 Unrestricted 61.54 Metatranscriptome 3300006391 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S5 DCM_B metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006391 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@mail.ubc.ca, shallam@interchange.ubc.ca Steven J Hallam, Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 197969122 564288 1399 2769 4449 9503 SRX3196557 Unrestricted 0.0 Metatranscriptome 3300026428 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Colum_RepB_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026428 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 137918835 248753 67 138 359 820 SRX4547812 Unrestricted 15.99 Metatranscriptome 3300028113 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepC_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028113 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 321752458 671939 71 169 909 1466 SRX5245484 Unrestricted 23.62 Metatranscriptome 3300021307 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_06_16RNAfungal (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021307 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 85981458 206703 1421 452 28527 3304 SRX4809083 Unrestricted 0.0 Metatranscriptome 3300005416 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom. Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel2S_0400h metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005416 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sgtringe@lbl.gov, rmmckay@bgsu.edu Susannah Tringe, Robert M. McKay No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.69957 -83.2941 168673205 452318 906 6807 2397 15724 SRX3556413 Unrestricted 0.0 Metatranscriptome 3300018686 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_052 - TARA_N000000593 (ERX1789430-ERR1719415) Canada's Michael Smith Genome Sciences Centre 3300018686 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -16.953 53.9825 109330249 278313 0 46 5 344 0.0 Metatranscriptome 3300036151 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Omics14_030918 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036151 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 151634457 338673 198 73 483 1152 SRX8834325 Unrestricted 64.52 Metatranscriptome 3300020089 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 2.7-0.2um, replicate b, metaT Georgia Genomics Facility 3300020089 Metatranscriptome Analysis Trinity 2.06 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 26973437 78147 5189 655 11230 1852 0.0 Metatranscriptome 3300016776 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011505AT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016776 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 398801646 867709 150 417 2793 5492 SRX3780728 Unrestricted 0.0 Metatranscriptome 3300032461 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day14_9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032461 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 27151470 44614 8 0 58 0 SRX7582883 Unrestricted 202.53 Metatranscriptome 3300009006 *Microbiome Permanent Draft Eukaryotic communities from seawater of the North Pacific Subtropical Gyre Eukaryotic communities from seawater of the North Pacific Subtropical Gyre - HoeDylan_E2 Woods Hole Oceanographic Institution 3300009006 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ocean water 22.75 -158.0 1378410990 5343872 44 57 354 579 0.0 Metatranscriptome 3300043833 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA7 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043833 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Unclassified Soil Unclassified soil 35.7877 -78.6442 95893853 207342 77 153 1390 1223 Unrestricted 27.7 Metatranscriptome 3300008809 *Microbiome Permanent Draft Microbial communities from harbor seals stranded along the coast of California, USA Microbial communities from harbor seals stranded along the coast of California, USA - UCD4 Oregon State University 3300008809 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Brain Nervous system Unclassified Harbor seal brain 37.8592 -122.4853 420447768 768008 0 4 77 11 ERX1190717 0.0 Metatranscriptome 3300010927 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS917_55_13C_TP1_7 Marine Biological Laboratory 3300010927 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 7388285 15131 340 1 1320 11 0.0 Metatranscriptome 3300021231 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from nest - French Guiana - 10-1 mRNA SA University of Luxembourg 3300021231 Metatranscriptome Analysis CLC Genomics Workbench Version 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 5.06224 -53.047407 70764986 193161 0 3 2 9 0.0 Metatranscriptome 3300048604 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_1_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048604 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 35077149 50705 1 0 22 0 Restricted 445.72 Metatranscriptome 3300012963 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012963 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 37.5161 -76.1223 209487561 456405 288 776 1725 7439 SRX3007433 Unrestricted 0.0 Metatranscriptome 3300002661 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF145 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002661 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.53312 -72.189707 6577468 17884 77 496 592 2298 SRX2014430 Unrestricted 0.0 Metatranscriptome 3300018647 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_072 - TARA_N000000833 (ERX1782439-ERR1712057) Canada's Michael Smith Genome Sciences Centre 3300018647 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.7296 -17.9604 83972025 201614 89 30 485 592 0.0 Metatranscriptome 3300043815 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_256 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043815 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 123957834 284311 136 409 4006 2108 Unrestricted 52.15 Metatranscriptome 3300007612 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S19 DCM_A metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007612 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 135174406 441603 1091 2032 4274 6376 SRX3787271 Unrestricted 0.0 Metatranscriptome 3300004259 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor, Time F- 52min-Aerobic_ RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004259 Metatranscriptome Analysis megahit v. 0.2.0 No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 297346466 618296 324 870 722 2660 SRX2518191 Unrestricted 0.0 Metatranscriptome 3300059662 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_2 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059662 Metatranscriptome Analysis megahit v. 2021-11-04 02:08:44 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 97744272 236291 176 36 407 202 Unrestricted 0.0 Metatranscriptome 3300035616 *Microbiome Permanent Draft Sediment microbial communities from Lake Washington near Medina, WA, United States Metatranscriptome of methane-enriched sediment microbial communities from Lake Washington, WA, United States - HO-FL-2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035616 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment sediment 47.6215 -122.2558 101199334 126101 10 2 15 31 SRX8379872 Unrestricted 226.83 Metatranscriptome 3300020063 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT730_16_1Ra (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300020063 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9229 -106.9517 201832116 471541 70 538 7550 3932 SRX3915680 Unrestricted 0.0 Metatranscriptome 3300041457 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaT AgResearch, New Zealand, Mosgeil 3300041457 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Rhizoplane Roots Dairy farm pasture -43.648506 172.343549 8405604 14895 284 230 1223 530 0.0 Metatranscriptome 3300031752 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from Antarctic Ocean - PS103-59 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031752 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified marine -63.4827 -51.5956 737466421 1324155 11 3 51 42 SRX5356533 Unrestricted 13.61 Metatranscriptome 3300017073 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in Aquil medium, 13 C, 21 psu salinity and 634 ?mol photons light - Ditylum brightwellii Pop2 (SS10) (MMETSP1063) National Center for Genome Resources 3300017073 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 38203082 40807 8 4 11 10 0.0 Metatranscriptome 3300019100 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_081 - TARA_N000001428 (ERX1809468-ERR1739839) Canada's Michael Smith Genome Sciences Centre 3300019100 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -44.6241 -52.1505 132587373 250992 52 48 203 406 0.0 Metatranscriptome 3300037651 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_N3_C1_D3_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037651 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 53623905 111012 450 809 4398 2010 SRX9385199 Unrestricted 265.38 Metatranscriptome 3300038295 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_OW2_C1_D6_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038295 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 26779074 53766 362 121 3983 387 SRX9391590 Unrestricted 304.82 Metatranscriptome 3300030563 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Dnb6 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030563 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 262552239 653154 109 157 1404 860 SRX4547308 Unrestricted 0.0 Metatranscriptome 3300046625 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-142 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046625 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4615 -64.2246 110724365 265677 957 39 1703 601 Unrestricted 16.5 Metatranscriptome 3300013078 *Microbiome Permanent Draft Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013078 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes christopher.s.miller@ucdenver.edu Christopher S. Miller No Environmental Aquatic Wetlands Freshwater Unclassified freshwater wetlands 41.3778 -82.5108 111323095 287278 1422 332 106951 2137 SRX3015107 Unrestricted 0.0 Metatranscriptome 3300059659 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 157R_AD_T3_R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059659 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 75290842 187089 249 275 1578 1605 Unrestricted 63.31 Metatranscriptome 3300009843 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 3, surface; RNA IDBA-UD Marine Biological Laboratory 3300009843 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 7.58 14570925 33734 299 588 1573 713 0.0 Metatranscriptome 3300021870 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S1 C1 B19 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021870 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 30.018594 -15.070508 17244450 51654 95 55 188 162 SRX5203966 Unrestricted 0.0 Metatranscriptome 3300016814 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in L1 medium with artificial seawater, 25 C, 31 psu salinity and 699 ?mol photons light - Symbiodinium kawagutii CCMP 2468 (MMETSP0134_2) National Center for Genome Resources 3300016814 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 21.25 -158.0 3409551 8322 0 0 1 1 0.0 Metatranscriptome 3300004609 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 50 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004609 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 129270910 374854 9442 3463 36467 7732 Unrestricted 0.0 Metatranscriptome 3300016893 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Gulf of Maine in L1 medium with natural Eastern Pacific seawater, no silica (Eastern Pacific), 21 C, 35 psu salinity and 762 ?mol photons light - Micromonas pusilla CCMP 494 (MMETSP1404) National Center for Genome Resources 3300016893 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 19050985 18028 3 1 2 1 0.0 Metatranscriptome 3300035590 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - 28M (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035590 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4316 16.6833 25695846 49041 179 270 5440 903 SRX8209557 Unrestricted 38.33 Metatranscriptome 3300012736 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES021 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012736 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 5246627 15101 30 11 974 1171 SRX3527135 Unrestricted 0.0 Metatranscriptome 3300006574 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006574 Metatranscriptome Analysis megahit v. 0.2.0 No Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil 45.54 -73.72 614233559 2115529 131 19 291 64 SRX2522010 Unrestricted 0.0 Metatranscriptome 3300021913 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-130M (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021913 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 105411203 212678 43 50 76 147 SRX5203263 Unrestricted 0.0 Metatranscriptome 3300022144 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - G-2016_31 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022144 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment sediment 41.5097 -76.4485 56951643 132935 490 1733 7434 23275 SRX4010388 Unrestricted 0.0 Metatranscriptome 3300031437 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_D6_0mM_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031437 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 28721778 40619 0 0 2 2 SRX5783509 Unrestricted 58.24 Metatranscriptome 3300007324 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_C4L_LD (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007324 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 158423740 520015 23999 9897 62330 25329 SRX4343013 Unrestricted 0.0 Metatranscriptome 3300030797 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T0 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030797 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7416 -117.7042 23602539 47679 93 58 160 311 SRX5351930 Unrestricted 27.62 Metatranscriptome 3300023683 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 22R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023683 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 73189681 161821 73 35 449 700 SRX4474496 Unrestricted 24.32 Metatranscriptome 3300023669 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLA5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023669 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 49.0448 13.618 5907544 11355 125 186 1930 1223 SRX4455184, SRX5243271 Unrestricted 0.0 Metatranscriptome 3300017005 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in NEPC medium with nocodazole, at 20 C, 30 psu salinity and 571 ?mol photons light - Thalassiosira minuscula CCMP 1093 (MMETSP0740) National Center for Genome Resources 3300017005 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 15768569 34778 75 24 163 49 0.0 Metatranscriptome 3300031116 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden and USA, for metatranscriptomics studies Metatranscriptome of forest soil fungal communities from Los Alamos, New Mexico, United States - Jemez Pines Pi 5A (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031116 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil soil 35.8911 -106.2978 134928656 422333 3081 1527 5765 3039 SRX5056985 Unrestricted 0.0 Metatranscriptome 3300016922 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of freshwater eukaryotic communities from unknown location in Metatranscriptome of freshwater, at 19 C, 0 psu salinity and 381 ?mol photons light - Blepharisma japonicum Stock R1072 (MMETSP1395) National Center for Genome Resources 3300016922 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 18771269 30746 16 22 34 37 0.0 Metatranscriptome 3300017232 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in modified f/2 medium with seawater, 3 C, 33.6 psu salinity and 448 ?mol photons light - Proboscia alata PI-D3 (MMETSP0174) National Center for Genome Resources 3300017232 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -64.0038 -0.0025 49052068 60918 1 1 4 1 0.0 Metatranscriptome 3300018539 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS667_3p0 J. Craig Venter Institute (JCVI) 3300018539 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 63.49542 19.8135 1063609 4754 6 10 138 201 0.0 Metatranscriptome 3300021935 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S17 C1 B21 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021935 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 45.529783 -12.430106 149184654 252133 84 47 138 176 SRX5204103 Unrestricted 0.0 Metatranscriptome 3300012697 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES082 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012697 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.041 -89.686 101268761 193370 59 75 2187 2974 SRX3010986 Unrestricted 0.0 Metatranscriptome 3300061899 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 40_hairyvetch_3_T0 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061899 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 107850918 264247 199 209 1101 1308 Unrestricted 71.48 Metatranscriptome 3300009579 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_9_15_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009579 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment Wetland 41.224 -82.304 91095883 186446 593 1685 39789 13070 SRX2525186 Unrestricted 0.0 Metatranscriptome 3300028621 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_1_27_40m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028621 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 161096968 328099 339 72 4430 536 SRX5337975 Unrestricted 35.93 Metatranscriptome 3300004792 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004792 Metatranscriptome Analysis megahit v. 0.2.0 No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 518522950 1456310 2524 1256 6350 7124 SRX2518358 Unrestricted 0.0 Metatranscriptome 3300002868 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Avena fatua rhizosphere microbial communities - H2_Bulk_Litter_10 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002868 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes mkfstone@berkeley.edu, nuccio1@llnl.gov; mkfstone@berkeley.edu Mary Firestone, Erin Nuccio; Mary Firestone No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.97364 -123.117453 7919134 22743 110 156 903 1131 SRX2558066 Unrestricted 0.0 Metatranscriptome 3300030636 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 28_T2E_3212KB8 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030636 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 57321744 86124 0 3 18 410 SRX4646391 Unrestricted 0.0 Metatranscriptome 3300008545 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - F3.FECAL.14dpc CCME-COLORADO 3300008545 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 9575246 36047 90 1 1123 15 0.0 Metatranscriptome 3300019029 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_036 - TARA_N000000313 (ERX1789463-ERR1719383) Canada's Michael Smith Genome Sciences Centre 3300019029 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 20.8215 63.512 543735962 1242668 3 50 34 339 0.0 Metatranscriptome 3300018826 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_124 - TARA_N000002037 (ERX1789587-ERR1719214) Canada's Michael Smith Genome Sciences Centre 3300018826 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -9.1504 -140.5216 181730372 448396 3 6 18 62 0.0 Metatranscriptome 3300017016 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Gulf of Mexico in GSe medium with ammonium, 22 C, 32 psu salinity and 498 ?mol photons light - Aureoumbra lagunensis CCMP 1510 (MMETSP0893) National Center for Genome Resources 3300017016 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Estuary marine 27.4708 -97.32 21490690 26974 4 1 7 2 0.0 Metatranscriptome 3300054672 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_CL_007R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300054672 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0518 10.4554 202979090 495743 642 575 2597 2700 Unrestricted 49.11 Metatranscriptome 3300037020 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Growout1_11 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037020 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 358260790 758222 759 70 1329 1141 SRX8821305 Unrestricted 20.84 Metatranscriptome 3300031592 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRA4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031592 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 59.9992 10.7901 47559579 82408 31 32 56 199 SRX5808067 Unrestricted 20.0 Metatranscriptome 3300031105 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031105 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 51657609 102153 73 30 76 269 SRX5352004 Unrestricted 24.86 Metatranscriptome 3300056994 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Frasne, France - Sphagnum magellanicum 3OTC_MAG_FR (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056994 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 289429719 632695 185 139 479 661 Unrestricted 45.71 Metatranscriptome 3300036287 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0817S02 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300036287 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0388 143608066 318047 421 937 6040 3047 SRX9140146, SRX9140145 Unrestricted 0.0 Metatranscriptome 3300009272 *Microbiome Permanent Draft Eukaryotic communities of water from Amazon river, Brazil and North Atlantic ocean Eukaryotic communities of water from the North Atlantic ocean - ACM45 University of Georgia 3300009272 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 196090901 589295 5 3 0 1 0.0 Metatranscriptome 3300046077 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-196 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046077 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4199 -64.1151 172505608 416599 460 27 873 409 Unrestricted 26.53 Metatranscriptome 3300016735 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071406BT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016735 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 336679862 751175 113 245 1422 3218 SRX3780774 Unrestricted 0.0 Metatranscriptome 3300012703 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA- GEODES074 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012703 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.041 -89.686 127636465 237868 44 82 1704 2969 SRX3010933 Unrestricted 0.0 Metatranscriptome 3300037765 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - F18JunD (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037765 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.423 16.6683 67747457 135907 52 394 408 1294 SRX9165018 Unrestricted 111.66 Metatranscriptome 3300036552 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen6, Rep 1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036552 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 78750444 108714 4 0 70 0 SRX8382084 Unrestricted 118.23 Metatranscriptome 3300010142 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_4_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010142 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 139165084 328915 68 666 5260 5371 Unrestricted 0.0 Metatranscriptome 3300017493 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Derwent River in Gse medium, 18 C, 35 psu salinity and 319 ?mol photons light - Alexandrium margalefii AMGDE01CS-322 (MMETSP0661) National Center for Genome Resources 3300017493 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Estuary marine 43.03333 147.36667 64935869 112558 151 27 256 29 SRX551350 0.0 Metatranscriptome 3300011314 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S15 Bottom_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011314 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 92198004 204605 46 83 2519 1564 SRX3787184 Unrestricted 0.0 Metatranscriptome 3300016871 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Arctic in K medium with Eastern Pacific seawater w/o silicate, 6 C, 35 psu salinity and 535 ?mol photons light - micromonas sp. CCMP2099 (MMETSP0802) National Center for Genome Resources 3300016871 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 76.2833 -74.75 21211067 16920 12 5 11 7 0.0 Metatranscriptome 3300016794 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in Standard Aquil medium with 100 uM EDTA, 12 C, 32 psu salinity and 600 ?mol photons light - Pseudo-nitzschia delicatissima UNC1205 (MMETSP1432) National Center for Genome Resources 3300016794 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 48.816 -128.666 18030849 19684 4 1 8 1 0.0 Metatranscriptome 3300030603 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO133-ANR017SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030603 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2719 -71.2088 643799280 1381142 102 152 2571 1421 SRX4010656 Unrestricted 0.0 Metatranscriptome 3300019161 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019161 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 49.044 13.617 14969023 32107 17 127 876 997 SRX3937289 Unrestricted 0.0 Metatranscriptome 3300003153 *Microbiome Permanent Draft Marine microbial communities from deep-sea hydrothermal vent plumes in the Guaymas Basin Marine microbial communities from deep-sea hydrothermal vent plumes in the Guaymas Basin 3300003153 Metatranscriptome Analysis MIRA v. April 2010 Made public because these are downloaded from Genbank No Yes gdick@umich.edu Gregory Dick Yes 22695860 Environmental Aquatic Hydrothermal vents Marine Unclassified Marine 132350460 337654 159 23 240 37 0.0 Metatranscriptome 3300048530 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81958dd8-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048530 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 129677332 324267 291 219 1927 1395 Unrestricted 29.62 Metatranscriptome 3300031498 *Microbiome Permanent Draft Soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - STER_R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031498 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thb15@psu.edu Terrence Bell No Engineered Artificial ecosystem Surface biofilm Soil microcosm Unclassified soil 40.7997 -77.8629 12580882 18251 8 0 30 15 SRX5811520 Unrestricted 381.1 Metatranscriptome 3300032168 *Microbiome Permanent Draft Rhizosphere microbial communities from salt marsh grasses in Alabama, United States Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032168 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes omason@fsu.edu Olivia Mason No Host-associated Plants Rhizosphere Roots Unclassified rhizosphere 30.2619 -88.2383 742969650 1656484 276 694 5379 2595 SRX5821838 Unrestricted 28.86 Metatranscriptome 3300036410 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Metatranscriptome of forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_16 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036410 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 156982819 376995 13 181 418 673 SRX8240609 Unrestricted 64.66 Metatranscriptome 3300008324 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - PM75.FECAL.14dpc CCME-COLORADO 3300008324 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 2833269 12169 37 2 838 6 0.0 Metatranscriptome 3300036583 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp03_R71 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036583 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 234217303 458742 323 98 721 1477 SRX8840604 Unrestricted 19.16 Metatranscriptome 3300042572 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Metatranscriptome of estuarine water microbial communities from San Francisco Bay, California, United States - Oct18_SB_2_27D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042572 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 37.6183 -122.2916 19814936 43366 85 107 220 749 Unrestricted 52.77 Metatranscriptome 3300030817 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T25 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030817 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 34901986 68765 111 99 154 457 SRX5794486 Unrestricted 19.42 Metatranscriptome 3300036458 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036458 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 59.9982 10.7894 97434267 183943 120 45 187 227 SRX8135103 Unrestricted 0.0 Metatranscriptome 3300043795 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA74a (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043795 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Unclassified Soil Unclassified soil 35.7877 -78.6442 33139132 74167 299 375 2363 2353 Unrestricted 48.71 Metatranscriptome 3300046438 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_43_Control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046438 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1484 -81.3585 8433010 19247 33 111 571 679 Unrestricted 39.62 Metatranscriptome 3300012775 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Montjoie, Canada - M_140625_M_mt (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012775 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.4091 -72.0994 184861741 395971 370 97 3510 8955 SRX3015268 Unrestricted 0.0 Metatranscriptome 3300036812 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp02_R37 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036812 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 224545896 487474 662 101 1316 1689 SRX8836637 Unrestricted 26.09 Metatranscriptome 3300016678 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES102 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016678 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.041 -89.686 28294355 56515 37 93 3329 1872 SRX3780040 Unrestricted 0.0 Metatranscriptome 3300019269 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019269 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 383253718 944112 131 948 1107 8043 SRX3939790 Unrestricted 0.0 Metatranscriptome 3300006373 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006373 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 109508119 322311 15407 8704 46183 29301 SRX3195873 Unrestricted 0.0 Metatranscriptome 3300043806 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_128 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043806 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 85117944 196744 151 294 1858 1565 Unrestricted 51.99 Metatranscriptome 3300008612 *Microbiome Permanent Draft Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France - CSM2012-AB-A-D Centre National de la Recherche Scientifique (CNRS) 3300008612 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Microbial mats Freshwater lake 5310466 12716 138 78 1481 838 SRX528308 0.0 Metatranscriptome 3300018788 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_065 - TARA_N000000933 (ERX1789381-ERR1719390) Canada's Michael Smith Genome Sciences Centre 3300018788 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -35.1728 26.2868 159964308 396586 17 15 62 422 0.0 Metatranscriptome 3300004552 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 91_HOW11 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004552 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 50413109 116292 88 10 349 18 SRX2725653 Unrestricted 0.0 Metatranscriptome 3300035605 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R1105U02 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300035605 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0387 30008985 60249 376 1118 3699 3845 SRX9140014, SRX9140015 Unrestricted 0.0 Metatranscriptome 3300003528 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS2_TP1_13H 3300003528 Metatranscriptome Analysis CLC genomics workbench 7.0 released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933251 -130.01379 3129687 8043 62 2 134 3 0.0 Metatranscriptome 3300034305 *Microbiome Permanent Draft Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S65 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034305 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes colin.averill@usys.ethz.ch Colin Averill No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 36.0 -78.0 22150855 32269 3 9 44 49 SRX7614870 Unrestricted 1228.29 Metatranscriptome 3300052757 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_56 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052757 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 213316531 529337 93 140 1363 913 Unrestricted 42.18 Metatranscriptome 3300019252 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_deep_8_15_core_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019252 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment wetland 41.3778 -82.5111 288802324 647440 673 328 32548 3379 Unrestricted 0.0 Metatranscriptome 3300004569 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 34_HOW6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004569 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 22472380 51808 183 359 683 910 SRX2779922 Unrestricted 0.0 Metatranscriptome 3300046104 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-108 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046104 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4426 -64.2061 70479866 161520 747 54 1230 878 Unrestricted 20.89 Metatranscriptome 3300017091 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in Aquil nutrients amended seawater with alpha-glycerophosphate, at 20 C, 35 psu salinity and 745 ?mol photons light - Emiliania huxleyi PLY M219 (MMETSP1150) National Center for Genome Resources 3300017091 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 33212273 42646 11 9 11 9 0.0 Metatranscriptome 3300004583 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 38_LOW7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004583 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 33921434 83745 160 17 601 44 SRX2779927 Unrestricted 0.0 Metatranscriptome 3300017178 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in filtered seawater, at 15 C, 29.4 psu salinity and 271 ?mol photons light - Oxyrrhis marina (MMETSP0470) National Center for Genome Resources 3300017178 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 36093443 49927 6 15 22 26 0.0 Metatranscriptome 3300030557 *Microbiome Permanent Draft Metatranscriptome of decayed wood fungal communities from Pinus contorta in National Forests from Montana, United States Metatranscriptome of decayed wood fungal communities from Pinus contorta in Tenderfoot Creek Experimental Forest, Montana, United States - TCEF2-2N (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030557 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes dcullen@wisc.edu Daniel Cullen No Host-associated Plants Stem Phyllosphere Wood decay decayed wood 46.9233 -110.8694 211861772 395753 28 2 65 20 SRX4804165 Unrestricted 0.0 Metatranscriptome 3300059646 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 42R_SW_T1_R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059646 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 170666758 427824 638 473 2620 2740 Unrestricted 84.0 Metatranscriptome 3300006937 *Microbiome Permanent Draft Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, for analyzing deforestation at different spatial scales Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A01 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300006937 Metatranscriptome Analysis megahit v. 0.2.0 No Yes nusslein@microbio.umass.edu Nusslein, Klaus, Klaus Nusslein No Environmental Terrestrial Tropical forest Soil Unclassified Tropical rainforest soil -10.0 -62.0 126794197 441450 23563 5635 98195 15545 SRX2566805 Unrestricted 0.0 Metatranscriptome 3300006596 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Leu_01_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006596 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 179678868 445403 343 218 1128 512 SRX3361121 Unrestricted 0.0 Metatranscriptome 3300022364 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.665 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022364 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.286 -124.052 21100635 62756 2 12 70 34 SRX4018421 Unrestricted 0.0 Metatranscriptome 3300027113 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0686-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300027113 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 222716175 393927 17 9 19 33 SRX5253748 Unrestricted 134.55 Metatranscriptome 3300055176 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP10.2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055176 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 215970822 416471 6 13 48 66 Unrestricted 44.44 Metatranscriptome 3300029699 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepB_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029699 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 196654865 413126 107 123 559 812 SRX5338611 Unrestricted 26.86 Metatranscriptome 3300049109 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 69 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049109 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.7385 -82.2743 24075030 34962 31 3 63 53 Restricted 49.75 Metatranscriptome 3300010899 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS6_30_TP1_12H Marine Biological Laboratory 3300010899 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 580354 2041 74 2 74 5 0.0 Metatranscriptome 3300049550 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I22_A_5_control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049550 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 46158413 112334 98 64 437 445 Unrestricted 243.92 Metatranscriptome 3300019283 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101404CT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019283 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 443904924 971343 173 270 2967 3389 SRX3920931 Unrestricted 0.0 Metatranscriptome 3300047604 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_7_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047604 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 27730170 51818 3 0 31 0 Restricted 289.66 Metatranscriptome 3300041500 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaT AgResearch, New Zealand, Mosgeil 3300041500 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Unclassified Roots Unclassified White clover root -43.648506 172.343549 15260021 26204 159 214 592 399 0.0 Metatranscriptome 3300017277 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in 495 ?mol photons light - Stygamoeba regulata BSH-02190019 (MMETSP0447) National Center for Genome Resources 3300017277 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh marine 37.26598 -76.38467 40035987 48777 29 11 58 13 0.0 Metatranscriptome 3300046440 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_46W_Control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046440 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1449 -81.3582 52747533 117006 110 155 957 820 Unrestricted 41.93 Metatranscriptome 3300061831 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 57_rapeseed_3_T5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061831 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 47314847 124565 125 107 938 888 Unrestricted 161.12 Metatranscriptome 3300042492 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_CL14+71_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042492 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 58753571 80338 0 0 1 1 Unrestricted 247.83 Metatranscriptome 3300018665 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - LD30M_ls2 J. Craig Venter Institute (JCVI) 3300018665 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 58.581234 18.232801 73541398 239004 72 19 147 198 0.0 Metatranscriptome 3300022527 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022527 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 261624536 616569 205 487 4632 3771 SRX4406381 Unrestricted 0.0 Metatranscriptome 3300023535 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 61R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023535 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 5441984 11929 21 3 302 184 SRX4475284 Unrestricted 94.0 Metatranscriptome 3300003696 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA - aqueous naphthalene treatment rep 2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003696 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.099444 -73.604444 19075876 61354 5 269 267 1721 SRX2552962, SRX2552961 Unrestricted 0.0 Metatranscriptome 3300024574 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_UVDOM_RepA_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024574 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 331222892 681799 90 149 1038 1790 SRX4547714 Unrestricted 17.93 Metatranscriptome 3300032027 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLE4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032027 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 49.0427 13.6161 14664619 31106 205 330 2408 1992 SRX5784749 Unrestricted 0.0 Metatranscriptome 3300004954 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI054_120m_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004954 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 17168782 59158 662 479 2968 2262 Unrestricted 0.0 Metatranscriptome 3300046199 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_6_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046199 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 36694666 68972 1 0 20 0 Restricted 172.86 Metatranscriptome 3300046216 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_4_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046216 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 65372215 119249 1 0 27 0 Restricted 223.92 Metatranscriptome 3300018690 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_072 - TARA_N000000839 (ERX1782228-ERR1712109) Canada's Michael Smith Genome Sciences Centre 3300018690 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.7484 -17.9179 123242404 279041 20 31 105 303 0.0 Metatranscriptome 3300021312 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States - R1072 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021312 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 46.232 -123.886 122459104 263454 183 318 2112 3862 SRX4015454 Unrestricted 0.0 Metatranscriptome 3300018591 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_124 - TARA_N000002039 (ERX1782350-ERR1711882) Canada's Michael Smith Genome Sciences Centre 3300018591 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -9.1504 -140.5216 31611497 105645 37 57 200 597 0.0 Metatranscriptome 3300008354 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy - t60.CR.RNAseq.exp1 University of Naples 3300008354 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Cheese 17689 56 8 0 36 0 0.0 Metatranscriptome 3300037018 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Growout1_05 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037018 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 476679440 985094 734 62 1322 1048 SRX8819569 Unrestricted 21.03 Metatranscriptome 3300007607 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_D4L_HD (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007607 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 93882372 305178 16852 5259 47711 11930 SRX5781218 Unrestricted 0.0 Metatranscriptome 3300028260 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0417-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028260 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 123037487 215377 15 9 8 75 SRX5250645 Unrestricted 118.0 Metatranscriptome 3300010425 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS5_30_TP1_12H Marine Biological Laboratory 3300010425 Metatranscriptome Analysis CLC genomics wb7 released per JGI data release policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933 -130.014 1743078 5121 133 6 237 17 0.0 Metatranscriptome 3300011035 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 23 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011035 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 22148473 52670 100 246 5395 1273 Unrestricted 0.0 Metatranscriptome 3300026384 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0896-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026384 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 43137802 79803 27 35 109 105 SRX4664276 Unrestricted 72.48 Metatranscriptome 3300053678 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T4_2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053678 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 58741465 123789 16 3 157 24 Unrestricted 384.27 Metatranscriptome 3300003737 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_80_13H Marine Biological Laboratory 3300003737 Metatranscriptome Analysis CLC Genomics WB7 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 818507 2075 33 0 78 0 0.0 Metatranscriptome 3300037050 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Growout1_10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037050 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 366793704 781619 737 57 1248 1070 SRX8820562 Unrestricted 22.26 Metatranscriptome 3300019059 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS694_0p1 J. Craig Venter Institute (JCVI) 3300019059 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 1913769 8016 1 6 66 238 0.0 Metatranscriptome 3300018856 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_009 - TARA_X000001006 (ERX1782473-ERR1712200) Canada's Michael Smith Genome Sciences Centre 3300018856 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.0856 5.7927 275823509 509224 1 11 9 157 0.0 Metatranscriptome 3300032636 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of cow rumen rumen associated fungal communities from Illinois, USA - Cow X-2 switchgrass (Eukaryote Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032636 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Cow rumen associated 40.102108 -88.227299 64052562 207444 90 38 238 76 SRX3338773 Unrestricted 0.0 Metatranscriptome 3300046761 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_99_Control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046761 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.2074 -81.3571 65787275 152201 364 291 1457 1471 Unrestricted 38.96 Metatranscriptome 3300049113 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 73 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049113 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.9364 -81.6542 1034270 1801 2 5 17 29 Restricted 623.88 Metatranscriptome 3300019062 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS669_0p8 J. Craig Venter Institute (JCVI) 3300019062 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 65.73045 22.445047 3366490 17314 6 2 251 325 0.0 Metatranscriptome 3300008793 *Microbiome Permanent Draft Microbial communities from freshwater in the western basin of Lake Erie, USA Microbial communities from freshwater in the western basin of Lake Erie, USA - 1163-2 University of Tennessee 3300008793 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.46 -82.71 10363816 22831 56 82 338 1082 0.0 Metatranscriptome 3300035586 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - 28D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035586 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.423 16.6683 80428896 161359 189 139 2969 669 SRX8209525 Unrestricted 67.75 Metatranscriptome 3300030941 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLA4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030941 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 59.9992 10.7901 31610466 69093 128 236 372 1128 SRX5351338 Unrestricted 0.0 Metatranscriptome 3300032589 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032589 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Unclassified Phyllosphere Unclassified phyllosphere 42.39 -85.37 350311610 645261 168 170 271 800 SRX7077715 Unrestricted 50.99 Metatranscriptome 3300010185 *Microbiome Permanent Draft Host-associated microbial communities from peat moss Sphagnum species from Minnesota, USA Peat moss associated microbial communities from Sphagnum species from Minnesota, USA - S1T2_Fa - Sphagnum fallax MT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010185 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes joel.kostka@biology.gatech.edu Joel Kostka No Host-associated Plants Unclassified Peat moss Unclassified Peat moss associated 47.5028 -93.4828 101643220 191545 127 255 1302 2765 SRX3007406 Unrestricted 0.0 Metatranscriptome 3300048959 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 43 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048959 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.7703 -82.3517 35355331 80068 119 30 293 176 Restricted 24.18 Metatranscriptome 3300031870 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLI1 metaT (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031870 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified Plant litter 49.043 13.6183 19915242 39935 65 393 420 2007 SRX5217016, SRX3936997 Unrestricted 0.0 Metatranscriptome 3300030527 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen10, Rep 2, Chloramphenicol (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030527 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 45233988 43720 3 1 170 5 SRX5087087, SRX5087088 Unrestricted 0.0 Metatranscriptome 3300008289 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34720 J. Craig Venter Institute (JCVI) 3300008289 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 245419 1167 0 0 6 1 0.0 Metatranscriptome 3300009334 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from the North Atlantic ocean - ACM46 University of Georgia 3300009334 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 33824844 102093 37 50 177 247 0.0 Metatranscriptome 3300003949 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS908_80_13H7 Marine Biological Laboratory 3300003949 Metatranscriptome Analysis CLC Genomics WB7 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 991617 2925 35 0 75 0 0.0 Metatranscriptome 3300012719 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES123 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012719 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 165237855 341940 73 121 643 3781 SRX3011052 Unrestricted 0.0 Metatranscriptome 3300048962 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 41+47 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048962 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.6659 -82.0791 31902947 74992 112 78 293 392 Restricted 25.66 Metatranscriptome 3300008567 *Microbiome Permanent Draft Acid mine drainage (AMD) microbial communities from Richmond mine in California, USA Acid mine drainage (AMD) microbial communities of acidophilic biofilm from Richmond mine in California, USA - A-drift University of California, Berkeley 3300008567 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes Yes 25361394 Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 762324 2763 36 8 142 16 SRX317224 0.0 Metatranscriptome 2209111012 *Microbiome Permanent Draft Lentic microbial communities from Grosse Fuchskuhle, Germany, for comparative metatranscriptomics 2000 evening metatranscriptome Leibniz Institute 2209111012 Metatranscriptome Analysis newbler released by JGI data releasing policy No Yes mallgaier@igb-berlin.de Martin Allgaier No Environmental Aquatic Lentic Freshwater Unclassified Lentic 53.1058 12.9847 8008326 19509 1929 0 5583 0 0.0 Metatranscriptome 3300037688 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Metatranscriptome of lab enriched marine microbial communities from Marineland, Florida, USA - SWP_R1_TP1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037688 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6475 -82.3464 157262137 333846 289 73 760 366 SRX9142536 Unrestricted 85.91 Metatranscriptome 3300016692 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES100 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016692 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 46.041 -89.686 101356108 188698 44 79 1320 2778 SRX3780037 Unrestricted 0.0 Metatranscriptome 3300055234 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP10.1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055234 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 129882143 258613 11 17 83 126 Unrestricted 33.46 Metatranscriptome 3300021299 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States - R1034 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021299 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 46.216 -123.951 71389595 151102 219 604 1882 5869 SRX4015379 Unrestricted 0.0 Metatranscriptome 3300047466 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 819586ee-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047466 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 366106724 917850 296 231 1716 1415 Unrestricted 20.59 Metatranscriptome 3300017918 *Microbiome Permanent Draft Microbial communities from hydrothermal vent in East Pacific Rise, Pacific Ocean Biofilm microbial communities from hydrothermal vent in East Pacific Rise, Pacific Ocean - CV88 Bigelow Laboratory for Ocean Sciences 3300017918 Metatranscriptome Analysis Spades released by JGI data releasing policy No Yes ashleygrosche@yahoo.com Ashley Grosche No Environmental Aquatic Hydrothermal vents Marine Microbial mats biofilm 9.84 -104.29 58046913 237369 13726 105 153317 1437 0.0 Metatranscriptome 3300017311 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in HESNW medium w/o silica, at 18 C, 30 psu salinity and 654 ?mol photons light - Protoceratium reticulatum CCCM 535 (MMETSP0228) National Center for Genome Resources 3300017311 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 67874301 99736 0 1 1 3 0.0 Metatranscriptome 3300003558 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from the University of North Carolina, USA - metaT NBMF1_10_fullP_mix1_d2 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003558 Metatranscriptome Analysis rnnotator v. 3.3.1 Reverted to private per Tijana Glavina del Rio (Oct 2014) No Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9082 -79.0499 48931636 70732 0 0 0 0 SRX2556652, SRX2556651 Unrestricted 0.0 Metatranscriptome 3300004522 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 45_HOW7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004522 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 9437956 21728 308 27 1494 97 SRX2780059 Unrestricted 0.0 Metatranscriptome 3300008045 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Puerto Morelos, Mexico - Orbicella 8 C B metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300008045 Metatranscriptome Analysis megahit v. 0.2.0 No Yes momedinamunoz@gmail.com Monica _ Medina, Medina Medina No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral host 20.8778 -86.8431 323523150 486804 98 151 337 876 SRX3362280 Unrestricted 0.0 Metatranscriptome 3300000560 *Microbiome Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active layer cDNA A2 Metatranscriptome DOE Joint Genome Institute (JGI) 3300000560 Metatranscriptome Analysis released by JGI data releasing policy No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 0 0 0 0 0 0 0.0 Metatranscriptome 3300003611 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA Grassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_27 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003611 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes pettridge2@llnl.gov, nuccio1@llnl.gov; pettridge2@llnl.gov Jennifer Pett-Ridge, Erin Nuccio; Jennifer Pett-Ridge No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.972988 -123.116539 17636963 50084 134 78 345 1076 SRX2563408 Unrestricted 0.0 Metatranscriptome 3300008876 *Microbiome Permanent Draft Microbial communities of Wadden Sea tidal flat in Germany Microbial communities of Wadden Sea tidal flat in Germany - 1650 earlyLowTide Bielefeld University 3300008876 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Tidal flat 53.73 7.67 26481292 84180 36 16 394 143 0.0 Metatranscriptome 3300051246 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Sankt Oswald-Riedlhutte, Bavaria, Germany - BW_CO_009R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051246 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.93167 13.427611 98734395 248637 212 208 1226 903 Unrestricted 55.04 Metatranscriptome 3300046291 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_5_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046291 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 147278860 215643 6 0 37 2 Restricted 129.42 Metatranscriptome 3300036188 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp03_R65_R66 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036188 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 131302745 283205 352 120 801 1537 SRX8839529 Unrestricted 23.57 Metatranscriptome 3300018516 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_078 - TARA_N000001516 (ERX1782107-ERR1711891) Canada's Michael Smith Genome Sciences Centre 3300018516 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -30.052 -43.2619 15452502 33541 0 32 1 88 0.0 Metatranscriptome 3300017192 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in K medium w/o silicate, at 23 C, 0 psu salinity and 288 ?mol photons light - Bigelowiella natans CCMP 623 (MMETSP1052) National Center for Genome Resources 3300017192 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39127719 52811 12 3 18 10 0.0 Metatranscriptome 3300019222 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNTR4_MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019222 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 34.65 135.05 157704117 329511 39 53 5250 543 SRX4809150 Unrestricted 0.0 Metatranscriptome 3300031139 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_D6_32mM_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031139 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 21573383 33245 4 0 3 3 SRX5783611 Unrestricted 21.87 Metatranscriptome 3300024851 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Miss_RepC_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024851 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 178270885 381600 52 221 1119 1472 SRX4547785 Unrestricted 26.95 Metatranscriptome 3300027020 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0437-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300027020 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 140493560 244901 11 4 6 39 SRX5251954 Unrestricted 168.44 Metatranscriptome 3300041695 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_46 MetaT AgResearch, New Zealand, Mosgeil 3300041695 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 47863291 107949 439 99 2579 167 0.0 Metatranscriptome 3300041427 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass leaf microbial community from Lincoln, Canterbury, New Zealand - RGL17_5 MetaT AgResearch, New Zealand, Mosgeil 3300041427 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 13751495 21583 98 50 334 165 0.0 Metatranscriptome 3300046308 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_5_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046308 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 29364575 43285 5 0 19 0 Restricted 234.55 Metatranscriptome 3300026569 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026569 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 288054660 583983 52 178 730 1418 SRX4797178 Unrestricted 19.65 Metatranscriptome 3300046577 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-57 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046577 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.433 -64.1161 132019377 311017 1115 45 1752 674 Unrestricted 15.98 Metatranscriptome 3300018950 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_068 - TARA_N000000711 (ERX1789413-ERR1719427) Canada's Michael Smith Genome Sciences Centre 3300018950 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -31.0292 4.6742 508525566 959951 1 35 5 149 0.0 Metatranscriptome 3300004613 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 25 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004613 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 116923961 406999 5652 3524 21256 7845 Unrestricted 0.0 Metatranscriptome 3300008553 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - F4.FECAL.14dpc CCME-COLORADO 3300008553 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 4261878 16354 50 1 841 18 0.0 Metatranscriptome 3300059629 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 186R_SW_T3_R4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059629 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 67832368 170641 314 238 998 1395 Unrestricted 68.64 Metatranscriptome 3300048946 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 23 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048946 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 42.2817 -81.6717 17598484 36634 7 3 37 23 Restricted 68.16 Metatranscriptome 3300021909 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Metatranscriptome of freshwater microbial communities from post-fracked creek in Pennsylvania, United States - NH:C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021909 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Unclassified freshwater 41.5933 -78.514 61557762 151041 85 1757 2742 10668 SRX4009979 Unrestricted 0.0 Metatranscriptome 3300018505 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_128 - TARA_N000002301 (ERX1782127-ERR1712175) Canada's Michael Smith Genome Sciences Centre 3300018505 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 0.0193 -153.7487 15470272 32331 0 7 0 52 0.0 Metatranscriptome 3300031092 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031092 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040645 -106.94847615 536795306 1256385 559 510 3054 2820 SRX8134994 Unrestricted 19.91 Metatranscriptome 3300012387 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_16_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012387 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 138165745 335351 106 763 6914 7032 Unrestricted 0.0 Metatranscriptome 3300017039 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Tyrrhenian Sea in natural sea water, 25 C, 38 psu salinity and 417 ?mol photons light - Moneuplotes crassus CT5 (MMETSP1380) National Center for Genome Resources 3300017039 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 19992979 37827 6 3 16 11 0.0 Metatranscriptome 3300043286 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - FS5.Jul19.R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043286 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.5326 -110.7972 8-9 65416106 130830 55 0 526 0 SRX10112689 Unrestricted 31.5 Metatranscriptome 3300036370 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen2, Rep 2, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036370 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 24565249 28920 0 0 3 1 SRX8380678, SRX8380679 Unrestricted 0.0 Metatranscriptome 3300046273 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_4_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046273 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 63928981 107077 1 0 19 2 Restricted 110.27 Metatranscriptome 3300014758 *Microbiome Permanent Draft Microbial communities from methanogenic microcosms from oil petroleum samples laboratory microbial enrichments from Reconcavo Basin petroleum reservoir, Newcastle Upon Tyne, UK, - cDNA 1 UNIVERSIDADE DE SAO PAULO 3300014758 Metatranscriptome Analysis METASPADES k=79 No Yes inatalia.sierra@gmail.com Isabel Natalia Sierra Garcia No Engineered Lab enrichment Anaerobic media Defined media Unclassified Laboratory microcosms 54.97825278 -1.61778056 42566 132 23 0 41 1 0.0 Metatranscriptome 3300011076 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 59 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011076 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 93582811 207637 141 245 13004 1677 Unrestricted 0.0 Metatranscriptome 3300008582 *Microbiome Permanent Draft Microbial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean Microbial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean - CTD-11-62 University of Michigan 3300008582 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vents 5065914 20386 1799 235 6819 821 0.0 Metatranscriptome 3300051259 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_89 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051259 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 2234749 5963 14 40 208 189 Unrestricted 447.85 Metatranscriptome 3300031204 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_L6_8mM_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031204 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 10064790 17925 7 0 2 4 SRX6408411 Unrestricted 46.84 Metatranscriptome 3300018751 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_078 - TARA_N000001514 (ERX1789607-ERR1719173) Canada's Michael Smith Genome Sciences Centre 3300018751 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -30.1506 -43.2877 173287560 335955 0 15 3 52 0.0 Metatranscriptome 3300026410 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepC_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026410 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 100606713 195547 45 89 134 407 SRX4547668 Unrestricted 31.12 Metatranscriptome 3300003674 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 77 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003674 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 8883854 26574 36 39 814 253 Unrestricted 0.0 Metatranscriptome 3300030802 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030802 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ake.olson@slu.se; francis.martin@inrae.fr Ake Olson; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 59545667 135212 10 5 7 19 SRX3344939 Unrestricted 0.0 Metatranscriptome 3300017374 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine algae-associated eukaryotic communities from Gulf of Mexico in L1 medium with seawater, 25 C, 35 psu salinity and 575 ?mol photons light - Karenia brevis SP1 (MMETSP0573) National Center for Genome Resources 3300017374 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Algae Unclassified Unclassified Unclassified marine algae-associated 102223238 143634 1 3 2 2 0.0 Metatranscriptome 3300037747 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of photosynthetic mat microbial communities from Octopus Spring, YNP, Wyoming, United States - 20090729 1915 sample t4cd (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037747 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 125467249 299059 0 0 78 0 SRX9381212 Unrestricted 161.91 Metatranscriptome 3300034681 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034681 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.920406 -106.94828662 154772846 363237 521 276 2220 1437 SRX8239469 Unrestricted 17.26 Metatranscriptome 3300028337 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 38R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028337 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 163279710 296378 116 19 164 294 SRX5112345 Unrestricted 31.42 Metatranscriptome 3300036121 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of sediment microbial communities from Prado wetlands, California, USA - CSM_Prado_Oct18_PM2_0.5z2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036121 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 123158831 243903 93 236 518 998 SRX8742650 Unrestricted 26.74 Metatranscriptome 3300061804 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 25_sorghum_2_T21 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061804 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 11294881 29222 37 41 345 403 Unrestricted 586.01 Metatranscriptome 3300026458 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 36R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026458 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 187514157 389771 240 39 365 634 SRX4783588 Unrestricted 21.02 Metatranscriptome 3300037828 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - F18JunF (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037828 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4202 16.665 154679069 327860 161 791 1207 2804 SRX9165016 Unrestricted 27.11 Metatranscriptome 3300007181 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_B5L_H (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007181 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 58696600 201582 9626 3099 22994 7594 SRX2522142 Unrestricted 0.0 Metatranscriptome 3300051609 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 72_100_16 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051609 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 77178599 201538 223 262 1767 1595 Unrestricted 90.59 Metatranscriptome 3300019087 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_025 - TARA_A100000402 (ERX1782238-ERR1711947) Canada's Michael Smith Genome Sciences Centre 3300019087 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.2143 19.406 30914815 61970 0 13 1 108 0.0 Metatranscriptome 3300034011 *Microbiome Permanent Draft FORHOT Natural soil warming experiment in Iceland Soil microbial communities from grassland in Hveragerdi, Iceland - GN4-A University of Vienna 3300034011 Metatranscriptome Analysis rnaSPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes craig.herbold@microbial-ecology.net Craig Herbold No Environmental Terrestrial Unclassified Soil Grasslands Soil 64.025 -21.205 515570964 1782482 61660 4183 231536 12849 0.0 Metatranscriptome 3300018573 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from upper and lower halo cline of Thetis Basin, Eastern Mediterranean Sea Metatranscriptome of marine microbial communities from upper halo cline of Thetis Basin, Eastern Mediterranean Sea - 18_2 Woods Hole Oceanographic Institution 3300018573 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 34.4 22.08 29899903 73103 1869 221 4335 450 0.0 Metatranscriptome 3300016952 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Sargasso Sea in ESM medium, 20 C, 35 psu salinity and 711 ?mol photons light - Gymnochlora sp. CCMP2014 (MMETSP0110_2) National Center for Genome Resources 3300016952 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 24.6019 64.9177 24098979 23311 1 5 3 9 0.0 Metatranscriptome 3300008894 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of boa constrictors from Steinhart Aquarium in San Francisco, USA - CAS07_GI University of California, San Francisco 3300008894 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Unclassified Digestive system Unclassified GI 1444776 4453 0 0 0 0 SRX170641 0.0 Metatranscriptome 3300028109 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 41R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028109 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 282747170 554971 180 38 229 408 SRX5172111 Unrestricted 24.87 Metatranscriptome 3300048699 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Metatranscriptome of beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - B2_CE1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048699 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.2552 -122.5085 114106085 226742 2 9 113 37 Restricted 69.33 Metatranscriptome 3300008813 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of boa constrictors from Steinhart Aquarium in San Francisco, USA - CAS07_Kidney University of California, San Francisco 3300008813 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Kidney Urinary system Unclassified Kidney 1929262 5668 0 0 0 0 SRX170628 0.0 Metatranscriptome 3300042537 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_255 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042537 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 141241837 327549 203 353 2245 1657 Unrestricted 47.64 Metatranscriptome 3300016969 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Antarctica in marine media K with soil extract, 1 C, 36 psu salinity and 392 ?mol photons light - Mantoniella antarctica SL-175 (MMETSP1106) National Center for Genome Resources 3300016969 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 30439764 33095 3 1 2 1 0.0 Metatranscriptome 3300029838 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Met1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029838 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 42987975 80618 15 12 390 66 SRX5356185 Unrestricted 152.17 Metatranscriptome 3300008835 *Microbiome Permanent Draft Eukaryotic communities of water from Amazon river, Brazil and North Atlantic ocean Eukaryotic communities of water from the North Atlantic ocean - ACM44 University of Georgia 3300008835 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 292705186 845479 1 1 7 3 0.0 Metatranscriptome 3300016983 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in modified f/2 medium with seawater, 3 C, 33.6 psu salinity and 118 ?mol photons light - Corethron pennatum L29A3 (MMETSP0169) National Center for Genome Resources 3300016983 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -47.33333 -15.65 28759913 33887 2 1 7 1 0.0 Metatranscriptome 3300004121 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF109 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004121 Metatranscriptome Analysis megahit v. 0.2.0 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.531427 -72.189946 275894391 868190 258 400 688 2568 SRX2013854 Unrestricted 0.0 Metatranscriptome 3300048702 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Metatranscriptome of beaver colon microbial communities from Maple Ridge, British Columbia, Canada - B2_PC1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048702 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Unclassified colon 49.2552 -122.5085 163745384 321625 1 5 151 41 Restricted 57.42 Metatranscriptome 3300006580 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006580 Metatranscriptome Analysis megahit v. 0.2.0 No Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil 45.54 -73.72 1041300589 3605060 193 196 445 519 SRX2521909 Unrestricted 0.0 Metatranscriptome 3300054637 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_CO_034R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300054637 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0698 10.43033 266186196 684108 850 629 3137 2864 Unrestricted 48.17 Metatranscriptome 3300006681 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP1139 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006681 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -29.3915 92.5909 35678407 104523 1579 1484 3619 2860 SRX3325549 Unrestricted 0.0 Metatranscriptome 3300008771 *Microbiome Permanent Draft Microbial communities of mouse gut induced with colitis from Vienna, Austria Microbial communities of mouse gut induced with colitis from Vienna, Austria - 9974_ATCGT University of Vienna 3300008771 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Stomach Digestive system Forestomach Foregut of mice 19711152 66165 193 2 1878 51 SRX326440 0.0 Metatranscriptome 3300021884 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S25 C1 B22 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021884 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 58.000163 -16.520083 45243995 121777 123 79 274 300 SRX5204623 Unrestricted 0.0 Metatranscriptome 3300046032 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046032 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4161 -64.8992 38841311 92437 474 31 857 303 Unrestricted 19.26 Metatranscriptome 3300046205 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_1_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046205 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 36549246 64499 1 0 21 0 Restricted 228.01 Metatranscriptome 3300017591 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine sediment eukaryotic communities from Great South Bay, New York in ATCC medium 790BY, 23 C, 25 psu salinity and 174 ?mol photons light - Aplanochytrium stocchinoi GSBS06 (MMETSP1346) (SRX549058-SRR1294444) National Center for Genome Resources 3300017591 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Sediment marine sediment 40.7 -73.1 6080119 9273 0 1 0 2 0.0 Metatranscriptome 3300018849 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_128 - TARA_N000002287 (ERX1789411-ERR1719439) Canada's Michael Smith Genome Sciences Centre 3300018849 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine 0.0222 -153.6858 187680660 511102 9 44 58 369 0.0 Metatranscriptome 3300019046 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_011 - TARA_X100000009 (ERX1408503-ERR1336911) Canada's Michael Smith Genome Sciences Centre 3300019046 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 41.6686 2.7996 356916566 1479420 116 99 363 888 0.0 Metatranscriptome 3300009908 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 6, Depth 6m; RNA IDBA-UD Marine Biological Laboratory 3300009908 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 9826234 26880 1024 314 3826 1329 0.0 Metatranscriptome 3300030983 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T33 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030983 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 26361734 49240 48 16 126 127 SRX5352841 Unrestricted 16.72 Metatranscriptome 3300008357 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy - t20.CR.B.RNAseq.exp2 University of Naples 3300008357 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Cheese 1670619 3150 31 0 125 39 0.0 Metatranscriptome 3300032713 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Plim5_22May_sur (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032713 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 894231710 1530018 12 6 12 145 SRX5801501 Unrestricted 16.32 Metatranscriptome 3300018766 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_036 - TARA_N000000317 (ERX1789428-ERR1719465) Canada's Michael Smith Genome Sciences Centre 3300018766 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 20.8222 63.5133 144703219 367093 37 23 58 256 0.0 Metatranscriptome 3300031663 *Microbiome Permanent Draft Hardwood forest soil microbial communities from various locations in the United States Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031663 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jdraff@indiana.edu Jonathan Raff No Environmental Terrestrial Temperate forest Soil Bulk soil hardwood forest soil 39.0844 -86.4705 37236031 86138 5 135 50 849 SRX5649115 Unrestricted 0.0 Metatranscriptome 3300004957 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI054_10m_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004957 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 14231436 49817 587 649 1776 3814 Unrestricted 0.0 Metatranscriptome 3300021859 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States - S.306 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021859 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.178 -123.853 575084341 1397712 147 1088 2043 3956 SRX4016157 Unrestricted 0.0 Metatranscriptome 3300029835 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Ser2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029835 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 45295946 87549 6 12 193 58 SRX5356125 Unrestricted 76.05 Metatranscriptome 3300018800 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_102 - TARA_N000001650 (ERX1789422-ERR1719172) Canada's Michael Smith Genome Sciences Centre 3300018800 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -5.2529 -85.1545 163944660 413465 7 9 13 80 0.0 Metatranscriptome 3300052411 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 24_50_4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052411 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 216338638 536872 327 258 2222 1661 Unrestricted 29.01 Metatranscriptome 3300033540 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_18SEP2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300033540 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3951 -85.3736 136925071 252741 141 134 321 729 SRX7519905 Unrestricted 28.87 Metatranscriptome 3300025733 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepB_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300025733 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 13478567 28734 20 35 65 196 SRX4547667 Unrestricted 17.47 Metatranscriptome 3300032426 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day2_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032426 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 13794000 26184 15 0 71 0 SRX6856344 Unrestricted 33.86 Metatranscriptome 3300021862 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-4 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021862 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 26.04908 -17.4582 12345813 30867 85 82 219 328 SRX6381189 Unrestricted 0.0 Metatranscriptome 3300012410 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012410 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 257101610 621286 59 516 6828 5589 Unrestricted 0.0 Metatranscriptome 3300017274 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, low N, at 18 C, 32 psu salinity and 229 ?mol photons light - Prorocentrum minimum CCMP 1329 (MMETSP0055) National Center for Genome Resources 3300017274 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 56882062 84426 0 1 0 5 0.0 Metatranscriptome 3300005629 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling - Hofmockel_1000060-3 ISU MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005629 Metatranscriptome Analysis megahit v. 0.2.0 No Yes khof@iastate.edu, kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Agricultural land Soil Unclassified Enriched soil aggregate 42.0266187 -93.6486594 25026936 68928 151 87 1048 180 SRX3195288 Unrestricted 0.0 Metatranscriptome 3300046208 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_2_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046208 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 44441289 70472 2 0 18 0 Restricted 139.75 Metatranscriptome 3300046596 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - G2-R2-B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046596 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3569 19.0504 172056106 380489 147 146 465 441 Unrestricted 31.29 Metatranscriptome 3300030952 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E4_Q_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030952 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 661087385 2256845 464 430 925 1163 SRX3341203 Unrestricted 0.0 Metatranscriptome 3300008929 *Microbiome Permanent Draft Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica - 1A J. Craig Venter Institute (JCVI) 3300008929 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ice edge, McMurdo Sound, Antarctica -77.36 164.28 172617343 480338 43 6 90 77 0.0 Metatranscriptome 3300024866 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepB_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024866 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 290822244 608127 96 121 941 1636 SRX4547753 Unrestricted 17.58 Metatranscriptome 3300008838 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_3046 Massachusetts Institute of Technology 3300008838 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 3206001 10692 8 3 278 711 0.0 Metatranscriptome 3300003734 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003734 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 36486380 68955 305 543 812 1286 SRX2568628 Unrestricted 0.0 Metatranscriptome 3300026387 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 44R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026387 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 43363692 86304 109 13 136 291 SRX4795993 Unrestricted 39.29 Metatranscriptome 3300030969 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 Emin (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030969 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7585 6.3578 720237929 2139360 16479 1185 29112 3816 SRX3351290 Unrestricted 0.0 Metatranscriptome 3300007604 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S14 DCM1_A metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007604 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 91985644 292952 3618 2318 8398 7713 SRX3787139 Unrestricted 0.0 Metatranscriptome 3300046080 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-200 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046080 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4199 -64.1151 137034511 313652 472 26 942 372 Unrestricted 24.95 Metatranscriptome 3300010083 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_4_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010083 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 45457502 105827 150 632 10581 5845 Unrestricted 0.0 Metatranscriptome 3300031019 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T31 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031019 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 52425790 97677 52 33 76 218 SRX5794688 Unrestricted 21.65 Metatranscriptome 3300046610 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-96 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046610 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4402 -64.1748 88492799 201740 832 33 1478 535 Unrestricted 14.65 Metatranscriptome 3300018508 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_100 - TARA_N000001642 (ERX1782381-ERR1712104) Canada's Michael Smith Genome Sciences Centre 3300018508 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -12.9794 -96.0232 519433 1369 1 0 6 12 0.0 Metatranscriptome 3300032147 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen2, Rep 3, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome) (version 3) DOE Joint Genome Institute (JGI) 3300032147 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 27487549 29130 0 0 0 1 SRX5359800, SRX5359799 Unrestricted 0.0 Metatranscriptome 3300055301 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP4.3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055301 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 98512659 210374 41 56 319 307 Unrestricted 163.43 Metatranscriptome 3300008564 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-33 University of Hawaii 3300008564 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 612292 1010 4 0 132 28 0.0 Metatranscriptome 3300003290 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_30 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003290 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes pettridge2@llnl.gov, nuccio1@llnl.gov; pettridge2@llnl.gov Jennifer Pett-Ridge, Erin Nuccio; Jennifer Pett-Ridge No Environmental Terrestrial Grasslands Soil Bulk soil Avena fatua rhizosphere 38.972988 -123.116539 8126926 23615 71 50 376 724 SRX2562549 Unrestricted 0.0 Metatranscriptome 3300016802 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, no silica, at 16 C, 34 psu salinity and 509 ?mol photons light - Pavlova sp. CCMP459 (MMETSP1139) National Center for Genome Resources 3300016802 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 18784206 21249 2 5 1 7 0.0 Metatranscriptome 3300048053 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P35SSC1_190914_i (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048053 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 10822255 25787 16 84 295 350 SRX20650732 Unrestricted 124.53 Metatranscriptome 3300043820 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_129 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043820 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 68299466 156211 112 191 3143 966 Unrestricted 45.72 Metatranscriptome 3300009337 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from Amazon river, Brazil - RCM17 University of Georgia 3300009337 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic River Freshwater Unclassified River water 34079647 111585 28 52 123 77 SRX863242 0.0 Metatranscriptome 3300010121 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_16_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010121 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 75077539 178354 118 635 14303 5874 Unrestricted 0.0 Metatranscriptome 3300009858 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 3, 8m depth; RNA IDBA-UD Marine Biological Laboratory 3300009858 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 6.55 6285006 14983 373 74 2280 143 0.0 Metatranscriptome 3300045473 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P26SSC2_191112_i (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300045473 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 50114971 128610 69 204 1656 962 SRX20650856 Unrestricted 188.86 Metatranscriptome 3300004638 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI048_135m_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004638 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 79800389 221200 1306 313 4201 997 Unrestricted 0.0 Metatranscriptome 3300059571 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_28 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300059571 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 132889235 224895 229 26 631 185 Unrestricted 84.42 Metatranscriptome 3300050371 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T4_4 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050371 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 243660449 398347 23 18 110 75 Unrestricted 71.76 Metatranscriptome 3300059670 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_10 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059670 Metatranscriptome Analysis megahit v. 2021-11-18 17:27:30 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 268875798 622890 337 98 1054 473 Unrestricted 0.0 Metatranscriptome 3300042501 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_36E_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042501 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 50342899 68855 0 0 0 0 Unrestricted 288.62 Metatranscriptome 3300010069 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_0_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010069 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 22315818 48912 106 612 12820 4642 Unrestricted 0.0 Metatranscriptome 3300037579 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen2, Rep 1, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037579 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 62797696 62710 3 0 8 2 SRX8380697, SRX8380698 Unrestricted 0.0 Metatranscriptome 3300021940 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-149 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021940 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 157704906 283903 36 51 88 177 SRX5203758 Unrestricted 0.0 Metatranscriptome 3300016740 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041413YT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016740 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 243894006 535361 114 230 853 3443 SRX3781480 Unrestricted 0.0 Metatranscriptome 3300003701 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_150m_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003701 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 58024383 130764 121 79 592 867 Unrestricted 0.0 Metatranscriptome 3300012384 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_24_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012384 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 131718886 318707 85 606 4294 5836 Unrestricted 0.0 Metatranscriptome 3300018861 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_152 - TARA_N000002482 (ERX1789410-ERR1719398) Canada's Michael Smith Genome Sciences Centre 3300018861 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine 43.7056 -16.8794 229978310 533980 14 22 44 289 0.0 Metatranscriptome 3300028079 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Yuk_RepB_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028079 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 97624726 193520 80 103 414 626 SRX5245753 Unrestricted 22.34 Metatranscriptome 3300037685 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Metataranscriptome of bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_017 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037685 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -19.6574 146.8351 562124847 1213862 4 76 124 371 SRX9161812 Unrestricted 13.43 Metatranscriptome 3300011302 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S23 Surf_B metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011302 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 64401218 150686 150 66 1052 1683 SRX2524378 Unrestricted 0.0 Metatranscriptome 3300003148 *Microbiome Permanent Draft Marine microbial communities of a harmful algal bloom from Baltimore Inner Harbor Algal bloom microbial communities from Baltimore Inner Harbor, Chesapeake Bay University of Maryland 3300003148 Metatranscriptome Analysis Trinity 2012-06-08 Made public because these are downloaded from Genbank No Yes delwiche@umd.edu Delwiche,C.F No Environmental Aquatic Intertidal zone Marine Estuary Marine 39.283 -76.611 136252266 188282 1 2 3 6 0.0 Metatranscriptome 3300050576 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae culture inoculated with mixed bacterial community from LLNL, Livermore, California, USA - f9_d2_A_S17 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050576 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 39324970 55455 2 0 4 8 Restricted 253.45 Metatranscriptome 3300030709 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from Antarctic Ocean - PS103-17 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030709 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified marine -69.4046 -0.0533 1406486906 2287913 24 3 29 91 SRX5356529 Unrestricted 0.0 Metatranscriptome 3300010188 *Microbiome Permanent Draft Host-associated microbial communities from peat moss Sphagnum species from Minnesota, USA Peat moss associated microbial communities from Sphagnum species from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010188 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes joel.kostka@biology.gatech.edu Joel Kostka No Host-associated Plants Unclassified Peat moss Unclassified Peat moss associated 47.5028 -93.4828 119762743 216767 342 798 3682 5258 SRX3007405 Unrestricted 0.0 Metatranscriptome 3300046574 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-48 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046574 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4354 -64.1145 89358531 215292 810 29 1226 469 Unrestricted 15.67 Metatranscriptome 3300031503 *Microbiome Permanent Draft Soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_N_R5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031503 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thb15@psu.edu Terrence Bell No Engineered Artificial ecosystem Surface biofilm Soil microcosm Unclassified soil 40.7997 -77.8629 18327821 33517 81 43 694 439 SRX5811923 Unrestricted 129.42 Metatranscriptome 3300041424 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass leaf microbial community from Lincoln, Canterbury, New Zealand - RGL17_3 MetaT AgResearch, New Zealand, Mosgeil 3300041424 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 10072920 16768 155 150 506 366 0.0 Metatranscriptome 3300061807 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 87_rapeseed_3_T21 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061807 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 30766788 77871 61 61 614 520 Unrestricted 321.8 Metatranscriptome 3300019126 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_022 - TARA_A100000695 (ERX1782402-ERR1712043) Canada's Michael Smith Genome Sciences Centre 3300019126 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.8661 17.3868 216966765 472039 12 28 57 205 0.0 Metatranscriptome 3300028334 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 68R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028334 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 94767462 205501 253 35 360 643 SRX5112371 Unrestricted 21.02 Metatranscriptome 3300016941 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Terra Nova Bay in natural sea water, 18 C, 35 psu salinity and 265 ?mol photons light - Euplotes focardii TN1 (MMETSP0206) National Center for Genome Resources 3300016941 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 11851335 22942 15 16 23 18 0.0 Metatranscriptome 3300017119 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater and 400nM iron, 10.6uM silica, 19 C, 35 psu salinity and 650 ?mol photons light - Thalassiosira weissflogii CCMP 1010 (MMETSP1408) National Center for Genome Resources 3300017119 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.0 -65.0 32416642 32582 3 1 4 1 0.0 Metatranscriptome 3300037744 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of photosynthetic mat microbial communities from Mushroom Spring, YNP, Wyoming, United States - 20090730 0000 sample R6cd (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037744 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 65273799 134296 3 0 67 0 SRX9378917 Unrestricted 179.22 Metatranscriptome 3300017377 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, low P, at 24 C, 32 psu salinity and 234 ?mol photons light - Alexandrium monilatum CCMP 3105 (MMETSP0096) National Center for Genome Resources 3300017377 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 70491880 92752 18 1 20 1 0.0 Metatranscriptome 3300031829 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic - CSE4 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031829 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 49.0427 13.6161 19128670 44306 172 125 1986 687 SRX5243316, SRX4455245 Unrestricted 0.0 Metatranscriptome 3300017296 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 24 C, 32 psu salinity and 605 ?mol photons light - Alexandrium monilatum CCMP 3105 (MMETSP0093) National Center for Genome Resources 3300017296 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 68227282 94684 17 1 18 1 0.0 Metatranscriptome 3300017508 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Baltic Sea in f/2 medium with sea water w/o silica, 3 C, 30 psu salinity and 302 ?mol photons light - Scrippsiella Hangoei SHTV-5 (MMETSP0361) National Center for Genome Resources 3300017508 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 59.51 23.13 106054104 132181 2 7 3 6 0.0 Metatranscriptome 3300059514 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 106R_AW_T2_R4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059514 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 78671586 193147 269 230 1144 1405 Unrestricted 50.51 Metatranscriptome 3300003677 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_66_BLW_10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003677 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 16057799 43708 89 23 207 488 SRX2570591 Unrestricted 0.0 Metatranscriptome 3300003555 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_17_M020 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003555 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 26692968 67221 268 38 732 957 SRX2518433 Unrestricted 0.0 Metatranscriptome 3300031207 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_D6_16mM_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031207 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 22706713 34676 2 0 1 7 SRX5783608 Unrestricted 45.39 Metatranscriptome 3300048984 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 81 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048984 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.9364 -81.6542 12966191 25125 21 4 49 39 Restricted 38.26 Metatranscriptome 3300022709 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022709 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 170848978 414084 121 456 3167 3556 SRX4408096 Unrestricted 0.0 Metatranscriptome 3300018742 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_022 - TARA_A100000534 (ERX1789653-ERR1719224) Canada's Michael Smith Genome Sciences Centre 3300018742 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.8386 17.4155 130907631 344678 6 10 9 96 0.0 Metatranscriptome 3300000656 *Microbiome Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Thermokarst Bog cDNA B3 Metatranscriptome DOE Joint Genome Institute (JGI) 3300000656 Metatranscriptome Analysis No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 0 0 0 0 0 0 0.0 Metatranscriptome 3300017211 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in f/2 medium with seawater, 14 C, 36 psu salinity and 378 ?mol photons light - Ditylum brightwellii GSO104 (MMETSP1010) National Center for Genome Resources 3300017211 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 41.325 -70.57 28406662 36809 11 9 17 14 0.0 Metatranscriptome 3300052474 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 10-S25Day63 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052474 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 224472741 470181 55 10 175 69 Unrestricted 44.75 Metatranscriptome 3300046112 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-219 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046112 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4604 -64.2162 190715510 446259 557 37 1118 649 Unrestricted 18.05 Metatranscriptome 3300037033 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp02_R43 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037033 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 352066805 699879 615 89 1145 1579 SRX8837895 Unrestricted 17.18 Metatranscriptome 3300008897 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of annulated tree boas from Steinhart Aquarium in San Francisco, USA - CAS02_Heart University of California, San Francisco 3300008897 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Heart Circulatory system Unclassified Heart 3092381 9053 0 0 0 0 SRX170642 0.0 Metatranscriptome 3300009916 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 6, 12m depth; RNA IDBA-UD Marine Biological Laboratory 3300009916 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 6.94 14271346 40764 2828 94 16616 263 0.0 Metatranscriptome 3300019084 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_083 - TARA_N000001374 (ERX1809751-ERR1740125) Canada's Michael Smith Genome Sciences Centre 3300019084 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -54.3739 -65.1342 28255551 73467 15 10 32 68 0.0 Metatranscriptome 3300004963 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004963 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 50523687 170198 3401 1278 11796 2702 Unrestricted 0.0 Metatranscriptome 3300042419 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_370_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042419 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 39751607 47721 1 0 10 1 Unrestricted 276.23 Metatranscriptome 3300018668 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_135 - TARA_N000002464 (ERX1782441-ERR1712149) Canada's Michael Smith Genome Sciences Centre 3300018668 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 32.9986 -121.7698 107759043 242490 55 27 247 412 0.0 Metatranscriptome 3300009295 *Microbiome Permanent Draft Microbial communities of wastewater sludge from Singapore Microbial communities of wastewater sludge from Singapore - Sludge5_b2_February Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300009295 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified Wastewater sludge 1.2 103.45 939656010 3572944 7031 1336 51422 4662 SRX373539 0.0 Metatranscriptome 3300021846 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.591 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021846 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.302 -123.036 40099706 88724 352 1537 4653 6576 SRX4018008 Unrestricted 0.0 Metatranscriptome 3300048523 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_7_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048523 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 17854652 34107 1 1 25 1 Restricted 316.95 Metatranscriptome 3300008389 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34706 J. Craig Venter Institute (JCVI) 3300008389 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 11754 25 0 0 2 0 0.0 Metatranscriptome 3300041549 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_400 MetaT AgResearch, New Zealand, Mosgeil 3300041549 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 42421916 86236 140 52 954 133 0.0 Metatranscriptome 3300041711 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_129 MetaT AgResearch, New Zealand, Mosgeil 3300041711 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 25329491 52781 55 31 466 114 0.0 Metatranscriptome 3300021887 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-132M (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021887 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 82834484 165043 31 43 67 123 SRX5203262 Unrestricted 0.0 Metatranscriptome 3300037015 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Growout1_01 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037015 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 428163840 903753 657 46 1251 1027 SRX8818263 Unrestricted 21.0 Metatranscriptome 3300011106 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011106 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil 45.54 -73.72 339348296 898951 0 3 97 7 SRX2522013, SRX2522012 Unrestricted 0.0 Metatranscriptome 3300054634 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_TH_022R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300054634 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0576 10.44543 259397528 645978 870 557 2944 2902 Unrestricted 42.42 Metatranscriptome 3300034643 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034643 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92039953 -106.94828697 261866582 609227 74 77 1851 679 SRX8239356 Unrestricted 22.52 Metatranscriptome 3300011038 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 28 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011038 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 22241558 54437 98 181 6932 930 Unrestricted 0.0 Metatranscriptome 3300035343 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0817M20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035343 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0387 34993420 74672 182 291 5022 1126 SRX8237167 Unrestricted 49.76 Metatranscriptome 3300053675 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T2_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053675 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 78019432 150561 27 6 166 32 Unrestricted 0.0 Metatranscriptome 3300018763 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_040 - TARA_N000000064 (ERX1782288-ERR1711868) Canada's Michael Smith Genome Sciences Centre 3300018763 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 17.4825 67.9869 166488162 365284 43 26 260 417 0.0 Metatranscriptome 3300046297 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_6_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046297 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 79000462 131669 2 0 28 0 Restricted 126.12 Metatranscriptome 3300012720 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES141 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012720 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 170465764 351615 132 225 1156 4124 SRX3011205 Unrestricted 0.0 Metatranscriptome 3300030986 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_143 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030986 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92045766 -106.94845279 35414697 80594 520 392 3037 2301 SRX8133090 Unrestricted 32.3 Metatranscriptome 3300009722 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from Louisiana Shelf, Gulf of Mexico - GoM_2015_C6C_241_18m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009722 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 28.8679 -90.4764 9088110 19852 102 88 5264 1517 Unrestricted 0.0 Metatranscriptome 3300049108 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 68 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049108 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.6663 -82.0816 22464940 34043 33 21 72 132 Restricted 49.12 Metatranscriptome 3300010898 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS906_80_TP1_12H Marine Biological Laboratory 3300010898 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 523868 1818 18 0 50 1 0.0 Metatranscriptome 3300031666 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRI6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031666 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 59.997 10.7902 31683479 44956 7 4 12 28 SRX5807949 Unrestricted 26.29 Metatranscriptome 3300041582 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_495 MetaT AgResearch, New Zealand, Mosgeil 3300041582 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 54764375 119868 315 78 2524 191 0.0 Metatranscriptome 3300017179 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Irish Sea in f/2 medium with seawater, 21 C, 33 psu salinity and 136 ?mol photons light - Isochrysis galbana CCMP 1323 (MMETSP0944) National Center for Genome Resources 3300017179 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 54.085 -4.77 30934450 34784 111 10 188 30 0.0 Metatranscriptome 3300017317 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 24 C, 32 psu salinity and 647 ?mol photons light - Alexandrium monilatum CCMP 3105 (MMETSP0097) National Center for Genome Resources 3300017317 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 81353791 102656 12 3 22 2 0.0 Metatranscriptome 3300059574 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_26 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300059574 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 155091836 261107 233 43 697 271 Unrestricted 96.69 Metatranscriptome 3300008342 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy - t30.CR.A.RNAseq.exp2 University of Naples 3300008342 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Cheese 2089146 4006 22 1 110 38 0.0 Metatranscriptome 3300032423 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day2_7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032423 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 60261502 96280 4 1 25 2 SRX6857172 Unrestricted 114.91 Metatranscriptome 3300049627 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Metatranscriptome of beaver colon microbial communities from Maple Ridge, British Columbia, Canada - B3_PC2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049627 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Unclassified colon 49.2552 -122.5085 74056177 149737 1 3 67 25 Restricted 26.25 Metatranscriptome 3300055304 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP6.1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055304 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 92542853 203740 17 27 140 185 Unrestricted 183.22 Metatranscriptome 3300031855 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen2, Rep 3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031855 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 20551148 39688 10 0 77 4 SRX5359149 Unrestricted 21.72 Metatranscriptome 3300004568 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 10_HOW4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004568 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 18031158 51639 3653 204 8063 455 SRX2779752 Unrestricted 0.0 Metatranscriptome 3300034659 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034659 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 392715676 930641 388 1348 3284 6340 SRX7519995 Unrestricted 27.17 Metatranscriptome 3300024863 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepC_0h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024863 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 246993261 513932 44 134 490 1030 SRX4547623 Unrestricted 22.72 Metatranscriptome 3300046593 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - G1-R3-B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046593 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.048 120935343 278323 108 83 332 287 Unrestricted 51.09 Metatranscriptome 3300025804 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Metatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_07 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300025804 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen 49.6935 -112.8418 413347942 641005 15 18 136 117 SRX4550438, SRX7705827 Unrestricted 0.0 Metatranscriptome 3300046439 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_43_Fire (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046439 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1484 -81.3585 19072592 44594 157 149 977 814 Unrestricted 66.26 Metatranscriptome 3300008427 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.1ob.15.15dpc CCME-COLORADO 3300008427 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 5185511 20937 33 1 558 11 0.0 Metatranscriptome 3300010124 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_4_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010124 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 78477247 184638 38 338 3282 3442 Unrestricted 0.0 Metatranscriptome 3300030947 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB3 EcM (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030947 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7184 6.3471 471606153 1315329 6471 2041 12961 5789 SRX3350736 Unrestricted 0.0 Metatranscriptome 3300019268 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Metatranscriptome of peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin23_10_metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019268 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 318626205 710402 283 465 5738 3286 SRX3887070 Unrestricted 0.0 Metatranscriptome 3300016679 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES064 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016679 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 46.041 -89.686 47228158 84632 54 37 1591 1753 SRX3780230 Unrestricted 0.0 Metatranscriptome 3300034662 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034662 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 324203555 762561 344 1331 3004 6411 SRX7519970 Unrestricted 26.98 Metatranscriptome 3300018789 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_083 - TARA_N000001380 (ERX1809763-ERR1740128) Canada's Michael Smith Genome Sciences Centre 3300018789 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -54.3826 -65.051 291183476 428693 2 30 7 110 0.0 Metatranscriptome 3300003529 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS898_N3Area_RNA 3300003529 Metatranscriptome Analysis CLC genomics workbench 7.0 released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.943716 -129.985163 3359483 10899 160 26 646 73 0.0 Metatranscriptome 3300040762 *Microbiome Finished Lab enriched marine microbial communities from the Bohai Gulf, China Lab enriched marine microbial communities from the Bohai Gulf, China - AOL Hebei Normal University of Science &Technology 3300040762 Metatranscriptome Analysis Trinity v. 2.4.0 released by Si Li No Yes jackeikee@aliyun.com Si Li No Environmental Aquatic Gulf Marine Unclassified Marine 38.26 118.24 196357819 441656 71 140 310 484 0.0 Metatranscriptome 3300011280 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S23 NT37 metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011280 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 17410433 38102 46 370 877 3605 SRX2524446 Unrestricted 0.0 Metatranscriptome 3300032169 *Microbiome Permanent Draft Metatranscriptome of decayed wood fungal communities from Pinus contorta in National Forests from Montana, United States Metatranscriptome of plant litter fungal communities from Pinus contorta in Bitterroot National Forest, Montana, United States - GP2-LITTER (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032169 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dcullen@wisc.edu Daniel Cullen No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 45.755 -113.9106 574544155 1269727 43 4 188 80 SRX5342940 Unrestricted 29.29 Metatranscriptome 3300032445 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day2_7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032445 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 17732314 32400 14 0 91 2 SRX6856241 Unrestricted 32.0 Metatranscriptome 3300010086 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_24_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010086 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 47009941 109189 79 440 13953 4439 Unrestricted 0.0 Metatranscriptome 3300036459 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036459 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 59.9989 10.7903 111484870 235958 79 22 118 132 SRX8135100 Unrestricted 0.0 Metatranscriptome 3300032152 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen6, Rep 3, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032152 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 22000402 22446 0 0 0 0 SRX5359905, SRX5359904 Unrestricted 0.0 Metatranscriptome 3300002392 *Microbiome Permanent Draft Biogas fermentation microbial communities from biogas plants in Germany Biogas fermentation microbial communities from Germany - Plant 3 RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002392 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes asczyrba@techfak.uni-bielefeld.de Alexander Sczyrba No Engineered Bioreactor Digestate Anaerobic Unclassified Biogas fermentantion 52.0385 8.4956 306994756 555813 12 11 400 21 SRX2501893 Unrestricted 0.0 Metatranscriptome 3300011332 *Microbiome Permanent Draft Soil microbial communities from various locations in USA and Cambodia to study soil gas exchange rates Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300011332 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Oak savanna Soil Unclassified Soil 34.0938 -118.6572 521748598 1274877 128 1290 2383 9873 SRX2525515 Unrestricted 0.0 Metatranscriptome 3300007601 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S14 DCM1_B metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007601 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 73988818 229498 2300 1850 6080 7022 SRX3787140 Unrestricted 0.0 Metatranscriptome 3300007159 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaT_CSR_2013 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007159 Metatranscriptome Analysis megahit v. 0.2.0 No Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment watersheds 41.1289 -78.4195 17986644 60816 1854 6001 7651 12516 SRX7180652 Unrestricted 0.0 Metatranscriptome 3300031499 *Microbiome Permanent Draft Soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_N_R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031499 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thb15@psu.edu Terrence Bell No Engineered Artificial ecosystem Surface biofilm Soil microcosm Unclassified soil 40.7997 -77.8629 21155343 39260 94 31 539 455 SRX5811867 Unrestricted 98.27 Metatranscriptome 3300050690 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae axenic culture microbial communities from LLNL, Livermore, California, USA - f16_d2_W_S25 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050690 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 21958672 24499 3 0 2 4 Restricted 199.43 Metatranscriptome 3300036462 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0606U20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036462 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8973 -97.0409 112233223 243407 261 460 5865 1086 SRX8237041 Unrestricted 26.26 Metatranscriptome 3300003731 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome C0912_C49A8_80 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003731 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 35.7899 -122.3199 4921626 9674 45 53 611 1036 SRX2555016 Unrestricted 0.0 Metatranscriptome 3300032791 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_07AUG2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032791 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3951 -85.3736 194959380 346036 132 106 218 607 SRX7519770 Unrestricted 55.61 Metatranscriptome 3300018597 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_009 - TARA_X000001043 (ERX1782201-ERR1712206) Canada's Michael Smith Genome Sciences Centre 3300018597 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.0609 5.9422 46952228 119116 24 15 149 331 0.0 Metatranscriptome 3300022467 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022467 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil corn rhizosphere 42.3948 -85.3738 973030178 2048555 150 660 440 4855 SRX5335938, SRX5335937 Unrestricted 0.0 Metatranscriptome 3300019028 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_131 - TARA_N000002364 (ERX1789432-ERR1719419) Canada's Michael Smith Genome Sciences Centre 3300019028 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 22.7511 -157.9632 838846932 1768802 0 63 14 237 0.0 Metatranscriptome 3300017271 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Narragansett Bay in marine media K with soil extract, 18 C, 35 psu salinity and 158 ?mol photons light - Eutreptiella gymnastica CCMP 1594 (MMETSP0809) National Center for Genome Resources 3300017271 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 41.6 -71.4 31576186 48028 1 4 1 9 0.0 Metatranscriptome 3300052493 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 113-S77Day63 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052493 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 90664403 198395 27 1 82 25 Unrestricted 63.56 Metatranscriptome 3300037887 *Microbiome Permanent Draft Marine planktonic microbial communities from Bay of Bengal, Indian Ocean Metatranscriptome of marine planktonic microbial communities from Bay of Bengal, Indian Ocean - 3P (SRX5580372-SRR8790603) Nanyang Technological University 3300037887 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. released by JGI data releasing policy Yes Yes flauro@ntu.edu.sg Federico Lauro No Environmental Aquatic Unclassified Marine Unclassified Marine planktonic 5.78 89.11 55093451 246087 1071 226 3204 2296 0.0 Metatranscriptome 3300046172 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_6_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046172 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 57838364 97031 3 0 21 1 Restricted 203.9 Metatranscriptome 3300002645 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF101 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002645 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.180244 2240654 5802 31 210 228 1090 SRX2014392 Unrestricted 0.0 Metatranscriptome 3300061837 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 83_cerealrye_1_T21 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061837 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 43564288 106253 116 79 765 657 Unrestricted 216.33 Metatranscriptome 3300061898 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 39_sorghum_3_T0 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061898 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 89607214 239900 206 181 1345 1295 Unrestricted 142.48 Metatranscriptome 3300032811 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_15MAY2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032811 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3941 -85.3741 62735778 106361 17 14 37 67 SRX7519468 Unrestricted 43.19 Metatranscriptome 3300002869 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 20 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002869 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 7878808 22839 45 86 932 495 Unrestricted 0.0 Metatranscriptome 3300009307 *Microbiome Permanent Draft Microbial communities of freshwater from Kranji Reservoir, Singapore Microbial communities of freshwater from Kranji Reservoir, Singapore - Krb5-1pm Massachusetts Institute of Technology 3300009307 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater reservoir 1.4371666 103.7186571 5955822 18627 15 3 551 131 SRX472184 0.0 Metatranscriptome 3300017597 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 18 C, 32 psu salinity and 534 ?mol photons light - Chaetoceros affinis CCMP 159 (MMETSP0092) (SRX549067-SRR1294453) National Center for Genome Resources 3300017597 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 4854945 9770 4 5 11 4 0.0 Metatranscriptome 3300016832 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Sea in L1 medium with seawater, 24 C, 33 psu salinity and 583 ?mol photons light - Pavlova lutheri RCC 1537 (MMETSP1463) National Center for Genome Resources 3300016832 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 55.743 4.92334 14185389 24774 11 1 30 10 0.0 Metatranscriptome 3300054631 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Schonbrunner Wald, Bavaria, Germany - BW_CL_028R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300054631 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.90607 13.560077 161821756 406568 409 271 1390 1127 Unrestricted 42.47 Metatranscriptome 3300023668 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRE4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023668 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 49.0427 13.6161 28948333 43152 27 33 468 282 SRX4454967 Unrestricted 26.87 Metatranscriptome 3300006687 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP2254 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006687 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 10.09 -99.25 42268451 130538 3387 4741 8898 13176 SRX3299578 Unrestricted 0.0 Metatranscriptome 3300018538 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_147 - TARA_N000002101 (ERX1789665-ERR1719366) Canada's Michael Smith Genome Sciences Centre 3300018538 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 33.061 -66.5435 10345210 27251 0 0 0 9 0.0 Metatranscriptome 3300031506 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T19 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031506 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 63839106 119393 52 41 64 221 SRX5794461 Unrestricted 20.27 Metatranscriptome 3300008777 *Microbiome Permanent Draft Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico - 125m_0.2-1.6micron Georgia Institute of Technology 3300008777 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hypoxic zone Marine Unclassified Ocean water 18.9 -104.5 2287781 4428 13 3 1097 70 SRX854083 0.0 Metatranscriptome 3300019123 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_085 - TARA_N000001030 (ERX1782390-ERR1712195) Canada's Michael Smith Genome Sciences Centre 3300019123 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -62.2231 -49.2139 171030959 380058 81 22 172 190 0.0 Metatranscriptome 3300017293 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Indian River Bay, Delaware, USA in L1 medium, 22 C, 34 psu salinity and 335 ?mol photons light - Prorocentrum minimum CCMP 2233 (MMETSP0269) National Center for Genome Resources 3300017293 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 38.59 -75.1 69668153 94346 9 1 18 1 0.0 Metatranscriptome 3300008955 *Microbiome Permanent Draft Marine bacterioplankton communities from the North Sea island Helgoland off the German coast Marine bacterioplankton communities from the North Sea island Helgoland off the German coast - probe E228 Max Planck Institute for Marine Microbiology 3300008955 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Pelagic zone Marine Unclassified Ocean water 54.18194 7.9 6551951 24186 340 225 1928 1310 0.0 Metatranscriptome 3300006646 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_A3_L (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006646 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 105371047 343012 14990 11071 43090 29199 SRX5781198 Unrestricted 0.0 Metatranscriptome 3300052471 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 128-Pos ControlDay28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052471 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 137875341 262104 14 4 90 15 Unrestricted 56.29 Metatranscriptome 3300030880 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030880 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 59.9982 10.7894 28128474 65014 72 95 341 560 SRX5351845 Unrestricted 0.0 Metatranscriptome 3300017040 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Ross Sea in L1 medium with NH4Cl, 4 C, 32 psu salinity and 517 ?mol photons light - Synedropsis cf. recta CCMP 1620 (MMETSP1176) National Center for Genome Resources 3300017040 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -77.8333 163.0 22615853 29327 3 1 5 1 0.0 Metatranscriptome 3300012470 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012470 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 37.1043 -76.1811 57609515 116498 221 233 2009 4630 SRX3007420 Unrestricted 0.0 Metatranscriptome 3300036487 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metataranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0819S20re (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036487 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0388 202253064 405817 93 357 1780 1424 SRX8670143 Unrestricted 26.17 Metatranscriptome 3300017214 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from North Atlantic Ocean in L1 medium, 22 C, 32 psu salinity and 326 ?mol photons light - Amphidinium carterae CCMP 1314 (MMETSP0258) National Center for Genome Resources 3300017214 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 41.56 -70.583 53704429 56643 3 1 8 1 0.0 Metatranscriptome 3300002883 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI073_200m_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002883 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 42830487 93239 43 35 405 334 Unrestricted 0.0 Metatranscriptome 3300007187 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_C6L_LD (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007187 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 61924382 213472 12534 6233 34434 15323 SRX2522141 Unrestricted 0.0 Metatranscriptome 3300010255 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1300_T MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010255 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 104240540 265393 26 2 224 3 SRX2521299, SRX2521300 Unrestricted 0.0 Metatranscriptome 3300018903 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_080 - TARA_N000001499 (ERX1789636-ERR1719512) Canada's Michael Smith Genome Sciences Centre 3300018903 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -40.6297 -52.0503 221608931 552398 2 13 14 103 0.0 Metatranscriptome 3300008601 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-36 University of Hawaii 3300008601 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 5402680 10330 9 2 534 114 0.0 Metatranscriptome 3300028575 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-7 (Eukaryote Community Metatranscriptome) (version 14) DOE Joint Genome Institute (JGI) 3300028575 Metatranscriptome Analysis MEGAHIT v. 1.0.4b No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 18.7998 -20.70285 790672345 1720066 643 898 1016 2314 SRX5724273 Unrestricted 0.0 Metatranscriptome 3300004608 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004608 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 105366090 369397 5149 3053 18674 7201 Unrestricted 0.0 Metatranscriptome 3300019081 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS676_3p0_dT J. Craig Venter Institute (JCVI) 3300019081 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 62.09708 18.5427 27097066 66160 167 176 310 322 0.0 Metatranscriptome 3300059511 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 56R_CD_T2_R4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059511 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 421770801 1038224 621 374 2526 2216 Unrestricted 46.21 Metatranscriptome 3300059610 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_26 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059610 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 275513554 641344 556 203 2043 999 Unrestricted 0.0 Metatranscriptome 3300052788 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_97 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052788 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 60791501 153162 163 117 528 644 Unrestricted 59.2 Metatranscriptome 3300031642 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_L6_4mM_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031642 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 9707276 16680 0 0 0 3 SRX5783472 Unrestricted 38.94 Metatranscriptome 3300013079 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES022 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013079 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 196195395 408123 200 143 1658 10650 SRX3526951 Unrestricted 0.0 Metatranscriptome 3300010310 *Microbiome Permanent Draft Anaerobic biogas reactor microbial communites from Washington, USA Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2_B SIP RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010310 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dacb@uw.edu David Beck No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic biogas reactor 47.6525 -122.3049 283792449 559475 38 146 11793 2159 SRX2525379 Unrestricted 0.0 Metatranscriptome 3300059658 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 178R_AW_T3_R4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059658 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 181837587 448458 221 207 1018 1207 Unrestricted 70.9 Metatranscriptome 3300037036 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp03_R79 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037036 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 312349587 615376 349 94 709 1423 SRX8841477 Unrestricted 24.74 Metatranscriptome 3300037741 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_OW2_C1_D5_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037741 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 66297913 127032 339 1299 3141 3498 SRX8890240 Unrestricted 205.18 Metatranscriptome 3300018830 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_039 - TARA_N000000006 (ERX1789678-ERR1719267) Canada's Michael Smith Genome Sciences Centre 3300018830 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 18.5918 66.622 189739482 485157 9 7 48 224 0.0 Metatranscriptome 3300035387 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Metatranscriptome of Bradyrhizobium sp. W and Methylocaldum sp. 0917 mixed culture communities from SDSU, California, USA - Exp#7 BR2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035387 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified artificial sand 32.7717 -117.0735 24576916 35726 2 1 14 1 SRX8295553 Unrestricted 196.59 Metatranscriptome 3300016944 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in NEPC medium, 20 C and 206 ?mol photons light - Asterionellopsis glacialis CCMP 134 (MMETSP0705) National Center for Genome Resources 3300016944 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 32.655 -117.14 12070408 23095 57 16 107 27 0.0 Metatranscriptome 3300004966 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 66 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004966 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 61010461 202329 3850 1642 13061 3566 Unrestricted 0.0 Metatranscriptome 3300048981 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 79a (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048981 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.9364 -81.6542 659715 1244 9 2 14 24 Restricted 277.72 Metatranscriptome 3300032551 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_31MAY2016_LR2 (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300032551 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Unclassified Phyllosphere Unclassified phyllosphere 42.39 -85.37 214219970 370541 44 31 41 164 SRX7077611, SRX7077612 Unrestricted 0.0 Metatranscriptome 3300032650 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red2_22May_deep (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032650 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 976422909 1756299 15 7 26 183 SRX6410038 Unrestricted 19.65 Metatranscriptome 3300012872 *Microbiome Permanent Draft Synthetic bacterial communities of pure cultures isolated from sediment of Lake Washington, USA Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under high oxygen condition - MT methane_oxidizing 14strains_24hour-b (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012872 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes milachis@u.washington.edu Ludmila Chistoserdova No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 47.6553 -122.3035 22082856 38854 4 0 948 3 SRX3015715 Unrestricted 0.0 Metatranscriptome 3300001548 *Microbiome Permanent Draft Estuarine microbial mat communities from Elkhorn Slough, Moss Landing, CA, that are H2-evolving and photosynthetic Estuarine microbial mat communities from Elkhorn Slough, California, USA - CR1B Metatranscriptome (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300001548 Metatranscriptome Analysis No Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer Yes 23190731 Environmental Aquatic Intertidal zone Marine Estuary Estuarine 36.8 -121.8 8678212 25721 12 92 218 411 Unrestricted 0.0 Metatranscriptome 3300006408 *Microbiome Permanent Draft Algae and Fungi communities from freshwater lake in Auvergne, France during and after algae bloom Algae and Fungi communities from freshwater lake in Auvergne, France - collected at the beginning of algae bloom, incubated in lab for 1 day Institut Pasteur, Lille, France 3300006408 Metatranscriptome Analysis Trinity 2.06 released per JGI data release policy No Yes luenlee@yahoo.com L Monchy, Luen Luen LI No Environmental Aquatic Lake Freshwater Unclassified Fresh water lake 45.49 2.88 37070330 46109 166 20 322 64 0.0 Metatranscriptome 3300008366 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34687 J. Craig Venter Institute (JCVI) 3300008366 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 7555 24 0 0 0 0 0.0 Metatranscriptome 3300026429 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepC_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026429 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 127474738 265929 45 66 285 472 SRX4547635 Unrestricted 27.19 Metatranscriptome 3300018975 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_131 - TARA_N000002350 (ERX1782140-ERR1711881) Canada's Michael Smith Genome Sciences Centre 3300018975 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 22.7901 -157.9439 503205549 1136739 169 104 852 2526 0.0 Metatranscriptome 3300057185 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Western Region, Iceland - Sphagnum magellanicum C3_MAG_ICE (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300057185 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 149825894 307113 179 122 469 507 Unrestricted 42.22 Metatranscriptome 3300052380 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_163B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052380 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Bulk soil Soil 38.992973 -123.067448 39312822 105308 97 156 755 807 Unrestricted 144.87 Metatranscriptome 3300004801 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004801 Metatranscriptome Analysis megahit v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Unclassified Roots Unclassified Switchgrass rhizosphere and bulk soil 42.3912 -85.383786 732762818 2315903 3164 24322 10275 62105 SRX2705196 Unrestricted 0.0 Metatranscriptome 3300020088 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 2.7-0.2um, replicate a, metaT Georgia Genomics Facility 3300020088 Metatranscriptome Analysis Trinity 2.06 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 24613105 73950 4665 699 10440 1628 0.0 Metatranscriptome 3300003704 *Microbiome Permanent Draft Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, for analyzing deforestation at different spatial scales Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003704 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes nusslein@microbio.umass.edu Nusslein, Klaus, Klaus Nusslein No Environmental Terrestrial Tropical forest Soil Unclassified Tropical rainforest soil -10.0 -62.0 4297753 9319 385 301 3198 905 SRX2566806 Unrestricted 0.0 Metatranscriptome 3300012381 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_24_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012381 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 127022214 303275 141 733 6706 5650 Unrestricted 0.0 Metatranscriptome 3300018864 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_128 - TARA_N000002289 (ERX1789379-ERR1719364) Canada's Michael Smith Genome Sciences Centre 3300018864 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine 0.0003 -153.6759 235045561 539568 19 30 53 330 0.0 Metatranscriptome 3300037627 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_M1_C1_D5_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037627 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 69189575 151602 315 335 3635 1091 SRX9383570 Unrestricted 225.12 Metatranscriptome 3300008808 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_3079 Massachusetts Institute of Technology 3300008808 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 5227674 17847 18 6 436 774 0.0 Metatranscriptome 3300029637 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Metatranscriptome of marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_2000m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029637 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified marine 50.0 -145.0 18193971 40315 35 2 145 312 SRX5337941 Unrestricted 14.25 Metatranscriptome 3300004487 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 38 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004487 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 23878651 82397 1679 1153 6263 2245 Unrestricted 0.0 Metatranscriptome 3300024857 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Colum_RepA_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024857 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 207557186 427202 145 161 1666 1778 SRX4547754 Unrestricted 18.17 Metatranscriptome 3300041421 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass leaf microbial community from Lincoln, Canterbury, New Zealand - RGL17_1 MetaT AgResearch, New Zealand, Mosgeil 3300041421 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Perennial ryegrass leaf -43.648506 172.343549 4054987 7054 82 84 201 138 0.0 Metatranscriptome 3300031079 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T18 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031079 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 27506160 53125 66 29 76 179 SRX5794462 Unrestricted 20.49 Metatranscriptome 3300046571 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - G3-R2-B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046571 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3549 19.0438 98438093 215066 125 263 865 1340 Unrestricted 28.37 Metatranscriptome 3300046238 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_5_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046238 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 36396543 66867 1 2 23 3 Restricted 202.9 Metatranscriptome 3300007342 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S2 Surf_A metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007342 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 154884649 432217 4399 3110 10400 10357 SRX3196585 Unrestricted 0.0 Metatranscriptome 3300019145 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_100 - TARA_N000001610 (ERX1809765-ERR1740132) Canada's Michael Smith Genome Sciences Centre 3300019145 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -12.9723 -96.0122 191708887 510095 15 34 61 263 0.0 Metatranscriptome 3300030588 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO740-VDE011SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030588 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2641 -71.2157 460908645 1002814 173 129 2257 1746 SRX4011339 Unrestricted 0.0 Metatranscriptome 3300034646 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_0000_MSt4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034646 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 118738354 280832 2 0 102 2 SRX8246221 Unrestricted 285.84 Metatranscriptome 3300035346 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0817U12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035346 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.039 50365902 101768 116 317 3234 1003 SRX8239130 Unrestricted 36.23 Metatranscriptome 3300026470 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 73R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026470 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 207932647 434270 176 40 307 661 SRX4796130 Unrestricted 20.16 Metatranscriptome 3300018882 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_135 - TARA_N000002185 (ERX1789654-ERR1719480) Canada's Michael Smith Genome Sciences Centre 3300018882 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 33.0007 -121.8701 228404324 556808 4 27 22 253 0.0 Metatranscriptome 3300050377 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T2_4 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050377 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 75566986 115847 10 3 68 22 Unrestricted 269.76 Metatranscriptome 3300043819 *Microbiome Permanent Draft Sediment microbial communities from various environments and locations in Europe Metatranscriptome of sediment microbial communities from Baltic Sea, Sweden - H2D1S (Metagenome Metatranscriptome) (IMG v5.0) DOE Joint Genome Institute (JGI) 3300043819 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes o.eyice@qmul.ac.uk Ozge Eyice No Environmental Aquatic Sediment Marine Unclassified Sediment 58.9344 17.7391 50611128 109465 24 122 447 615 Unrestricted 36.87 Metatranscriptome 3300017314 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in GSe medium wiht seawater and antibiotics, at 22 C, 18 psu salinity and 279 ?mol photons light - Durinskia baltica CSIRO CS-38 (MMETSP0116_2) National Center for Genome Resources 3300017314 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 76474700 100743 3 10 3 10 0.0 Metatranscriptome 3300003693 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Avena fatua rhizosphere microbial communities - H2_Rhizo_Litter_49 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003693 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mkfstone@berkeley.edu, mkfstone@berkeley.edu; nuccio1@llnl.gov Mary Firestone, Mary Firestone; Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.97364 -123.117453 118138605 298184 89 483 121 2924 SRX3336098 Unrestricted 0.0 Metatranscriptome 3300006405 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006405 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 433914051 1297043 2505 5688 6841 15657 SRX3196460 Unrestricted 0.0 Metatranscriptome 3300032615 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red2_24May_deep (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032615 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 968324837 1648989 20 3 32 136 SRX6410037 Unrestricted 19.64 Metatranscriptome 3300031790 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen6, Rep 3, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031790 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 26092220 30274 3 0 12 1 SRX5359905, SRX5359904 Unrestricted 0.0 Metatranscriptome 3300046213 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_2_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046213 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 42603848 68225 1 0 15 1 Restricted 118.67 Metatranscriptome 3300052785 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_92 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052785 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 25114372 65343 59 96 362 517 Unrestricted 125.33 Metatranscriptome 3300031020 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031020 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ake.olson@slu.se; francis.martin@inrae.fr Ake Olson; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 100851358 249726 36 15 69 50 SRX3344953 Unrestricted 0.0 Metatranscriptome 3300011016 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 81 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011016 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 6979162 17200 42 61 3660 331 Unrestricted 0.0 Metatranscriptome 3300037592 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metataranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R1105U20re (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037592 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0387 33441874 63941 176 546 3966 1563 SRX9149514 Unrestricted 61.61 Metatranscriptome 3300046629 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-174 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046629 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4872 -64.23 138734186 325890 1092 50 1947 662 Unrestricted 18.2 Metatranscriptome 3300059655 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 152R_CD_T3_R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059655 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 259218463 659493 407 302 1806 1720 Unrestricted 88.62 Metatranscriptome 3300046294 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_5_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046294 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 135738798 195016 2 0 31 0 Restricted 145.56 Metatranscriptome 3300009331 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from the North Atlantic ocean - ACM11 University of Georgia 3300009331 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 33387495 98105 12 26 97 108 0.0 Metatranscriptome 3300018853 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_082 - TARA_N000001400 (ERX1782437-ERR1712106) Canada's Michael Smith Genome Sciences Centre 3300018853 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -47.2116 -58.0266 274587198 498519 40 17 94 195 0.0 Metatranscriptome 3300017576 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 15 C, 28 psu salinity and 329 ?mol photons light - Alexandrium fundyense CCMP 1719 (MMETSP0196) (SRX549001-SRR1294387) National Center for Genome Resources 3300017576 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 43.1 70.782 965007 2382 0 0 0 0 0.0 Metatranscriptome 3300030944 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Wood GP-2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030944 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr; dcullen@wisc.edu Francis M. Martin; Daniel Cullen No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 45.755278 -113.910556 356247681 980857 923 592 1567 936 SRX3344915 Unrestricted 0.0 Metatranscriptome 3300046235 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_5_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046235 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 73108734 124915 1 0 18 1 Restricted 148.64 Metatranscriptome 3300010127 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_8_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010127 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 82168884 192408 69 617 7636 4517 Unrestricted 0.0 Metatranscriptome 3300008424 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy - t10.CR.A.RNAseq.exp2 University of Naples 3300008424 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Cheese 2726466 6187 16 0 96 18 0.0 Metatranscriptome 3300030585 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cnb4 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030585 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 452864804 963255 155 175 1042 779 SRX4547036 Unrestricted 0.0 Metatranscriptome 3300019148 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_080 - TARA_N000001477 (ERX1789676-ERR1719431) Canada's Michael Smith Genome Sciences Centre 3300019148 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -40.6083 -51.9557 643560559 1340357 1 24 0 84 0.0 Metatranscriptome 3300052332 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_6B2_100218_2020 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052332 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@dbi.udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 86149889 211617 425 87 950 483 Unrestricted 216.31 Metatranscriptome 3300033539 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_28AUG2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300033539 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3941 -85.3741 160102911 282149 129 67 173 428 SRX7519903 Unrestricted 26.6 Metatranscriptome 3300018978 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_136 - TARA_N000002965 (ERX1789639-ERR1719422) Canada's Michael Smith Genome Sciences Centre 3300018978 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 17.0552 -118.9008 559853436 1179900 7 66 19 447 0.0 Metatranscriptome 3300057188 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Frasne, France - Sphagnum magellanicum 4C_MAG_FR (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300057188 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 144544360 322425 271 159 591 707 Unrestricted 36.82 Metatranscriptome 3300032708 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red2_22May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032708 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 1092979952 1961037 28 16 44 218 SRX6410017 Unrestricted 19.74 Metatranscriptome 3300020085 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate a, metaT Georgia Genomics Facility 3300020085 Metatranscriptome Analysis Trinity 2.06 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified water column 10.5 -64.66 38166613 123188 7240 1686 15509 4401 0.0 Metatranscriptome 3300049116 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 74a (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049116 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.9364 -81.6542 583223 1021 2 1 9 13 Restricted 473.26 Metatranscriptome 3300055307 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP7.2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055307 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 358738259 744776 19 18 116 144 Unrestricted 50.89 Metatranscriptome 3300008796 *Microbiome Permanent Draft Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample KO-1 University of Duisburg-Essen 3300008796 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Pond Freshwater Unclassified Eutrophic pond 51.46 7.0 124526849 433748 36 77 821 453 SRX505334 0.0 Metatranscriptome 3300009829 *Microbiome Permanent Draft Sorghum rhizosphere soil microbial communities from California, USA Sorghum rhizosphere soil microbial communities under drought stress in Albany, CA - sample D QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300009829 Metatranscriptome Analysis Trinity released per PI Yes Yes xuling@berkeley.edu Ling Xu No Host-associated Plants Rhizosphere Roots Soil soil 37.887207 -122.304401 44777288 108614 4079 7187 10393 20609 0.0 Metatranscriptome 3300016880 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in DY-V medium with 0.001% Yeast extract and Rice grains, at 18 C, 0 psu salinity and 385 ?mol photons light - Ochromonas sp. BG-1 (MMETSP1105) National Center for Genome Resources 3300016880 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 27007155 28243 2 1 2 5 0.0 Metatranscriptome 3300017009 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in GSe medium with ammonium, 22 C, 32 psu salinity and 371 ?mol photons light - Aureococcus anophagefferens CCMP 1850 (MMETSP0914) National Center for Genome Resources 3300017009 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Estuary marine 40.6508 -73.1524 25484248 34960 3 2 1 2 0.0 Metatranscriptome 3300018535 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_025 - TARA_E500000200 (ERX1782124-ERR1711984) Canada's Michael Smith Genome Sciences Centre 3300018535 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.3833 19.4183 28811173 51997 0 13 7 93 0.0 Metatranscriptome 3300021939 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-37M (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021939 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 173124012 320128 71 49 120 184 SRX5203109 Unrestricted 0.0 Metatranscriptome 3300023690 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023690 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 49.043 13.6183 34967668 49275 23 62 347 370 SRX4454736 Unrestricted 22.83 Metatranscriptome 3300034405 *Microbiome Permanent Draft Phytoplankton bloom bacterial communities from coast of New Jersey, USA Phytoplankton bloom bacterial communities from coast of New Jersey, USA - 3 meters Michigan State University 3300034405 Metatranscriptome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy No Yes zehnp1jr@cmich.edu Jessica Zehnpfennig No Environmental Aquatic Coastal Marine Unclassified phytoplankton bloom 37.8665611 -70.23155278 535490822 1731161 1310 354 1966 1511 0.0 Metatranscriptome 3300061895 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 31_hairyvetch_1_T0 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061895 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 84797771 227287 156 196 1035 1211 Unrestricted 137.17 Metatranscriptome 3300029601 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Trp2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029601 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 69258506 126181 13 3 207 7 SRX5356209 Unrestricted 64.55 Metatranscriptome 3300008549 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-23 University of Hawaii 3300008549 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 422553 683 0 0 35 11 0.0 Metatranscriptome 3300049078 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_1 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300049078 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 53799306 122452 115 25 222 130 Unrestricted 30.4 Metatranscriptome 3300007242 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 7/17/14 C RNA (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007242 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ebyoung@uwm.edu Erica Young, Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 252849564 654477 1805 1561 4476 7085 SRX5628653 Unrestricted 0.0 Metatranscriptome 3300061834 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 60_hairyvetch_3_T5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061834 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 39838628 106978 81 90 677 727 Unrestricted 118.85 Metatranscriptome 3300024571 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepA_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024571 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 262217813 549902 73 138 916 1231 SRX4547607 Unrestricted 19.16 Metatranscriptome 3300037884 *Microbiome Permanent Draft Marine planktonic microbial communities from Bay of Bengal, Indian Ocean Metatranscriptome of marine planktonic microbial communities from Bay of Bengal, Indian Ocean - 3H (SRX5580369-SRR8790606) Nanyang Technological University 3300037884 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. released by JGI data releasing policy Yes Yes flauro@ntu.edu.sg Federico Lauro No Environmental Aquatic Unclassified Marine Unclassified Marine planktonic 2.49 83.99 58971074 270456 1294 253 3950 2947 0.0 Metatranscriptome 3300001809 *Microbiome Permanent Draft Microbial community impact on carbon sequestration in managed wetland Carbon farming Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk Metatranscriptome (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300001809 Metatranscriptome Analysis No Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Wetland 38.1072 -121.6485 128752283 424738 157 785 8146 5859 SRX3313362 Unrestricted 0.0 Metatranscriptome 3300004605 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 40 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004605 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 123981441 348752 7478 2541 27710 5575 Unrestricted 0.0 Metatranscriptome 3300008873 *Microbiome Permanent Draft Microbial communities of Wadden Sea tidal flat in Germany Microbial communities of Wadden Sea tidal flat in Germany - 1050 risingTide Bielefeld University 3300008873 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Tidal flat 53.73 7.67 4753077 15856 39 31 686 250 0.0 Metatranscriptome 3300030832 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030832 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 59.9992 10.7901 20344658 44657 93 212 705 899 SRX5351412 Unrestricted 0.0 Metatranscriptome 3300028231 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepB_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028231 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 6315438 14097 15 24 80 112 SRX5245738 Unrestricted 16.15 Metatranscriptome 3300008958 *Microbiome Permanent Draft Microbial communities from seawater in eastern North Pacific Ocean Marine microbial communities from eastern North Pacific Ocean - P1 particle-associated University of Georgia 3300008958 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ocean water 145445922 430225 45 33 1007 1181 0.0 Metatranscriptome 3300018594 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_100 - TARA_N000001614 (ERX1809463-ERR1739849) Canada's Michael Smith Genome Sciences Centre 3300018594 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -12.9723 -96.0122 44687269 114867 22 34 145 445 0.0 Metatranscriptome 3300011091 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS907_80_13H6 reanalysis Marine Biological Laboratory 3300011091 Metatranscriptome Analysis CLC genomics wb9 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933 -130.014 1191941 3271 16 0 35 0 0.0 Metatranscriptome 3300046730 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_3_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046730 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 32849636 54328 1 0 14 0 Restricted 459.08 Metatranscriptome 3300035569 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - 8B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035569 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4211 16.6688 240831369 510753 285 659 2229 2630 SRX8209009 Unrestricted 35.37 Metatranscriptome 3300041897 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_273 MetaT_extra_run AgResearch, New Zealand, Mosgeil 3300041897 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 163276 327 48 65 133 38 0.0 Metatranscriptome 3300018513 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_047 - TARA_N000000284 (ERX1782447-ERR1712145) Canada's Michael Smith Genome Sciences Centre 3300018513 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -2.0409 72.1645 10012516 21375 0 3 5 52 0.0 Metatranscriptome 3300008910 *Microbiome Permanent Draft Eukaryotic communities of quiescent and activated human skeletal muscle stem cells from California, USA Eukaryotic communities of quiescent and activated human skeletal muscle stem cells from California, USA - Quiescent 2 Stanford University 3300008910 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human HuSC Cell culture Unclassified Human skeletal muscle 37.43 -122.17 58230356 134398 0 3 15 45 ERX1052322 0.0 Metatranscriptome 3300008774 *Microbiome Permanent Draft Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico - 30m_0.2-1.6micron Georgia Institute of Technology 3300008774 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hypoxic zone Marine Unclassified Ocean water 18.9 -104.5 1362460 2829 8 13 491 110 SRX854074 0.0 Metatranscriptome 3300042420 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_370_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042420 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 42786720 53785 1 0 9 0 Unrestricted 339.89 Metatranscriptome 3300031412 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031412 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 27524786 52186 95 37 151 220 SRX5352258 Unrestricted 18.31 Metatranscriptome 3300004616 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004616 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 129742981 435214 3808 1962 14361 4688 Unrestricted 0.0 Metatranscriptome 3300006684 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP957 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006684 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -27.98 63.25 34007283 116414 1000 1941 3228 7074 SRX3299443 Unrestricted 0.0 Metatranscriptome 3300048943 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 20 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048943 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 42.2817 -81.2062 14334264 30193 15 6 59 20 Restricted 44.27 Metatranscriptome 3300032448 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day9_8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032448 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 29527620 50129 7 0 15 2 SRX6857976 Unrestricted 273.38 Metatranscriptome 3300037078 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp02_R42 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037078 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 357958191 726069 786 106 1619 1840 SRX8837881 Unrestricted 21.13 Metatranscriptome 3300017594 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine sediment eukaryotic communities from Great South Bay, New York in ATCC medium 790BY, 23 C, 25 psu salinity and 174 ?mol photons light - Aplanochytrium stocchinoi GSBS06 (MMETSP1346) (SRX549057-SRR1294443) National Center for Genome Resources 3300017594 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Sediment marine sediment 40.7 -73.1 6292778 9462 0 2 0 1 0.0 Metatranscriptome 3300018622 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS684_3p0_dT J. Craig Venter Institute (JCVI) 3300018622 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 66181939 181839 208 395 453 599 0.0 Metatranscriptome 3300053650 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T1_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053650 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 39126360 87802 24 4 189 35 Unrestricted 761.48 Metatranscriptome 3300021881 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-10 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021881 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 2.4064 -13.6054 48008574 103709 27 56 72 173 SRX5203786 Unrestricted 0.0 Metatranscriptome 3300043283 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - PKF9.Sep18 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043283 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.2905 -110.5106 8-9 15524961 32391 38 3 1055 17 SRX14798414 Unrestricted 27.92 Metatranscriptome 3300003953 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS908_80_13INC Marine Biological Laboratory 3300003953 Metatranscriptome Analysis CLC Genomics WB7 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 1957109 5229 148 6 139 15 0.0 Metatranscriptome 3300020606 *Microbiome Finished Microbial communities from sugarcane rhizosphere in Campinas, Brazil Microbial communitiy from sucarcane rhizosphere variety RB under irrigated condition in Campinas, Brazil - Sample RB RB Illumina 3300020606 Metatranscriptome Analysis de novo assembly using IDBA-UD software released by JGI data releasing policy No Yes leticiabp11@gmail.com Leticia Pereira No Host-associated Plants Rhizosphere Roots Unclassified rhizosphere -22.33333333 -47.1 36622681 96174 1047 1444 10626 4038 0.0 Metatranscriptome 3300031550 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean - PS103-4.R3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031550 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified marine -55.8778 1.056 113532727 250008 2 1 12 68 SRX5356510 Unrestricted 40.23 Metatranscriptome 3300011073 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 74 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011073 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 91523560 199820 159 405 14156 1824 Unrestricted 0.0 Metatranscriptome 3300031109 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031109 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 29061823 59688 62 35 107 172 SRX5794322 Unrestricted 31.61 Metatranscriptome 3300019025 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001565 (ERX1399745-ERR1328126) Canada's Michael Smith Genome Sciences Centre 3300019025 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 36.1715 -29.023 490381766 1698560 257 108 607 1612 0.0 Metatranscriptome 3300038173 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_M1_C1_D6_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038173 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 48943978 106163 232 216 3330 598 SRX9390883 Unrestricted 276.3 Metatranscriptome 3300046276 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_4_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046276 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 99861119 148229 4 0 19 1 Restricted 92.8 Metatranscriptome 3300002648 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF117 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002648 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 4534938 11343 130 638 563 3139 SRX2014405 Unrestricted 0.0 Metatranscriptome 3300017217 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Baffin Bay in L1 medium with seawater, 2 C, 33 psu salinity and 570 ?mol photons light - Pyramimonas sp. CCMP 2087 (MMETSP1445) National Center for Genome Resources 3300017217 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 78.285 -73.0525 28863930 37025 10 2 9 2 0.0 Metatranscriptome 3300037769 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - F19MarL (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037769 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4327 16.6819 62262906 128938 88 628 572 1975 SRX9165750 Unrestricted 48.28 Metatranscriptome 3300036484 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Metatranscriptome of forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_13 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036484 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 197792845 467377 14 127 730 621 SRX8240606 Unrestricted 69.86 Metatranscriptome 3300016739 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071408BT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016739 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 345263126 753465 222 479 3174 3840 SRX3781205 Unrestricted 0.0 Metatranscriptome 3300031201 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_L6_32mM_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031201 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 38850385 53503 1 0 1 3 SRX5783589 Unrestricted 39.05 Metatranscriptome 3300018754 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_111 - TARA_N000001810 (ERX1789618-ERR1719236) Canada's Michael Smith Genome Sciences Centre 3300018754 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -16.9601 -100.6335 135005831 343762 5 15 32 119 0.0 Metatranscriptome 3300018576 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_122 - TARA_N000001942 (ERX1782464-ERR1711929) Canada's Michael Smith Genome Sciences Centre 3300018576 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.9948 -139.2172 33488427 77944 5 28 34 160 0.0 Metatranscriptome 3300010860 *Microbiome Permanent Draft Forest soil eukaryotic communities from Alaska, USA, for a soil warming experiment in a boreal forest Boreal forest soil eukaryotic communities from Alaska, USA - C5-2 Metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010860 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes treseder@uci.edu Kathleen Treseder No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Boreal forest soil 63.883 -145.733 154397278 359812 425 343 21727 5879 SRX3007277 Unrestricted 0.0 Metatranscriptome 3300016947 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in NEPC medium w/o silicate, at 20 C, 30 psu salinity and 529 ?mol photons light - Amphiprora sp. CCMP467 (MMETSP0725) National Center for Genome Resources 3300016947 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 27263785 32081 9 16 10 12 0.0 Metatranscriptome 3300035384 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Metatranscriptome of Boechera depauperate grown with Bradyrhizobium sp. W and Methylocaldum sp. 0917 mixed culture communities from SDSU, California, USA - Exp#4 BR2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035384 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Host-associated Plants Unclassified Phyllosphere Unclassified plant growth chamber 32.7717 -117.0735 29218550 40986 5 1 25 4 SRX8295116 Unrestricted 575.57 Metatranscriptome 3300036124 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of sediment microbial communities from Prado wetlands, California, USA - CSM_Prado_Oct18_AM3_1.5z2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036124 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 55215935 110054 75 223 884 912 SRX8771444 Unrestricted 28.44 Metatranscriptome 3300017371 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in K/2 medium, 20 C, 35 psu salinity and 555 ?mol photons light - Pelagodinium beii RCC 1491 (MMETSP1338) National Center for Genome Resources 3300017371 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 67570267 84905 6 5 11 11 0.0 Metatranscriptome 3300030679 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 6_T2E_3DKB8 developmental time series (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030679 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 45101589 63245 31 94 411 567 SRX4645830 Unrestricted 0.0 Metatranscriptome 3300040784 *Microbiome Finished Lab enriched marine microbial communities from the Bohai Gulf, China Lab enriched marine microbial communities from the Bohai Gulf, China - ONH Hebei Normal University of Science &Technology 3300040784 Metatranscriptome Analysis Trinity v. 2.4.0 released by Si Li No Yes jackeikee@aliyun.com Si Li No Environmental Aquatic Gulf Marine Unclassified Marine 38.26 118.24 83535522 153109 34 36 115 167 0.0 Metatranscriptome 3300002406 *Microbiome Permanent Draft Biogas fermentation microbial communities from biogas plants in Germany Biogas fermentation microbial communities from Germany - Plant 1 RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002406 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes asczyrba@techfak.uni-bielefeld.de Alexander Sczyrba No Engineered Bioreactor Digestate Anaerobic Unclassified Biogas fermentantion 52.0385 8.4956 137945032 291531 28 14 400 52 SRX2501626 Unrestricted 0.0 Metatranscriptome 3300005409 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1300_B MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005409 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 58022633 141338 1050 8 2601 25 SRX2521625, SRX2521624 Unrestricted 0.0 Metatranscriptome 3300049105 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 64 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049105 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.6663 -82.0816 23239204 36120 26 29 76 135 Restricted 50.24 Metatranscriptome 3300000336 *Microbiome Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Thermokarst Bog cDNA B3 Metatranscriptome DOE Joint Genome Institute (JGI) 3300000336 Metatranscriptome Analysis No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 12359873 38880 277 320 6705 1132 0.0 Metatranscriptome 3300010895 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_8_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010895 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 35993699 81237 65 485 6402 3465 Unrestricted 0.0 Metatranscriptome 3300029695 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029695 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.305 -116.2547 111021728 282359 170 440 760 1622 SRX5335929 Unrestricted 12.17 Metatranscriptome 3300041530 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_148 MetaT AgResearch, New Zealand, Mosgeil 3300041530 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 27101104 60270 322 139 2333 163 0.0 Metatranscriptome 3300003570 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA Grassland soil microbial communities from Hopland, California, USA - Sample H2_Bulk_34 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003570 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes pettridge2@llnl.gov, pettridge2@llnl.gov; nuccio1@llnl.gov Jennifer Pett-Ridge, Jennifer Pett-Ridge; Erin Nuccio No Environmental Terrestrial Grasslands Soil Bulk soil Avena fatua rhizosphere 38.972988 -123.116539 80289279 245559 326 307 1844 2025 SRX2563590 Unrestricted 0.0 Metatranscriptome 3300008816 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of boa constrictors from Steinhart Aquarium in San Francisco, USA - CAS06_Lung University of California, San Francisco 3300008816 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Lung Respiratory system Unclassified Lung 3742749 11538 0 0 0 0 SRX170614 0.0 Metatranscriptome 3300003671 *Microbiome Permanent Draft Host associated microbial communities of the deepwater sea snail Ifremeria nautilei, from Lau Basin, SW Pacific Ocean Host associated microbial communities of the deepwater sea snail Ifremeria nautilei, from Lau Basin, SW Pacific Ocean - Sample Georgia Institute of Technology 3300003671 Metatranscriptome Analysis custom scripts released per JGI data release policy No Yes sagatat@alverno.edu Ashleigh Sagat No Host-associated Mollusca Unclassified Unclassified Unclassified marine hydrothermal gastropod 112663211 409658 2406 385 44151 21033 0.0 Metatranscriptome 3300016986 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in GSe medium with ammonium, 22 C, 32 psu salinity and 413 ?mol photons light - Pelagomonas calceolata CCMP 1756 (MMETSP0887) National Center for Genome Resources 3300016986 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 30.8333 -136.8333 22740730 25059 2 1 6 1 0.0 Metatranscriptome 3300012779 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Simoncouche, Canada - S_130206_E_mt (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012779 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.2311 -71.2508 241238025 535229 661 190 9800 5918 SRX3015286 Unrestricted 0.0 Metatranscriptome 3300043799 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA109 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043799 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Unclassified Soil Unclassified soil 35.7877 -78.6442 20471481 34407 107 262 1290 1630 Unrestricted 101.81 Metatranscriptome 3300019265 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019265 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 3.8381 -73.3194 275324050 668439 883 731 116775 4867 SRX3939607 Unrestricted 0.0 Metatranscriptome 3300008698 *Microbiome Permanent Draft Microbial communities of saline water collected from the North Sea in Germany Microbial communities of saline water collected from the North Sea in Germany - HE327_3b Goettingen Genomics Laboratory 3300008698 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified North sea 54.4223 7.6833 8339242 31421 466 288 2739 1728 0.0 Metatranscriptome 3300024854 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Colum_RepC_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024854 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 221246956 427006 62 270 758 1841 SRX4547781 Unrestricted 24.44 Metatranscriptome 3300004590 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 28_LOW6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004590 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 56888376 148517 394 26 1331 46 SRX2779921 Unrestricted 0.0 Metatranscriptome 3300004484 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 100_LOW12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004484 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 24198997 54154 72 17 299 31 SRX2780170 Unrestricted 0.0 Metatranscriptome 3300028092 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 28R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028092 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 95749151 173795 98 15 133 280 SRX5172109 Unrestricted 44.4 Metatranscriptome 3300035609 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0819M20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035609 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0387 163568551 348948 187 217 4839 763 SRX8237433 Unrestricted 51.49 Metatranscriptome 3300037624 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_M1_C1_D4_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037624 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 61161629 124960 300 759 2562 2192 SRX9383569 Unrestricted 180.44 Metatranscriptome 3300031810 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA1 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031810 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 49.043 13.6183 52006805 86153 33 45 190 252 SRX5243249, SRX4454981 Unrestricted 0.0 Metatranscriptome 3300018867 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_065 - TARA_N000000968 (ERX1789681-ERR1719251) Canada's Michael Smith Genome Sciences Centre 3300018867 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -35.2351 26.3022 200541876 551492 2 45 11 354 0.0 Metatranscriptome 3300017120 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in Aquil nutrients amended seawater with alpha-glycerophosphate, at 20 C, 35 psu salinity and 726 ?mol photons light - Emiliania huxleyi PLY M219 (MMETSP1152) National Center for Genome Resources 3300017120 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 35863617 44406 6 7 9 7 0.0 Metatranscriptome 3300003707 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Yellowstone National Park, Wyoming, USA - Narrow Gauge (NG_F) (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003707 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hypersaline mat 44.376 -110.69 1839011 2309 27 0 39 0 SRX2576734 Unrestricted 0.0 Metatranscriptome 3300041564 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_45 MetaT AgResearch, New Zealand, Mosgeil 3300041564 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 3998909 8640 67 56 528 88 0.0 Metatranscriptome 3300004565 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 21_HOW5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004565 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 17123990 43484 1153 204 1909 580 SRX4921646 Unrestricted 0.0 Metatranscriptome 3300006240 *Microbiome Permanent Draft Marine sediment microbial communities from different distances from oil contamination, Gulf of Mexico Marine sediment microbial communities, about 1 km from oil contamination, maybe ambient, Gulf of Mexico - BC120 Yale Center for Genome Analysis 3300006240 Metatranscriptome Analysis idba_tran released per JGI data release policy No Yes phu@lbl.gov Ping Hu No Environmental Aquatic Oceanic Marine Oil-contaminated sediment marine 28.3 -88.2 31909919 77847 1108 553 10850 1749 0.0 Metatranscriptome 3300019043 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_109 - TARA_N000001784 (ERX1782103-ERR1712098) Canada's Michael Smith Genome Sciences Centre 3300019043 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com Benjamin Tully No Environmental Aquatic Unclassified Marine Unclassified Marine 2.0649 -84.5546 611990511 1476188 95 134 330 931 0.0 Metatranscriptome 3300008391 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34707 J. Craig Venter Institute (JCVI) 3300008391 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 17900 30 0 0 4 0 0.0 Metatranscriptome 3300008998 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Eukaryotic communities of water from different depths collected during the Tara Oceans expedition - TARA_A100000548 Genoscope 3300008998 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ocean water 1323699412 4335944 15 60 43 501 ERX509584 0.0 Metatranscriptome 3300018554 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS676_3p0 J. Craig Venter Institute (JCVI) 3300018554 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 62.09708 18.5427 5684704 18189 29 32 564 625 0.0 Metatranscriptome 3300016686 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES143 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016686 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.099 -89.405 58906914 124243 160 153 2729 3024 SRX3780225 Unrestricted 0.0 Metatranscriptome 3300011051 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 21 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011051 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 38654935 91806 76 187 5576 926 Unrestricted 0.0 Metatranscriptome 3300038151 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_M1_C1_D3_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038151 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 19218933 37204 344 176 6586 546 SRX9390237 Unrestricted 242.58 Metatranscriptome 3300018776 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_125 - TARA_N000002017 (ERX1789638-ERR1719404) Canada's Michael Smith Genome Sciences Centre 3300018776 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -8.9111 -142.5571 151554707 408151 13 24 35 223 0.0 Metatranscriptome 3300041857 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_315 MetaT AgResearch, New Zealand, Mosgeil 3300041857 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 42047893 87341 207 198 1614 618 0.0 Metatranscriptome 3300046604 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-85 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046604 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4413 -64.1645 96940374 239770 662 31 1136 334 Unrestricted 26.95 Metatranscriptome 3300017264 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine host-associated eukaryotic communities from Pacific Ocean in inside host, 26 C, 35 psu salinity and 379 ?mol photons light - Symbiodinium sp. C15 (MMETSP1371) National Center for Genome Resources 3300017264 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Microbial Unclassified Dinoflagellates Unclassified marine host-associated 50921262 69663 5 19 8 49 SRX554276 0.0 Metatranscriptome 3300016721 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Gulf of Mexico in HESNW medium w/o silica, 23 C, 30 psu salinity and 507 ?mol photons light - Thoracosphaera heimii CCCM 670 (MMETSP0225) National Center for Genome Resources 3300016721 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 23.809 -89.757 314809 1043 0 0 1 0 0.0 Metatranscriptome 3300021872 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S5 C27 B21 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021872 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 34.719778 -14.259726 42615025 85173 82 48 155 217 SRX5204099 Unrestricted 0.0 Metatranscriptome 3300017147 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from English Channel in K medium with silica, 15 C, 21 psu salinity and 310 ?mol photons light - Skeletonema costatum 1716 (MMETSP0013_2) National Center for Genome Resources 3300017147 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 48.45 3.57 35415182 33899 7 1 7 5 0.0 Metatranscriptome 3300009736 *Microbiome Permanent Draft Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling - T10-HHNH4 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009736 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes milachis@u.washington.edu Ludmila Chistoserdova No Engineered Modeled Plant nodule Simulated communities (microbial mixture) Unclassified Methane-oxidizing 47.6193 -122.2449 45021535 130276 0 1 495 6 SRX2525435 Unrestricted 0.0 Metatranscriptome 3300007596 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S19 DCM_B metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007596 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 64515886 216098 4679 2104 11815 6116 SRX3787302 Unrestricted 0.0 Metatranscriptome 3300006227 *Microbiome Permanent Draft Marine sediment microbial communities from different distances from oil contamination, Gulf of Mexico Marine sediment microbial communities, 10.1 km from oil contamination, ambient, Gulf of Mexico - BC101 Yale Center for Genome Analysis 3300006227 Metatranscriptome Analysis idba_tran released per JGI data release policy No Yes phu@lbl.gov Ping Hu No Environmental Aquatic Oceanic Marine Sediment sediment 28.3 -88.2 38890870 91743 1138 1673 9992 4613 0.0 Metatranscriptome 3300024567 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepA_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024567 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 258086977 518915 83 188 785 1373 SRX4547617 Unrestricted 22.16 Metatranscriptome 3300035592 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - May D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035592 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.423 16.6683 59525366 115014 361 408 3700 1476 SRX8209582 Unrestricted 57.1 Metatranscriptome 3300023551 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic - CSA4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023551 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 49.0427 13.6161 11580310 25875 52 40 1524 430 SRX4455246 Unrestricted 51.75 Metatranscriptome 3300017186 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of freshwater eukaryotic communities from unknown location in DY-V medium, at 18 C and 232 ?mol photons light - Gloeochaete wittrockiana SAG 46.84 (MMETSP1089) National Center for Genome Resources 3300017186 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 40434678 51366 19 4 22 7 0.0 Metatranscriptome 3300049151 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Metatranscriptome of beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - B3_RE2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049151 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Stomach Digestive system Rumen fluid Beaver rectum 49.255245 -122.508517 51715896 102398 2 4 53 17 Restricted 26.65 Metatranscriptome 3300004790 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004790 Metatranscriptome Analysis megahit v. 0.2.0 No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 511782271 1453586 2306 1003 6075 5800 SRX2518346 Unrestricted 0.0 Metatranscriptome 3300016920 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, no silica, at 16 C, 34 psu salinity and 500 ?mol photons light - Pleurochrysis carterae CCMP 645 (MMETSP1137) National Center for Genome Resources 3300016920 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 20923662 30689 19 8 20 13 0.0 Metatranscriptome 3300047438 *Microbiome Permanent Draft Enriched green algae-associated microbial communities from Montana State University, Bozeman, MT, USA Metatranscriptome of enriched green algae-associated microbial communities from Montana State University, Bozeman, MT, USA - SLA-IM-Rep2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047438 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes robin_g@montana.edu Robin Gerlach No Host-associated Algae Unclassified Green algae Unclassified green algae 45.6655 -111.0466 42585318 82380 6 13 52 116 Unrestricted 577.11 Metatranscriptome 3300016647 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Gulf of Mexico in f/2 medium with Bay of Fundy seawater, no silicate, 21 C, 35 psu salinity and 515 ?mol photons light - Nephroselmis pyriformis CCMP 717 (MMETSP0034_2) National Center for Genome Resources 3300016647 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. released by JGI data releasing policy Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 29.3833 -94.8833 38782841 53890 52 1 78 13 SRX549033 0.0 Metatranscriptome 3300030979 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France, for metatranscriptomics studies - Site 11 - Champenoux / Amance forest (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030979 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr; bjorn.lindahl@slu.se Francis M. Martin; Bjorn D. Lindahl No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7585 6.3578 659731181 1900432 10137 3938 22233 12412 SRX2718661 Unrestricted 0.0 Metatranscriptome 3300043902 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA48a (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043902 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Unclassified Soil Unclassified soil 35.7877 -78.6442 39084225 87697 212 377 1921 2334 Unrestricted 48.24 Metatranscriptome 3300003507 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS827_N3Area_RNA 3300003507 Metatranscriptome Analysis CLC genomics workbench released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.944 -129.985163 4761312 15090 239 50 1312 120 0.0 Metatranscriptome 3300017230 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, at 24 C, 35 psu salinity and 714 ?mol photons light - Chroomonas cf. mesostigmatica CCMP 1168 (MMETSP0047_2) National Center for Genome Resources 3300017230 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39037015 60755 7 11 11 12 0.0 Metatranscriptome 3300004765 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004765 Metatranscriptome Analysis megahit v. 0.2.0 No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 142873567 425530 1076 330 3639 2258 SRX2518207 Unrestricted 0.0 Metatranscriptome 3300066459 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Metatranscriptome of woodchip biofilm microbial communities from lab scale WBRs in New York, USA - hf_drw_p2_t7_h28_prok (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300066459 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 109402812 270092 136 127 1351 591 Unrestricted 0.0 Metatranscriptome 3300008574 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-14 University of Hawaii 3300008574 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 1340759 2438 7 2 124 23 0.0 Metatranscriptome 3300011326 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S21 Surf_B metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011326 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 125639999 294619 158 84 1696 1699 SRX5632418 Unrestricted 0.0 Metatranscriptome 3300002341 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI - D_52min_Anaerobic (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002341 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes tmcmahon@cae.wisc.edu, tmcmahon@engr.wisc.edu; tmcmahon@cae.wisc.edu Sludge Phage users, Katherine McMahon; Trina McMahon Yes 20148930, 26555245 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.078418 -89.386482 75179610 156423 32 77 117 218 SRX2554571 Unrestricted 0.0 Metatranscriptome 3300003682 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_03_M0_10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003682 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 63261746 159221 290 102 710 1218 SRX2570275 Unrestricted 0.0 Metatranscriptome 3300066462 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Metatranscriptome of woodchip biofilm microbial communities from lab scale WBRs in New York, USA - hf_drw_p2_t10_h100_prok (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300066462 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 95941498 241628 73 65 595 339 Unrestricted 0.0 Metatranscriptome 3300027083 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0940-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300027083 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 199495519 365758 27 10 25 51 SRX5244906 Unrestricted 75.65 Metatranscriptome 3300018814 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_038 - TARA_N000000047 (ERX1789515-ERR1719274) Canada's Michael Smith Genome Sciences Centre 3300018814 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 19.0284 64.5126 192966232 437677 3 5 12 123 0.0 Metatranscriptome 3300005242 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0300_T MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005242 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 42839059 104089 112 1 411 6 SRX2521360, SRX2521359 Unrestricted 0.0 Metatranscriptome 3300017024 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in NEPC medium, resuspended w/o silicate, 20 C and 216 ?mol photons light - Asterionellopsis glacialis CCMP 134 (MMETSP0706) National Center for Genome Resources 3300017024 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 32.655 -117.14 16775613 28561 37 16 63 36 0.0 Metatranscriptome 3300041517 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Bulk soil microbial community from Lincoln, Canterbury, New Zealand - BS17_4 MetaT AgResearch, New Zealand, Mosgeil 3300041517 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Environmental Terrestrial Unclassified Soil Agricultural land Dairy farm pasture soil -43.648506 172.343549 9061873 15363 206 168 1074 456 0.0 Metatranscriptome 3300018893 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_092 - TARA_N000001305 (ERX1789445-ERR1719354) Canada's Michael Smith Genome Sciences Centre 3300018893 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -33.688 -71.9903 388817754 610935 2 6 7 24 0.0 Metatranscriptome 3300017382 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Baltic Sea in f/2 medium with sea water w/o silica, 3 C, 3 psu salinity and 693 ?mol photons light - Scrippsiella Hangoei SHTV-5 (MMETSP0360) National Center for Genome Resources 3300017382 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 59.51 23.13 68312026 97639 0 1 0 1 0.0 Metatranscriptome 3300057139 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T1_2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300057139 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 81458867 127995 18 7 207 32 Unrestricted 0.0 Metatranscriptome 3300012404 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_8_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012404 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 198492152 482504 144 761 6808 6689 Unrestricted 0.0 Metatranscriptome 3300031750 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean - PS103-3.R3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031750 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified marine -51.9926 2.0992 1761157438 3214749 42 6 51 247 SRX5356508 Unrestricted 12.27 Metatranscriptome 3300008316 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.5.4LN.15dpc CCME-COLORADO 3300008316 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 14046392 48547 61 1 640 11 0.0 Metatranscriptome 3300019102 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Eukaryotic communities of water from different depths collected during the Tara Oceans expedition - TARA_N000000616 (ERX1782448-ERR1712220) Genoscope 3300019102 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ocean water 28398094 79648 28 19 107 352 ERX1782448, ERX1086442, ERX1782105 0.0 Metatranscriptome 3300004260 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor, Time E -22min-Aerobic_ RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004260 Metatranscriptome Analysis megahit v. 0.2.0 No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 311068128 644393 278 1001 666 3117 SRX2518190 Unrestricted 0.0 Metatranscriptome 3300045463 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P24SSC2_190915_i (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300045463 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 89225239 226489 180 329 1474 1499 SRX20650857 Unrestricted 141.24 Metatranscriptome 3300046254 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_2_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046254 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 48178133 91564 4 29 88 185 Restricted 268.95 Metatranscriptome 3300018922 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_128 - TARA_N000002289 (ERX1789394-ERR1719405) Canada's Michael Smith Genome Sciences Centre 3300018922 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine 0.0003 -153.6759 266866178 759368 20 32 63 311 0.0 Metatranscriptome 3300013310 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES153 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013310 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 129085352 278195 194 372 1958 5847 SRX3011212 Unrestricted 0.0 Metatranscriptome 3300017353 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Gulf of Mexico in L1 medium, 22 C, 32 psu salinity and 684 ?mol photons light - Scrippsiella trochoidea CCMP 3099 (MMETSP0270) National Center for Genome Resources 3300017353 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 27.3122 -82.601 103913310 127560 7 3 11 1 0.0 Metatranscriptome 3300010079 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_4_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010079 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 34523745 80650 150 572 16108 5510 Unrestricted 0.0 Metatranscriptome 3300032742 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Shad11_24May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032742 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 679471091 1227074 16 8 30 153 SRX6411420 Unrestricted 0.0 Metatranscriptome 3300004295 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 18 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004295 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 118067558 373517 4897 2079 17525 4202 Unrestricted 0.0 Metatranscriptome 3300007610 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S15 Surf_A metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007610 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 129798274 414174 798 1953 2271 6579 SRX3787150 Unrestricted 0.0 Metatranscriptome 3300059660 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 161R_SW_T3_R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059660 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 100274431 250897 301 247 1121 1377 Unrestricted 63.45 Metatranscriptome 3300038287 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_N3_C1_D6_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038287 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 90287005 201967 219 438 6037 1294 SRX9391581 Unrestricted 67.91 Metatranscriptome 3300019250 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019250 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 3.8381 -73.3194 213222950 496920 1011 616 112235 3646 SRX3936991 Unrestricted 0.0 Metatranscriptome 3300018735 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001565 (ERX1399747-ERR1328127) Canada's Michael Smith Genome Sciences Centre 3300018735 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 36.1715 -29.023 99294774 312351 131 56 265 878 0.0 Metatranscriptome 3300037259 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Growout1_04 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037259 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 463076534 967194 828 46 1456 1093 SRX9167789 Unrestricted 19.51 Metatranscriptome 3300002587 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS903_80_13L 3300002587 Metatranscriptome Analysis released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 1419738 4602 245 2 333 5 0.0 Metatranscriptome 3300019218 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR3_MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019218 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 36.29 139.38 155877756 324218 12 32 11583 226 SRX3903409 Unrestricted 0.0 Metatranscriptome 3300018871 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_085 - TARA_N000001026 (ERX1789475-ERR1719345) Canada's Michael Smith Genome Sciences Centre 3300018871 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -62.2231 -49.2139 213922380 537989 37 19 68 233 0.0 Metatranscriptome 3300041904 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_400 MetaT_extra_run AgResearch, New Zealand, Mosgeil 3300041904 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 304443 610 44 91 186 76 0.0 Metatranscriptome 3300016826 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 14 C, 36 psu salinity and 153 ?mol photons light - Skeletonema menzellii CCMP 793 (MMETSP0603) National Center for Genome Resources 3300016826 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 41.566 -70.5842 24500653 24052 2 3 1 2 0.0 Metatranscriptome 3300008658 *Microbiome Permanent Draft Microbial communities of corn and soybean rhizosphere soil from Ohio, USA Microbial communities of corn rhizosphere soil from Ohio, USA - Corn_Powermax_2a Auburn University 3300008658 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Plants Rhizosphere Roots Soil Rhisosphere soil 6650486 25895 555 223 17821 2058 SRX1078298 0.0 Metatranscriptome 3300004518 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 130_HOW14 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004518 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 15217669 33710 261 14 738 49 SRX2725798 Unrestricted 0.0 Metatranscriptome 3300008610 *Microbiome Permanent Draft Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France - CSM2012-AB-A-N Centre National de la Recherche Scientifique (CNRS) 3300008610 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Microbial mats Freshwater lake 5052842 14539 178 153 1652 1430 SRX528794 0.0 Metatranscriptome 3300004550 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 111_LOW13 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004550 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 46354259 105545 82 627 149 836 SRX2725764 Unrestricted 0.0 Metatranscriptome 3300046564 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - P1-R1-A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046564 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.355 19.0438 80100540 199193 75 151 224 686 Unrestricted 113.52 Metatranscriptome 3300009831 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 2, 8m depth; RNA IDBA-UD Marine Biological Laboratory 3300009831 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 6.52 3072414 9336 470 60 3033 236 0.0 Metatranscriptome 3300029273 *Microbiome Permanent Draft Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Sorghum rhizosphere microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B1.stno.R1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300029273 Metatranscriptome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes colemanderr@gmail.com Devin Coleman-Derr No Host-associated Plants Rhizosphere Roots Unclassified sorghum rhizosphere 36.339058 -120.12031 17665579 32690 915 1146 5691 3292 0.0 Metatranscriptome 3300007574 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B_top_diel_T=1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007574 Metatranscriptome Analysis megahit v. 0.2.0 No Yes binskeep@montana.edu, binskeep@montana.edu; jim.fredrickson@pnnl.gov William Inskeep, William P. Inskeep; Jim Fredrickson No Environmental Aquatic Unclassified Thermal springs Unclassified Microbial mats 44.7219 -110.7021 14761933 41883 3249 1 4851 17 SRX5333038 Unrestricted 0.0 Metatranscriptome 3300017367 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Gulf of Mexico in L1 medium, 22 C, 32 psu salinity and 300 ?mol photons light - Karenia brevis CCMP 2229 (MMETSP0027) National Center for Genome Resources 3300017367 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 27.0171 -82.4763 101732829 135792 1 2 6 2 0.0 Metatranscriptome 3300010855 *Microbiome Permanent Draft Forest soil eukaryotic communities from Alaska, USA, for a soil warming experiment in a boreal forest Boreal forest soil eukaryotic communities from Alaska, USA - W1-5 Metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010855 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes treseder@uci.edu Kathleen Treseder No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Boreal forest soil 63.883 -145.733 105135479 228646 88 877 3340 4646 SRX3007282 Unrestricted 0.0 Metatranscriptome 3300049552 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_A_7_drought (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049552 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 77296695 193997 133 73 625 465 Unrestricted 233.33 Metatranscriptome 3300029655 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_5-13C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029655 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.3049 -116.2547 32681261 66551 170 198 701 1151 SRX5336448 Unrestricted 43.69 Metatranscriptome 3300018794 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_111 - TARA_N000001823 (ERX1782102-ERR1711992) Canada's Michael Smith Genome Sciences Centre 3300018794 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -16.9581 -100.6588 167532598 399951 8 40 51 430 0.0 Metatranscriptome 3300031124 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_140 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031124 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92028116 -106.94891893 90837214 208726 739 545 3083 2578 SRX8133073 Unrestricted 20.48 Metatranscriptome 3300046143 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-178 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046143 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4963 -64.2287 59325534 150387 497 32 834 254 Unrestricted 26.4 Metatranscriptome 3300046631 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-190 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046631 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4199 -64.1151 159493529 369289 595 29 1156 470 Unrestricted 18.25 Metatranscriptome 3300018713 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_068 - TARA_N000000703 (ERX1782432-ERR1712119) Canada's Michael Smith Genome Sciences Centre 3300018713 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -31.027 4.6802 117677517 281441 52 24 193 306 0.0 Metatranscriptome 3300024553 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepC_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024553 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 167511865 349918 54 158 979 1151 SRX4547804 Unrestricted 40.57 Metatranscriptome 3300043292 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Metatranscriptome of coal bed microbial communities from the Powder River Basin, Montana, United States - T0FG11RNAA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043292 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Aquatic Groundwater Deep subsurface Coalbed methane well water coal bed water 45.4351 -106.3918 112048429 235630 94 123 1480 311 SRX10088198 Unrestricted 348.93 Metatranscriptome 3300036550 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen2, Rep 1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036550 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 85148655 122847 5 0 61 1 SRX8382044 Unrestricted 65.67 Metatranscriptome 3300036109 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Metatranscriptome of forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_21 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036109 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 149596619 352005 3 74 282 352 SRX8240660 Unrestricted 95.39 Metatranscriptome 3300031086 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Litter GP-2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031086 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr; dcullen@wisc.edu Francis M. Martin; Daniel Cullen No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 45.755278 -113.910556 1644260991 4649276 1715 399 2834 764 SRX3343220 Unrestricted 0.0 Metatranscriptome 3300052464 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 111-S77Day28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052464 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 149688687 295873 23 6 97 43 Unrestricted 57.01 Metatranscriptome 3300060326 *Microbiome Permanent Draft Sediment microbial communities from the PNNL SFA Hanford 300 Area, Columbia River, WA, USA Metatranscriptome of sediment microbial communities from in situ POM Reactor at the PNNL SFA Hanford 300 Area, Columbia River, WA, USA - Shallow Ashed with POM (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300060326 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes eroden@geology.wisc.edu Eric Roden No Environmental Aquatic River Freshwater Sediment Sediment 46.467778 -119.464444 56350985 139145 251 171 526 870 Restricted 128.5 Metatranscriptome 3300013047 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched backyard soil microbial communities from Emeryville, California, USA - RNA 5th pass 37_C BE-Lig BY (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013047 Metatranscriptome Analysis megahit v. 1.0.6 No Yes jmgladden@lbl.gov John Gladden No Environmental Terrestrial Unclassified Soil Unclassified soil 37.83 -122.29 37825163 52327 7 9 60 1620 SRX4809048 Unrestricted 0.0 Metatranscriptome 3300050708 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae culture inoculated with mixed bacterial community from LLNL, Livermore, California, USA - f24_d7_A_S50 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050708 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 22060245 37330 4 0 5 5 Restricted 32.02 Metatranscriptome 3300010140 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_24_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010140 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 118624289 286138 76 506 10700 4476 Unrestricted 0.0 Metatranscriptome 3300008851 *Microbiome Permanent Draft Microbial communities from dairy cow rumen, for metatranscriptome studies Microbial communities from dairy cow rumen, for metatranscriptome studies - 6021_control diet Aarhus University 3300008851 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Stomach Digestive system Rumen Holstein breed cow rumen 25938558 126584 591 81 7364 253 SRX196409 0.0 Metatranscriptome 3300004810 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004810 Metatranscriptome Analysis megahit v. 0.2.0 No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 538290510 1585363 2884 1448 8173 7871 SRX2518348 Unrestricted 0.0 Metatranscriptome 3300030644 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 21_T2E_StrEL1 developmental time series (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030644 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 33691214 42937 17 16 235 375 SRX4646386 Unrestricted 0.0 Metatranscriptome 3300031590 *Microbiome Permanent Draft Hardwood forest soil microbial communities from various locations in the United States Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031590 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jdraff@indiana.edu Jonathan Raff No Environmental Terrestrial Temperate forest Soil Bulk soil hardwood forest soil 39.0844 -86.4705 77368601 187450 6 137 68 852 SRX5649054 Unrestricted 0.0 Metatranscriptome 3300031484 *Microbiome Permanent Draft Soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031484 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thb15@psu.edu Terrence Bell No Engineered Artificial ecosystem Surface biofilm Soil microcosm Unclassified soil 40.7997 -77.8629 23322151 51454 157 52 645 480 SRX5812305 Unrestricted 246.36 Metatranscriptome 3300000087 *Microbiome Draft Blue grama grass rhizosphere eukaryotic and microbial communities from Sevilleta Long Term Ecological Research site, New Mexico, US Blue grama grass rhizosphere microbial communities from Sevilleta, New Mexico, USA - RHZ soil N,W,P treatment plot 28 DOE Joint Genome Institute (JGI) 3300000087 Metatranscriptome Analysis No Yes ajpowel@gmail.com Amy Powell Yes 26279186 Host-associated Plants Rhizosphere Roots Soil Blue grama grass rhizosphere 34.3348 -106.631 0 0 0 0 0 0 0.0 Metatranscriptome 3300020211 *Microbiome Permanent Draft Metatranscriptome of freshwater microbial communities within cyanobacterial aggregates from lake Taihu, China Freshwater microbial communities within cyanobacterial aggregates from lake Taihu, China - 10_3_12:00 total sequence Beijing Novogene Bioinformatics Technology Co., Ltd 3300020211 Metatranscriptome Analysis trinity v2.4 released by JGI data releasing policy No Yes hycai@niglas.ac.cn haiyuan cai No Environmental Aquatic Lake Freshwater Unclassified freshwater 31.3 120.11 76329084 165767 99 42 60 355 0.0 Metatranscriptome 3300041863 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_46 MetaT AgResearch, New Zealand, Mosgeil 3300041863 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 12480100 25630 88 96 597 171 0.0 Metatranscriptome 3300055069 *Microbiome Permanent Draft Acid mine drainage microbial communities from coal mines in Pennsylvania and Ohio, United States Metatranscriptome of lab enriched acid mine drainage microbial communities from Akron, Ohio, USA - WFP3_21D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055069 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes shagun2260@gmail.com Shagun sharma No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage acid mine drainage 41.07755 -81.511441 22155081 34560 83 70 384 398 Restricted 190.35 Metatranscriptome 3300037022 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Growout1_16 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037022 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 437759082 934684 679 66 1307 1097 SRX8821529 Unrestricted 24.35 Metatranscriptome 3300018678 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_131 - TARA_N000002350 (ERX1782149-ERR1712036) Canada's Michael Smith Genome Sciences Centre 3300018678 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 22.7901 -157.9439 108910996 241783 50 53 248 1339 0.0 Metatranscriptome 3300008373 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34695 J. Craig Venter Institute (JCVI) 3300008373 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 15114 25 0 0 0 0 0.0 Metatranscriptome 3300016788 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, no silica, at 16 C, 34 psu salinity and 611 ?mol photons light - Isochrysis sp. CCMP 1324 (MMETSP1130) National Center for Genome Resources 3300016788 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 10260723 17844 17 10 27 17 0.0 Metatranscriptome 3300004973 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 19 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004973 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 114587903 355161 5942 1660 20862 3951 Unrestricted 0.0 Metatranscriptome 3300032402 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - P4_Day56_Rep3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032402 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass growth medium 37.8406 -122.2901 7762895 15257 11 0 80 3 SRX7582817 Unrestricted 87.29 Metatranscriptome 3300036412 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of sediment eukaryotic communities from Prado wetlands, California, USA - CSM_Prado_Oct18_PM_0.5z2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036412 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 113095822 215300 12 14 51 44 SRX8737676 Unrestricted 140.84 Metatranscriptome 3300017554 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in ATCC 1651 MA medium w/o phosphatidylcholine, 4 C, 30 psu salinity and 145 ?mol photons light - Anophryoides haemophila AH6 (MMETSP1018) (SRX549047-SRR1294433) National Center for Genome Resources 3300017554 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 43.51667 -65.6 9061041 14467 26 2 60 3 0.0 Metatranscriptome 3300010908 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS6_55_TP1_12H Marine Biological Laboratory 3300010908 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 1053355 3299 53 1 195 5 0.0 Metatranscriptome 3300021921 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from Norwegian Sea - 10m ARK-5M ARK-5-3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021921 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 95329098 224164 45 49 115 211 SRX3336647 Unrestricted 0.0 Metatranscriptome 3300046125 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-184 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046125 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4963 -64.2287 17125270 40948 137 22 235 411 Unrestricted 27.74 Metatranscriptome 3300026407 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 49R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026407 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 98468904 179256 110 25 163 287 SRX4795901 Unrestricted 31.11 Metatranscriptome 3300032915 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_07AUG2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032915 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.372 207553837 376699 104 67 171 466 SRX7519784 Unrestricted 57.39 Metatranscriptome 3300021328 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States - R877 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021328 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 46.217 -123.781 147281278 358912 179 257 2469 3555 SRX4015221 Unrestricted 0.0 Metatranscriptome 3300030785 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 5C (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030785 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 494985277 1549625 18140 1302 40120 3947 SRX2752863 Unrestricted 0.0 Metatranscriptome 3300042570 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Metatranscriptome of estuarine water microbial communities from San Francisco Bay, California, United States - Oct18_FB_1_27S (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042570 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 37.6183 -122.2916 32986861 72334 170 96 343 716 Unrestricted 38.58 Metatranscriptome 3300031047 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1B (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031047 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr; dcullen@wisc.edu Francis M. Martin; Daniel Cullen No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 45.7544 -113.9094 764699111 2318405 10967 657 17618 1977 SRX3342568 Unrestricted 0.0 Metatranscriptome 3300005637 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling - Hofmockel_1000056-3 ISU MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005637 Metatranscriptome Analysis megahit v. 0.2.0 No Yes khof@iastate.edu, kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Agricultural land Soil Unclassified Enriched soil aggregate 42.0266187 -93.6486594 85386047 214726 259 87 1082 231 SRX3195284 Unrestricted 0.0 Metatranscriptome 3300056988 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Frasne, France - Sphagnum fallax 2OTC_SF_FR (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056988 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 173489493 368582 213 120 407 575 Unrestricted 65.94 Metatranscriptome 3300008596 *Microbiome Permanent Draft Microbial communities of saline water collected from the North Sea in Germany Microbial communities of saline water collected from the North Sea in Germany - HE327_6 Goettingen Genomics Laboratory 3300008596 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified North sea 54.4542 8.0018 3449994 13595 276 373 1920 1711 0.0 Metatranscriptome 3300048532 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 8195917a-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048532 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 133523105 339466 176 193 1554 1152 Unrestricted 27.56 Metatranscriptome 3300008937 *Microbiome Permanent Draft Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica - 3C J. Craig Venter Institute (JCVI) 3300008937 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ice edge, McMurdo Sound, Antarctica -77.36 164.28 118268750 334629 21 7 69 69 0.0 Metatranscriptome 3300035624 *Microbiome Permanent Draft Sediment microbial communities from Lake Washington near Medina, WA, United States Metatranscriptome of methane-enriched sediment microbial communities from Lake Washington, WA, United States - LO-NA-1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035624 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment sediment 47.6215 -122.2558 30072245 49137 4 1 8 3 SRX8380041 Unrestricted 480.39 Metatranscriptome 3300035299 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R1103S02 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300035299 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0387 95003714 200655 597 1613 6360 5321 SRX9139976, SRX9139977 Unrestricted 0.0 Metatranscriptome 3300012744 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES020 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012744 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 47484739 99747 199 61 2992 1837 SRX3527134 Unrestricted 0.0 Metatranscriptome 3300032119 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic - CSE5 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300032119 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 49.0448 13.618 58816943 138917 159 106 2219 804 SRX4455247, SRX5243323 Unrestricted 0.0 Metatranscriptome 3300024564 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepC_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024564 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 252472921 511489 52 134 618 1045 SRX4547614 Unrestricted 21.33 Metatranscriptome 3300006699 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP2156 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006699 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 12.0 -108.08 70816377 221874 1373 3990 4184 10661 SRX3299572 Unrestricted 0.0 Metatranscriptome 3300018675 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_123 - TARA_N000001994 (ERX1789575-ERR1719413) Canada's Michael Smith Genome Sciences Centre 3300018675 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.8984 -140.3089 85745221 233343 41 42 115 472 0.0 Metatranscriptome 3300052453 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 128-Pos ControlDay7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052453 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 77012307 157180 22 0 63 9 Unrestricted 54.48 Metatranscriptome 3300017144 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 20 C, 35 psu salinity and 735 ?mol photons light - Hemiselmis rufescens PCC563 (MMETSP1357) National Center for Genome Resources 3300017144 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 31214218 46730 14 13 10 15 0.0 Metatranscriptome 3300016785 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in F/2 medium with silicate, 1mM nitrate, 200uM acetate, at 15 C, 35 psu salinity and 237 ?mol photons light - Amphora coffeaeformis CCMP 127 (MMETSP0316) National Center for Genome Resources 3300016785 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 15426167 17596 2 2 1 9 0.0 Metatranscriptome 3300037719 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of photosynthetic mat microbial communities from Mushroom Spring, YNP, Wyoming, United States - 20090730 0740 sample R9cd (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037719 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 101263447 242604 0 1 51 0 SRX9378941 Unrestricted 251.84 Metatranscriptome 3300017267 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Gulf of California (Sea of Cortes) in ASW medium, resuspended in ASW with 2.5 mg/L nocodazole, 20 C and 204 ?mol photons light - Extubocellulus spinifer CCMP 396 (MMETSP0699) National Center for Genome Resources 3300017267 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 31.3172 -113.56 39716199 47039 10 6 29 18 0.0 Metatranscriptome 3300037640 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_M1_C3_D1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037640 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 71548125 138377 363 2002 3121 6353 SRX9383807 Unrestricted 141.99 Metatranscriptome 3300042529 *Microbiome Permanent Draft Biological soil crust microbial communities from Mojave Desert, California, United States Metatranscriptome of biological soil crust microbial communities from Mojave Desert, CA, USA - CLC_S1_50hours_MT_FICUS_504271 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042529 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes erik@olemiss.edu Erik Hom No Environmental Terrestrial Soil crust Soil Biological biological soil crusts 34.1736 -115.3888 51954249 108928 410 258 2955 1230 Unrestricted 63.32 Metatranscriptome 3300012688 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES030 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012688 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 133452777 253501 82 67 307 3081 SRX3527331 Unrestricted 0.0 Metatranscriptome 3300046607 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-90 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046607 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4413 -64.1645 90741377 218081 783 33 1249 507 Unrestricted 15.95 Metatranscriptome 3300041854 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_16 MetaT AgResearch, New Zealand, Mosgeil 3300041854 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 27209830 56394 206 117 1582 310 0.0 Metatranscriptome 3300032751 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Plim5_26May_deep (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032751 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 719202490 1260662 14 6 23 153 SRX6411378 Unrestricted 0.0 Metatranscriptome 3300024485 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepC_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024485 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 209596574 436631 61 115 734 930 SRX4547633 Unrestricted 25.29 Metatranscriptome 3300029596 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Arg2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029596 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 35029541 69459 3 8 132 33 SRX5356184 Unrestricted 51.98 Metatranscriptome 3300036515 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen9, Rep 3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036515 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 71073995 100780 4 0 102 0 SRX8382703 Unrestricted 104.8 Metatranscriptome 3300050705 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae axenic culture microbial communities from LLNL, Livermore, California, USA - f30_d5_W_S45 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050705 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 16817784 23553 3 0 0 2 Restricted 58.05 Metatranscriptome 3300018557 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS694_3p0 J. Craig Venter Institute (JCVI) 3300018557 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 5117345 23546 8 14 69 204 0.0 Metatranscriptome 3300010109 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_0_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010109 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 67096479 156969 64 568 3080 4929 Unrestricted 0.0 Metatranscriptome 3300008032 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Puerto Morelos, Mexico - Diporia T C metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300008032 Metatranscriptome Analysis megahit v. 0.2.0 No Yes momedinamunoz@gmail.com Monica _ Medina, Medina Medina No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral host 20.8778 -86.8431 320503343 495668 107 202 375 647 SRX3362344 Unrestricted 0.0 Metatranscriptome 3300036533 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp01_T0_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036533 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 217080402 473332 1245 187 2307 2070 SRX8842588 Unrestricted 27.52 Metatranscriptome 3300048096 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P11SSC1_191119_i (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048096 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 71369651 166950 70 249 1791 1362 SRX20649946 Unrestricted 125.42 Metatranscriptome 3300024530 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepB_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024530 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 147953134 272152 38 166 377 798 SRX4547649 Unrestricted 27.73 Metatranscriptome 3300056985 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Frasne, France - Sphagnum fallax 4C_SF_FR (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056985 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 254757425 547552 217 100 402 542 Unrestricted 55.84 Metatranscriptome 3300031459 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E5_Q_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031459 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 577198846 1563950 487 253 868 461 SRX3341241 Unrestricted 0.0 Metatranscriptome 3300028270 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0944-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028270 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 248203853 427145 21 10 11 64 SRX5244912 Unrestricted 59.74 Metatranscriptome 3300019072 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from deep sea water colum in Eastern Mediterranean Sea Metatranscriptome of marine microbial communities from deep sea water colum in Eastern Mediterranean Sea - KM3-S Woods Hole Oceanographic Institution 3300019072 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 36.29 15.39 16926353 40106 346 134 995 237 0.0 Metatranscriptome 3300052326 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_7A1_100318_0320 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052326 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@dbi.udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 52800977 132304 447 433 1084 1575 Unrestricted 194.53 Metatranscriptome 3300010905 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_8_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010905 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 75227724 175944 96 644 9202 4845 Unrestricted 0.0 Metatranscriptome 3300006702 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP1138 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006702 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -29.63 92.98 71829020 238758 1675 4190 4497 9616 SRX3299445 Unrestricted 0.0 Metatranscriptome 3300048681 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Metatranscriptome of soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR13 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048681 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.3476 -119.2808 88342564 155599 24 0 92 21 Unrestricted 42.27 Metatranscriptome 3300021325 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States - R1033 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021325 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 46.216 -123.951 229406733 512495 269 688 4285 5818 SRX4015263 Unrestricted 0.0 Metatranscriptome 3300046128 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-204 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046128 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4199 -64.1151 72052915 171396 324 14 519 297 Unrestricted 14.81 Metatranscriptome 3300032918 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_05JUN2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032918 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3941 -85.3741 54159075 90248 19 11 44 56 SRX7519507 Unrestricted 53.76 Metatranscriptome 3300036499 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10SP15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036499 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 81252524 168069 475 1633 2626 5633 SRX8378995 Unrestricted 35.34 Metatranscriptome 3300030788 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E6_R_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030788 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 563526231 1747268 1080 580 1971 1435 SRX3341605 Unrestricted 0.0 Metatranscriptome 3300005251 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1700_T MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005251 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 90134575 226586 81 1 377 9 SRX2521355, SRX2521356 Unrestricted 0.0 Metatranscriptome 3300022232 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from Cavitermes sp. nest - French Guiana - 28-9 mRNA University of Luxembourg 3300022232 Metatranscriptome Analysis CLC Genomics Workbench Version 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 5.3055556 -53.22805556 156154427 538885 1 11 13 32 0.0 Metatranscriptome 3300012407 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_16_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012407 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 208586679 505090 67 688 7043 5951 Unrestricted 0.0 Metatranscriptome 3300026431 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0923-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026431 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 159671951 263283 13 4 14 23 SRX4796198 Unrestricted 75.25 Metatranscriptome 3300004515 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 112_LOW13 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004515 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 14423730 30297 102 21 919 21 SRX2780190 Unrestricted 0.0 Metatranscriptome 3300008655 *Microbiome Permanent Draft Microbial communities of corn and soybean rhizosphere soil from Ohio, USA Microbial communities of soybean rhizosphere soil from Ohio, USA - Soybean_Control_1a Auburn University 3300008655 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Plants Rhizosphere Roots Soil Rhisosphere soil 8367768 32423 767 298 21344 2363 SRX1078292 0.0 Metatranscriptome 3300017027 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in H/2 medium, no silicate, at 23 C, 0 psu salinity and 696 ?mol photons light - Hanusia phi CCMP 325 (MMETSP1048) National Center for Genome Resources 3300017027 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 29989720 37286 2 5 4 8 0.0 Metatranscriptome 3300018817 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_038 - TARA_N000000030 (ERX1789390-ERR1719248) Canada's Michael Smith Genome Sciences Centre 3300018817 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 19.0284 64.5126 185988397 437750 8 7 37 201 0.0 Metatranscriptome 3300023542 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic - CSI4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023542 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 49.0427 13.6161 8428466 17991 79 162 1916 873 SRX4455187 Unrestricted 73.42 Metatranscriptome 3300021228 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from nest - French Guiana - 23-5 mRNA SA University of Luxembourg 3300021228 Metatranscriptome Analysis CLC Genomics Workbench Version 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 5.06224 -53.047407 48964745 183261 1 9 3 55 0.0 Metatranscriptome 3300008308 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.1ob.12.15dpc CCME-COLORADO 3300008308 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 12178057 43882 46 4 622 8 0.0 Metatranscriptome 3300018603 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_067 - TARA_N000000756 (ERX1782239-ERR1711906) Canada's Michael Smith Genome Sciences Centre 3300018603 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -32.2401 17.7103 56984340 135331 99 12 261 293 0.0 Metatranscriptome 3300008901 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of annulated tree boas from Steinhart Aquarium in San Francisco, USA - CAS02_Kidney University of California, San Francisco 3300008901 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Kidney Urinary system Unclassified Kidney 3660027 10538 0 0 0 1 SRX170623 0.0 Metatranscriptome 3300018738 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_137 - TARA_N000002938 (ERX1789371-ERR1719226) Canada's Michael Smith Genome Sciences Centre 3300018738 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 14.1957 -116.7293 124752411 317636 1 33 17 335 0.0 Metatranscriptome 3300003479 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from the University of North Carolina, USA - metaT NBMF1_06_lowP_mix1_d1 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003479 Metatranscriptome Analysis rnnotator v. 3.3.1 Reverted to private per Tijana Glavina del Rio (Oct 2014) No Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9082 -79.0499 62731979 95460 1 0 1 0 SRX3330372, SRX3330371 Unrestricted 0.0 Metatranscriptome 3300012881 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Gel_02_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012881 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Wastewater, Bioreactor Digestate Anaerobic digestor Unclassified Anaerobic digestor sludge 40.1191 -88.1952 174223573 440549 394 286 1323 602 SRX3196584 Unrestricted 0.0 Metatranscriptome 3300019215 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA - AD_STIC12_MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019215 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 41.84 -87.68 158492108 350739 115 288 13609 2147 SRX3903406 Unrestricted 0.0 Metatranscriptome 3300046553 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_1_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046553 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 39211031 57366 1 0 18 0 Restricted 200.03 Metatranscriptome 3300047339 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_3_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047339 Metatranscriptome Analysis megahit v. 2021-08-26 09:54:13 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated, Environmental Arthropoda, Terrestrial Insects nest Ant dump, Nest Nest dump ant dump 43.0765 -89.412 163249150 217954 3 0 17 0 Restricted 104.82 Metatranscriptome 3300048972 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 60 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048972 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.6663 -82.0816 14346332 22854 32 20 67 131 Restricted 73.75 Metatranscriptome 3300008577 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-6 University of Hawaii 3300008577 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 1086171 1749 1 0 97 11 0.0 Metatranscriptome 3300005500 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0400 MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005500 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 66503397 161245 1791 178 5789 373 SRX2524381, SRX2524382 Unrestricted 0.0 Metatranscriptome 3300008866 *Microbiome Permanent Draft Microbial communities from harbor seals stranded along the coast of California, USA Microbial communities from harbor seals stranded along the coast of California, USA - com7 Oregon State University 3300008866 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Brain Nervous system Unclassified Harbor seal brain 37.8592 -122.4853 401579477 726415 0 2 150 18 ERX1190727 0.0 Metatranscriptome 3300019233 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019233 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 172791414 409365 327 1471 35262 10909 SRX3939827 Unrestricted 0.0 Metatranscriptome 3300004499 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 82 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004499 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 40428587 124760 19146 1520 44598 3193 Unrestricted 0.0 Metatranscriptome 3300012372 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012372 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 100412013 233680 101 661 4660 6652 Unrestricted 0.0 Metatranscriptome 3300043784 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA10 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043784 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Unclassified Soil Unclassified soil 35.7877 -78.6442 15682660 34579 154 315 1700 2125 Unrestricted 69.05 Metatranscriptome 3300028329 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Washington, United States - R1276 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028329 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary water 46.184 -123.182 92646699 185353 135 216 182 928 SRX4821911 Unrestricted 0.0 Metatranscriptome 3300011042 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 76 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011042 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 26868635 63880 84 429 4092 1210 Unrestricted 0.0 Metatranscriptome 3300004140 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF224 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004140 Metatranscriptome Analysis megahit v. 0.2.0 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.531427 -72.189946 133454497 486114 1232 606 5227 2347 SRX2013931 Unrestricted 0.0 Metatranscriptome 3300046257 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_2_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046257 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 43256225 76800 3 25 85 114 Restricted 254.49 Metatranscriptome 3300001209 *Microbiome Permanent Draft Contaminated soil microbial communities from Tipperary, Ireland, in a timber treatment facility Contaminated soil microbial communities from Tipperary, Ireland - enriched with phenanthrene, cDNA isolated at day 18 University of Liverpool 3300001209 Metatranscriptome Analysis released per JGI data release policy No Yes mardiana.mohd-ashaari@ucdconnect.ie Mardiana Mohd Ashaari No Environmental Terrestrial Unclassified Soil Contaminated Contaminated soil 52.512199 -8.226278 0 0 0 0 0 0 0.0 Metatranscriptome 3300030826 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T31 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030826 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 21249639 40002 117 71 215 448 SRX5794687 Unrestricted 23.69 Metatranscriptome 3300046582 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-82 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046582 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.447 -64.1642 46604770 118538 500 14 811 196 Unrestricted 36.34 Metatranscriptome 3300010858 *Microbiome Permanent Draft Forest soil eukaryotic communities from Alaska, USA, for a soil warming experiment in a boreal forest Boreal forest soil eukaryotic communities from Alaska, USA - C3-2 Metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010858 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes treseder@uci.edu Kathleen Treseder No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Boreal forest soil 63.883 -145.733 146149168 327581 336 403 23131 3486 SRX3007247 Unrestricted 0.0 Metatranscriptome 3300029658 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Lys1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029658 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 44067015 86499 9 1 112 3 SRX5356197 Unrestricted 58.77 Metatranscriptome 3300004533 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 92_HOW11 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004533 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 28677976 69829 111 81 386 122 SRX2780165 Unrestricted 0.0 Metatranscriptome 3300046567 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - P2-R3-B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046567 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.357 19.047 176930900 410422 130 236 540 969 Unrestricted 15.13 Metatranscriptome 3300018636 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_122 - TARA_N000001943 (ERX1782245-ERR1711897) Canada's Michael Smith Genome Sciences Centre 3300018636 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.996 -139.2815 66076871 178526 110 33 453 586 0.0 Metatranscriptome 3300023566 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 18R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023566 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 59577661 130543 91 35 431 771 SRX4474451 Unrestricted 30.08 Metatranscriptome 3300041907 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaT_extra_run AgResearch, New Zealand, Mosgeil 3300041907 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Unclassified Roots Unclassified White clover root -43.648506 172.343549 35701509 58516 302 296 1305 592 0.0 Metatranscriptome 3300039339 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20051001_1200_MSP12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300039339 Metatranscriptome Analysis MEGAHIT v. 1.2.9 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 167767718 347197 1 0 86 10 SRX8254420, SRX8254419 Unrestricted 0.0 Metatranscriptome 3300046421 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_5E_Control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046421 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1954 -81.3646 26492477 61015 171 186 1225 935 Unrestricted 61.04 Metatranscriptome 3300030539 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO151-VCO111SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030539 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.318 -71.1037 271996811 616269 102 158 1980 1990 SRX4011341 Unrestricted 0.0 Metatranscriptome 3300017330 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from South Atlantic Ocean in Standard Aquil medium with 100 uM EDTA, 4 C, 32 psu salinity and 128 ?mol photons light - Fragilariopsis kerguelensis L26-C5 (MMETSP0733) National Center for Genome Resources 3300017330 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -48.0 -16.0 46126334 63021 3 1 3 2 0.0 Metatranscriptome 3300010020 *Microbiome Permanent Draft Black Band Disease transitions Microbial communities of stony corals with Black-band disease (BBD) from Carrie Bow Cay Field Station, Belize; BBD Transitions coral #2 sample T2 University of Maryland 3300010020 Metatranscriptome Analysis IDBA-Tran v1.1.1 released per JGI data release policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified marine 16.80288 -88.08213 260136741 442233 3 11 14 58 0.0 Metatranscriptome 3300046289 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_5_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046289 Metatranscriptome Analysis megahit v. 2021-06-25 00:38:00 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated, Environmental Arthropoda, Terrestrial Insects nest Ant dump, Nest Nest dump ant dump 43.0765 -89.412 148752878 214761 1 0 32 1 Restricted 119.53 Metatranscriptome 3300030016 *Microbiome Permanent Draft North Pond metatranscriptomes Metatranscriptome of crustal fluid microbial communities from North Pond, Mid-Atlantic Ridge, Atlantic Ocean - 1382A 2014 resub Marine Biological Laboratory 3300030016 Metatranscriptome Analysis IDBA-UD v. 1.1.2 released by JGI data releasing policy No Yes lmseyler@gmail.com Lauren Seyler No Environmental Aquatic Oceanic Marine Unclassified Oceanic crustal fluids 22.75 -46.083 8136276 10613 1562 263 3614 380 0.0 Metatranscriptome 3300006442 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling - Hofmockel_1000068-3 ISU MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006442 Metatranscriptome Analysis megahit v. 0.2.0 No Yes khof@iastate.edu, kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Agricultural land Soil Unclassified Enriched soil aggregate 42.0266187 -93.6486594 19613296 50254 152 49 797 96 SRX3195390 Unrestricted 0.0 Metatranscriptome 3300002584 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS903_80_13H 3300002584 Metatranscriptome Analysis released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 943506 2910 34 1 288 4 0.0 Metatranscriptome 3300038284 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_N3_C1_D1_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038284 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 129923532 277357 500 2529 4899 7236 SRX9391004 Unrestricted 95.56 Metatranscriptome 3300003531 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS903_Marker113_RNA 3300003531 Metatranscriptome Analysis CLC genomics workbench released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.92274 -129.988104 3671772 12790 243 16 1331 79 0.0 Metatranscriptome 3300032591 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_31MAY2016_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032591 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Unclassified Phyllosphere Unclassified phyllosphere 42.39 -85.37 177497665 310990 26 18 27 83 SRX7077522 Unrestricted 136.11 Metatranscriptome 3300008842 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_4068 Massachusetts Institute of Technology 3300008842 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 1323489 4049 0 3 206 412 0.0 Metatranscriptome 3300004506 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 70 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004506 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 44068828 154418 3392 1345 12704 3230 Unrestricted 0.0 Metatranscriptome 3300038166 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_OW2_C1_D6_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038166 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 23770498 48236 414 104 4860 289 SRX9390610 Unrestricted 236.6 Metatranscriptome 3300052739 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Weichs, Bavaria, Germany - PB8_MT_240418 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052739 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 48.39537892 11.44760761 18223774 40945 16 7 349 11 Unrestricted 0.0 Metatranscriptome 3300031127 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E5_X_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031127 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 549024183 1475407 341 265 628 593 SRX3341590 Unrestricted 0.0 Metatranscriptome 3300011066 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 3 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011066 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 64306473 158485 152 291 8913 1634 Unrestricted 0.0 Metatranscriptome 3300018797 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_100 - TARA_N000001622 (ERX1809762-ERR1740131) Canada's Michael Smith Genome Sciences Centre 3300018797 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -12.9214 -96.0953 203890073 401895 0 18 2 83 0.0 Metatranscriptome 3300046263 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_3_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046263 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 23771309 46480 1 0 16 1 Restricted 650.71 Metatranscriptome 3300017603 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in ASW medium, resuspended in ASW w/o silicate, 20 C, 29 psu salinity and 692 ?mol photons light - Chaetoceros curvisetus (MMETSP0717) (SRX549071-SRR1294457) National Center for Genome Resources 3300017603 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 32.9 -117.255 7731945 13937 4 1 5 1 0.0 Metatranscriptome 3300028185 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0669-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028185 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 253039543 449885 22 17 15 46 SRX5253531 Unrestricted 89.53 Metatranscriptome 3300017364 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 15 C, 31 psu salinity and 520 ?mol photons light - Pyrodinium bahamense pbaha01 (MMETSP0796) National Center for Genome Resources 3300017364 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 96157703 132483 7 1 9 2 0.0 Metatranscriptome 3300019206 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA - AD_STIC08_MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019206 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 41.84 -87.68 118134753 267644 134 232 23998 1541 SRX3903287 Unrestricted 0.0 Metatranscriptome 3300003303 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome C0912_C33A6_35 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003303 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 57712327 148394 353 31 878 936 SRX2555052 Unrestricted 0.0 Metatranscriptome 3300022721 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022721 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 321483746 731461 507 782 7743 5600 SRX4406621 Unrestricted 0.0 Metatranscriptome 3300023708 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17_Aug_MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023708 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 215204337 432228 334 1754 6197 11728 SRX4480124 Unrestricted 33.33 Metatranscriptome 3300018563 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS684_3p0 J. Craig Venter Institute (JCVI) 3300018563 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 16542098 64836 77 31 581 825 0.0 Metatranscriptome 3300049541 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_A_4_drought (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049541 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 122000211 308588 137 103 661 697 Unrestricted 90.02 Metatranscriptome 3300012520 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012520 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 37.5161 -76.1223 236450932 553506 49 265 3211 5106 SRX3007436 Unrestricted 0.0 Metatranscriptome 3300007205 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_T0_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007205 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 64925959 231294 7645 6979 22434 20741 SRX2752506, SRX2752505 Unrestricted 0.0 Metatranscriptome 3300031487 *Microbiome Permanent Draft Soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031487 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thb15@psu.edu Terrence Bell No Engineered Artificial ecosystem Surface biofilm Soil microcosm Unclassified soil 40.7997 -77.8629 22817758 45006 121 41 675 422 SRX5812420 Unrestricted 153.1 Metatranscriptome 3300030647 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 35_T1E_3212EL1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030647 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 93963287 120983 0 3 16 285 SRX4646567 Unrestricted 0.0 Metatranscriptome 3300017253 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Station Roscoff Astan in K medium with silica, 13 C, 21 psu salinity and 263 ?mol photons light - Cylindrotheca closterium KMMCC:B-181 (MMETSP0017_2) National Center for Genome Resources 3300017253 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 48.75 -3.95 40183774 41156 6 8 5 9 0.0 Metatranscriptome 3300012786 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES010 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012786 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 45758650 98149 219 79 4782 2152 SRX3526966 Unrestricted 0.0 Metatranscriptome 3300016979 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in ESAW medium with 100 uM nitrogen, at 25 C, 20 psu salinity and 729 ?mol photons light - Chattonella subsalsa CCMP 2191 (MMETSP0949) National Center for Genome Resources 3300016979 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 27378121 33471 6 7 3 14 0.0 Metatranscriptome 3300010916 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS6_55_TP1_13L Marine Biological Laboratory 3300010916 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 1652681 5069 147 4 347 10 0.0 Metatranscriptome 3300030920 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PO 1B (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030920 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 225319663 702086 6149 2187 13341 5540 SRX2752870 Unrestricted 0.0 Metatranscriptome 3300008440 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy - t30.CO.RNAseq.exp1 University of Naples 3300008440 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Cheese 29732 114 18 0 85 1 0.0 Metatranscriptome 3300013044 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013044 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil corn rhizosphere 42.3948 -85.3738 15510718 39415 60 370 9407 2882 SRX4062858, SRX4062857 Unrestricted 0.0 Metatranscriptome 3300052467 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 116-S78Day28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052467 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 152844772 319928 28 7 96 25 Unrestricted 50.35 Metatranscriptome 3300047413 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81956d08-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047413 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 219332325 546515 308 217 1688 1316 Unrestricted 50.14 Metatranscriptome 3300012747 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES063 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012747 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.041 -89.686 71765255 128070 53 39 1262 2063 SRX3010860 Unrestricted 0.0 Metatranscriptome 3300047435 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 819587ac-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047435 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 290100153 725677 373 245 1862 1513 Unrestricted 23.0 Metatranscriptome 3300008934 *Microbiome Permanent Draft Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica - 2C J. Craig Venter Institute (JCVI) 3300008934 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ice edge, McMurdo Sound, Antarctica -77.36 164.28 133648324 386149 34 9 79 72 0.0 Metatranscriptome 3300035627 *Microbiome Permanent Draft Sediment microbial communities from Lake Washington near Medina, WA, United States Metatranscriptome of methane-enriched sediment microbial communities from Lake Washington, WA, United States - LO-FA-2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035627 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment sediment 47.6215 -122.2558 82533163 134837 4 1 16 0 SRX8380050 Unrestricted 327.53 Metatranscriptome 3300004768 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.DN (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004768 Metatranscriptome Analysis megahit v. 0.2.0 No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 250838473 733624 1773 530 6133 2637 SRX2518376 Unrestricted 0.0 Metatranscriptome 3300005634 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling - Hofmockel_1000136-3 ISU MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005634 Metatranscriptome Analysis megahit v. 0.2.0 No Yes khof@iastate.edu, kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Agricultural land Soil Unclassified Enriched soil aggregate 42.0266187 -93.6486594 44108387 103497 221 208 1054 309 SRX3195504 Unrestricted 0.0 Metatranscriptome 3300031044 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031044 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 59.9992 10.7901 28475773 63622 144 210 541 1006 SRX5351403 Unrestricted 0.0 Metatranscriptome 3300004334 *Microbiome Permanent Draft Metatranscriptomics studies in sediment microbial communities from the mangroves in Sao Paulo, Brazil Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC4B 3300004334 Metatranscriptome Analysis IDBA released by JGI data releasing policy No Yes luc.g.cabral@gmail.com Luc?lia Cabral, Lucelia Cabral No Environmental Aquatic Intertidal zone Marine Mangrove sediment Mangrove sediment -23.8553 -46.1394 35705239 107453 1035 515 4193 1607 0.0 Metatranscriptome 3300046793 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Metatranscriptome of soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046793 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.3476 -119.2808 136009741 228347 36 12 101 55 Unrestricted 48.65 Metatranscriptome 3300030721 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB21_1117_20m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030721 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 74.0136 -139.5971 94133406 174775 126 27 158 583 SRX5651259 Unrestricted 17.89 Metatranscriptome 3300004642 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI047_10m_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004642 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 121722739 344617 1277 2147 2757 8793 Unrestricted 0.0 Metatranscriptome 3300058689 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP14.2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300058689 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 418582988 893459 60 76 353 358 Unrestricted 65.11 Metatranscriptome 3300026404 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0915-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026404 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 92006137 154631 14 25 32 35 SRX4796189 Unrestricted 54.63 Metatranscriptome 3300046181 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_3_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046181 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 71745784 122609 6 61 291 268 Restricted 171.76 Metatranscriptome 3300017282 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in 40 psu salinity and 653 ?mol photons light - Sorites sp. (MMETSP0191) National Center for Genome Resources 3300017282 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 51724232 87202 26 2 48 3 0.0 Metatranscriptome 3300061810 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 90_hairyvetch_3_T21 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061810 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 32487663 77591 75 45 481 444 Unrestricted 226.93 Metatranscriptome 3300036506 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5SB15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036506 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 187083108 387335 451 1771 2638 6658 SRX8379439 Unrestricted 38.38 Metatranscriptome 3300018589 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_102 - TARA_N000001664 (ERX1782130-ERR1711875) Canada's Michael Smith Genome Sciences Centre 3300018589 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -5.2692 -85.2121 43632593 96537 0 24 5 92 0.0 Metatranscriptome 3300003729 *Microbiome Permanent Draft Soil microbial communities from four geographically distinct crusts in the Colorado Plateau and Sonoran desert Soil microbial communities from Colorado Plateau, Utah, USA - Soil Crust after wet up 3C (Custom Analysis) DOE Joint Genome Institute (JGI) 3300003729 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes elbrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Desert Soil Unclassified Soil 38.42 -109.4099 12179898 26363 457 191 1406 413 Unrestricted 0.0 Metatranscriptome 3300017557 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of freshwater eukaryotic communities from Lake Texoma, Oklahoma in f/2 medium with seawater, 18 C, 18 psu salinity and 200 ?mol photons light - Prymnesium parvum Texoma1 (MMETSP0008_2) (SRX549026-SRR1294412) National Center for Genome Resources 3300017557 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 33.98 -96.67 32926771 40379 24 8 47 13 0.0 Metatranscriptome 3300022509 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-O (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022509 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 134754122 315959 600 753 10118 5303 SRX4402543 Unrestricted 0.0 Metatranscriptome 3300017249 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Baffin Bay in ProV 50 medium with seawater and antibiotics, 6 C, 36 psu salinity and 181 ?mol photons light - unclassified eukaryote CCMP 2436 (MMETSP0985) National Center for Genome Resources 3300017249 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 76.3208 -75.8172 33895218 40933 12 10 28 21 0.0 Metatranscriptome 3300018542 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS677_3p0 J. Craig Venter Institute (JCVI) 3300018542 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 58.581234 18.232801 4219165 13643 72 35 635 781 0.0 Metatranscriptome 3300052456 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 10-S25Day28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052456 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 211671874 418031 37 10 142 61 Unrestricted 81.57 Metatranscriptome 3300005389 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1800_B MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005389 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 23324921 66453 961 4 2172 17 SRX2521669, SRX2521668 Unrestricted 0.0 Metatranscriptome 3300050367 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T2_3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050367 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 173600034 299195 24 20 88 76 Unrestricted 131.64 Metatranscriptome 3300026460 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 85R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026460 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 216471443 398682 96 16 145 378 SRX4796133 Unrestricted 20.93 Metatranscriptome 3300007235 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 10/23/14 D RNA (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007235 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ebyoung@uwm.edu Erica Young, Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 459911259 1199580 1428 1587 4015 6456 SRX5628754 Unrestricted 0.0 Metatranscriptome 3300016848 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in NEPC medium, at 20 C, 30 psu salinity and 765 ?mol photons light - Chaetoceros neogracile CCMP 1317 (MMETSP0751) National Center for Genome Resources 3300016848 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 29193536 25626 18 3 28 6 0.0 Metatranscriptome 3300010092 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_4_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010092 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 53804501 125951 222 783 19216 6527 Unrestricted 0.0 Metatranscriptome 3300026495 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 24R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026495 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 257234975 553098 194 36 270 457 SRX4783593 Unrestricted 23.54 Metatranscriptome 3300003250 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment ColumnT-4K6-0 454 Life Sciences 3300003250 Metatranscriptome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.342219 40.479289 6-8 0 0 0 0 0 0 0.0 Metatranscriptome 3300007213 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S7 NT10 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007213 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 104175338 269295 1512 5144 4988 13095 SRX3196625 Unrestricted 0.0 Metatranscriptome 3300017085 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater and 14nM iron, 19 C, 35 psu salinity and 646 ?mol photons light - Thalassiosira weissflogii CCMP 1010 (MMETSP1422) National Center for Genome Resources 3300017085 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.0 -65.0 30480751 31522 1 4 1 9 0.0 Metatranscriptome 3300048093 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P11SSC1_190916_f (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048093 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 137041284 323252 189 359 2712 1973 SRX20649962 Unrestricted 115.39 Metatranscriptome 3300036536 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Metatranscriptome of soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_July_plot1_rep1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036536 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6539 -80.6288 178328350 412716 431 212 1935 1598 SRX8186428 Unrestricted 28.59 Metatranscriptome 3300026434 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 53R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026434 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 147421932 279770 116 12 150 265 SRX4795954 Unrestricted 35.82 Metatranscriptome 3300054995 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T2_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300054995 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 58038417 111009 58 20 162 123 Unrestricted 0.0 Metatranscriptome 3300030845 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA7 Emin (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030845 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7184 6.3471 458081748 1171255 4908 994 9933 2675 SRX3351897 Unrestricted 0.0 Metatranscriptome 3300005363 *Microbiome Permanent Draft Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, for analyzing deforestation at different spatial scales Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005363 Metatranscriptome Analysis megahit v. 0.2.0 No Yes nusslein@microbio.umass.edu Nusslein, Klaus, Klaus Nusslein No Environmental Terrestrial Tropical forest Soil Unclassified Tropical rainforest soil -10.0 -62.0 1818250197 6122031 7269 1410 38806 4297 SRX2568046 Unrestricted 0.0 Metatranscriptome 3300052323 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_2A1_100118_1910 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052323 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@dbi.udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 43867203 109317 307 174 755 712 Unrestricted 234.84 Metatranscriptome 3300042025 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Metatranscriptome of estuary water microbial communities from Narragansett Bay, Rhode Island, USA - E3_negO2B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042025 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.9078 -71.5683 458342566 866197 517 191 930 1110 SRX14875663 Unrestricted 19.87 Metatranscriptome 3300008904 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of annulated tree boas from Steinhart Aquarium in San Francisco, USA - CAS02_Liver University of California, San Francisco 3300008904 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Biliary tract Digestive system Liver Liver 3923036 11601 0 0 0 0 SRX170616 0.0 Metatranscriptome 3300060245 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 6R_CD_T1_R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300060245 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 29986357 73658 212 176 678 1152 Unrestricted 134.26 Metatranscriptome 3300018968 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_068 - TARA_N000000713 (ERX1782205-ERR1712096) Canada's Michael Smith Genome Sciences Centre 3300018968 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -31.0198 4.6685 542147907 1138387 87 73 398 1036 0.0 Metatranscriptome 3300052692 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of lake water microbial communities from Sandhills, Nebraska, United States - NSL_Border_2018 (Metagenome Metatranscriptome) (Annotation) DOE Joint Genome Institute (JGI) 3300052692 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.79185 -102.53404 175384941 392110 5 0 89 1 Unrestricted 309.96 Metatranscriptome 3300007730 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDPlume_2015_RNA CLC_assembly Marine Biological Laboratory 3300007730 Metatranscriptome Analysis CLC genomics workbench, v. 7.0 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Hydrothermal plume 45.9372 -130.082 9055717 15917 1227 217 2141 470 0.0 Metatranscriptome 3300023675 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLI5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023675 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 49.0448 13.618 11834181 23839 41 152 1230 1204 SRX4455165 Unrestricted 46.28 Metatranscriptome 3300017300 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Girton, Cambridgeshire in DY-V medium with yeast, 18 C, 0 psu salinity and 471 ?mol photons light - Spumella elongata CCAP 955/1 (MMETSP1098) National Center for Genome Resources 3300017300 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 52.2333 0.08333 35742599 52766 12 11 22 7 0.0 Metatranscriptome 3300038325 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_N3_C1_D3_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038325 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 96367118 209448 381 908 5533 2241 SRX9391069 Unrestricted 151.49 Metatranscriptome 3300023282 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from Aparatermes sp. nest - French Guiana - 29-3 mRNA University of Luxembourg 3300023282 Metatranscriptome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut -53.22805556 -53.047407 131208938 462142 0 2 10 17 0.0 Metatranscriptome 3300024342 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 RNA GHGhigh gp2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024342 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -40.3794 175.6106 1113846325 2190769 31 76 1114 563 SRX4497781, SRX7509817 Unrestricted 0.0 Metatranscriptome 3300023557 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023557 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 49.0448 13.618 28179540 42216 18 32 421 290 SRX4454813 Unrestricted 25.46 Metatranscriptome 3300018606 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_149 - TARA_N000002509 (ERX1782176-ERR1711960) Canada's Michael Smith Genome Sciences Centre 3300018606 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine 34.0771 -49.8233 49053256 137665 12 4 24 23 0.0 Metatranscriptome 3300046556 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - P2-R2-B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046556 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.357 19.047 90111570 213227 90 215 397 814 Unrestricted 16.62 Metatranscriptome 3300030992 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Litter N3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030992 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ake.olson@slu.se; fmartin1954@me.com Ake Olson; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 520646529 1413894 1312 293 3023 921 SRX3345292 Unrestricted 0.0 Metatranscriptome 3300048684 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Metatranscriptome of soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR16 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048684 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.3476 -119.2808 108453443 191036 33 5 107 36 Unrestricted 42.61 Metatranscriptome 3300016727 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011510BT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016727 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 220777280 484943 264 549 6309 9365 SRX3780748 Unrestricted 0.0 Metatranscriptome 3300016919 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Great Salt Lake in f/2 medium with seawater, 29 C, 35 psu salinity and 209 ?mol photons light - Chaetoceros sp. GSL56 (MMETSP0200_2) National Center for Genome Resources 3300016919 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 40.95118 -112.08824 25096967 21273 5 2 8 5 0.0 Metatranscriptome 3300021346 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.374 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021346 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.286 -124.052 333600173 847439 218 1466 2484 4905 SRX4016229 Unrestricted 0.0 Metatranscriptome 3300017141 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Sargasso Sea in f/2 medium with seawater and 400nM iron, 25 C, 35 psu salinity and 147 ?mol photons light - Thalassiosira oceanica CCMP 1005 (MMETSP0970) National Center for Genome Resources 3300017141 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 33.1833 -65.25 30935444 33743 2 3 1 6 0.0 Metatranscriptome 3300019236 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA - AD_STIC10_MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019236 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 41.84 -87.68 207912309 415212 63 173 7791 1383 SRX3903245 Unrestricted 0.0 Metatranscriptome 3300010976 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 corn stover (Eukaryote Community Metatranscriptome) (version 4) (version 3) DOE Joint Genome Institute (JGI) 3300010976 Metatranscriptome Analysis rnaSPAdes v. 0.1.1 No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 40.102108 -88.227299 535295320 947199 75 354 252 641 SRX5780594 Unrestricted 0.0 Metatranscriptome 3300008863 *Microbiome Permanent Draft Microbial communities from harbor seals stranded along the coast of California, USA Microbial communities from harbor seals stranded along the coast of California, USA - com4 Oregon State University 3300008863 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Brain Nervous system Unclassified Harbor seal brain 37.8592 -122.4853 330423812 614804 0 3 49 11 ERX1190724 0.0 Metatranscriptome 3300037544 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Metatranscriptome of lab enriched marine microbial communities from Marineland, Florida, USA - SWP_R2_TP1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037544 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6475 -82.3464 34908364 68310 62 21 168 139 SRX9144792 Unrestricted 89.4 Metatranscriptome 3300024561 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_UVDOM_RepA_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024561 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 241104469 503827 142 270 1398 2647 SRX4547779 Unrestricted 19.76 Metatranscriptome 3300046242 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_2_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046242 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 69738226 107846 8 54 203 341 Restricted 297.6 Metatranscriptome 3300007338 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S5 c16 DCM_B metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007338 Metatranscriptome Analysis megahit v. 0.2.0 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 163017186 431433 5214 2939 13147 9456 SRX3196602 Unrestricted 0.0 Metatranscriptome 3300036663 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - WOF_Exp1_90M_TF_031418 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036663 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 256911017 531432 400 46 981 512 SRX8842014 Unrestricted 47.31 Metatranscriptome 3300030823 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T27 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030823 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 22503399 43797 86 42 170 277 SRX5794602 Unrestricted 22.96 Metatranscriptome 3300011057 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 25 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011057 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 48106716 117739 134 327 9443 2060 Unrestricted 0.0 Metatranscriptome 3300035579 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - 16L (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035579 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4327 16.6819 54560599 107287 302 501 3409 1561 SRX8209347 Unrestricted 47.25 Metatranscriptome 3300038157 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_N3_C1_D3_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038157 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 15127140 25914 334 872 5049 2290 SRX9390223 Unrestricted 77.92 Metatranscriptome 3300032576 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-2 corn stover (Eukaryote Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032576 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 40.102108 -88.227299 90691327 143660 5 54 21 91 SRX5780730 Unrestricted 0.0 Metatranscriptome 3300019180 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLA2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019180 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified Plant litter 49.044 13.617 15461202 33109 21 259 280 1505 SRX3937015 Unrestricted 0.0 Metatranscriptome 3300008397 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34713 J. Craig Venter Institute (JCVI) 3300008397 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 16485 18 0 0 0 0 0.0 Metatranscriptome 3300032754 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Plim5_28May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032754 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 1019246840 1669609 16 7 41 149 SRX5801942 Unrestricted 0.0 Metatranscriptome 3300004536 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 70_HOW9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004536 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 32240090 74802 247 962 734 2158 SRX2780163 Unrestricted 0.0 Metatranscriptome 3300021899 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S27 C1 B23 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021899 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 59.500026 -18.069873 103525032 206093 112 88 287 308 SRX5204622 Unrestricted 0.0 Metatranscriptome 3300048745 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - CP-10B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048745 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.0477 106011455 259365 35 46 222 158 Unrestricted 20.86 Metatranscriptome 3300019012 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_081 - TARA_N000001426 (ERX1809764-ERR1740129) Canada's Michael Smith Genome Sciences Centre 3300019012 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -44.5582 -52.2718 708128929 1426784 38 55 54 418 0.0 Metatranscriptome 3300022652 *Microbiome Permanent Draft Anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States Metatranscriptome of anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States - LAC_MetaT_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022652 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes alvarez@ce.berkeley.edu Lisa Alvarez-Cohen No Engineered Bioreactor Unclassified Anaerobic Unclassified anaerobic bioreactor biomass 37.8719 -122.2585 115528742 371780 8 14 1529 131 SRX4391791 Unrestricted 0.0 Metatranscriptome 3300004331 *Microbiome Permanent Draft Metatranscriptomics studies in sediment microbial communities from the mangroves in Sao Paulo, Brazil Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC2C 3300004331 Metatranscriptome Analysis IDBA released by JGI data releasing policy No Yes luc.g.cabral@gmail.com Luc?lia Cabral, Lucelia Cabral No Environmental Aquatic Intertidal zone Marine Mangrove sediment Mangrove sediment -23.8553 -46.1394 28768163 84647 1471 656 5550 1834 0.0 Metatranscriptome 3300031041 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031041 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 59.9979 10.7895 28223715 61748 151 204 591 1153 SRX5351410 Unrestricted 0.0 Metatranscriptome 3300049163 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_B_7_drought (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049163 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 10521892 25034 46 50 179 241 Unrestricted 405.79 Metatranscriptome 3300005631 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling - Hofmockel_1000000-3 ISU MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005631 Metatranscriptome Analysis megahit v. 0.2.0 No Yes khof@iastate.edu, kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Agricultural land Soil Unclassified Enriched soil aggregate 42.0266187 -93.6486594 33404116 79291 238 50 1499 134 SRX3195283 Unrestricted 0.0 Metatranscriptome 3300018708 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_072 - TARA_N000000843 (ERX1782185-ERR1711899) Canada's Michael Smith Genome Sciences Centre 3300018708 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.7726 -17.915 152099788 293392 10 14 58 338 0.0 Metatranscriptome 3300023563 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023563 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 49.0427 13.6161 28551954 48557 22 28 407 270 SRX4455002 Unrestricted 20.87 Metatranscriptome 3300018633 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS857_ls5 J. Craig Venter Institute (JCVI) 3300018633 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 55150351 172839 81 30 153 230 0.0 Metatranscriptome 3300008764 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_2065 Massachusetts Institute of Technology 3300008764 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 8852690 29695 23 11 474 988 0.0 Metatranscriptome 3300008931 *Microbiome Permanent Draft Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica - 1C J. Craig Venter Institute (JCVI) 3300008931 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ice edge, McMurdo Sound, Antarctica -77.36 164.28 167408292 459697 28 9 95 90 0.0 Metatranscriptome 3300046549 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_1_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046549 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 55417918 84500 1 0 17 0 Restricted 177.79 Metatranscriptome 3300010307 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_0.1_0.8_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010307 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 39.2454 -76.028 76672414 170868 296 577 11106 6493 SRX2526715 Unrestricted 0.0 Metatranscriptome 3300011089 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011089 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 174232616 374977 232 679 18145 2671 Unrestricted 0.0 Metatranscriptome 3300050678 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae culture inoculated with mixed bacterial community from LLNL, Livermore, California, USA - f1_d2_A_S01 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050678 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 26952080 35839 1 1 3 2 Restricted 145.76 Metatranscriptome 3300059607 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 163R_SW_T3_R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059607 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 160743834 401747 204 198 1113 1278 Unrestricted 54.33 Metatranscriptome 3300030724 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB4_949_20m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030724 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 75.0007 -150.0027 102596636 193577 121 26 165 623 SRX5651479 Unrestricted 17.2 Metatranscriptome 3300046184 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_6_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046184 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 57719087 99902 1 0 18 3 Restricted 91.05 Metatranscriptome 3300021927 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-122M (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021927 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 150813228 268125 40 62 58 156 SRX5295436 Unrestricted 0.0 Metatranscriptome 3300026401 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0911-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026401 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 85792341 150549 23 104 38 48 SRX4796175 Unrestricted 67.25 Metatranscriptome 3300026399 *Microbiome Permanent Draft Enriched cultures of PCE-dechlorinating microbial communities from Ithaca, New York, USA Metatranscriptome of enriched culture of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.S4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026399 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes rer26@cornell.edu Ruth Richardson No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified defined medium 42.4447 -76.485 77217205 117519 16 3 190 14 SRX4393192 Unrestricted 127.92 Metatranscriptome 3300004503 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 79 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004503 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 47173241 146708 20459 1502 48016 3498 Unrestricted 0.0 Metatranscriptome 3300031425 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T14 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031425 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 25155116 47469 87 78 104 387 SRX5352038 Unrestricted 45.31 Metatranscriptome 3300049544 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_B_4_drought (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049544 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 27329116 67158 66 51 230 293 Unrestricted 344.65 Metatranscriptome 3300046266 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_4_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046266 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 48125955 84613 2 0 19 1 Restricted 200.02 Metatranscriptome 3300043279 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - FS5.Sep17.R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043279 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.5326 -110.7972 8-9 53679160 112242 35 0 449 0 SRX10105702 Unrestricted 31.65 Metatranscriptome 3300038163 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_OW2_C1_D3_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038163 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 20632914 38465 376 183 4291 532 SRX9390226 Unrestricted 226.04 Metatranscriptome 3300032120 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA5 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300032120 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 49.0448 13.618 37846216 87664 206 111 2292 830 SRX5243654, SRX4455325 Unrestricted 0.0 Metatranscriptome 3300011063 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 15 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011063 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 62143072 148696 105 226 6713 1381 Unrestricted 0.0 Metatranscriptome 3300036657 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp02_R33 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036657 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 261734185 548206 858 101 1623 1850 SRX8835594 Unrestricted 18.61 Metatranscriptome 3300041998 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Metatranscriptome of feshwater microbial communities from Washington, USA - columbiariver2_2019_sw_WHONDRS-S19S_0076 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300041998 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 46.6793 -119.4626 146179480 323949 534 562 1880 2671 SRX14870320 Unrestricted 42.69 Metatranscriptome 3300021359 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 12015 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021359 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.7468 -122.0193 616997479 1393333 559 218 23674 7365 SRX4010493 Unrestricted 0.0 Metatranscriptome 3300017606 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in ASW medium, resuspended in ASW w/o silicate, 20 C, 29 psu salinity and 692 ?mol photons light - Chaetoceros curvisetus (MMETSP0717) (SRX549070-SRR1294456) National Center for Genome Resources 3300017606 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 32.9 -117.255 7876900 14235 5 1 4 1 0.0 Metatranscriptome 3300018615 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_082 - TARA_N000001398 (ERX1782230-ERR1712123) Canada's Michael Smith Genome Sciences Centre 3300018615 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -47.1899 -58.2724 99846176 170259 10 2 22 68 0.0 Metatranscriptome 3300003306 *Microbiome Permanent Draft Biogas fermentation microbial communities from biogas plants in Germany Biogas fermentation microbial communities from Germany - Plant 1 RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003306 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes asczyrba@techfak.uni-bielefeld.de Alexander Sczyrba No Engineered Bioreactor Digestate Anaerobic Unclassified Biogas fermentantion 52.0385 8.4956 90614989 185519 7 8 457 22 SRX2505783 Unrestricted 0.0 Metatranscriptome 3300042148 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Metatranscriptome of seawater microbial communities from Western North Atlantic Ocean - Oce5_SurfR (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042148 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Unclassified Marine Unclassified seawater 35.0018 -73.5968 105087022 249435 919 62 1751 866 Unrestricted 36.1 Metatranscriptome 3300008857 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_4079 Massachusetts Institute of Technology 3300008857 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 2320595 7650 12 3 251 498 0.0 Metatranscriptome 3300019203 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNTR2_MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019203 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 34.65 135.05 141967403 290315 48 58 10296 563 SRX4809149 Unrestricted 0.0 Metatranscriptome 3300013041 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013041 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil corn rhizosphere 42.3948 -85.3738 3740944 8885 30 165 4149 1341 SRX4062849, SRX4062848 Unrestricted 0.0 Metatranscriptome 3300010870 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 3A (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010870 Metatranscriptome Analysis MEGAHIT v. 1.0.4b No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 497122445 1206294 5233 663 14302 1643 SRX2752796 Unrestricted 0.0 Metatranscriptome 3300029670 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Phe2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029670 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 59460968 110397 4 9 180 48 SRX5356193 Unrestricted 87.83 Metatranscriptome 3300018566 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_109 - TARA_N000001742 (ERX1789486-ERR1719286) Canada's Michael Smith Genome Sciences Centre 3300018566 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 2.0574 -84.5546 19212816 56988 0 2 0 13 0.0 Metatranscriptome 3300046637 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - G1-R3-A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046637 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.048 68932361 149110 82 58 231 222 Unrestricted 29.58 Metatranscriptome 3300030652 *Microbiome Permanent Draft Metatranscriptome of decayed wood fungal communities from Pinus contorta in National Forests from Montana, United States Metatranscriptome of decayed wood fungal communities from Pinus contorta in Bitterroot National Forest, Montana, United States - GP1-2E (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030652 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes dcullen@wisc.edu Daniel Cullen No Host-associated Plants Stem Phyllosphere Wood decay decayed wood 45.7544 -113.9092 74952624 143171 7 2 10 14 SRX5250604 Unrestricted 0.0 Metatranscriptome 3300008294 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - PM91.FECAL.14dpc CCME-COLORADO 3300008294 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 6754928 24506 31 0 575 10 ERX286241 0.0 Metatranscriptome 3300010913 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS917_55_13C_TP1_INC4_9 Marine Biological Laboratory 3300010913 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 2095668 4216 557 15 1189 22 0.0 Metatranscriptome 3300003560 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from the University of North Carolina, USA - metaT NBMF1_13_lowP_nobac_d2 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003560 Metatranscriptome Analysis rnnotator v. 3.3.1 Reverted to private per Tijana Glavina del Rio (Oct 2014) No Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9082 -79.0499 53364492 75648 1 1 0 0 SRX2556782, SRX2556781 Unrestricted 0.0 Metatranscriptome 3300006385 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S5 Surf_B metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006385 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@mail.ubc.ca, shallam@interchange.ubc.ca Steven J Hallam, Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 157366985 480136 3763 3056 9072 12993 SRX3196554 Unrestricted 0.0 Metatranscriptome 3300009310 *Microbiome Permanent Draft Eukaryotic communities of water from Amazon river, Brazil and North Atlantic ocean Eukaryotic communities of water from the North Atlantic ocean - ACM9 University of Georgia 3300009310 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 6874772 21653 0 0 2 0 0.0 Metatranscriptome 3300022724 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022724 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 610305970 1424658 144 441 4227 3107 SRX4406536 Unrestricted 0.0 Metatranscriptome 3300052449 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 116-S78Day7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052449 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 102072828 198062 36 1 102 19 Unrestricted 94.93 Metatranscriptome 3300012783 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES002 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012783 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 33791420 72224 224 92 5002 1701 SRX3379879 Unrestricted 0.0 Metatranscriptome 3300017256 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no Na2SiO3, 25 C, 34 psu salinity and 324 ?mol photons light - Symbiodinium sp. CCMP 2430 (MMETSP1115) National Center for Genome Resources 3300017256 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -23.5 152.0 52918223 66955 10 1 22 1 0.0 Metatranscriptome 3300030669 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 30_T1F_3236KB8 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030669 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 79735079 106262 0 5 26 272 SRX4646417 Unrestricted 0.0 Metatranscriptome 3300009951 *Microbiome Permanent Draft Metatransciptomics of Namibian Thiomargarita spp. and epibionts in response to nutrient stimuli Thiomargarita spp. colony and attached microbial community from Benguela Upwelling Sediments, Namibia, Africa - JVB2 University of Minnesota - Twin Cities 3300009951 Metatranscriptome Analysis IDBA 0.20 released per JGI data release policy Yes Yes beflood@umn.edu Beverly Flood No Environmental Aquatic Unclassified Sediment Unclassified marine sediment -23.0 14.37 445548 1437 4 12 72 47 0.0 Metatranscriptome 3300017361 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Gulf of Mexico in L1 medium, 22 C, 32 psu salinity and 312 ?mol photons light - Scrippsiella trochoidea CCMP 3099 (MMETSP0272) National Center for Genome Resources 3300017361 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 27.3122 -82.601 97269770 130881 8 2 12 1 0.0 Metatranscriptome 3300033619 *Microbiome Permanent Draft Characterization of microbial community from North Pond CORK fluids Aquifer fluid microbial communities from North Pond CORKs, Mid-Atlantic Ridge, Atlantic Ocean - Hole 1383C Shallow RNA SIP 13C Marine Biological Laboratory 3300033619 Metatranscriptome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Aquatic Oceanic Marine Oceanic crust Aquifer fluid 22.8 -46.05 8236946 12212 826 7 1160 19 0.0 Metatranscriptome 3300047416 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 819570fa-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047416 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 126390637 319940 337 245 1501 1438 Unrestricted 67.82 Metatranscriptome 3300017542 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Great South Bay, New York in HESNW medium w/o silica, 18 C, 30 psu salinity and 514 ?mol photons light - Akashiwo sanguinea CCCM 885 (MMETSP0223_2) (SRX549077-SRR1294463) National Center for Genome Resources 3300017542 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 40.6666 -73.25 59682 208 0 0 0 0 0.0 Metatranscriptome 3300030683 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Anb10 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030683 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 300685359 638918 125 144 414 409 SRX5245087 Unrestricted 0.0 Metatranscriptome 3300021284 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States - R878 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021284 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 46.217 -123.781 40256096 89037 292 581 2012 6927 SRX4015214 Unrestricted 0.0 Metatranscriptome 3300006732 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S2 250_B metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006732 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 216395083 669148 1693 1785 4857 5028 SRX3196593 Unrestricted 0.0 Metatranscriptome 3300019275 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019275 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 4.2396 -73.2024 425238008 1012731 890 115 74575 932 SRX3936998 Unrestricted 0.0 Metatranscriptome 3300012769 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Montjoie, Canada - M_140205_X_mt (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012769 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.4091 -72.0994 153555659 330578 337 146 3327 11252 SRX3015189 Unrestricted 0.0 Metatranscriptome 3300002680 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF132 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002680 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 13827099 41933 53 384 827 1912 SRX2014424 Unrestricted 0.0 Metatranscriptome 3300009718 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from Louisiana Shelf, Gulf of Mexico - GoM_2015_C6C_248_2m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009718 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 28.8679 -90.4764 4140513 8247 66 41 982 754 Unrestricted 0.0 Metatranscriptome 3300004575 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 51_LOW8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004575 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 27990794 68744 121 16 506 36 SRX2780066 Unrestricted 0.0 Metatranscriptome 3300038281 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_OW2_C1_D3_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038281 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 51550347 110036 245 235 2711 577 SRX9390606 Unrestricted 263.75 Metatranscriptome 3300033527 *Microbiome Permanent Draft Rhizosphere microbial communities from salt marsh grasses in Alabama, United States Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300033527 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes omason@fsu.edu Olivia Mason No Host-associated Plants Rhizosphere Roots Unclassified rhizosphere 30.2619 -88.2383 194824088 411657 592 2480 7208 9434 SRX7525040 Unrestricted 28.64 Metatranscriptome 3300009750 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from Louisiana Shelf, Gulf of Mexico - GoM_2015_C6C_206_18m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009750 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 28.8679 -90.4764 78604195 159771 188 327 3173 5133 Unrestricted 0.0 Metatranscriptome 3300046424 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_8_Fire (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046424 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1925 -81.3585 39847419 90614 26 82 538 384 Unrestricted 45.07 Metatranscriptome 3300012752 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES162 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012752 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 91284840 194048 169 290 2101 4714 SRX3527336 Unrestricted 0.0 Metatranscriptome 3300036503 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Omics17_030918 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036503 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 205667375 445126 809 102 1649 1746 SRX8834689 Unrestricted 23.8 Metatranscriptome 3300010139 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_8_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010139 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 104561872 247615 138 790 7414 6256 Unrestricted 0.0 Metatranscriptome 3300006388 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Gel_01_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006388 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 206907226 528867 385 343 1270 718 SRX2752003 Unrestricted 0.0 Metatranscriptome 3300016683 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES128 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016683 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.099 -89.405 46624871 94433 83 85 1119 2230 SRX3780039 Unrestricted 0.0 Metatranscriptome 3300032432 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day12_8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032432 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 24996880 41575 7 0 30 0 SRX6858018 Unrestricted 253.48 Metatranscriptome 3300046251 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_2_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046251 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 70836600 109311 4 39 147 195 Restricted 263.8 Metatranscriptome 3300017152 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in filtered seawater, at 15 C, 29.4 psu salinity and 499 ?mol photons light - Oxyrrhis marina (MMETSP0471) National Center for Genome Resources 3300017152 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 35637970 47441 95 12 205 19 0.0 Metatranscriptome 3300012399 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012399 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 187180216 452906 68 499 8026 4773 Unrestricted 0.0 Metatranscriptome 3300018773 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_124 - TARA_N000002037 (ERX1789391-ERR1719301) Canada's Michael Smith Genome Sciences Centre 3300018773 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -9.1504 -140.5216 162688619 402186 3 4 13 58 0.0 Metatranscriptome 3300004472 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 71 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004472 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 147215527 425359 10643 3345 36951 7322 Unrestricted 0.0 Metatranscriptome 3300009355 *Microbiome Permanent Draft Microbial communities of thrombolites from Highborne Cay, Bahamas Microbial communities of thrombolites from Highborne Cay, Bahamas - Zone3_total_RNA University of Florida 3300009355 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Saline Non-marine Saline and Alkaline Microbial mats Microbial mats 24.72 -76.82 52622272 175302 765 307 28833 4689 SRX707230 0.0 Metatranscriptome 3300021259 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_2_08_16RNAfungal (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021259 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 5544764 12034 1327 395 3741 1182 SRX3903136 Unrestricted 0.0 Metatranscriptome 3300035407 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R1105U20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035407 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0387 28519774 54975 245 409 5330 1156 SRX8236828 Unrestricted 47.48 Metatranscriptome 3300024549 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepC_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024549 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 216802296 434516 69 201 572 1415 SRX4547618 Unrestricted 20.55 Metatranscriptome 3300031188 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_L6_16mM_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031188 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 9959419 17015 3 0 3 8 SRX5783591 Unrestricted 33.86 Metatranscriptome 3300028750 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Cys2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028750 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 35659319 69002 10 13 377 56 SRX5356122 Unrestricted 85.03 Metatranscriptome 3300050364 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T1_2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050364 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 192686558 323046 14 14 67 72 Unrestricted 84.84 Metatranscriptome 3300009608 *Microbiome Permanent Draft Marine eukaryotic communities from various locations to study complex ecological interactions Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_2Apr14_M1_3um Metatranscriptome (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009608 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes azworden@mbari.org; twoyke@lbl.gov Alexandra Worden; Tanja Woyke No Environmental Aquatic Oceanic Marine Unclassified Marine 36.7507 -122.0138 767809288 1413710 272 38 1323 291 SRX7203894 Unrestricted 0.0 Metatranscriptome 3300017169 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Terra Nova Bay in natural sea water, 4 C, 35 psu salinity and 262 ?mol photons light - Euplotes focardii TN1 (MMETSP0205) National Center for Genome Resources 3300017169 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 18905355 34710 25 28 46 34 0.0 Metatranscriptome 3300009733 *Microbiome Permanent Draft Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling - T3-HHNH4 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009733 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes milachis@u.washington.edu Ludmila Chistoserdova No Engineered Modeled Plant nodule Simulated communities (microbial mixture) Unclassified Methane-oxidizing 47.6193 -122.2449 49479128 114522 0 0 577 2 SRX2525434 Unrestricted 0.0 Metatranscriptome 3300017183 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in L1 medium with seawater, 2 C, 33 psu salinity and 553 ?mol photons light - Mantoniella sp. CCMP1436 (MMETSP1468) National Center for Genome Resources 3300017183 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -78.8333 163.0 25479904 34881 2 4 1 1 0.0 Metatranscriptome 3300002344 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI - N_134min_Aerobic (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002344 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes tmcmahon@cae.wisc.edu, tmcmahon@engr.wisc.edu; tmcmahon@cae.wisc.edu Sludge Phage users, Katherine McMahon; Trina McMahon Yes 20148930, 26555245 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.078418 -89.386482 209833646 367402 7 64 32 187 SRX2554580 Unrestricted 0.0 Metatranscriptome 3300008907 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of annulated tree boas from Steinhart Aquarium in San Francisco, USA - CAS05_Liver University of California, San Francisco 3300008907 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Biliary tract Digestive system Liver Liver 4181605 12637 0 0 1 0 SRX170620 0.0 Metatranscriptome 3300004578 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 44_HOW7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004578 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 32382089 76055 265 659 790 1630 SRX2780054 Unrestricted 0.0 Metatranscriptome 3300008670 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-56 University of Hawaii 3300008670 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 1581762 3111 4 2 166 31 0.0 Metatranscriptome 3300059631 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 168R_SD_T3_R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059631 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 109776129 274410 285 255 1231 1437 Unrestricted 83.19 Metatranscriptome 3300051592 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 24_100_8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051592 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 153578695 402956 217 262 1518 1490 Unrestricted 61.17 Metatranscriptome 3300012401 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012401 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 187008005 453642 63 500 8120 4653 Unrestricted 0.0 Metatranscriptome 3300026437 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 34R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026437 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 165434205 281093 60 10 105 204 SRX4783603 Unrestricted 33.98 Metatranscriptome 3300034672 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034672 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 277611432 651069 340 1153 4708 5052 SRX7520339, SRX9093901 Unrestricted 0.0 Metatranscriptome 3300019278 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019278 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 4.2396 -73.2024 390827276 939103 769 468 72346 3209 SRX3939608 Unrestricted 0.0 Metatranscriptome 3300037639 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_M1_C2_D4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037639 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 63717500 119422 329 1898 2918 5017 SRX9383791 Unrestricted 197.5 Metatranscriptome 3300018811 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_036 - TARA_N000000319 (ERX1782290-ERR1712064) Canada's Michael Smith Genome Sciences Centre 3300018811 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 20.8222 63.5133 181413155 429180 24 20 154 322 0.0 Metatranscriptome 3300049470 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_24 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300049470 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 261934198 591898 245 71 693 280 Unrestricted 23.07 Metatranscriptome 3300017021 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in modified f/2 medium with seawater, 3 C, 33.6 psu salinity and 384 ?mol photons light - Thalassiothrix antarctica L6-D1 (MMETSP0154) National Center for Genome Resources 3300017021 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -51.83333 -28.66667 30319401 36551 2 1 3 1 0.0 Metatranscriptome 3300052400 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 0_50_13 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052400 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 52172601 125523 484 420 2497 2554 Unrestricted 74.5 Metatranscriptome 3300049154 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_22 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300049154 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 204782515 450313 282 78 816 351 Unrestricted 16.85 Metatranscriptome 3300004139 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004139 Metatranscriptome Analysis megahit v. 0.2.0 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.531427 -72.189946 428185153 1273896 503 147 1810 847 SRX2014016 Unrestricted 0.0 Metatranscriptome 3300028255 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepB_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028255 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 90086963 194261 76 70 331 540 SRX5245483 Unrestricted 25.29 Metatranscriptome 3300023554 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 71R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023554 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 6975991 15859 11 15 280 250 SRX4475695 Unrestricted 64.32 Metatranscriptome 3300008753 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - E15.FECAL.14dpc CCME-COLORADO 3300008753 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 11253354 41962 84 0 1228 13 0.0 Metatranscriptome 3300011323 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1300 MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011323 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 134757517 272344 77 53 14262 514 SRX5628638 Unrestricted 0.0 Metatranscriptome 3300027086 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0493-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300027086 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 189864525 329107 5 4 41 39 SRX5256580 Unrestricted 94.58 Metatranscriptome 3300036472 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen9, Rep 1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036472 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 92723447 128782 6 0 183 0 SRX8382510 Unrestricted 55.44 Metatranscriptome 3300018705 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_093 - TARA_N000001290 (ERX1789614-ERR1719477) Canada's Michael Smith Genome Sciences Centre 3300018705 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -34.0614 -73.1066 115438685 215047 1 5 3 38 0.0 Metatranscriptome 3300037720 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of photosynthetic mat microbial communities from Mushroom Spring, YNP, Wyoming, United States - 20090730 0840 sample R10cd (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037720 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 91009622 218550 0 0 72 0 SRX9378958 Unrestricted 135.84 Metatranscriptome 3300032975 *Microbiome Permanent Draft Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - s75 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032975 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes colin.averill@usys.ethz.ch Colin Averill No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 36.0 -78.0 50958151 109693 1 48 35 168 SRX5786929 Unrestricted 84.85 Metatranscriptome 3300018896 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_084 - TARA_N000001362 (ERX1789685-ERR1719483) Canada's Michael Smith Genome Sciences Centre 3300018896 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -60.2584 -60.6226 383265519 619415 2 4 6 84 0.0 Metatranscriptome 3300019099 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_064 - TARA_N000000927 (ERX1782419-ERR1712084) Canada's Michael Smith Genome Sciences Centre 3300019099 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -29.4991 37.9938 75751899 207508 114 38 522 587 0.0 Metatranscriptome 3300031522 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean - PS103-3.R2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031522 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified marine -51.9926 2.0992 1847287334 3397414 16 3 30 186 SRX5356507 Unrestricted 15.26 Metatranscriptome 3300055310 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP8.2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055310 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 293131312 578097 4 13 68 72 Unrestricted 45.61 Metatranscriptome 3300000833 *Microbiome Permanent Draft Soil microbial communities from four geographically distinct crusts in the Colorado Plateau and Sonoran desert Soil microbial communities from Moab, Utah, sample - Soil Crust Prior wet up (biological replicate C) 0C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300000833 Metatranscriptome Analysis No Yes elbrodie@lbl.gov, ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Desert Soil Unclassified Soil 38.714694 -109.692944 359274629 1321048 163 467 861 1499 SRX3311663 Unrestricted 0.0 Metatranscriptome 3300041440 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass leaf microbial community from Lincoln, Canterbury, New Zealand - RGL18_9 MetaT AgResearch, New Zealand, Mosgeil 3300041440 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 7014719 12805 121 156 348 379 0.0 Metatranscriptome 3300041995 *Microbiome Permanent Draft Biological soil crust microbial communities from Mojave Desert, California, United States Metatranscriptome of biological soil crust microbial communities from Mojave Desert, CA, USA - LAC_S1_50hours_MT_FICUS_504271 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300041995 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes erik@olemiss.edu Erik Hom No Environmental Terrestrial Soil crust Soil Biological biological soil crusts 34.1736 -115.3888 61799139 128643 319 204 2579 836 SRX14827170 Unrestricted 74.22 Metatranscriptome 3300046159 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-197 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046159 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4199 -64.1151 86905218 207648 318 23 556 247 Unrestricted 30.13 Metatranscriptome 3300046601 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-62 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046601 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.423 -64.1209 134772233 329120 892 33 1449 503 Unrestricted 17.85 Metatranscriptome 3300008782 *Microbiome Permanent Draft Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico - 125m_>1.6micron Georgia Institute of Technology 3300008782 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hypoxic zone Marine Unclassified Ocean water 18.9 -104.5 2324584 4740 22 36 778 493 SRX895494 0.0 Metatranscriptome 3300018618 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_041 - TARA_N000000071 (ERX1782354-ERR1712005) Canada's Michael Smith Genome Sciences Centre 3300018618 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 14.6059 69.9776 61377167 176030 50 28 237 485 0.0 Metatranscriptome 3300008313 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.14.3OB.15dpc CCME-COLORADO 3300008313 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 3599299 14951 21 10 297 25 0.0 Metatranscriptome 3300032757 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_07AUG2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032757 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.372 145634300 255856 144 129 261 705 SRX7519904 Unrestricted 39.99 Metatranscriptome 3300018650 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_138 - TARA_N000002997 (ERX1782119-ERR1712169) Canada's Michael Smith Genome Sciences Centre 3300018650 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine 6.3559 -103.0598 109857426 215753 63 36 163 274 0.0 Metatranscriptome 3300045466 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P26SSC2_190918_c (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300045466 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 25401478 64133 43 255 873 1126 SRX20650859 Unrestricted 270.14 Metatranscriptome 3300018551 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS680_0p8 J. Craig Venter Institute (JCVI) 3300018551 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 56.1664 16.378218 6772759 22424 43 31 695 777 0.0 Metatranscriptome 3300047340 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_3_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047340 Metatranscriptome Analysis megahit v. 2021-08-26 13:25:01 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated, Environmental Arthropoda, Terrestrial Insects nest Ant dump, Nest Nest dump ant dump 43.0765 -89.412 138923759 189643 5 0 28 1 Restricted 167.32 Metatranscriptome 3300008394 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34708 J. Craig Venter Institute (JCVI) 3300008394 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 7814 28 0 0 0 0 0.0 Metatranscriptome 3300038154 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_N3_C1_D1_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038154 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 20881492 35571 351 899 4455 2414 SRX9390234 Unrestricted 103.96 Metatranscriptome 3300011054 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 1 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011054 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 43869974 107905 145 294 12511 2222 Unrestricted 0.0 Metatranscriptome 3300017356 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine algae-associated eukaryotic communities from Gulf of Mexico in L1 medium with seawater, 25 C, 35 psu salinity and 739 ?mol photons light - Karenia brevis Wilson (MMETSP0648_2) National Center for Genome Resources 3300017356 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Algae Unclassified Unclassified Unclassified marine algae-associated 88827728 130197 4 5 9 5 0.0 Metatranscriptome 3300021151 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_06_16RNAfungal (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021151 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 245030611 549344 1301 614 31524 5165 SRX4063409 Unrestricted 0.0 Metatranscriptome 3300006285 *Microbiome Permanent Draft Prairie soil microbial communities from Kansas, USA, after rainfall Prairie soil microbial communities from Kansas, USA, after rainfall - K11 Oregon State University 3300006285 Metatranscriptome Analysis VELVET 1.2.10, combine 23, 27, 31 released per JGI data release policy No Yes lzeglin@ksu.edu Lydia Zeglin No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.1038 -96.6133 11568611 67409 20 4 50 8 0.0 Metatranscriptome 3300009210 *Microbiome Permanent Draft Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample 2-1 University of Duisburg-Essen 3300009210 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Pond Freshwater Unclassified Eutrophic pond 51.46 7.0 162855138 544335 40 65 977 467 SRX505242 0.0 Metatranscriptome 3300046162 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046162 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4161 -64.8992 76083493 173687 789 56 1267 827 Unrestricted 21.37 Metatranscriptome 3300031428 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031428 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 56312322 102520 65 31 95 217 SRX5352063 Unrestricted 19.71 Metatranscriptome 3300037547 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Metatranscriptome of lab enriched marine microbial communities from Marineland, Florida, USA - SWA_R3_TP1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037547 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6475 -82.3464 161004420 322221 250 101 452 444 SRX9145868 Unrestricted 46.38 Metatranscriptome 3300036578 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Omics18_030918 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036578 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 226807760 492234 741 47 1366 1176 SRX8834688 Unrestricted 22.13 Metatranscriptome 3300017261 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from English Channel in enriched f/2 medium with filtered seawater, 15 C, 35 psu salinity and 328 ?mol photons light - Coccolithus braarudii PLY182g (MMETSP0164_2) National Center for Genome Resources 3300017261 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 50.033 4.366 28146103 44105 7 16 18 21 0.0 Metatranscriptome 3300016724 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011507AT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016724 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 224697387 481677 78 275 1608 3191 SRX3780726 Unrestricted 0.0 Metatranscriptome 3300032789 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_05JUN2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032789 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.372 63288639 106734 41 20 65 103 SRX7519518 Unrestricted 51.79 Metatranscriptome 3300021924 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-1M (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021924 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 137156211 232148 63 53 110 210 SRX5203086 Unrestricted 0.0 Metatranscriptome 3300046187 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_6_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046187 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 58477143 102118 1 1 18 0 Restricted 78.95 Metatranscriptome 3300030727 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB9_532_33.10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030727 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 77.9995 -150.0065 136159647 286647 107 40 430 1133 SRX6411894 Unrestricted 28.22 Metatranscriptome 3300030919 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E6_V_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030919 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 427451227 1389996 331 244 614 547 SRX3341706 Unrestricted 0.0 Metatranscriptome 3300059604 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 63R_AD_T2_R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059604 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 189523497 480865 364 249 1360 1574 Unrestricted 74.76 Metatranscriptome 3300017551 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in f/2 medium with seawater, 14 C, 36 psu salinity and 110 ?mol photons light - Ditylum brightwellii GSO103 (MMETSP1002) (SRX549031-SRR1294417) National Center for Genome Resources 3300017551 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 49.654 -127.436 5225160 10670 7 4 10 7 0.0 Metatranscriptome 3300000368 *Microbiome Draft Marine microbial communities from Delaware Coast Marine microbial communities from Delaware Coast, sample from Delaware MO Late spring/early summer DOE Joint Genome Institute (JGI) 3300000368 Metatranscriptome Analysis No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Neritic zone/Coastal water Marine Unclassified Marine 38.84917 -75.1076 6797816 22202 194 41 552 812 0.0 Metatranscriptome 3300037154 *Microbiome Permanent Draft Rumen fluid microbial communities from dairy cows in UC Davis, California, USA Metatranscriptome of rumen fluid microbial communities from dairy cow in UC Davis, California, USA - UCD_Rumen_Seaweed_2490 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300037154 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bmroque@ucdavis.edu Breanna Roque No Host-associated Mammals Stomach Digestive system Rumen fluid rumen fluid 38.5368 -121.7595 414095889 778059 3 71 170 317 Unrestricted 0.0 Metatranscriptome 3300031635 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031635 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 59.9979 10.7895 46125303 72092 7 24 13 118 SRX5808071 Unrestricted 27.24 Metatranscriptome 3300008767 *Microbiome Permanent Draft Microbial communities of mouse gut induced with colitis from Vienna, Austria Microbial communities of mouse gut induced with colitis from Vienna, Austria - 9969_ACTGT University of Vienna 3300008767 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Stomach Digestive system Forestomach Foregut of mice 42011944 136411 226 2 2009 26 SRX326436 0.0 Metatranscriptome 3300035621 *Microbiome Permanent Draft Sediment microbial communities from Lake Washington near Medina, WA, United States Metatranscriptome of methane-enriched sediment microbial communities from Lake Washington, WA, United States - HO-FL-FA-1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035621 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment sediment 47.6215 -122.2558 101315256 119615 8 59 21 82 SRX8379915 Unrestricted 105.49 Metatranscriptome 3300049090 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_23 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300049090 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 236984952 533808 236 49 607 251 Unrestricted 18.12 Metatranscriptome 2236347000 *Microbiome Permanent Draft Hydrothermal vent microbial communities from Guaymas and Carmen Basins, Gulf of California Hydrothermal vent plume microbial communities from the Guaymas Basin, Gulf of California - transcript assembly Pennsylvania State University 2236347000 Metatranscriptome Analysis Velvet-Oases No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent 27.823 -111.4 21125931 81452 13203 0 41948 0 0.0 Metatranscriptome 3300016823 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in L1 medium w/o silica, 20 C, 35 psu salinity and 734 ?mol photons light - Ostreococcus mediterraneus clade D RCC 2573 (MMETSP0936) National Center for Genome Resources 3300016823 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 3.6 43.4 12502268 11728 4 6 6 14 0.0 Metatranscriptome 3300012741 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES014 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012741 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 34194466 73031 175 50 3556 1198 SRX3526926 Unrestricted 0.0 Metatranscriptome 3300029276 *Microbiome Permanent Draft Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Sorghum rhizosphere microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B1.ctcc.R1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300029276 Metatranscriptome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes colemanderr@gmail.com; hwipf@berkeley.edu Devin Coleman-Derr; Edi Wipf No Host-associated Plants Rhizosphere Roots Unclassified sorghum rhizosphere 36.339058 -120.12031 36116671 65313 138 943 1487 3031 0.0 Metatranscriptome 3300052740 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Weichs, Bavaria, Germany - PB8_MT_250518 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052740 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 48.39537892 11.44760761 23143959 50754 14 10 345 24 Unrestricted 0.0 Metatranscriptome 3300023678 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLA4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023678 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 49.0427 13.6161 15001879 31624 107 182 1384 1219 SRX4455181 Unrestricted 31.56 Metatranscriptome 3300060345 *Microbiome Permanent Draft Sediment microbial communities from the PNNL SFA Hanford 300 Area, Columbia River, WA, USA Metatranscriptome of sediment microbial communities from the PNNL SFA Hanford 300 Area, Columbia River, WA, USA - Surf Sed A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300060345 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes eroden@geology.wisc.edu Eric Roden No Environmental Aquatic River Freshwater Sediment Sediment 46.467778 -119.464444 100326546 249005 370 623 3226 2915 Restricted 128.96 Metatranscriptome 3300030540 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Db2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030540 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 261354268 649192 130 170 1231 725 SRX4547301 Unrestricted 0.0 Metatranscriptome 3300017349 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine algae-associated eukaryotic communities from Gulf of Mexico in f/2 medium with seawater, 25 C, 36 psu salinity and 258 ?mol photons light - Karenia brevis Wilson (MMETSP0202) National Center for Genome Resources 3300017349 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Algae Unclassified Unclassified Unclassified marine algae-associated 72362841 120779 1 1 2 2 0.0 Metatranscriptome 3300008854 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_3026 Massachusetts Institute of Technology 3300008854 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 1813979 5960 6 2 244 443 0.0 Metatranscriptome 3300030641 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen10, Rep 2, Chloramphenicol (Eukaryote Community Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300030641 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 67073244 66575 3 4 7 4 SRX5087087, SRX5087088 Unrestricted 0.0 Metatranscriptome 3300005421 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom. Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel4S_1600h metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005421 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sgtringe@lbl.gov, rmmckay@bgsu.edu Susannah Tringe, Robert M. McKay No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.69957 -83.2941 309549260 842689 827 5527 2564 13215 SRX3195526 Unrestricted 0.0 Metatranscriptome 3300061829 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 55_hairyvetch_1_T5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061829 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 40559466 108187 87 90 797 769 Unrestricted 161.05 Metatranscriptome 3300031807 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen6, Rep 3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031807 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 11594061 23756 5 0 61 4 SRX5359901 Unrestricted 22.7 Metatranscriptome 3300052461 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 86-S41Day28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052461 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 136140422 275292 24 3 79 20 Unrestricted 57.34 Metatranscriptome 3300003710 *Microbiome Permanent Draft Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, for analyzing deforestation at different spatial scales Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003710 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes nusslein@microbio.umass.edu Nusslein, Klaus, Klaus Nusslein No Environmental Terrestrial Tropical forest Soil Unclassified Tropical rainforest soil -10.0 -62.0 4334833 9938 346 229 3020 718 SRX2518430 Unrestricted 0.0 Metatranscriptome 3300036654 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Omics_24_031718 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036654 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 236209655 513000 898 80 1851 1782 SRX8834692 Unrestricted 27.1 Metatranscriptome 3300046146 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-16 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046146 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4257 -64.7745 73507843 177077 643 38 1174 362 Unrestricted 23.01 Metatranscriptome 3300049547 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A25_A_5_drought (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049547 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 31415681 75490 107 61 336 405 Unrestricted 239.1 Metatranscriptome 3300018716 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_109 - TARA_N000001728 (ERX1789726-ERR1719299) Canada's Michael Smith Genome Sciences Centre 3300018716 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com Benjamin Tully No Environmental Aquatic Unclassified Marine Unclassified Marine 2.0299 -84.5546 113316265 283750 1 8 13 84 0.0 Metatranscriptome 3300050589 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_5B2_100218_1439 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050589 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@dbi.udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 261706885 596299 439 74 893 407 Unrestricted 53.97 Metatranscriptome 3300031481 *Microbiome Permanent Draft Soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_N_R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031481 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thb15@psu.edu Terrence Bell No Engineered Artificial ecosystem Surface biofilm Soil microcosm Unclassified soil 40.7997 -77.8629 96841339 215733 142 49 719 600 SRX5811538 Unrestricted 149.09 Metatranscriptome 3300016992 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Gulf of Mexico in GSe medium with ammonium, 22 C, 32 psu salinity and 202 ?mol photons light - Aureoumbra lagunensis CCMP 1510 (MMETSP0891) National Center for Genome Resources 3300016992 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Estuary marine 27.4708 -97.32 25953316 25202 3 6 2 9 0.0 Metatranscriptome 3300031083 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T18 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031083 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 24763101 48865 52 32 76 206 SRX5794464 Unrestricted 21.31 Metatranscriptome 3300013069 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - RNA 5th pass 37_C Kraft MG (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013069 Metatranscriptome Analysis megahit v. 1.0.6 No Yes jmgladden@lbl.gov John Gladden No Environmental, Engineered Terrestrial, Solid waste Composting Soil, Mixed feedstock Commercial compost compost 37.83 -122.29 58163437 121268 3 7 113 45 SRX3902041 Unrestricted 0.0 Metatranscriptome 3300024556 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepB_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024556 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 193585326 393883 79 256 1032 1816 SRX4547761 Unrestricted 21.33 Metatranscriptome 3300010019 *Microbiome Permanent Draft Black Band Disease transitions Microbial communities of stony corals with Black-band disease (BBD) from Carrie Bow Cay Field Station, Belize; BBD Transitions coral #1 sample T1 University of Maryland 3300010019 Metatranscriptome Analysis IDBA-Tran v1.1.1 released per JGI data release policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified marine 16.80288 -88.08213 246772845 399186 4 5 16 28 0.0 Metatranscriptome 3300016845 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from San Francisco Bay, USA in L1 medium with NH4Cl, 20 C, 32 psu salinity and 587 ?mol photons light - Picocystis salinarum CCMP 1897 (MMETSP1159) National Center for Genome Resources 3300016845 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.78 -122.35 10438289 13401 19 14 27 24 0.0 Metatranscriptome 3300008297 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.1ln.5.15dpc CCME-COLORADO 3300008297 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 955042 4343 31 0 570 7 0.0 Metatranscriptome 3300008376 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34696 J. Craig Venter Institute (JCVI) 3300008376 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 10422 22 0 0 0 0 0.0 Metatranscriptome 3300009860 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 5, Depth 12m; RNA IDBA-UD Marine Biological Laboratory 3300009860 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 6.94 185394329 455303 2504 61 10982 263 0.0 Metatranscriptome 3300046634 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-217 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046634 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4604 -64.2162 223211950 523659 673 44 1244 682 Unrestricted 21.24 Metatranscriptome 3300041866 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_387 MetaT AgResearch, New Zealand, Mosgeil 3300041866 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 10544035 21620 177 125 913 217 0.0 Metatranscriptome 3300013052 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013052 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil corn rhizosphere 42.3948 -85.3738 26967676 64644 188 679 17875 5295 SRX4062847, SRX4062846 Unrestricted 0.0 Metatranscriptome 3300032597 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow Y-1 switchgrass (Eukaryote Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032597 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 40.102108 -88.227299 73539334 145545 6 37 22 82 SRX5780735 Unrestricted 0.0 Metatranscriptome 3300018791 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_082 - TARA_N000001390 (ERX1782108-ERR1712085) Canada's Michael Smith Genome Sciences Centre 3300018791 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -47.2002 -58.2034 157842283 397379 111 16 237 218 0.0 Metatranscriptome 3300031121 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean transect - DeepDOM_S15_Trap_metaT (Eukaryote Community Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300031121 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -2.7 -28.5 594018087 1095215 3 80 651 698 SRX2754530 Unrestricted 0.0 Metatranscriptome 3300004976 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP1603 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004976 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -11.24 -172.63 149999754 417017 845 1141 2704 3182 SRX3299151 Unrestricted 0.0 Metatranscriptome 3300008439 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy - t20.CR.RNAseq.exp1 University of Naples 3300008439 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Cheese 20674 75 7 0 60 1 0.0 Metatranscriptome 3300041901 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass leaf microbial community from Lincoln, Canterbury, New Zealand - RGL17_6 MetaT_extra_run AgResearch, New Zealand, Mosgeil 3300041901 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 905131 1669 64 172 168 201 0.0 Metatranscriptome 3300018874 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_085 - TARA_N000001024 (ERX1809749-ERR1740115) Canada's Michael Smith Genome Sciences Centre 3300018874 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -62.0385 -49.529 229662510 560467 45 14 63 123 0.0 Metatranscriptome 3300046427 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_13_Control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046427 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1892 -81.3618 102435803 241031 558 189 2119 1126 Unrestricted 114.04 Metatranscriptome 3300033524 *Microbiome Permanent Draft Rhizosphere microbial communities from salt marsh grasses in Alabama, United States Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300033524 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes omason@fsu.edu Olivia Mason No Host-associated Plants Rhizosphere Roots Unclassified rhizosphere 30.2619 -88.2383 278948706 597849 496 1866 6259 7466 SRX7525042 Unrestricted 18.38 Metatranscriptome 3300031052 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E4_X_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031052 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 316789562 968182 485 325 941 904 SRX3341239 Unrestricted 0.0 Metatranscriptome 3300017200 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in JM medium, at 23 C, 0 psu salinity and 285 ?mol photons light - Cryptomonas curvata CCAP 979/52 (MMETSP1050) National Center for Genome Resources 3300017200 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 34455691 54291 2 7 8 8 0.0 Metatranscriptome 3300018965 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_149 - TARA_N000002141 Canada's Michael Smith Genome Sciences Centre 3300018965 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 34.0823 -49.8695 394146566 780642 5 91 27 344 0.0 Metatranscriptome 3300017088 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no silicate, 15 C, 15 psu salinity and 104 ?mol photons light - Heterosigma akashiwo CCMP 3107 (MMETSP0410) National Center for Genome Resources 3300017088 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 52.5758 -128.5003 21103710 42261 29 2 48 1 0.0 Metatranscriptome 3300046561 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - P3-R1-B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046561 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.0477 198933760 447721 96 189 530 722 Unrestricted 38.31 Metatranscriptome 3300009834 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 2, 6m depth; RNA IDBA-UD Marine Biological Laboratory 3300009834 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 6.49 10411857 25052 734 248 3242 537 0.0 Metatranscriptome 3300021287 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.380 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021287 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.27 -123.946 43682086 90804 597 1897 13149 9482 SRX4016214 Unrestricted 0.0 Metatranscriptome 3300031069 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T19 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031069 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 22795760 45079 145 76 204 475 SRX5352190 Unrestricted 26.5 Metatranscriptome 3300030848 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA8 EcM (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030848 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7184 6.3471 545891824 1657246 7110 1997 16244 6561 SRX3350684 Unrestricted 0.0 Metatranscriptome 3300018990 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_011 - TARA_X000001334 (ERX1782458-ERR1711911) Canada's Michael Smith Genome Sciences Centre 3300018990 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 41.6666 2.7962 533967557 917421 2 25 7 154 0.0 Metatranscriptome 3300009677 *Microbiome Permanent Draft Marine eukaryotic communities from various locations to study complex ecological interactions Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_70_C50_10m_0.8um Metatranscriptome (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009677 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes azworden@mbari.org; twoyke@lbl.gov Alexandra Worden; Tanja Woyke No Environmental Aquatic Oceanic Marine Unclassified Marine 36.1275 -123.299 800977295 1574827 429 54 903 525 SRX7203900 Unrestricted 0.0 Metatranscriptome 3300021923 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-8M (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021923 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 142782512 251599 91 69 150 261 SRX5203105 Unrestricted 0.0 Metatranscriptome 3300059603 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 62R_AD_T2_R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059603 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 24584396 64854 99 111 340 735 Unrestricted 57.9 Metatranscriptome 3300030999 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 7 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030999 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr; ake.olson@slu.se Francis M. Martin; Ake Olson No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 522132097 1253580 697 385 1409 699 SRX3344959 Unrestricted 0.0 Metatranscriptome 3300041906 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover leaf microbial community from Lincoln, Canterbury, New Zealand - WCL18_12 MetaT_extra_run AgResearch, New Zealand, Mosgeil 3300041906 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 13469280 22263 208 273 635 507 0.0 Metatranscriptome 3300008882 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_2031 Massachusetts Institute of Technology 3300008882 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 3269108 10894 9 4 281 565 0.0 Metatranscriptome 3300018637 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_072 - TARA_N000000837 (ERX1782121-ERR1712056) Canada's Michael Smith Genome Sciences Centre 3300018637 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.6831 -18.0095 64856615 182975 113 32 544 914 0.0 Metatranscriptome 3300016824 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in F/2 medium with silicate, 1mM nitrate, at 15 C, 35 psu salinity and 607 ?mol photons light - Amphora coffeaeformis CCMP 127 (MMETSP0318_2) National Center for Genome Resources 3300016824 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 19031563 23965 2 1 1 1 0.0 Metatranscriptome 3300023567 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 80R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023567 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 55256111 115500 30 11 259 475 SRX4475884 Unrestricted 23.22 Metatranscriptome 3300006588 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Met_03_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006588 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 96919744 257793 278 451 1667 1138 SRX2752328 Unrestricted 0.0 Metatranscriptome 3300046566 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - P1-R3-B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046566 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.355 19.0438 91542670 217922 202 113 662 670 Unrestricted 40.27 Metatranscriptome 3300009555 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 5, Depth 8m; RNA IDBA-UD Marine Biological Laboratory 3300009555 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 6.57 12167573 31984 1042 141 5780 451 0.0 Metatranscriptome 3300039302 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Metatranscriptome of coal bed microbial communities from the Powder River Basin, Montana, United States - T1YRFG11RNAD (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300039302 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Aquatic Groundwater Deep subsurface Coalbed methane well water coal bed water 45.4351 -106.3918 97103850 188302 34 27 525 87 Unrestricted 0.0 Metatranscriptome 3300032730 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Plim7_22May_deep (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032730 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 766820621 1358804 12 9 34 182 SRX6411382 Unrestricted 0.0 Metatranscriptome 3300046085 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-211 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046085 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4604 -64.2162 127506188 295836 585 27 1068 529 Unrestricted 18.97 Metatranscriptome 3300024896 *Microbiome Permanent Draft Anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States Metatranscriptome of anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States - LAC_MetaT_10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024896 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes alvarez@ce.berkeley.edu Lisa Alvarez-Cohen No Engineered Bioreactor Unclassified Anaerobic Unclassified anaerobic bioreactor biomass 37.8719 -122.2585 17693436 31671 15 3 252 22 SRX4391790 Unrestricted 0.0 Metatranscriptome 3300035572 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - 8K (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035572 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4336 16.6836 122339659 259972 382 573 3073 2167 SRX8209127 Unrestricted 27.6 Metatranscriptome 3300019207 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - R.871 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019207 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.216 -123.78 99105613 214159 75 285 393 4492 Unrestricted 0.0 Metatranscriptome 3300008853 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_2020 Massachusetts Institute of Technology 3300008853 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 4136041 13657 15 5 419 619 0.0 Metatranscriptome 3300021892 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S15 C1 B20 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021892 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 44.279789 -12.60983 95337883 179904 91 37 184 150 SRX5204345 Unrestricted 0.0 Metatranscriptome 3300024551 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Miss_RepB_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024551 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 176052052 353904 43 146 684 1053 SRX4547802 Unrestricted 26.58 Metatranscriptome 3300036653 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Omics16_030918 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036653 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 254110935 553108 625 81 1190 1539 SRX8834687 Unrestricted 28.71 Metatranscriptome 3300031126 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E6_Q_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031126 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 625338567 1976670 616 400 1125 981 SRX3341595 Unrestricted 0.0 Metatranscriptome 3300011067 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 41 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011067 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 69728422 161333 115 269 9374 1587 Unrestricted 0.0 Metatranscriptome 3300016912 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/4 medium with seawater, at 20 C, 34 psu salinity and 665 ?mol photons light - unclassified eukaryote D1 (MMETSP0086_2) National Center for Genome Resources 3300016912 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 15416879 30042 17 17 57 35 0.0 Metatranscriptome 3300011110 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 65 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011110 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 157845073 353811 172 402 11849 2001 Unrestricted 0.0 Metatranscriptome 3300004971 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 41 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004971 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 109881614 336210 4437 2160 16975 5082 Unrestricted 0.0 Metatranscriptome 3300038167 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_OW2_C1_D6_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038167 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 67793136 147907 211 241 2608 675 SRX9390611 Unrestricted 251.44 Metatranscriptome 3300018805 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_125 - TARA_N000002019 (ERX1789361-ERR1719395) Canada's Michael Smith Genome Sciences Centre 3300018805 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -8.9111 -142.5571 176529514 430873 24 20 70 290 0.0 Metatranscriptome 3300031614 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRI4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031614 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 59.9992 10.7901 64324536 105007 21 27 37 114 SRX5807947 Unrestricted 20.36 Metatranscriptome 3300018796 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_004 - TARA_X000000410 (ERX1789505-ERR1719432) Canada's Michael Smith Genome Sciences Centre 3300018796 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 36.5533 -6.5669 166133238 419770 10 29 28 220 0.0 Metatranscriptome 3300012415 *Microbiome Permanent Draft Polar marine prokaryotic and eukaryotic communities from Antarctica during spring seasonal transition Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Arthur Harbor ice station, Antarctica - RNA15.ICE_1m.20151115 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012415 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bowmanjs@ldeo.columbia.edu Jeff Bowman Yes Environmental Aquatic Unclassified Marine Unclassified Polar marine -64.7711 -64.056 512337905 1065917 698 312 6460 12450 SRX3379701 Unrestricted 0.0 Metatranscriptome 3300004507 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_133SG_5_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004507 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 58090709 158550 11826 5979 25984 13472 SRX2568631 Unrestricted 0.0 Metatranscriptome 3300046249 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_2_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046249 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 45304713 70330 1 9 75 57 Restricted 461.23 Metatranscriptome 3300008371 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34692 J. Craig Venter Institute (JCVI) 3300008371 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 69519 294 0 0 8 0 0.0 Metatranscriptome 3300026418 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 12R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026418 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 120380330 223933 107 19 240 420 SRX4783587 Unrestricted 31.37 Metatranscriptome 3300052466 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 114-S77Day28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052466 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 125404429 246636 30 4 111 103 Unrestricted 86.76 Metatranscriptome 3300010099 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_16_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010099 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 58008195 134899 124 648 18768 5545 Unrestricted 0.0 Metatranscriptome 3300012787 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES026 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012787 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 46515323 98365 205 70 3361 1674 SRX3527147 Unrestricted 0.0 Metatranscriptome 3300008535 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.8.4OB.15dpc CCME-COLORADO 3300008535 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 497669 2169 15 1 455 6 0.0 Metatranscriptome 3300010917 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS917_55_13C_TP1_8 Marine Biological Laboratory 3300010917 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 2510603 5844 122 4 398 10 0.0 Metatranscriptome 3300018549 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS675_0p8 J. Craig Venter Institute (JCVI) 3300018549 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 62.09708 18.5427 4713492 15742 13 12 437 339 0.0 Metatranscriptome 3300059675 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_15 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059675 Metatranscriptome Analysis megahit v. 2021-11-19 00:35:18 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 536448267 1209627 407 117 1317 526 Unrestricted 0.0 Metatranscriptome 3300022195 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022195 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified groundwater sediment 38.9201 -106.9487 407935644 956867 115 974 3098 6875 SRX4394563 Unrestricted 0.0 Metatranscriptome 3300046633 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-203 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046633 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4199 -64.1151 231765516 546394 490 30 899 466 Unrestricted 20.31 Metatranscriptome 3300017242 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine host-associated eukaryotic communities from Pacific Ocean in inside host, 26 C, 35 psu salinity and 370 ?mol photons light - Symbiodinium sp. C15 (MMETSP1370) National Center for Genome Resources 3300017242 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Microbial Unclassified Dinoflagellates Unclassified marine host-associated 42867616 62911 31 34 54 69 SRX554275 0.0 Metatranscriptome 3300022502 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-O (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022502 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 74868854 172290 689 824 10745 5036 SRX4401203 Unrestricted 0.0 Metatranscriptome 3300031486 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031486 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7043 9804606 20685 43 25 79 144 SRX5793954, SRX5793955 Unrestricted 0.0 Metatranscriptome 3300018711 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_143 - TARA_N000003139 (ERX1782287-ERR1712099) Canada's Michael Smith Genome Sciences Centre 3300018711 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 29.7186 -79.6636 117817320 300429 151 42 577 531 0.0 Metatranscriptome 3300032517 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red4_24May_deep (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032517 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 1042441141 1841349 17 6 23 177 SRX6410114 Unrestricted 19.2 Metatranscriptome 3300046141 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-162 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046141 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4757 -64.2279 70492938 169268 722 35 1239 476 Unrestricted 26.11 Metatranscriptome 3300028081 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepC_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028081 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 116199598 226783 54 98 145 495 SRX5245734 Unrestricted 30.12 Metatranscriptome 3300041668 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_148 MetaT AgResearch, New Zealand, Mosgeil 3300041668 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 52046878 116336 144 43 1386 116 0.0 Metatranscriptome 3300003260 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment ColumnT-3K5-0 454 Life Sciences 3300003260 Metatranscriptome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.342219 40.479289 6-8 0 0 0 0 0 0 0.0 Metatranscriptome 3300034482 *Microbiome Permanent Draft Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S02 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034482 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes colin.averill@usys.ethz.ch Colin Averill No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 36.0 -78.0 57060114 125463 3 57 162 254 SRX7586097 Unrestricted 172.1 Metatranscriptome 3300036507 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5SP15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036507 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 74711510 154690 583 1303 3850 4719 SRX8379496 Unrestricted 32.34 Metatranscriptome 3300000210 *Microbiome Permanent Draft Sheep rumen microbial communities from New Zealand from high and low methane emitting sheep Sheep rumen microbial communities from New Zealand - Low methane emitting sheep DOE Joint Genome Institute (JGI) 3300000210 Metatranscriptome Analysis velvet Released because it is in Genbank already No Yes nckyrpides@lbl.gov Nikos Kyrpides No Host-associated Mammals Stomach Digestive system Rumen Sheep rumen -45.483333 170.716667 212657803 436555 515 42 960 52 0.0 Metatranscriptome 3300018873 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_093 - TARA_N000001098 Canada's Michael Smith Genome Sciences Centre 3300018873 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -33.9116 -73.0537 276583010 544253 89 39 291 418 0.0 Metatranscriptome 3300033523 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_18SEP2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300033523 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3951 -85.3736 517984992 905905 250 197 434 1065 SRX7706900 Unrestricted 31.33 Metatranscriptome 3300046300 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_6_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046300 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 64563849 107934 1 0 28 0 Restricted 109.07 Metatranscriptome 3300003295 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 67 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003295 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 22572969 63740 126 351 1615 1675 Unrestricted 0.0 Metatranscriptome 3300043825 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA74b (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043825 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Unclassified Soil Unclassified soil 35.7877 -78.6442 48297723 108028 332 395 1919 2253 Unrestricted 44.43 Metatranscriptome 3300009833 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 2, 3m depth; RNA IDBA-UD Marine Biological Laboratory 3300009833 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 8.25 7488291 19539 439 432 2560 1831 0.0 Metatranscriptome 3300029271 *Microbiome Permanent Draft Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Soil microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B1.stno.R1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300029271 Metatranscriptome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes colemanderr@gmail.com Devin Coleman-Derr No Environmental Terrestrial Unclassified Soil Agricultural land Field Soil 36.339058 -120.12031 11661077 22227 403 1038 3040 3087 0.0 Metatranscriptome 3300012746 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES049 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012746 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 55342843 111452 122 104 860 1989 SRX3010817 Unrestricted 0.0 Metatranscriptome 3300035626 *Microbiome Permanent Draft Sediment microbial communities from Lake Washington near Medina, WA, United States Metatranscriptome of methane-enriched sediment microbial communities from Lake Washington, WA, United States - LO-FA-1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035626 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment sediment 47.6215 -122.2558 67989366 111876 3 1 7 2 SRX8380051 Unrestricted 317.95 Metatranscriptome 3300018958 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_144 - TARA_N000003191 Canada's Michael Smith Genome Sciences Centre 3300018958 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 36.345 -72.7586 510002792 1092422 18 158 43 720 0.0 Metatranscriptome 3300028850 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Leu1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028850 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 55154066 110890 15 10 211 50 SRX5356195 Unrestricted 88.34 Metatranscriptome 3300016684 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES068 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016684 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 46.041 -89.686 59094570 105767 68 51 1846 2340 SRX3780226 Unrestricted 0.0 Metatranscriptome 3300036180 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of sediment microbial communities from Prado wetlands, California, USA - CSM_Prado_Oct18_AM2_1.5z2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036180 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 47777421 91410 70 204 765 882 SRX8771443 Unrestricted 42.17 Metatranscriptome 3300052442 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 39-S49Day7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052442 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 120954716 214353 27 1 83 11 Unrestricted 112.67 Metatranscriptome 3300045461 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P24SSC2_190915_c (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300045461 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 51255770 126607 114 292 1323 1417 SRX20650984 Unrestricted 208.01 Metatranscriptome 3300018556 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_080 - TARA_N000001478 (ERX1789635-ERR1719475) Canada's Michael Smith Genome Sciences Centre 3300018556 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -40.6511 -52.182 12106153 28637 1 3 3 30 0.0 Metatranscriptome 3300046606 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-89 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046606 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4413 -64.1645 85670830 209824 714 31 1137 389 Unrestricted 16.52 Metatranscriptome 3300029597 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Leu1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029597 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 39936185 77376 3 1 100 3 SRX5356206 Unrestricted 47.95 Metatranscriptome 3300018774 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_076 - TARA_B100000513 Canada's Michael Smith Genome Sciences Centre 3300018774 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -21.0073 -35.3344 105540715 382932 154 60 331 742 0.0 Metatranscriptome 3300030662 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 10_T1E_StrKB8 developmental time series (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030662 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 63560572 89588 25 46 568 561 SRX4645942 Unrestricted 0.0 Metatranscriptome 3300003550 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA Grassland soil microbial communities from Hopland, California, USA - Sample H3_Bulk_41 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003550 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes pettridge2@llnl.gov, nuccio1@llnl.gov; pettridge2@llnl.gov Jennifer Pett-Ridge, Erin Nuccio; Jennifer Pett-Ridge No Environmental Terrestrial Grasslands Soil Bulk soil Avena fatua rhizosphere 38.972988 -123.116539 13276750 32289 86 174 891 1153 SRX2563667 Unrestricted 0.0 Metatranscriptome 3300050363 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T1_1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050363 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 269668874 444918 27 21 105 86 Unrestricted 64.58 Metatranscriptome 3300017266 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium w/o silicate, 20 C, 35 psu salinity and 702 ?mol photons light - Amphidinium massartii CS-259 (MMETSP0689_2) National Center for Genome Resources 3300017266 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine -17.0 146.0 67861537 70485 1 4 2 3 0.0 Metatranscriptome 3300053782 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 29 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053782 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 42.4295 -81.2044 6467443 9522 2 3 22 12 Restricted 0.0 Metatranscriptome 3300030748 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Litter C3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030748 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ake.olson@slu.se; fmartin1954@me.com Ake Olson; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 533950937 1518337 638 160 1471 468 SRX3345336 Unrestricted 0.0 Metatranscriptome 3300017351 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Gulf of Mexico in L1 medium, 22 C, 32 psu salinity and 304 ?mol photons light - Karenia brevis CCMP 2229 (MMETSP0031) National Center for Genome Resources 3300017351 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 27.0171 -82.4763 91552359 123618 1 6 3 3 0.0 Metatranscriptome 3300009734 *Microbiome Permanent Draft Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling - T0-HHNH4 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009734 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes milachis@u.washington.edu Ludmila Chistoserdova No Engineered Modeled Plant nodule Simulated communities (microbial mixture) Unclassified Methane-oxidizing 47.6193 -122.2449 66303678 117080 1 0 763 8 SRX2525426 Unrestricted 0.0 Metatranscriptome 3300007594 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S14 DCM2_B metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007594 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 67542494 210113 2227 2155 5512 8203 SRX2522156 Unrestricted 0.0 Metatranscriptome 3300017184 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 25 C, 35 psu salinity and 700 ?mol photons light - Bigelowiella natans CCMP 2755 (MMETSP0045_2) National Center for Genome Resources 3300017184 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 33388269 50434 9 9 23 24 0.0 Metatranscriptome 3300016745 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041411BS metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016745 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 612844728 1242610 17 26 345 430 SRX3781475 Unrestricted 0.0 Metatranscriptome 3300002343 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI - F_92min_Anaerobic (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002343 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes tmcmahon@cae.wisc.edu, tmcmahon@engr.wisc.edu; tmcmahon@cae.wisc.edu Sludge Phage users, Katherine McMahon; Trina McMahon Yes 20148930, 26555245 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.078418 -89.386482 178379873 302505 13 56 36 183 SRX2554572 Unrestricted 0.0 Metatranscriptome 3300049528 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049528 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 219234852 514301 322 193 1724 1219 Unrestricted 59.47 Metatranscriptome 3300035098 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_122 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035098 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.920406 -106.94828662 815277380 1852053 436 139 1070 1092 SRX7715530 Unrestricted 14.35 Metatranscriptome 3300037680 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Metatranscriptome of soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_July_plot3_rep3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037680 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6591 -80.6279 307287419 687295 900 519 5410 2680 SRX9139682 Unrestricted 45.2 Metatranscriptome 3300052327 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_8A1_100318_0845 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052327 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@dbi.udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 54847804 136542 283 49 614 294 Unrestricted 299.33 Metatranscriptome 3300050389 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T4_1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050389 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 230788687 382166 29 14 116 77 Unrestricted 99.68 Metatranscriptome 3300010132 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_16_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010132 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 84255527 200976 48 453 5177 3875 Unrestricted 0.0 Metatranscriptome 3300009025 *Microbiome Permanent Draft Eukaryotic communities from seawater of the North Pacific Subtropical Gyre Eukaryotic communities from seawater of the North Pacific Subtropical Gyre - HoeDylan_S2 Woods Hole Oceanographic Institution 3300009025 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ocean water 22.75 -158.0 1997575493 8339493 157 189 981 2177 0.0 Metatranscriptome 3300012759 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES158 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012759 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 119290365 250983 194 293 2427 4207 SRX3527196 Unrestricted 0.0 Metatranscriptome 3300017549 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 7 C, 32 psu salinity and 151 ?mol photons light - Thalassionema nitzschioides (MMETSP0693) (SRX566754-SRR1328074) National Center for Genome Resources 3300017549 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 41.325 -70.5667 3067521 9484 8 3 20 9 0.0 Metatranscriptome 3300048097 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P12SS CTRL_191116_c (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048097 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 38119809 88612 161 232 1548 1259 SRX20649822 Unrestricted 265.61 Metatranscriptome 3300012762 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES046 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012762 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 130338552 261912 104 106 752 2398 SRX3010754 Unrestricted 0.0 Metatranscriptome 3300041766 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_60 MetaT AgResearch, New Zealand, Mosgeil 3300041766 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 2013136 3971 73 56 387 89 0.0 Metatranscriptome 3300007217 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S10 NT17 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007217 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 100535059 301769 2111 5259 5733 11611 SRX3196635 Unrestricted 0.0 Metatranscriptome 3300011082 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 4 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011082 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 102335775 237932 215 452 16941 2531 Unrestricted 0.0 Metatranscriptome 3300008576 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-12 University of Hawaii 3300008576 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 1023063 1425 4 1 110 16 0.0 Metatranscriptome 3300023553 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRE3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023553 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 49.0431 13.617 23238065 34907 22 34 467 268 SRX4454966 Unrestricted 26.14 Metatranscriptome 3300011324 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S17 DCM_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011324 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 122459842 289646 148 82 3268 3027 SRX3787215 Unrestricted 0.0 Metatranscriptome 3300017026 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in 0.2u filtered seawater with ES enrichments, Urea, 15 C, 33 psu salinity and 97 ?mol photons light - Pseudo-nitzschia australis 10249 10 AB (MMETSP0141_2) National Center for Genome Resources 3300017026 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 36.60369 -121.88927 28065392 28905 4 1 11 1 0.0 Metatranscriptome 3300018816 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_111 - TARA_N000001814 (ERX1789388-ERR1719355) Canada's Michael Smith Genome Sciences Centre 3300018816 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -16.9587 -100.6751 183881423 459143 1 15 23 93 0.0 Metatranscriptome 3300019019 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_137 - TARA_N000002929 Canada's Michael Smith Genome Sciences Centre 3300019019 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 14.1927 -116.6474 556423926 1138311 1 21 9 210 0.0 Metatranscriptome 3300012406 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012406 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 202864214 494704 76 678 8701 6595 Unrestricted 0.0 Metatranscriptome 3300037058 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp03_R77 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037058 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 289830101 576749 291 88 593 1037 SRX8841445 Unrestricted 34.18 Metatranscriptome 3300008314 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - PM72.FECAL.14dpc CCME-COLORADO 3300008314 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 4979471 20224 67 1 1187 17 0.0 Metatranscriptome 3300046256 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_2_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046256 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 40709215 73181 5 35 107 149 Restricted 192.8 Metatranscriptome 3300037772 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - F19MarF (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037772 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4202 16.665 37406798 71768 84 241 1432 1012 SRX9166057 Unrestricted 49.36 Metatranscriptome 3300041915 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover leaf microbial community from Lincoln, Canterbury, New Zealand - WCL18_8 MetaT_extra_run AgResearch, New Zealand, Mosgeil 3300041915 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 1112890 2082 58 87 205 150 0.0 Metatranscriptome 3300032889 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_07AUG2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032889 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.3757 181382912 322932 149 131 248 686 SRX7519790 Unrestricted 42.89 Metatranscriptome 3300009265 *Microbiome Permanent Draft Eukaryotic communities of water from Amazon river, Brazil and North Atlantic ocean Eukaryotic communities of water from the North Atlantic ocean - ACM8 University of Georgia 3300009265 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 259844804 616963 3 0 7 4 0.0 Metatranscriptome 3300018698 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_080 - TARA_N000001473 (ERX1809465-ERR1739846) Canada's Michael Smith Genome Sciences Centre 3300018698 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -40.6154 -51.9351 114665207 260035 14 10 55 184 0.0 Metatranscriptome 3300008393 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34709 J. Craig Venter Institute (JCVI) 3300008393 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 16212 24 0 0 0 0 0.0 Metatranscriptome 3300038153 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_M1_C1_D6_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038153 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 21840550 44225 256 139 4611 443 SRX9390231 Unrestricted 262.61 Metatranscriptome 3300030827 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030827 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 26517532 48021 39 13 83 83 SRX5794601 Unrestricted 16.8 Metatranscriptome 3300031570 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB9_547_5m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031570 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 77.9995 -150.0065 79680673 161101 113 31 140 601 SRX5653260 Unrestricted 0.0 Metatranscriptome 3300011053 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 9 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011053 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 40515215 99183 112 294 7255 1859 Unrestricted 0.0 Metatranscriptome 3300041508 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaT AgResearch, New Zealand, Mosgeil 3300041508 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Unclassified Roots Unclassified White clover root -43.648506 172.343549 23424751 52367 187 36 1220 86 0.0 Metatranscriptome 3300026392 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0906-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026392 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 59152766 116137 24 61 187 208 SRX4664275 Unrestricted 93.54 Metatranscriptome 3300046448 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_94_Control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046448 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1371 -81.365 40397733 90158 136 124 935 673 Unrestricted 47.04 Metatranscriptome 3300008867 *Microbiome Permanent Draft Microbial communities from harbor seals stranded along the coast of California, USA Microbial communities from harbor seals stranded along the coast of California, USA - UCD1 Oregon State University 3300008867 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Brain Nervous system Unclassified Harbor seal brain 37.8592 -122.4853 306714831 578942 6 9 252 60 ERX1190553 0.0 Metatranscriptome 3300016723 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041405ZT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016723 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 224421392 477895 119 285 1341 3813 SRX3781458 Unrestricted 0.0 Metatranscriptome 3300010420 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS5_30_TP1_13L Marine Biological Laboratory 3300010420 Metatranscriptome Analysis CLC genomics wb7 released per JGI data release policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933 -130.014 839528 2767 148 8 252 24 0.0 Metatranscriptome 3300023564 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023564 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 49.0427 13.6161 35203213 51376 13 20 133 150 SRX4454777 Unrestricted 23.16 Metatranscriptome 3300011030 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 83 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011030 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 18113212 45185 32 78 2204 523 Unrestricted 0.0 Metatranscriptome 3300016827 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in L1 medium w/o silica, 20 C, 35 psu salinity and 691 ?mol photons light - Ostreococcus mediterraneus clade D RCC 1107 (MMETSP0938) National Center for Genome Resources 3300016827 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 3.145 42.488 12935809 11745 6 5 10 17 0.0 Metatranscriptome 3300018634 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_020 - TARA_A100000759 (ERX1782198-ERR1712237) Canada's Michael Smith Genome Sciences Centre 3300018634 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 34.4064 15.043 94937913 190603 2 31 8 120 0.0 Metatranscriptome 3300019092 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_052 - TARA_N000000585 (ERX1782296-ERR1712033) Canada's Michael Smith Genome Sciences Centre 3300019092 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -16.9538 54.0043 58318347 125820 2 28 11 139 0.0 Metatranscriptome 3300008763 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_3041 Massachusetts Institute of Technology 3300008763 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 1501771 4792 2 3 198 459 0.0 Metatranscriptome 3300037055 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Omics_22_031718 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037055 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 386250655 827496 862 77 1645 1453 SRX8834690 Unrestricted 23.54 Metatranscriptome 3300028290 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 25R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028290 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 283941256 604680 193 43 285 463 SRX5172085 Unrestricted 24.56 Metatranscriptome 3300004132 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF240 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004132 Metatranscriptome Analysis megahit v. 0.2.0 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.531427 -72.189946 69264231 249906 3962 1139 12823 3514 SRX2014014 Unrestricted 0.0 Metatranscriptome 3300048845 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Metatranscriptome of soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR23 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048845 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.3476 -119.2808 30308369 41679 8 1 12 2 Unrestricted 78.45 Metatranscriptome 3300038286 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_N3_C1_D6_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038286 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 42342115 92791 276 213 6116 664 SRX9391071 Unrestricted 232.14 Metatranscriptome 3300007179 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_B4R_H (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007179 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 55034535 192163 3055 3815 9715 10657 SRX2522143 Unrestricted 0.0 Metatranscriptome 3300030723 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - AG5_1301_Surface (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030723 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 70.5467 -122.9077 65846466 131959 176 30 203 767 SRX5651219 Unrestricted 17.04 Metatranscriptome 3300046183 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_6_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046183 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 54532155 92988 2 1 17 0 Restricted 158.44 Metatranscriptome 3300002586 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS903_55_12L 3300002586 Metatranscriptome Analysis released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 1421880 3550 118 4 346 8 0.0 Metatranscriptome 3300004504 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004504 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 42857777 150546 4652 1412 15215 3055 Unrestricted 0.0 Metatranscriptome 3300046445 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_90_Control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046445 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1239 -81.3598 25805543 59401 116 133 1107 734 Unrestricted 72.13 Metatranscriptome 3300049130 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_B_0_control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049130 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 159288575 382701 321 155 1284 1066 Unrestricted 52.84 Metatranscriptome 3300049543 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F12_A_4_control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049543 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 40320458 96374 87 76 339 430 Unrestricted 235.61 Metatranscriptome 3300018561 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS684_0p8 J. Craig Venter Institute (JCVI) 3300018561 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 7902973 36032 14 6 126 198 0.0 Metatranscriptome 3300018660 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000589 (ERX1782392-ERR1711993) Canada's Michael Smith Genome Sciences Centre 3300018660 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 35.7528 14.2765 98621321 220483 14 19 53 314 0.0 Metatranscriptome 3300031617 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_L6_32mM_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031617 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 29290071 43212 1 0 2 8 SRX5783508 Unrestricted 40.5 Metatranscriptome 3300038164 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_OW2_C1_D3_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038164 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 56819545 119912 284 241 3018 671 SRX9390608 Unrestricted 237.62 Metatranscriptome 3300011064 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 2 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011064 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 64637646 152223 175 464 14133 1983 Unrestricted 0.0 Metatranscriptome 3300047411 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81956b46-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047411 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 214624299 543806 275 231 1441 1378 Unrestricted 65.27 Metatranscriptome 3300017366 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Narragansett Bay in marine media K with soil extract, 1:100 phosphorous, 18 C, 35 psu salinity and 409 ?mol photons light - Eutreptiella gymnastica CCMP 1594 (MMETSP0811_2) National Center for Genome Resources 3300017366 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 41.6 -71.4 55158681 81739 21 7 44 14 0.0 Metatranscriptome 3300008789 *Microbiome Permanent Draft Microbial communities of hydrothermal vent plumes from the Guaymas Basin in the Gulf of California Microbial communities of hydrothermal vent plumes from the Guaymas Basin in the Gulf of California - Background GD7i University of Michigan 3300008789 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent in Guaymas Basin in the Gulf of California 29233890 126882 461 230 7675 3460 0.0 Metatranscriptome 3300046152 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-91 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046152 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4413 -64.1645 38226777 87843 308 47 577 833 Unrestricted 30.46 Metatranscriptome 3300017251 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in f/2 medium, 18 C, 35 psu salinity and 109 ?mol photons light - Thalassiosira rotula CCMP 3096 (MMETSP0404_2) National Center for Genome Resources 3300017251 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 49.65 -127.4338 37289054 41055 3 4 7 3 0.0 Metatranscriptome 3300006679 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Deep ocean microbial communities from the Global Malaspina Expedition - Deep seawater metaT blank (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006679 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Marine 1420032 5161 544 71 1006 185 SRX3203232 Unrestricted 0.0 Metatranscriptome 3300009268 *Microbiome Permanent Draft Eukaryotic communities of water from Amazon river, Brazil and North Atlantic ocean Eukaryotic communities of water from the North Atlantic ocean - ACM43 University of Georgia 3300009268 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 150466108 423754 4 1 8 4 0.0 Metatranscriptome 3300018695 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_092 - TARA_N000001305 (ERX1789500-ERR1719457) Canada's Michael Smith Genome Sciences Centre 3300018695 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -33.688 -71.9903 149650638 257234 0 2 2 17 0.0 Metatranscriptome 3300019204 *Microbiome Permanent Draft Roseovarius nubinhibens ISM and Alexandrium tamarense modeled microbial communities from the University of Georgia, USA Metatranscriptome of Roseovarius nubinhibens ISM and Alexandrium tamarense co-culture from University of Georgia, USA - T8_LowP_B metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019204 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes mmoran@uga.edu Mary Ann Moran No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Laboratory simulated co-culture 33.933 -83.366 47789310 203099 0 2 223 21 SRX3161826 Unrestricted 0.0 Metatranscriptome 3300024542 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepA_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024542 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 167400512 358562 89 207 2129 1572 SRX4547788 Unrestricted 30.78 Metatranscriptome 3300008040 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Puerto Morelos, Mexico - Orbicella 8 T A metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300008040 Metatranscriptome Analysis megahit v. 0.2.0 No Yes momedinamunoz@gmail.com Monica _ Medina, Medina Medina No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral host 20.8778 -86.8431 325898073 489903 67 106 266 442 SRX3362303 Unrestricted 0.0 Metatranscriptome 3300046261 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_2_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046261 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 40217108 74970 3 7 91 44 Restricted 251.15 Metatranscriptome 3300032514 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_12SEP2016_LR2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032514 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Unclassified Phyllosphere Unclassified phyllosphere 42.39 -85.37 610438567 1104818 166 117 197 601 SRX7077716 Unrestricted 52.83 Metatranscriptome 3300032593 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300032593 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Unclassified Phyllosphere Unclassified phyllosphere 42.39 -85.37 543995201 991785 184 157 250 878 SRX7077710, SRX7077709 Unrestricted 0.0 Metatranscriptome 3300017162 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/4 medium with seawater, at 20 C, 34 psu salinity and 591 ?mol photons light - unclassified eukaryote D1 (MMETSP0087) National Center for Genome Resources 3300017162 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 41784993 48269 35 4 59 10 0.0 Metatranscriptome 3300008293 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - PM61.FECAL.14dpc CCME-COLORADO 3300008293 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 4263055 17056 36 4 545 15 0.0 Metatranscriptome 3300010914 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS6_55_TP1_12L Marine Biological Laboratory 3300010914 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 1984392 4540 60 5 463 4 0.0 Metatranscriptome 3300021269 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States - S.499 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021269 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.187 -123.589 41798353 92968 513 2282 13465 14676 SRX4017790 Unrestricted 0.0 Metatranscriptome 3300013046 *Microbiome Permanent Draft Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013046 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes christopher.s.miller@ucdenver.edu Christopher S. Miller No Environmental Aquatic Wetlands Freshwater Unclassified Freshwater wetlands 41.384 -82.513 22198236 49109 88 130 17347 1005 SRX3195860 Unrestricted 0.0 Metatranscriptome 3300032439 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day14_7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032439 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 33032440 53091 8 0 27 0 SRX7582884 Unrestricted 239.48 Metatranscriptome 3300028760 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Asp1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028760 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 77050013 136307 8 1 145 3 SRX5356200 Unrestricted 49.54 Metatranscriptome 3300012784 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES001 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012784 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 36164620 77985 201 121 5580 2106 SRX3379871 Unrestricted 0.0 Metatranscriptome 3300003301 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI073_10m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003301 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 45135099 106326 112 61 258 958 Unrestricted 0.0 Metatranscriptome 3300012392 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012392 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 155772952 369935 100 741 6206 6319 Unrestricted 0.0 Metatranscriptome 3300017601 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in ESM medium with SW802, 23 C, 35 psu salinity and 437 ?mol photons light - Bicosoecida sp. CB-2014 ms1 (MMETSP0115) (SRX548997-SRR1294383) National Center for Genome Resources 3300017601 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Beach/Shore marine 46.5105 -63.4856 8690335 12369 15 1 29 1 0.0 Metatranscriptome 3300017159 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no nitrate, 14 C, 36 psu salinity and 152 ?mol photons light - Ditylum brightwellii GSO104 (MMETSP1013) National Center for Genome Resources 3300017159 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 41.325 -70.57 27284763 34026 4 3 8 4 0.0 Metatranscriptome 3300009390 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from the North Atlantic ocean - ACM34 University of Georgia 3300009390 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 104810559 328211 60 109 263 511 0.0 Metatranscriptome 3300060327 *Microbiome Permanent Draft Sediment microbial communities from the PNNL SFA Hanford 300 Area, Columbia River, WA, USA Metatranscriptome of sediment microbial communities from in situ POM Reactor at the PNNL SFA Hanford 300 Area, Columbia River, WA, USA - Deep Unashed with POM (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300060327 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes eroden@geology.wisc.edu Eric Roden No Environmental Aquatic River Freshwater Sediment Sediment 46.467778 -119.464444 44912376 110731 79 55 222 291 Restricted 164.48 Metatranscriptome 3300008597 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-46 University of Hawaii 3300008597 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 210007 396 0 0 43 5 0.0 Metatranscriptome 3300048992 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048992 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.806 -82.3838 13183191 30432 60 45 166 231 Restricted 53.96 Metatranscriptome 3300008936 *Microbiome Permanent Draft Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica - 3B J. Craig Venter Institute (JCVI) 3300008936 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ice edge, McMurdo Sound, Antarctica -77.36 164.28 153385865 436814 24 4 63 85 0.0 Metatranscriptome 3300010180 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1300(2)_B MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010180 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 67941494 149766 2248 6 8002 32 SRX2739938, SRX2739939 Unrestricted 0.0 Metatranscriptome 3300034679 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB21_1000m_1099 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034679 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 74.0136 -139.5971 198422526 427919 101 69 1300 900 SRX7542511 Unrestricted 0.0 Metatranscriptome 3300030684 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Anb6 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030684 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 283984682 680560 120 65 296 385 SRX5244967 Unrestricted 0.0 Metatranscriptome 3300051599 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 48_100_8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051599 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 139629737 366859 297 305 2506 1739 Unrestricted 54.21 Metatranscriptome 3300021283 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States - S.587 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021283 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.178 -123.853 49158149 107058 143 1093 1730 7273 SRX4017787 Unrestricted 0.0 Metatranscriptome 3300005636 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling - Hofmockel_1000196-3 ISU MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005636 Metatranscriptome Analysis megahit v. 0.2.0 No Yes khof@iastate.edu, kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Agricultural land Soil Unclassified Enriched soil aggregate 42.0266187 -93.6486594 61386028 147503 202 154 850 269 SRX3195501 Unrestricted 0.0 Metatranscriptome 3300031046 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T35 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031046 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 30014356 55941 36 22 82 150 SRX5794831 Unrestricted 15.84 Metatranscriptome 3300004336 *Microbiome Permanent Draft Metatranscriptomics studies in sediment microbial communities from the mangroves in Sao Paulo, Brazil Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC4C 3300004336 Metatranscriptome Analysis IDBA released by JGI data releasing policy No Yes luc.g.cabral@gmail.com Luc?lia Cabral, Lucelia Cabral No Environmental Aquatic Intertidal zone Marine Mangrove sediment Mangrove sediment -23.8553 -46.1394 37414647 112556 1269 621 4938 1838 0.0 Metatranscriptome 3300026406 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 13R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026406 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 86779247 166473 100 18 163 301 SRX4783591 Unrestricted 30.75 Metatranscriptome 3300016748 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011502CT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016748 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 277151409 614213 137 598 1683 6251 SRX3780729 Unrestricted 0.0 Metatranscriptome 3300003533 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_Marker33_RNA 3300003533 Metatranscriptome Analysis CLC genomics workbench 7.0 released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 7392897 24385 234 39 1374 81 0.0 Metatranscriptome 3300041573 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_480 MetaT AgResearch, New Zealand, Mosgeil 3300041573 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 15381300 34504 263 37 1562 116 0.0 Metatranscriptome 3300046423 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_70N_Fire (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046423 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1306 -81.3565 40856156 95760 65 130 1080 708 Unrestricted 55.73 Metatranscriptome 3300031444 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_D6_4mM_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031444 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 27796903 40395 3 0 1 2 SRX6408124 Unrestricted 74.78 Metatranscriptome 3300036504 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Omics_26_27_28_031718 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036504 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 177314421 395914 880 81 1796 1830 SRX8835092 Unrestricted 28.31 Metatranscriptome 3300009028 *Microbiome Permanent Draft Eukaryotic communities from seawater of the North Pacific Subtropical Gyre Eukaryotic communities from seawater of the North Pacific Subtropical Gyre - HoeDylan_S3 Woods Hole Oceanographic Institution 3300009028 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ocean water 22.75 -158.0 2363188173 9527595 141 215 838 2279 0.0 Metatranscriptome 3300059678 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_18 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059678 Metatranscriptome Analysis megahit v. 2021-11-19 00:47:40 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 394216742 895138 316 96 1023 392 Unrestricted 0.0 Metatranscriptome 3300009737 *Microbiome Permanent Draft Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling - T5-LHNH4 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009737 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes milachis@u.washington.edu Ludmila Chistoserdova No Engineered Modeled Plant nodule Simulated communities (microbial mixture) Unclassified Methane-oxidizing 47.6193 -122.2449 55314716 135741 2 0 308 6 SRX2525513 Unrestricted 0.0 Metatranscriptome 3300013059 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013059 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil corn rhizosphere 42.3948 -85.3738 33444858 81876 183 717 13977 5657 SRX4062910, SRX4062909 Unrestricted 0.0 Metatranscriptome 3300024566 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepA_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024566 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 293194568 569583 60 176 588 1207 SRX4547622 Unrestricted 21.37 Metatranscriptome 3300012869 *Microbiome Permanent Draft Synthetic bacterial communities of pure cultures isolated from sediment of Lake Washington, USA Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under low oxygen conditions - MT methane_oxidizing 4strains_48hour-a (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012869 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes milachis@u.washington.edu Ludmila Chistoserdova No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 47.6553 -122.3035 13489826 34891 0 0 271 2 SRX3564461 Unrestricted 0.0 Metatranscriptome 3300019231 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA - AD_UKC057_MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019231 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 41.53 -90.43 216296469 446075 65 112 9931 569 SRX3903243 Unrestricted 0.0 Metatranscriptome 3300017146 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in Aquil nutrients amended seawater with alpha-glycerophosphate, at 20 C, 35 psu salinity and 752 ?mol photons light - Emiliania huxleyi CCMP 370 (MMETSP1157) National Center for Genome Resources 3300017146 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 37510362 47018 1 3 1 3 0.0 Metatranscriptome 3300026415 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepA_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026415 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 99856382 215319 78 69 309 508 SRX4796911 Unrestricted 29.58 Metatranscriptome 3300058333 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - FS2.Jun19.R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300058333 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.5325 -110.7972 8-9 76152630 188663 26 1 351 11 Unrestricted 229.99 Metatranscriptome 3300018777 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_052 - TARA_N000000589 (ERX1789605-ERR1719349) Canada's Michael Smith Genome Sciences Centre 3300018777 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -16.9672 53.9337 156633261 384472 1 48 7 354 0.0 Metatranscriptome 3300055148 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP1.3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055148 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 152172853 313804 37 60 336 355 Unrestricted 103.61 Metatranscriptome 3300009850 *Microbiome Permanent Draft Sorghum rhizosphere soil microbial communities from California, USA Sorghum rhizosphere soil microbial communities in Albany, CA (condition:control)- sample C QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300009850 Metatranscriptome Analysis Trinity released per PI Yes Yes xuling@berkeley.edu Ling Xu No Host-associated Plants Rhizosphere Roots Soil soil 37.887207 -122.304401 52783870 131193 5090 9585 12945 26995 0.0 Metatranscriptome 3300010012 *Microbiome Permanent Draft Black Band Disease transitions Microbial communities of stony corals with Black-band disease (BBD) from Carrie Bow Cay Field Station, Belize; BBD Transitions coral #1 sample B1 University of Maryland 3300010012 Metatranscriptome Analysis IDBA-Tran v1.1.1 released per JGI data release policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified marine 16.80288 -88.08213 48742759 113008 60 8 198 36 0.0 Metatranscriptome 3300004531 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 124_LOW14 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004531 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 25864573 59233 116 20 657 21 SRX2780254 Unrestricted 0.0 Metatranscriptome 3300013062 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013062 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil corn rhizosphere 42.3948 -85.3738 38566832 99915 182 586 15496 5117 SRX4925173, SRX4925172 Unrestricted 0.0 Metatranscriptome 3300008538 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.1ln.2.15dpc CCME-COLORADO 3300008538 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 4263530 18090 98 4 836 6 0.0 Metatranscriptome 3300016687 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES104 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016687 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.041 -89.686 86445777 166485 52 252 2354 4674 SRX3780030 Unrestricted 0.0 Metatranscriptome 3300041690 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_387 MetaT AgResearch, New Zealand, Mosgeil 3300041690 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 7355899 16388 402 248 1602 285 0.0 Metatranscriptome 3300003298 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 42 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003298 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 25096175 68825 96 201 1416 1003 Unrestricted 0.0 Metatranscriptome 3300027025 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0439-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300027025 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 140636906 268760 6 9 7 66 SRX5251582 Unrestricted 181.98 Metatranscriptome 3300048094 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P11SSC1_190916_i (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048094 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 127898993 301941 158 344 2524 1851 SRX20649825 Unrestricted 88.31 Metatranscriptome 3300026433 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0928-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026433 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 159074174 271970 10 12 13 24 SRX4796388 Unrestricted 95.37 Metatranscriptome 3300031062 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_S21_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031062 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 6.5 -48.0 976733895 3462547 1707 1068 2611 3599 SRX3342408 Unrestricted 0.0 Metatranscriptome 3300003506 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS857_Anemone_RNA 3300003506 Metatranscriptome Analysis CLC genomics workbench released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933 -130.01379 3112207 10139 47 18 150 13 0.0 Metatranscriptome 3300018955 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_123 - TARA_N000001972 (ERX1789369-ERR1719393) Canada's Michael Smith Genome Sciences Centre 3300018955 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.9068 -140.283 451191640 1074022 7 23 46 234 0.0 Metatranscriptome 3300046650 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_1_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046650 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 35796835 53125 2 0 12 1 Restricted 191.28 Metatranscriptome 3300046551 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_1_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046551 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 53584103 84780 2 0 20 2 Restricted 181.88 Metatranscriptome 3300052324 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_3A1_100218_0210 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052324 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@dbi.udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 123173405 296876 440 119 1073 588 Unrestricted 160.33 Metatranscriptome 3300008903 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of annulated tree boas from Steinhart Aquarium in San Francisco, USA - CAS05_Kidney University of California, San Francisco 3300008903 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Kidney Urinary system Unclassified Kidney 2914988 8549 0 0 0 0 SRX170626 0.0 Metatranscriptome 3300031059 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T17 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031059 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 63972749 118022 81 82 92 336 SRX5794442 Unrestricted 20.26 Metatranscriptome 3300018601 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS679_3p0_dT J. Craig Venter Institute (JCVI) 3300018601 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 56.1664 16.378218 57702795 146976 296 313 457 427 0.0 Metatranscriptome 3300018500 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_051 - TARA_N000000216 (ERX1782154-ERR1712171) Canada's Michael Smith Genome Sciences Centre 3300018500 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -21.4689 54.3066 6423211 19241 29 18 132 354 0.0 Metatranscriptome 3300046618 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-45 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046618 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4354 -64.1145 88008845 209792 288 16 516 244 Unrestricted 15.89 Metatranscriptome 3300036375 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen6, Rep 1, Chloramphenicol (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036375 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 16255810 18592 0 0 0 1 SRX8381193, SRX8381194 Unrestricted 0.0 Metatranscriptome 3300017187 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Caribbean Sea in L1 medium with silica, 20 C, 21 psu salinity and 307 ?mol photons light - Thalassionema frauenfeldii CCMP 1798 (MMETSP0786) National Center for Genome Resources 3300017187 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 18.47 -64.575 32770743 35016 13 2 21 2 0.0 Metatranscriptome 3300008830 *Microbiome Permanent Draft Microbial communities of mouse gut induced with colitis from Vienna, Austria Microbial communities of mouse gut induced with colitis from Vienna, Austria - 9965_ACTGT University of Vienna 3300008830 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Stomach Digestive system Forestomach Foregut of mice 48016415 170258 310 4 2013 20 SRX326432 0.0 Metatranscriptome 3300006585 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Gly_03_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006585 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 91900172 240527 295 267 1100 685 SRX3362012 Unrestricted 0.0 Metatranscriptome 3300036531 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp03_R70 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036531 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 193553967 399564 212 61 524 925 SRX8840523 Unrestricted 46.2 Metatranscriptome 3300009558 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 12m depth; RNA IDBA-UD Marine Biological Laboratory 3300009558 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 6.9 39142879 102505 1436 46 5684 204 0.0 Metatranscriptome 3300042487 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_251 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042487 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 106993689 248487 306 471 2263 2457 Unrestricted 45.74 Metatranscriptome 3300037879 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen2, Rep 1, Chloramphenicol (Eukaryote Community Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037879 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 39794029 34631 5 1 10 5 SRX8381195, SRX8381196 Unrestricted 0.0 Metatranscriptome 3300029978 *Microbiome Permanent Draft North Pond metatranscriptomes Metatranscriptome of crustal fluid microbial communities from North Pond, Mid-Atlantic Ridge, Atlantic Ocean - 1383CS 2017 Marine Biological Laboratory 3300029978 Metatranscriptome Analysis IDBA-UD v. 1.1.2 released by JGI data releasing policy No Yes lmseyler@gmail.com Lauren Seyler No Environmental Aquatic Oceanic Marine Crustal Fluids Oceanic crustal fluids 22.75 -46.083 1767569 2822 992 40 1436 80 0.0 Metatranscriptome 3300011327 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S19 NADW_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011327 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 129884830 297957 33 28 2454 961 SRX3787348 Unrestricted 0.0 Metatranscriptome 3300002872 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Avena fatua rhizosphere microbial communities - H1_Bulk_Litter_5 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002872 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes mkfstone@berkeley.edu, nuccio1@llnl.gov; mkfstone@berkeley.edu Mary Firestone, Erin Nuccio; Mary Firestone No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.97364 -123.117453 8759371 25059 113 67 193 765 SRX2557996 Unrestricted 0.0 Metatranscriptome 3300046200 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_6_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046200 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 35957130 66172 1 1 11 0 Restricted 197.34 Metatranscriptome 3300030912 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_S15_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030912 Metatranscriptome Analysis MEGAHIT v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -2.7 -28.5 322649997 1171696 763 712 1417 2235 SRX3342282 Unrestricted 0.0 Metatranscriptome 3300048683 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Metatranscriptome of soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048683 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.3476 -119.2808 47260076 68704 13 0 24 5 Unrestricted 54.45 Metatranscriptome 3300018808 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_064 - TARA_N000000925 (ERX1782319-ERR1711931) Canada's Michael Smith Genome Sciences Centre 3300018808 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -29.5015 37.9946 193857761 435747 6 40 33 247 0.0 Metatranscriptome 3300008864 *Microbiome Permanent Draft Microbial communities from harbor seals stranded along the coast of California, USA Microbial communities from harbor seals stranded along the coast of California, USA - com5 Oregon State University 3300008864 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Brain Nervous system Unclassified Harbor seal brain 37.8592 -122.4853 430508367 793500 0 7 146 16 ERX1190725 0.0 Metatranscriptome 3300037543 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Metatranscriptome of lab enriched marine microbial communities from Marineland, Florida, USA - SWA_R2_TP1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037543 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6475 -82.3464 170685453 346335 151 46 335 224 SRX9144415 Unrestricted 49.8 Metatranscriptome 3300048669 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-165 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048669 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4757 -64.2279 13495235 30753 181 36 385 1033 Unrestricted 26.6 Metatranscriptome 3300019139 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_081 - TARA_N000001430 (ERX1809743-ERR1740120) Canada's Michael Smith Genome Sciences Centre 3300019139 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -44.5838 -52.1952 262801933 660361 4 2 22 84 0.0 Metatranscriptome 3300012418 *Microbiome Permanent Draft Polar marine prokaryotic and eukaryotic communities from Antarctica during spring seasonal transition Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 72hr light incubation - RNA12.A_72.20151113 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012418 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bowmanjs@ldeo.columbia.edu Jeff Bowman Yes Environmental Aquatic Unclassified Marine Unclassified Polar marine -64.775 -64.053 565265521 1174732 842 357 6437 11068 SRX3379700 Unrestricted 0.0 Metatranscriptome 3300052451 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 120-S78Day7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052451 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 147797150 282075 56 2 124 25 Unrestricted 98.47 Metatranscriptome 3300016999 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium, 13 C, 21 psu salinity and 238 ?mol photons light - Minutocellus polymorphus NH13 (MMETSP1070) National Center for Genome Resources 3300016999 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 36253631 34503 18 15 28 29 0.0 Metatranscriptome 3300000750 *Microbiome Permanent Draft Soil microbial communities from four geographically distinct crusts in the Colorado Plateau and Sonoran desert Soil microbial communities from Moab, Utah, sample - Soil Crust Dry out, 3 days (biological replicate A) D5A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300000750 Metatranscriptome Analysis No Yes elbrodie@lbl.gov, ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Desert Soil Unclassified Soil 38.714694 -109.692944 228652846 769851 107 441 553 1403 SRX3311667 Unrestricted 0.0 Metatranscriptome 3300036664 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - WOF_Exp1_80M_TF_031419 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036664 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 275674534 567494 580 59 1481 641 SRX8842320 Unrestricted 47.14 Metatranscriptome 3300030824 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLU2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030824 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 59.9982 10.7894 14885290 28975 105 235 390 1042 SRX5351302 Unrestricted 0.0 Metatranscriptome 3300004099 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF236 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004099 Metatranscriptome Analysis megahit v. 0.2.0 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.531427 -72.189946 129980747 442722 53 31 149 235 SRX2014019 Unrestricted 0.0 Metatranscriptome 3300028555 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 corn stover (Eukaryote Community Metatranscriptome) (version 9) DOE Joint Genome Institute (JGI) 3300028555 Metatranscriptome Analysis MEGAHIT v. 1.0.4b No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 40.102108 -88.227299 427995326 842858 84 435 310 716 SRX5780594 Unrestricted 0.0 Metatranscriptome 3300017342 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine host-associated eukaryotic communities from unknown location in f/2 medium with natural seawater, 50% L1 mix, no silicate, at 26 C, 35 psu salinity and 387 ?mol photons light - Symbiodinium sp. cladeA (MMETSP1374) National Center for Genome Resources 3300017342 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Microbial Unclassified Dinoflagellates Unclassified Marine host-associated 47390271 65821 28 17 33 15 SRX554237 0.0 Metatranscriptome 3300061822 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 34_sorghum_2_T0 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061822 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 56291559 151852 153 162 995 1186 Unrestricted 99.06 Metatranscriptome 3300008317 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.3.4LN.15dpc CCME-COLORADO 3300008317 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 2072490 9150 56 2 774 11 0.0 Metatranscriptome 3300029277 *Microbiome Permanent Draft Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Sorghum rhizosphere microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B3.ctcc.R1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300029277 Metatranscriptome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes colemanderr@gmail.com Devin Coleman-Derr No Host-associated Plants Rhizosphere Roots Unclassified sorghum rhizosphere 36.339058 -120.12031 54507166 111601 86 1358 523 4005 0.0 Metatranscriptome 3300031961 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Metatranscriptome of bovine rumen microbial communities from UC Davis, California, United States - 3_2548_0518 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031961 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen 38.5357 -121.7593 448072368 898054 2 17 89 104 SRX5812532 Unrestricted 15.07 Metatranscriptome 3300031734 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from Antarctic Ocean - PS103-7 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031734 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified marine -63.9989 0.064 874813221 1605474 28 8 22 121 SRX5356516 Unrestricted 13.13 Metatranscriptome 3300005249 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1200_T MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005249 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 75552969 190588 45 0 245 5 SRX2521573, SRX2521572 Unrestricted 0.0 Metatranscriptome 3300046230 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_5_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046230 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 55759323 97444 1 0 17 0 Restricted 198.33 Metatranscriptome 3300008766 *Microbiome Permanent Draft Microbial communities of mouse gut induced with colitis from Vienna, Austria Microbial communities of mouse gut induced with colitis from Vienna, Austria - 9968_ACGTT University of Vienna 3300008766 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Stomach Digestive system Forestomach Foregut of mice 26326335 90397 180 1 1425 31 SRX326435 0.0 Metatranscriptome 3300057132 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Western Region, Iceland - Sphagnum magellanicum H1_MAG_ICE (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300057132 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 168929775 351442 89 68 316 213 Unrestricted 37.9 Metatranscriptome 3300036315 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Metatranscriptome of Bradyrhizobium sp. W and Methylocaldum sp. 0917 mixed culture communities from SDSU, California, USA - Exp#7 BR3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036315 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified artificial sand 32.7717 -117.0735 25847585 41341 1 0 4 0 SRX8295734 Unrestricted 173.97 Metatranscriptome 3300030681 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 26_T1E_3212KB8 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030681 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 68864959 98199 0 7 6 366 SRX4646389 Unrestricted 0.0 Metatranscriptome 3300052388 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_17B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052388 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Bulk soil Soil 38.992973 -123.067448 205879224 548184 207 201 1485 1119 Unrestricted 55.11 Metatranscriptome 3300020080 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300020080 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil corn rhizosphere 42.3948 -85.3738 874948499 1922239 432 2704 10440 26092 SRX4062856, SRX4062855 Unrestricted 0.0 Metatranscriptome 3300036501 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10WP15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036501 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 220643599 471530 639 2078 2738 6697 SRX8379342 Unrestricted 39.05 Metatranscriptome 3300046186 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_6_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046186 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 33032572 54999 1 1 12 1 Restricted 194.83 Metatranscriptome 3300002583 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS903_80_12L 3300002583 Metatranscriptome Analysis released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 954871 2850 126 0 224 2 0.0 Metatranscriptome 3300008800 *Microbiome Permanent Draft Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample NO3-2 University of Duisburg-Essen 3300008800 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Pond Freshwater Unclassified Eutrophic pond 51.46 7.0 86810048 300268 42 58 898 349 SRX505496 0.0 Metatranscriptome 3300038283 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_M1_C1_D3_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038283 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 91980004 203321 382 320 3958 1017 SRX9390815 Unrestricted 231.53 Metatranscriptome 3300030726 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - AG5_1292_32.3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030726 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 70.5467 -122.9077 103389505 211878 232 51 541 1210 SRX5651144 Unrestricted 26.05 Metatranscriptome 3300018929 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_072 - TARA_N000000843 (ERX1782134-ERR1712223) Canada's Michael Smith Genome Sciences Centre 3300018929 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.7726 -17.915 453291286 837025 34 49 147 613 0.0 Metatranscriptome 3300018717 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_084 - TARA_N000001362 (ERX1789634-ERR1719196) Canada's Michael Smith Genome Sciences Centre 3300018717 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -60.2584 -60.6226 186583378 304454 0 5 2 53 0.0 Metatranscriptome 3300010072 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_2_16_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010072 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 27732287 66315 207 529 29437 4723 Unrestricted 0.0 Metatranscriptome 3300046147 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-22 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046147 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4257 -64.7745 91487092 216836 894 46 1500 791 Unrestricted 21.99 Metatranscriptome 3300032749 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Plim5_26May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032749 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 648210808 1108992 15 9 34 145 SRX5801643 Unrestricted 0.0 Metatranscriptome 3300046264 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_3_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046264 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 27716512 49273 1 0 21 0 Restricted 296.64 Metatranscriptome 3300049546 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J12_B_4_control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049546 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 48638537 119765 44 66 237 400 Unrestricted 211.72 Metatranscriptome 3300006400 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006400 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 311239086 848961 5481 9971 14240 26871 SRX3196379 Unrestricted 0.0 Metatranscriptome 3300017604 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in ASW medium, resuspended in ASW w/o silicate, 20 C, 29 psu salinity and 692 ?mol photons light - Chaetoceros curvisetus (MMETSP0717) (SRX549069-SRR1294455) National Center for Genome Resources 3300017604 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 32.9 -117.255 7801019 14084 4 1 3 1 0.0 Metatranscriptome 3300052780 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 3_100_16 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052780 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 84267711 214512 257 268 1659 1787 Unrestricted 51.31 Metatranscriptome 3300031025 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_12SEP2016_LR1 (Metagenome Metatranscriptome) (pilot) DOE Joint Genome Institute (JGI) 3300031025 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Unclassified Phyllosphere Unclassified phyllosphere 42.39 -85.37 5420767 10625 1 1 1 12 SRX7077723, SRX7077724 Unrestricted 0.0 Metatranscriptome 3300017363 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/4 medium with seawater, at 20 C, 34 psu salinity and 246 ?mol photons light - Goniomonas pacifica CCMP 1869 (MMETSP0108) National Center for Genome Resources 3300017363 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 48718849 76643 43 4 64 17 0.0 Metatranscriptome 3300010911 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS917_55_13C_TP1_INC4_7 Marine Biological Laboratory 3300010911 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 1817767 3728 111 5 216 8 0.0 Metatranscriptome 3300003304 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_150m_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003304 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 68612363 156471 130 69 593 826 Unrestricted 0.0 Metatranscriptome 3300012781 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Simoncouche, Canada - S_130712_E_mt (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012781 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.2311 -71.2508 280146770 609536 662 250 5944 5334 SRX3015287 Unrestricted 0.0 Metatranscriptome 3300018838 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_102 - TARA_N000001646 (ERX1789439-ERR1719515) Canada's Michael Smith Genome Sciences Centre 3300018838 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -5.2529 -85.1545 190635864 471005 6 11 12 103 0.0 Metatranscriptome 3300059650 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 69R_SD_T2_R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059650 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 55986223 141706 153 177 705 1045 Unrestricted 47.92 Metatranscriptome 3300018564 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_142 - TARA_N000003083 (ERX1789499-ERR1719165) Canada's Michael Smith Genome Sciences Centre 3300018564 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 25.5264 -88.394 12259094 53538 4 1 5 10 0.0 Metatranscriptome 3300004977 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 67 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004977 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 129408643 419868 5914 3821 23070 9110 Unrestricted 0.0 Metatranscriptome 3300021879 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-5 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021879 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 23.6882 -20.173 41606627 91872 88 44 263 191 SRX5295542 Unrestricted 0.0 Metatranscriptome 3300011061 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 12 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011061 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 58171372 137069 166 553 10933 1950 Unrestricted 0.0 Metatranscriptome 3300038161 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_OW2_C1_D1_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038161 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 57228699 109185 515 1887 7953 5827 SRX9390224 Unrestricted 101.63 Metatranscriptome 3300034057 *Microbiome Permanent Draft FORHOT Natural soil warming experiment in Iceland Soil microbial communities from grassland in Hveragerdi, Iceland - GN2-E University of Vienna 3300034057 Metatranscriptome Analysis rnaSPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes craig.herbold@microbial-ecology.net Craig Herbold No Environmental Terrestrial Unclassified Soil Grasslands Soil 64.025 -21.205 1339889352 5037728 248633 9845 365775 20278 0.0 Metatranscriptome 3300004501 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 64 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004501 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 40321085 137207 1729 1077 6768 2187 Unrestricted 0.0 Metatranscriptome 3300004600 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 56 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004600 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 85008653 290913 4174 1807 16050 4387 Unrestricted 0.0 Metatranscriptome 3300008377 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34699 J. Craig Venter Institute (JCVI) 3300008377 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 12931 24 0 0 1 0 0.0 Metatranscriptome 3300049799 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Metatranscriptome of woodchip biofilm microbial communities from lab scale WBRs in New York, USA - hf_drw_p2_t0_h0_prok (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049799 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 58539458 137511 106 96 1060 545 Unrestricted 70.76 Metatranscriptome 3300008296 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - PM95.FECAL.14dpc CCME-COLORADO 3300008296 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 2431254 10203 36 1 993 5 0.0 Metatranscriptome 3300041867 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_400 MetaT AgResearch, New Zealand, Mosgeil 3300041867 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 8455811 17234 135 59 993 172 0.0 Metatranscriptome 3300035599 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R1105M02 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300035599 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0386 24877913 51187 370 1048 3134 3931 SRX9140009, SRX9140008 Unrestricted 0.0 Metatranscriptome 3300032596 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-3 rumen fluid (Eukaryote Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032596 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 40.102108 -88.227299 124114160 215868 11 63 49 100 SRX5780733 Unrestricted 0.0 Metatranscriptome 3300022726 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022726 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 697238595 1622092 196 526 4773 3906 SRX4403121 Unrestricted 0.0 Metatranscriptome 3300017254 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no Na2SiO3, 25 C, 34 psu salinity and 233 ?mol photons light - Symbiodinium sp. Mp (MMETSP1122) National Center for Genome Resources 3300017254 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 52735323 66807 0 3 0 7 0.0 Metatranscriptome 3300019201 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - R6.10AS metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019201 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.183 -123.19 92269183 195609 114 307 803 3660 Unrestricted 0.0 Metatranscriptome 3300013043 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013043 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil corn rhizosphere 42.3948 -85.3738 8638212 20872 65 255 7939 2107 SRX4062856, SRX4062855 Unrestricted 0.0 Metatranscriptome 3300030888 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030888 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 59.997 10.7902 44857652 103000 45 119 272 660 SRX5351821 Unrestricted 0.0 Metatranscriptome 3300047414 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81956dd0-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047414 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 322663715 796265 320 217 1798 1368 Unrestricted 48.98 Metatranscriptome 3300017048 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in f/2 medium with Bay of Fundy seawater, no silicate, 21 C, 35 psu salinity and 292 ?mol photons light - Dolichomastix tenuilepis CCMP 3274 (MMETSP0033_2) National Center for Genome Resources 3300017048 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 40.5 14.25 25662495 29720 66 9 100 12 0.0 Metatranscriptome 3300008915 *Microbiome Permanent Draft Microbial communities of nutrient treated water from Blanes Bay, Barcelona, Spain Microbial communities of nutrient treated water from Blanes Bay, Barcelona, Spain - KA1 Sodertorn University 3300008915 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Bay water 41.666 2.8 21236861 80948 440 333 2787 2399 ERX1055471 0.0 Metatranscriptome 3300024557 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepA_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024557 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 219945040 451722 80 306 791 1954 SRX4547766 Unrestricted 19.24 Metatranscriptome 3300023561 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023561 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 49.044 13.617 33692363 47506 16 24 367 218 SRX4454778 Unrestricted 30.88 Metatranscriptome 3300023660 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023660 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 49.0427 13.6161 9994431 22196 20 28 516 227 SRX4455288 Unrestricted 74.22 Metatranscriptome 3300016885 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Arctic Ocean in K/2 medium, 4 C, 35 psu salinity and 113 ?mol photons light - Micromonas pusilla RCC 2306 (MMETSP1327) National Center for Genome Resources 3300016885 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 70.55 -140.8 19118737 17536 4 1 2 1 0.0 Metatranscriptome 3300020610 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300020610 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil corn rhizosphere 42.3948 -85.3738 340664958 818800 609 2716 21435 28243 SRX4926815, SRX4926816 Unrestricted 0.0 Metatranscriptome 3300008933 *Microbiome Permanent Draft Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica - 2B J. Craig Venter Institute (JCVI) 3300008933 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ice edge, McMurdo Sound, Antarctica -77.36 164.28 145274484 426599 28 8 55 93 0.0 Metatranscriptome 3300030972 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB4 SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030972 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7585 6.3578 674860442 1986262 5168 2100 12330 6299 SRX3351899 Unrestricted 0.0 Metatranscriptome 3300018530 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_147 - TARA_N000002103 (ERX1789596-ERR1719514) Canada's Michael Smith Genome Sciences Centre 3300018530 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 33.061 -66.5435 9673272 25371 7 2 10 72 0.0 Metatranscriptome 3300018631 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_068 - TARA_N000000709 (ERX1789487-ERR1719508) Canada's Michael Smith Genome Sciences Centre 3300018631 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -31.0507 4.6603 94372708 190040 0 21 0 68 0.0 Metatranscriptome 3300049161 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_A_0_drought (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049161 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 211478604 494118 344 195 1563 1171 Unrestricted 49.29 Metatranscriptome 3300005633 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling - Hofmockel_1000132-3 ISU MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005633 Metatranscriptome Analysis megahit v. 0.2.0 No Yes khof@iastate.edu, kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Agricultural land Soil Unclassified Enriched soil aggregate 42.0266187 -93.6486594 41292306 100931 156 98 657 171 SRX3195502 Unrestricted 0.0 Metatranscriptome 3300031043 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031043 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 59.997 10.7902 28427589 61138 144 208 663 1119 SRX5351846 Unrestricted 0.0 Metatranscriptome 3300004333 *Microbiome Permanent Draft Metatranscriptomics studies in sediment microbial communities from the mangroves in Sao Paulo, Brazil Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC3C 3300004333 Metatranscriptome Analysis IDBA released by JGI data releasing policy No Yes luc.g.cabral@gmail.com Luc?lia Cabral, Lucelia Cabral No Environmental Aquatic Intertidal zone Marine Mangrove sediment Mangrove sediment -23.8553 -46.1394 28105712 85403 2787 1749 14805 5834 0.0 Metatranscriptome 3300021286 *Microbiome Permanent Draft Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16RNAfungal (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021286 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Vadose zone Soil Unclassified Vadose zone soil 39.7291 -123.6419 52531676 119541 1355 593 19457 6654 SRX3903138 Unrestricted 0.0 Metatranscriptome 3300008402 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34716 J. Craig Venter Institute (JCVI) 3300008402 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 18247 35 0 0 0 0 0.0 Metatranscriptome 3300041576 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_475 MetaT AgResearch, New Zealand, Mosgeil 3300041576 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 112001536 239232 120 34 1230 103 0.0 Metatranscriptome 3300023695 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 21R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023695 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 73899570 159281 82 41 420 758 SRX4474475 Unrestricted 27.55 Metatranscriptome 3300026403 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 2R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026403 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 71350416 155485 375 58 490 933 SRX4474442 Unrestricted 17.59 Metatranscriptome 3300009570 *Microbiome Permanent Draft Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea North East Pacific Ocean microbial community - Bloomer_DOMexp_control_27hr_metatranscriptome Massachusetts Institute of Technology 3300009570 Metatranscriptome Analysis Greengenes NAST aligner, Ribosomal Database Project (RDP) naive Bayesian classifier released per JGI data release policy No Yes sarabc@mit.edu Sara Collins No Environmental Aquatic Epipelagic Marine Unclassified open ocean 23.214666 -159.136166 125762964 499232 45408 763 431447 4523 0.0 Metatranscriptome 3300041754 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_475 MetaT AgResearch, New Zealand, Mosgeil 3300041754 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 3286726 6638 69 33 551 70 0.0 Metatranscriptome 3300046426 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_19E_Fire (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046426 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.178 -81.365 409597320 940030 70 91 1397 487 Unrestricted 54.72 Metatranscriptome 3300055062 *Microbiome Permanent Draft Acid mine drainage microbial communities from coal mines in Pennsylvania and Ohio, United States Metatranscriptome of lab enriched acid mine drainage microbial communities from Akron, Ohio, USA - PML1_14D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055062 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes shagun2260@gmail.com Shagun sharma No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage acid mine drainage 41.07755 -81.511441 28992971 48870 61 48 254 279 Restricted 159.32 Metatranscriptome 3300024563 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepB_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024563 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 254916100 514691 78 223 689 1534 SRX4547608 Unrestricted 19.71 Metatranscriptome 3300037029 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp01_R9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037029 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 349950743 716181 460 77 819 1183 SRX8835141 Unrestricted 33.51 Metatranscriptome 3300019020 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_153 - TARA_N000002813 (ERX1789673-ERR1719264) Canada's Michael Smith Genome Sciences Centre 3300019020 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 44.074 -16.547 542720286 1149867 58 68 124 814 0.0 Metatranscriptome 3300037799 *Microbiome Permanent Draft Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States Metatranscriptome of soil eukaryotic communities from experimental microcosm in Duke University, North Carolina, United States - s116 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037799 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes colin.averill@usys.ethz.ch Colin Averill No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 36.0 -78.0 94236420 174685 47 125 580 1013 SRX9169899 Unrestricted 28.28 Metatranscriptome 3300052454 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 6-S25Day28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052454 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 212212750 429348 59 7 163 48 Unrestricted 59.77 Metatranscriptome 3300032409 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day7_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032409 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 10741900 20513 11 0 77 1 SRX6857413 Unrestricted 66.06 Metatranscriptome 3300003938 *Microbiome Permanent Draft Microbial community impact on carbon sequestration in managed wetland Carbon farming Wetland microbial communities from Twitchell Island in the Sacramento Delta, California, USA - surface sediment Aug2011 Site C1 Bulk Metatranscriptome (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300003938 Metatranscriptome Analysis No Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Wetland 38.1075 -121.6497 658948136 2002384 418 2386 25280 22718 SRX2553477 Unrestricted 0.0 Metatranscriptome 3300017143 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater and 400nM iron, 19 C, 35 psu salinity and 633 ?mol photons light - Thalassiosira weissflogii CCMP 1010 (MMETSP1405) National Center for Genome Resources 3300017143 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.0 -65.0 30617488 33794 3 10 2 21 0.0 Metatranscriptome 3300035406 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Antarctic Ocean - DFB2_16 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035406 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified Seawater -46.5954 142.0314 295795674 616947 955 69 2007 1772 SRX8226856 Unrestricted 19.64 Metatranscriptome 3300003331 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-2-R (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003331 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 165734446 341044 7 16 157 54 SRX2557343 Unrestricted 0.0 Metatranscriptome 3300008861 *Microbiome Permanent Draft Microbial communities from harbor seals stranded along the coast of California, USA Microbial communities from harbor seals stranded along the coast of California, USA - com2 Oregon State University 3300008861 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Brain Nervous system Unclassified Harbor seal brain 37.8592 -122.4853 414068063 747871 1 3 183 19 ERX1190722 0.0 Metatranscriptome 3300041853 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_34 MetaT AgResearch, New Zealand, Mosgeil 3300041853 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 25165847 52416 180 89 1123 210 0.0 Metatranscriptome 3300031900 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen2, Rep 3, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031900 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 25298628 30819 2 0 8 1 SRX5359800, SRX5359799 Unrestricted 0.0 Metatranscriptome 3300031677 *Microbiome Permanent Draft Hardwood forest soil microbial communities from various locations in the United States Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031677 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jdraff@indiana.edu Jonathan Raff No Environmental Terrestrial Temperate forest Soil Bulk soil hardwood forest soil 39.0844 -86.4705 49239377 112869 44 491 472 2697 SRX5649049 Unrestricted 0.0 Metatranscriptome 3300030821 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T0 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030821 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 31862205 65098 88 62 178 245 SRX5794834 Unrestricted 25.31 Metatranscriptome 3300026379 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0916-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026379 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 47570695 90910 41 50 17 35 SRX4796191 Unrestricted 67.74 Metatranscriptome 3300036534 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRU5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036534 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 59.9989 10.7903 81647146 150059 114 33 175 167 SRX8135101 Unrestricted 0.0 Metatranscriptome 3300042425 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_71_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042425 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 49361203 63530 1 1 11 0 Unrestricted 306.63 Metatranscriptome 3300050698 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae culture inoculated with mixed bacterial community from LLNL, Livermore, California, USA - f23_d5_A_S36 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050698 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 24239022 32644 4 0 3 3 Restricted 130.11 Metatranscriptome 3300026436 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0926-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026436 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 167219172 280128 13 22 10 24 SRX4796389 Unrestricted 110.89 Metatranscriptome 3300035292 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Antarctic Ocean - DFB2_11 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035292 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified Seawater -46.5954 142.0314 365962571 759470 1047 82 2057 1645 SRX8226812 Unrestricted 20.07 Metatranscriptome 3300002609 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS903_30_13L 3300002609 Metatranscriptome Analysis released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 365165 1182 24 5 126 12 0.0 Metatranscriptome 3300053655 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T4_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053655 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 90359353 188880 63 15 187 106 Unrestricted 0.0 Metatranscriptome 3300031148 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_D6_4mM_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031148 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 24131050 35981 1 0 2 4 SRX5783603 Unrestricted 25.87 Metatranscriptome 3300008906 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of annulated tree boas from Steinhart Aquarium in San Francisco, USA - CAS04_Liver University of California, San Francisco 3300008906 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Biliary tract Digestive system Liver Liver 4525026 12805 0 0 0 0 SRX170619 0.0 Metatranscriptome 3300049468 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_17 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300049468 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 443854254 981424 331 101 1153 528 Unrestricted 30.77 Metatranscriptome 3300030628 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Bnb6 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030628 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 610372354 1254072 306 354 2454 1547 SRX4546989 Unrestricted 0.0 Metatranscriptome 3300019260 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Metatranscriptome of peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin06_10_metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019260 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 231675997 553951 295 343 4737 2307 SRX3887007 Unrestricted 0.0 Metatranscriptome 3300018897 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_152 - TARA_N000002777 Canada's Michael Smith Genome Sciences Centre 3300018897 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 43.6825 -16.8412 354212844 540040 0 14 1 96 0.0 Metatranscriptome 3300041513 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Bulk soil microbial community from Lincoln, Canterbury, New Zealand - BS17_1 MetaT AgResearch, New Zealand, Mosgeil 3300041513 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Environmental Terrestrial Unclassified Soil Agricultural land Dairy farm pasture soil -43.648506 172.343549 9698681 17990 207 225 1211 725 0.0 Metatranscriptome 3300041480 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover leaf microbial community from Lincoln, Canterbury, New Zealand - WCL18_11 MetaT AgResearch, New Zealand, Mosgeil 3300041480 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 11177483 18561 63 110 347 218 0.0 Metatranscriptome 3300004102 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF212 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004102 Metatranscriptome Analysis megahit v. 0.2.0 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.531427 -72.189946 139373593 474952 59 52 177 295 SRX2013925 Unrestricted 0.0 Metatranscriptome 3300004595 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_125SG_5_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004595 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 92326776 255700 24904 10281 59348 21818 SRX2518431 Unrestricted 0.0 Metatranscriptome 3300011288 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S17 NADW_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011288 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 33906683 78783 31 15 3480 606 SRX3787211 Unrestricted 0.0 Metatranscriptome 3300018604 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_131 - TARA_N000002362 (ERX1782200-ERR1712077) Canada's Michael Smith Genome Sciences Centre 3300018604 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 22.7384 -158.0715 60108988 137364 6 29 31 304 0.0 Metatranscriptome 3300009322 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from the North Atlantic ocean - ACM31 University of Georgia 3300009322 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 12527026 40449 12 35 57 102 0.0 Metatranscriptome 3300017125 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in K/2 Ian medium, 22 C, 35 psu salinity and 213 ?mol photons light - unclassified eukaryote RCC 2339 (MMETSP1310) National Center for Genome Resources 3300017125 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 34.35 130.0833333 27823655 32761 24 8 44 12 0.0 Metatranscriptome 3300031815 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA2 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031815 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 49.044 13.617 44494621 69403 41 33 429 288 SRX5243275, SRX4454982 Unrestricted 0.0 Metatranscriptome 3300004560 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004560 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 61474029 215562 5233 1756 16983 3741 Unrestricted 0.0 Metatranscriptome 3300046554 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - P2-R1-B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046554 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.357 19.047 113793251 284472 107 94 409 367 Unrestricted 55.97 Metatranscriptome 3300019234 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_deep_8_15_core_3 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019234 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment wetland 41.3778 -82.5111 215487343 494779 404 155 18240 1456 Unrestricted 0.0 Metatranscriptome 3300010974 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 corn stover (Eukaryote Community Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300010974 Metatranscriptome Analysis MEGAHIT v. 1.0.4b No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 40.102108 -88.227299 427848565 846331 84 435 309 716 SRX5780594 Unrestricted 0.0 Metatranscriptome 3300037546 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Metatranscriptome of lab enriched marine microbial communities from Marineland, Florida, USA - SW_R3_TP1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037546 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6475 -82.3464 151827827 314611 181 42 456 252 SRX9144795 Unrestricted 67.37 Metatranscriptome 3300010865 *Microbiome Permanent Draft Forest soil eukaryotic communities from Alaska, USA, for a soil warming experiment in a boreal forest Boreal forest soil eukaryotic communities from Alaska, USA - C3-3 Metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010865 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes treseder@uci.edu Kathleen Treseder No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Boreal forest soil 63.883 -145.733 228457181 516796 369 662 18088 8401 SRX3007275 Unrestricted 0.0 Metatranscriptome 3300017357 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine host-associated eukaryotic communities from unknown location in f/2 medium with natural seawater, 50% L1 mix, no silicate, at 29 C, 35 psu salinity and 369 ?mol photons light - Symbiodinium sp. C1 (MMETSP1369) National Center for Genome Resources 3300017357 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Microbial Unclassified Dinoflagellates Unclassified Marine host-associated 55176007 75380 38 12 82 13 SRX554236 0.0 Metatranscriptome 3300012728 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES043 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012728 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 192575528 385804 102 81 401 2776 SRX3010752 Unrestricted 0.0 Metatranscriptome 3300045467 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P26SSC2_190918_f (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300045467 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 74007089 191511 68 197 848 908 SRX20650846 Unrestricted 118.91 Metatranscriptome 3300034941 *Microbiome Permanent Draft Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S41 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034941 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes colin.averill@usys.ethz.ch Colin Averill No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 36.0 -78.0 155260646 312310 7 39 240 196 SRX7603310 Unrestricted 113.08 Metatranscriptome 3300029591 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Thr2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029591 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 23672283 46614 5 4 85 35 SRX5356187 Unrestricted 53.01 Metatranscriptome 3300010890 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS6_55_TP2_12H Marine Biological Laboratory 3300010890 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 230911 633 96 4 93 7 0.0 Metatranscriptome 3300049100 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 14 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049100 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 42.4305 -81.2062 11205486 21640 7 6 32 22 Restricted 74.2 Metatranscriptome 3300027046 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0419-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300027046 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 143212563 264394 5 3 4 73 SRX5250647 Unrestricted 210.17 Metatranscriptome 3300003575 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA Grassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_25 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003575 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes pettridge2@llnl.gov, nuccio1@llnl.gov; pettridge2@llnl.gov Jennifer Pett-Ridge, Erin Nuccio; Jennifer Pett-Ridge No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.972988 -123.116539 105521879 301250 290 191 1036 1675 SRX2562473 Unrestricted 0.0 Metatranscriptome 3300004534 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 58_HOW8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004534 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 29213652 72303 221 436 1012 1396 SRX2724077 Unrestricted 0.0 Metatranscriptome 3300041535 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_290 MetaT AgResearch, New Zealand, Mosgeil 3300041535 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 32589324 73349 292 104 2146 162 0.0 Metatranscriptome 3300006089 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS908_Marker33_RNA Marine Biological Laboratory 3300006089 Metatranscriptome Analysis CLC genomics wb7 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse vent fluid, hydrothermal vents 45.9332 -129.9823 1579668 5867 110 18 397 24 0.0 Metatranscriptome 3300059606 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 159R_AD_T3_R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059606 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 30371844 73479 83 137 374 751 Unrestricted 35.62 Metatranscriptome 3300017128 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in K medium w/o silicate, at 23 C, 0 psu salinity and 659 ?mol photons light - Hemiselmis andersenii CCMP 1180 (MMETSP1042) National Center for Genome Resources 3300017128 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 32192993 45252 8 10 20 15 0.0 Metatranscriptome 3300031818 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen6, Rep 3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031818 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 16201536 30518 4 0 43 2 SRX5359921 Unrestricted 18.87 Metatranscriptome 3300008665 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.1.4LN.15dpc CCME-COLORADO 3300008665 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 3371839 15047 39 1 667 7 0.0 Metatranscriptome 3300021926 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean - 30m ANT-15 ARK-20-3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021926 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine -17.283 2.9768 124316756 253337 57 45 118 170 SRX3336997 Unrestricted 0.0 Metatranscriptome 3300010306 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010306 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 38.0754 -76.1533 62829182 124479 228 97 1362 2218 SRX2526847 Unrestricted 0.0 Metatranscriptome 3300048979 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 78 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048979 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.5186 -82.6406 3622378 7252 0 5 20 27 Restricted 91.77 Metatranscriptome 3300041903 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaT_extra_run AgResearch, New Zealand, Mosgeil 3300041903 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Rhizoplane Roots Dairy farm pasture -43.648506 172.343549 3923659 7645 510 537 2230 1188 0.0 Metatranscriptome 3300049465 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_14 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300049465 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 527417388 1162588 381 102 1283 543 Unrestricted 33.53 Metatranscriptome 3300030625 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO122-ANR120SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030625 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.3189 -71.212 1036698891 2282216 124 228 3895 7677 SRX4011193 Unrestricted 0.0 Metatranscriptome 3300008690 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-57 University of Hawaii 3300008690 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 1132475 1889 10 4 264 79 0.0 Metatranscriptome 3300008591 *Microbiome Permanent Draft Microbial communities of corn and soybean rhizosphere soil from Ohio, USA Microbial communities of soybean rhizosphere soil from Ohio, USA - Soybean_Powermax_2b Auburn University 3300008591 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Plants Rhizosphere Roots Soil Rhisosphere soil 6439924 25899 661 309 16053 2198 SRX1078291 0.0 Metatranscriptome 3300004598 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 72 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004598 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 91472442 276013 6063 2562 22688 5936 Unrestricted 0.0 Metatranscriptome 3300023549 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 63R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023549 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 5684311 13341 8 9 193 179 SRX4475763 Unrestricted 73.51 Metatranscriptome 3300031737 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean - PS103-3.R1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031737 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified marine -51.9926 2.0992 1632406598 3005626 22 8 34 189 SRX5356506 Unrestricted 14.13 Metatranscriptome 3300046563 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - P3-R3-A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046563 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.0477 171827503 386716 217 162 789 652 Unrestricted 35.66 Metatranscriptome 3300011285 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S23 NT38 metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011285 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 29030342 64590 108 377 1026 2631 SRX2524447 Unrestricted 0.0 Metatranscriptome 3300029274 *Microbiome Permanent Draft Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Soil microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B3.stno.R1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300029274 Metatranscriptome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes colemanderr@gmail.com Devin Coleman-Derr No Environmental Terrestrial Unclassified Soil Agricultural land Field Soil 36.339058 -120.12031 22503338 45013 206 1437 2091 4475 0.0 Metatranscriptome 3300036890 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Metatranscriptome of soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_July_plot1_rep3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036890 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6539 -80.6288 345664495 806845 820 341 2930 2326 SRX8186497 Unrestricted 35.9 Metatranscriptome 3300012725 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES137 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012725 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 178608835 368240 78 287 946 4995 SRX3011200 Unrestricted 0.0 Metatranscriptome 3300007573 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C_top_diel_T=1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007573 Metatranscriptome Analysis megahit v. 0.2.0 No Yes binskeep@montana.edu, binskeep@montana.edu; jim.fredrickson@pnnl.gov William Inskeep, William P. Inskeep; Jim Fredrickson No Environmental Aquatic Unclassified Thermal springs Unclassified Microbial mats 44.7219 -110.7021 13069388 35468 3178 4 4627 24 SRX5333052 Unrestricted 0.0 Metatranscriptome 3300008856 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_3062 Massachusetts Institute of Technology 3300008856 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 7328224 24652 17 5 223 529 0.0 Metatranscriptome 3300003307 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Elkhorn Slough, Monterey Bay, California, USA - CR8A/B (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003307 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes pettridge2@llnl.gov, pettridge2@llnl.gov; jim.fredrickson@pnnl.gov Jennifer Pett-Ridge, Jennifer Pett-Ridge; Jim Fredrickson No Environmental Aquatic Intertidal zone Marine Estuary: Microbial mat Hypersaline mat 36.7999 -121.7999 107170253 238647 49 264 399 1238 SRX2562215 Unrestricted 0.0 Metatranscriptome 3300046589 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - G1-R1-A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046589 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.048 150764793 335137 128 91 571 299 Unrestricted 36.28 Metatranscriptome 3300034345 *Microbiome Permanent Draft Phytoplankton bloom bacterial communities from coast of New Jersey, USA Phytoplankton bloom bacterial communities from coast of New Jersey, USA - 30 meters Michigan State University 3300034345 Metatranscriptome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy No Yes learm1dr@cmich.edu Deric Learman No Environmental Aquatic Coastal Marine Unclassified phytoplankton bloom 37.8665611 -70.23155278 776943388 2365697 1617 960 3812 2926 0.0 Metatranscriptome 3300031081 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_159 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031081 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92057636 -106.94874802 98670139 212780 461 428 2316 1630 SRX8133519 Unrestricted 16.97 Metatranscriptome 3300036656 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp01_R26 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036656 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 269436554 537423 158 74 341 783 SRX8835503 Unrestricted 44.38 Metatranscriptome 3300003578 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003578 Metatranscriptome Analysis rnnotator v. 3.3.1 Reverted to private per Tijana Glavina del Rio (Oct 2014) No Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Unclassified Roots Unclassified Arabidopsis root 35.9082 -79.0499 188464535 356569 2 0 9 0 SRX2557241, SRX2557240 Unrestricted 0.0 Metatranscriptome 3300017607 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 15 C, 28 psu salinity and 679 ?mol photons light - Alexandrium fundyense CCMP 1719 (MMETSP0197) (SRX549004-SRR1294390) National Center for Genome Resources 3300017607 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 43.1 70.782 9982860 23565 0 7 0 1 0.0 Metatranscriptome 3300067031 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Metatranscriptome of seawater eukaryotic communities from East Sound, Orcas Island, WA, USA - ORCAS_euks_20210607_11_05 (Eukaryote Community Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300067031 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 599813188 1215162 122 43 235 366 Unrestricted 0.0 Metatranscriptome 3300004492 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 85_LOW11 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004492 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 15359768 33637 131 79 590 246 SRX2725271 Unrestricted 0.0 Metatranscriptome 3300046267 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_4_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046267 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 96518430 150005 1 0 17 2 Restricted 127.05 Metatranscriptome 3300018793 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_076 - TARA_N000000876 (ERX1789367-ERR1719325) Canada's Michael Smith Genome Sciences Centre 3300018793 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -21.0716 -35.3964 177680568 402928 1 31 13 230 0.0 Metatranscriptome 3300031123 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_196 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031123 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040586 -106.94868265 167591923 398004 861 617 2749 2630 SRX8134586 Unrestricted 34.48 Metatranscriptome 3300012379 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012379 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 120710572 292579 78 398 8635 4006 Unrestricted 0.0 Metatranscriptome 3300046144 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-179 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046144 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4963 -64.2287 92902759 222278 802 46 1377 657 Unrestricted 24.95 Metatranscriptome 3300027953 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0761-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300027953 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 281168160 486384 27 15 21 52 SRX5254550 Unrestricted 99.93 Metatranscriptome 3300011049 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 35 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011049 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 35762407 86427 112 198 7362 1083 Unrestricted 0.0 Metatranscriptome 3300018714 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_111 - TARA_N000001812 (ERX1782478-ERR1711985) Canada's Michael Smith Genome Sciences Centre 3300018714 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -16.9601 -100.6335 127298570 302761 63 11 445 273 0.0 Metatranscriptome 3300028322 *Microbiome Permanent Draft Black Band Disease transitions Coral surface microbial communities from stony corals with Black-band disease (BBD), Florida Keys National Marine Sanctuary, USA - LKT2 University of Florida 3300028322 Metatranscriptome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Coral Cnidaria Surface coral surface 24.5484806 -81.4059137 111837137 297289 7 38 41 73 0.0 Metatranscriptome 3300038149 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_M1_C1_D3_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038149 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 19319140 37469 322 221 5903 722 SRX9386287 Unrestricted 212.14 Metatranscriptome 3300024554 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepB_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024554 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 219840024 429514 81 178 856 1311 SRX4547615 Unrestricted 25.57 Metatranscriptome 3300021244 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from nest from French Guiana - 12-6 mRNA SA University of Luxembourg 3300021244 Metatranscriptome Analysis CLC Genomics Workbench Version 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 5.06224 -53.047407 86921399 285663 0 8 6 37 0.0 Metatranscriptome 3300047417 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 819571cc-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047417 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 208680847 515861 378 290 1787 1692 Unrestricted 40.76 Metatranscriptome 3300052463 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 90-S41Day28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052463 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 122391820 243199 22 7 99 38 Unrestricted 47.78 Metatranscriptome 3300017257 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Baffin Bay in ProV 50 medium with seawater and antibiotics, 6 C, 18 psu salinity and 511 ?mol photons light - unclassified eukaryote CCMP 2436 (MMETSP0984) National Center for Genome Resources 3300017257 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 76.3208 -75.8172 36039523 42576 31 12 35 22 0.0 Metatranscriptome 3300031483 *Microbiome Permanent Draft Soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - STER_N_R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031483 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thb15@psu.edu Terrence Bell No Engineered Artificial ecosystem Surface biofilm Soil microcosm Unclassified soil 40.7997 -77.8629 5228071 9257 19 0 13 11 SRX5810638 Unrestricted 387.84 Metatranscriptome 3300032934 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_17JUL2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032934 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.372 222073440 392600 96 52 145 417 SRX7519752 Unrestricted 76.42 Metatranscriptome 3300032761 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_26JUN2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032761 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.372 155805968 274357 67 43 91 278 SRX7519607 Unrestricted 88.05 Metatranscriptome 3300031558 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CBN3_325_SCM (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031558 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 80.9595 -132.1842 85181608 177836 115 18 189 771 SRX5653593 Unrestricted 0.0 Metatranscriptome 3300008374 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34694 J. Craig Venter Institute (JCVI) 3300008374 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 19867 39 0 0 1 0 0.0 Metatranscriptome 3300046636 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - P2-R1-A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046636 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.357 19.047 87984634 205960 118 242 461 986 Unrestricted 23.57 Metatranscriptome 3300010419 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS908_80_TP1_12L Marine Biological Laboratory 3300010419 Metatranscriptome Analysis CLC genomics wb7 released per JGI data release policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 1111188 2480 73 0 171 3 0.0 Metatranscriptome 3300006692 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP0101 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006692 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 21.45 -23.45 62958440 153961 2709 760 6977 2687 SRX3299067 Unrestricted 0.0 Metatranscriptome 3300037712 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of photosynthetic mat microbial communities from Octopus Spring, YNP, Wyoming, United States - 20090728 1745 sample t2cd (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037712 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 151803750 374945 1 0 94 1 SRX9381222 Unrestricted 216.57 Metatranscriptome 3300004974 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI047_200m_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004974 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 132177188 367807 3425 1128 10571 3672 Unrestricted 0.0 Metatranscriptome 3300018567 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS683_3p0_dT J. Craig Venter Institute (JCVI) 3300018567 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 21930225 58953 139 186 237 318 0.0 Metatranscriptome 3300017488 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, low P, at 18 C, 32 psu salinity and 645 ?mol photons light - Prorocentrum minimum CCMP 1329 (MMETSP0056) National Center for Genome Resources 3300017488 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 74358428 105993 21 11 55 20 0.0 Metatranscriptome 3300013510 *Microbiome Permanent Draft Roseovarius nubinhibens ISM and Alexandrium tamarense modeled microbial communities from the University of Georgia, USA Metatranscriptome of Roseovarius nubinhibens ISM and Alexandrium tamarense co-culture from University of Georgia, USA - T8_replete_A metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013510 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes mmoran@uga.edu Mary Ann Moran No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Laboratory simulated co-culture 33.933 -83.366 8107578 15938 0 0 495 18 SRX3020793 Unrestricted 0.0 Metatranscriptome 3300033526 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_28AUG2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300033526 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.372 221791821 406441 105 71 143 455 SRX7706895 Unrestricted 56.7 Metatranscriptome 3300032440 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day7_9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032440 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 25609423 42773 8 2 39 10 SRX6857177 Unrestricted 174.65 Metatranscriptome 3300019079 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_039 - TARA_N000000052 (ERX1782316-ERR1711880) Canada's Michael Smith Genome Sciences Centre 3300019079 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 18.5745 66.4895 19193277 52394 8 39 45 179 0.0 Metatranscriptome 3300053658 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T2_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053658 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 108954272 215426 63 27 210 134 Unrestricted 0.0 Metatranscriptome 3300006709 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP727 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006709 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -31.83 6.86 85742477 275854 484 2472 1657 6817 SRX3299393 Unrestricted 0.0 Metatranscriptome 3300010102 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_4_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010102 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 59697944 141846 115 521 21442 5043 Unrestricted 0.0 Metatranscriptome 3300008039 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Puerto Morelos, Mexico - Orbicella 8 T B metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300008039 Metatranscriptome Analysis megahit v. 0.2.0 No Yes momedinamunoz@gmail.com Monica _ Medina, Medina Medina No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral host 20.8778 -86.8431 287641114 428915 84 96 296 385 SRX3362320 Unrestricted 0.0 Metatranscriptome 3300042428 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_sp7_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042428 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 45572911 59408 1 0 11 1 Unrestricted 356.22 Metatranscriptome 3300050695 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae culture inoculated with mixed bacterial community from LLNL, Livermore, California, USA - f20_d5_F_S31 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050695 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 37511650 64180 3 0 20 1 Restricted 116.19 Metatranscriptome 3300035623 *Microbiome Permanent Draft Sediment microbial communities from Lake Washington near Medina, WA, United States Metatranscriptome of methane-enriched sediment microbial communities from Lake Washington, WA, United States - HO-FL-FA-3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035623 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment sediment 47.6215 -122.2558 88804927 101921 8 132 16 155 SRX8379985 Unrestricted 82.88 Metatranscriptome 3300012743 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES067 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012743 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.041 -89.686 51285656 92474 68 38 1256 1487 SRX3010862 Unrestricted 0.0 Metatranscriptome 3300016821 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in L1 medium w/o silica, 20 C, 35 psu salinity and 703 ?mol photons light - Ostreococcus mediterraneus clade D RCC 1621 (MMETSP0930) National Center for Genome Resources 3300016821 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 3.145 42.488 12184555 11658 15 1 19 1 0.0 Metatranscriptome 3300016972 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in F/2 medium with seawater in replete condition, 20 C, 35 psu salinity and 406 ?mol photons light - Thalassiosira rotula GSO102 (MMETSP0913) National Center for Genome Resources 3300016972 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 48.629353 -122.957542 15317537 24455 25 11 35 13 0.0 Metatranscriptome 3300018553 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS677_0p8 J. Craig Venter Institute (JCVI) 3300018553 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 58.581234 18.232801 7063253 22633 50 16 1005 594 0.0 Metatranscriptome 3300031674 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from Antarctic Ocean - PS103-5.R1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031674 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified marine -59.0467 0.0779 261963731 522427 5 1 9 56 SRX5356512 Unrestricted 36.12 Metatranscriptome 3300030885 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030885 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 59.9989 10.7903 40469156 93316 142 137 660 750 SRX5351391 Unrestricted 0.0 Metatranscriptome 3300000831 *Microbiome Permanent Draft Soil microbial communities from four geographically distinct crusts in the Colorado Plateau and Sonoran desert Soil microbial communities from Moab, Utah, sample - Soil Crust Dry out, 3 days (biological replicate B) D5B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300000831 Metatranscriptome Analysis No Yes elbrodie@lbl.gov, ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Desert Soil Unclassified Soil 38.714694 -109.692944 191259902 596117 75 506 369 1448 SRX3311668 Unrestricted 0.0 Metatranscriptome 3300017045 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in K medium w/o silicate, at 23 C, 0 psu salinity and 281 ?mol photons light - Hemiselmis andersenii CCMP 441 (MMETSP1043) National Center for Genome Resources 3300017045 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 25648402 38398 4 10 4 8 0.0 Metatranscriptome 3300005650 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_055 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005650 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Permafrost soil 68.6137 -149.3144 587636048 1681363 371 3060 1462 6314 SRX2522113 Unrestricted 0.0 Metatranscriptome 3300008918 *Microbiome Permanent Draft Microbial communities of nutrient treated water from Blanes Bay, Barcelona, Spain Microbial communities of nutrient treated water from Blanes Bay, Barcelona, Spain - KB2 Sodertorn University 3300008918 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Bay water 41.666 2.8 38523772 149772 536 363 3226 3548 ERX1055474 0.0 Metatranscriptome 3300022532 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022532 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 528778456 1231283 267 574 3890 3637 SRX4403122 Unrestricted 0.0 Metatranscriptome 3300046603 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-64 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046603 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4205 -64.1498 85564463 209102 736 29 1160 424 Unrestricted 21.27 Metatranscriptome 3300008311 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.8.3V73.15dpc CCME-COLORADO 3300008311 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 6213471 23786 23 2 290 5 0.0 Metatranscriptome 3300050366 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T2_1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050366 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 227659428 389911 23 18 101 82 Unrestricted 95.29 Metatranscriptome 3300010250 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0400 MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010250 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 98976424 198437 2465 853 19596 2666 SRX2524381, SRX2524382 Unrestricted 0.0 Metatranscriptome 3300017263 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Penn Cove, Washington, USA in f/2 medium with Bay of Fundy seawater, no silicate, 21 C, 35 psu salinity and 397 ?mol photons light - Tetraselmis astigmatica CCMP 880 (MMETSP0804) National Center for Genome Resources 3300017263 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh marine 48.225 -122.64 38994242 44922 4 3 5 5 0.0 Metatranscriptome 3300052457 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 27-S43Day28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052457 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 163109530 306519 29 1 102 134 Unrestricted 68.53 Metatranscriptome 3300028671 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Metatranscriptome of marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028671 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified marine 50.0 -145.0 209784289 395667 121 11 194 500 SRX5337940 Unrestricted 14.74 Metatranscriptome 3300034449 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050630_2000_MSt2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034449 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 45807318 99563 0 0 40 0 SRX8241667 Unrestricted 274.87 Metatranscriptome 3300002346 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI - J_51min_Aerobic (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002346 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes tmcmahon@cae.wisc.edu, tmcmahon@engr.wisc.edu; tmcmahon@cae.wisc.edu Sludge Phage users, Katherine McMahon; Trina McMahon Yes 20148930, 26555245 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.078418 -89.386482 182759773 323437 10 47 35 187 SRX2554578 Unrestricted 0.0 Metatranscriptome 3300023698 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 27R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023698 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 94697933 205103 96 40 518 976 SRX4474498 Unrestricted 29.1 Metatranscriptome 3300011321 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S12 Bottom_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011321 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 114204208 248932 35 37 2837 834 SRX3196644 Unrestricted 0.0 Metatranscriptome 3300018582 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_132 - TARA_N000002402 (ERX1789727-ERR1719292) Canada's Michael Smith Genome Sciences Centre 3300018582 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 31.5237 -159.0351 34520656 82198 0 28 2 149 0.0 Metatranscriptome 3300039280 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Bb2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300039280 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Unclassified Soil Orchard soil soil 48.3625 5.7397 248178129 564108 377 285 1933 1326 SRX9404281 Unrestricted 20.26 Metatranscriptome 3300031956 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLU1 metaT (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031956 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified Plant litter 49.043 13.6183 17695226 34850 69 574 716 2742 SRX5229518, SRX3937009 Unrestricted 0.0 Metatranscriptome 3300017289 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Atlantic Ocean in K medium with artificial sea water, no silicate, 21 C, 35 psu salinity and 466 ?mol photons light - Isochrysis sp. CCMP1244 (MMETSP1388) National Center for Genome Resources 3300017289 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 38.3048 -69.6192 38201435 50028 1 3 5 1 0.0 Metatranscriptome 3300003722 *Microbiome Permanent Draft Soil microbial communities from four geographically distinct crusts in the Colorado Plateau and Sonoran desert Soil microbial communities from Colorado Plateau and Sonoran desert - Soil Crust after wet up 2C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003722 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes elbrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Desert Soil Unclassified Soil 38.42 -109.4099 2352205 5634 297 139 967 363 Unrestricted 0.0 Metatranscriptome 3300016888 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, no nitrate, 14 C, 36 psu salinity and 154 ?mol photons light - Skeletonema menzellii CCMP 793 (MMETSP0604) National Center for Genome Resources 3300016888 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 41.566 -70.5842 26072210 28359 14 20 23 36 0.0 Metatranscriptome 3300036537 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Metatranscriptome of soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_July_plot1_rep2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036537 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6539 -80.6288 218888980 497205 496 206 1958 1581 SRX8186429 Unrestricted 29.94 Metatranscriptome 3300030532 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO410-VDE108SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030532 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.3092 -71.1031 309250176 687625 88 92 1590 994 SRX4011340 Unrestricted 0.0 Metatranscriptome 3300008573 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-19 University of Hawaii 3300008573 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 213684 314 3 0 65 10 0.0 Metatranscriptome 3300052385 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_176B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052385 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Bulk soil Soil 38.992973 -123.067448 156486050 408968 303 191 1754 1272 Unrestricted 87.38 Metatranscriptome 3300018970 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_125 - TARA_N000002025 (ERX1789437-ERR1719295) Canada's Michael Smith Genome Sciences Centre 3300018970 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.892 -142.6358 524897382 1152429 7 44 20 264 0.0 Metatranscriptome 3300031390 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_L6_8mM_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031390 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 22333342 33860 0 0 1 6 SRX5783475 Unrestricted 44.6 Metatranscriptome 3300046282 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_4_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046282 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 55546533 93628 1 0 16 4 Restricted 108.36 Metatranscriptome 3300017181 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in GSe medium with ammonium, 15 C, 32 psu salinity and 470 ?mol photons light - Pelagococcus subviridis CCMP 1429 (MMETSP0884) National Center for Genome Resources 3300017181 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 49.9166 -145.1166 24509380 34788 2 1 4 2 0.0 Metatranscriptome 3300023556 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023556 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 49.0431 13.617 26623014 38092 14 23 278 179 SRX5243237, SRX4454779 Unrestricted 0.0 Metatranscriptome 3300018607 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of freshwater lake microbial communities from Lake Tornetrask, Sweden - GS667_3p0_dT J. Craig Venter Institute (JCVI) 3300018607 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 68.355835 18.821667 55130710 141122 1258 622 1962 1465 0.0 Metatranscriptome 3300036350 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5CB15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036350 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 36578203 72427 516 1425 4488 5179 SRX8379344 Unrestricted 45.78 Metatranscriptome 3300018813 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_066 - TARA_N000000809 (ERX1782297-ERR1712172) Canada's Michael Smith Genome Sciences Centre 3300018813 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -34.9449 17.9189 193370638 454960 26 17 116 464 0.0 Metatranscriptome 3300017023 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in ESAW medium with 100 uM nitrogen, at 25 C, 20 psu salinity and 256 ?mol photons light - Chattonella subsalsa CCMP 2191 (MMETSP0947) National Center for Genome Resources 3300017023 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 32005988 36716 8 6 6 9 0.0 Metatranscriptome 3300026572 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepB_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026572 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 294139966 610924 144 209 1297 2075 SRX4797131 Unrestricted 18.16 Metatranscriptome 3300012403 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_8_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012403 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 199527385 475169 69 642 4361 5719 Unrestricted 0.0 Metatranscriptome 3300004537 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 82_HOW10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004537 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 31745166 74863 200 41 984 125 SRX2725267 Unrestricted 0.0 Metatranscriptome 3300018771 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_102 - TARA_N000001658 (ERX1789535-ERR1719438) Canada's Michael Smith Genome Sciences Centre 3300018771 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -5.2514 -85.1696 168513367 373893 2 14 14 147 0.0 Metatranscriptome 3300038156 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_N3_C1_D3_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038156 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 31919734 58733 543 1427 7342 3828 SRX9390235 Unrestricted 107.4 Metatranscriptome 3300011056 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 16 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011056 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 45162916 108889 181 737 9304 1741 Unrestricted 0.0 Metatranscriptome 3300016681 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES152 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016681 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.099 -89.405 50211842 104253 138 119 1946 2022 SRX3780032 Unrestricted 0.0 Metatranscriptome 3300045464 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P24SSC2_191109_c (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300045464 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 29816956 73724 61 200 781 1007 SRX20650867 Unrestricted 438.46 Metatranscriptome 3300046253 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_2_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046253 Metatranscriptome Analysis megahit v. 2021-07-15 17:15:45 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated, Environmental Arthropoda, Terrestrial Insects nest Ant dump, Nest Nest dump ant dump 43.0765 -89.412 107864432 174791 4 40 189 228 Restricted 149.76 Metatranscriptome 3300018835 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_047 - TARA_N000000284 (ERX1782152-ERR1712198) Canada's Michael Smith Genome Sciences Centre 3300018835 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -2.0409 72.1645 253206965 469340 17 48 42 237 0.0 Metatranscriptome 3300008396 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34714 J. Craig Venter Institute (JCVI) 3300008396 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 32608 99 0 0 2 0 0.0 Metatranscriptome 3300007591 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S15 DCM_B metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007591 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 54411900 188214 426 1180 1192 3851 SRX2522157 Unrestricted 0.0 Metatranscriptome 3300017354 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in Sterile coastal seawater, 18 C, 34 psu salinity and 590 ?mol photons light - Oxyrrhis marina LB1974 (MMETSP1426) National Center for Genome Resources 3300017354 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 53100319 75131 19 13 28 20 0.0 Metatranscriptome 3300008849 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_2023 Massachusetts Institute of Technology 3300008849 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 5744552 19815 20 6 327 575 0.0 Metatranscriptome 3300009731 *Microbiome Permanent Draft Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling - T6-HHNO3 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009731 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes milachis@u.washington.edu Ludmila Chistoserdova No Engineered Modeled Plant nodule Simulated communities (microbial mixture) Unclassified Methane-oxidizing 47.6193 -122.2449 42297289 105027 0 0 282 3 SRX2525433 Unrestricted 0.0 Metatranscriptome 3300052732 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MT_050418 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052732 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 26184483 56245 15 4 696 19 Unrestricted 0.0 Metatranscriptome 3300016726 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011504BT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016726 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 235941994 523093 234 649 4066 8639 SRX3780727 Unrestricted 0.0 Metatranscriptome 3300036649 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Growout1_12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036649 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 269703756 575463 799 59 1564 1199 SRX8821307 Unrestricted 19.86 Metatranscriptome 3300019237 *Microbiome Permanent Draft Anaerobic biogas reactor microbial communites from Washington, USA Anaerobic biogas reactor microbial communites from Seattle, Washington, USA - Biogas_R1-A RNA time zero (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019237 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dacb@uw.edu David Beck No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic biogas reactor 47.6525 -122.3049 245761291 496762 36 204 21049 2414 SRX3905010 Unrestricted 0.0 Metatranscriptome 3300010977 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 corn stover (Eukaryote Community Metatranscriptome) (version 6) (version 5) DOE Joint Genome Institute (JGI) 3300010977 Metatranscriptome Analysis MEGAHIT v. 1.0.4b No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 40.102108 -88.227299 472813271 964676 103 509 369 809 SRX5780594 Unrestricted 0.0 Metatranscriptome 3300008773 *Microbiome Permanent Draft Microbial communities of mouse gut induced with colitis from Vienna, Austria Microbial communities of mouse gut induced with colitis from Vienna, Austria - 9976_CAGTT University of Vienna 3300008773 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Stomach Digestive system Forestomach Foregut of mice 29568465 114934 169 2 1697 26 SRX326442 0.0 Metatranscriptome 3300004696 *Microbiome Permanent Draft Wastewater sludge bioreactor microbial communities from Fort Collins, Colorado Wastewater sludge bioreactor microbial communities from Fort Collins, Colorado -2 Colorado State University 3300004696 Metatranscriptome Analysis Unknown released per JGI data release policy No Yes jallison@colostate.edu Joseph Allison No Engineered Bioreactor Unclassified Unclassified Unclassified Wastewater sludge bioreactor 40.5852602 -105.084423 0 0 0 0 0 0 0.0 Metatranscriptome 3300024535 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Miss_RepC_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024535 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 193631744 393425 34 125 580 817 SRX4547801 Unrestricted 26.16 Metatranscriptome 3300031492 *Microbiome Permanent Draft Soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - STER_N_R5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031492 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thb15@psu.edu Terrence Bell No Engineered Artificial ecosystem Surface biofilm Soil microcosm Unclassified soil 40.7997 -77.8629 25223767 41645 18 0 64 15 SRX5810963 Unrestricted 290.63 Metatranscriptome 3300036145 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10CP15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036145 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 59025934 124123 539 1672 3755 5483 SRX8377976 Unrestricted 40.52 Metatranscriptome 3300006683 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP1090 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006683 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -29.4862 82.3743 33543253 110552 752 2449 2297 4785 SRX3325066 Unrestricted 0.0 Metatranscriptome 3300036469 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen2, Rep 1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036469 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 53090377 81065 2 0 44 0 SRX8381889 Unrestricted 39.35 Metatranscriptome 3300016981 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in ESAW medium with 100 uM nitrogen, at 25 C, 20 psu salinity and 519 ?mol photons light - Chattonella subsalsa CCMP 2191 (MMETSP0948) National Center for Genome Resources 3300016981 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 28451092 33910 9 3 10 1 0.0 Metatranscriptome 3300039430 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metataranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0817M20re (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300039430 Metatranscriptome Analysis MEGAHIT v. 1.2.9 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0387 263867840 565817 311 238 10845 693 SRX8669690 Unrestricted 22.03 Metatranscriptome 3300050577 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae axenic culture microbial communities from LLNL, Livermore, California, USA - f10_d2_W_S19 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050577 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 24679765 27219 3 1 2 2 Restricted 346.55 Metatranscriptome 3300052438 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 28-S43Day7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052438 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 77986064 160381 20 0 65 1 Unrestricted 115.06 Metatranscriptome 3300048944 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 21 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048944 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 42.4305 -81.2062 10516535 23047 15 7 45 32 Restricted 79.37 Metatranscriptome 3300010900 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS5_55_TP1_12L Marine Biological Laboratory 3300010900 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933 -130.014 1044620 2400 41 3 257 4 0.0 Metatranscriptome 3300043284 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - FS5.Jul19.R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043284 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.5326 -110.7972 8-9 38906931 73675 21 1 116 1 SRX10112323 Unrestricted 52.24 Metatranscriptome 3300042578 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Metatranscriptome of feshwater microbial communities from Georgia, USA - middleoconee_2019_sw_WHONDRS-S19S_0011 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042578 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 33.9556 -83.4376 43807736 99168 40 992 2046 5444 Unrestricted 38.65 Metatranscriptome 3300036452 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of sediment microbial communities from Prado wetlands, California, USA - CSM_Prado_Oct18_AM1_1.5z2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036452 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 159827948 326976 22 257 227 1170 SRX8771260 Unrestricted 25.66 Metatranscriptome 3300059508 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 53R_CD_T2_R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059508 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 361875548 893866 434 280 1522 1729 Unrestricted 41.96 Metatranscriptome 3300011074 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 40 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011074 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 92811617 205769 174 693 15716 2560 Unrestricted 0.0 Metatranscriptome 3300038174 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_N3_C1_D1_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038174 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 47396245 89876 659 2176 8277 5518 SRX9390863 Unrestricted 85.65 Metatranscriptome 3300018670 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_039 - TARA_N000000051 (ERX1782175-ERR1712065) Canada's Michael Smith Genome Sciences Centre 3300018670 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 18.5745 66.4895 99102899 246184 84 112 258 505 0.0 Metatranscriptome 3300018571 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_146 - TARA_N000003240 (ERX1789502-ERR1719425) Canada's Michael Smith Genome Sciences Centre 3300018571 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 34.7631 -71.2422 36622073 83959 0 21 0 78 0.0 Metatranscriptome 3300046179 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_3_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046179 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 54689765 103623 14 94 393 380 Restricted 221.26 Metatranscriptome 3300016780 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine host-associated eukaryotic communities from Indian Ocean in L1 medium with NH4Cl, 20 C, 32 psu salinity and 432 ?mol photons light - Erythrolobus madagascarensis CCMP 3276 (MMETSP1354) National Center for Genome Resources 3300016780 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Algae Unclassified Red algae Unclassified marine host-associated 43.6002 -23.1667 12980005 16706 4 11 3 1 SRX554249 0.0 Metatranscriptome 3300018907 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX1399744-ERR1328122) Canada's Michael Smith Genome Sciences Centre 3300018907 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 36.139 -28.9598 160527789 683172 153 78 309 878 0.0 Metatranscriptome 3300000829 *Microbiome Permanent Draft Soil microbial communities from four geographically distinct crusts in the Colorado Plateau and Sonoran desert Soil microbial communities from Moab, Utah, sample - Soil Crust Prior wet up (biological replicate A) 0A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300000829 Metatranscriptome Analysis No Yes elbrodie@lbl.gov, ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Desert Soil Unclassified Soil 38.714694 -109.692944 159597644 529556 100 297 500 952 SRX3311665 Unrestricted 0.0 Metatranscriptome 3300031206 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_D6_16mM_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031206 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 22874790 33829 0 0 3 4 SRX6408187 Unrestricted 62.83 Metatranscriptome 3300037645 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_N3_C1_D1_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037645 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 60817910 117323 246 1585 1919 4123 SRX9385011 Unrestricted 184.35 Metatranscriptome 3300024480 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepC_0h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024480 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 153353278 331751 57 122 607 932 SRX4547599 Unrestricted 19.64 Metatranscriptome 3300008811 *Microbiome Permanent Draft Microbial communities from dairy cow rumen, for metatranscriptome studies Microbial communities from dairy cow rumen, for metatranscriptome studies - 2155_rapeseed oil diet Aarhus University 3300008811 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Stomach Digestive system Rumen Holstein breed cow rumen 24530930 116671 567 64 6403 224 SRX196213 0.0 Metatranscriptome 3300003676 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Estuarine microbial communities from Elkhorn Slough, Monterey Bay, California, USA - MR2B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003676 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes jackson.z.lee@nasa.gov, jim.fredrickson@pnnl.gov; jackson.z.lee@nasa.gov Jackson Lee, Jim Fredrickson; Jackson Lee No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 36.812947 -121.784692 17950540 38289 57 254 481 1128 Unrestricted 0.0 Metatranscriptome 3300036558 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of sediment microbial communities from Prado wetlands, California, USA - CSM_Prado_Oct18_PM1_1.5z2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036558 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 79260228 169879 11 48 125 345 SRX8742662 Unrestricted 41.27 Metatranscriptome 3300050700 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae axenic culture microbial communities from LLNL, Livermore, California, USA - f25_d5_W_S40 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050700 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 20545512 22711 6 0 10 2 Restricted 205.37 Metatranscriptome 3300061806 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 86_controlsoil_3_T21 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061806 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 26880460 67191 74 55 664 453 Unrestricted 285.47 Metatranscriptome 3300017376 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine algae-associated eukaryotic communities from Gulf of Mexico in f/2 medium with seawater, 25 C, 36 psu salinity and 270 ?mol photons light - Karenia brevis Wilson (MMETSP0201) National Center for Genome Resources 3300017376 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Algae Unclassified Unclassified Unclassified marine algae-associated 101689527 146035 1 1 1 6 0.0 Metatranscriptome 3300017297 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in L1 medium with seawater, 24 C, 33 psu salinity and 540 ?mol photons light - Vitrella brassicaformis CCMP 3346 (MMETSP1451) National Center for Genome Resources 3300017297 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -23.5 152.0 38040623 51230 15 3 23 1 0.0 Metatranscriptome 3300019127 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_039 - TARA_N000000014 (ERX1782135-ERR1712133) Canada's Michael Smith Genome Sciences Centre 3300019127 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 18.5584 66.4725 222894455 486528 0 17 23 150 0.0 Metatranscriptome 3300018753 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_110 - TARA_N000001764 (ERX1789594-ERR1719358) Canada's Michael Smith Genome Sciences Centre 3300018753 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -1.8155 -84.629 143638387 361089 3 71 9 323 0.0 Metatranscriptome 3300021847 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States - R1070 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021847 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 46.232 -123.89 86102723 176676 200 620 1027 6540 SRX4015408 Unrestricted 0.0 Metatranscriptome 3300017172 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 23 C, 0 psu salinity and 284 ?mol photons light - Proteomonas sulcata CCMP 704 (MMETSP1049) National Center for Genome Resources 3300017172 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 35781073 49189 11 10 31 10 0.0 Metatranscriptome 3300046271 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_4_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046271 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 29717521 56690 1 1 20 2 Restricted 183.4 Metatranscriptome 3300008896 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of annulated tree boas from Steinhart Aquarium in San Francisco, USA - CAS05_GI University of California, San Francisco 3300008896 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Unclassified Digestive system Unclassified GI 329397 1199 0 0 0 0 SRX170639 0.0 Metatranscriptome 3300036123 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of sediment microbial communities from Prado wetlands, California, USA - CSM_Prado_Oct18_AM1_0.5z2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036123 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 139491653 273488 135 485 1116 1995 SRX8771083 Unrestricted 23.44 Metatranscriptome 3300035383 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Metatranscriptome of Boechera depauperate grown with Bradyrhizobium sp. W and Methylocaldum sp. 0917 mixed culture communities from SDSU, California, USA - Exp#4 BR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035383 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Host-associated Plants Unclassified Phyllosphere Unclassified plant growth chamber 32.7717 -117.0735 29868511 40631 4 0 23 1 SRX8295088 Unrestricted 526.55 Metatranscriptome 3300004469 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 16 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004469 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 97150718 325543 6259 1924 20123 3817 Unrestricted 0.0 Metatranscriptome 3300009729 *Microbiome Permanent Draft Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling - T10-HLNH4 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009729 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes milachis@u.washington.edu Ludmila Chistoserdova No Engineered Modeled Plant nodule Simulated communities (microbial mixture) Unclassified Methane-oxidizing 47.6193 -122.2449 55071742 93016 2 0 469 6 SRX2525438 Unrestricted 0.0 Metatranscriptome 3300040783 *Microbiome Finished Lab enriched marine microbial communities from the Bohai Gulf, China Lab enriched marine microbial communities from the Bohai Gulf, China - ORI Hebei Normal University of Science &Technology 3300040783 Metatranscriptome Analysis Trinity v. 2.4.0 released by Si Li No Yes jackeikee@aliyun.com Si Li No Environmental Aquatic Gulf Marine Unclassified Marine 38.26 118.24 477618132 1283980 289 689 786 2476 0.0 Metatranscriptome 3300049512 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P34SSC2_191111_c (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300049512 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 58388895 136649 112 244 1080 1449 SRX20650983, SRX20650982 Unrestricted 0.0 Metatranscriptome 3300009917 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 7, 8m depth; RNA IDBA-UD Marine Biological Laboratory 3300009917 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 6.58 29885096 79549 1528 129 5889 397 0.0 Metatranscriptome 3300000657 *Microbiome Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Thermokarst Bog cDNA B4 Metatranscriptome DOE Joint Genome Institute (JGI) 3300000657 Metatranscriptome Analysis No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 0 0 0 0 0 0 0.0 Metatranscriptome 3300046432 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_31_Control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046432 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1607 -81.362 8806052 19430 68 138 586 660 Unrestricted 58.52 Metatranscriptome 3300004510 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 69_HOW9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004510 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 10995804 22659 360 69 1051 292 SRX2780162 Unrestricted 0.0 Metatranscriptome 3300004611 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004611 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 120179377 389812 6160 4019 22809 8928 Unrestricted 0.0 Metatranscriptome 3300035369 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Metatranscriptome of Bradyrhizobium sp. W and Methylocaldum sp. 0917 mixed culture communities from SDSU, California, USA - Exp#3 BR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035369 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Engineered Lab culture Bacteria Culture media Unclassified defined medium 32.7717 -117.0735 20027913 26750 1 0 15 2 SRX8294571 Unrestricted 411.46 Metatranscriptome 3300011107 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300011107 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil 45.54 -73.72 410688746 1043983 0 0 91 1 SRX2522014, SRX2522015 Unrestricted 0.0 Metatranscriptome 3300018782 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_052 - TARA_N000000570 (ERX1782313-ERR1712019) Canada's Michael Smith Genome Sciences Centre 3300018782 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -16.9616 53.9541 147130934 386785 143 32 581 647 0.0 Metatranscriptome 3300004558 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 76 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004558 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 60529445 204453 2460 1734 9684 3665 Unrestricted 0.0 Metatranscriptome 3300024853 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepC_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024853 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 172523441 368263 58 110 644 837 SRX4547630 Unrestricted 25.72 Metatranscriptome 3300004483 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 86_LOW11 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004483 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 12764520 27352 264 103 1275 388 SRX4923660 Unrestricted 0.0 Metatranscriptome 3300034669 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034669 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 307696835 734707 183 983 4038 4367 SRX7520245 Unrestricted 20.42 Metatranscriptome 3300037623 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_M1_C1_D4_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037623 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 79181554 160175 434 1283 4717 3907 SRX9383118 Unrestricted 117.09 Metatranscriptome 3300022385 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States - S771 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022385 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.178 -123.853 207359698 519439 189 740 4671 2547 SRX4019723 Unrestricted 0.0 Metatranscriptome 3300019258 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Metatranscriptome of peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin05_10_metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019258 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 262682678 603315 260 369 4950 1939 SRX3886997 Unrestricted 0.0 Metatranscriptome 3300021886 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-7 (Metagenome Metatranscriptome) (Annotation) DOE Joint Genome Institute (JGI) 3300021886 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 18.7998 -20.70285 68906952 148880 60 56 125 196 SRX5724273 Unrestricted 0.0 Metatranscriptome 3300041563 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_442 MetaT AgResearch, New Zealand, Mosgeil 3300041563 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 37216790 82832 458 95 3146 178 0.0 Metatranscriptome 3300034652 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Metatranscriptome of peat soil microbial communities from wetland fen in Alaska, United States - Frozen_pond_02R_16 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034652 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes swr38@rutgers.edu; barkay@aesop.rutgers.edu Spencer W. Roth; Tamar Barkay No Environmental Terrestrial Wetlands Soil Unclassified peat soil 64.9142 -147.835 378164341 773829 148 71 1040 454 SRX7525246 Unrestricted 33.74 Metatranscriptome 3300019210 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA - AD_UKC030_MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019210 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 40.3 -88.15 130986312 288859 67 219 6526 1122 SRX3903276 Unrestricted 0.0 Metatranscriptome 3300035352 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0819U20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035352 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.039 76161786 158419 247 351 6879 1062 SRX8237470 Unrestricted 36.7 Metatranscriptome 3300040752 *Microbiome Finished Lab enriched marine microbial communities from the Bohai Gulf, China Lab enriched marine microbial communities from the Bohai Gulf, China - ANL Hebei Normal University of Science &Technology 3300040752 Metatranscriptome Analysis Trinity v. 2.4.0 released by Si Li No Yes jackeikee@aliyun.com Si Li No Environmental Aquatic Gulf Marine Unclassified Marine 38.26 118.24 116047084 286334 40 212 125 721 0.0 Metatranscriptome 3300005505 *Microbiome Permanent Draft Soil microbial communities from four geographically distinct crusts in the Colorado Plateau and Sonoran desert Soil microbial communities from Colorado Plateau and Sonoran desert - Soil Crust after wet up 5A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005505 Metatranscriptome Analysis megahit v. 0.2.0 No Yes elbrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Desert Soil Unclassified Soil 38.42 -109.4099 409913691 1213434 451 872 1803 4091 SRX2553490 Unrestricted 0.0 Metatranscriptome 3300052885 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 37-S49Day63 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052885 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 214977296 430976 59 14 166 73 Unrestricted 49.72 Metatranscriptome 3300019044 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_038 - TARA_N000000041 (ERX1789478-ERR1719328) Canada's Michael Smith Genome Sciences Centre 3300019044 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 19.0235 64.5256 709898639 2486654 5 58 42 549 0.0 Metatranscriptome 3300032427 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day5_9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032427 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 37967397 65376 4 0 24 2 SRX6857173 Unrestricted 213.94 Metatranscriptome 3300003613 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA Grassland soil microbial communities from Hopland, California, USA - Sample H2_Rhizo_31 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003613 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes pettridge2@llnl.gov, nuccio1@llnl.gov; pettridge2@llnl.gov Jennifer Pett-Ridge, Erin Nuccio; Jennifer Pett-Ridge No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.972988 -123.116539 18609526 53388 149 126 729 1177 SRX2563589 Unrestricted 0.0 Metatranscriptome 3300017313 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, low P, at 15 C, 32 psu salinity and 235 ?mol photons light - Prymnesium polylepis CCMP 1757 (MMETSP0146) National Center for Genome Resources 3300017313 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 37986692 58474 1 1 2 2 0.0 Metatranscriptome 3300003694 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_165m_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003694 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 3233183 8163 99 19 337 111 SRX1878042 Unrestricted 0.0 Metatranscriptome 3300059668 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_8 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059668 Metatranscriptome Analysis megahit v. 2021-11-04 03:21:36 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 67418771 154359 105 34 226 150 Unrestricted 0.0 Metatranscriptome 3300004956 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 43 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004956 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 32874714 117219 2483 846 9062 2108 Unrestricted 0.0 Metatranscriptome 3300046214 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_2_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046214 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 58933300 89605 1 0 16 2 Restricted 125.81 Metatranscriptome 3300028180 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0742-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028180 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 204496456 363525 34 74 24 78 SRX5254096 Unrestricted 85.62 Metatranscriptome 3300046040 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-67 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046040 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4205 -64.1498 66452659 157635 747 41 1155 682 Unrestricted 19.98 Metatranscriptome 3300013072 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - RNA 5th pass 30_C Kraft MG (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013072 Metatranscriptome Analysis megahit v. 1.0.6 No Yes jmgladden@lbl.gov John Gladden No Environmental, Engineered Terrestrial, Solid waste Composting Soil, Mixed feedstock Commercial compost compost 37.83 -122.29 66749981 138618 5 36 113 168 SRX4809062 Unrestricted 0.0 Metatranscriptome 3300046293 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_5_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046293 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 41939524 77782 3 0 19 0 Restricted 385.57 Metatranscriptome 3300018767 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_041 - TARA_N000000075 (ERX1782420-ERR1711944) Canada's Michael Smith Genome Sciences Centre 3300018767 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 14.5644 70.0096 166009058 392869 20 40 108 743 0.0 Metatranscriptome 3300031710 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean - PS103-2.R3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031710 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified marine -49.0129 2.8377 1188912943 2240895 24 10 28 153 SRX5356505 Unrestricted 10.34 Metatranscriptome 3300008356 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy - t0.CR.RNAseq.exp2 University of Naples 3300008356 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Cheese 612928 1623 2 0 47 15 0.0 Metatranscriptome 3300041282 *Microbiome Permanent Draft Diffuse flow microbial communities from hydrothermal vent near Loihi Seamount, Hawaii, USA Diffuse flow microbial communities from hydrothermal vent near Loihi Seamount, Hawaii, USA - MH3012C10 Marine Biological Laboratory 3300041282 Metatranscriptome Analysis IDBA-UD v. 1.1.3 released by JGI data releasing policy No Yes asmith@simons-rock.edu Amy Smith No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse Flow 19.42 -155.28 1545725 2259 0 0 0 0 0.0 Metatranscriptome 3300031072 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031072 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 26041547 55063 55 54 71 321 SRX5794323 Unrestricted 36.43 Metatranscriptome 3300041557 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_34 MetaT AgResearch, New Zealand, Mosgeil 3300041557 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 53254043 121343 329 98 1946 179 0.0 Metatranscriptome 3300018854 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_041 - TARA_N000000076 (ERX1789602-ERR1719346) Canada's Michael Smith Genome Sciences Centre 3300018854 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 14.6067 69.9775 215884455 514734 13 69 9 568 0.0 Metatranscriptome 3300008423 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy - t20.CO.RNAseq.exp1 University of Naples 3300008423 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Cheese 21702 77 11 0 46 0 0.0 Metatranscriptome 3300026386 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0907-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026386 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 18166342 35083 8 15 79 50 SRX4664277 Unrestricted 81.95 Metatranscriptome 3300017335 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from York River, Chesapeake Bay in f/2 medium with natural seawater and antibiotics, no silicate, 22 C, 21 psu salinity and 269 ?mol photons light - Kryptoperidinium foliaceum CCAP 1116/3 (MMETSP0119_2) National Center for Genome Resources 3300017335 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 64523665 106559 68 8 134 30 0.0 Metatranscriptome 3300046597 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - S2-R2-A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046597 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3571 19.051 29881119 74857 23 30 101 78 Unrestricted 116.41 Metatranscriptome 3300026422 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Colum_RepA_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026422 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 79628110 157425 127 115 588 654 SRX4547810 Unrestricted 19.65 Metatranscriptome 3300024867 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepA_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024867 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 253579331 537427 83 141 915 1840 SRX4547691 Unrestricted 17.28 Metatranscriptome 3300041675 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_273 MetaT AgResearch, New Zealand, Mosgeil 3300041675 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 34684937 80194 339 76 1848 162 0.0 Metatranscriptome 3300047430 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81958090-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047430 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 274304771 686962 358 259 1722 1592 Unrestricted 26.1 Metatranscriptome 3300016928 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater and 14nM iron, 19 C, 35 psu salinity and 610 ?mol photons light - Thalassiosira weissflogii CCMP 1010 (MMETSP1415) National Center for Genome Resources 3300016928 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.0 -65.0 29324371 31200 2 1 2 1 0.0 Metatranscriptome 3300023305 *Microbiome Permanent Draft Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Soil microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B2.stno.R1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300023305 Metatranscriptome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes colemanderr@gmail.com Devin Coleman-Derr No Environmental Terrestrial Unclassified Soil Agricultural land field soil 36.3390586 -120.12031 11720513 24820 100 1045 997 2632 0.0 Metatranscriptome 3300017238 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in Brackish water medium, at 19 C, 5 psu salinity and 389 ?mol photons light - Pseudokeronopsis sp. Brazil (MMETSP1396) National Center for Genome Resources 3300017238 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 28984345 61181 16 18 35 22 0.0 Metatranscriptome 3300023658 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Soil microbial communities from Bohemian Forest, Czech Republic - CSA3 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023658 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 49.0431 13.617 9571711 21249 65 56 1839 531 SRX4081048, SRX5229541 Unrestricted 0.0 Metatranscriptome 3300008791 *Microbiome Permanent Draft Microbial communities from seawater in eastern North Pacific Ocean Microbial communities from seawater in eastern North Pacific Ocean - P1 free-living McLane University of Georgia 3300008791 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ocean water 116013613 344695 30 11 351 447 0.0 Metatranscriptome 3300032146 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CBN3_Tmax_316 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032146 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 80.9595 -132.1842 209890477 439993 141 53 714 1294 SRX6422217 Unrestricted 23.02 Metatranscriptome 3300049111 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 71 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049111 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.8286 -82.5011 23795065 44593 47 51 111 240 Restricted 62.02 Metatranscriptome 3300004798 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004798 Metatranscriptome Analysis megahit v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Unclassified Roots Unclassified Switchgrass rhizosphere and bulk soil 42.3912 -85.383786 593278329 1898302 1545 16718 5100 44746 SRX2705252 Unrestricted 0.0 Metatranscriptome 3300002862 *Microbiome Permanent Draft Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA Arctic peat soil microbial communities from Barrow, Alaska - Barrow Graham LP Incubations RNA 2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002862 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes janet.jansson@pnnl.gov Janet Jansson No Environmental Terrestrial Wetlands Soil Peat Arctic peat soil 71.28381 -156.5985 3552542 10005 8 17 567 144 SRX2554385 Unrestricted 0.0 Metatranscriptome 3300055236 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP12.1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055236 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 45624560 87673 20 27 104 175 Unrestricted 78.78 Metatranscriptome 3300016839 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Indian Ocean in L1 medium with seawater, 20 C, 33 psu salinity and 576 ?mol photons light - Pycnococcus provasolii RCC 733 (MMETSP1471) National Center for Genome Resources 3300016839 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -35.05 23.73333 8878392 12727 109 14 240 23 0.0 Metatranscriptome 3300012525 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012525 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 37.0306 -76.0464 573078223 1239460 461 506 15728 10789 SRX3007454 Unrestricted 0.0 Metatranscriptome 3300061833 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 59_sorghum_3_T5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061833 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 71039927 184883 166 130 1016 888 Unrestricted 90.65 Metatranscriptome 3300047464 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81957578-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047464 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 144992806 363137 373 280 1747 1492 Unrestricted 56.02 Metatranscriptome 3300048679 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Metatranscriptome of soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR11 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048679 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.3476 -119.2808 78441747 138047 37 1 68 18 Unrestricted 22.62 Metatranscriptome 3300008874 *Microbiome Permanent Draft Microbial communities of Wadden Sea tidal flat in Germany Microbial communities of Wadden Sea tidal flat in Germany - 1250 highTide Bielefeld University 3300008874 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Tidal flat 53.73 7.67 3522341 11856 35 22 659 253 0.0 Metatranscriptome 2049941003 *Microbiome Permanent Draft Hydrothermal vent microbial communities from Guaymas and Carmen Basins, Gulf of California Hydrothermal vent microbial communities from Guaymas and Carmen Basins, Gulf of California, Sample 420 Pennsylvania State University 2049941003 Metatranscriptome Analysis MIRA 3 released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent 27.823 -111.4 50490754 128992 100 0 140 0 0.0 Metatranscriptome 3300041738 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_400 MetaT AgResearch, New Zealand, Mosgeil 3300041738 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 50880073 107901 243 65 2108 194 0.0 Metatranscriptome 3300028420 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.641 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028420 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.27 -123.946 923798087 2189243 43 276 233 526 SRX4821927 Unrestricted 0.0 Metatranscriptome 3300008990 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier in Georgia, USA Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT3 Georgia Institute of Technology 3300008990 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Lake Lanier in Georgia, USA 21831334 87302 186 52 1888 673 0.0 Metatranscriptome 3300018593 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_052 - TARA_N000000600 (ERX1782171-ERR1712017) Canada's Michael Smith Genome Sciences Centre 3300018593 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -16.9534 53.9601 42895406 107518 93 12 406 323 0.0 Metatranscriptome 3300051244 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Sankt Oswald-Riedlhutte, Bavaria, Germany - BW_CL_001R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051244 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.929961 13.426252 58652186 156518 291 277 1396 1219 Unrestricted 122.16 Metatranscriptome 3300008445 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy - t30.CO.B.RNAseq.exp2 University of Naples 3300008445 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Cheese 2081781 3893 2 0 52 4 0.0 Metatranscriptome 3300030925 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome) (pilot) DOE Joint Genome Institute (JGI) 3300030925 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Unclassified Phyllosphere Unclassified phyllosphere 42.39 -85.37 15887216 35244 38 55 66 266 SRX7077710, SRX7077709 Unrestricted 0.0 Metatranscriptome 3300018514 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_136 - TARA_N000002967 (ERX1782463-ERR1711889) Canada's Michael Smith Genome Sciences Centre 3300018514 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 17.0769 -118.8962 8712027 17550 1 0 3 32 0.0 Metatranscriptome 3300036290 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen9, Rep 2, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036290 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 21135757 22631 7 0 21 14 SRX8381530, SRX8381529 Unrestricted 0.0 Metatranscriptome 3300043287 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - FS5.Jul19.R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043287 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.5326 -110.7972 8-9 64779972 135383 48 0 491 1 SRX10112835 Unrestricted 37.83 Metatranscriptome 3300041713 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_60 MetaT AgResearch, New Zealand, Mosgeil 3300041713 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 8911709 20091 188 62 1177 101 0.0 Metatranscriptome 3300012386 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_24_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012386 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 139646847 331302 103 683 9489 5975 Unrestricted 0.0 Metatranscriptome 3300004795 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004795 Metatranscriptome Analysis megahit v. 0.2.0 No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 615583224 1753248 3077 2027 9313 9750 SRX2518347 Unrestricted 0.0 Metatranscriptome 3300032891 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_15MAY2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032891 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.3757 21971387 39343 10 9 27 41 SRX7519157 Unrestricted 47.68 Metatranscriptome 3300061818 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 27_controlsoil_1_T0 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061818 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 107480474 285738 141 197 1168 1164 Unrestricted 100.67 Metatranscriptome 3300048521 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_6_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048521 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 47808606 83277 1 0 19 0 Restricted 135.89 Metatranscriptome 3300008542 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.6.4OB.15dpc CCME-COLORADO 3300008542 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 6828558 27300 48 1 547 14 0.0 Metatranscriptome 3300048947 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 24 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048947 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 42.2817 -81.6717 11892800 24887 16 1 52 28 Restricted 35.55 Metatranscriptome 3300035341 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0608S12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035341 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8959 -97.0388 28484283 51004 211 312 6513 929 SRX8237120 Unrestricted 44.0 Metatranscriptome 3300017002 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in Minimal Essential Medium with 10% fetal bovine serum, 23 C, 35 psu salinity and 567 ?mol photons light - unclassified eukaryote NY070348D (MMETSP1433) National Center for Genome Resources 3300017002 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 40.49657 -74.17591 27061298 25806 1 16 2 26 0.0 Metatranscriptome 3300016925 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in ASW medium w/o nitrate, at 20 C, 30 psu salinity and 582 ?mol photons light - Tryblionella compressa CCMP 561 (MMETSP0746) National Center for Genome Resources 3300016925 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 24170798 30886 13 11 19 13 0.0 Metatranscriptome 3300017235 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in ESM medium, 20 C, 35 psu salinity and 678 ?mol photons light - Lotharella globosa CCCM 811 (MMETSP0111_2) National Center for Genome Resources 3300017235 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 13.4 144.7 29133311 38385 22 12 35 17 0.0 Metatranscriptome 3300006848 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1500(2)_T MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300006848 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 123066734 352940 95 5 448 21 SRX2521521 Unrestricted 0.0 Metatranscriptome 3300046576 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-56 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046576 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.433 -64.1161 137658614 321034 1051 39 1714 575 Unrestricted 14.42 Metatranscriptome 3300021932 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean - 30m ANT-15 Euk ARK-20-1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021932 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine -17.283 2.9768 123580668 239894 62 50 98 165 SRX3337264 Unrestricted 0.0 Metatranscriptome 3300041426 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass leaf microbial community from Lincoln, Canterbury, New Zealand - RGL17_4 MetaT AgResearch, New Zealand, Mosgeil 3300041426 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 13131016 21633 66 61 191 125 0.0 Metatranscriptome 3300028336 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 42R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028336 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 174527656 273312 35 5 74 125 SRX5112358 Unrestricted 32.03 Metatranscriptome 3300037746 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of photosynthetic mat microbial communities from Octopus Spring, YNP, Wyoming, United States - 20090728 1600 sample t1cd (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037746 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 136632948 339165 0 0 70 2 SRX9381227 Unrestricted 158.84 Metatranscriptome 3300017294 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from estuary of Serchio River (Pisa) in autoclaved artificial seawater diluted with distilled water, 19 C, 5 psu salinity and 593 ?mol photons light - Euplotes harpa FSP1.4 (MMETSP0213) National Center for Genome Resources 3300017294 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Estuary marine 43.47 10.16 23571136 50790 1 2 1 3 0.0 Metatranscriptome 3300037031 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp01_R22 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037031 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 438481191 882047 440 74 896 1039 SRX8835391 Unrestricted 49.55 Metatranscriptome 3300047588 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_7_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047588 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 14522391 28671 1 0 19 1 Restricted 360.73 Metatranscriptome 3300030928 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T26 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030928 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 20099886 40800 142 119 207 558 SRX5794470 Unrestricted 37.8 Metatranscriptome 3300003329 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-3-R (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003329 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 107110060 189728 7 7 36 25 SRX2557345 Unrestricted 0.0 Metatranscriptome 3300017213 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in GSe medium with ammonium, 15 C, 32 psu salinity and 351 ?mol photons light - Pelagococcus subviridis CCMP 1429 (MMETSP0885) National Center for Genome Resources 3300017213 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 49.9166 -145.1166 26741787 36819 1 1 3 1 0.0 Metatranscriptome 3300012528 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012528 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 37.0306 -76.0464 611672156 1338689 167 396 7426 9717 SRX3007444 Unrestricted 0.0 Metatranscriptome 3300002884 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI074_100m_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002884 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 40661281 100415 66 52 478 828 Unrestricted 0.0 Metatranscriptome 3300023700 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023700 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 114343059 229524 886 1785 17371 10942 SRX4480123 Unrestricted 47.26 Metatranscriptome 3300018904 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_067 - TARA_N000000742 (ERX1789433-ERR1719416) Canada's Michael Smith Genome Sciences Centre 3300018904 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -32.12 17.6987 234077066 672889 9 2 14 69 0.0 Metatranscriptome 3300043246 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Metatranscriptome of coal bed microbial communities from the Powder River Basin, Montana, United States - T6FGPRNA (Metagenome Metatranscriptome) (FastSelect) (version 2) DOE Joint Genome Institute (JGI) 3300043246 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Aquatic Groundwater Deep subsurface Coalbed methane well water coal bed water 45.435 -106.392 81393298 163017 6 8 106 27 Unrestricted 0.0 Metatranscriptome 3300030839 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil TCEFB (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030839 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dcullen@wisc.edu; francis.martin@inrae.fr Daniel Cullen; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 46.9233 -110.871944 468416693 1244402 5309 712 7946 1531 SRX3342747 Unrestricted 0.0 Metatranscriptome 3300041735 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_34 MetaT AgResearch, New Zealand, Mosgeil 3300041735 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 37867623 81642 258 109 1487 281 0.0 Metatranscriptome 3300011077 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 57 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011077 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 96105929 210435 167 334 14680 2061 Unrestricted 0.0 Metatranscriptome 3300004961 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 83 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004961 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 43020693 150864 1476 820 5227 1903 Unrestricted 0.0 Metatranscriptome 3300002592 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS903_55_12H 3300002592 Metatranscriptome Analysis released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 1766482 6142 100 2 38 4 0.0 Metatranscriptome 3300042536 *Microbiome Permanent Draft Sediment microbial communities from various environments and locations in Europe Metatranscriptome of sediment microbial communities from Baltic Sea, Sweden - H3D5S (Metagenome Metatranscriptome) (IMG v5.0) DOE Joint Genome Institute (JGI) 3300042536 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes o.eyice@qmul.ac.uk Ozge Eyice No Environmental Aquatic Sediment Marine Unclassified Sediment 58.8444 17.795 384893170 809366 31 43 886 261 SRX20998532 Unrestricted 12.1 Metatranscriptome 3300042019 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Metatranscriptome of estuary water microbial communities from Narragansett Bay, Rhode Island, USA - E1_negO2CPB (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042019 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.9078 -71.5683 356213116 705369 180 87 454 440 SRX14873773 Unrestricted 34.56 Metatranscriptome 3300038292 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_OW2_C1_D3_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038292 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 29009223 56142 630 1028 10920 2969 SRX9391585 Unrestricted 159.12 Metatranscriptome 3300009914 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 6, 8m depth; RNA IDBA-UD Marine Biological Laboratory 3300009914 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 6.56 7811844 24710 1035 66 5819 355 0.0 Metatranscriptome 3300046622 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-132 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046622 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4508 -64.215 80424372 190742 795 36 1368 460 Unrestricted 16.14 Metatranscriptome 3300026525 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Metatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_06 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026525 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen 49.6935 -112.8418 586197785 1017587 5 17 59 107 SRX4804159, SRX7705824 Unrestricted 0.0 Metatranscriptome 3300016943 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium, 13 C, 21 psu salinity and 100 ?mol photons light - Pseudo-nitzschia pungens cf. cingulata (MMETSP1060) National Center for Genome Resources 3300016943 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 47.6901 -122.40041 31921501 31691 25 1 54 3 0.0 Metatranscriptome 3300032698 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_31MAY2016_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032698 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Unclassified Phyllosphere Unclassified phyllosphere 42.39 -85.37 155127062 271920 35 25 39 177 SRX7077520 Unrestricted 134.16 Metatranscriptome 3300019086 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_048 - TARA_N000000115 (ERX1782260-ERR1712221) Canada's Michael Smith Genome Sciences Centre 3300019086 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -9.4153 66.303 36067500 82264 0 12 14 83 0.0 Metatranscriptome 3300018889 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_068 - TARA_N000000728 (ERX1789501-ERR1719269) Canada's Michael Smith Genome Sciences Centre 3300018889 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -31.027 4.6802 259626746 580783 2 9 14 106 0.0 Metatranscriptome 3300007615 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S14 DCM2_A metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007615 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 147792302 468024 638 2094 2012 7521 SRX3787153 Unrestricted 0.0 Metatranscriptome 3300021844 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.595 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021844 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.27 -123.946 43591454 91997 429 1496 7859 9014 SRX4018161 Unrestricted 0.0 Metatranscriptome 3300008606 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.1ob.16.15dpc CCME-COLORADO 3300008606 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 6635126 24795 42 1 506 10 0.0 Metatranscriptome 3300059665 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_5 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059665 Metatranscriptome Analysis megahit v. 2021-11-04 03:00:37 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 67919510 164743 123 22 317 167 Unrestricted 0.0 Metatranscriptome 3300019047 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX1399746-ERR1328125) Canada's Michael Smith Genome Sciences Centre 3300019047 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 36.139 -28.9598 545413054 2495920 256 116 658 1335 0.0 Metatranscriptome 3300017338 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Baffin Bay in L1 medium with seawater, 2 C, 33 psu salinity and 548 ?mol photons light - Heterocapsa arctica CCMP 445 (MMETSP1441) National Center for Genome Resources 3300017338 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 76.25 82.55 43386665 64900 0 2 0 3 0.0 Metatranscriptome 3300036368 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0608U48 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036368 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8973 -97.0409 24879083 54472 74 98 1948 352 SRX8237151 Unrestricted 111.84 Metatranscriptome 3300003703 *Microbiome Permanent Draft Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, for analyzing deforestation at different spatial scales Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A001 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003703 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes nusslein@microbio.umass.edu Nusslein, Klaus, Klaus Nusslein No Environmental Terrestrial Tropical forest Soil Unclassified Tropical rainforest soil -10.0 -62.0 3743723 8074 339 444 2436 1057 SRX5329106 Unrestricted 0.0 Metatranscriptome 3300018863 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_052 - TARA_N000000581 (ERX1789689-ERR1719283) Canada's Michael Smith Genome Sciences Centre 3300018863 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -16.9567 53.9809 224673872 529537 5 56 3 262 0.0 Metatranscriptome 3300006727 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP0619 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006727 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -28.65 -11.81 87815375 279069 5417 3148 11063 10729 SRX3299121 Unrestricted 0.0 Metatranscriptome 3300031501 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031501 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7416 -117.7042 27724372 55519 64 33 122 192 SRX5793958, SRX5793959 Unrestricted 0.0 Metatranscriptome 3300054636 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_CL_033R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300054636 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0689 10.4302 183465483 471172 707 660 3151 3033 Unrestricted 52.15 Metatranscriptome 3300033532 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_18SEP2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300033532 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.3757 287510785 523630 202 167 364 911 SRX7706897 Unrestricted 30.17 Metatranscriptome 3300052339 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of lake water microbial communities from Sandhills, Nebraska, United States - NSL_Border_2019 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052339 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@dbi.udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.79185 -102.53404 67632525 152609 28 54 556 144 Unrestricted 510.31 Metatranscriptome 3300008633 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Sea floor sediment microbial communities from Gulf of Mexico Methane Seep MPC10T Shell Corporation 3300008633 Metatranscriptome Analysis Trinity Released on PI's request No Yes ebalsop@lbl.gov, nicolas.tsesmetzis@shell.com Eric Alsop, Nicolas Tsesmetzis No Environmental Aquatic Cold seeps Marine Sediment Sediment 27.4 -93.2 129385404 609295 92 553 5295 592 0.0 Metatranscriptome 3300018764 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_076 - TARA_N000000868 (ERX1782470-ERR1712186) Canada's Michael Smith Genome Sciences Centre 3300018764 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -21.092 -35.417 142050486 392667 111 65 465 1045 0.0 Metatranscriptome 3300045471 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P35SSC1_191108_f (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300045471 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 73509535 181308 72 202 1490 991 SRX20650985 Unrestricted 132.71 Metatranscriptome 3300046217 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_4_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046217 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 62512453 111941 2 0 34 0 Restricted 144.48 Metatranscriptome 3300003697 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA - aqueous naphthalene treatment rep 3 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003697 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.099444 -73.604444 19815650 62620 11 218 256 1429 SRX2552965, SRX2552966 Unrestricted 0.0 Metatranscriptome 3300017276 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Northern Baffin Bay in L1 medium with seawater and antibiotics, 6 C, 36 psu salinity and 179 ?mol photons light - unclassified eukaryote CCMP 2098 (MMETSP0991) National Center for Genome Resources 3300017276 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 76.285 -73.0575 64404795 85517 10 7 10 20 0.0 Metatranscriptome 3300059573 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_25 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300059573 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 187870529 314253 281 44 830 291 Unrestricted 78.34 Metatranscriptome 3300032424 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day7_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032424 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 33291649 59223 14 0 31 8 SRX6857448 Unrestricted 147.52 Metatranscriptome 3300018730 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_084 - TARA_N000001438 (ERX1782285-ERR1712028) Canada's Michael Smith Genome Sciences Centre 3300018730 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -60.2287 -60.6476 149646591 343879 101 9 219 182 0.0 Metatranscriptome 3300037841 *Microbiome Permanent Draft Marine microbial community from California current samples near San Diego, USA - S1 Marine microbial communities from California current near San Diego, California - S1 Illumina 3300037841 Metatranscriptome Analysis Phrap v. 4.24 released by JGI data releasing policy No Yes ndu@ucsd.edu Niu Du No Environmental Aquatic Oceanic Marine Unclassified Marine 32.84617 -117.533 1503173220 2874502 2542 66 5220 388 0.0 Metatranscriptome 3300055303 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP5.2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055303 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 245433674 494112 14 37 136 205 Unrestricted 75.41 Metatranscriptome 3300019255 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019255 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 241974060 574054 542 1449 37906 12602 SRX3939789 Unrestricted 0.0 Metatranscriptome 3300024864 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepA_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024864 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 234247212 501399 86 126 979 1309 SRX4547693 Unrestricted 16.4 Metatranscriptome 3300010081 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_0_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010081 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 42381493 99923 51 422 21215 4383 Unrestricted 0.0 Metatranscriptome 3300046594 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - G2-R1-A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046594 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3569 19.0504 106946145 227812 123 80 329 264 Unrestricted 35.8 Metatranscriptome 3300052888 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 88-S41Day63 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052888 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 46321229 86522 12 2 33 21 Unrestricted 335.83 Metatranscriptome 3300003736 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_55_13L Marine Biological Laboratory 3300003736 Metatranscriptome Analysis CLC Genomics WB7 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 749601 2019 143 3 163 5 0.0 Metatranscriptome 3300009203 *Microbiome Permanent Draft Microbial communities of wastewater sludge from Singapore Microbial communities of wastewater sludge from Singapore - Sludge9_b2_February Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300009203 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified Wastewater sludge 1.2 103.45 298663318 1167327 6298 1165 46306 3986 SRX373541 0.0 Metatranscriptome 3300043792 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_191 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043792 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 88042244 205301 516 720 2975 4027 Unrestricted 62.69 Metatranscriptome 3300012772 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Simoncouche, Canada - S_130826_E_mt (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012772 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.2311 -71.2508 169902044 369740 648 312 6166 5300 SRX3015288 Unrestricted 0.0 Metatranscriptome 3300010123 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_8_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010123 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 78293820 184451 133 651 8093 5932 Unrestricted 0.0 Metatranscriptome 3300018857 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_111 - TARA_N000001828 (ERX1789640-ERR1719290) Canada's Michael Smith Genome Sciences Centre 3300018857 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -16.9741 -100.6683 231625536 521824 0 23 4 124 0.0 Metatranscriptome 3300028729 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Asp1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028729 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 63859094 125065 10 9 164 51 SRX5356124 Unrestricted 75.18 Metatranscriptome 3300041554 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_138 MetaT AgResearch, New Zealand, Mosgeil 3300041554 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 127766493 275258 552 101 3245 202 0.0 Metatranscriptome 3300004555 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004555 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 45684409 163845 4563 1599 15379 3668 Unrestricted 0.0 Metatranscriptome 3300031868 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLA1 metaT (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031868 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified Plant litter 49.043 13.6183 35703245 79767 67 411 759 2104 SRX3937011, SRX5229540 Unrestricted 0.0 Metatranscriptome 3300001245 *Microbiome Permanent Draft Estuarine microbial mat communities from Elkhorn Slough, Moss Landing, CA, that are H2-evolving and photosynthetic Estuarine microbial mat communities from Elkhorn Slough, Moss Landing, CA, USA - CR3B Metatranscriptome (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300001245 Metatranscriptome Analysis No Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer Yes 23190731 Environmental Aquatic Intertidal zone Marine Estuary Estuarine 36.8 -121.8 949145811 2180222 52 10 326 80 SRX3311454 Unrestricted 0.0 Metatranscriptome 3300021220 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from nest from French Guiana - FG16_9_6 mRNA SA University of Luxembourg 3300021220 Metatranscriptome Analysis CLC Genomics Workbench Version 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 5.06224 -53.047407 26277006 94383 1 0 2 1 0.0 Metatranscriptome 3300035602 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R1105S02 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035602 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0387 50558042 100941 517 1292 6010 4499 SRX8235710 Unrestricted 51.52 Metatranscriptome 3300028099 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 33R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028099 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 162155225 276331 61 7 105 201 SRX5172108 Unrestricted 34.48 Metatranscriptome 3300048051 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P15SSCI_191107_c (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048051 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 7746229 14971 45 136 739 642 SRX20650723 Unrestricted 281.01 Metatranscriptome 3300052435 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 8-S25Day7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052435 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 120002635 224144 40 5 104 68 Unrestricted 106.36 Metatranscriptome 3300005211 *Microbiome Permanent Draft Cyanobacterial communities from the Joint Genome Institute, California, USA Cyanobacterial communities from the Joint Genome Institute, California, USA - FECB-27 Light/N- metaT (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300005211 Metatranscriptome Analysis megahit v. 0.2.0 No Yes mhess@lbl.gov, mhess@ucdavis.edu Matthias Hess No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Cyanobacterial 37.9313884 -122.0239394 26990620 54219 35 12 105 19 Unrestricted 0.0 Metatranscriptome 3300018629 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS852_ls4 J. Craig Venter Institute (JCVI) 3300018629 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 55825606 186946 39 15 78 220 0.0 Metatranscriptome 3300008566 *Microbiome Permanent Draft Acid mine drainage (AMD) microbial communities from Richmond mine in California, USA Acid mine drainage (AMD) microbial communities of acidophilic biofilm from Richmond mine in California, USA - C10 GS0 University of California, Berkeley 3300008566 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes Yes 25361394 Environmental Aquatic Groundwater Freshwater Acid Mine Drainage Acid mine drainage 3573405 6379 352 0 436 12 SRX327876 0.0 Metatranscriptome 3300042575 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Metatranscriptome of estuarine water microbial communities from San Francisco Bay, California, United States - Jul19_FB_9_27D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042575 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 37.6183 -122.2916 20159214 44019 71 97 191 715 Unrestricted 39.63 Metatranscriptome 3300057222 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T1_3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300057222 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 132961170 202219 32 10 274 69 Unrestricted 0.0 Metatranscriptome 3300059505 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 24R_SD_T1_R4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059505 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 497506721 1216922 510 307 1862 1869 Unrestricted 32.59 Metatranscriptome 3300030780 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_S19_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030780 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 5.9 -41.25 626984276 2256259 1985 1095 2774 3538 SRX3342404 Unrestricted 0.0 Metatranscriptome 3300066318 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Metatranscriptome of seawater eukaryotic communities from East Sound, Orcas Island, WA, USA - ORCAS_euks_20210607_11_05 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300066318 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 37735569 87250 140 33 260 223 Unrestricted 58.76 Metatranscriptome 3300053660 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T1_4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053660 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 142532474 277845 84 54 351 196 Unrestricted 0.0 Metatranscriptome 3300028278 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0687-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028278 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 217002079 385410 25 89 19 107 SRX5253797 Unrestricted 76.68 Metatranscriptome 3300035587 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - 28F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035587 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4202 16.665 132053626 264670 234 273 3225 1084 SRX8209524 Unrestricted 55.34 Metatranscriptome 3300036148 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10NP15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036148 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 43778098 89751 683 1537 4386 5423 SRX8377978 Unrestricted 42.4 Metatranscriptome 3300030526 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE044SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030526 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2937 -71.1771 86122356 198149 32 42 947 461 SRX4391327, SRX4391326 Unrestricted 0.0 Metatranscriptome 3300031661 *Microbiome Permanent Draft Freshwater RNA viral communities from high-CO2 subsurface aquifer at Crystal Geyser, Utah, USA Metatranscriptome of freshwater viral communities from high-CO2 subsurface aquifer at Crystal Geyser, Utah, USA - CG05 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031661 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes nckyrpides@lbl.gov Nikos Kyrpides No Environmental Aquatic Groundwater Deep subsurface Unclassified subsurface water 38.9383 -110.1342 81367829 148968 65 64 402 266 SRX8128150 Unrestricted 0.0 Metatranscriptome 3300031560 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_6_6_60m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031560 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 103795653 206264 269 53 4113 264 SRX5338558 Unrestricted 46.44 Metatranscriptome 3300018517 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_131 - TARA_N000002366 (ERX1782329-ERR1712120) Canada's Michael Smith Genome Sciences Centre 3300018517 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 22.7478 -158.0513 14646571 27649 1 18 4 56 0.0 Metatranscriptome 3300002769 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS1_TP2_13L 3300002769 Metatranscriptome Analysis released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 1019616 3621 23 1 36 4 0.0 Metatranscriptome 3300016732 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101403AT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016732 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 310107733 699270 203 336 5243 5648 SRX3780779 Unrestricted 0.0 Metatranscriptome 3300036555 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp02_R36 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036555 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 211093826 459472 595 89 1192 1311 SRX8836597 Unrestricted 26.33 Metatranscriptome 3300010145 *Microbiome Permanent Draft Soil microbial communities from various locations in USA and Cambodia to study soil gas exchange rates Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010145 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Grasslands Soil Unclassified Soil 20.147 -155.8342 244931251 605969 161 850 46247 6790 SRX2525532 Unrestricted 0.0 Metatranscriptome 3300051247 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Lindberg, Bavaria, Germany - BW_CL_010R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051247 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 49.039623 13.315806 84418945 213846 390 330 1386 1446 Unrestricted 85.73 Metatranscriptome 3300030981 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PO 4C (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030981 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 378142832 1320825 7451 571 9981 1509 SRX2753453 Unrestricted 0.0 Metatranscriptome 3300032711 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red3_24May_deep (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032711 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 1080092272 1860357 19 10 22 167 SRX6410049 Unrestricted 17.9 Metatranscriptome 3300054675 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 37-S49Day28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300054675 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 116482423 232286 34 5 93 46 Unrestricted 36.57 Metatranscriptome 3300031102 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031102 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 80622952 150729 69 57 75 313 SRX5352006 Unrestricted 18.77 Metatranscriptome 3300008877 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of boa constrictors from Steinhart Aquarium in San Francisco, USA - CAS06_Brain University of California, San Francisco 3300008877 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Brain Nervous system Unclassified Brain 7460590 20018 0 0 1 0 SRX170634 0.0 Metatranscriptome 3300037759 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - F18JunL (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037759 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4327 16.6819 126017534 264284 160 560 789 2078 SRX9164983 Unrestricted 27.75 Metatranscriptome 3300052494 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 114-S77Day63 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052494 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 130680863 279557 38 3 134 50 Unrestricted 38.76 Metatranscriptome 3300037648 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_N3_C1_D2_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037648 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 56689967 108821 502 1823 4813 4892 SRX9385109 Unrestricted 192.16 Metatranscriptome 3300012383 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_4_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012383 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 131007984 315724 88 662 6475 6584 Unrestricted 0.0 Metatranscriptome 3300048969 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 49+57 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048969 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.8286 -82.5011 31980937 70662 120 69 272 359 Restricted 29.36 Metatranscriptome 3300012712 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES121 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012712 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 140720757 295194 73 118 571 3517 SRX3011049 Unrestricted 0.0 Metatranscriptome 3300002688 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_100m_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002688 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 28948939 76966 91 67 594 1048 Unrestricted 0.0 Metatranscriptome 3300010982 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 corn stover (Eukaryote Community Metatranscriptome) (version 9) (version 8) DOE Joint Genome Institute (JGI) 3300010982 Metatranscriptome Analysis rnaSPAdes v. 0.1.1 No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 40.102108 -88.227299 682538235 1336114 118 595 385 1173 SRX5780594 Unrestricted 0.0 Metatranscriptome 3300016699 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES160 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016699 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.099 -89.405 131849039 276252 236 313 3183 4969 SRX3780239 Unrestricted 0.0 Metatranscriptome 3300008675 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-44 University of Hawaii 3300008675 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 1933771 3792 2 1 153 32 0.0 Metatranscriptome 3300004803 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004803 Metatranscriptome Analysis megahit v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere and bulk soil 42.3912 -85.383786 1008168077 3027830 2776 26320 10207 61510 SRX2705627 Unrestricted 0.0 Metatranscriptome 3300008557 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - PM71.FECAL.14dpc CCME-COLORADO 3300008557 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 5422473 22269 84 3 1267 15 0.0 Metatranscriptome 3300048952 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 33 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048952 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 42.4295 -81.2044 3065292 6173 7 7 30 19 Restricted 169.2 Metatranscriptome 3300004617 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 47 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004617 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 152252958 441673 8682 4157 33674 9002 Unrestricted 0.0 Metatranscriptome 3300046573 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-43 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046573 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4199 -64.1151 98292804 233175 367 9 506 105 Unrestricted 16.69 Metatranscriptome 3300007589 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_T0_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007589 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 55390647 184760 12957 10601 36342 26139 SRX3197482 Unrestricted 0.0 Metatranscriptome 3300031504 *Microbiome Permanent Draft Soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_N_R6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031504 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thb15@psu.edu Terrence Bell No Engineered Artificial ecosystem Surface biofilm Soil microcosm Unclassified soil 40.7997 -77.8629 17656113 37213 105 38 807 495 SRX5811924 Unrestricted 74.69 Metatranscriptome 3300052405 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 3_50_4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052405 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 128475800 329338 232 240 1345 1588 Unrestricted 45.17 Metatranscriptome 3300003942 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 65 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003942 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 5730575 16268 88 74 1545 429 Unrestricted 0.0 Metatranscriptome 3300009911 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 6, surface; RNA IDBA-UD Marine Biological Laboratory 3300009911 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 7.61 31250070 75526 362 403 1585 1215 0.0 Metatranscriptome 3300003568 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Avena fatua rhizosphere microbial communities - H4_Bulk_Litter_24 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003568 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mkfstone@berkeley.edu, nuccio1@llnl.gov; mkfstone@berkeley.edu Mary Firestone, Erin Nuccio; Mary Firestone No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.97364 -123.117453 31026743 93247 127 108 297 1015 SRX2558278 Unrestricted 0.0 Metatranscriptome 3300028333 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 60R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028333 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 141997174 300289 230 52 344 764 SRX5112370 Unrestricted 23.12 Metatranscriptome 3300006644 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_A2_L (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006644 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wagner@microbial-ecology.net Michael Wagner Yes 28386012 Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 85896865 305714 7931 11283 22666 26846 SRX5780957 Unrestricted 0.0 Metatranscriptome 3300019229 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_1_16_1Ra (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019229 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9228 -106.9513 171898192 404754 119 740 10609 5630 SRX3915681 Unrestricted 0.0 Metatranscriptome 3300017216 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no Na2SiO3, 25 C, 34 psu salinity and 323 ?mol photons light - Symbiodinium sp. CCMP 2430 (MMETSP1117) National Center for Genome Resources 3300017216 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -23.5 152.0 37361603 58282 24 1 47 3 0.0 Metatranscriptome 3300059513 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 59R_AW_T2_R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059513 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 254161461 631220 634 411 2332 2243 Unrestricted 58.21 Metatranscriptome 3300017199 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in L1 medium with seawater and ammonium, 24 C, 33 psu salinity and 565 ?mol photons light - unclassified eukaryote CCMP 2175 (MMETSP1470) National Center for Genome Resources 3300017199 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 22.75 -158.0 26393136 35765 31 12 35 16 0.0 Metatranscriptome 3300009350 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from the North Atlantic ocean - ACM35 University of Georgia 3300009350 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 48631543 155206 74 62 371 922 0.0 Metatranscriptome 3300030612 *Microbiome Permanent Draft Metatranscriptome of decayed wood fungal communities from Pinus contorta in National Forests from Montana, United States Metatranscriptome of decayed wood fungal communities from Pinus contorta in Tenderfoot Creek Experimental Forest, Montana, United States - TCEF2-1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030612 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes dcullen@wisc.edu Daniel Cullen No Host-associated Plants Stem Phyllosphere Wood decay decayed wood 46.9233 -110.8694 521746528 1039199 78 35 180 175 SRX4804235 Unrestricted 0.0 Metatranscriptome 3300021292 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States - S.493 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021292 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.178 -123.853 52448269 119659 158 502 2058 4685 SRX4017788 Unrestricted 0.0 Metatranscriptome 3300004529 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 94_HOW11 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004529 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 24851741 55642 163 17 671 50 SRX4923661 Unrestricted 0.0 Metatranscriptome 2061766005 *Microbiome Permanent Draft Hypersaline mat water microbial communities from Elkhorn Slough, California, USA Elkhorn Slough cyanobacterial mat night DOE Joint Genome Institute (JGI) 2061766005 Metatranscriptome Analysis Newbler No Yes sgtringe@lbl.gov Susannah Tringe Yes 23190731 Environmental Aquatic Saline Non-marine Saline and Alkaline Microbial mats Hypersaline mat water 36.82188 -121.744 55432056 143904 36 0 345 0 0.0 Metatranscriptome 3300010878 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 3A (Eukaryote Community Metatranscriptome) (version 7) (version 7) DOE Joint Genome Institute (JGI) 3300010878 Metatranscriptome Analysis rnaSPAdes v. 0.1.1 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 787736100 1811289 4800 694 12017 1513 SRX2752796 Unrestricted 0.0 Metatranscriptome 3300016702 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Metatranscriptome of peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016702 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 265911268 605521 137 105 7879 1046 SRX3204314 Unrestricted 0.0 Metatranscriptome 3300048983 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 80a (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048983 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.9364 -81.6542 1473366 3183 9 3 22 23 Restricted 382.11 Metatranscriptome 3300046277 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_4_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046277 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 62718888 106187 1 0 23 1 Restricted 198.38 Metatranscriptome 3300041445 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaT AgResearch, New Zealand, Mosgeil 3300041445 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Rhizoplane Roots Dairy farm pasture -43.648506 172.343549 14373287 27011 341 308 1230 781 0.0 Metatranscriptome 3300055315 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - m4.3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055315 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 123698049 268414 2 0 14 2 Unrestricted 95.5 Metatranscriptome 3300000337 *Microbiome Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - metatranscriptome cDNA-P3 DOE Joint Genome Institute (JGI) 3300000337 Metatranscriptome Analysis No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 306555 1148 31 1 885 4 0.0 Metatranscriptome 3300008817 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of boa constrictors from Steinhart Aquarium in San Francisco, USA - CAS07_Lung University of California, San Francisco 3300008817 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Lung Respiratory system Unclassified Lung 261205 948 2 0 0 0 SRX170615 0.0 Metatranscriptome 3300062002 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 51_controlsoil_1_T5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300062002 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 74638813 194385 96 94 782 635 Unrestricted 141.82 Metatranscriptome 3300046192 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_6_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046192 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 89574271 140806 3 0 18 1 Restricted 102.73 Metatranscriptome 3300041990 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Metatranscriptome of feshwater microbial communities from Ohio, USA - greatmiami_2019_sw_WHONDRS-S19S_0099 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300041990 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 39.2386 -84.7123 78470540 171739 207 144 674 990 SRX14870795 Unrestricted 49.35 Metatranscriptome 3300017291 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in enriched f/2 medium with seawater, 10.6uM sodium metasilicate, 16 C, 35 psu salinity and 92 ?mol photons light - Pseudo-nitzschia fraudulenta WWA7 (MMETSP0851) National Center for Genome Resources 3300017291 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 34.0847 -119.05 66697309 93689 118 10 201 19 0.0 Metatranscriptome 3300047345 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_3_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047345 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 127840293 186111 4 0 35 0 Restricted 124.93 Metatranscriptome 3300052473 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 8-S25Day63 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052473 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 179426762 378933 56 13 197 93 Unrestricted 46.84 Metatranscriptome 3300037034 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp02_R50 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037034 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 393116854 766514 320 53 721 717 SRX8837893 Unrestricted 45.26 Metatranscriptome 3300016946 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in L1 medium with seawater, 20 C, 33 psu salinity and 586 ?mol photons light - Stichococcus sp. RCC1054 (MMETSP1473) National Center for Genome Resources 3300016946 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine -31.866667 -91.416667 24402325 23192 6 2 14 1 0.0 Metatranscriptome 3300019121 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_025 - TARA_A100000394 (ERX1782343-ERR1711910) Canada's Michael Smith Genome Sciences Centre 3300019121 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.3888 19.3905 107051889 235818 12 7 43 132 0.0 Metatranscriptome 3300018655 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_064 - TARA_N000000522 (ERX1782387-ERR1711943) Canada's Michael Smith Genome Sciences Centre 3300018655 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -29.5019 37.9889 84282244 221204 179 28 696 1042 0.0 Metatranscriptome 3300018577 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Eukaryotic communities of water from different depths collected during the Tara Oceans expedition - TARA_N000000618 (ERX1086440-ERR1007417) Genoscope 3300018577 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ocean water 25379670 85193 35 124 55 910 ERX1782263, ERX1782150, ERX1086440 0.0 Metatranscriptome 3300019083 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS680_3p0_dT J. Craig Venter Institute (JCVI) 3300019083 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 56.1664 16.378218 27032470 75128 215 191 337 354 0.0 Metatranscriptome 3300004964 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 77 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300004964 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 56495318 186880 2987 383 9330 1006 Unrestricted 0.0 Metatranscriptome 3300006280 *Microbiome Permanent Draft Prairie soil microbial communities from Kansas, USA, after rainfall Prairie soil microbial communities from Kansas, USA, after rainfall - K05 Oregon State University 3300006280 Metatranscriptome Analysis VELVET 1.2.10, combine 23, 27, 31 released per JGI data release policy No Yes lzeglin@ksu.edu Lydia Zeglin No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.1038 -96.6133 2526846 15184 13 0 13 4 0.0 Metatranscriptome 3300042499 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_Cl14_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042499 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 50949914 70877 0 1 0 1 Unrestricted 219.11 Metatranscriptome 3300002881 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI073_165m_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002881 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 40934908 81731 23 35 497 354 Unrestricted 0.0 Metatranscriptome 3300008603 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-7 University of Hawaii 3300008603 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 139187 208 1 0 49 10 0.0 Metatranscriptome 3300032128 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen2, Rep 2, Chloramphenicol (Eukaryote Community Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300032128 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 23787645 23852 0 1 0 0 SRX5359899, SRX5359900 Unrestricted 0.0 Metatranscriptome 3300018901 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_039 - TARA_N000000014 (ERX1782459-ERR1712126) Canada's Michael Smith Genome Sciences Centre 3300018901 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 18.5584 66.4725 416018317 713582 7 27 39 226 0.0 Metatranscriptome 3300048524 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_7_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048524 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 18393800 37374 2 0 18 1 Restricted 175.58 Metatranscriptome 3300035632 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_0400_MSt6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035632 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 91399291 217865 1 1 46 0 SRX8248397 Unrestricted 274.55 Metatranscriptome 3300028250 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 8R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028250 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 33683910 76299 218 40 370 749 SRX5202755 Unrestricted 21.82 Metatranscriptome 3300031479 *Microbiome Permanent Draft Soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - STER_N_R6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031479 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thb15@psu.edu Terrence Bell No Engineered Artificial ecosystem Surface biofilm Soil microcosm Unclassified soil 40.7997 -77.8629 7800115 11581 13 0 78 6 SRX5810964 Unrestricted 109.23 Metatranscriptome 3300036529 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp03_R63 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036529 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 186309098 395864 434 120 958 1742 SRX8839562 Unrestricted 25.0 Metatranscriptome 3300019069 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_138 - TARA_N000003017 (ERX1782247-ERR1712239) Canada's Michael Smith Genome Sciences Centre 3300019069 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 6.3363 -103.0746 15986129 32203 0 4 5 35 0.0 Metatranscriptome 3300003706 *Microbiome Permanent Draft Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, for analyzing deforestation at different spatial scales Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A100I (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003706 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes nusslein@microbio.umass.edu Nusslein, Klaus, Klaus Nusslein No Environmental Terrestrial Tropical forest Soil Unclassified Tropical rainforest soil -10.0 -62.0 5107387 10374 433 796 3259 1900 SRX5329107 Unrestricted 0.0 Metatranscriptome 3300009233 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from Amazon river, Brazil - RCM9 University of Georgia 3300009233 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic River Freshwater Unclassified River water 367161163 1124983 47 64 738 363 SRX860925 0.0 Metatranscriptome 3300054633 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_CL_020R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300054633 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0589 10.44392 205397084 517047 736 607 2965 2892 Unrestricted 45.01 Metatranscriptome 3300034644 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034644 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.920406 -106.94828662 231651856 536434 505 239 2527 1777 SRX8239468 Unrestricted 15.56 Metatranscriptome 3300032970 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_15MAY2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032970 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3951 -85.3736 59336469 99916 14 10 37 47 SRX7519158 Unrestricted 48.6 Metatranscriptome 3300035344 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0817S12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035344 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0388 28365752 54387 81 200 1760 676 SRX8237184 Unrestricted 27.43 Metatranscriptome 3300016987 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, no nitrate, 14 C, 36 psu salinity and 149 ?mol photons light - Skeletonema dohrnii SkelB (MMETSP0563) National Center for Genome Resources 3300016987 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Estuary marine 41.57361 -71.40861 29092540 34071 1 1 1 1 0.0 Metatranscriptome 3300018700 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_124 - TARA_N000002043 (ERX1789597-ERR1719175) Canada's Michael Smith Genome Sciences Centre 3300018700 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -9.1508 -140.4969 129648548 292486 0 6 1 44 0.0 Metatranscriptome 3300019052 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_132 - TARA_N000002402 (ERX1789503-ERR1719228) Canada's Michael Smith Genome Sciences Centre 3300019052 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 31.5237 -159.0351 827476117 1688190 3 140 27 568 0.0 Metatranscriptome 3300030984 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T23 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030984 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 55568147 102927 78 47 128 259 SRX5794468 Unrestricted 19.51 Metatranscriptome 3300032714 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red4_28May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032714 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 877874499 1486320 12 7 29 140 SRX6410112 Unrestricted 17.27 Metatranscriptome 3300028102 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 45R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028102 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 157667982 312299 190 33 284 473 SRX5172113 Unrestricted 27.98 Metatranscriptome 3300019188 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZE2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019188 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 49.044 13.617 26239493 59426 11 173 697 1160 SRX3937286 Unrestricted 0.0 Metatranscriptome 3300030545 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO142-VCO033SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030545 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2736 -71.1993 520834357 1172984 114 107 4547 3204 SRX4011315 Unrestricted 0.0 Metatranscriptome 3300031664 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRA5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031664 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 59.9989 10.7903 35167571 64439 25 22 39 82 SRX5808148 Unrestricted 21.34 Metatranscriptome 3300003715 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - N08B_Dec13 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003715 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 10898590 21247 145 49 424 131 SRX3339089 Unrestricted 0.0 Metatranscriptome 3300011017 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 39 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011017 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 7161065 17513 28 45 1670 350 Unrestricted 0.0 Metatranscriptome 3300016962 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater w/o silicate, 18 C, 20 psu salinity and 352 ?mol photons light - Emiliania huxleyi 374 (MMETSP1007) National Center for Genome Resources 3300016962 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 42.5 -69.0 17114618 23804 1 1 1 0 0.0 Metatranscriptome 3300022523 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-O (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022523 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 254600991 608856 329 781 5498 5242 SRX4405720 Unrestricted 0.0 Metatranscriptome 3300051602 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 72_50_4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051602 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 75072475 201293 159 182 1590 1183 Unrestricted 83.42 Metatranscriptome 3300017273 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from English Channel grown at 18 C, 40 psu salinity and 447 ?mol photons light - Elphidium margaritaceum (MMETSP1385) National Center for Genome Resources 3300017273 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 40222744 48096 0 0 0 1 0.0 Metatranscriptome 3300016959 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in ATCC medium 1525, diluted 1:4 in ATCC medium 1405, 20 C and 188 ?mol photons light - Stereomyxa ramosa Chinc5 (MMETSP0439) National Center for Genome Resources 3300016959 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.93318 -75.37881 29017915 32550 11 5 16 4 0.0 Metatranscriptome 3300050376 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T2_2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050376 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 105458373 159388 9 3 81 31 Unrestricted 236.28 Metatranscriptome 3300007330 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S7 250_A metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007330 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 260259746 735864 1336 1692 3967 4893 SRX3196621 Unrestricted 0.0 Metatranscriptome 3300008797 *Microbiome Permanent Draft Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample KO-2 University of Duisburg-Essen 3300008797 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Pond Freshwater Unclassified Eutrophic pond 51.46 7.0 83801295 294113 35 74 821 377 SRX505382 0.0 Metatranscriptome 3300046039 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-25 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046039 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4056 -64.9059 61298147 147244 666 47 1077 449 Unrestricted 20.12 Metatranscriptome 3300049117 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 82 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049117 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.9364 -81.6542 30798290 52788 31 7 60 38 Restricted 30.68 Metatranscriptome 3300055306 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP7.1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055306 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 97973681 216413 31 39 207 225 Unrestricted 154.07 Metatranscriptome 3300044945 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P34SSC2_191111_f (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300044945 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 34791361 85024 117 215 1667 1119 SRX20650861 Unrestricted 226.07 Metatranscriptome 3300018842 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_046 - TARA_N000000267 (ERX1789679-ERR1719218) Canada's Michael Smith Genome Sciences Centre 3300018842 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -0.6625 73.161 183179272 490581 37 31 71 264 0.0 Metatranscriptome 3300003608 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_100m_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003608 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 5185596 12939 159 30 588 189 Unrestricted 0.0 Metatranscriptome 3300049095 *Microbiome Permanent Draft Soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA Metatranscriptome of soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA - 2023_C_N300_10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049095 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 42.013 -93.743 63099268 155807 147 133 785 972 Unrestricted 57.81 Metatranscriptome 3300010126 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_0_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010126 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 83564030 189639 94 710 4580 5199 Unrestricted 0.0 Metatranscriptome 3300017577 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in ATCC 1651 MA medium w/o phosphatidylcholine, 4 C, 30 psu salinity and 145 ?mol photons light - Anophryoides haemophila AH6 (MMETSP1018) (SRX549050-SRR1294436) National Center for Genome Resources 3300017577 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 43.51667 -65.6 1483236 2536 0 1 1 1 0.0 Metatranscriptome 3300048709 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-109 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048709 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4426 -64.2061 22731852 51560 306 47 687 1522 Unrestricted 31.96 Metatranscriptome 3300009206 *Microbiome Permanent Draft Microbial communities of wastewater sludge from Singapore Microbial communities of wastewater sludge from Singapore - Sludge11_b2_February Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300009206 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified Wastewater sludge 1.2 103.45 232203882 913851 6466 1085 45145 3852 SRX373542 0.0 Metatranscriptome 3300003733 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003733 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 29331086 56392 410 513 1106 1429 SRX2568523 Unrestricted 0.0 Metatranscriptome 3300025760 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepB_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300025760 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 146540540 309301 32 50 154 408 SRX4547629 Unrestricted 36.99 Metatranscriptome 3300017308 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Gulf of Mexico in K medium w/o SiO2, 17 C, 30 psu salinity and 268 ?mol photons light - Hemiselmis andersenii CCMP 644 (MMETSP0043_2) National Center for Genome Resources 3300017308 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 36025369 57227 5 17 12 23 0.0 Metatranscriptome 3300052745 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_18B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052745 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Bulk soil Soil 38.992973 -123.067448 239966533 624019 191 185 1793 1160 Unrestricted 61.08 Metatranscriptome 3300059622 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 222R_AD_T2_R4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059622 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 123412517 304318 209 251 1271 1395 Unrestricted 39.78 Metatranscriptome 3300024861 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024861 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 209228878 434429 48 135 611 1000 SRX4547626 Unrestricted 26.61 Metatranscriptome 3300010084 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_24_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010084 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 44670220 106040 137 461 22022 4231 Unrestricted 0.0 Metatranscriptome 3300021902 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-1S (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021902 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 107402409 210578 65 75 119 319 SRX5203084 Unrestricted 0.0 Metatranscriptome 3300046591 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - G1-R2-A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046591 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.048 107416146 232616 162 99 483 328 Unrestricted 28.85 Metatranscriptome 3300031099 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031099 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92057636 -106.94874802 302264015 703827 816 477 3056 2359 SRX8133418 Unrestricted 25.78 Metatranscriptome 3300017205 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater and 400nM iron, 10.6uM silica, 19 C, 35 psu salinity and 138 ?mol photons light - Thalassiosira weissflogii CCMP 1010 (MMETSP0900_2) National Center for Genome Resources 3300017205 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.0 -65.0 33989815 36485 1 1 1 1 0.0 Metatranscriptome 3300031729 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean - PS103-4.R2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031729 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified marine -55.8778 1.056 1317607072 2428380 58 3 68 218 SRX5356513 Unrestricted 13.28 Metatranscriptome 3300037844 *Microbiome Permanent Draft Marine planktonic microbial communities from Bay of Bengal, Indian Ocean Metatranscriptome of marine planktonic microbial communities from Bay of Bengal, Indian Ocean - 3E (SRX5580368-SRR8790607) Nanyang Technological University 3300037844 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. released by JGI data releasing policy Yes Yes flauro@ntu.edu.sg Federico Lauro No Environmental Aquatic Unclassified Marine Unclassified Marine planktonic 2.27 81.11 44558885 205339 1026 179 3137 2672 0.0 Metatranscriptome 3300018960 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_076 - TARA_N000000879 (ERX1789423-ERR1719357) Canada's Michael Smith Genome Sciences Centre 3300018960 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -20.9406 -35.196 564718494 1033665 1 36 2 161 0.0 Metatranscriptome 3300017032 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in K medium, 20 C, 35 psu salinity and 501 ?mol photons light - Bolidomonas pacifica RCC 208 (MMETSP1319) National Center for Genome Resources 3300017032 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -16.0 -150.0 20841330 29075 13 3 10 7 0.0 Metatranscriptome 3300008563 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-42 University of Hawaii 3300008563 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 2423443 4853 8 4 234 58 0.0 Metatranscriptome 3300004836 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004836 Metatranscriptome Analysis megahit v. 0.2.0 No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 638124753 1715712 3313 1464 10139 8589 SRX2518345 Unrestricted 0.0 Metatranscriptome 3300003258 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment ColumnT-8K5-30 454 Life Sciences 3300003258 Metatranscriptome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.342219 40.479289 6-8 0 0 0 0 0 0 0.0 Metatranscriptome 3300048054 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P35SSC1_191108_c (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048054 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 11446185 27122 36 115 481 654 SRX20650850 Unrestricted 97.66 Metatranscriptome 3300026562 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepC_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026562 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 185593347 382386 72 285 801 1833 SRX4797204, SRX4797203 Unrestricted 20.06 Metatranscriptome 3300018995 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_128 - TARA_N000002299 (ERX1782426-ERR1711902) Canada's Michael Smith Genome Sciences Centre 3300018995 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 0.0396 -153.8066 410333594 961749 25 23 104 276 0.0 Metatranscriptome 3300007253 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 10/23/14 A1 RNA (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007253 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ebyoung@uwm.edu Erica Young, Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 544735899 1447709 3436 2866 8092 10585 SRX5628725 Unrestricted 0.0 Metatranscriptome 3300041705 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_491 MetaT AgResearch, New Zealand, Mosgeil 3300041705 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 36892424 83729 235 48 1386 105 0.0 Metatranscriptome 3300030809 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030809 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7416 -117.7042 25141621 51891 73 36 156 260 SRX5794000 Unrestricted 23.23 Metatranscriptome 3300018761 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_137 - TARA_N000002934 (ERX1789455-ERR1719449) Canada's Michael Smith Genome Sciences Centre 3300018761 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine 14.2075 -116.6468 158227265 388170 12 17 50 268 0.0 Metatranscriptome 3300018934 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_144 - TARA_N000003183 Canada's Michael Smith Genome Sciences Centre 3300018934 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 36.3489 -72.7896 419069864 845062 166 86 539 671 0.0 Metatranscriptome 3300016840 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 14 C, 35 psu salinity and 460 ?mol photons light - Thalassiosira gravida GMp14c1 (MMETSP0492) National Center for Genome Resources 3300016840 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 41.92732 -67.85788 17345463 25024 2 1 1 1 0.0 Metatranscriptome 3300009865 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Sea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC1T Shell Corporation 3300009865 Metatranscriptome Analysis Trinity Released on PI's request No Yes nicolas.tsesmetzis@shell.com Nicolas Tsesmetzis No Environmental Aquatic Cold seeps Marine Sediment Sediment 27.4 -93.2 317411907 1559460 15445 4245 62499 10436 0.0 Metatranscriptome 3300051252 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Schonbrunner Wald, Bavaria, Germany - BW_TH_029R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051252 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.904182 13.562678 34389916 90782 173 176 706 710 Unrestricted 168.35 Metatranscriptome 3300026468 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 79R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026468 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 196109809 405621 169 30 255 594 SRX4796134 Unrestricted 27.76 Metatranscriptome 3300016809 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of freshwater eukaryotic communities from unknown location in MiEB1B12 medium, at 22 C, 0 psu salinity and 433 ?mol photons light - Porphyridium aerugineum SAG 1380-2 (MMETSP0313) National Center for Genome Resources 3300016809 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 17379033 21581 1 2 2 1 0.0 Metatranscriptome 3300017080 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater and 14nM iron, 19 C, 35 psu salinity and 640 ?mol photons light - Thalassiosira weissflogii CCMP 1010 (MMETSP1421) National Center for Genome Resources 3300017080 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.0 -65.0 29807656 31142 12 8 33 8 0.0 Metatranscriptome 3300003255 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment ColumnT-9K3-90 454 Life Sciences 3300003255 Metatranscriptome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.342219 40.479289 6-8 0 0 0 0 0 0 0.0 Metatranscriptome 3300008776 *Microbiome Permanent Draft Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico - 100m_0.2-1.6micron Georgia Institute of Technology 3300008776 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hypoxic zone Marine Unclassified Ocean water 18.9 -104.5 1778728 3616 5 0 831 44 SRX854081 0.0 Metatranscriptome 3300006686 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP0258 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006686 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -3.03 -27.33 50451721 130239 3309 2347 7076 7184 SRX3299034 Unrestricted 0.0 Metatranscriptome 3300031378 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CBN3_319_33.10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031378 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 80.9595 -132.1842 119629977 242874 108 38 457 1216 SRX5803290 Unrestricted 24.37 Metatranscriptome 3300018998 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_131 - TARA_N000002360 (ERX1782428-ERR1712117) Canada's Michael Smith Genome Sciences Centre 3300018998 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 22.7267 -157.9955 420820041 966282 39 62 170 672 0.0 Metatranscriptome 3300030840 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 8 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030840 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ake.olson@slu.se; francis.martin@inrae.fr Ake Olson; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 506670247 1291188 1223 430 2695 838 SRX3345009 Unrestricted 0.0 Metatranscriptome 3300008554 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - C8.FECAL.14dpc CCME-COLORADO 3300008554 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 3591844 14267 51 1 1123 6 0.0 Metatranscriptome 3300004614 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 48 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004614 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 130875262 414290 7680 4115 28422 9217 Unrestricted 0.0 Metatranscriptome 3300009306 *Microbiome Permanent Draft Microbial communities of freshwater from Kranji Reservoir, Singapore Microbial communities of freshwater from Kranji Reservoir, Singapore - Krb6-3pm Massachusetts Institute of Technology 3300009306 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater reservoir 1.4371666 103.7186571 5081217 16733 21 8 968 181 SRX472185 0.0 Metatranscriptome 3300031012 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T33 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031012 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 46022006 83869 64 52 77 239 SRX5794804 Unrestricted 24.3 Metatranscriptome 3300042020 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Metatranscriptome of estuary water microbial communities from Narragansett Bay, Rhode Island, USA - E2_AmbCPA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042020 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.9078 -71.5683 637426454 1242235 308 97 563 784 SRX14873775 Unrestricted 16.52 Metatranscriptome 3300019041 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_138 - TARA_N000003007 Canada's Michael Smith Genome Sciences Centre 3300019041 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 6.3306 -102.9531 588615390 1444862 10 94 22 318 0.0 Metatranscriptome 3300017596 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 18 C, 32 psu salinity and 534 ?mol photons light - Chaetoceros affinis CCMP 159 (MMETSP0092) (SRX549066-SRR1294452) National Center for Genome Resources 3300017596 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 4770048 9623 3 5 7 8 0.0 Metatranscriptome 3300006721 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S7 250_B metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006721 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 150509489 433864 4409 2242 11731 7497 SRX3196623 Unrestricted 0.0 Metatranscriptome 3300017208 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in Ukeles E medium, at 18 C, 15 psu salinity and 512 ?mol photons light - Rhodomonas lens RHODO (MMETSP0484_2) National Center for Genome Resources 3300017208 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 37160870 55414 1 9 3 8 0.0 Metatranscriptome 3300046274 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_4_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046274 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 32488367 56172 1 0 17 0 Restricted 221.45 Metatranscriptome 3300031203 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_D6_8mM_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031203 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 23450408 34200 2 0 2 4 SRX6408537 Unrestricted 33.17 Metatranscriptome 3300010062 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_2_4_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010062 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 17266245 41667 170 412 24296 3758 Unrestricted 0.0 Metatranscriptome 3300038279 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_N3_C1_D6_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038279 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 56204428 114375 490 725 5684 2413 SRX9390240 Unrestricted 192.18 Metatranscriptome 3300026465 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 48R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026465 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 189129636 395466 192 34 272 523 SRX4795996 Unrestricted 23.19 Metatranscriptome 3300036486 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metataranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0608S20re (Metagenome Metatranscriptome) (Annotation) DOE Joint Genome Institute (JGI) 3300036486 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes brandi.reese@tamucc.edu; bkielreese@disl.org Brandi Reese; Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8959 -97.0388 199537739 419579 98 493 2238 1580 SRX8669689 Unrestricted 28.88 Metatranscriptome 3300041708 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_495 MetaT AgResearch, New Zealand, Mosgeil 3300041708 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 12318539 27854 237 84 1208 109 0.0 Metatranscriptome 3300003673 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring microbial communities from Elkhorn Slough, Monterey Bay, USA - CR6A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003673 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes jackson.z.lee@nasa.gov, jim.fredrickson@pnnl.gov; jackson.z.lee@nasa.gov Jackson Lee, Jim Fredrickson; Jackson Lee No Environmental Aquatic Intertidal zone Marine Estuary: Microbial mat Hypersaline mat 36.83 -121.785 5932038 14512 31 180 288 790 Unrestricted 0.0 Metatranscriptome 3300010059 *Microbiome Permanent Draft Continental margin sediment microbial communities from various locations Metatranscriptome of Continental margin sediment microbial communities from the Arctic Ocean - SV_M10_0 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010059 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michaelgraw@gmail.com; rcolwell@coas.oregonstate.edu Michael Graw; Frederick Colwell No Environmental Aquatic Continental margin Marine Sediment Continental margin sediment 79.0077 6.9046 1959503 4261 5 10 706 100 SRX2525674 Unrestricted 0.0 Metatranscriptome 3300017373 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in L1 medium with seawater, 22 C, 33 psu salinity and 574 ?mol photons light - Brandtodinium nutricula RCC 3387 (MMETSP1462) National Center for Genome Resources 3300017373 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 43.683333 7.316667 63449769 86348 6 2 17 1 0.0 Metatranscriptome 3300006647 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_T0_4R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006647 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 114456697 407044 11235 8799 33415 24209 SRX5781059, SRX5781060 Unrestricted 0.0 Metatranscriptome 3300007230 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 9/18/14 C RNA (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007230 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ebyoung@uwm.edu Erica Young, Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 283754380 725265 1916 1957 5124 7726 SRX5628707 Unrestricted 0.0 Metatranscriptome 3300013507 *Microbiome Permanent Draft Roseovarius nubinhibens ISM and Alexandrium tamarense modeled microbial communities from the University of Georgia, USA Metatranscriptome of Roseovarius nubinhibens ISM and Alexandrium tamarense co-culture from University of Georgia, USA - T8_LowC_B metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013507 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes mmoran@uga.edu Mary Ann Moran No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Laboratory simulated co-culture 33.933 -83.366 6067895 9997 0 0 570 31 SRX3021000 Unrestricted 0.0 Metatranscriptome 3300061803 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 24_cerealrye_2_T21 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061803 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 20139737 51883 53 42 431 412 Unrestricted 307.21 Metatranscriptome 3300003837 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_30_12L Marine Biological Laboratory 3300003837 Metatranscriptome Analysis CLC Genomics WB7 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 3725126 8792 161 2 261 10 0.0 Metatranscriptome 3300008367 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34688 J. Craig Venter Institute (JCVI) 3300008367 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 26467 60 0 0 0 1 0.0 Metatranscriptome 3300018756 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_076 - TARA_N000000879 (ERX1789481-ERR1719268) Canada's Michael Smith Genome Sciences Centre 3300018756 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -20.9406 -35.196 189137281 367724 1 17 4 91 0.0 Metatranscriptome 3300038171 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_M1_C1_D3_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038171 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 61930961 132912 335 337 3665 1034 SRX9390860 Unrestricted 231.58 Metatranscriptome 3300052340 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of lake water microbial communities from Sandhills, Nebraska, United States - NSL_Border_2020 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052340 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.79185 -102.53404 44328679 98764 12 17 213 32 Unrestricted 1691.1 Metatranscriptome 3300021869 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-135M (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021869 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 24160282 65601 76 91 167 286 SRX5295539 Unrestricted 0.0 Metatranscriptome 3300004967 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 68 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004967 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 65506142 216051 6208 2632 21867 6395 Unrestricted 0.0 Metatranscriptome 3300011071 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 42 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011071 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 72247424 167632 198 965 10858 2722 Unrestricted 0.0 Metatranscriptome 3300018574 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS677_3p0_dT J. Craig Venter Institute (JCVI) 3300018574 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 58.581234 18.232801 27822937 73650 281 244 482 538 0.0 Metatranscriptome 3300036126 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of sediment microbial communities from Prado wetlands, California, USA - CSM_Prado_Oct18_AM_Bottom (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036126 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 35658021 74690 96 180 2341 845 SRX8771713 Unrestricted 60.38 Metatranscriptome 3300035386 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Metatranscriptome of Bradyrhizobium sp. W and Methylocaldum sp. 0917 mixed culture communities from SDSU, California, USA - Exp#7 BR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035386 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified artificial sand 32.7717 -117.0735 28399192 40685 1 2 11 6 SRX8295124 Unrestricted 516.75 Metatranscriptome 3300008893 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of boa constrictors from Steinhart Aquarium in San Francisco, USA - CAS06_GI University of California, San Francisco 3300008893 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Unclassified Digestive system Unclassified GI 871609 2785 0 0 0 0 SRX170640 0.0 Metatranscriptome 3300037037 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 RNA GHGlow gp2 (Metagenome Metatranscriptome) (NovaSeq) (version 2) DOE Joint Genome Institute (JGI) 3300037037 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -40.3794 175.6106 382199435 793897 5 55 208 191 SRX4497226, SRX7509749 Unrestricted 0.0 Metatranscriptome 3300019185 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Soil microbial communities from Bohemian Forest, Czech Republic - CSE2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019185 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 49.044 13.617 22027366 49230 16 159 541 1063 SRX3937181 Unrestricted 0.0 Metatranscriptome 3300030548 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO133-ANR016SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030548 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2719 -71.2088 572278191 1234062 107 103 3070 932 SRX4010655 Unrestricted 0.0 Metatranscriptome 3300021852 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.23 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021852 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.27 -123.946 88054539 206052 395 1710 6567 8939 SRX4015825 Unrestricted 0.0 Metatranscriptome 3300008814 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of boa constrictors from Steinhart Aquarium in San Francisco, USA - CAS06_Liver University of California, San Francisco 3300008814 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Biliary tract Digestive system Liver Liver 4015100 12367 0 0 0 0 SRX170621 0.0 Metatranscriptome 3300000334 *Microbiome Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Thermokarst Bog cDNA B4 Metatranscriptome DOE Joint Genome Institute (JGI) 3300000334 Metatranscriptome Analysis No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 11200640 37779 345 295 4730 727 0.0 Metatranscriptome 3300003718 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003718 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 18639623 36019 233 383 528 936 SRX2568630 Unrestricted 0.0 Metatranscriptome 3300016984 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Gulf of Mexico in GSe medium with ammonium, 22 C, 32 psu salinity and 632 ?mol photons light - Aureoumbra lagunensis CCMP 1510 (MMETSP0890) National Center for Genome Resources 3300016984 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Estuary marine 27.4708 -97.32 21309038 24950 2 5 3 8 0.0 Metatranscriptome 3300035347 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0817U20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035347 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.039 29926797 56012 206 296 5337 791 SRX8237192 Unrestricted 64.59 Metatranscriptome 3300034647 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_0600_MSt7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034647 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 115503592 274459 1 0 60 0 SRX8248646 Unrestricted 311.08 Metatranscriptome 3300029636 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029636 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 1253911550 2689971 94 209 972 1103 SRX5337869 Unrestricted 7.22 Metatranscriptome 3300030962 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A4_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300030962 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate/submediterranean forest 42.0 1.0 405341363 921483 198 101 4584 1051 SRX2998742 Unrestricted 0.0 Metatranscriptome 3300017305 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of freshwater ice eukaryotic communities from Messo in f/2 medium with sea water w/o silica, 3 C, 3 psu salinity and 345 ?mol photons light - Scrippsiella hangoei SHHI-4 (MMETSP0368) National Center for Genome Resources 3300017305 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Ice Freshwater Unclassified freshwater ice 68.46306 78.22333 73181188 95755 0 5 0 1 0.0 Metatranscriptome 3300052748 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_27 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052748 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 100495205 258607 189 159 1043 907 Unrestricted 69.74 Metatranscriptome 3300023670 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 78R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023670 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 22040200 45343 18 7 246 451 SRX4475885 Unrestricted 56.55 Metatranscriptome 3300004486 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 39 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004486 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 21453716 76538 1365 676 4700 1446 Unrestricted 0.0 Metatranscriptome 3300024856 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepA_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024856 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 203139879 412159 60 174 538 1384 SRX4547613 Unrestricted 20.02 Metatranscriptome 3300004322 *Microbiome Permanent Draft Metatranscriptomics studies in sediment microbial communities from the mangroves in Sao Paulo, Brazil Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC3A 3300004322 Metatranscriptome Analysis IDBA released by JGI data releasing policy No Yes luc.g.cabral@gmail.com Luc?lia Cabral, Lucelia Cabral No Environmental Aquatic Intertidal zone Marine Mangrove sediment Mangrove sediment -23.8553 -46.1394 22868546 67719 3812 2116 15451 6342 0.0 Metatranscriptome 3300043281 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - FS1.Jun19.R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043281 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.5325 -110.7972 8-9 56125575 116279 37 1 399 2 SRX10107442 Unrestricted 50.03 Metatranscriptome 3300021883 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S0 C1 B9 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021883 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 28.999982 -14.999994 42024807 120567 165 76 380 329 SRX5203741 Unrestricted 0.0 Metatranscriptome 3300003951 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS907_80_12L10 Marine Biological Laboratory 3300003951 Metatranscriptome Analysis CLC Genomics WB7 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933 -130.014 1332117 3465 147 0 100 0 0.0 Metatranscriptome 3300037626 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_M1_C1_D5_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037626 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 39262451 75896 255 457 2676 1286 SRX9383699 Unrestricted 216.87 Metatranscriptome 3300017610 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine sediment eukaryotic communities from Great South Bay, New York in ATCC medium 790BY, 23 C, 25 psu salinity and 174 ?mol photons light - Aplanochytrium stocchinoi GSBS06 (MMETSP1346) (SRX549055-SRR1294441) National Center for Genome Resources 3300017610 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Sediment marine sediment 40.7 -73.1 23392708 35458 22 13 47 24 0.0 Metatranscriptome 3300030959 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 2A (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030959 Metatranscriptome Analysis megahit v. 0.2.0 No Yes fmartin1954@me.com Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 469805921 1251280 9026 1365 19646 4931 SRX2752757 Unrestricted 0.0 Metatranscriptome 3300009560 *Microbiome Permanent Draft Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea North East Pacific Ocean microbial community - Bloomer_DOMexp_control_2hr_metatranscriptome Massachusetts Institute of Technology 3300009560 Metatranscriptome Analysis Greengenes NAST aligner, Ribosomal Database Project (RDP) naive Bayesian classifier released per JGI data release policy No Yes sarabc@mit.edu Sara Collins No Environmental Aquatic Epipelagic Marine Unclassified open ocean 23.214666 -159.136166 53416676 216610 27475 1025 169015 7231 0.0 Metatranscriptome 3300048941 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 6 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048941 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.8658 -82.6407 13161178 31215 76 50 193 256 Restricted 39.31 Metatranscriptome 3300008922 *Microbiome Permanent Draft Microbial communities of nutrient treated water from Blanes Bay, Barcelona, Spain Microbial communities of nutrient treated water from Blanes Bay, Barcelona, Spain - NB2 Sodertorn University 3300008922 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Bay water 41.666 2.8 59187279 212414 507 287 3531 2897 ERX1055478 0.0 Metatranscriptome 3300008871 *Microbiome Permanent Draft Microbial communities of Wadden Sea tidal flat in Germany Microbial communities of Wadden Sea tidal flat in Germany - 0650 lowTide Bielefeld University 3300008871 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Tidal flat 53.73 7.67 24814675 77031 13 11 195 111 0.0 Metatranscriptome 3300028233 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - MB_1026D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028233 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 343829019 689258 168 41 302 556 SRX5172120 Unrestricted 51.79 Metatranscriptome 3300042412 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_180 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042412 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 152598235 348997 274 539 2585 2644 Unrestricted 48.39 Metatranscriptome 3300009218 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from Amazon river, Brazil - RCM1 University of Georgia 3300009218 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic River Freshwater Unclassified River water 360610298 1048403 94 64 1017 310 SRX857179 0.0 Metatranscriptome 3300017316 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Southern California in marine media K with soil extract, 18 C, 36 psu salinity and 359 ?mol photons light - Rhodomonas abbreviata Caron Lab Isolate Isolate (MMETSP1101) National Center for Genome Resources 3300017316 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 38436432 58895 1 12 7 11 0.0 Metatranscriptome 3300024573 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepA_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024573 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 293048678 611521 128 188 1204 1864 SRX4547695 Unrestricted 18.17 Metatranscriptome 3300011014 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 43 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011014 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 11466140 28503 33 67 3265 513 Unrestricted 0.0 Metatranscriptome 3300018749 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_124 - TARA_N000002036 (ERX1789662-ERR1719448) Canada's Michael Smith Genome Sciences Centre 3300018749 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -9.1504 -140.5216 134369590 372099 43 30 101 344 0.0 Metatranscriptome 3300031667 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031667 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 59.9979 10.7895 62027199 102100 17 20 22 95 SRX5807951, SRX7519947 Unrestricted 0.0 Metatranscriptome 3300018610 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - LD35M_ls2 J. Craig Venter Institute (JCVI) 3300018610 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 58.581234 18.232801 42877016 138290 86 17 150 172 0.0 Metatranscriptome 3300005480 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0800_B MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005480 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 20326216 59424 1345 11 3048 36 SRX2521784, SRX2521785 Unrestricted 0.0 Metatranscriptome 3300018511 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_041 - TARA_N000000074 (ERX1782325-ERR1712229) Canada's Michael Smith Genome Sciences Centre 3300018511 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 14.5536 70.0128 2811915 6707 1 2 0 37 0.0 Metatranscriptome 3300046296 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_6_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046296 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 70274675 117129 1 0 32 2 Restricted 148.85 Metatranscriptome 3300006232 *Microbiome Permanent Draft Marine sediment microbial communities from different distances from oil contamination, Gulf of Mexico Marine sediment microbial communities, 0.5 km from oil contamination,elevated hydrocarbon, Gulf of Mexico - BC315 Yale Center for Genome Analysis 3300006232 Metatranscriptome Analysis idba_tran released per JGI data release policy No Yes phu@lbl.gov Ping Hu No Environmental Aquatic Oceanic Marine Oil-contaminated sediment marine 28.3 -88.2 24407073 51092 3476 1548 10354 2694 0.0 Metatranscriptome 3300047348 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_3_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047348 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 45931574 74294 1 0 15 0 Restricted 423.33 Metatranscriptome 3300008353 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy - t60.CO.RNAseq.exp1 University of Naples 3300008353 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Cheese 25371 86 16 0 53 1 0.0 Metatranscriptome 3300018658 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_070 - TARA_N000000674 (ERX1789517-ERR1719451) Canada's Michael Smith Genome Sciences Centre 3300018658 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -20.4091 -3.1759 88215540 222119 0 7 8 56 0.0 Metatranscriptome 3300030987 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_144 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030987 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92045766 -106.94845279 69356712 168560 380 394 3568 2090 SRX8133091 Unrestricted 23.98 Metatranscriptome 3300017574 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 15 C, 28 psu salinity and 329 ?mol photons light - Alexandrium fundyense CCMP 1719 (MMETSP0196) (SRX549000-SRR1294386) National Center for Genome Resources 3300017574 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 43.1 70.782 650233 1810 0 3 1 0 0.0 Metatranscriptome 3300008426 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities from thermized milk in Italy - RawMilk.RNAseq.exp1 University of Naples 3300008426 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Raw milk 40579 158 19 0 115 0 0.0 Metatranscriptome 3300030946 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA7 EcM (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030946 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7184 6.3471 541571917 1522944 6871 2126 15406 6161 SRX3349206 Unrestricted 0.0 Metatranscriptome 3300008713 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - PM77.FECAL.14dpc CCME-COLORADO 3300008713 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 14292341 52004 92 3 1381 16 0.0 Metatranscriptome 3300024849 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepA_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024849 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 162367103 343463 69 113 1085 1061 SRX4547605 Unrestricted 23.19 Metatranscriptome 3300049626 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Metatranscriptome of beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - B3_CE3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049626 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.2552 -122.5085 83651994 161400 1 1 82 25 Restricted 32.58 Metatranscriptome 3300047619 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_3_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047619 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 21906009 42875 2 0 13 0 Restricted 227.89 Metatranscriptome 3300049114 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 73a (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049114 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.9364 -81.6542 623538 1033 1 3 12 29 Restricted 987.47 Metatranscriptome 3300008794 *Microbiome Permanent Draft Microbial communities from freshwater in the western basin of Lake Erie, USA Microbial communities from freshwater in the western basin of Lake Erie, USA - 882-1 University of Tennessee 3300008794 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.76 -83.31 6425982 17240 36 62 372 794 0.0 Metatranscriptome 3300018851 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_144 - TARA_N000003179 (ERX1782396-ERR1712089) Canada's Michael Smith Genome Sciences Centre 3300018851 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 36.3698 -72.9669 157880424 511930 21 98 56 484 0.0 Metatranscriptome 3300009333 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from the North Atlantic ocean - ACM52 University of Georgia 3300009333 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 32113248 98481 47 89 254 441 0.0 Metatranscriptome 3300019270 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Metatranscriptome of peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin17_10_metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019270 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 361409966 810596 340 725 6898 4425 SRX3887066 Unrestricted 0.0 Metatranscriptome 3300010930 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS917_55_13C_TP1_6 Marine Biological Laboratory 3300010930 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 12439901 25245 791 5 1792 16 0.0 Metatranscriptome 3300052408 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 3_50_13 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052408 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 164870248 415011 510 379 2946 2331 Unrestricted 38.02 Metatranscriptome 3300046800 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Metatranscriptome of soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046800 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.347657 -119.2808 102073033 164524 24 2 93 20 Unrestricted 35.45 Metatranscriptome 3300002685 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_200m_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002685 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 28981149 66797 54 41 651 328 Unrestricted 0.0 Metatranscriptome 3300004570 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 7_HOW4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004570 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 21337526 60111 2657 428 6829 1540 SRX2779753 Unrestricted 0.0 Metatranscriptome 3300011309 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S23 Surf_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011309 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 67273135 158910 183 65 1273 1875 SRX2524377 Unrestricted 0.0 Metatranscriptome 3300009755 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_11_14_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009755 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment Wetland 41.224 -82.304 98769597 208612 332 1788 23981 10715 SRX2525130 Unrestricted 0.0 Metatranscriptome 3300043779 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043779 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 28561418 66291 195 354 1026 1711 Unrestricted 51.52 Metatranscriptome 3300030702 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from Antarctic Ocean - PS103-14 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030702 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified marine -68.012 -0.0106 945173288 1679137 17 2 9 65 SRX5356517 Unrestricted 0.0 Metatranscriptome 3300010087 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_0_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010087 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 48258160 112934 52 418 10328 3889 Unrestricted 0.0 Metatranscriptome 3300055233 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP9.2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055233 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 59178931 110149 15 22 89 116 Unrestricted 55.31 Metatranscriptome 3300037886 *Microbiome Permanent Draft Marine planktonic microbial communities from Bay of Bengal, Indian Ocean Metatranscriptome of marine planktonic microbial communities from Bay of Bengal, Indian Ocean - 3M (SRX5580371-SRR8790604) Nanyang Technological University 3300037886 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. released by JGI data releasing policy Yes Yes flauro@ntu.edu.sg Federico Lauro No Environmental Aquatic Unclassified Marine Unclassified Marine planktonic 4.43 88.2 34971427 161339 1049 175 3233 2537 0.0 Metatranscriptome 3300028758 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Gln1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028758 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 63789084 121878 7 0 111 4 SRX5356203 Unrestricted 63.65 Metatranscriptome 3300061836 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 82_rapeseed_1_T21 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061836 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 28244180 65740 78 53 487 454 Unrestricted 215.83 Metatranscriptome 3300010875 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 3A (Eukaryote Community Metatranscriptome) (version 4) (version 4) DOE Joint Genome Institute (JGI) 3300010875 Metatranscriptome Analysis rnaSPAdes v. 0.1.1 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 633958931 1434502 3883 566 9891 1311 SRX2752796 Unrestricted 0.0 Metatranscriptome 3300030699 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from Antarctic Ocean - PS103-11 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030699 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified marine -66.538 -0.0103 1168084522 2049543 24 4 19 110 SRX5356518 Unrestricted 0.0 Metatranscriptome 3300009315 *Microbiome Permanent Draft Microbial communities of freshwater from Kranji Reservoir, Singapore Microbial communities of freshwater from Kranji Reservoir, Singapore - Krb4-8am Massachusetts Institute of Technology 3300009315 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater reservoir 1.4371666 103.7186571 7069898 23214 3 1 303 81 SRX472182 0.0 Metatranscriptome 3300006380 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1200_B MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006380 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 174957574 448646 2673 30 9032 96 SRX2521779 Unrestricted 0.0 Metatranscriptome 3300003565 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from the University of North Carolina, USA - metaT NBMF1_16_lowP_mix3_d2 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003565 Metatranscriptome Analysis rnnotator v. 3.3.1 Reverted to private per Tijana Glavina del Rio (Oct 2014) No Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9082 -79.0499 54880735 80042 0 0 0 0 SRX2556973, SRX2556972 Unrestricted 0.0 Metatranscriptome 3300031822 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen9, Rep 1 (Eukaryote Community Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031822 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 4692646 6681 1 0 5 0 SRX5360214 Unrestricted 0.0 Metatranscriptome 3300022466 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, Michigan, USA - G5R1_MAIN_12SEP2016_LR1 MT pilot (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300022466 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes shadeash@msu.edu Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Phyllosphere 42.39 -85.37 10467752 20756 40 119 96 548 SRX5781931, SRX5781932 Unrestricted 0.0 Metatranscriptome 3300018596 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_135 - TARA_N000002183 (ERX1782364-ERR1711927) Canada's Michael Smith Genome Sciences Centre 3300018596 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 32.931 -121.8645 53517068 132294 14 3 30 84 0.0 Metatranscriptome 3300017112 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater and 14nM iron, 19 C, 35 psu salinity and 630 ?mol photons light - Thalassiosira weissflogii CCMP 1010 (MMETSP1419) National Center for Genome Resources 3300017112 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.0 -65.0 33020273 32424 4 1 3 1 0.0 Metatranscriptome 3300018937 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_131 - TARA_N000002364 (ERX1789592-ERR1719202) Canada's Michael Smith Genome Sciences Centre 3300018937 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 22.7511 -157.9632 287919049 615378 2 48 5 146 0.0 Metatranscriptome 3300029282 *Microbiome Permanent Draft Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Sorghum rhizosphere microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B1.stcc.R1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300029282 Metatranscriptome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes colemanderr@gmail.com Devin Coleman-Derr No Host-associated Plants Rhizosphere Roots Unclassified sorghum rhizosphere 36.339058 -120.12031 50708870 85989 75 849 931 2756 0.0 Metatranscriptome 3300046211 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_2_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046211 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 36860942 64466 1 0 14 0 Restricted 189.54 Metatranscriptome 3300017124 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, low iron, at 5 C, 35 psu salinity and 560 ?mol photons light - Thalassiosira antarctica CCMP 982 (MMETSP0903) National Center for Genome Resources 3300017124 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 36268707 44588 6 1 5 1 0.0 Metatranscriptome 3300036371 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen2, Rep 1, Chloramphenicol (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036371 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 17895653 20108 0 0 1 2 SRX8381195, SRX8381196 Unrestricted 0.0 Metatranscriptome 3300031814 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZI4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031814 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 49.0427 13.6161 16572764 35885 134 186 1786 927 SRX5784762 Unrestricted 0.0 Metatranscriptome 3300037620 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen2, Rep 2, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037620 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 50060584 51746 2 0 10 2 SRX8380678, SRX8380679 Unrestricted 0.0 Metatranscriptome 3300018605 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_110 - TARA_N000001754 (ERX1782444-ERR1712177) Canada's Michael Smith Genome Sciences Centre 3300018605 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -2.0133 -84.589 65670447 148388 63 37 242 407 0.0 Metatranscriptome 3300046555 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - P2-R2-A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046555 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.357 19.047 165086551 383064 101 229 468 1023 Unrestricted 15.09 Metatranscriptome 3300052387 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_178B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052387 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Bulk soil Soil 38.992973 -123.067448 130834283 352141 185 172 1192 1005 Unrestricted 93.77 Metatranscriptome 3300019213 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019213 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 35.92 139.63 127249746 289930 58 202 20662 1142 SRX4809118 Unrestricted 0.0 Metatranscriptome 3300041560 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_387 MetaT AgResearch, New Zealand, Mosgeil 3300041560 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 14838391 33465 296 63 2454 98 0.0 Metatranscriptome 3300041661 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_131 MetaT AgResearch, New Zealand, Mosgeil 3300041661 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 7531153 16575 182 65 1346 133 0.0 Metatranscriptome 3300018951 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_011 - TARA_X000001338 (ERX1782096-ERR1711860) Canada's Michael Smith Genome Sciences Centre 3300018951 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 41.6663 2.7994 365175035 699731 14 23 54 229 0.0 Metatranscriptome 3300046677 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - G2-R3-B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046677 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3569 19.0504 91791034 205560 110 105 361 340 Unrestricted 36.92 Metatranscriptome 3300008653 *Microbiome Permanent Draft Microbial communities of corn and soybean rhizosphere soil from Ohio, USA Microbial communities of soybean rhizosphere soil from Ohio, USA - Soybean_Powermax_1b Auburn University 3300008653 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Plants Rhizosphere Roots Soil Rhisosphere soil 6426686 25731 487 341 16614 2317 SRX1078289 0.0 Metatranscriptome 3300004513 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 117_HOW13 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004513 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 13593839 28087 138 11 498 21 SRX2780192 Unrestricted 0.0 Metatranscriptome 3300029278 *Microbiome Permanent Draft Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Soil microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B1.ctcc.R1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300029278 Metatranscriptome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes colemanderr@gmail.com Devin Coleman-Derr No Environmental Terrestrial Unclassified Soil Agricultural land field soil 36.3390586 -120.12031 14475400 30004 365 878 2393 2521 0.0 Metatranscriptome 3300004594 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 73 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004594 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 81712577 252185 4730 2159 18111 5045 Unrestricted 0.0 Metatranscriptome 3300024850 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepB_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024850 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 153220914 315656 78 238 1039 1480 SRX4547764 Unrestricted 21.76 Metatranscriptome 3300023676 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 55R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023676 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 52321014 111266 81 48 489 913 SRX4475286 Unrestricted 44.07 Metatranscriptome 3300010179 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0900_B MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010179 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 59295696 132963 704 3 4535 19 SRX2521777, SRX2521778 Unrestricted 0.0 Metatranscriptome 3300018837 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_076 - TARA_N000000871 (ERX1782235-ERR1712073) Canada's Michael Smith Genome Sciences Centre 3300018837 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -20.9514 -35.2273 200441098 481979 20 21 100 402 0.0 Metatranscriptome 3300034680 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_116 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034680 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.91721605 -106.9559947 100618240 239780 68 73 1533 613 SRX8239220 Unrestricted 17.73 Metatranscriptome 3300003574 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA Grassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_26 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003574 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes pettridge2@llnl.gov, nuccio1@llnl.gov; pettridge2@llnl.gov Jennifer Pett-Ridge, Erin Nuccio; Jennifer Pett-Ridge No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.972988 -123.116539 100275819 295958 457 239 1478 2178 SRX2563405 Unrestricted 0.0 Metatranscriptome 3300004535 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 56_HOW8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004535 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 32486012 72398 136 517 421 894 SRX2780063 Unrestricted 0.0 Metatranscriptome 3300041534 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_131 MetaT AgResearch, New Zealand, Mosgeil 3300041534 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 51205818 112295 390 107 2582 224 0.0 Metatranscriptome 3300038453 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Metatranscriptome of lab enriched marine microbial communities from Marineland, Florida, USA - SWPA_R3_TP1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038453 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6475 -82.3464 55192853 118054 135 37 237 205 SRX8669495 Unrestricted 51.72 Metatranscriptome 3300048746 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - CP-10C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048746 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.0477 39227025 95314 24 41 188 112 Unrestricted 40.83 Metatranscriptome 3300009249 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from Amazon river, Brazil - RCM15 University of Georgia 3300009249 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic River Freshwater Unclassified River water 213177736 649522 35 97 733 703 SRX861660 0.0 Metatranscriptome 3300026411 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0925-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026411 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 129694637 214481 11 29 7 29 SRX4796196 Unrestricted 73.9 Metatranscriptome 3300019002 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_110 - TARA_N000001764 (ERX1789384-ERR1719347) Canada's Michael Smith Genome Sciences Centre 3300019002 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -1.8155 -84.629 539234286 1424176 16 124 22 512 0.0 Metatranscriptome 3300028088 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepB_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028088 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 175785935 368647 42 58 214 490 SRX5245488 Unrestricted 28.84 Metatranscriptome 3300021345 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 12015 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021345 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.7468 -122.0193 554942349 1245521 348 138 15974 5553 SRX4010494 Unrestricted 0.0 Metatranscriptome 3300046148 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-24 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046148 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4056 -64.9059 77695295 185887 824 47 1454 596 Unrestricted 24.01 Metatranscriptome 3300019235 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR1_MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019235 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 36.29 139.38 201440727 422044 10 31 9521 295 SRX4809120 Unrestricted 0.0 Metatranscriptome 3300010975 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 corn stover (Eukaryote Community Metatranscriptome) (version 3) (version 2) DOE Joint Genome Institute (JGI) 3300010975 Metatranscriptome Analysis MEGAHIT v. 1.0.4b No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 40.102108 -88.227299 427995326 846554 84 435 310 716 SRX5780594 Unrestricted 0.0 Metatranscriptome 3300018750 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_038 - TARA_N000000046 (ERX1789696-ERR1719423) Canada's Michael Smith Genome Sciences Centre 3300018750 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 19.0359 64.511 204730066 360247 2 30 22 122 0.0 Metatranscriptome 3300018718 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_123 - TARA_N000001994 (ERX1789426-ERR1719437) Canada's Michael Smith Genome Sciences Centre 3300018718 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.8984 -140.3089 106321338 291090 47 50 136 501 0.0 Metatranscriptome 3300010864 *Microbiome Permanent Draft Forest soil eukaryotic communities from Alaska, USA, for a soil warming experiment in a boreal forest Boreal forest soil eukaryotic communities from Alaska, USA - W3-5 Metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010864 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes treseder@uci.edu Kathleen Treseder No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Boreal forest soil 63.883 -145.733 174727183 395022 215 619 9363 6601 SRX3007307 Unrestricted 0.0 Metatranscriptome 3300017047 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Sea in K medium, 15 C, 35 psu salinity and 211 ?mol photons light - Florenciella sp. RCC1007 (MMETSP1324) National Center for Genome Resources 3300017047 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 61.0 1.98333333 27797424 38637 31 1 48 3 0.0 Metatranscriptome 3300024558 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepC_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024558 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 209148498 445596 53 140 715 1056 SRX4547606 Unrestricted 21.62 Metatranscriptome 3300024483 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepB_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024483 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 212833166 455887 52 126 611 1092 SRX4547603 Unrestricted 22.0 Metatranscriptome 3300049122 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 85a (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049122 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.9364 -81.6542 5693285 11367 10 3 29 27 Restricted 96.28 Metatranscriptome 3300036513 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp02_R40 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036513 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 176433199 370097 403 64 822 1011 SRX8837707 Unrestricted 46.1 Metatranscriptome 3300030887 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030887 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 59.9989 10.7903 11142475 22023 167 322 577 1409 SRX5351348 Unrestricted 0.0 Metatranscriptome 3300050703 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae axenic culture microbial communities from LLNL, Livermore, California, USA - f28_d5_W_S43 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050703 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 20240909 23737 3 0 6 4 Restricted 150.59 Metatranscriptome 3300008378 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34697 J. Craig Venter Institute (JCVI) 3300008378 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 60309 263 0 0 9 0 0.0 Metatranscriptome 3300018673 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_048 - TARA_N000000115 (ERX1782433-ERR1712189) Canada's Michael Smith Genome Sciences Centre 3300018673 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -9.4153 66.303 112820917 247794 4 17 36 119 0.0 Metatranscriptome 3300052455 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 8-S25Day28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052455 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 177068424 368052 58 6 175 64 Unrestricted 56.81 Metatranscriptome 3300041868 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_442 MetaT AgResearch, New Zealand, Mosgeil 3300041868 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 15543299 32301 118 108 1005 212 0.0 Metatranscriptome 3300016783 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in f/2 medium with artificial seawater, no silicate, 21 C, 35 psu salinity and 411 ?mol photons light - micromonas sp. RCC472 (MMETSP1084) National Center for Genome Resources 3300016783 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 8.5 -78.22 18915352 17134 6 2 12 2 0.0 Metatranscriptome 3300005570 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser CG13 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005570 Metatranscriptome Analysis megahit v. 0.2.0 No Yes alexander.j.probst@gmail.com, jbanfield@berkeley.edu Alexander Probst, Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 21759362 58836 9298 972 20743 2173 SRX3349045, SRX3349044 Unrestricted 0.0 Metatranscriptome 3300053654 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T4_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053654 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 84454042 183345 74 35 238 151 Unrestricted 0.0 Metatranscriptome 3300010903 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS4_55_TP1_13H Marine Biological Laboratory 3300010903 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 1173419 2504 34 1 254 1 0.0 Metatranscriptome 3300017590 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 18 C, 32 psu salinity and 534 ?mol photons light - Chaetoceros affinis CCMP 159 (MMETSP0092) (SRX549064-SRR1294450) National Center for Genome Resources 3300017590 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 4605750 9199 1 5 8 6 0.0 Metatranscriptome 3300016769 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of hypersaline lake eukaryotic communities from Great Salt Plains Lake, Oklahoma in L1 medium with NH4Cl, 20 C, 32 psu salinity and 477 ?mol photons light - Picochlorum oklahomense CCMP 2329 (MMETSP1161) National Center for Genome Resources 3300016769 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Unclassified hypersaline lake 36.75 -98.2 12332535 14271 27 3 36 10 0.0 Metatranscriptome 3300017484 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from South Pacific Ocean in L1 medium, 22 C, 20 psu salinity and 296 ?mol photons light - Karlodinium veneficum CCMP 2283 (MMETSP1016) National Center for Genome Resources 3300017484 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal -32.2167 -80.7355 80832884 101598 9 2 12 7 0.0 Metatranscriptome 3300037739 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_OW2_C1_D4_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037739 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 91200030 181284 370 1611 2886 4207 SRX8890067 Unrestricted 216.3 Metatranscriptome 3300011022 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 14 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011022 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 14002405 33519 77 254 3816 711 Unrestricted 0.0 Metatranscriptome 3300042026 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Metatranscriptome of seawater microbial communities from Western North Atlantic Ocean - Oce1_SurfR (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042026 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Unclassified Marine Unclassified seawater 36.5136 -74.4162 134797173 286274 641 94 1050 1522 SRX14875839 Unrestricted 15.7 Metatranscriptome 3300010432 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS5_30_TP2_13L Marine Biological Laboratory 3300010432 Metatranscriptome Analysis CLC genomics wb7 released per JGI data release policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933 -130.014 254339 880 27 4 78 11 0.0 Metatranscriptome 3300034772 *Microbiome Permanent Draft Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S84 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034772 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes colin.averill@usys.ethz.ch Colin Averill No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 36.0 -78.0 89401885 198964 8 45 329 215 SRX7619715 Unrestricted 114.96 Metatranscriptome 3300060246 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 22R_SD_T1_R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300060246 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 44418516 109170 244 187 713 1064 Unrestricted 88.17 Metatranscriptome 3300021323 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States - R9.63AS (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021323 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 46.249 -123.986 142099169 301657 110 284 1045 5639 SRX4014798 Unrestricted 0.0 Metatranscriptome 3300017086 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of freshwater eukaryotic communities from Lake Texoma, Oklahoma in f/2 medium with seawater, 18 C, 18 psu salinity and 682 ?mol photons light - Prymnesium parvum Texoma1 (MMETSP0815) National Center for Genome Resources 3300017086 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 33.98 -96.67 35521973 42164 9 7 17 8 0.0 Metatranscriptome 3300056983 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Frasne, France - Sphagnum fallax 8OTC_SF_FR (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056983 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 206257847 438058 195 118 463 581 Unrestricted 55.91 Metatranscriptome 3300042424 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_71_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042424 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 49923374 65324 1 0 10 1 Unrestricted 298.59 Metatranscriptome 3300036535 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRU6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036535 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 59.997 10.7902 72198432 115244 82 16 109 115 SRX8135104 Unrestricted 0.0 Metatranscriptome 3300016752 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in HESNW medium w/o silica, at 23 C, 30 psu salinity and 280 ?mol photons light - Pyrocystis lunula CCCM 517 (MMETSP0229_2) National Center for Genome Resources 3300016752 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 395499 1239 0 1 0 3 0.0 Metatranscriptome 3300032503 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow Y-2 corn stover (Eukaryote Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032503 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 40.102108 -88.227299 99917334 172713 6 56 37 88 SRX5780877 Unrestricted 0.0 Metatranscriptome 3300008770 *Microbiome Permanent Draft Microbial communities of mouse gut induced with colitis from Vienna, Austria Microbial communities of mouse gut induced with colitis from Vienna, Austria - 9973_ACTGT University of Vienna 3300008770 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Stomach Digestive system Forestomach Foregut of mice 16630059 60154 203 1 1548 16 SRX326439 0.0 Metatranscriptome 3300004120 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF238 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004120 Metatranscriptome Analysis megahit v. 0.2.0 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.531427 -72.189946 187456884 597559 98 56 252 367 SRX2014015 Unrestricted 0.0 Metatranscriptome 3300006581 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006581 Metatranscriptome Analysis megahit v. 0.2.0 No Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil 45.54 -73.72 1167882442 3978483 200 235 412 668 SRX2521908 Unrestricted 0.0 Metatranscriptome 3300006680 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP2966 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006680 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 32.08 -17.27 34739842 103243 6139 2601 15630 9609 SRX3299580 Unrestricted 0.0 Metatranscriptome 3300030846 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB5 EcM (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030846 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7585 6.3578 513552212 1536826 13796 2399 27709 7232 SRX3351957 Unrestricted 0.0 Metatranscriptome 3300031678 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031678 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 59.997 10.7902 37020025 60249 17 8 20 60 SRX5808149 Unrestricted 20.26 Metatranscriptome 3300006386 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Oil_01_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006386 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 187189167 500969 570 645 1858 1201 SRX2752004 Unrestricted 0.0 Metatranscriptome 3300055445 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Metatranscriptome of hydrothermal vent plume microbial communities from Gulf of California, Mexico - CTD-FK190211-025-400m-0.65 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300055445 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 23.95663 -108.86187 254297301 410452 81 25 491 205 Restricted 0.0 Metatranscriptome 3300018691 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_100 - TARA_N000001616 (ERX1782222-ERR1712214) Canada's Michael Smith Genome Sciences Centre 3300018691 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -12.991 -95.9893 117191732 286091 10 16 62 343 0.0 Metatranscriptome 3300018590 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_004 - TARA_X000000357 (ERX1782335-ERR1712116) Canada's Michael Smith Genome Sciences Centre 3300018590 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 36.5533 -6.5669 53979301 112533 3 15 12 96 0.0 Metatranscriptome 3300008993 *Microbiome Permanent Draft Microbial communities from seawater in eastern North Pacific Ocean Marine microbial communities from eastern North Pacific Ocean - P1 free-living University of Georgia 3300008993 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ocean water 280387410 752740 66 19 594 755 0.0 Metatranscriptome 3300017255 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from English Channel in f/20 medium with seawater, no silicate, 18 C, 30 psu salinity and 314 ?mol photons light - Alexandrium tamarense CCMP 1771 (MMETSP0378) National Center for Genome Resources 3300017255 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Estuary marine 50.6 4.25 18174634 41250 0 4 0 2 0.0 Metatranscriptome 3300008914 *Microbiome Permanent Draft Eukaryotic communities of quiescent and activated human skeletal muscle stem cells from California, USA Eukaryotic communities of quiescent and activated human skeletal muscle stem cells from California, USA - p38 inhibitor 2 Stanford University 3300008914 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human HuSC Cell culture Unclassified Human skeletal muscle 37.43 -122.17 32868368 72443 0 1 4 5 ERX1052326 0.0 Metatranscriptome 3300047415 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81956e98-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047415 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 390973703 955973 413 241 2255 1470 Unrestricted 30.29 Metatranscriptome 3300007203 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - OCT_B_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007203 Metatranscriptome Analysis megahit v. 0.2.0 No Yes binskeep@montana.edu, binskeep@montana.edu; jim.fredrickson@pnnl.gov William Inskeep, William P. Inskeep; Jim Fredrickson No Environmental Aquatic Unclassified Thermal springs Unclassified Thermal springs 44.534 -110.7978 73453869 228153 1431 71 8735 141 SRX2522146 Unrestricted 0.0 Metatranscriptome 3300031186 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_D6_4mM_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031186 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 19770793 30583 1 0 5 3 SRX5783606 Unrestricted 40.51 Metatranscriptome 3300061830 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 56_controlsoil_3_T5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061830 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 44100240 115556 94 107 810 785 Unrestricted 172.2 Metatranscriptome 3300055152 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP3.2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055152 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 336869240 666219 20 38 195 233 Unrestricted 62.91 Metatranscriptome 3300018565 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS669_3p0_dT J. Craig Venter Institute (JCVI) 3300018565 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 65.73045 22.445047 34189649 73022 1251 667 1749 1412 0.0 Metatranscriptome 3300009606 *Microbiome Permanent Draft Marine eukaryotic communities from various locations to study complex ecological interactions Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M2_3um Metatranscriptome (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009606 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes azworden@mbari.org; twoyke@lbl.gov Alexandra Worden; Tanja Woyke No Environmental Aquatic Oceanic Marine Unclassified Marine 36.6953 -122.3565 648800694 1227557 156 26 1488 670 SRX7203899 Unrestricted 0.0 Metatranscriptome 3300021969 *Microbiome Permanent Draft Anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States Metatranscriptome of anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States - LAC_MetaT_7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021969 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes alvarez@ce.berkeley.edu Lisa Alvarez-Cohen No Engineered Bioreactor Unclassified Anaerobic Unclassified anaerobic bioreactor biomass 37.8719 -122.2585 116416546 236824 7 20 3207 141 SRX4020275 Unrestricted 0.0 Metatranscriptome 3300046441 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_89_Control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046441 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1245 -81.3605 29213800 69211 109 177 880 842 Unrestricted 46.13 Metatranscriptome 3300021190 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from nest - French Guiana - 1_3 mRNA 1_3 mRNA SA University of Luxembourg 3300021190 Metatranscriptome Analysis CLC Genomics Workbench Version 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 5.06224 -53.047407 69901242 233021 1 12 4 38 0.0 Metatranscriptome 3300031147 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_L6_32mM_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031147 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 31178049 44115 5 0 0 2 SRX6408407 Unrestricted 35.99 Metatranscriptome 3300034182 *Microbiome Permanent Draft FORHOT Natural soil warming experiment in Iceland Soil microbial communities from grassland in Hveragerdi, Iceland - GO2-A University of Vienna 3300034182 Metatranscriptome Analysis rnaSPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes craig.herbold@microbial-ecology.net Craig Herbold No Environmental Terrestrial Unclassified Soil Grasslands Soil 64.025 -21.205 1941320316 7858330 167198 16278 791306 53190 0.0 Metatranscriptome 3300023694 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 31R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023694 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 67199695 150368 84 26 557 768 SRX4474671 Unrestricted 40.27 Metatranscriptome 3300004576 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 25_LOW6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004576 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 27987948 70892 1306 36 3740 133 SRX2779912 Unrestricted 0.0 Metatranscriptome 3300048841 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Metatranscriptome of soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR17 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048841 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.3476 -119.2808 25260845 31645 12 0 16 8 Unrestricted 108.62 Metatranscriptome 3300046760 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_97_Fire (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046760 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.2076 -81.3557 45496872 108734 97 121 902 666 Unrestricted 36.29 Metatranscriptome 3300047599 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_7_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047599 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 65651456 110852 2 0 20 2 Restricted 83.33 Metatranscriptome 3300030859 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E6_R_5 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030859 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 446543685 1514929 292 236 530 728 SRX3341592 Unrestricted 0.0 Metatranscriptome 3300041755 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_480 MetaT AgResearch, New Zealand, Mosgeil 3300041755 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 45946447 99350 144 77 1263 172 0.0 Metatranscriptome 3300008822 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of annulated tree boas from Steinhart Aquarium in San Francisco, USA - CAS02_GI University of California, San Francisco 3300008822 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Unclassified Digestive system Unclassified GI 2477930 7685 0 0 1 0 SRX170636 0.0 Metatranscriptome 3300037051 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Growout1_15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037051 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 382859581 811307 728 42 1321 936 SRX8821526 Unrestricted 23.92 Metatranscriptome 3300050697 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae culture inoculated with mixed bacterial community from LLNL, Livermore, California, USA - f22_d5_A_S34 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050697 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 28587725 37940 7 0 10 1 Restricted 155.75 Metatranscriptome 3300016884 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Ligurian Sea in autoclaved artificial seawater, 19 C, 33 psu salinity and 212 ?mol photons light - Condylostoma magnum COL2 (MMETSP0210) National Center for Genome Resources 3300016884 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 43.3 10.2 24757192 28269 3 5 1 5 0.0 Metatranscriptome 3300047433 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 8195852c-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047433 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 287037393 751246 212 190 1154 1135 Unrestricted 24.56 Metatranscriptome 3300030862 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030862 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 59.9989 10.7903 227099731 549794 24 60 167 277 SRX5351409 Unrestricted 0.0 Metatranscriptome 3300028261 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepB_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028261 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 147968909 305371 68 83 324 580 SRX5245515 Unrestricted 26.54 Metatranscriptome 3300019276 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101413AT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019276 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 403268402 920263 196 366 3601 4598 SRX3921396 Unrestricted 0.0 Metatranscriptome 3300008667 *Microbiome Permanent Draft Food microbial communities from the fermentation process of Kimchi from South Korea Food microbial communities from the fermentation process of Kimchi from South Korea - J18 Chung-Ang Univiersity 3300008667 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Fermented vegetables Unclassified Fermented vegetables 10843477 22992 18 4 349 68 0.0 Metatranscriptome 3300009542 *Microbiome Permanent Draft Anaerobic biogas reactor microbial communites from Washington, USA Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2_A SIP RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009542 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes dacb@uw.edu David Beck No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic biogas reactor 47.6525 -122.3049 211437865 377568 11 102 6627 874 SRX2525378 Unrestricted 0.0 Metatranscriptome 3300031735 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from Antarctic Ocean - PS103-5.R2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031735 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified marine -59.0467 0.0779 678987931 1214450 18 2 21 95 SRX5356511 Unrestricted 16.93 Metatranscriptome 3300016909 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in artificial seawater, 22 C, 32 psu salinity and 459 ?mol photons light - Cafeteria roenbergensis E4-10 (MMETSP0942) National Center for Genome Resources 3300016909 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 44.7 -124.2 20455233 20246 20 2 27 1 0.0 Metatranscriptome 3300011287 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S15 O2min_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011287 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 28983917 73984 59 30 10682 1669 SRX3787186 Unrestricted 0.0 Metatranscriptome 3300030627 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO153-ARE095SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030627 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr; fmartin@nancy.inra.fr Francis M. Martin; Francis M. MARTIN No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.321 -71.0886 537301290 1150666 73 82 1440 458 SRX4391344 Unrestricted 0.0 Metatranscriptome 3300031871 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLE2 metaT (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031871 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified Plant litter 49.044 13.617 34562667 75042 70 478 530 2197 SRX3937013, SRX5229517 Unrestricted 0.0 Metatranscriptome 3300049467 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_16 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300049467 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 402695636 885808 322 89 1039 501 Unrestricted 28.05 Metatranscriptome 3300028445 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 61 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300028445 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 20836827 50966 72 173 1436 673 Unrestricted 189.2 Metatranscriptome 3300032689 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_12JUL2016_LR2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032689 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Unclassified Phyllosphere Unclassified phyllosphere 42.39 -85.37 193940830 344995 50 40 79 276 SRX7077712 Unrestricted 98.17 Metatranscriptome 3300030940 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030940 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 59.9979 10.7895 99859700 251979 84 92 455 530 SRX5351389 Unrestricted 0.0 Metatranscriptome 3300018898 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_093 - TARA_N000001292 (ERX1789568-ERR1719317) Canada's Michael Smith Genome Sciences Centre 3300018898 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -34.0614 -73.1066 376524395 709889 0 14 3 71 0.0 Metatranscriptome 3300028183 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0764-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028183 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 282844996 511183 29 32 18 54 SRX5254950 Unrestricted 89.35 Metatranscriptome 3300031024 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLI6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031024 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 59.997 10.7902 15253206 36292 134 181 520 1013 SRX5351305 Unrestricted 0.0 Metatranscriptome 3300005486 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0700_B MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005486 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 35584514 93764 818 14 2543 48 SRX2521677, SRX2521678 Unrestricted 0.0 Metatranscriptome 3300018616 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_138 - TARA_N000003003 (ERX1782367-ERR1711877) Canada's Michael Smith Genome Sciences Centre 3300018616 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 6.3305 -102.9464 59088587 150680 51 22 258 365 0.0 Metatranscriptome 3300003305 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Avena fatua rhizosphere microbial communities - H3_Rhizo_Litter_13 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003305 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes mkfstone@berkeley.edu, nuccio1@llnl.gov; mkfstone@berkeley.edu Mary Firestone, Erin Nuccio; Mary Firestone No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.97364 -123.117453 58078141 171344 438 558 3128 2877 SRX2558069 Unrestricted 0.0 Metatranscriptome 3300045468 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P26SSC2_190918_i (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300045468 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 9542255 21943 13 160 621 713 SRX20650860 Unrestricted 1339.41 Metatranscriptome 3300012727 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES016 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012727 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 191652497 384389 144 88 450 2686 SRX3526948 Unrestricted 0.0 Metatranscriptome 3300046290 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_5_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046290 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 145478611 221036 1 0 29 0 Restricted 135.97 Metatranscriptome 3300017358 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine algae-associated eukaryotic communities from Gulf of Mexico in L1 medium with seawater, 25 C, 27 psu salinity and 552 ?mol photons light - Karenia brevis SP3 (MMETSP0528_2) National Center for Genome Resources 3300017358 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Algae Unclassified Unclassified Unclassified marine algae-associated 91519255 130807 3 1 3 2 SRX551259 0.0 Metatranscriptome 3300003610 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_120m_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003610 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 17021657 41015 174 22 653 134 Unrestricted 0.0 Metatranscriptome 3300038467 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Metatranscriptome of marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_4500m_C5_0cm5cm (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038467 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 35.689 -123.0778 212259864 463887 408 2195 2243 9038 SRX9142022 Unrestricted 63.9 Metatranscriptome 3300031426 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T16 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031426 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 39774527 73959 61 17 103 152 SRX5352184 Unrestricted 16.66 Metatranscriptome 3300004622 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor, Time C-32min-Anaerobic_ RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004622 Metatranscriptome Analysis megahit v. 0.2.0 No Yes tmcmahon@engr.wisc.edu Katherine McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.076217 -89.411742 305718442 643038 220 1328 600 3926 SRX2518137 Unrestricted 0.0 Metatranscriptome 3300046265 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_4_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046265 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 52770569 97458 1 2 33 1 Restricted 159.28 Metatranscriptome 3300017310 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Great Marsh, Delaware in seawater, 23 C, 32 psu salinity and 622 ?mol photons light - Aristerostoma sp. ATCC 50986 (MMETSP0125) National Center for Genome Resources 3300017310 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh marine 29350663 57308 27 3 42 9 0.0 Metatranscriptome 3300052362 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Frauenau, Bavaria, Germany - BW_TH_020R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052362 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.997887 13.360953 37418448 98393 223 219 570 810 Unrestricted 92.27 Metatranscriptome 3300031738 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean - PS103-2.R1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031738 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified marine -49.0129 2.8377 962693306 1802214 20 5 23 138 SRX5356432 Unrestricted 11.35 Metatranscriptome 3300004597 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 35 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004597 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 81165299 274735 5510 2026 18555 4161 Unrestricted 0.0 Metatranscriptome 3300018706 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_153 - TARA_N000002813 (ERX1789488-ERR1719151) Canada's Michael Smith Genome Sciences Centre 3300018706 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 44.074 -16.547 136201356 295317 16 37 43 408 0.0 Metatranscriptome 3300003866 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_30_12H Marine Biological Laboratory 3300003866 Metatranscriptome Analysis CLC Genomics WB7 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 6664332 19461 84 6 147 14 0.0 Metatranscriptome 3300032976 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_07AUG2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032976 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3951 -85.3736 174026333 320482 141 111 237 666 SRX7519902 Unrestricted 38.94 Metatranscriptome 3300025742 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepC_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300025742 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 69050991 145588 40 38 204 287 SRX4547627 Unrestricted 22.62 Metatranscriptome 3300018895 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_011 - TARA_X100000009 (ERX1408504-ERR1336912) Canada's Michael Smith Genome Sciences Centre 3300018895 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 41.6686 2.7996 172731184 693921 79 59 211 638 0.0 Metatranscriptome 3300052384 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_176 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052384 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 114539483 304202 281 189 1473 1067 Unrestricted 93.91 Metatranscriptome 3300031817 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLU5 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031817 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 49.0448 13.618 25335218 53483 142 314 1573 1828 SRX5243273, SRX4455179 Unrestricted 0.0 Metatranscriptome 3300016741 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071410CT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016741 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 411251391 912065 355 605 6976 7054 SRX3781429 Unrestricted 0.0 Metatranscriptome 3300017127 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, no silica, at 16 C, 31 psu salinity and 641 ?mol photons light - Dunaliella tertiolecta CCMP 1320 (MMETSP1127) National Center for Genome Resources 3300017127 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 30968941 32995 1 3 1 18 0.0 Metatranscriptome 3300018860 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_039 - TARA_N000000007 (ERX1782399-ERR1711861) Canada's Michael Smith Genome Sciences Centre 3300018860 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 18.5839 66.4727 195285156 526859 138 24 495 665 0.0 Metatranscriptome 3300029667 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Trp1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029667 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 57202241 108917 7 12 207 64 SRX5356188 Unrestricted 59.84 Metatranscriptome 3300010867 *Microbiome Permanent Draft Forest soil eukaryotic communities from Alaska, USA, for a soil warming experiment in a boreal forest Boreal forest soil eukaryotic communities from Alaska, USA - C3-5 Metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010867 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes treseder@uci.edu Kathleen Treseder No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Boreal forest soil 63.883 -145.733 310781393 719683 223 444 14454 4363 SRX3007269 Unrestricted 0.0 Metatranscriptome 3300017355 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine algae-associated eukaryotic communities from Gulf of Mexico in L1 medium with seawater, 25 C, 35 psu salinity and 742 ?mol photons light - Karenia brevis SP3 (MMETSP0527_2) National Center for Genome Resources 3300017355 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Algae Unclassified Unclassified Unclassified marine algae-associated 89363864 128975 3 1 2 3 SRX551258 0.0 Metatranscriptome 3300030592 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Ab1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030592 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 319351366 692404 195 215 2567 991 SRX4546935 Unrestricted 0.0 Metatranscriptome 3300046268 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_4_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046268 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 42593366 75793 1 1 13 0 Restricted 188.87 Metatranscriptome 3300041996 *Microbiome Permanent Draft Biological soil crust microbial communities from Mojave Desert, California, United States Metatranscriptome of biological soil crust microbial communities from Mojave Desert, CA, USA - CLC_S1_6hours_MT_FICUS_504271 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300041996 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes erik@olemiss.edu Erik Hom No Environmental Terrestrial Soil crust Soil Biological biological soil crusts 34.1736 -115.3888 50705531 102150 238 186 2940 916 SRX14827167 Unrestricted 76.52 Metatranscriptome 3300017608 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 18 C, 32 psu salinity and 534 ?mol photons light - Chaetoceros affinis CCMP 159 (MMETSP0092) (SRX549063-SRR1294449) National Center for Genome Resources 3300017608 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 14647805 31631 24 7 65 9 0.0 Metatranscriptome 3300041537 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_322 MetaT AgResearch, New Zealand, Mosgeil 3300041537 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 43409480 97509 310 76 2625 149 0.0 Metatranscriptome 3300030909 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Mineral N2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030909 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ake.olson@slu.se; francis.martin@inrae.fr Ake Olson; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 436252514 1162260 2325 584 4101 1189 SRX3345097 Unrestricted 0.0 Metatranscriptome 3300003577 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA Grassland soil microbial communities from Hopland, California, USA - Sample H2_Rhizo_32 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003577 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes pettridge2@llnl.gov, nuccio1@llnl.gov; pettridge2@llnl.gov Jennifer Pett-Ridge, Erin Nuccio; Jennifer Pett-Ridge No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.972988 -123.116539 108233021 324365 402 263 1126 1962 SRX2563593 Unrestricted 0.0 Metatranscriptome 3300003308 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Avena fatua rhizosphere microbial communities - H4_Rhizo_Litter_20 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003308 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes mkfstone@berkeley.edu, nuccio1@llnl.gov; mkfstone@berkeley.edu Mary Firestone, Erin Nuccio; Mary Firestone No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.97364 -123.117453 96096585 295537 436 219 1133 1946 SRX2558227 Unrestricted 0.0 Metatranscriptome 3300045465 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P24SSC2_191109_i (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300045465 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 25117511 60223 73 239 1727 1054 SRX20650981 Unrestricted 314.77 Metatranscriptome 3300016940 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in marine media K with soil extract, 18 C, 35 psu salinity and 456 ?mol photons light - Ochromonas sp. CCMP1393 (MMETSP0005) National Center for Genome Resources 3300016940 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 38.702 -72.3667 27601353 31681 28 6 44 15 0.0 Metatranscriptome 3300020092 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate a, metaT Georgia Genomics Facility 3300020092 Metatranscriptome Analysis Trinity 2.06 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 30860842 86265 5193 749 12331 2111 0.0 Metatranscriptome 3300018834 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_067 - TARA_N000000746 (ERX1789722-ERR1719319) Canada's Michael Smith Genome Sciences Centre 3300018834 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -32.1745 17.6991 282668845 481359 4 13 5 82 0.0 Metatranscriptome 3300023703 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023703 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9266 -83.4611 122499509 244304 888 1971 14227 13020 SRX4480130 Unrestricted 37.72 Metatranscriptome 3300022498 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-O (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022498 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 79755168 183432 587 626 9287 4382 SRX4400641 Unrestricted 0.0 Metatranscriptome 3300018568 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_132 - TARA_N000002404 (ERX1789617-ERR1719200) Canada's Michael Smith Genome Sciences Centre 3300018568 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 31.4901 -159.0669 32010582 77040 0 12 1 82 0.0 Metatranscriptome 3300031557 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CBN3_328_20m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031557 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 80.9595 -132.1842 67985320 136979 129 24 170 684 SRX5653493 Unrestricted 0.0 Metatranscriptome 3300016859 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of freshwater eukaryotic communities from Lake Texoma, Oklahoma in f/2 medium with seawater, f/200 phosphorous, 18 C, 18 psu salinity and 626 ?mol photons light - Prymnesium parvum Texoma1 (MMETSP0007) National Center for Genome Resources 3300016859 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 33.98 -96.67 15880498 26306 63 19 142 38 0.0 Metatranscriptome 3300030884 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030884 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 59.9989 10.7903 17739973 37380 220 260 779 1344 SRX5351807 Unrestricted 0.0 Metatranscriptome 3300004789 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SD (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004789 Metatranscriptome Analysis megahit v. 0.2.0 No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 467106894 1289158 1633 841 4195 6839 SRX2518251 Unrestricted 0.0 Metatranscriptome 3300009261 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from Amazon river, Brazil - RCM23 University of Georgia 3300009261 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic River Freshwater Unclassified River water 212731666 667323 53 62 1218 357 SRX864214 0.0 Metatranscriptome 3300017258 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in marine media K with soil extract, 18 C, 36 psu salinity and 435 ?mol photons light - Haptolina ericina CCMP 281 (MMETSP1096) National Center for Genome Resources 3300017258 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 49.6 -140.6166 47580456 67274 12 12 22 11 0.0 Metatranscriptome 3300017210 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from northern Puget Sound, Washington in Ciliate medium, 15 C, 30 psu salinity and 103 ?mol photons light - Favella ehrenbergii Fehren 1 (MMETSP0123) National Center for Genome Resources 3300017210 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 48.634 -122.868 27996183 55977 15 11 19 11 0.0 Metatranscriptome 3300016862 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Arctic in L1 medium with natural Eastern Pacific seawater, no silica (Eastern Pacific), 12.5 C, 35 psu salinity and 476 ?mol photons light - micromonas sp. CCMP2099 (MMETSP1390) National Center for Genome Resources 3300016862 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 76.2833 -74.75 19593400 15649 7 1 6 1 0.0 Metatranscriptome 3300047418 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81957294-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047418 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 215042932 537778 365 259 1699 1498 Unrestricted 47.23 Metatranscriptome 3300017044 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Seto Inland Sea in f/2 medium with seawater, 14 C, 36 psu salinity and 214 ?mol photons light - Skeletonema japonicum CCMP 2506 (MMETSP0593) National Center for Genome Resources 3300017044 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 34.3 132.4 27112487 29436 4 6 5 7 0.0 Metatranscriptome 3300009356 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from the North Atlantic ocean - ACM16 University of Georgia 3300009356 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 66712277 196959 48 154 156 528 0.0 Metatranscriptome 3300042427 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_sp7_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042427 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 45993483 60015 1 0 5 1 Unrestricted 335.18 Metatranscriptome 3300004763 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004763 Metatranscriptome Analysis megahit v. 0.2.0 No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 171579574 482048 4046 2373 11068 8009 SRX2518247 Unrestricted 0.0 Metatranscriptome 3300045923 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Metatranscriptome of soil microbial communities from peatland in Alberta, Canada - SB-EXT 0-10 cm (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300045923 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4579 -114.8736 224795077 546400 27 55 188 234 Unrestricted 12.78 Metatranscriptome 3300041710 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_50 MetaT AgResearch, New Zealand, Mosgeil 3300041710 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 7977694 18223 263 114 1525 151 0.0 Metatranscriptome 3300007729 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDBack_2015_RNA CLC_assembly Marine Biological Laboratory 3300007729 Metatranscriptome Analysis CLC genomics workbench, v. 7.0 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Oceanic Marine Aphotic zone Background seawater 45.9372 -130.082 6797101 12733 915 170 1688 445 0.0 Metatranscriptome 3300010009 *Microbiome Permanent Draft Black Band Disease transitions Microbial communities of stony corals with Black-band disease (BBD) from Carrie Bow Cay Field Station, Belize; BBD Transitions coral #4 sample H4 University of Maryland 3300010009 Metatranscriptome Analysis IDBA-Tran v1.1.1 released per JGI data release policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified marine 16.80288 -88.08213 27010469 54787 7 0 29 11 0.0 Metatranscriptome 3300017487 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Penn Cove, Washington, USA in F/2 medium with seawater, 15 C, 30 psu salinity and 102 ?mol photons light - Mesodinium pulex SPMC105 (MMETSP0467) National Center for Genome Resources 3300017487 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 48.5 -122.6 64430195 105602 17 20 25 28 0.0 Metatranscriptome 3300018942 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_128 - TARA_N000002295 (ERX1782357-ERR1712003) Canada's Michael Smith Genome Sciences Centre 3300018942 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 0.001 -153.6387 366470633 949072 90 29 399 621 0.0 Metatranscriptome 3300041758 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_495 MetaT AgResearch, New Zealand, Mosgeil 3300041758 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 51856631 111777 132 107 1102 277 0.0 Metatranscriptome 3300053657 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T3_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053657 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 97603051 201757 65 26 207 115 Unrestricted 0.0 Metatranscriptome 3300008375 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34698 J. Craig Venter Institute (JCVI) 3300008375 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 14703 21 0 0 0 0 0.0 Metatranscriptome 3300030769 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T35 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030769 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 26295829 50813 93 101 131 372 SRX5353039 Unrestricted 22.71 Metatranscriptome 3300052458 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 28-S43Day28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052458 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 239667153 436617 26 4 94 26 Unrestricted 78.3 Metatranscriptome 3300033541 *Microbiome Permanent Draft Rhizosphere microbial communities from salt marsh grasses in Alabama, United States Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300033541 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes omason@fsu.edu Olivia Mason No Host-associated Plants Rhizosphere Roots Unclassified rhizosphere 30.2619 -88.2383 377770865 802082 443 1386 7629 5421 SRX7525045 Unrestricted 15.79 Metatranscriptome 3300012411 *Microbiome Permanent Draft Bacterial and archaeal communities from various locations to study Microbial Dark Matter (Phase II) Freshwater microbial communities from Lake Alinen Mustajarvi, Finland - AM7a metatranscriptome (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012411 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes rstepanauskas@bigelow.org; sari.peura@slu.se Ramunas Stepanauskas; Sari Peura No Environmental Aquatic Lake Freshwater Unclassified lake water 61.2 25.1 6.05 328750344 624533 86 199 6774 1694 Unrestricted 0.0 Metatranscriptome 3300009349 *Microbiome Permanent Draft Microbial communities of thrombolites from Highborne Cay, Bahamas Microbial communities of thrombolites from Highborne Cay, Bahamas - Zone2_mRNA University of Florida 3300009349 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Saline Non-marine Saline and Alkaline Microbial mats Microbial mats 24.72 -76.82 47660432 149488 853 605 17225 6231 SRX706859 0.0 Metatranscriptome 3300018801 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_040 - TARA_N000000063 (ERX1789476-ERR1719434) Canada's Michael Smith Genome Sciences Centre 3300018801 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 17.5294 67.9576 201921201 442253 20 27 49 265 0.0 Metatranscriptome 3300036432 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5WT15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036432 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 91803111 180954 352 1596 1591 5535 SRX8379538 Unrestricted 44.16 Metatranscriptome 3300052410 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 3_100_8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052410 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 127204214 323308 353 414 4208 2673 Unrestricted 35.78 Metatranscriptome 3300004975 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI054_100m_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004975 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 134308579 415548 2515 2151 7924 8600 Unrestricted 0.0 Metatranscriptome 3300049832 *Microbiome Permanent Draft Biofilm microbial communities of laboratory-scale, methanol-fed denitrifying cultures Lab-enriched, denitrifying biofilm microbial community from biofilm cultures in Laval, Quebec, Canada - 300nitrate23C McGill University and Genome Quebec Innovation Centre 3300049832 Metatranscriptome Analysis Trinity v. 2.9.1 No Yes richard.villemur@iaf.inrs.ca Richard Villemur No Engineered Bioreactor Unclassified Denitrification Unclassified Biofilm 45.54491579 -73.71990935 21763188 56757 19 2 63 4 0.0 Metatranscriptome 3300030752 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E5_S_5 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030752 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 395658719 1431954 86 110 156 257 SRX3341256 Unrestricted 0.0 Metatranscriptome 3300041890 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_495 MetaT AgResearch, New Zealand, Mosgeil 3300041890 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 22775162 47208 112 61 830 159 0.0 Metatranscriptome 3300024555 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepB_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024555 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 194022844 400866 36 235 625 1626 SRX4797200, SRX4797201 Unrestricted 18.15 Metatranscriptome 3300008917 *Microbiome Permanent Draft Microbial communities of nutrient treated water from Blanes Bay, Barcelona, Spain Microbial communities of nutrient treated water from Blanes Bay, Barcelona, Spain - KB1 Sodertorn University 3300008917 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Bay water 41.666 2.8 36416128 146386 503 410 3431 3895 ERX1055473 0.0 Metatranscriptome 3300021245 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from nest from French Guiana - 11-4 mRNA SA University of Luxembourg 3300021245 Metatranscriptome Analysis CLC Genomics Workbench Version 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 5.06224 -53.047407 90456396 280218 1 12 6 38 0.0 Metatranscriptome 3300016846 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, no silica, at 16 C, 34 psu salinity and 760 ?mol photons light - Pavlova sp. CCMP459 (MMETSP1140) National Center for Genome Resources 3300016846 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 19420236 25627 34 9 30 23 0.0 Metatranscriptome 3300047623 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Metatranscriptome of beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - B1_CE2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047623 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.2552 -122.5085 41258830 86144 2 2 127 24 Restricted 97.47 Metatranscriptome 3300053663 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T1_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053663 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 150157226 302978 75 45 239 179 Unrestricted 0.0 Metatranscriptome 3300046081 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-207 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046081 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4604 -64.2162 142439998 326583 508 41 1023 604 Unrestricted 20.81 Metatranscriptome 3300041656 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_50 MetaT AgResearch, New Zealand, Mosgeil 3300041656 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 80560394 182951 317 43 1596 103 0.0 Metatranscriptome 3300036538 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Metatranscriptome of soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_Dec_plot5_rep2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036538 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6541 -80.6298 192069543 429881 529 461 3732 2720 SRX8186923 Unrestricted 43.86 Metatranscriptome 3300016887 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Atlantic Ocean in L1 medium with natural Eastern Pacific seawater, no silica (Eastern Pacific), 21 C, 35 psu salinity and 419 ?mol photons light - micromonas sp. RCC451 (MMETSP1400) National Center for Genome Resources 3300016887 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 20063319 17582 3 10 5 11 0.0 Metatranscriptome 3300050694 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae culture inoculated with mixed bacterial community from LLNL, Livermore, California, USA - f20_d5_A_S30 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050694 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 45866079 69856 5 0 19 8 Restricted 109.4 Metatranscriptome 3300023697 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 3-17_Aug_MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023697 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9301 -83.5517 90506892 185314 877 1860 15950 11643 SRX4480122 Unrestricted 48.47 Metatranscriptome 3300030783 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 3C (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030783 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 189112279 656048 11117 999 22276 2643 SRX2752818 Unrestricted 0.0 Metatranscriptome 3300032913 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_17JUL2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032913 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.3757 152771340 264228 66 49 94 325 SRX7519756 Unrestricted 69.58 Metatranscriptome 3300046123 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-134 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046123 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4508 -64.215 128739958 307377 993 55 1781 636 Unrestricted 21.65 Metatranscriptome 3300018966 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_100 - TARA_N000001614 (ERX1809469-ERR1739845) Canada's Michael Smith Genome Sciences Centre 3300018966 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -12.9723 -96.0122 383786818 1065394 74 82 406 885 0.0 Metatranscriptome 3300028249 *Microbiome Permanent Draft Enriched cultures of PCE-dechlorinating microbial communities from Ithaca, New York, USA Metatranscriptome of enriched culture of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.0 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028249 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes rer26@cornell.edu Ruth Richardson No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified defined medium 42.4447 -76.485 40946204 69660 7 4 279 9 SRX5087091 Unrestricted 103.82 Metatranscriptome 3300010120 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_24_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010120 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 74941076 176280 69 560 15545 4747 Unrestricted 0.0 Metatranscriptome 3300049464 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_12 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300049464 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 563492892 1256799 458 156 1429 646 Unrestricted 41.43 Metatranscriptome 3300036179 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of sediment microbial communities from Prado wetlands, California, USA - CSM_Prado_Oct18_PM2_2.5z2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036179 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 124148917 255622 23 89 204 489 SRX8771072 Unrestricted 45.26 Metatranscriptome 3300030624 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO132-ANR005SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030624 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes fmartin1954@me.com Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2662 -71.2166 656482383 1377271 117 126 2857 1496 SRX4010654 Unrestricted 0.0 Metatranscriptome 3300029275 *Microbiome Permanent Draft Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Soil microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B2.ctno.R1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300029275 Metatranscriptome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes colemanderr@gmail.com Devin Coleman-Derr No Environmental Terrestrial Unclassified Soil Agricultural land Field Soil 36.339058 -120.12031 24555821 55492 226 706 1443 2208 0.0 Metatranscriptome 3300011284 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S15 AAIW_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011284 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 26643158 63306 11 22 947 600 SRX3787149 Unrestricted 0.0 Metatranscriptome 3300003291 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA Grassland soil microbial communities from Hopland, California, USA - Sample H3_Rhizo_37 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003291 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes pettridge2@llnl.gov, nuccio1@llnl.gov; pettridge2@llnl.gov Jennifer Pett-Ridge, Erin Nuccio; Jennifer Pett-Ridge No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.972988 -123.116539 9435105 25257 117 63 230 675 SRX2563618 Unrestricted 0.0 Metatranscriptome 3300060346 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 169R_CW_T3_R4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300060346 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 513618734 1263117 536 369 3409 2283 Restricted 70.61 Metatranscriptome 3300018733 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_040 - TARA_N000000067 (ERX1782259-ERR1711890) Canada's Michael Smith Genome Sciences Centre 3300018733 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 17.4831 68.0026 146375191 339452 19 29 78 404 0.0 Metatranscriptome 3300055300 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP4.2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055300 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 189531172 380567 25 41 222 242 Unrestricted 97.36 Metatranscriptome 3300046611 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-106 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046611 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4426 -64.2061 101797668 231694 884 44 1606 670 Unrestricted 15.84 Metatranscriptome 3300018608 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_125 - TARA_N000002024 (ERX1782181-ERR1712102) Canada's Michael Smith Genome Sciences Centre 3300018608 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.894 -142.631 63973152 154794 8 23 30 204 0.0 Metatranscriptome 3300031636 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031636 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 59.9992 10.7901 45885425 74751 15 12 21 89 SRX5808068 Unrestricted 20.2 Metatranscriptome 3300021941 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-120M (Eukaryote Community Metatranscriptome) (Annotation) DOE Joint Genome Institute (JGI) 3300021941 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 146631567 276135 72 79 146 296 SRX3886388 Unrestricted 0.0 Metatranscriptome 3300028085 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Colum_RepB_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028085 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 142273355 299726 58 68 230 423 SRX5245491 Unrestricted 20.99 Metatranscriptome 3300046469 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_13_Fire (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046469 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1892 -81.3618 674478887 1556294 107 101 1275 595 Unrestricted 23.26 Metatranscriptome 3300046145 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-202 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046145 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4199 -64.1151 182667565 434461 498 30 908 455 Unrestricted 21.88 Metatranscriptome 3300002672 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF139 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002672 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.53312 -72.189707 10161183 29328 91 678 437 2792 SRX2014428 Unrestricted 0.0 Metatranscriptome 3300021348 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021348 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.6907 -122.3448 404827694 908865 363 196 14582 7638 SRX4010500 Unrestricted 0.0 Metatranscriptome 3300019238 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT466_16_1Ra (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019238 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.923 -106.9516 183487232 430030 108 755 6128 5177 SRX4809409 Unrestricted 0.0 Metatranscriptome 3300010978 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 corn stover (Eukaryote Community Metatranscriptome) (version 7) (version 6) DOE Joint Genome Institute (JGI) 3300010978 Metatranscriptome Analysis MEGAHIT v. 1.0.4b No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 40.102108 -88.227299 473080356 965299 103 508 373 811 SRX5780594 Unrestricted 0.0 Metatranscriptome 3300037679 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen9, Rep 1, Chloramphenicol (Eukaryote Community Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037679 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 45417966 41422 4 1 7 3 SRX8381987, SRX8381986 Unrestricted 0.0 Metatranscriptome 3300018715 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_153 - TARA_N000002809 (ERX1789494-ERR1719339) Canada's Michael Smith Genome Sciences Centre 3300018715 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 44.0852 -16.5645 172421267 312391 1 9 3 51 0.0 Metatranscriptome 3300007336 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S7 DCM_A metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007336 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 154271807 402791 4997 2992 12421 9951 SRX3196613 Unrestricted 0.0 Metatranscriptome 3300050370 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T4_3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050370 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 268605303 439233 17 23 121 91 Unrestricted 84.82 Metatranscriptome 3300059671 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_11 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059671 Metatranscriptome Analysis megahit v. 2021-11-18 18:08:57 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 380381690 873749 418 133 1346 577 Unrestricted 0.0 Metatranscriptome 3300042500 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_36E_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042500 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 49075445 67435 0 0 0 0 Unrestricted 234.58 Metatranscriptome 3300012724 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES138 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012724 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 178026755 367392 70 209 788 3581 SRX3011203 Unrestricted 0.0 Metatranscriptome 3300004538 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 68_HOW9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004538 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 34338109 75314 149 539 463 1383 SRX2780064 Unrestricted 0.0 Metatranscriptome 3300000424 *Microbiome Permanent Draft Soil microbial communities from Kansas Great Prairie, USA, amended with BrdU Amended soil microbial communities from Kansas Great Prairies, USA - acetate RNA F2RNA lane4 clc assemly DOE Joint Genome Institute (JGI) 3300000424 Metatranscriptome Analysis Clc-workbench Release to public approved No Yes maude.david@yahoo.fr Maude David No Environmental Terrestrial Loam Soil Grasslands Soil 39.100992 -96.608258 1163884 8122 5 0 12 0 0.0 Metatranscriptome 3300018638 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_135 - TARA_N000002175 (ERX1789495-ERR1719505) Canada's Michael Smith Genome Sciences Centre 3300018638 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 33.008 -121.7579 103201523 192891 0 24 3 126 0.0 Metatranscriptome 3300003863 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_30_13L Marine Biological Laboratory 3300003863 Metatranscriptome Analysis CLC Genomics WB7 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 2829880 9208 80 1 163 8 0.0 Metatranscriptome 3300018703 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_098 - TARA_N000001580 (ERX1782405-ERR1712108) Canada's Michael Smith Genome Sciences Centre 3300018703 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -25.826 -111.7294 111548602 292571 24 64 120 544 0.0 Metatranscriptome 3300006587 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Val_02_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006587 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 95251900 250585 336 178 1447 514 SRX3362001 Unrestricted 0.0 Metatranscriptome 3300023568 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 84R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023568 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 65992531 137681 32 17 294 540 SRX4477376 Unrestricted 24.62 Metatranscriptome 3300025757 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepA_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300025757 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 113675507 242761 39 51 342 445 SRX4547628 Unrestricted 35.71 Metatranscriptome 3300006269 *Microbiome Permanent Draft Prairie soil microbial communities from Kansas, USA, after rainfall Prairie soil microbial communities from Kansas, USA, after rainfall - K20 Oregon State University 3300006269 Metatranscriptome Analysis VELVET 1.2.10, combine 23, 27, 31 released per JGI data release policy No Yes lzeglin@ksu.edu Lydia Zeglin No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.1038 -96.6133 205059 1234 1 2 3 1 0.0 Metatranscriptome 3300011325 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S9 DCM_B metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011325 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 132599237 290073 67 45 1374 2382 SRX3196628 Unrestricted 0.0 Metatranscriptome 3300009230 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from Amazon river, Brazil - RCM8 University of Georgia 3300009230 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic River Freshwater Unclassified River water 410831660 1239249 79 26 695 393 SRX860923 0.0 Metatranscriptome 3300006283 *Microbiome Permanent Draft Prairie soil microbial communities from Kansas, USA, after rainfall Prairie soil microbial communities from Kansas, USA, after rainfall - K15 Oregon State University 3300006283 Metatranscriptome Analysis VELVET 1.2.10, combine 23, 27, 31 released per JGI data release policy No Yes lzeglin@ksu.edu Lydia Zeglin No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.1038 -96.6133 7572480 44106 13 2 42 13 0.0 Metatranscriptome 3300019080 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_110 - TARA_N000001762 (ERX1782368-ERR1712081) Canada's Michael Smith Genome Sciences Centre 3300019080 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -1.9389 -84.611 31767241 64580 1 19 7 55 0.0 Metatranscriptome 3300004508 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 57_HOW8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004508 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 5358049 16104 496 173 2264 505 SRX2780060 Unrestricted 0.0 Metatranscriptome 3300038168 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_M1_C1_D1_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038168 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 62122472 117069 417 1742 4230 4427 SRX9390609 Unrestricted 146.83 Metatranscriptome 3300008600 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-38 University of Hawaii 3300008600 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 2224230 4519 5 4 154 31 0.0 Metatranscriptome 3300011068 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 67 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011068 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 68643393 161496 161 396 11266 2636 Unrestricted 0.0 Metatranscriptome 3300004119 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF210 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004119 Metatranscriptome Analysis megahit v. 0.2.0 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.531427 -72.189946 154538642 519834 111 28 566 247 SRX2013926 Unrestricted 0.0 Metatranscriptome 3300029649 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029649 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.305 -116.2547 31427146 73159 170 415 594 1740 SRX5335933 Unrestricted 27.64 Metatranscriptome 3300008315 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - C7.FECAL.14dpc CCME-COLORADO 3300008315 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 4854949 19246 61 1 1197 9 0.0 Metatranscriptome 3300041993 *Microbiome Permanent Draft Biological soil crust microbial communities from Mojave Desert, California, United States Metatranscriptome of biological soil crust microbial communities from Mojave Desert, CA, USA - LAC_S1_18hours_MT_FICUS_504271 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300041993 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes erik@olemiss.edu Erik Hom No Environmental Terrestrial Soil crust Soil Biological biological soil crusts 34.1736 -115.3888 38371519 82469 268 167 2296 703 SRX14827032 Unrestricted 61.83 Metatranscriptome 3300012471 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012471 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 39.2637 -76.0017 67210087 145761 265 397 5804 4932 SRX3007428 Unrestricted 0.0 Metatranscriptome 3300035302 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R1103U12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035302 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0387 26016097 45628 292 736 5293 2268 SRX8235708 Unrestricted 52.07 Metatranscriptome 3300017041 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in modified f/2 medium with seawater, 3 C, 33.6 psu salinity and 126 ?mol photons light - Thalassiothrix antarctica L6-D1 (MMETSP0152) National Center for Genome Resources 3300017041 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -51.83333 -28.66667 31355083 37857 2 1 1 1 0.0 Metatranscriptome 3300030881 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLU5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030881 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 59.9989 10.7903 6938764 13476 114 311 594 1720 SRX5351310 Unrestricted 0.0 Metatranscriptome 3300028282 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - WCR_77 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028282 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 527077919 1038625 318 65 549 897 SRX5172117 Unrestricted 31.57 Metatranscriptome 3300019208 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT231_16_1Ra (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019208 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9225 -106.9515 134370576 325416 96 706 5513 4569 SRX4809327 Unrestricted 0.0 Metatranscriptome 3300052470 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 126-Pos ControlDay28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052470 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 98931048 209011 19 2 65 22 Unrestricted 53.17 Metatranscriptome 3300041914 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_60 MetaT AgResearch, New Zealand, Mosgeil 3300041914 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 8176043 16578 101 117 649 236 0.0 Metatranscriptome 3300023706 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011504AT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023706 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 172218821 334070 272 509 4532 3403 SRX4498831 Unrestricted 36.94 Metatranscriptome 3300032518 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red4_26May_deep (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032518 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 998271516 1688492 16 10 29 162 SRX6410115 Unrestricted 16.44 Metatranscriptome 3300022372 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States - R8.46A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022372 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 46.232 -123.889 49614738 100854 73 106 342 758 SRX4014537 Unrestricted 0.0 Metatranscriptome 3300009735 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from Louisiana Shelf, Gulf of Mexico - GoM_2015_C6C_240_2m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009735 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 28.8679 -90.4764 67934227 127929 204 122 927 2609 Unrestricted 0.0 Metatranscriptome 3300007595 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_T0_6L (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007595 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 61053372 212911 18446 8206 49254 20653 SRX5781221 Unrestricted 0.0 Metatranscriptome 3300048980 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 79 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048980 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.9364 -81.6542 2577006 5241 17 4 33 33 Restricted 82.05 Metatranscriptome 3300049802 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Metatranscriptome of woodchip biofilm microbial communities from lab scale WBRs in New York, USA - hf_drw_p2_t7_h28_prok (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049802 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 109402812 257231 136 126 1351 591 Unrestricted 56.26 Metatranscriptome 3300010192 *Microbiome Permanent Draft Host-associated microbial communities from peat moss Sphagnum species from Minnesota, USA Peat moss associated microbial communities from Sphagnum species from Minnesota, USA - S1T2_Fc - Sphagnum fallax MT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010192 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes joel.kostka@biology.gatech.edu Joel Kostka No Host-associated Plants Unclassified Peat moss Unclassified Peat moss associated 47.5028 -93.4828 142336067 289897 204 439 953 3837 SRX3007391 Unrestricted 0.0 Metatranscriptome 3300032550 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_12SEP2016_LR1 (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300032550 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Unclassified Phyllosphere Unclassified phyllosphere 42.39 -85.37 85396282 144085 36 43 68 231 SRX7077723, SRX7077724 Unrestricted 0.0 Metatranscriptome 3300032651 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red4_26May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032651 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 1066552983 1787444 87 28 96 329 SRX6410111 Unrestricted 17.26 Metatranscriptome 3300018831 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_082 - TARA_N000001386 (ERX1789378-ERR1719149) Canada's Michael Smith Genome Sciences Centre 3300018831 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -47.1863 -58.2902 212847363 480189 8 2 15 93 0.0 Metatranscriptome 3300037740 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_OW2_C1_D5_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037740 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 74298948 142161 414 1815 3155 4578 SRX8890074 Unrestricted 195.73 Metatranscriptome 3300028330 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 76R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028330 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 92818246 196422 152 31 249 619 SRX5112380 Unrestricted 21.1 Metatranscriptome 3300016685 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES029 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016685 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 46.008 -89.701 67912484 139782 179 110 1806 5136 SRX3780234 Unrestricted 0.0 Metatranscriptome 3300010918 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS6_30_TP1_12L Marine Biological Laboratory 3300010918 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 2715587 6171 223 4 499 15 0.0 Metatranscriptome 3300037619 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Metatranscriptome of lab enriched marine microbial communities from Marineland, Florida, USA - SWPA_R4_TP1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037619 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6475 -82.3464 143862874 290255 234 83 490 367 SRX9146674 Unrestricted 51.28 Metatranscriptome 3300031542 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CBN3_331_5m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031542 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 80.9595 -132.1842 83927102 169147 128 31 160 683 SRX5654054 Unrestricted 0.0 Metatranscriptome 3300018775 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS679_0p8 J. Craig Venter Institute (JCVI) 3300018775 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 56.1664 16.378218 113213108 376195 170 42 456 426 0.0 Metatranscriptome 3300009353 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from the North Atlantic ocean - ACM49 University of Georgia 3300009353 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 55948324 166415 63 55 355 404 0.0 Metatranscriptome 3300026417 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepA_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026417 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 104930581 223242 47 47 202 387 SRX4547631 Unrestricted 36.12 Metatranscriptome 3300059510 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 55R_CD_T2_R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059510 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 303454767 756233 569 294 1822 1928 Unrestricted 46.7 Metatranscriptome 3300059611 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_27 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059611 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 250955767 584639 537 190 1975 976 Unrestricted 0.0 Metatranscriptome 3300018957 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_151 - TARA_N000002755 (ERX1782215-ERR1712088) Canada's Michael Smith Genome Sciences Centre 3300018957 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 36.1736 -29.003 531837032 1002761 10 30 60 478 0.0 Metatranscriptome 3300046570 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - G3-R2-A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046570 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3549 19.0438 96065083 225722 256 182 1094 865 Unrestricted 40.45 Metatranscriptome 3300004766 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004766 Metatranscriptome Analysis megahit v. 0.2.0 No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 178393647 585390 7201 6050 24303 21095 SRX2518250 Unrestricted 0.0 Metatranscriptome 3300006602 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006602 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 169099453 577125 11827 11667 37186 43841 SRX3195907 Unrestricted 0.0 Metatranscriptome 3300031361 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_L6_0mM_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031361 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 13761755 22904 0 0 1 6 SRX5783466 Unrestricted 38.24 Metatranscriptome 3300032412 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day5_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032412 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 44434308 77012 5 0 18 7 SRX6857164 Unrestricted 192.33 Metatranscriptome 3300009382 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from Amazon river, Brazil - RCM19 University of Georgia 3300009382 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic River Freshwater Unclassified River water 87225231 252916 45 52 286 124 SRX863246 0.0 Metatranscriptome 3300012380 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012380 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 130667670 301072 81 833 5625 7040 Unrestricted 0.0 Metatranscriptome 3300017185 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Baffin Bay in K medium with sea water and antibiotics, 6 C, 36 psu salinity and 556 ?mol photons light - unclassified eukaryote CCMP 2298 (MMETSP1144) National Center for Genome Resources 3300017185 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 77.0014 -77.2383 27538194 34901 13 13 20 16 0.0 Metatranscriptome 3300036508 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8NP15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036508 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 209263660 438058 626 1957 2425 6106 SRX8379642 Unrestricted 39.05 Metatranscriptome 3300007534 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom. Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel4S_1600h metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300007534 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sgtringe@lbl.gov, rmmckay@bgsu.edu Susannah Tringe, Robert M. McKay No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.69957 -83.2941 318995242 821517 1543 10888 4237 25511 SRX3195526 Unrestricted 0.0 Metatranscriptome 3300052381 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_164 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052381 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 52006791 129575 75 135 823 787 Unrestricted 144.19 Metatranscriptome 3300004800 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004800 Metatranscriptome Analysis megahit v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil Switchgrass rhizosphere and bulk soil 42.3912 -85.383786 715460675 2174579 2027 17840 7812 46399 SRX2705637 Unrestricted 0.0 Metatranscriptome 3300018989 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_152 - TARA_N000002803 (ERX1782326-ERR1711934) Canada's Michael Smith Genome Sciences Centre 3300018989 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine 43.7056 -16.8794 516703269 1198469 197 33 664 852 0.0 Metatranscriptome 3300059674 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_14 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059674 Metatranscriptome Analysis megahit v. 2021-11-19 00:27:17 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 527417388 1187595 381 103 1283 543 Unrestricted 0.0 Metatranscriptome 3300030747 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 12 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030747 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ake.olson@slu.se; francis.martin@inrae.fr Ake Olson; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 167850570 370877 49 57 85 167 SRX3345025 Unrestricted 0.0 Metatranscriptome 3300012686 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES055 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012686 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.041 -89.686 106451916 199751 46 97 845 2745 SRX3010827 Unrestricted 0.0 Metatranscriptome 3300029598 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Leu2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029598 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 42438810 78572 4 1 109 5 SRX5356205 Unrestricted 62.33 Metatranscriptome 3300060325 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Weichs, Bavaria, Germany - PB8_MT_251018 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300060325 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 48.39537892 11.44760761 169401407 353018 18 10 196 18 Unrestricted 0.0 Metatranscriptome 3300016843 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from English Channel in L1 medium with seawater, 14 C, 33 psu salinity and 551 ?mol photons light - unclassified eukaryote RCC 1871 (MMETSP1456) National Center for Genome Resources 3300016843 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 48.75 -3.95 12008672 13101 14 3 9 5 0.0 Metatranscriptome 3300012721 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES139 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012721 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 171520445 354032 89 226 830 4093 SRX3011199 Unrestricted 0.0 Metatranscriptome 3300048098 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P12SS CTRL_191116_i (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048098 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 45507981 111407 110 202 1514 1128 SRX20649945 Unrestricted 220.51 Metatranscriptome 3300011281 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_T0_6R (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011281 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 16169583 43112 87 184 7540 8442 SRX3197683 Unrestricted 0.0 Metatranscriptome 3300043824 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA65 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043824 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Unclassified Soil Unclassified soil 35.7877 -78.6442 112603847 227295 87 210 1674 1608 Unrestricted 52.43 Metatranscriptome 3300003294 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome C0912_C27A4_35 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003294 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 35.7899 -122.3199 18396615 48778 157 13 359 503 SRX2555051 Unrestricted 0.0 Metatranscriptome 3300007250 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 6/11/14 B RNA (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007250 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ebyoung@uwm.edu Erica Young, Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 409024178 1061671 1852 2013 5554 8015 SRX5628637 Unrestricted 0.0 Metatranscriptome 3300008595 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-8 University of Hawaii 3300008595 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 1605663 3099 6 1 109 24 0.0 Metatranscriptome 3300017329 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/20 medium with seawater, no silicate, 19 C, 30 psu salinity and 167 ?mol photons light - Tiarina fusa LIS (MMETSP0472) National Center for Genome Resources 3300017329 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 41.0 -72.0 59758582 104925 24 29 37 48 0.0 Metatranscriptome 3300030621 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Db8 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030621 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 498242121 1088391 175 242 2236 943 SRX4547305 Unrestricted 0.0 Metatranscriptome 3300049461 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_9 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300049461 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 135926319 315373 184 55 431 243 Unrestricted 23.7 Metatranscriptome 3300052328 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_1B2_100118_1351 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052328 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@dbi.udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 105335072 256104 465 132 1081 700 Unrestricted 204.77 Metatranscriptome 2228664014 *Microbiome Permanent Draft Contaminated soil microbial communities from Tipperary, Ireland, in a timber treatment facility Contaminated soil microbial communities from Tipperary, Ireland - enriched with phenanthrene, cDNA isolated at day 31 University of Liverpool 2228664014 Metatranscriptome Analysis released by JGI data releasing policy No Yes mardiana.mohd-ashaari@ucdconnect.ie Mardiana Mohd Ashaari No Environmental Terrestrial Unclassified Soil Contaminated Contaminated soil 52.512199 -8.226278 21141842 52885 5016 0 28728 0 0.0 Metatranscriptome 3300008560 *Microbiome Permanent Draft Microbial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean Microbial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean - CTD-06-48 University of Michigan 3300008560 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vents 8053366 32653 2304 135 9451 714 0.0 Metatranscriptome 3300008661 *Microbiome Permanent Draft Microbial communities of corn and soybean rhizosphere soil from Ohio, USA Microbial communities of corn rhizosphere soil from Ohio, USA - Corn_Control_1a Auburn University 3300008661 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Plants Rhizosphere Roots Soil Rhisosphere soil 5914430 20155 488 164 10894 1675 SRX1078300 0.0 Metatranscriptome 3300018963 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_109 - TARA_N000001796 (ERX1789664-ERR1719481) Canada's Michael Smith Genome Sciences Centre 3300018963 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 2.0218 -84.5652 502340359 1050585 8 144 25 485 0.0 Metatranscriptome 3300032916 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_26JUN2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032916 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3941 -85.3741 166234691 293029 59 27 78 190 SRX7519609 Unrestricted 73.44 Metatranscriptome 3300046126 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-187 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046126 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4199 -64.1151 88392481 210413 371 27 649 226 Unrestricted 23.3 Metatranscriptome 3300030786 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E6_S_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030786 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 530861659 1778508 1240 701 2658 2015 SRX3341604 Unrestricted 0.0 Metatranscriptome 3300046614 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-119 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046614 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4552 -64.1995 105986281 252964 893 39 1483 548 Unrestricted 18.33 Metatranscriptome 3300049527 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_B_0_control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049527 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 196040446 467719 345 218 1754 1347 Unrestricted 61.22 Metatranscriptome 3300016825 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in L1 medium with natural Eastern Pacific seawater, no silica (Eastern Pacific), 23 C, 36 psu salinity and 621 ?mol photons light - Bathycoccus prasinos CCMP 1898 (MMETSP1399) National Center for Genome Resources 3300016825 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 14418067 11733 15 1 13 1 0.0 Metatranscriptome 3300003730 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Thermal spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - Beowulf (BE_D) (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003730 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Thermal spring 44.376 -110.69 25399284 42895 60 0 121 2 SRX2576749 Unrestricted 0.0 Metatranscriptome 3300037057 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp03_R76 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037057 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 391902295 773275 254 75 605 856 SRX8841032 Unrestricted 42.56 Metatranscriptome 3300050691 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae axenic culture microbial communities from LLNL, Livermore, California, USA - f17_d2_W_S26 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050691 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 22429440 23874 4 0 1 3 Restricted 234.53 Metatranscriptome 3300050590 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_9B2_100318_1536 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050590 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 200266299 451539 338 51 615 273 Unrestricted 60.1 Metatranscriptome 3300046084 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-209 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046084 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4604 -64.2162 138687111 317842 598 36 1109 530 Unrestricted 20.86 Metatranscriptome 3300025763 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepA_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300025763 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 214561139 441291 48 73 233 566 SRX4547639 Unrestricted 25.53 Metatranscriptome 3300028267 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Colum_RepC_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028267 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 200944447 429582 81 199 1202 1285 SRX5245749 Unrestricted 28.39 Metatranscriptome 3300009554 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 10m depth; RNA IDBA-UD Marine Biological Laboratory 3300009554 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 6.9 9860760 27022 1927 138 10727 420 0.0 Metatranscriptome 3300018736 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_067 - TARA_N000000750 (ERX1789504-ERR1719154) Canada's Michael Smith Genome Sciences Centre 3300018736 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -32.2188 17.7054 204165527 341732 0 18 2 69 0.0 Metatranscriptome 3300019112 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_072 - TARA_N000000836 (ERX1782266-ERR1711948) Canada's Michael Smith Genome Sciences Centre 3300019112 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.7277 -17.9235 127525222 347665 105 35 471 470 0.0 Metatranscriptome 3300031633 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRU4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031633 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 59.9992 10.7901 38721509 59930 8 8 14 84 SRX5807950 Unrestricted 20.31 Metatranscriptome 3300008868 *Microbiome Permanent Draft Microbial communities from harbor seals stranded along the coast of California, USA Microbial communities from harbor seals stranded along the coast of California, USA - UCD2 Oregon State University 3300008868 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Brain Nervous system Unclassified Harbor seal brain 37.8592 -122.4853 357166672 702242 4 2 138 26 ERX1190715 0.0 Metatranscriptome 3300031615 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRU2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031615 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 59.9982 10.7894 57139012 89606 7 18 23 102 SRX5807952 Unrestricted 19.49 Metatranscriptome 3300018804 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_109 - TARA_N000001738 (ERX1789642-ERR1719208) Canada's Michael Smith Genome Sciences Centre 3300018804 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 1.9958 -84.576 205569889 451321 3 26 7 237 0.0 Metatranscriptome 3300007333 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S12 Surf_B metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007333 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 186463135 519124 3643 2496 9636 8594 SRX3196634 Unrestricted 0.0 Metatranscriptome 3300017270 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Northern Baffin Bay in L1 medium with seawater and antibiotics, 6 C, 36 psu salinity and 395 ?mol photons light - unclassified eukaryote CCMP 2098 (MMETSP0993) National Center for Genome Resources 3300017270 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 76.285 -73.0575 60837953 83443 11 5 10 7 0.0 Metatranscriptome 3300030939 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A9_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300030939 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate/submediterranean forest 42.0 1.0 232058139 557377 308 255 10370 2087 SRX2999432 Unrestricted 0.0 Metatranscriptome 3300039279 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Bb1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300039279 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 571222985 1194194 315 166 1525 888 SRX9404283 Unrestricted 16.45 Metatranscriptome 3300049089 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_21 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300049089 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 220327911 502384 238 52 590 300 Unrestricted 19.39 Metatranscriptome 3300046447 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_93_Fire (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046447 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1213 -81.3619 28975283 66424 49 100 998 503 Unrestricted 53.9 Metatranscriptome 3300012414 *Microbiome Permanent Draft Polar marine prokaryotic and eukaryotic communities from Antarctica during spring seasonal transition Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Arthur Harbor ice station, Antarctica - RNA16.ICE_1m.20151115 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012414 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bowmanjs@ldeo.columbia.edu Jeff Bowman Yes Environmental Aquatic Unclassified Marine Unclassified Polar marine -64.7711 -64.056 459296954 947641 538 250 5207 9425 SRX3379817 Unrestricted 0.0 Metatranscriptome 3300018697 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_102 - TARA_N000001662 (ERX1789701-ERR1719308) Canada's Michael Smith Genome Sciences Centre 3300018697 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -5.2537 -85.2221 132070169 286927 0 2 2 36 0.0 Metatranscriptome 3300030828 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T27 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030828 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 58421207 108446 54 27 62 177 SRX5794571 Unrestricted 30.43 Metatranscriptome 3300010856 *Microbiome Permanent Draft Forest soil eukaryotic communities from Alaska, USA, for a soil warming experiment in a boreal forest Boreal forest soil eukaryotic communities from Alaska, USA - W4-2 Metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010856 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes treseder@uci.edu Kathleen Treseder No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Boreal forest soil 63.883 -145.733 116894489 272092 428 570 33630 5962 SRX3007308 Unrestricted 0.0 Metatranscriptome 3300032790 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_26JUN2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032790 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.3757 116533884 199067 64 38 107 291 SRX7519570 Unrestricted 65.33 Metatranscriptome 3300021880 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-11 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021880 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine -2.0445 -9.4216 51675161 108771 66 87 171 260 SRX6381191 Unrestricted 0.0 Metatranscriptome 3300011381 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom. Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel7S_1600h metaT (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300011381 Metatranscriptome Analysis MEGAHIT v. 0.2.0 No Yes rmmckay@bgsu.edu Robert M. McKay No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.69957 -83.2941 313637988 730997 627 12418 2403 22929 SRX3556430 Unrestricted 0.0 Metatranscriptome 3300017229 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Gulf of California (Sea of Cortes) in ASW medium, 20 C and 649 ?mol photons light - Extubocellulus spinifer CCMP 396 (MMETSP0696) National Center for Genome Resources 3300017229 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 31.3172 -113.56 40690988 38056 2 1 2 1 0.0 Metatranscriptome 3300019216 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA - AD_UKC032_MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019216 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 40.3 -88.15 133682064 295741 91 273 4789 1637 SRX4809092 Unrestricted 0.0 Metatranscriptome 3300018522 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_051 - TARA_N000000193 (ERX1782355-ERR1711921) Canada's Michael Smith Genome Sciences Centre 3300018522 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -21.4836 54.3312 18346982 40080 0 15 6 91 0.0 Metatranscriptome 3300019199 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019199 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 3.8381 -73.3194 120156909 281604 494 333 56249 1934 SRX3939484 Unrestricted 0.0 Metatranscriptome 3300053651 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T1_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053651 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 91459006 187905 31 13 226 64 Unrestricted 391.4 Metatranscriptome 3300016939 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater and 14nM iron, 19 C, 35 psu salinity and 614 ?mol photons light - Thalassiosira weissflogii CCMP 1010 (MMETSP1416) National Center for Genome Resources 3300016939 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.0 -65.0 31658817 31617 3 2 2 3 0.0 Metatranscriptome 3300009563 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 5, Depth 6m; RNA IDBA-UD Marine Biological Laboratory 3300009563 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 6.53 124340839 256988 509 101 1554 275 0.0 Metatranscriptome 3300017481 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from South Pacific Ocean in L1 medium, 22 C, 20 psu salinity and 674 ?mol photons light - Karlodinium veneficum CCMP 2283 (MMETSP1017) National Center for Genome Resources 3300017481 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal -32.2167 -80.7355 76299076 99394 8 10 3 8 0.0 Metatranscriptome 3300006584 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Met_01_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006584 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 90316384 236179 336 432 1606 963 SRX3362191 Unrestricted 0.0 Metatranscriptome 3300016828 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in Standard Aquil medium with 100 uM EDTA, 12 C, 32 psu salinity and 763 ?mol photons light - Chaetoceros sp. UNC1202 (MMETSP1429) National Center for Genome Resources 3300016828 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 48.816 -128.666 15499668 24431 41 13 85 17 0.0 Metatranscriptome 3300008656 *Microbiome Permanent Draft Microbial communities of corn and soybean rhizosphere soil from Ohio, USA Microbial communities of soybean rhizosphere soil from Ohio, USA - Soybean_Control_1b Auburn University 3300008656 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Plants Rhizosphere Roots Soil Rhisosphere soil 7258994 28931 669 267 18866 2194 SRX1078293 0.0 Metatranscriptome 3300004516 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 93_HOW11 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004516 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 14821826 32011 260 12 922 56 SRX2725652 Unrestricted 0.0 Metatranscriptome 3300023673 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLU4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023673 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 49.0427 13.6161 9295372 18509 42 157 920 1098 SRX4455166 Unrestricted 71.99 Metatranscriptome 3300032079 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen2, Rep 1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032079 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 7160641 12943 4 0 6 0 SRX7516958, SRX7516959 Unrestricted 0.0 Metatranscriptome 3300042421 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_38E_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042421 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 42009015 53306 0 0 12 1 Unrestricted 260.39 Metatranscriptome 3300028554 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 3A (Eukaryote Community Metatranscriptome) (v9) (version 9) DOE Joint Genome Institute (JGI) 3300028554 Metatranscriptome Analysis MEGAHIT v. 1.0.4b No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 497811107 1204369 5222 665 14326 1640 SRX2752796 Unrestricted 0.0 Metatranscriptome 3300030825 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T29 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030825 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 27435376 49258 30 11 48 91 SRX5794610 Unrestricted 14.84 Metatranscriptome 3300048743 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Metatranscriptome of hydrothermal vent fluid microbial communities from North Pacific Ocean - A5006-insitu (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048743 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 9.838 -104.2914 66849702 154454 85 146 1193 727 Unrestricted 71.7 Metatranscriptome 3300007758 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDPlume_2015_DNA CLC_assembly Marine Biological Laboratory 3300007758 Metatranscriptome Analysis CLC genomics workbench, v. 7.0 released by Caroline Fortunato No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Hydrothermal plume 45.9372 -130.082 222224804 394471 78 34 138 53 0.0 Metatranscriptome 3300008865 *Microbiome Permanent Draft Microbial communities from harbor seals stranded along the coast of California, USA Microbial communities from harbor seals stranded along the coast of California, USA - com6 Oregon State University 3300008865 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Brain Nervous system Unclassified Harbor seal brain 37.8592 -122.4853 413100300 738042 1 2 98 22 ERX1190726 0.0 Metatranscriptome 3300031618 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_L6_16mM_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031618 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 16883404 27635 0 0 0 4 SRX5783479 Unrestricted 48.87 Metatranscriptome 3300009589 *Microbiome Permanent Draft Anaerobic biogas reactor microbial communites from Washington, USA Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_B SIP RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009589 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes dacb@uw.edu David Beck No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic biogas reactor 47.6525 -122.3049 194439235 354586 14 82 9146 2696 SRX2525377 Unrestricted 0.0 Metatranscriptome 3300052343 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Metatranscriptome of soil microbial communities from peatland in Alberta, Canada - SB-09-mossy 0-10 cm (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052343 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4741 -114.8678 16697554 43679 355 348 1165 1697 Restricted 181.24 Metatranscriptome 3300041531 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_15 MetaT AgResearch, New Zealand, Mosgeil 3300041531 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 55921598 124826 200 55 1367 121 0.0 Metatranscriptome 3300003571 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA Grassland soil microbial communities from Hopland, California, USA - Sample H2_Bulk_35 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003571 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes pettridge2@llnl.gov, nuccio1@llnl.gov; pettridge2@llnl.gov Jennifer Pett-Ridge, Erin Nuccio; Jennifer Pett-Ridge No Environmental Terrestrial Grasslands Soil Bulk soil Avena fatua rhizosphere 38.972988 -123.116539 85957881 256553 456 397 2480 2492 SRX2563588 Unrestricted 0.0 Metatranscriptome 3300003670 *Microbiome Permanent Draft Anaerobic bioreactor microbial communities from different locations in Luxembourg Anaerobic bioreactor microbial communities from a wastewater treatment plant in Schifflange, Luxembourg - sample S2_RNAseq_nonrrna Centre de Recherche Public Gabriel Lippmann 3300003670 Metatranscriptome Analysis IDBA-Tran released per JGI data release policy No Yes calusins@lippmann.lu, magdalena.calusinska@list.lu Magdalena Calusinska No Engineered Bioreactor Unclassified Unclassified Unclassified anaerobic reactor 49.513787 6.01794 7.15 4450970 16077 106 34 906 102 0.0 Metatranscriptome 3300024486 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 RNA GHGlow gp2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024486 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -40.3794 175.6106 907170366 1778044 26 64 961 739 SRX4496817, SRX7509221 Unrestricted 0.0 Metatranscriptome 3300049692 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MT_260218 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049692 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 122377627 252099 16 10 185 30 Unrestricted 29.5 Metatranscriptome 3300026414 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0924-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026414 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 114939655 219873 10 69 4 84 SRX4796387 Unrestricted 105.14 Metatranscriptome 3300026493 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0937-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026493 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 308542029 527137 36 91 29 58 SRX4796409 Unrestricted 55.64 Metatranscriptome 3300050706 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae culture inoculated with mixed bacterial community from LLNL, Livermore, California, USA - f22_d7_A_S46 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050706 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 36025382 45674 4 0 6 4 Restricted 218.07 Metatranscriptome 3300017069 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium (10X Nitrate, 7X phosphorous), at 30 C, 38 psu salinity and 759 ?mol photons light - Tetraselmis striata LANL1001 (MMETSP0819) National Center for Genome Resources 3300017069 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 33878709 40684 4 2 9 2 0.0 Metatranscriptome 3300007233 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 9/18/14 B RNA (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007233 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ebyoung@uwm.edu Erica Young, Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 401779829 1020715 3534 3197 9073 11971 SRX5628706 Unrestricted 0.0 Metatranscriptome 3300017370 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine algae-associated eukaryotic communities from Gulf of Mexico in L1 medium with seawater, 25 C, 27 psu salinity and 750 ?mol photons light - Karenia brevis Wilson (MMETSP0649_2) National Center for Genome Resources 3300017370 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Algae Unclassified Unclassified Unclassified marine algae-associated 95848809 137793 3 4 5 11 0.0 Metatranscriptome 3300030579 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Bnb10 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030579 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 490590323 1057983 164 294 1463 727 SRX4547030 Unrestricted 0.0 Metatranscriptome 3300018676 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_020 - TARA_A100000761 (ERX1782202-ERR1711913) Canada's Michael Smith Genome Sciences Centre 3300018676 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 34.453 14.9538 118334296 261476 33 26 217 366 0.0 Metatranscriptome 3300010861 *Microbiome Permanent Draft Forest soil eukaryotic communities from Alaska, USA, for a soil warming experiment in a boreal forest Boreal forest soil eukaryotic communities from Alaska, USA - C4-5 Metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010861 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes treseder@uci.edu Kathleen Treseder No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Boreal forest soil 63.883 -145.733 153871616 361190 460 611 38149 5963 SRX3007276 Unrestricted 0.0 Metatranscriptome 3300026539 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Metatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_08 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026539 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen 49.6935 -112.8418 790355131 1356591 5 19 72 156 SRX7706008, SRX7706007 Unrestricted 0.0 Metatranscriptome 3300016786 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in K medium, 20 C, 35 psu salinity and 475 ?mol photons light - Picochlorum sp. RCC944 (MMETSP1330) National Center for Genome Resources 3300016786 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -34.53333333 -72.41666667 14671362 17785 28 21 55 64 0.0 Metatranscriptome 3300017052 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Ross Sea in PROV medium, 4 C, 32 psu salinity and 522 ?mol photons light - Ochromonas sp. CCMP1899 (MMETSP1177) National Center for Genome Resources 3300017052 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -77.8333 163.0 28787184 30054 4 4 7 3 0.0 Metatranscriptome 3300052325 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_5A1_100218_1439 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052325 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@dbi.udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 85298289 203901 386 57 819 356 Unrestricted 203.84 Metatranscriptome 3300042023 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Metatranscriptome of estuary water microbial communities from Narragansett Bay, Rhode Island, USA - E3_AmbA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042023 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.9078 -71.5683 330516053 620259 466 233 837 1513 SRX14875670 Unrestricted 15.99 Metatranscriptome 3300010906 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS917_55_12C_TP1_INC3_8 Marine Biological Laboratory 3300010906 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 1842743 3252 112 4 234 9 0.0 Metatranscriptome 3300046222 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_5_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046222 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 27940005 56703 1 0 20 1 Restricted 263.75 Metatranscriptome 3300016747 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071409BT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016747 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 677933727 1400247 132 321 1826 2715 SRX3781208 Unrestricted 0.0 Metatranscriptome 3300036374 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen6, Rep 2, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036374 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 21920275 24030 0 0 4 1 SRX8381189, SRX8381190 Unrestricted 0.0 Metatranscriptome 3300017121 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater and 400nM iron, 10.6uM silica, 19 C, 35 psu salinity and 656 ?mol photons light - Thalassiosira weissflogii CCMP 1010 (MMETSP1409) National Center for Genome Resources 3300017121 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.0 -65.0 32203513 32713 2 1 1 1 0.0 Metatranscriptome 3300060243 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 1R_CW_T1_R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300060243 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 78655933 198629 266 211 1058 1234 Unrestricted 74.08 Metatranscriptome 3300048095 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P11SSC1_191119_f (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048095 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 79884349 191763 73 216 1564 1241 SRX20649830 Unrestricted 158.75 Metatranscriptome 3300049709 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MT_050418 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049709 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 99038361 196486 8 14 195 27 Unrestricted 38.77 Metatranscriptome 3300017083 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater and 14nM iron, 19 C, 35 psu salinity and 635 ?mol photons light - Thalassiosira weissflogii CCMP 1010 (MMETSP1420) National Center for Genome Resources 3300017083 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.0 -65.0 31254769 31440 1 1 2 1 0.0 Metatranscriptome 3300007215 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S12 DCM_B metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007215 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 98130579 281585 4483 2583 7856 7480 SRX3196639 Unrestricted 0.0 Metatranscriptome 3300005390 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_2300_B MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005390 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 38118374 93937 1238 10 3584 49 SRX2521681, SRX2521682 Unrestricted 0.0 Metatranscriptome 3300004591 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 15_LOW5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004591 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 60829165 165922 1896 70 5439 112 SRX2779777 Unrestricted 0.0 Metatranscriptome 3300056986 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Frasne, France - Sphagnum magellanicum 5C_MAG_FR (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056986 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 240313806 520370 208 116 518 512 Unrestricted 56.17 Metatranscriptome 3300052779 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 3_100_14 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052779 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 105728744 274876 240 279 1636 1668 Unrestricted 41.77 Metatranscriptome 3300030843 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB2 EcM (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030843 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7184 6.3471 454261511 1258019 5142 2031 9793 5890 SRX3351266 Unrestricted 0.0 Metatranscriptome 3300008598 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-40 University of Hawaii 3300008598 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 1735867 3412 3 1 162 29 0.0 Metatranscriptome 3300012785 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES011 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012785 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 45771876 97405 245 77 4257 2057 SRX3526964 Unrestricted 0.0 Metatranscriptome 3300010915 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS917_55_12C_TP1_INC3_9 Marine Biological Laboratory 3300010915 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 2901246 4844 124 9 851 24 0.0 Metatranscriptome 3300016688 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES053 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016688 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 46.008 -89.701 85884987 169635 55 103 2649 3207 SRX3780036 Unrestricted 0.0 Metatranscriptome 3300006383 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006383 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 163247289 472995 2432 10506 5500 23815 SRX3196373 Unrestricted 0.0 Metatranscriptome 3300006712 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP1602 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006712 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -11.24 -172.63 88391986 288714 1206 2333 3587 5558 SRX3299570 Unrestricted 0.0 Metatranscriptome 3300018778 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_125 - TARA_N000002019 (ERX1789532-ERR1719207) Canada's Michael Smith Genome Sciences Centre 3300018778 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -8.9111 -142.5571 156074498 381034 22 25 66 285 0.0 Metatranscriptome 3300031021 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PO 3A (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031021 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 587242178 1576339 3329 796 6363 3738 SRX2753420 Unrestricted 0.0 Metatranscriptome 3300055147 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP1.2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055147 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 156397653 313571 24 39 186 231 Unrestricted 96.31 Metatranscriptome 3300031791 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLU3 metaT (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031791 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified Plant litter 49.0431 13.617 16356853 31622 70 543 663 2653 SRX3937010, SRX5229515 Unrestricted 0.0 Metatranscriptome 3300010119 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_0_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010119 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 74912064 176182 65 522 13988 4809 Unrestricted 0.0 Metatranscriptome 3300021947 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - G-2016_32 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021947 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment sediment 41.5187 -76.4203 125188328 310111 753 2666 68787 19210 SRX4010385 Unrestricted 0.0 Metatranscriptome 3300059677 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_17 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059677 Metatranscriptome Analysis megahit v. 2021-11-18 20:10:48 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 443854254 1003193 331 101 1153 527 Unrestricted 0.0 Metatranscriptome 3300009738 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from Louisiana Shelf, Gulf of Mexico - GoM_2015_C6C_244_2m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009738 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 28.8679 -90.4764 75729577 135855 152 157 870 3013 Unrestricted 0.0 Metatranscriptome 3300007598 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_B6R_H (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007598 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 66913149 223972 15026 4610 39084 10916 SRX5781217 Unrestricted 0.0 Metatranscriptome 3300026471 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 77R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026471 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 242022823 405970 103 20 145 274 SRX4796135 Unrestricted 24.55 Metatranscriptome 3300046617 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - P3-R2-B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046617 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.0477 354591169 788330 33 51 164 184 Unrestricted 26.08 Metatranscriptome 3300004573 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 22_HOW5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004573 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 28403471 67874 1095 307 2176 801 SRX2779779 Unrestricted 0.0 Metatranscriptome 3300017188 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/4 medium with seawater, at 20 C, 34 psu salinity and 254 ?mol photons light - Pteridomonas danica PT (MMETSP0101) National Center for Genome Resources 3300017188 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 40321382 51588 34 2 66 4 0.0 Metatranscriptome 3300036505 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5NP15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036505 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 80028588 164469 563 1551 3150 5484 SRX8379435 Unrestricted 43.99 Metatranscriptome 3300031169 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_L6_32mM_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031169 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 20554493 32461 4 1 0 5 SRX5783592 Unrestricted 25.25 Metatranscriptome 3300031445 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E5_R_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031445 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 722766463 2071305 563 379 1033 732 SRX3341243 Unrestricted 0.0 Metatranscriptome 3300047436 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81958a18-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047436 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 318075318 814306 257 200 1407 1257 Unrestricted 24.5 Metatranscriptome 3300031874 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLE5 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031874 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 49.0448 13.618 19563815 39257 283 333 2429 1987 SRX4455180, SRX5243274 Unrestricted 0.0 Metatranscriptome 3300010402 *Microbiome Permanent Draft Continental margin sediment microbial communities from various locations Metatranscriptome of continental margin sediment microbial communities from North Pacific Ocean - WA_4_40 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010402 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michaelgraw@gmail.com; rcolwell@coas.oregonstate.edu Michael Graw; Frederick Colwell No Environmental Aquatic Continental margin Marine Sediment Continental margin sediment 47.9299 -125.6406 1468499 3313 3 4 571 39 SRX2525672 Unrestricted 0.0 Metatranscriptome 3300003297 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 19 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003297 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 24264494 68047 75 135 1422 704 Unrestricted 0.0 Metatranscriptome 3300037709 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of photosynthetic mat microbial communities from Mushroom Spring, YNP, Wyoming, United States - 20090730 1220 sample R12cd (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037709 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 138826289 334783 1 0 98 0 SRX9378959 Unrestricted 158.08 Metatranscriptome 3300006369 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling - Hofmockel_1000180-3 ISU MetaT (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300006369 Metatranscriptome Analysis megahit v. 0.2.0 No Yes khof@iastate.edu, kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Agricultural land Soil Unclassified Enriched soil aggregate 42.0266187 -93.6486594 71337158 187608 568 235 1540 478 SRX3341165 Unrestricted 0.0 Metatranscriptome 3300019273 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019273 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 4.0627 -73.195 346293410 832519 936 862 103708 5002 SRX3936995 Unrestricted 0.0 Metatranscriptome 3300009330 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from the North Atlantic ocean - ACM50 University of Georgia 3300009330 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 30783527 94426 13 46 82 224 0.0 Metatranscriptome 3300008649 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.1ob.14.15dpc CCME-COLORADO 3300008649 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 8244342 31513 31 1 556 13 0.0 Metatranscriptome 3300048844 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Metatranscriptome of soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR22 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048844 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.3476 -119.2808 29220718 39987 8 0 15 4 Unrestricted 40.34 Metatranscriptome 3300029600 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Val2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029600 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 53497085 101572 6 9 181 45 SRX5356204 Unrestricted 128.38 Metatranscriptome 3300011328 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S17 250_B metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011328 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 137247266 311288 44 72 4858 2983 SRX3787216 Unrestricted 0.0 Metatranscriptome 3300023691 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 1-17_Aug_MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023691 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 42770437 94988 300 1125 5841 6068 SRX4479803 Unrestricted 66.94 Metatranscriptome 3300009557 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 8m depth; RNA IDBA-UD Marine Biological Laboratory 3300009557 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 6.5 17718468 43182 1753 743 5692 761 0.0 Metatranscriptome 3300028264 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0666-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028264 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 188516404 332959 36 7 24 48 SRX5253459 Unrestricted 82.05 Metatranscriptome 3300042488 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_35E_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042488 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 42995454 54456 1 0 12 0 Unrestricted 321.52 Metatranscriptome 3300018635 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_122 - TARA_N000001943 (ERX1782126-ERR1712207) Canada's Michael Smith Genome Sciences Centre 3300018635 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.996 -139.2815 71119632 192745 113 46 498 614 0.0 Metatranscriptome 3300034383 *Microbiome Permanent Draft FORHOT Natural soil warming experiment in Iceland Soil microbial communities from grassland in Hveragerdi, Iceland - GO4-E University of Vienna 3300034383 Metatranscriptome Analysis rnaSPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes craig.herbold@microbial-ecology.net Craig Herbold No Environmental Terrestrial Unclassified Soil Grasslands Soil 64.025 -21.205 1908888441 7826485 442264 35321 1438555 79530 0.0 Metatranscriptome 3300016881 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Indian Ocean in L1 medium with seawater, 24 C, 33 psu salinity and 580 ?mol photons light - unclassified eukaryote CCMP 2111 (MMETSP1446) National Center for Genome Resources 3300016881 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine -5.4684 75.6186 14115511 17256 25 3 36 3 0.0 Metatranscriptome 3300023565 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 58R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023565 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 41451070 90345 125 53 580 1363 SRX4475285 Unrestricted 62.84 Metatranscriptome 3300026380 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0909-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026380 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 40816814 81047 15 40 116 104 SRX4664313 Unrestricted 95.58 Metatranscriptome 3300005483 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_2300 MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005483 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 26865667 77612 976 58 3009 132 SRX2740064, SRX2740065 Unrestricted 0.0 Metatranscriptome 3300008318 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.12.3OB.15dpc CCME-COLORADO 3300008318 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 11029768 38663 53 5 545 16 0.0 Metatranscriptome 3300018613 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS846_ls3 J. Craig Venter Institute (JCVI) 3300018613 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 45776576 148492 57 25 123 235 0.0 Metatranscriptome 3300032666 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red3_26May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032666 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 749740148 1346094 10 6 28 123 SRX6410043 Unrestricted 20.7 Metatranscriptome 3300008911 *Microbiome Permanent Draft Eukaryotic communities of quiescent and activated human skeletal muscle stem cells from California, USA Eukaryotic communities of quiescent and activated human skeletal muscle stem cells from California, USA - Activated 1 Stanford University 3300008911 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human HuSC Cell culture Unclassified Human skeletal muscle 37.43 -122.17 30911661 66824 0 2 8 6 ERX1052323 0.0 Metatranscriptome 3300046731 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_3_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046731 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 64971444 101768 1 0 14 0 Restricted 230.15 Metatranscriptome 3300028186 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0950-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028186 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 263625599 480302 36 29 29 72 SRX5244917 Unrestricted 82.45 Metatranscriptome 3300011090 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 69 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011090 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 176907124 392631 220 555 17752 3600 Unrestricted 0.0 Metatranscriptome 3300019205 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA - AD_UKC045_MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019205 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 40.12 -87.63 146248898 317724 78 238 9634 4297 SRX3903286 Unrestricted 0.0 Metatranscriptome 3300019032 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_066 - TARA_N000000805 (ERX1782188-ERR1712216) Canada's Michael Smith Genome Sciences Centre 3300019032 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -34.9449 17.9189 831428380 1823367 198 43 840 1357 0.0 Metatranscriptome 3300018694 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_064 - TARA_N000000539 (ERX1782273-ERR1712042) Canada's Michael Smith Genome Sciences Centre 3300018694 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -29.5018 37.9887 141350349 290791 2 50 20 285 0.0 Metatranscriptome 3300012417 *Microbiome Permanent Draft Polar marine prokaryotic and eukaryotic communities from Antarctica during spring seasonal transition Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 72hr light incubation - RNA13.B_72.20151113 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012417 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bowmanjs@ldeo.columbia.edu Jeff Bowman Yes Environmental Aquatic Unclassified Marine Unclassified Polar marine -64.775 -64.053 529162703 1088604 1021 376 6128 9840 SRX3379699 Unrestricted 0.0 Metatranscriptome 3300046444 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_9_Fire (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046444 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1915 -81.3585 62684528 156970 88 111 750 551 Unrestricted 24.6 Metatranscriptome 3300031423 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_148 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031423 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92045766 -106.94845279 68173602 165676 603 304 3260 1752 SRX8377251 Unrestricted 23.75 Metatranscriptome 3300041504 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_8 MetaT AgResearch, New Zealand, Mosgeil 3300041504 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Unclassified Roots Unclassified White clover root -43.648506 172.343549 13447657 23037 146 147 458 188 0.0 Metatranscriptome 3300004505 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 29 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004505 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 43195218 154222 3697 1566 12975 3323 Unrestricted 0.0 Metatranscriptome 3300038449 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil microbial communities from Duke University greenhouse, North Carolina, United States - H1 wSuillus Control (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038449 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Greenhouse Soil Unclassified soil 36.0 -78.0 165749585 322288 23 72 219 524 SRX9172564 Unrestricted 77.03 Metatranscriptome 3300018807 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_131 - TARA_N000002356 (ERX1789611-ERR1719493) Canada's Michael Smith Genome Sciences Centre 3300018807 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 22.7091 -158.0247 186651546 451691 1 35 13 276 0.0 Metatranscriptome 3300038165 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_OW2_C1_D6_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038165 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 56191087 121718 218 124 2772 382 SRX9390607 Unrestricted 264.41 Metatranscriptome 3300024570 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_UVDOM_RepB_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024570 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 313738276 648681 97 138 1005 1560 SRX4547762 Unrestricted 18.0 Metatranscriptome 3300011065 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 11 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011065 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 65378917 156421 189 222 12721 1493 Unrestricted 0.0 Metatranscriptome 3300036573 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metataranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0817S12re (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036573 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0388 240658259 496900 85 256 1743 1064 SRX8669748 Unrestricted 20.04 Metatranscriptome 3300032966 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_15MAY2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032966 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3941 -85.3741 103243536 173443 13 9 20 58 SRX7519521 Unrestricted 58.18 Metatranscriptome 3300018913 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_066 - TARA_N000000805 (ERX1782451-ERR1712205) Canada's Michael Smith Genome Sciences Centre 3300018913 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -34.9449 17.9189 251905434 708816 84 13 345 676 0.0 Metatranscriptome 3300004551 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 79_HOW10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004551 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 50923347 111342 275 396 872 658 SRX2725252 Unrestricted 0.0 Metatranscriptome 3300029701 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029701 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 233463865 565033 205 327 1064 2154 SRX5337843, SRX5337844 Unrestricted 84.43 Metatranscriptome 3300046303 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_6_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046303 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 49312033 83206 1 2 20 1 Restricted 157.26 Metatranscriptome 3300008558 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - D12.FECAL.14dpc CCME-COLORADO 3300008558 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 6664731 24360 52 1 765 7 0.0 Metatranscriptome 3300004618 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 55 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004618 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 165052027 473322 9981 3374 38114 7556 Unrestricted 0.0 Metatranscriptome 3300018994 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_098 - TARA_N000001586 (ERX1789578-ERR1719368) Canada's Michael Smith Genome Sciences Centre 3300018994 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -25.8073 -111.7364 651235481 1301581 4 52 10 209 0.0 Metatranscriptome 3300036811 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp01_R10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036811 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 271610864 556342 716 118 1378 2027 SRX8835161 Unrestricted 25.4 Metatranscriptome 3300018870 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_152 - TARA_N000002791 (ERX1789585-ERR1719426) Canada's Michael Smith Genome Sciences Centre 3300018870 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 43.7056 -16.8794 248762261 555127 9 1 21 101 0.0 Metatranscriptome 3300032446 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day14_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032446 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 38863966 63119 8 1 25 9 SRX7582836 Unrestricted 248.9 Metatranscriptome 3300009757 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from Louisiana Shelf, Gulf of Mexico - GoM_2015_C6C_205_2m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009757 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 28.8679 -90.4764 132476301 243116 181 256 1124 4696 Unrestricted 0.0 Metatranscriptome 3300010085 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_0_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010085 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 47446399 106476 81 678 5620 5079 Unrestricted 0.0 Metatranscriptome 3300002687 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_200m_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002687 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 31187935 75280 120 49 583 766 Unrestricted 0.0 Metatranscriptome 3300019251 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019251 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 4.0627 -73.195 185195752 492676 1318 1603 191256 8933 SRX3936994 Unrestricted 0.0 Metatranscriptome 3300017204 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no Na2SiO3, 25 C, 34 psu salinity and 599 ?mol photons light - Symbiodinium sp. Mp (MMETSP1123) National Center for Genome Resources 3300017204 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 31102934 54829 27 9 36 7 0.0 Metatranscriptome 3300032487 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-2 rumen fluid (Eukaryote Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032487 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 40.102108 -88.227299 149134353 242976 10 65 50 97 SRX5780729 Unrestricted 0.0 Metatranscriptome 3300009864 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 5, surface; RNA IDBA-UD Marine Biological Laboratory 3300009864 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 7.65 22262525 55171 138 109 694 222 0.0 Metatranscriptome 3300046630 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-176 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046630 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4872 -64.23 175546519 403426 1289 70 2290 1055 Unrestricted 16.26 Metatranscriptome 3300046278 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_4_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046278 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 27641457 41226 1 2 20 1 Restricted 237.75 Metatranscriptome 3300002646 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_10m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002646 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 3178696 8734 11 12 43 240 Unrestricted 0.0 Metatranscriptome 3300031039 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 6C (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031039 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 319209043 1014234 18656 1004 40214 3204 SRX2752868 Unrestricted 0.0 Metatranscriptome 3300010877 *Microbiome Permanent Draft Forest soil eukaryotic communities from Alaska, USA, for a soil warming experiment in a boreal forest Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010877 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes treseder@uci.edu Kathleen Treseder No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Boreal forest soil 63.883 -145.733 721611206 1730733 156 311 8237 3328 SRX3007306 Unrestricted 0.0 Metatranscriptome 3300017092 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in Prov 50 medium, 20 C, 33 psu salinity and 536 ?mol photons light - Pterosperma sp. CCMP1384 (MMETSP1438) National Center for Genome Resources 3300017092 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 0.0 -90.8333 22854399 31696 1 1 4 1 0.0 Metatranscriptome 3300029677 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Leu2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029677 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 71501824 137622 13 12 208 58 SRX5356196 Unrestricted 97.6 Metatranscriptome 3300003289 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Avena fatua rhizosphere microbial communities - H4_Rhizo_Litter_19 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003289 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes mkfstone@berkeley.edu, nuccio1@llnl.gov; mkfstone@berkeley.edu Mary Firestone, Erin Nuccio; Mary Firestone No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.97364 -123.117453 7043118 18012 80 66 145 682 SRX2558221 Unrestricted 0.0 Metatranscriptome 3300010249 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0700 MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010249 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 91590924 189204 4910 796 26921 2488 SRX2521786, SRX2521787 Unrestricted 0.0 Metatranscriptome 3300028120 *Microbiome Permanent Draft Enriched cultures of PCE-dechlorinating microbial communities from Ithaca, New York, USA Metatranscriptome of enriched cultures of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.SFe36 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028120 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes rer26@cornell.edu Ruth Richardson No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified defined medium 42.4447 -76.485 54586245 81179 9 3 201 3 SRX5087131 Unrestricted 97.55 Metatranscriptome 3300003567 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from the University of North Carolina, USA - metaT NBMF1_04_fullP_mix3_d1 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003567 Metatranscriptome Analysis rnnotator v. 3.3.1 Reverted to private per Tijana Glavina del Rio (Oct 2014) No Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9082 -79.0499 58086135 88265 0 0 0 0 SRX2555530, SRX2555529 Unrestricted 0.0 Metatranscriptome 3300009317 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from the North Atlantic ocean - ACM33 University of Georgia 3300009317 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 7932201 25167 3 42 33 112 0.0 Metatranscriptome 3300018935 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_135 - TARA_N000002175 (ERX1789599-ERR1719494) Canada's Michael Smith Genome Sciences Centre 3300018935 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 33.008 -121.7579 319879661 598401 0 40 7 183 0.0 Metatranscriptome 3300046099 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-107 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046099 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4426 -64.2061 68585794 159175 734 52 1166 762 Unrestricted 20.47 Metatranscriptome 3300032127 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB9_Tmax_529 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032127 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 77.9995 -150.0065 346405490 724066 176 73 821 1471 SRX6422225 Unrestricted 29.85 Metatranscriptome 3300005233 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI054_135m_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005233 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 150947012 394769 1188 487 4970 1349 Unrestricted 0.0 Metatranscriptome 3300018578 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_123 - TARA_N000001998 (ERX1782118-ERR1711914) Canada's Michael Smith Genome Sciences Centre 3300018578 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.8932 -140.2879 36283558 81208 0 5 5 61 0.0 Metatranscriptome 3300031591 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031591 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 59.9982 10.7894 34170829 54011 16 20 23 73 SRX5808072 Unrestricted 26.22 Metatranscriptome 3300031690 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRI1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031690 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 59.9979 10.7895 42935031 65980 8 11 20 63 SRX5807946 Unrestricted 25.34 Metatranscriptome 3300020210 *Microbiome Permanent Draft Metatranscriptome of freshwater microbial communities within cyanobacterial aggregates from lake Taihu, China Freshwater microbial communities within cyanobacterial aggregates from lake Taihu, China - 10_4_0:00 total sequence Beijing Novogene Bioinformatics Technology Co., Ltd 3300020210 Metatranscriptome Analysis Trinity v2.4 released by JGI data releasing policy No Yes hycai@niglas.ac.cn haiyuan cai No Environmental Aquatic Lake Freshwater Unclassified freshwater 31.3 120.11 41446611 86482 36 10 16 158 0.0 Metatranscriptome 3300054671 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_CL_002R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300054671 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0544 10.45241 209879670 490843 598 479 2103 2302 Unrestricted 39.43 Metatranscriptome 3300008850 *Microbiome Permanent Draft Microbial communities from dairy cow rumen, for metatranscriptome studies Microbial communities from dairy cow rumen, for metatranscriptome studies - 6021_rapeseed oil diet Aarhus University 3300008850 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Stomach Digestive system Rumen Holstein breed cow rumen 20720340 98247 524 49 6406 191 SRX196410 0.0 Metatranscriptome 3300030544 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Ab3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030544 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 17538978 30912 11 33 281 124 SRX4546938 Unrestricted 0.0 Metatranscriptome 3300016872 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in F/2 medium with seawater, 4nM Fe, 12.5um EDTA, 20 C, 35 psu salinity and 390 ?mol photons light - Thalassiosira rotula GSO102 (MMETSP0911) National Center for Genome Resources 3300016872 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 48.629353 -122.957542 17632210 26936 34 8 39 11 0.0 Metatranscriptome 3300030985 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T23 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030985 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 42253093 85184 96 90 96 394 SRX5794485 Unrestricted 24.94 Metatranscriptome 3300010141 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_8_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010141 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 122256678 287069 42 402 4932 3649 Unrestricted 0.0 Metatranscriptome 3300036551 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen6, Rep 2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036551 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 70075798 105420 3 0 81 0 SRX8382061 Unrestricted 51.05 Metatranscriptome 3300003714 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003714 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 8238042 16750 244 704 577 1806 SRX2568517 Unrestricted 0.0 Metatranscriptome 3300036650 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Growout1_14 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036650 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 273128490 577292 886 62 1775 1472 SRX8821485 Unrestricted 19.61 Metatranscriptome 3300000338 *Microbiome Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - metatranscriptome cDNA-P1 DOE Joint Genome Institute (JGI) 3300000338 Metatranscriptome Analysis No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 156354 745 8 13 520 27 0.0 Metatranscriptome 3300029833 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Pro1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029833 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 51484420 102582 6 10 137 57 SRX5356171 Unrestricted 77.23 Metatranscriptome 3300008818 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of annulated tree boas from Steinhart Aquarium in San Francisco, USA - CAS02_Brain University of California, San Francisco 3300008818 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Brain Nervous system Unclassified Brain 8567741 23142 0 0 0 0 SRX170629 0.0 Metatranscriptome 3300016988 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Long Island Sound grown at 10 C, 30 psu salinity and 439 ?mol photons light - Heterosigma akashiwo CCMP 452 (MMETSP0895_2) National Center for Genome Resources 3300016988 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 41.0 -73.0 14137104 25098 4 6 3 7 0.0 Metatranscriptome 3300049094 *Microbiome Permanent Draft Soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA Metatranscriptome of soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA - 5004_C_N0_69 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049094 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 42.013 -93.743 50389287 120585 103 145 724 871 Unrestricted 71.51 Metatranscriptome 3300008696 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-27 University of Hawaii 3300008696 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 4752080 8991 7 1 222 45 0.0 Metatranscriptome 3300019162 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU3 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019162 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 49.0431 13.617 13550510 30104 15 153 432 779 SRX3937241 Unrestricted 0.0 Metatranscriptome 3300032733 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Amb12_26May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032733 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 1094220831 1815385 14 3 34 174 SRX6411422 Unrestricted 0.0 Metatranscriptome 3300052744 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_182 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052744 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 87974452 235574 244 184 1040 1058 Unrestricted 110.3 Metatranscriptome 3300044944 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P34SSC2_190917_c (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300044944 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 57390186 137447 104 247 1534 1265 SRX20650848 Unrestricted 136.07 Metatranscriptome 3300042571 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Metatranscriptome of estuarine water microbial communities from San Francisco Bay, California, United States - Oct18_FB_1_27D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042571 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 37.6183 -122.2916 28395214 63727 148 65 308 583 Unrestricted 49.32 Metatranscriptome 3300021920 *Microbiome Permanent Draft Anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States Metatranscriptome of anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States - LAC_MetaT_5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021920 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes alvarez@ce.berkeley.edu Lisa Alvarez-Cohen No Engineered Bioreactor Unclassified Anaerobic Unclassified anaerobic bioreactor biomass 37.8719 -122.2585 90141637 250396 1 8 676 70 SRX4020294 Unrestricted 0.0 Metatranscriptome 3300036349 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10NT15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036349 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 20616473 38279 339 1368 4591 5246 SRX8378993 Unrestricted 52.05 Metatranscriptome 3300031856 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen2, Rep 2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031856 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 15878849 25911 8 0 30 3 SRX5359141 Unrestricted 25.93 Metatranscriptome 3300009903 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 7, 3m depth; RNA IDBA-UD Marine Biological Laboratory 3300009903 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 8.2 6815191 23680 211 54 695 227 0.0 Metatranscriptome 3300019159 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLE1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019159 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified Plant litter 49.043 13.6183 12178725 25022 23 334 616 2261 SRX3937012, SRX5229521 Unrestricted 0.0 Metatranscriptome 3300004965 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 17 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004965 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 58633197 201414 2945 1161 11431 2673 Unrestricted 0.0 Metatranscriptome 3300009214 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from the North Atlantic ocean - ACM51 University of Georgia 3300009214 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 145793537 457913 61 71 328 579 0.0 Metatranscriptome 3300029806 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities - laboratory nest - Bondy - E-ctrl University of Luxembourg 3300029806 Metatranscriptome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 48.913957 2.485499 6273259 21732 1 2 21 14 0.0 Metatranscriptome 3300016720 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from English Channel in f/20 medium with seawater, no silicate, 18 C, 30 psu salinity and 317 ?mol photons light - Alexandrium tamarense CCMP 1771 (MMETSP0380) National Center for Genome Resources 3300016720 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Estuary marine 50.6 4.25 15753941 37794 51 7 75 7 0.0 Metatranscriptome 3300030779 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB1 EcM (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030779 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7184 6.3471 388976967 1035947 3246 2077 6694 5621 SRX3349207 Unrestricted 0.0 Metatranscriptome 3300008365 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities from thermized milk in Italy - ThermizedMilk.RNAseq.exp1 University of Naples 3300008365 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Thermized milk 34184 133 13 0 90 0 0.0 Metatranscriptome 3300041444 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaT AgResearch, New Zealand, Mosgeil 3300041444 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Rhizoplane Roots Dairy farm pasture -43.648506 172.343549 28493849 57990 448 364 1757 933 0.0 Metatranscriptome 3300011018 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 5 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011018 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 7596421 18795 37 66 3489 442 Unrestricted 0.0 Metatranscriptome 3300036423 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10ST15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036423 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 87070950 177214 598 2475 4821 9154 SRX8378997 Unrestricted 45.22 Metatranscriptome 3300055314 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - m4.2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055314 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 53672014 108819 0 0 8 0 Unrestricted 247.37 Metatranscriptome 3300011050 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 56 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011050 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 36138393 86956 102 295 6724 1298 Unrestricted 0.0 Metatranscriptome 3300038150 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_M1_C1_D3_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038150 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 20278934 39683 379 213 6304 625 SRX9390200 Unrestricted 258.56 Metatranscriptome 3300037035 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp02_R52 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037035 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 299316471 596209 276 53 596 630 SRX8838364 Unrestricted 51.04 Metatranscriptome 3300047344 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_3_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047344 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 62881378 99059 1 0 27 4 Restricted 180.37 Metatranscriptome 3300019187 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Soil microbial communities from Bohemian Forest, Czech Republic - CSU2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019187 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 49.044 13.617 20708139 44873 10 258 446 1583 SRX3937177 Unrestricted 0.0 Metatranscriptome 3300008390 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34705 J. Craig Venter Institute (JCVI) 3300008390 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 27061 57 0 0 0 0 0.0 Metatranscriptome 3300018654 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_072 - TARA_N000000841 (ERX1782169-ERR1712180) Canada's Michael Smith Genome Sciences Centre 3300018654 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.6996 -17.9926 111930283 218335 2 14 17 133 0.0 Metatranscriptome 3300022228 *Microbiome Permanent Draft Characterization of microbial community from Mariana Back Arc Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Hafa_FS927_RNA_SIP_9hr_80 150_kmer Marine Biological Laboratory 3300022228 Metatranscriptome Analysis IDBA-UD 1.1.3 Trembath-Reichert et al. ?Active subseafloor microbial communities from Mariana back-arc venting fluids share metabolic strategies across different thermal niches and taxa?, ISMEJ 2019 No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Hydrothermal vent fluids 16.96175748 144.8691905 3281340 4991 204 2 648 12 0.0 Metatranscriptome 3300037013 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Metatranscriptome of forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_22 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037013 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 874494949 2030624 38 233 1487 1175 SRX8240725 Unrestricted 51.18 Metatranscriptome 3300046132 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046132 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4257 -64.7745 86396077 201521 798 37 1366 541 Unrestricted 24.9 Metatranscriptome 3300017307 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in GSe medium wiht seawater and antibiotics, at 22 C, 18 psu salinity and 261 ?mol photons light - Durinskia baltica CSIRO CS-38 (MMETSP0117_2) National Center for Genome Resources 3300017307 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 53636255 96935 65 21 90 29 0.0 Metatranscriptome 3300017231 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in Sterile coastal seawater, 18 C, 34 psu salinity and 663 ?mol photons light - Oxyrrhis marina LB1974 (MMETSP1425) National Center for Genome Resources 3300017231 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 29213010 38218 16 3 17 5 0.0 Metatranscriptome 3300019146 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS860_ls5 J. Craig Venter Institute (JCVI) 3300019146 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 290153880 1126302 149 55 626 696 0.0 Metatranscriptome 3300034645 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 RNA GHGlow gp2 (Metagenome Metatranscriptome) (NovaSeq) (version 2) DOE Joint Genome Institute (JGI) 3300034645 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -40.3794 175.6106 330661880 699021 8 43 381 217 SRX4496817, SRX7509221 Unrestricted 0.0 Metatranscriptome 3300016921 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of freshwater eukaryotic communities from Lake Giles, Pennsylvania in DY-V medium with yeast extract, 18 C, 0 psu salinity and 393 ?mol photons light - Paraphysomonas vestita GFlagA (MMETSP1107) National Center for Genome Resources 3300016921 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 17983427 21311 13 2 23 4 0.0 Metatranscriptome 3300035345 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0817S20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035345 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0388 26693400 52303 212 162 5938 422 SRX8237183 Unrestricted 66.65 Metatranscriptome 3300031849 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen2, Rep 2, Chloramphenicol (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031849 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 22329640 24915 0 3 0 2 SRX5359899, SRX5359900 Unrestricted 0.0 Metatranscriptome 3300018976 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_092 - TARA_N000001301 (ERX1789542-ERR1719444) Canada's Michael Smith Genome Sciences Centre 3300018976 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -33.6737 -71.9641 329426378 823772 17 26 44 314 0.0 Metatranscriptome 3300057186 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Vasterbotten County, Sweden - Sphagnum balticum 4OTC_BA_DE (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300057186 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.183 19.5578 178772666 394126 259 119 671 533 Unrestricted 38.41 Metatranscriptome 3300048525 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_5_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048525 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 75674031 119170 1 0 18 0 Restricted 57.5 Metatranscriptome 3300049150 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Metatranscriptome of beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - B3_RE1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049150 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Stomach Digestive system Rumen fluid Beaver rectum 49.255245 -122.508517 82102289 158977 5 2 94 28 Restricted 42.78 Metatranscriptome 3300049118 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 82a (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049118 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.9364 -81.6542 527629 1086 2 1 10 15 Restricted 559.48 Metatranscriptome 3300008798 *Microbiome Permanent Draft Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample KO-3 University of Duisburg-Essen 3300008798 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Pond Freshwater Unclassified Eutrophic pond 51.46 7.0 96139700 330136 50 75 801 373 SRX505418 0.0 Metatranscriptome 3300005492 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1300(2)_B MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005492 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 43851050 112846 1183 12 2726 28 SRX2739938, SRX2739939 Unrestricted 0.0 Metatranscriptome 3300023550 *Microbiome Permanent Draft Subsurface microbial communities from deep shales in Ohio and West Virginia, USA Metatranscriptome of mouse feces microbial communities from Columbus University, Ohio, United States - Sal2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023550 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Host-associated Mammals Large intestine Digestive system Fecal feces 40.0 -83.025 9528152 17909 2 5 395 40 SRX4387539 Unrestricted 590.51 Metatranscriptome 3300032459 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day12_7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032459 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 34069807 57103 13 0 94 2 SRX6857982 Unrestricted 209.97 Metatranscriptome 3300017139 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater and 4nM iron, 19 C, 35 psu salinity and 594 ?mol photons light - Thalassiosira weissflogii CCMP 1010 (MMETSP1411) National Center for Genome Resources 3300017139 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.0 -65.0 31583040 33702 2 1 1 1 0.0 Metatranscriptome 3300052404 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 0_100_16 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052404 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 23831343 57445 436 506 2690 2959 Unrestricted 121.45 Metatranscriptome 3300003257 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment ColumnT-2K4-0 454 Life Sciences 3300003257 Metatranscriptome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.342219 40.479289 6-8 0 0 0 0 0 0 0.0 Metatranscriptome 3300036169 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of phycosphere-associated microbial communities from LLNL, Livermore, CA, United States - Pt_3-2_filter_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036169 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Phycosphere Diatoms Unclassified defined media 37.6818 -121.768 24649789 30810 11 2 7 64 SRX8240224 Unrestricted 133.68 Metatranscriptome 3300031192 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_D6_32mM_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031192 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 22519600 33341 0 0 0 5 SRX6408184 Unrestricted 46.27 Metatranscriptome 3300031505 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_139 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031505 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92028116 -106.94891893 89069284 198021 899 542 2763 2690 SRX8133038 Unrestricted 21.57 Metatranscriptome 3300021232 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from nest from French Guiana - FG16_14_4 mRNA SA University of Luxembourg 3300021232 Metatranscriptome Analysis CLC Genomics Workbench Version 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 5.52083333 -53.13555556 43629852 147514 0 0 3 1 0.0 Metatranscriptome 3300037683 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Metatranscriptome of lab enriched marine microbial communities from Marineland, Florida, USA - SWPA_R1_TP1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037683 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6475 -82.3464 227881941 470013 331 91 697 377 SRX9144427 Unrestricted 66.95 Metatranscriptome 3300002340 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI - H_11min_Aerobic no depletion (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002340 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes tmcmahon@cae.wisc.edu, tmcmahon@engr.wisc.edu; tmcmahon@cae.wisc.edu Sludge Phage users, Katherine McMahon; Trina McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.078418 -89.386482 1916174 6091 30 39 263 159 SRX2554561 Unrestricted 0.0 Metatranscriptome 3300035054 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 RNA GHGhigh gp2 (Metagenome Metatranscriptome) (NovaSeq) (version 2) DOE Joint Genome Institute (JGI) 3300035054 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -40.3794 175.6106 934430118 1934323 16 72 524 397 SRX4497781, SRX7509817 Unrestricted 0.0 Metatranscriptome 3300027120 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0491-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300027120 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 223847613 390636 4 56 9 37 SRX5251943 Unrestricted 100.57 Metatranscriptome 3300036152 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Omics_29_30_31_32_031718 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036152 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 118543074 265734 190 83 472 1076 SRX8835140 Unrestricted 67.76 Metatranscriptome 3300039286 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Ab9 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300039286 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 609602258 1554917 116 95 859 598 SRX9404276 Unrestricted 6.91 Metatranscriptome 3300008674 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-45 University of Hawaii 3300008674 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 1221943 2243 8 1 211 75 0.0 Metatranscriptome 3300006392 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006392 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 190147242 633600 1965 4996 6024 15467 SRX3196425 Unrestricted 0.0 Metatranscriptome 3300010256 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1500(2)_B MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010256 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 123082703 274590 3084 8 19958 48 SRX2521788, SRX2521789 Unrestricted 0.0 Metatranscriptome 3300059661 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_1 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059661 Metatranscriptome Analysis megahit v. 2021-11-04 01:31:56 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 53799306 125857 115 25 222 130 Unrestricted 0.0 Metatranscriptome 3300003553 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_18_M0_10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003553 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 20154891 52007 299 41 725 890 SRX2518434 Unrestricted 0.0 Metatranscriptome 3300039247 *Microbiome Permanent Draft Rumen fluid microbial communities from dairy cows in UC Davis, California, USA Metatranscriptome of rumen fluid microbial communities from dairy cow in UC Davis, California, USA - UCD_Rumen_Seaweed_2631 (Metagenome Metatranscriptome) (FastSelect) (version 2) DOE Joint Genome Institute (JGI) 3300039247 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bmroque@ucdavis.edu Breanna Roque No Host-associated Mammals Stomach Digestive system Rumen fluid rumen fluid 38.5368 -121.7595 232656343 457385 2 30 263 267 Unrestricted 0.0 Metatranscriptome 3300037669 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Metatranscriptome of lab enriched seawater microbial communities from Marineland, Florida, United States - Algae (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037669 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Unclassified Marine Unclassified seawater 29.6475 -82.3464 26413371 40137 3 0 57 0 SRX8735045 Unrestricted 91.0 Metatranscriptome 3300051588 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 24_50_9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051588 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 33288343 87781 82 169 792 1063 Unrestricted 149.76 Metatranscriptome 3300002662 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF105 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002662 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.180244 6940556 17924 217 650 564 2784 SRX2014402 Unrestricted 0.0 Metatranscriptome 3300008956 *Microbiome Permanent Draft Microbial communities from seawater in eastern North Pacific Ocean Marine microbial communities from eastern North Pacific Ocean - P8 free-living McLane University of Georgia 3300008956 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ocean water 117131529 330551 61 10 573 337 0.0 Metatranscriptome 3300006645 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_T0_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006645 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 97825649 332035 19180 12434 52395 29580 SRX5780956 Unrestricted 0.0 Metatranscriptome 3300037652 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_N3_C1_D3_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037652 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 49529736 103132 461 509 4559 1286 SRX9385200 Unrestricted 252.21 Metatranscriptome 3300002659 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF123 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002659 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 6780418 17749 85 616 628 2968 SRX2014408 Unrestricted 0.0 Metatranscriptome 3300041671 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_15 MetaT AgResearch, New Zealand, Mosgeil 3300041671 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 46164632 102893 156 46 1370 106 0.0 Metatranscriptome 3300003530 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS891_Anemone_RNA 3300003530 Metatranscriptome Analysis CLC genomics workbench 7.0 released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933231 -130.013645 3434303 12377 107 17 556 59 0.0 Metatranscriptome 3300017207 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from La Jolla, California in ESM medium, 20 C, 35 psu salinity and 95 ?mol photons light - Lotharella globosa LEX01 (MMETSP0041_2) National Center for Genome Resources 3300017207 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 32.86692 -117.25169 29659135 36523 12 5 14 6 0.0 Metatranscriptome 3300061896 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 1_controlsoil_2_T0 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061896 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 87834923 233688 113 150 892 1066 Unrestricted 143.18 Metatranscriptome 3300002684 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_200m_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002684 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 30955407 65687 35 22 488 275 Unrestricted 0.0 Metatranscriptome 3300010021 *Microbiome Permanent Draft Black Band Disease transitions Microbial communities of stony corals with Black-band disease (BBD) from Carrie Bow Cay Field Station, Belize; BBD Transitions coral #3 sample T3 University of Maryland 3300010021 Metatranscriptome Analysis IDBA-Tran v1.1.1 released per JGI data release policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified marine 16.80288 -88.08213 258998288 479321 6 11 27 33 0.0 Metatranscriptome 3300059492 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 14R_AD_T1_R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059492 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 595516360 1486234 686 342 2735 2213 Unrestricted 52.06 Metatranscriptome 3300030639 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 20_T1F_StrEL1 developmental time series (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030639 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 72885736 96087 18 22 375 432 SRX4646385 Unrestricted 0.0 Metatranscriptome 3300009754 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from Louisiana Shelf, Gulf of Mexico - GoM_2015_C6C_198_18m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009754 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 28.8679 -90.4764 95399140 190981 208 268 6489 4871 Unrestricted 0.0 Metatranscriptome 3300017331 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 18 C, 32 psu salinity and 230 ?mol photons light - Prorocentrum minimum CCMP 1329 (MMETSP0057) National Center for Genome Resources 3300017331 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 72043253 105563 0 2 0 9 0.0 Metatranscriptome 3300046420 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_59_Fire (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046420 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1359 -81.3652 25672510 60740 124 120 949 638 Unrestricted 54.88 Metatranscriptome 3300023666 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023666 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 49.0448 13.618 26070642 39544 36 33 497 270 SRX4455003 Unrestricted 23.73 Metatranscriptome 3300018997 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_092 - TARA_N000001303 (ERX1789387-ERR1719468) Canada's Michael Smith Genome Sciences Centre 3300018997 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -33.6771 -71.9719 535367018 1338958 17 29 36 288 0.0 Metatranscriptome 3300018536 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_139 - TARA_N000003037 (ERX1789626-ERR1719185) Canada's Michael Smith Genome Sciences Centre 3300018536 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 6.4998 -94.9527 10612102 27707 0 1 7 14 0.0 Metatranscriptome 3300010183 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0700_T MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010183 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 77124236 183605 80 0 516 8 SRX2521519, SRX2521520 Unrestricted 0.0 Metatranscriptome 3300013508 *Microbiome Permanent Draft Roseovarius nubinhibens ISM and Alexandrium tamarense modeled microbial communities from the University of Georgia, USA Metatranscriptome of Roseovarius nubinhibens ISM and Alexandrium tamarense co-culture from University of Georgia, USA - T8_replete_B metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013508 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes mmoran@uga.edu Mary Ann Moran No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Laboratory simulated co-culture 33.933 -83.366 6174164 10953 0 0 472 12 SRX3020912 Unrestricted 0.0 Metatranscriptome 3300022720 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022720 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 274376493 679802 251 584 6699 4435 SRX4408095 Unrestricted 0.0 Metatranscriptome 3300003564 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from the University of North Carolina, USA - metaT NBMF1_05_lowP_nobac_d1 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003564 Metatranscriptome Analysis rnnotator v. 3.3.1 Reverted to private per Tijana Glavina del Rio (Oct 2014) No Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9082 -79.0499 55819060 78670 0 0 0 0 SRX2556969, SRX2556968 Unrestricted 0.0 Metatranscriptome 3300017503 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Atlantic Ocean in f/2 medium with seawater, no silicate, 15 C, 29.4 psu salinity and 472 ?mol photons light - Neoceratium fusus PA161109 (MMETSP1074) National Center for Genome Resources 3300017503 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Estuary marine 41.57083 -71.40517 89179327 127877 20 6 33 12 0.0 Metatranscriptome 3300010169 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1800_B MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010169 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 22059551 55653 2366 5 10827 23 SRX2521669, SRX2521668 Unrestricted 0.0 Metatranscriptome 3300029674 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_6_6_50m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029674 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 54447410 112380 219 31 2893 194 SRX5338449 Unrestricted 32.43 Metatranscriptome 3300008043 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Puerto Morelos, Mexico - Orbicella T R A metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300008043 Metatranscriptome Analysis megahit v. 0.2.0 No Yes momedinamunoz@gmail.com Monica _ Medina, Medina Medina No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral host 20.9047 -86.8367 330062782 553890 203 545 675 1352 SRX3362332 Unrestricted 0.0 Metatranscriptome 3300010874 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 3A (Eukaryote Community Metatranscriptome) (version 3) (version 3) DOE Joint Genome Institute (JGI) 3300010874 Metatranscriptome Analysis rnaSPAdes v. 0.1.1 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 633959045 1434501 3883 566 9891 1311 SRX2752796 Unrestricted 0.0 Metatranscriptome 3300008290 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34722 J. Craig Venter Institute (JCVI) 3300008290 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 43344 115 0 0 0 0 0.0 Metatranscriptome 3300004606 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 54 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004606 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 125323491 356506 8974 3121 33142 7092 Unrestricted 0.0 Metatranscriptome 3300009867 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 4, 12m depth; RNA IDBA-UD Marine Biological Laboratory 3300009867 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 6.94 32220970 81137 2638 126 12111 283 0.0 Metatranscriptome 3300012739 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES028 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012739 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 32450992 69136 189 66 3313 1492 SRX3527146 Unrestricted 0.0 Metatranscriptome 3300010152 *Microbiome Permanent Draft Soil microbial communities from various locations in USA and Cambodia to study soil gas exchange rates Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010152 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Agricultural land Soil Unclassified Soil 36.605 -97.485 587647789 1415929 108 1424 3731 12417 SRX2525517 Unrestricted 0.0 Metatranscriptome 3300032590 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_31MAY2016_LR3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032590 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Unclassified Phyllosphere Unclassified phyllosphere 42.39 -85.37 101008523 175482 47 69 75 353 SRX7077614 Unrestricted 107.93 Metatranscriptome 3300052786 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_92B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052786 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Bulk soil Soil 38.992973 -123.067448 24654837 64887 88 138 563 761 Unrestricted 171.98 Metatranscriptome 3300011015 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 13 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011015 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 6135960 14922 13 44 1574 287 Unrestricted 0.0 Metatranscriptome 3300003717 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Avena fatua rhizosphere microbial communities - H2_Rhizo_Litter_9 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003717 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mkfstone@berkeley.edu, nuccio1@llnl.gov; mkfstone@berkeley.edu Mary Firestone, Erin Nuccio; Mary Firestone No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.97364 -123.117453 13345477 35548 730 1052 5005 4266 SRX2558074 Unrestricted 0.0 Metatranscriptome 3300030921 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E5_R_5 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030921 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 374584567 1296754 93 143 221 299 SRX3341242 Unrestricted 0.0 Metatranscriptome 3300008441 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy - t10.CO.B.RNAseq.exp2 University of Naples 3300008441 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Cheese 2881285 4513 11 0 82 10 0.0 Metatranscriptome 3300037038 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp03_R75 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037038 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 338450062 656680 226 75 514 802 SRX8841027 Unrestricted 47.4 Metatranscriptome 3300059656 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 153R_AW_T3_R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059656 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 41757367 103676 159 154 541 877 Unrestricted 39.69 Metatranscriptome 3300030547 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Db9 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030547 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 381502317 864143 99 112 1686 698 SRX4547309 Unrestricted 0.0 Metatranscriptome 3300004968 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI054_150m_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004968 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 107841434 275901 2508 657 6006 1520 Unrestricted 0.0 Metatranscriptome 3300049133 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C24_B_7_control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049133 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 28999115 67940 140 92 561 518 Unrestricted 127.38 Metatranscriptome 3300023533 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLE5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023533 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 49.0448 13.618 6089782 11525 97 214 1996 1364 SRX4455180, SRX5243274 Unrestricted 0.0 Metatranscriptome 3300032616 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red2_26May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032616 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 1078158200 1831608 28 11 45 235 SRX6410019 Unrestricted 17.72 Metatranscriptome 3300049540 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049540 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 87205311 208397 188 108 849 838 Unrestricted 34.72 Metatranscriptome 3300008368 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34689 J. Craig Venter Institute (JCVI) 3300008368 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 14924 21 0 0 1 0 0.0 Metatranscriptome 3300035619 *Microbiome Permanent Draft Sediment microbial communities from Lake Washington near Medina, WA, United States Metatranscriptome of methane-enriched sediment microbial communities from Lake Washington, WA, United States - HO-FA-2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035619 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment sediment 47.6215 -122.2558 55518518 76780 7 85 11 84 SRX8379918 Unrestricted 194.09 Metatranscriptome 3300018663 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_109 - TARA_N000001784 (ERX1782465-ERR1712058) Canada's Michael Smith Genome Sciences Centre 3300018663 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com Benjamin Tully No Environmental Aquatic Unclassified Marine Unclassified Marine 2.0649 -84.5546 92055579 224462 19 57 92 358 0.0 Metatranscriptome 3300039422 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metataranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0819U20re (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300039422 Metatranscriptome Analysis MEGAHIT v. 1.2.9 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.039 161538871 346390 392 622 14264 1523 SRX8670201 Unrestricted 41.65 Metatranscriptome 3300020086 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate b, metaT Georgia Genomics Facility 3300020086 Metatranscriptome Analysis Trinity 2.06 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 34375628 107606 6902 1718 15999 4779 0.0 Metatranscriptome 3300005419 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom. Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005419 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sgtringe@lbl.gov, rmmckay@bgsu.edu Susannah Tringe, Robert M. McKay No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.69957 -83.2941 283263267 724615 856 6379 2298 15248 SRX3195525 Unrestricted 0.0 Metatranscriptome 3300018689 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Eukaryotic communities of water from different depths collected during the Tara Oceans expedition - TARA_N000000852 (ERX1086441-ERR1007416) Genoscope 3300018689 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ocean water 57398084 280542 78 51 223 1145 ERX1782166, ERX1782372, ERX1086441 0.0 Metatranscriptome 3300049115 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 74 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049115 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.9364 -81.6542 843464 1492 2 6 12 18 Restricted 413.23 Metatranscriptome 3300008795 *Microbiome Permanent Draft Microbial communities from freshwater in the western basin of Lake Erie, USA Microbial communities from freshwater in the western basin of Lake Erie, USA - 882-2 University of Tennessee 3300008795 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.76 -83.31 7204579 19361 63 90 445 1101 0.0 Metatranscriptome 3300016779 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in K/2 Ian medium, 22 C, 35 psu salinity and 758 ?mol photons light - Pycnococcus provasolii RCC 2336 (MMETSP1316) National Center for Genome Resources 3300016779 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 35.21666667 139.6166667 13049206 16418 22 3 43 2 0.0 Metatranscriptome 3300046180 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_3_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046180 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 52610866 92066 3 40 159 166 Restricted 210.1 Metatranscriptome 3300041982 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Metatranscriptome of feshwater microbial communities from Georgia, USA - altamaha_2019_sw_WHONDRS-S19S_0010 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300041982 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 31.6679 -81.8403 82133170 185677 231 404 1397 2024 Unrestricted 42.1 Metatranscriptome 3300030720 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB4_952_Surface (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030720 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 75.0007 -150.0027 119398255 234135 116 25 167 527 SRX5652365 Unrestricted 14.36 Metatranscriptome 3300004542 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 73_LOW10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004542 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 35162781 80475 222 20 988 40 SRX2725130 Unrestricted 0.0 Metatranscriptome 3300008806 *Microbiome Permanent Draft Microbial communities from harbor seals stranded along the coast of California, USA Microbial communities from harbor seals stranded along the coast of California, USA - UCD3 Oregon State University 3300008806 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Brain Nervous system Unclassified Harbor seal brain 37.8592 -122.4853 285343982 558044 0 2 52 7 ERX1190716 0.0 Metatranscriptome 3300019242 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Metatranscriptome of peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin02_10_metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019242 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 247882848 560135 431 857 6850 4636 SRX3886999 Unrestricted 0.0 Metatranscriptome 3300010423 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS906_80_TP1_13L Marine Biological Laboratory 3300010423 Metatranscriptome Analysis CLC genomics wb7 released per JGI data release policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 1411584 4122 96 1 86 1 0.0 Metatranscriptome 3300052747 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_194 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052747 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 181836225 478446 294 197 1433 1222 Unrestricted 77.09 Metatranscriptome 3300021332 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States - S.384 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021332 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.178 -123.853 352232474 880791 132 664 2013 2110 SRX4016233 Unrestricted 0.0 Metatranscriptome 3300008760 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_3002 Massachusetts Institute of Technology 3300008760 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 5287107 18004 13 8 367 763 0.0 Metatranscriptome 3300046236 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_5_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046236 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 69720680 115795 1 0 27 0 Restricted 115.05 Metatranscriptome 3300030586 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE041SO (Eukaryote Community Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300030586 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2937 -71.1771 328109325 728299 61 68 1762 440 SRX4391322, SRX4391323 Unrestricted 0.0 Metatranscriptome 3300034648 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_1000_MSt9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034648 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 159359993 394112 1 0 60 1 SRX8254418 Unrestricted 308.21 Metatranscriptome 3300011033 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 33 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011033 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 21138109 51229 70 167 5112 890 Unrestricted 0.0 Metatranscriptome 3300035348 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0819M58 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035348 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0387 59410071 119941 238 56 7360 186 SRX8237432 Unrestricted 47.46 Metatranscriptome 3300018657 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_068 - TARA_N000000705 (ERX1789382-ERR1719418) Canada's Michael Smith Genome Sciences Centre 3300018657 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -31.0551 4.668 110844882 222704 4 10 2 79 0.0 Metatranscriptome 3300019184 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Soil microbial communities from Bohemian Forest, Czech Republic - CSA2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019184 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 49.044 13.617 16788092 36759 13 92 716 864 SRX3937183 Unrestricted 0.0 Metatranscriptome 3300047347 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_3_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047347 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 57127408 90902 1 0 26 0 Restricted 255.78 Metatranscriptome 3300030988 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030988 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92057636 -106.94874802 358478832 832454 638 395 2671 2286 SRX8133421 Unrestricted 18.82 Metatranscriptome 3300049106 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 61+65 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049106 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.8286 -82.5011 27148645 49454 50 40 105 284 Restricted 67.72 Metatranscriptome 3300027040 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0512-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300027040 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 155872697 262182 6 3 8 66 SRX5252255 Unrestricted 117.76 Metatranscriptome 3300010896 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_4_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010896 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 74277124 173437 23 456 4807 3880 Unrestricted 0.0 Metatranscriptome 3300044482 *Microbiome Permanent Draft Sediment microbial communities from various environments and locations in Europe Metatranscriptome of sediment microbial communities from Baltic Sea, Sweden - H2D5S (Metagenome Metatranscriptome) (nonstranded IMG v5.0) DOE Joint Genome Institute (JGI) 3300044482 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes o.eyice@qmul.ac.uk Ozge Eyice No Environmental Aquatic Sediment Marine Unclassified Sediment 58.9344 17.7391 507714064 1134309 12 9 527 83 Unrestricted 11.22 Metatranscriptome 3300032750 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Shad10_26May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032750 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 842914331 1425963 8 3 13 116 SRX6411415 Unrestricted 0.0 Metatranscriptome 3300008815 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of boa constrictors from Steinhart Aquarium in San Francisco, USA - CAS07_Liver University of California, San Francisco 3300008815 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Biliary tract Digestive system Liver Liver 4771379 14478 0 0 0 0 SRX170622 0.0 Metatranscriptome 3300037641 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_M1_C3_D2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037641 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 65090344 122306 270 1701 2222 4745 SRX9383808 Unrestricted 185.66 Metatranscriptome 3300031742 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from Antarctic Ocean - PS103-5.R3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031742 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified marine -59.0467 0.0779 787189260 1425432 26 2 42 119 SRX5356514 Unrestricted 15.82 Metatranscriptome 3300018575 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_135 - TARA_N000002191 (ERX1782379-ERR1712162) Canada's Michael Smith Genome Sciences Centre 3300018575 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 32.931 -121.8645 35933349 84777 9 1 29 49 0.0 Metatranscriptome 3300006599 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Total_1213_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006599 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 193750858 521412 327 465 1268 1026 SRX2752457 Unrestricted 0.0 Metatranscriptome 3300059649 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 68R_SW_T2_R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059649 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 137562325 347810 291 255 1142 1409 Unrestricted 69.62 Metatranscriptome 3300057144 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of lake water microbial communities from Sandhills, Nebraska, United States - NSL_Island_2018 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300057144 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.73473 -102.41005 93145126 208825 83 26 300 150 Unrestricted 89.43 Metatranscriptome 3300005250 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1800_T MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005250 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 83467284 208183 64 6 334 16 SRX2521306, SRX2521305 Unrestricted 0.0 Metatranscriptome 3300046203 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_1_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046203 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 33537210 62111 1 0 12 0 Restricted 205.95 Metatranscriptome 3300004566 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 19_HOW5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004566 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 17076163 45304 396 524 1153 1704 SRX2779776 Unrestricted 0.0 Metatranscriptome 3300048680 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Metatranscriptome of soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048680 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.3476 -119.2808 51508556 86152 27 3 44 25 Unrestricted 57.22 Metatranscriptome 3300027936 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0513-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300027936 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 104360883 190337 59 11 51 61 SRX5256130 Unrestricted 65.89 Metatranscriptome 3300047422 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81957636-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047422 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 215770344 529993 434 253 1843 1547 Unrestricted 42.3 Metatranscriptome 3300016985 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Mediterranean Sea in K medium, 20 C, 36 psu salinity and 677 ?mol photons light - Leptocylindrus danicus B650 (MMETSP0321) National Center for Genome Resources 3300016985 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 40.8083 14.25 29485124 33966 43 25 76 51 0.0 Metatranscriptome 3300030872 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLI5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030872 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 59.9989 10.7903 76834685 203198 102 152 400 678 SRX5351303 Unrestricted 0.0 Metatranscriptome 3300019266 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101407AT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019266 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 382980939 857970 316 354 7094 4803 SRX3920933 Unrestricted 0.0 Metatranscriptome 3300028271 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Colum_RepC_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028271 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 148101918 311588 99 69 348 502 SRX5245637 Unrestricted 26.26 Metatranscriptome 3300043809 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_17 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043809 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 102762998 239034 94 307 4045 1490 Unrestricted 57.89 Metatranscriptome 3300008833 *Microbiome Permanent Draft Eukaryotic communities of water from Amazon river, Brazil and North Atlantic ocean Eukaryotic communities of water from the North Atlantic ocean - ACM7 University of Georgia 3300008833 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 8349660 27235 0 0 1 0 0.0 Metatranscriptome 3300024531 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepA_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024531 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 200629585 427203 57 130 687 1156 SRX4797005 Unrestricted 21.64 Metatranscriptome 3300017304 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Baltic Sea in L1 medium with NH4Cl, 4 C, 32 psu salinity and 513 ?mol photons light - Dictyocha speculum CCMP 1381 (MMETSP1174) National Center for Genome Resources 3300017304 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 55.48 11.1 37863264 55540 13 1 16 2 0.0 Metatranscriptome 3300006415 *Microbiome Permanent Draft Algae and Fungi communities from freshwater lake in Auvergne, France during and after algae bloom "Algae and Fungi communities from freshwater lake (pre-blooming) in Auvergne, France - collected by filtering lake water, a ""reference genome"" of the lake community" Institut Pasteur, Lille, France 3300006415 Metatranscriptome Analysis Trinity 2.06 released per JGI data release policy No Yes luenlee@yahoo.com L Monchy, Luen Luen LI No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 45.49 2.88 799484401 1676563 1193 813 2821 2126 0.0 Metatranscriptome 3300005501 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1700(2)_T MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005501 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 61916195 164717 50 1 281 2 SRX5628621 Unrestricted 0.0 Metatranscriptome 3300008677 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-43 University of Hawaii 3300008677 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 688431 1198 9 0 194 64 0.0 Metatranscriptome 3300010088 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_24_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010088 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 50321946 116191 136 631 12731 5286 Unrestricted 0.0 Metatranscriptome 3300018503 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_128 - TARA_N000002303 (ERX1782097-ERR1712101) Canada's Michael Smith Genome Sciences Centre 3300018503 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 0.0348 -153.7857 13188586 26373 1 9 2 29 0.0 Metatranscriptome 3300008900 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of annulated tree boas from Steinhart Aquarium in San Francisco, USA - CAS05_Heart University of California, San Francisco 3300008900 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Heart Circulatory system Unclassified Heart 3626163 10459 0 0 0 0 SRX170645 0.0 Metatranscriptome 3300041693 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_45 MetaT AgResearch, New Zealand, Mosgeil 3300041693 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 15161373 34591 290 57 1967 129 0.0 Metatranscriptome 3300028179 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0741-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028179 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 215335858 360166 12 7 9 59 SRX5254094 Unrestricted 77.69 Metatranscriptome 3300052407 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 3_50_10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052407 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 95579820 251086 235 223 1403 1542 Unrestricted 61.35 Metatranscriptome 3300008555 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - PM74.FECAL.14dpc CCME-COLORADO 3300008555 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 4307546 18193 45 2 1296 16 0.0 Metatranscriptome 3300004615 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 11 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004615 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 128236042 420038 9396 2427 29646 5398 Unrestricted 0.0 Metatranscriptome 3300026430 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0931-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026430 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 154392856 261059 9 10 7 58 SRX4796399 Unrestricted 63.04 Metatranscriptome 3300010200 *Microbiome Permanent Draft Host-associated microbial communities from peat moss Sphagnum species from Minnesota, USA Peat moss associated microbial communities from Sphagnum species from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010200 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes joel.kostka@biology.gatech.edu Joel Kostka No Host-associated Plants Unclassified Peat moss Unclassified Peat moss associated 47.5028 -93.4828 199734645 389962 303 762 1949 6044 SRX3007417 Unrestricted 0.0 Metatranscriptome 3300046682 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_1_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046682 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 47470896 70905 1 0 12 0 Restricted 83.88 Metatranscriptome 3300008701 *Microbiome Permanent Draft Microbial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean Microbial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean - J2-614-04 University of Michigan 3300008701 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vents 1985584 8891 384 10 2851 120 0.0 Metatranscriptome 3300018938 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_039 - TARA_B100000091 (ERX1399742-ERR1328124) Canada's Michael Smith Genome Sciences Centre 3300018938 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 18.5839 66.4727 205531014 879829 20 36 76 370 0.0 Metatranscriptome 3300052372 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_149B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052372 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Bulk soil Soil 38.992973 -123.067448 39040119 104765 70 107 691 627 Unrestricted 89.97 Metatranscriptome 3300018829 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_080 - TARA_N000001477 (ERX1789429-ERR1719435) Canada's Michael Smith Genome Sciences Centre 3300018829 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -40.6083 -51.9557 218914105 458123 0 15 0 59 0.0 Metatranscriptome 3300019026 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_150 - TARA_N000002719 Canada's Michael Smith Genome Sciences Centre 3300019026 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 35.7867 -37.0916 571830546 1202901 0 38 1 115 0.0 Metatranscriptome 3300017019 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium, 6 C, 21 psu salinity and 416 ?mol photons light - Detonula confervacea CCMP 353 (MMETSP1058) National Center for Genome Resources 3300017019 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 41.6 -71.4 35531693 36431 8 4 8 3 0.0 Metatranscriptome 3300046275 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_4_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046275 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 67346031 110356 1 0 20 2 Restricted 179.82 Metatranscriptome 3300022154 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 1-17 MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022154 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9406 -83.5607 65229250 137745 525 1808 18165 11299 SRX4036940 Unrestricted 0.0 Metatranscriptome 3300028757 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Phe1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028757 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 59946971 113185 6 12 180 52 SRX5356189 Unrestricted 85.04 Metatranscriptome 3300009573 *Microbiome Permanent Draft Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea North East Pacific Ocean microbial community - Bloomer_DOMexp_DOMadd_27hr_metatranscriptome Massachusetts Institute of Technology 3300009573 Metatranscriptome Analysis Greengenes NAST aligner, Ribosomal Database Project (RDP) naive Bayesian classifier released per JGI data release policy No Yes sarabc@mit.edu Sara Collins No Environmental Aquatic Epipelagic Marine Unclassified open ocean 23.214666 -159.136166 183484194 736271 120835 1738 551734 6569 0.0 Metatranscriptome 3300026400 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 26R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026400 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 82458648 149837 119 21 189 267 SRX4783592 Unrestricted 33.72 Metatranscriptome 3300059507 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 98R_CW_T2_R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059507 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 214642454 524990 642 381 2318 2317 Unrestricted 45.12 Metatranscriptome 3300042577 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_36E_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042577 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 50848378 70863 0 0 0 1 Unrestricted 265.05 Metatranscriptome 3300030812 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030812 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 59.997 10.7902 14210161 27071 131 267 476 1435 SRX5351358 Unrestricted 0.0 Metatranscriptome 3300050578 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae axenic culture microbial communities from LLNL, Livermore, California, USA - f11_d2_W_S20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050578 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 22185809 25622 3 0 5 9 Restricted 337.36 Metatranscriptome 3300052437 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 27-S43Day7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052437 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 98895536 200061 16 0 43 6 Unrestricted 41.65 Metatranscriptome 3300018499 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_051 - TARA_N000000196 (ERX1782145-ERR1712092) Canada's Michael Smith Genome Sciences Centre 3300018499 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -21.4752 54.3236 7021606 16417 0 1 2 55 0.0 Metatranscriptome 3300035585 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - 28B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035585 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4211 16.6688 149990888 311976 142 354 2293 1637 SRX8209502 Unrestricted 46.56 Metatranscriptome 3300018533 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_147 - TARA_N000002107 (ERX1789415-ERR1719338) Canada's Michael Smith Genome Sciences Centre 3300018533 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 32.9997 -66.5655 29272356 70300 0 5 1 30 0.0 Metatranscriptome 3300023304 *Microbiome Finished Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Sorghum rhizosphere microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B3.ctno.R1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300023304 Metatranscriptome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes hwipf@berkeley.edu; colemanderr@gmail.com Edi Wipf; Devin Coleman-Derr No Host-associated Plants Rhizosphere Roots Unclassified sorghum rhizosphere 36.339058 -120.12031 16744710 32794 114 958 978 2455 0.0 Metatranscriptome 3300054701 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_TH_006R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300054701 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0523 10.4536 251535061 635719 898 615 2795 2943 Unrestricted 53.09 Metatranscriptome 3300008930 *Microbiome Permanent Draft Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica - 1B J. Craig Venter Institute (JCVI) 3300008930 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ice edge, McMurdo Sound, Antarctica -77.36 164.28 184817731 517443 30 7 94 91 0.0 Metatranscriptome 3300046649 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_1_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046649 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 27277100 42389 1 0 5 0 Restricted 202.42 Metatranscriptome 3300010186 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_2300_T MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010186 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 81265977 195563 45 1 423 8 SRX2521361, SRX2521362 Unrestricted 0.0 Metatranscriptome 3300031040 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031040 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 59.997 10.7902 88766553 228045 88 168 551 824 SRX5351408 Unrestricted 0.0 Metatranscriptome 3300005630 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling - Hofmockel_1000072-3 ISU MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005630 Metatranscriptome Analysis megahit v. 0.2.0 No Yes khof@iastate.edu, kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Agricultural land Soil Unclassified Enriched soil aggregate 42.0266187 -93.6486594 29144674 75873 134 68 730 147 SRX3195342 Unrestricted 0.0 Metatranscriptome 3300051245 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Sankt Oswald-Riedlhutte, Bavaria, Germany - BW_TH_002R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051245 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.931069 13.425342 72070927 186951 286 253 1268 1028 Unrestricted 102.11 Metatranscriptome 3300030924 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E5_V_5 metaT (Eukaryote Community Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300030924 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 343078405 664538 7 9 40 60 SRX3341593 Unrestricted 0.0 Metatranscriptome 3300008444 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy - t30.CO.A.RNAseq.exp2 University of Naples 3300008444 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Cheese 2194844 3889 1 0 35 2 0.0 Metatranscriptome 3300010147 *Microbiome Permanent Draft Soil microbial communities from various locations in USA and Cambodia to study soil gas exchange rates Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010147 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 37.1932 -122.2204 303323377 750705 294 737 30592 6470 SRX2525519 Unrestricted 0.0 Metatranscriptome 3300019128 *Microbiome Permanent Draft Microbial communities from hydrothermal vent in East Pacific Rise, Pacific Ocean Fluid microbial communities from hydrothermal vent in East Pacific Rise, Pacific Ocean - LVP2 Bigelow Laboratory for Ocean Sciences 3300019128 Metatranscriptome Analysis Spades released by JGI data releasing policy No Yes ashleygrosche@yahoo.com Ashley Grosche No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Hydrothermal Fluids 9.84 -104.29 54210 152 1 0 8 0 0.0 Metatranscriptome 3300017298 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in f/2-R medium with seawater, 210 ?M silicate, 5 C, 35 psu salinity and 121 ?mol photons light - Fragilariopsis kerguelensis L2-C3 (MMETSP0909) National Center for Genome Resources 3300017298 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -48.1 -24.25 35380287 52253 31 3 53 6 0.0 Metatranscriptome 3300018515 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_083 - TARA_N000001372 (ERX1782216-ERR1712231) Canada's Michael Smith Genome Sciences Centre 3300018515 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -54.3739 -65.1342 14326628 34795 51 14 118 217 0.0 Metatranscriptome 3300036282 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0608S02 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300036282 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8959 -97.0388 45635613 92742 237 913 4325 2681 SRX9140124, SRX9140125 Unrestricted 0.0 Metatranscriptome 3300017506 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Atlantic Ocean in f/2 medium with seawater, no silicate, 15 C, 29.4 psu salinity and 148 ?mol photons light - Neoceratium fusus PA161109 (MMETSP1075) National Center for Genome Resources 3300017506 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Estuary marine 41.57083 -71.40517 94578209 130997 33 7 59 11 0.0 Metatranscriptome 3300023689 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023689 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 49.043 13.6183 32195824 48266 26 49 514 386 SRX4454775 Unrestricted 23.18 Metatranscriptome 3300046072 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-193 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046072 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4199 -64.1151 101970297 241051 364 23 651 232 Unrestricted 25.84 Metatranscriptome 3300047465 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81957a8c-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047465 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 332942589 817700 517 282 2482 1676 Unrestricted 41.35 Metatranscriptome 3300018908 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_098 - TARA_N000001584 (ERX1789660-ERR1719479) Canada's Michael Smith Genome Sciences Centre 3300018908 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -25.8162 -111.7349 243475476 557658 0 15 9 109 0.0 Metatranscriptome 3300032121 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Soil microbial communities from Bohemian Forest, Czech Republic - CSA3 metaT (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300032121 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 49.0431 13.617 37860897 88282 193 119 2289 753 SRX4081048, SRX5229541 Unrestricted 0.0 Metatranscriptome 3300012524 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012524 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 37.1043 -76.1811 311057199 667324 106 388 811 7994 SRX3007424 Unrestricted 0.0 Metatranscriptome 3300008046 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Puerto Morelos, Mexico - Diporia T A metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300008046 Metatranscriptome Analysis megahit v. 0.2.0 No Yes momedinamunoz@gmail.com Monica _ Medina, Medina Medina No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral host 20.8778 -86.8431 227592673 341579 73 137 308 356 SRX3362341 Unrestricted 0.0 Metatranscriptome 3300027274 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0945-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300027274 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 255228597 426093 23 13 10 77 SRX5244913 Unrestricted 41.58 Metatranscriptome 3300016899 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine sediment eukaryotic communities from Great South Bay, New York in artificial seawater with 1% horse serum and 0.8% agar, 23 C, 25 psu salinity and 170 ?mol photons light - Aplanochytrium sp. PBS07 (MMETSP0955) National Center for Genome Resources 3300016899 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Sediment marine sediment 40.93 -72.5 15793043 18733 15 9 28 8 0.0 Metatranscriptome 3300004603 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004603 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 98637917 302847 7601 2755 27549 6035 Unrestricted 0.0 Metatranscriptome 3300008875 *Microbiome Permanent Draft Microbial communities of Wadden Sea tidal flat in Germany Microbial communities of Wadden Sea tidal flat in Germany - 1450 fallingTide Bielefeld University 3300008875 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Tidal flat 53.73 7.67 21057347 68108 43 24 647 207 0.0 Metatranscriptome 3300052783 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_91 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052783 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 21070066 55124 50 95 334 492 Unrestricted 141.17 Metatranscriptome 3300017360 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from English Channel in K medium with silica, 20 C, 21 psu salinity and 671 ?mol photons light - Nitzschia sp. RCC80 (MMETSP0014_2) National Center for Genome Resources 3300017360 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 48.43 3.59 56802927 76210 7 4 13 4 0.0 Metatranscriptome 3300030569 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Bnb5 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030569 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 398399458 820684 309 362 2941 1634 SRX4546988 Unrestricted 0.0 Metatranscriptome 3300017079 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium, 13 C, 21 psu salinity and 150 ?mol photons light - Cyclotella meneghiniana CCMP 338 (MMETSP1057) National Center for Genome Resources 3300017079 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 43.8442 -69.641 41006879 41278 3 1 3 1 0.0 Metatranscriptome 3300046215 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_3_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046215 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 61796124 101200 1 26 178 123 Restricted 185.68 Metatranscriptome 3300059653 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 145R_CW_T3_R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059653 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 76285168 187745 258 219 1028 1333 Unrestricted 66.66 Metatranscriptome 3300003561 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from the University of North Carolina, USA - metaT NBMF1_01_fullP_nobac_d1 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003561 Metatranscriptome Analysis rnnotator v. 3.3.1 Reverted to private per Tijana Glavina del Rio (Oct 2014) No Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9082 -79.0499 53838682 76262 1 1 0 0 SRX2555527, SRX2555528 Unrestricted 0.0 Metatranscriptome 3300030552 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Db7 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030552 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 366393977 855203 129 171 2367 737 SRX4547306 Unrestricted 0.0 Metatranscriptome 3300000305 *Microbiome Draft Blue grama grass rhizosphere eukaryotic and microbial communities from Sevilleta Long Term Ecological Research site, New Mexico, US Blue grama grass rhizosphere microbial communities from Sevilleta, New Mexico, USA - Combined Assembly DOE Joint Genome Institute (JGI) 3300000305 Metatranscriptome Analysis No Yes ajpowel@gmail.com Amy Powell Yes 26279186 Host-associated Plants Rhizosphere Roots Soil Blue grama grass rhizosphere 34.3348 -106.631 38205794 138523 3863 3158 21120 10280 0.0 Metatranscriptome 3300008529 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - PM76.FECAL.14dpc CCME-COLORADO 3300008529 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 3385079 14544 33 2 850 12 0.0 Metatranscriptome 3300032481 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Amb1_26May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032481 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 942131539 1552451 27 4 48 179 SRX6410018 Unrestricted 21.12 Metatranscriptome 3300012969 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012969 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 37.1043 -76.1811 325302612 695985 84 385 751 7978 SRX3007429 Unrestricted 0.0 Metatranscriptome 3300048712 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Metatranscriptome of marine sediment microbial communities from Garden Bank mud volcano, Gulf of Mexico - Ethane_Reactor1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048712 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Environmental Aquatic Mud volcano Marine Sediment Sediment 27.552333 -92.540617 29618898 48672 1 2 47 2 Restricted 232.52 Metatranscriptome 3300010871 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 3A (Eukaryote Community Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010871 Metatranscriptome Analysis MEGAHIT v. 1.0.4b No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 497811107 1207690 5222 665 14326 1640 SRX2752796 Unrestricted 0.0 Metatranscriptome 3300020069 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300020069 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil corn rhizosphere 42.3948 -85.3738 804502648 1788356 651 3223 15609 38034 SRX4365319, SRX4365318 Unrestricted 0.0 Metatranscriptome 3300006403 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006403 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 437612121 1155302 5836 9820 15517 26595 SRX3196462 Unrestricted 0.0 Metatranscriptome 3300018666 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_025 - TARA_A100000398 (ERX1782307-ERR1712184) Canada's Michael Smith Genome Sciences Centre 3300018666 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.3991 19.3997 98742570 224938 36 14 174 295 0.0 Metatranscriptome 3300021848 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.667 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021848 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.302 -123.036 31700259 73100 669 1535 4887 4984 SRX4018518 Unrestricted 0.0 Metatranscriptome 3300023536 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZE4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023536 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 49.0427 13.6161 8077294 17651 61 57 1334 416 SRX4455327 Unrestricted 69.58 Metatranscriptome 3300003695 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_150m_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003695 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 14132859 35274 238 50 762 253 Unrestricted 0.0 Metatranscriptome 3300059682 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_22 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059682 Metatranscriptome Analysis megahit v. 2021-11-04 04:07:39 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 204782515 461418 282 78 816 351 Unrestricted 0.0 Metatranscriptome 3300009751 *Microbiome Permanent Draft Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling - T5-LHNO3 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009751 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes milachis@u.washington.edu Ludmila Chistoserdova No Engineered Modeled Plant nodule Simulated communities (microbial mixture) Unclassified Methane-oxidizing 47.6193 -122.2449 74674024 169042 6 0 244 3 SRX2525437 Unrestricted 0.0 Metatranscriptome 3300028119 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 9R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028119 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 38427270 91372 277 54 521 916 SRX5172037 Unrestricted 35.53 Metatranscriptome 3300017334 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Narragansett Bay in marine media K with soil extract, 18 C, 35 psu salinity and 157 ?mol photons light - Eutreptiella gymnastica CCMP 1594 (MMETSP0810) National Center for Genome Resources 3300017334 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 41.6 -71.4 41649301 64432 1 1 1 1 0.0 Metatranscriptome 3300008803 *Microbiome Permanent Draft Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample NP-2 University of Duisburg-Essen 3300008803 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Pond Freshwater Unclassified Eutrophic pond 51.46 7.0 153856357 520924 53 71 932 413 SRX505508 0.0 Metatranscriptome 3300052752 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_32B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052752 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Bulk soil Soil 38.992973 -123.067448 66822247 173472 82 88 1066 630 Unrestricted 53.82 Metatranscriptome 3300041674 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_168 MetaT AgResearch, New Zealand, Mosgeil 3300041674 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 953065 2007 57 47 277 74 0.0 Metatranscriptome 3300038280 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_OW2_C1_D1_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038280 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 91023329 187616 489 1703 6820 6098 SRX9390227 Unrestricted 113.52 Metatranscriptome 3300002681 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF120 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002681 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 16371800 46261 159 676 1210 3044 SRX2014404 Unrestricted 0.0 Metatranscriptome 3300019257 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_16_1Ra (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019257 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9233 -106.9516 222817486 533051 89 630 6503 4250 SRX4809450 Unrestricted 0.0 Metatranscriptome 3300004557 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 23 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004557 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 58325329 199642 4418 2175 14243 4588 Unrestricted 0.0 Metatranscriptome 3300011108 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 77 (Metagenome Metatranscriptome) (version 2) (version 3) DOE Joint Genome Institute (JGI) 3300011108 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 18013651 44315 45 106 2710 466 Unrestricted 0.0 Metatranscriptome 3300010426 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS906_80_TP1_13H Marine Biological Laboratory 3300010426 Metatranscriptome Analysis CLC genomics wb7 released per JGI data release policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 3064922 6824 58 0 194 2 0.0 Metatranscriptome 3300011036 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 82 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011036 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 21676973 53473 166 285 18806 1083 Unrestricted 0.0 Metatranscriptome 3300052769 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_77B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052769 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Bulk soil Soil 38.992973 -123.067448 28728650 77536 66 103 498 604 Unrestricted 213.14 Metatranscriptome 3300030583 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO145-ARE023SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030583 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2713 -71.2091 388730729 858994 74 71 1260 429 SRX4011194 Unrestricted 0.0 Metatranscriptome 3300018855 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_135 - TARA_N000002191 (ERX1782341-ERR1711903) Canada's Michael Smith Genome Sciences Centre 3300018855 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 32.931 -121.8645 208880231 519777 42 4 104 140 0.0 Metatranscriptome 3300046233 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_5_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046233 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 49443336 87809 1 0 23 0 Restricted 169.6 Metatranscriptome 3300008704 *Microbiome Permanent Draft Microbial communities of corn and soybean rhizosphere soil from Ohio, USA Microbial communities of soybean rhizosphere soil from Ohio, USA - Soybean_Control_2a Auburn University 3300008704 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Plants Rhizosphere Roots Soil Rhisosphere soil 7118729 27630 487 273 18204 2022 SRX1078294 0.0 Metatranscriptome 3300041469 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover leaf microbial community from Lincoln, Canterbury, New Zealand - WCL17_3 MetaT AgResearch, New Zealand, Mosgeil 3300041469 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 6137204 10701 50 87 153 109 0.0 Metatranscriptome 3300018768 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_138 - TARA_N000003011 (ERX1789448-ERR1719377) Canada's Michael Smith Genome Sciences Centre 3300018768 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine 6.3378 -102.9538 149156928 380383 0 6 13 75 0.0 Metatranscriptome 3300010893 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS917_55_13C_TP1_INC4_8 Marine Biological Laboratory 3300010893 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 793650 1725 162 6 171 9 0.0 Metatranscriptome 3300049103 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 17 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049103 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 42.2817 -81.6717 12706584 26331 19 3 51 27 Restricted 38.8 Metatranscriptome 3300029693 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_50m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029693 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 133047633 263121 366 84 4378 562 SRX5337942 Unrestricted 40.66 Metatranscriptome 3300026461 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 75R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026461 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 190667697 393689 240 59 382 896 SRX4796132 Unrestricted 20.32 Metatranscriptome 3300004589 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 2_LOW4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004589 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 45959441 131471 5650 89 12639 225 SRX2779562 Unrestricted 0.0 Metatranscriptome 3300057249 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T1_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300057249 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 56762538 124063 23 5 153 34 Unrestricted 0.0 Metatranscriptome 3300059667 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_7 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059667 Metatranscriptome Analysis megahit v. 2021-11-04 03:08:01 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 79817298 186563 129 29 301 174 Unrestricted 0.0 Metatranscriptome 3300032428 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day14_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032428 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 35457538 58619 7 1 22 3 SRX7582882 Unrestricted 224.07 Metatranscriptome 3300022151 *Microbiome Permanent Draft Anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States Metatranscriptome of anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States - LAC_MetaT_8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022151 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes alvarez@ce.berkeley.edu Lisa Alvarez-Cohen No Engineered Bioreactor Unclassified Anaerobic Unclassified anaerobic bioreactor biomass 37.8719 -122.2585 62380051 117378 2 10 132 51 SRX4020296 Unrestricted 0.0 Metatranscriptome 3300043780 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_188 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043780 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 32143967 76004 141 207 907 992 Unrestricted 55.99 Metatranscriptome 3300018642 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS695_0p1 J. Craig Venter Institute (JCVI) 3300018642 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 49065808 209342 21 19 191 425 0.0 Metatranscriptome 3300022384 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.184 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022384 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.286 -124.052 175458629 461226 364 934 4303 2957 SRX4015863 Unrestricted 0.0 Metatranscriptome 3300046206 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_1_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046206 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 34056293 60978 1 0 10 1 Restricted 180.8 Metatranscriptome 3300010922 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS917_55_12C_TP1_9 Marine Biological Laboratory 3300010922 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 4183638 8358 556 2 728 12 0.0 Metatranscriptome 3300046598 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-33 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046598 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4199 -64.1151 85837548 202014 424 16 662 290 Unrestricted 17.24 Metatranscriptome 3300021302 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.270 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021302 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.27 -123.946 107783936 267545 280 1148 11301 6197 SRX4016022 Unrestricted 0.0 Metatranscriptome 3300019045 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_110 - TARA_N000001752 (ERX1782348-ERR1712224) Canada's Michael Smith Genome Sciences Centre 3300019045 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -1.9002 -84.6265 1233002387 2957064 501 149 1912 1666 0.0 Metatranscriptome 3300052884 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 36-S49Day63 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052884 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 181520385 371531 66 11 196 80 Unrestricted 57.87 Metatranscriptome 3300004563 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 33_HOW6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004563 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 11453037 27319 393 143 1624 425 SRX2779924 Unrestricted 0.0 Metatranscriptome 3300032522 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red3_24May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032522 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 970304978 1660312 13 3 19 137 SRX6410042 Unrestricted 20.87 Metatranscriptome 3300041510 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaT AgResearch, New Zealand, Mosgeil 3300041510 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Unclassified Roots Unclassified White clover root -43.648506 172.343549 26055337 44584 156 97 650 271 0.0 Metatranscriptome 3300008836 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_4010 Massachusetts Institute of Technology 3300008836 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 3382205 11083 7 8 265 632 0.0 Metatranscriptome 3300019263 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019263 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 252571798 596993 747 1456 38777 10564 SRX3940209 Unrestricted 0.0 Metatranscriptome 3300006379 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006379 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 156488206 443544 3495 16857 7932 40525 SRX3196459 Unrestricted 0.0 Metatranscriptome 3300009516 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 2m depth; RNA IDBA-UD Marine Biological Laboratory 3300009516 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 7.4 46276074 112083 1369 2497 5441 4852 0.0 Metatranscriptome 3300041483 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover leaf microbial community from Lincoln, Canterbury, New Zealand - WCL18_7 MetaT AgResearch, New Zealand, Mosgeil 3300041483 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 44744390 99573 549 60 3640 177 0.0 Metatranscriptome 3300004797 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004797 Metatranscriptome Analysis megahit v. 0.2.0 No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 623761454 1831431 3760 1831 12995 8840 SRX2518375 Unrestricted 0.0 Metatranscriptome 3300048945 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 22 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048945 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 42.4305 -81.2062 13193905 28442 12 4 45 28 Restricted 75.61 Metatranscriptome 3300018506 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_093 - TARA_N000001306 (ERX1782389-ERR1712009) Canada's Michael Smith Genome Sciences Centre 3300018506 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com Benjamin Tully No Environmental Aquatic Unclassified Marine Unclassified Marine -34.0614 -73.1066 2032256 6319 0 0 2 6 0.0 Metatranscriptome 3300017515 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from English Channel in f/20 medium with seawater, no silicate, 18 C, 30 psu salinity and 321 ?mol photons light - Alexandrium tamarense CCMP 1771 (MMETSP0384) National Center for Genome Resources 3300017515 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Estuary marine 50.6 4.25 100177627 148456 19 29 44 62 0.0 Metatranscriptome 3300003162 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Avena fatua rhizosphere microbial communities - H4_Rhizo_Litter_21 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003162 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes mkfstone@berkeley.edu, nuccio1@llnl.gov; mkfstone@berkeley.edu Mary Firestone, Erin Nuccio; Mary Firestone No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.97364 -123.117453 101733812 294752 300 223 1280 1931 SRX3332182 Unrestricted 0.0 Metatranscriptome 3300041696 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_475 MetaT AgResearch, New Zealand, Mosgeil 3300041696 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 67229892 154935 222 47 1735 140 0.0 Metatranscriptome 3300012692 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES073 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012692 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.041 -89.686 74946827 149164 71 77 3755 2622 SRX3010922 Unrestricted 0.0 Metatranscriptome 3300017301 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in MLH medium with 10g/L glucose, double vitamins, at 27 C, 30 psu salinity and 259 ?mol photons light - Crypthecodinium cohnii Seligo (MMETSP0325_2) National Center for Genome Resources 3300017301 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 69984926 94718 0 1 0 1 0.0 Metatranscriptome 3300024534 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Colum_RepB_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024534 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 193226259 413938 87 188 1863 1506 SRX4547800 Unrestricted 28.41 Metatranscriptome 3300030609 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Bnb11 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030609 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 776749172 1644333 167 151 1768 801 SRX4547031 Unrestricted 0.0 Metatranscriptome 3300016927 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in f/2 medium, 20 C, 36 psu salinity and 689 ?mol photons light - Pseudo-nitzschia delicatissima B596 (MMETSP0327) National Center for Genome Resources 3300016927 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 40.8083 14.25 25561802 21997 18 4 38 8 0.0 Metatranscriptome 3300036144 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10CB15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036144 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 46054327 90378 425 1402 5076 4733 SRX8377722 Unrestricted 46.25 Metatranscriptome 3300017237 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Sargasso Sea in f/2 medium with seawater, no iron, 25 C, 35 psu salinity and 131 ?mol photons light - Thalassiosira oceanica CCMP 1005 (MMETSP0971) National Center for Genome Resources 3300017237 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 33.1833 -65.25 37990004 39297 2 5 1 10 0.0 Metatranscriptome 3300003159 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Avena fatua rhizosphere microbial communities - H3_Rhizo_Litter_14 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003159 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes mkfstone@berkeley.edu, nuccio1@llnl.gov; mkfstone@berkeley.edu Mary Firestone, Erin Nuccio; Mary Firestone No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.97364 -123.117453 4005913 7924 74 44 93 474 SRX2558067 Unrestricted 0.0 Metatranscriptome 3300012709 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES134 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012709 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 135801195 281652 101 182 932 3146 SRX3011167 Unrestricted 0.0 Metatranscriptome 3300030792 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030792 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7416 -117.7042 31119150 62666 53 26 119 193 SRX5351928 Unrestricted 20.18 Metatranscriptome 3300002339 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI - D_52min_Anaerobic no depletion (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002339 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes tmcmahon@cae.wisc.edu, tmcmahon@engr.wisc.edu; tmcmahon@cae.wisc.edu Sludge Phage users, Katherine McMahon; Trina McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.078418 -89.386482 996356 3183 12 23 153 110 SRX2554559 Unrestricted 0.0 Metatranscriptome 3300030022 *Microbiome Permanent Draft North Pond metatranscriptomes Metatranscriptome of crustal fluid microbial communities from North Pond, Mid-Atlantic Ridge, Atlantic Ocean - 1383CS 2014 Marine Biological Laboratory 3300030022 Metatranscriptome Analysis IDBA-UD v. 1.1.2 released by JGI data releasing policy No Yes lmseyler@gmail.com Lauren Seyler No Environmental Aquatic Oceanic Marine Crustal Fluids Oceanic crustal fluids 22.75 -46.083 1675909 2611 472 62 1493 379 0.0 Metatranscriptome 3300004636 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI048_150m_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004636 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 71916986 199420 1633 334 5094 1056 Unrestricted 0.0 Metatranscriptome 3300019181 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZI3 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019181 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 49.0431 13.617 14060435 30274 16 164 505 1068 SRX3937223 Unrestricted 0.0 Metatranscriptome 3300056919 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP13.1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056919 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 172603131 349589 16 19 92 98 Unrestricted 61.25 Metatranscriptome 3300011075 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 36 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011075 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 94465073 206524 185 413 13499 2009 Unrestricted 0.0 Metatranscriptome 3300024560 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepC_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024560 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 259313609 510846 34 153 436 1222 SRX4547616 Unrestricted 22.75 Metatranscriptome 3300038175 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_N3_C1_D1_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038175 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 98395263 205369 359 2055 2880 5404 SRX9390862 Unrestricted 90.81 Metatranscriptome 3300019023 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_145 - TARA_N000003231 Canada's Michael Smith Genome Sciences Centre 3300019023 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.2214 -70.0322 608436417 1178686 4 42 11 163 0.0 Metatranscriptome 3300037644 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_M1_C3_D5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037644 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 47976208 102205 255 254 3516 896 SRX9384031 Unrestricted 283.74 Metatranscriptome 3300028668 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_120m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028668 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 153319026 306788 248 35 3741 243 SRX5337945 Unrestricted 37.67 Metatranscriptome 3300032188 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant-associated microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col_C (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300032188 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9573 -83.9276 27271972 34818 2 3 5 7 SRX5787084, SRX5787085 Unrestricted 0.0 Metatranscriptome 3300017140 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in Aquil nutrients amended seawater with alpha-glycerophosphate, at 20 C, 35 psu salinity and 730 ?mol photons light - Emiliania huxleyi CCMP 370 (MMETSP1154) National Center for Genome Resources 3300017140 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 35875418 46305 2 6 2 10 0.0 Metatranscriptome 3300052741 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_164B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052741 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Bulk soil Soil 38.992973 -123.067448 98318290 257002 281 228 1741 1341 Unrestricted 160.31 Metatranscriptome 3300016792 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, no silica, at 16 C, 34 psu salinity and 426 ?mol photons light - Pavlova sp. CCMP459 (MMETSP1381) National Center for Genome Resources 3300016792 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 13475609 19012 15 10 10 21 0.0 Metatranscriptome 3300012740 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES018 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012740 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 33005861 71614 176 57 3100 1916 SRX3527133 Unrestricted 0.0 Metatranscriptome 3300035620 *Microbiome Permanent Draft Sediment microbial communities from Lake Washington near Medina, WA, United States Metatranscriptome of methane-enriched sediment microbial communities from Lake Washington, WA, United States - HO-FA-3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035620 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment sediment 47.6215 -122.2558 62380090 88533 6 55 10 113 SRX8379916 Unrestricted 234.65 Metatranscriptome 3300049091 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Metatranscriptome of beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - B2_RE3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049091 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Rectum rectum 49.2552 -122.5085 135570420 264997 0 0 81 11 Restricted 17.43 Metatranscriptome 3300053694 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T4_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053694 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 41176151 91703 15 1 175 21 Unrestricted 535.26 Metatranscriptome 3300008322 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.2.4LN.15dpc CCME-COLORADO 3300008322 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 5497354 23095 39 3 599 10 0.0 Metatranscriptome 3300048948 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 25 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048948 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 42.2817 -81.6717 36646847 86500 32 1 106 32 Restricted 20.48 Metatranscriptome 3300052434 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 6-S25Day7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052434 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 116508042 213954 32 15 99 81 Unrestricted 177.54 Metatranscriptome 3300017550 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in f/2 medium with seawater, 14 C, 36 psu salinity and 110 ?mol photons light - Ditylum brightwellii GSO103 (MMETSP1002) (SRX549029-SRR1294415) National Center for Genome Resources 3300017550 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 49.654 -127.436 5069658 10314 8 3 10 8 0.0 Metatranscriptome 3300032443 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day9_9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032443 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 30900802 53608 12 0 40 1 SRX6857978 Unrestricted 185.03 Metatranscriptome 3300017109 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of freshwater eukaryotic communities from unknown location in tryptone, yeast extract, sodium acetate, at 22 C, 0 psu salinity and 225 ?mol photons light - Polytomella parva SAG 63-3 (MMETSP0052_2) National Center for Genome Resources 3300017109 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 27891606 32414 0 1 0 1 0.0 Metatranscriptome 3300006279 *Microbiome Permanent Draft Prairie soil microbial communities from Kansas, USA, after rainfall Prairie soil microbial communities from Kansas, USA, after rainfall - K21 Oregon State University 3300006279 Metatranscriptome Analysis VELVET 1.2.10, combine 23, 27, 31 released per JGI data release policy No Yes lzeglin@ksu.edu Lydia Zeglin No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.1038 -96.6133 1851089 10977 7 4 13 2 0.0 Metatranscriptome 3300042574 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Metatranscriptome of estuarine water microbial communities from San Francisco Bay, California, United States - May19_FB_8_27D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042574 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 37.6183 -122.2916 22129779 49918 130 34 214 404 Unrestricted 39.76 Metatranscriptome 3300059504 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 23R_SD_T1_R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059504 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 346753536 858021 593 396 2362 2346 Unrestricted 45.83 Metatranscriptome 3300043288 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - Treefall.Jul19.R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043288 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.5322 -110.7965 8-9 46017411 96128 25 0 336 7 SRX10142346 Unrestricted 33.66 Metatranscriptome 3300052495 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 116-S78Day63 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052495 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 111238216 241830 42 4 124 52 Unrestricted 47.83 Metatranscriptome 3300054674 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_CO_009R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300054674 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0511 10.45713 228059766 577891 775 517 2737 2596 Unrestricted 61.95 Metatranscriptome 3300011078 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 50 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011078 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 94281017 212220 218 506 18920 2610 Unrestricted 0.0 Metatranscriptome 3300050689 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae axenic culture microbial communities from LLNL, Livermore, California, USA - f15_d2_W_S24 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050689 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 21650786 25547 4 0 3 7 Restricted 171.11 Metatranscriptome 3300031480 *Microbiome Permanent Draft Soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - STER_R6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031480 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thb15@psu.edu Terrence Bell No Engineered Artificial ecosystem Surface biofilm Soil microcosm Unclassified soil 40.7997 -77.8629 12052378 19161 16 0 54 8 SRX5811537 Unrestricted 309.74 Metatranscriptome 3300056992 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Frasne, France - Sphagnum fallax 1C_SF_FR (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056992 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 227170088 478626 209 144 509 612 Unrestricted 53.8 Metatranscriptome 3300009274 *Microbiome Permanent Draft Eukaryotic communities of water from Amazon river, Brazil and North Atlantic ocean Eukaryotic communities of water from the North Atlantic ocean - ACM10 University of Georgia 3300009274 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 167093372 474444 2 1 0 1 0.0 Metatranscriptome 3300052460 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 36-S49Day28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052460 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 158061967 300276 40 2 122 38 Unrestricted 56.7 Metatranscriptome 3300003711 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 18 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003711 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 4449949 12534 61 63 1439 393 Unrestricted 0.0 Metatranscriptome 3300036554 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen9, Rep 2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036554 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 80446921 114897 4 0 108 1 SRX8382702 Unrestricted 51.47 Metatranscriptome 3300022166 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022166 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9255 -83.5226 121911605 238498 473 1944 14218 13069 SRX4037132 Unrestricted 0.0 Metatranscriptome 3300003549 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_08_M0_20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003549 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 10680225 27025 154 32 544 726 SRX2518429 Unrestricted 0.0 Metatranscriptome 3300005420 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom. Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005420 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sgtringe@lbl.gov, rmmckay@bgsu.edu Susannah Tringe, Robert M. McKay No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.69957 -83.2941 306613318 800726 879 5352 2435 12921 SRX3195505 Unrestricted 0.0 Metatranscriptome 3300011312 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Pacific Ocean - MP2100 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011312 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 14.317 -118.4642 78002473 178853 73 75 3064 1031 SRX3327030 Unrestricted 0.0 Metatranscriptome 3300030541 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen0, Rep 3, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030541 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 43134553 41909 2 0 16 6 SRX5087090, SRX5087089 Unrestricted 0.0 Metatranscriptome 3300030640 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen0, Rep 3, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300030640 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 71927810 69817 2 2 9 4 SRX5087090, SRX5087089 Unrestricted 0.0 Metatranscriptome 3300048100 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P15SSC1_190913_f (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048100 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 103358418 256672 182 322 1880 1802 SRX20650849 Unrestricted 104.74 Metatranscriptome 3300051449 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T3_2 (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300051449 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 48884049 102574 42 14 110 58 Unrestricted 0.0 Metatranscriptome 3300047587 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_7_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047587 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 16304918 31392 1 0 16 0 Restricted 395.96 Metatranscriptome 3300010144 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_11_14_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010144 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment Wetland 41.224 -82.304 179293455 420591 706 2517 48038 19205 SRX2525128 Unrestricted 0.0 Metatranscriptome 3300008447 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities from natural whey culture milk in Italy - NWC.RNAseq.exp1 University of Naples 3300008447 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Fermented dairy products Dairy products Cheese Natural whey milk 23081 91 3 0 12 0 SRX1117659 0.0 Metatranscriptome 3300030927 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030927 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 30334139 59272 83 53 141 302 SRX5352577 Unrestricted 17.6 Metatranscriptome 3300030719 *Microbiome Permanent Draft Soil microbial communities from Risofladan, Vaasa, Finland Metatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - UN-2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030719 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes eva.hogfors-ronnholm@novia.fi Eva Hogfors-Ronnholm Yes Environmental Terrestrial Coastal area Soil Acid sulfate soil soil 63.0472 21.7116 51523379 98189 93 7 1648 33 SRX5356428 Unrestricted 0.0 Metatranscriptome 3300011299 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_D5L_HD (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300011299 Metatranscriptome Analysis megahit v. 1.0.6 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered Wastewater, WWTP Activated sludge Activated Sludge, Aerobic digester Unclassified Activated Sludge 48.3 16.2 53483942 125787 166 227 14288 3498 SRX3197665 Unrestricted 0.0 Metatranscriptome 3300031120 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E5_V_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031120 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 614318140 1612186 617 253 777 503 SRX3341591 Unrestricted 0.0 Metatranscriptome 3300022362 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States - S.677 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022362 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.178 -123.853 10795636 26892 134 313 3789 1275 SRX4018589 Unrestricted 0.0 Metatranscriptome 3300032425 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day14_9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032425 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 30249269 48221 8 0 32 2 SRX7582931 Unrestricted 242.18 Metatranscriptome 3300032697 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032697 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Unclassified Phyllosphere Unclassified phyllosphere 42.39 -85.37 421510836 784682 150 155 256 759 SRX7077713 Unrestricted 47.13 Metatranscriptome 3300009861 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 3, 6m depth; RNA IDBA-UD Marine Biological Laboratory 3300009861 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 6.52 3240421 8668 354 83 2013 310 0.0 Metatranscriptome 3300031882 *Microbiome Permanent Draft Microbial communities from the deep biosphere Metatranscriptome of alkaline spring water microbial communities from Santa Elena Complex in Costa Rica - Mur_UP re-assembly The Marine Biological Laboratory 3300031882 Metatranscriptome Analysis SPades v. 3.13.0 released by JGI data releasing policy No Yes jpayet@ceoas.oregonstate.edu Jerome P. Payet No Environmental Aquatic Alkaline Non-marine Saline and Alkaline Unclassified water 10.8939 -85.7273 22939285 115703 935 195 2231 309 SRX2065076 0.0 Metatranscriptome 3300018765 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_152 - TARA_N000002803 (ERX1782330-ERR1712010) Canada's Michael Smith Genome Sciences Centre 3300018765 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine 43.7056 -16.8794 156129826 372201 95 20 299 485 0.0 Metatranscriptome 3300047602 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_7_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047602 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 21333136 38379 5 0 29 1 Restricted 544.5 Metatranscriptome 3300042998 *Microbiome Permanent Draft Biological soil crust microbial communities from Mojave Desert, California, United States Metatranscriptome of biological soil crust microbial communities from Mojave Desert, CA, USA - LAC_S1_6hours_MT_FICUS_504271 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042998 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes erik@olemiss.edu Erik Hom No Environmental Terrestrial Soil crust Soil Unclassified biological soil crusts 34.1736 -115.3888 50133118 104439 199 140 1874 622 Unrestricted 45.18 Metatranscriptome 3300046419 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_59_Control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046419 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1359 -81.3652 22754955 55582 158 147 794 677 Unrestricted 102.45 Metatranscriptome 3300029836 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Gly2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029836 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 31984225 63017 7 9 354 69 SRX5355882 Unrestricted 121.3 Metatranscriptome 3300018991 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_076 - TARA_N000000884 (ERX1789359-ERR1719369) Canada's Michael Smith Genome Sciences Centre 3300018991 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -21.004 -35.3168 662379098 1295952 1 62 4 208 0.0 Metatranscriptome 3300008693 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-50 University of Hawaii 3300008693 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 3690756 7940 2 2 419 83 0.0 Metatranscriptome 3300042409 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_259 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042409 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 168756072 402032 122 267 1817 1376 Unrestricted 37.5 Metatranscriptome 3300049539 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_B_3_drought (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049539 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 171188457 408677 321 159 1588 1068 Unrestricted 100.85 Metatranscriptome 3300046560 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - P3-R1-A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046560 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.0477 128450869 291319 137 104 510 430 Unrestricted 40.58 Metatranscriptome 3300004554 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 51 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004554 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 44607578 160141 2301 1125 8099 2636 Unrestricted 0.0 Metatranscriptome 3300019254 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019254 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 208143503 501919 872 2394 54893 17868 SRX3939792 Unrestricted 0.0 Metatranscriptome 3300049493 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 81a (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049493 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.9364 -81.6542 27093107 48516 36 5 65 47 Restricted 0.0 Metatranscriptome 3300017201 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Baffin Bay in K medium with sea water, urea and antibiotics, no NH4Cl, 6 C, 33 psu salinity and 568 ?mol photons light - unclassified eukaryote CCMP 2298 (MMETSP1142) National Center for Genome Resources 3300017201 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 77.0014 -77.2383 27590174 35996 11 11 19 20 0.0 Metatranscriptome 3300006728 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP2967 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006728 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 32.08 -17.27 143527172 471431 2508 3300 6675 10145 SRX3299182 Unrestricted 0.0 Metatranscriptome 3300053778 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 31 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053778 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 42.4295 -81.2044 3656062 5556 1 0 16 5 Restricted 0.0 Metatranscriptome 3300046595 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - G2-R1-B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046595 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3569 19.0504 115576300 251292 112 74 281 234 Unrestricted 32.26 Metatranscriptome 3300041900 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_491 MetaT_extra_run AgResearch, New Zealand, Mosgeil 3300041900 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 4994045 11542 396 203 2162 274 0.0 Metatranscriptome 3300019048 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_085 - TARA_N000001030 (ERX1782209-ERR1712166) Canada's Michael Smith Genome Sciences Centre 3300019048 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -62.2231 -49.2139 687955759 1524104 123 51 254 356 0.0 Metatranscriptome 3300017337 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 4 C, 31 psu salinity and 732 ?mol photons light - Dinophysis acuminata DAEP01 (MMETSP0797) National Center for Genome Resources 3300017337 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 73920171 107705 38 2 63 11 0.0 Metatranscriptome 3300024865 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Colum_RepC_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024865 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 277415558 565733 104 158 1108 1828 SRX4547696 Unrestricted 18.34 Metatranscriptome 3300059664 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_4 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059664 Metatranscriptome Analysis megahit v. 2021-11-04 02:39:13 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 80911799 185821 145 26 371 176 Unrestricted 0.0 Metatranscriptome 3300028751 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Gln2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028751 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 42281202 80024 6 1 151 1 SRX5356201 Unrestricted 43.39 Metatranscriptome 3300009296 *Microbiome Permanent Draft Microbial communities from groundwater in Rifle, Colorado, USA Microbial communities from groundwater in Rifle, Colorado, USA-3A_0.2um Lawrence Berkeley National Laboratory 3300009296 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 39.32 -107.46 642458765 1168988 102 0 606 8 0.0 Metatranscriptome 3300021845 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States - R876 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021845 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 46.217 -123.781 48441628 111544 348 521 2386 6302 SRX4015220 Unrestricted 0.0 Metatranscriptome 3300003698 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - water-only treatment rep 2 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003698 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.099444 -73.604444 28283357 85787 10 247 229 2054 SRX2552956, SRX2552957 Unrestricted 0.0 Metatranscriptome 3300046218 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_4_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046218 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 18282870 35706 1 0 23 3 Restricted 424.41 Metatranscriptome 3300046250 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_2_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046250 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 101296407 159991 7 43 142 265 Restricted 186.7 Metatranscriptome 3300009915 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 7, surface; RNA IDBA-UD Marine Biological Laboratory 3300009915 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 7.56 14176414 37765 442 232 2606 964 0.0 Metatranscriptome 3300052399 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 0_50_10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052399 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 28981743 70692 392 406 2528 2495 Unrestricted 129.27 Metatranscriptome 3300018810 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_128 - TARA_N000002291 (ERX1789538-ERR1719380) Canada's Michael Smith Genome Sciences Centre 3300018810 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine 0.0222 -153.6858 188984318 454433 8 41 55 294 0.0 Metatranscriptome 3300039029 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of photosynthetic mat microbial communities from Mushroom Spring, YNP, Wyoming, United States - 20090730 1600 sample R14cd (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300039029 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 141000142 344054 1 0 71 0 SRX9720693 Unrestricted 190.92 Metatranscriptome 3300037016 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Growout1_02 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037016 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 309042216 648679 688 42 1243 959 SRX8818268 Unrestricted 24.76 Metatranscriptome 3300017020 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in L1 medium with NH4Cl, 24 C, 32 psu salinity and 753 ?mol photons light - Chrysoreinhardia sp. CCMP3193 (MMETSP1166) National Center for Genome Resources 3300017020 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 42.572 8.73 24262056 28255 22 8 30 9 0.0 Metatranscriptome 3300052401 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 0_100_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052401 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 24098858 59306 365 452 3038 2807 Unrestricted 111.81 Metatranscriptome 3300036353 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of sediment microbial communities from Prado wetlands, California, USA - CSM_Prado_Oct18_PM3_1.5z2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036353 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 124095792 251587 7 52 50 394 SRX8743752 Unrestricted 41.11 Metatranscriptome 3300012400 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012400 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 190205374 452919 72 861 4040 5654 Unrestricted 0.0 Metatranscriptome 3300019143 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_065 - TARA_N000000963 (ERX1782306-ERR1712244) Canada's Michael Smith Genome Sciences Centre 3300019143 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -35.1728 26.2868 167827991 446345 38 55 186 450 0.0 Metatranscriptome 3300059630 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 165R_SD_T3_R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059630 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 307503899 770876 521 309 2581 2094 Unrestricted 62.77 Metatranscriptome 3300018858 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_125 - TARA_N000002021 (ERX1789628-ERR1719293) Canada's Michael Smith Genome Sciences Centre 3300018858 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.9124 -142.5595 199807209 526705 3 19 12 140 0.0 Metatranscriptome 3300009402 *Microbiome Permanent Draft Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica - 4B J. Craig Venter Institute (JCVI) 3300009402 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ice edge, McMurdo Sound, Antarctica -77.36 164.28 131949842 379111 25 2 44 68 0.0 Metatranscriptome 3300052887 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 86-S41Day63 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052887 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 200086753 414081 26 7 110 33 Unrestricted 60.55 Metatranscriptome 3300018973 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_109 - TARA_N000001742 (ERX1789408-ERR1719300) Canada's Michael Smith Genome Sciences Centre 3300018973 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 2.0574 -84.5546 422985180 818098 0 19 8 110 0.0 Metatranscriptome 3300008671 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-54 University of Hawaii 3300008671 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 1801972 3556 1 2 184 29 0.0 Metatranscriptome 3300008570 *Microbiome Permanent Draft Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France - CSM2012-MB-F-D Centre National de la Recherche Scientifique (CNRS) 3300008570 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Microbial mats Freshwater lake 14919608 46908 384 226 3639 1701 SRX528801 0.0 Metatranscriptome 3300048602 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_1_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048602 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 51356749 78133 1 0 17 2 Restricted 155.0 Metatranscriptome 3300035588 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - 28K (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035588 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4336 16.6836 137282200 280931 170 266 2599 1139 SRX8209537 Unrestricted 51.23 Metatranscriptome 3300017234 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in f/2-R medium with seawater, 210 ?M silicate, -2 C, 35 psu salinity and 502 ?mol photons light - Fragilariopsis kerguelensis L2-C3 (MMETSP0906) National Center for Genome Resources 3300017234 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -48.1 -24.25 42892055 60917 16 2 23 4 0.0 Metatranscriptome 3300036147 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10NB15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036147 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 45928790 87013 412 1201 6185 4448 SRX8377975 Unrestricted 42.31 Metatranscriptome 3300016924 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in GSe medium with ammonium, 22 C, 32 psu salinity and 105 ?mol photons light - Pelagomonas calceolata CCMP 1756 (MMETSP0886) National Center for Genome Resources 3300016924 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 30.8333 -136.8333 18192204 21994 3 6 4 7 0.0 Metatranscriptome 3300024537 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepC_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024537 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 147792267 316820 73 155 1144 1337 SRX4547601 Unrestricted 29.37 Metatranscriptome 3300037686 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Metatranscriptome of lab enriched marine microbial communities from Marineland, Florida, USA - SW_R1_TP1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037686 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6475 -82.3464 139734579 293584 268 52 659 290 SRX9142683 Unrestricted 96.86 Metatranscriptome 3300023654 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLU5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023654 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 49.0448 13.618 7968844 15400 52 202 1349 1311 SRX5243273, SRX4455179 Unrestricted 0.0 Metatranscriptome 3300030899 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T24 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030899 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 33151094 62583 58 20 87 130 SRX5352354 Unrestricted 20.62 Metatranscriptome 3300028849 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Thr1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028849 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 47689737 91826 5 10 93 47 SRX5356191 Unrestricted 84.2 Metatranscriptome 3300004794 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SN (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004794 Metatranscriptome Analysis megahit v. 0.2.0 No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 597247864 1569447 1746 948 4598 5968 SRX2518249 Unrestricted 0.0 Metatranscriptome 3300039283 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Metatranscriptome of marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_100m_C4_0cm5cm (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300039283 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 37.1343 -121.4557 89296260 184494 301 2090 3061 8946 SRX9572979 Unrestricted 134.59 Metatranscriptome 3300018905 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_152 - TARA_N000002775 (ERX1789358-ERR1719472) Canada's Michael Smith Genome Sciences Centre 3300018905 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 43.7056 -16.8794 234011038 553004 6 12 20 211 0.0 Metatranscriptome 3300003556 *Microbiome Permanent Draft Arabidopsis, maize, boechera and miscanthus rhizosphere microbial communities from different US locations Arabidopsis rhizosphere microbial communities from the University of North Carolina, USA - metaT NBMF1_09_fullP_nobac_d2 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003556 Metatranscriptome Analysis rnnotator v. 3.3.1 Reverted to private per Tijana Glavina del Rio (Oct 2014) No Yes dangl@email.unc.edu Jeff Dangl No Host-associated Plants Rhizosphere Roots Unclassified Arabidopsis rhizosphere 35.9082 -79.0499 48533236 68322 0 0 0 0 SRX2557234, SRX2557233 Unrestricted 0.0 Metatranscriptome 3300016812 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in L1 medium with seawater, 25 C, 31 psu salinity and 673 ?mol photons light - Symbiodinium kawagutii CCMP 2468 (MMETSP0133_2) National Center for Genome Resources 3300016812 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 21.25 -158.0 3083594 7745 0 0 1 0 0.0 Metatranscriptome 3300002885 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_100m_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002885 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 48975819 122497 96 81 653 935 Unrestricted 0.0 Metatranscriptome 3300017260 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in filtered seawater, 15 C, 29.4 psu salinity and 425 ?mol photons light - Favella taraikaensis Fe Narragansett Bay (MMETSP0434) National Center for Genome Resources 3300017260 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 41.30051 -71.71543 34357746 67870 98 21 173 49 0.0 Metatranscriptome 3300037647 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_N3_C1_D2_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037647 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 42356542 77503 533 1874 6168 4804 SRX9385107 Unrestricted 147.56 Metatranscriptome 3300010253 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0600 MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010253 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 115212314 226883 2844 87 22753 398 SRX2521838, SRX2521839 Unrestricted 0.0 Metatranscriptome 3300026449 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 56R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026449 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 173131775 344296 164 32 187 344 SRX4795896 Unrestricted 28.06 Metatranscriptome 3300041734 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_315 MetaT AgResearch, New Zealand, Mosgeil 3300041734 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 49618320 105225 168 42 1159 190 0.0 Metatranscriptome 3300007486 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B_top_diel_T=5 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007486 Metatranscriptome Analysis megahit v. 0.2.0 No Yes binskeep@montana.edu, binskeep@montana.edu; jim.fredrickson@pnnl.gov William Inskeep, William P. Inskeep; Jim Fredrickson No Environmental Aquatic Unclassified Thermal springs Unclassified Microbial mats 44.7219 -110.7021 12456746 36350 3999 9 6003 31 SRX5333037 Unrestricted 0.0 Metatranscriptome 3300008878 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of annulated tree boas from Steinhart Aquarium in San Francisco, USA - CAS03_Lung University of California, San Francisco 3300008878 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Lung Respiratory system Unclassified Lung 3011888 9163 0 0 0 0 SRX170610 0.0 Metatranscriptome 3300051248 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Lindberg, Bavaria, Germany - BW_TH_011R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051248 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 49.039609 13.314697 17456436 44912 121 201 507 729 Unrestricted 62.41 Metatranscriptome 3300007322 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_D6L_HD (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007322 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 117978073 354610 21015 9235 65028 22615 SRX3197705 Unrestricted 0.0 Metatranscriptome 3300019125 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_152 - TARA_N000002761 (ERX1782425-ERR1712222) Canada's Michael Smith Genome Sciences Centre 3300019125 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 43.6858 -16.8474 117899617 288017 90 20 324 267 0.0 Metatranscriptome 3300018651 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_078 - TARA_N000001512 (ERX1782264-ERR1711863) Canada's Michael Smith Genome Sciences Centre 3300018651 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -30.1403 -43.2641 96552975 216694 8 34 37 393 0.0 Metatranscriptome 3300006572 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006572 Metatranscriptome Analysis megahit v. 0.2.0 No Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil 45.54 -73.72 552932982 1991416 102 132 253 371 SRX2522009 Unrestricted 0.0 Metatranscriptome 3300018550 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS675_3p0 J. Craig Venter Institute (JCVI) 3300018550 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 62.09708 18.5427 4543866 13994 19 23 445 413 0.0 Metatranscriptome 3300047341 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_3_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047341 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 63146259 97864 4 0 17 0 Restricted 257.56 Metatranscriptome 3300008953 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier in Georgia, USA Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT4 Georgia Institute of Technology 3300008953 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Lake Lanier in Georgia, USA 61801240 229954 241 81 2282 881 0.0 Metatranscriptome 3300031009 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 10 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031009 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ake.olson@slu.se; francis.martin@inrae.fr Ake Olson; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 411268639 925587 555 144 1202 330 SRX3345014 Unrestricted 0.0 Metatranscriptome 3300017295 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of freshwater ice eukaryotic communities from Arabian Sea in MWC medium with 4.55 nmol/L selenium, 3 C, 0 psu salinity and 303 ?mol photons light - Peridinium aciculiferum PAER-2 (MMETSP0370) National Center for Genome Resources 3300017295 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Ice Freshwater Unclassified freshwater ice 18.6 59.85 63798507 94532 0 1 0 1 0.0 Metatranscriptome 3300018518 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_132 - TARA_N000002416 (ERX1782323-ERR1711987) Canada's Michael Smith Genome Sciences Centre 3300018518 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 31.5213 -158.9958 15799454 37644 13 7 131 161 0.0 Metatranscriptome 3300046600 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-41 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046600 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4199 -64.1151 87963818 209955 538 16 869 190 Unrestricted 18.18 Metatranscriptome 3300055311 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP15.2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055311 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 175739503 369339 0 0 23 2 Unrestricted 90.31 Metatranscriptome 3300030559 *Microbiome Permanent Draft Metatranscriptome of decayed wood fungal communities from Pinus contorta in National Forests from Montana, United States Metatranscriptome of plant litter fungal communities from Pinus contorta in Tenderfoot Creek Experimental Forest, Montana, United States - TCEF2-LITTER (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030559 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes dcullen@wisc.edu Daniel Cullen No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 46.9233 -110.8694 235135082 519579 29 12 102 76 SRX4804556 Unrestricted 0.0 Metatranscriptome 3300017350 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from South Atlantic Ocean in Standard Aquil medium with 100 uM EDTA, 4 C, 32 psu salinity and 127 ?mol photons light - Fragilariopsis kerguelensis L26-C5 (MMETSP0736) National Center for Genome Resources 3300017350 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -48.0 -16.0 48984678 70088 6 1 6 1 0.0 Metatranscriptome 3300006939 *Microbiome Permanent Draft Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, for analyzing deforestation at different spatial scales Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A10 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300006939 Metatranscriptome Analysis megahit v. 0.2.0 No Yes nusslein@microbio.umass.edu Nusslein, Klaus, Klaus Nusslein No Environmental Terrestrial Tropical forest Soil Unclassified Tropical rainforest soil -10.0 -62.0 149048857 567201 13314 1556 64846 5208 SRX2518430 Unrestricted 0.0 Metatranscriptome 3300009216 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from the North Atlantic ocean - ACM47 University of Georgia 3300009216 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 230151806 657677 40 81 246 179 0.0 Metatranscriptome 3300012962 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012962 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 39.2637 -76.0017 121444227 259749 251 555 4491 7571 SRX3007427 Unrestricted 0.0 Metatranscriptome 3300009199 *Microbiome Permanent Draft Microbial communities of wastewater sludge from Singapore Microbial communities of wastewater sludge from Singapore - Sludge7_b2_February Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300009199 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified Wastewater sludge 1.2 103.45 512525954 2034397 6586 1204 48877 4220 SRX373540 0.0 Metatranscriptome 3300059663 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_3 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059663 Metatranscriptome Analysis megahit v. 2021-11-04 00:55:55 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 86211254 206884 169 35 390 186 Unrestricted 0.0 Metatranscriptome 3300003551 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF147 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003551 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.53312 -72.189707 16382944 48644 106 641 1004 2853 SRX2014433 Unrestricted 0.0 Metatranscriptome 3300007613 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S19 Surf_A metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007613 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 152253630 463206 900 2007 3248 6293 SRX3787218 Unrestricted 0.0 Metatranscriptome 3300017318 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Baffin Bay in ProV 50 medium with seawater and antibiotics, 6 C, 32 psu salinity and 528 ?mol photons light - unclassified eukaryote CCMP 2293 (MMETSP0987) National Center for Genome Resources 3300017318 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 78.5922 -74.4922 41499960 58882 4 10 3 8 0.0 Metatranscriptome 3300041446 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaT AgResearch, New Zealand, Mosgeil 3300041446 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Rhizoplane Roots Dairy farm pasture -43.648506 172.343549 33685091 66302 293 237 1022 604 0.0 Metatranscriptome 3300017072 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in 0.2u filtered seawater with ES enrichments, NH4, 15 C, 33 psu salinity and 468 ?mol photons light - Pseudo-nitzschia australis 10249 10 AB (MMETSP0140_2) National Center for Genome Resources 3300017072 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 36.60369 -121.88927 29232211 30800 10 2 12 1 0.0 Metatranscriptome 3300029697 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepC_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029697 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 153570984 327121 114 99 520 733 SRX5338560 Unrestricted 31.33 Metatranscriptome 3300055316 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - m13.1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055316 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 161530278 348085 4 0 14 5 Unrestricted 123.19 Metatranscriptome 3300049107 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 66 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049107 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.7385 -82.2743 18874187 27514 28 3 44 29 Restricted 46.91 Metatranscriptome 3300030562 *Microbiome Permanent Draft Metatranscriptome of decayed wood fungal communities from Pinus contorta in National Forests from Montana, United States Metatranscriptome of decayed wood fungal communities from Pinus contorta in Tenderfoot Creek Experimental Forest, Montana, United States - TCEF3-2W (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030562 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes dcullen@wisc.edu Daniel Cullen No Host-associated Plants Stem Phyllosphere Wood decay decayed wood 46.9239 -110.8719 194952928 439750 19 8 45 46 SRX4804584 Unrestricted 0.0 Metatranscriptome 3300010897 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS5_55_TP2_13H Marine Biological Laboratory 3300010897 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933 -130.014 712504 1785 10 4 32 2 0.0 Metatranscriptome 3300012959 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES150 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012959 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 77593235 169729 129 156 1304 2925 SRX3011207, SRX3011208 Unrestricted 0.0 Metatranscriptome 3300046298 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_6_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046298 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 60064087 98618 3 0 22 1 Restricted 109.29 Metatranscriptome 3300047346 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_3_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047346 Metatranscriptome Analysis megahit v. 2021-08-26 11:26:44 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated, Environmental Arthropoda, Terrestrial Insects nest Ant dump, Nest Nest dump ant dump 43.0765 -89.412 123670960 189888 2 0 23 1 Restricted 108.61 Metatranscriptome 3300045460 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P15SSC1_191107_i (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300045460 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 23519079 55556 35 211 1171 1193 SRX20650854 Unrestricted 503.79 Metatranscriptome 3300016945 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with Sargasso seawater w/o silicate, 14 C, 36 psu salinity and 414 ?mol photons light - Skeletonema marinoi skelA (MMETSP0920) National Center for Genome Resources 3300016945 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Estuary marine 41.573611 -71.408611 21304266 31834 8 5 12 4 0.0 Metatranscriptome 3300018656 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_093 - TARA_N000001292 (ERX1789469-ERR1719513) Canada's Michael Smith Genome Sciences Centre 3300018656 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -34.0614 -73.1066 108667337 218477 1 6 2 30 0.0 Metatranscriptome 3300051612 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 168_50_10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051612 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 19858972 53097 101 145 814 839 Unrestricted 286.92 Metatranscriptome 3300019144 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_080 - TARA_N000001503 (ERX1789695-ERR1719376) Canada's Michael Smith Genome Sciences Centre 3300019144 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -40.6487 -52.1511 525131958 999301 1 14 6 61 0.0 Metatranscriptome 3300052762 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_69 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052762 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 69979390 185734 108 122 646 658 Unrestricted 100.72 Metatranscriptome 3300019267 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071402VT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019267 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 363206634 793528 238 376 2954 3563 SRX3921425 Unrestricted 0.0 Metatranscriptome 3300008428 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - PM93.FECAL.14dpc CCME-COLORADO 3300008428 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 3464089 13642 20 1 430 10 0.0 Metatranscriptome 3300030948 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E7_V_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030948 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 214952585 657275 635 335 1096 846 SRX3341777 Unrestricted 0.0 Metatranscriptome 3300004567 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 9_HOW4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004567 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 17436489 51520 2708 763 6171 2006 SRX2779754 Unrestricted 0.0 Metatranscriptome 3300018974 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_066 - TARA_N000000809 (ERX1782160-ERR1711971) Canada's Michael Smith Genome Sciences Centre 3300018974 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -34.9449 17.9189 639570608 1161288 72 57 318 777 0.0 Metatranscriptome 3300028112 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepB_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028112 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 316601283 662207 101 176 1062 1752 SRX5245739 Unrestricted 17.52 Metatranscriptome 3300049628 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P11SSC1_191110_c (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300049628 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 91788409 216748 78 239 932 1182 Unrestricted 0.0 Metatranscriptome 3300043832 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA6 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043832 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Unclassified Soil Unclassified soil 35.7877 -78.6442 59500911 129928 221 334 2050 2245 Unrestricted 37.4 Metatranscriptome 3300052759 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_5B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052759 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Bulk soil Soil 38.992973 -123.067448 127073043 335542 228 191 1667 1110 Unrestricted 70.28 Metatranscriptome 3300037681 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Metatranscriptome of soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_July_plot5_rep2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037681 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6541 -80.6298 175279943 405833 716 546 5163 2796 SRX9139676 Unrestricted 32.81 Metatranscriptome 3300018865 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_111 - TARA_N000001824 (ERX1789688-ERR1719211) Canada's Michael Smith Genome Sciences Centre 3300018865 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -16.9763 -100.6794 223385991 524737 4 43 16 403 0.0 Metatranscriptome 3300003705 *Microbiome Permanent Draft Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, for analyzing deforestation at different spatial scales Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003705 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes nusslein@microbio.umass.edu Nusslein, Klaus, Klaus Nusslein No Environmental Terrestrial Tropical forest Soil Unclassified Tropical rainforest soil -10.0 -62.0 5040885 10322 398 817 2736 2046 SRX5329108 Unrestricted 0.0 Metatranscriptome 3300017233 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in enriched f/2 medium with seawater, 27 C, 0 psu salinity and 313 ?mol photons light - Astrosyne radiata 13vi08-1A (MMETSP0418) National Center for Genome Resources 3300017233 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 13.4427 144.6428 25447972 38204 57 13 98 21 0.0 Metatranscriptome 3300016923 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Atlantic Ocean in L1 medium, 16 C, 25 psu salinity and 192 ?mol photons light - Alexandrium minutum CCMP 113 (MMETSP0328) National Center for Genome Resources 3300016923 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 42.23 -8.8 10709919 21472 3 0 1 1 0.0 Metatranscriptome 3300052406 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 3_50_9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052406 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 236320059 593793 304 281 2417 1850 Unrestricted 35.95 Metatranscriptome 3300041715 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_131 MetaT AgResearch, New Zealand, Mosgeil 3300041715 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 28926440 58741 267 97 2241 296 0.0 Metatranscriptome 3300030819 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T34 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030819 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 26517686 49857 35 27 78 166 SRX5352842 Unrestricted 16.17 Metatranscriptome 3300004793 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004793 Metatranscriptome Analysis megahit v. 0.2.0 No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 583366110 1552122 3010 1291 8134 6858 SRX2518349 Unrestricted 0.0 Metatranscriptome 3300039284 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Metatranscriptome of marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_3000m_C1_0cm (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300039284 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.799 -121.0256 191425009 413517 430 1623 5372 6872 SRX9603888 Unrestricted 63.05 Metatranscriptome 3300037888 *Microbiome Permanent Draft Marine planktonic microbial communities from Bay of Bengal, Indian Ocean Metatranscriptome of marine planktonic microbial communities from Bay of Bengal, Indian Ocean - 3T (SRX5580374-SRR8790601) Nanyang Technological University 3300037888 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. released by JGI data releasing policy Yes Yes flauro@ntu.edu.sg Federico Lauro No Environmental Aquatic Unclassified Marine Unclassified Marine planktonic 5.96 89.47 43324506 200846 1299 188 4250 2862 0.0 Metatranscriptome 3300010254 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1400(2)_B MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010254 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 106751764 238280 636 4 6938 35 SRX2521782, SRX2521783 Unrestricted 0.0 Metatranscriptome 3300061838 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 84_sorghum_1_T21 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061838 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 24080345 60765 56 66 519 490 Unrestricted 348.63 Metatranscriptome 3300028756 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Pro2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028756 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 49940936 98548 9 12 218 53 SRX5356172 Unrestricted 100.11 Metatranscriptome 2061766006 *Microbiome Permanent Draft Hypersaline mat water microbial communities from Elkhorn Slough, California, USA Elkhorn Slough cyanobacterial mat Day DOE Joint Genome Institute (JGI) 2061766006 Metatranscriptome Analysis No Yes sgtringe@lbl.gov Susannah Tringe Yes 23190731 Environmental Aquatic Saline Non-marine Saline and Alkaline Microbial mats Hypersaline mat water 36.82188 -121.744 32087622 82867 22 0 273 0 0.0 Metatranscriptome 3300019027 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_070 - TARA_N000000678 (ERX1782477-ERR1711924) Canada's Michael Smith Genome Sciences Centre 3300019027 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -20.4091 -3.1759 645141428 1681212 125 58 757 1256 0.0 Metatranscriptome 3300041733 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_290 MetaT AgResearch, New Zealand, Mosgeil 3300041733 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 28024398 60541 249 253 1257 483 0.0 Metatranscriptome 3300016892 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, no silica, at 16 C, 34 psu salinity and 253 ?mol photons light - Isochrysis sp. CCMP 1324 (MMETSP1129) National Center for Genome Resources 3300016892 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 26023053 28513 2 5 1 9 0.0 Metatranscriptome 3300031571 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB9_535_32.3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031571 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 77.9995 -150.0065 159561779 326671 112 45 366 1051 SRX5652362 Unrestricted 0.0 Metatranscriptome 3300055391 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Metatranscriptome of sediment microbial communities from freshwater Prado Wetlands in Corona, California, USA - CSM_Prado_Oct18_PM_2.5z2 (Eukaryote Community Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300055391 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Wetlands Freshwater Sediment Sediment 33.919031 -117.617686 44690696 53411 4 4 23 4 Unrestricted 0.0 Metatranscriptome 3300021912 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S7 C1 B21 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021912 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 36.529698 -13.939981 112420756 219797 142 95 263 355 SRX5295801 Unrestricted 0.0 Metatranscriptome 3300018598 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_022 - TARA_A100000536 (ERX1782248-ERR1712090) Canada's Michael Smith Genome Sciences Centre 3300018598 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.8312 17.3952 59228476 123360 2 31 14 231 0.0 Metatranscriptome 3300017215 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Arctic Ocean in K/2 medium, 4 C, 35 psu salinity and 490 ?mol photons light - unclassified eukaryote RCC 2288 (MMETSP1326) National Center for Genome Resources 3300017215 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 70.5 -135.5 25177826 37057 11 1 15 5 0.0 Metatranscriptome 3300036289 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen9, Rep 1, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036289 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 14961643 16781 2 0 2 3 SRX8381230, SRX8381229 Unrestricted 0.0 Metatranscriptome 3300023682 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023682 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 49.044 13.617 26588730 37602 9 30 274 264 SRX4454738, SRX5243121 Unrestricted 0.0 Metatranscriptome 3300046079 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-199 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046079 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4199 -64.1151 228378065 544690 620 36 1236 646 Unrestricted 21.98 Metatranscriptome 3300030602 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO133-ANR018SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030602 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2719 -71.2088 688488479 1498726 107 160 4179 2632 SRX4010657 Unrestricted 0.0 Metatranscriptome 3300012699 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES110 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012699 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.041 -89.686 109720716 209366 50 93 933 3196 SRX3010990 Unrestricted 0.0 Metatranscriptome 3300008778 *Microbiome Permanent Draft Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico - 300m_0.2-1.6micron Georgia Institute of Technology 3300008778 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hypoxic zone Marine Unclassified Ocean water 18.9 -104.5 1579973 3065 11 3 781 16 SRX854084 0.0 Metatranscriptome 3300012224 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_4_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012224 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 137029129 333283 84 759 5409 6957 Unrestricted 0.0 Metatranscriptome 3300032875 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_26JUN2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032875 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.372 123213561 212464 62 37 88 241 SRX7519608 Unrestricted 67.28 Metatranscriptome 3300016712 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Indian Ocean in artificial seawater with 1% horse serum and 0.8% agar, 23 C, 25 psu salinity and 295 ?mol photons light - Schizochytrium aggregatum ATCC 28209 (MMETSP0963) National Center for Genome Resources 3300016712 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 8.0 53.0 12981615 19243 7 1 9 1 0.0 Metatranscriptome 3300006688 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP1089 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006688 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -29.81 82.62 49337073 135032 756 2396 2452 5412 SRX3299444 Unrestricted 0.0 Metatranscriptome 3300018996 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_072 - TARA_N000000839 (ERX1782178-ERR1712156) Canada's Michael Smith Genome Sciences Centre 3300018996 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.7484 -17.9179 513085244 1240376 72 60 287 542 0.0 Metatranscriptome 3300018537 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_139 - TARA_N000003035 (ERX1789644-ERR1719455) Canada's Michael Smith Genome Sciences Centre 3300018537 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 6.4998 -94.9527 13497067 34674 0 0 4 9 0.0 Metatranscriptome 3300032444 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day9_9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032444 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 30251369 49328 7 0 24 3 SRX6857984 Unrestricted 190.7 Metatranscriptome 3300036582 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Metatranscriptome of forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036582 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 242136340 569965 66 306 701 1183 SRX8240608 Unrestricted 59.48 Metatranscriptome 3300017206 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, no silicate, 15 C, 29.4 psu salinity and 163 ?mol photons light - Heterosigma akashiwo NB (MMETSP0416) National Center for Genome Resources 3300017206 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Estuary marine 41.65583 -71.44778 31380572 55278 48 8 73 10 0.0 Metatranscriptome 3300042573 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Metatranscriptome of estuarine water microbial communities from San Francisco Bay, California, United States - Feb19_FB_7_27D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042573 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 37.6183 -122.2916 36654917 80127 121 276 358 1758 Unrestricted 39.86 Metatranscriptome 3300059503 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 21R_SD_T1_R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059503 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 328382292 808691 413 300 1743 1781 Unrestricted 40.59 Metatranscriptome 3300061897 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 38_cerealrye_3_T0 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061897 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 87999021 235990 236 200 1443 1375 Unrestricted 173.6 Metatranscriptome 3300004607 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 36 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004607 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 127888518 360265 7016 2780 26752 5839 Unrestricted 0.0 Metatranscriptome 3300009866 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 3, 12m depth; RNA IDBA-UD Marine Biological Laboratory 3300009866 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 6.93 7249052 17769 2299 78 9043 182 0.0 Metatranscriptome 3300008370 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34691 J. Craig Venter Institute (JCVI) 3300008370 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 18846 62 0 0 1 0 0.0 Metatranscriptome 3300054673 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_TH_008R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300054673 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0513 10.45377 188059734 481970 743 595 2641 2855 Unrestricted 62.52 Metatranscriptome 3300002644 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI074_200m_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002644 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 2230905 5339 2 11 71 253 Unrestricted 0.0 Metatranscriptome 3300004970 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004970 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 97724775 333186 8045 3064 27622 7561 Unrestricted 0.0 Metatranscriptome 3300030799 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Wood GP-3A (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030799 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dcullen@wisc.edu; francis.martin@inrae.fr Daniel Cullen; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 45.7589 -113.9119 608137088 1486923 1148 593 2475 691 SRX3344917 Unrestricted 0.0 Metatranscriptome 3300028749 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Met2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028749 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 28661689 53818 6 12 292 47 SRX5356186 Unrestricted 120.42 Metatranscriptome 3300041706 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_490 MetaT AgResearch, New Zealand, Mosgeil 3300041706 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 61737167 137016 271 70 2244 143 0.0 Metatranscriptome 3300012702 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES114 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012702 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 110941763 228577 88 138 609 3257 SRX3011050 Unrestricted 0.0 Metatranscriptome 3300036553 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen6, Rep 2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036553 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 84281589 120905 3 0 88 0 SRX8382158 Unrestricted 50.23 Metatranscriptome 3300021240 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from nest from French Guiana - 11-5 mRNA SA University of Luxembourg 3300021240 Metatranscriptome Analysis CLC Genomics Workbench Version 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 5.06224 -53.047407 61789171 237975 1 6 4 29 0.0 Metatranscriptome 3300024550 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepB_0h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024550 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 250897109 495878 91 337 1184 2252 SRX4547666 Unrestricted 19.33 Metatranscriptome 3300010143 *Microbiome Permanent Draft Soil microbial communities from various locations in USA and Cambodia to study soil gas exchange rates Soil microbial communities from Mekong Delta, Cambodia to study soil gas exchange rates - MK-CA-DRY metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010143 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Grasslands Soil Unclassified Soil 11.5058 105.0087 146941622 361022 310 406 35230 4470 SRX2525534 Unrestricted 0.0 Metatranscriptome 3300046140 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-160 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046140 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4757 -64.2279 62868003 155571 625 27 1066 339 Unrestricted 19.15 Metatranscriptome 3300028080 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepA_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028080 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 111195014 217954 53 79 135 412 SRX5245682 Unrestricted 36.09 Metatranscriptome 3300032617 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red4_22May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032617 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 1325509564 2172031 21 11 29 163 SRX6410110 Unrestricted 17.61 Metatranscriptome 3300018758 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_135 - TARA_N000002171 (ERX1782363-ERR1712059) Canada's Michael Smith Genome Sciences Centre 3300018758 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 33.0339 -121.8782 165331659 385932 9 18 30 152 0.0 Metatranscriptome 2236876000 *Microbiome Permanent Draft Hydrothermal vent microbial communities from Guaymas and Carmen Basins, Gulf of California GB background transcript assembly Pennsylvania State University 2236876000 Metatranscriptome Analysis Velvet-Oases No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent 27.506 -111.347 7222325 32690 4713 983 16693 3467 0.0 Metatranscriptome 3300004582 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 39_LOW7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004582 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 33274565 82752 161 15 727 46 SRX2780055 Unrestricted 0.0 Metatranscriptome 3300018710 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_085 - TARA_N000001040 (ERX1809766-ERR1740136) Canada's Michael Smith Genome Sciences Centre 3300018710 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -62.0773 -49.4534 149130437 275664 4 4 7 37 0.0 Metatranscriptome 3300018649 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_084 - TARA_N000001440 (ERX1782476-ERR1712161) Canada's Michael Smith Genome Sciences Centre 3300018649 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -60.4016 -60.4488 108728257 213679 52 8 168 182 0.0 Metatranscriptome 3300059657 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 156R_AW_T3_R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059657 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 46840681 109653 140 142 484 926 Unrestricted 62.28 Metatranscriptome 3300030546 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cnb11 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030546 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 414532296 907111 172 260 2724 1130 SRX4547084 Unrestricted 0.0 Metatranscriptome 3300019282 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071407BT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019282 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 490541393 1079893 306 731 5609 7367 SRX3921444 Unrestricted 0.0 Metatranscriptome 3300024337 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 RNA GHGlow gp2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024337 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -40.3794 175.6106 1046500183 2073794 21 74 1053 765 SRX4497226, SRX7509749 Unrestricted 0.0 Metatranscriptome 3300022161 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 3-17 MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022161 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9301 -83.5517 89635892 182128 609 2271 15626 13520 SRX4037130 Unrestricted 0.0 Metatranscriptome 3300003716 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003716 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 13397653 27953 165 265 410 726 SRX2568629 Unrestricted 0.0 Metatranscriptome 3300052787 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_95 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052787 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 43438375 114933 53 67 401 372 Unrestricted 87.71 Metatranscriptome 3300049096 *Microbiome Permanent Draft Soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA Metatranscriptome of soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA - 5016_C_N300_69 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049096 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 42.013 -93.743 58475732 136186 67 113 758 702 Unrestricted 84.52 Metatranscriptome 3300006372 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_>0.8_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006372 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 91899957 319880 12638 9906 30306 26907 SRX3195868 Unrestricted 0.0 Metatranscriptome 3300046237 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_5_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046237 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 46416643 81923 1 0 21 0 Restricted 244.15 Metatranscriptome 3300010125 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_16_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010125 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 78525924 186747 74 545 5465 5519 Unrestricted 0.0 Metatranscriptome 3300008694 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-31 University of Hawaii 3300008694 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 450215 727 7 1 87 19 0.0 Metatranscriptome 3300028851 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Lys2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028851 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 61609388 117513 5 13 132 64 SRX5356144 Unrestricted 103.78 Metatranscriptome 3300030587 *Microbiome Permanent Draft Metatranscriptome of decayed wood fungal communities from Pinus contorta in National Forests from Montana, United States Metatranscriptome of plant litter fungal communities from Pinus contorta in Tenderfoot Creek Experimental Forest, Montana, United States - TCEF3-LITTER (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030587 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes dcullen@wisc.edu Daniel Cullen No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 46.9239 -110.8719 258154153 571944 167 17 112 80 SRX4804621 Unrestricted 0.0 Metatranscriptome 3300029638 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_1_27_80m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029638 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 107744556 214696 223 23 3587 211 SRX5337972 Unrestricted 46.07 Metatranscriptome 3300029270 *Microbiome Permanent Draft Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Soil microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B3.ctcc.R1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300029270 Metatranscriptome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes colemanderr@gmail.com Devin Coleman-Derr No Environmental Terrestrial Unclassified Soil Agricultural land Field Soil 36.339058 -120.12031 7560502 13828 533 686 2863 1820 0.0 Metatranscriptome 3300004553 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 104_HOW12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004553 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 51945840 122364 128 5 577 10 SRX2725654 Unrestricted 0.0 Metatranscriptome 3300008613 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-4 University of Hawaii 3300008613 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 2865143 4723 7 0 373 52 0.0 Metatranscriptome 3300046301 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_6_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046301 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 54150924 96001 1 0 27 0 Restricted 117.92 Metatranscriptome 3300004488 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004488 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 25204235 90300 2961 1017 10090 2200 Unrestricted 0.0 Metatranscriptome 3300052746 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_19 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052746 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 138772515 372501 213 192 1608 1116 Unrestricted 85.95 Metatranscriptome 3300018911 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_085 - TARA_N000001042 (ERX1809744-ERR1740134) Canada's Michael Smith Genome Sciences Centre 3300018911 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -62.1943 -49.2502 333316636 563079 10 9 20 99 0.0 Metatranscriptome 3300024858 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Colum_RepA_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024858 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 187157326 372863 42 223 522 1423 SRX4547780 Unrestricted 25.67 Metatranscriptome 3300031172 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_D6_32mM_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031172 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 35716804 50022 2 0 1 5 SRX5783612 Unrestricted 48.19 Metatranscriptome 3300055305 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP6.2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055305 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 102305147 220754 11 26 121 154 Unrestricted 86.28 Metatranscriptome 3300019253 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101410AT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019253 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 258083741 562865 187 1146 2801 6960 SRX3920935 Unrestricted 0.0 Metatranscriptome 3300021309 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.266 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021309 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.302 -123.036 119042129 299501 258 686 4816 5554 SRX4016025 Unrestricted 0.0 Metatranscriptome 3300003261 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment ColumnT-1K3-0 454 Life Sciences 3300003261 Metatranscriptome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.342219 40.479289 6-8 0 0 0 0 0 0 0.0 Metatranscriptome 3300020087 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 250-2.7um, replicate b, metaT Georgia Genomics Facility 3300020087 Metatranscriptome Analysis Trinity 2.06 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 23375280 74064 8822 4031 19325 12396 0.0 Metatranscriptome 3300008703 *Microbiome Permanent Draft Microbial communities of saline water collected from the North Sea in Germany Microbial communities of saline water collected from the North Sea in Germany - HE327_4 Goettingen Genomics Laboratory 3300008703 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified North sea 3140084 12288 210 243 1114 1743 0.0 Metatranscriptome 3300035385 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Metatranscriptome of Boechera depauperate grown with Bradyrhizobium sp. W and Methylocaldum sp. 0917 mixed culture communities from SDSU, California, USA - Exp#4 BR3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035385 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Host-associated Plants Unclassified Phyllosphere Unclassified plant growth chamber 32.7717 -117.0735 31489041 48434 4 0 8 0 SRX8295108 Unrestricted 432.16 Metatranscriptome 3300036125 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of sediment microbial communities from Prado wetlands, California, USA - CSM_Prado_Oct18_AM2_2.5z2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036125 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 39488935 77755 139 302 1649 1261 SRX8771517 Unrestricted 46.41 Metatranscriptome 3300005207 *Microbiome Permanent Draft Cyanobacterial communities from the Joint Genome Institute, California, USA Cyanobacterial communities from the Joint Genome Institute, California, USA - FECB-27 Dark/N+ metaT (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300005207 Metatranscriptome Analysis megahit v. 0.2.0 No Yes mhess@lbl.gov, mhess@ucdavis.edu Matthias Hess No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Cyanobacterial 37.9313884 -122.0239394 24483646 49835 32 5 108 15 Unrestricted 0.0 Metatranscriptome 3300019186 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Soil microbial communities from Bohemian Forest, Czech Republic - CSE3 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019186 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 49.0431 13.617 21510126 48946 12 122 544 851 SRX3937185 Unrestricted 0.0 Metatranscriptome 3300004631 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004631 Metatranscriptome Analysis megahit v. 0.2.0 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.531427 -72.189946 804488241 2450255 15105 4523 39636 11708 SRX2014022 Unrestricted 0.0 Metatranscriptome 3300047609 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_7_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047609 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 30221486 55124 2 0 22 0 Restricted 456.43 Metatranscriptome 3300004530 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 40_LOW7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004530 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 25205545 59203 148 23 618 54 SRX2780053 Unrestricted 0.0 Metatranscriptome 3300010894 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS5_55_TP2_12H Marine Biological Laboratory 3300010894 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933 -130.014 602333 1731 107 5 76 6 0.0 Metatranscriptome 3300049104 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 19 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049104 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 42.2817 -81.6717 20634383 41642 10 5 37 24 Restricted 38.66 Metatranscriptome 3300011292 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S15 250m_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011292 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 44700935 105909 18 40 1739 1492 SRX3787164 Unrestricted 0.0 Metatranscriptome 3300018755 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_068 - TARA_N000000720 (ERX1789582-ERR1719407) Canada's Michael Smith Genome Sciences Centre 3300018755 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -31.027 4.6802 155120082 384047 11 9 16 157 0.0 Metatranscriptome 3300019230 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Metatranscriptome of peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin01_30_metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019230 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 170965550 404717 61 68 6374 674 SRX3886984 Unrestricted 0.0 Metatranscriptome 3300022369 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Washington, United States - R1119 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022369 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 46.298 -124.183 63867231 138277 190 359 552 1801 SRX4015576 Unrestricted 0.0 Metatranscriptome 3300050378 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T3_3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050378 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 62894440 91650 9 2 93 17 Unrestricted 295.1 Metatranscriptome 3300055308 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP7.3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055308 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 540193358 1055097 19 22 135 108 Unrestricted 60.27 Metatranscriptome 3300022712 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022712 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 187945781 442639 427 581 8996 4217 SRX4402932 Unrestricted 0.0 Metatranscriptome 3300018600 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_064 - TARA_N000000535 (ERX1782170-ERR1711950) Canada's Michael Smith Genome Sciences Centre 3300018600 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -29.4964 37.9974 48738592 121286 10 21 86 421 0.0 Metatranscriptome 3300037625 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_M1_C1_D5_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037625 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 46681839 96695 278 255 3181 773 SRX9383571 Unrestricted 271.24 Metatranscriptome 3300018501 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_026 - TARA_S400007202 (ERX1782147-ERR1712052) Canada's Michael Smith Genome Sciences Centre 3300018501 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 38.4735 20.1718 10800371 25042 0 6 5 49 0.0 Metatranscriptome 3300032707 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red4_22May_deep (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032707 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 1126305452 2018234 26 14 48 213 SRX6410113 Unrestricted 18.81 Metatranscriptome 3300005503 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0600 MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005503 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 78987400 180892 1702 74 6181 192 SRX2521838, SRX2521839 Unrestricted 0.0 Metatranscriptome 3300046651 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_1_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046651 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 29957472 42745 1 0 15 1 Restricted 191.29 Metatranscriptome 3300046109 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-215 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046109 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4604 -64.2162 155826109 352842 518 31 1031 537 Unrestricted 19.63 Metatranscriptome 3300018977 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_111 - TARA_N000001816 (ERX1782322-ERR1711977) Canada's Michael Smith Genome Sciences Centre 3300018977 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -16.9587 -100.6751 498321698 1145171 160 55 670 733 0.0 Metatranscriptome 3300057187 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Vasterbotten County, Sweden - Sphagnum lindbergii 4OTC_LI_DE (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300057187 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.183 19.5578 149816111 310430 248 111 548 519 Unrestricted 45.74 Metatranscriptome 3300052883 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 29-S43Day63 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052883 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 130333707 273073 28 2 88 16 Unrestricted 64.58 Metatranscriptome 3300046550 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_1_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046550 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 56167316 86084 1 0 15 0 Restricted 138.98 Metatranscriptome 3300004564 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 8_HOW4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004564 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 12911536 34473 1955 179 3747 318 SRX2779749 Unrestricted 0.0 Metatranscriptome 3300041565 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_46 MetaT AgResearch, New Zealand, Mosgeil 3300041565 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 16981478 39498 209 78 1444 114 0.0 Metatranscriptome 3300010128 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_24_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010128 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 82788339 193322 113 705 12483 5507 Unrestricted 0.0 Metatranscriptome 3300019264 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019264 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 4.0627 -73.195 279652140 677896 1081 1007 128571 4353 SRX3939606 Unrestricted 0.0 Metatranscriptome 3300009208 *Microbiome Permanent Draft Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample 1-1 University of Duisburg-Essen 3300009208 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Pond Freshwater Unclassified Eutrophic pond 51.46 7.0 150333758 501517 39 58 857 405 SRX505228 0.0 Metatranscriptome 3300019147 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_132 - TARA_N000002400 (ERX1782434-ERR1711973) Canada's Michael Smith Genome Sciences Centre 3300019147 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 31.5024 -159.0393 310643188 594708 16 92 39 336 0.0 Metatranscriptome 3300049532 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_B_2_control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049532 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 143813811 342059 260 146 1342 1103 Unrestricted 79.72 Metatranscriptome 3300031863 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen6, Rep 1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031863 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 5818173 8639 4 0 10 1 SRX5359913 Unrestricted 53.84 Metatranscriptome 3300017306 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Baffin Bay in ProV 50 medium with seawater and antibiotics, 6 C, 32 psu salinity and 184 ?mol photons light - unclassified eukaryote CCMP 2293 (MMETSP0986) National Center for Genome Resources 3300017306 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 78.5922 -74.4922 40073030 56677 3 9 3 10 0.0 Metatranscriptome 3300004485 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 13 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004485 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 17388727 61252 1177 658 4540 1387 Unrestricted 0.0 Metatranscriptome 3300041484 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover leaf microbial community from Lincoln, Canterbury, New Zealand - WCL18_8 MetaT AgResearch, New Zealand, Mosgeil 3300041484 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 12873584 21133 108 85 310 186 0.0 Metatranscriptome 3300024855 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepC_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024855 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 203842443 429969 55 201 597 1318 SRX4547767 Unrestricted 18.04 Metatranscriptome 3300032953 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_05JUN2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032953 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.372 29382930 49703 37 25 92 101 SRX7519525 Unrestricted 39.05 Metatranscriptome 3300017102 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Arabian Sea in Prov 50 medium, 20 C, 32 psu salinity and 497 ?mol photons light - Mallomonas sp. CCMP3275 (MMETSP1167) National Center for Genome Resources 3300017102 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 34.0 135.1 26426005 31911 4 1 2 1 0.0 Metatranscriptome 3300017595 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine sediment eukaryotic communities from Great South Bay, New York in ATCC medium 790BY, 23 C, 25 psu salinity and 174 ?mol photons light - Aplanochytrium stocchinoi GSBS06 (MMETSP1346) (SRX549056-SRR1294442) National Center for Genome Resources 3300017595 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Sediment marine sediment 40.7 -73.1 6272248 9521 0 1 0 1 0.0 Metatranscriptome 3300046201 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_6_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046201 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 52672936 88119 1 0 23 0 Restricted 95.02 Metatranscriptome 3300024533 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepC_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024533 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 192552286 408980 60 124 791 1114 SRX4796913 Unrestricted 23.45 Metatranscriptome 3300003256 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment ColumnT-9K5-60 454 Life Sciences 3300003256 Metatranscriptome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.342219 40.479289 6-8 0 0 0 0 0 0 0.0 Metatranscriptome 3300008775 *Microbiome Permanent Draft Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico - 85m_0.2-1.6micron Georgia Institute of Technology 3300008775 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hypoxic zone Marine Unclassified Ocean water 18.9 -104.5 2201144 4373 10 1 780 90 SRX854078 0.0 Metatranscriptome 3300016799 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine algae-associated eukaryotic communities from Pacific Ocean in B1 amended seawater, 25 C, 33.5 psu salinity and 217 ?mol photons light - Thraustochytrium sp. LLF1b (MMETSP0199_2) National Center for Genome Resources 3300016799 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Algae Unclassified Unclassified Unclassified marine algae-associated 32.86667 -117.25 19301285 20234 1 7 1 15 0.0 Metatranscriptome 3300036530 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp03_R69 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036530 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 194527666 393709 255 74 700 954 SRX8840251 Unrestricted 45.68 Metatranscriptome 3300006685 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP1371 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006685 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -39.24 135.14 40785719 128373 991 1535 2989 3372 SRX3299449 Unrestricted 0.0 Metatranscriptome 3300036143 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Omics03_030518 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036143 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 147779847 325377 459 70 1068 1412 SRX8834099 Unrestricted 39.79 Metatranscriptome 3300009511 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, surface; RNA IDBA-UD Marine Biological Laboratory 3300009511 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes jhuber@whoi.edu Julie Huber No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 7.4 48857985 113127 1068 2449 3630 3659 0.0 Metatranscriptome 3300009749 *Microbiome Permanent Draft Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling - T3-HHNO3 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009749 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes milachis@u.washington.edu Ludmila Chistoserdova No Engineered Modeled Plant nodule Simulated communities (microbial mixture) Unclassified Methane-oxidizing 47.6193 -122.2449 64351584 158705 1 0 436 3 SRX2525430 Unrestricted 0.0 Metatranscriptome 3300008831 *Microbiome Permanent Draft Microbial communities of mouse gut induced with colitis from Vienna, Austria Microbial communities of mouse gut induced with colitis from Vienna, Austria - 9966_ATCGT University of Vienna 3300008831 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Stomach Digestive system Forestomach Foregut of mice 28720507 98151 238 3 1976 30 SRX326433 0.0 Metatranscriptome 3300036485 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metataranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0606S20re (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036485 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8959 -97.0388 177438927 365089 138 584 2506 1808 SRX8669559 Unrestricted 55.17 Metatranscriptome 3300041898 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_60 MetaT_extra_run AgResearch, New Zealand, Mosgeil 3300041898 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 8352037 19543 350 99 1937 145 0.0 Metatranscriptome 3300008957 *Microbiome Permanent Draft Freshwater microbial communities from Lake Lanier in Georgia, USA Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT2 Georgia Institute of Technology 3300008957 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Lake Lanier in Georgia, USA 85072055 284219 759 254 6496 1907 0.0 Metatranscriptome 3300026946 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0420-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026946 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 110365975 180795 60 271 16 86 SRX5250834 Unrestricted 104.74 Metatranscriptome 3300011319 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S9 250_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011319 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 108961807 237212 106 63 6796 3856 SRX3196632 Unrestricted 0.0 Metatranscriptome 3300030712 *Microbiome Permanent Draft Soil microbial communities from Risofladan, Vaasa, Finland Metatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - OX-3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030712 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes eva.hogfors-ronnholm@novia.fi Eva Hogfors-Ronnholm Yes Environmental Terrestrial Coastal area Soil Acid sulfate soil soil 63.0472 21.7116 63998982 138274 223 160 1268 717 SRX5356290 Unrestricted 47.35 Metatranscriptome 3300035288 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Antarctic Ocean - DFB2_03 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035288 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified Seawater -46.5954 142.0314 236627099 472370 1004 61 2042 1564 SRX8221133 Unrestricted 15.5 Metatranscriptome 3300052450 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 117-S78Day7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052450 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 89734046 173594 36 2 130 16 Unrestricted 126.88 Metatranscriptome 3300022156 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022156 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9263 -83.4268 110992840 226049 590 1864 17780 12860 SRX4037131 Unrestricted 0.0 Metatranscriptome 3300050682 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae culture inoculated with mixed bacterial community from LLNL, Livermore, California, USA - f4_d2_F_S08 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050682 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 15383460 28400 0 0 3 0 Restricted 29.75 Metatranscriptome 3300019024 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_152 - TARA_N000002797 (ERX1789427-ERR1719237) Canada's Michael Smith Genome Sciences Centre 3300019024 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 43.7056 -16.8794 595436208 1545767 37 77 177 608 0.0 Metatranscriptome 3300010257 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1800_T MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010257 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 136501616 362816 44 2 486 11 SRX2521306, SRX2521305 Unrestricted 0.0 Metatranscriptome 3300037643 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_M1_C3_D4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037643 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 39263223 76752 545 790 4977 2318 SRX9384030 Unrestricted 243.32 Metatranscriptome 3300007185 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_T0_4L (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007185 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 65299778 203710 18962 9768 52861 26831 SRX2522139 Unrestricted 0.0 Metatranscriptome 3300026466 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 70R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026466 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 246003104 416981 117 23 169 454 SRX4796131 Unrestricted 23.61 Metatranscriptome 3300061894 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 30_sorghum_1_T0 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061894 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 162099793 426413 217 202 1507 1410 Unrestricted 76.99 Metatranscriptome 3300002686 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_135m_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002686 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 27130044 69866 124 66 700 969 Unrestricted 0.0 Metatranscriptome 3300030892 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T23 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030892 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 48191590 91925 77 36 112 249 SRX5352353 Unrestricted 19.0 Metatranscriptome 3300037077 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - No_Particle_Incubation_B_031718 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037077 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 420686540 883703 688 54 1232 857 SRX8842535 Unrestricted 25.41 Metatranscriptome 3300009756 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from Louisiana Shelf, Gulf of Mexico - GoM_2015_C6C_202_18m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009756 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 28.8679 -90.4764 121577757 230859 252 315 5239 5949 Unrestricted 0.0 Metatranscriptome 3300032447 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day12_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032447 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 38045121 63091 7 0 16 4 SRX6858019 Unrestricted 321.77 Metatranscriptome 3300018534 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_136 - TARA_N000002965 (ERX1789412-ERR1719179) Canada's Michael Smith Genome Sciences Centre 3300018534 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 17.0552 -118.9008 21426986 51933 0 8 1 86 0.0 Metatranscriptome 3300023664 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023664 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 49.043 13.6183 21741839 33353 14 18 124 144 SRX5243249, SRX4454981 Unrestricted 0.0 Metatranscriptome 3300011031 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 24 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011031 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 18640932 45953 185 315 18777 1555 Unrestricted 0.0 Metatranscriptome 3300010421 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS5_30_TP1_12L Marine Biological Laboratory 3300010421 Metatranscriptome Analysis CLC genomics wb7 released per JGI data release policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933 -130.014 1482593 3659 77 8 268 23 0.0 Metatranscriptome 3300047569 *Microbiome Permanent Draft Soil microbial and eukaryotic communities from grasslands in the Rocky Mountains, Colorado, United States Metatranscriptome of soil eukaryotic communities from grasslands in the Rocky Mountains, Colorado, United States - ER-Low-Low-5-5 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047569 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mimann@unm.edu Michael Mann No Environmental Terrestrial Unclassified Soil Grasslands Soil 38.9664 -106.9904 288857821 567549 10 31 450 199 Unrestricted 35.97 Metatranscriptome 3300007329 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S5 c16 Surf_B metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007329 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 162697945 503130 2811 2338 7542 8243 SRX3196605 Unrestricted 0.0 Metatranscriptome 3300009316 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from the North Atlantic ocean - ACM15 University of Georgia 3300009316 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 7736351 23957 5 37 78 102 0.0 Metatranscriptome 3300030923 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300030923 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate/submediterranean forest 42.0 1.0 423751015 989409 363 156 8485 1923 SRX2998270 Unrestricted 0.0 Metatranscriptome 3300003566 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_07_M0_10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003566 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 34703394 88007 321 44 837 897 SRX2518458 Unrestricted 0.0 Metatranscriptome 3300008443 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy - t20.CO.B.RNAseq.exp2 University of Naples 3300008443 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Cheese 3316345 6321 9 0 51 10 0.0 Metatranscriptome 3300031002 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031002 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ake.olson@slu.se; francis.martin@inrae.fr Ake Olson; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 390294326 915292 235 132 585 357 SRX3344936 Unrestricted 0.0 Metatranscriptome 3300017250 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in HESNW medium w/o silica, at 18 C, 30 psu salinity and 276 ?mol photons light - Togula jolla CCCM 725 (MMETSP0224) National Center for Genome Resources 3300017250 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 51398478 65182 1 9 2 12 0.0 Metatranscriptome 3300022465 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, Michigan, USA - G5R1_MAIN_12JUL2016_LR1 MT pilot (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300022465 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes shadeash@msu.edu Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified Phyllosphere 42.39 -85.37 30920988 51573 17 14 49 144 SRX5781930, SRX5781929 Unrestricted 0.0 Metatranscriptome 3300018595 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from upper and lower halo cline of Thetis Basin, Eastern Mediterranean Sea Metatranscriptome of marine microbial communities from lower halo cline of Thetis Basin, Eastern Mediterranean Sea - 13_2 Woods Hole Oceanographic Institution 3300018595 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 34.4 22.08 40502379 120842 83 5 331 24 0.0 Metatranscriptome 3300006579 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006579 Metatranscriptome Analysis megahit v. 0.2.0 No Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil 45.54 -73.72 682193453 2433473 152 135 352 395 SRX2522007 Unrestricted 0.0 Metatranscriptome 3300017218 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no Na2SiO3, 25 C, 34 psu salinity and 712 ?mol photons light - Symbiodinium sp. CCMP 2430 (MMETSP1116) National Center for Genome Resources 3300017218 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -23.5 152.0 39004242 59305 17 3 45 6 0.0 Metatranscriptome 3300047410 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 819568f8-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047410 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 106895384 269409 187 176 1058 1079 Unrestricted 106.26 Metatranscriptome 3300016819 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from English Channel in L1 medium with seawater, 14 C, 33 psu salinity and 585 ?mol photons light - Pycnococcus provasolii RCC 251 (MMETSP1472) National Center for Genome Resources 3300016819 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 48.716667 -3.983333 7247506 11625 15 10 23 13 0.0 Metatranscriptome 3300037885 *Microbiome Permanent Draft Marine planktonic microbial communities from Bay of Bengal, Indian Ocean Metatranscriptome of marine planktonic microbial communities from Bay of Bengal, Indian Ocean - 3J (SRX5580370-SRR8790605) Nanyang Technological University 3300037885 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. released by JGI data releasing policy Yes Yes flauro@ntu.edu.sg Federico Lauro No Environmental Aquatic Unclassified Marine Unclassified Marine planktonic 2.94 86.36 118897254 554356 1342 178 4066 2862 0.0 Metatranscriptome 3300002647 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF118 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002647 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 3384471 9036 41 290 315 1263 SRX2014389 Unrestricted 0.0 Metatranscriptome 3300018560 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS678_3p0 J. Craig Venter Institute (JCVI) 3300018560 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 58.581234 18.232801 15916975 49416 40 72 1776 954 0.0 Metatranscriptome 3300018661 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_011 - TARA_X000001286 (ERX1782311-ERR1712063) Canada's Michael Smith Genome Sciences Centre 3300018661 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 41.6686 2.7996 106843099 235238 102 27 257 382 0.0 Metatranscriptome 3300012523 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012523 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 37.0306 -76.0464 279491495 606175 422 788 2218 11659 SRX3007440 Unrestricted 0.0 Metatranscriptome 3300055216 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP1.1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055216 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 294064639 583187 28 45 248 305 Unrestricted 65.36 Metatranscriptome 3300010876 *Microbiome Permanent Draft Forest soil eukaryotic communities from Alaska, USA, for a soil warming experiment in a boreal forest Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010876 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes treseder@uci.edu Kathleen Treseder No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Boreal forest soil 63.883 -145.733 711919012 1648586 139 196 8754 2485 SRX3007313 Unrestricted 0.0 Metatranscriptome 3300061835 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 81_controlsoil_1_T21 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061835 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 41213249 96000 62 56 553 446 Unrestricted 267.58 Metatranscriptome 3300049131 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I22_B_5_control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049131 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 39162059 96303 101 52 375 367 Unrestricted 120.17 Metatranscriptome 3300026442 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0936-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026442 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 177660502 308794 89 22 22 70 SRX4796411 Unrestricted 51.11 Metatranscriptome 3300004604 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 31 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004604 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 95722132 321976 4512 1751 17687 3998 Unrestricted 0.0 Metatranscriptome 3300052784 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_91B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052784 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Bulk soil Soil 38.992973 -123.067448 33256957 88891 82 126 487 644 Unrestricted 140.85 Metatranscriptome 3300017600 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in ESM medium with SW802, 23 C, 35 psu salinity and 437 ?mol photons light - Bicosoecida sp. CB-2014 ms1 (MMETSP0115) (SRX548995-SRR1294381) National Center for Genome Resources 3300017600 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Beach/Shore marine 46.5105 -63.4856 8417962 12049 16 1 28 1 0.0 Metatranscriptome 3300046295 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_5_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046295 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 71285502 120869 1 0 30 1 Restricted 260.79 Metatranscriptome 3300059654 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 148R_CW_T3_R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059654 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 130413252 322621 221 226 1064 1226 Unrestricted 57.73 Metatranscriptome 3300003300 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_1 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003300 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes mkfstone@berkeley.edu, nuccio1@llnl.gov; mkfstone@berkeley.edu Mary Firestone, Erin Nuccio; Mary Firestone No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.97364 -123.117453 29681475 82629 314 374 2126 2289 SRX2557984 Unrestricted 0.0 Metatranscriptome 3300016948 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine sediment eukaryotic communities from Great South Bay, New York in artificial seawater with 0.125% Artemia detritus and 0.8% agar, 23 C, 25 psu salinity and 178 ?mol photons light - Aplanochytrium stocchinoi GSBS06 (MMETSP1348) National Center for Genome Resources 3300016948 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Sediment marine sediment 40.7 -73.1 21060744 23222 6 8 13 9 0.0 Metatranscriptome 3300052392 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_203B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052392 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Bulk soil Soil 38.992973 -123.067448 132625864 340857 161 39 294 311 Unrestricted 92.41 Metatranscriptome 3300008041 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Puerto Morelos, Mexico - Orbicella C C metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300008041 Metatranscriptome Analysis megahit v. 0.2.0 No Yes momedinamunoz@gmail.com Monica _ Medina, Medina Medina No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral host 20.9047 -86.8367 374585778 585147 118 446 410 1195 SRX3362323 Unrestricted 0.0 Metatranscriptome 3300006404 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006404 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 401265812 1163053 3518 8061 9511 21004 SRX3196466 Unrestricted 0.0 Metatranscriptome 3300046260 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_2_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046260 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 58687093 102095 3 24 115 92 Restricted 260.88 Metatranscriptome 3300017315 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in K/2 medium, 17 C, 35 psu salinity and 672 ?mol photons light - Scyphosphaera apsteinii RCC 1455 (MMETSP1333) National Center for Genome Resources 3300017315 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 41.39 2.48 40252843 58772 21 1 37 1 0.0 Metatranscriptome 3300017333 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Gulf of Mexico in f/2 medium with artificial seawater w/o silicate, 18 C, 28 psu salinity and 260 ?mol photons light - Lingulodinium polyedrum CCMP 1738 (MMETSP1034) National Center for Genome Resources 3300017333 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 27.8 -97.13 75333798 105888 17 1 29 1 0.0 Metatranscriptome 3300049625 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Metatranscriptome of beaver colon microbial communities from Maple Ridge, British Columbia, Canada - B1_PC2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049625 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Unclassified colon 49.2552 -122.5085 35259909 73863 2 3 117 27 Restricted 74.87 Metatranscriptome 3300008804 *Microbiome Permanent Draft Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample NP-3 University of Duisburg-Essen 3300008804 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Pond Freshwater Unclassified Eutrophic pond 51.46 7.0 66712235 232883 17 50 501 263 SRX505509 0.0 Metatranscriptome 3300003708 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Acidic geyser microbial communities from Echinus Geyser, Yellowstone National Park, Wyoming, USA - Echinus (ECH_B) (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003708 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Acidic geyser 44.376 -110.69 2817915 5349 50 0 84 0 SRX2577036 Unrestricted 0.0 Metatranscriptome 3300030584 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Dnb11 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030584 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 294080082 689613 116 135 1841 891 SRX4547314 Unrestricted 0.0 Metatranscriptome 3300008697 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-15 University of Hawaii 3300008697 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 166294 249 2 0 63 11 0.0 Metatranscriptome 3300010181 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1300_B MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010181 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 71570082 155371 1782 5 8287 17 SRX2521625, SRX2521624 Unrestricted 0.0 Metatranscriptome 3300046234 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_5_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046234 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 44596987 78195 2 0 25 3 Restricted 247.96 Metatranscriptome 3300008425 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities from curd before stretching milk in Italy - Curd.RNAseq.exp1 University of Naples 3300008425 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Fermented dairy products Dairy products Unclassified Curd 24654 104 16 1 73 3 SRX1117660 0.0 Metatranscriptome 3300030945 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 EcM (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030945 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7585 6.3578 517256473 1659093 8759 2345 20373 8434 SRX3346473 Unrestricted 0.0 Metatranscriptome 3300016879 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Indian Ocean in L1 medium with seawater, 20 C, 33 psu salinity and 550 ?mol photons light - unclassified eukaryote RCC 701 (MMETSP1453) National Center for Genome Resources 3300016879 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 12749222 17215 15 2 14 6 0.0 Metatranscriptome 3300008895 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of boa constrictors from Steinhart Aquarium in San Francisco, USA - CAS06_Heart University of California, San Francisco 3300008895 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Heart Circulatory system Unclassified Heart 3780346 11059 0 0 0 0 SRX170646 0.0 Metatranscriptome 3300019183 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019183 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 49.043 13.6183 20344560 46042 11 135 330 716 SRX3937285 Unrestricted 0.0 Metatranscriptome 3300008706 *Microbiome Permanent Draft Microbial communities of corn and soybean rhizosphere soil from Ohio, USA Microbial communities of soybean rhizosphere soil from Ohio, USA - Soybean_Control_2b Auburn University 3300008706 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Plants Rhizosphere Roots Soil Rhisosphere soil 6382350 25411 398 245 17018 1941 SRX1078295 0.0 Metatranscriptome 3300030820 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030820 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 37828922 69811 55 29 86 206 SRX5794686 Unrestricted 17.79 Metatranscriptome 3300032028 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic - CSA5 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300032028 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 49.0448 13.618 29159498 66946 188 110 2590 823 SRX4455290, SRX5243651 Unrestricted 0.0 Metatranscriptome 3300022528 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022528 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 236141868 567678 172 497 3402 3585 SRX4407740 Unrestricted 0.0 Metatranscriptome 3300008860 *Microbiome Permanent Draft Microbial communities from harbor seals stranded along the coast of California, USA Microbial communities from harbor seals stranded along the coast of California, USA - com1 Oregon State University 3300008860 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Brain Nervous system Unclassified Harbor seal brain 37.8592 -122.4853 301259747 611558 13 5 236 34 ERX1190721 0.0 Metatranscriptome 3300003330 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-1-R (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003330 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 157759216 323349 8 16 164 57 SRX2557342 Unrestricted 0.0 Metatranscriptome 3300017278 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, no silicate, 15 C, 29.4 psu salinity and 386 ?mol photons light - Heterocapsa triquetra CCMP 448 (MMETSP0448) National Center for Genome Resources 3300017278 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 41.54 -70.61 61162997 85803 0 2 4 2 0.0 Metatranscriptome 3300019021 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_085 - TARA_N000001034 (ERX1782268-ERR1711957) Canada's Michael Smith Genome Sciences Centre 3300019021 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -62.21 -49.2245 687979943 1657361 124 28 242 260 0.0 Metatranscriptome 3300057143 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of creek water microbial communities from Sandhills, Nebraska, United States - NSL_Bcreek_2020 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300057143 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Creek Freshwater Unclassified Freshwater 41.60026 -102.33403 194370883 484709 178 181 760 756 Unrestricted 58.73 Metatranscriptome 3300046204 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_1_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046204 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 31340505 54940 2 0 13 1 Restricted 268.66 Metatranscriptome 3300021885 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-19 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021885 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine -26.4417 9.9808 50284531 112108 76 75 140 243 SRX6381387 Unrestricted 0.0 Metatranscriptome 3300019152 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_150 - TARA_N000002717 Canada's Michael Smith Genome Sciences Centre 3300019152 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 35.8605 -37.178 493616557 1113504 15 122 64 935 0.0 Metatranscriptome 3300005506 *Microbiome Permanent Draft Soil microbial communities from four geographically distinct crusts in the Colorado Plateau and Sonoran desert Soil microbial communities from Colorado Plateau, USA - Soil Crust after dry out 3A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005506 Metatranscriptome Analysis megahit v. 0.2.0 No Yes elbrodie@lbl.gov, ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Soil crust Soil Unclassified Soil 38.42 -109.4099 451847186 1438501 365 490 1668 2297 SRX3314795 Unrestricted 0.0 Metatranscriptome 3300052886 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 39-S49Day63 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052886 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 163735491 338599 50 10 142 64 Unrestricted 89.36 Metatranscriptome 3300003738 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_80_12L Marine Biological Laboratory 3300003738 Metatranscriptome Analysis CLC Genomics WB7 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 939276 2645 35 0 66 0 0.0 Metatranscriptome 3300006940 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_H2B_02_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006940 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 255848808 680372 760 841 3910 2197 SRX2752329 Unrestricted 0.0 Metatranscriptome 3300008834 *Microbiome Permanent Draft Eukaryotic communities of water from Amazon river, Brazil and North Atlantic ocean Eukaryotic communities of water from the North Atlantic ocean - ACM26 University of Georgia 3300008834 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 354247690 1011934 3 6 10 9 0.0 Metatranscriptome 3300007608 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S19 Surf_B metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007608 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 109540040 333767 3901 2520 10014 9518 SRX3787272 Unrestricted 0.0 Metatranscriptome 3300017303 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of freshwater ice eukaryotic communities from Messo in MWC medium with 4.55 nmol/L selenium, 3 C, 0 psu salinity and 680 ?mol photons light - Scrippsiella hangoei SHHI-4 (MMETSP0367) National Center for Genome Resources 3300017303 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Ice Freshwater Unclassified freshwater ice 68.46306 78.22333 74014655 95539 0 3 0 1 0.0 Metatranscriptome 3300031866 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic - CSU5 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031866 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 49.0448 13.618 42901498 99985 90 145 1777 1114 SRX5243248, SRX4455243 Unrestricted 0.0 Metatranscriptome 3300037017 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Growout1_03 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037017 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 403182089 832958 759 48 1396 1163 SRX8819568 Unrestricted 22.3 Metatranscriptome 3300000393 *Microbiome Permanent Draft Hydrothermal vent microbial communities from Guaymas and Carmen Basins, Gulf of California GB background transcript assembly Pennsylvania State University 3300000393 Metatranscriptome Analysis Velvet-Oases released per JGI data release policy No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent 27.506 -111.347 24882164 62319 38 0 76 1 0.0 Metatranscriptome 3300035442 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Antarctic Ocean - DFB2_08 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035442 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified Seawater -46.5954 142.0314 458288580 945074 1021 83 1965 1617 SRX8226650 Unrestricted 17.94 Metatranscriptome 3300004561 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004561 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 66121539 220438 6242 1883 20498 4012 Unrestricted 0.0 Metatranscriptome 3300022820 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from Nasutitermes sp. nest - French Guiana - 36-11 mRNA University of Luxembourg 3300022820 Metatranscriptome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 5.06224 -53.047407 107198486 356117 0 0 4 1 0.0 Metatranscriptome 3300008568 *Microbiome Permanent Draft Microbial communities of thrombolites from Highborne Cay, Bahamas Microbial communities of thrombolites from Highborne Cay, Bahamas - Zone1_total_RNA University of Florida 3300008568 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Saline Non-marine Saline and Alkaline Microbial mats Microbial mats 24.72 -76.82 25947518 85352 765 517 17779 4551 SRX704264 0.0 Metatranscriptome 3300018504 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_132 - TARA_N000002418 (ERX1782261-ERR1712132) Canada's Michael Smith Genome Sciences Centre 3300018504 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 31.5168 -159.046 11983236 28272 28 15 153 322 0.0 Metatranscriptome 3300037687 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Metatranscriptome of lab enriched marine microbial communities from Marineland, Florida, USA - SWA_R1_TP1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037687 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6475 -82.3464 324490961 649818 340 119 686 460 SRX9142537 Unrestricted 54.01 Metatranscriptome 3300004695 *Microbiome Permanent Draft Wastewater sludge bioreactor microbial communities from Fort Collins, Colorado Wastewater sludge bioreactor microbial communities from Fort Collins, Colorado -1 Colorado State University 3300004695 Metatranscriptome Analysis Unknown released per JGI data release policy No Yes jallison@colostate.edu Joseph Allison No Engineered Bioreactor Unclassified Unclassified Unclassified Wastewater sludge bioreactor 40.5852602 -105.084423 0 0 0 0 0 0 0.0 Metatranscriptome 3300041481 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover leaf microbial community from Lincoln, Canterbury, New Zealand - WCL18_12 MetaT AgResearch, New Zealand, Mosgeil 3300041481 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 14507643 23808 73 77 235 156 0.0 Metatranscriptome 3300003253 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment ColumnT-6K6-90 454 Life Sciences 3300003253 Metatranscriptome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.342219 40.479289 6-8 0 0 0 0 0 0 0.0 Metatranscriptome 3300024536 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepC_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024536 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 241574488 508406 94 152 1315 1636 SRX4547694 Unrestricted 18.71 Metatranscriptome 3300019261 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041413BS (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019261 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 293042814 629578 50 84 439 2038 SRX4666071, SRX4666072 Unrestricted 0.0 Metatranscriptome 3300036146 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10CT5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036146 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 21825138 43182 501 1496 5475 5103 SRX8377977 Unrestricted 45.96 Metatranscriptome 3300030528 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO135-VCO084SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030528 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2469 -71.169 512877816 1123853 146 145 4336 2160 SRX4011288 Unrestricted 0.0 Metatranscriptome 3300029691 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_40m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029691 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 118970442 235190 210 59 2957 380 SRX5338153 Unrestricted 31.82 Metatranscriptome 3300010891 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS6_30_TP2_13H Marine Biological Laboratory 3300010891 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933 -129.982268 509926 1395 39 0 151 3 0.0 Metatranscriptome 3300049101 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 15 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049101 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 42.4305 -81.2062 22330012 48406 21 9 60 28 Restricted 65.97 Metatranscriptome 3300061805 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 26_hairyvetch_2_T21 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061805 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 23814922 55270 54 50 485 531 Unrestricted 218.66 Metatranscriptome 3300017375 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from McMurdo Sound in HESNW medium w/o silica, 4 C, 30 psu salinity and 283 ?mol photons light - Polarella glacialis CCMP 1383 (MMETSP0227) National Center for Genome Resources 3300017375 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 57730337 89047 3 5 6 17 0.0 Metatranscriptome 3300031032 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_S2_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031032 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -38.0 -45.0 366212380 1337878 487 581 933 1885 SRX3342164 Unrestricted 0.0 Metatranscriptome 3300003557 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA Grassland soil microbial communities from Hopland, California, USA - Sample H4_Bulk_48 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003557 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes pettridge2@llnl.gov, nuccio1@llnl.gov; pettridge2@llnl.gov Jennifer Pett-Ridge, Erin Nuccio; Jennifer Pett-Ridge No Environmental Terrestrial Grasslands Soil Bulk soil Avena fatua rhizosphere 38.972988 -123.116539 23425698 70668 161 189 1234 1562 SRX2564899 Unrestricted 0.0 Metatranscriptome 3300031205 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_D6_16mM_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031205 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 11724739 19347 0 0 1 2 SRX6408183 Unrestricted 66.66 Metatranscriptome 3300017099 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater and 14nM iron, 19 C, 35 psu salinity and 623 ?mol photons light - Thalassiosira weissflogii CCMP 1010 (MMETSP1418) National Center for Genome Resources 3300017099 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.0 -65.0 32294623 31925 2 1 2 1 0.0 Metatranscriptome 3300037646 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_N3_C1_D1_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037646 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 48893850 92549 263 1737 2675 5264 SRX9385010 Unrestricted 173.36 Metatranscriptome 3300008801 *Microbiome Permanent Draft Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample NO3-3 University of Duisburg-Essen 3300008801 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Pond Freshwater Unclassified Eutrophic pond 51.46 7.0 61143111 206504 38 69 638 383 SRX505502 0.0 Metatranscriptome 3300021239 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from nest from French Guiana - FG16_17_4 mRNA SA University of Luxembourg 3300021239 Metatranscriptome Analysis CLC Genomics Workbench Version 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 5.45416667 -53.30111111 64994189 229835 1 0 1 2 0.0 Metatranscriptome 3300032145 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CBN3_1000m_313 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032145 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 80.9595 -132.1842 326608502 677615 145 53 1008 1082 SRX6422226 Unrestricted 18.92 Metatranscriptome 3300012388 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_24_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012388 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 143486269 345883 112 711 5670 6170 Unrestricted 0.0 Metatranscriptome 3300032469 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032469 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Unclassified Phyllosphere Unclassified phyllosphere 42.39 -85.37 237622173 407857 62 66 111 414 SRX7077617 Unrestricted 84.05 Metatranscriptome 3300002683 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_165m_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002683 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 25318470 60629 48 24 381 416 SRX1878044 Unrestricted 0.0 Metatranscriptome 3300028730 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Asp2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028730 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 96431879 173771 10 0 122 2 SRX5356199 Unrestricted 59.0 Metatranscriptome 3300036500 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10WB15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036500 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 58280475 111530 530 1925 6098 6816 SRX8379131 Unrestricted 41.34 Metatranscriptome 3300020081 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300020081 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil corn rhizosphere 42.3948 -85.3738 918048346 2090282 685 3614 17021 35131 SRX4062910, SRX4062909 Unrestricted 0.0 Metatranscriptome 3300055235 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP11.1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055235 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 76218046 147486 8 11 69 96 Unrestricted 58.53 Metatranscriptome 3300036159 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5ST15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036159 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 29958092 61428 113 814 679 3224 SRX8379495 Unrestricted 169.43 Metatranscriptome 3300006399 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006399 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 316936382 777235 3676 12204 10404 26101 SRX3196354 Unrestricted 0.0 Metatranscriptome 3300009753 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from Louisiana Shelf, Gulf of Mexico - GoM_2015_C6C_190_18m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009753 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 28.8679 -90.4764 106190500 190948 178 372 2818 6154 Unrestricted 0.0 Metatranscriptome 3300030680 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under control temperature from Pennsylvania, USA - 24_T1F_2612KB8 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030680 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 96721750 119435 8 22 131 416 SRX4646390 Unrestricted 0.0 Metatranscriptome 3300030581 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO142-VCO031SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030581 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr; fmartin@nancy.inra.fr Francis M. Martin; Francis M. MARTIN No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2736 -71.1993 433267866 945593 109 139 3859 1437 SRX4011205 Unrestricted 0.0 Metatranscriptome 3300046231 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_5_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046231 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 58535692 95845 2 0 15 2 Restricted 145.43 Metatranscriptome 3300023306 *Microbiome Permanent Draft Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Soil microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B1.ctno.R1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300023306 Metatranscriptome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes colemanderr@gmail.com Devin Coleman-Derr No Environmental Terrestrial Unclassified Soil Agricultural land field soil 36.339058 -120.12031 22720376 45863 86 865 302 2487 0.0 Metatranscriptome 3300032452 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day7_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032452 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 20856585 37320 15 0 52 0 SRX6857447 Unrestricted 97.46 Metatranscriptome 3300046578 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-59 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046578 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.423 -64.1209 150421571 355891 1160 34 1732 713 Unrestricted 15.16 Metatranscriptome 3300010184 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0800_T MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010184 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 76125970 186409 30 1 306 14 SRX2521570, SRX2521571 Unrestricted 0.0 Metatranscriptome 3300046307 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_5_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046307 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 41629803 72875 1 1 22 1 Restricted 216.0 Metatranscriptome 3300036162 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8NT15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036162 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 66638990 131944 600 1975 2622 5979 SRX8379681 Unrestricted 58.52 Metatranscriptome 3300031960 *Microbiome Permanent Draft Freshwater RNA viral communities from high-CO2 subsurface aquifer at Crystal Geyser, Utah, USA Metatranscriptome of freshwater viral communities from high-CO2 subsurface aquifer at Crystal Geyser, Utah, USA - CG08 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031960 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes nckyrpides@lbl.gov Nikos Kyrpides No Environmental Aquatic Groundwater Deep subsurface Unclassified subsurface water 38.9383 -110.1342 137640041 247975 36 84 198 331 SRX8128253 Unrestricted 0.0 Metatranscriptome 3300018729 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_036 - TARA_N000000313 (ERX1789694-ERR1719374) Canada's Michael Smith Genome Sciences Centre 3300018729 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 20.8215 63.512 161682953 324511 1 31 9 174 0.0 Metatranscriptome 3300017132 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine bacterial communities from South Pacific Ocean in f/2 medium with natural seawater, no silicate, 21 C, 35 psu salinity and 418 ?mol photons light - Rhodopseudomonas sp. CCMP768 (MMETSP1091) National Center for Genome Resources 3300017132 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -39.0 -176.0 24522857 45618 1 8 4 8 0.0 Metatranscriptome 3300028338 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 15R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028338 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 205591239 331455 89 19 135 424 SRX5112347 Unrestricted 27.71 Metatranscriptome 3300012780 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Croche, Canada - C_130625_M_mt (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012780 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.8319 -72.5 254146859 536365 283 135 954 2354 SRX3015159 Unrestricted 0.0 Metatranscriptome 3300037748 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of photosynthetic mat microbial communities from Octopus Spring, YNP, Wyoming, United States - 20090728 2000 sample t5cd (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037748 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 128332946 294687 0 0 68 0 SRX9381213 Unrestricted 195.71 Metatranscriptome 3300059651 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 70R_SD_T2_R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059651 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 69696444 180686 118 141 568 907 Unrestricted 44.47 Metatranscriptome 3300009313 *Microbiome Permanent Draft Microbial communities of freshwater from Kranji Reservoir, Singapore Microbial communities of freshwater from Kranji Reservoir, Singapore - Krb3-6am Massachusetts Institute of Technology 3300009313 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater reservoir 1.4371666 103.7186571 7069005 23198 3 1 301 80 SRX472180 0.0 Metatranscriptome 3300008446 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy - t30.CR.B.RNAseq.exp2 University of Naples 3300008446 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Cheese 2786234 4102 1 0 19 2 0.0 Metatranscriptome 3300010910 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS6_30_TP1_13H Marine Biological Laboratory 3300010910 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 1700624 3663 172 1 337 6 0.0 Metatranscriptome 3300030926 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T30 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030926 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 34001588 64911 38 25 43 154 SRX5352675 Unrestricted 19.2 Metatranscriptome 3300003563 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA Grassland soil microbial communities from Hopland, California, USA - Sample H4_Bulk_46 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003563 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes pettridge2@llnl.gov, pettridge2@llnl.gov; nuccio1@llnl.gov Jennifer Pett-Ridge, Jennifer Pett-Ridge; Erin Nuccio No Environmental Terrestrial Grasslands Soil Bulk soil Avena fatua rhizosphere 38.972988 -123.116539 26914964 76798 194 105 468 1078 SRX2563670 Unrestricted 0.0 Metatranscriptome 3300037659 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_OW2_C1_D1_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037659 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 61055902 117081 458 2325 4022 5814 SRX9385756 Unrestricted 138.64 Metatranscriptome 3300052781 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 168_50_13 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052781 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 143895565 372889 456 326 2637 1842 Unrestricted 68.4 Metatranscriptome 3300009394 *Microbiome Permanent Draft Microbial communities of red sea marine sponge, Stylissa carteri from the coast of Thuwal, Saudi Arabia Microbial communities of red sea marine sponge, Stylissa carteri from the coast of Thuwal, Saudi Arabia - rep 3 University of Wuerzburg 3300009394 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Porifera Unclassified Unclassified Unclassified marine sponge 22.23 39.03 160207178 353091 75 32 2723 760 0.0 Metatranscriptome 3300017504 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Baltic Sea in MWC medium with 4.55 nmol/L selenium, 3 C, 0 psu salinity and 306 ?mol photons light - Scrippsiella Hangoei SHTV-5 (MMETSP0359) National Center for Genome Resources 3300017504 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 59.51 23.13 106320356 128888 1 13 1 32 0.0 Metatranscriptome 3300002652 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF133 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002652 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.53312 -72.189707 5476077 15385 23 376 293 1879 SRX2014426 Unrestricted 0.0 Metatranscriptome 3300029673 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Trp2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029673 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 58420548 111062 10 14 192 59 SRX5356190 Unrestricted 65.87 Metatranscriptome 3300008044 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Puerto Morelos, Mexico - Orbicella C A metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300008044 Metatranscriptome Analysis megahit v. 0.2.0 No Yes momedinamunoz@gmail.com Monica _ Medina, Medina Medina No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral host 20.9047 -86.8367 418149028 744800 339 681 1107 1915 SRX3362321 Unrestricted 0.0 Metatranscriptome 3300010873 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 3A (Eukaryote Community Metatranscriptome) (version 6) (version 6) DOE Joint Genome Institute (JGI) 3300010873 Metatranscriptome Analysis MEGAHIT v. 1.0.4b No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 566397676 1389973 6616 832 17352 1893 SRX2752796 Unrestricted 0.0 Metatranscriptome 3300006401 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006401 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 304435576 933190 1758 6022 4945 15744 SRX3196371 Unrestricted 0.0 Metatranscriptome 3300037662 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_OW2_C1_D1_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037662 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 64526755 123372 470 2352 5420 6751 SRX9385904 Unrestricted 144.42 Metatranscriptome 3300031761 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen6, Rep 2, Chloramphenicol (Eukaryote Community Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031761 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 16814650 17120 0 0 0 0 SRX6409917, SRX6409918 Unrestricted 0.0 Metatranscriptome 3300002669 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF128 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002669 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 9643418 26665 85 467 1006 2187 SRX2014417 Unrestricted 0.0 Metatranscriptome 3300004955 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 78 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004955 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 25794455 92642 1097 639 3825 1471 Unrestricted 0.0 Metatranscriptome 3300029837 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Asn1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029837 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 52323827 103775 10 10 288 43 SRX5356127 Unrestricted 77.45 Metatranscriptome 3300019200 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - R.1175 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019200 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.235 -123.91 65032598 140512 106 222 808 7562 SRX3915583 Unrestricted 0.0 Metatranscriptome 3300008355 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy - t0.CO.RNAseq.exp2 University of Naples 3300008355 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Cheese 495116 1409 63 0 189 28 0.0 Metatranscriptome 3300049134 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J25_B_7_control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049134 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 19112540 46042 103 69 354 397 Unrestricted 208.2 Metatranscriptome 3300019088 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_011 - TARA_X000001338 (ERX1782331-ERR1712049) Canada's Michael Smith Genome Sciences Centre 3300019088 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 41.6663 2.7994 49989525 107248 1 10 18 130 0.0 Metatranscriptome 3300017479 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from South Pacific Ocean in L1 medium, 22 C, 20 psu salinity and 668 ?mol photons light - Karlodinium veneficum CCMP 2283 (MMETSP1015) National Center for Genome Resources 3300017479 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal -32.2167 -80.7355 77344980 98460 7 7 3 6 0.0 Metatranscriptome 3300004500 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 46 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004500 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 37786961 132289 1913 1012 7064 2284 Unrestricted 0.0 Metatranscriptome 3300047639 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_99_Fire (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047639 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.2074 -81.3571 63866178 152392 56 171 1094 1027 Unrestricted 29.21 Metatranscriptome 3300004601 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 22 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004601 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 90717624 291677 4452 2054 16645 4333 Unrestricted 0.0 Metatranscriptome 3300008608 *Microbiome Permanent Draft Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France - CSM2012-MB-A-N Centre National de la Recherche Scientifique (CNRS) 3300008608 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Microbial mats Freshwater lake 5645580 14413 41 33 452 287 SRX528800 0.0 Metatranscriptome 3300011060 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 73 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011060 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 54413187 130589 131 257 7991 1445 Unrestricted 0.0 Metatranscriptome 3300038160 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_N3_C1_D6_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038160 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 14259570 24524 372 328 4904 946 SRX9390222 Unrestricted 150.15 Metatranscriptome 3300018664 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_124 - TARA_N000002043 (ERX1789700-ERR1719381) Canada's Michael Smith Genome Sciences Centre 3300018664 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -9.1508 -140.4969 104147165 240935 0 6 3 37 0.0 Metatranscriptome 3300017336 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from South Pacific Ocean in marine media K with soil extract, 1 C, 36 psu salinity and 391 ?mol photons light - Phaeocystis antarctica Caron Lab Isolate (MMETSP1100) National Center for Genome Resources 3300017336 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -77.625 -179.23 43802812 64739 4 4 8 9 0.0 Metatranscriptome 3300005499 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1500(2)_B MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005499 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 63670210 157268 1347 15 3705 49 SRX2521788, SRX2521789 Unrestricted 0.0 Metatranscriptome 3300010424 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS908_80_TP1_13L Marine Biological Laboratory 3300010424 Metatranscriptome Analysis CLC genomics wb7 released per JGI data release policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 1850998 4570 92 1 205 6 0.0 Metatranscriptome 3300049160 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_A_0_drought (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049160 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 83943083 200826 151 125 1036 829 Unrestricted 41.11 Metatranscriptome 3300046139 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-158 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046139 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4688 -64.2255 45227776 113125 379 25 716 248 Unrestricted 27.71 Metatranscriptome 3300018531 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_051 - TARA_N000000231 (ERX1789593-ERR1719306) Canada's Michael Smith Genome Sciences Centre 3300018531 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -21.5043 54.3563 7341893 22329 2 6 10 72 0.0 Metatranscriptome 3300018630 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_067 - TARA_N000000750 (ERX1789440-ERR1719452) Canada's Michael Smith Genome Sciences Centre 3300018630 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -32.2188 17.7054 100584713 172677 0 18 1 38 0.0 Metatranscriptome 3300023560 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023560 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 49.0431 13.617 34054502 47131 22 34 342 261 SRX4454740 Unrestricted 24.9 Metatranscriptome 3300026385 *Microbiome Permanent Draft Enriched cultures of PCE-dechlorinating microbial communities from Ithaca, New York, USA Metatranscriptome of enriched culture of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.36 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026385 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes rer26@cornell.edu Ruth Richardson No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified defined medium 42.4447 -76.485 50117343 82057 3 4 202 1 SRX4393185 Unrestricted 140.56 Metatranscriptome 3300054638 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_TH_036R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300054638 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0701 10.4326 254760792 654518 963 683 3460 3287 Unrestricted 56.99 Metatranscriptome 3300011034 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 30 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011034 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 21700594 51824 87 338 6432 1279 Unrestricted 0.0 Metatranscriptome 3300019085 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS670_3p0_dT J. Craig Venter Institute (JCVI) 3300019085 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 65.73045 22.445047 38619277 90673 1261 621 1856 1309 0.0 Metatranscriptome 3300028670 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_1_27_50m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028670 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 105377873 207227 292 60 3945 383 SRX5337974 Unrestricted 45.32 Metatranscriptome 3300008605 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.10.3V73.15dpc University of Colorado 3300008605 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 16739526 53124 60 3 484 8 0.0 Metatranscriptome 3300035612 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0819U02 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300035612 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.039 108920488 234376 258 679 4309 2299 SRX9140150, SRX9140149 Unrestricted 0.0 Metatranscriptome 3300059666 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_6 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059666 Metatranscriptome Analysis megahit v. 2021-11-04 03:08:02 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 127068102 291154 202 47 597 269 Unrestricted 0.0 Metatranscriptome 3300010251 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1600(2)_B MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010251 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 92233277 204262 746 7 4983 41 SRX2521780, SRX2521781 Unrestricted 0.0 Metatranscriptome 3300004958 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI047_120m_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004958 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 25514236 84281 461 275 1696 868 Unrestricted 0.0 Metatranscriptome 3300008310 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - PM96.FECAL.14dpc CCME-COLORADO 3300008310 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 9281056 36052 64 1 1020 8 0.0 Metatranscriptome 3300036424 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 10WT15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036424 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 104540858 198364 372 1861 1477 6971 SRX8379343 Unrestricted 41.76 Metatranscriptome 3300055313 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - m1.3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055313 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 327611383 669953 1 0 23 4 Unrestricted 56.01 Metatranscriptome 3300026526 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Metatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_05 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026526 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen 49.6935 -112.8418 656790371 1076286 4 23 104 107 SRX4804157, SRX7705828 Unrestricted 0.0 Metatranscriptome 3300052475 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 28-S43Day63 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052475 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 131851453 278942 23 5 115 36 Unrestricted 43.81 Metatranscriptome 3300047343 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_3_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047343 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 59433233 93917 2 0 23 0 Restricted 260.91 Metatranscriptome 3300018653 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_138 - TARA_N000003013 (ERX1789553-ERR1719190) Canada's Michael Smith Genome Sciences Centre 3300018653 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 6.3356 -103.0399 84262765 216059 0 17 12 181 0.0 Metatranscriptome 3300008358 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy - t10.CO.A.RNAseq.exp2 University of Naples 3300008358 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Cheese 112465 274 2 0 46 12 0.0 Metatranscriptome 3300019249 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019249 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 261132416 598982 310 668 28629 6135 SRX3940316 Unrestricted 0.0 Metatranscriptome 3300008837 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_2051 Massachusetts Institute of Technology 3300008837 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 2645320 8501 13 4 245 685 0.0 Metatranscriptome 3300042513 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_Cl14_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042513 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 48682950 65091 0 0 0 0 Unrestricted 176.03 Metatranscriptome 3300026388 *Microbiome Permanent Draft Enriched cultures of PCE-dechlorinating microbial communities from Ithaca, New York, USA Metatranscriptome of enriched culture of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.SFe4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026388 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes rer26@cornell.edu Ruth Richardson No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified defined medium 42.4447 -76.485 58354268 94255 10 3 215 6 SRX4393193 Unrestricted 172.32 Metatranscriptome 3300054635 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_CL_028R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300054635 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0557 10.44641 280448822 711755 833 606 3362 3182 Unrestricted 41.24 Metatranscriptome 3300039429 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metataranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0819U12re (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300039429 Metatranscriptome Analysis MEGAHIT v. 1.2.9 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.039 91234848 188434 363 672 11420 1892 SRX8670146 Unrestricted 58.84 Metatranscriptome 3300018682 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS680_0p1 J. Craig Venter Institute (JCVI) 3300018682 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 56.1664 16.378218 94385404 267918 0 12 137 315 0.0 Metatranscriptome 3300039281 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cnb6 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300039281 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 296493905 685911 289 88 886 598 SRX9404279 Unrestricted 16.29 Metatranscriptome 3300016772 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in ATCC medium 1525 with 0.02% FBS plus antibiotics, 20 C and 187 ?mol photons light - Sexangularia sp. CB-2014 (MMETSP0437) National Center for Genome Resources 3300016772 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.96053 -75.3281 17441667 14991 13 2 14 4 0.0 Metatranscriptome 3300041989 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Metatranscriptome of feshwater microbial communities from Arden, United Kingdom - blythe_2019_sw_WHONDRS-S19S_0092 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300041989 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 52.4198 -1.7043 102594957 229197 273 421 1153 1883 SRX14870794 Unrestricted 32.35 Metatranscriptome 3300009235 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from Amazon river, Brazil - RCM10 University of Georgia 3300009235 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic River Freshwater Unclassified River water 517074322 1608271 91 88 983 531 SRX860935 0.0 Metatranscriptome 3300011320 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S12 250_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011320 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 104528369 238846 58 65 8776 3231 SRX3196640 Unrestricted 0.0 Metatranscriptome 3300046207 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_2_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046207 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 71110756 117620 2 0 24 2 Restricted 94.23 Metatranscriptome 3300004549 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 61_LOW9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004549 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 40791592 95207 102 24 495 40 SRX2724285 Unrestricted 0.0 Metatranscriptome 3300016926 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in modified f/2 medium with seawater, 3 C, 33.6 psu salinity and 366 ?mol photons light - Thalassionema nitzschioides L26-B (MMETSP0156) National Center for Genome Resources 3300016926 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -47.86667 -15.8 31574668 31069 5 2 6 1 0.0 Metatranscriptome 3300019141 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_122 - TARA_N000001937 (ERX1789668-ERR1719463) Canada's Michael Smith Genome Sciences Centre 3300019141 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -8.9971 -139.1963 319190728 776375 10 39 75 347 0.0 Metatranscriptome 3300017236 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in 1/8 Erdschreiber medium with filtered sea water, at 22 C, 35 psu salinity and 247 ?mol photons light - Rosalina sp. (MMETSP0190_2) National Center for Genome Resources 3300017236 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 35869245 60968 4 6 7 17 0.0 Metatranscriptome 3300046575 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-49 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046575 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4354 -64.1145 107558830 252639 999 37 1559 630 Unrestricted 15.64 Metatranscriptome 3300052403 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 0_100_14 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052403 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 25399712 63946 525 544 3227 3254 Unrestricted 137.88 Metatranscriptome 3300053028 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Metatranscriptome of soil microbial communities from peatland in Alberta, Canada - SB-91-mossy 0-10 cm (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053028 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4732 -114.8724 43062264 103423 196 409 1668 1738 Restricted 109.14 Metatranscriptome 3300009338 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from the North Atlantic ocean - ACM29 University of Georgia 3300009338 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 40325986 112879 15 26 87 74 0.0 Metatranscriptome 3300037684 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Metataranscriptome of bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_015 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037684 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -19.6574 146.8351 390238525 812007 5 86 90 369 SRX9161805 Unrestricted 14.32 Metatranscriptome 3300018507 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_009 - TARA_X000000954 (ERX1782349-ERR1711932) Canada's Michael Smith Genome Sciences Centre 3300018507 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.1633 5.916 1383292 5052 0 0 2 0 0.0 Metatranscriptome 3300023656 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic - CSA5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023656 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 49.0448 13.618 7265740 15682 65 49 2069 542 SRX4455290, SRX5243651 Unrestricted 0.0 Metatranscriptome 3300017180 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in filtered seawater, at 15 C, 29.4 psu salinity and 625 ?mol photons light - Oxyrrhis marina (MMETSP0468) National Center for Genome Resources 3300017180 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 34923187 50022 18 5 24 6 0.0 Metatranscriptome 3300012385 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_4_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012385 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 137041198 328345 176 849 8622 8643 Unrestricted 0.0 Metatranscriptome 3300004796 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004796 Metatranscriptome Analysis megahit v. 0.2.0 No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 647630742 1799577 4600 1779 15028 9184 SRX2518378 Unrestricted 0.0 Metatranscriptome 3300008673 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-48 University of Hawaii 3300008673 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 1807349 3704 4 0 189 25 0.0 Metatranscriptome 3300030632 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO132-ANR004SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030632 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes fmartin1954@me.com Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2662 -71.2166 1022181660 2123352 136 177 3401 2338 SRX4010652 Unrestricted 0.0 Metatranscriptome 3300018971 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_143 - TARA_N000003148 Canada's Michael Smith Genome Sciences Centre 3300018971 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 29.8253 -79.6833 524810955 1108381 11 146 38 649 0.0 Metatranscriptome 3300036549 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen2, Rep 2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036549 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 73225508 108884 6 0 90 0 SRX8381890 Unrestricted 59.48 Metatranscriptome 3300028753 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Glu1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028753 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 47700245 92745 6 10 247 60 SRX5356129 Unrestricted 88.54 Metatranscriptome 2061766003 *Microbiome Permanent Draft Hydrothermal vent microbial communities from Guaymas and Carmen Basins, Gulf of California Hydrothermal vent microbial communities from Guaymas and Carmen Basins, Gulf of California, Sample 457 Pennsylvania State University 2061766003 Metatranscriptome Analysis MIRA 3 No Yes gdick@umich.edu Gregory Dick No Environmental Aquatic Hydrothermal vents Marine Unclassified hydrothermal vent 27.506 -111.347 136121595 322198 119 0 166 0 0.0 Metatranscriptome 3300043245 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Metatranscriptome of coal bed microbial communities from the Powder River Basin, Montana, United States - T1YRFGPRNAC (Metagenome Metatranscriptome) (FastSelect) (version 2) DOE Joint Genome Institute (JGI) 3300043245 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Aquatic Groundwater Deep subsurface Coalbed methane well water coal bed water 45.435 -106.392 102774076 208101 9 4 146 16 Unrestricted 0.0 Metatranscriptome 3300003554 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_04_M0_20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003554 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 24320946 62440 215 41 572 871 SRX2570282 Unrestricted 0.0 Metatranscriptome 3300031409 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_D6_4mM_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031409 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 30781557 44188 1 1 4 3 SRX6408064 Unrestricted 67.72 Metatranscriptome 3300009730 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from Louisiana Shelf, Gulf of Mexico - GoM_2015_C6C_177_2m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009730 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 28.8679 -90.4764 58178464 103637 123 1506 511 6953 Unrestricted 0.0 Metatranscriptome 3300012732 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES039 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012732 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 213446159 427541 98 102 391 3415 SRX3010465 Unrestricted 0.0 Metatranscriptome 3300028335 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 14R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028335 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 138825727 301383 203 25 253 490 SRX5112381 Unrestricted 18.14 Metatranscriptome 3300037745 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of photosynthetic mat microbial communities from Mushroom Spring, YNP, Wyoming, United States - 20090730 1007 sample R11cd (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037745 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 132958612 319067 0 0 80 0 SRX9378965 Unrestricted 168.54 Metatranscriptome 3300016680 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES103 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016680 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.041 -89.686 34553700 68405 41 142 3304 2841 SRX3780027 Unrestricted 0.0 Metatranscriptome 3300009857 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 4, 6m depth; RNA IDBA-UD Marine Biological Laboratory 3300009857 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 6.53 4753154 12497 450 135 2278 517 0.0 Metatranscriptome 3300018770 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_152 - TARA_N000002783 (ERX1789454-ERR1719490) Canada's Michael Smith Genome Sciences Centre 3300018770 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 43.7421 -16.9002 182768779 381174 2 8 5 68 0.0 Metatranscriptome 3300004637 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI047_150m_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004637 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 70477248 202825 2724 609 8236 1974 Unrestricted 0.0 Metatranscriptome 3300011279 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S19 NT30 metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011279 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 16889717 36963 21 78 352 785 SRX3787353 Unrestricted 0.0 Metatranscriptome 3300036242 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRI5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036242 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 59.9989 10.7903 29645154 51270 56 7 111 57 SRX8135102 Unrestricted 0.0 Metatranscriptome 3300036891 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0606S12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036891 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8959 -97.0388 589449736 1273147 789 1838 15885 5451 SRX8237036 Unrestricted 37.27 Metatranscriptome 3300028172 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0949-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028172 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 263706167 465172 53 24 19 76 SRX5244919 Unrestricted 64.77 Metatranscriptome 3300010187 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0600_T MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010187 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 84456490 206520 60 0 406 6 SRX2521485, SRX2521486 Unrestricted 0.0 Metatranscriptome 3300008691 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-52 University of Hawaii 3300008691 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 2192654 4480 1 2 133 34 0.0 Metatranscriptome 3300008590 *Microbiome Permanent Draft Microbial communities of corn and soybean rhizosphere soil from Ohio, USA Microbial communities of soybean rhizosphere soil from Ohio, USA - Soybean_Powermax_2a Auburn University 3300008590 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Plants Rhizosphere Roots Soil Rhisosphere soil 6620593 22646 684 300 11511 2194 SRX1078290 0.0 Metatranscriptome 3300013080 *Microbiome Permanent Draft Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013080 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes christopher.s.miller@ucdenver.edu Christopher S. Miller No Environmental Aquatic Wetlands Freshwater Unclassified freshwater wetlands 41.3778 -82.5108 201557766 560655 3045 736 275203 8105 SRX3015106 Unrestricted 0.0 Metatranscriptome 3300018993 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_150 - TARA_N000002703 Canada's Michael Smith Genome Sciences Centre 3300018993 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 35.9167 -37.2761 479148726 944285 6 111 15 428 0.0 Metatranscriptome 3300030525 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO143-VCO037SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030525 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2881 -71.1837 134314167 315685 57 40 2554 963 SRX4011318 Unrestricted 0.0 Metatranscriptome 3300052436 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 10-S25Day7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052436 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 67852702 136348 28 1 72 55 Unrestricted 91.72 Metatranscriptome 3300042576 *Microbiome Permanent Draft Estuarine microbial communities from the San Francisco Bay-Delta (SFBD), California, United States Metatranscriptome of estuarine water microbial communities from San Francisco Bay, California, United States - Dec19_SB_10_27D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042576 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 37.6183 -122.2916 19287537 43178 103 122 253 783 Unrestricted 41.95 Metatranscriptome 3300017203 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Baffin Bay in K medium with sea water and antibiotics, 6 C, 18 psu salinity and 189 ?mol photons light - unclassified eukaryote CCMP 2298 (MMETSP1143) National Center for Genome Resources 3300017203 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 77.0014 -77.2383 27903866 36181 11 12 12 14 0.0 Metatranscriptome 3300059506 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 52R_CW_T2_R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059506 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 342660867 859099 658 389 2511 2221 Unrestricted 49.68 Metatranscriptome 3300033572 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean - PS103-4.R1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300033572 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified marine -55.8778 1.056 1547239637 2807282 66 16 64 260 SRX5356509 Unrestricted 14.37 Metatranscriptome 3300017012 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 7 C, 32 psu salinity and 368 ?mol photons light - Asterionellopsis glacialis (MMETSP0713) National Center for Genome Resources 3300017012 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 41.325 -70.5667 20737454 26445 10 1 10 1 0.0 Metatranscriptome 3300018822 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_122 - TARA_N000001938 (ERX1782327-ERR1711869) Canada's Michael Smith Genome Sciences Centre 3300018822 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -8.9971 -139.1963 167120166 449498 49 17 334 428 0.0 Metatranscriptome 3300052379 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_163 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052379 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 88960907 228981 116 162 1000 861 Unrestricted 104.42 Metatranscriptome 3300009863 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 4, surface; RNA IDBA-UD Marine Biological Laboratory 3300009863 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 7.6 15198968 35043 318 390 1646 677 0.0 Metatranscriptome 3300008047 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Puerto Morelos, Mexico - Orbicella 8 C A metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300008047 Metatranscriptome Analysis megahit v. 0.2.0 No Yes momedinamunoz@gmail.com Monica _ Medina, Medina Medina No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral host 20.8778 -86.8431 332155484 493994 104 103 320 394 SRX3362278 Unrestricted 0.0 Metatranscriptome 3300003678 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - water-only treatment rep 1 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003678 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.099444 -73.604444 15992773 46887 3 361 130 1931 SRX2552959, SRX2552958 Unrestricted 0.0 Metatranscriptome 3300009276 *Microbiome Permanent Draft Eukaryotic communities of water from Amazon river, Brazil and North Atlantic ocean Eukaryotic communities of water from the North Atlantic ocean - ACM57 University of Georgia 3300009276 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 429393087 1280489 2 1 1 4 0.0 Metatranscriptome 3300031080 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T14 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031080 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 56158443 107843 66 22 89 205 SRX5794430 Unrestricted 24.29 Metatranscriptome 3300041703 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_489 MetaT AgResearch, New Zealand, Mosgeil 3300041703 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 46487239 106371 287 123 1594 144 0.0 Metatranscriptome 3300010146 *Microbiome Permanent Draft Soil microbial communities from various locations in USA and Cambodia to study soil gas exchange rates Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010146 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Grasslands Soil Unclassified Soil 37.406 -122.2269 245908234 614551 530 1063 38919 9455 SRX2525520 Unrestricted 0.0 Metatranscriptome 3300026454 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Colum_RepA_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026454 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 181334761 376032 103 80 336 554 SRX4797116 Unrestricted 22.37 Metatranscriptome 3300061808 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 88_cerealrye_3_T21 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061808 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 16373160 42111 49 53 509 484 Unrestricted 412.06 Metatranscriptome 3300017378 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine algae-associated eukaryotic communities from Gulf of Mexico in L1 medium with seawater, 25 C, 27 psu salinity and 749 ?mol photons light - Karenia brevis SP1 (MMETSP0574) National Center for Genome Resources 3300017378 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Algae Unclassified Unclassified Unclassified marine algae-associated 117018587 151166 5 7 13 9 0.0 Metatranscriptome 3300018667 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_011 - TARA_X000001334 (ERX1782401-ERR1711946) Canada's Michael Smith Genome Sciences Centre 3300018667 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 41.6666 2.7962 114250315 243794 2 16 1 94 0.0 Metatranscriptome 3300022525 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022525 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 230145252 539275 172 543 6883 3742 SRX4403343 Unrestricted 0.0 Metatranscriptome 3300005234 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI047_100m_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005234 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 180927753 536315 2065 1468 6359 4728 Unrestricted 0.0 Metatranscriptome 3300023537 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic - CSI5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023537 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 49.0448 13.618 6775829 13824 18 45 986 470 SRX4455216 Unrestricted 83.44 Metatranscriptome 3300059642 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 10R_AW_T1_R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059642 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 292755567 723637 408 270 1557 1589 Unrestricted 40.92 Metatranscriptome 3300017275 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Baffin Bay in ProV 50 medium with seawater and antibiotics, 6 C, 32 psu salinity and 194 ?mol photons light - unclassified eukaryote CCMP 2436 (MMETSP0983) National Center for Genome Resources 3300017275 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 76.3208 -75.8172 38153409 47979 10 5 9 2 0.0 Metatranscriptome 3300006592 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Leu_03_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006592 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 123696754 337113 320 225 1193 526 SRX3361499 Unrestricted 0.0 Metatranscriptome 3300032760 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_07AUG2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032760 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3941 -85.3741 112024631 195886 106 77 196 498 SRX7519895 Unrestricted 43.93 Metatranscriptome 3300008898 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of annulated tree boas from Steinhart Aquarium in San Francisco, USA - CAS03_Heart University of California, San Francisco 3300008898 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Heart Circulatory system Unclassified Heart 3101588 9534 0 0 0 0 SRX170643 0.0 Metatranscriptome 3300030543 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO410-VDE107SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030543 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.3092 -71.1031 290931456 661518 147 144 2006 2993 SRX4011343 Unrestricted 0.0 Metatranscriptome 3300003713 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003713 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 7844115 15877 184 616 389 1526 SRX2568522 Unrestricted 0.0 Metatranscriptome 3300029834 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Gly1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029834 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 33462271 66385 11 8 332 59 SRX5355879 Unrestricted 79.32 Metatranscriptome 3300003735 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Avena fatua rhizosphere microbial communities - H4_Bulk_Litter_23 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003735 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mkfstone@berkeley.edu, nuccio1@llnl.gov; mkfstone@berkeley.edu Mary Firestone, Erin Nuccio; Mary Firestone No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.97364 -123.117453 45867657 112878 286 353 1016 1472 SRX2558226 Unrestricted 0.0 Metatranscriptome 3300011037 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 80 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011037 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 22803497 53676 58 113 5367 605 Unrestricted 0.0 Metatranscriptome 3300016820 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in artificial seawater with 0.125% Artemia detritus and 0.8% agar, 23 C, 25 psu salinity and 332 ?mol photons light - Aurantiochytrium limacinum ATCCMYA-1381 (MMETSP0961) National Center for Genome Resources 3300016820 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 9.53333 138.11667 24745624 23170 2 21 1 34 0.0 Metatranscriptome 3300043802 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA116 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043802 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Unclassified Soil Unclassified soil 35.7877 -78.6442 23764647 53449 164 274 784 1406 Unrestricted 75.6 Metatranscriptome 3300030879 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030879 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 59.9979 10.7895 119090122 285139 72 131 455 746 SRX5351809 Unrestricted 0.0 Metatranscriptome 3300049093 *Microbiome Permanent Draft Soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA Metatranscriptome of soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA - 2005_C_N0_10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049093 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 42.013 -93.743 76469847 190177 103 111 747 663 Unrestricted 48.3 Metatranscriptome 3300007605 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S15 Surf_B metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007605 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 92608742 298704 2853 2188 7017 6651 SRX3787147 Unrestricted 0.0 Metatranscriptome 3300004556 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 1_LOW4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004556 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 51580484 145620 5314 125 13753 335 SRX2779568 Unrestricted 0.0 Metatranscriptome 3300032734 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Amb9_26May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032734 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 878240332 1499658 8 7 21 159 SRX6411416 Unrestricted 0.0 Metatranscriptome 3300052743 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_175B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052743 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Bulk soil Soil 38.992973 -123.067448 162327618 431574 260 210 1977 1262 Unrestricted 122.03 Metatranscriptome 3300041831 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_168 MetaT AgResearch, New Zealand, Mosgeil 3300041831 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 40752349 85656 306 122 2276 352 0.0 Metatranscriptome 3300010427 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS908_80_TP1_13H Marine Biological Laboratory 3300010427 Metatranscriptome Analysis CLC genomics wb7 released per JGI data release policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 4097842 8907 14 1 171 6 0.0 Metatranscriptome 3300044943 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P34SSC2_190917_i (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300044943 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 107139119 265339 129 276 1433 1416 SRX20650870 Unrestricted 77.9 Metatranscriptome 3300021888 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-16 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021888 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine -18.2496 3.7992 62508747 142823 30 65 99 225 SRX6381278 Unrestricted 0.0 Metatranscriptome 3300019256 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Metatranscriptome of peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin10_10_metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019256 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 331050041 735007 345 769 9904 4937 SRX3887039 Unrestricted 0.0 Metatranscriptome 3300047429 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81957fc8-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047429 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 105756531 275050 208 166 857 980 Unrestricted 58.05 Metatranscriptome 3300032441 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day12_8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032441 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 23163488 39413 15 0 94 3 SRX6857987 Unrestricted 173.29 Metatranscriptome 3300036409 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen9, Rep 1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036409 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 97648814 132102 4 0 65 0 SRX8382704 Unrestricted 142.39 Metatranscriptome 3300016847 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Corio Bay in f/2 medium with Monterey Bay seawater with selenium, w/o silicate, 21 C, 35 psu salinity and 364 ?mol photons light - Micromonas sp. CS-222 (MMETSP1393) National Center for Genome Resources 3300016847 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -36.1 144.6 11194771 13620 2 1 4 1 0.0 Metatranscriptome 3300006384 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006384 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 169363391 478689 3141 9983 6465 23090 SRX3196465 Unrestricted 0.0 Metatranscriptome 3300037612 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_M1_C1_D1_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037612 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 92918266 189930 408 2415 4291 7652 SRX9382712 Unrestricted 134.66 Metatranscriptome 3300028181 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0762-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028181 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 221527687 392170 38 59 28 112 SRX5254549 Unrestricted 64.91 Metatranscriptome 3300046041 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-68 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046041 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4205 -64.1498 11487627 27341 183 19 280 301 Unrestricted 15.77 Metatranscriptome 3300008916 *Microbiome Permanent Draft Microbial communities of nutrient treated water from Blanes Bay, Barcelona, Spain Microbial communities of nutrient treated water from Blanes Bay, Barcelona, Spain - KA2 Sodertorn University 3300008916 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Bay water 41.666 2.8 30522264 115222 561 356 3196 2853 ERX1055472 0.0 Metatranscriptome 3300050368 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T3_3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050368 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 170770032 293945 14 15 55 62 Unrestricted 92.78 Metatranscriptome 3300003480 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS861_Marker113_RNA 3300003480 Metatranscriptome Analysis CLC genomics workbench released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.923 -129.988104 2079981 6319 45 6 215 14 0.0 Metatranscriptome 3300008295 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.9.3V73.15dpc CCME-COLORADO 3300008295 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 10436334 37726 50 2 385 7 0.0 Metatranscriptome 3300010199 *Microbiome Permanent Draft Host-associated microbial communities from peat moss Sphagnum species from Minnesota, USA Peat moss associated microbial communities from Sphagnum species from Minnesota, USA - S1T2_Fd - Sphagnum fallax MT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010199 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes joel.kostka@biology.gatech.edu Joel Kostka No Host-associated Plants Unclassified Peat moss Unclassified Peat moss associated 47.5028 -93.4828 206860343 383335 159 340 954 3774 SRX3007418 Unrestricted 0.0 Metatranscriptome 3300004574 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 26_LOW6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004574 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 26733063 68670 891 22 3119 49 SRX2779913 Unrestricted 0.0 Metatranscriptome 3300041575 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_489 MetaT AgResearch, New Zealand, Mosgeil 3300041575 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 98974829 214225 358 64 2690 135 0.0 Metatranscriptome 3300023696 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 52R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023696 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 73687518 160215 124 64 780 1372 SRX4474689 Unrestricted 32.55 Metatranscriptome 3300018967 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_036 - TARA_N000000316 (ERX1789557-ERR1719488) Canada's Michael Smith Genome Sciences Centre 3300018967 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 20.8183 63.5047 314165986 1074978 21 22 80 289 0.0 Metatranscriptome 3300016886 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in NEPC medium w/o nitrate, at 20 C, 30 psu salinity and 766 ?mol photons light - Chaetoceros neogracile CCMP 1317 (MMETSP0753) National Center for Genome Resources 3300016886 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 27882743 28269 19 1 16 3 0.0 Metatranscriptome 3300053649 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T1_4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053649 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 47151385 102179 28 9 185 31 Unrestricted 821.51 Metatranscriptome 3300032419 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day12_9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032419 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 19438428 33427 16 0 64 1 SRX6858017 Unrestricted 145.21 Metatranscriptome 3300006609 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_Marker33_RNA 3300006609 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 7392897 24320 236 38 1367 82 0.0 Metatranscriptome 3300041657 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_60 MetaT AgResearch, New Zealand, Mosgeil 3300041657 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 40300557 90856 203 59 977 104 0.0 Metatranscriptome 3300019274 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071405CT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019274 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 354743498 771617 167 244 2400 4686 SRX3921443 Unrestricted 0.0 Metatranscriptome 3300048843 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048843 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.347657 -119.2808 32600124 52720 4 0 10 1 Unrestricted 123.68 Metatranscriptome 3300046185 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_6_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046185 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 66020019 112213 3 0 21 0 Restricted 103.48 Metatranscriptome 3300008790 *Microbiome Permanent Draft Microbial communities from seawater in eastern North Pacific Ocean Microbial communities from seawater in eastern North Pacific Ocean - P8 free-living University of Georgia 3300008790 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ocean water 8626253 29740 8 1 128 87 0.0 Metatranscriptome 3300049110 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 67+70 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049110 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.8286 -82.5011 20105514 38048 39 34 80 180 Restricted 48.8 Metatranscriptome 3300023558 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRE5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023558 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 49.0448 13.618 28996861 44642 21 26 435 227 SRX4454968 Unrestricted 23.53 Metatranscriptome 3300030725 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - AG5_1298_20m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030725 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 70.5467 -122.9077 75355457 148972 188 22 228 818 SRX5651177 Unrestricted 17.22 Metatranscriptome 3300020102 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um, replicate a, metaT Georgia Genomics Facility 3300020102 Metatranscriptome Analysis Trinity 2.06 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 22999224 73431 9013 1759 20607 4999 0.0 Metatranscriptome 3300034792 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Metatranscriptome of Bradyrhizobium sp. W culture communities from SDSU, California, USA - Exp#2 BR3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034792 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Engineered Lab culture Bacteria Culture media Unclassified defined medium 32.7717 -117.0735 21422331 28974 0 0 0 0 SRX8293514 Unrestricted 414.69 Metatranscriptome 3300037053 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Omics01_030518 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037053 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 385931256 808341 1041 74 1914 1769 SRX8834023 Unrestricted 16.24 Metatranscriptome 3300017570 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 15 C, 28 psu salinity and 679 ?mol photons light - Alexandrium fundyense CCMP 1719 (MMETSP0197) (SRX549003-SRR1294389) National Center for Genome Resources 3300017570 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 43.1 70.782 142257 314 0 0 0 0 0.0 Metatranscriptome 3300008765 *Microbiome Permanent Draft Microbial communities of mouse gut induced with colitis from Vienna, Austria Microbial communities of mouse gut induced with colitis from Vienna, Austria - 9967_ATGCT University of Vienna 3300008765 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Stomach Digestive system Forestomach Foregut of mice 29332082 111879 217 2 1913 40 SRX326434 0.0 Metatranscriptome 3300047431 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81958158-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047431 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 370472595 936658 326 229 1687 1409 Unrestricted 22.04 Metatranscriptome 3300036316 *Microbiome Permanent Draft Rumen fluid microbial communities from dairy cows in UC Davis, California, USA Metatranscriptome of rumen fluid microbial communities from dairy cow in UC Davis, California, USA - UCD_Rumen_Seaweed_2553 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300036316 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bmroque@ucdavis.edu Breanna Roque No Host-associated Mammals Stomach Digestive system Rumen fluid rumen fluid 38.5368 -121.7595 148141265 288685 1 13 110 173 Unrestricted 0.0 Metatranscriptome 3300018614 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS678_3p0_dT J. Craig Venter Institute (JCVI) 3300018614 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 58.581234 18.232801 71590752 160966 638 426 1123 493 0.0 Metatranscriptome 3300005484 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_0830 MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005484 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 33236051 83835 964 51 3519 126 SRX2521856, SRX2521857 Unrestricted 0.0 Metatranscriptome 3300031026 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T25 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031026 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 22288614 42540 64 17 107 146 SRX5352468 Unrestricted 17.64 Metatranscriptome 3300038158 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_N3_C1_D3_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038158 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 76572569 157932 430 1807 4074 5109 SRX9390225 Unrestricted 108.54 Metatranscriptome 3300011058 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 22 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011058 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 51602446 121670 164 1015 9344 2325 Unrestricted 0.0 Metatranscriptome 3300008398 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34712 J. Craig Venter Institute (JCVI) 3300008398 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 40503 208 0 0 3 0 0.0 Metatranscriptome 3300018693 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_093 - TARA_N000001288 (ERX1789601-ERR1719212) Canada's Michael Smith Genome Sciences Centre 3300018693 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -34.0374 -73.09 123404387 256234 1 23 3 107 0.0 Metatranscriptome 3300037082 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - No_Particle_Incubation_A_031718 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037082 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 374767189 791666 580 49 1116 806 SRX8842537 Unrestricted 27.82 Metatranscriptome 3300046443 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_9_Control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046443 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1915 -81.3585 108147267 263346 85 183 1192 798 Unrestricted 18.88 Metatranscriptome 3300031424 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_150 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031424 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92045766 -106.94845279 110404990 263580 432 390 3360 1769 SRX8133219 Unrestricted 23.94 Metatranscriptome 3300005565 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom. Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel7S_1600h metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005565 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sgtringe@lbl.gov, rmmckay@bgsu.edu Susannah Tringe, Robert M. McKay No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.69957 -83.2941 406027352 1119152 1491 7792 4195 16672 SRX3556430 Unrestricted 0.0 Metatranscriptome 3300007337 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S7 Surf_B metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007337 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 157623797 423997 3176 2340 8119 8577 SRX3196611 Unrestricted 0.0 Metatranscriptome 3300016728 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Metatranscriptome of peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin01_10_metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016728 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 276342709 616358 212 450 7634 2704 SRX3204065 Unrestricted 0.0 Metatranscriptome 3300036574 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Growout1_06 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036574 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 244880269 517937 774 56 1506 1404 SRX8820305 Unrestricted 19.83 Metatranscriptome 3300049545 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C13_B_4_drought (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049545 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 39657732 99751 90 49 255 303 Unrestricted 227.96 Metatranscriptome 3300009254 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from Amazon river, Brazil - RCM20 University of Georgia 3300009254 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic River Freshwater Unclassified River water 178786728 587217 54 59 767 268 SRX864142 0.0 Metatranscriptome 3300029642 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant-associated microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029642 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9573 -83.9276 60619483 112743 1 1 4 1 SRX5787084, SRX5787085 Unrestricted 0.0 Metatranscriptome 3300059608 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 166R_SD_T3_R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059608 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 66388415 167159 215 201 999 1180 Unrestricted 61.02 Metatranscriptome 3300017126 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in Aquil nutrients amended seawater with alpha-glycerophosphate, at 20 C, 35 psu salinity and 733 ?mol photons light - Emiliania huxleyi CCMP 370 (MMETSP1156) National Center for Genome Resources 3300017126 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 34641523 44796 3 2 1 3 0.0 Metatranscriptome 3300019119 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_068 - TARA_N000000701 (ERX1789718-ERR1719442) Canada's Michael Smith Genome Sciences Centre 3300019119 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -31.0536 4.6742 135624145 366523 4 16 10 120 0.0 Metatranscriptome 3300031816 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI2 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031816 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 49.044 13.617 49146965 69246 28 72 340 384 SRX4454738, SRX5243121 Unrestricted 0.0 Metatranscriptome 3300021928 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S9 C1 B7 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021928 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 38.420489 -13.575978 132936703 251052 133 94 271 281 SRX5204102 Unrestricted 0.0 Metatranscriptome 3300048685 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Metatranscriptome of soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR18 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048685 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.3476 -119.2808 34813507 45383 7 1 14 18 Unrestricted 83.11 Metatranscriptome 3300025753 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepA_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300025753 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 107748996 218202 54 67 303 545 SRX4547609 Unrestricted 17.04 Metatranscriptome 3300010901 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS5_55_TP1_12H Marine Biological Laboratory 3300010901 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933 -130.014 731930 2466 39 6 41 12 0.0 Metatranscriptome 3300028257 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028257 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 92959544 181043 54 53 125 352 SRX5245636 Unrestricted 28.22 Metatranscriptome 3300009564 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 6m depth; RNA IDBA-UD Marine Biological Laboratory 3300009564 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 6.5 110855743 266084 639 692 2996 1431 0.0 Metatranscriptome 3300006583 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Val_01_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006583 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 81451367 215032 221 192 964 464 SRX3361917 Unrestricted 0.0 Metatranscriptome 3300018707 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_067 - TARA_N000000746 (ERX1789613-ERR1719509) Canada's Michael Smith Genome Sciences Centre 3300018707 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -32.1745 17.6991 123924378 211221 0 7 3 47 0.0 Metatranscriptome 3300039431 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Metatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_05 (Metagenome Metatranscriptome) - NovaSeq (version 2) DOE Joint Genome Institute (JGI) 3300039431 Metatranscriptome Analysis MEGAHIT v. 1.2.9 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen 49.6935 -112.8418 648921434 1051686 8 39 117 161 SRX4804157, SRX7705828 Unrestricted 0.0 Metatranscriptome 3300016980 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in f/2 medium with Sargasso seawater, no silicate, 21 C, 35 psu salinity and 670 ?mol photons light - Crustomastix stigmatica CCMP 3273 (MMETSP0803_2) National Center for Genome Resources 3300016980 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 40.9 14.15 18644941 24668 13 6 9 10 0.0 Metatranscriptome 3300056981 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Western Region, Iceland - Sphagnum teres H2_TE_ICE (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056981 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 307786612 630615 204 113 701 525 Unrestricted 48.03 Metatranscriptome 3300023674 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 90R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023674 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 46531270 97225 49 22 456 610 SRX4479786 Unrestricted 27.4 Metatranscriptome 3300004596 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 37 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004596 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 76829141 265630 4160 2215 15746 4896 Unrestricted 0.0 Metatranscriptome 3300006410 *Microbiome Permanent Draft Algae and Fungi communities from freshwater lake in Auvergne, France during and after algae bloom Algae and Fungi communities from freshwater lake in Auvergne, France - collected at the beginning of algae bloom, incubated in lab for 4 day Institut Pasteur, Lille, France 3300006410 Metatranscriptome Analysis Trinity 2.06 released per JGI data release policy No Yes luenlee@yahoo.com L Monchy, Luen Luen LI No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 45.49 2.88 47577930 61698 197 16 369 37 0.0 Metatranscriptome 3300008858 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_3044 Massachusetts Institute of Technology 3300008858 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 6455606 22057 14 8 375 746 0.0 Metatranscriptome 3300050701 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae axenic culture microbial communities from LLNL, Livermore, California, USA - f26_d5_W_S41 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050701 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 20600301 23733 4 0 5 2 Restricted 189.16 Metatranscriptome 3300003754 *Microbiome Permanent Draft Freshwater and sediment microbial communities from a dead zone in Lake Erie, USA Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003754 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes rmmckay@bgsu.edu Robert McKay, Robert M. McKay No Environmental Aquatic Lentic Freshwater Unclassified Freshwater and sediment 43.933506 -78.003845 78258042 204576 135 228 257 981 SRX2554950, SRX2554949 Unrestricted 0.0 Metatranscriptome 3300006569 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006569 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 9589387 30375 680 1737 1986 3709 SRX3196368 Unrestricted 0.0 Metatranscriptome 3300048744 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Metatranscriptome of hydrothermal vent plume microbial communities from North Pacific Ocean - CTD-AT42-06-008-2490m-0.65 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048744 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 9.83807 -104.29118 133388662 308546 311 336 1216 1792 Unrestricted 52.64 Metatranscriptome 3300036658 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp02_R38 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036658 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 273764559 535436 413 43 853 972 SRX8836684 Unrestricted 30.82 Metatranscriptome 3300009530 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 4m depth; RNA IDBA-UD Marine Biological Laboratory 3300009530 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 7 17587161 45736 835 808 3308 1628 0.0 Metatranscriptome 3300024481 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_0h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024481 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 216591240 454047 140 249 1289 2531 SRX4547669 Unrestricted 20.16 Metatranscriptome 3300008810 *Microbiome Permanent Draft Microbial communities from dairy cow rumen, for metatranscriptome studies Microbial communities from dairy cow rumen, for metatranscriptome studies - 2155_control diet Aarhus University 3300008810 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Stomach Digestive system Rumen Holstein breed cow rumen 18900503 91369 542 86 6697 248 SRX195368 0.0 Metatranscriptome 3300032755 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Shad10_28May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032755 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 1232388528 2040351 33 13 38 186 SRX6411419 Unrestricted 0.0 Metatranscriptome 3300003576 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003576 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes pettridge2@llnl.gov, nuccio1@llnl.gov; pettridge2@llnl.gov Jennifer Pett-Ridge, Erin Nuccio; Jennifer Pett-Ridge No Environmental Terrestrial Grasslands Soil Bulk soil Avena fatua rhizosphere 38.972988 -123.116539 98597078 304249 312 183 908 1603 SRX2563407 Unrestricted 0.0 Metatranscriptome 3300041536 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_315 MetaT AgResearch, New Zealand, Mosgeil 3300041536 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 18721677 31710 163 137 494 266 0.0 Metatranscriptome 3300058670 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP15.1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300058670 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 386714937 820661 45 41 257 243 Unrestricted 63.91 Metatranscriptome 3300037545 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Metatranscriptome of lab enriched marine microbial communities from Marineland, Florida, USA - SWPA_R2_TP1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037545 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6475 -82.3464 83133168 172313 150 38 299 198 SRX9144794 Unrestricted 57.71 Metatranscriptome 3300016781 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101409CT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016781 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 425132249 909870 138 285 1974 3270 SRX3780775 Unrestricted 0.0 Metatranscriptome 3300030932 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Litter GP-1B (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030932 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr; dcullen@wisc.edu Francis M. Martin; Daniel Cullen No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 45.7544 -113.9094 456647656 1184643 4517 648 8091 946 SRX3343219 Unrestricted 0.0 Metatranscriptome 3300039272 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Anb5 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300039272 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 208829530 458408 219 111 956 677 SRX9404226 Unrestricted 33.93 Metatranscriptome 3300010866 *Microbiome Permanent Draft Forest soil eukaryotic communities from Alaska, USA, for a soil warming experiment in a boreal forest Boreal forest soil eukaryotic communities from Alaska, USA - C1-3 Metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010866 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes treseder@uci.edu Kathleen Treseder No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Boreal forest soil 63.883 -145.733 240278980 538612 122 285 898 3332 SRX3007248 Unrestricted 0.0 Metatranscriptome 3300029666 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_80m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029666 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 51898341 104915 146 34 2538 184 SRX5337983 Unrestricted 38.7 Metatranscriptome 3300018671 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_078 - TARA_B100000524 Canada's Michael Smith Genome Sciences Centre 3300018671 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -30.1885 -43.2831 71107221 247133 112 48 221 824 0.0 Metatranscriptome 3300018570 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from upper and lower halo cline of Thetis Basin, Eastern Mediterranean Sea Metatranscriptome of marine microbial communities from upper halo cline of Thetis Basin, Eastern Mediterranean Sea - 18_4 Woods Hole Oceanographic Institution 3300018570 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 34.4 22.08 20433191 66994 815 92 2354 208 0.0 Metatranscriptome 3300020218 *Microbiome Permanent Draft Metatranscriptome of freshwater microbial communities within cyanobacterial aggregates from lake Taihu, China Freshwater microbial communities within cyanobacterial aggregates from lake Taihu, China - 10_4_12:00 total sequence Beijing Novogene Bioinformatics Technology Co., Ltd 3300020218 Metatranscriptome Analysis Trinity v2.4 released by JGI data releasing policy No Yes hycai@niglas.ac.cn haiyuan cai No Environmental Aquatic Lake Freshwater Unclassified freshwater 31.3 120.11 72757039 155566 113 45 91 484 0.0 Metatranscriptome 3300049082 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_5 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300049082 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 67919510 160221 122 22 317 168 Unrestricted 23.97 Metatranscriptome 3300026413 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0927-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026413 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 136040582 214773 16 3 6 30 SRX4796199 Unrestricted 85.31 Metatranscriptome 3300009357 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from the North Atlantic ocean - ACM13 University of Georgia 3300009357 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 65021362 198649 48 67 301 461 0.0 Metatranscriptome 3300018982 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_082 - TARA_N000001384 (ERX1782271-ERR1711935) Canada's Michael Smith Genome Sciences Centre 3300018982 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -47.2007 -57.9446 534936841 1197120 169 25 360 451 0.0 Metatranscriptome 3300031556 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB9_538_SCM (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031556 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 77.9995 -150.0065 112695743 237308 132 36 278 981 SRX5652702 Unrestricted 0.0 Metatranscriptome 3300046270 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_4_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046270 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 49915975 83644 1 0 19 1 Restricted 151.1 Metatranscriptome 3300046638 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - G2-R3-A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046638 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3569 19.0504 118500033 266334 144 134 478 367 Unrestricted 30.38 Metatranscriptome 3300035405 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Antarctic Ocean - DFB2_14 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035405 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified Seawater -46.5954 142.0314 355071660 718369 1070 91 1965 1906 SRX8226843 Unrestricted 25.29 Metatranscriptome 3300017486 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Gulf of Mexico in f/2 medium with artificial seawater w/o silicate, 18 C, 28 psu salinity and 715 ?mol photons light - Lingulodinium polyedrum CCMP 1738 (MMETSP1033) National Center for Genome Resources 3300017486 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 27.8 -97.13 78538785 102722 10 2 18 1 0.0 Metatranscriptome 3300042024 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Metatranscriptome of estuary water microbial communities from Narragansett Bay, Rhode Island, USA - E3_negO2A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042024 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.9078 -71.5683 374247303 681971 661 197 1297 1472 SRX14875671 Unrestricted 21.25 Metatranscriptome 3300033528 *Microbiome Permanent Draft Rhizosphere microbial communities from salt marsh grasses in Alabama, United States Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300033528 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes omason@fsu.edu Olivia Mason No Host-associated Plants Rhizosphere Roots Unclassified rhizosphere 30.2619 -88.2383 327230056 683279 707 2188 9428 8530 SRX7525044 Unrestricted 21.75 Metatranscriptome 3300053656 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T3_4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053656 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 102319535 205246 61 15 200 117 Unrestricted 0.0 Metatranscriptome 3300019211 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019211 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 4.2396 -73.2024 115295265 289531 446 57 39826 547 SRX3939581 Unrestricted 0.0 Metatranscriptome 3300031891 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLA3 metaT (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031891 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified Plant litter 49.0431 13.617 34653779 74182 98 516 1024 2666 SRX5229539, SRX3937174 Unrestricted 0.0 Metatranscriptome 3300036373 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen6, Rep 1, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036373 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 18878900 21362 0 0 0 1 SRX8381191, SRX8381192 Unrestricted 0.0 Metatranscriptome 3300008905 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of annulated tree boas from Steinhart Aquarium in San Francisco, USA - CAS03_Liver University of California, San Francisco 3300008905 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Biliary tract Digestive system Liver Liver 3444642 9735 0 0 0 1 SRX170618 0.0 Metatranscriptome 3300060244 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 2R_CW_T1_R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300060244 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 22961890 60535 113 101 424 646 Unrestricted 96.98 Metatranscriptome 3300009717 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from Louisiana Shelf, Gulf of Mexico - GoM_2015_C6C_236_2m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009717 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 28.8679 -90.4764 3566028 7039 84 63 1020 1165 Unrestricted 0.0 Metatranscriptome 3300017084 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, low silicate, at 5 C, 35 psu salinity and 725 ?mol photons light - Thalassiosira antarctica CCMP 982 (MMETSP0904) National Center for Genome Resources 3300017084 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 30596990 41534 33 8 45 14 0.0 Metatranscriptome 3300042426 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_sp7_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042426 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 42472575 54766 1 1 13 4 Unrestricted 335.6 Metatranscriptome 3300008651 *Microbiome Permanent Draft Microbial communities of saline water collected from the North Sea in Germany Microbial communities of saline water collected from the North Sea in Germany - HE327_13 Goettingen Genomics Laboratory 3300008651 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified North sea 54.4365 8.2328 36231368 125417 141 310 876 1556 0.0 Metatranscriptome 3300004511 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 121_LOW14 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004511 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 11469958 23604 42 2 250 6 SRX2780258 Unrestricted 0.0 Metatranscriptome 3300004610 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004610 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 117006134 383528 7267 2629 23970 5571 Unrestricted 0.0 Metatranscriptome 3300008550 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-21 University of Hawaii 3300008550 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 4899064 9801 14 3 178 44 0.0 Metatranscriptome 3300030844 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 EcM (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030844 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7585 6.3578 560276105 1807320 12563 3012 30487 9879 SRX3347340 Unrestricted 0.0 Metatranscriptome 3300018953 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_151 - TARA_N000002753 Canada's Michael Smith Genome Sciences Centre 3300018953 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 36.1631 -29.0143 469752333 971930 10 120 16 424 0.0 Metatranscriptome 3300026435 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepA_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026435 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 126973961 267271 79 85 480 702 SRX4796914 Unrestricted 22.45 Metatranscriptome 3300054994 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T3_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300054994 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 59896593 110788 18 0 140 20 Unrestricted 0.0 Metatranscriptome 3300017322 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Baffin Bay in ProV 50 medium with seawater and antibiotics, 6 C, 18 psu salinity and 523 ?mol photons light - unclassified eukaryote CCMP 2293 (MMETSP0988) National Center for Genome Resources 3300017322 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 78.5922 -74.4922 40448754 60753 5 13 11 14 0.0 Metatranscriptome 3300020072 *Microbiome Permanent Draft Anaerobic biogas reactor microbial communites from Washington, USA Anaerobic biogas reactor microbial communites from Seattle, Washington, USA - Biogas_R2-B RNA time zero (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300020072 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dacb@uw.edu David Beck No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic biogas reactor 47.6525 -122.3049 198255298 399115 37 317 17267 2262 SRX7225068 Unrestricted 0.0 Metatranscriptome 3300046635 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - P1-R2-A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046635 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.355 19.0438 582353969 1218595 4 0 41 4 Unrestricted 15.34 Metatranscriptome 3300059673 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_13 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059673 Metatranscriptome Analysis megahit v. 2021-11-04 03:06:05 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 191318027 441740 239 64 679 288 Unrestricted 0.0 Metatranscriptome 3300035408 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0606M12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035408 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8962 -97.0386 66151623 137543 143 189 3408 498 SRX8236826 Unrestricted 30.19 Metatranscriptome 3300031187 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_L6_0mM_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031187 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 15666666 26470 2 0 1 2 SRX5783517 Unrestricted 72.39 Metatranscriptome 3300021943 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-27M (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021943 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 156020805 308635 55 57 100 216 SRX5203110 Unrestricted 0.0 Metatranscriptome 3300018087 *Microbiome Permanent Draft Transcriptomes of anaerobic gut fungi Metatranscriptome of a modeled community of anaerobic gut fungi from phylum Neocallimastigomycota from Stillwater, Oklahoma, United States - 27 AGF Novogene 3300018087 Metatranscriptome Analysis Trinity released by JGI data releasing policy No Yes noha@okstate.edu Noha Youssef No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified feces 36.1089 -97.1136 369175878 540529 30 4 69 129 0.0 Metatranscriptome 3300023441 *Microbiome Finished Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Soil microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B2.ctno.R1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300023441 Metatranscriptome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes colemanderr@gmail.com Devin Coleman-Derr No Environmental Terrestrial Unclassified Soil Agricultural land field soil 36.339058 -120.12031 394989161 1015156 83 65 175 161 0.0 Metatranscriptome 3300017059 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of freshwater eukaryotic communities from Lake Texoma, Oklahoma in f/2 medium with seawater, 18 C, 18 psu salinity and 201 ?mol photons light - Prymnesium parvum Texoma1 (MMETSP0006_2) National Center for Genome Resources 3300017059 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 33.98 -96.67 31211271 40283 1 6 1 3 0.0 Metatranscriptome 3300058931 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP14.1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300058931 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 442567703 923599 43 37 253 234 Unrestricted 62.58 Metatranscriptome 3300045470 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P26SSC2_191112_f (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300045470 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 52592438 134384 45 161 1013 778 SRX20650847 Unrestricted 141.87 Metatranscriptome 3300049699 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Weichs, Bavaria, Germany - PB8_MT_210318 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049699 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 48.39537892 11.44760761 140881269 286077 9 8 124 15 Unrestricted 39.0 Metatranscriptome 3300036205 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp03_R62_R64_ (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036205 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 147186952 323474 241 106 609 1399 SRX8838901 Unrestricted 28.15 Metatranscriptome 3300006387 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Oil_02_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006387 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 188698798 501580 498 523 1804 1032 SRX2751976 Unrestricted 0.0 Metatranscriptome 3300016844 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Adriatic Sea in f/2 medium with sea water, 20 C, 36 psu salinity and 704 ?mol photons light - Skeletonema marinoi FE60 (MMETSP1040) National Center for Genome Resources 3300016844 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 43.5 14.5 21972543 25299 18 1 30 1 0.0 Metatranscriptome 3300008533 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - C6.FECAL.14dpc CCME-COLORADO 3300008533 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 3663960 14440 31 2 892 9 0.0 Metatranscriptome 3300030572 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO137-ANR103SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030572 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.3106 -71.1018 503554535 1099524 126 163 1451 2249 SRX4011186 Unrestricted 0.0 Metatranscriptome 3300018930 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_082 - TARA_N000001396 (ERX1782254-ERR1712008) Canada's Michael Smith Genome Sciences Centre 3300018930 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -47.2007 -57.9446 379910408 822960 63 22 163 272 0.0 Metatranscriptome 3300017062 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Ross Sea in L1 medium with seawater, 2 C, 33 psu salinity and 569 ?mol photons light - Phaeocystis antarctica CCMP 1374 (MMETSP1444) National Center for Genome Resources 3300017062 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -77.8333 163.0 20349887 30294 3 7 3 7 0.0 Metatranscriptome 3300021221 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from nest - French Guiana - 18a-5 mRNA SA University of Luxembourg 3300021221 Metatranscriptome Analysis CLC Genomics Workbench Version 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 5.06224 -53.047407 18023463 65827 0 0 2 4 0.0 Metatranscriptome 3300009835 *Microbiome Permanent Draft Sorghum rhizosphere soil microbial communities from California, USA Sorghum rhizosphere soil microbial communities under drought stress in Albany, CA - sample B QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300009835 Metatranscriptome Analysis Trinity released per PI Yes Yes xuling@berkeley.edu Ling Xu No Host-associated Plants Rhizosphere Roots Soil soil 37.887207 -122.304401 46089914 121817 2745 8017 10353 21664 0.0 Metatranscriptome 3300019277 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071412AT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019277 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 370910160 822008 199 312 3849 4462 SRX3921591 Unrestricted 0.0 Metatranscriptome 3300052772 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_82 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052772 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 54001767 141435 184 131 665 786 Unrestricted 89.12 Metatranscriptome 3300003293 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 44 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003293 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 17274718 48413 63 155 1302 780 Unrestricted 0.0 Metatranscriptome 3300050696 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae culture inoculated with mixed bacterial community from LLNL, Livermore, California, USA - f21_d5_A_S32 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050696 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 31754516 48936 2 0 5 2 Restricted 122.2 Metatranscriptome 3300026438 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0921-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026438 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 148651129 272030 33 12 49 58 SRX4796194 Unrestricted 68.77 Metatranscriptome 3300033525 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_28AUG2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300033525 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3941 -85.3741 326643868 561690 144 102 250 679 SRX7706892 Unrestricted 34.75 Metatranscriptome 3300046229 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_5_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046229 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 99696287 146667 2 1 21 1 Restricted 116.15 Metatranscriptome 3300010080 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_0_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010080 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 36802657 82847 113 678 14918 5465 Unrestricted 0.0 Metatranscriptome 3300018731 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_151 - TARA_N000002755 (ERX1782345-ERR1712158) Canada's Michael Smith Genome Sciences Centre 3300018731 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 36.1736 -29.003 150704012 299250 5 14 22 254 0.0 Metatranscriptome 3300018964 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_065 - TARA_N000000939 (ERX1782328-ERR1712130) Canada's Michael Smith Genome Sciences Centre 3300018964 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -35.2421 26.3048 518264709 1135549 40 43 236 368 0.0 Metatranscriptome 3300008908 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of annulated tree boas from Steinhart Aquarium in San Francisco, USA - CAS05_Lung University of California, San Francisco 3300008908 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Lung Respiratory system Unclassified Lung 4419188 12925 0 0 0 0 SRX170613 0.0 Metatranscriptome 3300004577 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 20_HOW5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004577 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 29516537 71584 1393 481 2907 948 SRX2779775 Unrestricted 0.0 Metatranscriptome 3300046613 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-118 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046613 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4552 -64.1995 79007081 181888 808 23 1410 531 Unrestricted 16.21 Metatranscriptome 3300049466 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_15 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300049466 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 536448267 1183997 407 116 1317 527 Unrestricted 34.44 Metatranscriptome 3300030626 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO410-VDE110SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030626 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.3092 -71.1031 997588215 2173487 245 255 6811 3681 SRX4011346 Unrestricted 0.0 Metatranscriptome 3300031342 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_L6_0mM_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031342 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 17241331 27865 0 0 0 7 SRX5783468 Unrestricted 43.84 Metatranscriptome 3300028530 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028530 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 148574447 310010 80 269 1010 1705 SRX4823103 Unrestricted 23.44 Metatranscriptome 3300053661 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T1_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053661 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 165029952 333570 85 35 266 170 Unrestricted 0.0 Metatranscriptome 3300060344 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 36R_AW_T1_R4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300060344 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 380684862 910629 490 311 2380 2011 Restricted 39.61 Metatranscriptome 3300032072 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Soil microbial communities from Bohemian Forest, Czech Republic - CSI2 metaT (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300032072 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 49.044 13.617 37621988 88747 14 180 401 964 SRX3937173, SRX5229542 Unrestricted 0.0 Metatranscriptome 3300011286 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0200 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011286 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 7.1924 -25.5945 33499193 70810 7 7 363 506 SRX3323612 Unrestricted 0.0 Metatranscriptome 3300059605 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 71R_SD_T2_R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059605 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 305433024 770421 326 239 1699 1627 Unrestricted 57.73 Metatranscriptome 3300030781 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_S7_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030781 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -22.5 -33.0 464413814 1672984 577 482 980 1499 SRX3342165 Unrestricted 0.0 Metatranscriptome 3300008666 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.13.3OB.15dpc CCME-COLORADO 3300008666 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 10568368 38492 40 2 413 9 0.0 Metatranscriptome 3300021925 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-51M (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021925 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 107334228 227880 71 66 185 257 SRX5203107 Unrestricted 0.0 Metatranscriptome 3300019192 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA3 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019192 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 49.0431 13.617 25540583 57884 17 142 537 924 SRX3937290 Unrestricted 0.0 Metatranscriptome 3300051643 *Microbiome Permanent Draft Sediment microbial communities from various environments and locations in Europe Metatranscriptome of sediment microbial communities from Baltic Sea, Sweden - H2D1S (Metagenome Metatranscriptome) (IMG v5.1) (version 2) DOE Joint Genome Institute (JGI) 3300051643 Metatranscriptome Analysis megahit v. 2021-01-01 15:59:34 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes o.eyice@qmul.ac.uk Ozge Eyice No Environmental Aquatic Sediment Marine Unclassified Sediment 58.9344 17.7391 50611128 116119 24 123 447 615 Unrestricted 0.0 Metatranscriptome 3300010305 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_0.1_0.8_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010305 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 39.2454 -76.028 31119070 70622 172 406 6995 4048 SRX2526714 Unrestricted 0.0 Metatranscriptome 3300031634 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRU1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031634 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 59.9979 10.7895 22482968 36911 3 17 10 67 SRX5807944 Unrestricted 14.39 Metatranscriptome 3300018529 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_110 - TARA_N000001748 (ERX1782284-ERR1712201) Canada's Michael Smith Genome Sciences Centre 3300018529 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -1.9002 -84.6265 18347936 44836 8 3 44 148 0.0 Metatranscriptome 3300048688 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Metatranscriptome of soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048688 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.3476 -119.2808 103448710 195601 51 0 159 54 Unrestricted 34.66 Metatranscriptome 3300017222 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from North Atlantic Ocean in L1 medium, 22 C, 32 psu salinity and 705 ?mol photons light - Amphidinium carterae CCMP 1314 (MMETSP0259) National Center for Genome Resources 3300017222 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 41.56 -70.583 53693460 59630 12 1 23 1 0.0 Metatranscriptome 3300016932 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in Minimal Essential Medium with 10% fetal bovine serum, 23 C, 35 psu salinity and 182 ?mol photons light - unclassified eukaryote NY0313808BC1 (MMETSP0100_2) National Center for Genome Resources 3300016932 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 40.49657 -74.17591 19166368 22426 3 7 3 4 0.0 Metatranscriptome 3300005210 *Microbiome Permanent Draft Cyanobacterial communities from the Joint Genome Institute, California, USA Cyanobacterial communities from the Joint Genome Institute, California, USA - FECB-27 Light/N+ metaT (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300005210 Metatranscriptome Analysis megahit v. 0.2.0 No Yes mhess@lbl.gov, mhess@ucdavis.edu Matthias Hess No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Cyanobacterial 37.9313884 -122.0239394 22952899 47255 20 3 67 6 Unrestricted 0.0 Metatranscriptome 3300009257 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from Amazon river, Brazil - RCM22 University of Georgia 3300009257 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic River Freshwater Unclassified River water 713640844 2204154 57 43 1241 397 SRX864213 0.0 Metatranscriptome 3300036577 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Omics12_030718 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036577 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 246536561 545776 382 71 813 1313 SRX8834209 Unrestricted 45.99 Metatranscriptome 3300009582 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_9_15_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009582 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment Wetland 41.2239 -82.3039 94924100 202469 603 1452 64669 12788 SRX2525188 Unrestricted 0.0 Metatranscriptome 3300018803 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_098 - TARA_N000001586 (ERX1789721-ERR1719184) Canada's Michael Smith Genome Sciences Centre 3300018803 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -25.8073 -111.7364 194114838 414429 1 38 1 136 0.0 Metatranscriptome 3300007334 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S12 Surf_A metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007334 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 190805156 534077 3873 2256 10438 7284 SRX3196636 Unrestricted 0.0 Metatranscriptome 3300031427 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031427 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 27395261 52911 74 43 140 218 SRX5351936 Unrestricted 21.3 Metatranscriptome 3300012413 *Microbiome Permanent Draft Polar marine prokaryotic and eukaryotic communities from Antarctica during spring seasonal transition Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Arthur Harbor ice station, Antarctica - RNA6.ICE_1m.20151110 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012413 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bowmanjs@ldeo.columbia.edu Jeff Bowman Yes Environmental Aquatic Unclassified Marine Unclassified Polar marine -64.7711 -64.056 416058112 944640 1926 739 13049 21688 SRX3379558 Unrestricted 0.0 Metatranscriptome 3300033543 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_18SEP2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300033543 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.372 417434831 753701 151 128 282 733 SRX7519906 Unrestricted 31.14 Metatranscriptome 3300012726 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES115 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012726 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 184921004 378367 87 211 486 5361 SRX3011046 Unrestricted 0.0 Metatranscriptome 3300008855 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_3069 Massachusetts Institute of Technology 3300008855 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 7231229 24406 19 10 426 788 0.0 Metatranscriptome 3300046069 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-181 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046069 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4963 -64.2287 81968623 201347 807 41 1252 520 Unrestricted 26.55 Metatranscriptome 3300032649 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-3 corn stover (Eukaryote Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032649 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 40.102108 -88.227299 99351490 171274 7 62 25 94 SRX5780731 Unrestricted 0.0 Metatranscriptome 3300030980 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Humus N2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030980 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr; ake.olson@slu.se Francis M. Martin; Ake Olson No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 552885205 1416166 1571 414 3529 1191 SRX3345039 Unrestricted 0.0 Metatranscriptome 3300036655 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp01_R23 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036655 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 255863579 512722 534 86 1207 1184 SRX8835502 Unrestricted 54.07 Metatranscriptome 3300032758 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_17JUL2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032758 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3941 -85.3741 216462826 373240 85 39 106 324 SRX7519757 Unrestricted 58.24 Metatranscriptome 3300018617 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000604 (ERX1782236-ERR1711896) Canada's Michael Smith Genome Sciences Centre 3300018617 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 35.7528 14.2765 63330981 169955 18 8 125 216 0.0 Metatranscriptome 3300023677 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic - CSU5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023677 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 49.0448 13.618 12154877 27173 44 91 1433 753 SRX5243248, SRX4455243 Unrestricted 0.0 Metatranscriptome 3300046676 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - G2-R2-A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046676 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3569 19.0504 78772809 166809 93 62 248 211 Unrestricted 35.27 Metatranscriptome 3300008768 *Microbiome Permanent Draft Microbial communities of mouse gut induced with colitis from Vienna, Austria Microbial communities of mouse gut induced with colitis from Vienna, Austria - 9970_ATCGT University of Vienna 3300008768 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Stomach Digestive system Forestomach Foregut of mice 25722850 81555 165 4 1447 35 SRX326437 0.0 Metatranscriptome 3300035340 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0606U12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035340 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8973 -97.0409 12204516 22450 68 129 1461 348 SRX8237031 Unrestricted 50.14 Metatranscriptome 3300018704 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_082 - TARA_N000001396 (ERX1782253-ERR1711956) Canada's Michael Smith Genome Sciences Centre 3300018704 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -47.2007 -57.9446 114302274 269252 35 12 96 183 0.0 Metatranscriptome 3300032974 *Microbiome Permanent Draft Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - s81 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032974 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes colin.averill@usys.ethz.ch Colin Averill No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 36.0 -78.0 122473513 230894 6 52 105 247 SRX5786936 Unrestricted 54.97 Metatranscriptome 3300009567 *Microbiome Permanent Draft Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea North East Pacific Ocean microbial community - Bloomer_DOMexp_control_12hr_metatranscriptome Massachusetts Institute of Technology 3300009567 Metatranscriptome Analysis Greengenes NAST aligner, Ribosomal Database Project (RDP) naive Bayesian classifier released per JGI data release policy No Yes sarabc@mit.edu Sara Collins No Environmental Aquatic Epipelagic Marine Unclassified open ocean 23.214666 -159.136166 114479793 472752 27669 392 415762 4630 0.0 Metatranscriptome 3300001212 *Microbiome Permanent Draft Estuarine microbial mat communities from Elkhorn Slough, Moss Landing, CA, that are H2-evolving and photosynthetic Estuarine microbial mat communities from Elkhorn Slough, Moss Landing, CA, USA - MR5B Metatranscriptome (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300001212 Metatranscriptome Analysis No Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer Yes 23190731 Environmental Aquatic Intertidal zone Marine Estuary Estuarine 36.8 -121.8 21098105 32589 0 0 2 4 SRX3311452 Unrestricted 0.0 Metatranscriptome 3300052386 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_178 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052386 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 138615107 364118 281 209 1822 1209 Unrestricted 90.77 Metatranscriptome 3300008642 *Microbiome Permanent Draft Microbial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean Microbial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean - CTD-06-45 University of Michigan 3300008642 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vents 11650264 44443 1589 59 9909 625 0.0 Metatranscriptome 3300032890 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_07AUG2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032890 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.3757 96487130 164456 79 91 132 439 SRX7519759 Unrestricted 42.75 Metatranscriptome 3300049155 *Microbiome Permanent Draft Soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA Metatranscriptome of soil microbial communities from LAMPS site, Iowa State University, Ames, IA, USA - 3004_C_N0_5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049155 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes adina@iastate.edu Adina Howe No Environmental Terrestrial Agricultural land Soil Bulk soil Soil 42.013 -93.743 56280317 134091 176 192 894 998 Unrestricted 69.33 Metatranscriptome 3300048520 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_6_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048520 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 43942992 79023 3 1 24 3 Restricted 200.27 Metatranscriptome 3300046188 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_6_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046188 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 91583653 141229 3 0 24 1 Restricted 75.72 Metatranscriptome 3300036291 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen9, Rep 1, Chloramphenicol (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036291 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 22712031 21868 0 0 0 1 SRX8381987, SRX8381986 Unrestricted 0.0 Metatranscriptome 3300023555 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 89R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023555 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 15790805 35252 47 20 547 608 SRX4476295 Unrestricted 52.32 Metatranscriptome 3300030728 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB4_940_32.3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030728 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 75.0007 -150.0027 243744982 489597 206 54 671 1234 SRX5651427 Unrestricted 20.69 Metatranscriptome 3300004960 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI048_10m_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004960 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 28699866 95569 869 872 2194 4263 Unrestricted 0.0 Metatranscriptome 3300049548 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_A_5_drought (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049548 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 37371469 90490 81 59 293 348 Unrestricted 249.2 Metatranscriptome 3300023701 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 47R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023701 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 114268449 231769 101 42 438 917 SRX4474686 Unrestricted 26.5 Metatranscriptome 3300034362 *Microbiome Permanent Draft Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S04 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034362 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes colin.averill@usys.ethz.ch Colin Averill No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 36.0 -78.0 115165632 222968 7 38 227 210 SRX7604396 Unrestricted 149.83 Metatranscriptome 3300041994 *Microbiome Permanent Draft Biological soil crust microbial communities from Mojave Desert, California, United States Metatranscriptome of biological soil crust microbial communities from Mojave Desert, CA, USA - LAC_S1_30hours_MT_FICUS_504271 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300041994 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes erik@olemiss.edu Erik Hom No Environmental Terrestrial Soil crust Soil Biological biological soil crusts 34.1736 -115.3888 50104316 104262 210 156 2360 683 SRX14827058 Unrestricted 48.95 Metatranscriptome 3300031808 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLE3 metaT (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031808 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified Plant litter 49.0431 13.617 36000160 78677 62 473 572 2222 SRX5229520, SRX3937014 Unrestricted 0.0 Metatranscriptome 3300038155 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_N3_C1_D1_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038155 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 75483021 150330 491 1815 5833 5306 SRX9390238 Unrestricted 131.93 Metatranscriptome 3300011055 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 31 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011055 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 45264856 108677 102 184 7912 1100 Unrestricted 0.0 Metatranscriptome 3300019039 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_011 - TARA_X000001286 (ERX1782333-ERR1712137) Canada's Michael Smith Genome Sciences Centre 3300019039 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 41.6686 2.7996 947659960 2293636 337 105 853 1106 0.0 Metatranscriptome 3300008395 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34711 J. Craig Venter Institute (JCVI) 3300008395 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 256525 1217 0 0 7 0 0.0 Metatranscriptome 3300018836 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_066 - TARA_N000000807 (ERX1789715-ERR1719504) Canada's Michael Smith Genome Sciences Centre 3300018836 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -34.8901 18.0459 195310654 488007 10 7 57 256 0.0 Metatranscriptome 3300009263 *Microbiome Permanent Draft Eukaryotic communities of water from Amazon river, Brazil and North Atlantic ocean Eukaryotic communities of water from the North Atlantic ocean - ACM27 University of Georgia 3300009263 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 192808239 510509 2 0 4 2 0.0 Metatranscriptome 3300037030 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp01_R21 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037030 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 350292727 717512 321 75 649 933 SRX8835386 Unrestricted 37.02 Metatranscriptome 3300050365 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T1_4 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050365 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 238614485 403405 20 17 100 83 Unrestricted 94.1 Metatranscriptome 3300010112 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_4_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010112 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 68838259 161965 58 502 14102 4777 Unrestricted 0.0 Metatranscriptome 3300008298 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - PM73.FECAL.14dpc CCME-COLORADO 3300008298 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 15904844 56534 84 2 1365 11 0.0 Metatranscriptome 3300032598 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 corn stover (Eukaryote Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032598 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 40.102108 -88.227299 102644675 163818 9 65 32 122 SRX5780594 Unrestricted 0.0 Metatranscriptome 3300007237 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 9/18/14 A RNA (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007237 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ebyoung@uwm.edu Erica Young, Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 247064562 679146 2735 1757 7093 6358 SRX5628705 Unrestricted 0.0 Metatranscriptome 3300022171 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Metatranscriptome of freshwater sediment microbial communities from pre-fracked creek in Pennsylvania, United States - G-2016_45 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022171 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment sediment 41.3742 -78.0543 115401511 278151 617 1626 13681 8794 SRX4010389 Unrestricted 0.0 Metatranscriptome 3300050390 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T4_2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050390 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 266034126 451994 21 25 139 96 Unrestricted 80.1 Metatranscriptome 3300030886 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030886 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 59.9992 10.7901 15532864 34218 96 116 513 598 SRX5351830 Unrestricted 0.0 Metatranscriptome 3300006719 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP0728 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006719 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -31.83 6.86 122713255 394684 2346 2283 6547 7077 SRX3299152 Unrestricted 0.0 Metatranscriptome 3300037699 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen6, Rep 1, Chloramphenicol (Eukaryote Community Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037699 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 30683606 29159 3 0 5 1 SRX8381193, SRX8381194 Unrestricted 0.0 Metatranscriptome 3300017046 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, no silica, at 16 C, 31 psu salinity and 252 ?mol photons light - Dunaliella tertiolecta CCMP 1320 (MMETSP1128) National Center for Genome Resources 3300017046 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 28703706 29656 1 1 1 1 0.0 Metatranscriptome 3300002692 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_10m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002692 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 41844446 101032 185 91 434 1157 Unrestricted 0.0 Metatranscriptome 3300032492 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red3_28May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032492 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 770501458 1295279 13 5 22 140 SRX6410048 Unrestricted 17.01 Metatranscriptome 3300030847 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030847 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7585 6.3578 698079603 2163242 7673 4509 19004 13178 SRX3351954 Unrestricted 0.0 Metatranscriptome 3300037702 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Metatranscriptome of soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_July_plot5_rep1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037702 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6541 -80.6298 190971127 456560 560 392 5088 2241 SRX9139679 Unrestricted 41.75 Metatranscriptome 3300017087 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater w/o silicate, 18 C, 20 psu salinity and 133 ?mol photons light - Emiliania huxleyi 379 (MMETSP0996) National Center for Genome Resources 3300017087 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 50.1669 -4.2504 23056954 31578 2 2 4 1 0.0 Metatranscriptome 3300006362 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006362 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 15245455 55625 1519 2976 2908 7572 SRX2522140 Unrestricted 0.0 Metatranscriptome 3300002345 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI - H_11min_Aerobic (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002345 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes tmcmahon@cae.wisc.edu, tmcmahon@engr.wisc.edu; tmcmahon@cae.wisc.edu Sludge Phage users, Katherine McMahon; Trina McMahon Yes 20148930, 26555245 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.078418 -89.386482 155596772 279390 17 85 66 213 SRX2554570 Unrestricted 0.0 Metatranscriptome 3300060247 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 61R_AD_T2_R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300060247 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 19101747 50239 57 88 211 516 Unrestricted 30.01 Metatranscriptome 3300041578 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_490 MetaT AgResearch, New Zealand, Mosgeil 3300041578 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 51240455 117196 220 60 1415 100 0.0 Metatranscriptome 3300016743 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071413AT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016743 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 500027595 1097319 295 544 8049 6254 SRX3781459 Unrestricted 0.0 Metatranscriptome 3300031955 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLE1 metaT (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031955 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified Plant litter 49.043 13.6183 43002493 94084 79 420 579 2126 SRX3937012, SRX5229521 Unrestricted 0.0 Metatranscriptome 3300009023 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-29 University of Hawaii 3300009023 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 1933356132 7036768 48 60 414 552 0.0 Metatranscriptome 3300046428 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_15_Fire (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046428 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1864 -81.3559 116532903 273848 62 139 1500 829 Unrestricted 57.05 Metatranscriptome 3300042027 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Metatranscriptome of seawater microbial communities from Western North Atlantic Ocean - Oce3_SurfR (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042027 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Unclassified Marine Unclassified seawater 36.0578 -74.113 154175198 349882 1877 121 2817 2303 SRX14875846 Unrestricted 15.23 Metatranscriptome 3300006359 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1400 MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006359 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 87285631 194757 4066 148 12769 296 SRX2521855 Unrestricted 0.0 Metatranscriptome 3300059676 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_16 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059676 Metatranscriptome Analysis megahit v. 2021-11-18 19:37:58 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 402695636 904897 322 89 1039 501 Unrestricted 0.0 Metatranscriptome 3300007331 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S12 DCM_A metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007331 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 171438945 461375 4524 3361 10451 11192 SRX3196633 Unrestricted 0.0 Metatranscriptome 3300024568 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepA_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024568 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 268574452 532749 48 128 596 1105 SRX4547611 Unrestricted 20.18 Metatranscriptome 3300006228 *Microbiome Permanent Draft Marine sediment microbial communities from different distances from oil contamination, Gulf of Mexico Marine sediment microbial communities, 0.7 km from oil contamination, elevated hydrocarbon, Gulf of Mexico - BC139 Yale Center for Genome Analysis 3300006228 Metatranscriptome Analysis idba_tran released per JGI data release policy No Yes phu@lbl.gov Ping Hu No Environmental Aquatic Oceanic Marine Oil-contaminated sediment marine 28.3 -88.2 26796652 56121 1790 1768 11883 3280 0.0 Metatranscriptome 3300056959 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Southern Region, Iceland - Sphagnum teres 8_TE_ICE (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056959 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.11159 -20.56101 285792214 565181 104 85 452 373 Unrestricted 45.4 Metatranscriptome 3300017148 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, at 22 C, 21 psu salinity and 404 ?mol photons light - Alveolata sp. CCMP3155 (MMETSP0288) National Center for Genome Resources 3300017148 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 37834180 47157 53 14 99 19 0.0 Metatranscriptome 3300052465 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 113-S77Day28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052465 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 111222936 228226 27 2 73 25 Unrestricted 66.43 Metatranscriptome 3300041858 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_355 MetaT AgResearch, New Zealand, Mosgeil 3300041858 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 45211179 101653 537 115 3425 177 0.0 Metatranscriptome 3300008536 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.7.3V73.15dpc CCME-COLORADO 3300008536 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 4300705 17630 31 1 348 10 0.0 Metatranscriptome 3300056962 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Western Region, Iceland - Sphagnum teres H1_TE_ICE (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056962 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 217039583 432510 121 95 407 365 Unrestricted 43.55 Metatranscriptome 3300049129 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_B_0_drought (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049129 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 178812159 411582 321 163 1070 1067 Unrestricted 56.75 Metatranscriptome 3300032822 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_17JUL2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032822 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3951 -85.3736 105318848 186476 87 75 128 407 SRX7519621 Unrestricted 53.89 Metatranscriptome 3300030645 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 32_T1E_2612EL1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030645 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 71053071 95834 1 5 44 293 SRX4646428 Unrestricted 0.0 Metatranscriptome 3300025761 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepB_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300025761 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 120362450 243722 60 94 250 554 SRX4547624 Unrestricted 18.7 Metatranscriptome 3300003296 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 41 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003296 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 24299827 67410 73 164 1233 964 Unrestricted 0.0 Metatranscriptome 3300016759 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in ASW medium, resuspended in ASW w/o nitrate, 20 C, 29 psu salinity and 688 ?mol photons light - Chaetoceros curvisetus (MMETSP0718) National Center for Genome Resources 3300016759 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 32.9 -117.255 5918753 8813 8 1 13 1 0.0 Metatranscriptome 3300043826 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA75a (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043826 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Unclassified Soil Unclassified soil 35.7877 -78.6442 76164536 157946 261 356 2413 2485 Unrestricted 42.62 Metatranscriptome 3300012745 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES017 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012745 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 49396025 104647 222 66 3423 1906 SRX3526965 Unrestricted 0.0 Metatranscriptome 3300047437 *Microbiome Permanent Draft Enriched green algae-associated microbial communities from Montana State University, Bozeman, MT, USA Metatranscriptome of enriched green algae-associated microbial communities from Montana State University, Bozeman, MT, USA - SLA04-IM-Rep1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047437 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes robin_g@montana.edu Robin Gerlach No Host-associated Algae Unclassified Green algae Unclassified green algae 45.6655 -111.0466 51907963 99398 5 33 59 142 Unrestricted 957.03 Metatranscriptome 3300050693 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae culture inoculated with mixed bacterial community from LLNL, Livermore, California, USA - f19_d5_A_S28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050693 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 28568883 39037 3 0 5 14 Restricted 190.38 Metatranscriptome 3300003508 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS820_Marshmallow_RNA 3300003508 Metatranscriptome Analysis CLC Genomics workbench released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.934 -130.013428 5801347 17568 62 23 264 46 0.0 Metatranscriptome 3300035625 *Microbiome Permanent Draft Sediment microbial communities from Lake Washington near Medina, WA, United States Metatranscriptome of methane-enriched sediment microbial communities from Lake Washington, WA, United States - LO-NA-2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035625 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment sediment 47.6215 -122.2558 26229210 41211 0 0 4 0 SRX8380047 Unrestricted 580.2 Metatranscriptome 3300011029 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 32 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011029 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 18611347 44164 70 134 4716 632 Unrestricted 0.0 Metatranscriptome 3300037732 *Microbiome Permanent Draft Rumen fluid microbial communities from dairy cows in UC Davis, California, USA Metatranscriptome of rumen microbial communities from dairy cows in UC Davis, California, USA - UCD_Rumen_Seaweed_2634 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300037732 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bmroque@ucdavis.edu Breanna Roque No Host-associated Mammals Stomach Digestive system Rumen fluid rumen fluid 38.5368 -121.7595 61725372 131584 1 29 167 106 Unrestricted 0.0 Metatranscriptome 3300016762 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071413CT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016762 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 334376176 735764 117 336 1574 3012 SRX3781430 Unrestricted 0.0 Metatranscriptome 3300030784 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 6A (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030784 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 344588054 1032393 8804 1030 24543 4441 SRX2752861 Unrestricted 0.0 Metatranscriptome 3300046124 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-169 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046124 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4841 -64.2273 41581485 102470 577 35 944 337 Unrestricted 20.65 Metatranscriptome 3300032914 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_07AUG2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032914 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3941 -85.3741 247789407 454054 146 86 202 513 SRX7519783 Unrestricted 53.45 Metatranscriptome 3300041518 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Bulk soil microbial community from Lincoln, Canterbury, New Zealand - BS17_5 MetaT AgResearch, New Zealand, Mosgeil 3300041518 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Environmental Terrestrial Unclassified Soil Agricultural land Dairy farm pasture soil -43.648506 172.343549 9388077 16089 454 432 1861 1199 0.0 Metatranscriptome 3300049463 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_11 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300049463 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 380381690 851067 418 132 1347 578 Unrestricted 34.82 Metatranscriptome 3300030623 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE043SO (Eukaryote Community Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300030623 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2937 -71.1771 383696876 860465 75 82 1707 519 SRX4391328, SRX4391329 Unrestricted 0.0 Metatranscriptome 3300011283 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S14 170_B metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011283 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 19965067 48074 18 18 3255 721 SRX3787163 Unrestricted 0.0 Metatranscriptome 3300046565 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - P1-R3-A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046565 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.355 19.0438 86569492 195857 106 186 397 867 Unrestricted 27.5 Metatranscriptome 3300018734 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_100 - TARA_N000001612 (ERX1789403-ERR1719254) Canada's Michael Smith Genome Sciences Centre 3300018734 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -12.9488 -96.0293 121415208 346988 8 10 51 127 0.0 Metatranscriptome 3300018961 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_152 - TARA_N000002783 (ERX1789414-ERR1719458) Canada's Michael Smith Genome Sciences Centre 3300018961 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 43.7421 -16.9002 567780745 1105609 4 17 10 151 0.0 Metatranscriptome 3300008663 *Microbiome Permanent Draft Microbial communities from the microbial mats in Mushroom Springs at Yellowstone National Park, USA Microbial communities from the microbial mats in Mushroom Springs at Yellowstone National Park, USA - time_1_00 Pennsylvania State University 3300008663 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Thermal springs 235641 593 0 0 0 0 SRX233569 0.0 Metatranscriptome 3300022645 *Microbiome Permanent Draft Anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States Metatranscriptome of anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States - LAC_MetaT_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022645 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes alvarez@ce.berkeley.edu Lisa Alvarez-Cohen No Engineered Bioreactor Unclassified Anaerobic Unclassified anaerobic bioreactor biomass 37.8719 -122.2585 135651365 463773 11 22 1439 165 SRX4391780 Unrestricted 0.0 Metatranscriptome 3300060819 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of lake water microbial communities from Sandhills, Nebraska, United States - NSL_Border_2018 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300060819 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.79185 -102.53404 58332039 131259 11 17 163 38 Unrestricted 0.0 Metatranscriptome 3300041905 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_442 MetaT_extra_run AgResearch, New Zealand, Mosgeil 3300041905 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 8453105 17394 88 52 710 130 0.0 Metatranscriptome 3300052923 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_192 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052923 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 175762503 455234 313 182 1257 1203 Unrestricted 79.02 Metatranscriptome 3300046590 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - G1-R1-B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046590 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.048 146589866 314684 125 77 489 291 Unrestricted 30.5 Metatranscriptome 3300024860 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepA_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024860 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 223176115 454674 87 316 1067 2167 SRX4547768 Unrestricted 25.65 Metatranscriptome 3300031125 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_153 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031125 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92057636 -106.94874802 51686038 117987 450 415 3060 1991 SRX8133419 Unrestricted 25.77 Metatranscriptome 3300019009 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_067 - TARA_N000000756 (ERX1782233-ERR1711966) Canada's Michael Smith Genome Sciences Centre 3300019009 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -32.2401 17.7103 427427364 1064359 289 26 617 577 0.0 Metatranscriptome 3300018806 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_068 - TARA_N000000722 (ERX1789621-ERR1719484) Canada's Michael Smith Genome Sciences Centre 3300018806 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -31.0266 4.665 179521409 423116 2 2 8 39 0.0 Metatranscriptome 3300018795 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_066 - TARA_N000000791 (ERX1782279-ERR1712192) Canada's Michael Smith Genome Sciences Centre 3300018795 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -34.8901 18.0459 172139503 430102 19 10 76 106 0.0 Metatranscriptome 3300012416 *Microbiome Permanent Draft Polar marine prokaryotic and eukaryotic communities from Antarctica during spring seasonal transition Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 24hr light incubation - RNA9.A_24.20151111 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012416 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bowmanjs@ldeo.columbia.edu Jeff Bowman Yes Environmental Aquatic Unclassified Marine Unclassified Polar marine -64.775 -64.053 515738863 1086550 1340 543 6729 11646 SRX3379559 Unrestricted 0.0 Metatranscriptome 3300054642 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_CO_0C2R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300054642 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0707 10.44455 96677916 238594 370 280 1018 1324 Unrestricted 59.99 Metatranscriptome 3300008689 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-58 University of Hawaii 3300008689 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 1420820 2597 2 2 168 28 0.0 Metatranscriptome 3300052892 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 126-Pos ControlDay63 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052892 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 133924987 285995 24 11 79 31 Unrestricted 73.34 Metatranscriptome 3300010172 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_2000_B MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010172 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 6253711 17095 1274 2 4452 2 SRX2521683, SRX2521684 Unrestricted 0.0 Metatranscriptome 3300018760 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Eukaryotic communities of water from different depths collected during the Tara Oceans expedition - TARA_N000000920 Genoscope 3300018760 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ocean water 81096459 348599 76 132 214 1592 ERX1086439 0.0 Metatranscriptome 3300012723 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES129 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012723 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 174219470 361271 115 163 868 3783 SRX3011103 Unrestricted 0.0 Metatranscriptome 3300007575 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C_top_diel_T=7 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007575 Metatranscriptome Analysis megahit v. 0.2.0 No Yes binskeep@montana.edu, binskeep@montana.edu; jim.fredrickson@pnnl.gov William Inskeep, William P. Inskeep; Jim Fredrickson No Environmental Aquatic Unclassified Thermal springs Unclassified Microbial mats 44.7219 -110.7021 15189778 42778 5640 36 7105 83 SRX5333051 Unrestricted 0.0 Metatranscriptome 3300016841 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in L1 medium w/o silica, 20 C, 35 psu salinity and 334 ?mol photons light - Ostreococcus mediterraneus clade D RCC 2572 (MMETSP0929) National Center for Genome Resources 3300016841 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 3.145 42.488 14439272 12870 22 1 26 2 0.0 Metatranscriptome 3300031717 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from Antarctic Ocean - PS103-6 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031717 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified marine -60.9995 -0.0007 923160879 1624733 15 1 23 100 SRX5356515 Unrestricted 15.33 Metatranscriptome 3300010854 *Microbiome Permanent Draft Forest soil eukaryotic communities from Alaska, USA, for a soil warming experiment in a boreal forest Boreal forest soil eukaryotic communities from Alaska, USA - W4-3 Metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010854 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes treseder@uci.edu Kathleen Treseder No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Boreal forest soil 63.883 -145.733 63178670 141060 262 486 13038 5452 SRX3007312 Unrestricted 0.0 Metatranscriptome 3300028187 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0689-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028187 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 344568182 554895 23 14 26 57 SRX5253819 Unrestricted 76.92 Metatranscriptome 3300029654 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Cys1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029654 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 33355551 64550 9 12 306 52 SRX5356121 Unrestricted 82.43 Metatranscriptome 3300016902 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in 0.2u filtered seawater with ES enrichments, GLUTAMATE, 15 C, 33 psu salinity and 98 ?mol photons light - Pseudo-nitzschia australis 10249 10 AB (MMETSP0142_2) National Center for Genome Resources 3300016902 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 36.60369 -121.88927 29552822 29416 4 5 11 8 0.0 Metatranscriptome 3300017025 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in ESAW medium with 100 uM nitrogen, at 25 C, 20 psu salinity and 524 ?mol photons light - Chattonella subsalsa CCMP 2191 (MMETSP0950) National Center for Genome Resources 3300017025 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 31788354 37029 15 1 24 1 0.0 Metatranscriptome 3300012405 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_24_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012405 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 203218687 490628 87 664 5396 6144 Unrestricted 0.0 Metatranscriptome 3300004517 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 97_LOW12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004517 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 14673522 32392 63 26 290 39 SRX2780166 Unrestricted 0.0 Metatranscriptome 3300059635 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_28 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059635 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 237354791 555224 541 155 1823 881 Unrestricted 0.0 Metatranscriptome 3300019217 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA4_MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019217 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 37.43 138.83 179927029 361686 54 99 10796 572 SRX4809116 Unrestricted 0.0 Metatranscriptome 3300052383 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_175 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052383 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 58048558 153412 101 115 672 689 Unrestricted 140.77 Metatranscriptome 3300038288 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_OW2_C1_D1_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038288 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 77746796 146540 435 2328 5055 6119 SRX9391584 Unrestricted 140.23 Metatranscriptome 3300028159 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0667-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028159 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 149007912 269029 18 72 16 89 SRX5253460 Unrestricted 100.78 Metatranscriptome 3300002588 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS903_30_12L 3300002588 Metatranscriptome Analysis released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 1855290 4608 150 3 266 14 0.0 Metatranscriptome 3300003742 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_80_13L The Marine Biological Laboratory 3300003742 Metatranscriptome Analysis CLC Genomics WB7 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 1474619 4825 25 2 52 6 0.0 Metatranscriptome 3300045458 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P15SSC1_190915_i (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300045458 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 81820119 212639 86 233 1372 1272 SRX20650858 Unrestricted 122.86 Metatranscriptome 3300004629 *Microbiome Permanent Draft Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, for analyzing deforestation at different spatial scales Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A01 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004629 Metatranscriptome Analysis megahit v. 0.2.0 No Yes nusslein@microbio.umass.edu Nusslein, Klaus, Klaus Nusslein No Environmental Terrestrial Tropical forest Soil Unclassified Tropical rainforest soil -10.0 -62.0 372890329 1359748 10225 2729 34431 7330 SRX2518432 Unrestricted 0.0 Metatranscriptome 3300052369 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_145 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052369 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 25979786 70302 83 97 630 609 Unrestricted 456.6 Metatranscriptome 3300004294 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 33 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004294 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 57861570 202452 4096 1821 13889 3788 Unrestricted 0.0 Metatranscriptome 3300017368 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Gulf of Mexico in L1 medium, 22 C, 32 psu salinity and 686 ?mol photons light - Karenia brevis CCMP 2229 (MMETSP0029) National Center for Genome Resources 3300017368 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 27.0171 -82.4763 102074608 135844 1 1 6 2 0.0 Metatranscriptome 3300007304 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom. Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300007304 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sgtringe@lbl.gov, rmmckay@bgsu.edu Susannah Tringe, Robert M. McKay No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.69957 -83.2941 370574081 922551 2126 10318 4698 22958 SRX3195505 Unrestricted 0.0 Metatranscriptome 3300046255 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_2_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046255 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 42583297 77953 10 39 154 211 Restricted 179.32 Metatranscriptome 3300041916 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaT_extra_run AgResearch, New Zealand, Mosgeil 3300041916 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Unclassified Roots Unclassified White clover root -43.648506 172.343549 64108356 101356 488 862 1762 1140 0.0 Metatranscriptome 3300031389 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_L6_16mM_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031389 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 13903341 22858 0 3 0 3 SRX5783481 Unrestricted 40.19 Metatranscriptome 3300018833 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_148 - TARA_N000002119 (ERX1789510-ERR1719289) Canada's Michael Smith Genome Sciences Centre 3300018833 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 31.7432 -64.1967 236863346 485879 0 53 1 159 0.0 Metatranscriptome 3300046310 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_5_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046310 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 41946349 73973 1 0 28 1 Restricted 141.95 Metatranscriptome 3300016787 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071411AT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016787 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 443720976 1000949 229 317 4021 4453 SRX3781460 Unrestricted 0.0 Metatranscriptome 3300023704 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 35R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023704 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 123849599 265539 107 57 615 1162 SRX4474672 Unrestricted 29.37 Metatranscriptome 3300017265 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Gulf of Mexico in f/2 medium with silicate, 20 C, 21 psu salinity and 315 ?mol photons light - Stephanopyxis turris CCMP 815 (MMETSP0794_2) National Center for Genome Resources 3300017265 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 29.4666 -86.121 31700783 45349 21 15 39 26 0.0 Metatranscriptome 3300002880 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI074_150m_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002880 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 33143928 72585 33 26 430 291 Unrestricted 0.0 Metatranscriptome 3300000088 *Microbiome Draft Blue grama grass rhizosphere eukaryotic and microbial communities from Sevilleta Long Term Ecological Research site, New Mexico, US Blue grama grass rhizosphere microbial communities from Sevilleta, New Mexico, USA - RHZ soil Unburned sample replicate 2 DOE Joint Genome Institute (JGI) 3300000088 Metatranscriptome Analysis No Yes ajpowel@gmail.com Amy Powell Yes 26279186 Host-associated Plants Rhizosphere Roots Soil Blue grama grass rhizosphere 34.3348 -106.631 0 0 0 0 0 0 0.0 Metatranscriptome 3300006281 *Microbiome Permanent Draft Prairie soil microbial communities from Kansas, USA, after rainfall Prairie soil microbial communities from Kansas, USA, after rainfall - K16 Oregon State University 3300006281 Metatranscriptome Analysis VELVET 1.2.10, combine 23, 27, 31 released per JGI data release policy No Yes lzeglin@ksu.edu Lydia Zeglin No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.1038 -96.6133 3040782 17913 12 0 24 2 0.0 Metatranscriptome 3300018677 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_124 - TARA_N000002043 (ERX1789362-ERR1719365) Canada's Michael Smith Genome Sciences Centre 3300018677 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -9.1508 -140.4969 111920562 254701 0 8 2 45 0.0 Metatranscriptome 3300050707 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae culture inoculated with mixed bacterial community from LLNL, Livermore, California, USA - f23_d7_A_S48 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050707 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 32207763 39960 4 0 6 3 Restricted 231.49 Metatranscriptome 3300013048 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - RNA 5th pass 37_C BE-Lig MG (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013048 Metatranscriptome Analysis megahit v. 1.0.6 No Yes jmgladden@lbl.gov John Gladden No Environmental, Engineered Terrestrial, Solid waste Composting Soil, Mixed feedstock Commercial compost compost 37.83 -122.29 33206756 52860 11 47 96 1943 SRX3902050 Unrestricted 0.0 Metatranscriptome 3300030883 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_31MAY2016_LR2 (Metagenome Metatranscriptome) (pilot) DOE Joint Genome Institute (JGI) 3300030883 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Unclassified Phyllosphere Unclassified phyllosphere 42.39 -85.37 8459405 15672 5 1 3 12 SRX7077611, SRX7077612 Unrestricted 0.0 Metatranscriptome 3300017290 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, no silica, at 16 C, 34 psu salinity and 755 ?mol photons light - Pleurochrysis carterae CCMP 645 (MMETSP1136) National Center for Genome Resources 3300017290 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 37653660 50369 6 2 10 1 0.0 Metatranscriptome 3300038732 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil microbial communities from Duke University greenhouse, North Carolina, United States - H85 wSuillus Nitrogen (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038732 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Greenhouse Soil Unclassified soil 36.0 -78.0 25259746 56691 11 43 113 289 SRX8863037 Unrestricted 27.02 Metatranscriptome 3300018555 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_100 - TARA_N000001618 (ERX1809464-ERR1739837) Canada's Michael Smith Genome Sciences Centre 3300018555 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -12.9119 -96.1101 14124431 34582 3 3 9 54 0.0 Metatranscriptome 3300019120 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_092 - TARA_N000001303 (ERX1789686-ERR1719360) Canada's Michael Smith Genome Sciences Centre 3300019120 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -33.6771 -71.9719 164707727 397004 2 14 14 130 0.0 Metatranscriptome 3300041398 *Microbiome Permanent Draft Diffuse flow microbial communities from hydrothermal vent near Loihi Seamount, Hawaii, USA Diffuse flow microbial community from hydrothermal vent near Loihi Seamount, Hawaii, USA - MH5513C5 Marine Biological Laboratory 3300041398 Metatranscriptome Analysis IDBA-UD v. 1.1.3 released by JGI data releasing policy No Yes asmith@simons-rock.edu Amy Smith No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse Flow 19.42 -155.28 635.0 1787356 2925 0 0 0 0 0.0 Metatranscriptome 3300024487 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepB_0h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024487 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 119478862 255606 66 150 1226 1347 SRX4547600 Unrestricted 28.75 Metatranscriptome 3300046605 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-87 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046605 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4413 -64.1645 85033171 208996 843 23 1319 362 Unrestricted 18.3 Metatranscriptome 3300017043 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium, 14 C, 21 psu salinity and 445 ?mol photons light - Licmophora paradoxa CCMP 2313 (MMETSP1360) National Center for Genome Resources 3300017043 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 42.41915 -70.91349 26772943 38083 6 1 18 2 0.0 Metatranscriptome 3300008938 *Microbiome Permanent Draft Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica - 4A J. Craig Venter Institute (JCVI) 3300008938 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ice edge, McMurdo Sound, Antarctica -77.36 164.28 274631769 742090 34 10 111 109 0.0 Metatranscriptome 3300022512 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022512 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 101170076 243984 136 399 4267 2937 SRX4408564 Unrestricted 0.0 Metatranscriptome 3300018701 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_125 - TARA_N000002017 (ERX1789579-ERR1719459) Canada's Michael Smith Genome Sciences Centre 3300018701 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -8.9111 -142.5571 99312458 265170 6 21 28 187 0.0 Metatranscriptome 3300030869 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E7_S_0.2 metaT (Eukaryote Community Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300030869 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 90416599 206687 8 3 124 137 SRX3195628, SRX3341779 Unrestricted 0.0 Metatranscriptome 3300005638 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1700(2)_B MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005638 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 145663414 368441 3439 22 9953 119 SRX2521840 Unrestricted 0.0 Metatranscriptome 3300004764 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004764 Metatranscriptome Analysis megahit v. 0.2.0 No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 157670675 491143 2501 891 5590 4705 SRX2518463 Unrestricted 0.0 Metatranscriptome 3300056987 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Frasne, France - Sphagnum fallax 3OTC_SF_FR (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056987 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 194618019 424472 192 107 424 516 Unrestricted 47.87 Metatranscriptome 3300004338 *Microbiome Permanent Draft Metatranscriptomics studies in sediment microbial communities from the mangroves in Sao Paulo, Brazil Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC1A 3300004338 Metatranscriptome Analysis IDBA released by JGI data releasing policy No Yes luc.g.cabral@gmail.com Luc?lia Cabral, Lucelia Cabral No Environmental Aquatic Intertidal zone Marine Mangrove sediment Mangrove sediment -23.8553 -46.1394 37386752 112703 1951 1140 11920 3758 0.0 Metatranscriptome 3300031048 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 13 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031048 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr; ake.olson@slu.se Francis M. Martin; Ake Olson No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 177327234 391828 78 39 146 84 SRX3345027 Unrestricted 0.0 Metatranscriptome 3300026408 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0913-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026408 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 111126044 182484 20 4 31 34 SRX4796176 Unrestricted 59.76 Metatranscriptome 3300016746 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101401AT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016746 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 254682735 580952 215 332 4937 4637 SRX3780733 Unrestricted 0.0 Metatranscriptome 3300030852 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB2 Emin (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030852 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7184 6.3471 575593551 1461167 5268 1062 10684 2396 SRX3350659 Unrestricted 0.0 Metatranscriptome 3300047592 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_7_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047592 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 65632090 103332 1 0 25 5 Restricted 144.52 Metatranscriptome 3300008829 *Microbiome Permanent Draft Microbial communities of mouse gut induced with colitis from Vienna, Austria Microbial communities of mouse gut induced with colitis from Vienna, Austria - 9964_ACGTT University of Vienna 3300008829 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Stomach Digestive system Forestomach Foregut of mice 34686405 118038 316 1 1893 38 SRX326431 0.0 Metatranscriptome 3300010907 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS5_30_TP2_12L Marine Biological Laboratory 3300010907 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933 -130.014 1331412 3253 8 5 67 10 0.0 Metatranscriptome 3300013045 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013045 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil corn rhizosphere 42.3948 -85.3738 18296762 44966 89 446 9436 3644 SRX5335938, SRX5335937 Unrestricted 0.0 Metatranscriptome 3300018558 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS676_0p8 J. Craig Venter Institute (JCVI) 3300018558 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 62.09708 18.5427 10286015 39068 8 9 214 261 0.0 Metatranscriptome 3300008994 *Microbiome Permanent Draft Microbial communities of red sea marine sponge, Stylissa carteri from the coast of Thuwal, Saudi Arabia Microbial communities of red sea marine sponge, Stylissa carteri from the coast of Thuwal, Saudi Arabia - rep 1 University of Wuerzburg 3300008994 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Porifera Unclassified Unclassified Unclassified marine sponge 22.23 39.03 131058234 299299 67 23 2139 684 0.0 Metatranscriptome 3300008913 *Microbiome Permanent Draft Eukaryotic communities of quiescent and activated human skeletal muscle stem cells from California, USA Eukaryotic communities of quiescent and activated human skeletal muscle stem cells from California, USA - p38 inhibitor 1 Stanford University 3300008913 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human HuSC Cell culture Unclassified Human skeletal muscle 37.43 -122.17 30596376 69837 0 3 6 7 ERX1052325 0.0 Metatranscriptome 3300018611 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_102 - TARA_N000001660 (ERX1782173-ERR1712095) Canada's Michael Smith Genome Sciences Centre 3300018611 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -5.2686 -85.248 69371930 155991 2 10 7 56 0.0 Metatranscriptome 3300018510 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_122 - TARA_N000001941 (ERX1782292-ERR1712069) Canada's Michael Smith Genome Sciences Centre 3300018510 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -9.006 -139.206 3710141 9335 1 6 7 57 0.0 Metatranscriptome 3300046608 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-97 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046608 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4402 -64.1748 93456178 220227 907 44 1515 650 Unrestricted 14.61 Metatranscriptome 3300016869 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Caribbean Sea in L1 medium with seawater, 24 C, 33 psu salinity and 541 ?mol photons light - Synchroma pusillum CCMP 3072 (MMETSP1452) National Center for Genome Resources 3300016869 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 11.335 -74.0521 11803934 16692 46 13 54 25 0.0 Metatranscriptome 3300012687 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES032 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012687 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 118871719 226706 75 82 314 2410 SRX3009962 Unrestricted 0.0 Metatranscriptome 3300017268 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 15 C, 32 psu salinity and 608 ?mol photons light - Prymnesium polylepis CCMP 1757 (MMETSP0143) National Center for Genome Resources 3300017268 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 59019327 80933 3 3 5 12 0.0 Metatranscriptome 3300031421 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031421 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040592 -106.9484972 633983272 1507557 214 296 2057 1523 SRX8134564 Unrestricted 18.6 Metatranscriptome 3300008870 *Microbiome Permanent Draft Microbial communities from dairy cow rumen, for metatranscriptome studies Microbial communities from dairy cow rumen, for metatranscriptome studies - 6180_rapeseed oil diet Aarhus University 3300008870 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Stomach Digestive system Rumen Holstein breed cow rumen 19947985 95478 434 72 6154 224 SRX196414 0.0 Metatranscriptome 3300016852 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in enriched f/2 medium with seawater, 16 C, 35 psu salinity and 90 ?mol photons light - Pseudo-nitzschia fraudulenta WWA7 (MMETSP0850) National Center for Genome Resources 3300016852 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 34.0847 -119.05 22764003 25702 57 14 82 15 0.0 Metatranscriptome 3300046127 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-192 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046127 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4199 -64.1151 129067761 307937 540 21 934 338 Unrestricted 25.54 Metatranscriptome 3300026405 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepA_0h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026405 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 81319300 173331 120 102 522 729 SRX4796909 Unrestricted 29.66 Metatranscriptome 3300032917 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_15MAY2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032917 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.372 50219000 86016 8 19 35 64 SRX7519520 Unrestricted 47.72 Metatranscriptome 3300032729 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Plim7_26May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032729 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 731131122 1232499 18 9 32 161 SRX6411384 Unrestricted 0.0 Metatranscriptome 3300023693 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 29R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023693 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 69174371 149934 78 30 411 724 SRX4474497 Unrestricted 29.64 Metatranscriptome 3300030787 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E6_S_5 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030787 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 505674486 1732572 139 163 229 382 SRX3341607 Unrestricted 0.0 Metatranscriptome 3300031263 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031263 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 19566168 38290 55 26 80 199 SRX7109715 Unrestricted 43.98 Metatranscriptome 3300018949 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_135 - TARA_N000002172 (ERX1782262-ERR1712034) Canada's Michael Smith Genome Sciences Centre 3300018949 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 33.0339 -121.8782 335859292 1017784 18 33 70 217 0.0 Metatranscriptome 3300034381 *Microbiome Permanent Draft FORHOT Natural soil warming experiment in Iceland Soil microbial communities from grassland in Hveragerdi, Iceland - GN5-A University of Vienna 3300034381 Metatranscriptome Analysis rnaSPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes craig.herbold@microbial-ecology.net Craig Herbold No Environmental Terrestrial Unclassified Soil Grasslands Soil 64.025 -21.205 1885989509 7620113 283977 31879 938854 51539 0.0 Metatranscriptome 3300008935 *Microbiome Permanent Draft Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica - 3A J. Craig Venter Institute (JCVI) 3300008935 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ice edge, McMurdo Sound, Antarctica -77.36 164.28 154153459 447356 20 7 50 60 0.0 Metatranscriptome 3300035580 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - 16M (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035580 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4316 16.6833 209645881 430512 289 620 2688 2412 SRX8209501 Unrestricted 31.85 Metatranscriptome 3300019179 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZI2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019179 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 49.044 13.617 16129232 34726 13 249 542 1422 SRX3937186 Unrestricted 0.0 Metatranscriptome 3300047434 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81958630-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047434 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 289660160 723048 380 275 2033 1611 Unrestricted 22.51 Metatranscriptome 3300016883 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine sediment eukaryotic communities from Great South Bay, New York in artificial seawater with 0.125% Artemia detritus and 0.8% agar, 23 C, 25 psu salinity and 171 ?mol photons light - Aplanochytrium sp. PBS07 (MMETSP0956) National Center for Genome Resources 3300016883 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Sediment marine sediment 40.93 -72.5 14808854 17326 17 10 35 15 0.0 Metatranscriptome 3300005635 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling - Hofmockel_1000120-3 ISU MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005635 Metatranscriptome Analysis megahit v. 0.2.0 No Yes khof@iastate.edu, kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Agricultural land Soil Unclassified Enriched soil aggregate 42.0266187 -93.6486594 48460455 113667 225 179 1091 256 SRX3195434 Unrestricted 0.0 Metatranscriptome 3300041768 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_138 MetaT AgResearch, New Zealand, Mosgeil 3300041768 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 33449703 70231 134 58 1127 223 0.0 Metatranscriptome 3300031045 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T35 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031045 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 49441760 89284 59 25 133 189 SRX5352963 Unrestricted 15.36 Metatranscriptome 3300022599 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL C2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022599 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes momedinamunoz@gmail.com Medina Medina No Host-associated Invertebrates Coral Cnidaria Unclassified coral 9.1956 -82.1254 173676218 238482 59 117 268 1219 SRX3998533 Unrestricted 0.0 Metatranscriptome 3300008578 *Microbiome Permanent Draft Microbial communities of corn and soybean rhizosphere soil from Ohio, USA Microbial communities of corn rhizosphere soil from Ohio, USA - Corn_Powermax_1a Auburn University 3300008578 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Plants Rhizosphere Roots Soil Rhisosphere soil 7133552 27602 845 278 17483 2082 SRX1078296 0.0 Metatranscriptome 3300048846 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Metatranscriptome of soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR24 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048846 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.3476 -119.2808 26634429 34484 5 0 6 0 Unrestricted 64.28 Metatranscriptome 3300038285 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_N3_C1_D3_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038285 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 87180839 190954 337 597 4903 1510 SRX9391055 Unrestricted 177.27 Metatranscriptome 3300004571 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 32_HOW6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004571 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 26661363 62663 428 414 1383 819 SRX2779923 Unrestricted 0.0 Metatranscriptome 3300002585 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS903_55_13L 3300002585 Metatranscriptome Analysis released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 873177 3044 28 3 71 5 0.0 Metatranscriptome 3300018737 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_125 - TARA_N000002025 (ERX1789417-ERR1719385) Canada's Michael Smith Genome Sciences Centre 3300018737 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.892 -142.6358 155931936 350134 3 21 8 122 0.0 Metatranscriptome 3300017028 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater w/o silicate, 18 C, 20 psu salinity and 143 ?mol photons light - Emiliania huxleyi 374 (MMETSP1008) National Center for Genome Resources 3300017028 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 42.5 -69.0 20901272 28931 2 1 2 2 0.0 Metatranscriptome 3300046801 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Metatranscriptome of soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046801 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.3476 -119.2808 80391044 145164 69 9 152 64 Unrestricted 61.53 Metatranscriptome 3300018818 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Eukaryotic communities of water from different depths collected during the Tara Oceans expedition - TARA_N000000616 (ERX1086442-ERR1007415) Genoscope 3300018818 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ocean water 102124996 458937 77 62 216 836 ERX1782448, ERX1086442, ERX1782105 0.0 Metatranscriptome 3300021227 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from nest from French Guiana - 18-5 mRNA SA University of Luxembourg 3300021227 Metatranscriptome Analysis CLC Genomics Workbench Version 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 5.06224 -53.047407 53562497 132104 0 5 7 13 0.0 Metatranscriptome 3300028266 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028266 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 124262465 265958 112 104 455 777 SRX5245485 Unrestricted 23.87 Metatranscriptome 3300019271 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101411XT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019271 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 333840134 720756 151 285 1403 2089 SRX3920992 Unrestricted 0.0 Metatranscriptome 3300025749 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepC_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300025749 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 114460942 246693 44 49 188 422 SRX4547632 Unrestricted 44.09 Metatranscriptome 3300012408 *Microbiome Permanent Draft Polar marine prokaryotic and eukaryotic communities from Antarctica during spring seasonal transition Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 192hr light incubation - RNA23.A_192.20151118 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012408 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bowmanjs@ldeo.columbia.edu Jeff Bowman Yes Environmental Aquatic Unclassified Marine Unclassified Polar marine -64.775 -64.053 268032872 530262 261 107 2954 8748 SRX3379822 Unrestricted 0.0 Metatranscriptome 3300018850 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_098 - TARA_N000001578 (ERX1782388-ERR1711941) Canada's Michael Smith Genome Sciences Centre 3300018850 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -25.8051 -111.7202 186043800 497085 59 63 308 467 0.0 Metatranscriptome 3300037056 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp01_R24 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037056 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 345213613 682393 407 111 883 1372 SRX8835504 Unrestricted 60.64 Metatranscriptome 3300046044 *Microbiome Permanent Draft Sediment microbial communities from various environments and locations in Europe Metatranscriptome of sediment microbial communities from Baltic Sea, Sweden - H5D5S (Metagenome Metatranscriptome) (IMG v5.0) DOE Joint Genome Institute (JGI) 3300046044 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes o.eyice@qmul.ac.uk Ozge Eyice No Environmental Aquatic Sediment Marine Unclassified Sediment 59.0386 17.7277 407215640 912574 40 38 1505 234 SRX20998534, SRX20998533 Unrestricted 0.0 Metatranscriptome 3300029657 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_His2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029657 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 40679629 79221 7 11 199 44 SRX5356170 Unrestricted 68.96 Metatranscriptome 3300028184 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0947-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028184 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 292111087 508674 36 64 34 76 SRX5244916 Unrestricted 61.83 Metatranscriptome 3300017365 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Ross Sea in marine media K with soil extract, 1 C, 36 psu salinity and 367 ?mol photons light - Geminigera sp. Caron Lab Isolate (MMETSP1102) National Center for Genome Resources 3300017365 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 51842222 78578 2 8 2 11 0.0 Metatranscriptome 3300010857 *Microbiome Permanent Draft Forest soil eukaryotic communities from Alaska, USA, for a soil warming experiment in a boreal forest Boreal forest soil eukaryotic communities from Alaska, USA - W1-3 Metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010857 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes treseder@uci.edu Kathleen Treseder No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Boreal forest soil 63.883 -145.733 134214084 311967 400 648 29979 6862 SRX3007280 Unrestricted 0.0 Metatranscriptome 3300031023 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil TCEFA (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031023 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr; dcullen@wisc.edu Francis M. Martin; Daniel Cullen No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 46.9233 -110.871944 558772385 1657041 12819 649 20296 1434 SRX3342743 Unrestricted 0.0 Metatranscriptome 3300046210 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_2_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046210 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 72895912 108977 4 0 25 0 Restricted 115.81 Metatranscriptome 3300030902 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030902 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92029456 -106.94875775 255106051 585039 575 465 2710 2279 SRX8134995 Unrestricted 26.42 Metatranscriptome 3300046258 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_2_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046258 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 61621065 104264 13 49 192 208 Restricted 169.89 Metatranscriptome 3300031714 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen9, Rep 2, Chloramphenicol (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031714 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 31670592 26472 0 1 0 0 SRX5360134 Unrestricted 481.45 Metatranscriptome 3300020099 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um, replicate b, metaT Georgia Genomics Facility 3300020099 Metatranscriptome Analysis Trinity 2.06 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 20305727 54792 3901 238 8776 546 0.0 Metatranscriptome 3300018696 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_076 - TARA_N000000864 (ERX1782143-ERR1711870) Canada's Michael Smith Genome Sciences Centre 3300018696 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -20.9724 -35.2724 110515531 291361 131 28 448 357 0.0 Metatranscriptome 3300006381 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Total_1113_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006381 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 167563210 469327 408 387 1449 867 SRX2752456 Unrestricted 0.0 Metatranscriptome 3300030599 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Bb7 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030599 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 338129814 723974 98 97 1626 616 SRX4546990 Unrestricted 0.0 Metatranscriptome 3300041506 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaT AgResearch, New Zealand, Mosgeil 3300041506 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Unclassified Roots Unclassified White clover root -43.648506 172.343549 42198576 68747 268 179 1167 458 0.0 Metatranscriptome 3300046446 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_90_Fire (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046446 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1239 -81.3598 78735764 195362 139 114 912 563 Unrestricted 21.0 Metatranscriptome 3300017123 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/4 medium with seawater, at 20 C, 34 psu salinity and 251 ?mol photons light - Acanthoeca sp. 10tr (MMETSP0106_2) National Center for Genome Resources 3300017123 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 32428474 32730 47 13 97 49 0.0 Metatranscriptome 3300006720 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP2618 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006720 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 19.99 -52.64 133027513 396414 2866 2474 9732 8656 SRX3299174 Unrestricted 0.0 Metatranscriptome 3300010889 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS6_55_TP2_12L Marine Biological Laboratory 3300010889 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 86061 229 23 4 61 5 0.0 Metatranscriptome 3300029689 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_55m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029689 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 113995702 225116 294 57 4045 376 SRX5337943 Unrestricted 46.83 Metatranscriptome 3300042021 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Metatranscriptome of estuary water microbial communities from Narragansett Bay, Rhode Island, USA - E2_AmbCPB (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042021 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.9078 -71.5683 458884713 904718 278 85 484 688 SRX14873772 Unrestricted 15.39 Metatranscriptome 3300019040 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_065 - TARA_N000000963 (ERX1782167-ERR1712154) Canada's Michael Smith Genome Sciences Centre 3300019040 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -35.1728 26.2868 771578212 1998091 134 77 479 789 0.0 Metatranscriptome 3300041908 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaT_extra_run AgResearch, New Zealand, Mosgeil 3300041908 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Unclassified Roots Unclassified White clover root -43.648506 172.343549 2867599 5492 248 325 867 772 0.0 Metatranscriptome 3300019214 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - R.1189 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019214 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.234 -123.91 140089510 311064 154 385 552 8365 Unrestricted 0.0 Metatranscriptome 3300025756 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepB_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300025756 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 125033846 250763 62 88 300 643 SRX4547612 Unrestricted 17.89 Metatranscriptome 3300004514 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 109_LOW13 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004514 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 13206472 28824 37 8 207 16 SRX2780182 Unrestricted 0.0 Metatranscriptome 3300041515 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Bulk soil microbial community from Lincoln, Canterbury, New Zealand - BS17_2 MetaT AgResearch, New Zealand, Mosgeil 3300041515 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Environmental Terrestrial Unclassified Soil Agricultural land Dairy farm pasture soil -43.648506 172.343549 3127554 5297 109 98 534 182 0.0 Metatranscriptome 3300030841 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 EcM (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030841 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7184 6.3471 501189166 1497524 8469 3545 19682 10163 SRX3350120 Unrestricted 0.0 Metatranscriptome 3300006586 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Met_02_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006586 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 93673744 242610 477 548 2515 1302 SRX3362204 Unrestricted 0.0 Metatranscriptome 3300036172 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of phycosphere-associated microbial communities from LLNL, Livermore, CA, United States - Pt_6CLA_filter_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036172 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Phycosphere Diatoms Unclassified defined media 37.6818 -121.768 27600222 34381 1 2 3 51 SRX8240377 Unrestricted 130.66 Metatranscriptome 3300046568 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - G3-R1-A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046568 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3549 19.0438 178737624 398035 120 300 1373 1345 Unrestricted 31.13 Metatranscriptome 3300004593 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 34 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004593 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 71229001 237782 4591 2205 16816 4713 Unrestricted 0.0 Metatranscriptome 3300017081 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in L1 medium with seawater, 20 C, 33 psu salinity and 488 ?mol photons light - Imantonia sp. RCC918 (MMETSP1474) National Center for Genome Resources 3300017081 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -31.35 -78.1 24499004 31317 5 9 4 8 0.0 Metatranscriptome 3300003573 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_28 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003573 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes pettridge2@llnl.gov, nuccio1@llnl.gov; pettridge2@llnl.gov Jennifer Pett-Ridge, Erin Nuccio; Jennifer Pett-Ridge No Environmental Terrestrial Grasslands Soil Bulk soil Avena fatua rhizosphere 38.972988 -123.116539 94907493 291487 330 263 1974 2070 SRX2563406 Unrestricted 0.0 Metatranscriptome 3300041533 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_273 MetaT AgResearch, New Zealand, Mosgeil 3300041533 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 6123642 13465 134 28 918 65 0.0 Metatranscriptome 3300002679 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI074_165m_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002679 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 18894811 41056 20 7 258 157 Unrestricted 0.0 Metatranscriptome 3300018798 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_100 - TARA_N000001604 (ERX1789622-ERR1719156) Canada's Michael Smith Genome Sciences Centre 3300018798 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -13.0023 -95.9759 173898062 436310 4 15 18 137 0.0 Metatranscriptome 3300041499 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaT AgResearch, New Zealand, Mosgeil 3300041499 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Unclassified Roots Unclassified White clover root -43.648506 172.343549 5016144 9169 202 341 518 504 0.0 Metatranscriptome 3300035339 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0606S20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035339 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8959 -97.0388 68339835 140115 187 626 4949 1934 SRX8237032 Unrestricted 38.32 Metatranscriptome 3300042152 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Metatranscriptome of estuary water microbial communities from Narragansett Bay, Rhode Island, USA - E2_negO2CPB (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042152 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.9078 -71.5683 347037407 677594 270 47 579 429 Unrestricted 31.07 Metatranscriptome 3300043785 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA13 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043785 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Unclassified Soil Unclassified soil 35.7877 -78.6442 15423423 34152 107 320 1231 1842 Unrestricted 54.02 Metatranscriptome 3300029663 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Asp2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029663 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 50708945 102762 10 14 200 49 SRX5356123 Unrestricted 62.67 Metatranscriptome 3300030759 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030759 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 59.9979 10.7895 68800801 177095 47 102 379 602 SRX5351393 Unrestricted 0.0 Metatranscriptome 3300026416 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0914-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026416 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 116637958 222092 14 8 4 60 SRX4796190 Unrestricted 125.8 Metatranscriptome 3300049839 *Microbiome Permanent Draft Biofilm microbial communities of laboratory-scale, methanol-fed denitrifying cultures Biofilm microbial communities from seawater aquarium denitrification system in Montreal, Quebec, Canada - AucOB Genome Quebec 3300049839 Metatranscriptome Analysis Trinity v. 2.9.1 No Yes richard.villemur@iaf.inrs.ca Richard Villemur No Engineered Bioreactor Unclassified Denitrification Unclassified Biofilm 45.55969915 -73.54967371 54625270 144875 214 314 886 725 0.0 Metatranscriptome 3300008092 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - PM78.FECAL.14dpc CCME-COLORADO 3300008092 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 21250521 74362 108 4 1913 22 0.0 Metatranscriptome 3300052468 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 117-S78Day28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052468 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 110759338 229919 22 4 81 25 Unrestricted 41.56 Metatranscriptome 3300048741 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Metatranscriptome of hydrothermal vent fluid microbial communities from North Pacific Ocean - A5006-deckA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048741 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluid 9.838 -104.2914 32371271 74391 81 103 1169 498 Unrestricted 83.81 Metatranscriptome 3300048519 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_6_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048519 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 14267744 27588 2 3 14 4 Restricted 419.59 Metatranscriptome 3300024484 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepB_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024484 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 224600841 475558 114 152 1187 1781 SRX4547670 Unrestricted 18.27 Metatranscriptome 3300030648 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 9_T2E_8DKB8 developmental time series (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030648 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 55212024 74359 25 54 384 462 SRX4645940 Unrestricted 0.0 Metatranscriptome 3300053682 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T3_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053682 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 57538838 112498 22 2 145 28 Unrestricted 0.0 Metatranscriptome 3300036514 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp02_R54 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036514 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 198623405 410647 569 72 1225 1157 SRX8838867 Unrestricted 41.81 Metatranscriptome 3300050704 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae axenic culture microbial communities from LLNL, Livermore, California, USA - f29_d5_W_S44 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050704 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 21474942 24864 5 0 3 4 Restricted 160.08 Metatranscriptome 3300018674 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_026 - TARA_E400007200 (ERX1782187-ERR1712006) Canada's Michael Smith Genome Sciences Centre 3300018674 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 38.4761 20.1705 88750936 246328 64 16 250 386 0.0 Metatranscriptome 3300030762 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030762 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 59.9979 10.7895 29497069 67691 76 90 259 553 SRX5351835 Unrestricted 0.0 Metatranscriptome 3300031488 *Microbiome Permanent Draft Soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - STER_N_R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031488 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thb15@psu.edu Terrence Bell No Engineered Artificial ecosystem Surface biofilm Soil microcosm Unclassified soil 40.7997 -77.8629 16459993 29350 32 0 94 17 SRX6412189 Unrestricted 184.08 Metatranscriptome 3300052341 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of lake water microbial communities from Sandhills, Nebraska, United States - NSL_Island_2017 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052341 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.73469 -102.41001 39516102 97431 181 114 830 533 Unrestricted 510.96 Metatranscriptome 3300038170 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_M1_C1_D3_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038170 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 62555464 131603 323 411 3324 1343 SRX9391007 Unrestricted 210.43 Metatranscriptome 3300024565 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepC_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024565 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 247473218 518238 119 152 1283 1894 SRX4547717 Unrestricted 20.37 Metatranscriptome 3300011070 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 52 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011070 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 72625611 167479 207 296 20306 2075 Unrestricted 0.0 Metatranscriptome 3300009342 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from the North Atlantic ocean - ACM59 University of Georgia 3300009342 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 42238383 125137 26 129 82 364 0.0 Metatranscriptome 3300017145 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Irish Sea in f/2 medium with seawater w/o silicate, in 29.4 psu salinity and 687 ?mol photons light - Isochrysis galbana CCMP 1323 (MMETSP0595) National Center for Genome Resources 3300017145 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 54.085 4.77 32397230 33826 5 2 8 2 0.0 Metatranscriptome 3300016784 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, no silica, at 16 C, 34 psu salinity and 244 ?mol photons light - Isochrysis sp. CCMP 1324 (MMETSP1131) National Center for Genome Resources 3300016784 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 9924345 17409 21 8 36 27 0.0 Metatranscriptome 3300041666 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_138 MetaT AgResearch, New Zealand, Mosgeil 3300041666 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 47011592 107419 205 48 1443 101 0.0 Metatranscriptome 3300053653 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T4_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053653 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 101881277 211925 76 31 262 148 Unrestricted 0.0 Metatranscriptome 3300010904 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS917_55_12C_TP1_INC3_7 Marine Biological Laboratory 3300010904 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 1375686 2711 65 5 191 17 0.0 Metatranscriptome 3300009561 *Microbiome Permanent Draft Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea North East Pacific Ocean microbial community - Bloomer_DOMexp_DOMadd_2hr_metatranscriptome Massachusetts Institute of Technology 3300009561 Metatranscriptome Analysis Greengenes NAST aligner, Ribosomal Database Project (RDP) naive Bayesian classifier released per JGI data release policy No Yes sarabc@mit.edu Sara Collins No Environmental Aquatic Epipelagic Marine Unclassified open ocean 23.214666 -159.136166 55581457 225145 27226 796 177328 5605 0.0 Metatranscriptome 3300017483 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Gulf of Mexico in f/2 medium with artificial seawater w/o silicate, 18 C, 28 psu salinity and 698 ?mol photons light - Lingulodinium polyedrum CCMP 1738 (MMETSP1035) National Center for Genome Resources 3300017483 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 27.8 -97.13 82114081 101572 14 9 24 10 0.0 Metatranscriptome 3300048940 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048940 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.7497 -81.8352 26054873 57794 84 17 182 116 Restricted 41.59 Metatranscriptome 3300017558 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of freshwater eukaryotic communities from Lake Texoma, Oklahoma in f/2 medium with seawater, 18 C, 18 psu salinity and 200 ?mol photons light - Prymnesium parvum Texoma1 (MMETSP0008_2) (SRX549025-SRR1294411) National Center for Genome Resources 3300017558 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 33.98 -96.67 44230613 48666 23 8 39 4 0.0 Metatranscriptome 3300003950 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS907_80_13H6 Marine Biological Laboratory 3300003950 Metatranscriptome Analysis CLC Genomics WB7 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933 -130.014 1191941 3098 16 0 35 0 0.0 Metatranscriptome 3300017611 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in K medium, 20 C, 35 psu salinity and 116 ?mol photons light - Florenciella sp. RCC1007 (MMETSP1325) (SRX549042-SRR1294428) National Center for Genome Resources 3300017611 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -8.33333333 -141.25 12604733 36209 109 11 195 14 0.0 Metatranscriptome 3300043280 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - Treefall.Jun19.R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043280 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.5322 -110.7965 8-9 65836506 131915 39 0 442 1 SRX10106457 Unrestricted 42.29 Metatranscriptome 3300023671 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 67R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023671 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 5473721 11605 10 7 342 246 SRX4475681 Unrestricted 117.76 Metatranscriptome 3300056984 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Frasne, France - Sphagnum fallax 5C_SF_FR (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056984 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 328547780 708193 247 123 596 625 Unrestricted 79.45 Metatranscriptome 3300004767 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004767 Metatranscriptome Analysis megahit v. 0.2.0 No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 204431865 587285 4104 1261 9359 6334 SRX2518462 Unrestricted 0.0 Metatranscriptome 3300042423 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_71_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042423 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 48068703 61836 1 0 16 1 Unrestricted 319.6 Metatranscriptome 3300032504 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow Y-1 rumen fluid (Eukaryote Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032504 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 40.102108 -88.227299 85382689 145924 79 78 334 126 SRX5780734 Unrestricted 0.0 Metatranscriptome 3300012748 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES045 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012748 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 68346473 141848 169 101 1471 2481 SRX3010753 Unrestricted 0.0 Metatranscriptome 3300031582 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_D6_8mM_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031582 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 29219720 41848 0 1 3 3 SRX6408125 Unrestricted 56.88 Metatranscriptome 3300018956 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_072 - TARA_N000000841 (ERX1782332-ERR1711962) Canada's Michael Smith Genome Sciences Centre 3300018956 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.6996 -17.9926 397656480 717480 7 48 30 217 0.0 Metatranscriptome 3300035628 *Microbiome Permanent Draft Sediment microbial communities from Lake Washington near Medina, WA, United States Metatranscriptome of methane-enriched sediment microbial communities from Lake Washington, WA, United States - LO-FL-FA-1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035628 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment sediment 47.6215 -122.2558 45970822 80513 4 0 10 2 SRX8380049 Unrestricted 443.5 Metatranscriptome 3300009385 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from Amazon river, Brazil - RCM5 University of Georgia 3300009385 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic River Freshwater Unclassified River water 99643732 293413 30 20 244 196 SRX858778 0.0 Metatranscriptome 3300017182 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L/25 medium w/o phosphorous, at 18 C, 32 psu salinity and 353 ?mol photons light - Gephyrocapsa oceanica RCC 1303 (MMETSP1366) National Center for Genome Resources 3300017182 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 40118266 50252 4 2 4 3 0.0 Metatranscriptome 3300046281 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_4_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046281 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 49227181 78736 2 0 29 3 Restricted 226.42 Metatranscriptome 3300008437 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy - t0.CR.RNAseq.exp1 University of Naples 3300008437 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Cheese 13801 48 4 0 26 1 0.0 Metatranscriptome 3300010134 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_8_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010134 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 90969560 212432 84 660 7815 5230 Unrestricted 0.0 Metatranscriptome 3300051439 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 168_100_14 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051439 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 19731979 52772 152 223 1049 1219 Unrestricted 216.42 Metatranscriptome 3300030531 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO143-VCO038SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030531 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2881 -71.1837 406018804 970370 119 103 3360 2294 SRX4011289 Unrestricted 0.0 Metatranscriptome 3300046429 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_20_Control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046429 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1753 -81.364 92572008 214994 453 253 2674 1268 Unrestricted 101.14 Metatranscriptome 3300030630 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO151-VCO115SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030630 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr; fmartin@nancy.inra.fr Francis M. Martin; Francis M. MARTIN No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.318 -71.1037 581789188 1268835 92 100 1173 604 SRX4391379 Unrestricted 0.0 Metatranscriptome 3300051593 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 24_100_14 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051593 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 122400676 329589 246 279 1774 1634 Unrestricted 58.68 Metatranscriptome 3300034673 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034673 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 296367375 691781 229 973 3496 4438 SRX7520401, SRX9093914 Unrestricted 0.0 Metatranscriptome 3300043906 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA108 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043906 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Unclassified Soil Unclassified soil 35.7877 -78.6442 81585954 163600 219 271 1643 1879 Unrestricted 59.24 Metatranscriptome 3300026571 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_UVDOM_RepB_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026571 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 244152715 510368 144 289 1461 2810 SRX4797199 Unrestricted 20.7 Metatranscriptome 3300006605 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006605 Metatranscriptome Analysis megahit v. 0.2.0 No Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil 45.54 -73.72 794317383 2679759 179 16 367 57 SRX2522018 Unrestricted 0.0 Metatranscriptome 3300012764 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES155 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012764 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 128448783 269423 171 268 2106 4915 SRX3527333 Unrestricted 0.0 Metatranscriptome 3300032415 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day7_8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032415 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 29988533 50355 8 0 31 0 SRX6857533 Unrestricted 249.32 Metatranscriptome 3300036405 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0R4 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300036405 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 394204764 918226 312 1281 5889 6058 SRX8834026, SRX8834027 Unrestricted 0.0 Metatranscriptome 3300052444 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 88-S41Day7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052444 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 98534482 199739 44 2 135 18 Unrestricted 98.66 Metatranscriptome 3300032433 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day12_7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032433 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 32661498 54541 6 0 25 0 SRX6858015 Unrestricted 270.25 Metatranscriptome 3300025726 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepA_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300025726 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 15686503 33414 13 16 69 90 SRX4547647 Unrestricted 15.52 Metatranscriptome 3300016682 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES101 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016682 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Hypolimnion/Profundal zone freshwater 46.041 -89.686 61709950 117401 42 118 1474 2818 SRX3780035 Unrestricted 0.0 Metatranscriptome 3300006718 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0747 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006718 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -32.4846 12.4609 132557595 367702 3163 2530 8396 6565 SRX3324854 Unrestricted 0.0 Metatranscriptome 3300021263 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.433 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021263 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.313 -123.997 32080367 73970 314 592 3435 5064 SRX4016324 Unrestricted 0.0 Metatranscriptome 3300037698 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Metatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_07 (Metagenome Metatranscriptome) - NovaSeq (version 2) DOE Joint Genome Institute (JGI) 3300037698 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen 49.6935 -112.8418 212779040 349433 10 27 112 60 SRX4550438, SRX7705827 Unrestricted 0.0 Metatranscriptome 3300004473 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004473 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 148488195 447631 8864 3728 33421 8083 Unrestricted 0.0 Metatranscriptome 3300030664 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 5_T1F_3DKB8 developmental time series (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030664 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 51027088 69599 19 30 367 381 SRX4645835 Unrestricted 0.0 Metatranscriptome 3300017153 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Baffin Bay in L1 medium with sea water and antibiotics, 6 C, 36 psu salinity and 190 ?mol photons light - unclassified eukaryote CCMP 2097 (MMETSP0974) National Center for Genome Resources 3300017153 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 77.0014 -77.2383 29135779 33922 5 6 29 4 0.0 Metatranscriptome 3300013067 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Organic Plus compost microbial communities from Emeryville, California, USA - RNA 3rd pass 30_C BE-Lig OP (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013067 Metatranscriptome Analysis megahit v. 1.0.6 No Yes jmgladden@lbl.gov John Gladden No Environmental, Engineered Terrestrial, Solid waste Composting Soil, Mixed feedstock Commercial compost compost 37.83 -122.29 58126967 115169 9 457 220 1282 SRX3901991 Unrestricted 0.0 Metatranscriptome 3300010017 *Microbiome Permanent Draft Black Band Disease transitions Microbial communities of stony corals with Black-band disease (BBD) from Carrie Bow Cay Field Station, Belize; BBD Transitions coral #3 sample H3 University of Maryland 3300010017 Metatranscriptome Analysis IDBA-Tran v1.1.1 released per JGI data release policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified marine 16.80288 -88.08213 128751686 275797 1 8 6 15 0.0 Metatranscriptome 3300022375 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States - R1183 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022375 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 46.234 -123.909 77396650 158015 103 241 553 1575 SRX4015620 Unrestricted 0.0 Metatranscriptome 3300052731 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MT_220318 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052731 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 36395562 75645 25 9 909 25 Unrestricted 0.0 Metatranscriptome 3300021876 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-18 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021876 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine -22.6443 7.1921 35802994 85277 46 38 110 171 SRX6381385 Unrestricted 0.0 Metatranscriptome 3300009732 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from Louisiana Shelf, Gulf of Mexico - GoM_2015_C6C_232_2m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009732 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 28.8679 -90.4764 60842409 113234 135 98 875 2589 Unrestricted 0.0 Metatranscriptome 3300007592 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_C3_LD (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007592 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 56984647 193422 14824 6920 39778 17278 SRX5781058 Unrestricted 0.0 Metatranscriptome 3300010195 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1500_T MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010195 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 123384564 310030 35 4 365 7 SRX2521303, SRX2521304 Unrestricted 0.0 Metatranscriptome 3300048829 *Microbiome Permanent Draft Sediment microbial communities from freshwater and brackish wetlands in California and Colorado, USA Metatranscriptome of sediment microbial communities from freshwater Prado Wetlands in Corona, California, USA - CSM_Prado_Oct18_PM_2.5z2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048829 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jsharp@mines.edu Jonathan Sharp No Environmental Aquatic Wetlands Freshwater Sediment Sediment 33.919031 -117.617686 44420534 93600 33 88 837 406 Unrestricted 49.63 Metatranscriptome 3300012730 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES126 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012730 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 198660884 408387 70 168 459 4097 SRX3011100 Unrestricted 0.0 Metatranscriptome 3300049805 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Metatranscriptome of woodchip biofilm microbial communities from lab scale WBRs in New York, USA - hf_drw_p2_t10_h100_prok (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049805 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 95941498 230722 72 65 596 339 Unrestricted 44.49 Metatranscriptome 3300035596 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - May M (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035596 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4316 16.6833 126623258 269941 109 284 1430 1267 SRX8210276 Unrestricted 47.62 Metatranscriptome 3300032599 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 switchgrass (Eukaryote Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032599 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 40.102108 -88.227299 85353047 186846 70 47 258 101 SRX5780726 Unrestricted 0.0 Metatranscriptome 3300022531 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022531 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 397157996 920943 448 699 8359 4817 SRX4404970 Unrestricted 0.0 Metatranscriptome 3300008312 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.7.4OB.15dpc CCME-COLORADO 3300008312 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 3475806 14463 49 6 624 7 0.0 Metatranscriptome 3300008783 *Microbiome Permanent Draft Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico - 300m_>1.6micron Georgia Institute of Technology 3300008783 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hypoxic zone Marine Unclassified Ocean water 18.9 -104.5 2016272 4186 13 23 847 231 SRX895496 0.0 Metatranscriptome 3300061827 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 53_cerealrye_1_T5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061827 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 34842529 91041 72 74 714 611 Unrestricted 166.05 Metatranscriptome 3300031809 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLA5 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031809 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 49.0448 13.618 18543492 38453 313 303 2289 1758 SRX4455184, SRX5243271 Unrestricted 0.0 Metatranscriptome 3300035305 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R1105U12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035305 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0387 124970667 250232 373 1451 6452 4029 SRX8236827 Unrestricted 61.05 Metatranscriptome 3300019038 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_143 - TARA_N000003141 Canada's Michael Smith Genome Sciences Centre 3300019038 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 29.6721 -79.5929 692174122 1380736 5 67 14 362 0.0 Metatranscriptome 3300037774 *Microbiome Permanent Draft Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States Metatranscriptome of soil eukaryotic communities from experimental microcosm in Duke University, North Carolina, United States - s113 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037774 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes colin.averill@usys.ethz.ch Colin Averill No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 36.0 -78.0 57591640 112938 56 164 876 1347 SRX9169945 Unrestricted 42.92 Metatranscriptome 3300017347 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no Na2SiO3, 25 C, 34 psu salinity and 400 ?mol photons light - Symbiodinium sp. CCMP 421 (MMETSP1110) National Center for Genome Resources 3300017347 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -41.27 174.795 92571224 113982 6 3 9 4 0.0 Metatranscriptome 3300016971 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/4 medium with seawater, at 20 C, 34 psu salinity and 631 ?mol photons light - Acanthoeca sp. 10tr (MMETSP0105_2) National Center for Genome Resources 3300016971 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 28042111 33264 44 17 74 22 0.0 Metatranscriptome 3300018926 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_092 - TARA_N000001309 (ERX1789376-ERR1719276) Canada's Michael Smith Genome Sciences Centre 3300018926 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -33.6895 -71.998 336765957 794809 16 16 22 119 0.0 Metatranscriptome 3300028672 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Metatranscriptome of marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_10m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028672 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified marine 50.0 -145.0 195088556 367378 131 9 221 422 SRX5337926 Unrestricted 17.86 Metatranscriptome 3300026394 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0918-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026394 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 86236620 140375 68 6 112 50 SRX4796195 Unrestricted 71.71 Metatranscriptome 3300032746 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Plim7_28May_deep (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032746 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 774301252 1345635 19 7 50 208 SRX6411386 Unrestricted 0.0 Metatranscriptome 3300043274 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - FS5.Jun19.R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043274 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.5326 -110.7972 8-9 76237813 157910 62 2 573 1 SRX10106071 Unrestricted 40.48 Metatranscriptome 3300035610 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0819S02 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300035610 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0388 67569052 144770 303 533 5390 1846 SRX9140147, SRX9140148 Unrestricted 0.0 Metatranscriptome 3300049549 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G24_A_5_control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049549 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 47851050 116239 147 86 729 599 Unrestricted 249.26 Metatranscriptome 3300011084 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 47 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011084 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 107519251 241578 255 581 17732 3012 Unrestricted 0.0 Metatranscriptome 3300003721 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003721 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.6 -123.5 26725207 51065 337 469 793 1207 SRX2568596 Unrestricted 0.0 Metatranscriptome 3300005410 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1300_T MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005410 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 60362284 143753 38 2 162 5 SRX2521299, SRX2521300 Unrestricted 0.0 Metatranscriptome 3300018680 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_093 - TARA_N000001123 (ERX1789497-ERR1719250) Canada's Michael Smith Genome Sciences Centre 3300018680 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -33.9477 -73.0635 117388557 269527 2 17 3 84 0.0 Metatranscriptome 3300018581 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_051 - TARA_N000000225 (ERX1782098-ERR1712053) Canada's Michael Smith Genome Sciences Centre 3300018581 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -21.4689 54.3066 37844087 96772 17 47 103 462 0.0 Metatranscriptome 3300016770 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine host-associated eukaryotic communities from Pacific Ocean in 221 ?mol photons light - Lankesteria abbotti Grappler Inlet BC (MMETSP0372) National Center for Genome Resources 3300016770 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Tunicates Unclassified Unclassified Unclassified marine host-associated 48.83375 125.13023 8296232 14625 2 3 1 4 0.0 Metatranscriptome 3300046189 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_6_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046189 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 27326552 54786 1 0 11 0 Restricted 150.21 Metatranscriptome 3300008752 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - E13.FECAL.14dpc CCME-COLORADO 3300008752 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 13913824 50369 100 1 1605 15 0.0 Metatranscriptome 3300011322 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S12 250_B metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011322 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 117220984 268717 34 63 2970 2548 SRX3196643 Unrestricted 0.0 Metatranscriptome 3300030729 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB21_1108_32.2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030729 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 74.0136 -139.5971 203251124 410988 200 51 570 1126 SRX5651265 Unrestricted 20.99 Metatranscriptome 3300030917 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB5 Emin (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030917 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7585 6.3578 571219472 1798448 19758 2360 33774 7290 SRX3349468 Unrestricted 0.0 Metatranscriptome 3300002877 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_200m_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002877 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 29310684 67142 44 37 663 348 Unrestricted 0.0 Metatranscriptome 3300005246 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_2300_T MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005246 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 47089702 113381 70 4 309 13 SRX2521361, SRX2521362 Unrestricted 0.0 Metatranscriptome 3300046544 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_1_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046544 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 30602063 43286 1 0 21 0 Restricted 264.36 Metatranscriptome 3300008769 *Microbiome Permanent Draft Microbial communities of mouse gut induced with colitis from Vienna, Austria Microbial communities of mouse gut induced with colitis from Vienna, Austria - 9971_ATGCT University of Vienna 3300008769 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Stomach Digestive system Forestomach Foregut of mice 28349886 107254 180 0 1534 27 SRX326438 0.0 Metatranscriptome 3300046068 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-180 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046068 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4963 -64.2287 56955418 139460 612 30 1049 497 Unrestricted 30.12 Metatranscriptome 3300035574 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - 8M (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035574 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4316 16.6833 59767749 123253 471 881 4293 2827 SRX8209282 Unrestricted 27.83 Metatranscriptome 3300017581 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 20 C, 28 psu salinity and 694 ?mol photons light - Amphidinium carterae CCMP 1314 (MMETSP0398) (SRX549006-SRR1294392) National Center for Genome Resources 3300017581 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 41.56 -70.583 2152183 4555 5 10 21 15 0.0 Metatranscriptome 3300049556 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_B_5_drought (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049556 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 60296123 151421 123 86 648 547 Unrestricted 148.88 Metatranscriptome 3300021894 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-63M (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021894 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 96036449 176144 41 33 90 133 SRX5203261 Unrestricted 0.0 Metatranscriptome 3300032759 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_15MAY2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032759 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3951 -85.3736 65433157 110327 17 12 31 67 SRX7519522 Unrestricted 47.49 Metatranscriptome 3300016914 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, no silica, at 16 C, 31 psu salinity and 249 ?mol photons light - Dunaliella tertiolecta CCMP 1320 (MMETSP1126) National Center for Genome Resources 3300016914 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 24415423 30135 3 4 11 10 0.0 Metatranscriptome 3300037711 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of photosynthetic mat microbial communities from Mushroom Spring, YNP, Wyoming, United States - 20090731 0000 sample R15cd (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037711 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 113491702 284537 0 0 43 1 SRX9381209 Unrestricted 190.54 Metatranscriptome 3300021970 *Microbiome Permanent Draft Anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States Metatranscriptome of anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States - LAC_MetaT_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021970 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes alvarez@ce.berkeley.edu Lisa Alvarez-Cohen No Engineered Bioreactor Unclassified Anaerobic Unclassified anaerobic bioreactor biomass 37.8719 -122.2585 134166720 436588 5 19 1415 130 SRX4020279 Unrestricted 0.0 Metatranscriptome 3300006590 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Leu_02_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006590 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 114390631 294426 261 227 1112 482 SRX3361408 Unrestricted 0.0 Metatranscriptome 3300006691 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP138 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006691 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 14.52 -26.0 50044556 152259 836 2167 2559 6321 SRX3299178 Unrestricted 0.0 Metatranscriptome 3300016993 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Sea in f/2 medium, 13 C, 21 psu salinity and 210 ?mol photons light - Corethron hystrix 308 (MMETSP0010_2) National Center for Genome Resources 3300016993 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 58.5 0.32 28880743 34207 17 3 37 4 0.0 Metatranscriptome 3300059640 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 8R_CD_T1_R4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059640 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 425243426 1051953 448 310 1661 1673 Unrestricted 41.29 Metatranscriptome 3300019133 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_083 - TARA_N000001377 (ERX1782440-ERR1712071) Canada's Michael Smith Genome Sciences Centre 3300019133 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -54.3739 -65.1342 270040840 553274 143 50 252 380 0.0 Metatranscriptome 3300036491 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Growout1_07 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036491 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 211152817 450323 674 66 1256 1168 SRX8820315 Unrestricted 20.02 Metatranscriptome 3300042986 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Metataranscriptome of bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_016 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042986 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -19.6574 146.8351 555528561 1222383 4 108 88 619 SRX9717777, SRX9161808 Unrestricted 0.0 Metatranscriptome 3300019115 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_131 - TARA_N000002358 (ERX1782231-ERR1711979) Canada's Michael Smith Genome Sciences Centre 3300019115 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 22.7281 -158.0907 78487825 199802 71 29 446 585 0.0 Metatranscriptome 3300008884 *Microbiome Permanent Draft Microbial communities of wastewater sludge from Singapore Microbial communities of wastewater sludge from Singapore - Sludge3_b2_February Singapore Centre on Environmental Life Sciences Engineering (SCELSE) 3300008884 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Wastewater Unclassified Activated Sludge Unclassified Wastewater sludge 1.2 103.45 278022954 1101976 6419 1164 42782 3871 SRX373538 0.0 Metatranscriptome 3300018528 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_135 - TARA_N000002171 (ERX1782117-ERR1711864) Canada's Michael Smith Genome Sciences Centre 3300018528 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 33.0339 -121.8782 26667748 59206 1 2 7 38 0.0 Metatranscriptome 3300004137 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF202 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004137 Metatranscriptome Analysis megahit v. 0.2.0 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.531427 -72.189946 159988194 560289 2351 1086 8358 3871 SRX2013853 Unrestricted 0.0 Metatranscriptome 3300016822 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 mediium with seawater, at 24 C, 33 psu salinity and 484 ?mol photons light - Exanthemachrysis gayraliae RCC 1523 (MMETSP1464) National Center for Genome Resources 3300016822 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 18383494 23346 23 1 28 1 0.0 Metatranscriptome 3300046325 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_4_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046325 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 55252045 101017 1 0 15 0 Restricted 228.31 Metatranscriptome 3300019097 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_025 - TARA_A100000393 (ERX1782443-ERR1712022) Canada's Michael Smith Genome Sciences Centre 3300019097 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.3888 19.3905 70254173 174129 66 4 308 267 0.0 Metatranscriptome 3300043800 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA110 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043800 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Unclassified Soil Unclassified soil 35.7877 -78.6442 22557587 43231 157 299 1188 1783 Unrestricted 94.12 Metatranscriptome 3300009221 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from Amazon river, Brazil - RCM2 University of Georgia 3300009221 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic River Freshwater Unclassified River water 199654097 578757 74 53 920 348 SRX857646 0.0 Metatranscriptome 3300010101 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_24_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010101 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 59226333 138634 76 509 5112 4658 Unrestricted 0.0 Metatranscriptome 3300036416 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of sediment microbial communities from Prado wetlands, California, USA - CSM_Prado_Oct18_AM3_2.5z2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036416 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 94761366 196227 101 248 1095 1089 SRX8771510 Unrestricted 31.47 Metatranscriptome 3300046228 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_5_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046228 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 60486355 102997 2 0 23 4 Restricted 141.88 Metatranscriptome 3300029627 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Ile1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029627 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 47673476 91103 12 7 180 33 SRX5356192 Unrestricted 93.05 Metatranscriptome 3300008909 *Microbiome Permanent Draft Eukaryotic communities of quiescent and activated human skeletal muscle stem cells from California, USA Eukaryotic communities of quiescent and activated human skeletal muscle stem cells from California, USA - Quiescent 1 Stanford University 3300008909 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human HuSC Cell culture Unclassified Human skeletal muscle 37.43 -122.17 26628550 63099 0 2 0 3 ERX1052321 0.0 Metatranscriptome 3300031053 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 6 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031053 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ake.olson@slu.se; francis.martin@inrae.fr Ake Olson; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 337407284 789163 679 226 1360 461 SRX3344955 Unrestricted 0.0 Metatranscriptome 3300034086 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day5_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034086 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 10236664 20271 1 0 33 1 SRX7582885 Unrestricted 50.68 Metatranscriptome 3300037637 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_M1_C2_D2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037637 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 32091195 57314 583 1705 6972 4237 SRX9383750 Unrestricted 155.42 Metatranscriptome 3300028170 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0744-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028170 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 250325932 415384 51 2 44 76 SRX5254285 Unrestricted 36.06 Metatranscriptome 3300001810 *Microbiome Permanent Draft Microbial community impact on carbon sequestration in managed wetland Carbon farming Wetland microbial communities from Twitchell Island in the Sacramento Delta, California, USA - surface sediment Aug2011 Site C1 Bulk Metatranscriptome (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300001810 Metatranscriptome Analysis No Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Wetland 38.1075 -121.6497 145279119 453069 150 1135 7925 9334 SRX2553477 Unrestricted 0.0 Metatranscriptome 3300008592 *Microbiome Permanent Draft Microbial communities of corn and soybean rhizosphere soil from Ohio, USA Microbial communities of corn rhizosphere soil from Ohio, USA - Corn_Control_1b Auburn University 3300008592 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Plants Rhizosphere Roots Soil Rhisosphere soil 5744596 23107 371 164 14877 1644 SRX1078301 0.0 Metatranscriptome 3300041744 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_45 MetaT AgResearch, New Zealand, Mosgeil 3300041744 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 75996806 174356 190 56 1906 107 0.0 Metatranscriptome 3300026439 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepB_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026439 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 146473470 295698 60 135 391 753 SRX4547807 Unrestricted 21.58 Metatranscriptome 3300055056 *Microbiome Permanent Draft Acid mine drainage microbial communities from coal mines in Pennsylvania and Ohio, United States Metatranscriptome of lab enriched acid mine drainage microbial communities from Akron, Ohio, USA - PML3_0D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055056 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes shagun2260@gmail.com Shagun sharma No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage acid mine drainage 41.07755 -81.511441 8929001 16125 29 36 158 217 Restricted 287.09 Metatranscriptome 3300012397 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012397 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 169919013 413895 74 501 7050 4958 Unrestricted 0.0 Metatranscriptome 3300031082 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_193 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031082 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040592 -106.9484972 155810146 350441 773 545 2637 2517 SRX8134328 Unrestricted 24.62 Metatranscriptome 3300049698 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Weichs, Bavaria, Germany - PB8_MT_220218 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049698 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 48.39537892 11.44760761 149593346 303753 8 11 150 20 Unrestricted 39.53 Metatranscriptome 3300028321 *Microbiome Permanent Draft Black Band Disease transitions Cyanobacterial mat microbial communities from surface of stony corals with Black-band disease (BBD), Florida Keys National Marine Sanctuary, USA - LKB2 University of Florida 3300028321 Metatranscriptome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Coral Cnidaria Surface cyanobacterial mat 24.5484806 -81.4059137 47177707 174234 96 6 343 24 0.0 Metatranscriptome 3300037026 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Omics07_030718 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037026 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 327026801 691175 810 57 1449 1404 SRX8834183 Unrestricted 20.72 Metatranscriptome 3300017010 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Arctic Ocean in K/2 medium with silica, 4 C, 35 psu salinity and 107 ?mol photons light - Chaetoceros cf. neogracile RCC 1993 (MMETSP1336) National Center for Genome Resources 3300017010 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 70.68333333 -138.3666667 22744446 26184 3 1 2 1 0.0 Metatranscriptome 3300033570 *Microbiome Permanent Draft FORHOT Natural soil warming experiment in Iceland Soil microbial communities from grassland in Hveragerdi, Iceland - GO1-A University of Vienna 3300033570 Metatranscriptome Analysis rnaSPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes craig.herbold@microbial-ecology.net Craig Herbold No Environmental Terrestrial Unclassified Soil Grasslands Soil 64.025 -21.205 2162296043 8812430 267782 25103 773433 51456 0.0 Metatranscriptome 3300017167 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater and 400nM iron, 19 C, 35 psu salinity and 399 ?mol photons light - Thalassiosira weissflogii CCMP 1010 (MMETSP0898_2) National Center for Genome Resources 3300017167 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.0 -65.0 33720465 34665 2 1 4 1 0.0 Metatranscriptome 3300013053 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - RNA 5th pass 30_C BE-Lig MG (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013053 Metatranscriptome Analysis megahit v. 1.0.6 No Yes jmgladden@lbl.gov John Gladden No Environmental, Engineered Terrestrial, Solid waste Composting Soil, Mixed feedstock Commercial compost compost 37.83 -122.29 41288957 65478 19 27 147 2788 SRX3902049 Unrestricted 0.0 Metatranscriptome 3300018820 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_036 - TARA_N000000312 (ERX1789518-ERR1719511) Canada's Michael Smith Genome Sciences Centre 3300018820 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 20.8116 63.5128 181772608 445563 4 59 20 349 0.0 Metatranscriptome 3300017244 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Northern Baffin Bay in L1 medium with seawater and antibiotics, 6 C, 36 psu salinity and 380 ?mol photons light - unclassified eukaryote CCMP 2098 (MMETSP0992) National Center for Genome Resources 3300017244 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 76.285 -73.0575 43275450 63380 8 12 6 15 0.0 Metatranscriptome 3300022504 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-M (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022504 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 160638980 365799 391 521 10552 3945 SRX4399753 Unrestricted 0.0 Metatranscriptome 3300021257 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States - S.272 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021257 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.178 -123.853 27217085 60990 282 661 9323 4602 SRX4016026 Unrestricted 0.0 Metatranscriptome 3300032406 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day9_7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032406 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 23497631 40415 14 0 70 8 SRX6857981 Unrestricted 203.69 Metatranscriptome 3300024547 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Miss_RepB_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024547 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 201575097 426632 47 154 958 1257 SRX4547787 Unrestricted 33.71 Metatranscriptome 3300041685 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_322 MetaT AgResearch, New Zealand, Mosgeil 3300041685 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 7612853 16681 144 60 960 128 0.0 Metatranscriptome 3300004491 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 122_LOW14 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004491 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 13904256 31791 37 2 166 3 SRX2725797 Unrestricted 0.0 Metatranscriptome 3300017058 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Baffin Bay in L1 medium with sea water and antibiotics, 6 C, 36 psu salinity and 491 ?mol photons light - unclassified eukaryote CCMP 2097 (MMETSP0975) National Center for Genome Resources 3300017058 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 77.0014 -77.2383 24975009 30167 3 14 3 22 0.0 Metatranscriptome 3300048092 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P11SSC1_190916_c (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048092 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 77524021 184609 139 358 2155 1941 SRX20649779 Unrestricted 180.7 Metatranscriptome 3300008741 *Microbiome Permanent Draft Subsurface hydrocarbon microbial communities from various worldwide Shell locations Sea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC10B Shell Corporation 3300008741 Metatranscriptome Analysis Trinity Released on PI's request No Yes ebalsop@lbl.gov, nicolas.tsesmetzis@shell.com Eric Alsop, Nicolas Tsesmetzis No Environmental Aquatic Cold seeps Marine Sediment sediment 27.4 -93.2 193659481 908871 78 68 6265 586 0.0 Metatranscriptome 3300008036 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Puerto Morelos, Mexico - Diploria C B metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300008036 Metatranscriptome Analysis megahit v. 0.2.0 No Yes momedinamunoz@gmail.com Monica _ Medina, Medina Medina No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral host 20.8778 -86.8431 281151179 417771 117 155 380 447 SRX3362336 Unrestricted 0.0 Metatranscriptome 3300006860 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 63 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006860 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 154815972 534394 4312 2354 15700 5067 Unrestricted 0.0 Metatranscriptome 3300012767 *Microbiome Permanent Draft Polar marine prokaryotic and eukaryotic communities from Antarctica during spring seasonal transition Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Arthur Harbor ice station, Antarctica - RNA29.ICE_1m.20151125 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012767 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bowmanjs@ldeo.columbia.edu Jeff Bowman Yes Environmental Aquatic Unclassified Marine Unclassified Polar marine -64.7711 -64.056 133849176 295505 323 249 1842 16705 SRX3379825 Unrestricted 0.0 Metatranscriptome 3300004101 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF228 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004101 Metatranscriptome Analysis megahit v. 0.2.0 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.531427 -72.189946 137580143 461234 69 39 227 302 SRX2014017 Unrestricted 0.0 Metatranscriptome 3300031064 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PO 3C (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031064 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 553309712 1478344 5697 1070 10900 4301 SRX2753441 Unrestricted 0.0 Metatranscriptome 3300033529 *Microbiome Permanent Draft Rhizosphere microbial communities from salt marsh grasses in Alabama, United States Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300033529 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes omason@fsu.edu Olivia Mason No Host-associated Plants Rhizosphere Roots Unclassified rhizosphere 30.2619 -88.2383 194375212 409958 460 1646 7467 6134 SRX7525043 Unrestricted 27.59 Metatranscriptome 3300018879 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_152 - TARA_N000002480 (ERX1789365-ERR1719178) Canada's Michael Smith Genome Sciences Centre 3300018879 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine 43.7056 -16.8794 241181746 572751 15 24 62 265 0.0 Metatranscriptome 3300035440 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Antarctic Ocean - DFB2_04 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035440 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified Seawater -46.5954 142.0314 443694970 875391 879 51 1544 1443 SRX8222502 Unrestricted 15.87 Metatranscriptome 3300019076 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS683_0p8 J. Craig Venter Institute (JCVI) 3300019076 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 9329727 42027 22 9 62 103 0.0 Metatranscriptome 3300052322 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_1A1_100118_1351 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052322 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@dbi.udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 54671314 134703 362 103 894 532 Unrestricted 316.25 Metatranscriptome 3300046225 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_5_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046225 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 75494551 127601 1 0 15 1 Restricted 140.93 Metatranscriptome 3300006706 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP0958 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006706 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -27.587 63.1486 86150617 261088 3435 3492 10411 8878 SRX3325042 Unrestricted 0.0 Metatranscriptome 3300010137 *Microbiome Permanent Draft Soil microbial communities from various locations in USA and Cambodia to study soil gas exchange rates Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010137 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Oak savanna Soil Unclassified Soil 34.0938 -118.6572 88712635 222968 257 922 37451 7177 SRX2525531 Unrestricted 0.0 Metatranscriptome 3300022236 *Microbiome Permanent Draft Characterization of microbial community from Mariana Back Arc Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Hafa_FS926_RNA_SIP 150_kmer Marine Biological Laboratory 3300022236 Metatranscriptome Analysis IDBA-UD 1.1.3 Trembath-Reichert et al. ?Active subseafloor microbial communities from Mariana back-arc venting fluids share metabolic strategies across different thermal niches and taxa?, ISMEJ 2019 No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Hydrothermal vent fluids 16.96131294 144.8678188 1902722 3434 195 1 561 6 0.0 Metatranscriptome 3300046639 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_1_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046639 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 69089379 104684 4 1 29 0 Restricted 90.53 Metatranscriptome 3300010416 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS5_30_TP1_13H Marine Biological Laboratory 3300010416 Metatranscriptome Analysis CLC genomics wb7 released per JGI data release policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933 -130.014 581931 1535 53 2 177 6 0.0 Metatranscriptome 3300018543 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of freshwater lake microbial communities from Lake Tornetrask, Sweden - GS667_0p8 J. Craig Venter Institute (JCVI) 3300018543 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 68.355835 18.821667 4141802 13568 34 24 707 810 0.0 Metatranscriptome 3300005640 *Microbiome Permanent Draft Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_052 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005640 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Terrestrial Tundra Soil Organic layer Permafrost soil 68.6139 -149.3145 250663833 718972 360 2186 1619 5106 SRX2522020 Unrestricted 0.0 Metatranscriptome 3300004340 *Microbiome Permanent Draft Metatranscriptomics studies in sediment microbial communities from the mangroves in Sao Paulo, Brazil Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC4A 3300004340 Metatranscriptome Analysis IDBA released by JGI data releasing policy No Yes luc.g.cabral@gmail.com Luc?lia Cabral, Lucelia Cabral No Environmental Aquatic Intertidal zone Marine Mangrove sediment Mangrove sediment -23.8553 -46.1394 39295924 117548 1415 915 5668 2798 0.0 Metatranscriptome 3300031030 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Humus C2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031030 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ake.olson@slu.se; francis.martin@inrae.fr Ake Olson; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 418824960 1076490 1347 253 2962 687 SRX3345045 Unrestricted 0.0 Metatranscriptome 3300041688 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_355 MetaT AgResearch, New Zealand, Mosgeil 3300041688 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 20771039 43251 265 123 2225 285 0.0 Metatranscriptome 3300017055 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from North Sea in IMR 1/2 medium with 10nM Se, no NCl and Si, 16 C, 25 psu salinity and 660 ?mol photons light - Prymnesium polylepis UIO037 (MMETSP0286) National Center for Genome Resources 3300017055 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 59.0 10.45 23473013 39794 13 8 29 19 0.0 Metatranscriptome 3300010014 *Microbiome Permanent Draft Black Band Disease transitions Microbial communities of stony corals with Black-band disease (BBD) from Carrie Bow Cay Field Station, Belize; BBD Transitions coral #2 sample H2 University of Maryland 3300010014 Metatranscriptome Analysis IDBA-Tran v1.1.1 released per JGI data release policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified marine 16.80288 -88.08213 81186835 169892 2 5 17 37 0.0 Metatranscriptome 3300013064 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013064 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil corn rhizosphere 42.3948 -85.3738 4865871 11211 51 252 5194 1964 SRX4925354, SRX4925355 Unrestricted 0.0 Metatranscriptome 3300030667 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 1_T1E_ScyKB8 developmental time series (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030667 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 39358514 54542 8 13 266 366 SRX4645937 Unrestricted 0.0 Metatranscriptome 3300049695 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MT_030718 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049695 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 125315037 255145 10 7 281 33 Unrestricted 61.36 Metatranscriptome 3300033617 *Microbiome Permanent Draft Characterization of microbial community from North Pond CORK fluids Aquifer fluid microbial communities from North Pond CORKs, Mid-Atlantic Ridge, Atlantic Ocean - Hole 1383C Deep RNA SIP 12C Marine Biological Laboratory 3300033617 Metatranscriptome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Aquatic Oceanic Marine Crustal Fluids Aquifer fluid 22.8 -46.05 2786478 3337 3 1 1 6 0.0 Metatranscriptome 3300052447 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 113-S77Day7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052447 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 79349821 156278 42 1 128 19 Unrestricted 94.57 Metatranscriptome 3300010093 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_16_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010093 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 54902181 126779 117 695 9960 5519 Unrestricted 0.0 Metatranscriptome 3300008862 *Microbiome Permanent Draft Microbial communities from harbor seals stranded along the coast of California, USA Microbial communities from harbor seals stranded along the coast of California, USA - com3 Oregon State University 3300008862 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Brain Nervous system Unclassified Harbor seal brain 37.8592 -122.4853 419017448 769554 2 4 245 36 ERX1190723 0.0 Metatranscriptome 3300043277 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - FS5.Feb17.R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043277 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.5326 -110.7972 8-9 56863484 114824 50 1 481 3 SRX10105585 Unrestricted 27.71 Metatranscriptome 3300012376 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012376 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 120623702 281061 103 779 7285 8117 Unrestricted 0.0 Metatranscriptome 3300046243 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_2_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046243 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 57045188 91646 3 5 78 24 Restricted 313.38 Metatranscriptome 3300026397 *Microbiome Permanent Draft Enriched cultures of PCE-dechlorinating microbial communities from Ithaca, New York, USA Metatranscriptome of enriched cultures of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.SFe12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026397 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes rer26@cornell.edu Ruth Richardson No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified defined medium 42.4447 -76.485 71041590 107855 15 3 198 3 SRX4393310 Unrestricted 133.1 Metatranscriptome 3300036662 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - WOF_Exp2_150M_T0_031518 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036662 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 274010451 522203 329 112 668 1246 SRX8841777 Unrestricted 21.93 Metatranscriptome 3300011046 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 68 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011046 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 30206197 71044 108 392 8725 1944 Unrestricted 0.0 Metatranscriptome 3300055061 *Microbiome Permanent Draft Acid mine drainage microbial communities from coal mines in Pennsylvania and Ohio, United States Metatranscriptome of lab enriched acid mine drainage microbial communities from Akron, Ohio, USA - WFP1_0D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055061 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes shagun2260@gmail.com Shagun sharma No Environmental Aquatic Groundwater Freshwater Acid Mine Drainage acid mine drainage 41.07755 -81.511441 5228452 9757 28 24 97 151 Restricted 345.09 Metatranscriptome 3300046065 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-164 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046065 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4757 -64.2279 59576134 139226 647 39 1211 672 Unrestricted 17.79 Metatranscriptome 3300037777 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Metatranscriptome of coal bed microbial communities from the Powder River Basin, Montana, United States - T6FGPRNA (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300037777 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Aquatic Groundwater Deep subsurface Coalbed methane well water coal bed water 45.435 -106.392 56802616 107318 52 36 578 84 Unrestricted 0.0 Metatranscriptome 3300008859 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_3010 Massachusetts Institute of Technology 3300008859 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 7259734 24615 25 8 442 790 0.0 Metatranscriptome 3300017344 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Ligurian Sea in Artificial seawater as per Allen's formula, Enriched with Walnes's formula, 23 C, 32 psu salinity and 203 ?mol photons light - Protocruzia adherens Boccale (MMETSP0216) National Center for Genome Resources 3300017344 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 43.47558 10.33003 50712963 66059 20 3 33 9 0.0 Metatranscriptome 3300030822 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T21 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030822 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 26384490 50236 67 36 99 219 SRX5352260 Unrestricted 20.05 Metatranscriptome 3300046586 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - S1-R1-B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046586 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3555 19.0475 100416804 229085 252 162 617 650 Unrestricted 55.24 Metatranscriptome 3300036659 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp02_R55 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036659 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 251786022 510141 556 67 1242 1209 SRX8838900 Unrestricted 44.27 Metatranscriptome 3300061824 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 36_controlsoil_3_T0 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061824 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 68557013 183464 227 221 1364 1342 Unrestricted 111.28 Metatranscriptome 3300035291 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Antarctic Ocean - DFB2_09 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035291 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified Seawater -46.5954 142.0314 297934939 617463 1003 82 2076 1701 SRX8226808 Unrestricted 18.57 Metatranscriptome 3300046547 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_1_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046547 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 54840277 87770 2 1 10 0 Restricted 173.03 Metatranscriptome 3300023546 *Microbiome Permanent Draft Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 2-17_Aug_MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023546 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ottesen@uga.edu Elizabeth A. Ottesen No Environmental Aquatic Creek Freshwater Unclassified freshwater 33.9363 -83.5573 11295904 26307 122 520 2234 3141 SRX4480121 Unrestricted 267.22 Metatranscriptome 3300059609 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 227R_SD_T3_R4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059609 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 56983472 147041 147 175 675 1022 Unrestricted 102.01 Metatranscriptome 3300002874 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 68 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002874 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 9717423 27380 86 248 1465 1216 Unrestricted 0.0 Metatranscriptome 3300021929 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Metatranscriptome of freshwater microbial communities from pre-fracked creek in Pennsylvania, United States - DR:C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021929 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Unclassified freshwater 41.1553 -78.3938 102915342 237855 568 2271 9111 16283 SRX4009981 Unrestricted 0.0 Metatranscriptome 3300019118 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_025 - TARA_A100000396 (ERX1782223-ERR1711898) Canada's Michael Smith Genome Sciences Centre 3300019118 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.3991 19.3997 82466664 217063 64 7 272 299 0.0 Metatranscriptome 3300032392 *Microbiome Permanent Draft Extreme environments viral communities from various locations Metatranscriptome of cryopeg brine viral communities from Beaufort Sea near Barrow, Alaska, United States - CB4 2018 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032392 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Coastal Marine Unclassified cryopeg brine 71.2944 -156.7153 25897187 43254 7 1 25 15 SRX5809207 Unrestricted 0.0 Metatranscriptome 3300019150 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Eukaryotic communities of water from different depths collected during the Tara Oceans expedition - TARA_N000000616 (ERX1782105-ERR1711908) Genoscope 3300019150 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ocean water 313817805 856562 92 37 319 734 ERX1782448, ERX1086442, ERX1782105 0.0 Metatranscriptome 3300018525 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_051 - TARA_N000000189 (ERX1782203-ERR1712234) Canada's Michael Smith Genome Sciences Centre 3300018525 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -21.4994 54.3486 22289283 47824 3 14 2 85 0.0 Metatranscriptome 3300011087 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 55 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011087 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 120958770 268793 220 368 20768 2309 Unrestricted 0.0 Metatranscriptome 3300048976 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 75a (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048976 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.9364 -81.6542 693186 1253 1 3 18 39 Restricted 1012.13 Metatranscriptome 3300030993 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030993 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92030701 -106.94839471 326233058 754999 799 660 3108 2971 SRX8134326 Unrestricted 17.27 Metatranscriptome 3300008846 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_2054 Massachusetts Institute of Technology 3300008846 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 5316272 17986 14 6 329 714 0.0 Metatranscriptome 3300004502 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 27 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004502 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 43189929 138554 24713 1534 55380 3578 Unrestricted 0.0 Metatranscriptome 3300066324 *Microbiome Permanent Draft Seawater microbial communities from East Sound, Orcas Island, WA, USA Metatranscriptome of seawater eukaryotic communities from East Sound, Orcas Island, WA, USA - ORCAS_euks_20210529_02_17 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300066324 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes brookh@uw.edu Brook Nunn No Environmental Aquatic Strait Marine Unclassified Seawater 48.0 -122.0 75682098 175007 229 85 486 413 Unrestricted 67.87 Metatranscriptome 3300016729 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101402AT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016729 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 220224117 490920 227 199 5936 5097 SRX3780749 Unrestricted 0.0 Metatranscriptome 3300038162 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_OW2_C1_D1_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038162 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 115132503 237482 541 2252 6591 6877 SRX9390229 Unrestricted 122.61 Metatranscriptome 3300016917 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Long Island Sound grown at 10 C, 30 psu salinity and 354 ?mol photons light - Heterosigma akashiwo CCMP 452 (MMETSP0896_2) National Center for Genome Resources 3300016917 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 41.0 -73.0 11959657 21196 4 1 3 1 0.0 Metatranscriptome 3300011062 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 72 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011062 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 59992991 138436 148 346 10574 2212 Unrestricted 0.0 Metatranscriptome 3300030770 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T30 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030770 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 29542298 54623 58 19 122 103 SRX5352638 Unrestricted 17.7 Metatranscriptome 3300021897 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from Norwegian Sea - 20m ARK-7M ARK-7-2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021897 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 101683651 185015 47 30 122 141 SRX3337409 Unrestricted 0.0 Metatranscriptome 3300019202 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA5_MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019202 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 37.43 138.83 97205696 202711 26 41 11044 379 SRX4809117 Unrestricted 0.0 Metatranscriptome 3300011059 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 44 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011059 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 53966881 128069 115 806 10287 2421 Unrestricted 0.0 Metatranscriptome 3300038159 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_N3_C1_D6_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038159 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 58189717 118463 483 777 5983 2916 SRX9390232 Unrestricted 177.82 Metatranscriptome 3300035577 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - 16F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035577 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4202 16.665 192168301 402887 324 451 3619 1874 SRX8209318 Unrestricted 39.24 Metatranscriptome 3300008399 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - PM98.FECAL.14dpc CCME-COLORADO 3300008399 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 9301813 35951 101 1 1480 14 0.0 Metatranscriptome 3300019035 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_067 - TARA_N000000742 (ERX1789492-ERR1719296) Canada's Michael Smith Genome Sciences Centre 3300019035 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -32.12 17.6987 576555728 1850216 15 8 26 123 0.0 Metatranscriptome 3300027943 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0515-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300027943 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 147117268 251073 29 77 51 80 SRX5256577 Unrestricted 88.37 Metatranscriptome 3300019013 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_142 - TARA_N000003089 Canada's Michael Smith Genome Sciences Centre 3300019013 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 25.5593 -88.4126 550957813 1104466 0 54 2 247 0.0 Metatranscriptome 3300009285 *Microbiome Permanent Draft Microbial communities from groundwater in Rifle, Colorado, USA Microbial communities from groundwater in Rifle, Colorado, USA - 2A_0.1um Lawrence Berkeley National Laboratory 3300009285 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Groundwater Freshwater Unclassified Groundwater 39.32 -107.46 1605057346 4155925 465 3 2882 32 0.0 Metatranscriptome 3300049162 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_A_0_control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049162 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 174860151 419159 330 174 1897 1277 Unrestricted 59.06 Metatranscriptome 3300018632 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS848_ls3 J. Craig Venter Institute (JCVI) 3300018632 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 60426799 190157 52 20 106 173 0.0 Metatranscriptome 3300019094 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_080 - TARA_N000001489 (ERX1809466-ERR1739840) Canada's Michael Smith Genome Sciences Centre 3300019094 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -40.6241 -51.9229 61635626 151092 29 39 151 546 0.0 Metatranscriptome 3300030971 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030971 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7585 6.3578 762942325 2092591 9257 3045 19696 8929 SRX3346470 Unrestricted 0.0 Metatranscriptome 3300023562 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023562 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 49.0448 13.618 33713599 48127 24 35 305 297 SRX4454776 Unrestricted 22.48 Metatranscriptome 3300004134 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF248 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004134 Metatranscriptome Analysis megahit v. 0.2.0 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.531427 -72.189946 95495440 347176 4893 1278 16413 4324 SRX2014024 Unrestricted 0.0 Metatranscriptome 3300049159 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 90 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049159 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.5186 -82.6406 7094108 14189 2 7 31 23 Restricted 56.5 Metatranscriptome 3300023559 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023559 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 49.0431 13.617 30343171 47097 25 41 404 291 SRX4454983 Unrestricted 26.3 Metatranscriptome 3300030682 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Anb11 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030682 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 306592110 665864 116 143 536 488 SRX5245085 Unrestricted 0.0 Metatranscriptome 3300053648 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T2_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300053648 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 51783206 108383 20 4 169 22 Unrestricted 0.0 Metatranscriptome 3300057131 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Western Region, Iceland - Sphagnum teres C1_TE_ICE (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300057131 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 159417765 277205 108 92 260 389 Unrestricted 35.8 Metatranscriptome 3300032450 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day9_7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032450 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 31288158 53318 6 0 30 0 SRX6857988 Unrestricted 320.54 Metatranscriptome 3300017543 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Great South Bay, New York in HESNW medium w/o silica, 18 C, 30 psu salinity and 514 ?mol photons light - Akashiwo sanguinea CCCM 885 (MMETSP0223_2) (SRX549078-SRR1294464) National Center for Genome Resources 3300017543 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 40.6666 -73.25 60940 213 0 0 0 0 0.0 Metatranscriptome 3300006608 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS903_Marker113_RNA 3300006608 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.92274 -129.988104 3671772 12470 246 14 1321 83 0.0 Metatranscriptome 3300017130 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in NEPC medium w/o silicate, at 20 C, 30 psu salinity and 724 ?mol photons light - Thalassiosira minuscula CCMP 1093 (MMETSP0738) National Center for Genome Resources 3300017130 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 27681769 45592 40 14 67 19 0.0 Metatranscriptome 3300032418 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day5_8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032418 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 34058498 57822 17 2 58 3 SRX6857168 Unrestricted 148.28 Metatranscriptome 3300036160 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5WB15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036160 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 31780901 61679 397 1331 3983 4715 SRX8379531 Unrestricted 38.51 Metatranscriptome 3300031155 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_L6_0mM_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031155 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 10230814 17633 1 1 1 7 SRX6408392 Unrestricted 50.52 Metatranscriptome 3300009388 *Microbiome Permanent Draft Metatranscriptome sequencing of an Anaerobic Hexadecane-Degrading Microbial Consortia from University of California, San Diego, USA Metatranscriptome sequencing of an Anaerobic Hexadecane-Degrading Microbial Consortia from University of California, San Diego, USA - Hexadecane University of California, San Diego 3300009388 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Lab enrichment Anaerobic media Defined media Unclassified Enrichment culture 135262569 320572 11 0 206 2 0.0 Metatranscriptome 3300036502 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Omics13_19_20_030918 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036502 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 54225693 123771 84 52 211 673 SRX8834210 Unrestricted 135.89 Metatranscriptome 3300012753 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES038 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012753 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 95003798 198549 235 85 4361 5353 SRX3010521 Unrestricted 0.0 Metatranscriptome 3300017286 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Indian River Bay, Delaware, USA in L1 medium, 22 C, 34 psu salinity and 695 ?mol photons light - Prorocentrum minimum CCMP 2233 (MMETSP0267) National Center for Genome Resources 3300017286 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 38.59 -75.1 65814437 89605 3 1 6 1 0.0 Metatranscriptome 3300006355 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006355 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Intertidal zone Marine Estuary Aqueous 39.283 -75.3633 144756907 423451 10521 13762 33319 38271 SRX2522714 Unrestricted 0.0 Metatranscriptome 3300005387 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1900_B MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005387 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 10897164 34113 739 2 1749 11 SRX2521674, SRX2521675 Unrestricted 0.0 Metatranscriptome 3300050369 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T3_4 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050369 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 132595670 226679 13 13 42 43 Unrestricted 125.13 Metatranscriptome 3300024544 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Yuk_RepA_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024544 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 169927678 360489 90 286 1687 1783 SRX4547805 Unrestricted 28.62 Metatranscriptome 3300017247 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Sargasso Sea in L1 medium with NH4Cl, 20 C, 32 psu salinity and 516 ?mol photons light - Triceratium dubium CCMP 147 (MMETSP1175) National Center for Genome Resources 3300017247 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 30.0 -60.0 27344961 40499 5 9 8 15 0.0 Metatranscriptome 3300037660 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_N3_C1_D1_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037660 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 61014376 118811 478 2189 4949 6181 SRX9385111 Unrestricted 148.85 Metatranscriptome 3300022507 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-M (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022507 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 123490099 288397 521 623 12539 4092 SRX4402185 Unrestricted 0.0 Metatranscriptome 3300030653 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from Antarctic Ocean - PS103-29 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030653 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified marine -70.3658 -8.2821 1290956991 2207720 34 5 27 118 SRX5356531 Unrestricted 0.0 Metatranscriptome 3300010071 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_0_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010071 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 28745426 62685 56 521 4327 4654 Unrestricted 0.0 Metatranscriptome 3300010198 *Microbiome Permanent Draft Host-associated microbial communities from peat moss Sphagnum species from Minnesota, USA Peat moss associated microbial communities from Sphagnum species from Minnesota, USA - S1T2_Fd - Sphagnum magellanicum MT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010198 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes joel.kostka@biology.gatech.edu Joel Kostka No Host-associated Plants Unclassified Peat moss Unclassified Peat moss associated 47.5028 -93.4828 189674845 364557 176 419 1460 5061 SRX3007416 Unrestricted 0.0 Metatranscriptome 3300046470 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_28_Control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046470 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.166 -81.3634 100865676 244407 280 171 1477 896 Unrestricted 44.86 Metatranscriptome 3300017164 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in H/2 medium with NH4Cl, at 23 C, 35 psu salinity and 289 ?mol photons light - Guillardia theta CCMP 2712 (MMETSP0046_2) National Center for Genome Resources 3300017164 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 38485448 48439 2 11 2 5 0.0 Metatranscriptome 3300031327 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031327 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 29422266 57124 79 47 135 317 SRX5352257 Unrestricted 17.81 Metatranscriptome 3300012782 *Microbiome Permanent Draft Polar marine prokaryotic and eukaryotic communities from Antarctica during spring seasonal transition Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Arthur Harbor ice station, Antarctica - RNA30.ICE_1m.20151125 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012782 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bowmanjs@ldeo.columbia.edu Jeff Bowman Yes Environmental Aquatic Unclassified Marine Unclassified Polar marine -64.7711 -64.056 389851929 845764 859 337 6947 17427 SRX3379878 Unrestricted 0.0 Metatranscriptome 3300010912 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS6_30_TP1_13L Marine Biological Laboratory 3300010912 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 1510079 4197 233 5 570 19 0.0 Metatranscriptome 3300006715 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP1481 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006715 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -28.41 179.14 101278081 325897 1149 1218 3018 2553 SRX3299150 Unrestricted 0.0 Metatranscriptome 3300037695 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen9, Rep 3, Chloramphenicol (Eukaryote Community Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037695 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 36624715 30951 2 0 6 0 SRX8381555, SRX8381556 Unrestricted 0.0 Metatranscriptome 3300012394 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from Louisiana Shelf, Gulf of Mexico - GoM_2015_C6C_201_2m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012394 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 28.8679 -90.4764 189275177 382982 426 562 4415 13841 Unrestricted 0.0 Metatranscriptome 3300002650 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF119 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002650 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 4718495 12376 72 449 444 2531 SRX2014401 Unrestricted 0.0 Metatranscriptome 3300008033 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Puerto Morelos, Mexico - Siderastrea T B metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300008033 Metatranscriptome Analysis megahit v. 0.2.0 No Yes momedinamunoz@gmail.com Monica _ Medina, Medina Medina No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral host 21.0853 -87.0617 347045051 535198 209 152 610 480 SRX3362778 Unrestricted 0.0 Metatranscriptome 3300036532 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - WOF_Exp1_80M_T0_031018 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036532 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 181303603 387388 956 86 1990 1559 SRX8841755 Unrestricted 28.63 Metatranscriptome 3300016755 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/100 medium with amended seawater, at 20 C, 28 psu salinity and 266 ?mol photons light - Oxyrrhis marina CCMP 1795 (MMETSP0451_2) National Center for Genome Resources 3300016755 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 1485691 3128 0 0 1 0 0.0 Metatranscriptome 3300012749 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES066 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012749 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.041 -89.686 92327740 162201 28 50 413 1805 SRX3010861 Unrestricted 0.0 Metatranscriptome 3300035294 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Antarctic Ocean - DFB2_01 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035294 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified Seawater -46.5954 142.0314 242604855 494255 908 59 1776 1465 SRX8220654 Unrestricted 17.2 Metatranscriptome 3300035629 *Microbiome Permanent Draft Sediment microbial communities from Lake Washington near Medina, WA, United States Metatranscriptome of methane-enriched sediment microbial communities from Lake Washington, WA, United States - LO-FL-FA-2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035629 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment sediment 47.6215 -122.2558 51011932 88109 2 1 4 2 SRX8380048 Unrestricted 404.18 Metatranscriptome 3300032626 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow Y-2 switchgrass (Eukaryote Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032626 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 40.102108 -88.227299 71223989 135956 13 54 51 111 SRX5780880 Unrestricted 0.0 Metatranscriptome 3300006703 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP1200 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006703 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -30.1996 103.1843 79805544 240802 735 1132 2311 2685 SRX3325584 Unrestricted 0.0 Metatranscriptome 3300018587 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_080 - TARA_N000001485 (ERX1809474-ERR1739843) Canada's Michael Smith Genome Sciences Centre 3300018587 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -40.6241 -51.9229 33957725 110630 7 16 36 139 0.0 Metatranscriptome 3300003727 *Microbiome Permanent Draft Soil microbial communities from four geographically distinct crusts in the Colorado Plateau and Sonoran desert Soil microbial communities from Colorado Plateau and Sonoran desert - Soil Crust after wet up 3A (Custom Analysis) DOE Joint Genome Institute (JGI) 3300003727 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes elbrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Desert Soil Unclassified Soil 38.42 -109.4099 11003238 25220 418 215 1310 550 Unrestricted 0.0 Metatranscriptome 3300017100 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, at 5 C, 35 psu salinity and 561 ?mol photons light - Thalassiosira antarctica CCMP 982 (MMETSP0905) National Center for Genome Resources 3300017100 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 35798343 43126 43 1 66 1 0.0 Metatranscriptome 3300019073 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS683_0p1 J. Craig Venter Institute (JCVI) 3300019073 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 9630926 39497 8 4 244 335 0.0 Metatranscriptome 3300017559 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in f/2 medium with seawater, 14 C, 36 psu salinity and 110 ?mol photons light - Ditylum brightwellii GSO103 (MMETSP1002) (SRX549028-SRR1294414) National Center for Genome Resources 3300017559 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 49.654 -127.436 20580332 48911 37 10 79 19 0.0 Metatranscriptome 3300006270 *Microbiome Permanent Draft Prairie soil microbial communities from Kansas, USA, after rainfall Prairie soil microbial communities from Kansas, USA, after rainfall - K19 Oregon State University 3300006270 Metatranscriptome Analysis VELVET 1.2.10, combine 23, 27, 31 released per JGI data release policy No Yes lzeglin@ksu.edu Lydia Zeglin No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.1038 -96.6133 299171 1764 12 2 11 1 0.0 Metatranscriptome 3300011025 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 46 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011025 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 14871349 36461 36 97 2884 564 Unrestricted 0.0 Metatranscriptome 3300010435 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS5_55_TP2_12L Marine Biological Laboratory 3300010435 Metatranscriptome Analysis CLC genomics wb7 released per JGI data release policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933 -130.014 605722 1646 44 2 52 4 0.0 Metatranscriptome 3300022233 *Microbiome Permanent Draft Characterization of microbial community from Mariana Back Arc Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Illium_FS922_RNA-SIP 150_kmer Marine Biological Laboratory 3300022233 Metatranscriptome Analysis IDBA-UD 1.1.3 Trembath-Reichert et al. ?Active subseafloor microbial communities from Mariana back-arc venting fluids share metabolic strategies across different thermal niches and taxa?, ISMEJ 2019 No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent fluids 18.21359 144.70748 1111783 2158 23 0 112 2 0.0 Metatranscriptome 3300030911 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PO 2A (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030911 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 478504583 1269813 2007 483 3922 1755 SRX2753419 Unrestricted 0.0 Metatranscriptome 3300002871 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_135m_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002871 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 11219345 24930 26 16 227 197 Unrestricted 0.0 Metatranscriptome 3300032781 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_17JUL2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032781 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3941 -85.3741 129000722 211953 109 67 156 418 SRX7519750 Unrestricted 41.82 Metatranscriptome 3300052452 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 126-Pos ControlDay7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052452 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 178711505 336136 50 3 163 28 Unrestricted 104.49 Metatranscriptome 3300018546 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_136 - TARA_N000002959 (ERX1789637-ERR1719441) Canada's Michael Smith Genome Sciences Centre 3300018546 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 17.0854 -118.8913 17303028 44832 0 5 5 65 0.0 Metatranscriptome 3300050680 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae culture inoculated with mixed bacterial community from LLNL, Livermore, California, USA - f3_d2_A_S05 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050680 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 24101091 34043 3 0 4 2 Restricted 122.95 Metatranscriptome 3300031489 *Microbiome Permanent Draft Soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - STER_R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031489 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thb15@psu.edu Terrence Bell No Engineered Artificial ecosystem Surface biofilm Soil microcosm Unclassified soil 40.7997 -77.8629 13722610 19560 20 0 69 15 SRX5811521 Unrestricted 545.42 Metatranscriptome 3300056955 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Vasterbotten County, Sweden - Sphagnum lindbergii 16OTC_LI_DE (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056955 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.183 19.5578 316826955 663338 308 168 774 739 Unrestricted 44.15 Metatranscriptome 3300032037 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Metatranscriptome of bovine rumen microbial communities from UC Davis, California, United States - 1_2617_0518 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032037 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen 38.5357 -121.7593 431664228 854475 3 19 104 92 SRX5812528 Unrestricted 13.98 Metatranscriptome 3300036438 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen2, Rep 3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036438 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 107249203 146673 3 0 93 1 SRX8381937 Unrestricted 189.17 Metatranscriptome 3300049838 *Microbiome Permanent Draft Biofilm microbial communities of laboratory-scale, methanol-fed denitrifying cultures Lab-enriched, denitrifying biofilm microbial communities from a recirculating reactor in Laval, Quebec, Canada - Condition 8 Genome Quebec 3300049838 Metatranscriptome Analysis Trinity v. 2.9.1 No Yes richard.villemur@iaf.inrs.ca Richard Villemur No Engineered Bioreactor Unclassified Denitrification Unclassified Biofilm 45.54491579 -73.71990935 33206132 79468 81 15 265 31 0.0 Metatranscriptome 3300052469 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 120-S78Day28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052469 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 123889413 262317 38 5 118 44 Unrestricted 54.67 Metatranscriptome 3300030758 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A4_OS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300030758 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate/submediterranean forest 42.0 1.0 325596828 716721 433 312 6523 5000 SRX2999526 Unrestricted 0.0 Metatranscriptome 3300061821 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 33_cerealrye_2_T0 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061821 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 132682368 322074 214 223 1530 1372 Unrestricted 56.13 Metatranscriptome 3300048518 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_6_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048518 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 70093584 115947 4 0 23 0 Restricted 75.06 Metatranscriptome 3300030649 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 8_T1F_8DKB8 developmental time series (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030649 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 45765995 62624 26 43 337 366 SRX4645834 Unrestricted 0.0 Metatranscriptome 3300017341 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 15 C, 31 psu salinity and 422 ?mol photons light - Gymnodinium catenatum GC744 (MMETSP0784) National Center for Genome Resources 3300017341 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 91304105 111022 8 8 9 8 0.0 Metatranscriptome 3300010096 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_4_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010096 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 55665320 131534 171 692 15466 6148 Unrestricted 0.0 Metatranscriptome 3300016977 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of freshwater eukaryotic communities from unknown location in FSW medium, at 6 C, 21 psu salinity and 662 ?mol photons light - Aulacoseira subarctica CCAP 1002/5 (MMETSP1064) National Center for Genome Resources 3300016977 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 28216059 33386 17 1 16 2 0.0 Metatranscriptome 3300049125 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 88 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049125 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.5186 -82.6406 4540773 9184 1 6 33 34 Restricted 136.86 Metatranscriptome 3300048651 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Metatranscriptome of beaver colon microbial communities from Maple Ridge, British Columbia, Canada - B3_PC3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048651 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Unclassified colon 49.2552 -122.5085 402504216 767641 6 18 222 77 Restricted 70.09 Metatranscriptome 3300008015 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Puerto Morelos, Mexico - Siderastrea C A metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300008015 Metatranscriptome Analysis megahit v. 0.2.0 No Yes momedinamunoz@gmail.com Monica _ Medina, Medina Medina No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral host 21.0853 -87.0617 297346040 465462 203 238 800 796 SRX3362343 Unrestricted 0.0 Metatranscriptome 3300030710 *Microbiome Permanent Draft Soil microbial communities from Risofladan, Vaasa, Finland Metatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - TR-2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030710 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes eva.hogfors-ronnholm@novia.fi Eva Hogfors-Ronnholm Yes Environmental Terrestrial Coastal area Soil Acid sulfate soil soil 63.0472 21.7116 9451667 19070 77 17 632 55 SRX5356424 Unrestricted 82.07 Metatranscriptome 3300011290 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S15 NADW_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011290 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 38629010 90836 39 24 3826 886 SRX3787187 Unrestricted 0.0 Metatranscriptome 3300017819 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in ATCC 1651 MA medium w/o phosphatidylcholine, 4 C, 30 psu salinity and 140 ?mol photons light - Anophryoides haemophila AH6 (MMETSP1019) (SRX566756-SRR1328076) National Center for Genome Resources 3300017819 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes EAEloeFadrosh@lbl.gov Emiley Eloe-Fadrosh No Environmental Aquatic Unclassified Marine Unclassified marine 43.51667 -65.6 7843519 12708 118 7 260 37 0.0 Metatranscriptome 3300019005 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_148 - TARA_N000002119 (ERX1789730-ERR1719193) Canada's Michael Smith Genome Sciences Centre 3300019005 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 31.7432 -64.1967 753092055 1350558 0 82 5 281 0.0 Metatranscriptome 3300012373 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012373 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 113920028 263175 75 745 4189 5998 Unrestricted 0.0 Metatranscriptome 3300052737 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Weichs, Bavaria, Germany - PB8_MT_220218 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052737 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 48.39537892 11.44760761 29913105 63309 13 11 319 30 Unrestricted 0.0 Metatranscriptome 3300021342 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 12015 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021342 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.7468 -122.0193 446419506 1037943 394 224 33818 7373 SRX4010496 Unrestricted 0.0 Metatranscriptome 3300002678 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF126 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002678 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 13424740 39996 122 513 1159 2560 SRX2014416 Unrestricted 0.0 Metatranscriptome 3300031129 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T13 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031129 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 26287784 52124 68 53 103 218 SRX5352005 Unrestricted 25.75 Metatranscriptome 3300018799 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_124 - TARA_N000002039 (ERX1782418-ERR1711999) Canada's Michael Smith Genome Sciences Centre 3300018799 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -9.1504 -140.5216 118079260 420937 116 87 403 843 0.0 Metatranscriptome 3300019232 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT530_16_1Ra (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019232 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9231 -106.9513 168110959 409300 138 1042 7013 8392 SRX3915679 Unrestricted 0.0 Metatranscriptome 3300020114 *Microbiome Permanent Draft Metatranscriptome of freshwater microbial communities within cyanobacterial aggregates from lake Taihu, China Freshwater microbial communities within cyanobacterial aggregates from lake Taihu, China - 10_6_0:00 Beijing Novogene Bioinformatics Technology Co., Ltd 3300020114 Metatranscriptome Analysis Trinity v2.4 released by JGI data releasing policy No Yes hycai@niglas.ac.cn haiyuan cai No Environmental Aquatic Lake Freshwater Unclassified Freshwater 31.3 120.11 9942172 27849 47 11 23 192 0.0 Metatranscriptome 3300008685 *Microbiome Permanent Draft Food microbial communities from the fermentation process of Kimchi from South Korea Food microbial communities from the fermentation process of Kimchi from South Korea - J25 Chung-Ang Univiersity 3300008685 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Fermented vegetables Unclassified Fermented vegetables 7948318 19453 9 6 291 62 0.0 Metatranscriptome 3300011043 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 6 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011043 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 29040421 68898 113 184 7922 1021 Unrestricted 0.0 Metatranscriptome 3300046246 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_2_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046246 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 43785792 69665 6 35 90 129 Restricted 419.98 Metatranscriptome 3300042057 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Metatranscriptome of estuary water microbial communities from Narragansett Bay, Rhode Island, USA - E1_AmbB (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042057 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.9078 -71.5683 221795837 432757 194 121 386 603 SRX14871204 Unrestricted 35.04 Metatranscriptome 3300046583 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-83 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046583 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.447 -64.1642 76855256 184506 735 31 1100 438 Unrestricted 17.06 Metatranscriptome 3300013061 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - RNA 3rd pass 30_C BE-Lig MG (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013061 Metatranscriptome Analysis megahit v. 1.0.6 No Yes jmgladden@lbl.gov John Gladden No Environmental, Engineered Terrestrial, Solid waste Composting Soil, Mixed feedstock Commercial compost compost 37.83 -122.29 54774708 98766 12 22 127 2056 SRX4809046 Unrestricted 0.0 Metatranscriptome 3300004532 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 103_HOW12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004532 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 29030442 67377 119 10 509 19 SRX2780171 Unrestricted 0.0 Metatranscriptome 3300031061 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T19 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031061 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 25811753 50550 57 35 115 217 SRX5352189 Unrestricted 18.7 Metatranscriptome 3300052696 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T3_2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052696 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 88779122 163772 11 11 37 44 Unrestricted 0.0 Metatranscriptome 3300049530 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_A_2_drought (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049530 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 98731823 240640 222 150 1306 1021 Unrestricted 77.29 Metatranscriptome 3300046569 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - G3-R1-B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046569 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3549 19.0438 203471929 441626 147 373 1518 1633 Unrestricted 24.94 Metatranscriptome 3300004104 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF218 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004104 Metatranscriptome Analysis megahit v. 0.2.0 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.531427 -72.189946 180912461 607207 59 45 218 227 SRX2013929 Unrestricted 0.0 Metatranscriptome 3300018602 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_036 - TARA_N000000319 (ERX1782193-ERR1711945) Canada's Michael Smith Genome Sciences Centre 3300018602 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 20.8222 63.5133 53208056 128099 6 11 64 168 0.0 Metatranscriptome 3300009324 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from the North Atlantic ocean - ACM48 University of Georgia 3300009324 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 25148342 77801 29 52 117 164 0.0 Metatranscriptome 3300010888 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS6_55_TP2_13L Marine Biological Laboratory 3300010888 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 71368 188 29 5 65 11 0.0 Metatranscriptome 3300041909 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaT_extra_run AgResearch, New Zealand, Mosgeil 3300041909 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Unclassified Roots Unclassified White clover root -43.648506 172.343549 5096336 9425 231 343 884 636 0.0 Metatranscriptome 3300046552 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_3_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046552 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 77821530 117628 3 6 38 31 Restricted 136.82 Metatranscriptome 3300048973 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 62 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048973 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.6663 -82.0816 23184405 35262 43 24 75 150 Restricted 53.57 Metatranscriptome 3300030996 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Litter GP-3B (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030996 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr; dcullen@wisc.edu Francis M. Martin; Daniel Cullen No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 45.7589 -113.9119 568048185 1481900 4549 739 9304 1097 SRX3343334 Unrestricted 0.0 Metatranscriptome 3300030537 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cb7 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030537 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 127937210 311465 106 133 1088 700 SRX4547038 Unrestricted 0.0 Metatranscriptome 3300046287 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_5_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046287 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 84896690 138903 3 1 15 0 Restricted 169.8 Metatranscriptome 3300008843 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_2057 Massachusetts Institute of Technology 3300008843 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 464543 1413 0 0 81 150 0.0 Metatranscriptome 3300010074 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_24_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010074 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 25375899 61177 154 356 25814 3903 Unrestricted 0.0 Metatranscriptome 3300030598 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO747-VDE048SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030598 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr; fmartin@nancy.inra.fr Francis M. Martin; Francis M. MARTIN No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.296 -71.1763 354787449 747618 50 60 1294 404 SRX4391427 Unrestricted 0.0 Metatranscriptome 3300017161 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater and 400nM iron, 19 C, 35 psu salinity and 644 ?mol photons light - Thalassiosira weissflogii CCMP 1010 (MMETSP1407) National Center for Genome Resources 3300017161 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.0 -65.0 30894838 34040 2 1 2 1 0.0 Metatranscriptome 3300046262 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_3_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046262 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 29146894 53938 1 0 18 1 Restricted 299.67 Metatranscriptome 3300004497 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 129_HOW14 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004497 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 27600195 57521 117 5 509 6 SRX2780255 Unrestricted 0.0 Metatranscriptome 3300024541 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepC_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024541 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 154478094 317313 103 253 1030 1806 SRX4547755 Unrestricted 25.36 Metatranscriptome 3300052365 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_106 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052365 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 38600019 100215 135 133 1035 817 Unrestricted 171.4 Metatranscriptome 3300017602 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in ESM medium with SW802, 23 C, 35 psu salinity and 437 ?mol photons light - Bicosoecida sp. CB-2014 ms1 (MMETSP0115) (SRX548996-SRR1294382) National Center for Genome Resources 3300017602 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Beach/Shore marine 46.5105 -63.4856 8654803 12380 11 1 23 1 0.0 Metatranscriptome 3300012391 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_16_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012391 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 151733850 367600 81 587 3990 6032 Unrestricted 0.0 Metatranscriptome 3300003302 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome C0912_C49A8_35 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003302 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 35.7899 -122.3199 44775325 118117 117 19 465 658 SRX2555047 Unrestricted 0.0 Metatranscriptome 3300046259 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_2_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046259 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 39562964 73716 1 31 160 168 Restricted 153.87 Metatranscriptome 3300027946 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0670-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300027946 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 225940197 390975 27 44 15 46 SRX5253522 Unrestricted 80.95 Metatranscriptome 3300001207 *Microbiome Permanent Draft Contaminated soil microbial communities from Tipperary, Ireland, in a timber treatment facility Contaminated soil microbial communities from Tipperary, Ireland - cDNA isolated at day 31 University of Liverpool 3300001207 Metatranscriptome Analysis released per JGI data release policy No Yes mardiana.mohd-ashaari@ucdconnect.ie Mardiana Mohd Ashaari No Environmental Terrestrial Unclassified Soil Contaminated Contaminated soil 52.512199 -8.226278 0 0 0 0 0 0 0.0 Metatranscriptome 3300052390 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_19B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052390 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Bulk soil Soil 38.992973 -123.067448 191769902 501992 82 160 1551 879 Unrestricted 55.95 Metatranscriptome 3300002776 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_150m_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002776 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 78795995 168857 175 106 764 982 Unrestricted 0.0 Metatranscriptome 3300017029 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 20 C, 35 psu salinity and 438 ?mol photons light - Hemiselmis virescens PCC157 (MMETSP1356) National Center for Genome Resources 3300017029 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 23274782 37274 19 13 40 16 0.0 Metatranscriptome 3300018819 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_137 - TARA_N000002940 (ERX1789719-ERR1719288) Canada's Michael Smith Genome Sciences Centre 3300018819 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 14.1987 -116.7164 195747929 449082 0 6 7 50 0.0 Metatranscriptome 3300019016 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_038 - TARA_N000000045 (ERX1789509-ERR1719322) Canada's Michael Smith Genome Sciences Centre 3300019016 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 19.0393 64.4913 544228921 1133728 6 30 21 242 0.0 Metatranscriptome 3300012409 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_16_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012409 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 237383977 570652 69 704 6152 6229 Unrestricted 0.0 Metatranscriptome 3300057134 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Western Region, Iceland - Sphagnum magellanicum C2_MAG_ICE (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300057134 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 126896137 255965 115 96 292 428 Unrestricted 50.4 Metatranscriptome 3300059639 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 3R_CW_T1_R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059639 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 262987554 657631 547 407 2649 2483 Unrestricted 65.18 Metatranscriptome 3300048991 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048991 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.8393 -82.5215 26667278 58278 101 111 258 530 Restricted 45.32 Metatranscriptome 3300006443 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling - Hofmockel_1000192-3 ISU MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006443 Metatranscriptome Analysis megahit v. 0.2.0 No Yes khof@iastate.edu, kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Agricultural land Soil Unclassified Enriched soil aggregate 42.0266187 -93.6486594 47303607 111194 216 181 1125 270 SRX3195506 Unrestricted 0.0 Metatranscriptome 3300047337 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_7_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047337 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 18796959 34557 1 0 37 1 Restricted 49.37 Metatranscriptome 3300008579 *Microbiome Permanent Draft Microbial communities of corn and soybean rhizosphere soil from Ohio, USA Microbial communities of corn rhizosphere soil from Ohio, USA - Corn_Control_2b Auburn University 3300008579 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Plants Rhizosphere Roots Soil Rhisosphere soil 6112402 20649 466 210 10879 2035 SRX1078303 0.0 Metatranscriptome 3300031457 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T11 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031457 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 69441646 132615 43 25 72 172 SRX5794231 Unrestricted 21.08 Metatranscriptome 3300019091 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_078 - TARA_N000001510 (ERX1782237-ERR1711876) Canada's Michael Smith Genome Sciences Centre 3300019091 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -30.1872 -43.2834 56611807 134750 14 28 74 303 0.0 Metatranscriptome 3300030974 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA8 SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030974 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7184 6.3471 662443068 1850059 7167 2559 14306 7046 SRX3345470 Unrestricted 0.0 Metatranscriptome 3300017546 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in ATCC 1651 MA medium w/o phosphatidylcholine, 4 C, 30 psu salinity and 145 ?mol photons light - Anophryoides haemophila AH6 (MMETSP1018) (SRX549048-SRR1294434) National Center for Genome Resources 3300017546 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 43.51667 -65.6 1526170 2578 0 2 1 2 0.0 Metatranscriptome 3300019178 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Soil microbial communities from Bohemian Forest, Czech Republic - CSU1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019178 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 49.043 13.6183 11487470 24687 9 235 356 1180 SRX3937176 Unrestricted 0.0 Metatranscriptome 3300010107 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_8_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010107 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 65816168 154185 31 335 4414 3405 Unrestricted 0.0 Metatranscriptome 3300030865 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E6_X_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030865 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 440933688 1383275 429 336 901 804 SRX3341741 Unrestricted 0.0 Metatranscriptome 3300022598 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL C1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022598 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes momedinamunoz@gmail.com Medina Medina No Host-associated Invertebrates Coral Cnidaria Unclassified coral 9.1956 -82.1254 209025918 291811 130 159 390 1529 SRX3998424 Unrestricted 0.0 Metatranscriptome 3300041769 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_15 MetaT AgResearch, New Zealand, Mosgeil 3300041769 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 48657466 105351 156 50 1314 151 0.0 Metatranscriptome 3300007197 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_T0_5L (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007197 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 68761870 228301 7768 9109 23971 23495 SRX2522144 Unrestricted 0.0 Metatranscriptome 3300032728 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Plim7_22May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032728 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 940284261 1604152 9 4 26 149 SRX6411379 Unrestricted 0.0 Metatranscriptome 3300036497 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Omics06_030518 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036497 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 178402268 391854 703 83 1561 1707 SRX8834158 Unrestricted 28.55 Metatranscriptome 3300034185 *Microbiome Permanent Draft FORHOT Natural soil warming experiment in Iceland Soil microbial communities from grassland in Hveragerdi, Iceland - GN1-E University of Vienna 3300034185 Metatranscriptome Analysis rnaSPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes craig.herbold@microbial-ecology.net Craig Herbold No Environmental Terrestrial Unclassified Soil Grasslands Soil 64.025 -21.205 1797086046 7309917 224768 12052 779067 67264 0.0 Metatranscriptome 3300030890 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T29 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030890 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 52993535 99001 54 43 65 208 SRX5794603 Unrestricted 21.13 Metatranscriptome 3300004131 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF232 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004131 Metatranscriptome Analysis megahit v. 0.2.0 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.531427 -72.189946 61443903 224789 3430 707 12259 2527 SRX2014018 Unrestricted 0.0 Metatranscriptome 3300018948 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_085 - TARA_N000001040 (ERX1809757-ERR1740124) Canada's Michael Smith Genome Sciences Centre 3300018948 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -62.0773 -49.4534 404001219 692595 9 7 14 60 0.0 Metatranscriptome 3300008825 *Microbiome Permanent Draft Microbial communities from mice foregut in Vienna, Austria Microbial communities from mice foregut in Vienna, Austria - lumen_for_2 University of Vienna 3300008825 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Stomach Digestive system Forestomach Foregut of mice 13608964 55950 257 4 2533 33 SRX326449 0.0 Metatranscriptome 3300008006 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Puerto Morelos, Mexico - Siderastrea T A metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300008006 Metatranscriptome Analysis megahit v. 0.2.0 No Yes momedinamunoz@gmail.com Monica _ Medina, Medina Medina No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral host 21.0853 -87.0617 294144503 440107 203 231 693 810 SRX3362776 Unrestricted 0.0 Metatranscriptome 3300017283 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from North Sea in IMR 1/2 medium with 10nM Se, no NCl and Si, 16 C, 25 psu salinity and 308 ?mol photons light - Chrysochromulina rotalis UIO044 (MMETSP0287) National Center for Genome Resources 3300017283 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 58.11 9.06 37998072 49122 8 15 18 37 0.0 Metatranscriptome 3300041752 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_490 MetaT AgResearch, New Zealand, Mosgeil 3300041752 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 6949200 14934 227 221 1153 397 0.0 Metatranscriptome 3300012756 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Croche, Canada - C_130709_E_mt (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012756 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.8319 -72.5 115144710 243759 279 167 1431 4422 SRX3015162 Unrestricted 0.0 Metatranscriptome 3300050386 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T1_3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050386 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 320088111 518241 23 22 98 92 Unrestricted 66.42 Metatranscriptome 3300037717 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of photosynthetic mat microbial communities from Mushroom Spring, YNP, Wyoming, United States - 20090730 0500 sample R7cd (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037717 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 77741230 180672 1 0 60 0 SRX9378926 Unrestricted 240.42 Metatranscriptome 3300017269 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Sri Lanka in FSW medium with nutritional yeast, at 18 C, 36 psu salinity and 408 ?mol photons light - Neobodo designis CCAP 1951/1 (MMETSP1114) National Center for Genome Resources 3300017269 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 37229066 47667 7 5 12 7 0.0 Metatranscriptome 3300018562 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_022 - TARA_A100000700 (ERX1782139-ERR1712148) Canada's Michael Smith Genome Sciences Centre 3300018562 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.8607 17.4105 28186267 54511 1 5 4 34 0.0 Metatranscriptome 3300026440 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0932-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026440 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 155596099 284054 35 38 38 68 SRX4796406 Unrestricted 68.37 Metatranscriptome 3300006697 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP0895 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006697 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -33.56 39.88 77101522 215646 3673 3574 8849 9250 SRX3299172 Unrestricted 0.0 Metatranscriptome 3300030656 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 13_T1E_3DEL1 developmental time series (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030656 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 56844111 73731 20 25 420 415 SRX4646341 Unrestricted 0.0 Metatranscriptome 3300006425 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006425 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 300219748 959729 4833 4289 15107 12032 SRX3195871 Unrestricted 0.0 Metatranscriptome 3300018559 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS694_0p8 J. Craig Venter Institute (JCVI) 3300018559 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 8799673 42075 9 15 86 242 0.0 Metatranscriptome 3300017252 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Northern Baffin Bay in L1 medium with seawater and antibiotics, 6 C, 36 psu salinity and 388 ?mol photons light - unclassified eukaryote CCMP 2098 (MMETSP0990) National Center for Genome Resources 3300017252 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 76.285 -73.0575 40531344 65909 15 18 7 37 0.0 Metatranscriptome 3300031000 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Mineral C1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031000 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr; ake.olson@slu.se Francis M. Martin; Ake Olson No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 396189569 1020260 3287 726 5768 1314 SRX3345098 Unrestricted 0.0 Metatranscriptome 3300046151 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-88 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046151 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4413 -64.1645 72203845 172549 687 39 1280 403 Unrestricted 25.9 Metatranscriptome 3300046609 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-104 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046609 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4426 -64.2061 72438018 168201 791 34 1320 495 Unrestricted 19.47 Metatranscriptome 3300016868 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in Aquil medium, 14 C, 21 psu salinity and 652 ?mol photons light - Pseudo-nitzschia heimii UNC1101 (MMETSP1423) National Center for Genome Resources 3300016868 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 27010419 26797 6 1 4 1 0.0 Metatranscriptome 3300047412 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81956c40-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047412 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 457086385 1128738 408 283 2440 1839 Unrestricted 32.81 Metatranscriptome 3300032725 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Shad8_24May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032725 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 556016266 985155 9 2 31 117 SRX6411383 Unrestricted 0.0 Metatranscriptome 3300041887 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_490 MetaT AgResearch, New Zealand, Mosgeil 3300041887 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 34220097 70250 201 149 1533 382 0.0 Metatranscriptome 3300026409 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepC_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026409 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 100992489 199091 95 89 450 519 SRX4547808 Unrestricted 19.32 Metatranscriptome 3300011081 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 60 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011081 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 100509530 234683 207 413 15969 3048 Unrestricted 0.0 Metatranscriptome 3300018945 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_100 - TARA_N000001608 (ERX1789687-ERR1719388) Canada's Michael Smith Genome Sciences Centre 3300018945 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -13.0023 -95.9759 284022383 672879 9 14 37 128 0.0 Metatranscriptome 3300003724 *Microbiome Permanent Draft Soil microbial communities from four geographically distinct crusts in the Colorado Plateau and Sonoran desert Soil microbial communities from Colorado Plateau and Sonoran desert - Soil Crust after wet up 2B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003724 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes elbrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Desert Soil Unclassified Soil 38.42 -109.4099 7414697 19717 495 222 1551 557 Unrestricted 0.0 Metatranscriptome 3300008828 *Microbiome Permanent Draft Microbial communities of mouse gut induced with colitis from Vienna, Austria Microbial communities of mouse gut induced with colitis from Vienna, Austria - 9963_ATGCT University of Vienna 3300008828 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Stomach Digestive system Forestomach Foregut of mice 24599702 85975 240 1 1846 17 SRX326430 0.0 Metatranscriptome 3300018584 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_110 - TARA_N000001758 (ERX1789699-ERR1719170) Canada's Michael Smith Genome Sciences Centre 3300018584 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -1.9778 -84.5992 34833964 87727 1 15 2 142 0.0 Metatranscriptome 3300046541 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_1_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046541 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 31638465 49195 1 0 13 0 Restricted 230.51 Metatranscriptome 3300046640 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_1_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046640 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 46995129 70824 1 0 14 1 Restricted 114.28 Metatranscriptome 3300043903 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA48b (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043903 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Unclassified Soil Unclassified soil 35.7877 -78.6442 53716572 125244 160 303 1565 1962 Unrestricted 29.3 Metatranscriptome 3300035297 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R1103M20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035297 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0386 47394532 91796 246 207 5596 795 SRX8235709 Unrestricted 61.98 Metatranscriptome 3300041401 *Microbiome Permanent Draft Diffuse flow microbial communities from hydrothermal vent near Loihi Seamount, Hawaii, USA Diffuse flow microbial community from hydrothermal vent near Loihi Seamount, Hawaii, USA - MH3013C5 Marine Biological Laboratory 3300041401 Metatranscriptome Analysis IDBA-UD v. 1.1.3 released by JGI data releasing policy No Yes asmith@simons-rock.edu Amy Smith No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse Flow 19.42 -155.28 635.0 3997633 5111 0 0 0 0 0.0 Metatranscriptome 3300051596 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 48_50_10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051596 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 49414151 134654 168 158 1159 964 Unrestricted 114.02 Metatranscriptome 3300034676 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034676 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 362044275 853511 357 1270 4119 5830 SRX7520484, SRX9093933 Unrestricted 0.0 Metatranscriptome 3300030868 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E4_R_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030868 Metatranscriptome Analysis MEGAHIT v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 140874054 446551 383 308 795 823 SRX3195625, SRX3341219 Unrestricted 0.0 Metatranscriptome 3300022595 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL T2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022595 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes momedinamunoz@gmail.com Medina Medina No Host-associated Invertebrates Coral Cnidaria Unclassified coral 9.1956 -82.1254 172700614 256637 118 223 1595 2350 SRX3998567 Unrestricted 0.0 Metatranscriptome 3300031049 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Mineral C2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031049 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ake.olson@slu.se; fmartin1954@me.com Ake Olson; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 460043295 1261663 3215 557 5747 1088 SRX3345111 Unrestricted 0.0 Metatranscriptome 3300013049 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Organic Plus compost microbial communities from Emeryville, California, USA - RNA 5th pass 30_C BE-Lig OP (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013049 Metatranscriptome Analysis megahit v. 1.0.6 No Yes jmgladden@lbl.gov John Gladden No Environmental, Engineered Terrestrial, Solid waste Composting Soil, Mixed feedstock Commercial compost compost 37.83 -122.29 30750883 59159 1 5 106 184 SRX3902088 Unrestricted 0.0 Metatranscriptome 3300021266 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.458 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021266 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.302 -123.036 32015621 75234 445 667 5331 5594 SRX4016660 Unrestricted 0.0 Metatranscriptome 3300016974 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in ESM medium, 20 C, 35 psu salinity and 316 ?mol photons light - Lotharella globosa CCCM 811 (MMETSP0112_2) National Center for Genome Resources 3300016974 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 13.4 144.7 19658869 24467 22 4 41 2 0.0 Metatranscriptome 3300035439 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Antarctic Ocean - DFB2_02 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035439 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified Seawater -46.5954 142.0314 412095733 830561 776 59 1508 1330 SRX8221132 Unrestricted 19.05 Metatranscriptome 3300037771 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - F19MarD (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037771 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.423 16.6683 19246730 34775 69 315 409 1233 SRX9166056 Unrestricted 73.23 Metatranscriptome 3300021910 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-87M (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021910 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 122134090 207360 37 34 79 129 SRX5295540 Unrestricted 0.0 Metatranscriptome 3300032436 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day5_7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032436 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 37358510 60971 7 0 41 2 SRX6857167 Unrestricted 191.59 Metatranscriptome 3300021351 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.637 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021351 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.313 -123.997 670160512 1633910 20 5 597 50 SRX4018164 Unrestricted 0.0 Metatranscriptome 3300017156 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in modified f/2 medium with seawater, 3 C, 33.6 psu salinity and 358 ?mol photons light - Corethron pennatum L29A3 (MMETSP0171) National Center for Genome Resources 3300017156 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -47.33333 -15.65 37235779 47648 8 4 6 8 0.0 Metatranscriptome 3300041399 *Microbiome Permanent Draft Diffuse flow microbial communities from hydrothermal vent near Loihi Seamount, Hawaii, USA Diffuse flow microbial community from hydrothermal vent near Loihi Seamount, Hawaii, USA - MH5512C9 Marine Biological Laboratory 3300041399 Metatranscriptome Analysis IDBA-UD v. 1.1.3 released by JGI data releasing policy No Yes asmith@simons-rock.edu Amy Smith No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse Flow 19.42 -155.28 635.0 2530518 3770 0 0 0 0 0.0 Metatranscriptome 3300036107 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen9, Rep 1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036107 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 57009279 87396 2 0 54 0 SRX8382714 Unrestricted 43.29 Metatranscriptome 3300016865 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine sediment eukaryotic communities from Great South Bay, New York in artificial seawater with 0.125% Artemia detritus and 0.8% agar, 23 C, 25 psu salinity and 172 ?mol photons light - Aplanochytrium sp. PBS07 (MMETSP0957) National Center for Genome Resources 3300016865 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Sediment marine sediment 40.93 -72.5 13346706 16371 12 8 23 7 0.0 Metatranscriptome 3300023680 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023680 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 49.044 13.617 20943922 32053 8 11 366 185 SRX5243275, SRX4454982 Unrestricted 0.0 Metatranscriptome 3300004476 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004476 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 206867413 551360 7628 3289 29477 7161 Unrestricted 0.0 Metatranscriptome 3300021873 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S2 C1 B8 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021873 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 31.220175 -14.869926 22395277 66866 163 80 397 332 SRX5204100 Unrestricted 0.0 Metatranscriptome 3300035593 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - May F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035593 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4202 16.665 181669827 370711 459 489 3367 2378 SRX8210229 Unrestricted 43.99 Metatranscriptome 3300026391 *Microbiome Permanent Draft Enriched cultures of PCE-dechlorinating microbial communities from Ithaca, New York, USA Metatranscriptome of enriched culture of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026391 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes rer26@cornell.edu Ruth Richardson No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified defined medium 42.4447 -76.485 79464087 122891 10 4 188 8 SRX4393183 Unrestricted 114.73 Metatranscriptome 3300016890 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in enriched f/2 medium with seawater, 16 C, 35 psu salinity and 403 ?mol photons light - Pseudo-nitzschia fraudulenta WWA7 (MMETSP0852) National Center for Genome Resources 3300016890 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 34.0847 -119.05 23700963 28445 33 4 52 6 0.0 Metatranscriptome 3300017369 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from English Channel in K medium, 14 C, 32 psu salinity and 740 ?mol photons light - Florenciella parvula CCMP 2471 (MMETSP1344) National Center for Genome Resources 3300017369 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 49.0 -4.0 52471416 84272 35 6 86 11 0.0 Metatranscriptome 3300030560 *Microbiome Permanent Draft Metatranscriptome of decayed wood fungal communities from Pinus contorta in National Forests from Montana, United States Metatranscriptome of decayed wood fungal communities from Pinus contorta in Bitterroot National Forest, Montana, United States - GP2-2E (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030560 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes dcullen@wisc.edu Daniel Cullen No Host-associated Plants Stem Phyllosphere Wood decay decayed wood 45.755 -113.9106 208823466 384667 30 10 45 79 SRX4804153 Unrestricted 0.0 Metatranscriptome 3300030661 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 29_T1E_3236KB8 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030661 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 94287667 108899 0 8 18 424 SRX4646393 Unrestricted 0.0 Metatranscriptome 3300017070 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Arabian Sea in L1 medium with NH4Cl, 20 C, 32 psu salinity and 478 ?mol photons light - Phaeocystis sp. CCMP2710 (MMETSP1162) National Center for Genome Resources 3300017070 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 23.5643 58.853 20552455 30701 12 2 13 2 0.0 Metatranscriptome 3300019103 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_082 - TARA_N000001384 (ERX1782358-ERR1712021) Canada's Michael Smith Genome Sciences Centre 3300019103 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -47.2007 -57.9446 118696998 268892 92 12 181 225 0.0 Metatranscriptome 3300008786 *Microbiome Permanent Draft Microbial communities from wetland soil in Czech Republic Microbial communities from wetland soil in Czech Republic - M3_cDNA Friedrich Schiller University of Jena 3300008786 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Terrestrial Wetlands Soil Unclassified Wetland soil 50.14667 12.45083 96789886 450742 1106 134 15262 1183 0.0 Metatranscriptome 3300045462 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P24SSC2_190915_f (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300045462 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 118847615 298127 172 309 1471 1504 SRX20650991 Unrestricted 134.5 Metatranscriptome 3300052441 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 37-S49Day7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052441 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 148613088 291830 36 2 127 15 Unrestricted 98.96 Metatranscriptome 3300031388 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_D6_8mM_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031388 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 14879567 23514 0 0 1 8 SRX6408123 Unrestricted 41.69 Metatranscriptome 3300020095 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 2.7-0.2um, replicate a, metaT Georgia Genomics Facility 3300020095 Metatranscriptome Analysis Trinity 2.06 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 17257866 48739 4849 396 10999 889 0.0 Metatranscriptome 3300030595 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO135-VCO083SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030595 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2469 -71.169 601913558 1289766 148 134 2634 1497 SRX4011290 Unrestricted 0.0 Metatranscriptome 3300017352 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from English Channel in Marine Media, 18 C, 36 psu salinity and 462 ?mol photons light - Haptolina brevifila UTEX LB 985 (MMETSP1094) National Center for Genome Resources 3300017352 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 49.35 4.9 46806339 71591 12 7 22 11 0.0 Metatranscriptome 3300018923 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_093 - TARA_N000001123 (ERX1789560-ERR1719496) Canada's Michael Smith Genome Sciences Centre 3300018923 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -33.9477 -73.0635 308613571 801916 1 27 8 130 0.0 Metatranscriptome 3300046166 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Metatranscriptome of soil microbial communities from peatland in Alberta, Canada - SB-09-sedgy 0-10 cm (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046166 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4741 -114.8678 11643511 23460 467 170 1091 882 Unrestricted 251.98 Metatranscriptome 3300020117 *Microbiome Permanent Draft Metatranscriptome of freshwater microbial communities within cyanobacterial aggregates from lake Taihu, China Freshwater microbial communities within cyanobacterial aggregates from lake Taihu, China - 10_3_12:00 Beijing Novogene Bioinformatics Technology Co., Ltd 3300020117 Metatranscriptome Analysis Trinity 2.4 released by JGI data releasing policy No Yes hycai@niglas.ac.cn haiyuan cai No Environmental Aquatic Lake Freshwater Unclassified freshwater 31.3 120.11 30431402 86665 118 41 62 482 0.0 Metatranscriptome 3300045459 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P15SSC1_191107_f (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300045459 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 17103329 39287 29 182 1787 978 SRX20650866 Unrestricted 651.42 Metatranscriptome 3300027053 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0511-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300027053 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 160041186 280819 79 77 12 68 SRX5252256 Unrestricted 119.11 Metatranscriptome 3300052734 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MT_030718 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052734 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 15421684 36009 21 5 877 12 Unrestricted 0.0 Metatranscriptome 3300032743 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Shad10_24May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032743 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 972177742 1645674 7 7 24 137 SRX6411417 Unrestricted 0.0 Metatranscriptome 3300052368 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_134 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052368 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 58094978 154408 109 109 894 656 Unrestricted 151.28 Metatranscriptome 3300010131 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_11_14_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010131 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment Wetland 41.2239 -82.3039 108712964 199349 419 1226 28610 9939 SRX2525133 Unrestricted 0.0 Metatranscriptome 3300046284 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_5_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046284 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 120073215 194951 1 1 23 3 Restricted 101.16 Metatranscriptome 3300030534 *Microbiome Permanent Draft Metatranscriptome of decayed wood fungal communities from Pinus contorta in National Forests from Montana, United States Metatranscriptome of decayed wood fungal communities from Pinus contorta in Tenderfoot Creek Experimental Forest, Montana, United States - TCEF2-3S (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030534 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes dcullen@wisc.edu Daniel Cullen No Host-associated Plants Stem Phyllosphere Wood decay decayed wood 46.9233 -110.8694 78554183 156753 14 6 17 26 SRX4804552 Unrestricted 0.0 Metatranscriptome 3300028110 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 43R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028110 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 269176314 527914 162 29 206 363 SRX5172110 Unrestricted 26.71 Metatranscriptome 3300009327 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from the North Atlantic ocean - ACM30 University of Georgia 3300009327 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 30311239 88786 45 42 119 145 0.0 Metatranscriptome 3300028158 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0943-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028158 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 120518205 200869 29 12 7 99 SRX5244908 Unrestricted 45.72 Metatranscriptome 3300038289 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_OW2_C1_D1_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038289 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 67053699 124891 611 2452 6679 6831 SRX9391583 Unrestricted 130.71 Metatranscriptome 3300043830 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043830 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Unclassified Soil Unclassified soil 35.7877 -78.6442 124355774 271051 320 426 2360 2729 Unrestricted 37.61 Metatranscriptome 3300002589 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS903_30_13H 3300002589 Metatranscriptome Analysis released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 2055092 5267 123 4 112 9 0.0 Metatranscriptome 3300000348 *Microbiome Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Acidic sulfate chloride spring microbial streamer communities from Grendel Spring, Yellowstone National Park, USA - T=76-80 DOE Joint Genome Institute (JGI) 3300000348 Metatranscriptome Analysis Yes Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Unclassified Non-marine Saline and Alkaline Unclassified Acidic sulfate chloride spring 44.7230812 -110.7095749 3.4 37662016 83612 21 0 33 0 0.0 Metatranscriptome 3300005243 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0900_T MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005243 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 61065283 147298 55 0 265 0 SRX2521483, SRX2521484 Unrestricted 0.0 Metatranscriptome 3300012761 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Simoncouche, Canada - S_130826_M_mt (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012761 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.2311 -71.2508 116715536 255224 567 338 6985 7674 SRX3015298 Unrestricted 0.0 Metatranscriptome 3300012934 *Microbiome Permanent Draft Processed tobacco microbial communities from Domestic Moist Snuff USA Processed tobacco microbial communities from Atlanta, GA, USA - domestic moist snuff M9 Centers for Disease Control and Prevention (CDC), USA 3300012934 Metatranscriptome Analysis bbmerge v8.92 released by JGI data releasing policy No Yes wyu3@cdc.gov Robert E. Tyx No Engineered Food production Unclassified Unclassified Unclassified Processed tobacco 33.881 -84.294 2401563199 10404203 3550824 2818 6675129 10032 0.0 Metatranscriptome 3300051610 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 168_50_4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051610 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 44418056 116610 432 345 3083 2030 Unrestricted 82.83 Metatranscriptome 3300003683 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_54_BLW_10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003683 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 66886591 166008 149 62 323 823 SRX2570589 Unrestricted 0.0 Metatranscriptome 3300066463 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Metatranscriptome of woodchip biofilm microbial communities from lab scale WBRs in New York, USA - hf_drw_p2_t0_h0_prok (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300066463 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 58539458 146341 107 97 1058 545 Unrestricted 0.0 Metatranscriptome 3300017383 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, low N, at 24 C, 32 psu salinity and 589 ?mol photons light - Alexandrium monilatum CCMP 3105 (MMETSP0095) National Center for Genome Resources 3300017383 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 75180662 97652 20 2 27 3 0.0 Metatranscriptome 3300052760 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052760 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 193776066 492974 82 127 1038 823 Unrestricted 38.59 Metatranscriptome 3300025745 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_0h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300025745 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 76285575 161285 28 54 181 400 SRX4547621 Unrestricted 26.16 Metatranscriptome 3300005720 *Microbiome Permanent Draft Termite hindgut microbial communities from Amitermes wheeleri in the Arizona desert and from Nasutitermes corniger in Florida, USA Nasutitermes corniger hindgut microbial communities from Florida, USA - 2 DOE Joint Genome Institute (JGI) 3300005720 Metatranscriptome Analysis Velvet, Newbler, Phrap Yes Yes phugenholtz@lbl.gov Phil Hugenholtz Yes 23593407 Host-associated Arthropoda: Insects Hindgut Digestive system Paunch/P3 segment Termite hindgut 26.135833 -80.129444 1742900 5717 249 20 895 39 0.0 Metatranscriptome 3300019280 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071401AT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019280 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 443824278 986822 154 492 1311 3870 SRX3921397 Unrestricted 0.0 Metatranscriptome 3300049553 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C24_A_7_control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049553 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 48403789 116668 105 81 513 498 Unrestricted 233.77 Metatranscriptome 3300019008 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_111 - TARA_N000001826 (ERX1789684-ERR1719447) Canada's Michael Smith Genome Sciences Centre 3300019008 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -16.9554 -100.6911 645323636 1357507 0 41 4 219 0.0 Metatranscriptome 3300046142 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-177 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046142 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4963 -64.2287 57319235 141575 554 26 999 293 Unrestricted 25.83 Metatranscriptome 3300002675 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF122 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002675 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 12441659 36855 84 547 1086 2483 SRX2014410 Unrestricted 0.0 Metatranscriptome 3300004580 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 49_LOW8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004580 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 33247590 77116 106 13 608 28 SRX2780058 Unrestricted 0.0 Metatranscriptome 3300041495 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaT AgResearch, New Zealand, Mosgeil 3300041495 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Unclassified Roots Unclassified White clover root -43.648506 172.343549 6104457 10977 193 254 782 508 0.0 Metatranscriptome 3300048666 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-70 (Metagenome Metatranscriptome) (Annotation) DOE Joint Genome Institute (JGI) 3300048666 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4205 -64.1498 16330262 37672 202 44 423 1105 Unrestricted 26.82 Metatranscriptome 3300004494 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 106_HOW12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004494 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 14429588 37287 135 19 407 54 SRX2780172 Unrestricted 0.0 Metatranscriptome 3300018712 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_068 - TARA_N000000711 (ERX1789456-ERR1719466) Canada's Michael Smith Genome Sciences Centre 3300018712 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -31.0292 4.6742 155506844 305814 0 12 1 67 0.0 Metatranscriptome 3300019136 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_004 - TARA_X000000325 (ERX1782382-ERR1712004) Canada's Michael Smith Genome Sciences Centre 3300019136 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 36.5533 -6.5669 280311790 599906 67 34 229 362 0.0 Metatranscriptome 3300022600 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL C3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022600 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes momedinamunoz@gmail.com Medina Medina No Host-associated Invertebrates Coral Cnidaria Unclassified coral 9.1956 -82.1254 189769713 250207 77 64 314 1364 SRX3998566 Unrestricted 0.0 Metatranscriptome 3300043789 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_266 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043789 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 31132515 73560 211 352 1090 1792 Unrestricted 62.72 Metatranscriptome 3300017241 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium, 13 C, 21 psu salinity and 250 ?mol photons light - Thalassiosira sp. NH16 (MMETSP1071) National Center for Genome Resources 3300017241 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 39110552 39830 34 6 46 10 0.0 Metatranscriptome 3300022501 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-O (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022501 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 55577222 123573 486 600 9296 4456 SRX4401048 Unrestricted 0.0 Metatranscriptome 3300010077 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_8_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010077 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 30589374 73218 165 482 23547 4855 Unrestricted 0.0 Metatranscriptome 3300016996 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in K medium, 20 C, 35 psu salinity and 94 ?mol photons light - Pelagomonas calceolata RCC 969 (MMETSP1328) National Center for Genome Resources 3300016996 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -29.23333333 -101.4833333 20967099 25698 18 1 26 1 0.0 Metatranscriptome 3300029685 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_6_6_40m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029685 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 79450227 168022 188 44 2969 286 SRX5338155 Unrestricted 28.5 Metatranscriptome 3300034481 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB21_Tmax_1102 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034481 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 74.0136 -139.5971 41722784 91051 46 22 692 523 SRX7542515 Unrestricted 0.0 Metatranscriptome 3300041519 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Bulk soil microbial community from Lincoln, Canterbury, New Zealand - BS17_6 MetaT AgResearch, New Zealand, Mosgeil 3300041519 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Environmental Terrestrial Unclassified Soil Agricultural land Dairy farm pasture soil -43.648506 172.343549 13852675 24674 172 78 860 240 0.0 Metatranscriptome 3300006370 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling - Hofmockel_1000124-3 ISU MetaT (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300006370 Metatranscriptome Analysis megahit v. 0.2.0 No Yes khof@iastate.edu, kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Agricultural land Soil Unclassified Enriched soil aggregate 42.0266187 -93.6486594 85235208 213130 530 206 1531 450 SRX3341158 Unrestricted 0.0 Metatranscriptome 3300041741 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_387 MetaT AgResearch, New Zealand, Mosgeil 3300041741 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 1412259 2898 63 49 354 62 0.0 Metatranscriptome 3300057137 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of lake water microbial communities from Sandhills, Nebraska, United States - NSL_Smith_2020 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300057137 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.78581 -102.52354 91702626 207076 51 35 299 156 Unrestricted 143.98 Metatranscriptome 3300032844 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_17JUL2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032844 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.3757 217920519 376592 100 51 102 297 SRX7519753 Unrestricted 72.24 Metatranscriptome 3300029272 *Microbiome Permanent Draft Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Sorghum rhizosphere microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B1.ctno.R1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300029272 Metatranscriptome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes colemanderr@gmail.com Devin Coleman-Derr No Host-associated Plants Rhizosphere Roots Unclassified sorghum rhizosphere 36.339058 -120.12031 18984266 37464 620 1572 3365 4396 0.0 Metatranscriptome 3300008881 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_4027 Massachusetts Institute of Technology 3300008881 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 5195276 17466 11 2 273 531 0.0 Metatranscriptome 3300011028 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 64 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011028 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 17793590 42668 63 359 3004 957 Unrestricted 0.0 Metatranscriptome 3300036580 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp02_R39 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036580 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 242982215 502837 402 52 830 967 SRX8837114 Unrestricted 45.37 Metatranscriptome 3300031056 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean transect - DeepDOM_S12_Trap_metaT (Eukaryote Community Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300031056 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -5.7 -26.0 519949257 979854 5 35 346 470 SRX2754464 Unrestricted 0.0 Metatranscriptome 3300030600 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Dnb12 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030600 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 377033448 866813 90 126 1703 785 SRX4547315 Unrestricted 0.0 Metatranscriptome 3300039301 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Metatranscriptome of coal bed microbial communities from the Powder River Basin, Montana, United States - T1YRFGPRNAC (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300039301 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Aquatic Groundwater Deep subsurface Coalbed methane well water coal bed water 45.435 -106.392 44647549 88350 20 14 361 39 Unrestricted 0.0 Metatranscriptome 3300010104 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_16_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010104 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 63304014 147675 115 667 13501 5088 Unrestricted 0.0 Metatranscriptome 3300016758 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071403BT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016758 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 316144001 696835 181 440 1878 4075 SRX3780777 Unrestricted 0.0 Metatranscriptome 3300030977 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLI2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030977 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 59.9982 10.7894 51668179 139834 80 142 386 822 SRX5351258 Unrestricted 0.0 Metatranscriptome 3300048533 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81959238-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048533 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 134932209 341239 201 188 1354 1116 Unrestricted 21.88 Metatranscriptome 3300012700 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES079 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012700 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.041 -89.686 114440545 218987 62 89 2515 3446 SRX3010941 Unrestricted 0.0 Metatranscriptome 3300049835 *Microbiome Permanent Draft Biofilm microbial communities of laboratory-scale, methanol-fed denitrifying cultures Lab-enriched, denitrifying biofilm microbial communities from a recirculating reactor in Laval, Quebec, Canada - Condition 1 Genome Quebec 3300049835 Metatranscriptome Analysis Trinity v. 2.9.1 No Yes richard.villemur@iaf.inrs.ca Richard Villemur No Engineered Bioreactor Unclassified Denitrification Unclassified Biofilm 45.54491579 -73.71990935 50852238 116321 83 12 310 25 0.0 Metatranscriptome 3300030755 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 11 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030755 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ake.olson@slu.se; francis.martin@inrae.fr Ake Olson; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 439516696 990715 379 200 374 232 SRX3345012 Unrestricted 0.0 Metatranscriptome 3300024552 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepA_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024552 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 182368835 377470 74 221 936 1503 SRX4547765 Unrestricted 21.27 Metatranscriptome 3300021891 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-20M (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021891 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 83652677 171836 56 68 170 298 SRX5203108 Unrestricted 0.0 Metatranscriptome 3300049128 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_B_0_drought (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049128 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 163332735 394053 219 155 1479 1010 Unrestricted 51.09 Metatranscriptome 3300017584 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 18 C, 32 psu salinity and 532 ?mol photons light - Chaetoceros affinis CCMP 159 (MMETSP0088) (SRX549062-SRR1294448) National Center for Genome Resources 3300017584 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 4084100 8306 2 1 7 1 0.0 Metatranscriptome 3300035571 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - 8F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035571 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4202 16.665 116301121 242171 358 306 5153 1238 SRX8209019 Unrestricted 43.01 Metatranscriptome 3300008372 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34693 J. Craig Venter Institute (JCVI) 3300008372 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 158153 761 0 0 4 0 0.0 Metatranscriptome 3300006694 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP1239 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006694 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -31.13 110.21 54615677 197744 3430 5144 8186 13367 SRX3299446 Unrestricted 0.0 Metatranscriptome 3300006229 *Microbiome Permanent Draft Marine sediment microbial communities from different distances from oil contamination, Gulf of Mexico Marine sediment microbial communities, 0.9 km from oil contamination, elevated hydrocarbon, Gulf of Mexico - BC143 Yale Center for Genome Analysis 3300006229 Metatranscriptome Analysis idba_tran released per JGI data release policy No Yes phu@lbl.gov Ping Hu No Environmental Aquatic Oceanic Marine Oil-contaminated sediment marine 28.3 -88.2 36826477 78071 1722 1595 9928 3091 0.0 Metatranscriptome 3300011365 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung A8 Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011365 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Fecal 38.04 -122.5 79054503 150821 68 107 1686 1419 SRX3007452, SRX3007451 Unrestricted 0.0 Metatranscriptome 3300041862 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_45 MetaT AgResearch, New Zealand, Mosgeil 3300041862 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 73843267 159490 242 112 2193 290 0.0 Metatranscriptome 3300037023 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Growout1_17 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037023 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 435666208 929024 793 49 1257 921 SRX8834031 Unrestricted 23.31 Metatranscriptome 3300032932 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_15MAY2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032932 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.372 52285050 90608 7 15 23 44 SRX7519505 Unrestricted 56.75 Metatranscriptome 3300024569 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepB_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024569 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 282463948 558540 75 152 618 1262 SRX4547619 Unrestricted 20.51 Metatranscriptome 3300012866 *Microbiome Permanent Draft Synthetic bacterial communities of pure cultures isolated from sediment of Lake Washington, USA Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under low oxygen conditions - MT methane_oxidizing 4strains_24hour-a (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012866 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes milachis@u.washington.edu Ludmila Chistoserdova No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 47.6553 -122.3035 14225184 28493 0 0 298 1 SRX3015537 Unrestricted 0.0 Metatranscriptome 3300013056 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Organic Plus compost microbial communities from Emeryville, California, USA - RNA 3rd pass 37_C BE-Lig OP (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013056 Metatranscriptome Analysis megahit v. 1.0.6 No Yes jmgladden@lbl.gov John Gladden No Environmental, Engineered Terrestrial, Solid waste Composting Soil, Mixed feedstock Commercial compost compost 37.83 -122.29 32781239 69639 11 526 261 1038 SRX4809034 Unrestricted 0.0 Metatranscriptome 3300056958 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Vasterbotten County, Sweden - Sphagnum balticum 11C_BA_DE (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056958 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.183 19.5578 223713229 469846 229 125 617 612 Unrestricted 60.49 Metatranscriptome 3300036435 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8NB15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036435 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 110214787 202587 396 1956 3465 6738 SRX8379640 Unrestricted 36.22 Metatranscriptome 3300017149 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater w/o silicate, 18 C, 20 psu salinity and 134 ?mol photons light - Emiliania huxleyi 379 (MMETSP0997) National Center for Genome Resources 3300017149 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 50.1669 -4.2504 25360030 33912 7 1 12 1 0.0 Metatranscriptome 3300004972 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 42 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004972 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 112493031 343577 5375 2428 20094 5658 Unrestricted 0.0 Metatranscriptome 3300016911 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Rush Creek, Arkansas in DY-V medium with rice grains, 18 C, 0 psu salinity and 198 ?mol photons light - Chromulina nebulosa UTEXLB2642 (MMETSP1095) National Center for Genome Resources 3300016911 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 36.135 -92.64 17345671 20871 2 1 3 0 0.0 Metatranscriptome 3300032403 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day5_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032403 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 42504252 72254 8 2 37 12 SRX6857165 Unrestricted 186.65 Metatranscriptome 3300031074 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T13 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031074 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 33289867 63308 55 26 74 128 SRX5794361 Unrestricted 20.99 Metatranscriptome 3300034307 *Microbiome Permanent Draft Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S58 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034307 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes colin.averill@usys.ethz.ch Colin Averill No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 36.0 -78.0 17946105 37843 5 77 365 405 SRX7613702 Unrestricted 543.39 Metatranscriptome 3300035607 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0606M20 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300035607 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8962 -97.0386 32556230 70735 261 576 4663 2014 SRX9140059, SRX9140060 Unrestricted 0.0 Metatranscriptome 3300012777 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Simoncouche, Canada - S_140709_E_mt (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012777 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.2311 -71.2508 229174754 479445 436 503 3838 6515 SRX3015313 Unrestricted 0.0 Metatranscriptome 3300052333 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_7B2_100318_0320 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052333 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@dbi.udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 107194824 264986 689 660 1840 2433 Unrestricted 168.87 Metatranscriptome 3300043797 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA53 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043797 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Unclassified Soil Unclassified soil 35.7877 -78.6442 33453056 75271 129 277 1997 1950 Unrestricted 47.4 Metatranscriptome 3300018852 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_100 - TARA_N000001606 (ERX1809471-ERR1739847) Canada's Michael Smith Genome Sciences Centre 3300018852 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -12.9723 -96.0122 205456269 519597 66 38 362 865 0.0 Metatranscriptome 3300030701 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 39_T1F_3236EL1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030701 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 63503478 87646 11 25 201 358 SRX4646568 Unrestricted 0.0 Metatranscriptome 3300031476 *Microbiome Permanent Draft Soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_R6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031476 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thb15@psu.edu Terrence Bell No Engineered Artificial ecosystem Surface biofilm Soil microcosm Unclassified soil 40.7997 -77.8629 37721669 78183 113 32 746 419 SRX5812519 Unrestricted 135.31 Metatranscriptome 3300026424 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0922-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026424 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 151638728 238453 12 3 5 50 SRX4796394 Unrestricted 83.67 Metatranscriptome 3300052755 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_49 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052755 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 78816054 207184 124 142 805 815 Unrestricted 88.36 Metatranscriptome 3300018869 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_025 - TARA_E500000200 (ERX1782317-ERR1712030) Canada's Michael Smith Genome Sciences Centre 3300018869 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.3833 19.4183 323552683 535117 6 23 16 198 0.0 Metatranscriptome 3300019066 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS670_0p1 J. Craig Venter Institute (JCVI) 3300019066 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 65.73045 22.445047 4568195 23337 4 10 125 168 0.0 Metatranscriptome 3300003709 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Yellowstone National Park, Wyoming, USA - Grendel (GRN_C) (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003709 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hypersaline mat 44.376 -110.69 3594481 6008 25 0 61 0 SRX2576722 Unrestricted 0.0 Metatranscriptome 3300006935 *Microbiome Permanent Draft Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, for analyzing deforestation at different spatial scales Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A10 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300006935 Metatranscriptome Analysis megahit v. 0.2.0 No Yes nusslein@microbio.umass.edu Nusslein, Klaus, Klaus Nusslein No Environmental Terrestrial Tropical forest Soil Unclassified Tropical rainforest soil -10.0 -62.0 114940345 421654 13414 4766 56347 13048 SRX5329108 Unrestricted 0.0 Metatranscriptome 3300030555 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Ab7 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030555 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 304374234 697579 103 111 365 436 SRX4796910 Unrestricted 0.0 Metatranscriptome 3300009195 *Microbiome Permanent Draft Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica - 4C J. Craig Venter Institute (JCVI) 3300009195 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ice edge, McMurdo Sound, Antarctica -77.36 164.28 165833721 464811 27 9 51 78 0.0 Metatranscriptome 3300018883 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_098 - TARA_N000001582 (ERX1789446-ERR1719492) Canada's Michael Smith Genome Sciences Centre 3300018883 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -25.8105 -111.7329 252431710 600984 1 15 21 160 0.0 Metatranscriptome 3300007225 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_B4L_H (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007225 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 114086174 343755 25636 10677 70292 25658 SRX5781202, SRX5781201 Unrestricted 0.0 Metatranscriptome 3300003692 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA Grassland soil microbial communities from Hopland, California, USA - Sample H3_Bulk_42 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003692 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes pettridge2@llnl.gov, nuccio1@llnl.gov; pettridge2@llnl.gov Jennifer Pett-Ridge, Erin Nuccio; Jennifer Pett-Ridge No Environmental Terrestrial Grasslands Soil Bulk soil Avena fatua rhizosphere 38.972988 -123.116539 83847371 253834 247 443 2013 2587 SRX2563669 Unrestricted 0.0 Metatranscriptome 3300037593 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metataranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0817S20re (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037593 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0388 45079544 93140 199 228 5612 825 SRX9149522 Unrestricted 60.22 Metatranscriptome 3300046212 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_2_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046212 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 41369464 69471 1 0 25 0 Restricted 183.44 Metatranscriptome 3300030900 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T21 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030900 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 25275012 46625 42 12 80 158 SRX5352259 Unrestricted 14.79 Metatranscriptome 3300029281 *Microbiome Permanent Draft Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Soil microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B3.ctno.R1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300029281 Metatranscriptome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes colemanderr@gmail.com Devin Coleman-Derr No Environmental Terrestrial Unclassified Soil Agricultural land Field Soil 36.339058 -120.12031 33823734 70700 244 804 1978 2913 0.0 Metatranscriptome 3300016949 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, no silica, at 16 C, 34 psu salinity and 245 ?mol photons light - Isochrysis sp. CCMP 1324 (MMETSP1132) National Center for Genome Resources 3300016949 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 27953720 32087 7 4 13 5 0.0 Metatranscriptome 3300017111 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in Aquil nutrients amended seawater with alpha-glycerophosphate, at 20 C, 35 psu salinity and 554 ?mol photons light - Emiliania huxleyi PLY M219 (MMETSP1153) National Center for Genome Resources 3300017111 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 35202652 43857 9 5 10 9 0.0 Metatranscriptome 3300021316 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.485 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021316 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.286 -124.052 178975793 424395 253 1660 3675 6989 SRX4017447 Unrestricted 0.0 Metatranscriptome 3300022815 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from Microcerotermes sp. nest - French Guiana - 27-16 mRNA University of Luxembourg 3300022815 Metatranscriptome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 5.06224 -53.047407 73323003 247297 0 1 0 3 0.0 Metatranscriptome 3300013074 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES147 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013074 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 68579316 148787 65 113 1398 2699 SRX3011206 Unrestricted 0.0 Metatranscriptome 3300016818 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of freshwater eukaryotic communities from unknown location in Standard Volvox Media, at 18 C and 228 ?mol photons light - Cyanoptyche gloeocystis SAG4.97 (MMETSP1086) National Center for Genome Resources 3300016818 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 14707640 23058 12 1 7 1 0.0 Metatranscriptome 3300004526 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 116_HOW13 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004526 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 21297317 50286 262 65 639 201 SRX2780194 Unrestricted 0.0 Metatranscriptome 3300031107 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031107 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 67500116 132469 64 43 83 200 SRX5794199 Unrestricted 22.2 Metatranscriptome 3300042411 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_176 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042411 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 139756399 323695 309 557 2510 2745 Unrestricted 46.27 Metatranscriptome 3300008872 *Microbiome Permanent Draft Microbial communities of Wadden Sea tidal flat in Germany Microbial communities of Wadden Sea tidal flat in Germany - 0850 lateLowTide Bielefeld University 3300008872 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Tidal flat 53.73 7.67 5886012 19713 49 24 686 279 0.0 Metatranscriptome 3300016850 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in ASW medium w/o silicate, at 20 C, 30 psu salinity and 743 ?mol photons light - Tryblionella compressa CCMP 561 (MMETSP0745) National Center for Genome Resources 3300016850 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 21090087 25665 3 1 1 1 0.0 Metatranscriptome 3300030833 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030833 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 59.9982 10.7894 11734111 22682 203 345 800 1933 SRX5351365 Unrestricted 0.0 Metatranscriptome 3300007328 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S5 c16 Surf_A metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007328 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 138968278 446857 2399 2224 6284 7888 SRX3196603 Unrestricted 0.0 Metatranscriptome 3300006578 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006578 Metatranscriptome Analysis megahit v. 0.2.0 No Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil 45.54 -73.72 694102040 2422592 88 43 186 115 SRX2522017 Unrestricted 0.0 Metatranscriptome 3300006231 *Microbiome Permanent Draft Marine sediment microbial communities from different distances from oil contamination, Gulf of Mexico Marine sediment microbial communities, 2.7 km from oil contamination, elevated hydrocarbon, Gulf of Mexico - BC278 Yale Center for Genome Analysis 3300006231 Metatranscriptome Analysis idba_tran released per JGI data release policy No Yes phu@lbl.gov Ping Hu No Environmental Aquatic Oceanic Marine Oil-contaminated sediment marine 28.3 -88.2 25472622 55479 2010 1671 13211 3279 0.0 Metatranscriptome 3300036285 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0817M02 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300036285 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0387 55785708 121923 258 641 3518 2137 SRX9140128, SRX9140127 Unrestricted 0.0 Metatranscriptome 3300018512 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_137 - TARA_N000002931 (ERX1782344-ERR1712163) Canada's Michael Smith Genome Sciences Centre 3300018512 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 14.2004 -116.6398 10464687 22106 1 0 1 18 0.0 Metatranscriptome 3300017196 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, at 22 C, 21 psu salinity and 412 ?mol photons light - Chromera velia CCMP 2878 (MMETSP0290) National Center for Genome Resources 3300017196 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 35561917 53188 9 1 13 1 0.0 Metatranscriptome 3300019226 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA - AD_UKC055_MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019226 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 41.53 -90.43 192719554 387992 77 233 14170 791 SRX4809088 Unrestricted 0.0 Metatranscriptome 3300017219 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium (10X Nitrate, 7X phosphorous), at 30 C, 38 psu salinity and 722 ?mol photons light - Tetraselmis striata LANL1001 (MMETSP0817) National Center for Genome Resources 3300017219 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 32748461 37314 2 2 1 1 0.0 Metatranscriptome 3300037767 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - F18NovL (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037767 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4327 16.6819 135717768 285482 128 648 701 2207 SRX9165162 Unrestricted 36.26 Metatranscriptome 3300046075 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-212 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046075 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4604 -64.2162 155757544 361787 585 30 1051 597 Unrestricted 17.35 Metatranscriptome 3300016737 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011506CT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016737 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 348558028 751441 147 482 2696 6088 SRX3780724 Unrestricted 0.0 Metatranscriptome 3300047568 *Microbiome Permanent Draft Soil microbial and eukaryotic communities from grasslands in the Rocky Mountains, Colorado, United States Metatranscriptome of soil eukaryotic communities from grasslands in the Rocky Mountains, Colorado, United States - ER-Low-None-9-5 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047568 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mimann@unm.edu Michael Mann No Environmental Terrestrial Unclassified Soil Grasslands Soil 38.9664 -106.9904 317332054 610058 9 39 540 211 Unrestricted 57.65 Metatranscriptome 3300048966 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 53 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048966 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.7385 -82.2743 37535144 82820 112 25 301 188 Restricted 25.88 Metatranscriptome 3300007720 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS914_Anemone_RNA CLC_assembly Marine Biological Laboratory 3300007720 Metatranscriptome Analysis CLC genomics workbench, v. 7.0 released per JGI data release policy No Yes jhuber@mbl.edu, jhuber@whoi.edu Huber, Julie Huber No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse vent fluid, hydrothermal vents 45.933177 -130.013868 344530 669 22 10 305 14 0.0 Metatranscriptome 3300013107 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial functions of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate a Georgia Genomics Facility 3300013107 Metatranscriptome Analysis Trinity 2.03 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 38166613 123347 7240 1686 15509 4401 0.0 Metatranscriptome 3300030815 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030815 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 59.9982 10.7894 120950187 285270 44 130 295 704 SRX5351396 Unrestricted 0.0 Metatranscriptome 3300016696 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES024 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016696 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 46.008 -89.701 137256614 281051 131 107 808 3482 SRX3780235 Unrestricted 0.0 Metatranscriptome 3300007243 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_A6L_L (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007243 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 37266090 131071 8598 4804 20488 11641 SRX7191096 Unrestricted 0.0 Metatranscriptome 3300002864 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Avena fatua rhizosphere microbial communities - H2_Rhizo_Litter_7 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002864 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes mkfstone@berkeley.edu, nuccio1@llnl.gov; mkfstone@berkeley.edu Mary Firestone, Erin Nuccio; Mary Firestone No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.97364 -123.117453 7047355 20414 79 138 732 1109 SRX2558068 Unrestricted 0.0 Metatranscriptome 3300030760 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030760 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 59.9992 10.7901 346169322 824831 99 164 518 747 SRX5351813 Unrestricted 0.0 Metatranscriptome 3300037753 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - F19MarK (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037753 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4336 16.6836 84026365 177405 102 685 826 2359 SRX9165639 Unrestricted 45.35 Metatranscriptome 3300035289 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Antarctic Ocean - DFB2_05 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035289 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified Seawater -46.5954 142.0314 312297496 633741 1079 73 2089 1798 SRX8226638 Unrestricted 17.26 Metatranscriptome 3300011072 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 48 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011072 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 75746642 176332 239 1320 15157 3997 Unrestricted 0.0 Metatranscriptome 3300008586 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-17 University of Hawaii 3300008586 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 6820322 11132 7 1 521 59 0.0 Metatranscriptome 3300038172 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_M1_C1_D6_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038172 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 37965289 81200 255 148 4639 486 SRX9390861 Unrestricted 255.0 Metatranscriptome 3300056998 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Frasne, France - Sphagnum fallax 11C_SF_FR (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056998 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 250328803 548161 214 89 437 480 Unrestricted 57.39 Metatranscriptome 3300009340 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from the North Atlantic ocean - ACM60 University of Georgia 3300009340 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 38393926 114004 79 74 136 232 0.0 Metatranscriptome 3300001229 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring microbial communities from Elkhorn Slough, Monterey Bay, USA - CR6B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300001229 Metatranscriptome Analysis No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Intertidal zone Marine Estuary: Microbial mat Hypersaline mat 36.83 -121.785 83534545 233277 14 6 43 49 SRX3311476 Unrestricted 0.0 Metatranscriptome 3300030795 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030795 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7043 45831902 94525 88 51 159 276 SRX5794195 Unrestricted 19.15 Metatranscriptome 3300035567 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Metatranscriptome of soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_Dec_plot3_rep1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035567 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6591 -80.6279 572516285 1306035 512 382 5481 2358 SRX8186825 Unrestricted 37.84 Metatranscriptome 3300041899 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F18_387 MetaT_extra_run AgResearch, New Zealand, Mosgeil 3300041899 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 2524546 5591 333 106 1677 145 0.0 Metatranscriptome 3300002763 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS1_TP1_13H 3300002763 Metatranscriptome Analysis released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 511605 1273 212 1 287 0 0.0 Metatranscriptome 3300021851 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Metatranscriptome of extremophilic microbial mat communities from Yellowstone National Park, Wyoming, USA - CONBC_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021851 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jim.fredrickson@pnnl.gov; binskeep@montana.edu Jim Fredrickson; William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 44.5564 -110.8321 62414154 200658 14 4 28058 275 SRX3940510 Unrestricted 0.0 Metatranscriptome 3300030025 *Microbiome Permanent Draft North Pond metatranscriptomes Metatranscriptome of crustal fluid microbial communities from North Pond, Mid-Atlantic Ridge, Atlantic Ocean - 1383CD 2012 Marine Biological Laboratory 3300030025 Metatranscriptome Analysis IDBA-UD v. 1.1.2 released by JGI data releasing policy No Yes lmseyler@gmail.com Lauren Seyler No Environmental Aquatic Oceanic Marine Crustal Fluids Oceanic crustal fluids 22.75 -46.083 2262787 3895 974 169 2009 320 0.0 Metatranscriptome 3300030806 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030806 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 59.9982 10.7894 9687469 18036 129 334 583 1719 SRX5351385 Unrestricted 0.0 Metatranscriptome 3300011318 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S19 AAIW_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011318 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 100572331 226061 41 51 3423 1879 SRX3787349 Unrestricted 0.0 Metatranscriptome 3300012695 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES081 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012695 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.041 -89.686 94245506 185447 86 111 5107 3557 SRX3010942 Unrestricted 0.0 Metatranscriptome 3300021937 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Marine eukaryotic phytoplankton communities from the South Atlantic Ocean - 30m ANT-15 Euk ARK-20-2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021937 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 78.8697 8.1122 121712981 254290 66 49 123 170 SRX2554363 Unrestricted 0.0 Metatranscriptome 3300030961 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E7_Q_0.2 metaT (Eukaryote Community Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300030961 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 186737603 424279 30 7 395 321 SRX3195627, SRX3341707 Unrestricted 0.0 Metatranscriptome 3300016798 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in K medium, 20 C, 35 psu salinity and 168 ?mol photons light - Prasinoderma singularis RCC 927 (MMETSP1315) National Center for Genome Resources 3300016798 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -34.53333333 -72.41666667 16697115 20227 30 5 52 2 0.0 Metatranscriptome 3300017007 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in blue star agar w/o silica, at 20 C, 35 psu salinity and 545 ?mol photons light - Bigelowiella longifila CCMP 242 (MMETSP1359) National Center for Genome Resources 3300017007 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 23775589 34816 16 14 15 13 0.0 Metatranscriptome 3300031580 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB21_1111_SCM (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031580 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 74.0136 -139.5971 209016429 412794 216 34 397 1090 SRX5651260 Unrestricted 25.44 Metatranscriptome 3300009748 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from Louisiana Shelf, Gulf of Mexico - GoM_2015_C6C_210_18m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009748 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 28.8679 -90.4764 74908265 149111 132 165 3795 4577 Unrestricted 0.0 Metatranscriptome 3300031494 *Microbiome Permanent Draft Soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - STER_N_R4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031494 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thb15@psu.edu Terrence Bell No Engineered Artificial ecosystem Surface biofilm Soil microcosm Unclassified soil 40.7997 -77.8629 10910031 17267 15 0 57 20 SRX5810836 Unrestricted 115.91 Metatranscriptome 3300008921 *Microbiome Permanent Draft Microbial communities of nutrient treated water from Blanes Bay, Barcelona, Spain Microbial communities of nutrient treated water from Blanes Bay, Barcelona, Spain - NB1 Sodertorn University 3300008921 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Bay water 41.666 2.8 48300647 162545 444 230 2548 2020 ERX1055477 0.0 Metatranscriptome 3300048942 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 18 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048942 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 42.2817 -81.6717 27116587 53199 10 4 36 29 Restricted 48.72 Metatranscriptome 3300003952 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS907_80_12INC Marine Biological Laboratory 3300003952 Metatranscriptome Analysis CLC Genomics WB7 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933 -130.014 1748651 6112 37 1 44 3 0.0 Metatranscriptome 3300031096 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_194 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031096 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040592 -106.9484972 165285675 381808 588 547 3004 2474 SRX8134329 Unrestricted 20.52 Metatranscriptome 3300036454 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp03_R73 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036454 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 169606987 353699 245 97 537 1186 SRX8840919 Unrestricted 24.7 Metatranscriptome 3300004321 *Microbiome Permanent Draft Metatranscriptomics studies in sediment microbial communities from the mangroves in Sao Paulo, Brazil Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC3B 3300004321 Metatranscriptome Analysis IDBA released by JGI data releasing policy No Yes luc.g.cabral@gmail.com Luc?lia Cabral, Lucelia Cabral No Environmental Aquatic Intertidal zone Marine Mangrove sediment Mangrove sediment -23.8553 -46.1394 18762773 64372 2470 856 8023 2682 0.0 Metatranscriptome 3300043282 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - PeachFuzz.Jun19.R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043282 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.5322 -110.7975 8-9 9713408 15624 4 0 57 3 SRX10107877 Unrestricted 290.77 Metatranscriptome 3300010129 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from Louisiana Shelf, Gulf of Mexico - GoM_2015_C6C_237_18m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010129 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 28.8679 -90.4764 86382663 194212 261 445 4129 4600 Unrestricted 0.0 Metatranscriptome 3300036170 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of phycosphere-associated microbial communities from LLNL, Livermore, CA, United States - Pt_3-2_filter_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036170 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Phycosphere Diatoms Unclassified defined media 37.6818 -121.768 26670517 34882 10 1 9 80 SRX8240366 Unrestricted 181.62 Metatranscriptome 3300033537 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_18SEP2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300033537 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3941 -85.3741 541927652 973322 128 104 241 673 SRX7706898 Unrestricted 29.16 Metatranscriptome 3300046434 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_35N_Control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046434 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.157 -81.3611 17761276 41584 113 146 877 714 Unrestricted 65.31 Metatranscriptome 3300048706 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Metatranscriptome of beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - B2_RE2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048706 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Rectum rectum 49.2552 -122.5085 99412281 197068 1 0 65 5 Restricted 22.02 Metatranscriptome 3300028093 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Yuk_RepC_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028093 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 93401143 179974 50 85 220 543 SRX5245751 Unrestricted 25.39 Metatranscriptome 3300003524 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS2_TP1_12H 3300003524 Metatranscriptome Analysis released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933251 -130.01379 525459 1888 86 1 57 4 0.0 Metatranscriptome 3300018784 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_100 - TARA_N000001620 (ERX1789528-ERR1719403) Canada's Michael Smith Genome Sciences Centre 3300018784 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -12.9359 -96.0413 194357267 424559 0 19 5 130 0.0 Metatranscriptome 3300028723 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Val1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028723 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 33507177 62320 8 6 241 42 SRX5356202 Unrestricted 96.02 Metatranscriptome 3300055309 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP8.1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055309 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 254230387 517244 26 24 113 148 Unrestricted 73.39 Metatranscriptome 3300046036 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-65 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046036 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4205 -64.1498 37716745 91698 428 25 744 242 Unrestricted 23.09 Metatranscriptome 3300002293 *Microbiome Permanent Draft Biogas fermentation microbial communities from biogas plants in Germany Biogas fermentation microbial communities from Germany - Plant 4 RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002293 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes asczyrba@techfak.uni-bielefeld.de Alexander Sczyrba No Engineered Bioreactor Digestate Anaerobic Unclassified Biogas fermentantion 52.0385 8.4956 47871355 109091 6 3 111 5 SRX2501907 Unrestricted 0.0 Metatranscriptome 3300010925 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS917_55_13C_TP1_INC4_6 Marine Biological Laboratory 3300010925 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 4702953 9410 601 10 1453 15 0.0 Metatranscriptome 3300021305 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States - R868 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021305 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 46.099 -124.365 72333435 156840 364 175 1362 6143 SRX4015013 Unrestricted 0.0 Metatranscriptome 3300046108 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-206 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046108 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4604 -64.2162 12011129 27531 143 13 229 198 Unrestricted 13.7 Metatranscriptome 3300040754 *Microbiome Finished Lab enriched marine microbial communities from the Bohai Gulf, China Lab enriched marine microbial communities from the Bohai Gulf, China - CNL Hebei Normal University of Science &Technology 3300040754 Metatranscriptome Analysis Trinity v. 2.4.0 released by Si Li No Yes jackeikee@aliyun.com Si Li No Environmental Aquatic Gulf Marine Unclassified Marine 38.26 118.24 60652526 123540 49 32 93 140 0.0 Metatranscriptome 3300031011 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031011 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 59.997 10.7902 14430746 29748 152 273 839 1344 SRX5351829 Unrestricted 0.0 Metatranscriptome 3300035354 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0819M56 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035354 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0387 19135354 36840 292 559 5641 2505 SRX8237524 Unrestricted 73.17 Metatranscriptome 3300028137 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - WCR_74 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028137 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 581152850 1185380 366 66 685 976 SRX5172116 Unrestricted 29.13 Metatranscriptome 3300017174 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, at 5 C, 35 psu salinity and 539 ?mol photons light - Proboscia inermis CCAP 1064/1 (MMETSP0816) National Center for Genome Resources 3300017174 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 32896308 49233 12 10 14 15 0.0 Metatranscriptome 3300010061 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_0_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010061 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 42385998 92880 176 770 15492 6320 Unrestricted 0.0 Metatranscriptome 3300041455 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaT AgResearch, New Zealand, Mosgeil 3300041455 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Rhizoplane Roots Dairy farm pasture -43.648506 172.343549 25938330 48880 319 327 1273 781 0.0 Metatranscriptome 3300022368 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States - S.454 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022368 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.178 -123.853 36488240 72151 84 331 991 1635 SRX4016691 Unrestricted 0.0 Metatranscriptome 3300050379 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T3_4 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050379 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 54883474 83855 14 1 97 13 Unrestricted 395.91 Metatranscriptome 3300018645 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_151 - TARA_N000002739 (ERX1789677-ERR1719371) Canada's Michael Smith Genome Sciences Centre 3300018645 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 36.1811 -28.9373 65057314 213164 2 8 8 108 0.0 Metatranscriptome 3300043817 *Microbiome Permanent Draft Green algae associated microbial communities from Chlorella culture in University of Arizona, United States Metatranscriptome of green algae associated microbial communities from Chlorella culture in University of Arizona, USA - V. chlorellavorus infection vv_d4_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043817 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jbrown@ag.arizona.edu Judith Brown No Host-associated Algae Unclassified Green algae Unclassified green algae 32.2308 -110.9534 64901994 114024 3 12 43 11 Unrestricted 141.95 Metatranscriptome 3300016956 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of freshwater eukaryotic communities from California, USA in COMBO medium, 20 C, 21 psu salinity and 655 ?mol photons light - Thalassiosira sp. FW (MMETSP1059) National Center for Genome Resources 3300016956 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 34.27944 -114.22222 25812950 23597 6 5 8 12 0.0 Metatranscriptome 3300046627 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-159 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046627 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4757 -64.2279 125658024 296975 939 36 1679 552 Unrestricted 17.48 Metatranscriptome 3300047608 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_7_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047608 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 34649508 62826 4 0 14 0 Restricted 213.58 Metatranscriptome 3300038297 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_N3_C1_D6_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038297 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 50814174 112386 194 257 3233 757 SRX9391567 Unrestricted 255.19 Metatranscriptome 3300017031 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of freshwater eukaryotic communities from unknown location in MiEB1B12 medium, at 18 C and 363 ?mol photons light - Chlamydomonas chlamydogama SAG 11-48b (MMETSP1392) National Center for Genome Resources 3300017031 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 32185225 37449 3 2 1 2 0.0 Metatranscriptome 3300010928 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS917_55_12C_TP1_8 Marine Biological Laboratory 3300010928 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 8250382 17420 413 4 1519 13 0.0 Metatranscriptome 3300046105 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-114 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046105 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4604 -64.2162 142078792 331619 1014 49 1728 643 Unrestricted 20.12 Metatranscriptome 3300021308 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.462 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021308 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.27 -123.946 100794428 163009 115 509 861 3485 SRX4016682 Unrestricted 0.0 Metatranscriptome 3300026427 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 1R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026427 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 159170227 253836 89 15 125 302 SRX4474417 Unrestricted 34.59 Metatranscriptome 3300046592 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - G1-R2-B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046592 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.048 122095153 278284 108 93 518 308 Unrestricted 53.86 Metatranscriptome 3300030956 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E4_T_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030956 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 467174311 1434182 418 601 824 1609 SRX3341226 Unrestricted 0.0 Metatranscriptome 3300021901 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-12 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021901 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine -4.668 -7.06118 94236492 204157 69 111 177 335 SRX6381272 Unrestricted 0.0 Metatranscriptome 3300024862 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepB_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024862 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 223601009 470371 54 94 416 766 SRX4547634 Unrestricted 20.62 Metatranscriptome 3300043794 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_124 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043794 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 80859630 189652 95 346 2854 1871 Unrestricted 48.39 Metatranscriptome 3300012774 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Simoncouche, Canada - S_130109_E_mt (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012774 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.2311 -71.2508 178057977 392246 604 303 15108 8829 SRX3015289 Unrestricted 0.0 Metatranscriptome 3300035604 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R1105S12 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300035604 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0387 28856668 53608 270 469 6002 1469 SRX9140010, SRX9140011 Unrestricted 0.0 Metatranscriptome 3300040763 *Microbiome Finished Lab enriched marine microbial communities from the Bohai Gulf, China Lab enriched marine microbial communities from the Bohai Gulf, China - COL Hebei Normal University of Science &Technology 3300040763 Metatranscriptome Analysis Trinity v. 2.4.0 released by Si Li No Yes jackeikee@aliyun.com Si Li No Environmental Aquatic Gulf Marine Unclassified Marine 38.26 118.24 144048724 318972 97 165 363 632 0.0 Metatranscriptome 3300029639 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_36m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029639 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 7551858 16699 20 6 545 64 SRX5337976 Unrestricted 24.92 Metatranscriptome 3300034304 *Microbiome Permanent Draft Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S98 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034304 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes colin.averill@usys.ethz.ch Colin Averill No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 36.0 -78.0 15888042 34703 7 37 244 166 SRX7586683 Unrestricted 504.22 Metatranscriptome 3300004489 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 14 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004489 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 36155516 123862 3007 1426 9975 2617 Unrestricted 0.0 Metatranscriptome 3300034663 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034663 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 317240894 747033 382 1456 3970 6529 SRX7572527 Unrestricted 37.39 Metatranscriptome 3300024859 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024859 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 185337448 380191 95 240 1408 1840 SRX4547763 Unrestricted 23.22 Metatranscriptome 3300031077 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031077 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 36685590 70362 52 28 160 170 SRX5794198 Unrestricted 19.07 Metatranscriptome 3300010170 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_2300 MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010170 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 25585735 57546 1092 40 11173 143 SRX2740064, SRX2740065 Unrestricted 0.0 Metatranscriptome 3300052890 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 117-S78Day63 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052890 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 178908869 374303 23 7 93 36 Unrestricted 40.18 Metatranscriptome 3300009723 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from Louisiana Shelf, Gulf of Mexico - GoM_2015_C6C_233_18m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009723 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 28.8679 -90.4764 13046177 25803 138 88 4021 1872 Unrestricted 0.0 Metatranscriptome 3300013077 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES009 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013077 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 108170207 228808 397 225 12959 11571 SRX3379880 Unrestricted 0.0 Metatranscriptome 3300018762 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_084 - TARA_N000001006 (ERX1789586-ERR1719157) Canada's Michael Smith Genome Sciences Centre 3300018762 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -60.2287 -60.6476 156330307 368982 18 10 49 244 0.0 Metatranscriptome 3300021273 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States - S.386 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021273 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.187 -123.589 55685723 125158 715 3420 8451 20028 SRX4016318 Unrestricted 0.0 Metatranscriptome 3300047605 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_7_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047605 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 24723221 45489 1 0 23 1 Restricted 415.66 Metatranscriptome 3300018759 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_067 - TARA_N000000759 (ERX1789554-ERR1719287) Canada's Michael Smith Genome Sciences Centre 3300018759 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -32.2401 17.7103 150622309 368424 4 2 14 53 0.0 Metatranscriptome 3300021866 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021866 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 37.8328667 -12.087 17938957 43462 89 55 189 211 SRX5203739 Unrestricted 0.0 Metatranscriptome 3300054640 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_CL_041R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300054640 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0704 10.43436 127822285 327672 379 408 1262 1606 Unrestricted 42.15 Metatranscriptome 3300032422 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day12_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032422 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 31799281 53216 14 0 61 8 SRX9097238 Unrestricted 162.04 Metatranscriptome 3300022365 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.186 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022365 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.313 -123.997 22451694 42524 228 918 4439 3058 SRX4015909 Unrestricted 0.0 Metatranscriptome 3300051251 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Frauenau, Bavaria, Germany - BW_CO_027R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051251 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.997182 13.361302 58534359 154008 197 192 1077 704 Unrestricted 99.82 Metatranscriptome 3300027017 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0440-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300027017 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 142620989 236947 9 101 13 83 SRX5251578 Unrestricted 105.96 Metatranscriptome 3300008343 *Microbiome Permanent Draft Microbial communities of ileostoma effluent collected from a human female subject in Netherlands Microbial communities of ileostoma effluent collected from a human female subject in Netherlands - A-rep Wageningen University 3300008343 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes supratimmukherjee@lbl.gov Supratim Mukherjee No Host-associated Mammals: Human Small intestine Digestive system Ileostomy effluent Human small intestine 4994875 12613 26 2 419 19 SRX258973 0.0 Metatranscriptome 3300018648 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_131 - TARA_N000002360 (ERX1782304-ERR1712027) Canada's Michael Smith Genome Sciences Centre 3300018648 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 22.7267 -157.9955 96608427 213567 16 23 47 386 0.0 Metatranscriptome 3300016734 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041410CS metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016734 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 333311685 716863 43 209 906 2094 SRX4666070, SRX3781477 Unrestricted 0.0 Metatranscriptome 3300016961 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in K medium w/o silicate, at 23 C, 35 psu salinity and 721 ?mol photons light - Hemiselmis tepida CCMP 443 (MMETSP1355) National Center for Genome Resources 3300016961 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 21269891 32640 19 8 26 20 0.0 Metatranscriptome 3300036489 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of sediment microbial communities from Prado wetlands, California, USA - CSM_Prado_Oct18_AM2_0.5z2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036489 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 176626035 350581 81 258 597 1059 SRX8771084 Unrestricted 25.07 Metatranscriptome 3300030798 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T0 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030798 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7416 -117.7042 21788970 42223 45 22 92 137 SRX5793956 Unrestricted 28.21 Metatranscriptome 3300037764 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - F18JunB (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037764 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4211 16.6688 112529044 229420 104 825 1129 2684 SRX9164991 Unrestricted 34.19 Metatranscriptome 3300028101 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepB_0h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028101 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 154867948 328819 79 282 2028 1798 SRX5245742 Unrestricted 29.38 Metatranscriptome 3300011315 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S21 Surf_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011315 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 90374813 214514 100 53 1552 1314 SRX5632408 Unrestricted 0.0 Metatranscriptome 3300010056 *Microbiome Permanent Draft Continental margin sediment microbial communities from various locations Metatranascriptome of continental margin sediment microbial communities from Atlantic Ocean - ATL_M5_12_14 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010056 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michaelgraw@gmail.com; rcolwell@coas.oregonstate.edu Michael Graw; Frederick Colwell No Environmental Aquatic Continental margin Marine Sediment Continental margin sediment 37.5409 -74.1021 415933 1159 0 0 683 24 SRX2525671 Unrestricted 0.0 Metatranscriptome 3300056960 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Southern Region, Iceland - Sphagnum auriculatum 6_AUR_ICE (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056960 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified Peat moss 64.11382 -20.49606 177999220 361865 92 56 294 334 Unrestricted 60.17 Metatranscriptome 3300052492 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 111-S77Day63 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052492 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 123099727 257698 26 5 97 47 Unrestricted 48.11 Metatranscriptome 3300031104 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T13 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031104 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 38755174 79155 121 86 177 440 SRX5352037 Unrestricted 27.49 Metatranscriptome 3300038276 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_M1_C1_D1_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038276 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 14123502 26888 415 1011 7548 3315 SRX9386093 Unrestricted 89.91 Metatranscriptome 3300056995 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Frasne, France - Sphagnum fallax 10OTC_SF_FR (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056995 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 170102393 365677 174 87 395 476 Unrestricted 62.52 Metatranscriptome 3300007189 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_A1_L (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007189 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 61090776 213511 5885 10273 17350 27498 SRX2752503 Unrestricted 0.0 Metatranscriptome 3300051601 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 48_100_16 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051601 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 67130837 180611 177 220 1358 1285 Unrestricted 107.57 Metatranscriptome 3300046173 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_6_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046173 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 57695156 101529 1 0 27 1 Restricted 135.68 Metatranscriptome 3300005579 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Indian Ocean - MP1372 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005579 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -39.148 135.0813 67075918 208679 1791 1636 4173 3769 SRX3325632 Unrestricted 0.0 Metatranscriptome 3300002867 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 17 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002867 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 7349957 21406 32 69 813 446 Unrestricted 0.0 Metatranscriptome 3300009309 *Microbiome Permanent Draft Microbial communities of freshwater from Kranji Reservoir, Singapore Microbial communities of freshwater from Kranji Reservoir, Singapore - Krb2-8pm Massachusetts Institute of Technology 3300009309 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater reservoir 1.4371666 103.7186571 5445961 20093 22 5 900 183 SRX472178 0.0 Metatranscriptome 3300017599 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in ESM medium with SW802, 23 C, 35 psu salinity and 437 ?mol photons light - Bicosoecida sp. CB-2014 ms1 (MMETSP0115) (SRX548994-SRR1294380) National Center for Genome Resources 3300017599 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Beach/Shore marine 46.5105 -63.4856 8111293 11767 17 1 21 1 0.0 Metatranscriptome 3300016760 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in ASW medium, resuspended in ASW with 2.5 mg/L nocodazole, 20 C, 29 psu salinity and 218 ?mol photons light - Chaetoceros curvisetus (MMETSP0719) National Center for Genome Resources 3300016760 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 32.9 -117.25 3420605 8879 67 27 155 59 0.0 Metatranscriptome 3300037730 *Microbiome Permanent Draft Soil fungal communities from Pine and Eucalyptus forests in California, United States and New South Wales, Australia Metatranscriptome of soil fungal communities from native Eucalyptus forests in New South Wales, Australia - Eu_6 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037730 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes sunny.liao@ufl.edu Hui-Ling Liao No Environmental Terrestrial Tropical forest Soil Bulk soil soil -34.5 150.0 7112670 11617 1 0 5 2 SRX9140122 Unrestricted 22.89 Metatranscriptome 3300018841 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_076 - TARA_N000000884 (ERX1789477-ERR1719315) Canada's Michael Smith Genome Sciences Centre 3300018841 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -21.004 -35.3168 229947211 476296 0 38 6 146 0.0 Metatranscriptome 3300041924 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_50 MetaT AgResearch, New Zealand, Mosgeil 3300041924 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 11228614 23071 100 48 871 147 0.0 Metatranscriptome 3300033600 *Microbiome Permanent Draft Characterization of microbial community from North Pond CORK fluids Aquifer fluid microbial communities from North Pond CORKs, Mid-Atlantic Ridge, Atlantic Ocean - Hole 1383C Shallow RNA SIP 12C Marine Biological Laboratory 3300033600 Metatranscriptome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Aquatic Oceanic Marine Oceanic crust Aquifer fluid 22.8 -46.05 446243 825 17 0 24 0 0.0 Metatranscriptome 3300012698 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES071 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012698 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.041 -89.686 107792650 207373 47 76 1558 2865 SRX3010894 Unrestricted 0.0 Metatranscriptome 3300011333 *Microbiome Permanent Draft Soil microbial communities from various locations in USA and Cambodia to study soil gas exchange rates Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300011333 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Agricultural land Soil Unclassified Soil 37.4289 -122.18 681529179 1585529 151 1822 2058 15250 SRX2525518 Unrestricted 0.0 Metatranscriptome 3300016806 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Kattegat in HESNW medium w/o silica, 22 C, 30 psu salinity and 526 ?mol photons light - Lessardia elongata SPMC 104 (MMETSP1147) National Center for Genome Resources 3300016806 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 785286 2460 1 0 0 0 0.0 Metatranscriptome 3300008779 *Microbiome Permanent Draft Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico - 30m_>1.6micron Georgia Institute of Technology 3300008779 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hypoxic zone Marine Unclassified Ocean water 18.9 -104.5 704556 1381 19 21 287 412 SRX895490 0.0 Metatranscriptome 3300032153 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E4_V_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032153 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 130741836 274210 12 12 20 85 SRX3341225 Unrestricted 18.82 Metatranscriptome 3300016795 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in ATCC medium 1525, 20 C and 195 ?mol photons light - Mayorella sp. SH-02190019 (MMETSP0417) National Center for Genome Resources 3300016795 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh marine 37.26517 -76.38354 21617557 19657 9 4 16 5 0.0 Metatranscriptome 3300006689 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from South Indian Ocean - MP1240 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006689 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -31.13 110.21 48665943 137526 1772 3308 4211 5831 SRX3299153 Unrestricted 0.0 Metatranscriptome 3300036463 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0608M12 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300036463 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8962 -97.0386 102403737 215731 325 825 7874 2151 SRX9140120, SRX9140121 Unrestricted 0.0 Metatranscriptome 3300007325 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S9 Surf_B metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007325 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 142853414 421089 1212 2078 3712 9058 SRX3196620 Unrestricted 0.0 Metatranscriptome 3300018599 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS675_3p0_dT J. Craig Venter Institute (JCVI) 3300018599 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 62.09708 18.5427 57864022 133040 197 256 346 355 0.0 Metatranscriptome 3300019122 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS677_0p1 J. Craig Venter Institute (JCVI) 3300019122 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 58.581234 18.232801 87662925 251383 6 6 217 400 0.0 Metatranscriptome 3300006575 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006575 Metatranscriptome Analysis megahit v. 0.2.0 No Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil 45.54 -73.72 638711503 2258637 135 127 296 406 SRX2522008 Unrestricted 0.0 Metatranscriptome 3300017292 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium, 13 C, 21 psu salinity and 616 ?mol photons light - Odontella aurita 1302-5 (MMETSP0015_2) National Center for Genome Resources 3300017292 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 44.65 -124.53 45438440 50535 8 3 13 2 0.0 Metatranscriptome 3300036288 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen6, Rep 3, Chloramphenicol (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036288 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 15432394 17259 3 0 6 4 SRX8381243, SRX8381244 Unrestricted 0.0 Metatranscriptome 3300026500 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 54R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026500 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 263180583 544433 173 35 261 509 SRX4795924 Unrestricted 23.52 Metatranscriptome 3300046078 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-198 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046078 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4199 -64.1151 183557148 433102 660 32 1259 630 Unrestricted 19.58 Metatranscriptome 3300037889 *Microbiome Permanent Draft Marine planktonic microbial communities from Bay of Bengal, Indian Ocean Metatranscriptome of marine planktonic microbial communities from Bay of Bengal, Indian Ocean - 3U (SRX5580375-SRR8790600) Nanyang Technological University 3300037889 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. released by JGI data releasing policy Yes Yes flauro@ntu.edu.sg Federico Lauro No Environmental Aquatic Unclassified Marine Unclassified Marine planktonic 5.91 89.6 72521877 328352 1384 183 3903 2767 0.0 Metatranscriptome 3300018902 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_066 - TARA_N000000790 (ERX1789490-ERR1719234) Canada's Michael Smith Genome Sciences Centre 3300018902 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -34.9363 17.9366 304941405 639871 2 14 2 92 0.0 Metatranscriptome 3300016815 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in L1 medium w/o silica, 20 C, 35 psu salinity and 706 ?mol photons light - Ostreococcus lucimarinus clade A BCC 118000 (MMETSP0939) National Center for Genome Resources 3300016815 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 3.145 42.488 12385847 10917 13 2 25 13 0.0 Metatranscriptome 3300061839 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 85_hairyvetch_1_T21 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061839 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 43122511 100174 86 58 520 464 Unrestricted 204.06 Metatranscriptome 3300048673 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Metatranscriptome of soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048673 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.3476 -119.2808 57546972 110743 39 4 133 33 Unrestricted 81.15 Metatranscriptome 3300001804 *Microbiome Permanent Draft Microbial community impact on carbon sequestration in managed wetland Carbon farming Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk Metatranscriptome (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300001804 Metatranscriptome Analysis No Yes sgtringe@lbl.gov, stringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Wetland 38.107 -121.6475 12924761 34118 14 142 2785 1806 SRX3312991 Unrestricted 0.0 Metatranscriptome 3300030696 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 3_T2E_ScyKB8 developmental time series (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030696 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 76777770 98928 21 27 354 325 SRX4645831 Unrestricted 0.0 Metatranscriptome 3300036457 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036457 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 59.9989 10.7903 104825114 226034 630 270 1549 1357 SRX8132578 Unrestricted 0.0 Metatranscriptome 3300003245 *Microbiome Permanent Draft Freshwater sediment microbial communities from Taif River, Saudi Arabia, that are influenced by wastewater discharge Lotic sediment microbial communities from Taif River, Saudi Arabia - Lab simulation Sediment ColumnT-7K5-0 454 Life Sciences 3300003245 Metatranscriptome Analysis No Yes lidong460@gmail.com Dong Li No Engineered Wastewater Dissolved organics (aerobic) Nutrient removal Unclassified Freshwater sediment 21.342219 40.479289 6-8 0 0 0 0 0 0 0.0 Metatranscriptome 3300030818 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T22 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030818 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 32303791 60402 75 42 161 226 SRX5794466 Unrestricted 17.11 Metatranscriptome 3300011306 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S23 DCM_B metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011306 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 67667272 154173 120 69 1445 2529 SRX2524444 Unrestricted 0.0 Metatranscriptome 3300008544 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.9.4OB.15dpc CCME-COLORADO 3300008544 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 1485806 6459 34 0 395 9 0.0 Metatranscriptome 3300016833 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in L1 medium w/o silica, 20 C, 35 psu salinity and 731 ?mol photons light - Ostreococcus mediterraneus clade D RCC 2596 (MMETSP0932) National Center for Genome Resources 3300016833 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 3.6 43.4 13757018 12314 7 1 9 1 0.0 Metatranscriptome 3300030850 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB1 SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030850 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7184 6.3471 664389864 1755879 3543 1472 7108 3188 SRX3350655 Unrestricted 0.0 Metatranscriptome 3300047590 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_7_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047590 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 80351860 129795 2 0 14 6 Restricted 223.45 Metatranscriptome 3300035631 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_0200_MSt5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035631 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 83870104 199161 1 1 54 1 SRX8243098 Unrestricted 236.1 Metatranscriptome 3300019051 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_040 - TARA_N000000064 (ERX1782232-ERR1712227) Canada's Michael Smith Genome Sciences Centre 3300019051 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 17.4825 67.9869 748198868 1683991 130 48 575 791 0.0 Metatranscriptome 3300031497 *Microbiome Permanent Draft Soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - STER_R5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031497 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thb15@psu.edu Terrence Bell No Engineered Artificial ecosystem Surface biofilm Soil microcosm Unclassified soil 40.7997 -77.8629 11089712 16357 24 0 62 9 SRX5811528 Unrestricted 258.86 Metatranscriptome 3300022510 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-M (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022510 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 97563990 224402 525 650 12659 4567 SRX4402931 Unrestricted 0.0 Metatranscriptome 3300017004 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Chesapeake Bay, Maryland in Filtered Sea water, 0.001% nutritional yeast, rice grains, 18 C, 36 psu salinity and 376 ?mol photons light - Paraphysomonas bandaiensis Caron Lab Isolate (MMETSP1103) National Center for Genome Resources 3300017004 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 30214885 25970 28 12 58 23 0.0 Metatranscriptome 3300021934 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S18 C1 B14 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021934 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 47.570082 -12.110403 151158911 282320 87 91 208 284 SRX5204347 Unrestricted 0.0 Metatranscriptome 3300052649 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Southern Region, Iceland - Sphagnum auriculatum 2_AUR_ICE (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052649 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.11382 -20.49606 212944193 424994 104 75 348 346 Unrestricted 75.65 Metatranscriptome 3300048605 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_1_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048605 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 27192293 38753 1 0 10 3 Restricted 296.08 Metatranscriptome 3300010981 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-7 (Eukaryote Community Metatranscriptome) (version 4) DOE Joint Genome Institute (JGI) 3300010981 Metatranscriptome Analysis MEGAHIT v. 1.0.4b No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 18.7998 -20.70285 789599455 1726893 643 905 1017 2312 SRX5724273 Unrestricted 0.0 Metatranscriptome 3300052758 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_56B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052758 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Bulk soil Soil 38.992973 -123.067448 158476621 408125 237 254 3088 1428 Unrestricted 58.24 Metatranscriptome 3300047616 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_3_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047616 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 86072810 128730 1 1 13 0 Restricted 73.24 Metatranscriptome 3300012711 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES133 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012711 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 143656268 295178 102 178 942 3037 SRX3011164 Unrestricted 0.0 Metatranscriptome 3300018787 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_011 - TARA_X000001288 (ERX1789595-ERR1719164) Canada's Michael Smith Genome Sciences Centre 3300018787 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 41.6686 2.7996 160167074 428321 16 17 37 186 0.0 Metatranscriptome 3300016900 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in K medium, 20 C, 35 psu salinity and 115 ?mol photons light - unclassified eukaryote RCC 1024 (MMETSP1329) National Center for Genome Resources 3300016900 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -8.33333333 -141.25 19687222 28957 7 1 14 1 0.0 Metatranscriptome 3300003527 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS2_TP1_13L 3300003527 Metatranscriptome Analysis CLC genomics workbench 7.0 released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933251 -130.01379 2127299 7508 43 1 82 6 0.0 Metatranscriptome 3300023436 *Microbiome Permanent Draft Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Sorghum rhizosphere microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B2.stno.R1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300023436 Metatranscriptome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes colemanderr@gmail.com Devin Coleman-Derr No Host-associated Plants Rhizosphere Roots Unclassified sorghum rhizosphere 36.3390586 -120.12031 15805537 31351 622 1219 3550 3147 0.0 Metatranscriptome 3300046437 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_40_Fire (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046437 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1525 -81.3652 26290692 56885 206 183 1245 1012 Unrestricted 102.25 Metatranscriptome 3300033534 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_28AUG2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300033534 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.372 261627893 470562 130 125 244 692 SRX7706878 Unrestricted 40.87 Metatranscriptome 3300028160 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0688-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028160 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 187176728 317493 17 16 12 85 SRX5253818 Unrestricted 83.5 Metatranscriptome 3300008429 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - E16.FECAL.14dpc CCME-COLORADO 3300008429 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 7720252 29688 42 1 1163 6 0.0 Metatranscriptome 3300030949 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Humus C3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030949 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr; ake.olson@slu.se Francis M. Martin; Ake Olson No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 372471662 955593 1660 448 3353 907 SRX3345044 Unrestricted 0.0 Metatranscriptome 3300048951 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 28 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048951 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 42.4295 -81.2044 27497352 67242 63 1 191 42 Restricted 31.76 Metatranscriptome 3300016677 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES072 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016677 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 46.041 -89.686 5393199 12889 8 12 469 1254 SRX3780238 Unrestricted 0.0 Metatranscriptome 3300031131 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T14 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031131 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 25540269 48463 59 20 138 160 SRX5794362 Unrestricted 22.62 Metatranscriptome 3300018746 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_135 - TARA_N000002179 (ERX1789625-ERR1719155) Canada's Michael Smith Genome Sciences Centre 3300018746 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 32.9986 -121.7698 143890085 364253 9 11 22 183 0.0 Metatranscriptome 3300038294 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_OW2_C1_D6_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038294 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 25522782 51711 343 145 3780 396 SRX9391588 Unrestricted 290.4 Metatranscriptome 3300002594 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS903_80_12H 3300002594 Metatranscriptome Analysis released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 3566780 11944 188 3 316 1 0.0 Metatranscriptome 3300046299 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_6_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046299 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 53172194 95635 2 0 26 4 Restricted 187.3 Metatranscriptome 3300046624 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-140 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046624 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4615 -64.2246 142720507 308769 1012 54 1731 680 Unrestricted 16.26 Metatranscriptome 3300043814 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_21 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043814 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 100847495 232593 176 346 2246 1779 Unrestricted 62.6 Metatranscriptome 3300006938 *Microbiome Permanent Draft Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, for analyzing deforestation at different spatial scales Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A001 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300006938 Metatranscriptome Analysis megahit v. 0.2.0 No Yes nusslein@microbio.umass.edu Nusslein, Klaus, Klaus Nusslein No Environmental Terrestrial Tropical forest Soil Unclassified Tropical rainforest soil -10.0 -62.0 139723204 532902 12792 2397 53391 7183 SRX5329106 Unrestricted 0.0 Metatranscriptome 3300030558 *Microbiome Permanent Draft Metatranscriptome of decayed wood fungal communities from Pinus contorta in National Forests from Montana, United States Metatranscriptome of decayed wood fungal communities from Pinus contorta in Tenderfoot Creek Experimental Forest, Montana, United States - TCEF2-2E (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030558 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes dcullen@wisc.edu Daniel Cullen No Host-associated Plants Stem Phyllosphere Wood decay decayed wood 46.9233 -110.8694 141256241 265076 8 2 28 24 SRX4804166 Unrestricted 0.0 Metatranscriptome 3300053164 *Microbiome Permanent Draft Hydrothermal vents viral and microbial communities from various locations in Pacific Ocean Metatranscriptome of hydrothermal vent plume microbial communities from Gulf of California, Mexico - CTD-FK190211-025-400m-0.65 (Metagenome Metatranscriptome) (Annotation) DOE Joint Genome Institute (JGI) 3300053164 Metatranscriptome Analysis megahit v. 2021-10-08 22:27:25 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes randerson@carleton.edu Rika Anderson No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vent plume 23.95663 -108.86187 148087066 239238 33 10 317 153 Restricted 0.0 Metatranscriptome 3300003740 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_55_12H Marine Biological Laboratory 3300003740 Metatranscriptome Analysis CLC Genomics WB7 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 1398616 4057 91 2 184 4 0.0 Metatranscriptome 3300016701 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Metatranscriptome of peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin10_30_metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016701 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 189577789 444017 96 117 15115 994 SRX3204288 Unrestricted 0.0 Metatranscriptome 3300007228 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 8/11/14 A brown RNA (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007228 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ebyoung@uwm.edu Erica Young, Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 192131523 511920 1856 1865 5360 8526 SRX5628651 Unrestricted 0.0 Metatranscriptome 3300060333 *Microbiome Permanent Draft Sediment microbial communities from the PNNL SFA Hanford 300 Area, Columbia River, WA, USA Metatranscriptome of sediment microbial communities from the PNNL SFA Hanford 300 Area, Columbia River, WA, USA - Surf Sed B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300060333 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes eroden@geology.wisc.edu Eric Roden No Environmental Aquatic River Freshwater Sediment Sediment 46.467778 -119.464444 70753313 166009 321 519 2118 2322 Restricted 97.14 Metatranscriptome 3300017177 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in GSe medium with ammonium, 15 C, 32 psu salinity and 117 ?mol photons light - Pelagococcus subviridis CCMP 1429 (MMETSP0883) National Center for Genome Resources 3300017177 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 49.9166 -145.1166 24652296 34735 2 2 5 2 0.0 Metatranscriptome 3300012873 *Microbiome Permanent Draft Synthetic bacterial communities of pure cultures isolated from sediment of Lake Washington, USA Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under low oxygen conditions - MT methane_oxidizing 4strains_1hour-b (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012873 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes milachis@u.washington.edu Ludmila Chistoserdova No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 47.6553 -122.3035 18564559 48281 0 0 243 10 SRX3015535 Unrestricted 0.0 Metatranscriptome 3300021291 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 100m 12015 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021291 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.6907 -122.3448 65529902 151261 166 108 6892 3536 SRX4010499 Unrestricted 0.0 Metatranscriptome 3300030611 *Microbiome Permanent Draft Metatranscriptome of decayed wood fungal communities from Pinus contorta in National Forests from Montana, United States Metatranscriptome of decayed wood fungal communities from Pinus contorta in Bitterroot National Forest, Montana, United States - GP1-1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030611 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes dcullen@wisc.edu Daniel Cullen No Host-associated Plants Stem Phyllosphere Wood decay decayed wood 45.7544 -113.9092 429300449 868333 52 31 96 140 SRX5250623 Unrestricted 0.0 Metatranscriptome 3300028134 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - WCR_12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028134 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran Yes 31332186 Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 413562812 758015 177 25 304 542 SRX5172115 Unrestricted 50.74 Metatranscriptome 3300017319 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in f/2 medium with seawater, 0.4uM P, 14 C, 36 psu salinity and 546 ?mol photons light - Ditylum brightwellii GSO104 (MMETSP1012) National Center for Genome Resources 3300017319 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 41.325 -70.57 42620984 58946 16 17 50 31 0.0 Metatranscriptome 3300021889 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-3S (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021889 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 107710462 174848 73 91 150 367 SRX5203104 Unrestricted 0.0 Metatranscriptome 3300017220 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/4 medium with seawater, at 20 C, 34 psu salinity and 615 ?mol photons light - Goniomonas pacifica CCMP 1869 (MMETSP0107_2) National Center for Genome Resources 3300017220 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 38848367 59481 41 19 86 44 0.0 Metatranscriptome 3300019190 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZE3 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019190 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil Rhizosphere 49.0431 13.617 23637715 53019 12 94 509 765 SRX3937240 Unrestricted 0.0 Metatranscriptome 3300008387 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34700 J. Craig Venter Institute (JCVI) 3300008387 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 8365 29 0 0 1 0 0.0 Metatranscriptome 3300047428 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81957d84-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047428 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 584577720 1455162 612 312 3107 1865 Unrestricted 23.62 Metatranscriptome 3300005212 *Microbiome Permanent Draft Cyanobacterial communities from the Joint Genome Institute, California, USA Cyanobacterial communities from the Joint Genome Institute, California, USA - FECB-27 Dark/N- metaT (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300005212 Metatranscriptome Analysis megahit v. 0.2.0 No Yes mhess@lbl.gov, mhess@ucdavis.edu Matthias Hess No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Cyanobacterial 37.9313884 -122.0239394 35000295 76390 131 13 459 49 Unrestricted 0.0 Metatranscriptome 3300037960 *Microbiome Permanent Draft Marine planktonic microbial communities from Bay of Bengal, Indian Ocean Metatranscriptome of marine planktonic microbial communities from Bay of Bengal, Indian Ocean - 3Q (SRX5580373-SRR8790602) Nanyang Technological University 3300037960 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. released by JGI data releasing policy Yes Yes flauro@ntu.edu.sg Federico Lauro No Environmental Aquatic Unclassified Marine Unclassified Marine planktonic 5.86 89.25 65576245 305270 1157 158 3413 2354 0.0 Metatranscriptome 3300018844 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_102 - TARA_N000001656 (ERX1782100-ERR1711982) Canada's Michael Smith Genome Sciences Centre 3300018844 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -5.2669 -85.2732 177230107 480813 109 66 440 766 0.0 Metatranscriptome 3300016930 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/4 medium with seawater, at 20 C, 34 psu salinity and 257 ?mol photons light - Pteridomonas danica PT (MMETSP0102) National Center for Genome Resources 3300016930 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 27447311 31190 43 1 75 1 0.0 Metatranscriptome 3300030953 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E4_S_5 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030953 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 590079411 2117453 249 373 473 1019 SRX3341221 Unrestricted 0.0 Metatranscriptome 3300031340 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CBN3_322_32.3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031340 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 80.9595 -132.1842 143948794 296363 131 37 388 1273 SRX6411910 Unrestricted 25.45 Metatranscriptome 3300030878 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030878 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 59.9979 10.7895 276657508 673155 1 0 16 1 SRX5351833 Unrestricted 0.0 Metatranscriptome 3300019165 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Soil microbial communities from Bohemian Forest, Czech Republic - CSA1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019165 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 49.043 13.6183 16341851 35693 22 189 1096 1079 SRX3937184 Unrestricted 0.0 Metatranscriptome 3300034666 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034666 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 366955569 884430 258 1100 5413 5319 SRX7519997 Unrestricted 22.96 Metatranscriptome 3300004466 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 80 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004466 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 50467548 167175 4143 1309 13787 2600 Unrestricted 0.0 Metatranscriptome 3300016875 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in L1 medium with seawater, 20 C, 33 psu salinity and 577 ?mol photons light - Minutocellus polymorphus CCMP 3303 (MMETSP1434) National Center for Genome Resources 3300016875 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -17.5 11.25 10464313 17162 3 5 4 3 0.0 Metatranscriptome 3300045913 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Metatranscriptome of soil microbial communities from peatland in Alberta, Canada - SB-U-VEG 0-10 cm (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300045913 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4621 -114.8803 51213561 122024 210 208 523 1006 Unrestricted 89.15 Metatranscriptome 3300041720 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_15 MetaT AgResearch, New Zealand, Mosgeil 3300041720 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 59596141 127273 98 20 883 100 0.0 Metatranscriptome 3300008899 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of annulated tree boas from Steinhart Aquarium in San Francisco, USA - CAS04_Heart University of California, San Francisco 3300008899 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Heart Circulatory system Unclassified Heart 3274792 10062 0 0 1 0 SRX170644 0.0 Metatranscriptome 3300030982 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030982 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 59.9989 10.7903 21768452 48777 104 195 694 963 SRX5351404 Unrestricted 0.0 Metatranscriptome 3300009726 *Microbiome Permanent Draft Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling - T5-LLNH4 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009726 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes milachis@u.washington.edu Ludmila Chistoserdova No Engineered Modeled Plant nodule Simulated communities (microbial mixture) Unclassified Methane-oxidizing 47.6193 -122.2449 32876866 72570 1 0 635 7 SRX2525512 Unrestricted 0.0 Metatranscriptome 3300007719 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS907_Anemone_RNA_Filter2 CLC_assembly Marine Biological Laboratory 3300007719 Metatranscriptome Analysis CLC genomics workbench, v. 7.0 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse vent fluid, hydrothermal vents 45.9332 -130.0138 254420 543 12 6 104 9 0.0 Metatranscriptome 3300016731 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041412AT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016731 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 224452135 505898 117 222 705 3386 SRX3781500 Unrestricted 0.0 Metatranscriptome 3300016964 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in K medium, 22 C, 35 psu salinity and 348 ?mol photons light - Bolidomonas sp. RCC2347 (MMETSP1320) National Center for Genome Resources 3300016964 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 35.66666667 14.1 18966392 23859 3 11 1 15 0.0 Metatranscriptome 3300021276 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.491 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021276 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.27 -123.946 57834377 134205 426 1292 4472 7429 SRX4017791 Unrestricted 0.0 Metatranscriptome 3300031662 *Microbiome Permanent Draft Freshwater RNA viral communities from high-CO2 subsurface aquifer at Crystal Geyser, Utah, USA Metatranscriptome of freshwater viral communities from high-CO2 subsurface aquifer at Crystal Geyser, Utah, USA - CG04 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031662 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes nckyrpides@lbl.gov Nikos Kyrpides No Environmental Aquatic Groundwater Deep subsurface Unclassified subsurface water 38.9383 -110.1342 129679615 233954 53 64 190 257 SRX8128254 Unrestricted 0.0 Metatranscriptome 3300051604 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 72_50_10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051604 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 62140121 164797 197 192 1373 1123 Unrestricted 88.3 Metatranscriptome 3300009580 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_11_14_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009580 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment Wetland 41.2239 -82.3039 86370456 187520 395 1181 33826 10775 SRX2525131 Unrestricted 0.0 Metatranscriptome 3300031101 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T18 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031101 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 38540254 70401 46 20 96 130 SRX5352188 Unrestricted 14.37 Metatranscriptome 3300021863 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S20 C1 B20 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021863 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 49.915062 -16.356662 9834888 19899 30 29 68 80 SRX5204608 Unrestricted 0.0 Metatranscriptome 3300042417 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_NB_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042417 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 38313320 47302 2 0 12 3 Unrestricted 260.89 Metatranscriptome 3300003679 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_135m_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003679 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 21698488 48521 227 24 846 149 Unrestricted 0.0 Metatranscriptome 3300045472 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P35SSC1_191108_i (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300045472 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 67306792 166391 51 156 1193 741 SRX20650990 Unrestricted 133.96 Metatranscriptome 3300061809 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 89_sorghum_3_T21 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061809 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 52430085 124711 94 57 735 441 Unrestricted 167.75 Metatranscriptome 3300018932 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_039 - TARA_N000000051 (ERX1782293-ERR1711916) Canada's Michael Smith Genome Sciences Centre 3300018932 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 18.5745 66.4895 336910556 832039 175 167 470 822 0.0 Metatranscriptome 3300017060 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Baffin Bay in L1 medium with sea water and antibiotics, 6 C, 36 psu salinity and 193 ?mol photons light - unclassified eukaryote CCMP 2097 (MMETSP0977) National Center for Genome Resources 3300017060 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 77.0014 -77.2383 27082276 30179 2 1 3 2 0.0 Metatranscriptome 3300017117 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater w/o silicate, 18 C, 20 psu salinity and 132 ?mol photons light - Emiliania huxleyi 379 (MMETSP0994) National Center for Genome Resources 3300017117 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 50.1669 -4.2504 23836039 32540 4 1 4 1 0.0 Metatranscriptome 3300030671 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from Antarctic Ocean - PS103-34 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030671 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified marine -71.3639 -13.979 1136468647 1980625 57 5 60 165 SRX5356524 Unrestricted 0.0 Metatranscriptome 3300031827 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLI4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031827 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 49.0427 13.6161 9850419 19590 190 357 2447 1841 SRX5784748 Unrestricted 0.0 Metatranscriptome 3300017379 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of freshwater ice eukaryotic communities from Arabian Sea in f/2 medium with sea water w/o silica, 3 C, 3 psu salinity and 697 ?mol photons light - Peridinium aciculiferum PAER-2 (MMETSP0371) National Center for Genome Resources 3300017379 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Ice Freshwater Unclassified freshwater ice 18.6 59.85 63268604 95554 2 1 1 1 0.0 Metatranscriptome 3300030570 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cnb12 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030570 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 408522363 882476 167 212 2629 1002 SRX4547100 Unrestricted 0.0 Metatranscriptome 3300051254 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Schonbrunner Wald, Bavaria, Germany - BW_CL_031R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051254 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.907397 13.559695 86012127 221812 271 254 1315 1071 Unrestricted 82.4 Metatranscriptome 3300052378 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_162B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052378 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Bulk soil Soil 38.992973 -123.067448 64383562 169789 185 210 1245 1186 Unrestricted 197.03 Metatranscriptome 3300020070 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300020070 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil corn rhizosphere 42.3948 -85.3738 1031651714 2304931 622 3414 19100 38285 SRX4925173, SRX4925172 Unrestricted 0.0 Metatranscriptome 3300012970 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012970 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 39.2637 -76.0017 328238047 733669 131 359 3299 8061 SRX3007435 Unrestricted 0.0 Metatranscriptome 3300046176 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_2_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046176 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 27283197 50568 2 1 13 3 Restricted 117.51 Metatranscriptome 3300017095 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in K medium w/o silicate, at 23 C, 35 psu salinity and 525 ?mol photons light - Bigelowiella natans CCMP 1242 (MMETSP1358) National Center for Genome Resources 3300017095 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 33899017 42795 9 8 7 12 0.0 Metatranscriptome 3300021904 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S5 C1 B9 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021904 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 34.719725 -14.260068 131999577 214037 103 55 199 207 SRX5295543 Unrestricted 0.0 Metatranscriptome 3300007166 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_top_diel_T=1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007166 Metatranscriptome Analysis megahit v. 0.2.0 No Yes binskeep@montana.edu, binskeep@montana.edu; jim.fredrickson@pnnl.gov William Inskeep, William P. Inskeep; Jim Fredrickson No Environmental Aquatic Unclassified Thermal springs Unclassified Thermal springs 44.7315 -110.7113 38597480 92697 2933 13 6435 37 SRX3200210 Unrestricted 0.0 Metatranscriptome 3300059624 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 146R_CW_T3_R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059624 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 411971138 1002115 824 388 2822 2408 Unrestricted 116.89 Metatranscriptome 3300010082 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_8_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010082 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 43181598 101430 193 609 21754 5393 Unrestricted 0.0 Metatranscriptome 3300017034 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in L1 medium with seawater, 20 C, 33 psu salinity and 557 ?mol photons light - Craspedostauros australis CCMP 3328 (MMETSP1442) National Center for Genome Resources 3300017034 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -38.45 145.3333 18870909 29097 11 14 19 19 0.0 Metatranscriptome 3300028077 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepC_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028077 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 100412467 189593 47 77 181 372 SRX5245680 Unrestricted 23.23 Metatranscriptome 3300048052 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P35SSC1_190914_c (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048052 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 9211471 21252 45 108 441 536 SRX20650845 Unrestricted 162.98 Metatranscriptome 3300026564 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Miss_RepA_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026564 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 187406270 379380 40 157 687 1212 SRX4797429 Unrestricted 26.48 Metatranscriptome 3300035601 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R1105M20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035601 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0386 43775914 88501 304 428 6602 1475 SRX8235722 Unrestricted 74.97 Metatranscriptome 3300049700 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Weichs, Bavaria, Germany - PB8_MT_240418 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049700 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 48.39537892 11.44760761 113711596 237346 8 6 119 17 Unrestricted 42.28 Metatranscriptome 3300052770 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_78 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052770 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 35723989 94621 57 97 464 535 Unrestricted 126.73 Metatranscriptome 3300016803 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from English Channel grown at 4 C, 0 psu salinity and 123 ?mol photons light - Minchinia chitonis (MMETSP0186) National Center for Genome Resources 3300016803 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 50.45876 -3.54072 87033 336 1 13 2 5 0.0 Metatranscriptome 3300012771 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Croche, Canada - C_130625_E_mt (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012771 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.8319 -72.5 158450637 362530 433 238 1659 3716 SRX3015158 Unrestricted 0.0 Metatranscriptome 3300043791 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_269 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043791 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 44605134 101841 198 421 1851 2117 Unrestricted 56.41 Metatranscriptome 3300046621 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-123 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046621 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4479 -64.2031 93519233 219109 895 35 1570 578 Unrestricted 15.61 Metatranscriptome 3300038291 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_OW2_C1_D3_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038291 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 93203255 197628 508 1672 5563 4736 SRX9391582 Unrestricted 144.08 Metatranscriptome 3300037655 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_N3_C1_D5_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037655 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 66962402 143983 318 553 4100 1543 SRX9385686 Unrestricted 233.99 Metatranscriptome 3300011278 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP199 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011278 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 7.32 -26.0 17641608 36433 15 34 227 1571 SRX3299179 Unrestricted 0.0 Metatranscriptome 3300002591 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS903_55_13H 3300002591 Metatranscriptome Analysis released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 2394046 5673 76 2 171 3 0.0 Metatranscriptome 3300002690 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Fungi-associated bovine rumen microbiome from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis - Pilot-5 (Eukaryote Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002690 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes mhess@lbl.gov, mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 40.102108 -88.227299 25036107 86386 0 1 9 22 SRX2554954 Unrestricted 0.0 Metatranscriptome 3300010110 *Microbiome Permanent Draft Soil microbial communities from various locations in USA and Cambodia to study soil gas exchange rates Soil microbial communities from Illinois, USA to study soil gas exchange rates - BV-IL-AGR metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010110 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes laurameredith@email.arizona.edu Laura Meredith No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.0062 -88.2904 65589854 157521 217 934 23228 7562 SRX2525514 Unrestricted 0.0 Metatranscriptome 3300010067 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_2_8_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010067 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 25291300 60278 196 495 26212 4531 Unrestricted 0.0 Metatranscriptome 3300036548 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen2, Rep 1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036548 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 82155502 119656 7 1 121 0 SRX8381891 Unrestricted 50.28 Metatranscriptome 3300031408 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_L6_0mM_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031408 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 17929367 28410 0 0 2 4 SRX5783467 Unrestricted 34.4 Metatranscriptome 3300030614 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Dnb10 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030614 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 478088071 1081513 118 125 432 509 SRX5245089 Unrestricted 0.0 Metatranscriptome 3300021294 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.264 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021294 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.286 -124.052 107907025 248945 147 1130 2432 5587 SRX4016021 Unrestricted 0.0 Metatranscriptome 3300048676 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Metatranscriptome of soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048676 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.3476 -119.2808 68899841 113766 32 1 78 16 Unrestricted 46.97 Metatranscriptome 3300016704 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Indian Ocean in ATCC medium 790BY, 23 C, 25 psu salinity and 299 ?mol photons light - Schizochytrium aggregatum ATCC 28209 (MMETSP0962) National Center for Genome Resources 3300016704 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 8.0 53.0 4382490 7316 0 11 0 21 0.0 Metatranscriptome 3300002665 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI074_200m_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002665 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 9352841 19904 10 8 151 110 Unrestricted 0.0 Metatranscriptome 3300021235 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from nest from French Guiana - FG16_2_6 mRNA SA University of Luxembourg 3300021235 Metatranscriptome Analysis CLC Genomics Workbench Version 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 5.27916667 -53.13777778 62603974 219303 0 2 3 7 0.0 Metatranscriptome 3300010984 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-7 (Eukaryote Community Metatranscriptome) (version 5) (version 2) DOE Joint Genome Institute (JGI) 3300010984 Metatranscriptome Analysis MEGAHIT v. 1.0.4b No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 18.7998 -20.70285 790672345 1729572 643 898 1016 2314 SRX5724273 Unrestricted 0.0 Metatranscriptome 3300032149 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB4_1000m_931 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032149 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 75.0007 -150.0027 174630018 367696 89 49 666 815 SRX6422161 Unrestricted 17.36 Metatranscriptome 3300032465 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032465 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Unclassified Phyllosphere Unclassified phyllosphere 42.39 -85.37 237665463 425511 63 49 81 333 SRX7077705 Unrestricted 105.21 Metatranscriptome 3300012714 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES125 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012714 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 146215296 301989 84 128 640 4298 SRX3011099 Unrestricted 0.0 Metatranscriptome 3300036155 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp01_R13 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036155 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 116196563 257148 366 115 717 1662 SRX8835192 Unrestricted 35.33 Metatranscriptome 3300011303 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S21 DCM_B metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011303 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 68585646 152108 52 55 1512 1790 SRX2524532 Unrestricted 0.0 Metatranscriptome 3300000414 *Microbiome Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Thermokarst Bog cDNA B4 Metatranscriptome DOE Joint Genome Institute (JGI) 3300000414 Metatranscriptome Analysis No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 0 0 0 0 0 0 0.0 Metatranscriptome 3300016836 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in FSW medium with nutritional yeast, at 18 C, 36 psu salinity and 377 ?mol photons light - Cafeteria sp. Caron Lab Isolate (MMETSP1104) National Center for Genome Resources 3300016836 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 19310849 24835 16 6 24 2 0.0 Metatranscriptome 3300006395 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Cas_02_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006395 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 259070322 671484 559 360 1639 773 SRX2751977 Unrestricted 0.0 Metatranscriptome 3300031017 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031017 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 59.997 10.7902 32804604 77332 151 185 714 1044 SRX5351395 Unrestricted 0.0 Metatranscriptome 3300033531 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_28AUG2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300033531 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3951 -85.3736 145421860 257177 138 132 252 720 SRX7706879 Unrestricted 28.77 Metatranscriptome 3300048954 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 36 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048954 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 42.4305 -81.2062 14637871 36102 57 6 179 57 Restricted 40.07 Metatranscriptome 3300032490 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_12JUL2016_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032490 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Unclassified Phyllosphere Unclassified phyllosphere 42.39 -85.37 216356974 371432 88 104 136 624 SRX7077708 Unrestricted 93.88 Metatranscriptome 3300037700 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen9, Rep 2, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037700 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 40081443 38295 11 0 33 14 SRX8381530, SRX8381529 Unrestricted 0.0 Metatranscriptome 3300018725 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_142 - TARA_N000003104 (ERX1782256-ERR1712230) Canada's Michael Smith Genome Sciences Centre 3300018725 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 25.6168 -88.4532 143885649 293378 112 16 399 399 0.0 Metatranscriptome 3300031502 *Microbiome Permanent Draft Soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_N_R4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031502 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thb15@psu.edu Terrence Bell No Engineered Artificial ecosystem Surface biofilm Soil microcosm Unclassified soil 40.7997 -77.8629 16193875 29758 68 33 568 449 SRX5811866 Unrestricted 80.07 Metatranscriptome 3300006360 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Val_03_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006360 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 90303293 241888 258 160 1216 444 SRX2752019 Unrestricted 0.0 Metatranscriptome 3300031195 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_D6_32mM_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031195 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 24284283 36477 0 0 2 13 SRX6408186 Unrestricted 25.89 Metatranscriptome 3300001210 *Microbiome Permanent Draft Contaminated soil microbial communities from Tipperary, Ireland, in a timber treatment facility Contaminated soil microbial communities from Tipperary, Ireland - enriched with phenanthrene, pooled cDNA University of Liverpool 3300001210 Metatranscriptome Analysis released per JGI data release policy No Yes mardiana.mohd-ashaari@ucdconnect.ie Mardiana Mohd Ashaari No Environmental Terrestrial Unclassified Soil Contaminated Contaminated soil 52.512199 -8.226278 0 0 0 0 0 0 0.0 Metatranscriptome 3300008927 *Microbiome Permanent Draft Microbial communities from freshwater in the western basin of Lake Erie, USA Microbial communities from freshwater in the western basin of Lake Erie, USA - 973-3 University of Tennessee 3300008927 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.79 -83.33 6544488 12428 32 31 232 392 0.0 Metatranscriptome 3300048522 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_6_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048522 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 18330153 35575 4 0 14 0 Restricted 296.92 Metatranscriptome 3300004327 *Microbiome Permanent Draft Metatranscriptomics studies in sediment microbial communities from the mangroves in Sao Paulo, Brazil Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC2B 3300004327 Metatranscriptome Analysis IDBA released by JGI data releasing policy No Yes luc.g.cabral@gmail.com Luc?lia Cabral, Lucelia Cabral No Environmental Aquatic Intertidal zone Marine Mangrove sediment Mangrove sediment -23.8553 -46.1394 26629410 78826 1366 719 5632 2212 0.0 Metatranscriptome 3300041988 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Metatranscriptome of feshwater microbial communities from Virginia, USA - stroublescreek_2019_sw_WHONDRS-S19S_0089 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300041988 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 37.2101 -80.4451 147740800 326711 921 1368 4755 6044 SRX14870777 Unrestricted 50.15 Metatranscriptome 3300005495 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1400(2)_B MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005495 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 60142005 146092 566 11 1841 27 SRX2521782, SRX2521783 Unrestricted 0.0 Metatranscriptome 3300004548 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 74_LOW10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004548 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 40326222 95207 86 9 508 28 SRX2725129 Unrestricted 0.0 Metatranscriptome 3300047613 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_1_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047613 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 22937919 41423 1 0 9 1 Restricted 53.08 Metatranscriptome 3300030967 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 Emin (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030967 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7585 6.3578 490440049 1484186 11121 1148 21567 3407 SRX3351898 Unrestricted 0.0 Metatranscriptome 3300019248 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_2_16_1Ra (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019248 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9228 -106.9513 192954892 464637 98 843 6595 6192 SRX4809457 Unrestricted 0.0 Metatranscriptome 3300046135 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-141 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046135 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4615 -64.2246 97168365 231477 832 40 1490 518 Unrestricted 21.21 Metatranscriptome 3300019054 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_098 - TARA_N000001590 (ERX1782183-ERR1711964) Canada's Michael Smith Genome Sciences Centre 3300019054 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -25.8076 -111.6906 751999509 1840852 145 82 533 842 0.0 Metatranscriptome 3300017001 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium, at 15 C, 36 psu salinity and 651 ?mol photons light - Odontella Sinensis Grunow 1884 (MMETSP0160_2) National Center for Genome Resources 3300017001 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 22211312 34658 38 3 74 3 0.0 Metatranscriptome 3300035342 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0608S20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035342 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8959 -97.0388 29608063 57078 83 283 2783 584 SRX8237146 Unrestricted 84.18 Metatranscriptome 3300026389 *Microbiome Permanent Draft Enriched cultures of PCE-dechlorinating microbial communities from Ithaca, New York, USA Metatranscriptome of enriched cultures of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026389 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes rer26@cornell.edu Ruth Richardson No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified defined medium 42.4447 -76.485 55921905 88244 11 3 182 6 SRX4393182 Unrestricted 172.01 Metatranscriptome 3300046194 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_6_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046194 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 72874744 118963 1 0 26 1 Restricted 91.16 Metatranscriptome 3300004959 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Blanes Bay, Balearic Sea - MPBL130115 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004959 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 41.67 2.8 25147215 90126 1520 1217 3468 5230 SRX3299180 Unrestricted 0.0 Metatranscriptome 3300021857 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Metatranscriptome of freshwater microbial communities from pre-fracked creek in Pennsylvania, United States - WE:C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021857 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Unclassified freshwater 41.6118 -78.4221 129299505 325213 425 2593 10850 13357 SRX4009982 Unrestricted 0.0 Metatranscriptome 3300018743 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_128 - TARA_N000002293 (ERX1782423-ERR1712174) Canada's Michael Smith Genome Sciences Centre 3300018743 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 0.0078 -153.6265 143875459 360220 97 40 404 627 0.0 Metatranscriptome 3300037032 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp01_R25 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037032 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 296173700 591249 265 97 665 1170 SRX8835505 Unrestricted 46.47 Metatranscriptome 3300046113 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-220 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046113 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4604 -64.2162 136649528 310753 427 25 883 420 Unrestricted 19.52 Metatranscriptome 3300004962 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI048_100m_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004962 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 47425718 162042 736 1087 2550 3909 Unrestricted 0.0 Metatranscriptome 3300034395 *Microbiome Permanent Draft Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S10 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034395 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes colin.averill@usys.ethz.ch Colin Averill No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 36.0 -78.0 61064948 135826 7 54 350 208 SRX7586653 Unrestricted 189.89 Metatranscriptome 3300001801 *Microbiome Permanent Draft Microbial community impact on carbon sequestration in managed wetland Carbon farming Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site B1 Bulk Metatranscriptome (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300001801 Metatranscriptome Analysis No Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Wetland 38.1072 -121.6485 1028623 1915 1 5 170 95 SRX3312993 Unrestricted 0.0 Metatranscriptome 3300020100 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um, replicate a, metaT Georgia Genomics Facility 3300020100 Metatranscriptome Analysis Trinity 2.06 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 25950650 69877 3967 350 8654 742 0.0 Metatranscriptome 3300019245 *Microbiome Permanent Draft Tropical peatland microbial communities from different locations Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019245 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes hinsby@gmail.com Hinsby Cadillo-Quiroz No Environmental Terrestrial Wetlands Soil Peat Tropical peatland 3.8381 -73.3194 188895529 445853 798 434 94534 2634 SRX3936992 Unrestricted 0.0 Metatranscriptome 3300046138 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-156 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046138 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4688 -64.2255 106703136 254127 853 50 1495 540 Unrestricted 20.75 Metatranscriptome 3300017572 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 15 C, 28 psu salinity and 329 ?mol photons light - Alexandrium fundyense CCMP 1719 (MMETSP0196) (SRX548999-SRR1294385) National Center for Genome Resources 3300017572 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 43.1 70.782 210485 650 0 0 0 0 0.0 Metatranscriptome 3300052336 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of lake water microbial communities from Sandhills, Nebraska, United States - NSL_Smith_2018 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052336 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@dbi.udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.78581 -102.52354 38809885 95739 485 179 1422 757 Unrestricted 595.75 Metatranscriptome 3300054639 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_TH_037R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300054639 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0695 10.43185 279022828 712653 1003 713 3837 3368 Unrestricted 59.77 Metatranscriptome 3300018847 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_138 - TARA_N000003005 (ERX1789704-ERR1719166) Canada's Michael Smith Genome Sciences Centre 3300018847 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 6.3199 -102.96 194046938 486479 3 20 6 163 0.0 Metatranscriptome 3300002861 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 43 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002861 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 2831572 8283 9 52 575 349 Unrestricted 0.0 Metatranscriptome 3300049112 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 72 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049112 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.9364 -81.6542 13422946 24342 21 8 47 53 Restricted 66.54 Metatranscriptome 3300009239 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from Amazon river, Brazil - RCM11 University of Georgia 3300009239 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic River Freshwater Unclassified River water 593057945 1734890 64 78 1123 488 SRX860944 0.0 Metatranscriptome 3300041985 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Metatranscriptome of feshwater microbial communities from Washington, USA - columbia_2019_sw_WHONDRS-S19S_0074 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300041985 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 46.3763 -119.2729 135309830 301650 347 607 1688 2880 SRX14870310 Unrestricted 42.69 Metatranscriptome 3300005498 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1600(2)_T MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005498 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 55444376 150567 282 29 993 188 SRX2739862 Unrestricted 0.0 Metatranscriptome 3300019063 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS679_3p0 J. Craig Venter Institute (JCVI) 3300019063 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 56.1664 16.378218 4283124 15247 47 52 564 950 0.0 Metatranscriptome 3300008792 *Microbiome Permanent Draft Microbial communities from freshwater in the western basin of Lake Erie, USA Microbial communities from freshwater in the western basin of Lake Erie, USA - 1163-1 University of Tennessee 3300008792 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.46 -82.71 8336686 18364 40 55 254 909 0.0 Metatranscriptome 3300004545 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 52_LOW8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004545 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 36786396 88797 101 19 543 33 SRX2724076 Unrestricted 0.0 Metatranscriptome 3300036809 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of sediment eukaryotic communities from Prado wetlands, California, USA - CSM_Prado_Oct18_AM_1.5z2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036809 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 112883539 206856 19 27 126 63 SRX8741377 Unrestricted 150.14 Metatranscriptome 3300042414 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_NB_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042414 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 43769616 55802 2 0 12 1 Unrestricted 258.08 Metatranscriptome 3300017478 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from La Jolla, California in f/2 medium with natural seawater and antibiotics, no silicate, 22 C, 21 psu salinity and 620 ?mol photons light - Kryptoperidinium foliaceum CCMP 1326 (MMETSP0121_2) National Center for Genome Resources 3300017478 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 32.9 -117.255 66486247 98357 13 12 17 25 0.0 Metatranscriptome 3300037080 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - WOF_Exp1_90M_T0_031018 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037080 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 289069181 621681 1016 99 1889 1693 SRX8841754 Unrestricted 22.85 Metatranscriptome 3300019089 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS853_ls4 J. Craig Venter Institute (JCVI) 3300019089 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 38483878 106889 47 17 70 99 0.0 Metatranscriptome 3300018886 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_038 - TARA_N000000029 (ERX1782302-ERR1711968) Canada's Michael Smith Genome Sciences Centre 3300018886 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 19.0393 64.4913 253471589 626152 135 18 494 656 0.0 Metatranscriptome 3300008609 *Microbiome Permanent Draft Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France - CSM2012-MB-A-D Centre National de la Recherche Scientifique (CNRS) 3300008609 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Microbial mats Freshwater lake 5896750 15318 54 28 684 282 SRX528799 0.0 Metatranscriptome 3300051607 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 72_100_8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051607 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 122320207 321251 215 249 1345 1300 Unrestricted 61.77 Metatranscriptome 3300029640 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20-13C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029640 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Environmental Terrestrial Desert Soil Unclassified soil 33.3049 -116.2547 17899695 33432 117 273 500 1241 SRX5336451 Unrestricted 73.84 Metatranscriptome 3300042493 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_CL14+71_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042493 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 63369982 89113 1 0 1 1 Unrestricted 274.39 Metatranscriptome 3300016967 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in Erdschreiber's Medium, at 22 C, 21 psu salinity and 442 ?mol photons light - Rhodosorus marinus UTEX LB 2760 (MMETSP0315) National Center for Genome Resources 3300016967 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 22426597 33115 12 19 14 28 0.0 Metatranscriptome 3300037596 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Metatranscriptome of lab enriched marine microbial communities from Marineland, Florida, USA - SWA_R4_TP1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037596 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6475 -82.3464 142455106 292149 236 76 511 395 SRX9146655 Unrestricted 49.47 Metatranscriptome 3300028107 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0938-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028107 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 197275252 342496 21 20 16 80 SRX5244904 Unrestricted 85.25 Metatranscriptome 3300006234 *Microbiome Permanent Draft Marine sediment microbial communities from different distances from oil contamination, Gulf of Mexico Marine sediment microbial communities, 1.1 km from oil contamination, elevated hydrocarbon, Gulf of Mexico - BC366 Yale Center for Genome Analysis 3300006234 Metatranscriptome Analysis idba_tran released per JGI data release policy No Yes phu@lbl.gov Ping Hu No Environmental Aquatic Oceanic Marine Oil-contaminated sediment marine 28.3 -88.2 47250031 111166 1690 1959 13783 5230 0.0 Metatranscriptome 3300021313 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.304 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021313 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.27 -123.946 190066344 414601 143 1088 1958 5381 SRX4016152 Unrestricted 0.0 Metatranscriptome 3300048697 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Metatranscriptome of beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - B1_RE2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048697 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Rectum rectum 49.2552 -122.5085 32165574 68144 2 0 69 7 Restricted 88.12 Metatranscriptome 3300004523 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 31_HOW6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004523 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 14934628 37946 595 448 1821 1298 SRX2779925 Unrestricted 0.0 Metatranscriptome 3300036545 *Microbiome Permanent Draft Rumen fluid microbial communities from dairy cows in UC Davis, California, USA Metatranscriptome of rumen fluid microbial communities from dairy cow in UC Davis, California, USA - UCD_Rumen_Seaweed_2631 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300036545 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bmroque@ucdavis.edu Breanna Roque No Host-associated Mammals Stomach Digestive system Rumen fluid rumen fluid 38.5368 -121.7595 194820214 384582 2 24 186 229 Unrestricted 0.0 Metatranscriptome 3300030836 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030836 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 59.9992 10.7901 35948256 82048 94 148 390 752 SRX5351818 Unrestricted 0.0 Metatranscriptome 3300002668 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF131 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002668 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 8064547 22586 182 668 567 2855 SRX2014422 Unrestricted 0.0 Metatranscriptome 3300051257 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 48_50_9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051257 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 213718347 557367 336 237 1960 1655 Unrestricted 35.23 Metatranscriptome 3300037749 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of photosynthetic mat microbial communities from Octopus Spring, YNP, Wyoming, United States - 20090729 0715 sample t11cd (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037749 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 102295867 233633 3 0 52 0 SRX9381210 Unrestricted 164.16 Metatranscriptome 3300017114 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium, 13 C, 21 psu salinity and 436 ?mol photons light - Amphiprora paludosa CCMP 125 (MMETSP1065) National Center for Genome Resources 3300017114 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 41.525 -70.6736 37951714 43925 9 11 17 20 0.0 Metatranscriptome 3300013071 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Organic Plus compost microbial communities from Emeryville, California, USA - RNA 3rd pass 37_C Kraft OP (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013071 Metatranscriptome Analysis megahit v. 1.0.6 No Yes jmgladden@lbl.gov John Gladden No Environmental, Engineered Terrestrial, Solid waste Composting Soil, Mixed feedstock Commercial compost compost 37.83 -122.29 72936163 133270 3 493 106 957 SRX4809043 Unrestricted 0.0 Metatranscriptome 3300037610 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_M1_C1_D1_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037610 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 20592369 37004 438 1384 8612 4360 SRX9382709 Unrestricted 98.42 Metatranscriptome 3300037658 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_N3_C1_D5_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037658 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 35199955 74504 309 248 4977 684 SRX9385715 Unrestricted 339.49 Metatranscriptome 3300003326 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-5-R (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003326 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 20816934 46395 8 26 30 97 SRX2557366 Unrestricted 0.0 Metatranscriptome 3300017193 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Sargasso Sea in f/2 medium with seawater and 400nM iron w/o nitrate, 25 C, 35 psu salinity and 463 ?mol photons light - Thalassiosira oceanica CCMP 1005 (MMETSP0973) National Center for Genome Resources 3300017193 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 33.1833 -65.25 32345451 35321 2 1 1 1 0.0 Metatranscriptome 3300011275 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP2919 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011275 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 29.97 -23.69 10363070 24527 26 38 417 1548 SRX3299579 Unrestricted 0.0 Metatranscriptome 3300029284 *Microbiome Permanent Draft Black Band Disease transitions Coral surface microbial communities from stony corals with Black-band disease (BBD), Florida Keys National Marine Sanctuary, USA - LKH2 University of Florida 3300029284 Metatranscriptome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Coral Cnidaria Surface coral surface 24.5484806 -81.4059137 412381364 787529 1 20 5 47 0.0 Metatranscriptome 3300019223 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA6_MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019223 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 37.43 138.83 170803345 350060 47 59 5784 417 SRX3903411 Unrestricted 0.0 Metatranscriptome 3300046579 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-66 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046579 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4205 -64.1498 89951363 223054 769 24 1214 277 Unrestricted 18.89 Metatranscriptome 3300041429 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass leaf microbial community from Lincoln, Canterbury, New Zealand - RGL17_6 MetaT AgResearch, New Zealand, Mosgeil 3300041429 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 9108918 17343 355 433 1554 896 0.0 Metatranscriptome 3300031071 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031071 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 45864022 81402 56 23 120 190 SRX5794229 Unrestricted 15.56 Metatranscriptome 3300018728 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_109 - TARA_N000001796 (ERX1789465-ERR1719147) Canada's Michael Smith Genome Sciences Centre 3300018728 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 2.0218 -84.5652 135898199 298726 4 92 2 346 0.0 Metatranscriptome 3300026567 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepC_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026567 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 46.1812 -123.1834 217607211 431621 62 181 702 1226 SRX4797117 Unrestricted 20.19 Metatranscriptome 3300021238 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from nest - French Guiana - 6_6 mRNA SA University of Luxembourg 3300021238 Metatranscriptome Analysis CLC Genomics Workbench Version 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 5.06224 -53.047407 60756524 212552 0 0 2 6 0.0 Metatranscriptome 3300028074 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepB_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028074 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 48860924 95384 25 19 92 178 SRX5245635 Unrestricted 20.13 Metatranscriptome 3300036110 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metataranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0606U12re (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036110 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8973 -97.0409 151797215 329727 106 587 1920 2136 SRX8669687 Unrestricted 27.94 Metatranscriptome 3300048963 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 48 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048963 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.7703 -82.3517 12251944 22342 22 6 70 75 Restricted 96.88 Metatranscriptome 3300032468 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_31MAY2016_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032468 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Unclassified Phyllosphere Unclassified phyllosphere 42.39 -85.37 159266536 278984 34 45 38 262 SRX7077521 Unrestricted 120.66 Metatranscriptome 3300012389 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_16_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012389 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 151663915 365574 98 619 4121 6213 Unrestricted 0.0 Metatranscriptome 3300017037 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of freshwater eukaryotic communities from Lake Texoma, Oklahoma in f/2 medium with seawater, 18 C, 18 psu salinity and 199 ?mol photons light - Prymnesium parvum Texoma1 (MMETSP1083) National Center for Genome Resources 3300017037 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified freshwater 33.98 -96.67 31538811 37749 5 5 14 5 0.0 Metatranscriptome 2209111013 *Microbiome Permanent Draft Subtropical soil microbial communities from Bundaberg Australia Subtropical soil microbial communities from Bundaberg Australia-rainforest Australian Genome Research Facility 2209111013 Metatranscriptome Analysis released by Rhiannon Mondav No Yes r.mondav@uq.edu.au, rhiannon.mondav@gmail.com Rhiannon Mondav No Environmental Terrestrial Sand Soil Unclassified Subtropical soil -24.867 152.351 5.5 24947263 56189 21 0 1316 0 0.0 Metatranscriptome 3300030704 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 2_T1F_ScyKB8 developmental time series (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030704 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 70525402 92523 22 29 416 503 SRX4645829 Unrestricted 0.0 Metatranscriptome 3300036158 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5NT15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036158 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 36100540 67924 621 1308 3471 4735 SRX8379437 Unrestricted 53.16 Metatranscriptome 3300059627 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 154R_AW_T3_R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059627 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 254250980 630880 501 297 1742 1719 Unrestricted 63.04 Metatranscriptome 3300026421 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 20R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026421 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 133064964 227354 92 14 124 267 SRX4783594 Unrestricted 29.25 Metatranscriptome 3300006398 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Cas_03_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006398 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 273186908 708989 502 384 1516 740 SRX2752006 Unrestricted 0.0 Metatranscriptome 3300016693 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES036 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016693 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 46.008 -89.701 109731935 222837 127 85 763 3855 SRX3780034 Unrestricted 0.0 Metatranscriptome 3300052375 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_157 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052375 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 15814495 41265 46 84 379 409 Unrestricted 541.69 Metatranscriptome 3300008583 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-34 University of Hawaii 3300008583 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 2087875 3739 3 1 159 31 0.0 Metatranscriptome 3300016707 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Indian Ocean in L1 medium with NH4Cl, 20 C, 32 psu salinity and 510 ?mol photons light - Timspurckia oligopyrenoides CCMP 3278 (MMETSP1172) National Center for Genome Resources 3300016707 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -31.81 144.9 14732374 14916 1 1 2 1 0.0 Metatranscriptome 3300008458 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34686 J. Craig Venter Institute (JCVI) 3300008458 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 17691 48 0 0 0 0 0.0 Metatranscriptome 3300018980 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_083 - TARA_N000001372 (ERX1782312-ERR1712127) Canada's Michael Smith Genome Sciences Centre 3300018980 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -54.3739 -65.1342 495007484 1157567 265 73 557 795 0.0 Metatranscriptome 3300046272 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_4_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046272 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 57906891 99390 2 0 16 2 Restricted 157.39 Metatranscriptome 3300017171 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Sargasso Sea in L1 medium, 20 C, 32 psu salinity and 757 ?mol photons light - Pyramimonas obovata CCMP 722 (MMETSP1169) National Center for Genome Resources 3300017171 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 33.1833 -65.25 27123819 34699 5 2 8 2 0.0 Metatranscriptome 3300021297 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.669 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021297 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.313 -123.997 44968496 108449 346 920 6467 3397 SRX4018519 Unrestricted 0.0 Metatranscriptome 3300010064 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_2_16_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010064 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 22696859 53484 194 465 23782 4272 Unrestricted 0.0 Metatranscriptome 3300017098 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium, 13 C, 21 psu salinity and 99 ?mol photons light - Pseudo-nitzschia pungens cf. pungens (MMETSP1061) National Center for Genome Resources 3300017098 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 47.6901 -122.40041 30766453 31845 42 12 63 23 0.0 Metatranscriptome 3300002766 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS1_TP2_12L 3300002766 Metatranscriptome Analysis released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 1076654 2755 11 3 24 3 0.0 Metatranscriptome 3300030803 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Mineral C3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030803 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ake.olson@slu.se; fmartin1954@me.com Ake Olson; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 305504754 846510 2969 676 4884 910 SRX3345112 Unrestricted 0.0 Metatranscriptome 3300052729 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MT_240817 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052729 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 31871014 69474 15 4 475 6 Unrestricted 0.0 Metatranscriptome 3300031137 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_D6_32mM_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031137 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 23993691 38199 0 0 0 4 SRX5783617 Unrestricted 21.73 Metatranscriptome 3300049511 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P24SSC2_191109_f (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300049511 Metatranscriptome Analysis megahit v. 2021-11-11 18:30:59 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 117445552 286666 208 292 1184 1548 Unrestricted 0.0 Metatranscriptome 3300050746 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T2_1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050746 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 53379390 87804 14 8 171 27 Unrestricted 263.18 Metatranscriptome 3300061840 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 22_controlsoil_2_T21 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061840 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 20772544 53896 44 38 372 314 Unrestricted 347.68 Metatranscriptome 3300003947 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS907_80_13H8 Marine Biological Laboratory 3300003947 Metatranscriptome Analysis CLC Genomics WB7 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933 -130.014 1107727 2799 25 0 40 0 0.0 Metatranscriptome 3300018781 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_123 - TARA_N000001992 (ERX1789655-ERR1719256) Canada's Michael Smith Genome Sciences Centre 3300018781 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -8.9068 -140.283 164252618 417613 25 16 71 221 0.0 Metatranscriptome 3300004612 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 53 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004612 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 134601408 394987 9750 3470 36857 7689 Unrestricted 0.0 Metatranscriptome 3300048957 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 39 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048957 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 42.4305 -81.2062 24799644 56242 131 14 327 148 Restricted 30.65 Metatranscriptome 3300008552 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.15.3OB.15dpc CCME-COLORADO 3300008552 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 929094 3922 20 1 337 8 0.0 Metatranscriptome 3300017320 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of freshwater ice eukaryotic communities from Messo in f/2 medium with sea water w/o silica, 3 C, 30 psu salinity and 346 ?mol photons light - Scrippsiella hangoei SHHI-4 (MMETSP0369) National Center for Genome Resources 3300017320 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Ice Freshwater Unclassified freshwater ice 68.46306 78.22333 74284615 103328 0 2 0 3 0.0 Metatranscriptome 3300046431 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_28_Fire (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046431 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.166 -81.3634 197468283 440374 7 90 995 415 Unrestricted 28.3 Metatranscriptome 3300030529 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO740-VDE013SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030529 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2641 -71.2157 454134187 1002367 93 133 3167 1460 SRX4011344 Unrestricted 0.0 Metatranscriptome 3300008287 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34719 J. Craig Venter Institute (JCVI) 3300008287 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 23882 39 0 0 4 0 0.0 Metatranscriptome 3300031014 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 5B (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031014 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 184319023 498268 2965 1632 7092 5169 SRX2752864 Unrestricted 0.0 Metatranscriptome 3300035351 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0819U12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035351 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.039 92647988 200927 167 560 4046 1573 SRX8237459 Unrestricted 29.52 Metatranscriptome 3300018626 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_066 - TARA_N000000790 (ERX1789512-ERR1719180) Canada's Michael Smith Genome Sciences Centre 3300018626 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -34.9363 17.9366 85444195 186224 1 7 1 58 0.0 Metatranscriptome 3300012717 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES135 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012717 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 153859149 312086 79 149 680 3156 SRX3011166 Unrestricted 0.0 Metatranscriptome 3300008569 *Microbiome Permanent Draft Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France - CSM2012-MB-F-N Centre National de la Recherche Scientifique (CNRS) 3300008569 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Microbial mats Freshwater lake 12098537 39655 401 258 3605 1711 SRX528802 0.0 Metatranscriptome 3300031093 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031093 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040586 -106.94868265 831982426 1963186 530 387 1710 1916 SRX8134585 Unrestricted 18.6 Metatranscriptome 3300010987 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-7 (Eukaryote Community Metatranscriptome) (version 6) (version 3) DOE Joint Genome Institute (JGI) 3300010987 Metatranscriptome Analysis rnaSPAdes v. 0.1.1 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 18.7998 -20.70285 1175443952 2451978 435 518 712 1564 SRX5724273 Unrestricted 0.0 Metatranscriptome 3300016982 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine sediment eukaryotic communities from Atlantic Ocean in seawater with wheat grains, 20 C, 35 psu salinity and 744 ?mol photons light - Vannella sp. DIVA3 517/6/12 (MMETSP0168) National Center for Genome Resources 3300016982 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Sediment marine sediment -35.98917 -49.01944 25182882 24698 32 6 52 8 0.0 Metatranscriptome 3300048703 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Metatranscriptome of beaver colon microbial communities from Maple Ridge, British Columbia, Canada - B2_PC2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048703 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Unclassified colon 49.2552 -122.5085 146821725 288968 1 7 144 25 Restricted 46.31 Metatranscriptome 3300019057 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of freshwater lake microbial communities from Lake Tornetrask, Sweden - GS667_0p1 J. Craig Venter Institute (JCVI) 3300019057 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 68.355835 18.821667 842147 4113 2 2 52 111 0.0 Metatranscriptome 3300031491 *Microbiome Permanent Draft Soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031491 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thb15@psu.edu Terrence Bell No Engineered Artificial ecosystem Surface biofilm Soil microcosm Unclassified soil 40.7997 -77.8629 13333482 25866 104 66 675 588 SRX5812404 Unrestricted 81.25 Metatranscriptome 3300030875 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLU4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030875 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 59.9992 10.7901 8033249 14800 149 284 650 1474 SRX5351304 Unrestricted 0.0 Metatranscriptome 3300013309 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES035 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013309 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 51065508 108887 154 96 1092 2611 SRX3010464 Unrestricted 0.0 Metatranscriptome 3300019168 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLI2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019168 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified Plant litter 49.044 13.617 6823989 12756 28 332 572 2004 SRX5217065, SRX3936996 Unrestricted 0.0 Metatranscriptome 3300028726 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Ile2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028726 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 49096156 93445 8 9 260 40 SRX5356194 Unrestricted 99.01 Metatranscriptome 3300030964 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T33 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030964 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 62260258 114342 36 37 53 221 SRX5794805 Unrestricted 21.55 Metatranscriptome 3300028096 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Atlam_RepA_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028096 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 128613917 257656 57 153 310 839 SRX5245776 Unrestricted 24.66 Metatranscriptome 3300002377 *Microbiome Permanent Draft Biogas fermentation microbial communities from biogas plants in Germany Biogas fermentation microbial communities from Germany - Plant 2 RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002377 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes asczyrba@techfak.uni-bielefeld.de Alexander Sczyrba No Engineered Bioreactor Digestate Anaerobic Unclassified Biogas fermentantion 52.0385 8.4956 310774216 596584 10 13 374 31 SRX2501757 Unrestricted 0.0 Metatranscriptome 3300004324 *Microbiome Permanent Draft Metatranscriptomics studies in sediment microbial communities from the mangroves in Sao Paulo, Brazil Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC1C 3300004324 Metatranscriptome Analysis IDBA released by JGI data releasing policy No Yes luc.g.cabral@gmail.com Luc?lia Cabral, Lucelia Cabral No Environmental Aquatic Intertidal zone Marine Mangrove sediment Mangrove sediment -23.8553 -46.1394 25269975 75150 3977 792 16612 2316 0.0 Metatranscriptome 3300046033 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046033 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4161 -64.8992 42140667 101479 423 34 757 457 Unrestricted 20.33 Metatranscriptome 3300008924 *Microbiome Permanent Draft Microbial communities from freshwater in the western basin of Lake Erie, USA Microbial communities from freshwater in the western basin of Lake Erie, USA - 882-3 University of Tennessee 3300008924 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.76 -83.31 5921722 16020 63 76 359 961 0.0 Metatranscriptome 3300047425 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81957b4a-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047425 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 222826537 562434 312 230 1482 1310 Unrestricted 40.54 Metatranscriptome 3300032161 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB4_Tmax_934 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032161 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 75.0007 -150.0027 106194654 222036 58 36 556 916 SRX6422123 Unrestricted 19.21 Metatranscriptome 3300022529 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022529 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 273992874 665318 154 444 3165 3254 SRX4407732 Unrestricted 0.0 Metatranscriptome 3300018572 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS678_0p1 J. Craig Venter Institute (JCVI) 3300018572 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 58.581234 18.232801 24880939 67400 32 38 1670 525 0.0 Metatranscriptome 3300016953 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in NEPC medium, at 20 C, 30 psu salinity and 584 ?mol photons light - Amphiprora sp. CCMP467 (MMETSP0724) National Center for Genome Resources 3300016953 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 32515434 32529 11 3 9 7 0.0 Metatranscriptome 3300017279 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in K/2 medium, 17 C, 35 psu salinity and 333 ?mol photons light - Calcidiscus leptoporus RCC 1130 (MMETSP1334) National Center for Genome Resources 3300017279 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -34.46666667 17.3 35468902 48960 33 1 48 1 0.0 Metatranscriptome 3300049080 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_3 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300049080 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 86211254 201287 169 35 390 187 Unrestricted 19.52 Metatranscriptome 3300016878 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in modified f/2 medium with seawater, 3 C, 33.6 psu salinity and 349 ?mol photons light - Chaetoceros debilis MM31A-1 (MMETSP0150) National Center for Genome Resources 3300016878 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -49.6 2.1 29890470 27979 2 4 4 1 0.0 Metatranscriptome 3300009532 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, Depth 3m; RNA IDBA-UD Marine Biological Laboratory 3300009532 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 45546463 115677 696 678 1785 1947 0.0 Metatranscriptome 3300021854 *Microbiome Permanent Draft Extremophilic microbial mat communities from USA and Mexico Metatranscriptome of extremophilic microbial mat communities from Yellowstone National Park, Wyoming, USA - OCTB_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021854 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jim.fredrickson@pnnl.gov; binskeep@montana.edu Jim Fredrickson; William P. Inskeep No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hot spring microbial mat 44.534 -110.7978 79760936 250108 42 4 34391 222 SRX3940509 Unrestricted 0.0 Metatranscriptome 3300046197 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_6_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046197 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 89648155 153531 2 0 16 1 Restricted 78.8 Metatranscriptome 3300008812 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of boa constrictors from Steinhart Aquarium in San Francisco, USA - CAS06_Kidney University of California, San Francisco 3300008812 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Kidney Urinary system Unclassified Kidney 271151 910 0 0 1 0 SRX170627 0.0 Metatranscriptome 3300018828 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_137 - TARA_N000002925 (ERX1789466-ERR1719252) Canada's Michael Smith Genome Sciences Centre 3300018828 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine 14.2035 -116.6261 185739029 463597 6 13 24 79 0.0 Metatranscriptome 3300008584 *Microbiome Permanent Draft Microbial communities of corn and soybean rhizosphere soil from Ohio, USA Microbial communities of corn rhizosphere soil from Ohio, USA - Corn_Control_2a Auburn University 3300008584 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Plants Rhizosphere Roots Soil Rhisosphere soil 7048057 23552 624 228 12384 2106 SRX1078302 0.0 Metatranscriptome 3300017018 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Baffin Bay in L1 medium with seawater, 2 C, 33 psu salinity and 481 ?mol photons light - Attheya septentrionalis CCMP 2084 (MMETSP1449) National Center for Genome Resources 3300017018 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 77.8136 -76.3697 27861212 28150 3 7 1 14 0.0 Metatranscriptome 3300028647 *Microbiome Permanent Draft Studying microbial cell-cell associations in a wide range of aquatic ecosystems Metatranscriptome of activated sludge microbial communities from WWTP in Nijmegen, Gelderland, Netherland - WWTP Weurt (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028647 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes twoyke@lbl.gov Tanja Woyke No Engineered WWTP Activated sludge Aerobic digester Unclassified activated sludge 51.82 5.87 687605078 1289247 68 152 424 754 SRX7101833 Unrestricted 25.96 Metatranscriptome 3300030697 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 11_T1F_StrKB8 developmental time series (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030697 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 47847093 64215 17 31 229 435 SRX4645941 Unrestricted 0.0 Metatranscriptome 3300021217 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from nest from French Guiana - 13-5 mRNA SA University of Luxembourg 3300021217 Metatranscriptome Analysis CLC Genomics Workbench Version 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 5.06224 -53.047407 25057836 88075 0 0 0 0 0.0 Metatranscriptome 3300031035 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Humus N1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031035 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ake.olson@slu.se; francis.martin@inrae.fr Ake Olson; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 501785706 1284310 1553 420 3463 1226 SRX3345031 Unrestricted 0.0 Metatranscriptome 3300017050 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in 0.2u filtered seawater with ES enrichments, NO3, 15 C, 33 psu salinity and 356 ?mol photons light - Pseudo-nitzschia australis 10249 10 AB (MMETSP0139_2) National Center for Genome Resources 3300017050 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 36.60369 -121.88927 29616161 29767 2 1 2 1 0.0 Metatranscriptome 3300031202 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_D6_8mM_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031202 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 22415355 33969 2 0 1 2 SRX5783607 Unrestricted 23.46 Metatranscriptome 3300003285 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA Grassland soil microbial communities from Hopland, California, USA - Sample H3_Rhizo_39 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003285 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes pettridge2@llnl.gov, nuccio1@llnl.gov; pettridge2@llnl.gov Jennifer Pett-Ridge, Erin Nuccio; Jennifer Pett-Ridge No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.972988 -123.116539 3573548 4880 0 0 0 8 SRX2563617 Unrestricted 0.0 Metatranscriptome 3300010063 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_2_4_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010063 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 19582543 48199 146 409 20727 3520 Unrestricted 0.0 Metatranscriptome 3300003672 *Microbiome Permanent Draft Estuarine microbial mat communities from Elkhorn Slough, Moss Landing, CA, that are H2-evolving and photosynthetic Estuarine microbial mat communities from Elkhorn Slough, Moss Landing, CA, USA - CR2A Metatranscriptome (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003672 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes jackson.z.lee@nasa.gov, SWSinger@lbl.gov; jackson.z.lee@nasa.gov Jackson Lee, Steven W. Singer; Jackson Lee Yes 23190731 Environmental Aquatic Intertidal zone Marine Estuary Estuarine 33.8 -121.8 4726411 13417 32 140 326 1006 Unrestricted 0.0 Metatranscriptome 3300030804 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PO 4B (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030804 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 387809332 1094338 2450 710 4995 2761 SRX2753456 Unrestricted 0.0 Metatranscriptome 3300035021 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_118 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035021 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92039953 -106.94828697 796146153 1871106 584 186 1595 1308 SRX7715174 Unrestricted 14.75 Metatranscriptome 3300010245 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1900 MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010245 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 45242694 92037 2443 51 16284 257 SRX2740049, SRX2740050 Unrestricted 0.0 Metatranscriptome 3300061802 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 23_rapeseed_2_T21 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061802 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 22608506 56319 31 28 323 304 Unrestricted 319.77 Metatranscriptome 3300017372 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Gulf of Mexico in L1 medium, 22 C, 32 psu salinity and 701 ?mol photons light - Karenia brevis CCMP 2229 (MMETSP0030) National Center for Genome Resources 3300017372 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 27.0171 -82.4763 102683178 139788 6 4 9 2 0.0 Metatranscriptome 3300007156 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_top_diel_T=5 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007156 Metatranscriptome Analysis megahit v. 0.2.0 No Yes binskeep@montana.edu, binskeep@montana.edu; jim.fredrickson@pnnl.gov William Inskeep, William P. Inskeep; Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Microbial mats 44.7315 -110.7113 13616744 37715 3211 11 6244 40 SRX2522153 Unrestricted 0.0 Metatranscriptome 3300031496 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB21_1105_33.1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031496 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 74.0136 -139.5971 108817992 215197 63 31 309 1029 SRX5651224 Unrestricted 0.0 Metatranscriptome 3300022185 *Microbiome Permanent Draft Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022185 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes christopher.s.miller@ucdenver.edu Christopher S. Miller No Environmental Aquatic Wetlands Freshwater Unclassified Freshwater wetlands 41.384 -82.513 292092163 707332 697 442 52684 5035 Unrestricted 0.0 Metatranscriptome 3300031013 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 4A (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031013 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 166721833 455062 3102 625 6905 3940 SRX2752820 Unrestricted 0.0 Metatranscriptome 3300011307 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S21 DCM_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011307 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 70080905 154211 63 53 1516 1446 SRX2524533 Unrestricted 0.0 Metatranscriptome 3300046220 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_5_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046220 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 118300846 190413 1 0 25 1 Restricted 103.03 Metatranscriptome 3300010089 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_8_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010089 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 48623601 117932 161 479 29728 4820 Unrestricted 0.0 Metatranscriptome 3300031094 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031094 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92044255 -106.94881797 342802371 815986 620 620 3427 3284 SRX8134587 Unrestricted 20.95 Metatranscriptome 3300036456 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp03_R72 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036456 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 168474373 374981 209 96 514 1252 SRX8840818 Unrestricted 34.38 Metatranscriptome 3300027005 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0495-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300027005 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 155851248 256121 104 111 20 85 SRX5252257 Unrestricted 84.12 Metatranscriptome 3300046436 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_40_Control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046436 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1525 -81.3652 42706204 98110 182 182 1143 997 Unrestricted 50.45 Metatranscriptome 3300048704 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Metatranscriptome of beaver colon microbial communities from Maple Ridge, British Columbia, Canada - B2_PC3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048704 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Unclassified colon 49.2552 -122.5085 159905509 313182 4 12 152 39 Restricted 44.23 Metatranscriptome 3300016676 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011513AT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016676 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 19249576 49632 11 14 272 1476 SRX3780731 Unrestricted 0.0 Metatranscriptome 3300043808 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043808 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 81791263 191075 121 432 2066 2093 Unrestricted 54.93 Metatranscriptome 3300018786 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_070 - TARA_N000000682 (ERX1789372-ERR1719517) Canada's Michael Smith Genome Sciences Centre 3300018786 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -20.4107 -3.1775 145633445 398827 4 17 21 212 0.0 Metatranscriptome 3300031411 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PO 1A (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031411 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 1083285994 2773584 3967 906 8108 3387 SRX2752869 Unrestricted 0.0 Metatranscriptome 3300003526 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS2_TP1_12L 3300003526 Metatranscriptome Analysis CLC genomics workbench 7.0 released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.933251 -130.01379 1890616 4811 40 0 67 1 0.0 Metatranscriptome 3300023437 *Microbiome Permanent Draft Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Soil microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B2.stcc.R1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300023437 Metatranscriptome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes colemanderr@gmail.com Devin Coleman-Derr No Environmental Terrestrial Unclassified Soil Agricultural land field soil 36.339058 -120.12031 4902965 8710 168 848 1533 2225 0.0 Metatranscriptome 3300030963 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030963 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 59.9989 10.7903 34276214 77431 139 198 681 1089 SRX5351817 Unrestricted 0.0 Metatranscriptome 3300047617 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_3_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047617 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 18787622 38470 2 3 10 3 Restricted 280.16 Metatranscriptome 3300046034 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-27 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046034 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4056 -64.9059 50615172 120479 634 42 977 545 Unrestricted 19.08 Metatranscriptome 3300036345 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Metatranscriptome of Methylocaldum sp. 0917 culture communities from SDSU, California, USA - Exp#1 BR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036345 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Engineered Lab culture Bacteria Culture media Unclassified defined medium 32.7717 -117.0735 8854504 13048 0 0 1 0 SRX8291429 Unrestricted 3750.23 Metatranscriptome 3300021882 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-8 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021882 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 15.249 -20.5141 31659211 97502 134 153 348 561 SRX6381188 Unrestricted 0.0 Metatranscriptome 3300018520 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_136 - TARA_N000002961 (ERX1789461-ERR1719241) Canada's Michael Smith Genome Sciences Centre 3300018520 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 17.0854 -118.8913 12363256 33294 0 4 5 37 0.0 Metatranscriptome 3300037192 *Microbiome Permanent Draft FORHOT Natural soil warming experiment in Iceland Soil microbial communities from grassland in Hveragerdi, Iceland - GO4-A University of Vienna 3300037192 Metatranscriptome Analysis rnaSPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes craig.herbold@microbial-ecology.net Craig Herbold No Environmental Terrestrial Unclassified Soil Grasslands Soil 64.025 -21.205 2161025808 8712305 221262 25576 611432 45626 0.0 Metatranscriptome 3300018621 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_098 - TARA_N000001561 (ERX1782270-ERR1712225) Canada's Michael Smith Genome Sciences Centre 3300018621 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -25.826 -111.7294 81023793 168995 97 30 408 487 0.0 Metatranscriptome 3300019155 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLI1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019155 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified Plant litter 49.043 13.6183 8138588 15349 25 320 424 2082 SRX5217016, SRX3936997 Unrestricted 0.0 Metatranscriptome 3300008923 *Microbiome Permanent Draft Microbial communities from mice foregut in Vienna, Austria Microbial communities from mice foregut in Vienna, Austria - lumen_for_1 University of Vienna 3300008923 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Stomach Digestive system Forestomach Foregut of mice 30869873 120367 323 2 2323 27 SRX326448 0.0 Metatranscriptome 3300035356 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_0800_MSt8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035356 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 149277188 374279 0 0 50 1 SRX8252312 Unrestricted 248.62 Metatranscriptome 3300040756 *Microbiome Finished Lab enriched marine microbial communities from the Bohai Gulf, China Lab enriched marine microbial communities from the Bohai Gulf, China - AOH Hebei Normal University of Science &Technology 3300040756 Metatranscriptome Analysis Trinity v. 2.4.0 released by Si Li No Yes jackeikee@aliyun.com Si Li No Environmental Aquatic Gulf Marine Unclassified Marine 38.26 118.24 107218271 228421 89 196 277 530 0.0 Metatranscriptome 3300017176 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in Southern Ocean seawater, 4 C, 35 psu salinity and 130 ?mol photons light - Fragilariopsis kerguelensis L2-C3 (MMETSP0908) National Center for Genome Resources 3300017176 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -48.1 -24.25 36351166 49492 1 1 1 1 0.0 Metatranscriptome 3300059648 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 65R_SW_T2_R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059648 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 96741455 248346 304 225 1163 1392 Unrestricted 76.61 Metatranscriptome 3300016954 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in L1 medium with seawater, 14 C, 33 psu salinity and 543 ?mol photons light - Pavlova gyrans CCMP 608 (MMETSP1466) National Center for Genome Resources 3300016954 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 19446577 23578 3 10 1 6 0.0 Metatranscriptome 3300006598 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_H2B_01_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006598 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 181307280 488951 570 807 2983 2437 SRX2752330 Unrestricted 0.0 Metatranscriptome 3300008892 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of boa constrictors from Steinhart Aquarium in San Francisco, USA - CAS07_Brain University of California, San Francisco 3300008892 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Brain Nervous system Unclassified Brain 9677620 26080 0 0 0 1 SRX170635 0.0 Metatranscriptome 3300032719 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow Y-3 corn stover (Eukaryote Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032719 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 40.102108 -88.227299 114599683 190399 10 65 38 105 SRX5780884 Unrestricted 0.0 Metatranscriptome 3300030989 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_197 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030989 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92040586 -106.94868265 130403771 304623 560 605 3293 3118 SRX8134584 Unrestricted 20.05 Metatranscriptome 3300032541 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of cow rumen rumen associated fungal communities from Illinois, USA - Cow X-3 switchgrass (Eukaryote Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032541 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Cow rumen associated 40.102108 -88.227299 53939285 115274 49 32 170 103 SRX3338962 Unrestricted 0.0 Metatranscriptome 3300055178 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP11.2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055178 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 183562031 358634 23 30 137 174 Unrestricted 51.82 Metatranscriptome 3300018747 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_022 - TARA_A100000696 (ERX1782435-ERR1712076) Canada's Michael Smith Genome Sciences Centre 3300018747 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.5705 17.4101 159689480 346944 101 36 406 758 0.0 Metatranscriptome 3300021853 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States - S.189 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021853 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.187 -123.687 56823073 122120 318 1661 10013 9922 SRX4015935 Unrestricted 0.0 Metatranscriptome 3300015243 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES148 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300015243 Metatranscriptome Analysis megahit v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion, Epilimnion/Euphotic zone freshwater 43.099 -89.405 32784598 69246 118 92 1810 1920 SRX3780028 Unrestricted 0.0 Metatranscriptome 3300031076 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031076 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 42239010 83832 69 57 76 309 SRX5794228 Unrestricted 28.54 Metatranscriptome 3300035349 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0819S20 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035349 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0388 25875182 51191 157 179 3749 646 SRX8237431 Unrestricted 123.37 Metatranscriptome 3300034649 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_1400_MSt11 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034649 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 148785728 369817 0 0 53 2 SRX8254464 Unrestricted 261.75 Metatranscriptome 3300030957 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E7_T_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030957 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 530741123 1673580 518 498 962 1182 SRX3341781 Unrestricted 0.0 Metatranscriptome 3300007241 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 7/17/14 B RNA (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007241 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ebyoung@uwm.edu Erica Young, Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 233608884 606521 1683 1579 4473 6274 SRX5628648 Unrestricted 0.0 Metatranscriptome 3300026426 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 23R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026426 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 152326622 253475 86 18 134 222 SRX4783585 Unrestricted 31.37 Metatranscriptome 3300029602 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Trp1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029602 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 73215721 130615 13 2 186 12 SRX5356207 Unrestricted 50.36 Metatranscriptome 3300018688 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_135 - TARA_N000002199 (ERX1789672-ERR1719470) Canada's Michael Smith Genome Sciences Centre 3300018688 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 32.9916 -121.8536 135621544 255191 0 4 1 36 0.0 Metatranscriptome 3300005418 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom. Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel3S_1000h metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005418 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sgtringe@lbl.gov, rmmckay@bgsu.edu Susannah Tringe, Robert M. McKay No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.69957 -83.2941 257149262 679193 1296 6035 3674 13026 SRX3556441 Unrestricted 0.0 Metatranscriptome 3300048529 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81958d1a-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048529 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 96397277 246252 229 201 1407 1153 Unrestricted 22.29 Metatranscriptome 3300016778 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in f/2 medium with artificial seawater, no silicate, 21 C, 35 psu salinity and 457 ?mol photons light - micromonas sp. NEPCC29 (MMETSP1386) National Center for Genome Resources 3300016778 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 49.25 -123.1 20615694 16189 5 3 2 3 0.0 Metatranscriptome 3300019064 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS679_0p1 J. Craig Venter Institute (JCVI) 3300019064 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 56.1664 16.378218 2389888 12224 4 11 142 187 0.0 Metatranscriptome 3300027016 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0438-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300027016 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 157145247 265436 12 6 17 63 SRX5251583 Unrestricted 102.58 Metatranscriptome 3300042413 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_184 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042413 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 176331904 407014 159 326 2462 1717 Unrestricted 46.36 Metatranscriptome 3300021867 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S3 C1 B8 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021867 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 32.819902 -14.589815 15936338 34126 87 40 164 131 SRX5204101 Unrestricted 0.0 Metatranscriptome 3300004969 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 44 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004969 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 92589886 296022 4529 2118 16905 4774 Unrestricted 0.0 Metatranscriptome 3300028232 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepC_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028232 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 6325280 14044 19 18 67 122 SRX5245737 Unrestricted 17.4 Metatranscriptome 3300030831 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_141 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030831 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92028116 -106.94891893 32066519 73453 436 457 3516 2459 SRX8133092 Unrestricted 32.85 Metatranscriptome 3300024572 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepB_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024572 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 290679300 616931 57 114 712 1685 SRX4547692 Unrestricted 18.72 Metatranscriptome 3300030775 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 9 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030775 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ake.olson@slu.se; francis.martin@inrae.fr Ake Olson; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 374487579 893896 579 301 1244 653 SRX3345011 Unrestricted 0.0 Metatranscriptome 3300035618 *Microbiome Permanent Draft Sediment microbial communities from Lake Washington near Medina, WA, United States Metatranscriptome of methane-enriched sediment microbial communities from Lake Washington, WA, United States - HO-FA-1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035618 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment sediment 47.6215 -122.2558 67504050 96492 7 75 13 74 SRX8379914 Unrestricted 257.99 Metatranscriptome 3300008369 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34690 J. Craig Venter Institute (JCVI) 3300008369 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 12075 35 0 0 0 0 0.0 Metatranscriptome 3300042494 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_CL14+71_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042494 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 59810788 82765 0 0 0 0 Unrestricted 217.7 Metatranscriptome 3300042580 *Microbiome Permanent Draft Freshwater microbial communities from rivers from various locations all over the world Metatranscriptome of feshwater microbial communities from Michigan, USA - augustacreek_2019_sw_WHONDRS-S19S_0067 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042580 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic River Freshwater Unclassified Freshwater 42.3919 -85.354 78375302 181341 450 934 2728 4379 Unrestricted 43.13 Metatranscriptome 3300013076 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES042 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013076 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 100559549 213183 97 63 752 2781 SRX3010522 Unrestricted 0.0 Metatranscriptome 3300011092 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS903_55_13H reanalysis 3300011092 Metatranscriptome Analysis CLC genomics wb9 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 2394218 5868 66 2 172 3 0.0 Metatranscriptome 3300021314 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.671 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021314 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.27 -123.946 97391025 199141 275 1387 3883 7932 SRX4018591 Unrestricted 0.0 Metatranscriptome 3300006233 *Microbiome Permanent Draft Marine sediment microbial communities from different distances from oil contamination, Gulf of Mexico Marine sediment microbial communities, 0.3 km from oil contamination, elevated hydrocarbon, Gulf of Mexico - BC331 Yale Center for Genome Analysis 3300006233 Metatranscriptome Analysis idba_tran released per JGI data release policy No Yes phu@lbl.gov Ping Hu No Environmental Aquatic Oceanic Marine Oil-contaminated sediment marine 28.3 -88.2 33148937 76881 1023 797 9176 2596 0.0 Metatranscriptome 3300037039 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - ParticleExp03_R78 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037039 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 307716166 618093 445 106 969 1533 SRX8841476 Unrestricted 31.11 Metatranscriptome 3300008352 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy - t30.CR.RNAseq.exp1 University of Naples 3300008352 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Cheese 13871 49 5 0 39 0 0.0 Metatranscriptome 3300019030 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_070 - TARA_N000000666 (ERX1789399-ERR1719153) Canada's Michael Smith Genome Sciences Centre 3300019030 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -20.4035 -3.1859 510035671 1299202 1 28 7 118 0.0 Metatranscriptome 3300041525 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Bulk soil microbial community from Lincoln, Canterbury, New Zealand - BS18_8 MetaT AgResearch, New Zealand, Mosgeil 3300041525 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Environmental Terrestrial Unclassified Soil Agricultural land Dairy farm pasture soil -43.648506 172.343549 18259723 34846 246 183 1325 465 0.0 Metatranscriptome 3300004524 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 88_LOW11 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004524 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 17366630 41722 81 403 783 889 SRX2780164 Unrestricted 0.0 Metatranscriptome 3300038277 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_M1_C1_D6_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038277 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 80016836 163280 535 1564 6854 4613 SRX9390236 Unrestricted 177.93 Metatranscriptome 3300037665 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_M1_C2_D1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037665 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 62241026 120165 454 2113 4504 6002 SRX9383757 Unrestricted 161.95 Metatranscriptome 3300018881 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_070 - TARA_N000000678 (ERX1782151-ERR1712094) Canada's Michael Smith Genome Sciences Centre 3300018881 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -20.4091 -3.1759 200246430 591373 53 24 325 705 0.0 Metatranscriptome 3300012364 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_0_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012364 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 68983952 155647 182 956 14016 8167 Unrestricted 0.0 Metatranscriptome 3300012738 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES023 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012738 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 29949970 64938 167 44 3349 1670 SRX3527148 Unrestricted 0.0 Metatranscriptome 3300010057 *Microbiome Permanent Draft Continental margin sediment microbial communities from various locations Metatranscriptome of continental margin sediment microbial communities from North Pacific Ocean - WA_23_40 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010057 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michaelgraw@gmail.com; rcolwell@coas.oregonstate.edu Michael Graw; Frederick Colwell No Environmental Aquatic Continental margin Marine Sediment Continental margin sediment 47.5233 -125.0078 472563 1227 2 1 517 32 SRX2525670 Unrestricted 0.0 Metatranscriptome 3300017113 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Great South Bay, New York in GSe medium with ammonium, 22 C, 32 psu salinity and 177 ?mol photons light - Aureococcus anophagefferens CCMP 1850 (MMETSP0915) National Center for Genome Resources 3300017113 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Estuary marine 40.6508 -73.1524 21243868 32417 2 5 1 2 0.0 Metatranscriptome 3300013509 *Microbiome Permanent Draft Roseovarius nubinhibens ISM and Alexandrium tamarense modeled microbial communities from the University of Georgia, USA Metatranscriptome of Roseovarius nubinhibens ISM and Alexandrium tamarense co-culture from University of Georgia, USA - T8_LowC_A metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013509 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes mmoran@uga.edu Mary Ann Moran No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Laboratory simulated co-culture 33.933 -83.366 6661723 12208 0 0 557 29 SRX3020961 Unrestricted 0.0 Metatranscriptome 3300006710 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Blanes Bay, Balearic Sea - MPBL120807 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006710 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 41.67 2.8 90291086 280046 981 1092 2339 4165 SRX3299181 Unrestricted 0.0 Metatranscriptome 3300037690 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Metatranscriptome of lab enriched marine microbial communities from Marineland, Florida, USA - SWP_R3_TP0 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037690 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6475 -82.3464 232892634 468758 327 71 1089 408 SRX9142269 Unrestricted 53.05 Metatranscriptome 3300002655 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF125 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002655 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 6553649 16468 213 747 1322 3546 SRX2014413 Unrestricted 0.0 Metatranscriptome 3300017194 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no Na2SiO3, 25 C, 34 psu salinity and 239 ?mol photons light - Symbiodinium sp. Mp (MMETSP1124) National Center for Genome Resources 3300017194 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 31325594 52951 27 17 32 35 0.0 Metatranscriptome 3300029283 *Microbiome Permanent Draft Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Sorghum rhizosphere microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B2.ctno.R1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300029283 Metatranscriptome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes colemanderr@gmail.com Devin Coleman-Derr No Host-associated Plants Rhizosphere Roots Unclassified sorghum rhizosphere 36.3390586 -120.12031 26232484 53481 240 908 2087 2372 0.0 Metatranscriptome 3300019224 *Microbiome Permanent Draft Anaerobic biogas reactor microbial communites from Washington, USA Anaerobic biogas reactor microbial communites from Seattle, Washington, USA - Biogas_R1-B RNA time zero (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019224 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dacb@uw.edu David Beck No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic biogas reactor 47.6525 -122.3049 184026225 370980 36 237 29160 3514 Unrestricted 0.0 Metatranscriptome 3300052331 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_4B2_100218_0717 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052331 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@dbi.udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 117105172 281993 511 120 1222 676 Unrestricted 140.18 Metatranscriptome 3300032455 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day5_7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032455 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 42755720 71695 14 1 46 7 SRX6857175 Unrestricted 138.91 Metatranscriptome 3300029269 *Microbiome Permanent Draft Black Band Disease transitions Coral surface microbial communities from stony corals with Black-band disease (BBD), Florida Keys National Marine Sanctuary, USA - LKH1 University of Florida 3300029269 Metatranscriptome Analysis IDBA-UD v. 1.1.1 released by JGI data releasing policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Coral Cnidaria Surface coral surface 24.5484806 -81.4059137 676883781 1407630 5 54 16 100 0.0 Metatranscriptome 3300016807 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine algae-associated eukaryotic communities from Pacific Ocean in B1 amended seawater, 5 g/L glucose, 25 C, 33.5 psu salinity and 597 ?mol photons light - Thraustochytrium sp. LLF1b (MMETSP0198_2) National Center for Genome Resources 3300016807 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Algae Unclassified Unclassified Unclassified marine algae-associated 32.86667 -117.25 21455555 21565 0 5 2 5 0.0 Metatranscriptome 3300036165 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8WT15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036165 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 119821328 236857 451 1999 1508 6249 SRX8379869 Unrestricted 48.76 Metatranscriptome 3300017135 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in Sterile coastal seawater, 18 C, 34 psu salinity and 657 ?mol photons light - Oxyrrhis marina LB1974 (MMETSP1424) National Center for Genome Resources 3300017135 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 25555802 33632 8 7 17 2 0.0 Metatranscriptome 3300048964 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 45+50 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048964 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.7703 -82.3517 28738682 66798 109 26 214 168 Restricted 20.81 Metatranscriptome 3300030703 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 27_T1F_3212KB8 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030703 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 72595105 95890 0 14 44 456 SRX4646392 Unrestricted 0.0 Metatranscriptome 3300055232 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP9.1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055232 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 108021306 217738 8 18 55 82 Unrestricted 35.23 Metatranscriptome 3300002866 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Avena fatua rhizosphere microbial communities - H3_Rhizo_Litter_15 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002866 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes mkfstone@berkeley.edu, nuccio1@llnl.gov; mkfstone@berkeley.edu Mary Firestone, Erin Nuccio; Mary Firestone No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.97364 -123.117453 7416223 20701 120 160 741 1163 SRX2558071 Unrestricted 0.0 Metatranscriptome 3300030638 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 15_T2E_3DEL1 developmental time series (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030638 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 57377822 74787 15 23 421 494 SRX4645958 Unrestricted 0.0 Metatranscriptome 3300016694 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES040 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016694 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 46.008 -89.701 108257307 222523 130 70 731 3721 SRX3780237 Unrestricted 0.0 Metatranscriptome 3300036400 *Microbiome Permanent Draft Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S01 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036400 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes colin.averill@usys.ethz.ch Colin Averill No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 36.0 -78.0 60427818 117758 7 87 271 339 SRX7613801 Unrestricted 352.67 Metatranscriptome 3300031641 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_D6_4mM_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031641 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 25776130 37195 1 1 4 1 SRX6408062 Unrestricted 67.95 Metatranscriptome 3300031540 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB9_544_20m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031540 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 77.9995 -150.0065 53361008 110440 101 24 143 699 SRX5653067 Unrestricted 0.0 Metatranscriptome 3300002658 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF127 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002658 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jeffb@bio.umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.471116 -72.17263 6405088 17096 200 598 469 2736 SRX2014414 Unrestricted 0.0 Metatranscriptome 3300030807 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030807 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7416 -117.7042 31865229 62565 65 38 136 203 SRX5793999 Unrestricted 19.59 Metatranscriptome 3300059512 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 57R_AW_T2_R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059512 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 309290169 759639 660 389 2247 2124 Unrestricted 70.41 Metatranscriptome 3300035566 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Metatranscriptome of soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_Dec_plot1_rep1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035566 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6539 -80.6288 291309227 667992 532 243 2464 1862 SRX8186499 Unrestricted 44.01 Metatranscriptome 3300041528 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_129 MetaT AgResearch, New Zealand, Mosgeil 3300041528 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 32360481 74519 432 180 2077 198 0.0 Metatranscriptome 3300022370 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.182 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022370 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.302 -123.036 57539366 122176 176 1300 1557 4105 SRX4015868 Unrestricted 0.0 Metatranscriptome 3300021293 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.589 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021293 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.286 -124.052 39942751 94749 582 1536 12045 5995 SRX4018009 Unrestricted 0.0 Metatranscriptome 3300012871 *Microbiome Permanent Draft Synthetic bacterial communities of pure cultures isolated from sediment of Lake Washington, USA Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under high oxygen condition - MT methane_oxidizing 14strains_48hour-a (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012871 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes milachis@u.washington.edu Ludmila Chistoserdova No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 47.6553 -122.3035 17306078 36216 1 0 937 1 SRX3015714 Unrestricted 0.0 Metatranscriptome 3300051589 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 24_50_10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051589 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 116710461 310045 262 235 1979 1444 Unrestricted 80.22 Metatranscriptome 3300001806 *Microbiome Permanent Draft Microbial community impact on carbon sequestration in managed wetland Carbon farming Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk Metatranscriptome (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300001806 Metatranscriptome Analysis No Yes sgtringe@lbl.gov Susannah Tringe No Environmental Aquatic Wetlands Freshwater Sediment Wetland 38.107 -121.6475 44668563 144516 122 457 11503 4588 SRX2553232 Unrestricted 0.0 Metatranscriptome 3300016703 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041407CT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016703 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 190992199 405911 79 182 816 2720 SRX3781476 Unrestricted 0.0 Metatranscriptome 3300048982 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 80 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048982 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.9364 -81.6542 3382351 7284 13 2 33 26 Restricted 82.49 Metatranscriptome 3300049800 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Metatranscriptome of woodchip biofilm microbial communities from lab scale WBRs in New York, USA - hf_drw_p2_t3_h8_prok (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049800 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 46654054 110962 88 72 749 389 Unrestricted 69.18 Metatranscriptome 3300012735 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES031 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012735 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 1671039 5995 4 20 144 1114 SRX3009957 Unrestricted 0.0 Metatranscriptome 3300008587 *Microbiome Permanent Draft Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France - CSM2012-AB-F-D Centre National de la Recherche Scientifique (CNRS) 3300008587 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Microbial mats Freshwater lake 18248415 66700 457 203 3857 1698 SRX528795 0.0 Metatranscriptome 3300010190 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1400(2)_T MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010190 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 103922744 265836 32 1 265 5 SRX2521480, SRX2521479 Unrestricted 0.0 Metatranscriptome 3300031097 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_183 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031097 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92029772 -106.94875926 70866226 158767 562 636 3242 3140 SRX8134330 Unrestricted 21.9 Metatranscriptome 3300012382 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_4_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012382 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 129573992 315549 106 682 3548 6806 Unrestricted 0.0 Metatranscriptome 3300012713 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES033 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012713 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 150806102 295348 65 65 263 2603 SRX3010460 Unrestricted 0.0 Metatranscriptome 3300030635 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Bnb4 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030635 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 549078479 1226811 214 208 3611 1056 SRX4546987 Unrestricted 0.0 Metatranscriptome 3300011304 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S17 AAIW_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011304 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 64617268 152692 19 28 2045 1220 SRX3787210 Unrestricted 0.0 Metatranscriptome 3300008546 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.10.4OB.15dpc CCME-COLORADO 3300008546 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 1543457 6732 12 0 366 5 0.0 Metatranscriptome 3300017006 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Narragansett, Rhode Island in f/2 medium with seawater, 14 C, 36 psu salinity and 161 ?mol photons light - Skeletonema grethae CCMP 1804 (MMETSP0578) National Center for Genome Resources 3300017006 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 41.4331 -71.455 20930139 25987 8 5 7 9 0.0 Metatranscriptome 3300031115 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031115 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 63378902 111494 20 10 41 81 SRX5351933 Unrestricted 19.07 Metatranscriptome 3300048953 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 35 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048953 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 42.2817 -81.6717 53857269 126323 70 1 203 56 Restricted 19.71 Metatranscriptome 3300032458 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day12_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032458 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 30390362 52438 24 2 110 11 SRX6858016 Unrestricted 125.72 Metatranscriptome 3300007341 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S2 Surf_B metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007341 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 182997908 509112 4666 2830 11083 9762 SRX3196588 Unrestricted 0.0 Metatranscriptome 3300046572 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - G3-R3-A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046572 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3549 19.0438 92053404 201979 139 253 951 1313 Unrestricted 28.85 Metatranscriptome 3300036168 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of phycosphere-associated microbial communities from LLNL, Livermore, CA, United States - Pt_3-2_filter_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036168 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Phycosphere Diatoms Unclassified defined media 37.6818 -121.768 23760919 29666 14 4 17 70 SRX8240223 Unrestricted 151.64 Metatranscriptome 3300041422 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass leaf microbial community from Lincoln, Canterbury, New Zealand - RGL17_2 MetaT AgResearch, New Zealand, Mosgeil 3300041422 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 4831761 8301 74 83 273 182 0.0 Metatranscriptome 3300021936 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-15M (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021936 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 177488582 295103 37 30 83 124 SRX5203106 Unrestricted 0.0 Metatranscriptome 3300032410 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day7_9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032410 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 33610247 57166 6 1 41 1 SRX6857980 Unrestricted 207.92 Metatranscriptome 3300017138 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in K medium w/o silicate, at 23 C, 0 psu salinity and 710 ?mol photons light - Bigelowiella natans CCMP 1259 (MMETSP1054) National Center for Genome Resources 3300017138 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 36046265 46237 2 4 2 18 0.0 Metatranscriptome 3300006600 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Cas_01_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006600 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 209409870 545355 424 386 1492 832 SRX3360055 Unrestricted 0.0 Metatranscriptome 3300016831 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Buzzards Bay, Massuchussetts in Filtered sea water, 0.001% nutritional yeast, 18 C, 18 psu salinity and 155 ?mol photons light - Uronema sp. Bbcil (MMETSP0018_2) National Center for Genome Resources 3300016831 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 41.745 -70.618 10168814 12267 10 1 21 2 0.0 Metatranscriptome 3300018685 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_065 - TARA_N000000939 (ERX1782360-ERR1712233) Canada's Michael Smith Genome Sciences Centre 3300018685 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -35.2421 26.3048 119849715 255112 13 29 91 158 0.0 Metatranscriptome 3300005415 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005415 Metatranscriptome Analysis megahit v. 0.2.0 No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 94130442 326704 1591 3574 5688 15777 SRX5329105 Unrestricted 0.0 Metatranscriptome 3300008799 *Microbiome Permanent Draft Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample NO3-1 University of Duisburg-Essen 3300008799 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Pond Freshwater Unclassified Eutrophic pond 51.46 7.0 103118441 360678 37 61 812 392 SRX505446 0.0 Metatranscriptome 3300016775 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in f/2 medium with artificial seawater, no silicate, 21 C, 35 psu salinity and 458 ?mol photons light - micromonas sp. RCC472 (MMETSP1387) National Center for Genome Resources 3300016775 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 8.5 -78.22 19632387 15816 4 3 8 2 0.0 Metatranscriptome 3300046037 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046037 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4161 -64.8992 44426290 106323 515 35 789 528 Unrestricted 18.22 Metatranscriptome 3300032812 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_17JUL2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032812 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.372 182305157 314062 61 48 88 277 SRX7519755 Unrestricted 75.62 Metatranscriptome 3300049119 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 83 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049119 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.5186 -82.6406 3527613 7019 3 7 23 28 Restricted 157.41 Metatranscriptome 3300008029 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Puerto Morelos, Mexico - Diploria C C metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300008029 Metatranscriptome Analysis megahit v. 0.2.0 No Yes momedinamunoz@gmail.com Monica _ Medina, Medina Medina No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral host 20.8778 -86.8431 277358247 418041 93 176 309 441 SRX3362342 Unrestricted 0.0 Metatranscriptome 3300047614 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_3_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047614 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 36021380 62239 1 0 10 1 Restricted 118.91 Metatranscriptome 3300019053 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_111 - TARA_N000001823 (ERX1782123-ERR1712241) Canada's Michael Smith Genome Sciences Centre 3300019053 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -16.9581 -100.6588 740416578 1762172 38 71 139 669 0.0 Metatranscriptome 3300017579 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 20 C, 28 psu salinity and 694 ?mol photons light - Amphidinium carterae CCMP 1314 (MMETSP0398) (SRX549005-SRR1294391) National Center for Genome Resources 3300017579 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 41.56 -70.583 1090312 2863 0 0 0 0 0.0 Metatranscriptome 3300054632 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Hassfurt, Bavaria, Germany - FW_CO_018R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300054632 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 50.0554 10.44765 219801988 558520 721 513 2644 2519 Unrestricted 47.46 Metatranscriptome 3300033536 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_18SEP2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300033536 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3956 -85.3757 125065837 237228 139 175 311 834 SRX7706896 Unrestricted 28.18 Metatranscriptome 3300048707 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Metatranscriptome of beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - B3_CE1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048707 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.2552 -122.5085 127397387 246928 3 4 108 43 Restricted 41.53 Metatranscriptome 3300046193 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_6_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046193 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 62207474 107066 1 0 24 0 Restricted 76.69 Metatranscriptome 3300018744 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_080 - TARA_N000001503 (ERX1789402-ERR1719489) Canada's Michael Smith Genome Sciences Centre 3300018744 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -40.6487 -52.1511 190206619 345311 2 10 3 30 0.0 Metatranscriptome 3300038296 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_N3_C1_D3_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038296 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 125917756 265535 538 2016 6055 5251 SRX9391006 Unrestricted 108.25 Metatranscriptome 3300035300 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R1103S12 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300035300 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0387 125567857 271484 388 989 6380 3129 SRX9139991, SRX9139992 Unrestricted 0.0 Metatranscriptome 3300011019 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 38 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011019 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 8911940 21029 48 177 2332 612 Unrestricted 0.0 Metatranscriptome 3300046626 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-144 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046626 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4615 -64.2246 84429855 195196 874 35 1515 762 Unrestricted 17.07 Metatranscriptome 3300052472 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 6-S25Day63 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052472 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 272362294 561102 59 13 198 75 Unrestricted 41.97 Metatranscriptome 3300038915 *Microbiome Permanent Draft Yosemite high-elevation lakes metatranscriptomes Freshwater microbial communities from Upper Cathedral Lake in YNP, CA, USA - Y18-268 Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300038915 Metatranscriptome Analysis megahit v. 1.2.7 released by JGI data releasing policy No Yes eperezcoronel@ucmerced.edu Elisabet Perez Coronel No Environmental Aquatic Lake Freshwater Unclassified freshwater 37.85902778 -119.61555556 161677784 254668 207 332 515 748 0.0 Metatranscriptome 3300016957 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Woods Hole, Massachussetts in DYV freshwater medium, 18 C, 0 psu salinity and 156 ?mol photons light - Dinobryon sp. UTEXLB2267 (MMETSP0020_2) National Center for Genome Resources 3300016957 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 41.57595 -70.64038 27592808 32599 9 1 8 2 0.0 Metatranscriptome 3300043816 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_260 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043816 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 87651557 201618 108 185 4175 922 Unrestricted 55.48 Metatranscriptome 3300008602 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-10 University of Hawaii 3300008602 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 1233185 1979 2 1 98 10 0.0 Metatranscriptome 3300030778 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB6 SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030778 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7585 6.3578 798143560 2176708 5149 1737 11138 4836 SRX3351900 Unrestricted 0.0 Metatranscriptome 3300035615 *Microbiome Permanent Draft Sediment microbial communities from Lake Washington near Medina, WA, United States Metatranscriptome of methane-enriched sediment microbial communities from Lake Washington, WA, United States - HO-FL-1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035615 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment sediment 47.6215 -122.2558 95446296 115876 6 5 14 31 SRX8379888 Unrestricted 187.59 Metatranscriptome 3300036527 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Particle Exp01_T0_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036527 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 80333479 168647 584 158 1055 1738 SRX8842589 Unrestricted 36.99 Metatranscriptome 3300019110 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from upper and lower halo cline of Thetis Basin, Eastern Mediterranean Sea Metatranscriptome of marine microbial communities from lower halo cline of Thetis Basin, Eastern Mediterranean Sea - 13_4 Woods Hole Oceanographic Institution 3300019110 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 34.4 22.08 68094443 138237 233 14 734 59 0.0 Metatranscriptome 3300019067 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_132 - TARA_N000002412 (ERX1782229-ERR1712040) Canada's Michael Smith Genome Sciences Centre 3300019067 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 31.4868 -159.0749 9066130 22777 12 25 143 244 0.0 Metatranscriptome 3300019158 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Soil microbial communities from Bohemian Forest, Czech Republic - CSI1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019158 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Soil 49.043 13.6183 11903146 25469 2 124 329 900 SRX3937172 Unrestricted 0.0 Metatranscriptome 3300007161 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_top_diel_T=8 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007161 Metatranscriptome Analysis megahit v. 0.2.0 No Yes binskeep@montana.edu, binskeep@montana.edu; jim.fredrickson@pnnl.gov William Inskeep, William P. Inskeep; Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Microbial mats 44.7315 -110.7113 31213865 75288 3016 18 5142 36 SRX2522149 Unrestricted 0.0 Metatranscriptome 3300018843 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - LD3200M_ls1 J. Craig Venter Institute (JCVI) 3300018843 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 58.581234 18.232801 121192165 491211 78 37 827 267 0.0 Metatranscriptome 3300031477 *Microbiome Permanent Draft Soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - STER_R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031477 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thb15@psu.edu Terrence Bell No Engineered Artificial ecosystem Surface biofilm Soil microcosm Unclassified soil 40.7997 -77.8629 19788102 30794 17 0 34 12 SRX5811527 Unrestricted 512.15 Metatranscriptome 3300030954 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E4_S_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030954 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 536461908 1846482 363 308 634 893 SRX3341220 Unrestricted 0.0 Metatranscriptome 3300036461 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Metatranscriptome of soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_Dec_plot5_rep3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036461 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6541 -80.6298 153253635 344940 374 383 3262 2220 SRX8187628 Unrestricted 42.35 Metatranscriptome 3300043796 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA51 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043796 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Unclassified Soil Unclassified soil 35.7877 -78.6442 31073657 68795 172 318 2113 2074 Unrestricted 46.35 Metatranscriptome 3300027008 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0514-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300027008 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 134471991 257185 8 7 5 62 SRX5256579 Unrestricted 181.87 Metatranscriptome 3300003732 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome C0912_C43A7_80 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003732 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.46 -122.78 8016886 19493 109 94 812 1465 SRX2555015 Unrestricted 0.0 Metatranscriptome 3300016989 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Northern Baffin Bay in L1 medium with sea water and antibiotics, 6 C, 36 psu salinity and 579 ?mol photons light - unclassified eukaryote CCMP 2097 (MMETSP0976) National Center for Genome Resources 3300016989 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 77.0014 -77.2383 29684318 34077 25 5 39 5 0.0 Metatranscriptome 3300012776 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Montjoie, Canada - M_130207_X_mt (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012776 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.4091 -72.0994 203763161 425278 343 99 3437 13807 SRX3015191 Unrestricted 0.0 Metatranscriptome 3300047671 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81958c5c-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047671 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 64798653 162270 281 193 1271 1198 Unrestricted 29.59 Metatranscriptome 3300043805 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_123 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043805 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 76753894 179377 171 355 1758 1770 Unrestricted 55.78 Metatranscriptome 3300007602 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_B6L_H (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007602 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 74362704 248699 14400 3110 38662 7898 SRX5781226 Unrestricted 0.0 Metatranscriptome 3300002391 *Microbiome Permanent Draft Biogas fermentation microbial communities from biogas plants in Germany Biogas fermentation microbial communities from Germany - Plant 2 RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002391 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes asczyrba@techfak.uni-bielefeld.de Alexander Sczyrba No Engineered Bioreactor Digestate Anaerobic Unclassified Biogas fermentantion 52.0385 8.4956 226126583 519937 7 15 303 28 SRX2501891 Unrestricted 0.0 Metatranscriptome 3300011331 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S17 Surf_B metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011331 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 163011264 399205 215 59 1385 1890 SRX3787213 Unrestricted 0.0 Metatranscriptome 3300035606 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0606M02 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300035606 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8962 -97.0386 52913081 108613 307 678 5994 2158 SRX9140012, SRX9140013 Unrestricted 0.0 Metatranscriptome 3300006419 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006419 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 213835489 569432 1833 11677 4179 28365 SRX3196357 Unrestricted 0.0 Metatranscriptome 3300034306 *Microbiome Permanent Draft Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S97 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034306 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes colin.averill@usys.ethz.ch Colin Averill No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 36.0 -78.0 31139852 51188 2 6 64 47 SRX7613796 Unrestricted 776.45 Metatranscriptome 3300030676 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 40_T2E_3236EL1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030676 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 99767510 115901 0 7 23 324 SRX4646595 Unrestricted 0.0 Metatranscriptome 3300021317 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Washington, United States - R1088 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021317 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 46.295 -124.183 124226561 255247 318 413 2306 7001 SRX4015455 Unrestricted 0.0 Metatranscriptome 3300045914 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Metatranscriptome of soil microbial communities from peatland in Alberta, Canada - SB-12-nonsedgy 0-10 cm (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300045914 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4549 -114.8842 35682187 84909 196 177 471 726 Unrestricted 92.65 Metatranscriptome 3300038861 *Microbiome Permanent Draft Yosemite high-elevation lakes metatranscriptomes Freshwater microbial communities from Upper Cathedral Lake in YNP, CA, USA - Y18-213 Vincent J. Coates Genomic Sequencing Laboratory at UC Berkeley 3300038861 Metatranscriptome Analysis megahit v. 1.2.7 released by JGI data releasing policy No Yes eperezcoronel@ucmerced.edu Elisabet Perez Coronel No Environmental Aquatic Lake Freshwater Unclassified freshwater 37.85902778 -119.61555556 47553377 82522 114 277 326 716 0.0 Metatranscriptome 3300055175 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T3_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055175 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 51194418 103980 49 21 132 75 Unrestricted 0.0 Metatranscriptome 3300016963 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in NEPC medium with nocodazole, at 20 C, 30 psu salinity and 493 ?mol photons light - Chaetoceros neogracile CCMP 1317 (MMETSP0754) National Center for Genome Resources 3300016963 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 33650163 32850 31 12 33 21 0.0 Metatranscriptome 3300000339 *Microbiome Draft Soil microbial communities from permafrost in Bonanza Creek, Alaska Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active layer cDNA A2 Metatranscriptome DOE Joint Genome Institute (JGI) 3300000339 Metatranscriptome Analysis released per Tijana No Yes mwaldrop@usgs.gov mark waldrop No Environmental Terrestrial Unclassified Soil Permafrost Soil 64.7 -148.3 12254227 42824 358 190 3304 627 0.0 Metatranscriptome 3300032792 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_17JUL2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032792 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3951 -85.3736 156924849 266408 124 77 175 448 SRX7519754 Unrestricted 46.44 Metatranscriptome 3300008819 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of annulated tree boas from Steinhart Aquarium in San Francisco, USA - CAS03_Brain University of California, San Francisco 3300008819 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Brain Nervous system Unclassified Brain 6614130 18298 0 0 0 0 SRX170630 0.0 Metatranscriptome 3300046098 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046098 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4161 -64.8992 17783910 41439 318 21 494 413 Unrestricted 16.74 Metatranscriptome 3300022522 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022522 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 236667951 553226 404 775 6816 5596 SRX4404448 Unrestricted 0.0 Metatranscriptome 3300042497 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_35E_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042497 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 51268867 70997 1 0 1 0 Unrestricted 267.5 Metatranscriptome 3300051603 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 72_50_9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051603 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 28879462 78031 221 231 1950 1418 Unrestricted 95.53 Metatranscriptome 3300017272 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine host-associated eukaryotic communities from Pacific Ocean in f/2 medium w/o silicate, 25 C, 35 psu salinity and 713 ?mol photons light - Gambierdiscus australes CAWD 149 (MMETSP0766_2) National Center for Genome Resources 3300017272 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Microbial Unclassified Dinoflagellates Unclassified marine host-associated 35.0 173.0 54776659 84203 69 11 117 14 0.0 Metatranscriptome 3300059645 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 18R_SW_T1_R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059645 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 378579087 940620 629 337 1941 1998 Unrestricted 39.96 Metatranscriptome 3300018579 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_072 - TARA_N000000845 (ERX1782161-ERR1712236) Canada's Michael Smith Genome Sciences Centre 3300018579 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -8.757 -17.9245 34123578 79730 0 10 2 78 0.0 Metatranscriptome 3300006595 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Gly_01_SludgeMetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006595 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified Anaerobic digestor sludge 40.1191 -88.1952 125672082 352957 264 195 1027 455 SRX3362009 Unrestricted 0.0 Metatranscriptome 3300021864 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S21 C1 B12 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021864 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 52.621788 -16.497225 9485581 19831 33 40 97 128 SRX5204609 Unrestricted 0.0 Metatranscriptome 3300019227 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNTR3_MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019227 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 34.65 135.05 183230217 372063 32 71 6849 562 SRX3903412 Unrestricted 0.0 Metatranscriptome 3300017197 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Atlantic Ocean in K medium with artificial sea water, no silicate, 21 C, 35 psu salinity and 761 ?mol photons light - Isochrysis sp. CCMP1244 (MMETSP1090) National Center for Genome Resources 3300017197 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 38.3048 -69.6192 24676584 35404 4 1 6 1 0.0 Metatranscriptome 3300016736 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011508BT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016736 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 238852736 515758 118 442 1997 5752 SRX3780725 Unrestricted 0.0 Metatranscriptome 3300037766 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - F18NovK (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037766 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4336 16.6836 89831922 187554 94 581 604 1954 SRX9165017 Unrestricted 48.77 Metatranscriptome 3300010248 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_2000 MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010248 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 94859904 182169 2712 226 20416 989 SRX2740057, SRX2740056 Unrestricted 0.0 Metatranscriptome 3300009721 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from Louisiana Shelf, Gulf of Mexico - GoM_2015_C6C_174_18m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009721 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 28.8679 -90.4764 4426787 10151 60 54 4167 1075 Unrestricted 0.0 Metatranscriptome 3300051253 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Schonbrunner Wald, Bavaria, Germany - BW_TH_030R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051253 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.9061 13.557145 105963755 272215 282 251 1322 1030 Unrestricted 77.8 Metatranscriptome 3300018825 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_081 - TARA_N000001436 (ERX1809755-ERR1740127) Canada's Michael Smith Genome Sciences Centre 3300018825 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -44.5342 -52.455 171505461 452465 3 3 22 67 0.0 Metatranscriptome 3300017015 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in ESM medium, at 20 C, 35 psu salinity and 275 ?mol photons light - Chlorarachnion reptans CCCM 449 (MMETSP0109) National Center for Genome Resources 3300017015 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 35259019 35923 5 8 4 13 0.0 Metatranscriptome 3300020609 *Microbiome Finished Microbial communities from sugarcane rhizosphere in Campinas, Brazil Microbial communitiy from sucarcane rhizosphere variety IAC under irrigated condition in Campinas, Brazil - Sample IAC Illumina 3300020609 Metatranscriptome Analysis de novo assembly using IDBA-UD software released by JGI data releasing policy No Yes leticiabp11@gmail.com Leticia Pereira No Host-associated Plants Rhizosphere Roots Unclassified rhizosphere -22.33333333 -47.1 169013738 355801 172 369 4770 1818 0.0 Metatranscriptome 3300031106 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T17 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031106 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 45448083 82567 48 43 81 210 SRX5352186 Unrestricted 23.68 Metatranscriptome 3300046279 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_4_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046279 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 36288972 61098 1 2 21 6 Restricted 176.73 Metatranscriptome 3300031038 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_S14_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031038 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -3.9 -28.5 540669359 1956049 599 531 1050 1524 SRX3342283 Unrestricted 0.0 Metatranscriptome 3300003288 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA Grassland soil microbial communities from Hopland, California, USA - Sample H4_Rhizo_44 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003288 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes pettridge2@llnl.gov, nuccio1@llnl.gov; pettridge2@llnl.gov Jennifer Pett-Ridge, Erin Nuccio; Jennifer Pett-Ridge No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.972988 -123.116539 5529794 14227 30 80 462 568 SRX2563668 Unrestricted 0.0 Metatranscriptome 3300004527 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 118_HOW13 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004527 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 25013509 51640 75 7 298 15 SRX2780259 Unrestricted 0.0 Metatranscriptome 3300016697 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES156 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016697 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 43.099 -89.405 106182227 224745 184 238 3066 6146 SRX3780233 Unrestricted 0.0 Metatranscriptome 3300021903 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from Norwegian Sea - 20m ARK-7M ARK-7-3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021903 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 100489278 189604 55 31 115 155 SRX3337408 Unrestricted 0.0 Metatranscriptome 3300059623 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 66R_SW_T2_R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059623 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 281195044 706193 454 324 2045 1946 Unrestricted 58.77 Metatranscriptome 3300017033 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, no silica, at 16 C, 34 psu salinity and 756 ?mol photons light - Pleurochrysis carterae CCMP 645 (MMETSP1138) National Center for Genome Resources 3300017033 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 28524263 37480 16 7 22 11 0.0 Metatranscriptome 3300048967 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 54 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048967 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.6663 -82.0816 28042965 61738 101 40 260 244 Restricted 26.29 Metatranscriptome 3300008562 *Microbiome Permanent Draft Planktonic microbial communities from coastal waters of California, USA Planktonic microbial communities from coastal waters of California, USA - Canon-49 University of Hawaii 3300008562 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified Costal water 1173449 2136 5 1 187 56 0.0 Metatranscriptome 3300013106 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial functions of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate b Georgia Genomics Facility 3300013106 Metatranscriptome Analysis Trinity 2.03 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 34375628 107785 6902 1718 15999 4779 0.0 Metatranscriptome 3300026563 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Atlam_RepA_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026563 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 162603632 347506 98 257 1879 1751 SRX4797208 Unrestricted 27.72 Metatranscriptome 3300040761 *Microbiome Finished Lab enriched marine microbial communities from the Bohai Gulf, China Lab enriched marine microbial communities from the Bohai Gulf, China - OOL Hebei Normal University of Science &Technology 3300040761 Metatranscriptome Analysis Trinity v. 2.4.0 released by Si Li No Yes jackeikee@aliyun.com Si Li No Environmental Aquatic Gulf Marine Unclassified Marine 38.26 118.24 237518151 527783 53 161 251 395 0.0 Metatranscriptome 3300034661 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034661 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 381306864 896719 275 1259 3817 5594 SRX7519996 Unrestricted 28.59 Metatranscriptome 3300016804 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Kattegat in HESNW medium w/o silica, 22 C, 30 psu salinity and 527 ?mol photons light - Gyrodinium dominans SPMC 103 (MMETSP1148) National Center for Genome Resources 3300016804 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 203724 654 0 0 0 0 0.0 Metatranscriptome 3300004619 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 45 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004619 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 157780328 489146 4391 2446 16782 5670 Unrestricted 0.0 Metatranscriptome 3300008559 *Microbiome Permanent Draft Microbial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean Microbial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean - CTD-06-47 University of Michigan 3300008559 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vents 43752882 162398 1255 94 10950 1128 0.0 Metatranscriptome 3300001815 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring microbial communities from Elkhorn Slough, Monterey Bay, USA - MR2A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300001815 Metatranscriptome Analysis No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hypersaline Non-marine Saline and Alkaline Microbial mats Hypersaline mat 36.83 -121.785 1183569342 3431932 90 18 508 81 SRX3311486 Unrestricted 0.0 Metatranscriptome 3300007587 *Microbiome Permanent Draft Active sludge and wastewater microbial communities from Klosterneuburg, Austria Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_D6R_HD (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007587 Metatranscriptome Analysis megahit v. 0.2.0 No Yes wagner@microbial-ecology.net Michael Wagner No Engineered WWTP Activated sludge Aerobic digester Unclassified Activated Sludge 48.3 16.2 36961630 126178 10370 3272 26014 7943 SRX5781227 Unrestricted 0.0 Metatranscriptome 3300051249 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Lindberg, Bavaria, Germany - BW_CO_018R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051249 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 49.039599 13.313165 54986502 141786 309 298 1356 1236 Unrestricted 129.76 Metatranscriptome 3300031008 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Litter N1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031008 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ake.olson@slu.se; fmartin1954@me.com Ake Olson; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 776796043 1998577 907 376 2129 1199 SRX3345109 Unrestricted 0.0 Metatranscriptome 3300046111 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-218 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046111 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4604 -64.2162 134682737 313913 563 34 924 461 Unrestricted 18.87 Metatranscriptome 3300017212 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in f/2 medium w/o silicate, 4 C, 31 psu salinity and 521 ?mol photons light - Myrionecta rubra CCMP 2563 (MMETSP0798) National Center for Genome Resources 3300017212 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 34196124 56366 10 6 9 2 0.0 Metatranscriptome 3300018519 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_020 - TARA_A100000759 (ERX1782467-ERR1711905) Canada's Michael Smith Genome Sciences Centre 3300018519 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 34.4064 15.043 17968596 35738 2 14 6 54 0.0 Metatranscriptome 3300002767 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS1_TP1_13L 3300002767 Metatranscriptome Analysis released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 921200 3339 21 1 34 2 0.0 Metatranscriptome 3300018741 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_152 - TARA_N000002797 (ERX1789651-ERR1719275) Canada's Michael Smith Genome Sciences Centre 3300018741 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 43.7056 -16.8794 135038959 319034 7 26 46 281 0.0 Metatranscriptome 3300023685 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 50R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023685 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 99709064 214538 96 62 580 1251 SRX4474687 Unrestricted 31.83 Metatranscriptome 3300016860 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Saline di Torre Colimena (Taranto) in autoclaved artificial seawater, 19 C, 33 psu salinity and 415 ?mol photons light - Fabrea salina (MMETSP1345) National Center for Genome Resources 3300016860 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 15889849 15616 7 12 7 20 0.0 Metatranscriptome 3300031136 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T16 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031136 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 72739551 138639 76 54 89 266 SRX5352185 Unrestricted 19.52 Metatranscriptome 3300021296 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States - R881 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021296 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 46.217 -123.782 46907019 104705 201 322 1077 5454 SRX4015262 Unrestricted 0.0 Metatranscriptome 3300009845 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 3, 3m depth; RNA IDBA-UD Marine Biological Laboratory 3300009845 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 8.23 27096682 60069 365 478 1718 1125 0.0 Metatranscriptome 3300016706 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Gulf of Naples in f/2 medium with Monterey Bay seawater w/o silicate, 21 C, 35 psu salinity and 305 ?mol photons light - micromonas sp. CCMP1646 (MMETSP1080) National Center for Genome Resources 3300016706 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 40.75 14.33 17732743 15747 3 8 4 8 0.0 Metatranscriptome 3300026448 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 57R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026448 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 151068488 329966 256 53 443 891 SRX4795986 Unrestricted 20.5 Metatranscriptome 3300016895 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in Minimal Essential Medium with 10% fetal bovine serum, 13 C, 35 psu salinity and 518 ?mol photons light - unclassified eukaryote NY0313808BC1 (MMETSP0099_2) National Center for Genome Resources 3300016895 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 40.49657 -74.17591 14104225 18124 1 6 1 3 0.0 Metatranscriptome 3300008879 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of annulated tree boas from Steinhart Aquarium in San Francisco, USA - CAS04_Lung University of California, San Francisco 3300008879 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Lung Respiratory system Unclassified Lung 2046249 6442 0 0 0 0 SRX170612 0.0 Metatranscriptome 3300037757 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of sediment microbial communities from Prado wetlands, California, USA - CSM_Prado_Oct18_PM_Bottom (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037757 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 25683659 51820 35 138 1258 571 SRX9164532 Unrestricted 72.16 Metatranscriptome 3300038763 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities of Labiotermes labralis from French Guiana - 62_rP2 University of Luxembourg 3300038763 Metatranscriptome Analysis CLC Genomics Workbench v. 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 5.06224 -53.047407 93921926 189127 2 2 4 7 0.0 Metatranscriptome 3300032720 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 rumen fluid (Eukaryote Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032720 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 40.102108 -88.227299 155904794 273441 206 118 817 149 SRX5780727 Unrestricted 0.0 Metatranscriptome 3300012716 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES130 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012716 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 152692590 310811 79 153 615 2788 SRX3011159 Unrestricted 0.0 Metatranscriptome 3300010986 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-7 (Eukaryote Community Metatranscriptome) (version 9) (version 6) DOE Joint Genome Institute (JGI) 3300010986 Metatranscriptome Analysis MEGAHIT v. 1.0.4b No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 18.7998 -20.70285 998692083 2245372 706 1184 1058 2546 SRX5724273 Unrestricted 0.0 Metatranscriptome 3300018940 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_022 - TARA_A100000536 (ERX1782257-ERR1712105) Canada's Michael Smith Genome Sciences Centre 3300018940 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.8312 17.3952 517862076 920584 4 60 43 365 0.0 Metatranscriptome 3300030898 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T24 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030898 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 49466251 87980 58 32 75 241 SRX5794487 Unrestricted 17.38 Metatranscriptome 3300028848 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Gln2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028848 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 42226152 82201 6 7 261 51 SRX5356131 Unrestricted 105.79 Metatranscriptome 3300016834 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in modified f/2 medium with seawater, 3 C, 33.6 psu salinity and 728 ?mol photons light - Chaetoceros debilis MM31A-1 (MMETSP0149) National Center for Genome Resources 3300016834 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -49.6 2.1 24361616 24782 2 4 4 2 0.0 Metatranscriptome 3300008543 *Microbiome Permanent Draft Microbial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean Microbial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean - CTD-08-49 University of Michigan 3300008543 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vents 28874195 107741 1150 35 10383 667 0.0 Metatranscriptome 3300018627 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_135 - TARA_N000002172 (ERX1782269-ERR1711925) Canada's Michael Smith Genome Sciences Centre 3300018627 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 33.0339 -121.8782 59185642 171301 4 10 26 61 0.0 Metatranscriptome 3300046645 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - S2-R1-A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046645 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3571 19.051 111552940 247087 530 294 1352 1446 Unrestricted 50.38 Metatranscriptome 3300048956 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 38 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048956 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 42.4295 -81.2044 1747037 3679 4 7 37 31 Restricted 349.39 Metatranscriptome 3300035589 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - 28L (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035589 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4327 16.6819 96889850 203414 179 164 3245 836 SRX8209554 Unrestricted 59.48 Metatranscriptome 3300008286 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34718 J. Craig Venter Institute (JCVI) 3300008286 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 25744 69 0 0 4 0 0.0 Metatranscriptome 3300017003 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no silicate, 15 C, 29.4 psu salinity and 461 ?mol photons light - Heterosigma akashiwo CCMP 3107 (MMETSP0409) National Center for Genome Resources 3300017003 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 52.5758 -128.5003 16423655 34740 19 6 36 17 0.0 Metatranscriptome 3300019170 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLI3 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019170 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified Plant litter 49.0431 13.617 9225255 18344 7 288 471 1768 SRX5222548, SRX3937007 Unrestricted 0.0 Metatranscriptome 3300050747 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T3_1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050747 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 54083972 88003 12 5 91 21 Unrestricted 395.11 Metatranscriptome 3300021933 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Marine eukaryotic phytoplankton communities from the Norwegian Sea - 20m ARK-7M Euk - ARK-7-1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021933 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 137438290 259446 58 49 136 178 SRX2554370 Unrestricted 0.0 Metatranscriptome 3300003946 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS908_80_12L10 Marine Biological Laboratory 3300003946 Metatranscriptome Analysis CLC Genomics WB7 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 813278 1922 26 2 36 0 0.0 Metatranscriptome 3300011301 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S12 O2min_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011301 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 65168784 150412 55 41 10046 2643 SRX3196645 Unrestricted 0.0 Metatranscriptome 3300002376 *Microbiome Permanent Draft Biogas fermentation microbial communities from biogas plants in Germany Biogas fermentation microbial communities from Germany - Plant 4 RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002376 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes asczyrba@techfak.uni-bielefeld.de Alexander Sczyrba No Engineered Bioreactor Digestate Anaerobic Unclassified Biogas fermentantion 52.0385 8.4956 82753553 175112 6 2 165 9 SRX2501908 Unrestricted 0.0 Metatranscriptome 3300018862 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_102 - TARA_N000001652 (ERX1789608-ERR1719146) Canada's Michael Smith Genome Sciences Centre 3300018862 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes tully.bj@gmail.com; mbsulli@email.arizona.edu Benjamin Tully; Matthew Sullivan No Environmental Aquatic Unclassified Marine Unclassified Marine -5.2669 -85.2732 198707868 524411 9 20 27 173 0.0 Metatranscriptome 3300028727 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Arg1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028727 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 50926476 98867 8 8 207 45 SRX5356143 Unrestricted 77.14 Metatranscriptome 3300028097 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepA_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028097 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 45.0061 -74.7949 125995472 241419 53 94 132 496 SRX5245735 Unrestricted 24.62 Metatranscriptome 3300033533 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_18SEP2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300033533 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3941 -85.3741 423225928 747120 182 124 318 733 SRX7706899 Unrestricted 24.83 Metatranscriptome 3300066539 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Metatranscriptome of woodchip biofilm microbial communities from lab scale WBRs in New York, USA - hf_drw_p2_t6_h16_prok (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300066539 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 300149053 688852 129 106 1236 603 Unrestricted 0.0 Metatranscriptome 3300052765 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_71 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052765 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 169122374 440079 100 139 916 734 Unrestricted 58.35 Metatranscriptome 3300018859 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_039 - TARA_N000000012 (ERX1789645-ERR1719429) Canada's Michael Smith Genome Sciences Centre 3300018859 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 18.5745 66.4895 234825131 516171 2 36 13 322 0.0 Metatranscriptome 3300019056 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS669_0p1 J. Craig Venter Institute (JCVI) 3300019056 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 65.73045 22.445047 1080996 5208 2 1 30 32 0.0 Metatranscriptome 3300017075 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in K medium w/o silicate, at 25 C, 35 psu salinity and 274 ?mol photons light - Lotharella sp. CCMP 622 (MMETSP0040_2) National Center for Genome Resources 3300017075 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 26715637 40847 1 5 1 7 0.0 Metatranscriptome 3300030565 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Bnb12 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030565 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 464005934 994410 109 136 1443 696 SRX4547032 Unrestricted 0.0 Metatranscriptome 3300038293 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_OW2_C1_D6_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038293 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 46859916 98683 247 139 2557 470 SRX9391586 Unrestricted 306.89 Metatranscriptome 3300046219 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_4_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046219 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 23631279 43410 1 0 24 0 Restricted 451.78 Metatranscriptome 3300046196 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_6_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046196 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 92025719 159243 2 0 26 1 Restricted 107.17 Metatranscriptome 3300020090 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate b, metaT Georgia Genomics Facility 3300020090 Metatranscriptome Analysis Trinity 2.06 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 8284759 25777 4038 927 8347 2513 0.0 Metatranscriptome 3300016942 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in GSe medium with ammonium, 22 C, 32 psu salinity and 443 ?mol photons light - Pelagomonas calceolata CCMP 1756 (MMETSP0889) National Center for Genome Resources 3300016942 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 30.8333 -136.8333 22448723 22943 2 3 5 3 0.0 Metatranscriptome 3300046623 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-139 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046623 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4615 -64.2246 113150702 263622 988 49 1693 627 Unrestricted 15.91 Metatranscriptome 3300052398 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052398 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 92553279 246440 165 137 698 797 Unrestricted 77.54 Metatranscriptome 3300030691 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 38_T1E_3236EL1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030691 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 69594426 93948 1 1 13 238 SRX4646564 Unrestricted 0.0 Metatranscriptome 3300043813 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_11 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043813 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 77586462 178305 256 436 1940 2122 Unrestricted 73.86 Metatranscriptome 3300034479 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034479 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 50171948 108601 489 1160 7083 5473 SRX7519998 Unrestricted 62.46 Metatranscriptome 3300030590 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cb8 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030590 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 301713492 661076 68 66 1362 408 SRX4547082 Unrestricted 0.0 Metatranscriptome 3300012965 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012965 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 37.1849 -76.1104 138638880 306082 224 1056 1367 12471 SRX3007437 Unrestricted 0.0 Metatranscriptome 3300008525 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.1ob.11.15dpc CCME-COLORADO 3300008525 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 3049218 12602 35 2 512 6 0.0 Metatranscriptome 3300020065 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT499_16_1Ra (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300020065 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Floodplain Soil Unclassified Soil 38.9231 -106.9513 213957701 505310 138 847 11210 5684 SRX4809410 Unrestricted 0.0 Metatranscriptome 3300060334 *Microbiome Permanent Draft Sediment microbial communities from the PNNL SFA Hanford 300 Area, Columbia River, WA, USA Metatranscriptome of sediment microbial communities from in situ POM Reactor at the PNNL SFA Hanford 300 Area, Columbia River, WA, USA - Shallow Unashed with POM (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300060334 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes eroden@geology.wisc.edu Eric Roden No Environmental Aquatic River Freshwater Sediment Sediment 46.467778 -119.464444 76437815 190116 291 210 657 926 Restricted 119.79 Metatranscriptome 3300003699 *Microbiome Permanent Draft Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA Groundwater microbial communities from S. Glens Falls, New York, USA - Field experiment aqueous naphthalene treatment rep 1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003699 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes elm3@cornell.edu Eugene Madsen No Environmental Aquatic Groundwater Deep subsurface Contaminated Groundwater 43.099444 -73.604444 28611227 89564 12 608 231 2971 SRX2552963, SRX2552964 Unrestricted 0.0 Metatranscriptome 3300012874 *Microbiome Permanent Draft Synthetic bacterial communities of pure cultures isolated from sediment of Lake Washington, USA Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under high oxygen condition - MT methane_oxidizing 14strains_1hour-b (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012874 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes milachis@u.washington.edu Ludmila Chistoserdova No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 47.6553 -122.3035 28970687 50093 2 0 430 3 SRX3015611 Unrestricted 0.0 Metatranscriptome 3300022718 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022718 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 236226117 565545 475 795 9937 5779 SRX4417067 Unrestricted 0.0 Metatranscriptome 3300055302 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP5.1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055302 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 417596306 840776 28 40 247 258 Unrestricted 57.31 Metatranscriptome 3300010880 *Microbiome Permanent Draft Forest soil eukaryotic communities from Alaska, USA, for a soil warming experiment in a boreal forest Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010880 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes treseder@uci.edu Kathleen Treseder No Environmental Terrestrial Boreal forest/Taiga Soil Unclassified Boreal forest soil 63.883 -145.733 1373532340 3140209 109 319 6029 2382 SRX3007278 Unrestricted 0.0 Metatranscriptome 3300006729 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S2 250_A metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006729 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 168077661 509125 5286 2561 13853 8242 SRX3196592 Unrestricted 0.0 Metatranscriptome 3300029680 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_50m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029680 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 69819501 139687 132 38 2460 243 SRX5338154 Unrestricted 34.93 Metatranscriptome 3300018846 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_092 - TARA_N000001299 (ERX1789404-ERR1719503) Canada's Michael Smith Genome Sciences Centre 3300018846 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -33.6895 -71.998 243622394 502277 9 5 9 64 0.0 Metatranscriptome 3300019049 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_064 - TARA_N000000531 (ERX1782179-ERR1712232) Canada's Michael Smith Genome Sciences Centre 3300019049 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -29.5333 37.9117 1364129644 3124934 361 107 1259 1494 0.0 Metatranscriptome 3300032470 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red2_24May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032470 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 958442676 1646028 18 7 20 150 SRX5801157 Unrestricted 22.0 Metatranscriptome 3300010122 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_4_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010122 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 78290917 183006 57 587 3645 4564 Unrestricted 0.0 Metatranscriptome 3300006375 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_>0.8_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006375 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 108356578 375334 17097 12801 44428 34496 SRX3196155 Unrestricted 0.0 Metatranscriptome 3300043793 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_194 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043793 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 55887872 127231 325 543 2020 2977 Unrestricted 60.48 Metatranscriptome 3300042408 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042408 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 66870276 150122 291 694 2953 3712 Unrestricted 40.47 Metatranscriptome 3300052337 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of lake water microbial communities from Sandhills, Nebraska, United States - NSL_Bean_2018 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052337 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@dbi.udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.7748 -102.5295 150031237 349459 354 197 1875 896 Unrestricted 201.88 Metatranscriptome 3300059478 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 58R_AW_T2_R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059478 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 205380521 505544 712 377 2089 2123 Unrestricted 51.52 Metatranscriptome 3300012773 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Simoncouche, Canada - S_140212_E_mt (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012773 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.2311 -71.2508 178667690 388339 511 231 10161 4907 SRX3015297 Unrestricted 0.0 Metatranscriptome 3300040764 *Microbiome Finished Lab enriched marine microbial communities from the Bohai Gulf, China Lab enriched marine microbial communities from the Bohai Gulf, China - ONL Hebei Normal University of Science &Technology 3300040764 Metatranscriptome Analysis Trinity v. 2.4.0 released by Si Li No Yes jackeikee@aliyun.com Si Li No Environmental Aquatic Gulf Marine Unclassified Marine 38.26 118.24 173431201 347722 33 135 96 488 0.0 Metatranscriptome 3300049538 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_A_3_control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049538 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 65764265 160505 222 126 769 848 Unrestricted 193.5 Metatranscriptome 3300034664 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034664 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 337051061 792202 312 1255 4836 5511 SRX7520000 Unrestricted 31.09 Metatranscriptome 3300016801 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in NEPC medium w/o nitrate, at 20 C, 30 psu salinity and 538 ?mol photons light - Amphiprora sp. CCMP467 (MMETSP0726) National Center for Genome Resources 3300016801 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 17478560 21178 10 7 12 13 0.0 Metatranscriptome 3300003840 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Bulk soil microbial communities from Hopland, California, USA - H2_Bulk_Litter_50 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003840 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes mkfstone@berkeley.edu, mkfstone@berkeley.edu; nuccio1@llnl.gov Mary Firestone, Mary Firestone; Erin Nuccio No Environmental Terrestrial Grasslands Soil Bulk soil Soil 38.97364 -123.117453 88333158 252779 369 1269 1882 5272 SRX3336240 Unrestricted 0.0 Metatranscriptome 3300009724 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from Louisiana Shelf, Gulf of Mexico - GoM_2015_C6C_245_18m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009724 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 28.8679 -90.4764 16488885 34208 200 114 5778 1739 Unrestricted 0.0 Metatranscriptome 3300048696 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Metatranscriptome of beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - B1_RE1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048696 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Rectum rectum 49.2552 -122.5085 46604934 94592 2 0 75 15 Restricted 85.04 Metatranscriptome 3300041465 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover leaf microbial community from Lincoln, Canterbury, New Zealand - WCL17_1 MetaT AgResearch, New Zealand, Mosgeil 3300041465 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 5050170 8965 107 159 494 383 0.0 Metatranscriptome 3300004464 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 81 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004464 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 21087678 72734 3777 757 10526 1550 Unrestricted 0.0 Metatranscriptome 3300028106 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 66R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028106 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 241823508 503701 201 39 330 584 SRX5172114 Unrestricted 27.07 Metatranscriptome 3300021274 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.268 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021274 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.313 -123.997 44393839 92326 270 785 5915 6129 SRX4016023 Unrestricted 0.0 Metatranscriptome 3300037597 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Metatranscriptome of lab enriched marine microbial communities from Marineland, Florida, USA - SWP_R4_TP1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037597 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6475 -82.3464 101653949 212213 198 57 439 280 SRX9146662 Unrestricted 63.86 Metatranscriptome 3300042017 *Microbiome Permanent Draft Seawater microbial communities from North Atlantic Ocean and Narragansett Bay, Rhode Island, USA Metatranscriptome of estuary water microbial communities from Narragansett Bay, Rhode Island, USA - E1_AmbA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042017 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pmoisander@gmail.com Pia Moisander No Environmental Aquatic Intertidal zone Marine Estuary Estuary water 41.9078 -71.5683 280959055 563102 180 77 339 453 SRX14871058 Unrestricted 26.82 Metatranscriptome 3300016966 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Long Island Sound grown at 20 C, 30 psu salinity and 173 ?mol photons light - Heterosigma akashiwo CCMP 452 (MMETSP0897_2) National Center for Genome Resources 3300016966 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 41.0 -73.0 12763226 24318 8 9 10 7 0.0 Metatranscriptome 3300046418 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_49W_Fire (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046418 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1407 -81.3642 35150339 83233 121 150 852 826 Unrestricted 48.36 Metatranscriptome 3300002670 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI074_120m_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002670 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 10894947 27602 55 31 416 666 Unrestricted 0.0 Metatranscriptome 3300011298 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S2 DCM_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011298 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 51472400 124226 74 25 1583 1535 SRX3196591 Unrestricted 0.0 Metatranscriptome 3300057245 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T1_4 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300057245 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 116195590 183535 25 7 286 45 Unrestricted 0.0 Metatranscriptome 3300041490 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover leaf microbial community from Lincoln, Canterbury, New Zealand - WCL18_9 MetaT AgResearch, New Zealand, Mosgeil 3300041490 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 10775451 18034 56 118 156 167 0.0 Metatranscriptome 3300051606 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 72_100_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051606 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 229619457 599881 277 240 1687 1427 Unrestricted 51.09 Metatranscriptome 3300004585 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 16_LOW5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004585 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 40184279 108876 1935 45 6037 113 SRX2779778 Unrestricted 0.0 Metatranscriptome 3300018887 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_111 - TARA_N000001826 (ERX1789534-ERR1719462) Canada's Michael Smith Genome Sciences Centre 3300018887 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -16.9554 -100.6911 271782536 566058 0 23 4 119 0.0 Metatranscriptome 3300034278 *Microbiome Permanent Draft Phytoplankton bloom bacterial communities from coast of New Jersey, USA Phytoplankton bloom bacterial communities from coast of New Jersey, USA - 40 meters Michigan State University 3300034278 Metatranscriptome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy No Yes learm1dr@cmich.edu Deric Learman No Environmental Aquatic Coastal Marine Unclassified phytoplankton bloom 37.8665611 -70.23155278 520588651 1627785 1236 751 2722 2305 0.0 Metatranscriptome 3300059572 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_27 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300059572 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 141669833 239435 237 45 651 224 Unrestricted 80.06 Metatranscriptome 3300008344 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy - AfterMoulding.RNAseq.exp1 University of Naples 3300008344 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Cheese 56536 198 14 0 132 5 0.0 Metatranscriptome 3300003327 *Microbiome Permanent Draft Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, California, USA Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-4-R (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003327 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes jsvander@ucdavis.edu Jean VanderGheynst No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass Ionic liquid and high solid enriched 38.5402 -121.75 55670928 94650 5 13 27 37 SRX2557344 Unrestricted 0.0 Metatranscriptome 3300016733 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011501AT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016733 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 235002426 510441 143 264 3103 4105 SRX3780723 Unrestricted 0.0 Metatranscriptome 3300030750 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E6_T_5 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030750 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 581364713 1989576 136 178 251 416 SRX3341606 Unrestricted 0.0 Metatranscriptome 3300012705 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES047 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012705 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 126705829 253992 120 98 571 2063 SRX3010813 Unrestricted 0.0 Metatranscriptome 3300037763 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - F18JunM (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037763 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4316 16.6833 180261066 381318 124 645 868 2195 SRX9164990 Unrestricted 20.68 Metatranscriptome 3300003548 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - N08B_MAR13 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003548 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 6018344 17782 4 0 60 14 SRX3330753 Unrestricted 0.0 Metatranscriptome 3300002335 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI - J_51min_Aerobic no depletion (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002335 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes tmcmahon@cae.wisc.edu, tmcmahon@engr.wisc.edu; tmcmahon@cae.wisc.edu Sludge Phage users, Katherine McMahon; Trina McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.078418 -89.386482 644727 2090 12 19 132 100 SRX2554560 Unrestricted 0.0 Metatranscriptome 3300051448 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T2_4 (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300051448 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 97104333 201607 66 28 186 113 Unrestricted 0.0 Metatranscriptome 3300030718 *Microbiome Permanent Draft Soil microbial communities from Risofladan, Vaasa, Finland Metatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - OX-1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030718 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes eva.hogfors-ronnholm@novia.fi Eva Hogfors-Ronnholm Yes Environmental Terrestrial Coastal area Soil Acid sulfate soil soil 63.0472 21.7116 103476584 223379 288 203 1625 907 SRX5356419 Unrestricted 52.41 Metatranscriptome 3300017495 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from English Channel in f/20 medium with seawater, no silicate, 18 C, 30 psu salinity and 325 ?mol photons light - Alexandrium tamarense CCMP 1771 (MMETSP0382) National Center for Genome Resources 3300017495 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Estuary marine 50.6 4.25 94657293 112965 0 10 0 10 0.0 Metatranscriptome 3300030837 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T27 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030837 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 35019465 64518 40 21 81 136 SRX5352483 Unrestricted 17.01 Metatranscriptome 3300009411 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_OS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009411 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes fmartin@nancy.inra.fr, francis.martin@inrae.fr Francis MARTIN, Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate/submediterranean forest 42.0 1.0 231486003 492964 453 232 3962 2842 SRX2998737 Unrestricted 0.0 Metatranscriptome 3300058802 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - Treefall.Jul19.R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300058802 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.5322 -110.7965 8-9 69570325 148573 5 1 107 1 Unrestricted 256.59 Metatranscriptome 3300051256 *Microbiome Permanent Draft Forest soil microbial communities from various locations in Germany Metatranscriptome of forest soil microbial communities from Schonbrunner Wald, Bavaria, Germany - BW_CO_036R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051256 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.904464 13.563778 67469639 176940 243 266 1415 1055 Unrestricted 111.66 Metatranscriptome 3300031103 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031103 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 56005899 109834 59 72 78 334 SRX5351935 Unrestricted 22.19 Metatranscriptome 3300011079 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 54 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011079 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 97528835 217540 217 672 17413 2712 Unrestricted 0.0 Metatranscriptome 3300050688 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae axenic culture microbial communities from LLNL, Livermore, California, USA - f14_d2_W_S23 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050688 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 21339470 24307 4 0 3 4 Restricted 200.73 Metatranscriptome 3300021861 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021861 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment sediment 41.1752 -78.4168 883238935 1983355 345 1810 13130 12091 SRX4010387 Unrestricted 0.0 Metatranscriptome 3300046174 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_2_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046174 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 29040045 45476 1 0 14 1 Restricted 237.53 Metatranscriptome 3300036430 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Omics15_030918 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036430 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 159102499 349986 552 83 1161 1588 SRX8834326 Unrestricted 34.0 Metatranscriptome 3300059626 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 173R_CD_T3_R4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059626 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 230454468 574834 392 311 1856 1729 Unrestricted 86.7 Metatranscriptome 3300007164 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Iron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_top_diel_T=3 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007164 Metatranscriptome Analysis megahit v. 0.2.0 No Yes binskeep@montana.edu, binskeep@montana.edu; jim.fredrickson@pnnl.gov William Inskeep, William P. Inskeep; Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Acidic Thermal springs 44.7315 -110.7113 34692653 80528 2556 14 4815 22 SRX2522151 Unrestricted 0.0 Metatranscriptome 3300021906 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-2M (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021906 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 100324439 196380 49 43 91 203 SRX5203085 Unrestricted 0.0 Metatranscriptome 3300006278 *Microbiome Permanent Draft Prairie soil microbial communities from Kansas, USA, after rainfall Prairie soil microbial communities from Kansas, USA, after rainfall - K02 Oregon State University 3300006278 Metatranscriptome Analysis VELVET 1.2.10, combine 23, 27, 31 released per JGI data release policy No Yes lzeglin@ksu.edu Lydia Zeglin No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.1038 -96.6133 1613950 9223 11 8 38 15 0.0 Metatranscriptome 3300030951 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E4_Q_5 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030951 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 578279025 2027282 329 529 709 1428 SRX3341205 Unrestricted 0.0 Metatranscriptome 3300048949 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 26 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048949 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 42.4305 -81.2062 23012522 55563 62 7 185 74 Restricted 32.53 Metatranscriptome 3300017108 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater and 400nM iron, 19 C, 35 psu salinity and 639 ?mol photons light - Thalassiosira weissflogii CCMP 1010 (MMETSP1406) National Center for Genome Resources 3300017108 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.0 -65.0 30843668 32064 1 4 1 12 0.0 Metatranscriptome 3300043289 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Metatranscriptome of coal bed microbial communities from the Powder River Basin, Montana, United States - T1YRFG11RNAD (Metagenome Metatranscriptome) (FastSelect) (version 2) DOE Joint Genome Institute (JGI) 3300043289 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Aquatic Groundwater Deep subsurface Coalbed methane well water coal bed water 45.4351 -106.3918 112423376 234335 4 11 124 15 Unrestricted 0.0 Metatranscriptome 3300017036 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in GSe medium with ammonium, 22 C, 32 psu salinity and 108 ?mol photons light - Pelagomonas calceolata CCMP 1756 (MMETSP0888) National Center for Genome Resources 3300017036 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 30.8333 -136.8333 26250866 29110 2 5 3 6 0.0 Metatranscriptome 3300030605 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE042SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030605 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr; fmartin@nancy.inra.fr Francis M. Martin; Francis M. MARTIN No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2937 -71.1771 268782941 604304 78 86 1663 503 SRX4391325 Unrestricted 0.0 Metatranscriptome 3300005475 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0300_B MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005475 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 10777031 31596 1961 4 4141 25 SRX2521670, SRX2521671 Unrestricted 0.0 Metatranscriptome 3300026566 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026566 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 247246833 522422 116 154 1208 1651 SRX4797115 Unrestricted 17.6 Metatranscriptome 3300052651 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Southern Region, Iceland - Sphagnum auriculatum 4_AUR_ICE (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052651 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.11379 -20.496 154219272 325099 144 77 382 382 Unrestricted 79.79 Metatranscriptome 3300036464 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0817U02 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300036464 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.039 167038576 370451 244 567 4691 1888 SRX9470118, SRX9470117, SRX9470116 Unrestricted 0.0 Metatranscriptome 3300048677 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Metatranscriptome of soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048677 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.3476 -119.2808 40874914 54446 12 0 28 5 Unrestricted 65.86 Metatranscriptome 3300016951 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of freshwater eukaryotic communities from unknown location in Standard Volvox Media, at 18 C and 355 ?mol photons light - Chlamydomonas leiostraca SAG 11-49 (MMETSP1391) National Center for Genome Resources 3300016951 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Freshwater Unclassified Freshwater 26186365 32463 4 1 1 1 0.0 Metatranscriptome 3300022210 *Microbiome Permanent Draft Characterization of microbial community from Mariana Back Arc Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Hafa_FS927_RNA_SIP 150_kmer Marine Biological Laboratory 3300022210 Metatranscriptome Analysis IDBA-UD 1.1.3 Trembath-Reichert et al. ?Active subseafloor microbial communities from Mariana back-arc venting fluids share metabolic strategies across different thermal niches and taxa?, ISMEJ 2019 No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Hydrothermal vent fluids 16.96175748 144.8691905 4349095 7460 204 0 569 0 0.0 Metatranscriptome 3300037754 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_OW2_C1_D4_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037754 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 42894207 83828 269 1133 2505 2739 SRX8890025 Unrestricted 193.28 Metatranscriptome 3300050685 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae culture inoculated with mixed bacterial community from LLNL, Livermore, California, USA - f7_d2_A_S13 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050685 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 28962321 41870 3 0 2 6 Restricted 123.71 Metatranscriptome 3300056918 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP12.2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056918 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 212277319 433543 19 28 126 182 Unrestricted 44.26 Metatranscriptome 3300010066 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_2_8_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010066 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 24709373 58151 230 583 24111 4837 Unrestricted 0.0 Metatranscriptome 3300005572 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0139 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005572 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 14.311 -26.0 63352589 202215 1210 1399 3740 4513 SRX3323615 Unrestricted 0.0 Metatranscriptome 3300012708 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES113 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012708 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 131370882 269321 78 229 539 5827 SRX3011048 Unrestricted 0.0 Metatranscriptome 3300002764 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS1_TP2_13H 3300002764 Metatranscriptome Analysis released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 660679 2221 108 3 64 10 0.0 Metatranscriptome 3300003545 *Microbiome Permanent Draft Serpentinite rock and fluid microbial communities from Tablelands Ophiolite (Newfoundland), Coast Range Ophiolite (California) and Ligurian Springs (Italy) Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - N08B_AUG13 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003545 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes mattoschrenk@gmail.com Matthew Schrenk No Environmental Terrestrial Unclassified Deep subsurface Unclassified Serpentinite rock and fluid 38.8739528 -122.4391613 3199366 7679 5 6 49 47 SRX3330943 Unrestricted 0.0 Metatranscriptome 3300002338 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI - N_134min_Aerobic no depletion (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002338 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes tmcmahon@cae.wisc.edu, tmcmahon@engr.wisc.edu; tmcmahon@cae.wisc.edu Sludge Phage users, Katherine McMahon; Trina McMahon Yes 20148930 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.078418 -89.386482 875203 2869 19 28 165 129 SRX3323124 Unrestricted 0.0 Metatranscriptome 3300049120 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 84 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049120 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.9364 -81.6542 7060106 13971 11 4 33 35 Restricted 53.73 Metatranscriptome 3300030715 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - AG5_1295_SCM (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030715 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 70.5467 -122.9077 81144599 163613 204 39 256 921 SRX5651173 Unrestricted 19.24 Metatranscriptome 3300030608 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Dnb4 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030608 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 513591354 1122902 228 215 2094 1163 SRX4547304 Unrestricted 0.0 Metatranscriptome 3300016750 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Metatranscriptome of peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016750 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 688118169 1527959 177 127 10347 1412 SRX3204064 Unrestricted 0.0 Metatranscriptome 3300008772 *Microbiome Permanent Draft Microbial communities of mouse gut induced with colitis from Vienna, Austria Microbial communities of mouse gut induced with colitis from Vienna, Austria - 9975_ATGCT University of Vienna 3300008772 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Stomach Digestive system Forestomach Foregut of mice 25144285 101232 188 2 2176 41 SRX326441 0.0 Metatranscriptome 3300048701 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Metatranscriptome of beaver cecum microbial communities from Maple Ridge, British Columbia, Canada - B2_CE3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048701 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Cecum cecum 49.2552 -122.5085 197402272 385816 2 16 173 65 Restricted 63.32 Metatranscriptome 3300006682 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP0325 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006682 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -9.13 -30.19 37262238 109136 894 1830 2436 3919 SRX3299035 Unrestricted 0.0 Metatranscriptome 3300016718 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Gulf of Mexico in L1 medium, 20 C, 21 psu salinity and 455 ?mol photons light - Leptocylindrus danicus CCMP 1856 (MMETSP1362) National Center for Genome Resources 3300016718 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 25.0 -90.0 26393503 30653 14 1 25 1 0.0 Metatranscriptome 3300003158 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_3 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003158 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes mkfstone@berkeley.edu, nuccio1@llnl.gov; mkfstone@berkeley.edu Mary Firestone, Erin Nuccio; Mary Firestone No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.97364 -123.117453 3483159 6467 36 47 182 527 SRX2557995 Unrestricted 0.0 Metatranscriptome 3300031493 *Microbiome Permanent Draft Soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_R5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031493 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thb15@psu.edu Terrence Bell No Engineered Artificial ecosystem Surface biofilm Soil microcosm Unclassified soil 40.7997 -77.8629 58590659 124267 134 28 730 391 SRX5812396 Unrestricted 142.63 Metatranscriptome 3300018624 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from deep sea water colum in Eastern Mediterranean Sea Metatranscriptome of marine microbial communities from deep sea water colum in Eastern Mediterranean Sea - KM3-5 Woods Hole Oceanographic Institution 3300018624 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 36.29 15.39 19263251 40436 318 95 839 181 0.0 Metatranscriptome 3300006275 *Microbiome Permanent Draft Prairie soil microbial communities from Kansas, USA, after rainfall Prairie soil microbial communities from Kansas, USA, after rainfall - K08 Oregon State University 3300006275 Metatranscriptome Analysis VELVET 1.2.10, combine 23, 27, 31 released per JGI data release policy No Yes lzeglin@ksu.edu Lydia Zeglin No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.1038 -96.6133 875594 5229 44 7 113 20 0.0 Metatranscriptome 3300031016 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031016 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 59.9992 10.7901 10785201 19954 115 296 410 1286 SRX5351363 Unrestricted 0.0 Metatranscriptome 3300011020 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 78 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011020 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 11173375 28748 17 62 1637 409 Unrestricted 0.0 Metatranscriptome 3300016837 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Sargasso Sea in f/2 medium with seawater, no silicate, 21 C, 35 psu salinity and 452 ?mol photons light - Pycnococcus sp. CCMP1998 (MMETSP1085) National Center for Genome Resources 3300016837 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 20.7722 -63.0368 12858434 12556 29 6 44 13 0.0 Metatranscriptome 3300017592 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 18 C, 32 psu salinity and 534 ?mol photons light - Chaetoceros affinis CCMP 159 (MMETSP0092) (SRX549065-SRR1294451) National Center for Genome Resources 3300017592 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 4644593 9287 4 5 9 5 0.0 Metatranscriptome 3300037867 *Microbiome Permanent Draft Rumen fluid microbial communities from dairy cows in UC Davis, California, USA Metatranscriptome of rumen microbial communities from dairy cows in UC Davis, California, USA - UCD_Rumen_Seaweed_2555 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300037867 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bmroque@ucdavis.edu Breanna Roque No Host-associated Mammals Stomach Digestive system Rumen fluid rumen fluid 38.5368 -121.7595 39722234 86487 1 34 132 81 Unrestricted 0.0 Metatranscriptome 3300017105 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in L1 medium with seawater, 2 C, 33 psu salinity and 581 ?mol photons light - Chaetoceros dichaeta CCMP 1751 (MMETSP1447) National Center for Genome Resources 3300017105 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -49.9 11.55 23790345 31993 8 6 13 12 0.0 Metatranscriptome 3300034770 *Microbiome Permanent Draft Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S17 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034770 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes colin.averill@usys.ethz.ch Colin Averill No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 36.0 -78.0 27623023 47393 6 14 52 99 SRX7586703 Unrestricted 702.57 Metatranscriptome 3300036588 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Metatranscriptome of soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_Dec_plot3_rep3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036588 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6591 -80.6279 226385277 517683 361 266 4423 1626 SRX8186921 Unrestricted 30.19 Metatranscriptome 3300031686 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRA6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031686 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 59.997 10.7902 55200226 90742 21 18 27 111 SRX5808069 Unrestricted 27.91 Metatranscriptome 3300006378 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006378 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 146891669 431366 14167 12750 47839 38606 SRX3196376 Unrestricted 0.0 Metatranscriptome 3300042405 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_117 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042405 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 78540393 176882 400 709 3329 4215 Unrestricted 37.08 Metatranscriptome 3300059475 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of lake water microbial communities from Sandhills, Nebraska, United States - NSL_Smith_2019 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059475 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Lake Freshwater Unclassified Freshwater 41.78581 -102.52354 108474043 245073 86 54 355 254 Unrestricted 48.77 Metatranscriptome 3300046433 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_31_Fire (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046433 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1607 -81.362 32077461 76077 147 138 1054 686 Unrestricted 63.09 Metatranscriptome 3300028094 *Microbiome Permanent Draft Enriched cultures of PCE-dechlorinating microbial communities from Ithaca, New York, USA Metatranscriptome of enriched cultures of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.S36 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028094 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes rer26@cornell.edu Ruth Richardson No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified defined medium 42.4447 -76.485 52297171 85115 7 3 185 2 SRX5087125 Unrestricted 135.16 Metatranscriptome 3300030966 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB4 EcM (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030966 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7585 6.3578 460194838 1370690 7557 1685 14762 5219 SRX3350119 Unrestricted 0.0 Metatranscriptome 3300049535 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049535 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 65960922 162365 158 126 1049 828 Unrestricted 160.09 Metatranscriptome 3300018783 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_039 - TARA_N000000011 (ERX1782442-ERR1712209) Canada's Michael Smith Genome Sciences Centre 3300018783 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 18.5667 66.522 160363773 387851 16 18 91 350 0.0 Metatranscriptome 3300024852 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Yuk_RepC_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024852 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 191306893 404577 46 157 1032 1197 SRX4547789 Unrestricted 29.49 Metatranscriptome 3300041559 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Fecal microbial community from a dairy cow Lincoln, Canterbury, New Zealand - F17_355 MetaT AgResearch, New Zealand, Mosgeil 3300041559 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Large intestine Digestive system Fecal Bovine feces -43.648506 172.343549 21791061 49277 459 282 1841 330 0.0 Metatranscriptome 3300028724 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Gln1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028724 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 39764692 77420 8 6 348 48 SRX5356132 Unrestricted 98.0 Metatranscriptome 3300004482 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 24 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004482 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 41200736 129771 21138 2120 49430 4522 Unrestricted 0.0 Metatranscriptome 3300004326 *Microbiome Permanent Draft Metatranscriptomics studies in sediment microbial communities from the mangroves in Sao Paulo, Brazil Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC2A 3300004326 Metatranscriptome Analysis IDBA released by JGI data releasing policy No Yes luc.g.cabral@gmail.com Luc?lia Cabral, Lucelia Cabral No Environmental Aquatic Intertidal zone Marine Mangrove sediment Mangrove sediment -23.8553 -46.1394 26770101 78682 1255 648 4729 1795 0.0 Metatranscriptome 3300022715 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022715 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes jlb@umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 155885838 376565 143 412 2891 3074 SRX4408987 Unrestricted 0.0 Metatranscriptome 3300031091 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031091 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92029456 -106.94875775 639091002 1515295 489 328 2626 2012 SRX8134974 Unrestricted 21.43 Metatranscriptome 3300037622 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_M1_C1_D4_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037622 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 60473153 126529 418 1128 4744 3713 SRX9382811 Unrestricted 156.69 Metatranscriptome 3300040753 *Microbiome Finished Lab enriched marine microbial communities from the Bohai Gulf, China Lab enriched marine microbial communities from the Bohai Gulf, China - CNH Hebei Normal University of Science &Technology 3300040753 Metatranscriptome Analysis Trinity v. 2.4.0 released by Si Li No Yes jackeikee@aliyun.com Si Li No Environmental Aquatic Gulf Marine Unclassified Marine 38.26 118.24 43371898 81158 8 68 50 308 0.0 Metatranscriptome 3300046599 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-35 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046599 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4199 -64.1151 111536818 264602 554 19 515 194 Unrestricted 16.97 Metatranscriptome 3300034653 *Microbiome Permanent Draft Peat soil microbial communities from wetland fen in Alaska, United States Metatranscriptome of peat soil microbial communities from wetland fen in Alaska, United States - Frozen_pond_03R_16 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034653 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes swr38@rutgers.edu; barkay@aesop.rutgers.edu Spencer W. Roth; Tamar Barkay No Environmental Terrestrial Wetlands Soil Unclassified peat soil 64.9141 -147.8344 343890014 724230 233 103 1538 521 SRX7525245 Unrestricted 39.75 Metatranscriptome 3300035353 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0819U56 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035353 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.039 121880100 258413 244 167 6879 422 SRX8237471 Unrestricted 47.48 Metatranscriptome 3300008926 *Microbiome Permanent Draft Microbial communities from freshwater in the western basin of Lake Erie, USA Microbial communities from freshwater in the western basin of Lake Erie, USA - 973-2 University of Tennessee 3300008926 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Unclassified Lake water 41.79 -83.33 7010967 13143 24 27 214 374 0.0 Metatranscriptome 3300019000 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_082 - TARA_N000001394 (ERX1782320-ERR1712129) Canada's Michael Smith Genome Sciences Centre 3300019000 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -47.1966 -58.2349 387831080 972579 118 32 308 445 0.0 Metatranscriptome 3300017173 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in ESM medium, at 20 C, 35 psu salinity and 648 ?mol photons light - Norrisiella sphaerica BC52 (MMETSP0113_2) National Center for Genome Resources 3300017173 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 29579284 34736 8 8 16 15 0.0 Metatranscriptome 3300012877 *Microbiome Permanent Draft Synthetic bacterial communities of pure cultures isolated from sediment of Lake Washington, USA Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under high oxygen condition - MT methane_oxidizing 14strains_1hour-a (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012877 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes milachis@u.washington.edu Ludmila Chistoserdova No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 47.6553 -122.3035 33236844 63825 2 0 521 6 SRX3015567 Unrestricted 0.0 Metatranscriptome 3300011295 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S17 O2min_A metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011295 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 46237454 111241 26 30 5605 1468 SRX3787209 Unrestricted 0.0 Metatranscriptome 3300057248 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of biofilm microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Creek_T4_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300057248 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Biofilm 44.7986 -110.7207 77896016 117337 23 6 259 59 Unrestricted 0.0 Metatranscriptome 3300004588 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 13_LOW5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004588 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 48958626 129972 2150 45 5780 134 SRX2779755 Unrestricted 0.0 Metatranscriptome 3300018752 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_070 - TARA_N000000662 (ERX1789652-ERR1719340) Canada's Michael Smith Genome Sciences Centre 3300018752 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -20.3943 -3.2085 177977842 381762 2 11 2 116 0.0 Metatranscriptome 3300034275 *Microbiome Permanent Draft FORHOT Natural soil warming experiment in Iceland Soil microbial communities from grassland in Hveragerdi, Iceland - GN1-A University of Vienna 3300034275 Metatranscriptome Analysis rnaSPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes craig.herbold@microbial-ecology.net Craig Herbold No Environmental Terrestrial Unclassified Soil Grasslands Soil 64.025 -21.205 2205824078 9483555 423147 41690 2083943 52005 0.0 Metatranscriptome 3300032429 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day2_9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032429 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 58729624 94900 8 1 31 5 SRX6857174 Unrestricted 109.26 Metatranscriptome 3300018769 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_135 - TARA_N000002195 (ERX1789526-ERR1719205) Canada's Michael Smith Genome Sciences Centre 3300018769 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 32.9909 -121.8522 156267254 369364 9 29 22 383 0.0 Metatranscriptome 3300036122 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of sediment microbial communities from Prado wetlands, California, USA - CSM_Prado_Oct18_PM1_2.5z2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036122 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 50663056 104205 130 251 1933 1026 SRX8771073 Unrestricted 36.49 Metatranscriptome 3300030801 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E4_X_5 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030801 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 252957658 871250 616 486 1210 1437 SRX3341224 Unrestricted 0.0 Metatranscriptome 3300021856 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Metatranscriptome of freshwater microbial communities from post-fracked creek in Pennsylvania, United States - LL:C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021856 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Unclassified freshwater 41.1809 -78.4726 287257447 613742 332 1156 6538 18760 SRX4009983 Unrestricted 0.0 Metatranscriptome 3300015246 *Microbiome Permanent Draft Seawater microbial communities from hydrothermal vent in East China Sea, Taiwan, China Seawater microbial communities from hydrothermal vent in East China Sea, Taiwan, China - gui-2014 bottom metaT BGI Tech Solutions Co., Ltd. 3300015246 Metatranscriptome Analysis Trinty released by JGI data releasing policy No Yes zhanglianbao425@outlook.com lin zhang No Environmental Aquatic Unclassified Thermal springs Unclassified seawater 25.0 128.0 20613247 50273 38 255 243 1145 0.0 Metatranscriptome 3300051261 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_149 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051261 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 102079138 262743 281 208 2199 1433 Unrestricted 70.33 Metatranscriptome 3300046415 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_24N_Control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046415 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1793 -81.3604 27845437 64300 315 240 1999 1308 Unrestricted 145.55 Metatranscriptome 3300031073 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031073 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 49169257 93509 36 22 44 141 SRX5794321 Unrestricted 16.82 Metatranscriptome 3300035367 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Metatranscriptome of Bradyrhizobium sp. W culture communities from SDSU, California, USA - Exp#2 BR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035367 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Engineered Lab culture Bacteria Culture media Unclassified defined medium 32.7717 -117.0735 23660773 29761 2 0 14 2 SRX8293408 Unrestricted 953.94 Metatranscriptome 3300011109 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 18 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011109 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 68779719 160884 189 1040 9595 2322 Unrestricted 0.0 Metatranscriptome 3300034667 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034667 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 440040760 1035667 217 1113 5328 5668 SRX7520251 Unrestricted 19.82 Metatranscriptome 3300041283 *Microbiome Permanent Draft Diffuse flow microbial communities from hydrothermal vent near Loihi Seamount, Hawaii, USA Diffuse flow microbial communities from hydrothermal vent near Loihi Seamount, Hawaii, USA - MH3012C8 Marine Biological Laboratory 3300041283 Metatranscriptome Analysis IDBA-UD v. 1.1.3 released by JGI data releasing policy No Yes asmith@simons-rock.edu Amy Smith No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse Flow 19.42 -155.28 4205596 5647 0 0 0 0 0.0 Metatranscriptome 3300052334 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_8B2_100318_0845 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052334 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@dbi.udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 37589960 93362 283 46 505 254 Unrestricted 309.03 Metatranscriptome 3300052768 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_76 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052768 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 266297349 681076 244 199 1323 1088 Unrestricted 39.64 Metatranscriptome 3300030942 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZI5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030942 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 49.0448 13.618 10715196 22785 109 173 698 959 SRX5337867 Unrestricted 0.0 Metatranscriptome 3300008422 *Microbiome Permanent Draft Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy Microbial communities during the manufacturing and ripening process of Caciocavallo cheese in Italy - t10.CR.RNAseq.exp1 University of Naples 3300008422 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Engineered Food production Unclassified Dairy products Unclassified Cheese 25825 95 14 0 67 0 0.0 Metatranscriptome 3300008386 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34702 J. Craig Venter Institute (JCVI) 3300008386 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 61187 274 0 0 2 0 0.0 Metatranscriptome 3300016691 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES124 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016691 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Epilimnion/Euphotic zone freshwater 46.041 -89.686 104749942 219108 141 131 1823 3794 SRX3780232 Unrestricted 0.0 Metatranscriptome 3300026423 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 39R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026423 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 149889312 239832 73 11 102 186 SRX4474450 Unrestricted 40.21 Metatranscriptome 3300028118 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepB_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028118 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 14604417 31783 44 72 418 693 SRX5245748 Unrestricted 19.86 Metatranscriptome 3300048961 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 42+46 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048961 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.6659 -82.0791 12071096 24513 56 52 122 289 Restricted 77.03 Metatranscriptome 3300003612 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI073_165m_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003612 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 24764652 53094 263 19 946 140 Unrestricted 0.0 Metatranscriptome 3300012968 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012968 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 39.2637 -76.0017 274568320 595016 103 452 2283 8854 SRX3007430 Unrestricted 0.0 Metatranscriptome 3300042416 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_NB_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042416 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 42306851 53418 1 0 12 1 Unrestricted 295.31 Metatranscriptome 3300018884 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_068 - TARA_N000000709 (ERX1789629-ERR1719186) Canada's Michael Smith Genome Sciences Centre 3300018884 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -31.0507 4.6603 285708932 560290 2 43 5 124 0.0 Metatranscriptome 3300020068 *Microbiome Permanent Draft Soil and sediment microbial communities from the East River, CO, USA Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300020068 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Riparian zone Soil Unclassified Groundwater sediment 38.9195 -106.9496 325802263 734324 458 1118 57022 14924 SRX3940317 Unrestricted 0.0 Metatranscriptome 3300004620 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 49 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004620 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 162533157 501764 9942 4061 36716 9242 Unrestricted 0.0 Metatranscriptome 3300004521 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 75_LOW10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004521 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 16012003 39321 83 15 334 30 SRX2780159 Unrestricted 0.0 Metatranscriptome 3300017312 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Southern Kattegat in F/2 medium with seawater, 15 C, 33 psu salinity and 741 ?mol photons light - Heterocapsa rotundata SCCAP K-0483 (MMETSP0503) National Center for Genome Resources 3300017312 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 56.0 11.0 43306217 57389 1 3 1 2 SRX551217 0.0 Metatranscriptome 3300021849 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States - R1037 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021849 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 46.183 -123.18 51752475 116445 462 799 2755 6296 SRX4015407 Unrestricted 0.0 Metatranscriptome 3300017078 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater and 400nM iron w/o nitrate, 14 C, 35 psu salinity and 444 ?mol photons light - Thalassiosira weissflogii CCMP 1010 (MMETSP0901_2) National Center for Genome Resources 3300017078 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.0 -65.0 31412145 31054 1 6 2 11 0.0 Metatranscriptome 3300037594 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Metatranscriptome of lab enriched marine microbial communities from Marineland, Florida, USA - SWP_R3_TP1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037594 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6475 -82.3464 179295149 374879 220 60 568 403 SRX9145981 Unrestricted 107.62 Metatranscriptome 3300030568 *Microbiome Permanent Draft Metatranscriptome of decayed wood fungal communities from Pinus contorta in National Forests from Montana, United States Metatranscriptome of decayed wood fungal communities from Pinus contorta in Tenderfoot Creek Experimental Forest, Montana, United States - TCEF3-1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030568 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes dcullen@wisc.edu Daniel Cullen No Host-associated Plants Stem Phyllosphere Wood decay decayed wood 46.9239 -110.8719 211050975 456992 52 13 141 111 SRX4804583 Unrestricted 0.0 Metatranscriptome 3300019221 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA - AD_UKC048_MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019221 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 41.12 -87.64 188974262 398902 141 410 7908 9738 SRX4809094 Unrestricted 0.0 Metatranscriptome 3300021277 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.487 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021277 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.302 -123.036 42793975 101342 442 1334 4104 8749 SRX4017418 Unrestricted 0.0 Metatranscriptome 3300017191 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater and 4nM iron, 19 C, 35 psu salinity and 139 ?mol photons light - Thalassiosira weissflogii CCMP 1010 (MMETSP0899_2) National Center for Genome Resources 3300017191 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.0 -65.0 33481863 35198 3 1 5 1 0.0 Metatranscriptome 3300006236 *Microbiome Permanent Draft Marine sediment microbial communities from different distances from oil contamination, Gulf of Mexico Marine sediment microbial communities, 0.6 km from oil contamination, elevated hydrocarbon, Gulf of Mexico- BC350 Yale Center for Genome Analysis 3300006236 Metatranscriptome Analysis idba_tran released per JGI data release policy No Yes phu@lbl.gov Ping Hu No Environmental Aquatic Oceanic Marine Oil-contaminated sediment marine 28.3 -88.2 24269647 52012 2256 1927 13608 4096 0.0 Metatranscriptome 3300046292 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_5_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046292 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 107136908 170931 1 0 34 0 Restricted 111.59 Metatranscriptome 3300031380 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_L6_4mM_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031380 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 12493080 20962 0 0 1 4 SRX5783473 Unrestricted 40.82 Metatranscriptome 3300004467 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 75 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004467 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 75495632 242045 5232 1682 16523 4098 Unrestricted 0.0 Metatranscriptome 3300009727 *Microbiome Permanent Draft Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling - T10-HLNO3 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009727 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes milachis@u.washington.edu Ludmila Chistoserdova No Engineered Modeled Plant nodule Simulated communities (microbial mixture) Unclassified Methane-oxidizing 47.6193 -122.2449 38903715 74963 1 0 359 10 SRX2525436 Unrestricted 0.0 Metatranscriptome 3300013073 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Organic Plus compost microbial communities from Emeryville, California, USA - RNA 5th pass 37_C Kraft OP (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013073 Metatranscriptome Analysis megahit v. 1.0.6 No Yes jmgladden@lbl.gov John Gladden No Environmental, Engineered Terrestrial, Solid waste Composting Soil, Mixed feedstock Commercial compost compost 37.83 -122.29 66962496 138794 3 289 99 473 SRX4809044 Unrestricted 0.0 Metatranscriptome 3300052395 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_216 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052395 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 136519940 336760 185 177 998 1062 Unrestricted 77.21 Metatranscriptome 3300046177 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH10_2_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046177 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 53782826 97952 12 56 193 305 Restricted 159.03 Metatranscriptome 3300000827 *Microbiome Permanent Draft Soil microbial communities from four geographically distinct crusts in the Colorado Plateau and Sonoran desert Soil microbial communities from Moab, Utah, sample - Soil Crust Prior wet up (biological replicate B) 0B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300000827 Metatranscriptome Analysis No Yes elbrodie@lbl.gov, ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Desert Soil Unclassified Soil 38.714694 -109.692944 141177646 478901 55 239 371 819 SRX3311666 Unrestricted 0.0 Metatranscriptome 3300018909 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_025 - TARA_A100000402 (ERX1782377-ERR1712208) Canada's Michael Smith Genome Sciences Centre 3300018909 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.2143 19.406 391488071 733416 1 33 9 183 0.0 Metatranscriptome 3300042491 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_DW_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042491 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 50406529 69047 0 0 0 0 Unrestricted 283.63 Metatranscriptome 3300055150 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP2.2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055150 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 174139913 351088 33 50 244 292 Unrestricted 76.59 Metatranscriptome 3300061832 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 58_cerealrye_3_T5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061832 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 81665018 209924 178 137 1224 981 Unrestricted 97.08 Metatranscriptome 3300026445 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0933-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026445 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 189885166 313680 9 11 12 76 SRX4796404 Unrestricted 67.82 Metatranscriptome 3300035554 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Antarctic Ocean - DFB2_10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035554 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified Seawater -46.5954 142.0314 424978637 887585 900 84 1793 1539 SRX8226811 Unrestricted 15.59 Metatranscriptome 3300016898 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in NEPC medium with nocodazole, at 20 C, 30 psu salinity and 748 ?mol photons light - Amphiprora sp. CCMP467 (MMETSP0727) National Center for Genome Resources 3300016898 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 25518667 28794 7 8 10 8 0.0 Metatranscriptome 3300021192 *Microbiome Permanent Draft Multi-omic termite study Termite gut microbial communities from nest - French Guiana - 5_4 mRNA SA University of Luxembourg 3300021192 Metatranscriptome Analysis CLC Genomics Workbench Version 9.5.2 released by JGI data releasing policy No Yes martyna.marynowska@list.lu Martyna Marynowska No Host-associated Arthropoda: Insects Gut Digestive system Unclassified termite gut 5.06224 -53.047407 41858817 162810 0 10 9 42 0.0 Metatranscriptome 3300030834 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLA5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030834 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 59.9989 10.7903 13934124 26168 174 350 705 1965 SRX5351349 Unrestricted 0.0 Metatranscriptome 3300031826 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLI3 metaT (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300031826 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified Plant litter 49.0431 13.617 29508652 64308 24 369 422 1743 SRX5222548, SRX3937007 Unrestricted 0.0 Metatranscriptome 3300017299 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from northern Puget Sound, Washington in Ciliate medium, 15 C, 30 psu salinity and 405 ?mol photons light - Strombidinopsis acuminata SPMC142 (MMETSP0126) National Center for Genome Resources 3300017299 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 48.608 -122.769 56031307 94736 52 21 88 31 SRX551220 0.0 Metatranscriptome 3300031005 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E7_R_0.2 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031005 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 272319631 792452 1131 811 2528 2094 SRX3341704 Unrestricted 0.0 Metatranscriptome 3300019129 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_131 - TARA_N000002352 (ERX1782251-ERR1711975) Canada's Michael Smith Genome Sciences Centre 3300019129 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 22.7598 -157.9568 145503877 337696 159 65 697 990 0.0 Metatranscriptome 3300017116 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, at -2 C, 35 psu salinity and 559 ?mol photons light - Thalassiosira antarctica CCMP 982 (MMETSP0902) National Center for Genome Resources 3300017116 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 34189197 43939 15 1 27 2 0.0 Metatranscriptome 3300018592 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_004 - TARA_X000000325 (ERX1782094-ERR1712047) Canada's Michael Smith Genome Sciences Centre 3300018592 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 36.5533 -6.5669 59963876 130125 12 27 73 205 0.0 Metatranscriptome 3300021950 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-118M (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021950 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 182132404 333116 96 103 169 348 SRX5295541 Unrestricted 0.0 Metatranscriptome 3300023688 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRE1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023688 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Unclassified Roots Unclassified roots 49.043 13.6183 29789940 44672 14 22 162 155 SRX4454953 Unrestricted 31.21 Metatranscriptome 3300046759 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_94_Fire (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046759 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1371 -81.365 53569194 126074 443 249 1636 1277 Unrestricted 110.17 Metatranscriptome 3300030860 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Litter GP-1A (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030860 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dcullen@wisc.edu; francis.martin@inrae.fr Daniel Cullen; Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 45.7544 -113.9094 1057483908 2874852 1202 286 2118 656 SRX3343221 Unrestricted 0.0 Metatranscriptome 3300028076 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 10R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028076 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 65468115 149329 176 37 317 604 SRX5172038 Unrestricted 21.39 Metatranscriptome 3300019061 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_122 - TARA_N000001941 (ERX1782221-ERR1711986) Canada's Michael Smith Genome Sciences Centre 3300019061 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -9.006 -139.206 2934876 7214 1 6 8 60 0.0 Metatranscriptome 3300050579 *Microbiome Permanent Draft Phycosphere-associated microbial communities from algal ponds Metatranscriptome of microalgae axenic culture microbial communities from LLNL, Livermore, California, USA - f12_d2_W_S21 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050579 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mayali1@llnl.gov Xavier Mayali No Host-associated Algae Unclassified Diatoms Unclassified Microalgae culture 37.68851448 -121.7063408 21126184 25113 4 0 2 7 Restricted 310.3 Metatranscriptome 3300030895 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T22 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030895 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 46340876 85411 46 21 93 214 SRX5794463 Unrestricted 19.51 Metatranscriptome 3300007244 *Microbiome Permanent Draft Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 6/11/14 C2 RNA (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007244 Metatranscriptome Analysis megahit v. 0.2.0 No Yes ebyoung@uwm.edu Erica Young, Erica B. Young No Engineered WWTP Algae cultivation tank Effluent Unclassified Wastewater effluent 43.023 -87.895 449363976 1146437 1400 1853 3605 6666 SRX5628640 Unrestricted 0.0 Metatranscriptome 3300002863 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Avena fatua rhizosphere microbial communities - H2_Bulk_Litter_12 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002863 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes mkfstone@berkeley.edu, nuccio1@llnl.gov; mkfstone@berkeley.edu Mary Firestone, Erin Nuccio; Mary Firestone No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.97364 -123.117453 4738910 11135 105 77 205 813 SRX2558070 Unrestricted 0.0 Metatranscriptome 3300008820 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of annulated tree boas from Steinhart Aquarium in San Francisco, USA - CAS04_Brain University of California, San Francisco 3300008820 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Brain Nervous system Unclassified Brain 7600386 21009 0 0 0 0 SRX170632 0.0 Metatranscriptome 3300018498 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_047 - TARA_G000000124 (ERX1782113-ERR1711919) Canada's Michael Smith Genome Sciences Centre 3300018498 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -2.0465 72.1568 1764614 4306 0 4 9 92 0.0 Metatranscriptome 3300035576 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - 16D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035576 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.423 16.6683 117575895 242332 197 294 2478 1260 SRX8209310 Unrestricted 46.96 Metatranscriptome 3300010175 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1500_B MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010175 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 16014942 39054 2062 0 5108 11 SRX2521672, SRX2521673 Unrestricted 0.0 Metatranscriptome 3300004539 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 43_HOW7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004539 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 32823533 76855 387 688 1190 1553 SRX2780056 Unrestricted 0.0 Metatranscriptome 3300047600 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_7_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047600 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 40487777 76212 2 0 16 1 Restricted 174.12 Metatranscriptome 3300021896 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S13 C1 B13 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021896 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 42.340079 -12.879929 107921780 194442 118 58 248 201 SRX5204346 Unrestricted 0.0 Metatranscriptome 3300049554 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J25_A_7_control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049554 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 37991069 91827 75 74 337 370 Unrestricted 473.78 Metatranscriptome 3300016916 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in NEPC medium w/o silicate, at 20 C, 30 psu salinity and 483 ?mol photons light - Chaetoceros neogracile CCMP 1317 (MMETSP0752) National Center for Genome Resources 3300016916 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 31399909 30462 21 1 30 2 0.0 Metatranscriptome 3300037678 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen9, Rep 1, Penicillin and Streptomycin (Eukaryote Community Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300037678 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 36988230 34644 4 0 10 3 SRX8381230, SRX8381229 Unrestricted 0.0 Metatranscriptome 3300004493 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 81_HOW10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004493 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 16530736 35755 211 145 755 438 SRX2780161 Unrestricted 0.0 Metatranscriptome 3300010979 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 corn stover (Eukaryote Community Metatranscriptome) (version 5) (version 4) DOE Joint Genome Institute (JGI) 3300010979 Metatranscriptome Analysis rnaSPAdes v. 0.1.1 No Yes mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 40.102108 -88.227299 535297083 947186 75 354 252 641 SRX5780594 Unrestricted 0.0 Metatranscriptome 3300019239 *Microbiome Permanent Draft Anaerobic biogas reactor microbial communites from Washington, USA Anaerobic biogas reactor microbial communites from Seattle, Washington, USA - Biogas_R2-A RNA time zero (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019239 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dacb@uw.edu David Beck No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic biogas reactor 47.6525 -122.3049 207073871 425511 44 359 18191 2761 SRX3905024 Unrestricted 0.0 Metatranscriptome 3300018792 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_082 - TARA_N000001398 (ERX1782120-ERR1711892) Canada's Michael Smith Genome Sciences Centre 3300018792 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -47.1899 -58.2724 254280243 430088 31 25 51 148 0.0 Metatranscriptome 3300013051 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched backyard soil microbial communities from Emeryville, California, USA - RNA 3rd pass 30_C BE-Lig BY (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013051 Metatranscriptome Analysis megahit v. 1.0.6 No Yes jmgladden@lbl.gov John Gladden No Environmental Terrestrial Unclassified Soil Unclassified soil 37.83 -122.29 36112040 64040 13 70 78 2290 SRX3901975 Unrestricted 0.0 Metatranscriptome 3300051849 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_4A1_100218_0717 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051849 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 280960416 646167 619 182 1794 979 Unrestricted 138.79 Metatranscriptome 3300022360 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.763 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300022360 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.302 -123.036 17427178 36744 516 1067 4930 3188 SRX4018590 Unrestricted 0.0 Metatranscriptome 3300008847 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_2927 Massachusetts Institute of Technology 3300008847 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 1305521 4000 2 4 233 439 0.0 Metatranscriptome 3300031051 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Humus C1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031051 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr; ake.olson@slu.se Francis M. Martin; Ake Olson No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 60.97 15.87 283026900 709728 932 220 2200 735 SRX3345043 Unrestricted 0.0 Metatranscriptome 3300018609 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_082 - TARA_N000001400 (ERX1782449-ERR1712128) Canada's Michael Smith Genome Sciences Centre 3300018609 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -47.2116 -58.0266 86321471 164494 16 10 33 111 0.0 Metatranscriptome 3300046100 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-122 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046100 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4479 -64.2031 95807659 229757 742 45 1300 433 Unrestricted 18.16 Metatranscriptome 3300041902 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaT_extra_run AgResearch, New Zealand, Mosgeil 3300041902 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Rhizoplane Roots Dairy farm pasture -43.648506 172.343549 611644 1085 54 99 146 153 0.0 Metatranscriptome 3300032843 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_26JUN2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032843 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3951 -85.3736 78182579 135562 61 48 103 321 SRX7519620 Unrestricted 90.14 Metatranscriptome 3300036178 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of sediment microbial communities from Prado wetlands, California, USA - CSM_Prado_Oct18_PM1_0.5z2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036178 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 56613282 120107 82 157 2128 656 SRX8742863 Unrestricted 35.38 Metatranscriptome 3300046562 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - P3-R2-A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046562 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3562 19.0477 153358812 342922 155 151 679 598 Unrestricted 54.61 Metatranscriptome 3300008320 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.1ln.4.15dpc CCME-COLORADO 3300008320 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 955465 4287 31 2 507 5 0.0 Metatranscriptome 3300017287 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Bass Strait in f/2 medium, 13 C, 21 psu salinity and 690 ?mol photons light - Grammatophora oceanica CCMP 410 (MMETSP0009_2) National Center for Genome Resources 3300017287 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -37.86 144.93 34596533 49801 16 7 29 5 0.0 Metatranscriptome 3300037735 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_OW2_C1_D3_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037735 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 62453606 115955 282 1574 2155 3767 SRX8889744 Unrestricted 169.92 Metatranscriptome 3300036414 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of sediment microbial communities from Prado wetlands, California, USA - CSM_Prado_Oct18_PM3_2.5z2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036414 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Sediment sediment 33.919 -117.6176 111866549 224070 67 193 674 921 SRX8771074 Unrestricted 32.75 Metatranscriptome 3300016765 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in K medium with artificial sea water, no silica, 21 C, 35 psu salinity and 360 ?mol photons light - Prasinoderma coloniale CCMP 1413 (MMETSP0806_2) National Center for Genome Resources 3300016765 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 35.0 -70.0 13949924 13517 33 18 41 46 0.0 Metatranscriptome 3300017552 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in f/2 medium with seawater, 14 C, 36 psu salinity and 110 ?mol photons light - Ditylum brightwellii GSO103 (MMETSP1002) (SRX549032-SRR1294418) National Center for Genome Resources 3300017552 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 49.654 -127.436 5324724 10972 6 4 11 9 0.0 Metatranscriptome 3300033605 *Microbiome Permanent Draft Phytoplankton bloom bacterial communities from coast of New Jersey, USA Phytoplankton bloom bacterial communities from cosat of New Jersey, USA - 30 Meters Michigan State University 3300033605 Metatranscriptome Analysis SPAdes v. 3.13.0 released by JGI data releasing policy No Yes zehnp1jr@cmich.edu Jessica Zehnpfennig No Environmental Aquatic Coastal Marine Unclassified Phytoplankton bloom 37.8665611 -70.23155278 232965424 769626 899 412 1941 1237 0.0 Metatranscriptome 3300007193 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - OCT_C_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007193 Metatranscriptome Analysis megahit v. 0.2.0 No Yes binskeep@montana.edu, binskeep@montana.edu; jim.fredrickson@pnnl.gov William Inskeep, William P. Inskeep; Jim Fredrickson No Environmental Aquatic Unclassified Thermal springs Unclassified Thermal springs 44.534 -110.7978 76574785 223595 2296 96 13911 209 SRX2522150 Unrestricted 0.0 Metatranscriptome 3300009223 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from Amazon river, Brazil - RCM3 University of Georgia 3300009223 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic River Freshwater Unclassified River water 144614105 428275 91 60 867 284 SRX858767 0.0 Metatranscriptome 3300016790 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine host-associated eukaryotic communities from Atlantic Ocean in ATCC medium 1525, 20 C and 612 ?mol photons light - Pessonella sp. PRA-29 (MMETSP0420) National Center for Genome Resources 3300016790 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Amoebozoa Unclassified Pessonella Unclassified marine host-associated 16176653 18996 8 3 14 9 SRX551181 0.0 Metatranscriptome 3300010103 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_16_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010103 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 60595467 142360 54 394 12131 4017 Unrestricted 0.0 Metatranscriptome 3300041746 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_355 MetaT AgResearch, New Zealand, Mosgeil 3300041746 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 66621816 143404 192 54 1243 232 0.0 Metatranscriptome 3300012742 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES027 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012742 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 43105388 91577 220 60 3814 1686 SRX3527149 Unrestricted 0.0 Metatranscriptome 3300009740 *Microbiome Permanent Draft Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling Methane-oxidizing artificial microbial communities from Washington, USA to study methane cycling - T10-HHNO3 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009740 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes milachis@u.washington.edu Ludmila Chistoserdova No Engineered Modeled Plant nodule Simulated communities (microbial mixture) Unclassified Methane-oxidizing 47.6193 -122.2449 47920462 145518 1 0 288 4 SRX2525431 Unrestricted 0.0 Metatranscriptome 3300048534 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 819592ec-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048534 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 123737916 314020 146 160 1214 1086 Unrestricted 25.85 Metatranscriptome 3300035622 *Microbiome Permanent Draft Sediment microbial communities from Lake Washington near Medina, WA, United States Metatranscriptome of methane-enriched sediment microbial communities from Lake Washington, WA, United States - HO-FL-FA-2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035622 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes milachis@u.washington.edu Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment sediment 47.6215 -122.2558 101345744 118781 7 72 21 64 SRX8379919 Unrestricted 103.03 Metatranscriptome 3300052462 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 88-S41Day28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052462 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 32346115 59367 5 1 30 13 Unrestricted 243.38 Metatranscriptome 3300039419 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metataranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0817U12re (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300039419 Metatranscriptome Analysis MEGAHIT v. 1.2.9 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.039 145187605 304585 426 1023 15143 2595 SRX8669800 Unrestricted 47.36 Metatranscriptome 3300056965 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Frasne, France - Sphagnum fallax 9C_SF_FR (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056965 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 180991344 386861 170 76 366 422 Unrestricted 61.55 Metatranscriptome 3300011310 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S2 DCM_B metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011310 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 70826865 164099 81 35 1952 1806 SRX3196590 Unrestricted 0.0 Metatranscriptome 3300032825 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_05JUN2017_LR1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032825 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Phylloplane/Leaf Phyllosphere Unclassified phyllosphere 42.3951 -85.3736 41934403 68494 22 8 65 54 SRX7519506 Unrestricted 46.21 Metatranscriptome 3300017583 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 20 C, 28 psu salinity and 322 ?mol photons light - Amphidinium carterae CCMP 1314 (MMETSP0399) (SRX549007-SRR1294393) National Center for Genome Resources 3300017583 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 41.56 -70.583 2021436 4789 0 0 0 0 0.0 Metatranscriptome 3300016991 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with Sargasso seawater w/o nitrate, 14 C, 36 psu salinity and 101 ?mol photons light - Ditylum brightwellii GSO105 (MMETSP1001) National Center for Genome Resources 3300016991 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 47.74 -122.417 28711313 34134 31 9 59 23 0.0 Metatranscriptome 3300052459 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 29-S43Day28 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052459 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 103581804 195303 17 3 58 13 Unrestricted 102.07 Metatranscriptome 3300017246 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium, 20 C, 21 psu salinity and 480 ?mol photons light - Coscinodiscus wailesii CCMP 2513 (MMETSP1066) National Center for Genome Resources 3300017246 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 31.4322 -80.358 39159288 63772 7 1 12 2 0.0 Metatranscriptome 3300022506 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-26-M (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022506 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 168874784 402362 335 604 9640 4697 SRX4401551 Unrestricted 0.0 Metatranscriptome 3300034447 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_119 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034447 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92039953 -106.94828697 40140018 87938 340 140 1145 1006 SRX8239222 Unrestricted 17.26 Metatranscriptome 3300006693 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP0437 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006693 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -22.5716 -36.5529 61988278 187808 2105 2166 5253 5337 SRX3299066 Unrestricted 0.0 Metatranscriptome 3300030768 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T30 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030768 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 53935688 101486 71 48 70 285 SRX5352641 Unrestricted 17.52 Metatranscriptome 3300019131 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_081 - TARA_N000001424 (ERX1809759-ERR1740116) Canada's Michael Smith Genome Sciences Centre 3300019131 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -44.5455 -52.3242 265937670 577877 12 26 23 245 0.0 Metatranscriptome 3300031482 *Microbiome Permanent Draft Soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - STER_R4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031482 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thb15@psu.edu Terrence Bell No Engineered Artificial ecosystem Surface biofilm Soil microcosm Unclassified soil 40.7997 -77.8629 10045722 14312 12 0 68 14 SRX5811526 Unrestricted 235.65 Metatranscriptome 3300037024 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Growout1_18 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037024 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 391358906 829532 765 54 1483 1133 SRX8834024 Unrestricted 22.47 Metatranscriptome 3300005386 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1700_B MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005386 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 9940483 31169 602 0 1411 7 SRX2521680, SRX2521679 Unrestricted 0.0 Metatranscriptome 3300009941 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 7, 12m depth; RNA IDBA-UD Marine Biological Laboratory 3300009941 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 6.93 162357808 400063 5210 198 24974 554 0.0 Metatranscriptome 3300048661 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Metatranscriptome of beaver colon microbial communities from Maple Ridge, British Columbia, Canada - B3_PC1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048661 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Large intestine Digestive system Unclassified colon 49.2552 -122.5085 299514726 572392 5 25 230 79 Restricted 79.9 Metatranscriptome 3300056990 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Frasne, France - Sphagnum fallax 7C_SF_FR (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300056990 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 46.8263 6.1724 191258698 413295 189 102 400 544 Unrestricted 59.81 Metatranscriptome 3300009348 *Microbiome Permanent Draft Microbial communities of thrombolites from Highborne Cay, Bahamas Microbial communities of thrombolites from Highborne Cay, Bahamas - Zone2_total_RNA University of Florida 3300009348 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Saline Non-marine Saline and Alkaline Microbial mats Microbial mats 24.72 -76.82 47559849 149229 857 611 17076 6249 SRX706431 0.0 Metatranscriptome 3300037713 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of photosynthetic mat microbial communities from Octopus Spring, YNP, Wyoming, United States - 20090729 0500 sample t8cd (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037713 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 80823735 183710 0 0 53 1 SRX9381211 Unrestricted 236.31 Metatranscriptome 3300032404 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day2_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032404 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 28669172 50490 21 0 76 2 SRX6857166 Unrestricted 53.71 Metatranscriptome 3300047595 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_7_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047595 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 15932490 32182 1 0 19 0 Restricted 74.61 Metatranscriptome 3300030855 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 Emin (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030855 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7184 6.3471 546153401 1510307 7333 1516 15331 4200 SRX3346471 Unrestricted 0.0 Metatranscriptome 3300003723 *Microbiome Permanent Draft Saline, thermophilic phototrophic and chemotrophic mat microbial communities from various locations in USA and Mexico Hypersaline microbial mat communities from Yellowstone National Park, Wyoming, USA - Beowulf (BE_B) (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003723 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes jim.fredrickson@pnnl.gov Jim Fredrickson No Environmental Aquatic Hot (42-90C) Thermal springs Unclassified Hypersaline mat 44.376 -110.69 7794074 13277 38 3 66 8 SRX2576718 Unrestricted 0.0 Metatranscriptome 3300032015 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen2, Rep 3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032015 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 8544331 17276 1 0 31 1 SRX5359248 Unrestricted 23.5 Metatranscriptome 3300019077 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS695_0p8 J. Craig Venter Institute (JCVI) 3300019077 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 13632682 53954 41 18 222 593 0.0 Metatranscriptome 3300018583 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_046 - TARA_N000000270 (ERX1782454-ERR1711980) Canada's Michael Smith Genome Sciences Centre 3300018583 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -0.6623 73.1629 49596251 101743 6 21 13 119 0.0 Metatranscriptome 3300010136 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_24_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010136 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 93720500 219586 55 508 3593 4074 Unrestricted 0.0 Metatranscriptome 3300006707 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP0362 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006707 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean -15.83 -33.4 78023140 265391 2863 2312 7397 6606 SRX3299037 Unrestricted 0.0 Metatranscriptome 3300028524 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States - R1184 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028524 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary water 46.234 -123.909 47464859 102157 85 116 203 753 SRX5085948 Unrestricted 0.0 Metatranscriptome 3300043904 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA49 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043904 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Unclassified Soil Unclassified soil 35.7877 -78.6442 38571078 86332 117 298 1469 1882 Unrestricted 38.09 Metatranscriptome 3300008037 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Puerto Morelos, Mexico - Orbicella 8 T C metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300008037 Metatranscriptome Analysis megahit v. 0.2.0 No Yes momedinamunoz@gmail.com Monica _ Medina, Medina Medina No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral host 20.8778 -86.8431 344974840 528864 107 187 407 763 SRX3362322 Unrestricted 0.0 Metatranscriptome 3300012766 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Montjoie, Canada - M_140807_M_mt (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012766 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.4091 -72.0994 132252487 290717 379 156 2263 11832 SRX3015270 Unrestricted 0.0 Metatranscriptome 3300041762 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R17_50 MetaT AgResearch, New Zealand, Mosgeil 3300041762 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 43961962 92991 84 37 683 126 0.0 Metatranscriptome 3300036471 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen6, Rep 1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036471 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 95891635 131964 3 0 93 1 SRX8382085 Unrestricted 90.36 Metatranscriptome 3300016973 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Atlantic Ocean in F/2 medium with seawater with 10uM nitrate, 14 C, 35 psu salinity and 469 ?mol photons light - Thalassiosira gravida GMp14c1 (MMETSP0493) National Center for Genome Resources 3300016973 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 41.92732 -67.85788 25801018 33308 5 1 16 1 0.0 Metatranscriptome 3300017259 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in ESM medium, at 20 C, 35 psu salinity and 754 ?mol photons light - Palpitomonas bilix NIES-2562 (MMETSP0780_2) National Center for Genome Resources 3300017259 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 33939788 43750 10 3 12 5 0.0 Metatranscriptome 3300006570 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling - Hofmockel_1000040-3 ISU MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006570 Metatranscriptome Analysis megahit v. 0.2.0 No Yes khof@iastate.edu, kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Agricultural land Soil Unclassified Enriched soil aggregate 42.0266187 -93.6486594 35902874 89140 432 87 1689 178 SRX3195281 Unrestricted 0.0 Metatranscriptome 3300018552 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS669_3p0 J. Craig Venter Institute (JCVI) 3300018552 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 65.73045 22.445047 4631940 23885 15 4 323 412 0.0 Metatranscriptome 3300052446 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 111-S77Day7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052446 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 59838884 121277 23 1 94 13 Unrestricted 95.72 Metatranscriptome 3300004788 *Microbiome Permanent Draft Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004788 Metatranscriptome Analysis megahit v. 0.2.0 No Yes vdenef@umich.edu Vincent Denef No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 43.1998 -86.5698 365368690 1164352 3221 1690 12361 12692 SRX5329103 Unrestricted 0.0 Metatranscriptome 3300022533 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022533 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 536059730 1221275 235 666 4520 4592 SRX4405719 Unrestricted 0.0 Metatranscriptome 3300046602 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-63 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046602 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4205 -64.1498 104513647 250518 821 22 1337 485 Unrestricted 17.44 Metatranscriptome 3300008781 *Microbiome Permanent Draft Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico Microbial communities of ocean water from oxygen minimum zone off the coast of Manzanillo, Mexico - 100m_>1.6micron Georgia Institute of Technology 3300008781 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hypoxic zone Marine Unclassified Ocean water 18.9 -104.5 1565944 3251 23 21 587 293 SRX895493 0.0 Metatranscriptome 3300047419 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81957348-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047419 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 194423967 479036 424 259 1778 1606 Unrestricted 48.53 Metatranscriptome 3300030666 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under control temperature from Pennsylvania, USA - 34_T2E_2612EL1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030666 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 92546815 111036 0 4 27 276 SRX4646565 Unrestricted 0.0 Metatranscriptome 3300021169 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021169 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.7468 -122.0193 596340258 1169424 662 209 18339 8727 SRX4010492 Unrestricted 0.0 Metatranscriptome 3300016810 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in HESNW medium w/o silica, at 18 C, 30 psu salinity and 227 ?mol photons light - Prorocentrum micans CCCM 845 (MMETSP0251_2) National Center for Genome Resources 3300016810 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 2156627 7539 1 8 4 17 0.0 Metatranscriptome 3300021874 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S32 C1 B24 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021874 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 62.800035 -21.740748 40007012 86205 45 27 95 104 SRX5204708 Unrestricted 0.0 Metatranscriptome 3300018569 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS678_0p8 J. Craig Venter Institute (JCVI) 3300018569 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 58.581234 18.232801 22901701 63394 31 53 1366 663 0.0 Metatranscriptome 3300017262 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Tyrrhenian Sea in autoclaved artificial seawater, 19 C, 33 psu salinity and 291 ?mol photons light - Pseudokeronopsis sp. OXSARD2 (MMETSP0211) National Center for Genome Resources 3300017262 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 38.54 8.46 31610624 69400 40 17 77 23 0.0 Metatranscriptome 3300022499 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-O (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022499 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 89027329 207991 492 737 11521 5544 SRX4399752 Unrestricted 0.0 Metatranscriptome 3300046161 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-221 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046161 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4604 -64.2162 187359626 439703 529 31 1002 579 Unrestricted 19.59 Metatranscriptome 3300035594 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - May K (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035594 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4336 16.6836 60304130 125723 201 389 2804 1278 SRX8210230 Unrestricted 45.99 Metatranscriptome 3300016858 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in modified f/2 media, 18 C, 32 psu salinity and 664 ?mol photons light - Vaucheria litorea CCMP 2940 (MMETSP0946) National Center for Genome Resources 3300016858 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Salt marsh marine 10381114 15543 10 7 16 10 0.0 Metatranscriptome 3300058669 *Microbiome Permanent Draft Pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA Metatranscriptome of pink berry consortia microbial communities from Little Sippewissett Salt Marsh, Falmouth, MA, USA - TP14.3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300058669 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes ewilbanks@ucsb.edu Elizabeth Wilbanks No Environmental Aquatic Intertidal zone Marine Salt marsh Pink berry aggregates 41.57582 -70.63919 231287791 483978 18 21 145 133 Unrestricted 107.31 Metatranscriptome 3300010417 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS4_55_TP2_12L Marine Biological Laboratory 3300010417 Metatranscriptome Analysis CLC genomics wb7 released per JGI data release policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Sediment Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 855431 1925 49 8 397 11 0.0 Metatranscriptome 3300004471 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 57 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004471 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 129764890 361078 7400 2928 27623 6493 Unrestricted 0.0 Metatranscriptome 3300019104 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_036 - TARA_N000000314 (ERX1782308-ERR1711955) Canada's Michael Smith Genome Sciences Centre 3300019104 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 20.807 63.513 117066034 260183 8 35 46 239 0.0 Metatranscriptome 3300030908 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Litter TCEFA (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030908 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr; dcullen@wisc.edu Francis M. Martin; Daniel Cullen No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 46.9233 -110.871944 1390149547 3758751 951 276 1745 667 SRX3343349 Unrestricted 0.0 Metatranscriptome 3300017151 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 14 C, 36 psu salinity and 165 ?mol photons light - Skeletonema dohrnii SkelB (MMETSP0562) National Center for Genome Resources 3300017151 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Estuary marine 41.57361 -71.40861 25474838 33903 2 1 2 3 0.0 Metatranscriptome 3300017609 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in ASW medium, resuspended in ASW w/o silicate, 20 C, 29 psu salinity and 692 ?mol photons light - Chaetoceros curvisetus (MMETSP0717) (SRX549068-SRR1294454) National Center for Genome Resources 3300017609 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 32.9 -117.255 20258763 34841 18 6 47 9 0.0 Metatranscriptome 3300046252 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_2_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046252 Metatranscriptome Analysis megahit v. 2021-07-15 17:13:55 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Host-associated, Environmental Arthropoda, Terrestrial Insects nest Ant dump, Nest Nest dump ant dump 43.0765 -89.412 120450994 166363 5 10 84 64 Restricted 192.51 Metatranscriptome 3300037776 *Microbiome Permanent Draft Coal bed microbial communities from various locations in the United States Metatranscriptome of coal bed microbial communities from the Powder River Basin, Montana, United States - T0FGPRNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037776 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes epbarnhart@usgs.gov Elliott Barnhart No Environmental Aquatic Groundwater Deep subsurface Coalbed methane well water coal bed water 45.435 -106.392 62796918 118721 30 26 574 90 SRX9391587 Unrestricted 52.39 Metatranscriptome 3300046587 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - S1-R2-A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046587 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3555 19.0475 103620755 236493 235 132 497 500 Unrestricted 47.86 Metatranscriptome 3300026396 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0912-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026396 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 83314703 147422 15 4 8 36 SRX4796174 Unrestricted 51.68 Metatranscriptome 3300011047 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 34 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011047 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 31685468 74371 105 335 6936 1307 Unrestricted 0.0 Metatranscriptome 3300003745 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_30_13H Marine Biological Laboratory 3300003745 Metatranscriptome Analysis CLC Genomics WB7 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 3756743 8386 64 4 98 11 0.0 Metatranscriptome 3300018924 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_038 - TARA_N000000046 (ERX1789468-ERR1719259) Canada's Michael Smith Genome Sciences Centre 3300018924 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 19.0359 64.511 454140205 771856 10 50 32 207 0.0 Metatranscriptome 3300038147 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_M1_C1_D1_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038147 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 33543526 63524 589 1616 8556 5039 SRX9386045 Unrestricted 104.86 Metatranscriptome 3300046269 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_4_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046269 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 68269463 113805 1 0 17 0 Restricted 184.93 Metatranscriptome 3300052733 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Geslau, Bavaria, Germany - PB25_MT_150518 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052733 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 49.36918936 10.31189404 29394840 62673 11 6 628 18 Unrestricted 0.0 Metatranscriptome 3300012377 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_8_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012377 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 117429994 281871 92 633 4404 5708 Unrestricted 0.0 Metatranscriptome 3300032744 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Amb9_24May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032744 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 1033675360 1769915 13 7 31 189 SRX6411414 Unrestricted 0.0 Metatranscriptome 3300043276 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - Treefall.Mar18.R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043276 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.5322 -110.7965 8-9 26448611 54132 24 0 263 0 SRX10106455 Unrestricted 45.94 Metatranscriptome 3300046283 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_4_F (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046283 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 48769604 82681 2 0 27 2 Restricted 181.37 Metatranscriptome 3300030533 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Bb9 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030533 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 74288146 188432 36 93 1714 681 SRX4547029 Unrestricted 0.0 Metatranscriptome 3300048977 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 76 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048977 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.9364 -81.6542 4432291 8931 13 6 32 37 Restricted 66.31 Metatranscriptome 3300008572 *Microbiome Permanent Draft Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France - CSM2012-AB-F-N Centre National de la Recherche Scientifique (CNRS) 3300008572 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Lake Freshwater Microbial mats Freshwater lake 24190424 89202 722 407 5150 2773 SRX528797 0.0 Metatranscriptome 3300011086 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 49 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011086 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 110138539 259351 237 441 19622 2767 Unrestricted 0.0 Metatranscriptome 3300006953 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006953 Metatranscriptome Analysis megahit v. 0.2.0 No Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil 45.54 -73.72 1507252103 4927914 221 45 532 137 SRX2522022 Unrestricted 0.0 Metatranscriptome 3300048600 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_1_D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048600 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 37034615 55327 1 0 20 0 Restricted 303.56 Metatranscriptome 3300023547 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023547 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 49.0427 13.6161 12043463 27427 41 32 953 329 SRX4455328 Unrestricted 52.23 Metatranscriptome 3300016905 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Bellingshausen Sea in L1 medium with NH4Cl, 0 C, 32 psu salinity and 718 ?mol photons light - Chlamydomonas sp. CCMP681 (MMETSP1180) National Center for Genome Resources 3300016905 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -64.7667 -64.0 14951571 19012 6 10 11 16 0.0 Metatranscriptome 3300018812 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_040 - TARA_N000000065 (ERX1789716-ERR1719392) Canada's Michael Smith Genome Sciences Centre 3300018812 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 17.4814 67.9947 200592324 436847 4 25 21 246 0.0 Metatranscriptome 3300005244 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1000_T MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005244 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 69227056 166816 51 0 277 1 SRX2521481, SRX2521482 Unrestricted 0.0 Metatranscriptome 3300031739 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean - PS103-1.R3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031739 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified marine -45.9539 6.2869 1119938283 2107562 26 7 33 165 SRX5356433 Unrestricted 12.24 Metatranscriptome 3300017022 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Long Island Sound grown at 20 C, 30 psu salinity and 166 ?mol photons light - Heterosigma akashiwo CCMP 452 (MMETSP0894_2) National Center for Genome Resources 3300017022 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 41.0 -73.0 16275604 28509 5 1 9 1 0.0 Metatranscriptome 3300003684 *Microbiome Permanent Draft Freshwater and sediment microbial communities from a dead zone in Lake Erie, USA Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA - 2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003684 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes rmmckay@bgsu.edu Robert McKay, Robert M. McKay No Environmental Aquatic Lentic Freshwater Sediment Freshwater and sediment 41.474889 -82.854137 98549937 204274 34 230 69 1636 SRX2554951, SRX2554952 Unrestricted 0.0 Metatranscriptome 3300066464 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Metatranscriptome of woodchip biofilm microbial communities from lab scale WBRs in New York, USA - hf_drw_p2_t3_h8_prok (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300066464 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 46654054 117641 87 75 750 388 Unrestricted 0.0 Metatranscriptome 3300028165 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0948-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028165 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 158631971 279614 38 15 27 107 SRX5244914 Unrestricted 72.08 Metatranscriptome 3300036788 *Microbiome Permanent Draft Soil microbial communities from Everglades Agricultural Area, Florida, United States Metatranscriptome of soil microbial communities from Everglades Agricultural Area, Florida, United States - EAA2017_Dec_plot5_rep1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036788 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes w.martenshabbena@ufl.edu Willm Martens-Habbena No Environmental Terrestrial Agricultural land Soil Unclassified soil 26.6541 -80.6298 201850648 458769 443 351 3652 2173 SRX8186922 Unrestricted 43.08 Metatranscriptome 3300034671 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034671 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 321462175 757614 137 836 4075 4276 SRX7520338 Unrestricted 19.95 Metatranscriptome 3300051591 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 24_100_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051591 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 161064172 408717 214 229 1528 1374 Unrestricted 46.55 Metatranscriptome 3300035371 *Microbiome Permanent Draft Systems level insights into methane cycling in arid and semi-arid ecosystems Metatranscriptome of Bradyrhizobium sp. W and Methylocaldum sp. 0917 mixed culture communities from SDSU, California, USA - Exp#3 BR3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035371 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mkalyuzhnaya@sdsu.edu Marina Kalyuzhnaya No Engineered Lab culture Bacteria Culture media Unclassified defined medium 32.7717 -117.0735 14176184 19993 0 0 9 0 SRX8294604 Unrestricted 529.99 Metatranscriptome 3300012402 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012402 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 195047553 472357 65 539 8233 5635 Unrestricted 0.0 Metatranscriptome 3300026573 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepC_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026573 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 337555311 704873 77 129 1006 1715 SRX4797132 Unrestricted 16.04 Metatranscriptome 3300046546 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_1_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046546 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 29998094 40950 1 0 17 0 Restricted 317.91 Metatranscriptome 3300006878 *Microbiome Permanent Draft Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006878 Metatranscriptome Analysis megahit v. 0.2.0 No Yes philippe.constant@iaf.inrs.ca Philippe Constant Yes 28363961 Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified Soil 45.54 -73.72 63055768 260108 45 5 121 14 SRX2522013, SRX2522012 Unrestricted 0.0 Metatranscriptome 3300059632 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_25 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059632 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 327130889 755419 581 211 2449 1107 Unrestricted 0.0 Metatranscriptome 3300030651 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 18_T2E_8DEL1 developmental time series (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030651 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 115819262 174450 16 34 557 386 SRX4646342 Unrestricted 0.0 Metatranscriptome 3300009969 *Microbiome Permanent Draft Hydrate Ridge Gastropod Epibiont Candidatus Thiomargarita nelsonii HR-S10 and Its Epibiont Community Thiomargarita spp. colony and attached microbial community from Benguela Upwelling Sediments, Namibia, Africa - JVB8 University of Minnesota - Twin Cities 3300009969 Metatranscriptome Analysis iDBA 0.20 released per JGI data release policy Yes Yes beflood@umn.edu Beverly Flood No Environmental Aquatic Unclassified Sediment Unclassified marine sediment -23.0 14.37 498443 1312 0 0 3 0 0.0 Metatranscriptome 3300017359 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine sediment eukaryotic communities from Tyrrhenian Sea in L1 medium with seawater, 20 C, 33 psu salinity and 588 ?mol photons light - Alexandrium andersonii CCMP 2222 (MMETSP1436) National Center for Genome Resources 3300017359 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Sediment marine sediment 40.75 14.25 35910819 75544 0 1 0 2 0.0 Metatranscriptome 3300010073 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_2_24_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010073 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 28008010 67064 211 510 28860 4540 Unrestricted 0.0 Metatranscriptome 3300008844 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_4003 Massachusetts Institute of Technology 3300008844 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 1337895 4148 2 2 187 385 0.0 Metatranscriptome 3300030550 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Bb8 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030550 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Orchard Soil Truffle orchard soil 48.3625 5.7397 416195674 975560 119 417 1644 618 SRX4547026 Unrestricted 0.0 Metatranscriptome 3300048710 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-205 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048710 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4604 -64.2162 59033957 137437 521 35 1052 704 Unrestricted 25.48 Metatranscriptome 3300049557 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P34SSC2_191111_i (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049557 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 59367810 142893 109 196 919 1206 Unrestricted 0.0 Metatranscriptome 3300017362 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Gulf of Mexico in L1 medium, 22 C, 32 psu salinity and 675 ?mol photons light - Scrippsiella trochoidea CCMP 3099 (MMETSP0271) National Center for Genome Resources 3300017362 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 27.3122 -82.601 103544827 132462 26 2 55 1 0.0 Metatranscriptome 3300030905 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030905 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92044255 -106.94881797 292456428 679272 656 497 2457 2495 SRX8134588 Unrestricted 26.07 Metatranscriptome 3300046156 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-222 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046156 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4604 -64.2162 137012981 310720 486 38 1040 536 Unrestricted 23.1 Metatranscriptome 3300006087 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS906_Marker113_RNA Marine Biological Laboratory 3300006087 Metatranscriptome Analysis CLC genomics wb7 released per JGI data release policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse flow hydrothermal vents 45.92276 -129.988226 3730957 12752 76 11 433 28 0.0 Metatranscriptome 3300045469 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P26SSC2_191112_c (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300045469 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 44027844 109003 106 275 1523 1354 SRX20650852 Unrestricted 197.53 Metatranscriptome 3300016908 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with Sargasso seawater, 14 C, 36 psu salinity and 164 ?mol photons light - Skeletonema marinoi skelA (MMETSP0918) National Center for Genome Resources 3300016908 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Estuary marine 41.57361 -71.40861 26647525 29987 2 3 1 6 0.0 Metatranscriptome 3300006731 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S7 AAIW_A metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006731 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 208586089 614481 1798 1404 4510 4352 SRX5332605 Unrestricted 0.0 Metatranscriptome 3300057133 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Western Region, Iceland - Sphagnum magellanicum C1_MAG_ICE (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300057133 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 111532798 229429 144 104 351 467 Unrestricted 50.6 Metatranscriptome 3300017541 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Great South Bay, New York in HESNW medium w/o silica, 18 C, 30 psu salinity and 514 ?mol photons light - Akashiwo sanguinea CCCM 885 (MMETSP0223_2) (SRX549076-SRR1294462) National Center for Genome Resources 3300017541 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 40.6666 -73.25 56399 174 0 0 0 0 0.0 Metatranscriptome 3300018899 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_085 - TARA_N000001029 (ERX1809754-ERR1740133) Canada's Michael Smith Genome Sciences Centre 3300018899 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -62.0385 -49.529 276795896 630000 20 8 27 59 0.0 Metatranscriptome 3300019096 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS676_0p1 J. Craig Venter Institute (JCVI) 3300019096 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 62.09708 18.5427 62554490 190154 3 6 186 208 0.0 Metatranscriptome 3300059680 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_20 (Metagenome Metatranscriptome) (v5.1 annotation) (version 2) DOE Joint Genome Institute (JGI) 3300059680 Metatranscriptome Analysis megahit v. 2021-11-04 03:33:32 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 209001638 477976 234 59 678 304 Unrestricted 0.0 Metatranscriptome 3300006444 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling - Hofmockel_1000188-3 ISU MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006444 Metatranscriptome Analysis megahit v. 0.2.0 No Yes khof@iastate.edu, kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Agricultural land Soil Unclassified Enriched soil aggregate 42.0266187 -93.6486594 63827262 143721 187 184 940 341 SRX3195503 Unrestricted 0.0 Metatranscriptome 3300012751 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Montjoie, Canada - M_130821_E_mt (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012751 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.4091 -72.0994 86922879 186018 394 142 2151 6004 SRX3015190 Unrestricted 0.0 Metatranscriptome 3300004136 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF214 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004136 Metatranscriptome Analysis megahit v. 0.2.0 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.531427 -72.189946 122703024 435451 8823 1403 27765 4531 SRX2013924 Unrestricted 0.0 Metatranscriptome 3300052750 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_31 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052750 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 95526207 250513 125 144 1225 834 Unrestricted 60.83 Metatranscriptome 3300038282 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_M1_C1_D1_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038282 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 92245893 182846 548 2328 5833 6935 SRX9390612 Unrestricted 127.81 Metatranscriptome 3300008932 *Microbiome Permanent Draft Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica Eukaryotic and microbial communities from ice edge, McMurdo Sound, Antarctica - 2A J. Craig Venter Institute (JCVI) 3300008932 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Ice edge, McMurdo Sound, Antarctica -77.36 164.28 178565225 510125 29 11 104 96 0.0 Metatranscriptome 3300030973 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB6 Emin (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030973 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7585 6.3578 479265642 1455065 12922 1522 25636 5171 SRX3351288 Unrestricted 0.0 Metatranscriptome 3300032372 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T1 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300032372 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7416 -117.7042 21071034 42668 89 57 139 343 SRX5351932 Unrestricted 0.0 Metatranscriptome 3300037636 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_M1_C1_D2_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037636 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 48096916 90798 653 2066 7707 5471 SRX9382714 Unrestricted 155.02 Metatranscriptome 3300005632 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling - Hofmockel_1000008-3 ISU MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005632 Metatranscriptome Analysis megahit v. 0.2.0 No Yes khof@iastate.edu, kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Agricultural land Soil Unclassified Enriched soil aggregate 42.0266187 -93.6486594 34055726 83185 177 42 822 134 SRX3195280 Unrestricted 0.0 Metatranscriptome 3300019011 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_076 - TARA_N000000871 (ERX1782184-ERR1712079) Canada's Michael Smith Genome Sciences Centre 3300019011 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -20.9514 -35.2273 773517005 1492580 72 49 253 698 0.0 Metatranscriptome 3300031042 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031042 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 59.997 10.7902 10016738 20136 109 187 744 837 SRX5351405 Unrestricted 0.0 Metatranscriptome 3300026402 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Yuk_RepA_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026402 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 79639270 152429 42 73 233 548 SRX4547806 Unrestricted 23.74 Metatranscriptome 3300030810 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030810 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7043 29947170 62279 73 47 125 240 SRX5793964 Unrestricted 22.58 Metatranscriptome 3300029626 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Ser1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029626 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 35745339 69801 8 11 289 58 SRX5356128 Unrestricted 86.58 Metatranscriptome 3300047598 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_7_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047598 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 42271561 76395 1 0 9 7 Restricted 153.66 Metatranscriptome 3300030858 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 6B (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030858 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 299665037 938288 11710 1545 22655 4971 SRX2752866 Unrestricted 0.0 Metatranscriptome 3300017284 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 4 C, 31 psu salinity and 530 ?mol photons light - Geminigera cryophila CCMP 2564 (MMETSP0799) National Center for Genome Resources 3300017284 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 61797921 89185 6 5 9 6 0.0 Metatranscriptome 3300032407 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - WT_Day9_8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032407 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 25843472 42877 5 0 35 1 SRX6857985 Unrestricted 176.3 Metatranscriptome 3300024546 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Colum_RepA_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024546 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 176807628 377098 110 299 2043 2038 SRX4547790 Unrestricted 27.57 Metatranscriptome 3300017166 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in filtered seawater, 15 C, 29.4 psu salinity and 162 ?mol photons light - Favella taraikaensis Fe Narragansett Bay (MMETSP0436) National Center for Genome Resources 3300017166 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 41.30051 -71.71543 23519948 48622 49 12 82 15 0.0 Metatranscriptome 3300037027 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Omics10_030718 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037027 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 285179227 615850 806 108 1516 1894 SRX8834206 Unrestricted 22.97 Metatranscriptome 3300016855 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in ASW medium with 2.5 mg/L nocodazole, at 20 C, 30 psu salinity and 746 ?mol photons light - Tryblionella compressa CCMP 561 (MMETSP0747) National Center for Genome Resources 3300016855 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 21486909 26012 4 1 1 2 0.0 Metatranscriptome 3300013042 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched backyard soil microbial communities from Emeryville, California, USA - RNA 3rd pass 37_C BE-Lig BY (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013042 Metatranscriptome Analysis megahit v. 1.0.6 No Yes JMGladden@lbl.gov John Gladden No Environmental Terrestrial Unclassified Soil Unclassified soil 37.83 -122.29 17601338 32836 34 44 278 1625 SRX3901951 Unrestricted 0.0 Metatranscriptome 3300004785 *Microbiome Permanent Draft Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004785 Metatranscriptome Analysis megahit v. 0.2.0 Released by Nikos bc they passed the 6 months embargo date No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Unclassified Roots Unclassified Switchgrass rhizosphere and bulk soil 42.3912 -85.383786 138819288 446106 896 8187 2833 23073 SRX2705193 Unrestricted 0.0 Metatranscriptome 3300012396 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012396 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 166031948 396754 44 474 7240 5079 Unrestricted 0.0 Metatranscriptome 3300036280 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0608M02 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036280 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8962 -97.0386 34273115 67722 272 778 5155 2659 SRX8237040 Unrestricted 33.75 Metatranscriptome 3300055057 *Microbiome Permanent Draft Acid mine drainage microbial communities from coal mines in Pennsylvania and Ohio, United States Metatranscriptome of lab enriched acid mine drainage microbial communities from Akron, Ohio, USA - PML1_0D (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300055057 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes shagun2260@gmail.com Shagun sharma No Engineered Wastewater Mine water Industrial wastewater Acid mine drainage acid mine drainage 41.0775 -81.5114 8992030 16641 27 31 162 199 Restricted 435.91 Metatranscriptome 3300046070 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-182 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046070 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4963 -64.2287 91729213 222931 795 39 1314 596 Unrestricted 25.89 Metatranscriptome 3300012690 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES078 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012690 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.041 -89.686 55273652 111998 68 78 3461 2838 SRX3010940 Unrestricted 0.0 Metatranscriptome 3300008034 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Puerto Morelos, Mexico - Diploria C A metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300008034 Metatranscriptome Analysis megahit v. 0.2.0 No Yes momedinamunoz@gmail.com Monica _ Medina, Medina Medina No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral host 20.8778 -86.8431 363459567 553834 105 233 359 609 SRX3362334 Unrestricted 0.0 Metatranscriptome 3300052691 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_6A1_100218_2020 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052691 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 267230310 622631 456 90 1017 452 Unrestricted 86.89 Metatranscriptome 3300031066 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T11 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031066 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 46669977 92590 52 33 72 240 SRX5794232 Unrestricted 24.78 Metatranscriptome 3300035293 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Antarctic Ocean - DFB2_18 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035293 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified Seawater -46.5954 142.0314 332627833 679553 972 62 1941 1631 SRX8227881 Unrestricted 18.56 Metatranscriptome 3300006704 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP1785 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006704 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 9.2 -163.5 79828428 242101 1391 2858 4620 6887 SRX3299571 Unrestricted 0.0 Metatranscriptome 3300019074 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_041 - TARA_N000000074 (ERX1782410-ERR1711996) Canada's Michael Smith Genome Sciences Centre 3300019074 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 14.5536 70.0128 20691076 47591 1 19 13 127 0.0 Metatranscriptome 3300037738 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_OW2_C1_D4_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037738 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3778 -82.5111 67080166 129648 437 1713 4860 4790 SRX8889862 Unrestricted 171.38 Metatranscriptome 3300030991 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030991 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr; dcullen@wisc.edu Francis M. Martin; Daniel Cullen No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 45.7544 -113.9094 784768660 2557718 5333 293 8318 969 SRX3342350 Unrestricted 0.0 Metatranscriptome 3300016768 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in K/2 Ian medium, 22 C, 35 psu salinity and 347 ?mol photons light - unclassified eukaryote RCC 2335 (MMETSP1312) National Center for Genome Resources 3300016768 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 35.21666667 139.6166667 13355705 14198 14 3 21 20 0.0 Metatranscriptome 3300022234 *Microbiome Permanent Draft Characterization of microbial community from Mariana Back Arc Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Hafa_FS927_RNA_SIP_18hr_80 150_kmer Marine Biological Laboratory 3300022234 Metatranscriptome Analysis IDBA-UD 1.1.3 Trembath-Reichert et al. ?Active subseafloor microbial communities from Mariana back-arc venting fluids share metabolic strategies across different thermal niches and taxa?, ISMEJ 2019 No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Hydrothermal vent fluids 16.96175748 144.8691905 1860790 2531 59 0 190 0 0.0 Metatranscriptome 3300041883 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_480 MetaT AgResearch, New Zealand, Mosgeil 3300041883 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 64765528 142043 140 56 1456 187 0.0 Metatranscriptome 3300003160 *Microbiome Permanent Draft Avena fatua rhizosphere microbial communities from Hopland, California, USA, for root-enhanced decomposition of organic matter studies Avena fatua rhizosphere microbial communities - H4_Bulk_Litter_22 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300003160 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes mkfstone@berkeley.edu, nuccio1@llnl.gov; mkfstone@berkeley.edu Mary Firestone, Erin Nuccio; Mary Firestone No Host-associated Plants Rhizosphere Roots Soil Avena fatua rhizosphere 38.97364 -123.117453 5678828 11823 61 47 67 430 SRX2558224 Unrestricted 0.0 Metatranscriptome 3300010414 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS906_80_TP1_12L Marine Biological Laboratory 3300010414 Metatranscriptome Analysis CLC genomics wb7 released per JGI data release policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 3323211 7981 159 0 129 3 0.0 Metatranscriptome 3300008379 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34701 J. Craig Venter Institute (JCVI) 3300008379 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 19952 91 0 0 1 0 0.0 Metatranscriptome 3300046241 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_2_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046241 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 54748318 88464 7 42 158 204 Restricted 294.35 Metatranscriptome 3300030765 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T34 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030765 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 20412659 40994 61 48 124 253 SRX5352834 Unrestricted 19.7 Metatranscriptome 3300041869 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_475 MetaT AgResearch, New Zealand, Mosgeil 3300041869 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 14955287 32020 211 58 1622 162 0.0 Metatranscriptome 3300035597 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R1103M12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035597 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0386 94841814 210701 239 391 4595 1216 SRX8235704 Unrestricted 43.36 Metatranscriptome 3300024562 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepC_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024562 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 225143332 478627 117 158 953 1577 SRX4547671 Unrestricted 16.85 Metatranscriptome 3300017142 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, no silicate, 15 C, 15 psu salinity and 160 ?mol photons light - Heterosigma akashiwo NB (MMETSP0415) National Center for Genome Resources 3300017142 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Intertidal zone Marine Estuary marine 41.65583 -71.44778 23585216 46643 52 6 79 15 0.0 Metatranscriptome 3300021877 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-17 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021877 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine -20.9869 5.9971 43668413 96027 68 69 178 232 SRX6381279 Unrestricted 0.0 Metatranscriptome 3300030790 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_OS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300030790 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate/submediterranean forest 42.0 1.0 264410930 582376 327 265 4505 4790 SRX2999439 Unrestricted 0.0 Metatranscriptome 3300010016 *Microbiome Permanent Draft Black Band Disease transitions Microbial communities of stony corals with Black-band disease (BBD) from Carrie Bow Cay Field Station, Belize; BBD Transitions coral #3 sample T3N University of Maryland 3300010016 Metatranscriptome Analysis IDBA-Tran v1.1.1 released per JGI data release policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified marine 16.80288 -88.08213 78915952 220315 3 16 8 20 0.0 Metatranscriptome 3300041852 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_322 MetaT AgResearch, New Zealand, Mosgeil 3300041852 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 159701957 336336 250 130 1855 397 0.0 Metatranscriptome 3300028619 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_45m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028619 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 149912489 297979 326 77 4544 405 SRX5337939 Unrestricted 39.22 Metatranscriptome 3300024559 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepB_8d (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024559 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 212861773 431779 114 355 1433 2340 SRX4547782 Unrestricted 21.78 Metatranscriptome 3300013066 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched backyard soil microbial communities from Emeryville, California, USA - RNA 5th pass 37_C Kraft BY (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013066 Metatranscriptome Analysis megahit v. 1.0.6 No Yes jmgladden@lbl.gov John Gladden No Environmental Terrestrial Unclassified Soil Unclassified soil 37.83 -122.29 56230635 114014 4 0 85 55 SRX4809045 Unrestricted 0.0 Metatranscriptome 3300046149 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-26 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046149 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4056 -64.9059 77410146 184314 809 51 1325 537 Unrestricted 24.81 Metatranscriptome 3300032747 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Shad11_28May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032747 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 852095166 1459108 17 5 31 175 SRX6411418 Unrestricted 0.0 Metatranscriptome 3300012374 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_8_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012374 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 116014051 275353 63 574 4558 5529 Unrestricted 0.0 Metatranscriptome 3300028089 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Atlam_RepC_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028089 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 179840580 385968 76 193 1745 1407 SRX5245750 Unrestricted 26.15 Metatranscriptome 3300037675 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 RNA GHGhigh gp2 (Metagenome Metatranscriptome) - NovaSeq (version 2) DOE Joint Genome Institute (JGI) 3300037675 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen -40.3794 175.6106 300196845 581420 10 53 118 237 SRX4497763, SRX7509750 Unrestricted 0.0 Metatranscriptome 3300058540 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - Treefall.Mar18.R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300058540 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.5322 -110.7965 8-9 29738890 64020 3 0 75 0 Unrestricted 593.05 Metatranscriptome 3300020113 *Microbiome Permanent Draft Metatranscriptome of freshwater microbial communities within cyanobacterial aggregates from lake Taihu, China Freshwater microbial communities within cyanobacterial aggregates from lake Taihu, China - 10_5_0:00 Beijing Novogene Bioinformatics Technology Co., Ltd 3300020113 Metatranscriptome Analysis Trinity v2.4 released by JGI data releasing policy No Yes hycai@niglas.ac.cn haiyuan cai No Environmental Aquatic Lake Freshwater Unclassified freshwater 31.3 120.11 10487109 29385 51 14 42 238 0.0 Metatranscriptome 3300041450 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaT AgResearch, New Zealand, Mosgeil 3300041450 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Rhizoplane Roots Dairy farm pasture -43.648506 172.343549 15707398 24468 135 254 452 371 0.0 Metatranscriptome 3300018927 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_064 - TARA_N000000531 (ERX1782133-ERR1712125) Canada's Michael Smith Genome Sciences Centre 3300018927 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -29.5333 37.9117 270182360 826541 136 50 586 881 0.0 Metatranscriptome 3300011044 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 26 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011044 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 29591484 70192 96 193 7877 1132 Unrestricted 0.0 Metatranscriptome 3300018541 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS670_0p8 J. Craig Venter Institute (JCVI) 3300018541 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 65.73045 22.445047 407921 1899 0 0 34 75 0.0 Metatranscriptome 3300018640 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS859_ls5 J. Craig Venter Institute (JCVI) 3300018640 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 64052099 188112 68 12 86 187 0.0 Metatranscriptome 3300043782 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043782 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 32466175 73358 249 458 1637 2489 Unrestricted 55.44 Metatranscriptome 3300010178 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0700_B MetaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300010178 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes dab14@psu.edu Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 57724033 132655 1135 8 10086 41 SRX2521677, SRX2521678 Unrestricted 0.0 Metatranscriptome 3300046584 *Microbiome Permanent Draft Permafrost peat microbial communities from Stordalen, Sweden Metatranscriptome of permafrost peat microbial communities from Stordalen, Sweden - G3-R3-B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046584 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes crp1006@wildcats.unh.edu Clarice Perryman No Environmental Terrestrial Wetlands Soil Permafrost Permafrost peat 68.3549 19.0438 198740003 436081 138 288 1506 1589 Unrestricted 27.8 Metatranscriptome 3300010091 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_16_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010091 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 57736986 125576 96 531 12129 4711 Unrestricted 0.0 Metatranscriptome 3300017346 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine host-associated eukaryotic communities from unknown location in f/2 medium with natural seawater, 50% L1 mix, no silicate, at 26 C, 35 psu salinity and 361 ?mol photons light - Symbiodinium sp. C1 (MMETSP1367) National Center for Genome Resources 3300017346 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Microbial Unclassified Dinoflagellates Unclassified Marine host-associated 56174402 67010 36 14 63 23 SRX554235 0.0 Metatranscriptome 3300061826 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 52_rapeseed_1_T5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061826 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 27946513 74893 100 105 799 729 Unrestricted 183.43 Metatranscriptome 3300019107 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_124 - TARA_N000002041 (ERX1782217-ERR1711949) Canada's Michael Smith Genome Sciences Centre 3300019107 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -9.1463 -140.515 43569192 108875 2 25 2 122 0.0 Metatranscriptome 3300028245 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_8h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028245 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 31.4271 -81.6053 19956699 46018 249 82 3218 981 SRX5245740 Unrestricted 86.85 Metatranscriptome 3300012516 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_RNA1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012516 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes bcampb7@clemson.edu Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Freshwater to marine saline gradient 38.0754 -76.1533 234255566 482229 117 88 810 5953 SRX3007419 Unrestricted 0.0 Metatranscriptome 3300032520 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Amb1_24May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032520 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 1064989787 1799599 26 13 51 229 SRX6409998 Unrestricted 26.73 Metatranscriptome 3300029279 *Microbiome Permanent Draft Effect of Agricultural Soil Managment Practices on the Microbiome of Sorghum Soil microbial communities from UC West Side Research & Extension Center, Five Points, CA, USA - TP3.B2.stcc.R1 QB3 Vincent J. Coates Genomics Sequencing Laboratory 3300029279 Metatranscriptome Analysis MEGAHIT v. 1.1.2 released by JGI data releasing policy No Yes colemanderr@gmail.com Devin Coleman-Derr No Environmental Terrestrial Unclassified Soil Agricultural land Field Soil 36.339058 -120.12031 18059170 35816 234 1302 1505 4004 0.0 Metatranscriptome 3300004103 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF242 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004103 Metatranscriptome Analysis megahit v. 0.2.0 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.531427 -72.189946 171551025 554246 61 38 178 343 SRX2014020 Unrestricted 0.0 Metatranscriptome 3300005247 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_2000_T MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005247 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 55913157 136091 95 7 361 7 SRX2521357, SRX2521358 Unrestricted 0.0 Metatranscriptome 3300023544 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic - CSU4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023544 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 49.0427 13.6161 11748145 26285 20 34 796 327 SRX4455244 Unrestricted 69.3 Metatranscriptome 3300010920 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS917_55_12C_TP1_10 Marine Biological Laboratory 3300010920 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.9332 -129.982268 3359089 6886 434 3 855 8 0.0 Metatranscriptome 3300002876 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI073_120m_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002876 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Intertidal zone Marine Unclassified Marine 48.7299 -123.5699 25140937 64410 62 44 469 682 SRX3323211 Unrestricted 0.0 Metatranscriptome 3300030916 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030916 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7585 6.3578 702934108 2247541 9722 2555 20309 7881 SRX3350488 Unrestricted 0.0 Metatranscriptome 3300009323 *Microbiome Permanent Draft Aquatic microbial communities from Amazon river, Brazil and North Atlantic Ocean Microbial communities of water from the North Atlantic ocean - ACM32 University of Georgia 3300009323 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 24520825 76206 37 46 186 301 0.0 Metatranscriptome 3300064180 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 32_rapeseed_2_T0 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300064180 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 179472924 469579 227 212 1481 1406 SRX21992090 Unrestricted 101.67 Metatranscriptome 3300048974 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ontario, Canada - LE WWC BNZ 63 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048974 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.7385 -82.2743 22437738 33353 25 3 64 40 Restricted 51.91 Metatranscriptome 3300019137 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_102 - TARA_N000001664 (ERX1782291-ERR1711942) Canada's Michael Smith Genome Sciences Centre 3300019137 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -5.2692 -85.2121 176598735 375330 5 47 5 156 0.0 Metatranscriptome 3300010076 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_2_0_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010076 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 31593099 72954 233 765 28139 6499 Unrestricted 0.0 Metatranscriptome 3300016997 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Ionian Sea in autoclaved artificial seawater, 19 C, 33 psu salinity and 338 ?mol photons light - Litonotus pictus P1 (MMETSP0209) National Center for Genome Resources 3300016997 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 40.3 17.57 31826481 34363 0 1 1 2 0.0 Metatranscriptome 3300004115 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF216 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004115 Metatranscriptome Analysis megahit v. 0.2.0 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.531427 -72.189946 21920883 81169 417 195 1589 864 SRX2013928 Unrestricted 0.0 Metatranscriptome 3300038448 *Microbiome Permanent Draft Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States Metatranscriptome of soil eukaryotic communities from experimental microcosm in Duke University, North Carolina, United States - s87 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038448 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes colin.averill@usys.ethz.ch Colin Averill No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 36.0 -78.0 50156586 90823 39 95 456 711 SRX9169883 Unrestricted 76.4 Metatranscriptome 3300049542 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C13_A_4_drought (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049542 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 29248222 70278 46 50 223 305 Unrestricted 357.8 Metatranscriptome 3300029645 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Metatranscriptome of marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_1000m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029645 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified marine 50.0 -145.0 10019011 21597 5 5 96 238 SRX5337937 Unrestricted 19.46 Metatranscriptome 3300048667 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-110 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048667 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4426 -64.2061 16494469 37750 273 36 564 1261 Unrestricted 28.25 Metatranscriptome 3300008319 *Microbiome Permanent Draft Microbial communities from the gut of humanized mice in USA Microbial communities from the gut of humanized mice in USA - VKR.1ln.1.15dpc CCME-COLORADO 3300008319 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Large intestine Digestive system Fecal Mouse gut 38.65 -90.26 3648306 15705 47 1 643 12 0.0 Metatranscriptome 3300046153 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-105 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046153 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4426 -64.2061 59085649 138713 588 34 1099 444 Unrestricted 25.2 Metatranscriptome 3300027944 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0418-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300027944 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 178566114 294842 44 8 81 99 SRX5250632 Unrestricted 83.55 Metatranscriptome 3300019240 *Microbiome Permanent Draft Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes Metatranscriptome of peatland microbial communities from MTU Mesocosm Facility, Houghton, MI, USA - PEATcosm2014_Bin11_10_metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019240 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes erik.a.lilleskov@usda.gov Erik Lilleskov No Environmental Terrestrial Wetlands Soil Peat Bog 47.1149 -88.5476 207296514 507827 235 269 3810 1901 SRX3887061 Unrestricted 0.0 Metatranscriptome 3300020105 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 250-2.7um, replicate a, metaT Georgia Genomics Facility 3300020105 Metatranscriptome Analysis Trinity 2.06 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 30394777 96064 8335 1141 20210 3216 0.0 Metatranscriptome 3300019014 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_100 - TARA_N000001620 (ERX1789400-ERR1719204) Canada's Michael Smith Genome Sciences Centre 3300019014 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -12.9359 -96.0413 710881575 1465278 3 40 10 253 0.0 Metatranscriptome 3300021330 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.629 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021330 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.286 -124.052 141740250 376970 185 751 3892 2446 SRX4664099, SRX4664098 Unrestricted 0.0 Metatranscriptome 3300042489 *Microbiome Permanent Draft Aquatic microbiome from duckweeds obtained from Rutgers Duckweed Stock Cooperative (RDSC) Metatranscriptome of plant tissue microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col0_35E_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042489 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes lebeis.sarah@gmail.com Sarah Lebeis No Host-associated Plants Unclassified Phyllosphere Unclassified plant tissue 35.9544 -83.9294 52462467 73721 0 0 0 0 Unrestricted 263.03 Metatranscriptome 3300057136 *Microbiome Permanent Draft Peat moss microbial communities from sphagnum bogs in various regions of Europe Metatranscriptome of peat moss microbial communities from bog in Western Region, Iceland - Sphagnum magellanicum H3_MAG_ICE (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300057136 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes westondj@ornl.gov David Weston No Host-associated Plants Unclassified Peat moss Unclassified peat moss 64.6859 -21.405 188465721 404730 121 85 454 285 Unrestricted 29.98 Metatranscriptome 3300039420 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metataranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0817U20re (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300039420 Metatranscriptome Analysis MEGAHIT v. 1.2.9 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.039 133282091 271696 377 699 15394 1717 SRX8669902 Unrestricted 52.5 Metatranscriptome 3300004133 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF220 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004133 Metatranscriptome Analysis megahit v. 0.2.0 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.531427 -72.189946 87145539 324323 733 470 3174 1959 SRX2013927 Unrestricted 0.0 Metatranscriptome 3300008648 *Microbiome Permanent Draft Microbial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean Microbial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean - CTD-11-60 University of Michigan 3300008648 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hydrothermal vents Marine Unclassified Hydrothermal vents 8565479 36365 2378 181 11409 1160 0.0 Metatranscriptome 3300017281 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, low N, at 18 C, 32 psu salinity and 243 ?mol photons light - Heterosigma akashiwo CCMP 2393 (MMETSP0294) National Center for Genome Resources 3300017281 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 31586269 49031 23 4 42 9 0.0 Metatranscriptome 3300011329 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S9 250_B metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011329 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 154893810 339191 41 59 2910 2921 SRX3196637 Unrestricted 0.0 Metatranscriptome 3300008759 *Microbiome Permanent Draft Microbial communities of hydrothermal vent from Guaymas Basin, Gulf of California Microbial communities of hydrothermal vent from Guaymas Basin, Gulf of California - chimney sediment Shanghai Jiao Tong University 3300008759 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Hydrothermal vents Marine Sediment Hydrothermal vent chimney sediment 27.015 -111.033 19974778 71126 287 14 2850 43 0.0 Metatranscriptome 3300046182 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH6_3_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046182 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 60061341 102382 1 26 62 66 Restricted 175.75 Metatranscriptome 3300006265 *Microbiome Permanent Draft Prairie soil microbial communities from Kansas, USA, after rainfall Prairie soil microbial communities from Kansas, USA, after rainfall - K18 Oregon State University 3300006265 Metatranscriptome Analysis VELVET 1.2.10, combine 23, 27, 31 released per JGI data release policy No Yes lzeglin@ksu.edu Lydia Zeglin No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.1038 -96.6133 38720 232 4 0 0 0 0.0 Metatranscriptome 3300004641 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI048_200m_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004641 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam Yes 29087368 Environmental Aquatic Unclassified Marine Unclassified Marine 48.6 -123.5 108229609 293705 3975 1083 11654 3133 Unrestricted 0.0 Metatranscriptome 3300030722 *Microbiome Permanent Draft Marine microbial communities from Western Arctic Ocean, Canada Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB4_943_SCM (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030722 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Oceanic Marine Unclassified marine 75.0007 -150.0027 157700654 314899 191 34 384 921 SRX5651546 Unrestricted 22.99 Metatranscriptome 3300004540 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 55_HOW8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004540 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater Sediment 48.3807 -122.1599 32739240 77054 160 25 805 41 SRX2780067 Unrestricted 0.0 Metatranscriptome 3300030976 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLA6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030976 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 59.997 10.7902 14899460 27598 186 353 760 2037 SRX5351390 Unrestricted 0.0 Metatranscriptome 3300037708 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of photosynthetic mat microbial communities from Octopus Spring, YNP, Wyoming, United States - 20090729 1200 sample t14cd (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037708 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.534 -110.7979 140233849 341824 0 0 75 0 SRX9381223 Unrestricted 201.67 Metatranscriptome 3300021282 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States - R1035 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021282 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine water 46.195 -123.822 64691725 135803 227 605 1442 5560 SRX4015384 Unrestricted 0.0 Metatranscriptome 3300006368 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling - Hofmockel_1000044-3 ISU MetaT (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300006368 Metatranscriptome Analysis megahit v. 0.2.0 No Yes khof@iastate.edu, kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Agricultural land Soil Unclassified Enriched soil aggregate 42.0266187 -93.6486594 55778953 146082 357 134 1194 271 SRX3341156 Unrestricted 0.0 Metatranscriptome 3300003532 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS896_ElGuapo_RNA 3300003532 Metatranscriptome Analysis CLC genomics workbench 7.0 released by JGI data releasing policy No Yes cfortunato@mbl.edu, cfortunato@gmail.com Caroline Fortunato, Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.926575 -129.979479 4462511 15930 148 35 1017 107 0.0 Metatranscriptome 3300017189 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in F/2 medium with seawater, 0.4uM PO4, 20 C, 35 psu salinity and 383 ?mol photons light - Thalassiosira rotula GSO102 (MMETSP0910) National Center for Genome Resources 3300017189 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 48.629353 -122.957542 26040402 35075 3 2 5 1 0.0 Metatranscriptome 3300012754 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Montjoie, Canada - M_130821_M_mt (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012754 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 45.4091 -72.0994 95313194 201163 336 114 2360 8009 SRX3015192 Unrestricted 0.0 Metatranscriptome 3300059490 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 7R_CD_T1_R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059490 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 408988278 1023346 621 371 2548 2125 Unrestricted 47.22 Metatranscriptome 3300031168 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_D6_16mM_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031168 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 9768835 16161 3 1 2 4 SRX5783609 Unrestricted 25.02 Metatranscriptome 3300046422 *Microbiome Permanent Draft Soil microbial communities from Archbold Biological Station, Florida, USA Metatranscriptome of soil microbial communities from Archbold Biological Station, Florida, USA - ABS_bald_65E_Control (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046422 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes casearcy@bio.miami.edu Christopher Searcy No Environmental Terrestrial Unclassified Soil Shrubland Soil 27.1303 -81.3647 33453005 76890 80 123 849 718 Unrestricted 45.96 Metatranscriptome 3300036540 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0819M02 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036540 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8977 -97.0387 197097073 436522 323 634 7087 2265 SRX8237268 Unrestricted 19.44 Metatranscriptome 3300010118 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_16_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010118 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 74445125 174603 164 797 11058 6209 Unrestricted 0.0 Metatranscriptome 3300024543 *Microbiome Permanent Draft Freshwater microbial communities amended with dissolved organic matter (DOM) from various rivers in the United States Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepA_0h (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300024543 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bcrump@coas.oregonstate.edu Byron Crump No Environmental Aquatic River Freshwater Unclassified Freshwater 29.8571 -89.9778 151299648 322367 73 234 1805 1606 SRX4547786 Unrestricted 30.26 Metatranscriptome 3300007599 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Marine microbial communities from the Southern Atlantic ocean - KN S15 DCM_A metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007599 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine Oceanic -28.2362 -38.4949 69872789 228333 1935 2368 4684 8370 SRX3787154 Unrestricted 0.0 Metatranscriptome 3300009739 *Microbiome Permanent Draft Microbial and viral regulation of community carbon cycling across diverse low-oxygen zones Marine microbial and viral communities from Louisiana Shelf, Gulf of Mexico - GoM_2015_C6C_194_18m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009739 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes frank.stewart@biology.gatech.edu Frank Stewart No Environmental Aquatic Hypoxic zone Marine Unclassified Marine 28.8679 -90.4764 71711588 137391 186 1379 1250 10156 Unrestricted 0.0 Metatranscriptome 3300008841 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_4025 Massachusetts Institute of Technology 3300008841 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 4531751 15305 12 4 297 676 0.0 Metatranscriptome 3300032592 *Microbiome Permanent Draft Phyllosphere microbial comminities from bioenergy crops switchgrass and miscanthus from Michigan, USA Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_12SEP2016_LR2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032592 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shade.ashley@gmail.com Ashley Shade No Host-associated Plants Unclassified Phyllosphere Unclassified phyllosphere 42.39 -85.37 175444867 315774 169 188 317 819 SRX7077719 Unrestricted 40.28 Metatranscriptome 3300017163 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater and 400nM iron, 10.6uM silica, 19 C, 35 psu salinity and 661 ?mol photons light - Thalassiosira weissflogii CCMP 1010 (MMETSP1410) National Center for Genome Resources 3300017163 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.0 -65.0 32909016 34287 2 4 1 9 0.0 Metatranscriptome 3300012867 *Microbiome Permanent Draft Synthetic bacterial communities of pure cultures isolated from sediment of Lake Washington, USA Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under low oxygen conditions - MT methane_oxidizing 4strains_24hour-b (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012867 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes milachis@u.washington.edu Ludmila Chistoserdova No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Synthetic 47.6553 -122.3035 13599705 29493 0 0 300 0 SRX3015538 Unrestricted 0.0 Metatranscriptome 3300013057 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - RNA 3rd pass 37_C Kraft MG (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013057 Metatranscriptome Analysis megahit v. 1.0.6 No Yes jmgladden@lbl.gov John Gladden No Environmental, Engineered Terrestrial, Solid waste Composting Soil, Mixed feedstock Commercial compost compost 37.83 -122.29 37514324 76742 3 6 127 41 SRX4809042 Unrestricted 0.0 Metatranscriptome 3300001755 *Microbiome Permanent Draft Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis Fungi-associated bovine rumen microbiome from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis - Pilot-4 (Custom Analysis) DOE Joint Genome Institute (JGI) 3300001755 Metatranscriptome Analysis Released by Nikos bc they passed the 6 months embargo date No Yes mhess@lbl.gov, mhess@ucdavis.edu Matthias Hess No Host-associated Mammals Stomach Digestive system Rumen Fungi-associated bovine rumen 40.102108 -88.227299 5242206 17742 4 24 1144 99 Unrestricted 0.0 Metatranscriptome 3300022722 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022722 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil Mineral soil soil 42.481016 -72.178343 403230320 934561 266 655 4807 4603 SRX4403345 Unrestricted 0.0 Metatranscriptome 3300037615 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_M1_C1_D3_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037615 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 59738886 112890 372 1741 3589 4784 SRX9382759 Unrestricted 195.53 Metatranscriptome 3300016689 *Microbiome Permanent Draft Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011509AT metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300016689 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes abuchan@utk.edu Alison Buchan No Environmental Aquatic Intertidal zone Marine Salt marsh Salt marsh 31.972 -81.028 62387767 141237 52 379 1634 5779 SRX3780747 Unrestricted 0.0 Metatranscriptome 3300018779 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_022 - TARA_A100000698 (ERX1789670-ERR1719303) Canada's Michael Smith Genome Sciences Centre 3300018779 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.5705 17.4101 148300099 383392 7 20 15 122 0.0 Metatranscriptome 3300041478 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes White clover leaf microbial community from Lincoln, Canterbury, New Zealand - WCL18_10 MetaT AgResearch, New Zealand, Mosgeil 3300041478 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 4132948 7133 43 76 111 96 0.0 Metatranscriptome 3300012393 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012393 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 155659058 373990 73 756 5498 6896 Unrestricted 0.0 Metatranscriptome 3300034043 *Microbiome Permanent Draft FORHOT Natural soil warming experiment in Iceland Soil microbial communities from grassland in Hveragerdi, Iceland - GN4-E University of Vienna 3300034043 Metatranscriptome Analysis rnaSPAdes v. 3.12.0 released by JGI data releasing policy Yes Yes craig.herbold@microbial-ecology.net Craig Herbold No Environmental Terrestrial Unclassified Soil Grasslands Soil 64.025 -21.205 1445900525 5632856 187281 16450 780619 34154 0.0 Metatranscriptome 3300023541 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic - CSE4 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023541 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 49.0427 13.6161 5237198 11241 73 55 1590 471 SRX5243316, SRX4455245 Unrestricted 0.0 Metatranscriptome 3300052778 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 0_50_9 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052778 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 33695301 81945 466 391 2837 2468 Unrestricted 75.77 Metatranscriptome 3300034677 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034677 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 88305274 204316 424 1200 5598 5831 SRX7520481, SRX9093905 Unrestricted 0.0 Metatranscriptome 3300026432 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0929-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026432 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 142800503 271735 22 33 6 54 SRX4796197 Unrestricted 87.05 Metatranscriptome 3300017325 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in filtered seawater, at 15 C, 29.4 psu salinity and 267 ?mol photons light - Oxyrrhis marina (MMETSP0469) National Center for Genome Resources 3300017325 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 66749943 104292 69 26 139 47 0.0 Metatranscriptome 3300035296 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R1103M02 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300035296 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org; brandi.reese@tamucc.edu Brandi Kiel Reese; Brandi Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8985 -97.0386 84351136 186013 343 1187 3921 3883 SRX9139979, SRX9139978 Unrestricted 0.0 Metatranscriptome 3300031063 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_E6_Q_5 metaT (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031063 Metatranscriptome Analysis megahit v. 0.2.0 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine 654988426 2189452 314 283 560 819 SRX3341594 Unrestricted 0.0 Metatranscriptome 3300051597 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 48_50_13 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051597 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 87214943 232967 221 203 1327 1142 Unrestricted 78.54 Metatranscriptome 3300048971 *Microbiome Permanent Draft Freshwater microbial communities from Lake Erie in Ontario, Canada and Ohio, USA Metatranscriptome of freshwater eukaryotic communities from Lake Erie, Ohio, USA - LE WWC BNZ 59 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048971 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Lake Freshwater Unclassified freshwater 41.6663 -82.0816 16302012 24907 40 26 81 174 Restricted 72.16 Metatranscriptome 3300008902 *Microbiome Permanent Draft Viral communities of boa constrictors and annulated tree boas from Steinhart Aquarium in San Francisco, USA Viral communities of annulated tree boas from Steinhart Aquarium in San Francisco, USA - CAS03_Kidney University of California, San Francisco 3300008902 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Reptilia Kidney Urinary system Unclassified Kidney 2639550 7733 0 0 0 0 SRX170624 0.0 Metatranscriptome 3300018985 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_020 - TARA_A100000761 (ERX1782416-ERR1711874) Canada's Michael Smith Genome Sciences Centre 3300018985 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 34.453 14.9538 535379274 1233983 121 74 577 706 0.0 Metatranscriptome 3300011041 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 17 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011041 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 25885757 63820 49 109 5395 704 Unrestricted 0.0 Metatranscriptome 3300052370 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_146 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052370 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 45303428 120617 190 118 583 653 Unrestricted 139.42 Metatranscriptome 3300020078 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300020078 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil corn rhizosphere 42.3948 -85.3738 678950089 1547366 580 3552 18455 38323 SRX4062847, SRX4062846 Unrestricted 0.0 Metatranscriptome 3300018544 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS683_3p0 J. Craig Venter Institute (JCVI) 3300018544 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 54.570232 11.332183 1319541 4777 10 8 260 370 0.0 Metatranscriptome 3300041847 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Rumen microbial community from a dairy cow Lincoln, Canterbury, New Zealand - R18_278 MetaT AgResearch, New Zealand, Mosgeil 3300041847 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen Bovine rumen -43.648506 172.343549 4721766 9397 168 82 1043 195 0.0 Metatranscriptome 3300012371 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_0_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012371 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 99332642 229159 146 921 6556 7505 Unrestricted 0.0 Metatranscriptome 3300010013 *Microbiome Permanent Draft Black Band Disease transitions Microbial communities of stony corals with Black-band disease (BBD) from Carrie Bow Cay Field Station, Belize; BBD Transitions coral #3 sample B3N University of Maryland 3300010013 Metatranscriptome Analysis IDBA-Tran v1.1.1 released per JGI data release policy No Yes juliemeyer@ufl.edu Julie Meyer No Host-associated Invertebrates Unclassified Cnidaria Unclassified marine 16.80288 -88.08213 48395722 116782 35 7 199 59 0.0 Metatranscriptome 3300013063 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES051 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013063 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 46.008 -89.701 49773015 105592 186 106 2091 2655 SRX3010814 Unrestricted 0.0 Metatranscriptome 3300017157 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from South Pacific Ocean in L1 medium with NH4Cl, 20 C, 32 psu salinity and 424 ?mol photons light - Stauroneis constricta CCMP 1120 (MMETSP1352) National Center for Genome Resources 3300017157 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine -0.7475 -126.03 25067432 34027 5 2 5 3 0.0 Metatranscriptome 3300004477 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 65 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004477 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 216687706 623049 4682 2865 19757 5845 Unrestricted 0.0 Metatranscriptome 3300058332 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - Treefall.Mar18.R2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300058332 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.5322 -110.7965 8-9 200293603 486411 21 0 163 1 Unrestricted 91.84 Metatranscriptome 3300036106 *Microbiome Permanent Draft Sediment microbial communities from coastal wetland in Texas, United States Metatranscriptome of sediment microbial communities from coastal wetland in Texas, United States - R0608U02 (Metagenome Metatranscriptome) (RiboZero) DOE Joint Genome Institute (JGI) 3300036106 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes bkielreese@disl.org Brandi Kiel Reese No Environmental Aquatic Wetlands Marine Sediment sediment 27.8973 -97.0409 40903894 84156 297 882 4555 2949 SRX9140142, SRX9140141 Unrestricted 0.0 Metatranscriptome 3300031089 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 2B (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031089 Metatranscriptome Analysis megahit v. 0.2.0 No Yes fmartin1954@me.com Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 576642285 1772110 13912 1182 31296 4940 SRX2752786 Unrestricted 0.0 Metatranscriptome 3300046581 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-76 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046581 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4383 -64.163 88923902 215802 785 26 1230 523 Unrestricted 23.7 Metatranscriptome 3300021267 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States - S.489 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021267 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simon.holly128@gmail.com Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary sediment 46.313 -123.997 32143958 72109 343 1062 4153 6347 SRX4017789 Unrestricted 0.0 Metatranscriptome 3300030578 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO105-VCO054SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030578 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.3029 -71.1332 540624420 1165437 86 74 2017 458 SRX4011317 Unrestricted 0.0 Metatranscriptome 3300032437 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - P4_Day56_Rep1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032437 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass growth medium 37.8406 -122.2901 9809951 19912 17 0 72 1 SRX7582826 Unrestricted 115.88 Metatranscriptome 3300017068 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater and 4nM iron, 19 C, 35 psu salinity and 603 ?mol photons light - Thalassiosira weissflogii CCMP 1010 (MMETSP1413) National Center for Genome Resources 3300017068 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.0 -65.0 29489933 30441 1 1 2 1 0.0 Metatranscriptome 3300010094 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_16_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010094 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 54179933 127702 166 616 19438 5882 Unrestricted 0.0 Metatranscriptome 3300042457 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_185 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300042457 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 173546435 393417 109 251 5118 1381 Unrestricted 62.93 Metatranscriptome 3300031619 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5_L6_16mM_3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031619 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 11566702 19757 0 1 0 3 SRX5783480 Unrestricted 56.79 Metatranscriptome 3300020116 *Microbiome Permanent Draft Metatranscriptome of freshwater microbial communities within cyanobacterial aggregates from lake Taihu, China Freshwater microbial communities within cyanobacterial aggregates from lake Taihu, China - 10_4_12:00 Beijing Novogene Bioinformatics Technology Co., Ltd 3300020116 Metatranscriptome Analysis Trinity v2.4 released by JGI data releasing policy No Yes hycai@niglas.ac.cn haiyuan cai No Environmental Aquatic Lake Freshwater Unclassified freshwater 31.3 120.11 21884101 60091 138 50 109 640 0.0 Metatranscriptome 3300037542 *Microbiome Permanent Draft Coastal seawater microbial communities from Marineland, Florida, United States Metatranscriptome of lab enriched marine microbial communities from Marineland, Florida, USA - SW_R2_TP1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037542 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes tbianchi@ufl.edu Thomas Bianchi No Environmental Aquatic Coastal Marine Unclassified seawater 29.6475 -82.3464 77434794 161917 103 20 229 135 SRX9144414 Unrestricted 59.98 Metatranscriptome 3300009588 *Microbiome Permanent Draft Anaerobic biogas reactor microbial communites from Washington, USA Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_A SIP RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009588 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes dacb@uw.edu David Beck No Engineered Bioreactor Unclassified Anaerobic Unclassified Anaerobic biogas reactor 47.6525 -122.3049 177860262 333993 17 79 10819 3277 SRX2525375 Unrestricted 0.0 Metatranscriptome 3300046244 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G05_2_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046244 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 77115561 124187 4 14 73 62 Restricted 151.49 Metatranscriptome 3300030935 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA7 SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030935 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 48.7184 6.3471 657060084 1897531 6507 3567 15863 9337 SRX3351952 Unrestricted 0.0 Metatranscriptome 3300049085 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_8 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300049085 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 67418771 150146 105 34 226 150 Unrestricted 24.15 Metatranscriptome 3300017343 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from North Sea in half strength K medium with seawater and selenite, 20 C, 26 psu salinity and 298 ?mol photons light - Azadinium spinosum 3D9 (MMETSP1038_2) National Center for Genome Resources 3300017343 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 57.0525 2.50056 82917654 111766 2 2 3 2 0.0 Metatranscriptome 3300061823 *Microbiome Permanent Draft Lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA Metatranscriptome of lab enriched soil microbial communities from Colorado State University Agricultural Experiment Station, Fort Collins, CO, USA - 35_hairyvetch_2_T0 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300061823 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jprenni@colostate.edu Jessica Prenni No Environmental Terrestrial Agricultural land Soil Unclassified Soil 40.6562 -104.9958 58827294 158402 191 192 1167 1283 Unrestricted 119.58 Metatranscriptome 3300032752 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Plim7_26May_deep (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032752 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 1031289577 1764232 14 5 39 176 SRX6411385 Unrestricted 0.0 Metatranscriptome 3300044480 *Microbiome Permanent Draft Sediment microbial communities from Colorado River basin floodplains, Colorado, United States Metatranscriptome of sediment microbial communities from Colorado River basin floodplains, Colorado, United States - eastriver_mt_177 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300044480 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes fendorf@stanford.edu Scott Fendorf No Environmental Terrestrial Floodplain Soil Sediment sediment 38.9229 -106.9499 161885495 376056 106 374 3412 1703 Unrestricted 55.82 Metatranscriptome 3300008787 *Microbiome Permanent Draft Microbial communities from wetland soil in Czech Republic Microbial communities from wetland soil in Czech Republic - R3_cDNA Friedrich Schiller University of Jena 3300008787 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Terrestrial Wetlands Soil Unclassified Wetland soil 50.14667 12.45083 74392006 349258 1529 772 20790 4234 0.0 Metatranscriptome 3300016829 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in L1 medium with NH4Cl, 24 C, 32 psu salinity and 504 ?mol photons light - Sarcinochrysis sp. CCMP770 (MMETSP1170) National Center for Genome Resources 3300016829 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 13.5 144.75 6474277 12149 48 1 66 4 0.0 Metatranscriptome 3300030870 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Seawater microbial communities from Saanich Inlet, British Columbia, Canada - DeepDOM_S8_0.2 metaT (Eukaryote Community Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300030870 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Oceanic Marine Unclassified Marine -17.0 -29.0 18920748 48651 1 2 94 101 SRX3195626 Unrestricted 0.0 Metatranscriptome 3300032078 *Microbiome Permanent Draft Determining the genomic basis for interactions between gut fungi and methanogenic archaea Metatranscriptome of enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen9, Rep 3 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032078 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes momalley@engineering.ucsb.edu Michelle O'Malley No Host-associated Mammals Large intestine Digestive system Fecal feces 34.4149 -119.841 8947643 17323 0 0 69 3 SRX6409915 Unrestricted 19.3 Metatranscriptome 3300008031 *Microbiome Permanent Draft Coral microbial communities from various locations to study host-microbial communication Coral microbial communities from Puerto Morelos, Mexico - Siderastrea C B metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300008031 Metatranscriptome Analysis megahit v. 0.2.0 No Yes momedinamunoz@gmail.com Monica _ Medina, Medina Medina No Host-associated Invertebrates Unclassified Cnidaria Unclassified Coral host 21.0853 -87.0617 354404521 592240 620 638 2364 1790 SRX3362766 Unrestricted 0.0 Metatranscriptome 3300002873 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 66 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002873 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes michael.pester@uni-konstanz.de, Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 9315214 26578 62 117 986 644 Unrestricted 0.0 Metatranscriptome 3300030913 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA6 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030913 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 59.997 10.7902 22304178 47923 186 244 1015 1260 SRX5351808 Unrestricted 0.0 Metatranscriptome 3300007319 *Microbiome Permanent Draft Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom. Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300007319 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sgtringe@lbl.gov, rmmckay@bgsu.edu Susannah Tringe, Robert M. McKay No Environmental Aquatic Lake Freshwater Unclassified Freshwater lake 41.69957 -83.2941 260981405 648048 1136 8928 3101 20745 SRX3195525 Unrestricted 0.0 Metatranscriptome 3300031461 *Microbiome Permanent Draft Plant litter microbial communities from East Loma Ridge, Irvine, California Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T8 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031461 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes jmartiny@uci.edu Jennifer Martiny No Environmental Terrestrial Unclassified Plant litter Unclassified plant litter 33.7417 -117.7042 38853556 75171 82 52 154 322 SRX5351937 Unrestricted 24.34 Metatranscriptome 3300019198 *Microbiome Permanent Draft Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series Estuarine microbial communities from the Columbia River estuary - R8.48AS metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019198 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes simonh@ohsu.edu Holly Simon No Environmental Aquatic Intertidal zone Marine Estuary Estuarine 46.232 -123.89 50464409 111199 201 319 961 9081 SRX3915474 Unrestricted 0.0 Metatranscriptome 3300006701 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Marine microbial communities from the Deep Atlantic Ocean - MP2916 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006701 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 29.5801 -23.4114 78878714 226924 350 837 1356 2103 SRX3327252 Unrestricted 0.0 Metatranscriptome 3300017228 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in CHM medium, at 25 C, 0 psu salinity and 642 ?mol photons light - Cryptomonas paramecium CCAP 977/2A (MMETSP0038_2) National Center for Genome Resources 3300017228 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 38677207 60609 1 11 1 4 0.0 Metatranscriptome 3300048682 *Microbiome Permanent Draft Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA Metatranscriptome of soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TR14 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048682 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes vanessa.bailey@pnnl.gov Vanessa Bailey No Engineered Artificial ecosystem Unclassified Soil microcosm Unclassified soil 46.3476 -119.2808 28877998 38520 11 2 22 23 Unrestricted 209.06 Metatranscriptome 3300016938 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine sediment eukaryotic communities from Great South Bay, New York in ATCC medium 790BY, 23 C, 25 psu salinity and 169 ?mol photons light - Aplanochytrium sp. PBS07 (MMETSP0954) National Center for Genome Resources 3300016938 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Sediment marine sediment 40.93 -72.5 21034256 22654 3 13 0 10 0.0 Metatranscriptome 3300019071 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_128 - TARA_N000002297 (ERX1782186-ERR1712067) Canada's Michael Smith Genome Sciences Centre 3300019071 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 0.008 -153.7022 17361031 40929 0 2 3 42 0.0 Metatranscriptome 3300030994 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_142 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030994 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92045766 -106.94845279 35346562 84598 283 192 1648 1205 SRX8133072 Unrestricted 19.76 Metatranscriptome 3300047420 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81957406-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047420 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 276104344 687157 513 309 2292 1729 Unrestricted 50.47 Metatranscriptome 3300008852 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_2068 Massachusetts Institute of Technology 3300008852 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 7386985 24699 22 12 450 766 0.0 Metatranscriptome 3300016870 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium in seawater w/o silicate, at 15 C, 31 psu salinity and 717 ?mol photons light - Amoebophrya sp. Ameob2 (MMETSP0795) National Center for Genome Resources 3300016870 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 26835830 26928 40 4 54 6 0.0 Metatranscriptome 3300035573 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - 8L (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035573 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4327 16.6819 153351627 326778 404 591 3504 2149 SRX8209133 Unrestricted 34.24 Metatranscriptome 3300030829 *Microbiome Permanent Draft Bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States Metatranscriptome of bulk soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030829 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes ELBrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Floodplain Soil Unclassified bulk soil 38.92029456 -106.94875775 157794290 364348 730 601 3319 2661 SRX8134996 Unrestricted 27.14 Metatranscriptome 3300021893 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S23 C1 B24 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021893 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 54.633279 -16.508962 105289694 189341 31 51 87 168 SRX5295800 Unrestricted 0.0 Metatranscriptome 3300043291 *Microbiome Permanent Draft Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States Metatranscriptome of freshwater picocyanobacteria communities from Lake Michigan, Michigan, United States - MI_BH16_T05 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043291 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mlcoleman@uchicago.edu Maureen Coleman No Environmental Aquatic Lake Freshwater Unclassified freshwater 43.6 -86.9166 120590101 254064 16 1 61 70 Unrestricted 19.33 Metatranscriptome 3300004496 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 105_HOW12 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004496 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 22753843 49892 207 5 534 14 SRX2780168 Unrestricted 0.0 Metatranscriptome 3300008869 *Microbiome Permanent Draft Microbial communities from dairy cow rumen, for metatranscriptome studies Microbial communities from dairy cow rumen, for metatranscriptome studies - 6180_control diet Aarhus University 3300008869 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals Stomach Digestive system Rumen Holstein breed cow rumen 20860238 101242 519 66 6808 242 SRX196412 0.0 Metatranscriptome 3300016913 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Pacific Ocean in L1 medium with NH4Cl, 24 C, 32 psu salinity and 487 ?mol photons light - Chrysocystis fragilis CCMP 3189 (MMETSP1165) National Center for Genome Resources 3300016913 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 13.5 144.75 16805365 20895 19 4 33 8 0.0 Metatranscriptome 3300030938 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A4_OS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300030938 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Temperate/submediterranean forest 42.0 1.0 492939362 1109491 468 291 6426 4212 SRX2999359 Unrestricted 0.0 Metatranscriptome 3300016994 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Arctic Ocean in K/2 medium with silica, 4 C, 35 psu salinity and 494 ?mol photons light - Minutocellus polymorphus RCC 2270 (MMETSP1322) National Center for Genome Resources 3300016994 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 71.18333333 -159.4166667 21526758 25627 4 2 5 2 0.0 Metatranscriptome 3300006558 *Microbiome Permanent Draft Development of a pipeline for high-throughput recovery of near-complete and complete microbial genomes from complex metagenomic datasets Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser CG13 metaT (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300006558 Metatranscriptome Analysis megahit v. 0.2.0 No Yes alexander.j.probst@gmail.com, jbanfield@berkeley.edu Alexander Probst, Jill Banfield No Environmental Aquatic Groundwater Deep subsurface Unclassified Groundwater 38.9383 -110.1342 24683362 77497 1350 2186 3752 4585 SRX3349045, SRX3349044 Unrestricted 0.0 Metatranscriptome 3300037021 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Growout1_13 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037021 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 381318621 812278 729 59 1321 955 SRX8821484 Unrestricted 24.94 Metatranscriptome 3300049088 *Microbiome Permanent Draft Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_20 (Metagenome Metatranscriptome) (v5.0 annotation) DOE Joint Genome Institute (JGI) 3300049088 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified Seawater 31.4764 -81.2409 209001638 466305 234 59 678 303 Unrestricted 19.61 Metatranscriptome 3300019134 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_142 - TARA_N000003100 (ERX1782286-ERR1712165) Canada's Michael Smith Genome Sciences Centre 3300019134 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 25.5921 -88.4388 163369794 349678 11 21 91 287 0.0 Metatranscriptome 3300059602 *Microbiome Permanent Draft Rhizosphere and hyphosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 15R_AD_T1_R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300059602 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes nuccio1@llnl.gov Erin Nuccio No Host-associated Plants Rhizosphere Roots Soil Rhizosphere soil 37.876 -122.267 11944073 31101 162 171 680 1282 Unrestricted 636.19 Metatranscriptome 3300021922 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from Norwegian Sea - 10m ARK-5M ARK-5-2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021922 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 73.0188 9.8566 102422411 223825 46 45 90 165 SRX3336645 Unrestricted 0.0 Metatranscriptome 3300041436 *Microbiome Draft Our Land and Water New Zealand Innovative Agricultural Microbiomes Perennial ryegrass leaf microbial community from Lincoln, Canterbury, New Zealand - RGL18_7 MetaT AgResearch, New Zealand, Mosgeil 3300041436 Metatranscriptome Analysis MegaHit v. 1.1.3 released by JGI data releasing policy No Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Plants Phylloplane/Leaf surface Phyllosphere Unclassified Dairy farm pasture -43.648506 172.343549 9125253 16133 139 203 464 430 0.0 Metatranscriptome 3300019195 *Microbiome Permanent Draft Roseovarius nubinhibens ISM and Alexandrium tamarense modeled microbial communities from the University of Georgia, USA Metatranscriptome of Roseovarius nubinhibens ISM and Alexandrium tamarense co-culture from University of Georgia, USA - T8_LowN_A metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019195 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes mmoran@uga.edu Mary Ann Moran No Engineered Modeled Unclassified Simulated communities (microbial mixture) Unclassified Laboratory simulated co-culture 33.933 -83.366 32144802 128271 0 1 257 20 SRX3161812 Unrestricted 0.0 Metatranscriptome 3300017225 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Sea of Japan in seawater with wheat grains, 20 C, 35 psu salinity and 681 ?mol photons light - Paramoeba aestuarina SoJaBio B1-5/56/2 (MMETSP0161_2) National Center for Genome Resources 3300017225 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 42.26722 136.71861 25331023 37737 26 9 52 6 0.0 Metatranscriptome 3300008883 *Microbiome Permanent Draft Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_3022 Massachusetts Institute of Technology 3300008883 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified Surface ocean water 5251494 17766 9 3 324 630 0.0 Metatranscriptome 3300016935 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater and 14nM iron, 19 C, 35 psu salinity and 606 ?mol photons light - Thalassiosira weissflogii CCMP 1010 (MMETSP1414) National Center for Genome Resources 3300016935 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 37.0 -65.0 30608801 31435 4 1 4 1 0.0 Metatranscriptome 3300047336 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - MES_7_E (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047336 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 22143098 41475 2 0 19 0 Restricted 304.94 Metatranscriptome 3300036411 *Microbiome Permanent Draft Forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States Metatranscriptome of forest soil microbial communities from the Harvard Forest LTER site, Massachusetts, United States - Harvard_soil_liu_24 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036411 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes xj.allen.liu@gmail.com Xiao-Jun Allen Liu No Environmental Terrestrial Temperate forest Soil Bulk soil soil 42.5315 -72.1899 106968014 247248 2 100 354 366 SRX8240724 Unrestricted 75.06 Metatranscriptome 3300031709 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean - PS103-2.R2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031709 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified marine -49.0129 2.8377 629311178 1095335 17 7 25 131 SRX5356439 Unrestricted 21.01 Metatranscriptome 3300048531 *Microbiome Permanent Draft Soil microbial communities from grasslands in Prosser, Washington, USA Metatranscriptome of soil microbial communities from grasslands in Prosser, Washington, USA - 81958f54-3e6b-11eb-b378-0242ac130002 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048531 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Jason.McDermott@pnnl.gov Jason McDermott No Environmental Terrestrial Unclassified Soil Grasslands Soil 46.25 -119.73 51872790 145162 39 43 218 288 Unrestricted 32.77 Metatranscriptome 3300019017 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_152 - TARA_N000002781 Canada's Michael Smith Genome Sciences Centre 3300019017 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 43.6904 -16.8544 761363756 1565250 23 49 59 457 0.0 Metatranscriptome 3300019160 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLA1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019160 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes baldrian@biomed.cas.cz Petr Baldrian No Environmental Terrestrial Unclassified Plant litter Unclassified Plant litter 49.043 13.6183 10189675 20798 27 338 853 1959 SRX3937011, SRX5229540 Unrestricted 0.0 Metatranscriptome 3300052329 *Microbiome Permanent Draft Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean Metatranscriptome of seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_2B2_100118_1910 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052329 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes wommack@dbi.udel.edu Eric Wommack No Environmental Aquatic Intertidal zone Marine Estuary Seawater 41.64971 -71.256087 89929654 218407 478 332 1390 1328 Unrestricted 164.49 Metatranscriptome 3300018872 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_025 - TARA_E500000196 (ERX1789513-ERR1719216) Canada's Michael Smith Genome Sciences Centre 3300018872 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 39.4046 19.3886 229086984 556250 2 47 6 337 0.0 Metatranscriptome 3300006850 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_RNA (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006850 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 203082442 629980 1801 8151 5462 21299 SRX2522111 Unrestricted 0.0 Metatranscriptome 3300050387 *Microbiome Permanent Draft Adjacent soil, biofilm, and endolithic microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA Metatranscriptome of adjacent soil microbial communities from hotspring runoff channel in Yellowstone National Park, Wyoming, USA - Soil_T2_2 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300050387 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes debash.bhattacharya@gmail.com Debashish Bhattacharya No Environmental Aquatic Runoff channel Thermal springs Unclassified Adjacent soil 44.7986 -110.7207 187262450 322818 21 16 86 64 Unrestricted 128.08 Metatranscriptome 3300012757 *Microbiome Permanent Draft Freshwater microbial communities from oligotrophic, dystrophic, and eutrophic lakes in Wisonsin, USA Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES161 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012757 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tmcmahon@engr.wisc.edu Katherine McMahon No Environmental Aquatic Lake Freshwater Unclassified Freshwater 43.099 -89.405 114871014 244538 229 310 2650 5082 SRX3527341 Unrestricted 0.0 Metatranscriptome 3300026513 *Microbiome Permanent Draft Seawater microbial communities from Monterey Bay, California, United States Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 51R (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026513 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes mmoran@uga.edu Mary Ann Moran No Environmental Aquatic Coastal Marine Unclassified seawater 36.8313 -121.9047 289065648 582032 209 45 282 482 SRX4795994 Unrestricted 24.1 Metatranscriptome 3300031054 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 1C (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031054 Metatranscriptome Analysis megahit v. 0.2.0 No Yes fmartin1954@me.com Francis M. Martin No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 35.8911 -106.2978 354602212 1072930 15297 2926 35591 8996 SRX2752752 Unrestricted 0.0 Metatranscriptome 3300036496 *Microbiome Permanent Draft Seawater microbial communities from the Antarctic Ocean Metatranscriptome of seawater microbial communities from the Indian Ocean - Omics04_030518 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036496 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wilhelm@utk.edu Steven Wilhelm No Environmental Aquatic Pelagic zone Marine Unclassified seawater -46.5954 142.0314 184601696 400184 723 68 1353 1521 SRX8834157 Unrestricted 21.85 Metatranscriptome 3300009832 *Microbiome Permanent Draft Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 2, surface; RNA IDBA-UD Marine Biological Laboratory 3300009832 Metatranscriptome Analysis IDBA-UD 3.2 released per JGI data release policy No Yes emily@greatpondfoundation.org Emily Reddington No Environmental Aquatic Pond Freshwater Unclassified meromictic pond 41.548517 -70.622961 7.56 1961810 6055 118 97 777 210 0.0 Metatranscriptome 3300010106 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_0_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010106 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 67300922 153422 81 660 3663 5953 Unrestricted 0.0 Metatranscriptome 3300048099 *Microbiome Permanent Draft Soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA Metatrasiptome of soil microbial communities from artificial tropical rainforest in Tucson, Arizona, USA - UA_B2_WALD P15SSC1_190912_c (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300048099 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes Malak.m.tfaily@gmail.com Malak Tfaily No Environmental Terrestrial Unclassified Soil Tropical rainforest Soil 32.5788 -110.8509 83127360 200104 177 328 2000 1831 SRX20649823 Unrestricted 128.03 Metatranscriptome 3300052775 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - DRIP_88 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052775 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Unclassified Soil Unclassified Soil 38.992973 -123.067448 57635593 152695 237 170 792 960 Unrestricted 84.97 Metatranscriptome 3300007219 *Microbiome Permanent Draft Freshwater and sediment microbial communities from various areas in North America, analyzing microbe dynamics in response to fracking Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaT_SC_2013 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300007219 Metatranscriptome Analysis megahit v. 0.2.0 No Yes reginalamendella@gmail.com Regina Lamendella No Environmental Aquatic Creek Freshwater Sediment watersheds 41.5935 -78.5142 94777508 317870 6849 12034 21692 23122 SRX3345472 Unrestricted 0.0 Metatranscriptome 3300017547 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in ATCC 1651 MA medium w/o phosphatidylcholine, 4 C, 30 psu salinity and 145 ?mol photons light - Anophryoides haemophila AH6 (MMETSP1018) (SRX549049-SRR1294435) National Center for Genome Resources 3300017547 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 43.51667 -65.6 1529906 2605 0 1 1 1 0.0 Metatranscriptome 3300022207 *Microbiome Permanent Draft Characterization of microbial community from Mariana Back Arc Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Burke_FS924_RNA_SIP 150_kmer Marine Biological Laboratory 3300022207 Metatranscriptome Analysis IDBA-UD 1.1.3 Trembath-Reichert et al. ?Active subseafloor microbial communities from Mariana back-arc venting fluids share metabolic strategies across different thermal niches and taxa?, ISMEJ 2019 No Yes eliztr@gmail.com Elizabeth Trembath-Reichert No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Hydrothermal vent fluids 18.182568 144.719893 841932 2215 359 0 871 5 0.0 Metatranscriptome 3300017328 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from South Atlantic Ocean in Standard Aquil medium with 100 uM EDTA, 4 C, 32 psu salinity and 112 ?mol photons light - Fragilariopsis kerguelensis L26-C5 (MMETSP0735) National Center for Genome Resources 3300017328 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -48.0 -16.0 44458089 62914 7 1 11 2 0.0 Metatranscriptome 3300029599 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Glu2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029599 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 44.11 -88.23 47609125 93082 10 13 340 43 SRX5356130 Unrestricted 70.88 Metatranscriptome 3300049551 *Microbiome Permanent Draft Panicgrass rhizosphere soil microbial communities from growth chamber in LBNL, Berkeley, California, USA Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049551 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes esinger@lbl.gov Esther Singer No Host-associated Plants Rhizosphere Roots Soil Panicgrass rhizosphere 37.851667 -122.294444 96319767 232337 154 88 776 561 Unrestricted 107.85 Metatranscriptome 3300017586 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 18 C, 32 psu salinity and 532 ?mol photons light - Chaetoceros affinis CCMP 159 (MMETSP0088) (SRX549060-SRR1294446) National Center for Genome Resources 3300017586 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 4141442 8324 2 1 4 1 0.0 Metatranscriptome 3300030575 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO747-VDE050SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030575 Metatranscriptome Analysis MEGAHIT v. 1.1.2 No Yes francis.martin@inrae.fr; fmartin@nancy.inra.fr Francis M. Martin; Francis M. MARTIN No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.296 -71.1763 368211378 787042 91 91 1523 563 SRX4391426 Unrestricted 0.0 Metatranscriptome 3300017065 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium (10X Nitrate, 7X phosphorous), at 30 C, 38 psu salinity and 508 ?mol photons light - Tetraselmis striata LANL1001 (MMETSP0820) National Center for Genome Resources 3300017065 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 35727166 40632 1 2 5 1 0.0 Metatranscriptome 3300015176 *Microbiome Permanent Draft Seawater microbial communities from hydrothermal vent in East China Sea, Taiwan, China Seawater microbial communities from hydrothermal vent in East China Sea, Taiwan, China - gui-2014 surface metaT BGI Tech Solutions Co., Ltd. 3300015176 Metatranscriptome Analysis Trinty released by JGI data releasing policy No Yes zhanglianbao425@outlook.com lin zhang No Environmental Aquatic Hydrothermal vents Marine Unclassified seawater 25.0 128.0 12450632 26850 26 150 173 876 0.0 Metatranscriptome 3300018988 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_098 - TARA_N000001580 (ERX1782315-ERR1711974) Canada's Michael Smith Genome Sciences Centre 3300018988 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -25.826 -111.7294 558587427 1266877 95 119 349 1021 0.0 Metatranscriptome 3300013054 *Microbiome Permanent Draft Lignin-adapted enriched soil microbial communities from Emeryville, California, USA Enriched backyard soil microbial communities from Emeryville, California, USA - RNA 5th pass 30_C BE-Lig BY (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300013054 Metatranscriptome Analysis megahit v. 1.0.6 No Yes jmgladden@lbl.gov John Gladden No Environmental Terrestrial Unclassified Soil Unclassified soil 37.83 -122.29 38724163 65487 12 52 149 2403 SRX4809049 Unrestricted 0.0 Metatranscriptome 3300020075 *Microbiome Permanent Draft Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300020075 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes tiedjej@msu.edu James Tiedje No Host-associated Plants Rhizosphere Roots Soil corn rhizosphere 42.3948 -85.3738 492487678 1106011 551 2501 9034 29532 SRX4062858, SRX4062857 Unrestricted 0.0 Metatranscriptome 3300030657 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 14_T1F_3DEL1 developmental time series (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030657 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 57215409 79027 25 24 1062 505 SRX4646344 Unrestricted 0.0 Metatranscriptome 3300006696 *Microbiome Permanent Draft Deep ocean microbial communities from the Global Malaspina Expedition Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP2498 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006696 Metatranscriptome Analysis megahit v. 0.2.0 No Yes sacinas@icm.csic.es Silvia G. Acinas No Environmental Aquatic Oceanic Marine Unclassified Deep ocean 17.43 -59.83 73533930 213204 2198 1616 5448 4593 SRX3299176 Unrestricted 0.0 Metatranscriptome 3300022503 *Microbiome Permanent Draft Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-O (Metagenome Metatranscriptome) (v2) (version 2) DOE Joint Genome Institute (JGI) 3300022503 Metatranscriptome Analysis MEGAHIT v. 1.1.1-2-g02102e1 No Yes jeffb@bio.umass.edu Jeffrey Blanchard No Environmental Terrestrial Temperate forest Soil O horizon/Organic soil 42.481016 -72.178343 49621154 107605 679 893 13513 6158 SRX4402849 Unrestricted 0.0 Metatranscriptome 3300046632 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-201 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046632 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4199 -64.1151 225717551 530566 507 28 902 500 Unrestricted 19.61 Metatranscriptome 3300017243 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from Gulf of California (Sea of Cortes) in ASW medium, resuspended in ASW w/o silicate, 20 C and 205 ?mol photons light - Extubocellulus spinifer CCMP 396 (MMETSP0697) National Center for Genome Resources 3300017243 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine 31.3172 -113.56 42086624 40220 6 9 6 21 0.0 Metatranscriptome 3300037716 *Microbiome Permanent Draft Phototrophic mat microbial and viral communities from various hot springs in Yellowstone National Park, Wyoming, United States Metatranscriptome of photosynthetic mat microbial communities from Mushroom Spring, YNP, Wyoming, United States - 20090729 2210 sample R5cd (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037716 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes dbhaya@stanford.edu Devaki Bhaya No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats hot spring phototrophic mat 44.5387 -110.798 81359474 162681 3 0 71 0 SRX9378964 Unrestricted 257.54 Metatranscriptome 3300017090 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine eukaryotic communities from English Channel in K medium with Eastern Pacific seawater w/o silicate, 21 C, 35 psu salinity and 451 ?mol photons light - Polyblepharides amylifera CCMP 720 (MMETSP1081) National Center for Genome Resources 3300017090 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Oceanic Marine Unclassified marine 50.36 -4.15 23537168 31647 9 9 11 8 0.0 Metatranscriptome 3300002342 *Microbiome Permanent Draft Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI - B_15min_Anaerobic (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300002342 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes tmcmahon@cae.wisc.edu, tmcmahon@engr.wisc.edu; tmcmahon@cae.wisc.edu Sludge Phage users, Katherine McMahon; Trina McMahon Yes 20148930, 26555245 Engineered Bioreactor Anaerobic-Aerobic EBPR Sludge Wastewater treatment 43.078418 -89.386482 150319573 271450 15 71 68 199 SRX2554563 Unrestricted 0.0 Metatranscriptome 3300032460 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day14_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032460 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 40203945 68582 12 0 30 2 SRX7582833 Unrestricted 199.04 Metatranscriptome 3300018586 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_137 - TARA_N000002942 (ERX1782243-ERR1712114) Canada's Michael Smith Genome Sciences Centre 3300018586 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 14.2005 -116.7031 41631403 92509 0 5 4 60 0.0 Metatranscriptome 3300036150 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 5CT15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036150 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 57586905 110683 440 1514 2174 5991 SRX8379434 Unrestricted 50.97 Metatranscriptome 3300010133 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_8_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010133 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 88746371 208287 75 582 4973 5598 Unrestricted 0.0 Metatranscriptome 3300036509 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8SP15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036509 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 185300226 386375 250 1540 1145 5000 SRX8379680 Unrestricted 33.47 Metatranscriptome 3300006390 *Microbiome Permanent Draft Aqueous microbial communities from the Delaware River/Bay and Chesapeake Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_RNA2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006390 Metatranscriptome Analysis megahit v. 0.2.0 No Yes bcampb7@clemson.edu Barbara J Campbell, Barbara Campbell No Environmental Aquatic Coastal Marine Unclassified Aqueous 39.283 -75.3633 170937741 561917 1844 6731 3977 15685 SRX3196458 Unrestricted 0.0 Metatranscriptome 3300031165 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_L6_16mM_2 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031165 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 24810956 38706 2 1 1 1 SRX6408408 Unrestricted 65.81 Metatranscriptome 3300003726 *Microbiome Permanent Draft Soil microbial communities from four geographically distinct crusts in the Colorado Plateau and Sonoran desert Soil microbial communities from Colorado Plateau and Sonoran desert - Soil Crust after wet up 3B (Custom Analysis) DOE Joint Genome Institute (JGI) 3300003726 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes elbrodie@lbl.gov Eoin Brodie No Environmental Terrestrial Desert Soil Unclassified Soil 38.42 -109.4099 10321741 22959 424 179 1269 415 Unrestricted 0.0 Metatranscriptome 3300051594 *Microbiome Permanent Draft Soil microbial communities from Hopland Research and Extension Center, CA, USA Metatranscriptome of soil microbial communities from Hopland Research and Extension Center, CA, USA - 24_100_16 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300051594 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes pettridge2@llnl.gov Jennifer Pett-Ridge No Environmental Terrestrial Agricultural land Soil Bulk soil soil 38.992973 -123.067448 98278248 232798 147 212 963 1166 Unrestricted 114.13 Metatranscriptome 3300017381 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of coastal eukaryotic communities from Indian River Bay, Delaware, USA in L1 medium, 22 C, 34 psu salinity and 709 ?mol photons light - Prorocentrum minimum CCMP 2233 (MMETSP0268) National Center for Genome Resources 3300017381 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Unclassified coastal 38.59 -75.1 74445093 96462 7 1 14 1 0.0 Metatranscriptome 3300030689 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 31_T1F_3236KB8 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030689 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 94770383 124180 1 4 24 378 SRX4646416 Unrestricted 0.0 Metatranscriptome 3300034674 *Microbiome Permanent Draft Soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0R3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300034674 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes paul.dijkstra@nau.edu Paul Dijkstra No Environmental Terrestrial Agricultural land Soil Unclassified soil 39.6475 -79.9369 92886127 208696 214 944 6825 5414 SRX7520343 Unrestricted 30.4 Metatranscriptome 3300018720 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_066 - TARA_N000000793 (ERX1789656-ERR1719302) Canada's Michael Smith Genome Sciences Centre 3300018720 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -34.8986 18.03 143378495 326100 5 19 6 224 0.0 Metatranscriptome 3300005241 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0800_T MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005241 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 42743452 100350 32 2 230 8 SRX2521570, SRX2521571 Unrestricted 0.0 Metatranscriptome 3300012763 *Microbiome Permanent Draft Freshwater microbial communities from northern lakes of Canada to study carbon cycling Freshwater microbial communities from Lake Simoncouche, Canada - S_140108_E_mt (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300012763 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes david.walsh@concordia.ca David Walsh No Environmental Aquatic Lake Freshwater Unclassified Freshwater 48.2311 -71.2508 124278505 262334 511 321 5562 6384 SRX3015300 Unrestricted 0.0 Metatranscriptome 3300066461 *Microbiome Permanent Draft Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA Metatranscriptome of woodchip biofilm microbial communities from lab scale WBRs in New York, USA - hf_cs_p2_t10_h100_prok (Metagenome Metatranscriptome) (version 2) DOE Joint Genome Institute (JGI) 3300066461 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mcr239@cornell.edu Matthew Reid No Engineered Bioreactor Woodchip Bioreactor (WBR) Denitrification Woodchip biofilm Woodchip biofilm 42.44568 -76.470892 210975677 481819 55 62 672 303 Unrestricted 0.0 Metatranscriptome 3300006365 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1100 MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300006365 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.963 -110.715 104333861 235318 7032 306 19756 627 SRX2521850 Unrestricted 0.0 Metatranscriptome 3300031190 *Microbiome Permanent Draft Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture in Seattle, Washington, USA Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_D6_0mM_1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300031190 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes racat@u.washington.edu Rose Ann Cattolico No Host-associated Algae Unclassified Haptophytes Unclassified defined medium 47.6519 -122.3113 8459441 14015 3 1 0 3 SRX5783605 Unrestricted 37.51 Metatranscriptome 3300003681 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_48_BLW_10 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300003681 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified Marine 36.25 -122.2099 58204606 146930 106 22 283 526 SRX2570283 Unrestricted 0.0 Metatranscriptome 3300010097 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_24_2 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010097 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 56733820 133546 86 470 18639 4570 Unrestricted 0.0 Metatranscriptome 3300016976 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine sediment eukaryotic communities from Atlantic Ocean in seawater with wheat grains, 20 C, 35 psu salinity and 137 ?mol photons light - Vannella sp. CB-2014 DIVA3 518/3/11/1/6 (MMETSP0166) National Center for Genome Resources 3300016976 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Coastal Marine Sediment marine sediment -35.98833 -49.0175 19114443 24547 6 7 11 8 0.0 Metatranscriptome 3300032434 *Microbiome Permanent Draft Lab enriched sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States Metatranscriptome of lab enriched sorghum-adapted microbial communities from California, United States - SM_Day7_7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032434 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes SWSinger@lbl.gov Steven W. Singer No Engineered Bioreactor Aerobic SSF (Solid state fermentation) Biomass plant biomass 37.8406 -122.2901 33951488 55889 8 0 32 0 SRX6857449 Unrestricted 247.3 Metatranscriptome 3300052443 *Microbiome Permanent Draft Mesocosm of blue grama litter inoculated with varying soil microbial communities from Los Alamos National Lab, New Mexico, USA Metatranscriptome of mesocosm microbial communities from Los Alamos National Lab, New Mexico, USA - 86-S41Day7 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052443 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mkroeger@lanl.gov Marie Kroeger No Engineered Artificial ecosystem Unclassified Mesocosm Unclassified Mesocosm 35.88 -106.3031 88912134 171212 45 2 153 23 Unrestricted 108.87 Metatranscriptome 3300010919 *Microbiome Permanent Draft Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific Ocean Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS4_55_TP1_12H Marine Biological Laboratory 3300010919 Metatranscriptome Analysis CLC genomics wb7 released by JGI data releasing policy No Yes cfortunato@gmail.com Caroline Fortunato No Environmental Aquatic Hydrothermal vents Marine Diffuse flow Diffuse hydrothermal flow volcanic vent 45.922741 -129.988104 1868091 6532 18 6 39 7 0.0 Metatranscriptome 3300019101 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_041 - TARA_N000000077 (ERX1782274-ERR1712235) Canada's Michael Smith Genome Sciences Centre 3300019101 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 14.5741 69.9988 107919016 242912 4 17 13 156 0.0 Metatranscriptome 3300037650 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Aug_N3_C1_D3_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037650 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3776 -82.512 73582842 150994 358 1182 3265 3149 SRX9385683 Unrestricted 205.33 Metatranscriptome 3300004474 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 60 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004474 Metatranscriptome Analysis megahit v. 0.2.0 No Yes michael.pester@uni-konstanz.de, michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 168471293 528903 8354 3531 30663 7939 Unrestricted 0.0 Metatranscriptome 3300030663 *Microbiome Permanent Draft Metatranscriptome of upside-down jellyfish Cassiopea xamachana infected with symbiotic dinoflagellate Symbiodinium from Hawaii, USA Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 37_T2E_3212EL1 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030663 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes zhongwang@lbl.gov Zhong Wang No Host-associated Invertebrates Unclassified Cnidaria Unclassified Jellyfish 40.7982 -77.8599 102620777 118684 0 2 13 255 SRX4646563 Unrestricted 0.0 Metatranscriptome 3300017154 *Microbiome Permanent Draft The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (MMETSP) Metatranscriptome of marine bacterial communities from South Pacific Ocean in f/2 medium with natural seawater, no silicate, 21 C, 35 psu salinity and 467 ?mol photons light - Rhodopseudomonas sp. CCMP768 (MMETSP1389) National Center for Genome Resources 3300017154 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified marine -39.0 -176.0 25128758 47503 1 8 4 8 0.0 Metatranscriptome 3300032519 *Microbiome Permanent Draft Seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway Metatranscriptome of seawater microbial communities from Espelandsvegen Fjord, Bergen, Norway - Red3_22May_surf (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032519 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes thamat@marine.rutgers.edu Kim Thamatrakoln No Environmental Aquatic Fjord Marine Unclassified seawater 60.2696 5.2187 1167924510 1973166 9 3 24 146 SRX6410044 Unrestricted 18.08 Metatranscriptome 3300010115 *Microbiome Permanent Draft Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_16_1 metaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300010115 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes jbanfield@berkeley.edu Jill Banfield No Environmental Terrestrial Grasslands Soil Unclassified Grasslands soil 39.7181 -123.6527 71465524 168094 47 388 6740 3761 Unrestricted 0.0 Metatranscriptome 3300032036 *Microbiome Permanent Draft Rumen microbial communities from sheep, dairy cows and beef cattle from various locations Metatranscriptome of bovine rumen microbial communities from UC Davis, California, United States - 2_2465_0518 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300032036 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes graeme.attwood@agresearch.co.nz Graeme Attwood No Host-associated Mammals Stomach Digestive system Rumen rumen 38.5357 -121.7593 546793237 1075860 2 23 146 174 SRX5812531 Unrestricted 14.78 Metatranscriptome 3300052963 *Microbiome Permanent Draft Sediment microbial communities from various environments and locations in Europe Metatranscriptome of sediment microbial communities from Baltic Sea, Sweden - H5D5S (Metagenome Metatranscriptome) (IMG v5.1) (version 2) DOE Joint Genome Institute (JGI) 3300052963 Metatranscriptome Analysis megahit v. 2021-07-06 16:04:36 - MEGAHIT v1.2.9 released based on JGI ITS Yes Yes o.eyice@qmul.ac.uk Ozge Eyice No Environmental Aquatic Sediment Marine Unclassified Sediment 59.0386 17.7277 407215640 942262 40 38 1506 233 SRX20998534, SRX20998533 Unrestricted 0.0 Metatranscriptome 3300018547 *Microbiome Permanent Draft Metatranscriptome of marine microbial communities from Baltic Sea Metatranscriptome of marine microbial communities from Baltic Sea - GS675_0p1 J. Craig Venter Institute (JCVI) 3300018547 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 62.09708 18.5427 2601378 8994 3 3 314 302 0.0 Metatranscriptome 3300018921 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_153 - TARA_N000002809 (ERX1789458-ERR1719341) Canada's Michael Smith Genome Sciences Centre 3300018921 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine 44.0852 -16.5645 494866413 787025 0 18 4 91 0.0 Metatranscriptome 3300002660 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF103 (Metagenome Metatranscriptome, Counting Only) DOE Joint Genome Institute (JGI) 3300002660 Metatranscriptome Analysis rnnotator v. 3.3.1 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.532967 -72.180244 6397062 17768 129 502 650 2308 SRX2014396 Unrestricted 0.0 Metatranscriptome 3300008784 *Microbiome Permanent Draft Microbial communities from wetland soil in Czech Republic Microbial communities from wetland soil in Czech Republic - M1_cDNA Friedrich Schiller University of Jena 3300008784 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Terrestrial Wetlands Soil Unclassified Wetland soil 50.14667 12.45083 65153897 298691 840 90 11349 871 0.0 Metatranscriptome 3300021353 *Microbiome Permanent Draft Marine archaeal communities from Monterey Bay, CA, that are ammonia-oxidizing Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021353 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes caf@stanford.edu Christopher Francis No Environmental Aquatic Intertidal zone Marine Unclassified seawater 36.6907 -122.3448 491747664 1079788 517 215 20046 8624 SRX4010498 Unrestricted 0.0 Metatranscriptome 3300038152 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Jul_M1_C1_D6_A (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038152 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 40905073 90086 288 212 6208 657 SRX9390233 Unrestricted 267.61 Metatranscriptome 3300011052 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 75 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011052 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 40053835 94003 85 175 6926 1137 Unrestricted 0.0 Metatranscriptome 3300019209 *Microbiome Permanent Draft Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from various locations Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW3_MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300019209 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes wtliu@illinois.edu Wen-Tso Liu No Engineered Bioreactor Digestate Anaerobic Unclassified activated sludge 35.92 139.63 117717258 269937 68 249 29853 1558 SRX4809119 Unrestricted 0.0 Metatranscriptome 3300037773 *Microbiome Permanent Draft Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - s103 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300037773 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes colin.averill@usys.ethz.ch Colin Averill No Engineered Artificial ecosystem Soil Plant growth chamber Unclassified soil 36.0 -78.0 23679517 35723 28 58 252 482 SRX9169900 Unrestricted 150.52 Metatranscriptome 3300008392 *Microbiome Permanent Draft Human fecal viral communities from Vellore, India Human fecal viral communities from Vellore, India - 34710 J. Craig Venter Institute (JCVI) 3300008392 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Host-associated Mammals: Human Large intestine Digestive system Fecal Human gut 12.920219 79.133306 145340 724 0 0 3 0 0.0 Metatranscriptome 3300035591 *Microbiome Permanent Draft Marin sediment microbial communities from Baltic Sea, Sweden Metatranscriptome of marine sediment microbial communities from Baltic Sea, Sweden - May B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300035591 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes samuel.hylander@lnu.se Samuel Hylander No Environmental Aquatic Coastal Marine Sediment sediment 57.4211 16.6688 205204812 437386 363 643 1936 2358 SRX8209555 Unrestricted 25.83 Metatranscriptome 3300046164 *Microbiome Permanent Draft Soil microbial communities from peatland in Alberta, Canada Metatranscriptome of soil microbial communities from peatland in Alberta, Canada - SB-NH 20-30 cm (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046164 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mstrack@uwaterloo.ca Maria Strack No Environmental Terrestrial Wetlands Soil Unclassified Soil 53.4768 -114.8775 8123517 14793 97 116 243 489 Unrestricted 461.67 Metatranscriptome 3300004509 *Microbiome Permanent Draft Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 110_LOW13 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004509 Metatranscriptome Analysis megahit v. 0.2.0 No Yes milachis@u.washington.edu Lumila Chistoserdova, Ludmila Chistoserdova No Environmental Aquatic Lake Freshwater Sediment Freshwater 48.3807 -122.1599 8768992 17678 64 7 254 12 SRX2780191 Unrestricted 0.0 Metatranscriptome 3300046247 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - G10_2_B (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046247 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 46506683 79307 6 40 141 150 Restricted 340.19 Metatranscriptome 3300026393 *Microbiome Permanent Draft Enriched soil aggregate microbial communities from Iowa State university to study microbial drivers of carbon cycling Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0917-MT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300026393 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kirsten.hofmockel@pnnl.gov Kirsten Hofmockel No Environmental Terrestrial Unclassified Soil Unclassified enriched soil aggregate 42.0 -93.0 78605407 133888 27 4 8 48 SRX4796192 Unrestricted 58.11 Metatranscriptome 3300052736 *Microbiome Permanent Draft Mesophilic digester sludge microbial communities from Bavarian biogas plants, Germany Metatranscriptome of mesophilic digester sludge microbial communities from biogas plant in Weichs, Bavaria, Germany - PB8_MT_290118 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300052736 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes veronika.flad@lfl.bayern.de Veronika Flad No Engineered Bioreactor Sludge Anaerobic Unclassified Mesophilic digester sludge 48.39537892 11.44760761 14825193 35198 20 9 457 16 Unrestricted 0.0 Metatranscriptome 3300021871 *Microbiome Permanent Draft Marine eukaryotic phytoplankton communities from the Norwegian Sea, Arctic and Atlantic Ocean Metatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S2 C18 B9 (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300021871 Metatranscriptome Analysis rnnotator v. 3.3.2 No Yes t.mock@uea.ac.uk Thomas Mock No Environmental Aquatic Oceanic Marine Unclassified Marine 31.219323 -14.870404 22891770 68381 144 69 301 295 SRX5204098 Unrestricted 0.0 Metatranscriptome 3300011069 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 19 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011069 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes Michael.Pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 69815778 163712 105 237 11453 1221 Unrestricted 0.0 Metatranscriptome 3300004118 *Microbiome Permanent Draft Forest soil microbial communities from Harvard Forest Long Term Ecological Research (LTER) site in Petersham, MA, for long-term soil warming studies Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF208 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300004118 Metatranscriptome Analysis megahit v. 0.2.0 No Yes jeffb@bio.umass.edu, jlb@umass.edu; deangelis@microbio.umass.edu Jeffrey Blanhard, Jeffrey Blanchard; Kristen M. DeAngelis PhD No Environmental Terrestrial Temperate forest Soil Unclassified Forest soil 42.531427 -72.189946 104269991 376696 1448 605 5098 2295 SRX2013858 Unrestricted 0.0 Metatranscriptome 3300011370 *Microbiome Permanent Draft Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E36 Metatranscriptome (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300011370 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes kpeay@stanford.edu Kabir Peay No Host-associated Mammals Large intestine Digestive system Fecal Fecal 38.04 -122.5 121357346 228265 39 47 2479 316 SRX3007453, SRX2526856 Unrestricted 0.0 Metatranscriptome 3300038445 *Microbiome Permanent Draft Marine sediment microbial communities off the coast of San Francisco, CA, United States Metatranscriptome of marine sediment microbial communities off the coast of San Francisco, CA, United States - OC_2000m_C6_0cm5cm (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038445 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes aparada@stanford.edu Alma Parada No Environmental Aquatic Oceanic Marine Sediment sediment 36.9138 -121.159 174654764 367388 446 2034 5551 8297 SRX9141345 Unrestricted 38.64 Metatranscriptome 3300043273 *Microbiome Permanent Draft Sediment microbial communities from hot springs in Yellowstone Nat. Park, Wyoming, USA Metatranscriptome of sediment microbial communities from hot spring in Yellowstone Nat. Park, Wyoming, USA - FS5.Oct18.R1 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043273 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes beckymueller@gmail.com Rebecca Mueller No Environmental Aquatic Hot (42-90C) Thermal springs Sediment Sediment 44.5326 -110.7972 8-9 60162463 118339 56 2 461 1 SRX10105720 Unrestricted 40.04 Metatranscriptome 3300038169 *Microbiome Permanent Draft Wetland microbial communities from Old Woman Creek delta, Ohio, USA Metatranscriptome of soil microbial communities from Old Woman Creek estuary, Ohio, United States - Sept_M1_C1_D1_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300038169 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes kwrighton@gmail.com Kelly Wrighton No Environmental Aquatic Wetlands Freshwater Soil soil 41.3777 -82.5117 24483220 43144 454 1381 9013 4068 SRX9390613 Unrestricted 93.06 Metatranscriptome 3300029648 *Microbiome Permanent Draft Marine microbial communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_6_6_120m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300029648 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 10863539 22318 30 1 1036 16 SRX5338448 Unrestricted 24.59 Metatranscriptome 3300011083 *Microbiome Permanent Draft Peatlands soil microbial communities from Germany and Austria, that are sulfate reducing Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 45 (Metagenome Metatranscriptome) (version 2) (version 2) DOE Joint Genome Institute (JGI) 3300011083 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes michael.pester@dsmz.de Michael Pester No Environmental Terrestrial Wetlands Soil Peat Peatlands soil 50.13 11.88 103458937 240536 110 287 10510 1833 Unrestricted 0.0 Metatranscriptome 3300030997 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3B (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030997 Metatranscriptome Analysis megahit v. 0.2.0 No Yes francis.martin@inrae.fr; dcullen@wisc.edu Francis M. Martin; Daniel Cullen No Environmental Terrestrial Temperate forest Soil Bulk soil Forest soil 45.7589 -113.9119 683800794 2144475 25216 645 40844 1607 SRX3342746 Unrestricted 0.0 Metatranscriptome 3300030536 *Microbiome Permanent Draft Forest soil microbial communities from France, Sweden, Spain and USA, for metatranscriptomics studies Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE043SO (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300030536 Metatranscriptome Analysis MEGAHIT v. 1.0.6 No Yes francis.martin@inrae.fr Francis M. Martin No Environmental Terrestrial Boreal forest/Taiga Soil Bulk soil soil 47.2937 -71.1771 133576210 306233 37 53 1262 638 SRX4391328, SRX4391329 Unrestricted 0.0 Metatranscriptome 3300001215 *Microbiome Permanent Draft Estuarine microbial mat communities from Elkhorn Slough, Moss Landing, CA, that are H2-evolving and photosynthetic Estuarine microbial mat communities from Elkhorn Slough, Moss Landing, CA, USA - CR3A Metatranscriptome (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300001215 Metatranscriptome Analysis No Yes swsinger@lbl.gov, SWSinger@lbl.gov Steven Willian Singer, Steven W. Singer Yes 23190731 Environmental Aquatic Intertidal zone Marine Estuary Estuarine 36.8 -121.8 66543195 175503 5 9 30 38 SRX3311451 Unrestricted 0.0 Metatranscriptome 3300028620 *Microbiome Permanent Draft Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_80m (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300028620 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes shallam@interchange.ubc.ca Steven Hallam No Environmental Aquatic Saline Non-marine Saline and Alkaline Unclassified saline water 49.68 -124.009 135356152 265566 228 34 3662 210 SRX5337944 Unrestricted 40.58 Metatranscriptome 3300028521 *Microbiome Permanent Draft Lab enriched biofilm microbial communities from the Montreal Biodome aquarium denitrification system, Montreal, Canada Lab enriched biofilm microbial communities from the Montreal Biodome aquarium denitrification system, Montreal, Canada - Low salt Genome Quebec 3300028521 Metatranscriptome Analysis Trinity Denovo v. 2.4.0. released by Villemur Richard No Yes richard.villemur@iaf.inrs.ca Richard Villemur No Engineered Lab enrichment Anaerobic media Defined media Unclassified Biofilm 45.5596 -73.5497 8 26401229 63535 47 4 102 4 0.0 Metatranscriptome 3300046286 *Microbiome Permanent Draft Characterization of biomass-degrading enzymes from insect-associated, soil, and chicken feces microbial communities from the USA and Brazil Metatranscriptome of enriched microbial communities from leaf-cutter ant refuse dump, University of Wisconsin, Madison, United States - pH8_5_C (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300046286 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes currie@bact.wisc.edu Cameron Currie No Environmental Terrestrial Insects nest Nest Nest dump ant dump 43.0765 -89.412 96882611 152778 2 0 31 0 Restricted 82.95 Metatranscriptome 3300049152 *Microbiome Permanent Draft Methane metabolizing microbial communities from different methane-rich environments from various locations Metatranscriptome of beaver rectum microbial communities from Maple Ridge, British Columbia, Canada - B3_RE3 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300049152 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes sean.crowe@ubc.ca Sean Crowe No Host-associated Mammals Stomach Digestive system Rumen fluid Beaver rectum 49.255245 -122.508517 42390978 83242 3 2 63 17 Restricted 33.6 Metatranscriptome 3300005490 *Microbiome Permanent Draft Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0900_B MetaT (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300005490 Metatranscriptome Analysis megahit v. 0.2.0 No Yes dab14@psu.edu Donald A. Bryant, Donald Bryant No Environmental Aquatic Hot (42-90C) Thermal springs Microbial mats Anoxygenic and chlorotrophic 44.539 -110.798 40408944 104407 596 7 1819 19 SRX2521777, SRX2521778 Unrestricted 0.0 Metatranscriptome 3300009679 *Microbiome Permanent Draft Marine eukaryotic communities from various locations to study complex ecological interactions Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_155_C17_100m_0.8um Metatranscriptome (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300009679 Metatranscriptome Analysis MEGAHIT v. 1.0.3 No Yes azworden@mbari.org; twoyke@lbl.gov Alexandra Worden; Tanja Woyke No Environmental Aquatic Oceanic Marine Unclassified Marine 33.2898 -129.427 837409938 1674676 268 61 1033 872 SRX7203895 Unrestricted 0.0 Metatranscriptome 3300006268 *Microbiome Permanent Draft Prairie soil microbial communities from Kansas, USA, after rainfall Prairie soil microbial communities from Kansas, USA, after rainfall - K17 Oregon State University 3300006268 Metatranscriptome Analysis VELVET 1.2.10, combine 23, 27, 31 released per JGI data release policy No Yes lzeglin@ksu.edu Lydia Zeglin No Environmental Terrestrial Unclassified Soil Grasslands Soil 39.1038 -96.6133 107883 641 0 0 2 0 0.0 Metatranscriptome 3300023552 *Microbiome Permanent Draft Soil, plant litter and rhizosphere microbial communities from European coniferous forests Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU5 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300023552 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes baldrian@biomed.cas.cz Petr Baldrian No Host-associated Plants Rhizosphere Roots Soil rhizosphere 49.0448 13.618 12682223 28660 14 60 601 393 SRX4455289 Unrestricted 40.88 Metatranscriptome 3300047664 *Microbiome Permanent Draft Seawater microbial and viral communities from North Atlantic Ocean Metatranscriptome of seawater microbial communities from North Atlantic Ocean - SX-100 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300047664 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes mbsulli@gmail.com Matthew Sullivan No Environmental Aquatic Oceanic Marine Unclassified Seawater 31.4322 -64.1881 92137084 200946 683 30 1203 430 Unrestricted 13.41 Metatranscriptome 3300020108 *Microbiome Permanent Draft Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 900m, 2.7-0.2um, replicate b, metaT Georgia Genomics Facility 3300020108 Metatranscriptome Analysis Trinity 2.06 released by JGI data releasing policy No Yes mpachiadaki@bigelow.org Maria Pachiadaki No Environmental Aquatic Coastal Marine Unclassified marine 10.5 -64.66 39039751 122695 9008 1853 18773 5360 0.0 Metatranscriptome 3300036474 *Microbiome Permanent Draft Salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States Metatranscriptome of salt marsh sediment microbial communities from Sand Creek Marshes, Rowley, MA, United States - 8SB15 (Metagenome Metatranscriptome) DOE Joint Genome Institute (JGI) 3300036474 Metatranscriptome Analysis MEGAHIT v. 1.1.2 Yes Yes je.bowen@northeastern.edu Jennifer Bowen No Environmental Aquatic Intertidal zone Marine Salt marsh sediment 42.7489 -70.8243 84652579 155461 321 2040 2460 6444 SRX8379679 Unrestricted 38.46 Metatranscriptome 3300043901 *Microbiome Permanent Draft Soil microbial communities from Duke University greenhouse, North Carolina, United States Metatranscriptome of soil communities from Duke University greenhouse, North Carolina, United States - AA75b (Eukaryote Community Metatranscriptome) DOE Joint Genome Institute (JGI) 3300043901 Metatranscriptome Analysis MEGAHIT v. 1.2.9 released based on JGI ITS Yes Yes jmtalbot@bu.edu Jennifer Bhatnagar No Environmental Terrestrial Unclassified Soil Unclassified soil 35.7877 -78.6442 103712729 224317 115 301 1599 1946 Unrestricted 49.5 Metatranscriptome 3300018639 *Microbiome Permanent Draft Marine viral and eukaryotic protist communities collected from different water depths during Tara Oceans survey Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_066 - TARA_N000000791 (ERX1782310-ERR1712181) Canada's Michael Smith Genome Sciences Centre 3300018639 Metatranscriptome Analysis Custom JGI assembly, Nielsen et. al. IMGSUPP-1768 Yes Yes No Environmental Aquatic Unclassified Marine Unclassified Marine -34.8901 18.0459 95247007 202703 16 10 50 70 0.0 Metatranscriptome